#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
ABC_tran	PF00005.27	gi|313117185|ref|YP_004044168.1|	-	2.1e-25	89.8	0.0	3.4e-25	89.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117185|ref|YP_004044168.1|	-	2.4e-14	53.9	0.2	2.6e-08	34.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|313117185|ref|YP_004044168.1|	-	2.4e-06	28.2	0.0	6.1e-06	26.9	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|313117185|ref|YP_004044168.1|	-	0.00021	21.0	0.1	0.00047	19.8	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|313117185|ref|YP_004044168.1|	-	0.0012	18.3	0.0	0.61	9.5	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|313117185|ref|YP_004044168.1|	-	0.0022	18.5	0.0	0.0033	18.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|313117185|ref|YP_004044168.1|	-	0.023	13.7	0.0	0.038	13.0	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_10	PF12846.7	gi|313117185|ref|YP_004044168.1|	-	0.048	12.6	0.0	0.28	10.0	0.0	2.0	2	0	0	2	2	2	0	AAA-like	domain
AAA_15	PF13175.6	gi|313117185|ref|YP_004044168.1|	-	0.064	13.0	0.0	0.17	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
SicP-binding	PF09119.10	gi|313117185|ref|YP_004044168.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	SicP	binding
RsgA_GTPase	PF03193.16	gi|313117185|ref|YP_004044168.1|	-	0.17	11.8	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Mg_chelatase	PF01078.21	gi|313117185|ref|YP_004044168.1|	-	0.19	11.1	0.0	4.7	6.5	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ABC2_membrane_2	PF12679.7	gi|313117186|ref|YP_004044169.1|	-	8.3e-23	81.1	5.9	9.3e-22	77.6	5.9	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|313117186|ref|YP_004044169.1|	-	9.5e-05	22.0	1.2	0.00017	21.2	1.2	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|313117186|ref|YP_004044169.1|	-	0.01	15.8	2.2	0.01	15.8	2.2	1.5	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
DDE_Tnp_IS240	PF13610.6	gi|313117188|ref|YP_004044171.1|	-	3.5e-12	46.8	0.0	4.3e-12	46.4	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DUF5518	PF17647.1	gi|313117189|ref|YP_004044172.1|	-	2.1e-09	37.6	27.7	2.4e-09	37.3	27.7	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
DUF3792	PF12670.7	gi|313117189|ref|YP_004044172.1|	-	0.0064	16.6	11.3	0.0091	16.2	11.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3792)
ALMT	PF11744.8	gi|313117189|ref|YP_004044172.1|	-	0.093	11.5	1.7	0.096	11.5	1.7	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
YbjM	PF11045.8	gi|313117189|ref|YP_004044172.1|	-	0.11	12.7	8.5	0.28	11.4	4.8	2.1	1	1	1	2	2	2	0	Putative	inner	membrane	protein	of	Enterobacteriaceae
MgtC	PF02308.16	gi|313117189|ref|YP_004044172.1|	-	0.13	12.6	11.4	0.06	13.7	8.9	1.7	2	0	0	2	2	2	0	MgtC	family
FadA	PF09403.10	gi|313117191|ref|YP_004044174.1|	-	0.16	12.4	3.5	0.22	12.1	2.2	1.7	2	0	0	2	2	2	0	Adhesion	protein	FadA
Usp	PF00582.26	gi|313117195|ref|YP_004044178.1|	-	1.9e-31	109.4	0.0	2.1e-31	109.3	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|313117195|ref|YP_004044178.1|	-	0.034	14.1	0.0	0.051	13.6	0.0	1.2	1	0	0	1	1	1	0	DNA	photolyase
Gram_pos_anchor	PF00746.21	gi|313117197|ref|YP_004044180.1|	-	0.21	11.6	0.6	0.24	11.4	0.6	1.1	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
ABC2_membrane_2	PF12679.7	gi|313117198|ref|YP_004044181.1|	-	4.3e-10	39.3	10.1	5.2e-10	39.1	10.1	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|313117198|ref|YP_004044181.1|	-	0.00049	20.1	4.3	0.00049	20.1	4.3	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|313117198|ref|YP_004044181.1|	-	0.27	10.3	12.4	0.42	9.7	12.4	1.4	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Glycos_transf_1	PF00534.20	gi|313117199|ref|YP_004044182.1|	-	1.6e-17	63.6	0.0	7.3e-17	61.4	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|313117199|ref|YP_004044182.1|	-	1.9e-15	57.3	0.0	3.4e-15	56.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|313117199|ref|YP_004044182.1|	-	2.6e-13	50.5	0.0	3.6e-12	46.9	0.0	2.4	2	1	1	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|313117199|ref|YP_004044182.1|	-	6.7e-09	36.0	0.0	1.4e-08	35.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|313117199|ref|YP_004044182.1|	-	4.6e-07	30.4	0.0	8.6e-07	29.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF3325	PF11804.8	gi|313117202|ref|YP_004044185.1|	-	0.11	12.7	4.8	0.22	11.7	4.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
DUF3784	PF12650.7	gi|313117202|ref|YP_004044185.1|	-	1.7	8.9	5.4	0.55	10.5	0.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3784)
ABC_tran	PF00005.27	gi|313117203|ref|YP_004044186.1|	-	5.9e-28	98.1	0.0	9.8e-28	97.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117203|ref|YP_004044186.1|	-	3.1e-11	43.7	0.2	2.9e-06	27.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|313117203|ref|YP_004044186.1|	-	1.6e-05	25.5	0.0	4.5e-05	24.0	0.0	1.7	3	0	0	3	3	3	1	AAA	domain
AAA_29	PF13555.6	gi|313117203|ref|YP_004044186.1|	-	6.9e-05	22.5	0.0	0.00013	21.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|313117203|ref|YP_004044186.1|	-	0.00011	21.7	0.0	0.0048	16.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|313117203|ref|YP_004044186.1|	-	0.0029	17.4	0.0	0.25	11.0	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|313117203|ref|YP_004044186.1|	-	0.0087	16.2	0.0	0.035	14.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
MukB	PF04310.12	gi|313117203|ref|YP_004044186.1|	-	0.014	15.3	0.1	0.021	14.6	0.1	1.4	1	1	0	1	1	1	0	MukB	N-terminal
RsgA_GTPase	PF03193.16	gi|313117203|ref|YP_004044186.1|	-	0.02	14.8	0.2	0.056	13.3	0.1	1.8	2	1	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|313117203|ref|YP_004044186.1|	-	0.038	13.6	0.0	0.063	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|313117203|ref|YP_004044186.1|	-	0.04	14.3	0.0	0.073	13.4	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_PrkA	PF08298.11	gi|313117203|ref|YP_004044186.1|	-	0.053	12.4	0.0	0.099	11.5	0.0	1.4	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_30	PF13604.6	gi|313117203|ref|YP_004044186.1|	-	0.072	12.8	0.1	0.16	11.7	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|313117203|ref|YP_004044186.1|	-	0.12	11.6	0.0	0.28	10.4	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
ABC2_membrane_5	PF13346.6	gi|313117204|ref|YP_004044187.1|	-	3.2e-05	23.6	4.4	3.2e-05	23.6	4.4	3.0	3	1	0	3	3	3	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|313117204|ref|YP_004044187.1|	-	0.00021	20.5	9.2	0.00021	20.5	9.2	2.5	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
Bac_luciferase	PF00296.20	gi|313117206|ref|YP_004044189.1|	-	6.1e-31	108.0	0.4	1.3e-25	90.5	0.0	2.4	2	1	0	2	2	2	2	Luciferase-like	monooxygenase
Hexapep	PF00132.24	gi|313117207|ref|YP_004044190.1|	-	5.7e-15	54.4	10.8	1.3e-06	27.9	1.0	3.5	2	2	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|313117207|ref|YP_004044190.1|	-	1.6e-06	27.7	10.5	1e-05	25.2	1.1	4.1	3	1	1	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|313117207|ref|YP_004044190.1|	-	0.0016	17.5	0.0	0.002	17.2	0.0	1.2	1	0	0	1	1	1	1	L-fucokinase
AbrB-like	PF14250.6	gi|313117208|ref|YP_004044191.1|	-	0.053	13.6	0.0	0.08	13.0	0.0	1.3	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
Phasin_2	PF09361.10	gi|313117209|ref|YP_004044192.1|	-	0.00058	20.1	3.9	0.15	12.3	0.3	2.3	1	1	1	2	2	2	2	Phasin	protein
GCK	PF07802.11	gi|313117209|ref|YP_004044192.1|	-	0.029	14.8	1.0	0.095	13.1	0.3	2.1	2	0	0	2	2	2	0	GCK	domain
DUF2383	PF09537.10	gi|313117209|ref|YP_004044192.1|	-	0.036	14.4	0.5	0.065	13.6	0.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
PMC2NT	PF08066.12	gi|313117209|ref|YP_004044192.1|	-	0.37	11.5	4.4	0.25	12.0	1.2	2.0	2	0	0	2	2	2	0	PMC2NT	(NUC016)	domain
PhaP_Bmeg	PF09602.10	gi|313117209|ref|YP_004044192.1|	-	1.5	8.7	7.2	3.1	7.7	0.9	2.5	1	1	0	2	2	2	0	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
PHA_synth_III_E	PF09712.10	gi|313117210|ref|YP_004044193.1|	-	4.3e-10	39.2	1.0	1.4e-09	37.5	0.3	1.9	1	1	1	2	2	2	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
Phasin	PF05597.11	gi|313117210|ref|YP_004044193.1|	-	0.026	14.5	0.3	0.076	13.0	0.1	2.0	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
FliD_C	PF07195.12	gi|313117210|ref|YP_004044193.1|	-	0.044	13.2	0.0	0.19	11.1	0.0	1.8	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Nsp1_C	PF05064.13	gi|313117210|ref|YP_004044193.1|	-	0.064	13.1	0.9	6.2	6.6	0.1	2.3	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
Abhydrolase_1	PF00561.20	gi|313117211|ref|YP_004044194.1|	-	2.8e-24	86.2	0.0	5.1e-24	85.3	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PhaC_N	PF07167.13	gi|313117211|ref|YP_004044194.1|	-	8.5e-13	48.3	0.0	1.5e-12	47.5	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DUF3141	PF11339.8	gi|313117211|ref|YP_004044194.1|	-	5.9e-10	38.2	0.0	3.1e-09	35.8	0.1	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3141)
HHH_5	PF14520.6	gi|313117211|ref|YP_004044194.1|	-	3.9e-09	37.0	0.0	8.1e-09	36.0	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Hydrolase_4	PF12146.8	gi|313117211|ref|YP_004044194.1|	-	2.3e-08	33.6	0.0	0.00029	20.2	0.0	2.5	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|313117211|ref|YP_004044194.1|	-	1.9e-05	24.4	0.0	0.0046	16.5	0.0	2.3	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|313117211|ref|YP_004044194.1|	-	6.4e-05	22.7	0.0	0.0099	15.6	0.0	2.3	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
Abhydrolase_5	PF12695.7	gi|313117211|ref|YP_004044194.1|	-	9.6e-05	22.2	0.0	0.16	11.7	0.0	2.3	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
DNA_pol_lambd_f	PF10391.9	gi|313117211|ref|YP_004044194.1|	-	0.00028	20.6	0.0	0.0008	19.2	0.0	1.8	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
DUF4332	PF14229.6	gi|313117211|ref|YP_004044194.1|	-	0.0013	18.9	0.2	0.016	15.4	0.2	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
PHB_depo_C	PF06850.11	gi|313117211|ref|YP_004044194.1|	-	0.0019	17.7	0.0	0.0055	16.2	0.0	1.8	2	0	0	2	2	2	1	PHB	de-polymerase	C-terminus
Cdd1	PF11731.8	gi|313117211|ref|YP_004044194.1|	-	0.0063	16.7	0.0	0.013	15.8	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
RNAse_A_bac	PF18431.1	gi|313117211|ref|YP_004044194.1|	-	0.027	15.4	0.2	0.1	13.6	0.2	1.9	1	0	0	1	1	1	0	Bacterial	CdiA-CT	RNAse	A	domain
PGAP1	PF07819.13	gi|313117211|ref|YP_004044194.1|	-	0.093	12.4	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	PGAP1-like	protein
HTH_Tnp_1	PF01527.20	gi|313117211|ref|YP_004044194.1|	-	0.12	12.7	0.9	0.23	11.8	0.0	2.0	2	0	0	2	2	2	0	Transposase
CcmH	PF03918.14	gi|313117212|ref|YP_004044195.1|	-	0.063	12.6	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein
MaoC_dehydratas	PF01575.19	gi|313117213|ref|YP_004044196.1|	-	6.5e-19	67.7	0.0	9.5e-19	67.2	0.0	1.2	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|313117213|ref|YP_004044196.1|	-	2.8e-07	30.7	0.0	3.2e-06	27.3	0.0	2.3	1	1	1	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
C1_1	PF00130.22	gi|313117214|ref|YP_004044197.1|	-	0.00017	21.4	9.2	0.00017	21.4	9.2	2.0	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Prok-RING_1	PF14446.6	gi|313117214|ref|YP_004044197.1|	-	0.0072	16.2	14.5	0.052	13.5	14.6	1.9	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
YhfH	PF14149.6	gi|313117214|ref|YP_004044197.1|	-	0.11	12.5	20.2	0.21	11.6	0.2	2.9	1	1	2	3	3	3	0	YhfH-like	protein
Desulfoferrod_N	PF06397.12	gi|313117214|ref|YP_004044197.1|	-	0.41	10.3	13.2	0.81	9.4	0.1	3.2	2	1	1	3	3	3	0	Desulfoferrodoxin,	N-terminal	domain
C1_2	PF03107.16	gi|313117214|ref|YP_004044197.1|	-	0.5	10.7	15.4	0.48	10.8	7.6	2.1	1	1	1	2	2	2	0	C1	domain
Zf_RING	PF16744.5	gi|313117214|ref|YP_004044197.1|	-	0.53	10.4	12.9	1.3	9.2	12.9	1.5	1	1	0	1	1	1	0	KIAA1045	RING	finger
zf-RING_2	PF13639.6	gi|313117214|ref|YP_004044197.1|	-	1.3	9.5	14.1	1.9	8.9	14.0	1.4	1	1	0	1	1	1	0	Ring	finger	domain
zf-HIT	PF04438.16	gi|313117214|ref|YP_004044197.1|	-	5.1	7.1	13.0	18	5.3	0.3	2.8	1	1	1	2	2	2	0	HIT	zinc	finger
Gmx_para_CXXCG	PF09535.10	gi|313117214|ref|YP_004044197.1|	-	9.1	5.5	7.4	2.8	7.1	3.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(Gmx_para_CXXCG)
OB_aCoA_assoc	PF01796.17	gi|313117215|ref|YP_004044198.1|	-	2.7e-06	27.3	0.7	4.9e-06	26.5	0.7	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
Thiolase_N	PF00108.23	gi|313117216|ref|YP_004044199.1|	-	2e-56	191.3	0.0	2.6e-56	190.9	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|313117216|ref|YP_004044199.1|	-	2.3e-07	30.5	0.1	6.2e-07	29.1	0.0	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|313117216|ref|YP_004044199.1|	-	0.0063	16.5	0.1	17	5.4	0.0	3.3	3	0	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|313117216|ref|YP_004044199.1|	-	0.067	12.7	0.9	0.26	10.8	0.7	1.9	1	1	1	2	2	2	0	Beta-ketoacyl	synthase,	N-terminal	domain
adh_short_C2	PF13561.6	gi|313117217|ref|YP_004044200.1|	-	6.7e-66	222.2	1.1	7.9e-66	221.9	1.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|313117217|ref|YP_004044200.1|	-	2.8e-60	203.1	2.0	3.3e-60	202.9	2.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|313117217|ref|YP_004044200.1|	-	5.1e-21	75.4	0.3	7.2e-21	74.9	0.3	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|313117217|ref|YP_004044200.1|	-	0.00025	20.6	0.2	0.00033	20.2	0.2	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|313117217|ref|YP_004044200.1|	-	0.00055	19.9	0.3	0.00071	19.5	0.3	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|313117217|ref|YP_004044200.1|	-	0.0023	17.1	0.2	0.0028	16.8	0.2	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
CoA_binding_2	PF13380.6	gi|313117217|ref|YP_004044200.1|	-	0.13	12.7	0.1	0.47	11.0	0.0	1.9	2	1	0	2	2	2	0	CoA	binding	domain
Carboxyl_trans	PF01039.22	gi|313117218|ref|YP_004044201.1|	-	5.1e-196	652.1	0.1	5.7e-196	651.9	0.1	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|313117218|ref|YP_004044201.1|	-	0.0007	19.1	0.5	0.0013	18.3	0.1	1.6	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
ACC_epsilon	PF13822.6	gi|313117219|ref|YP_004044202.1|	-	0.0019	18.8	20.5	0.0038	17.9	9.6	3.6	2	2	2	4	4	4	2	Acyl-CoA	carboxylase	epsilon	subunit
OAD_gamma	PF04277.13	gi|313117219|ref|YP_004044202.1|	-	6.1	7.5	15.6	3.3	8.3	12.1	2.4	2	1	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
ABC_tran	PF00005.27	gi|313117220|ref|YP_004044203.1|	-	5.2e-35	120.9	0.0	8e-35	120.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|313117220|ref|YP_004044203.1|	-	5.3e-18	65.3	0.0	1.3e-17	64.1	0.0	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|313117220|ref|YP_004044203.1|	-	2.9e-07	30.6	0.1	0.00068	19.5	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|313117220|ref|YP_004044203.1|	-	9.1e-06	26.0	0.0	0.0001	22.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|313117220|ref|YP_004044203.1|	-	3e-05	23.5	0.0	6.3e-05	22.5	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|313117220|ref|YP_004044203.1|	-	0.0043	17.5	0.3	0.011	16.1	0.1	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|313117220|ref|YP_004044203.1|	-	0.015	15.0	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|313117220|ref|YP_004044203.1|	-	0.017	14.9	0.0	0.026	14.3	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
TniB	PF05621.11	gi|313117220|ref|YP_004044203.1|	-	0.019	14.4	0.0	2.5	7.5	0.0	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
G-alpha	PF00503.20	gi|313117220|ref|YP_004044203.1|	-	0.039	13.1	0.0	0.047	12.9	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
RsgA_GTPase	PF03193.16	gi|313117220|ref|YP_004044203.1|	-	0.087	12.7	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AIG1	PF04548.16	gi|313117220|ref|YP_004044203.1|	-	0.12	11.7	0.0	2	7.7	0.0	2.1	2	0	0	2	2	2	0	AIG1	family
ATP-synt_ab	PF00006.25	gi|313117220|ref|YP_004044203.1|	-	0.13	11.9	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|313117220|ref|YP_004044203.1|	-	0.15	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
Sigma54_activat	PF00158.26	gi|313117220|ref|YP_004044203.1|	-	0.18	11.5	0.1	0.52	10.0	0.0	1.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|313117221|ref|YP_004044204.1|	-	8.3e-28	97.6	0.0	1.3e-27	97.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|313117221|ref|YP_004044204.1|	-	7.2e-17	61.7	0.7	1.5e-16	60.7	0.3	1.8	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|313117221|ref|YP_004044204.1|	-	1.8e-06	28.0	1.1	1.1e-05	25.4	0.1	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|313117221|ref|YP_004044204.1|	-	0.00013	21.5	0.1	0.00037	20.0	0.1	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
PRK	PF00485.18	gi|313117221|ref|YP_004044204.1|	-	0.0059	16.4	0.0	0.0089	15.8	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_22	PF13401.6	gi|313117221|ref|YP_004044204.1|	-	0.019	15.3	0.5	0.1	12.9	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|313117221|ref|YP_004044204.1|	-	0.037	13.8	0.0	0.079	12.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|313117221|ref|YP_004044204.1|	-	0.061	12.8	0.0	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|313117221|ref|YP_004044204.1|	-	0.088	13.2	0.1	0.28	11.6	0.1	1.8	1	1	1	2	2	2	0	AAA	ATPase	domain
BPD_transp_1	PF00528.22	gi|313117222|ref|YP_004044205.1|	-	1.3e-19	70.7	10.8	1.3e-19	70.7	10.8	2.6	2	2	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|313117222|ref|YP_004044205.1|	-	1.5e-09	37.7	1.9	1.5e-09	37.7	1.9	3.4	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|313117223|ref|YP_004044206.1|	-	4.4e-33	114.6	12.7	4.4e-33	114.6	12.7	2.1	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
60KD_IMP	PF02096.20	gi|313117223|ref|YP_004044206.1|	-	0.0038	17.2	3.8	0.023	14.6	0.0	2.8	2	1	0	2	2	2	1	60Kd	inner	membrane	protein
DUF1471	PF07338.13	gi|313117223|ref|YP_004044206.1|	-	0.091	12.7	0.1	0.21	11.6	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1471)
Lipoprotein_3	PF00938.17	gi|313117223|ref|YP_004044206.1|	-	0.13	12.5	0.6	0.75	10.0	0.2	2.2	2	0	0	2	2	2	0	Lipoprotein
SBP_bac_5	PF00496.22	gi|313117224|ref|YP_004044207.1|	-	2e-56	191.6	8.2	2.6e-56	191.2	8.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|313117224|ref|YP_004044207.1|	-	0.0021	17.8	2.0	0.0041	16.9	2.0	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_3	PF00497.20	gi|313117224|ref|YP_004044207.1|	-	0.048	13.1	0.0	0.1	12.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
ABC_tran	PF00005.27	gi|313117225|ref|YP_004044208.1|	-	1e-36	126.4	0.0	1.4e-36	126.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|313117225|ref|YP_004044208.1|	-	8.6e-15	55.0	0.7	1.8e-14	54.0	0.2	1.9	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|313117225|ref|YP_004044208.1|	-	3.3e-07	30.4	0.2	0.00068	19.5	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|313117225|ref|YP_004044208.1|	-	1.3e-06	28.7	0.2	1.9e-05	24.9	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|313117225|ref|YP_004044208.1|	-	0.0015	18.9	0.1	0.004	17.6	0.1	1.7	1	1	1	2	2	2	1	AAA	ATPase	domain
G-alpha	PF00503.20	gi|313117225|ref|YP_004044208.1|	-	0.0027	16.9	0.0	0.0033	16.6	0.0	1.1	1	0	0	1	1	1	1	G-protein	alpha	subunit
ATP-synt_ab	PF00006.25	gi|313117225|ref|YP_004044208.1|	-	0.0084	15.8	0.0	0.0085	15.8	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
RsgA_GTPase	PF03193.16	gi|313117225|ref|YP_004044208.1|	-	0.012	15.6	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|313117225|ref|YP_004044208.1|	-	0.025	14.3	0.1	0.047	13.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
TniB	PF05621.11	gi|313117225|ref|YP_004044208.1|	-	0.039	13.4	0.1	9.3	5.6	0.0	2.3	2	1	0	2	2	2	0	Bacterial	TniB	protein
AAA_14	PF13173.6	gi|313117225|ref|YP_004044208.1|	-	0.087	12.9	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|313117225|ref|YP_004044208.1|	-	0.1	11.8	0.0	0.18	11.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|313117225|ref|YP_004044208.1|	-	0.12	12.7	0.0	0.23	11.9	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
PRK	PF00485.18	gi|313117225|ref|YP_004044208.1|	-	0.14	11.9	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Septin	PF00735.18	gi|313117225|ref|YP_004044208.1|	-	0.14	11.4	0.0	0.21	10.8	0.0	1.2	1	0	0	1	1	1	0	Septin
NACHT	PF05729.12	gi|313117225|ref|YP_004044208.1|	-	0.34	10.8	1.0	0.99	9.3	1.0	1.9	1	1	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.27	gi|313117226|ref|YP_004044209.1|	-	2.1e-26	93.1	0.0	2.8e-26	92.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|313117226|ref|YP_004044209.1|	-	4e-18	65.7	0.2	7.6e-18	64.8	0.2	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|313117226|ref|YP_004044209.1|	-	0.00031	20.6	0.6	0.003	17.4	0.1	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|313117226|ref|YP_004044209.1|	-	0.013	15.0	0.3	0.051	13.0	0.3	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|313117226|ref|YP_004044209.1|	-	0.17	12.2	2.5	2.9	8.2	2.5	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|313117226|ref|YP_004044209.1|	-	0.29	11.5	0.9	0.92	9.9	0.9	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
BPD_transp_1	PF00528.22	gi|313117227|ref|YP_004044210.1|	-	1e-28	100.4	13.7	1.4e-28	99.9	9.6	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|313117227|ref|YP_004044210.1|	-	4.3e-14	52.2	0.3	4.3e-14	52.2	0.3	2.8	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
E1-E2_ATPase	PF00122.20	gi|313117227|ref|YP_004044210.1|	-	0.42	10.1	6.6	0.46	10.0	0.0	2.5	3	0	0	3	3	3	0	E1-E2	ATPase
BPD_transp_1	PF00528.22	gi|313117228|ref|YP_004044211.1|	-	9e-45	152.7	14.5	9e-45	152.7	14.5	1.9	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|313117229|ref|YP_004044212.1|	-	9.7e-68	228.8	1.2	1.3e-67	228.5	1.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Retrotran_gag_3	PF14244.6	gi|313117229|ref|YP_004044212.1|	-	0.15	11.9	0.0	13	5.7	0.0	2.8	2	0	0	2	2	2	0	gag-polypeptide	of	LTR	copia-type
PRODH	PF18327.1	gi|313117229|ref|YP_004044212.1|	-	0.76	10.0	5.3	2.7	8.3	0.0	3.4	3	0	0	3	3	3	0	Proline	utilization	A	proline	dehydrogenase	N-terminal	domain
IclR	PF01614.18	gi|313117230|ref|YP_004044213.1|	-	2.8e-26	91.9	0.4	4.7e-25	87.9	0.1	2.1	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|313117230|ref|YP_004044213.1|	-	1.1e-06	28.3	0.1	2.6e-06	27.1	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|313117230|ref|YP_004044213.1|	-	1.8e-05	24.2	0.0	4.3e-05	23.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|313117230|ref|YP_004044213.1|	-	0.00024	20.9	0.1	0.00055	19.7	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|313117230|ref|YP_004044213.1|	-	0.0032	17.3	0.1	0.0087	15.9	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.12	gi|313117230|ref|YP_004044213.1|	-	0.013	15.2	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF5304	PF17230.2	gi|313117230|ref|YP_004044213.1|	-	0.015	15.5	0.3	0.049	13.9	0.1	1.8	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5304)
HTH_9	PF08221.11	gi|313117230|ref|YP_004044213.1|	-	0.017	15.2	0.1	0.037	14.1	0.1	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
MarR	PF01047.22	gi|313117230|ref|YP_004044213.1|	-	0.018	14.9	0.1	0.048	13.6	0.1	1.7	1	0	0	1	1	1	0	MarR	family
HTH_46	PF15977.5	gi|313117230|ref|YP_004044213.1|	-	0.022	14.7	0.0	0.083	12.9	0.0	1.9	2	0	0	2	2	1	0	Winged	helix-turn-helix	DNA	binding
B-block_TFIIIC	PF04182.12	gi|313117230|ref|YP_004044213.1|	-	0.032	14.4	0.0	0.084	13.0	0.0	1.7	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
TrmB	PF01978.19	gi|313117230|ref|YP_004044213.1|	-	0.051	13.5	0.0	0.2	11.6	0.0	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF1803	PF08820.10	gi|313117230|ref|YP_004044213.1|	-	0.054	13.5	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
DUF4148	PF13663.6	gi|313117230|ref|YP_004044213.1|	-	0.055	13.7	0.5	0.17	12.1	0.1	2.1	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF4148)
HTH_20	PF12840.7	gi|313117230|ref|YP_004044213.1|	-	0.058	13.5	0.1	0.15	12.2	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
cNMP_binding	PF00027.29	gi|313117230|ref|YP_004044213.1|	-	0.061	13.4	0.0	0.17	12.0	0.0	1.8	1	0	0	1	1	1	0	Cyclic	nucleotide-binding	domain
Rio2_N	PF09202.11	gi|313117230|ref|YP_004044213.1|	-	0.083	13.1	0.0	0.23	11.7	0.0	1.7	2	0	0	2	2	2	0	Rio2,	N-terminal
SpoIIID	PF12116.8	gi|313117230|ref|YP_004044213.1|	-	0.086	12.9	0.2	0.28	11.3	0.1	1.9	2	0	0	2	2	2	0	Stage	III	sporulation	protein	D
HTH_10	PF04967.12	gi|313117230|ref|YP_004044213.1|	-	0.095	12.5	0.1	0.41	10.5	0.0	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_11	PF08279.12	gi|313117230|ref|YP_004044213.1|	-	0.1	12.6	0.0	0.31	11.0	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
AMP-binding	PF00501.28	gi|313117231|ref|YP_004044214.1|	-	2.3e-69	234.1	0.1	3.5e-69	233.4	0.1	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|313117231|ref|YP_004044214.1|	-	8.7e-14	52.3	0.0	1.6e-13	51.4	0.0	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Acyl-CoA_dh_1	PF00441.24	gi|313117232|ref|YP_004044215.1|	-	2.4e-33	115.4	1.7	2.4e-33	115.4	1.7	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AidB_N	PF18158.1	gi|313117232|ref|YP_004044215.1|	-	2e-20	73.3	0.0	6.8e-20	71.6	0.0	1.9	1	0	0	1	1	1	1	Adaptive	response	protein	AidB	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|313117232|ref|YP_004044215.1|	-	7e-18	64.6	0.0	1.4e-17	63.7	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|313117232|ref|YP_004044215.1|	-	8.2e-10	39.1	6.6	1.7e-09	38.1	0.7	2.3	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
IclR	PF01614.18	gi|313117233|ref|YP_004044216.1|	-	2.1e-35	121.4	0.2	5e-35	120.2	0.0	1.7	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|313117233|ref|YP_004044216.1|	-	4.2e-10	39.3	0.3	2.9e-09	36.6	0.2	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|313117233|ref|YP_004044216.1|	-	2.8e-07	30.3	0.0	7e-07	29.0	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|313117233|ref|YP_004044216.1|	-	3.4e-07	30.1	0.1	1e-06	28.5	0.1	1.8	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|313117233|ref|YP_004044216.1|	-	8.1e-06	25.3	0.0	2.7e-05	23.6	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|313117233|ref|YP_004044216.1|	-	3.3e-05	23.8	0.1	7.4e-05	22.7	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|313117233|ref|YP_004044216.1|	-	3.5e-05	23.6	0.0	7.7e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|313117233|ref|YP_004044216.1|	-	0.00043	20.4	0.2	0.0054	16.9	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_38	PF13936.6	gi|313117233|ref|YP_004044216.1|	-	0.00048	19.8	0.1	0.0011	18.7	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|313117233|ref|YP_004044216.1|	-	0.00073	20.0	0.7	0.0026	18.2	0.1	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|313117233|ref|YP_004044216.1|	-	0.0014	18.3	0.1	0.0035	17.0	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|313117233|ref|YP_004044216.1|	-	0.005	16.8	0.8	0.095	12.7	0.1	2.7	3	0	0	3	3	3	1	HTH	domain
Fe_dep_repress	PF01325.19	gi|313117233|ref|YP_004044216.1|	-	0.011	15.9	0.1	0.027	14.7	0.1	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|313117233|ref|YP_004044216.1|	-	0.015	15.1	0.0	0.031	14.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF1257	PF06868.11	gi|313117233|ref|YP_004044216.1|	-	0.023	14.9	0.1	6.8	7.0	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1257)
TrmB	PF01978.19	gi|313117233|ref|YP_004044216.1|	-	0.071	13.0	0.0	0.17	11.8	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HATPase_c	PF02518.26	gi|313117234|ref|YP_004044217.1|	-	2.5e-28	98.8	0.1	4.8e-28	97.9	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|313117234|ref|YP_004044217.1|	-	1.7e-12	47.4	0.0	1.8e-11	44.2	0.0	2.7	3	0	0	3	3	3	1	PAS	fold
HisKA	PF00512.25	gi|313117234|ref|YP_004044217.1|	-	1e-10	41.5	0.4	4.6e-10	39.4	0.1	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|313117234|ref|YP_004044217.1|	-	3.3e-10	39.9	0.0	1.3e-09	38.0	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
HAMP	PF00672.25	gi|313117234|ref|YP_004044217.1|	-	4.1e-08	33.5	0.0	1.2e-07	31.9	0.0	1.9	1	0	0	1	1	1	1	HAMP	domain
PAS_4	PF08448.10	gi|313117234|ref|YP_004044217.1|	-	2.7e-06	27.6	0.4	1.4e-05	25.3	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|313117234|ref|YP_004044217.1|	-	3.2e-06	27.3	0.0	1.9e-05	24.8	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
HATPase_c_5	PF14501.6	gi|313117234|ref|YP_004044217.1|	-	9.5e-06	25.5	0.0	2.6e-05	24.1	0.0	1.8	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|313117234|ref|YP_004044217.1|	-	0.0015	18.5	0.0	0.0034	17.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|313117234|ref|YP_004044217.1|	-	0.0038	17.1	0.0	0.0078	16.0	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FxsA	PF04186.13	gi|313117234|ref|YP_004044217.1|	-	0.056	13.6	0.3	0.13	12.3	0.3	1.6	1	0	0	1	1	1	0	FxsA	cytoplasmic	membrane	protein
CorA	PF01544.18	gi|313117234|ref|YP_004044217.1|	-	1.3	8.3	4.7	0.17	11.2	0.1	1.8	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
SBP_bac_1	PF01547.25	gi|313117235|ref|YP_004044218.1|	-	8.2e-21	75.3	2.2	3.5e-20	73.2	2.2	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
ApbA_C	PF08546.11	gi|313117235|ref|YP_004044218.1|	-	0.032	14.4	0.0	7.6	6.7	0.0	2.4	1	1	1	2	2	2	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
SpoVIF	PF14069.6	gi|313117235|ref|YP_004044218.1|	-	0.091	12.6	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Stage	VI	sporulation	protein	F
Peripla_BP_6	PF13458.6	gi|313117236|ref|YP_004044219.1|	-	5.9e-38	131.4	8.7	8.2e-38	130.9	8.7	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|313117236|ref|YP_004044219.1|	-	6.1e-20	71.6	0.0	9e-19	67.8	0.0	2.0	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|313117236|ref|YP_004044219.1|	-	3.9e-07	29.4	0.1	1.2e-06	27.8	0.1	1.7	2	0	0	2	2	2	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|313117236|ref|YP_004044219.1|	-	0.019	14.8	2.8	0.019	14.8	2.8	2.5	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MCPsignal	PF00015.21	gi|313117237|ref|YP_004044220.1|	-	1.6e-43	148.5	26.3	1.6e-43	148.5	26.3	4.6	2	1	3	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|313117237|ref|YP_004044220.1|	-	4.1e-11	43.2	0.0	4.1e-11	43.2	0.0	4.4	3	1	2	5	5	5	1	Cache	domain
HAMP	PF00672.25	gi|313117237|ref|YP_004044220.1|	-	4.3e-06	27.0	19.9	1.4e-05	25.4	0.0	5.8	6	1	1	7	7	7	2	HAMP	domain
BLOC1_2	PF10046.9	gi|313117237|ref|YP_004044220.1|	-	0.0054	17.0	33.2	1.9	8.9	1.1	6.0	3	2	2	5	5	5	4	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF948	PF06103.11	gi|313117237|ref|YP_004044220.1|	-	0.0078	16.5	41.3	0.075	13.3	1.5	7.0	3	2	4	7	7	7	3	Bacterial	protein	of	unknown	function	(DUF948)
KxDL	PF10241.9	gi|313117237|ref|YP_004044220.1|	-	0.031	14.6	21.9	0.15	12.4	0.1	5.0	2	2	2	4	4	4	0	Uncharacterized	conserved	protein
OppC_N	PF12911.7	gi|313117237|ref|YP_004044220.1|	-	0.079	12.9	0.0	0.079	12.9	0.0	1.8	2	0	0	2	2	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Laminin_II	PF06009.12	gi|313117237|ref|YP_004044220.1|	-	0.13	12.3	42.1	0.025	14.6	6.6	4.6	2	2	2	4	4	4	0	Laminin	Domain	II
DUF1664	PF07889.12	gi|313117237|ref|YP_004044220.1|	-	1.4	8.9	38.3	3.1	7.8	1.2	5.9	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Mitofilin	PF09731.9	gi|313117237|ref|YP_004044220.1|	-	1.7	7.4	51.0	1.8	7.3	19.0	2.3	1	1	1	2	2	2	0	Mitochondrial	inner	membrane	protein
Bacillus_HBL	PF05791.11	gi|313117237|ref|YP_004044220.1|	-	2	8.2	10.4	1.3	8.8	1.3	3.1	2	2	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
IIGP	PF05049.13	gi|313117237|ref|YP_004044220.1|	-	2.8	6.9	9.2	2	7.4	2.2	2.3	2	0	0	2	2	2	0	Interferon-inducible	GTPase	(IIGP)
NPV_P10	PF05531.12	gi|313117237|ref|YP_004044220.1|	-	4	8.0	23.8	0.13	12.8	1.6	5.3	4	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Fib_alpha	PF08702.10	gi|313117237|ref|YP_004044220.1|	-	5.6	7.1	27.2	2.7	8.2	3.5	4.5	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Pilin_N	PF07790.11	gi|313117238|ref|YP_004044221.1|	-	3.4e-08	34.3	0.7	6e-08	33.5	0.3	1.6	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DUF2190	PF09956.9	gi|313117238|ref|YP_004044221.1|	-	0.076	13.5	2.6	0.064	13.7	0.9	1.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2190)
7TMR-DISM_7TM	PF07695.11	gi|313117239|ref|YP_004044222.1|	-	0.056	13.3	7.4	0.068	13.1	7.4	1.2	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
MerC	PF03203.14	gi|313117239|ref|YP_004044222.1|	-	0.091	13.2	7.8	0.13	12.7	7.8	1.2	1	0	0	1	1	1	0	MerC	mercury	resistance	protein
RseC_MucC	PF04246.12	gi|313117239|ref|YP_004044222.1|	-	2.5	8.1	6.8	7.3	6.6	0.1	2.3	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
LPAM_1	PF08139.12	gi|313117240|ref|YP_004044223.1|	-	0.088	13.3	0.1	0.13	12.8	0.1	1.3	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
ABC2_membrane_2	PF12679.7	gi|313117242|ref|YP_004044225.1|	-	1.3e-30	106.7	16.9	1.7e-30	106.3	13.9	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|313117242|ref|YP_004044225.1|	-	3.1e-09	37.0	9.3	3.1e-09	37.0	9.3	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|313117242|ref|YP_004044225.1|	-	5.9e-07	28.9	17.3	7.6e-07	28.5	17.3	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|313117242|ref|YP_004044225.1|	-	0.00023	20.8	7.1	0.00047	19.8	7.1	1.5	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|313117242|ref|YP_004044225.1|	-	0.00041	19.8	13.1	0.00069	19.1	13.1	1.5	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC_tran	PF00005.27	gi|313117243|ref|YP_004044226.1|	-	7.4e-30	104.2	0.0	1.1e-29	103.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117243|ref|YP_004044226.1|	-	1.2e-12	48.3	0.1	1.5e-08	34.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|313117243|ref|YP_004044226.1|	-	0.015	15.7	0.0	0.023	15.1	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|313117243|ref|YP_004044226.1|	-	0.015	15.8	0.0	0.02	15.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|313117243|ref|YP_004044226.1|	-	0.026	14.7	0.0	0.085	13.1	0.0	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.6	gi|313117243|ref|YP_004044226.1|	-	0.042	13.6	0.1	0.079	12.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|313117243|ref|YP_004044226.1|	-	0.053	13.1	0.0	0.4	10.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.19	gi|313117243|ref|YP_004044226.1|	-	0.056	12.9	0.0	9.3	5.6	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ATP_bind_1	PF03029.17	gi|313117243|ref|YP_004044226.1|	-	0.13	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|313117243|ref|YP_004044226.1|	-	0.17	11.8	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
BsuPI	PF12690.7	gi|313117244|ref|YP_004044227.1|	-	0.06	13.4	0.1	8.6	6.5	0.0	2.4	2	0	0	2	2	2	0	Intracellular	proteinase	inhibitor
CARDB	PF07705.11	gi|313117244|ref|YP_004044227.1|	-	0.068	13.4	0.0	3.8	7.8	0.0	2.3	2	0	0	2	2	2	0	CARDB
EamA	PF00892.20	gi|313117245|ref|YP_004044228.1|	-	8.5e-35	119.9	27.8	2.9e-18	66.3	9.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|313117245|ref|YP_004044228.1|	-	0.015	14.6	5.3	0.02	14.2	2.0	2.2	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
SLC35F	PF06027.12	gi|313117245|ref|YP_004044228.1|	-	0.028	13.9	7.3	0.049	13.1	7.3	1.4	1	1	0	1	1	1	0	Solute	carrier	family	35
DUF373	PF04123.13	gi|313117245|ref|YP_004044228.1|	-	5.9	6.2	13.7	0.29	10.5	6.9	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF373)
AsnC_trans_reg	PF01037.21	gi|313117246|ref|YP_004044229.1|	-	2.2e-09	37.1	0.7	3.6e-09	36.5	0.2	1.6	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|313117246|ref|YP_004044229.1|	-	5.3e-08	32.3	0.0	9.8e-08	31.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|313117246|ref|YP_004044229.1|	-	0.0002	21.1	0.0	0.00041	20.1	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|313117246|ref|YP_004044229.1|	-	0.00045	20.0	0.0	0.00078	19.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|313117246|ref|YP_004044229.1|	-	0.00059	19.6	0.0	0.0037	17.0	0.0	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|313117246|ref|YP_004044229.1|	-	0.0011	19.4	0.1	0.0025	18.3	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|313117246|ref|YP_004044229.1|	-	0.0033	17.5	0.0	0.0067	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|313117246|ref|YP_004044229.1|	-	0.0094	15.8	0.0	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GYD	PF08734.11	gi|313117246|ref|YP_004044229.1|	-	0.018	15.0	0.1	0.045	13.7	0.0	1.7	2	0	0	2	2	2	0	GYD	domain
HTH_Crp_2	PF13545.6	gi|313117246|ref|YP_004044229.1|	-	0.038	14.0	0.2	0.8	9.7	0.0	2.2	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.9	gi|313117246|ref|YP_004044229.1|	-	0.088	12.9	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Rio2_N	PF09202.11	gi|313117246|ref|YP_004044229.1|	-	0.1	12.8	0.0	3.2	8.1	0.0	2.3	2	0	0	2	2	2	0	Rio2,	N-terminal
MerR	PF00376.23	gi|313117246|ref|YP_004044229.1|	-	0.17	11.7	0.0	0.42	10.4	0.0	1.7	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_10	PF04967.12	gi|313117247|ref|YP_004044230.1|	-	2.4e-18	65.7	0.0	4.4e-18	64.8	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|313117247|ref|YP_004044230.1|	-	9.3e-08	31.6	0.2	2e-06	27.4	0.0	2.6	2	1	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.19	gi|313117247|ref|YP_004044230.1|	-	7.2e-06	25.5	0.0	3.9e-05	23.1	0.0	2.0	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|313117247|ref|YP_004044230.1|	-	0.0003	20.2	0.0	0.00064	19.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|313117247|ref|YP_004044230.1|	-	0.00039	20.1	0.0	0.0056	16.4	0.0	2.3	1	1	0	1	1	1	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|313117247|ref|YP_004044230.1|	-	0.00084	19.1	0.0	0.002	17.9	0.0	1.6	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_20	PF12840.7	gi|313117247|ref|YP_004044230.1|	-	0.0071	16.4	0.1	0.019	15.0	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|313117247|ref|YP_004044230.1|	-	0.021	14.4	0.0	0.055	13.0	0.0	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|313117247|ref|YP_004044230.1|	-	0.03	14.1	0.0	0.077	12.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.7	gi|313117247|ref|YP_004044230.1|	-	0.098	12.6	0.2	0.48	10.4	0.0	2.1	2	0	0	2	2	2	0	MarR	family
Amidohydro_1	PF01979.20	gi|313117248|ref|YP_004044231.1|	-	4.2e-49	167.7	0.0	5.1e-49	167.4	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|313117248|ref|YP_004044231.1|	-	1.3e-18	67.7	1.1	2e-13	50.7	0.1	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Cupin_2	PF07883.11	gi|313117249|ref|YP_004044232.1|	-	8.5e-11	41.4	1.8	1.7e-10	40.5	1.8	1.4	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|313117249|ref|YP_004044232.1|	-	0.0019	18.1	0.0	0.0028	17.5	0.0	1.4	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|313117249|ref|YP_004044232.1|	-	0.0093	15.6	0.1	0.019	14.6	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_1	PF00190.22	gi|313117249|ref|YP_004044232.1|	-	0.0094	15.6	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	1	Cupin
MCRA	PF06100.11	gi|313117250|ref|YP_004044233.1|	-	7.5e-216	717.7	0.0	8.5e-216	717.5	0.0	1.0	1	0	0	1	1	1	1	MCRA	family
NAD_binding_8	PF13450.6	gi|313117250|ref|YP_004044233.1|	-	3e-05	24.1	0.1	7.6e-05	22.9	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|313117250|ref|YP_004044233.1|	-	0.00038	20.2	0.0	0.00097	18.8	0.0	1.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
PadR	PF03551.14	gi|313117251|ref|YP_004044234.1|	-	1.3e-15	57.1	1.0	1.6e-15	56.8	1.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|313117251|ref|YP_004044234.1|	-	0.0029	17.5	0.2	0.0043	17.0	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|313117251|ref|YP_004044234.1|	-	0.02	14.7	0.0	0.029	14.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
B-block_TFIIIC	PF04182.12	gi|313117251|ref|YP_004044234.1|	-	0.025	14.7	0.0	0.057	13.6	0.0	1.6	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.7	gi|313117251|ref|YP_004044234.1|	-	0.13	12.2	0.0	0.33	10.9	0.0	1.7	1	1	0	1	1	1	0	MarR	family
MFS_1	PF07690.16	gi|313117252|ref|YP_004044235.1|	-	7.4e-13	48.1	33.7	7.4e-13	48.1	33.7	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
UPF0227	PF05728.12	gi|313117252|ref|YP_004044235.1|	-	0.22	11.4	0.1	0.37	10.7	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
UvrD-helicase	PF00580.21	gi|313117253|ref|YP_004044236.1|	-	2.6e-49	168.4	0.1	8.6e-49	166.7	0.1	1.8	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|313117253|ref|YP_004044236.1|	-	5.4e-29	101.6	0.0	1.1e-17	64.5	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|313117253|ref|YP_004044236.1|	-	7.2e-25	88.0	0.0	4.8e-24	85.4	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|313117253|ref|YP_004044236.1|	-	6.9e-09	35.4	0.1	0.0028	17.5	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|313117253|ref|YP_004044236.1|	-	1.5e-07	31.6	0.1	8.3e-06	25.9	0.0	2.7	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|313117253|ref|YP_004044236.1|	-	2.4e-06	27.4	0.0	1.3e-05	25.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|313117253|ref|YP_004044236.1|	-	0.002	18.0	0.0	0.6	9.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
DUF2800	PF10926.8	gi|313117253|ref|YP_004044236.1|	-	0.0025	17.1	0.0	0.0048	16.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
AAA_12	PF13087.6	gi|313117253|ref|YP_004044236.1|	-	0.0052	16.4	0.0	0.14	11.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|313117253|ref|YP_004044236.1|	-	0.031	14.0	2.8	29	4.3	0.1	4.1	4	0	0	4	4	4	0	Viral	(Superfamily	1)	RNA	helicase
TetR_N	PF00440.23	gi|313117253|ref|YP_004044236.1|	-	0.1	12.4	0.3	0.51	10.2	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
PDDEXK_1	PF12705.7	gi|313117254|ref|YP_004044237.1|	-	2.4e-13	50.6	0.1	8.6e-13	48.8	0.1	2.1	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
MaoC_dehydrat_N	PF13452.6	gi|313117255|ref|YP_004044238.1|	-	9.8e-09	35.4	0.1	1.7e-07	31.4	0.1	2.0	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
MaoC_dehydratas	PF01575.19	gi|313117255|ref|YP_004044238.1|	-	0.00016	21.2	0.1	0.00082	18.9	0.1	1.9	1	1	0	1	1	1	1	MaoC	like	domain
4HBT	PF03061.22	gi|313117255|ref|YP_004044238.1|	-	0.076	13.4	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	Thioesterase	superfamily
Penicillinase_R	PF03965.16	gi|313117256|ref|YP_004044239.1|	-	1.1e-11	45.0	0.0	1.3e-11	44.9	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
FUR	PF01475.19	gi|313117256|ref|YP_004044239.1|	-	3.5e-05	23.9	0.1	4.4e-05	23.6	0.1	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Arg_repressor	PF01316.21	gi|313117256|ref|YP_004044239.1|	-	0.0019	17.9	0.4	0.0029	17.3	0.4	1.2	1	0	0	1	1	1	1	Arginine	repressor,	DNA	binding	domain
DUF480	PF04337.12	gi|313117256|ref|YP_004044239.1|	-	0.0027	17.8	0.0	0.0031	17.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF480
HTH_27	PF13463.6	gi|313117256|ref|YP_004044239.1|	-	0.0086	16.5	1.0	0.02	15.4	0.7	1.9	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|313117256|ref|YP_004044239.1|	-	0.0097	15.9	0.1	0.014	15.4	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|313117256|ref|YP_004044239.1|	-	0.013	15.4	3.4	0.044	13.7	1.8	2.4	2	1	0	2	2	2	0	MarR	family
DUF4364	PF14277.6	gi|313117256|ref|YP_004044239.1|	-	0.042	13.6	0.0	0.054	13.2	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_Tnp_Tc3_2	PF01498.18	gi|313117256|ref|YP_004044239.1|	-	0.058	13.7	0.2	0.12	12.7	0.2	1.5	1	0	0	1	1	1	0	Transposase
HTH_32	PF13565.6	gi|313117256|ref|YP_004044239.1|	-	0.064	13.9	2.1	0.12	13.1	0.3	2.2	1	1	2	3	3	3	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|313117256|ref|YP_004044239.1|	-	0.095	12.6	0.5	0.21	11.5	0.5	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.10	gi|313117256|ref|YP_004044239.1|	-	0.14	12.1	1.1	0.21	11.6	0.6	1.5	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
Copper-bind	PF00127.20	gi|313117257|ref|YP_004044240.1|	-	7.6e-18	64.8	1.7	1.7e-17	63.7	1.7	1.6	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|313117257|ref|YP_004044240.1|	-	0.0022	18.1	2.7	0.044	13.9	2.8	2.2	1	1	0	1	1	1	1	Cupredoxin-like	domain
CBM_20	PF00686.19	gi|313117257|ref|YP_004044240.1|	-	0.19	11.7	1.3	0.45	10.5	0.1	2.1	3	0	0	3	3	3	0	Starch	binding	domain
PKD_3	PF16820.5	gi|313117257|ref|YP_004044240.1|	-	0.41	10.4	2.0	4.5	7.1	0.1	2.2	2	0	0	2	2	2	0	PKD-like	domain
nos_propeller_2	PF18793.1	gi|313117258|ref|YP_004044241.1|	-	4.6e-33	113.4	0.0	1.1e-32	112.2	0.0	1.7	1	0	0	1	1	1	1	Nitrous	oxide	reductase	propeller	repeat	2
nos_propeller	PF18764.1	gi|313117258|ref|YP_004044241.1|	-	8.5e-29	99.3	0.6	2.7e-27	94.5	0.2	3.1	3	0	0	3	3	3	1	Nitrous	oxide	reductase	propeller	repeat
Cupredoxin_1	PF13473.6	gi|313117258|ref|YP_004044241.1|	-	2e-07	31.1	0.0	4.9e-07	29.8	0.0	1.7	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|313117258|ref|YP_004044241.1|	-	1.5e-05	24.6	3.6	2.3e-05	24.0	3.6	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COX2	PF00116.20	gi|313117258|ref|YP_004044241.1|	-	3e-05	23.9	0.0	8.6e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
WD40	PF00400.32	gi|313117258|ref|YP_004044241.1|	-	0.068	14.1	0.8	28	5.8	0.0	4.0	4	0	0	4	4	4	0	WD	domain,	G-beta	repeat
NosD	PF05048.13	gi|313117260|ref|YP_004044243.1|	-	3.4e-56	190.2	15.0	9.6e-54	182.2	14.2	2.1	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|313117260|ref|YP_004044243.1|	-	1.1e-26	93.6	15.9	4.5e-19	68.9	3.9	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1565	PF07602.11	gi|313117260|ref|YP_004044243.1|	-	1.3e-05	24.6	6.7	0.05	12.9	0.0	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1565)
VCBS	PF13517.6	gi|313117260|ref|YP_004044243.1|	-	0.019	15.5	0.4	0.019	15.5	0.4	3.0	3	0	0	3	3	3	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
Lsm_C	PF14894.6	gi|313117260|ref|YP_004044243.1|	-	0.13	12.1	0.0	0.27	11.0	0.0	1.5	1	0	0	1	1	1	0	Lsm	C-terminal
ABC_tran	PF00005.27	gi|313117261|ref|YP_004044244.1|	-	7.2e-32	110.8	0.0	5.5e-31	107.9	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|313117261|ref|YP_004044244.1|	-	1.8e-12	47.7	0.4	3.8e-08	33.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|313117261|ref|YP_004044244.1|	-	0.0013	19.4	0.0	0.0023	18.6	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|313117261|ref|YP_004044244.1|	-	0.0063	16.9	0.0	0.012	16.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|313117261|ref|YP_004044244.1|	-	0.019	15.0	0.3	0.28	11.3	0.3	2.3	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|313117261|ref|YP_004044244.1|	-	0.019	14.9	0.1	0.033	14.1	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|313117261|ref|YP_004044244.1|	-	0.026	14.2	0.6	0.056	13.2	0.6	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|313117261|ref|YP_004044244.1|	-	0.049	13.1	0.0	10	5.5	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ABC2_membrane_2	PF12679.7	gi|313117262|ref|YP_004044245.1|	-	8e-19	68.0	25.6	1.3e-17	64.1	25.6	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|313117262|ref|YP_004044245.1|	-	0.072	12.6	9.9	0.22	11.1	9.7	1.9	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
HtaA	PF04213.13	gi|313117263|ref|YP_004044246.1|	-	2.1e-07	31.5	6.5	0.013	16.0	0.3	4.3	1	1	3	4	4	4	2	Htaa
Sarcoglycan_1	PF04790.13	gi|313117263|ref|YP_004044246.1|	-	4.4e-06	26.2	0.0	1.3	8.3	0.0	4.1	2	1	2	4	4	4	2	Sarcoglycan	complex	subunit	protein
DUF945	PF06097.11	gi|313117263|ref|YP_004044246.1|	-	8.2e-05	21.9	9.2	0.97	8.5	6.3	3.9	1	1	2	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF945)
YabP	PF07873.11	gi|313117263|ref|YP_004044246.1|	-	8.6e-05	22.3	7.0	0.37	10.6	0.0	5.8	5	2	1	6	6	6	1	YabP	family
DUF4968	PF16338.5	gi|313117263|ref|YP_004044246.1|	-	0.00024	21.4	7.3	0.49	10.7	0.4	6.4	1	1	4	6	6	6	1	Domain	of	unknown	function	(DUF4968)
DUF2345	PF10106.9	gi|313117263|ref|YP_004044246.1|	-	0.00026	20.9	0.0	0.89	9.4	0.0	3.2	2	2	1	3	3	3	2	Uncharacterized	protein	conserved	in	bacteria	(DUF2345)
Glyco_hydro_65C	PF03633.15	gi|313117263|ref|YP_004044246.1|	-	0.00035	20.4	11.4	3.3	7.7	0.1	7.2	4	3	3	8	8	8	1	Glycosyl	hydrolase	family	65,	C-terminal	domain
DUF2807	PF10988.8	gi|313117263|ref|YP_004044246.1|	-	0.0043	16.9	16.0	0.075	12.8	7.8	3.1	1	1	1	2	2	2	2	Putative	auto-transporter	adhesin,	head	GIN	domain
Imm50	PF15594.6	gi|313117263|ref|YP_004044246.1|	-	0.023	14.9	5.3	7.1	6.9	0.1	5.3	1	1	4	7	7	7	0	Immunity	protein	50
DUF3868	PF12984.7	gi|313117263|ref|YP_004044246.1|	-	0.03	14.1	2.4	71	3.3	0.0	5.1	3	2	1	5	5	5	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3868)
Ribosomal_L6	PF00347.23	gi|313117263|ref|YP_004044246.1|	-	0.041	14.6	1.5	0.56	10.9	0.1	3.5	3	1	0	3	3	3	0	Ribosomal	protein	L6
LEA_2	PF03168.13	gi|313117263|ref|YP_004044246.1|	-	0.061	13.9	0.0	42	4.8	0.0	3.9	2	1	1	3	3	3	0	Late	embryogenesis	abundant	protein
DNA_pol3_beta	PF00712.19	gi|313117263|ref|YP_004044246.1|	-	0.063	13.4	6.0	2.1	8.5	0.1	4.3	2	2	1	4	4	4	0	DNA	polymerase	III	beta	subunit,	N-terminal	domain
PCC_BT	PF18140.1	gi|313117263|ref|YP_004044246.1|	-	0.069	13.5	11.2	7.6	6.9	0.1	5.8	1	1	2	3	3	3	0	Propionyl-coenzyme	A	carboxylase	BT	domain
DUF108	PF01958.18	gi|313117263|ref|YP_004044246.1|	-	0.098	13.0	0.4	73	3.8	0.0	4.6	3	2	1	4	4	4	0	Domain	of	unknown	function	DUF108
DUF4302	PF14135.6	gi|313117263|ref|YP_004044246.1|	-	0.21	11.5	2.0	0.59	10.0	0.3	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4302)
MelC1	PF06236.11	gi|313117263|ref|YP_004044246.1|	-	0.33	11.1	1.9	39	4.4	0.2	3.4	2	2	1	3	3	3	0	Tyrosinase	co-factor	MelC1
HSP20	PF00011.21	gi|313117263|ref|YP_004044246.1|	-	4.3	7.5	22.8	4.1	7.6	0.8	6.0	2	2	3	7	7	7	0	Hsp20/alpha	crystallin	family
DUF2850	PF11012.8	gi|313117263|ref|YP_004044246.1|	-	4.8	7.5	11.7	22	5.4	0.1	5.4	2	2	4	6	6	6	0	Protein	of	unknown	function	(DUF2850)
MORN_2	PF07661.13	gi|313117264|ref|YP_004044247.1|	-	5e-05	23.1	0.0	16	6.2	0.0	5.2	5	0	0	5	5	5	1	MORN	repeat	variant
zinc_ribbon_9	PF14369.6	gi|313117264|ref|YP_004044247.1|	-	0.022	15.0	0.2	0.054	13.8	0.2	1.7	1	0	0	1	1	1	0	zinc-ribbon
DUF1936	PF09151.10	gi|313117264|ref|YP_004044247.1|	-	0.16	11.9	2.2	24	4.9	0.3	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF1936)
Pterin_4a	PF01329.19	gi|313117265|ref|YP_004044248.1|	-	1.3e-26	92.6	0.2	1.6e-26	92.3	0.2	1.1	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
SerH	PF06873.11	gi|313117265|ref|YP_004044248.1|	-	0.21	10.4	0.2	0.26	10.1	0.2	1.0	1	0	0	1	1	1	0	Cell	surface	immobilisation	antigen	SerH
FAD-oxidase_C	PF02913.19	gi|313117266|ref|YP_004044249.1|	-	4e-60	203.5	0.6	8.2e-60	202.5	0.6	1.5	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|313117266|ref|YP_004044249.1|	-	1.1e-37	128.9	0.6	4.1e-37	127.0	0.3	2.1	2	1	0	2	2	2	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|313117266|ref|YP_004044249.1|	-	3.2e-10	40.4	4.7	5.9e-10	39.6	4.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|313117266|ref|YP_004044249.1|	-	4.8e-10	39.7	5.3	1.1e-09	38.6	5.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|313117266|ref|YP_004044249.1|	-	2.3e-05	24.5	0.0	0.0029	17.8	0.0	2.7	3	0	0	3	3	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|313117266|ref|YP_004044249.1|	-	3.5e-05	23.8	4.4	0.014	15.5	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|313117266|ref|YP_004044249.1|	-	0.00031	21.3	4.9	0.00068	20.2	4.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|313117266|ref|YP_004044249.1|	-	0.00046	20.3	4.4	0.0014	18.7	4.5	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|313117266|ref|YP_004044249.1|	-	0.01	16.0	2.9	0.096	12.8	0.2	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|313117266|ref|YP_004044249.1|	-	0.012	15.7	9.5	0.47	10.7	1.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|313117266|ref|YP_004044249.1|	-	0.012	15.4	12.7	0.083	12.7	3.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|313117266|ref|YP_004044249.1|	-	0.081	13.5	12.5	0.11	13.0	2.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
ChitinaseA_N	PF08329.10	gi|313117266|ref|YP_004044249.1|	-	0.21	11.2	0.3	11	5.7	0.1	2.6	2	0	0	2	2	2	0	Chitinase	A,	N-terminal	domain
Fer4_6	PF12837.7	gi|313117266|ref|YP_004044249.1|	-	0.29	11.3	11.9	0.55	10.4	2.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|313117266|ref|YP_004044249.1|	-	0.3	11.3	2.8	0.48	10.6	1.0	2.2	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|313117266|ref|YP_004044249.1|	-	3.1	8.8	6.3	9.5	7.2	1.9	1.9	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|313117266|ref|YP_004044249.1|	-	3.9	8.1	5.8	5.9	7.5	0.1	3.2	4	0	0	4	4	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Glyoxalase	PF00903.25	gi|313117267|ref|YP_004044250.1|	-	3.5e-16	59.6	0.2	4e-16	59.4	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|313117267|ref|YP_004044250.1|	-	1.2e-13	51.3	0.1	5.8e-11	42.6	0.1	2.0	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|313117267|ref|YP_004044250.1|	-	8.9e-08	32.9	0.2	1.1e-07	32.6	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|313117267|ref|YP_004044250.1|	-	0.00016	21.8	0.0	0.002	18.2	0.0	2.0	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|313117267|ref|YP_004044250.1|	-	0.017	15.0	0.0	0.03	14.3	0.0	1.7	1	1	0	1	1	1	0	Glyoxalase-like	domain
Phage_Mu_Gp45	PF06890.12	gi|313117267|ref|YP_004044250.1|	-	0.028	14.2	0.1	0.44	10.3	0.0	2.1	2	1	0	2	2	2	0	Bacteriophage	Mu	Gp45	protein
HpcH_HpaI	PF03328.14	gi|313117268|ref|YP_004044251.1|	-	9.6e-09	34.7	0.0	3.5e-08	32.8	0.0	1.9	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
IclR	PF01614.18	gi|313117269|ref|YP_004044252.1|	-	2.7e-32	111.3	0.4	8.7e-32	109.7	0.1	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_20	PF12840.7	gi|313117269|ref|YP_004044252.1|	-	2e-06	27.8	0.1	4.9e-06	26.5	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|313117269|ref|YP_004044252.1|	-	6.4e-06	25.9	0.2	1.9e-05	24.3	0.2	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|313117269|ref|YP_004044252.1|	-	8e-05	22.4	0.0	0.00016	21.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|313117269|ref|YP_004044252.1|	-	0.0004	20.2	0.0	0.00092	19.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|313117269|ref|YP_004044252.1|	-	0.0015	18.4	0.1	0.006	16.5	0.0	2.0	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|313117269|ref|YP_004044252.1|	-	0.0017	18.2	0.0	0.0036	17.1	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|313117269|ref|YP_004044252.1|	-	0.0043	17.5	0.5	0.019	15.5	0.0	2.3	3	0	0	3	3	2	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|313117269|ref|YP_004044252.1|	-	0.018	14.8	0.0	0.049	13.4	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_24	PF13412.6	gi|313117269|ref|YP_004044252.1|	-	0.025	14.1	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|313117269|ref|YP_004044252.1|	-	0.036	14.0	1.2	0.057	13.4	0.1	1.9	2	0	0	2	2	1	0	Transcriptional	regulator	PadR-like	family
HTH_11	PF08279.12	gi|313117269|ref|YP_004044252.1|	-	0.047	13.6	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_34	PF13601.6	gi|313117269|ref|YP_004044252.1|	-	0.048	13.8	0.0	0.1	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.12	gi|313117269|ref|YP_004044252.1|	-	0.092	12.9	0.0	0.2	11.9	0.0	1.5	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_40	PF14493.6	gi|313117269|ref|YP_004044252.1|	-	0.13	12.7	0.2	0.96	10.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|313117269|ref|YP_004044252.1|	-	0.13	11.9	0.0	0.3	10.7	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Big_9	PF17963.1	gi|313117270|ref|YP_004044253.1|	-	3.7e-27	94.9	44.6	4.1e-15	56.3	19.5	10.3	5	3	4	11	11	11	2	Bacterial	Ig	domain
Cadherin_4	PF17803.1	gi|313117270|ref|YP_004044253.1|	-	2.2e-16	60.2	37.0	1.5e-09	38.3	11.9	10.7	8	4	0	8	8	8	2	Bacterial	cadherin-like	domain
Cadherin_5	PF17892.1	gi|313117270|ref|YP_004044253.1|	-	6.2e-09	35.7	29.5	1.9e-06	27.7	11.3	6.4	6	0	0	6	6	6	2	Cadherin-like	domain
MG2	PF01835.19	gi|313117270|ref|YP_004044253.1|	-	0.005	17.3	0.1	0.056	13.9	0.0	2.9	2	0	0	2	2	2	1	MG2	domain
PGF-CTERM	PF18204.1	gi|313117270|ref|YP_004044253.1|	-	0.023	14.7	4.7	0.047	13.7	4.7	1.5	1	0	0	1	1	1	0	PGF-CTERM	motif
Gmad2	PF10648.9	gi|313117270|ref|YP_004044253.1|	-	0.034	14.4	0.0	0.034	14.4	0.0	5.3	6	0	0	6	6	6	0	Immunoglobulin-like	domain	of	bacterial	spore	germination
SoxE	PF06525.11	gi|313117270|ref|YP_004044253.1|	-	0.48	9.9	5.2	0.11	11.9	0.5	2.4	2	0	0	2	2	2	0	Sulfocyanin	(SoxE)	domain
TENA_THI-4	PF03070.16	gi|313117271|ref|YP_004044254.1|	-	9.1e-50	169.4	0.0	1.1e-49	169.1	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.16	gi|313117272|ref|YP_004044255.1|	-	1.2e-24	87.4	0.0	1.4e-24	87.0	0.0	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
SSF	PF00474.17	gi|313117273|ref|YP_004044256.1|	-	4.8e-31	108.0	29.0	6.4e-31	107.6	29.0	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
TMEM191C	PF15194.6	gi|313117273|ref|YP_004044256.1|	-	0.23	11.6	3.6	0.39	10.9	0.1	2.6	2	0	0	2	2	2	0	TMEM191C	family
Nramp	PF01566.18	gi|313117275|ref|YP_004044258.1|	-	3.9e-64	216.9	35.5	3.9e-64	216.9	35.5	1.8	1	1	1	2	2	2	1	Natural	resistance-associated	macrophage	protein
PAZ	PF02170.22	gi|313117276|ref|YP_004044259.1|	-	0.13	12.1	0.0	0.13	12.1	0.0	1.1	1	0	0	1	1	1	0	PAZ	domain
PIN_5	PF08745.11	gi|313117277|ref|YP_004044260.1|	-	7.3e-77	257.5	0.3	8.4e-77	257.3	0.3	1.0	1	0	0	1	1	1	1	PINc	domain	ribonuclease
Lig_C	PF18330.1	gi|313117278|ref|YP_004044261.1|	-	6.1e-45	152.3	0.3	1.4e-44	151.1	0.2	1.7	2	0	0	2	2	2	1	Ligase	Pab1020	C-terminal	region
RNA_ligase	PF09414.10	gi|313117278|ref|YP_004044261.1|	-	8.6e-10	39.2	0.0	1.5e-09	38.4	0.0	1.4	1	0	0	1	1	1	1	RNA	ligase
CBS	PF00571.28	gi|313117279|ref|YP_004044262.1|	-	9.5e-26	90.0	5.7	6.3e-14	52.2	0.2	2.4	2	1	1	3	3	3	2	CBS	domain
DAGK_cat	PF00781.24	gi|313117279|ref|YP_004044262.1|	-	0.11	12.2	0.8	0.51	10.0	0.1	2.0	2	0	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
Na_H_Exchanger	PF00999.21	gi|313117280|ref|YP_004044263.1|	-	5.7e-34	117.5	42.7	7.7e-34	117.1	42.7	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|313117280|ref|YP_004044263.1|	-	1.1e-28	99.8	0.8	1.1e-28	99.8	0.8	2.0	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|313117280|ref|YP_004044263.1|	-	8.4e-09	35.1	0.0	2.8e-08	33.5	0.0	2.0	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|313117280|ref|YP_004044263.1|	-	1.3e-05	25.6	0.2	2.8e-05	24.5	0.2	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|313117280|ref|YP_004044263.1|	-	0.00066	20.2	1.4	0.0015	19.1	0.2	2.3	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|313117280|ref|YP_004044263.1|	-	0.00085	18.9	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|313117280|ref|YP_004044263.1|	-	0.001	19.0	1.2	0.0021	18.0	1.2	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|313117280|ref|YP_004044263.1|	-	0.0013	18.9	0.3	0.0041	17.4	0.3	1.9	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|313117280|ref|YP_004044263.1|	-	0.0014	18.3	0.1	0.0035	17.0	0.1	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Epimerase	PF01370.21	gi|313117280|ref|YP_004044263.1|	-	0.0022	17.5	0.3	0.0034	16.9	0.3	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_3	PF01494.19	gi|313117280|ref|YP_004044263.1|	-	0.003	16.9	0.1	0.0041	16.4	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_2	PF03446.15	gi|313117280|ref|YP_004044263.1|	-	0.015	15.4	0.1	0.036	14.2	0.1	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|313117280|ref|YP_004044263.1|	-	0.025	13.9	0.3	0.098	12.0	0.0	2.0	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|313117280|ref|YP_004044263.1|	-	0.063	13.8	0.1	0.17	12.4	0.1	1.8	1	0	0	1	1	1	0	XdhC	Rossmann	domain
DMT_6	PF04342.12	gi|313117280|ref|YP_004044263.1|	-	0.077	13.2	4.2	1.7	8.9	0.1	3.0	2	1	0	2	2	2	0	Putative	member	of	DMT	superfamily	(DUF486)
Usp	PF00582.26	gi|313117281|ref|YP_004044264.1|	-	3.5e-64	215.6	6.9	4.2e-33	114.8	2.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF5615	PF18480.1	gi|313117281|ref|YP_004044264.1|	-	0.015	15.1	0.9	0.54	10.1	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5615)
Asparaginase_C	PF17763.1	gi|313117281|ref|YP_004044264.1|	-	0.032	14.5	0.5	0.33	11.2	0.1	2.5	2	1	1	3	3	3	0	Glutaminase/Asparaginase	C-terminal	domain
FR47	PF08445.10	gi|313117281|ref|YP_004044264.1|	-	0.23	11.4	1.2	10	6.2	0.1	2.7	3	0	0	3	3	3	0	FR47-like	protein
HTH_20	PF12840.7	gi|313117282|ref|YP_004044265.1|	-	3.1e-10	39.9	0.3	4.9e-10	39.3	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|313117282|ref|YP_004044265.1|	-	6.1e-07	29.1	0.4	2e-06	27.5	0.3	2.0	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|313117282|ref|YP_004044265.1|	-	0.00038	20.3	0.0	0.00065	19.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|313117282|ref|YP_004044265.1|	-	0.0014	18.5	0.1	0.0034	17.2	0.1	1.6	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|313117282|ref|YP_004044265.1|	-	0.018	14.6	0.0	0.029	13.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|313117282|ref|YP_004044265.1|	-	0.029	14.2	0.0	0.052	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF742	PF05331.11	gi|313117282|ref|YP_004044265.1|	-	0.037	13.8	0.2	0.042	13.7	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
FUR	PF01475.19	gi|313117282|ref|YP_004044265.1|	-	0.038	14.1	0.0	0.068	13.3	0.0	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
ArsR	PF09824.9	gi|313117282|ref|YP_004044265.1|	-	0.14	11.7	0.0	0.18	11.4	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
HTH_10	PF04967.12	gi|313117283|ref|YP_004044266.1|	-	3.8e-22	77.8	0.2	5.9e-22	77.2	0.2	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|313117283|ref|YP_004044266.1|	-	1.4e-05	25.0	0.5	4.1e-05	23.5	0.5	1.9	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_5	PF01022.20	gi|313117283|ref|YP_004044266.1|	-	0.0016	18.3	0.0	0.0049	16.7	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|313117283|ref|YP_004044266.1|	-	0.0065	16.3	0.0	0.014	15.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
GerE	PF00196.19	gi|313117283|ref|YP_004044266.1|	-	0.024	14.2	0.1	0.94	9.1	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_24	PF13412.6	gi|313117283|ref|YP_004044266.1|	-	0.034	13.7	0.1	0.1	12.2	0.1	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|313117283|ref|YP_004044266.1|	-	0.064	13.2	0.1	0.19	11.7	0.1	1.8	1	1	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.19	gi|313117283|ref|YP_004044266.1|	-	0.077	13.2	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r3	PF04539.16	gi|313117283|ref|YP_004044266.1|	-	0.085	13.0	0.5	0.18	11.9	0.1	1.8	2	0	0	2	2	2	0	Sigma-70	region	3
HTH_20	PF12840.7	gi|313117283|ref|YP_004044266.1|	-	0.11	12.6	0.1	0.22	11.6	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Homeodomain	PF00046.29	gi|313117283|ref|YP_004044266.1|	-	0.12	12.2	0.1	0.3	10.9	0.1	1.6	1	0	0	1	1	1	0	Homeodomain
LexA_DNA_bind	PF01726.16	gi|313117283|ref|YP_004044266.1|	-	0.16	11.8	1.1	1.3	8.8	1.1	2.2	1	1	0	1	1	1	0	LexA	DNA	binding	domain
Zn-ribbon_8	PF09723.10	gi|313117284|ref|YP_004044267.1|	-	0.00029	20.9	0.3	0.00036	20.6	0.3	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
Elf1	PF05129.13	gi|313117284|ref|YP_004044267.1|	-	0.0013	18.7	0.2	0.0013	18.7	0.2	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
zf-ribbon_3	PF13248.6	gi|313117284|ref|YP_004044267.1|	-	0.0058	16.0	0.3	3.5	7.2	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|313117284|ref|YP_004044267.1|	-	0.033	14.2	0.3	0.042	13.9	0.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|313117284|ref|YP_004044267.1|	-	0.092	12.4	0.2	0.25	11.0	0.1	1.7	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
AA_permease_2	PF13520.6	gi|313117285|ref|YP_004044268.1|	-	4.9e-40	137.6	35.6	6.1e-40	137.3	35.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|313117285|ref|YP_004044268.1|	-	2.5e-35	122.0	34.2	3.2e-35	121.6	34.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|313117285|ref|YP_004044268.1|	-	0.0045	15.9	1.1	0.0045	15.9	1.1	3.2	3	1	1	4	4	4	1	Spore	germination	protein
Usp	PF00582.26	gi|313117286|ref|YP_004044269.1|	-	5.6e-09	36.6	7.1	2e-05	25.1	2.4	2.8	2	1	0	2	2	2	2	Universal	stress	protein	family
T2SSM_b	PF10741.9	gi|313117286|ref|YP_004044269.1|	-	0.15	11.9	1.8	14	5.5	0.1	2.7	2	1	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M	subtype	b
Copper-bind	PF00127.20	gi|313117287|ref|YP_004044270.1|	-	5.2e-19	68.5	0.1	1.3e-18	67.2	0.1	1.6	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|313117287|ref|YP_004044270.1|	-	7.8e-05	22.7	0.0	0.049	13.7	0.0	2.2	2	0	0	2	2	2	2	Cupredoxin-like	domain
DUF3493	PF11998.8	gi|313117287|ref|YP_004044270.1|	-	0.15	12.2	0.6	0.59	10.3	0.0	1.9	2	0	0	2	2	2	0	Low	psii	accumulation1	/	Rep27
Na_Ca_ex	PF01699.24	gi|313117288|ref|YP_004044271.1|	-	2.9e-38	131.2	32.2	7.3e-23	81.2	12.9	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF4730	PF15873.5	gi|313117288|ref|YP_004044271.1|	-	0.022	15.0	1.0	0.022	15.0	1.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4730)
CBS	PF00571.28	gi|313117289|ref|YP_004044272.1|	-	1.2e-31	108.9	18.4	9.6e-10	38.8	1.6	4.5	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|313117289|ref|YP_004044272.1|	-	0.05	14.4	0.0	0.13	13.0	0.0	1.8	1	0	0	1	1	1	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
DUF1508	PF07411.12	gi|313117289|ref|YP_004044272.1|	-	0.15	11.9	0.1	0.31	10.9	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1508)
GATase	PF00117.28	gi|313117290|ref|YP_004044273.1|	-	8.9e-20	71.3	0.0	1.2e-19	70.8	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|313117290|ref|YP_004044273.1|	-	1.5e-06	28.1	0.1	9.8e-06	25.5	0.1	2.3	1	1	0	1	1	1	1	Peptidase	C26
HTS	PF04204.16	gi|313117290|ref|YP_004044273.1|	-	0.0082	15.1	0.0	0.015	14.2	0.0	1.4	1	1	0	1	1	1	1	Homoserine	O-succinyltransferase
UPF0047	PF01894.17	gi|313117292|ref|YP_004044275.1|	-	3.1e-38	130.5	0.0	3.6e-38	130.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Usp	PF00582.26	gi|313117293|ref|YP_004044276.1|	-	1.3e-26	93.8	0.4	1.5e-26	93.6	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
TPR_12	PF13424.6	gi|313117293|ref|YP_004044276.1|	-	0.05	13.9	0.1	0.71	10.2	0.1	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Porin_OmpG	PF09381.10	gi|313117294|ref|YP_004044277.1|	-	0.032	14.0	0.1	0.038	13.8	0.1	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	G	(OmpG)
E1-E2_ATPase	PF00122.20	gi|313117295|ref|YP_004044278.1|	-	1.5e-45	154.9	0.5	1.5e-45	154.9	0.5	2.0	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|313117295|ref|YP_004044278.1|	-	3.2e-34	119.1	2.4	6.2e-34	118.1	2.4	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|313117295|ref|YP_004044278.1|	-	3.8e-08	33.6	0.0	1.2e-07	32.0	0.0	2.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|313117295|ref|YP_004044278.1|	-	0.0016	18.3	0.1	0.0026	17.6	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HCV_NS4a	PF01006.20	gi|313117295|ref|YP_004044278.1|	-	0.034	13.9	4.0	0.06	13.1	1.7	2.7	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	protein	NS4a
DsbD_2	PF13386.6	gi|313117296|ref|YP_004044279.1|	-	1.3e-43	149.3	14.4	1.5e-43	149.1	14.4	1.0	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
COX2	PF00116.20	gi|313117299|ref|YP_004044282.1|	-	1e-10	41.5	0.1	1.4e-10	41.1	0.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|313117299|ref|YP_004044282.1|	-	0.011	15.9	0.0	0.016	15.3	0.0	1.3	1	0	0	1	1	1	0	Cupredoxin-like	domain
COX2-transmemb	PF09125.10	gi|313117299|ref|YP_004044282.1|	-	0.02	14.6	0.6	0.038	13.8	0.6	1.4	1	0	0	1	1	1	0	Cytochrome	C	oxidase	subunit	II,	transmembrane
UCR_Fe-S_N	PF10399.9	gi|313117299|ref|YP_004044282.1|	-	0.2	11.0	0.6	0.4	10.1	0.6	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
COX1	PF00115.20	gi|313117300|ref|YP_004044283.1|	-	8.1e-92	308.3	64.4	1e-90	304.7	62.8	2.0	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
SNARE_assoc	PF09335.11	gi|313117304|ref|YP_004044287.1|	-	2.1e-23	83.1	5.7	2.1e-23	83.1	5.7	2.4	2	1	0	2	2	2	1	SNARE	associated	Golgi	protein
CD20	PF04103.15	gi|313117304|ref|YP_004044287.1|	-	9.6	6.3	12.4	0.32	11.1	6.3	1.6	2	0	0	2	2	2	0	CD20-like	family
MCPsignal	PF00015.21	gi|313117305|ref|YP_004044288.1|	-	3.1e-42	144.3	26.7	3.1e-42	144.3	26.7	4.0	2	1	2	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|313117305|ref|YP_004044288.1|	-	3.5e-24	85.9	1.0	3.5e-24	85.9	1.0	6.3	4	3	2	6	6	6	2	Cache	domain
HAMP	PF00672.25	gi|313117305|ref|YP_004044288.1|	-	1.4e-13	51.0	0.4	1.4e-13	51.0	0.4	4.1	4	1	0	4	4	4	2	HAMP	domain
Cache_3-Cache_2	PF17201.4	gi|313117305|ref|YP_004044288.1|	-	4.4e-13	49.2	3.5	5.5e-11	42.3	0.6	4.9	4	1	1	6	6	6	2	Cache	3/Cache	2	fusion	domain
dCache_2	PF08269.11	gi|313117305|ref|YP_004044288.1|	-	6.6e-07	28.8	17.5	1.3e-06	27.9	0.3	4.5	3	1	1	4	4	4	2	Cache	domain
sCache_2	PF17200.4	gi|313117305|ref|YP_004044288.1|	-	1.2e-06	28.5	1.2	1.2e-06	28.5	1.2	4.4	3	1	1	4	4	4	1	Single	Cache	domain	2
DUF948	PF06103.11	gi|313117305|ref|YP_004044288.1|	-	0.037	14.3	50.1	0.06	13.6	3.2	5.8	5	2	1	7	7	5	0	Bacterial	protein	of	unknown	function	(DUF948)
EzrA	PF06160.12	gi|313117305|ref|YP_004044288.1|	-	0.056	11.6	32.5	0.0058	14.9	15.2	2.5	2	1	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
Laminin_II	PF06009.12	gi|313117305|ref|YP_004044288.1|	-	0.076	13.0	42.5	0.019	15.0	4.7	4.9	2	2	3	5	5	5	0	Laminin	Domain	II
CorA	PF01544.18	gi|313117305|ref|YP_004044288.1|	-	0.54	9.5	25.8	1.4	8.2	5.8	3.9	1	1	3	4	4	4	0	CorA-like	Mg2+	transporter	protein
YkyA	PF10368.9	gi|313117305|ref|YP_004044288.1|	-	0.87	9.2	41.7	5.2	6.7	12.2	3.9	2	2	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
DUF3106	PF11304.8	gi|313117305|ref|YP_004044288.1|	-	1.6	9.2	8.4	0.19	12.2	1.6	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3106)
Laminin_I	PF06008.14	gi|313117305|ref|YP_004044288.1|	-	3.7	7.2	40.5	1.3	8.7	10.0	3.8	1	1	2	3	3	3	0	Laminin	Domain	I
DUF21	PF01595.20	gi|313117306|ref|YP_004044289.1|	-	1.1e-30	106.6	0.1	1.5e-30	106.2	0.1	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|313117306|ref|YP_004044289.1|	-	7.9e-13	48.7	2.1	3.1e-07	30.7	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
Pribosyltran	PF00156.27	gi|313117307|ref|YP_004044290.1|	-	3e-26	91.8	0.0	5.2e-26	91.1	0.0	1.3	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|313117307|ref|YP_004044290.1|	-	0.0011	18.5	0.0	0.0019	17.7	0.0	1.6	1	1	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|313117307|ref|YP_004044290.1|	-	0.008	15.7	0.0	0.021	14.3	0.0	1.7	2	0	0	2	2	2	1	Phosphoribosyl	transferase
PALP	PF00291.25	gi|313117307|ref|YP_004044290.1|	-	0.076	12.4	1.8	0.15	11.4	0.3	1.9	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Hydrolase_4	PF12146.8	gi|313117308|ref|YP_004044291.1|	-	1.5e-08	34.2	0.1	0.0036	16.6	0.0	2.3	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|313117308|ref|YP_004044291.1|	-	4.8e-08	33.9	0.9	0.0039	17.8	0.0	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|313117308|ref|YP_004044291.1|	-	2.1e-07	30.9	0.0	0.0041	16.8	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
DLH	PF01738.18	gi|313117308|ref|YP_004044291.1|	-	4.1e-07	29.8	0.0	1e-06	28.5	0.0	1.6	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|313117308|ref|YP_004044291.1|	-	6.2e-05	22.6	0.7	0.27	10.7	0.2	2.9	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
BAAT_C	PF08840.11	gi|313117308|ref|YP_004044291.1|	-	0.00025	21.0	0.0	0.12	12.3	0.0	2.1	1	1	1	2	2	2	2	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S15	PF02129.18	gi|313117308|ref|YP_004044291.1|	-	0.0012	18.5	0.1	0.031	13.9	0.1	2.0	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_2	PF02230.16	gi|313117308|ref|YP_004044291.1|	-	0.046	13.5	0.0	3.4	7.4	0.0	2.1	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
PAF-AH_p_II	PF03403.13	gi|313117308|ref|YP_004044291.1|	-	0.14	10.7	0.0	7.8	4.9	0.0	2.0	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
SBP_bac_8	PF13416.6	gi|313117309|ref|YP_004044292.1|	-	3.6e-49	168.1	9.6	5.1e-49	167.6	9.6	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|313117309|ref|YP_004044292.1|	-	6e-30	105.3	11.2	8.7e-30	104.7	11.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|313117309|ref|YP_004044292.1|	-	0.00012	21.6	0.1	0.073	12.5	0.0	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|313117309|ref|YP_004044292.1|	-	0.0015	18.4	0.8	0.57	9.9	0.1	2.5	2	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|313117309|ref|YP_004044292.1|	-	0.02	14.7	0.1	0.051	13.4	0.1	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Helo_like_N	PF17111.5	gi|313117309|ref|YP_004044292.1|	-	0.069	12.5	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	Fungal	N-terminal	domain	of	STAND	proteins
BPD_transp_1	PF00528.22	gi|313117310|ref|YP_004044293.1|	-	2.9e-13	49.9	13.5	2.9e-13	49.9	13.5	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|313117311|ref|YP_004044294.1|	-	8e-17	61.6	17.4	8e-17	61.6	17.4	1.9	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|313117312|ref|YP_004044295.1|	-	9.8e-33	113.6	0.0	1.6e-32	112.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|313117312|ref|YP_004044295.1|	-	3.5e-11	43.8	0.2	1.5e-10	41.8	0.2	2.2	1	0	0	1	1	1	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|313117312|ref|YP_004044295.1|	-	1.9e-10	40.8	0.5	1.9e-09	37.6	0.1	2.4	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|313117312|ref|YP_004044295.1|	-	4.7e-07	29.9	0.4	0.022	14.6	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|313117312|ref|YP_004044295.1|	-	8.2e-05	23.1	0.0	0.00079	19.9	0.0	2.5	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
Rad17	PF03215.15	gi|313117312|ref|YP_004044295.1|	-	0.00051	20.0	0.0	0.00083	19.3	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|313117312|ref|YP_004044295.1|	-	0.0016	18.8	0.2	0.0028	18.0	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|313117312|ref|YP_004044295.1|	-	0.0019	18.6	0.1	0.0034	17.8	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|313117312|ref|YP_004044295.1|	-	0.0035	16.8	0.0	0.061	12.7	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|313117312|ref|YP_004044295.1|	-	0.0051	16.7	0.0	0.0089	16.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
TOBE	PF03459.17	gi|313117312|ref|YP_004044295.1|	-	0.016	15.5	0.4	0.046	14.0	0.1	2.0	2	0	0	2	2	2	0	TOBE	domain
Mg_chelatase	PF01078.21	gi|313117312|ref|YP_004044295.1|	-	0.02	14.3	0.0	0.054	12.9	0.0	1.7	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|313117312|ref|YP_004044295.1|	-	0.02	15.0	0.0	0.045	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|313117312|ref|YP_004044295.1|	-	0.029	14.1	0.1	0.054	13.2	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|313117312|ref|YP_004044295.1|	-	0.052	14.0	0.0	0.11	13.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|313117312|ref|YP_004044295.1|	-	0.059	13.1	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|313117312|ref|YP_004044295.1|	-	0.094	12.3	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|313117312|ref|YP_004044295.1|	-	0.11	12.4	0.4	0.5	10.4	0.1	2.2	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.6	gi|313117312|ref|YP_004044295.1|	-	0.14	12.4	0.1	0.41	10.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|313117312|ref|YP_004044295.1|	-	0.26	11.8	0.0	0.43	11.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|313117312|ref|YP_004044295.1|	-	0.3	10.7	0.0	0.49	10.0	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF2207	PF09972.9	gi|313117313|ref|YP_004044296.1|	-	0.74	8.5	5.8	2.9	6.5	0.8	2.0	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2207)
Lipase_chap	PF03280.14	gi|313117315|ref|YP_004044298.1|	-	0.37	10.7	2.6	9.7	6.1	0.3	2.2	2	0	0	2	2	2	0	Proteobacterial	lipase	chaperone	protein
Peripla_BP_2	PF01497.18	gi|313117316|ref|YP_004044299.1|	-	4.4e-12	46.1	0.0	6.1e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
Glyco_hyd_65N_2	PF14498.6	gi|313117316|ref|YP_004044299.1|	-	0.072	12.9	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	N-terminal	domain
Amelotin	PF15757.5	gi|313117316|ref|YP_004044299.1|	-	0.085	12.4	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	Amelotin
HEAT_2	PF13646.6	gi|313117317|ref|YP_004044300.1|	-	4.9e-14	52.5	19.4	3.8e-07	30.4	2.3	3.7	1	1	2	3	3	3	3	HEAT	repeats
HEAT_EZ	PF13513.6	gi|313117317|ref|YP_004044300.1|	-	5.7e-12	45.9	12.4	0.0017	18.8	0.6	5.2	1	1	4	5	5	5	4	HEAT-like	repeat
HEAT	PF02985.22	gi|313117317|ref|YP_004044300.1|	-	1.5e-07	31.1	8.5	0.018	15.3	0.1	5.1	6	0	0	6	6	6	3	HEAT	repeat
Cnd1	PF12717.7	gi|313117317|ref|YP_004044300.1|	-	1.5e-07	31.6	0.0	0.014	15.4	0.0	3.0	1	1	2	3	3	3	3	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.20	gi|313117317|ref|YP_004044300.1|	-	0.00019	20.1	0.0	0.00096	17.8	0.0	2.1	1	1	1	2	2	2	1	Adaptin	N	terminal	region
DZR	PF12773.7	gi|313117317|ref|YP_004044300.1|	-	0.0049	16.9	0.9	0.0099	15.9	0.9	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|313117317|ref|YP_004044300.1|	-	0.015	14.7	6.6	0.053	12.9	6.6	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
RTP1_C1	PF10363.9	gi|313117317|ref|YP_004044300.1|	-	0.036	14.2	0.0	0.6	10.3	0.0	2.6	2	1	0	2	2	2	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
CLASP_N	PF12348.8	gi|313117317|ref|YP_004044300.1|	-	0.078	12.5	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	CLASP	N	terminal
zinc_ribbon_2	PF13240.6	gi|313117317|ref|YP_004044300.1|	-	0.089	12.5	4.0	0.41	10.4	4.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
HEAT_PBS	PF03130.16	gi|313117317|ref|YP_004044300.1|	-	0.13	13.0	12.9	7.6	7.5	1.1	4.9	4	1	0	4	4	4	0	PBS	lyase	HEAT-like	repeat
Zn-ribbon_8	PF09723.10	gi|313117317|ref|YP_004044300.1|	-	8.1	6.7	8.0	20	5.4	0.6	2.6	1	1	1	2	2	2	0	Zinc	ribbon	domain
Cdc6_C	PF09079.11	gi|313117318|ref|YP_004044301.1|	-	2.3e-15	56.4	0.0	5.1e-15	55.2	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|313117318|ref|YP_004044301.1|	-	3.5e-10	40.3	0.0	7.6e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|313117318|ref|YP_004044301.1|	-	2.7e-09	37.6	0.1	1.9e-08	34.9	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_32	PF13654.6	gi|313117318|ref|YP_004044301.1|	-	0.0021	16.9	0.2	0.11	11.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|313117318|ref|YP_004044301.1|	-	0.0025	18.2	0.0	0.0088	16.5	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|313117318|ref|YP_004044301.1|	-	0.0043	17.4	0.0	0.0088	16.4	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
ATPase_2	PF01637.18	gi|313117318|ref|YP_004044301.1|	-	0.0087	16.0	0.0	0.018	14.9	0.0	1.5	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|313117318|ref|YP_004044301.1|	-	0.017	14.7	0.0	0.075	12.5	0.0	1.9	2	1	0	2	2	2	0	P-loop	containing	dynein	motor	region
PIF1	PF05970.14	gi|313117318|ref|YP_004044301.1|	-	0.024	13.8	0.0	0.051	12.7	0.0	1.4	2	0	0	2	2	2	0	PIF1-like	helicase
NB-ARC	PF00931.22	gi|313117318|ref|YP_004044301.1|	-	0.027	13.6	0.0	0.05	12.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
T2SSE	PF00437.20	gi|313117318|ref|YP_004044301.1|	-	0.031	13.3	0.0	0.062	12.4	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Sigma54_activat	PF00158.26	gi|313117318|ref|YP_004044301.1|	-	0.032	13.9	0.1	0.071	12.8	0.0	1.6	2	0	0	2	2	1	0	Sigma-54	interaction	domain
RsgA_GTPase	PF03193.16	gi|313117318|ref|YP_004044301.1|	-	0.037	13.9	0.0	0.099	12.5	0.0	1.7	2	0	0	2	2	1	0	RsgA	GTPase
DEAD	PF00270.29	gi|313117318|ref|YP_004044301.1|	-	0.041	13.7	0.0	1.1	9.0	0.0	2.2	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
Kinesin	PF00225.23	gi|313117318|ref|YP_004044301.1|	-	0.057	12.3	0.0	0.088	11.7	0.0	1.3	1	0	0	1	1	1	0	Kinesin	motor	domain
NACHT	PF05729.12	gi|313117318|ref|YP_004044301.1|	-	0.065	13.1	0.0	0.16	11.9	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.9	gi|313117318|ref|YP_004044301.1|	-	0.1	11.5	0.0	0.95	8.3	0.0	2.0	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_5	PF07728.14	gi|313117318|ref|YP_004044301.1|	-	0.11	12.5	0.0	0.46	10.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.6	gi|313117318|ref|YP_004044301.1|	-	0.11	12.1	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|313117318|ref|YP_004044301.1|	-	0.13	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AFOR_C	PF01314.18	gi|313117319|ref|YP_004044302.1|	-	1.4e-77	261.3	0.1	2.3e-77	260.6	0.1	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|313117319|ref|YP_004044302.1|	-	5.1e-60	202.7	0.3	8.5e-60	202.0	0.3	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
SBP_bac_6	PF13343.6	gi|313117320|ref|YP_004044303.1|	-	2.1e-17	63.4	0.0	3.5e-17	62.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|313117320|ref|YP_004044303.1|	-	2.4e-17	63.6	0.7	4.4e-17	62.8	0.7	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|313117320|ref|YP_004044303.1|	-	9.7e-15	55.3	3.3	1e-14	55.3	1.2	1.8	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|313117320|ref|YP_004044303.1|	-	8.1e-11	42.1	0.0	2e-10	40.9	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|313117321|ref|YP_004044304.1|	-	7.2e-11	42.1	15.5	1.2e-10	41.4	15.5	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|313117322|ref|YP_004044305.1|	-	4.3e-09	36.4	11.7	4.3e-09	36.4	11.7	2.2	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|313117323|ref|YP_004044306.1|	-	7.3e-37	126.9	0.0	9.8e-37	126.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117323|ref|YP_004044306.1|	-	7.7e-09	35.8	0.2	0.00021	21.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|313117323|ref|YP_004044306.1|	-	0.00085	19.3	0.0	0.0014	18.6	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|313117323|ref|YP_004044306.1|	-	0.0079	16.5	0.1	0.021	15.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|313117323|ref|YP_004044306.1|	-	0.0094	15.4	0.5	0.61	9.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|313117323|ref|YP_004044306.1|	-	0.016	15.6	1.8	0.052	13.9	1.8	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
PRK	PF00485.18	gi|313117323|ref|YP_004044306.1|	-	0.067	12.9	1.0	0.13	12.0	0.6	1.6	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_23	PF13476.6	gi|313117323|ref|YP_004044306.1|	-	0.11	13.0	0.4	0.19	12.2	0.4	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|313117323|ref|YP_004044306.1|	-	0.12	12.8	1.5	1.1	9.7	1.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|313117323|ref|YP_004044306.1|	-	0.15	12.1	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|313117323|ref|YP_004044306.1|	-	0.17	11.0	0.2	0.29	10.3	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_29	PF13555.6	gi|313117323|ref|YP_004044306.1|	-	0.21	11.4	0.4	0.41	10.4	0.4	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_24	PF13479.6	gi|313117323|ref|YP_004044306.1|	-	0.21	11.3	0.1	0.35	10.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|313117323|ref|YP_004044306.1|	-	0.27	11.4	0.7	0.91	9.7	0.7	2.0	1	1	0	1	1	1	0	AAA	domain
PQQ_2	PF13360.6	gi|313117324|ref|YP_004044307.1|	-	3.1e-37	128.4	13.9	1.1e-19	70.9	3.1	2.3	1	1	1	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|313117324|ref|YP_004044307.1|	-	2.8e-22	78.5	28.7	0.0035	17.8	0.0	8.9	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|313117324|ref|YP_004044307.1|	-	3.2e-18	64.7	16.0	0.00036	20.3	0.1	7.9	8	1	0	8	8	8	5	PQQ	enzyme	repeat
DUF1391	PF07151.12	gi|313117324|ref|YP_004044307.1|	-	0.96	9.3	2.8	28	4.6	0.0	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1391)
ABC2_membrane_2	PF12679.7	gi|313117326|ref|YP_004044309.1|	-	2.2e-13	50.2	5.8	7.1e-12	45.2	5.8	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|313117326|ref|YP_004044309.1|	-	1.2e-05	25.3	0.3	2.6e-05	24.2	0.0	1.6	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
Ycf4	PF02392.16	gi|313117326|ref|YP_004044309.1|	-	3	7.4	5.2	0.39	10.3	1.1	1.5	2	0	0	2	2	2	0	Ycf4
ABC_tran	PF00005.27	gi|313117327|ref|YP_004044310.1|	-	1.1e-27	97.3	0.0	2.8e-27	95.9	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|313117327|ref|YP_004044310.1|	-	1.3e-09	38.3	4.3	2.1e-06	27.8	0.0	2.4	2	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|313117327|ref|YP_004044310.1|	-	8.5e-05	23.2	0.3	0.00014	22.5	0.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|313117327|ref|YP_004044310.1|	-	0.013	15.2	0.2	0.026	14.3	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|313117327|ref|YP_004044310.1|	-	0.014	15.8	0.0	0.027	14.8	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|313117327|ref|YP_004044310.1|	-	0.054	14.0	0.5	0.1	13.1	0.5	1.4	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|313117327|ref|YP_004044310.1|	-	0.083	12.3	0.4	2.9	7.3	0.1	2.5	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
DUF2529	PF10740.9	gi|313117327|ref|YP_004044310.1|	-	0.11	12.2	0.4	0.17	11.5	0.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2529)
ABC2_membrane_2	PF12679.7	gi|313117330|ref|YP_004044313.1|	-	3.9e-36	124.8	37.9	3.5e-21	75.7	10.8	3.1	2	1	0	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|313117330|ref|YP_004044313.1|	-	2.1e-07	30.4	45.6	1.9e-05	23.9	18.4	2.5	2	1	0	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|313117330|ref|YP_004044313.1|	-	6.2e-05	23.0	5.2	6.2e-05	23.0	5.2	2.9	3	0	0	3	3	3	2	ABC-2	family	transporter	protein
Ldr_toxin	PF13940.6	gi|313117330|ref|YP_004044313.1|	-	0.17	12.0	3.5	6.2	7.0	0.2	3.6	3	0	0	3	3	3	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
ABC_tran	PF00005.27	gi|313117331|ref|YP_004044314.1|	-	2.1e-28	99.6	0.0	3.8e-28	98.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117331|ref|YP_004044314.1|	-	7.5e-13	49.0	0.1	3.3e-07	30.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|313117331|ref|YP_004044314.1|	-	1.5e-05	24.6	0.0	2.9e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.6	gi|313117331|ref|YP_004044314.1|	-	0.00039	21.1	0.0	0.00089	19.9	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|313117331|ref|YP_004044314.1|	-	0.0023	18.5	0.2	0.0038	17.7	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|313117331|ref|YP_004044314.1|	-	0.012	15.6	0.0	0.024	14.5	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|313117331|ref|YP_004044314.1|	-	0.019	14.7	0.0	0.035	13.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|313117331|ref|YP_004044314.1|	-	0.025	14.1	0.0	0.044	13.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
SMC_N	PF02463.19	gi|313117331|ref|YP_004044314.1|	-	0.029	13.8	0.0	0.11	11.9	0.0	1.8	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
BCA_ABC_TP_C	PF12399.8	gi|313117331|ref|YP_004044314.1|	-	0.053	13.5	0.1	0.09	12.7	0.1	1.4	1	0	0	1	1	1	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
MeaB	PF03308.16	gi|313117331|ref|YP_004044314.1|	-	0.06	12.3	0.0	0.22	10.5	0.0	1.8	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRP54	PF00448.22	gi|313117331|ref|YP_004044314.1|	-	0.066	12.8	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_27	PF13514.6	gi|313117331|ref|YP_004044314.1|	-	0.085	12.4	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF3215	PF11503.8	gi|313117331|ref|YP_004044314.1|	-	0.092	12.6	0.0	0.25	11.2	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3215)
Tubulin	PF00091.25	gi|313117335|ref|YP_004044318.1|	-	2.9e-28	99.4	0.0	4.4e-28	98.8	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|313117335|ref|YP_004044318.1|	-	0.048	12.8	1.3	0.18	11.0	0.3	2.2	1	1	1	3	3	3	0	Tubulin	like
DUF1616	PF07760.11	gi|313117336|ref|YP_004044319.1|	-	2.3e-115	385.0	1.3	2.7e-115	384.8	1.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4131	PF13567.6	gi|313117336|ref|YP_004044319.1|	-	2.7	7.6	10.1	5.8	6.5	0.1	3.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
CarboxypepD_reg	PF13620.6	gi|313117337|ref|YP_004044320.1|	-	1.2e-05	25.4	18.1	0.023	14.9	3.8	4.7	3	2	1	4	4	4	2	Carboxypeptidase	regulatory-like	domain
MG4	PF17789.1	gi|313117337|ref|YP_004044320.1|	-	2.8e-05	24.2	2.6	0.047	13.8	0.2	3.2	2	0	0	2	2	2	2	Macroglobulin	domain	MG4
DUF4129	PF13559.6	gi|313117337|ref|YP_004044320.1|	-	6.5e-05	23.1	1.2	0.00046	20.4	1.2	2.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
CarbopepD_reg_2	PF13715.6	gi|313117337|ref|YP_004044320.1|	-	0.0021	18.0	3.3	2.4	8.2	0.0	4.0	3	0	0	3	3	3	2	CarboxypepD_reg-like	domain
CaMBD	PF02888.16	gi|313117337|ref|YP_004044320.1|	-	0.0072	16.5	0.2	0.017	15.3	0.2	1.5	1	0	0	1	1	1	1	Calmodulin	binding	domain
EF-G-binding_N	PF07299.11	gi|313117337|ref|YP_004044320.1|	-	0.79	10.3	3.2	9.3	6.9	0.0	3.1	3	0	0	3	3	3	0	Elongation	factor	G-binding	protein,	N-terminal
DUF58	PF01882.18	gi|313117338|ref|YP_004044321.1|	-	1.3e-19	70.3	0.0	2.8e-19	69.2	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.6	gi|313117338|ref|YP_004044321.1|	-	0.0015	19.2	0.0	0.0038	17.8	0.0	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
7tm_1	PF00001.21	gi|313117339|ref|YP_004044322.1|	-	3.9	6.7	6.8	1.2	8.4	2.2	1.9	2	0	0	2	2	2	0	7	transmembrane	receptor	(rhodopsin	family)
AAA_3	PF07726.11	gi|313117341|ref|YP_004044324.1|	-	2.5e-61	205.3	0.5	6.3e-61	204.0	0.2	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|313117341|ref|YP_004044324.1|	-	5.2e-20	71.1	0.2	1.3e-19	69.8	0.2	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|313117341|ref|YP_004044324.1|	-	1.7e-13	50.7	0.0	3.1e-13	49.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|313117341|ref|YP_004044324.1|	-	8.1e-06	25.4	0.5	0.0081	15.6	0.1	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|313117341|ref|YP_004044324.1|	-	8.1e-06	25.1	0.0	1.3e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|313117341|ref|YP_004044324.1|	-	3.7e-05	23.5	0.1	0.00017	21.3	0.1	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|313117341|ref|YP_004044324.1|	-	0.00012	21.8	0.2	0.0013	18.5	0.2	2.5	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|313117341|ref|YP_004044324.1|	-	0.00026	21.4	1.4	0.00055	20.4	0.2	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|313117341|ref|YP_004044324.1|	-	0.056	13.8	0.1	0.31	11.4	0.1	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|313117341|ref|YP_004044324.1|	-	0.065	12.9	1.2	0.55	9.9	1.2	2.3	1	1	0	1	1	1	0	AAA	domain
DUF4350	PF14258.6	gi|313117342|ref|YP_004044325.1|	-	1.3e-12	48.0	9.5	4.3e-09	36.7	0.2	3.6	3	1	1	4	4	4	3	Domain	of	unknown	function	(DUF4350)
ABC_transp_aux	PF09822.9	gi|313117342|ref|YP_004044325.1|	-	0.015	14.8	0.0	0.023	14.2	0.0	1.3	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
DUF4159	PF13709.6	gi|313117342|ref|YP_004044325.1|	-	0.043	13.2	0.0	0.14	11.6	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4159)
DUF3429	PF11911.8	gi|313117343|ref|YP_004044326.1|	-	0.01	16.2	2.9	0.012	15.9	2.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3429)
DMT_YdcZ	PF04657.13	gi|313117343|ref|YP_004044326.1|	-	0.073	13.3	3.1	0.17	12.2	3.3	1.5	1	1	0	1	1	1	0	Putative	inner	membrane	exporter,	YdcZ
TPPK_C	PF12555.8	gi|313117343|ref|YP_004044326.1|	-	0.2	11.7	4.4	6.8	6.8	1.8	2.3	2	0	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
DUF2537	PF10801.8	gi|313117343|ref|YP_004044326.1|	-	0.22	11.7	6.6	0.3	11.4	6.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2537)
CARDB	PF07705.11	gi|313117345|ref|YP_004044328.1|	-	3.2e-24	85.1	91.0	5.3e-08	33.0	6.8	10.7	11	1	1	12	12	12	6	CARDB
TED_complement	PF07678.14	gi|313117345|ref|YP_004044328.1|	-	4.6e-11	42.3	2.4	2.9e-05	23.2	0.1	2.8	1	1	2	3	3	3	2	A-macroglobulin	TED	domain
Prenyltrans	PF00432.21	gi|313117345|ref|YP_004044328.1|	-	1.7e-06	27.6	5.8	6.4	6.6	0.2	5.4	5	0	0	5	5	5	2	Prenyltransferase	and	squalene	oxidase	repeat
SQHop_cyclase_C	PF13243.6	gi|313117345|ref|YP_004044328.1|	-	0.00014	21.1	13.9	0.0087	15.2	1.2	3.2	1	1	1	3	3	3	3	Squalene-hopene	cyclase	C-terminal	domain
Fn3-like	PF14310.6	gi|313117345|ref|YP_004044328.1|	-	0.0032	17.5	0.9	6.3	7.0	0.1	5.2	4	0	0	4	4	4	1	Fibronectin	type	III-like	domain
Y_Y_Y	PF07495.13	gi|313117345|ref|YP_004044328.1|	-	0.049	13.6	0.8	6.7	6.7	0.0	4.5	4	0	0	4	4	4	0	Y_Y_Y	domain
DUF2393	PF09624.10	gi|313117345|ref|YP_004044328.1|	-	0.059	13.4	0.0	17	5.4	0.0	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2393)
Inhibitor_I42	PF09394.10	gi|313117345|ref|YP_004044328.1|	-	0.15	12.5	3.0	4.1	7.9	0.0	4.4	3	0	0	3	3	3	0	Chagasin	family	peptidase	inhibitor	I42
Lysyl_oxidase	PF01186.17	gi|313117345|ref|YP_004044328.1|	-	0.21	11.2	1.2	2.3	7.8	0.1	2.3	2	0	0	2	2	2	0	Lysyl	oxidase
SQHop_cyclase_N	PF13249.6	gi|313117345|ref|YP_004044328.1|	-	0.33	10.0	3.5	9.6	5.2	0.1	3.3	3	1	1	4	4	4	0	Squalene-hopene	cyclase	N-terminal	domain
YtkA	PF13115.6	gi|313117345|ref|YP_004044328.1|	-	8.6	7.0	21.0	8.8	7.0	0.1	7.6	7	1	0	7	7	7	0	YtkA-like
Dockerin_1	PF00404.18	gi|313117346|ref|YP_004044329.1|	-	1.8e-09	37.7	3.1	1.8e-09	37.7	3.1	2.8	2	0	0	2	2	2	1	Dockerin	type	I	domain
PEGA	PF08308.11	gi|313117346|ref|YP_004044329.1|	-	0.005	16.7	2.0	0.23	11.4	0.2	3.2	3	0	0	3	3	3	1	PEGA	domain
YtkA	PF13115.6	gi|313117346|ref|YP_004044329.1|	-	0.022	15.4	8.7	4	8.1	0.2	4.2	4	1	0	4	4	4	0	YtkA-like
PGF-CTERM	PF18204.1	gi|313117347|ref|YP_004044330.1|	-	9.1e-08	31.8	7.5	2e-07	30.8	7.5	1.6	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF3244	PF11589.8	gi|313117349|ref|YP_004044332.1|	-	2.6e-06	27.4	1.4	0.059	13.5	0.1	2.7	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3244)
SOG2	PF10428.9	gi|313117349|ref|YP_004044332.1|	-	0.061	12.5	20.4	0.082	12.1	20.4	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
PAC3	PF10178.9	gi|313117349|ref|YP_004044332.1|	-	0.11	12.6	0.8	0.42	10.8	0.0	2.3	3	0	0	3	3	3	0	Proteasome	assembly	chaperone	3
FAM176	PF14851.6	gi|313117349|ref|YP_004044332.1|	-	0.13	11.9	1.2	1.4	8.6	0.0	2.3	2	0	0	2	2	2	0	FAM176	family
Velvet	PF11754.8	gi|313117349|ref|YP_004044332.1|	-	3.7	7.4	15.2	9.2	6.1	15.2	1.6	1	1	0	1	1	1	0	Velvet	factor
PGF-CTERM	PF18204.1	gi|313117350|ref|YP_004044333.1|	-	1.2e-07	31.5	7.1	2.4e-07	30.5	7.1	1.5	1	0	0	1	1	1	1	PGF-CTERM	motif
MG2	PF01835.19	gi|313117350|ref|YP_004044333.1|	-	0.0013	19.2	2.5	1.9	9.0	0.2	4.3	5	0	0	5	5	5	2	MG2	domain
DUF4581	PF15167.6	gi|313117350|ref|YP_004044333.1|	-	0.029	14.5	0.2	0.12	12.5	0.2	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4581)
KH_1	PF00013.29	gi|313117350|ref|YP_004044333.1|	-	0.068	13.0	0.1	0.38	10.6	0.0	2.4	2	0	0	2	2	2	0	KH	domain
DUF4251	PF14059.6	gi|313117350|ref|YP_004044333.1|	-	1.7	8.6	10.3	1	9.3	0.8	4.8	5	1	1	6	6	6	0	Domain	of	unknown	function	(DUF4251)
CarboxypepD_reg	PF13620.6	gi|313117352|ref|YP_004044335.1|	-	1.4e-05	25.3	12.1	3e-05	24.2	1.2	4.1	3	1	1	4	4	4	1	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|313117352|ref|YP_004044335.1|	-	0.0012	18.8	1.6	0.031	14.3	0.1	2.8	2	0	0	2	2	2	1	CarboxypepD_reg-like	domain
FtsX	PF02687.21	gi|313117352|ref|YP_004044335.1|	-	0.0019	18.6	5.0	0.0019	18.6	5.0	5.1	5	2	1	6	6	6	1	FtsX-like	permease	family
PEGA	PF08308.11	gi|313117352|ref|YP_004044335.1|	-	0.013	15.3	6.2	0.051	13.5	0.5	3.9	4	0	0	4	4	4	0	PEGA	domain
Big_6	PF17936.1	gi|313117352|ref|YP_004044335.1|	-	0.025	14.8	0.1	0.21	11.9	0.1	2.6	1	0	0	1	1	1	0	Bacterial	Ig	domain
CARDB	PF07705.11	gi|313117352|ref|YP_004044335.1|	-	0.29	11.4	2.5	0.37	11.1	0.4	2.3	2	0	0	2	2	2	0	CARDB
ABC_tran	PF00005.27	gi|313117353|ref|YP_004044336.1|	-	5.1e-30	104.8	0.0	6.5e-30	104.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117353|ref|YP_004044336.1|	-	1.6e-06	28.1	0.7	0.0057	16.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|313117353|ref|YP_004044336.1|	-	4.3e-05	24.0	0.1	7.2e-05	23.2	0.1	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|313117353|ref|YP_004044336.1|	-	0.0035	17.0	0.2	0.0087	15.8	0.2	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
T2SSE	PF00437.20	gi|313117353|ref|YP_004044336.1|	-	0.02	13.9	0.1	0.035	13.2	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RsgA_GTPase	PF03193.16	gi|313117353|ref|YP_004044336.1|	-	0.02	14.8	0.1	0.045	13.7	0.1	1.5	1	0	0	1	1	1	0	RsgA	GTPase
SMC_N	PF02463.19	gi|313117353|ref|YP_004044336.1|	-	0.026	14.0	0.0	0.29	10.6	0.0	2.0	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|313117353|ref|YP_004044336.1|	-	0.029	14.6	0.1	0.29	11.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|313117353|ref|YP_004044336.1|	-	0.066	13.1	0.0	0.096	12.6	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|313117353|ref|YP_004044336.1|	-	0.071	13.6	0.0	0.11	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|313117353|ref|YP_004044336.1|	-	0.074	13.3	0.1	1.3	9.3	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.12	gi|313117353|ref|YP_004044336.1|	-	0.096	12.6	0.3	2.2	8.2	0.1	2.2	2	0	0	2	2	2	0	NACHT	domain
AAA_33	PF13671.6	gi|313117353|ref|YP_004044336.1|	-	0.19	11.9	0.2	0.33	11.1	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
YdjM	PF04307.14	gi|313117354|ref|YP_004044337.1|	-	1.4e-10	40.8	7.3	1.9e-10	40.3	7.3	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
UPF0242	PF06785.11	gi|313117354|ref|YP_004044337.1|	-	0.072	13.2	1.0	0.1	12.7	1.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Spore_YabQ	PF09578.10	gi|313117355|ref|YP_004044338.1|	-	0.034	14.4	0.6	0.034	14.4	0.6	3.4	4	0	0	4	4	4	0	Spore	cortex	protein	YabQ	(Spore_YabQ)
FtsX	PF02687.21	gi|313117356|ref|YP_004044339.1|	-	2.9e-11	43.7	13.0	2.1e-07	31.3	2.0	5.2	6	0	0	6	6	6	2	FtsX-like	permease	family
CarboxypepD_reg	PF13620.6	gi|313117356|ref|YP_004044339.1|	-	0.004	17.4	4.7	0.004	17.4	4.7	4.8	4	1	1	5	5	5	1	Carboxypeptidase	regulatory-like	domain
CopC	PF04234.12	gi|313117356|ref|YP_004044339.1|	-	0.42	11.7	2.6	0.93	10.6	0.3	2.7	2	1	0	2	2	2	0	CopC	domain
DUF5325	PF17259.2	gi|313117356|ref|YP_004044339.1|	-	4.2	7.3	7.1	2.2	8.2	1.0	3.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5325)
Glycos_transf_2	PF00535.26	gi|313117357|ref|YP_004044340.1|	-	2.2e-23	82.9	0.0	3.4e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|313117357|ref|YP_004044340.1|	-	0.002	18.0	0.0	0.0025	17.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
HATPase_c	PF02518.26	gi|313117358|ref|YP_004044341.1|	-	1.8e-14	54.2	0.0	3e-14	53.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|313117358|ref|YP_004044341.1|	-	8.8e-14	51.3	1.4	8.8e-14	51.3	1.4	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.24	gi|313117358|ref|YP_004044341.1|	-	1.7e-13	50.7	0.1	5.9e-13	49.0	0.0	2.0	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|313117358|ref|YP_004044341.1|	-	6.7e-12	45.6	0.3	6.8e-11	42.4	0.1	2.6	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|313117358|ref|YP_004044341.1|	-	5.3e-10	39.3	0.0	1.4e-09	37.9	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|313117358|ref|YP_004044341.1|	-	2.7e-06	27.6	0.0	9.3e-06	25.8	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
PAS_8	PF13188.7	gi|313117358|ref|YP_004044341.1|	-	1.1e-05	25.3	0.0	5.7e-05	23.0	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.12	gi|313117358|ref|YP_004044341.1|	-	0.00015	22.0	0.1	0.0055	17.0	0.0	2.9	1	1	1	2	2	2	1	PAS	fold
PAS_7	PF12860.7	gi|313117358|ref|YP_004044341.1|	-	0.00041	20.5	0.0	0.002	18.3	0.0	2.2	1	1	0	1	1	1	1	PAS	fold
VIT1	PF01988.19	gi|313117358|ref|YP_004044341.1|	-	0.018	14.9	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	VIT	family
DUF2524	PF10732.9	gi|313117358|ref|YP_004044341.1|	-	0.055	13.8	0.8	1.2	9.5	0.2	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2524)
NUDIX	PF00293.28	gi|313117359|ref|YP_004044342.1|	-	3.1e-11	43.4	0.0	3.9e-11	43.1	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
GDP_Man_Dehyd	PF16363.5	gi|313117360|ref|YP_004044343.1|	-	4.9e-81	272.7	0.0	5.5e-81	272.5	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|313117360|ref|YP_004044343.1|	-	7e-67	225.4	0.0	8.6e-67	225.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|313117360|ref|YP_004044343.1|	-	5.5e-24	84.7	0.0	7.3e-24	84.2	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|313117360|ref|YP_004044343.1|	-	4.2e-22	78.6	0.0	4.9e-22	78.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|313117360|ref|YP_004044343.1|	-	9.4e-21	74.2	0.0	1.7e-19	70.1	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|313117360|ref|YP_004044343.1|	-	2.3e-14	53.2	0.0	5e-13	48.8	0.0	2.4	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|313117360|ref|YP_004044343.1|	-	6.2e-12	45.8	0.0	9.7e-12	45.1	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|313117360|ref|YP_004044343.1|	-	3.1e-07	30.2	0.1	5e-07	29.5	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|313117360|ref|YP_004044343.1|	-	0.00077	19.0	0.0	0.071	12.6	0.0	2.6	3	0	0	3	3	3	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|313117360|ref|YP_004044343.1|	-	0.01	16.1	0.2	0.028	14.7	0.1	1.8	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
DapB_N	PF01113.20	gi|313117360|ref|YP_004044343.1|	-	0.09	12.9	0.6	1.6	8.9	0.2	2.3	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
KR	PF08659.10	gi|313117360|ref|YP_004044343.1|	-	0.16	11.9	0.0	0.47	10.4	0.0	1.8	1	1	0	1	1	1	0	KR	domain
RmlD_sub_bind	PF04321.17	gi|313117361|ref|YP_004044344.1|	-	5.2e-70	235.8	0.0	5.9e-70	235.6	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|313117361|ref|YP_004044344.1|	-	3.1e-25	89.0	0.0	4.3e-25	88.6	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|313117361|ref|YP_004044344.1|	-	3.7e-15	56.2	0.0	8e-15	55.1	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|313117361|ref|YP_004044344.1|	-	3.2e-07	29.8	0.2	1.1e-06	28.0	0.1	2.0	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|313117361|ref|YP_004044344.1|	-	2.4e-06	26.8	0.3	4.7e-06	25.8	0.3	1.4	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|313117361|ref|YP_004044344.1|	-	3.1e-06	26.6	0.0	6.3e-06	25.6	0.0	1.6	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|313117361|ref|YP_004044344.1|	-	0.004	17.1	0.0	0.0059	16.5	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
zf-ACC	PF17848.1	gi|313117362|ref|YP_004044345.1|	-	0.00017	21.6	0.9	0.00053	20.0	0.1	2.0	2	0	0	2	2	2	1	Acetyl-coA	carboxylase	zinc	finger	domain
DNA_ligase_ZBD	PF03119.16	gi|313117362|ref|YP_004044345.1|	-	0.011	15.8	2.9	0.02	14.9	2.9	1.5	1	1	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
OrfB_Zn_ribbon	PF07282.11	gi|313117362|ref|YP_004044345.1|	-	0.012	15.5	1.4	0.018	15.0	1.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|313117362|ref|YP_004044345.1|	-	0.027	13.9	0.8	0.054	12.9	0.1	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|313117362|ref|YP_004044345.1|	-	0.03	13.9	0.6	0.079	12.6	0.1	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|313117362|ref|YP_004044345.1|	-	0.033	13.7	0.1	0.033	13.7	0.1	2.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
IBR	PF01485.21	gi|313117362|ref|YP_004044345.1|	-	0.068	13.4	0.7	0.69	10.2	1.1	1.9	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
UPF0547	PF10571.9	gi|313117362|ref|YP_004044345.1|	-	0.079	13.0	3.3	0.14	12.3	0.2	2.6	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
NTP_transferase	PF00483.23	gi|313117363|ref|YP_004044346.1|	-	2.8e-55	187.6	0.0	3.4e-55	187.3	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|313117363|ref|YP_004044346.1|	-	4.4e-10	40.1	0.0	7.5e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|313117363|ref|YP_004044346.1|	-	3.8e-06	26.4	1.5	0.0074	16.0	0.1	3.4	2	1	1	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|313117363|ref|YP_004044346.1|	-	0.0081	15.9	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
dTDP_sugar_isom	PF00908.17	gi|313117364|ref|YP_004044347.1|	-	3.1e-17	62.8	0.0	4.1e-17	62.4	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.11	gi|313117364|ref|YP_004044347.1|	-	0.00014	21.6	0.0	0.00019	21.1	0.0	1.3	1	1	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.11	gi|313117364|ref|YP_004044347.1|	-	0.006	16.3	0.3	0.061	13.1	0.3	2.1	1	1	0	1	1	1	1	Cupin	domain
Polysacc_synt_C	PF14667.6	gi|313117365|ref|YP_004044348.1|	-	3e-26	92.2	13.5	3e-26	92.2	13.5	3.6	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|313117365|ref|YP_004044348.1|	-	1.2e-22	80.5	11.8	1.2e-22	80.5	11.8	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|313117365|ref|YP_004044348.1|	-	7.1e-21	74.8	36.5	9.7e-19	67.8	15.9	2.2	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|313117365|ref|YP_004044348.1|	-	9.4e-11	41.0	12.5	9.4e-11	41.0	12.5	2.0	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|313117365|ref|YP_004044348.1|	-	2.1e-10	40.5	6.7	2.1e-10	40.5	6.7	3.5	3	1	1	4	4	4	1	MatE
Sulfatase	PF00884.23	gi|313117367|ref|YP_004044350.1|	-	4.7e-18	65.6	0.0	6e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|313117367|ref|YP_004044350.1|	-	0.014	15.0	0.9	0.022	14.3	0.4	1.7	2	1	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|313117367|ref|YP_004044350.1|	-	0.12	11.0	0.0	0.18	10.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
Glycos_transf_2	PF00535.26	gi|313117368|ref|YP_004044351.1|	-	3.5e-18	66.0	0.0	4.8e-18	65.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|313117368|ref|YP_004044351.1|	-	3e-12	46.9	0.0	5.5e-12	46.1	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.6	gi|313117368|ref|YP_004044351.1|	-	0.00027	20.7	0.5	0.0018	18.0	0.1	2.4	2	1	0	2	2	2	1	Glycosyltransferase	like	family
Glyco_trans_1_4	PF13692.6	gi|313117369|ref|YP_004044352.1|	-	1.5e-12	48.1	0.0	2.7e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|313117369|ref|YP_004044352.1|	-	4.5e-06	27.0	0.0	9.8e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|313117369|ref|YP_004044352.1|	-	0.00062	19.3	0.0	0.0012	18.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|313117369|ref|YP_004044352.1|	-	0.0065	16.5	0.0	0.0096	15.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|313117370|ref|YP_004044353.1|	-	8.2e-27	93.8	0.0	1.3e-26	93.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|313117370|ref|YP_004044353.1|	-	6.7e-24	84.8	0.0	1.1e-23	84.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|313117370|ref|YP_004044353.1|	-	4.3e-12	46.4	1.5	1.2e-11	45.0	0.6	2.1	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|313117370|ref|YP_004044353.1|	-	5.3e-07	30.2	0.0	9.6e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|313117370|ref|YP_004044353.1|	-	0.0016	18.5	0.2	0.033	14.2	0.2	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|313117370|ref|YP_004044353.1|	-	0.038	14.4	0.0	0.11	12.9	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
Sulfatase	PF00884.23	gi|313117371|ref|YP_004044354.1|	-	8.6e-15	54.9	1.7	3.9e-13	49.5	1.7	2.2	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|313117371|ref|YP_004044354.1|	-	0.0043	16.7	5.6	0.033	13.8	5.6	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
acVLRF1	PF18859.1	gi|313117371|ref|YP_004044354.1|	-	0.0053	17.0	0.1	0.0094	16.2	0.1	1.3	1	0	0	1	1	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Glyco_transf_4	PF13439.6	gi|313117372|ref|YP_004044355.1|	-	9.1e-17	61.6	0.0	1.3e-16	61.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|313117372|ref|YP_004044355.1|	-	2.7e-14	53.1	0.1	1.3e-13	50.9	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|313117372|ref|YP_004044355.1|	-	9.2e-14	52.0	0.0	2.7e-13	50.5	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|313117372|ref|YP_004044355.1|	-	0.00014	22.3	0.0	0.00021	21.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|313117372|ref|YP_004044355.1|	-	0.0018	18.0	0.0	0.0031	17.2	0.0	1.4	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_4_2	PF13477.6	gi|313117372|ref|YP_004044355.1|	-	0.0044	17.0	0.2	0.082	12.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|313117372|ref|YP_004044355.1|	-	0.026	14.9	0.0	0.064	13.7	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|313117373|ref|YP_004044356.1|	-	1e-26	93.5	0.0	1.6e-26	92.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|313117373|ref|YP_004044356.1|	-	1.1e-23	84.1	0.0	2.8e-23	82.8	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|313117373|ref|YP_004044356.1|	-	2e-23	83.2	0.7	3.4e-23	82.5	0.7	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|313117373|ref|YP_004044356.1|	-	7.5e-18	65.5	1.8	7.5e-18	65.5	1.8	1.8	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
NTP_transferase	PF00483.23	gi|313117374|ref|YP_004044357.1|	-	9.2e-44	149.9	0.0	1e-43	149.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|313117374|ref|YP_004044357.1|	-	3.1e-14	53.6	0.0	3.8e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|313117374|ref|YP_004044357.1|	-	0.0003	20.6	0.0	0.0015	18.4	0.0	2.0	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
RecA	PF00154.21	gi|313117374|ref|YP_004044357.1|	-	0.21	11.0	0.0	0.32	10.4	0.0	1.2	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
PGF-CTERM	PF18204.1	gi|313117375|ref|YP_004044358.1|	-	0.0092	15.9	1.7	0.019	14.9	1.7	1.5	1	0	0	1	1	1	1	PGF-CTERM	motif
Peptidase_S8	PF00082.22	gi|313117376|ref|YP_004044359.1|	-	8.3e-43	146.7	7.1	8.3e-43	146.7	7.1	3.2	2	1	0	2	2	2	1	Subtilase	family
CarbopepD_reg_2	PF13715.6	gi|313117376|ref|YP_004044359.1|	-	4.9e-10	39.3	1.2	1.8e-09	37.5	0.3	2.6	2	0	0	2	2	2	1	CarboxypepD_reg-like	domain
Epimerase	PF01370.21	gi|313117377|ref|YP_004044360.1|	-	3.9e-44	150.9	0.1	4.8e-44	150.6	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|313117377|ref|YP_004044360.1|	-	4.4e-43	147.9	1.1	3e-42	145.2	1.1	2.1	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|313117377|ref|YP_004044360.1|	-	1.4e-13	50.6	0.1	1.8e-13	50.2	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|313117377|ref|YP_004044360.1|	-	6.3e-11	41.8	0.1	3.4e-10	39.4	0.1	2.0	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|313117377|ref|YP_004044360.1|	-	7.1e-10	38.5	0.2	6.3e-07	28.8	0.0	2.8	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|313117377|ref|YP_004044360.1|	-	6e-08	32.2	0.0	8.4e-06	25.1	0.1	2.6	2	1	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.13	gi|313117377|ref|YP_004044360.1|	-	0.14	11.7	0.1	5.7	6.4	0.0	2.4	2	1	0	2	2	2	0	NmrA-like	family
Response_reg	PF00072.24	gi|313117378|ref|YP_004044361.1|	-	4e-17	62.4	0.3	7.2e-17	61.6	0.3	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|313117378|ref|YP_004044361.1|	-	6.5e-17	61.6	6.3	1.3e-16	60.7	6.3	1.5	1	0	0	1	1	1	1	HalX	domain
TolA_bind_tri	PF16331.5	gi|313117378|ref|YP_004044361.1|	-	0.022	14.8	1.6	0.04	14.0	1.6	1.4	1	0	0	1	1	1	0	TolA	binding	protein	trimerisation
AIG1	PF04548.16	gi|313117378|ref|YP_004044361.1|	-	0.04	13.2	0.7	0.055	12.8	0.7	1.2	1	0	0	1	1	1	0	AIG1	family
Orbi_VP5	PF00901.17	gi|313117378|ref|YP_004044361.1|	-	0.067	11.6	0.2	0.086	11.2	0.2	1.2	1	0	0	1	1	1	0	Orbivirus	outer	capsid	protein	VP5
DAHP_snth_FXD	PF18152.1	gi|313117378|ref|YP_004044361.1|	-	0.088	12.7	0.1	5.9	6.8	0.0	2.7	3	0	0	3	3	3	0	DAHP	synthase	ferredoxin-like	domain
IF-2B	PF01008.17	gi|313117378|ref|YP_004044361.1|	-	0.11	11.7	0.5	0.46	9.6	0.0	1.8	2	0	0	2	2	2	0	Initiation	factor	2	subunit	family
ATG16	PF08614.11	gi|313117380|ref|YP_004044363.1|	-	6.1e-05	23.3	10.5	6.1e-05	23.3	10.5	2.8	2	1	0	2	2	2	1	Autophagy	protein	16	(ATG16)
DUF3584	PF12128.8	gi|313117380|ref|YP_004044363.1|	-	0.0025	15.4	8.6	0.0036	14.9	8.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Baculo_PEP_C	PF04513.12	gi|313117380|ref|YP_004044363.1|	-	0.0056	16.7	4.4	0.0056	16.7	4.4	2.2	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.12	gi|313117380|ref|YP_004044363.1|	-	0.012	15.7	11.0	0.28	11.2	0.8	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Seryl_tRNA_N	PF02403.22	gi|313117380|ref|YP_004044363.1|	-	0.024	14.9	4.2	0.024	14.9	4.2	2.5	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Apolipoprotein	PF01442.18	gi|313117380|ref|YP_004044363.1|	-	0.04	13.8	15.0	0.23	11.3	12.3	2.1	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
KELK	PF15796.5	gi|313117380|ref|YP_004044363.1|	-	0.041	14.3	0.2	0.041	14.3	0.2	3.0	2	1	0	2	2	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
Atg14	PF10186.9	gi|313117380|ref|YP_004044363.1|	-	0.044	12.9	7.2	0.12	11.4	7.3	1.6	1	1	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Exonuc_VII_L	PF02601.15	gi|313117380|ref|YP_004044363.1|	-	0.046	13.3	2.5	0.071	12.7	2.5	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ApoLp-III	PF07464.11	gi|313117380|ref|YP_004044363.1|	-	0.048	13.7	9.8	0.13	12.3	9.8	1.7	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
DUF724	PF05266.14	gi|313117380|ref|YP_004044363.1|	-	0.06	13.2	7.9	0.96	9.2	1.7	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
Spc7	PF08317.11	gi|313117380|ref|YP_004044363.1|	-	0.073	11.9	16.5	0.64	8.8	7.0	2.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Nup54	PF13874.6	gi|313117380|ref|YP_004044363.1|	-	0.079	13.1	10.6	0.033	14.3	1.3	2.7	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
Prefoldin_2	PF01920.20	gi|313117380|ref|YP_004044363.1|	-	0.1	12.6	15.2	4.7	7.2	0.8	4.0	2	1	0	3	3	3	0	Prefoldin	subunit
HAUS-augmin3	PF14932.6	gi|313117380|ref|YP_004044363.1|	-	0.11	12.0	13.4	0.017	14.7	7.1	2.0	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Tropomyosin	PF00261.20	gi|313117380|ref|YP_004044363.1|	-	0.18	11.2	13.4	0.025	14.0	6.1	2.4	1	1	1	2	2	2	0	Tropomyosin
Cep57_CLD_2	PF14197.6	gi|313117380|ref|YP_004044363.1|	-	0.23	11.6	13.2	3.1	7.9	0.7	3.2	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
CENP-F_leu_zip	PF10473.9	gi|313117380|ref|YP_004044363.1|	-	0.25	11.4	18.3	0.13	12.3	9.7	2.7	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF2353	PF09789.9	gi|313117380|ref|YP_004044363.1|	-	0.27	10.5	13.6	0.18	11.1	0.9	2.3	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Snapin_Pallidin	PF14712.6	gi|313117380|ref|YP_004044363.1|	-	0.28	11.6	13.4	0.16	12.4	3.6	3.0	1	1	2	3	3	3	0	Snapin/Pallidin
Prominin	PF05478.11	gi|313117380|ref|YP_004044363.1|	-	0.39	8.6	3.6	0.57	8.1	3.6	1.3	1	0	0	1	1	1	0	Prominin
Med28	PF11594.8	gi|313117380|ref|YP_004044363.1|	-	0.4	10.7	7.7	0.5	10.4	4.1	2.7	3	1	1	4	4	2	0	Mediator	complex	subunit	28
EzrA	PF06160.12	gi|313117380|ref|YP_004044363.1|	-	0.69	8.0	13.9	0.081	11.1	0.5	1.9	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
HSCB_C	PF07743.13	gi|313117380|ref|YP_004044363.1|	-	0.76	10.3	13.0	0.07	13.6	1.7	3.4	1	1	1	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
ABC_tran_CTD	PF16326.5	gi|313117380|ref|YP_004044363.1|	-	0.78	10.0	18.3	2.3	8.5	2.1	4.5	1	1	2	3	3	3	0	ABC	transporter	C-terminal	domain
MIF4G_like_2	PF09090.11	gi|313117380|ref|YP_004044363.1|	-	0.83	9.1	6.5	1.9	7.9	6.5	1.6	1	0	0	1	1	1	0	MIF4G	like
Fib_alpha	PF08702.10	gi|313117380|ref|YP_004044363.1|	-	0.87	9.8	9.0	0.63	10.2	5.5	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF4164	PF13747.6	gi|313117380|ref|YP_004044363.1|	-	0.9	9.9	13.4	0.22	11.8	6.5	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
GTP-bdg_M	PF16360.5	gi|313117380|ref|YP_004044363.1|	-	1.4	9.6	7.3	0.46	11.1	0.2	3.0	1	1	2	3	3	3	0	GTP-binding	GTPase	Middle	Region
NPV_P10	PF05531.12	gi|313117380|ref|YP_004044363.1|	-	1.8	9.1	15.3	47	4.5	0.3	3.7	2	1	2	4	4	3	0	Nucleopolyhedrovirus	P10	protein
CorA	PF01544.18	gi|313117380|ref|YP_004044363.1|	-	2.2	7.5	9.9	3.8	6.7	9.4	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
GAS	PF13851.6	gi|313117380|ref|YP_004044363.1|	-	2.3	7.5	10.8	92	2.3	11.1	2.3	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
CENP-H	PF05837.12	gi|313117380|ref|YP_004044363.1|	-	2.3	8.7	11.8	0.51	10.8	3.1	2.6	1	1	1	2	2	2	0	Centromere	protein	H	(CENP-H)
APG6_N	PF17675.1	gi|313117380|ref|YP_004044363.1|	-	2.3	8.7	20.7	0.34	11.4	3.0	3.3	1	1	1	2	2	2	0	Apg6	coiled-coil	region
PRKG1_interact	PF15898.5	gi|313117380|ref|YP_004044363.1|	-	2.5	9.0	16.2	2.9	8.9	6.6	3.0	2	1	1	3	3	2	0	cGMP-dependent	protein	kinase	interacting	domain
TMPIT	PF07851.13	gi|313117380|ref|YP_004044363.1|	-	2.9	7.1	5.8	0.68	9.1	1.7	1.8	1	1	1	2	2	2	0	TMPIT-like	protein
SPATA1_C	PF15743.5	gi|313117380|ref|YP_004044363.1|	-	3.4	7.7	8.3	0.29	11.2	0.2	2.6	2	1	0	2	2	2	0	Spermatogenesis-associated	C-terminus
YabA	PF06156.13	gi|313117380|ref|YP_004044363.1|	-	4.1	8.1	14.6	2.4	8.8	1.1	3.0	2	1	1	3	3	2	0	Initiation	control	protein	YabA
MscS_porin	PF12795.7	gi|313117380|ref|YP_004044363.1|	-	4.6	6.7	20.5	1.1	8.8	16.3	2.0	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Tropomyosin_1	PF12718.7	gi|313117380|ref|YP_004044363.1|	-	5	7.3	16.7	1.1e+02	2.9	16.8	2.8	1	1	0	1	1	1	0	Tropomyosin	like
FliT	PF05400.13	gi|313117380|ref|YP_004044363.1|	-	5.4	7.9	11.4	0.88	10.4	4.5	3.1	1	1	1	2	2	2	0	Flagellar	protein	FliT
Sec34	PF04136.15	gi|313117380|ref|YP_004044363.1|	-	5.5	6.8	10.0	3.4	7.6	3.0	2.7	2	1	1	3	3	2	0	Sec34-like	family
V_ATPase_I	PF01496.19	gi|313117380|ref|YP_004044363.1|	-	7.1	4.4	6.4	14	3.4	6.2	1.5	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
CCDC-167	PF15188.6	gi|313117380|ref|YP_004044363.1|	-	7.7	6.9	16.0	0.73	10.2	1.9	3.2	2	1	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
ACCA	PF03255.14	gi|313117380|ref|YP_004044363.1|	-	8.7	6.2	7.5	0.69	9.8	0.6	2.4	2	1	1	3	3	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
T2SSN	PF01203.19	gi|313117381|ref|YP_004044364.1|	-	6.7e-05	23.2	7.2	0.049	13.9	1.2	2.9	2	1	1	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	N
Sarcoglycan_1	PF04790.13	gi|313117381|ref|YP_004044364.1|	-	0.00047	19.6	13.7	0.33	10.3	0.6	4.4	1	1	1	3	3	3	3	Sarcoglycan	complex	subunit	protein
ASH	PF15780.5	gi|313117381|ref|YP_004044364.1|	-	0.087	13.0	1.4	0.31	11.3	0.1	2.6	2	0	0	2	2	2	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
DUF945	PF06097.11	gi|313117381|ref|YP_004044364.1|	-	0.098	11.7	3.3	0.22	10.6	3.3	1.7	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF945)
Poly_export	PF02563.16	gi|313117381|ref|YP_004044364.1|	-	0.13	12.5	1.4	1.6	9.0	0.2	3.1	1	1	1	2	2	2	0	Polysaccharide	biosynthesis/export	protein
DUF3971	PF13116.6	gi|313117381|ref|YP_004044364.1|	-	0.89	9.1	3.0	5.5	6.5	0.3	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function
Peptidase_S24	PF00717.23	gi|313117382|ref|YP_004044365.1|	-	9.5e-08	31.9	0.5	2.3e-07	30.6	0.0	1.9	2	0	0	2	2	2	1	Peptidase	S24-like
TrbC	PF04956.13	gi|313117382|ref|YP_004044365.1|	-	6.2	7.1	23.3	0.093	13.0	4.0	3.6	4	0	0	4	4	4	0	TrbC/VIRB2	family
DUF3446	PF11928.8	gi|313117383|ref|YP_004044366.1|	-	0.04	14.2	0.8	0.057	13.7	0.1	1.7	2	0	0	2	2	2	0	Early	growth	response	N-terminal	domain
DUF4232	PF14016.6	gi|313117383|ref|YP_004044366.1|	-	0.11	12.6	9.9	0.52	10.5	3.3	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4232)
Cadherin-like	PF12733.7	gi|313117383|ref|YP_004044366.1|	-	3	8.4	7.3	0.65	10.6	2.4	2.3	1	1	2	3	3	3	0	Cadherin-like	beta	sandwich	domain
HlyIII	PF03006.20	gi|313117386|ref|YP_004044369.1|	-	0.032	13.9	0.4	0.047	13.4	0.4	1.2	1	0	0	1	1	1	0	Haemolysin-III	related
DUF5305	PF17231.2	gi|313117387|ref|YP_004044370.1|	-	1.6e-46	158.5	0.2	7.6e-45	153.0	0.0	2.2	2	0	0	2	2	2	2	Family	of	unknown	function	(DUF5305)
T2SSM	PF04612.12	gi|313117387|ref|YP_004044370.1|	-	0.053	13.6	0.2	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
DUF4131	PF13567.6	gi|313117387|ref|YP_004044370.1|	-	0.12	12.1	0.7	0.3	10.7	0.4	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
OppC_N	PF12911.7	gi|313117388|ref|YP_004044371.1|	-	0.22	11.6	0.8	1.2	9.2	0.0	2.3	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
FtsA	PF14450.6	gi|313117389|ref|YP_004044372.1|	-	0.0016	18.9	0.0	0.005	17.2	0.0	1.8	2	0	0	2	2	2	1	Cell	division	protein	FtsA
NPR3	PF03666.13	gi|313117389|ref|YP_004044372.1|	-	5.9	5.6	8.0	8	5.1	8.0	1.2	1	0	0	1	1	1	0	Nitrogen	Permease	regulator	of	amino	acid	transport	activity	3
zf-FPG_IleRS	PF06827.14	gi|313117390|ref|YP_004044373.1|	-	0.00068	19.4	2.5	0.0015	18.3	2.5	1.6	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
zf-TFIIB	PF13453.6	gi|313117390|ref|YP_004044373.1|	-	0.00079	18.7	1.5	0.0015	17.8	1.5	1.5	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
Lar_restr_allev	PF14354.6	gi|313117390|ref|YP_004044373.1|	-	0.016	15.6	0.5	0.023	15.0	0.5	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.7	gi|313117390|ref|YP_004044373.1|	-	0.026	14.5	0.8	0.042	13.8	0.8	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-RING_6	PF14835.6	gi|313117390|ref|YP_004044373.1|	-	0.059	13.2	0.1	0.075	12.9	0.1	1.3	1	0	0	1	1	1	0	zf-RING	of	BARD1-type	protein
HTH_10	PF04967.12	gi|313117391|ref|YP_004044374.1|	-	1.4e-22	79.2	0.0	6.1e-22	77.2	0.0	2.2	2	0	0	2	2	2	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|313117391|ref|YP_004044374.1|	-	3.2e-19	69.3	3.8	3.2e-19	69.3	3.8	2.9	4	0	0	4	4	4	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|313117391|ref|YP_004044374.1|	-	7.9e-13	48.9	3.5	3.2e-08	34.0	0.2	2.7	2	0	0	2	2	2	2	GAF	domain
GAF_3	PF13492.6	gi|313117391|ref|YP_004044374.1|	-	2.3e-08	34.4	0.7	0.0089	16.4	0.1	2.6	2	0	0	2	2	2	2	GAF	domain
HTH_1	PF00126.27	gi|313117391|ref|YP_004044374.1|	-	6.3e-05	22.8	0.0	0.00027	20.8	0.0	2.2	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GAF	PF01590.26	gi|313117391|ref|YP_004044374.1|	-	0.00012	22.8	0.2	0.00048	20.8	0.1	2.1	2	0	0	2	2	2	1	GAF	domain
Sigma70_r4	PF04545.16	gi|313117391|ref|YP_004044374.1|	-	0.00039	19.9	0.0	0.0012	18.3	0.0	1.9	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.19	gi|313117391|ref|YP_004044374.1|	-	0.0017	17.9	0.0	0.13	11.8	0.0	3.1	2	1	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|313117391|ref|YP_004044374.1|	-	0.0053	16.6	0.0	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|313117391|ref|YP_004044374.1|	-	0.033	13.7	0.0	0.083	12.5	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF5119	PF17145.4	gi|313117391|ref|YP_004044374.1|	-	0.039	13.9	0.0	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5119)
MSC	PF09402.10	gi|313117391|ref|YP_004044374.1|	-	0.17	11.3	0.2	0.27	10.6	0.2	1.3	1	0	0	1	1	1	0	Man1-Src1p-C-terminal	domain
HalOD1	PF18545.1	gi|313117392|ref|YP_004044375.1|	-	9e-18	64.3	0.0	1.1e-17	64.1	0.0	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Seryl_tRNA_N	PF02403.22	gi|313117393|ref|YP_004044376.1|	-	2e-06	28.0	63.0	0.00029	21.0	6.1	5.6	2	2	4	6	6	6	4	Seryl-tRNA	synthetase	N-terminal	domain
AAA_23	PF13476.6	gi|313117393|ref|YP_004044376.1|	-	3.8e-06	27.6	24.8	3.8e-06	27.6	24.8	4.8	1	1	1	3	3	2	1	AAA	domain
DUF4407	PF14362.6	gi|313117393|ref|YP_004044376.1|	-	4.1e-05	23.1	56.1	0.0059	16.0	24.4	3.2	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4407)
Spc7	PF08317.11	gi|313117393|ref|YP_004044376.1|	-	6.3e-05	22.0	80.2	0.0098	14.8	27.0	4.1	2	2	2	4	4	4	3	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|313117393|ref|YP_004044376.1|	-	0.00012	22.2	44.8	0.025	14.6	4.4	6.0	3	2	3	6	6	6	3	Protein	of	unknown	function	(DUF1664)
ERM	PF00769.19	gi|313117393|ref|YP_004044376.1|	-	0.00014	21.8	77.9	0.0069	16.2	30.1	2.4	1	1	1	2	2	2	2	Ezrin/radixin/moesin	family
GAS	PF13851.6	gi|313117393|ref|YP_004044376.1|	-	0.0016	17.9	71.0	0.0035	16.7	11.6	4.1	2	2	2	4	4	4	3	Growth-arrest	specific	micro-tubule	binding
HemX	PF04375.14	gi|313117393|ref|YP_004044376.1|	-	0.0038	16.6	11.7	0.0038	16.6	11.7	4.3	2	2	2	4	4	4	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
ATG16	PF08614.11	gi|313117393|ref|YP_004044376.1|	-	0.0059	16.9	87.3	0.038	14.2	27.6	5.2	2	2	2	4	4	4	2	Autophagy	protein	16	(ATG16)
UPF0242	PF06785.11	gi|313117393|ref|YP_004044376.1|	-	0.0094	16.1	14.2	0.0094	16.1	14.2	4.9	2	2	2	4	4	4	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
Atg14	PF10186.9	gi|313117393|ref|YP_004044376.1|	-	0.027	13.6	64.3	0.22	10.6	4.0	4.2	1	1	3	4	4	4	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Snapin_Pallidin	PF14712.6	gi|313117393|ref|YP_004044376.1|	-	0.077	13.4	55.8	0.038	14.4	5.8	6.2	2	2	4	6	6	6	0	Snapin/Pallidin
DHR10	PF18595.1	gi|313117393|ref|YP_004044376.1|	-	0.095	12.8	92.2	1	9.4	21.2	5.4	2	2	3	5	5	5	0	Designed	helical	repeat	protein	10	domain
HSBP1	PF06825.12	gi|313117393|ref|YP_004044376.1|	-	0.15	11.9	0.2	0.15	11.9	0.2	5.7	6	1	0	6	6	5	0	Heat	shock	factor	binding	protein	1
DUF4201	PF13870.6	gi|313117393|ref|YP_004044376.1|	-	0.22	11.3	63.3	2.1	8.1	13.8	4.9	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4201)
Laminin_II	PF06009.12	gi|313117393|ref|YP_004044376.1|	-	0.35	10.9	46.0	0.19	11.8	2.5	4.9	2	2	3	5	5	5	0	Laminin	Domain	II
APG6_N	PF17675.1	gi|313117393|ref|YP_004044376.1|	-	1	9.9	98.0	0.22	12.1	41.3	5.6	1	1	4	5	5	5	0	Apg6	coiled-coil	region
DUF948	PF06103.11	gi|313117393|ref|YP_004044376.1|	-	1.2	9.4	27.3	1.5	9.1	1.9	5.5	3	1	1	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
MAP65_ASE1	PF03999.12	gi|313117393|ref|YP_004044376.1|	-	1.4	7.5	52.6	0.037	12.7	12.9	2.6	2	1	0	2	2	2	0	Microtubule	associated	protein	(MAP65/ASE1	family)
TPR_MLP1_2	PF07926.12	gi|313117393|ref|YP_004044376.1|	-	2.1	8.4	82.3	0.99	9.5	7.0	5.1	2	2	2	4	4	4	0	TPR/MLP1/MLP2-like	protein
MAD	PF05557.13	gi|313117393|ref|YP_004044376.1|	-	2.5	6.3	68.0	1.8	6.8	21.3	2.4	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
IMPa_helical	PF18642.1	gi|313117393|ref|YP_004044376.1|	-	3.4	8.1	8.6	24	5.4	0.1	4.4	4	1	1	5	5	4	0	Immunomodulating	metalloprotease	helical	domain
BLOC1_2	PF10046.9	gi|313117393|ref|YP_004044376.1|	-	4.3	7.7	52.4	0.96	9.8	4.1	6.3	2	2	3	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF3584	PF12128.8	gi|313117393|ref|YP_004044376.1|	-	4.6	4.6	72.1	0.51	7.8	24.2	2.6	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3584)
NPV_P10	PF05531.12	gi|313117393|ref|YP_004044376.1|	-	5	7.7	37.7	3.6	8.1	1.3	6.6	2	2	2	4	4	4	0	Nucleopolyhedrovirus	P10	protein
Golgin_A5	PF09787.9	gi|313117393|ref|YP_004044376.1|	-	5.4	6.4	84.0	1.6	8.2	30.1	3.7	1	1	3	4	4	4	0	Golgin	subfamily	A	member	5
AAA_15	PF13175.6	gi|313117393|ref|YP_004044376.1|	-	7.4	6.2	37.5	15	5.1	19.5	3.2	1	1	1	2	2	2	0	AAA	ATPase	domain
CENP-F_leu_zip	PF10473.9	gi|313117393|ref|YP_004044376.1|	-	8.9	6.3	88.1	0.21	11.6	10.7	4.6	2	2	2	4	4	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
CALCOCO1	PF07888.11	gi|313117393|ref|YP_004044376.1|	-	9.6	4.9	74.7	5.3	5.8	21.8	2.2	2	0	0	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
HalX	PF08663.10	gi|313117396|ref|YP_004044379.1|	-	4.7e-12	46.1	13.2	1.3e-11	44.6	12.8	1.9	1	1	0	1	1	1	1	HalX	domain
Erp_C	PF06780.11	gi|313117396|ref|YP_004044379.1|	-	0.0012	18.8	0.8	0.0015	18.6	0.8	1.1	1	0	0	1	1	1	1	Erp	protein	C-terminus
SPAM	PF02090.15	gi|313117396|ref|YP_004044379.1|	-	0.0032	17.3	3.4	0.0046	16.8	3.4	1.3	1	0	0	1	1	1	1	Salmonella	surface	presentation	of	antigen	gene	type	M	protein
ADSL_C	PF10397.9	gi|313117396|ref|YP_004044379.1|	-	0.46	11.1	4.6	0.28	11.8	1.7	1.9	1	1	1	2	2	2	0	Adenylosuccinate	lyase	C-terminus
Atg14	PF10186.9	gi|313117396|ref|YP_004044379.1|	-	0.75	8.8	7.8	0.8	8.7	7.8	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Response_reg	PF00072.24	gi|313117397|ref|YP_004044380.1|	-	1.6e-13	50.8	0.2	2e-13	50.5	0.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|313117399|ref|YP_004044382.1|	-	9.9e-23	80.5	0.5	1.5e-12	47.7	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|313117399|ref|YP_004044382.1|	-	4.1e-19	69.1	0.0	7.6e-19	68.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|313117399|ref|YP_004044382.1|	-	3.7e-11	43.2	0.0	0.00041	20.6	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|313117399|ref|YP_004044382.1|	-	1.3e-10	41.2	0.0	2.3e-08	34.0	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|313117399|ref|YP_004044382.1|	-	4.7e-07	29.8	0.7	4.7e-07	29.8	0.7	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|313117399|ref|YP_004044382.1|	-	6.1e-07	29.4	0.1	1.6e-06	28.1	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SPOB_a	PF14689.6	gi|313117399|ref|YP_004044382.1|	-	3.3e-06	26.7	1.1	7.6e-06	25.6	1.1	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HATPase_c_5	PF14501.6	gi|313117399|ref|YP_004044382.1|	-	5.6e-06	26.2	0.0	1.3e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HisKA_4TM	PF16926.5	gi|313117399|ref|YP_004044382.1|	-	2e-05	24.2	0.0	4.2e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
PAS_10	PF13596.6	gi|313117399|ref|YP_004044382.1|	-	0.0004	20.9	0.0	0.67	10.6	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_3	PF08447.12	gi|313117399|ref|YP_004044382.1|	-	0.007	16.6	0.1	1.1	9.6	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
dCache_1	PF02743.18	gi|313117399|ref|YP_004044382.1|	-	0.02	14.7	0.2	0.21	11.3	0.0	2.2	2	0	0	2	2	2	0	Cache	domain
YojJ	PF10372.9	gi|313117399|ref|YP_004044382.1|	-	0.024	14.7	1.4	0.84	9.8	0.1	3.1	2	1	1	3	3	3	0	Bacterial	membrane-spanning	protein	N-terminus
PAS_8	PF13188.7	gi|313117399|ref|YP_004044382.1|	-	0.11	12.6	0.0	0.49	10.5	0.0	2.1	2	0	0	2	2	1	0	PAS	domain
AIF-MLS	PF14962.6	gi|313117399|ref|YP_004044382.1|	-	0.25	11.3	4.6	0.075	13.0	1.6	1.6	2	0	0	2	2	2	0	Mitochondria	Localisation	Sequence
p450	PF00067.22	gi|313117400|ref|YP_004044383.1|	-	7.3e-91	305.2	0.0	8.3e-91	305.0	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
Pr_beta_C	PF12465.8	gi|313117400|ref|YP_004044383.1|	-	0.083	12.3	0.0	0.16	11.4	0.0	1.5	1	0	0	1	1	1	0	Proteasome	beta	subunits	C	terminal
HTH_10	PF04967.12	gi|313117401|ref|YP_004044384.1|	-	1.1e-18	66.8	0.0	2.1e-18	65.9	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|313117401|ref|YP_004044384.1|	-	0.0063	16.2	0.1	0.35	10.6	0.1	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|313117401|ref|YP_004044384.1|	-	0.015	15.1	0.1	0.067	13.0	0.0	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|313117401|ref|YP_004044384.1|	-	0.028	13.9	0.1	0.14	11.7	0.0	2.1	2	1	0	2	2	2	0	Sigma-70,	region	4
HTH_20	PF12840.7	gi|313117401|ref|YP_004044384.1|	-	0.034	14.2	0.0	0.092	12.8	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|313117401|ref|YP_004044384.1|	-	0.063	12.8	0.1	1.1	8.9	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.6	gi|313117401|ref|YP_004044384.1|	-	0.089	12.6	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
SpoIIID	PF12116.8	gi|313117401|ref|YP_004044384.1|	-	0.11	12.6	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
ZnuA	PF01297.17	gi|313117402|ref|YP_004044385.1|	-	1.4e-41	142.6	0.1	1.7e-41	142.3	0.1	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
ABC_tran	PF00005.27	gi|313117403|ref|YP_004044386.1|	-	4.8e-31	108.1	0.0	6.5e-31	107.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117403|ref|YP_004044386.1|	-	1e-11	45.3	0.5	6e-05	23.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|313117403|ref|YP_004044386.1|	-	2.9e-05	23.6	0.4	0.001	18.6	0.4	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|313117403|ref|YP_004044386.1|	-	8e-05	22.3	0.1	0.00017	21.3	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|313117403|ref|YP_004044386.1|	-	0.00067	20.0	0.3	0.0092	16.3	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|313117403|ref|YP_004044386.1|	-	0.0011	18.8	0.0	0.0019	18.0	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|313117403|ref|YP_004044386.1|	-	0.0015	18.3	0.0	0.003	17.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|313117403|ref|YP_004044386.1|	-	0.0015	17.4	0.4	0.39	9.4	0.1	3.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|313117403|ref|YP_004044386.1|	-	0.005	17.2	0.0	0.0085	16.5	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|313117403|ref|YP_004044386.1|	-	0.021	15.3	0.0	0.032	14.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|313117403|ref|YP_004044386.1|	-	0.027	14.4	0.1	0.16	11.9	0.1	2.0	1	1	0	1	1	1	0	NTPase
SbcCD_C	PF13558.6	gi|313117403|ref|YP_004044386.1|	-	0.049	13.9	0.3	0.89	9.8	0.3	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MeaB	PF03308.16	gi|313117403|ref|YP_004044386.1|	-	0.062	12.3	0.0	0.085	11.8	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Spore_IV_A	PF09547.10	gi|313117403|ref|YP_004044386.1|	-	0.072	12.0	0.0	0.11	11.5	0.0	1.2	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
MMR_HSR1	PF01926.23	gi|313117403|ref|YP_004044386.1|	-	0.075	13.1	0.1	0.21	11.7	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_33	PF13671.6	gi|313117403|ref|YP_004044386.1|	-	0.083	13.0	0.1	0.14	12.3	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|313117403|ref|YP_004044386.1|	-	0.085	12.9	0.2	0.22	11.6	0.1	1.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
RsgA_GTPase	PF03193.16	gi|313117403|ref|YP_004044386.1|	-	0.089	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
Septin	PF00735.18	gi|313117403|ref|YP_004044386.1|	-	0.15	11.3	0.0	13	5.0	0.0	2.1	2	0	0	2	2	2	0	Septin
AAA_27	PF13514.6	gi|313117403|ref|YP_004044386.1|	-	0.16	11.5	0.0	0.29	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|313117403|ref|YP_004044386.1|	-	0.2	10.7	0.0	0.3	10.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
ABC-3	PF00950.17	gi|313117404|ref|YP_004044387.1|	-	1e-55	189.1	40.6	1.2e-55	188.9	40.6	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|313117404|ref|YP_004044387.1|	-	0.00033	19.8	36.9	0.00033	19.8	36.9	1.8	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.6	gi|313117404|ref|YP_004044387.1|	-	0.11	12.7	1.0	0.28	11.4	1.0	1.6	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
Fe_dep_repr_C	PF02742.15	gi|313117405|ref|YP_004044388.1|	-	1.6e-20	73.0	0.3	3.2e-20	72.0	0.3	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|313117405|ref|YP_004044388.1|	-	9e-17	61.0	0.0	1.8e-16	60.1	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|313117405|ref|YP_004044388.1|	-	1.3e-11	44.3	0.3	2.8e-10	40.0	0.2	2.5	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|313117405|ref|YP_004044388.1|	-	1.5e-10	40.8	0.3	9.3e-09	35.1	0.0	2.8	3	0	0	3	3	2	1	MarR	family
FeoA	PF04023.14	gi|313117405|ref|YP_004044388.1|	-	7.5e-09	35.7	0.1	1.8e-08	34.5	0.1	1.7	1	0	0	1	1	1	1	FeoA	domain
MarR	PF01047.22	gi|313117405|ref|YP_004044388.1|	-	1.3e-08	34.7	0.3	5.4e-08	32.6	0.1	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|313117405|ref|YP_004044388.1|	-	4e-08	32.7	0.1	8.6e-08	31.6	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|313117405|ref|YP_004044388.1|	-	9.8e-08	31.7	6.2	3e-07	30.1	0.1	3.3	4	0	0	4	4	3	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|313117405|ref|YP_004044388.1|	-	7.4e-07	29.1	0.0	5e-05	23.3	0.1	2.8	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|313117405|ref|YP_004044388.1|	-	4.4e-06	27.1	0.6	1.2e-05	25.7	0.1	1.9	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
Crp	PF00325.20	gi|313117405|ref|YP_004044388.1|	-	8.2e-06	25.4	0.4	1.8e-05	24.3	0.1	1.7	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	crp	family
HTH_11	PF08279.12	gi|313117405|ref|YP_004044388.1|	-	1.3e-05	25.1	0.2	2.2e-05	24.3	0.2	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|313117405|ref|YP_004044388.1|	-	1.6e-05	24.7	0.3	8.4e-05	22.4	0.0	2.3	3	0	0	3	3	2	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.16	gi|313117405|ref|YP_004044388.1|	-	5.6e-05	22.6	0.2	0.23	11.0	0.0	2.8	3	0	0	3	3	2	2	Sigma-70,	region	4
Rrf2	PF02082.20	gi|313117405|ref|YP_004044388.1|	-	7.5e-05	23.0	0.0	0.00042	20.6	0.0	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|313117405|ref|YP_004044388.1|	-	0.00021	21.0	0.0	0.00082	19.1	0.0	2.0	2	1	0	2	2	1	1	Homeodomain-like	domain
GntR	PF00392.21	gi|313117405|ref|YP_004044388.1|	-	0.00041	19.9	0.1	0.00079	19.0	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_CodY	PF08222.11	gi|313117405|ref|YP_004044388.1|	-	0.00076	19.0	0.3	0.0018	17.8	0.2	1.7	2	0	0	2	2	1	1	CodY	helix-turn-helix	domain
HTH_5	PF01022.20	gi|313117405|ref|YP_004044388.1|	-	0.00093	19.0	0.0	0.003	17.4	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|313117405|ref|YP_004044388.1|	-	0.0011	18.7	0.1	0.0032	17.3	0.1	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|313117405|ref|YP_004044388.1|	-	0.0036	17.3	0.1	0.0086	16.1	0.1	1.6	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
HTH_36	PF13730.6	gi|313117405|ref|YP_004044388.1|	-	0.0036	17.2	0.0	0.0058	16.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|313117405|ref|YP_004044388.1|	-	0.01	15.8	0.1	0.018	15.1	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
FeoC	PF09012.10	gi|313117405|ref|YP_004044388.1|	-	0.01	15.9	0.0	0.025	14.6	0.0	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
FaeA	PF04703.12	gi|313117405|ref|YP_004044388.1|	-	0.015	15.6	0.0	0.031	14.7	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
Sigma70_r3	PF04539.16	gi|313117405|ref|YP_004044388.1|	-	0.017	15.2	0.5	0.062	13.4	0.1	2.1	2	0	0	2	2	2	0	Sigma-70	region	3
LacI	PF00356.21	gi|313117405|ref|YP_004044388.1|	-	0.028	14.2	0.5	0.086	12.6	0.2	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
DUF4423	PF14394.6	gi|313117405|ref|YP_004044388.1|	-	0.028	14.1	0.0	0.042	13.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TFIIE_alpha	PF02002.17	gi|313117405|ref|YP_004044388.1|	-	0.03	14.2	0.0	0.055	13.3	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
LexA_DNA_bind	PF01726.16	gi|313117405|ref|YP_004044388.1|	-	0.041	13.6	0.0	0.17	11.7	0.0	2.1	2	0	0	2	2	1	0	LexA	DNA	binding	domain
TetR_N	PF00440.23	gi|313117405|ref|YP_004044388.1|	-	0.045	13.5	0.3	0.51	10.2	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
DUF2250	PF10007.9	gi|313117405|ref|YP_004044388.1|	-	0.066	13.3	0.0	0.15	12.2	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_3	PF01381.22	gi|313117405|ref|YP_004044388.1|	-	0.081	13.0	0.0	0.71	10.0	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix
HTH_38	PF13936.6	gi|313117405|ref|YP_004044388.1|	-	0.11	12.3	0.1	0.35	10.7	0.1	2.0	1	0	0	1	1	1	0	Helix-turn-helix	domain
TBPIP	PF07106.13	gi|313117405|ref|YP_004044388.1|	-	0.11	12.5	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
Sigma70_r4_2	PF08281.12	gi|313117405|ref|YP_004044388.1|	-	0.11	12.2	0.0	0.49	10.1	0.0	2.2	1	0	0	1	1	1	0	Sigma-70,	region	4
YdaS_antitoxin	PF15943.5	gi|313117405|ref|YP_004044388.1|	-	0.12	12.3	0.0	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
EAP30	PF04157.16	gi|313117405|ref|YP_004044388.1|	-	0.14	11.4	0.0	0.26	10.5	0.0	1.4	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_1	PF00126.27	gi|313117405|ref|YP_004044388.1|	-	0.15	12.0	0.3	0.87	9.6	0.0	2.5	3	1	0	3	3	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Phage_terminase	PF10668.9	gi|313117405|ref|YP_004044388.1|	-	0.18	11.8	0.0	0.73	9.9	0.0	1.8	2	0	0	2	2	2	0	Phage	terminase	small	subunit
SgrR_N	PF12793.7	gi|313117405|ref|YP_004044388.1|	-	0.22	11.7	0.1	0.72	10.1	0.0	1.8	2	0	0	2	2	2	0	Sugar	transport-related	sRNA	regulator	N-term
PgpA	PF04608.13	gi|313117406|ref|YP_004044389.1|	-	3.3e-29	101.7	1.6	3.8e-29	101.6	1.6	1.0	1	0	0	1	1	1	1	Phosphatidylglycerophosphatase	A
ABC_tran	PF00005.27	gi|313117407|ref|YP_004044390.1|	-	7.6e-31	107.5	0.0	1.4e-30	106.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117407|ref|YP_004044390.1|	-	3.1e-07	30.5	0.1	0.012	15.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|313117407|ref|YP_004044390.1|	-	3.6e-06	27.4	0.3	5.5e-05	23.6	0.2	2.5	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.23	gi|313117407|ref|YP_004044390.1|	-	0.0011	19.1	0.0	0.0024	18.0	0.0	1.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|313117407|ref|YP_004044390.1|	-	0.0011	19.3	0.2	0.0045	17.4	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|313117407|ref|YP_004044390.1|	-	0.0013	18.7	1.2	0.031	14.3	0.1	2.3	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|313117407|ref|YP_004044390.1|	-	0.0051	17.1	0.3	0.016	15.5	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|313117407|ref|YP_004044390.1|	-	0.0055	16.6	0.0	0.01	15.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|313117407|ref|YP_004044390.1|	-	0.019	15.4	0.0	0.043	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|313117407|ref|YP_004044390.1|	-	0.02	14.7	0.0	0.041	13.6	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|313117407|ref|YP_004044390.1|	-	0.02	15.1	0.3	0.075	13.2	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|313117407|ref|YP_004044390.1|	-	0.022	14.5	0.0	0.048	13.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|313117407|ref|YP_004044390.1|	-	0.025	14.5	0.0	0.052	13.5	0.0	1.5	1	0	0	1	1	1	0	Rad17	P-loop	domain
NB-ARC	PF00931.22	gi|313117407|ref|YP_004044390.1|	-	0.026	13.7	0.0	0.043	13.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_28	PF13521.6	gi|313117407|ref|YP_004044390.1|	-	0.032	14.5	0.6	0.16	12.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|313117407|ref|YP_004044390.1|	-	0.033	13.0	0.1	0.08	11.7	0.0	1.5	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_24	PF13479.6	gi|313117407|ref|YP_004044390.1|	-	0.037	13.8	0.3	1.2	8.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|313117407|ref|YP_004044390.1|	-	0.063	13.5	0.1	0.26	11.5	0.1	1.9	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.6	gi|313117407|ref|YP_004044390.1|	-	0.063	12.8	0.2	0.23	11.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.19	gi|313117407|ref|YP_004044390.1|	-	0.072	12.5	0.0	5.8	6.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
TsaE	PF02367.17	gi|313117407|ref|YP_004044390.1|	-	0.073	13.1	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|313117407|ref|YP_004044390.1|	-	0.081	12.8	0.1	0.18	11.7	0.0	1.6	2	0	0	2	2	1	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|313117407|ref|YP_004044390.1|	-	0.099	12.0	0.0	0.22	10.9	0.0	1.5	2	0	0	2	2	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|313117407|ref|YP_004044390.1|	-	0.12	12.1	0.0	0.35	10.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|313117407|ref|YP_004044390.1|	-	0.15	11.9	0.0	0.35	10.8	0.0	1.5	2	0	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|313117407|ref|YP_004044390.1|	-	0.16	12.5	0.7	0.33	11.5	0.3	1.7	2	0	0	2	2	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|313117407|ref|YP_004044390.1|	-	0.17	11.6	0.0	0.36	10.6	0.0	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_14	PF13173.6	gi|313117407|ref|YP_004044390.1|	-	0.18	11.8	0.5	2.4	8.2	0.1	2.6	2	2	1	3	3	3	0	AAA	domain
AAA_7	PF12775.7	gi|313117407|ref|YP_004044390.1|	-	0.2	11.1	0.0	0.33	10.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
BPD_transp_1	PF00528.22	gi|313117408|ref|YP_004044391.1|	-	5.9e-16	58.7	11.0	1.1e-15	57.8	11.0	1.6	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
NMT1_2	PF13379.6	gi|313117409|ref|YP_004044392.1|	-	1.1e-47	162.8	0.7	2e-47	162.0	0.2	1.5	2	0	0	2	2	2	1	NMT1-like	family
Phosphonate-bd	PF12974.7	gi|313117409|ref|YP_004044392.1|	-	0.0095	15.5	0.2	0.02	14.5	0.1	1.6	2	0	0	2	2	2	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
DS	PF01916.17	gi|313117410|ref|YP_004044393.1|	-	2.1e-100	335.7	0.0	2.4e-100	335.5	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
ABC_tran	PF00005.27	gi|313117411|ref|YP_004044394.1|	-	1.4e-29	103.3	0.0	3.2e-29	102.2	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|313117411|ref|YP_004044394.1|	-	1.3e-10	41.6	6.6	2.8e-07	30.7	0.2	2.6	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|313117411|ref|YP_004044394.1|	-	2.6e-07	31.2	1.0	7.1e-07	29.9	1.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|313117411|ref|YP_004044394.1|	-	0.00024	21.6	0.2	0.00091	19.6	0.0	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|313117411|ref|YP_004044394.1|	-	0.016	14.9	0.3	0.045	13.5	0.3	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|313117411|ref|YP_004044394.1|	-	0.017	15.4	0.6	0.15	12.3	0.6	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|313117411|ref|YP_004044394.1|	-	0.02	15.4	1.5	0.039	14.5	1.5	1.8	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|313117411|ref|YP_004044394.1|	-	0.026	14.9	0.1	0.081	13.4	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|313117411|ref|YP_004044394.1|	-	0.035	13.8	0.1	0.08	12.7	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|313117411|ref|YP_004044394.1|	-	0.05	13.5	0.0	0.15	12.0	0.0	1.8	1	0	0	1	1	1	0	NTPase
AAA_19	PF13245.6	gi|313117411|ref|YP_004044394.1|	-	0.054	13.8	0.1	0.086	13.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|313117411|ref|YP_004044394.1|	-	0.072	12.8	0.0	0.17	11.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MukB	PF04310.12	gi|313117411|ref|YP_004044394.1|	-	0.08	12.7	0.1	0.22	11.3	0.1	1.7	2	0	0	2	2	2	0	MukB	N-terminal
SRP54	PF00448.22	gi|313117411|ref|YP_004044394.1|	-	0.097	12.3	0.1	0.19	11.3	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
SMC_N	PF02463.19	gi|313117411|ref|YP_004044394.1|	-	0.13	11.7	0.8	0.56	9.6	0.8	2.0	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
Radical_SAM	PF04055.21	gi|313117411|ref|YP_004044394.1|	-	1	9.7	3.4	2.1	8.7	3.2	1.7	1	1	0	1	1	1	0	Radical	SAM	superfamily
ABC2_membrane_3	PF12698.7	gi|313117412|ref|YP_004044395.1|	-	0.00064	18.9	27.3	0.0021	17.2	27.3	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|313117412|ref|YP_004044395.1|	-	0.27	10.5	21.0	0.58	9.4	17.3	2.5	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
PIG-F	PF06699.11	gi|313117412|ref|YP_004044395.1|	-	0.45	10.7	10.3	0.51	10.5	9.3	1.6	1	1	0	1	1	1	0	GPI	biosynthesis	protein	family	Pig-F
PAS_3	PF08447.12	gi|313117413|ref|YP_004044396.1|	-	9.2e-33	112.4	1.6	7.1e-18	64.7	0.2	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|313117413|ref|YP_004044396.1|	-	6.7e-17	61.7	0.2	7.6e-08	32.5	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|313117413|ref|YP_004044396.1|	-	1.1e-16	61.3	0.1	2.4e-16	60.2	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|313117413|ref|YP_004044396.1|	-	6.9e-15	54.8	2.2	2.7e-14	52.9	0.1	3.0	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|313117413|ref|YP_004044396.1|	-	1.5e-13	51.0	5.2	1.2e-05	25.6	0.3	3.7	3	0	0	3	3	3	2	PAS	fold
GAF_2	PF13185.6	gi|313117413|ref|YP_004044396.1|	-	1.4e-08	35.2	0.8	1.5e-07	31.8	0.2	2.7	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.25	gi|313117413|ref|YP_004044396.1|	-	7e-06	26.0	3.3	0.007	16.3	0.1	3.3	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|313117413|ref|YP_004044396.1|	-	6.1e-05	22.9	0.4	0.016	15.3	0.0	3.2	3	0	0	3	3	3	1	PAS	domain
HATPase_c_3	PF13589.6	gi|313117413|ref|YP_004044396.1|	-	0.0033	17.3	0.0	0.0095	15.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|313117413|ref|YP_004044396.1|	-	0.005	17.2	0.0	0.01	16.1	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
ZapB	PF06005.12	gi|313117413|ref|YP_004044396.1|	-	0.0057	17.1	6.0	0.19	12.2	0.0	3.9	4	0	0	4	4	4	1	Cell	division	protein	ZapB
PAS_7	PF12860.7	gi|313117413|ref|YP_004044396.1|	-	0.0088	16.2	0.2	0.13	12.5	0.0	2.8	2	0	0	2	2	2	1	PAS	fold
Retrotrans_gag	PF03732.17	gi|313117413|ref|YP_004044396.1|	-	0.0095	16.2	1.1	0.85	9.9	0.1	2.9	3	0	0	3	3	3	1	Retrotransposon	gag	protein
HATPase_c_2	PF13581.6	gi|313117413|ref|YP_004044396.1|	-	0.013	15.5	0.0	0.034	14.1	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
CCB2_CCB4	PF11152.8	gi|313117413|ref|YP_004044396.1|	-	0.016	14.5	0.0	0.055	12.8	0.0	1.9	2	0	0	2	2	2	0	Cofactor	assembly	of	complex	C	subunit	B,	CCB2/CCB4
SPOB_a	PF14689.6	gi|313117413|ref|YP_004044396.1|	-	0.055	13.2	0.0	0.16	11.7	0.0	1.8	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA_4TM	PF16926.5	gi|313117413|ref|YP_004044396.1|	-	0.062	12.9	0.0	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|313117414|ref|YP_004044397.1|	-	8.2e-30	103.3	6.0	4.8e-14	52.5	0.2	4.0	3	1	0	3	3	3	3	PAS	fold
Response_reg	PF00072.24	gi|313117414|ref|YP_004044397.1|	-	7e-15	55.2	0.2	1.5e-14	54.1	0.2	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|313117414|ref|YP_004044397.1|	-	2.6e-14	53.2	0.5	6.3e-06	26.2	0.0	3.7	2	1	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|313117414|ref|YP_004044397.1|	-	8.9e-12	45.2	0.0	1e-05	25.7	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|313117414|ref|YP_004044397.1|	-	3.6e-11	42.8	0.2	0.0027	17.7	0.0	4.1	2	1	1	3	3	3	3	PAS	domain
GAF_2	PF13185.6	gi|313117414|ref|YP_004044397.1|	-	1.6e-10	41.4	0.8	3.8e-10	40.2	0.2	2.0	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|313117414|ref|YP_004044397.1|	-	1.2e-07	32.1	0.0	4.1e-07	30.4	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
OKR_DC_1_N	PF03709.15	gi|313117414|ref|YP_004044397.1|	-	0.00014	22.1	0.3	0.001	19.3	0.3	2.4	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_7	PF12860.7	gi|313117414|ref|YP_004044397.1|	-	0.15	12.2	0.5	2.7	8.2	0.0	3.2	3	2	0	3	3	3	0	PAS	fold
Spore_YhcN_YlaJ	PF09580.10	gi|313117414|ref|YP_004044397.1|	-	0.23	11.5	3.6	0.22	11.6	1.3	2.0	2	0	0	2	2	2	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
ABC2_membrane_2	PF12679.7	gi|313117415|ref|YP_004044398.1|	-	0.072	12.4	0.0	0.072	12.4	0.0	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
BAT	PF15915.5	gi|313117416|ref|YP_004044399.1|	-	9e-36	123.1	0.0	9e-36	123.1	0.0	2.9	3	1	1	4	4	4	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|313117416|ref|YP_004044399.1|	-	9.6e-31	106.9	0.7	6.6e-20	71.8	0.0	2.8	2	0	0	2	2	2	2	GAF	domain
GAF	PF01590.26	gi|313117416|ref|YP_004044399.1|	-	8.8e-25	87.9	0.1	3.9e-13	50.2	0.1	3.0	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.12	gi|313117416|ref|YP_004044399.1|	-	3.1e-21	74.9	0.0	1.1e-20	73.1	0.0	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|313117416|ref|YP_004044399.1|	-	5e-21	75.0	1.3	1.1e-09	38.5	0.4	3.0	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|313117416|ref|YP_004044399.1|	-	4.9e-20	71.6	0.1	9.6e-11	41.7	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|313117416|ref|YP_004044399.1|	-	3.8e-19	68.9	0.0	1.1e-10	41.7	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|313117416|ref|YP_004044399.1|	-	1.1e-13	51.6	0.0	1.6e-05	25.3	0.0	2.5	2	0	0	2	2	2	2	GAF	domain
PAS_3	PF08447.12	gi|313117416|ref|YP_004044399.1|	-	1.1e-10	41.7	0.0	4.7e-08	33.2	0.0	2.9	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|313117416|ref|YP_004044399.1|	-	2.9e-09	36.7	0.1	1.7e-05	24.7	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
PAS_7	PF12860.7	gi|313117416|ref|YP_004044399.1|	-	6.8e-05	23.0	4.1	0.05	13.8	0.0	3.4	4	0	0	4	4	3	2	PAS	fold
Sigma70_r4	PF04545.16	gi|313117416|ref|YP_004044399.1|	-	0.00027	20.4	0.8	0.014	14.9	0.0	3.2	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|313117416|ref|YP_004044399.1|	-	0.00046	20.2	0.4	0.03	14.4	0.2	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|313117416|ref|YP_004044399.1|	-	0.014	15.0	0.0	1.4	8.7	0.0	2.6	2	0	0	2	2	2	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|313117416|ref|YP_004044399.1|	-	0.015	15.2	3.7	1.7	8.6	0.2	3.4	3	1	0	3	3	3	0	MarR	family
HTH_24	PF13412.6	gi|313117416|ref|YP_004044399.1|	-	0.021	14.4	0.0	0.21	11.2	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|313117416|ref|YP_004044399.1|	-	0.028	14.3	0.0	0.14	12.1	0.0	2.2	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|313117416|ref|YP_004044399.1|	-	0.037	13.8	0.4	0.41	10.5	0.2	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_1	PF00126.27	gi|313117416|ref|YP_004044399.1|	-	0.08	12.9	0.0	0.81	9.7	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_22	PF13309.6	gi|313117416|ref|YP_004044399.1|	-	0.14	12.3	0.0	1.1	9.4	0.0	2.6	2	0	0	2	2	2	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|313117416|ref|YP_004044399.1|	-	1.2	9.2	4.7	4.3	7.4	0.1	3.2	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
CPSF100_C	PF13299.6	gi|313117417|ref|YP_004044400.1|	-	0.081	13.1	1.5	0.11	12.6	1.5	1.2	1	0	0	1	1	1	0	Cleavage	and	polyadenylation	factor	2	C-terminal
AAA_31	PF13614.6	gi|313117418|ref|YP_004044401.1|	-	6.8e-20	71.7	0.0	9.9e-20	71.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|313117418|ref|YP_004044401.1|	-	9e-10	38.7	0.0	9.5e-10	38.6	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|313117418|ref|YP_004044401.1|	-	5.5e-07	29.1	0.0	8.7e-07	28.4	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
ParA	PF10609.9	gi|313117418|ref|YP_004044401.1|	-	4.3e-05	23.1	0.0	0.00012	21.6	0.0	1.7	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|313117418|ref|YP_004044401.1|	-	0.00024	20.5	0.0	0.016	14.5	0.0	2.2	1	1	0	2	2	2	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|313117418|ref|YP_004044401.1|	-	0.0035	16.8	0.0	0.0053	16.2	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|313117418|ref|YP_004044401.1|	-	0.011	15.2	0.0	0.022	14.2	0.0	1.4	1	1	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|313117418|ref|YP_004044401.1|	-	0.019	14.6	0.0	0.041	13.5	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
CLP1_P	PF16575.5	gi|313117418|ref|YP_004044401.1|	-	0.21	11.3	0.0	0.42	10.4	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HD	PF01966.22	gi|313117420|ref|YP_004044403.1|	-	1e-10	41.9	0.8	1.7e-10	41.2	0.8	1.3	1	0	0	1	1	1	1	HD	domain
Tetraspanin	PF00335.20	gi|313117421|ref|YP_004044404.1|	-	4.3	7.0	7.6	4.9	6.8	7.6	1.1	1	0	0	1	1	1	0	Tetraspanin	family
NMT1_2	PF13379.6	gi|313117422|ref|YP_004044405.1|	-	4.2e-21	75.8	0.0	5.1e-21	75.5	0.0	1.1	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|313117422|ref|YP_004044405.1|	-	0.00025	21.1	0.0	0.00048	20.1	0.0	1.4	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|313117422|ref|YP_004044405.1|	-	0.00093	18.9	0.0	0.0013	18.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
BPD_transp_1	PF00528.22	gi|313117423|ref|YP_004044406.1|	-	4.4e-21	75.5	7.6	5.6e-21	75.1	7.6	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|313117424|ref|YP_004044407.1|	-	6.3e-32	111.0	0.0	9.4e-32	110.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|313117424|ref|YP_004044407.1|	-	8.3e-06	25.8	0.0	0.1	12.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|313117424|ref|YP_004044407.1|	-	0.00063	20.2	0.0	0.0045	17.4	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|313117424|ref|YP_004044407.1|	-	0.00066	20.1	0.4	0.00088	19.7	0.4	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|313117424|ref|YP_004044407.1|	-	0.0018	18.6	0.2	0.0035	17.6	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|313117424|ref|YP_004044407.1|	-	0.0022	17.9	0.1	0.0037	17.2	0.1	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_33	PF13671.6	gi|313117424|ref|YP_004044407.1|	-	0.0059	16.8	0.0	0.011	15.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|313117424|ref|YP_004044407.1|	-	0.017	15.4	0.4	0.53	10.5	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|313117424|ref|YP_004044407.1|	-	0.022	14.5	0.2	0.25	11.1	0.1	2.0	1	1	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|313117424|ref|YP_004044407.1|	-	0.043	14.0	0.0	0.12	12.7	0.0	1.7	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.6	gi|313117424|ref|YP_004044407.1|	-	0.05	13.2	0.1	0.44	10.1	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|313117424|ref|YP_004044407.1|	-	0.055	13.2	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|313117424|ref|YP_004044407.1|	-	0.071	12.5	0.1	3.8	6.9	0.1	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|313117424|ref|YP_004044407.1|	-	0.077	12.9	0.1	0.13	12.2	0.1	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
NB-ARC	PF00931.22	gi|313117424|ref|YP_004044407.1|	-	0.081	12.1	0.2	0.14	11.3	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.6	gi|313117424|ref|YP_004044407.1|	-	0.11	13.0	0.5	0.18	12.3	0.5	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|313117424|ref|YP_004044407.1|	-	0.11	12.4	0.1	0.21	11.5	0.1	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AMP-binding	PF00501.28	gi|313117425|ref|YP_004044408.1|	-	4.3e-90	302.3	0.0	5.5e-90	302.0	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|313117425|ref|YP_004044408.1|	-	1.3e-20	74.2	0.7	2.8e-20	73.0	0.7	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Aconitase	PF00330.20	gi|313117426|ref|YP_004044409.1|	-	1e-170	568.7	0.0	1.4e-170	568.3	0.0	1.2	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|313117426|ref|YP_004044409.1|	-	8.3e-42	142.6	0.0	1.4e-41	141.9	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
BAT	PF15915.5	gi|313117426|ref|YP_004044409.1|	-	0.0018	18.2	7.1	0.002	18.0	0.3	3.4	4	0	0	4	4	4	1	GAF	and	HTH_10	associated	domain
RACo_linker	PF17650.1	gi|313117428|ref|YP_004044411.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	RACo	linker	region
PAS_4	PF08448.10	gi|313117429|ref|YP_004044412.1|	-	1.3e-38	131.6	8.6	2.3e-15	56.8	0.3	5.0	4	1	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|313117429|ref|YP_004044412.1|	-	3.3e-35	120.5	2.9	1e-16	60.9	0.1	3.8	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|313117429|ref|YP_004044412.1|	-	1.3e-27	96.0	0.3	1.3e-13	51.1	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
GAF_2	PF13185.6	gi|313117429|ref|YP_004044412.1|	-	3.6e-24	85.6	2.1	6.4e-12	45.9	0.1	4.8	4	1	1	5	5	5	2	GAF	domain
PAS_8	PF13188.7	gi|313117429|ref|YP_004044412.1|	-	2.2e-18	65.8	0.1	9.1e-07	28.8	0.0	4.0	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|313117429|ref|YP_004044412.1|	-	1.5e-16	60.9	0.4	3.8e-16	59.6	0.4	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|313117429|ref|YP_004044412.1|	-	1.1e-15	58.1	0.0	1.5e-07	31.8	0.0	4.3	4	1	1	5	5	5	2	GAF	domain
GAF	PF01590.26	gi|313117429|ref|YP_004044412.1|	-	2e-15	57.6	0.0	3.6e-07	30.9	0.0	3.9	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.24	gi|313117429|ref|YP_004044412.1|	-	8.2e-13	48.5	0.3	8.2e-13	48.5	0.3	3.0	3	0	0	3	3	3	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|313117429|ref|YP_004044412.1|	-	4.2e-12	45.9	0.2	4.2e-12	45.9	0.2	3.6	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|313117429|ref|YP_004044412.1|	-	1.1e-05	25.6	0.1	0.00073	19.8	0.0	2.8	2	0	0	2	2	2	1	PAS	fold
OKR_DC_1_N	PF03709.15	gi|313117429|ref|YP_004044412.1|	-	0.001	19.3	0.6	0.0049	17.1	0.5	2.3	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_7	PF12860.7	gi|313117429|ref|YP_004044412.1|	-	0.0077	16.4	1.3	0.5	10.5	0.0	4.2	5	1	0	5	5	5	1	PAS	fold
PAS_12	PF18095.1	gi|313117429|ref|YP_004044412.1|	-	0.0092	15.6	0.0	0.059	13.0	0.0	2.3	3	0	0	3	3	3	1	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|313117429|ref|YP_004044412.1|	-	0.025	14.4	0.0	0.066	13.0	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.6	gi|313117429|ref|YP_004044412.1|	-	0.1	13.2	0.0	0.81	10.3	0.0	2.7	3	0	0	3	3	1	0	PAS	domain
GIT1_C	PF12205.8	gi|313117429|ref|YP_004044412.1|	-	0.56	10.3	3.2	19	5.4	0.1	3.5	4	0	0	4	4	3	0	G	protein-coupled	receptor	kinase-interacting	protein	1	C	term
Na_H_antiporter	PF03553.14	gi|313117430|ref|YP_004044413.1|	-	2.3e-64	217.5	24.6	3.4e-64	217.0	5.6	2.3	1	1	1	2	2	2	2	Na+/H+	antiporter	family
SseC	PF04888.12	gi|313117430|ref|YP_004044413.1|	-	0.038	13.6	0.2	0.038	13.6	0.2	2.1	2	0	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
DUF4516	PF14990.6	gi|313117430|ref|YP_004044413.1|	-	0.49	10.2	3.0	1.7	8.4	0.1	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4516)
TAT_signal	PF10518.9	gi|313117431|ref|YP_004044414.1|	-	0.012	15.4	0.1	0.015	15.1	0.1	1.1	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SDA1	PF05285.12	gi|313117431|ref|YP_004044414.1|	-	0.12	11.7	4.2	0.12	11.8	4.2	1.0	1	0	0	1	1	1	0	SDA1
Nop14	PF04147.12	gi|313117431|ref|YP_004044414.1|	-	0.16	10.2	5.1	0.16	10.2	5.1	1.0	1	0	0	1	1	1	0	Nop14-like	family
Trypan_PARP	PF05887.11	gi|313117431|ref|YP_004044414.1|	-	0.98	9.4	8.2	1.2	9.1	8.2	1.1	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
DNA_pol_phi	PF04931.13	gi|313117431|ref|YP_004044414.1|	-	1.8	6.6	13.8	2	6.4	13.8	1.0	1	0	0	1	1	1	0	DNA	polymerase	phi
DUF4637	PF15470.6	gi|313117431|ref|YP_004044414.1|	-	5.9	6.6	9.2	7.2	6.3	9.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4637)
DUF2457	PF10446.9	gi|313117431|ref|YP_004044414.1|	-	6.1	5.9	12.5	6.8	5.7	12.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
CDC45	PF02724.14	gi|313117431|ref|YP_004044414.1|	-	9.2	4.4	6.9	10	4.3	6.9	1.0	1	0	0	1	1	1	0	CDC45-like	protein
adh_short_C2	PF13561.6	gi|313117432|ref|YP_004044415.1|	-	1.7e-36	126.0	2.5	2.5e-36	125.4	2.5	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|313117432|ref|YP_004044415.1|	-	6.1e-32	110.7	1.5	7.4e-32	110.4	1.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|313117432|ref|YP_004044415.1|	-	0.00011	22.2	2.0	0.00024	21.1	2.0	1.6	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|313117432|ref|YP_004044415.1|	-	0.0011	18.5	0.6	0.0015	18.0	0.2	1.4	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|313117432|ref|YP_004044415.1|	-	0.003	17.0	0.2	0.004	16.6	0.2	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
MCR_alpha	PF02249.17	gi|313117432|ref|YP_004044415.1|	-	0.06	13.8	0.3	0.19	12.2	0.3	1.8	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	alpha	subunit,	C-terminal	domain
RmlD_sub_bind	PF04321.17	gi|313117432|ref|YP_004044415.1|	-	0.55	9.3	2.3	0.76	8.8	2.3	1.1	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Patatin	PF01734.22	gi|313117433|ref|YP_004044416.1|	-	1.6e-15	57.9	2.5	3e-14	53.7	2.5	2.2	1	1	0	1	1	1	1	Patatin-like	phospholipase
Pyr_redox_2	PF07992.14	gi|313117434|ref|YP_004044417.1|	-	1.8e-53	181.7	4.2	3.1e-53	180.9	4.2	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|313117434|ref|YP_004044417.1|	-	1.5e-28	99.2	1.0	3.1e-28	98.2	1.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|313117434|ref|YP_004044417.1|	-	2.6e-15	56.7	5.5	1.6e-14	54.2	0.2	3.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|313117434|ref|YP_004044417.1|	-	2.9e-12	46.5	1.3	1.2e-11	44.4	1.3	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|313117434|ref|YP_004044417.1|	-	5.4e-07	29.1	0.0	0.00032	20.0	0.0	2.4	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|313117434|ref|YP_004044417.1|	-	3.5e-06	26.4	5.4	1.1e-05	24.7	4.2	2.3	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|313117434|ref|YP_004044417.1|	-	5.1e-05	22.8	1.1	8.5e-05	22.1	0.2	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|313117434|ref|YP_004044417.1|	-	0.065	11.9	0.8	11	4.6	0.3	3.1	3	0	0	3	3	3	0	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|313117434|ref|YP_004044417.1|	-	0.12	11.4	8.8	0.35	9.9	8.8	2.2	1	1	0	1	1	1	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|313117434|ref|YP_004044417.1|	-	0.15	11.9	1.3	14	5.6	0.1	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|313117434|ref|YP_004044417.1|	-	1.6	9.0	5.0	13	6.1	0.2	3.2	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
MarR_2	PF12802.7	gi|313117435|ref|YP_004044418.1|	-	3.9e-10	39.5	0.0	1.3e-09	37.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|313117435|ref|YP_004044418.1|	-	2.1e-08	33.8	0.0	8.8e-08	31.8	0.0	2.0	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|313117435|ref|YP_004044418.1|	-	7.8e-07	28.9	0.0	1.3e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|313117435|ref|YP_004044418.1|	-	3.1e-06	27.1	0.0	6.4e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|313117435|ref|YP_004044418.1|	-	5.1e-06	26.3	0.0	1.5e-05	24.8	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|313117435|ref|YP_004044418.1|	-	1.3e-05	24.7	0.0	2.6e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|313117435|ref|YP_004044418.1|	-	5.5e-05	23.6	0.1	0.0013	19.1	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Dimerisation2	PF16864.5	gi|313117435|ref|YP_004044418.1|	-	0.00012	21.9	0.0	0.0002	21.3	0.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain
HTH_5	PF01022.20	gi|313117435|ref|YP_004044418.1|	-	0.00014	21.7	0.0	0.00022	21.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|313117435|ref|YP_004044418.1|	-	0.00031	20.6	0.0	0.00059	19.8	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|313117435|ref|YP_004044418.1|	-	0.0061	16.5	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|313117435|ref|YP_004044418.1|	-	0.045	14.1	0.0	0.12	12.8	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|313117435|ref|YP_004044418.1|	-	0.062	13.5	0.0	0.28	11.4	0.0	1.9	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_29	PF13551.6	gi|313117435|ref|YP_004044418.1|	-	0.067	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
AbiEi_4	PF13338.6	gi|313117435|ref|YP_004044418.1|	-	0.1	12.8	0.0	0.26	11.5	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
Desulfoferrod_N	PF06397.12	gi|313117435|ref|YP_004044418.1|	-	0.12	12.1	0.1	0.2	11.3	0.1	1.3	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
TFIIE_alpha	PF02002.17	gi|313117435|ref|YP_004044418.1|	-	0.16	11.8	0.0	0.38	10.7	0.0	1.6	1	1	1	2	2	2	0	TFIIE	alpha	subunit
GntR	PF00392.21	gi|313117435|ref|YP_004044418.1|	-	0.18	11.5	0.0	0.4	10.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TetR_C_6	PF13977.6	gi|313117436|ref|YP_004044419.1|	-	1.8e-14	53.9	0.5	2.6e-14	53.4	0.5	1.3	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|313117436|ref|YP_004044419.1|	-	1.3e-06	28.1	0.0	2.3e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|313117436|ref|YP_004044419.1|	-	6.6e-06	26.3	0.2	1.1e-05	25.5	0.2	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|313117436|ref|YP_004044419.1|	-	0.00011	22.2	0.0	0.00028	20.9	0.0	1.7	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|313117436|ref|YP_004044419.1|	-	0.00018	21.8	0.0	0.00031	21.0	0.0	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|313117436|ref|YP_004044419.1|	-	0.00048	20.1	0.3	0.00088	19.3	0.3	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|313117436|ref|YP_004044419.1|	-	0.023	15.0	0.5	0.032	14.5	0.5	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MatE	PF01554.18	gi|313117437|ref|YP_004044420.1|	-	4.5e-64	214.9	48.1	3e-36	124.5	12.8	3.0	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|313117437|ref|YP_004044420.1|	-	2.7e-06	27.5	32.8	3.7e-05	23.8	16.4	5.6	3	2	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
TRAP-gamma	PF07074.12	gi|313117437|ref|YP_004044420.1|	-	0.1	12.1	0.1	0.1	12.1	0.1	2.8	3	0	0	3	3	3	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
MurJ	PF03023.14	gi|313117437|ref|YP_004044420.1|	-	1.1	7.8	37.3	5.1	5.6	35.6	3.1	1	1	0	1	1	1	0	Lipid	II	flippase	MurJ
NAD_binding_10	PF13460.6	gi|313117438|ref|YP_004044421.1|	-	1.7e-13	50.8	0.0	6.1e-13	49.1	0.0	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|313117438|ref|YP_004044421.1|	-	1.5e-12	47.6	0.0	2.1e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|313117438|ref|YP_004044421.1|	-	0.00065	19.2	0.0	0.0034	16.9	0.0	2.1	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_4	PF07993.12	gi|313117438|ref|YP_004044421.1|	-	0.0028	16.9	0.0	0.0048	16.1	0.0	1.4	1	0	0	1	1	1	1	Male	sterility	protein
HTH_23	PF13384.6	gi|313117438|ref|YP_004044421.1|	-	0.024	14.4	0.0	0.058	13.2	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
GerE	PF00196.19	gi|313117438|ref|YP_004044421.1|	-	0.081	12.5	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
RmlD_sub_bind	PF04321.17	gi|313117438|ref|YP_004044421.1|	-	0.083	12.0	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|313117438|ref|YP_004044421.1|	-	0.11	11.5	0.0	0.26	10.3	0.0	1.6	1	1	1	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
adh_short	PF00106.25	gi|313117438|ref|YP_004044421.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Usp	PF00582.26	gi|313117439|ref|YP_004044422.1|	-	7.8e-29	101.0	0.8	8.7e-29	100.8	0.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
ASCH	PF04266.14	gi|313117440|ref|YP_004044423.1|	-	0.016	15.8	0.1	0.026	15.1	0.1	1.3	1	0	0	1	1	1	0	ASCH	domain
Peptidase_S8	PF00082.22	gi|313117441|ref|YP_004044424.1|	-	1.6e-48	165.5	8.8	1.6e-48	165.5	8.8	1.6	2	0	0	2	2	2	1	Subtilase	family
DUF4225	PF13988.6	gi|313117441|ref|YP_004044424.1|	-	0.0057	16.2	0.1	0.012	15.2	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4225)
Inhibitor_I9	PF05922.16	gi|313117441|ref|YP_004044424.1|	-	0.0095	16.6	0.1	0.021	15.5	0.1	1.6	1	0	0	1	1	1	1	Peptidase	inhibitor	I9
CHRD	PF07452.12	gi|313117441|ref|YP_004044424.1|	-	0.024	15.6	0.3	0.088	13.8	0.3	2.0	1	0	0	1	1	1	0	CHRD	domain
fn3	PF00041.21	gi|313117441|ref|YP_004044424.1|	-	0.082	13.3	0.0	0.25	11.7	0.0	1.9	1	0	0	1	1	1	0	Fibronectin	type	III	domain
YHS	PF04945.13	gi|313117442|ref|YP_004044425.1|	-	6.6e-06	26.1	0.7	1.4e-05	25.0	0.4	1.7	2	0	0	2	2	2	1	YHS	domain
DUF2116	PF09889.9	gi|313117442|ref|YP_004044425.1|	-	0.0069	16.3	0.4	0.59	10.2	0.1	2.1	2	0	0	2	2	2	2	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-FCS	PF06467.14	gi|313117442|ref|YP_004044425.1|	-	0.032	14.2	4.3	0.12	12.3	4.3	1.9	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
SR1P	PF13790.6	gi|313117442|ref|YP_004044425.1|	-	0.081	13.1	0.5	8.9	6.5	0.1	2.1	2	0	0	2	2	2	0	SR1	protein
zf-FLZ	PF04570.14	gi|313117442|ref|YP_004044425.1|	-	0.16	11.5	6.4	0.52	9.8	6.4	1.9	1	1	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
BAT	PF15915.5	gi|313117443|ref|YP_004044426.1|	-	5.4e-41	140.1	1.8	5.4e-41	140.1	1.8	2.5	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|313117443|ref|YP_004044426.1|	-	6.6e-33	113.9	0.5	2.4e-14	53.8	0.0	3.3	3	0	0	3	3	3	3	GAF	domain
HTH_10	PF04967.12	gi|313117443|ref|YP_004044426.1|	-	3.6e-21	74.7	0.0	1.7e-20	72.6	0.0	2.2	2	0	0	2	2	2	1	HTH	DNA	binding	domain
Response_reg	PF00072.24	gi|313117443|ref|YP_004044426.1|	-	1.5e-12	47.7	0.4	5.4e-12	45.9	0.1	2.2	2	0	0	2	2	2	1	Response	regulator	receiver	domain
GAF_3	PF13492.6	gi|313117443|ref|YP_004044426.1|	-	1e-09	38.8	0.0	0.0028	18.0	0.0	3.8	3	0	0	3	3	3	2	GAF	domain
GAF	PF01590.26	gi|313117443|ref|YP_004044426.1|	-	7.1e-09	36.4	0.4	0.0021	18.7	0.0	4.0	5	0	0	5	5	5	2	GAF	domain
Sigma70_r4	PF04545.16	gi|313117443|ref|YP_004044426.1|	-	0.0095	15.4	0.5	0.037	13.6	0.2	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|313117443|ref|YP_004044426.1|	-	0.01	15.4	0.0	0.022	14.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
SatD	PF16264.5	gi|313117443|ref|YP_004044426.1|	-	0.012	15.2	0.0	0.058	13.0	0.0	2.0	2	0	0	2	2	2	0	SatD	family	(SatD)
FleQ	PF06490.11	gi|313117443|ref|YP_004044426.1|	-	0.018	15.4	0.1	0.35	11.2	0.0	3.1	3	0	0	3	3	3	0	Flagellar	regulatory	protein	FleQ
SH3_14	PF18343.1	gi|313117444|ref|YP_004044427.1|	-	0.12	12.5	0.0	1.3	9.1	0.0	2.1	2	0	0	2	2	2	0	Dda	helicase	SH3	domain
HTH_20	PF12840.7	gi|313117445|ref|YP_004044428.1|	-	7.9e-12	45.1	0.1	1.7e-11	44.0	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|313117445|ref|YP_004044428.1|	-	3.3e-08	33.3	0.0	4.5e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|313117445|ref|YP_004044428.1|	-	3.9e-08	33.1	0.0	5.9e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|313117445|ref|YP_004044428.1|	-	2.3e-07	30.6	0.0	3.7e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|313117445|ref|YP_004044428.1|	-	7.9e-07	28.9	0.1	1.2e-06	28.3	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|313117445|ref|YP_004044428.1|	-	5.6e-05	23.2	0.0	8.2e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_24	PF13412.6	gi|313117445|ref|YP_004044428.1|	-	0.0004	19.9	0.0	0.00058	19.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|313117445|ref|YP_004044428.1|	-	0.00068	19.4	0.0	0.0012	18.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|313117445|ref|YP_004044428.1|	-	0.0011	18.9	0.0	0.0015	18.4	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|313117445|ref|YP_004044428.1|	-	0.0016	18.9	0.2	0.0027	18.2	0.2	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|313117445|ref|YP_004044428.1|	-	0.0023	17.9	1.1	0.012	15.6	0.2	2.0	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
HxlR	PF01638.17	gi|313117445|ref|YP_004044428.1|	-	0.0038	17.0	0.0	0.0048	16.7	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|313117445|ref|YP_004044428.1|	-	0.013	15.6	0.0	0.018	15.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|313117445|ref|YP_004044428.1|	-	0.018	14.7	0.0	0.027	14.1	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
TFIIA_gamma_N	PF02268.16	gi|313117445|ref|YP_004044428.1|	-	0.026	14.6	0.3	0.13	12.3	0.2	2.1	2	0	0	2	2	2	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
HTH_micro	PF17007.5	gi|313117445|ref|YP_004044428.1|	-	0.042	12.7	0.0	0.042	12.7	0.0	1.0	1	0	0	1	1	1	0	HTH-like
Lactamase_B_2	PF12706.7	gi|313117449|ref|YP_004044432.1|	-	4.8e-06	26.2	0.1	8.6e-06	25.4	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|313117449|ref|YP_004044432.1|	-	0.00019	21.5	4.7	0.00035	20.6	4.7	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Amdase	PF17645.1	gi|313117450|ref|YP_004044433.1|	-	1.1e-37	129.8	0.0	1.4e-37	129.5	0.0	1.0	1	0	0	1	1	1	1	Arylmalonate	decarboxylase
Asp_Glu_race	PF01177.22	gi|313117450|ref|YP_004044433.1|	-	4.1e-13	49.7	0.0	5.1e-13	49.4	0.0	1.1	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
AroM	PF07302.11	gi|313117450|ref|YP_004044433.1|	-	0.069	12.5	0.0	1.9	7.9	0.1	2.8	1	1	1	2	2	2	0	AroM	protein
YnfE	PF17452.2	gi|313117450|ref|YP_004044433.1|	-	0.099	13.0	0.0	0.2	12.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	YnfE-like
Hydantoinase_B	PF02538.14	gi|313117451|ref|YP_004044434.1|	-	2.2e-208	692.9	6.3	2.5e-208	692.7	6.3	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|313117452|ref|YP_004044435.1|	-	2.7e-99	332.1	12.4	7.2e-98	327.4	8.2	2.2	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|313117452|ref|YP_004044435.1|	-	2.6e-52	177.1	3.0	1.3e-51	174.8	0.7	2.5	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|313117452|ref|YP_004044435.1|	-	6.7e-05	21.7	3.9	0.0096	14.6	0.9	2.5	2	0	0	2	2	2	2	MutL	protein
BcrAD_BadFG	PF01869.20	gi|313117452|ref|YP_004044435.1|	-	0.0076	15.8	3.7	0.12	11.8	3.6	2.9	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Nramp	PF01566.18	gi|313117453|ref|YP_004044436.1|	-	5.8e-95	318.3	25.9	7.8e-95	317.9	25.9	1.2	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
Ceramidase	PF05875.12	gi|313117453|ref|YP_004044436.1|	-	0.11	11.9	2.7	0.13	11.7	0.3	2.1	2	1	0	2	2	2	0	Ceramidase
RHH_1	PF01402.21	gi|313117454|ref|YP_004044437.1|	-	6.2e-06	26.0	0.1	1.4e-05	24.9	0.1	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|313117454|ref|YP_004044437.1|	-	0.0002	21.2	0.0	0.00045	20.1	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
HTH_20	PF12840.7	gi|313117455|ref|YP_004044438.1|	-	1.5e-05	24.9	0.0	5.3e-05	23.2	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
zf-C2H2_jaz	PF12171.8	gi|313117456|ref|YP_004044439.1|	-	0.0032	17.7	0.1	0.0057	16.9	0.1	1.4	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
zf-met	PF12874.7	gi|313117456|ref|YP_004044439.1|	-	0.019	15.3	0.2	0.038	14.4	0.2	1.5	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DUF4764	PF15961.5	gi|313117456|ref|YP_004044439.1|	-	0.022	13.5	0.0	0.027	13.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4764)
zf-C2H2_4	PF13894.6	gi|313117456|ref|YP_004044439.1|	-	0.04	14.8	1.5	0.067	14.1	0.5	1.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF4747	PF15931.5	gi|313117456|ref|YP_004044439.1|	-	0.18	11.5	0.0	0.34	10.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4747)
FAD_binding_4	PF01565.23	gi|313117457|ref|YP_004044440.1|	-	1.5e-34	118.8	2.6	2.3e-34	118.1	2.6	1.3	1	0	0	1	1	1	1	FAD	binding	domain
BBE	PF08031.12	gi|313117457|ref|YP_004044440.1|	-	1.2e-15	57.3	1.0	3.5e-15	55.8	1.0	1.8	1	0	0	1	1	1	1	Berberine	and	berberine	like
Gas_vesicle	PF00741.18	gi|313117458|ref|YP_004044441.1|	-	2e-12	47.0	6.3	2.4e-12	46.8	6.3	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
O_anti_polymase	PF01901.16	gi|313117458|ref|YP_004044441.1|	-	0.084	12.1	0.0	0.097	11.9	0.0	1.0	1	0	0	1	1	1	0	Putative	O-antigen	polymerase
GvpL_GvpF	PF06386.11	gi|313117459|ref|YP_004044442.1|	-	2.6e-72	243.7	0.1	3e-72	243.5	0.1	1.0	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
GvpK	PF05121.12	gi|313117460|ref|YP_004044443.1|	-	3.6e-26	91.0	7.3	4.4e-26	90.7	7.3	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	K
Csm1_N	PF18504.1	gi|313117460|ref|YP_004044443.1|	-	0.0052	17.1	4.2	0.0076	16.6	4.0	1.4	1	1	0	1	1	1	1	Csm1	N-terminal	domain
Ribosomal_S13	PF00416.22	gi|313117460|ref|YP_004044443.1|	-	0.018	15.4	0.3	0.022	15.1	0.3	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S13/S18
LTV	PF04180.14	gi|313117460|ref|YP_004044443.1|	-	0.019	14.7	0.5	0.023	14.5	0.5	1.1	1	0	0	1	1	1	0	Low	temperature	viability	protein
FlxA	PF14282.6	gi|313117460|ref|YP_004044443.1|	-	0.022	14.7	1.5	0.031	14.3	1.5	1.3	1	1	0	1	1	1	0	FlxA-like	protein
Not3	PF04065.15	gi|313117460|ref|YP_004044443.1|	-	0.037	13.5	0.2	0.042	13.3	0.2	1.1	1	0	0	1	1	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
End3	PF12761.7	gi|313117460|ref|YP_004044443.1|	-	0.037	14.2	0.6	0.042	14.0	0.6	1.1	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DUF2730	PF10805.8	gi|313117460|ref|YP_004044443.1|	-	0.046	13.8	0.1	0.06	13.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Val_tRNA-synt_C	PF10458.9	gi|313117460|ref|YP_004044443.1|	-	0.058	13.7	1.4	0.16	12.3	1.4	1.7	1	0	0	1	1	1	0	Valyl	tRNA	synthetase	tRNA	binding	arm
DivIC	PF04977.15	gi|313117460|ref|YP_004044443.1|	-	0.067	13.0	1.2	0.13	12.0	1.2	1.4	1	0	0	1	1	1	0	Septum	formation	initiator
MbeD_MobD	PF04899.12	gi|313117460|ref|YP_004044443.1|	-	0.099	12.8	1.8	0.16	12.1	0.8	1.9	2	1	0	2	2	2	0	MbeD/MobD	like
PARP_reg	PF02877.14	gi|313117460|ref|YP_004044443.1|	-	0.1	12.7	0.1	0.12	12.4	0.1	1.2	1	0	0	1	1	1	0	Poly(ADP-ribose)	polymerase,	regulatory	domain
HHA	PF05321.11	gi|313117460|ref|YP_004044443.1|	-	0.16	12.3	0.4	0.31	11.4	0.1	1.7	1	1	0	1	1	1	0	Haemolysin	expression	modulating	protein
LPP	PF04728.13	gi|313117460|ref|YP_004044443.1|	-	0.37	11.2	2.2	0.63	10.5	0.8	2.2	2	1	0	2	2	2	0	Lipoprotein	leucine-zipper
SlyX	PF04102.12	gi|313117460|ref|YP_004044443.1|	-	1.9	9.2	6.3	3.2	8.4	4.9	2.0	1	1	0	2	2	2	0	SlyX
DUF1192	PF06698.11	gi|313117460|ref|YP_004044443.1|	-	4.1	7.5	7.9	1.7	8.8	3.3	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1192)
Gas_vesicle	PF00741.18	gi|313117461|ref|YP_004044444.1|	-	1.1e-15	57.4	3.0	1.4e-15	57.1	3.0	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
SASP_gamma	PF04259.14	gi|313117461|ref|YP_004044444.1|	-	0.015	15.8	1.7	0.037	14.5	1.8	1.6	1	1	0	1	1	1	0	Small,	acid-soluble	spore	protein,	gamma-type
DUF4407	PF14362.6	gi|313117462|ref|YP_004044445.1|	-	4.8	6.4	7.4	4.7	6.5	7.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
GvpH	PF05455.11	gi|313117463|ref|YP_004044446.1|	-	5.1e-48	163.5	11.0	6.1e-48	163.2	11.0	1.0	1	0	0	1	1	1	1	GvpH
Mod_r	PF07200.13	gi|313117464|ref|YP_004044447.1|	-	0.0037	17.4	1.9	0.0042	17.2	1.9	1.0	1	0	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
GvpG	PF05120.12	gi|313117464|ref|YP_004044447.1|	-	0.0051	16.8	1.8	0.006	16.6	1.8	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	G
Orthopox_A49R	PF06489.11	gi|313117464|ref|YP_004044447.1|	-	0.0081	16.4	0.0	0.0093	16.2	0.0	1.1	1	0	0	1	1	1	1	Orthopoxvirus	A49R	protein
THOC7	PF05615.13	gi|313117464|ref|YP_004044447.1|	-	0.027	14.8	3.4	0.031	14.6	3.4	1.1	1	0	0	1	1	1	0	Tho	complex	subunit	7
SHOCT	PF09851.9	gi|313117464|ref|YP_004044447.1|	-	0.073	12.8	4.2	0.13	12.0	2.1	2.3	2	0	0	2	2	2	0	Short	C-terminal	domain
GvpL_GvpF	PF06386.11	gi|313117465|ref|YP_004044448.1|	-	3.2e-41	141.9	0.7	7.9e-22	78.4	0.1	2.0	2	0	0	2	2	2	2	Gas	vesicle	synthesis	protein	GvpL/GvpF
PadR	PF03551.14	gi|313117466|ref|YP_004044449.1|	-	3.5e-09	36.5	0.0	8.3e-09	35.3	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_40	PF14493.6	gi|313117466|ref|YP_004044449.1|	-	0.01	16.3	0.0	0.02	15.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|313117466|ref|YP_004044449.1|	-	0.014	15.5	0.0	0.02	15.0	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_5	PF01022.20	gi|313117466|ref|YP_004044449.1|	-	0.024	14.5	0.0	0.1	12.5	0.0	2.0	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_33	PF13592.6	gi|313117466|ref|YP_004044449.1|	-	0.11	12.1	0.0	12	5.7	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
GvpD	PF07088.11	gi|313117467|ref|YP_004044450.1|	-	5.5e-233	773.9	0.0	7.7e-233	773.4	0.0	1.2	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
ATPase	PF06745.13	gi|313117467|ref|YP_004044450.1|	-	4e-12	46.0	0.0	8.7e-09	35.1	0.0	2.4	2	0	0	2	2	2	2	KaiC
AAA_16	PF13191.6	gi|313117467|ref|YP_004044450.1|	-	0.014	15.7	0.0	0.033	14.6	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|313117467|ref|YP_004044450.1|	-	0.036	13.7	0.1	0.14	11.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|313117467|ref|YP_004044450.1|	-	0.062	13.5	0.0	0.19	11.9	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
PAXNEB	PF05625.11	gi|313117467|ref|YP_004044450.1|	-	0.19	10.8	0.1	0.33	10.0	0.1	1.3	1	0	0	1	1	1	0	PAXNEB	protein
DUF2075	PF09848.9	gi|313117467|ref|YP_004044450.1|	-	0.2	10.8	0.0	0.3	10.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Gas_vesicle	PF00741.18	gi|313117468|ref|YP_004044451.1|	-	1.5e-14	53.8	5.7	2e-14	53.4	5.7	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
Halo_GVPC	PF05465.13	gi|313117469|ref|YP_004044452.1|	-	5.6e-68	224.5	81.6	2.5e-12	46.7	3.8	7.3	6	1	1	7	7	7	7	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
GAS	PF13851.6	gi|313117469|ref|YP_004044452.1|	-	5.3e-07	29.2	4.0	0.0012	18.2	0.1	3.8	1	1	3	4	4	4	2	Growth-arrest	specific	micro-tubule	binding
TPR_MLP1_2	PF07926.12	gi|313117469|ref|YP_004044452.1|	-	6.1e-07	29.6	10.7	0.0028	17.7	0.3	3.3	1	1	2	3	3	3	2	TPR/MLP1/MLP2-like	protein
AAA_13	PF13166.6	gi|313117469|ref|YP_004044452.1|	-	5.1e-06	25.4	7.5	5.1e-06	25.4	7.5	1.5	1	1	1	2	2	2	2	AAA	domain
CorA	PF01544.18	gi|313117469|ref|YP_004044452.1|	-	1.6e-05	24.4	10.7	3.2e-05	23.4	4.0	2.2	1	1	0	2	2	2	1	CorA-like	Mg2+	transporter	protein
APG17	PF04108.12	gi|313117469|ref|YP_004044452.1|	-	3e-05	23.3	8.5	1.6	7.7	0.1	3.6	1	1	1	2	2	2	1	Autophagy	protein	Apg17
DUF16	PF01519.16	gi|313117469|ref|YP_004044452.1|	-	5.2e-05	23.7	2.3	0.11	13.0	0.1	3.1	2	1	1	3	3	3	1	Protein	of	unknown	function	DUF16
Vps5	PF09325.10	gi|313117469|ref|YP_004044452.1|	-	8.8e-05	22.2	8.5	0.0019	17.8	3.0	2.2	1	1	1	2	2	2	2	Vps5	C	terminal	like
DUF1664	PF07889.12	gi|313117469|ref|YP_004044452.1|	-	9.5e-05	22.4	1.7	0.084	12.9	0.2	3.2	1	1	1	3	3	3	2	Protein	of	unknown	function	(DUF1664)
ZapB	PF06005.12	gi|313117469|ref|YP_004044452.1|	-	0.00013	22.3	4.3	0.2	12.1	0.1	4.4	5	0	0	5	5	4	1	Cell	division	protein	ZapB
Bacillus_HBL	PF05791.11	gi|313117469|ref|YP_004044452.1|	-	0.00014	21.7	4.0	0.4	10.5	0.1	3.4	1	1	2	3	3	3	2	Bacillus	haemolytic	enterotoxin	(HBL)
Tup_N	PF08581.10	gi|313117469|ref|YP_004044452.1|	-	0.00014	22.0	8.8	0.0036	17.6	0.3	3.8	1	1	3	4	4	4	1	Tup	N-terminal
AIP3	PF03915.13	gi|313117469|ref|YP_004044452.1|	-	0.00028	20.1	1.4	0.00038	19.7	1.1	1.4	1	1	0	1	1	1	1	Actin	interacting	protein	3
OmpH	PF03938.14	gi|313117469|ref|YP_004044452.1|	-	0.00067	20.0	15.2	0.1	13.0	0.6	3.3	1	1	2	3	3	3	2	Outer	membrane	protein	(OmpH-like)
LOH1CR12	PF10158.9	gi|313117469|ref|YP_004044452.1|	-	0.00092	19.2	3.4	4.2	7.4	0.2	3.7	1	1	3	4	4	4	0	Tumour	suppressor	protein
Filament	PF00038.21	gi|313117469|ref|YP_004044452.1|	-	0.00098	18.8	12.4	0.0022	17.6	12.4	1.7	1	1	0	1	1	1	1	Intermediate	filament	protein
HsbA	PF12296.8	gi|313117469|ref|YP_004044452.1|	-	0.00098	19.5	0.3	1.7	9.1	0.2	3.0	1	1	1	2	2	2	1	Hydrophobic	surface	binding	protein	A
Seryl_tRNA_N	PF02403.22	gi|313117469|ref|YP_004044452.1|	-	0.001	19.3	5.3	1.3	9.3	0.1	3.8	1	1	3	4	4	4	1	Seryl-tRNA	synthetase	N-terminal	domain
Spc7	PF08317.11	gi|313117469|ref|YP_004044452.1|	-	0.0012	17.8	6.9	0.066	12.1	1.1	2.8	1	1	2	3	3	3	2	Spc7	kinetochore	protein
SHE3	PF17078.5	gi|313117469|ref|YP_004044452.1|	-	0.002	17.9	2.2	0.04	13.6	1.4	2.3	1	1	1	2	2	2	1	SWI5-dependent	HO	expression	protein	3
Fib_alpha	PF08702.10	gi|313117469|ref|YP_004044452.1|	-	0.0027	17.9	0.3	0.24	11.6	0.1	2.9	1	1	2	3	3	2	1	Fibrinogen	alpha/beta	chain	family
HalX	PF08663.10	gi|313117469|ref|YP_004044452.1|	-	0.0031	17.8	36.6	0.032	14.6	1.9	6.2	2	1	4	6	6	6	2	HalX	domain
TACC_C	PF05010.14	gi|313117469|ref|YP_004044452.1|	-	0.0053	16.6	10.0	0.057	13.2	0.8	2.9	1	1	0	2	2	2	2	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
YgaB	PF14182.6	gi|313117469|ref|YP_004044452.1|	-	0.0053	17.1	6.0	0.33	11.4	0.1	4.5	2	2	2	5	5	4	1	YgaB-like	protein
Lectin_N	PF03954.14	gi|313117469|ref|YP_004044452.1|	-	0.0059	16.4	0.9	3.9	7.2	0.3	3.8	1	1	1	2	2	2	0	Hepatic	lectin,	N-terminal	domain
ApoLp-III	PF07464.11	gi|313117469|ref|YP_004044452.1|	-	0.0073	16.4	3.1	2	8.5	0.3	3.2	1	1	2	3	3	3	1	Apolipophorin-III	precursor	(apoLp-III)
Med9	PF07544.13	gi|313117469|ref|YP_004044452.1|	-	0.0086	16.1	0.3	0.94	9.6	0.0	3.7	3	2	1	4	4	3	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF4407	PF14362.6	gi|313117469|ref|YP_004044452.1|	-	0.0093	15.4	13.7	0.38	10.1	9.6	2.7	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4407)
FAM184	PF15665.5	gi|313117469|ref|YP_004044452.1|	-	0.0096	15.7	20.2	0.15	11.8	13.3	2.9	1	1	2	3	3	3	1	Family	with	sequence	similarity	184,	A	and	B
Baculo_PEP_C	PF04513.12	gi|313117469|ref|YP_004044452.1|	-	0.011	15.8	1.7	7.3	6.6	0.0	3.3	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Golgin_A5	PF09787.9	gi|313117469|ref|YP_004044452.1|	-	0.019	14.5	6.5	1.2	8.6	0.7	2.4	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
CagZ	PF09053.10	gi|313117469|ref|YP_004044452.1|	-	0.023	14.3	3.0	0.05	13.2	1.7	2.0	1	1	0	2	2	2	0	CagZ
NYD-SP28	PF14772.6	gi|313117469|ref|YP_004044452.1|	-	0.025	14.6	5.6	15	5.7	0.4	3.9	1	1	2	4	4	4	0	Sperm	tail
Fez1	PF06818.15	gi|313117469|ref|YP_004044452.1|	-	0.025	15.0	6.4	0.32	11.4	2.5	2.3	1	1	1	2	2	2	0	Fez1
CALCOCO1	PF07888.11	gi|313117469|ref|YP_004044452.1|	-	0.038	12.9	4.6	0.17	10.7	1.1	2.3	1	1	1	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
HIP1_clath_bdg	PF16515.5	gi|313117469|ref|YP_004044452.1|	-	0.039	14.6	6.8	7.4	7.3	0.5	4.0	1	1	4	5	5	5	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
She9_MDM33	PF05546.11	gi|313117469|ref|YP_004044452.1|	-	0.05	13.4	3.5	2.2	8.0	0.1	3.5	1	1	2	3	3	3	0	She9	/	Mdm33	family
HAP1_N	PF04849.13	gi|313117469|ref|YP_004044452.1|	-	0.05	12.8	5.5	0.12	11.6	0.7	2.3	1	1	1	2	2	2	0	HAP1	N-terminal	conserved	region
DUF724	PF05266.14	gi|313117469|ref|YP_004044452.1|	-	0.053	13.4	7.4	1.7	8.4	0.6	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF848	PF05852.11	gi|313117469|ref|YP_004044452.1|	-	0.064	13.4	13.9	1.4	9.1	0.7	3.7	1	1	2	3	3	3	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
CREPT	PF16566.5	gi|313117469|ref|YP_004044452.1|	-	0.064	13.4	5.3	0.72	10.0	0.7	3.0	1	1	3	4	4	4	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
ECM11	PF15463.6	gi|313117469|ref|YP_004044452.1|	-	0.08	13.5	0.5	0.08	13.5	0.5	3.3	2	2	2	4	4	3	0	Extracellular	mutant	protein	11
APG6_N	PF17675.1	gi|313117469|ref|YP_004044452.1|	-	0.081	13.4	16.3	0.51	10.9	3.3	3.1	1	1	2	3	3	3	0	Apg6	coiled-coil	region
PIN_8	PF18476.1	gi|313117469|ref|YP_004044452.1|	-	0.092	12.6	7.6	0.4	10.5	2.5	2.3	1	1	1	2	2	2	0	PIN	like	domain
Tmemb_cc2	PF10267.9	gi|313117469|ref|YP_004044452.1|	-	0.099	11.8	7.0	5.3	6.1	0.4	3.1	1	1	2	3	3	3	0	Predicted	transmembrane	and	coiled-coil	2	protein
CHD5	PF04420.14	gi|313117469|ref|YP_004044452.1|	-	0.11	12.3	0.4	2.4	8.0	0.0	2.8	1	1	3	4	4	4	0	CHD5-like	protein
DUF4200	PF13863.6	gi|313117469|ref|YP_004044452.1|	-	0.12	12.8	14.5	0.19	12.2	1.1	4.0	1	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4200)
DUF3452	PF11934.8	gi|313117469|ref|YP_004044452.1|	-	0.12	11.9	1.4	12	5.5	0.1	3.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3452)
EHN	PF06441.12	gi|313117469|ref|YP_004044452.1|	-	0.13	12.7	0.1	2	8.8	0.1	2.6	1	1	0	1	1	1	0	Epoxide	hydrolase	N	terminus
GldM_N	PF12081.8	gi|313117469|ref|YP_004044452.1|	-	0.13	12.3	8.5	2.8	8.0	3.3	2.9	1	1	1	2	2	2	0	GldM	N-terminal	domain
DUF3450	PF11932.8	gi|313117469|ref|YP_004044452.1|	-	0.16	11.2	7.6	1.2	8.4	2.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DASH_Spc34	PF08657.10	gi|313117469|ref|YP_004044452.1|	-	0.16	11.7	6.8	1.3	8.8	0.8	3.0	1	1	1	2	2	2	0	DASH	complex	subunit	Spc34
DUF2384	PF09722.10	gi|313117469|ref|YP_004044452.1|	-	0.17	12.0	1.2	9.5	6.4	0.0	3.4	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF2384)
UPF0242	PF06785.11	gi|313117469|ref|YP_004044452.1|	-	0.19	11.8	8.2	3.2	7.8	1.2	2.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Octopine_DH	PF02317.17	gi|313117469|ref|YP_004044452.1|	-	0.21	11.7	4.4	0.65	10.1	0.7	2.3	1	1	1	2	2	2	0	NAD/NADP	octopine/nopaline	dehydrogenase,	alpha-helical	domain
Spectrin	PF00435.21	gi|313117469|ref|YP_004044452.1|	-	0.23	12.0	10.4	4.2	7.9	0.9	4.3	1	1	3	4	4	4	0	Spectrin	repeat
CENP-F_leu_zip	PF10473.9	gi|313117469|ref|YP_004044452.1|	-	0.26	11.3	5.4	3.3	7.7	1.6	3.3	1	1	3	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
T4SS	PF07996.11	gi|313117469|ref|YP_004044452.1|	-	0.28	11.6	6.6	9.4	6.6	1.6	2.9	1	1	1	2	2	2	0	Type	IV	secretion	system	proteins
DUF2203	PF09969.9	gi|313117469|ref|YP_004044452.1|	-	0.28	11.9	10.8	3.8	8.2	0.5	3.2	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
DUF2605	PF10792.9	gi|313117469|ref|YP_004044452.1|	-	0.44	10.5	3.5	5.1	7.1	0.0	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2605)
WXG100	PF06013.12	gi|313117469|ref|YP_004044452.1|	-	0.48	10.7	18.1	1.4	9.2	1.3	4.5	1	1	5	6	6	6	0	Proteins	of	100	residues	with	WXG
ATG16	PF08614.11	gi|313117469|ref|YP_004044452.1|	-	0.57	10.4	11.7	7.9	6.7	4.4	3.2	1	1	2	3	3	3	0	Autophagy	protein	16	(ATG16)
Cnn_1N	PF07989.11	gi|313117469|ref|YP_004044452.1|	-	0.61	10.3	3.9	7.3	6.8	0.1	3.7	1	1	4	5	5	4	0	Centrosomin	N-terminal	motif	1
AAA_25	PF13481.6	gi|313117469|ref|YP_004044452.1|	-	0.64	9.6	3.8	17	4.9	0.2	2.7	2	0	0	2	2	2	0	AAA	domain
DUF2508	PF10704.9	gi|313117469|ref|YP_004044452.1|	-	0.67	10.2	16.5	6.9	6.9	0.1	5.4	2	1	3	6	6	5	0	Protein	of	unknown	function	(DUF2508)
DMPK_coil	PF08826.10	gi|313117469|ref|YP_004044452.1|	-	0.72	10.0	6.0	17	5.6	0.2	3.8	4	1	0	4	4	3	0	DMPK	coiled	coil	domain	like
Goodbye	PF17109.5	gi|313117469|ref|YP_004044452.1|	-	0.82	10.1	5.5	48	4.4	0.4	4.0	1	1	4	5	5	5	0	fungal	STAND	N-terminal	Goodbye	domain
Rab5-bind	PF09311.11	gi|313117469|ref|YP_004044452.1|	-	0.88	8.9	6.3	1.2	8.5	2.4	2.2	1	1	1	2	2	2	0	Rabaptin-like	protein
MSA-2c	PF12238.8	gi|313117469|ref|YP_004044452.1|	-	0.93	9.5	12.3	3.3	7.7	1.0	3.0	1	1	2	3	3	3	0	Merozoite	surface	antigen	2c
HAUS5	PF14817.6	gi|313117469|ref|YP_004044452.1|	-	1.1	8.0	5.1	4.1	6.1	2.1	2.4	1	1	2	3	3	3	0	HAUS	augmin-like	complex	subunit	5
Phasin	PF05597.11	gi|313117469|ref|YP_004044452.1|	-	1.3	9.0	8.8	7.6	6.6	0.1	3.6	1	1	3	4	4	4	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DHR10	PF18595.1	gi|313117469|ref|YP_004044452.1|	-	1.3	9.1	12.1	0.79	9.8	0.6	3.8	1	1	2	3	3	3	0	Designed	helical	repeat	protein	10	domain
MAD	PF05557.13	gi|313117469|ref|YP_004044452.1|	-	1.3	7.3	7.1	0.16	10.3	0.3	2.2	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
DUF4715	PF15835.5	gi|313117469|ref|YP_004044452.1|	-	1.6	8.8	6.9	5.1	7.2	0.5	3.2	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4715)
FUSC	PF04632.12	gi|313117469|ref|YP_004044452.1|	-	1.8	7.0	12.3	32	2.9	12.2	2.1	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
TMF_TATA_bd	PF12325.8	gi|313117469|ref|YP_004044452.1|	-	2.4	8.4	8.9	6.1	7.1	1.2	3.4	1	1	3	4	4	4	0	TATA	element	modulatory	factor	1	TATA	binding
MIP-T3_C	PF17749.1	gi|313117469|ref|YP_004044452.1|	-	2.4	8.1	6.5	39	4.2	0.7	3.1	1	1	0	2	2	2	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
LPP	PF04728.13	gi|313117469|ref|YP_004044452.1|	-	3.2	8.2	15.3	2.4	8.6	0.1	5.2	5	2	1	6	6	4	0	Lipoprotein	leucine-zipper
CCP_MauG	PF03150.14	gi|313117469|ref|YP_004044452.1|	-	3.6	8.2	13.9	8.1	7.1	1.0	3.3	1	1	2	3	3	3	0	Di-haem	cytochrome	c	peroxidase
Rotamase	PF00639.21	gi|313117469|ref|YP_004044452.1|	-	3.6	8.6	16.4	15	6.6	0.2	4.2	1	1	2	4	4	4	0	PPIC-type	PPIASE	domain
TraF_2	PF13729.6	gi|313117469|ref|YP_004044452.1|	-	7.4	5.9	14.8	1.2	8.4	0.5	3.1	1	1	2	3	3	3	0	F	plasmid	transfer	operon,	TraF,	protein
ROS_MUCR	PF05443.11	gi|313117470|ref|YP_004044453.1|	-	7e-08	32.6	0.0	8.2e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	ROS/MUCR	transcriptional	regulator	protein
Cas_Csd1	PF09709.10	gi|313117470|ref|YP_004044453.1|	-	0.15	10.7	0.1	0.16	10.6	0.1	1.0	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csd1)
AAA_5	PF07728.14	gi|313117471|ref|YP_004044454.1|	-	1.7e-18	66.9	0.0	4.7e-17	62.3	0.0	2.5	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|313117471|ref|YP_004044454.1|	-	1e-05	26.0	0.0	7e-05	23.3	0.0	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|313117471|ref|YP_004044454.1|	-	2e-05	25.0	0.0	5.8e-05	23.5	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.11	gi|313117471|ref|YP_004044454.1|	-	5.3e-05	23.1	0.0	0.0095	15.8	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|313117471|ref|YP_004044454.1|	-	0.00011	21.8	0.0	0.0002	20.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|313117471|ref|YP_004044454.1|	-	0.00013	21.8	0.0	0.00033	20.4	0.0	1.7	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|313117471|ref|YP_004044454.1|	-	0.0017	17.9	0.0	0.0075	15.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|313117471|ref|YP_004044454.1|	-	0.0059	16.3	0.0	0.13	12.0	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|313117471|ref|YP_004044454.1|	-	0.006	16.5	0.0	0.02	14.8	0.0	1.9	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|313117471|ref|YP_004044454.1|	-	0.0094	16.5	0.1	0.019	15.5	0.0	1.8	2	1	0	2	2	1	1	ABC	transporter
AAA_33	PF13671.6	gi|313117471|ref|YP_004044454.1|	-	0.013	15.7	2.6	0.046	13.9	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
NACHT	PF05729.12	gi|313117471|ref|YP_004044454.1|	-	0.018	15.0	0.0	0.055	13.4	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
TIP49	PF06068.13	gi|313117471|ref|YP_004044454.1|	-	0.019	14.2	0.0	0.042	13.0	0.0	1.5	1	0	0	1	1	1	0	TIP49	P-loop	domain
IPT	PF01745.16	gi|313117471|ref|YP_004044454.1|	-	0.02	14.3	0.0	0.033	13.6	0.0	1.4	1	0	0	1	1	1	0	Isopentenyl	transferase
PhoH	PF02562.16	gi|313117471|ref|YP_004044454.1|	-	0.022	14.2	0.0	0.11	11.9	0.0	2.1	3	0	0	3	3	3	0	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|313117471|ref|YP_004044454.1|	-	0.024	14.7	0.0	0.088	12.9	0.0	2.0	2	1	0	2	2	2	0	Sigma-54	interaction	domain
AAA_22	PF13401.6	gi|313117471|ref|YP_004044454.1|	-	0.029	14.6	0.0	0.099	12.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.12	gi|313117471|ref|YP_004044454.1|	-	0.038	13.7	0.0	0.28	10.9	0.0	2.1	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NB-ARC	PF00931.22	gi|313117471|ref|YP_004044454.1|	-	0.07	12.3	0.1	0.33	10.1	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
DUF2201_N	PF13203.6	gi|313117471|ref|YP_004044454.1|	-	0.094	12.3	1.0	0.16	11.5	1.0	1.3	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
AAA_14	PF13173.6	gi|313117471|ref|YP_004044454.1|	-	0.1	12.6	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF4192	PF13830.6	gi|313117471|ref|YP_004044454.1|	-	1.2	9.1	4.9	0.84	9.6	2.7	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4192)
GvpO	PF05800.11	gi|313117472|ref|YP_004044455.1|	-	8.5e-34	115.4	0.3	1.3e-33	114.8	0.3	1.2	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpO
PGA2	PF07543.12	gi|313117472|ref|YP_004044455.1|	-	0.055	13.5	0.3	0.079	12.9	0.3	1.3	1	0	0	1	1	1	0	Protein	trafficking	PGA2
FTHFS	PF01268.19	gi|313117473|ref|YP_004044456.1|	-	3.7e-242	804.5	0.0	4.2e-242	804.3	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
HATPase_c	PF02518.26	gi|313117474|ref|YP_004044457.1|	-	2e-17	63.7	0.0	1.4e-16	61.0	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|313117474|ref|YP_004044457.1|	-	2.7e-07	30.4	0.0	4.2e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|313117474|ref|YP_004044457.1|	-	1.6e-06	28.1	0.1	4.1e-06	26.8	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|313117474|ref|YP_004044457.1|	-	2e-06	27.5	0.1	3.6e-06	26.7	0.1	1.5	1	1	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|313117474|ref|YP_004044457.1|	-	2.9e-05	24.0	0.4	7.5e-05	22.7	0.4	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.6	gi|313117474|ref|YP_004044457.1|	-	0.025	14.3	0.0	0.05	13.3	0.0	1.4	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_3	PF08447.12	gi|313117475|ref|YP_004044458.1|	-	6.5e-48	161.0	0.1	1.1e-18	67.3	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|313117475|ref|YP_004044458.1|	-	2e-41	140.7	1.1	2.4e-16	59.9	0.1	3.5	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|313117475|ref|YP_004044458.1|	-	8e-38	128.9	0.3	1.1e-14	54.3	0.0	3.2	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|313117475|ref|YP_004044458.1|	-	1.7e-31	108.5	0.1	5.4e-12	45.9	0.0	3.3	3	0	0	3	3	3	3	PAS	domain
Response_reg	PF00072.24	gi|313117475|ref|YP_004044458.1|	-	1.1e-20	73.9	0.0	2.7e-20	72.6	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|313117475|ref|YP_004044458.1|	-	3.6e-16	58.8	0.7	0.00011	22.1	0.0	3.4	3	0	0	3	3	3	3	PAS	domain
PAS_11	PF14598.6	gi|313117475|ref|YP_004044458.1|	-	2.2e-06	27.8	0.0	0.0002	21.5	0.0	3.0	3	0	0	3	3	3	1	PAS	domain
PAS_7	PF12860.7	gi|313117475|ref|YP_004044458.1|	-	0.0009	19.4	4.2	3	8.0	0.0	4.6	3	2	1	4	4	4	2	PAS	fold
PAS_12	PF18095.1	gi|313117475|ref|YP_004044458.1|	-	0.0027	17.4	0.0	0.22	11.1	0.1	2.2	2	0	0	2	2	2	1	UPF0242	C-terminal	PAS-like	domain
OKR_DC_1_N	PF03709.15	gi|313117475|ref|YP_004044458.1|	-	0.009	16.3	0.0	0.026	14.8	0.0	1.8	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Glyco_tranf_2_4	PF13704.6	gi|313117475|ref|YP_004044458.1|	-	0.046	14.2	0.1	0.5	10.9	0.1	2.5	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
Molybdopterin	PF00384.22	gi|313117476|ref|YP_004044459.1|	-	5.9e-85	285.8	0.0	7.3e-85	285.5	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|313117476|ref|YP_004044459.1|	-	1.9e-31	108.3	0.0	3.8e-31	107.4	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|313117476|ref|YP_004044459.1|	-	1.2e-26	92.6	0.8	2.6e-26	91.5	0.8	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|313117476|ref|YP_004044459.1|	-	2.8e-12	46.0	1.1	9.9e-12	44.2	1.1	2.1	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4_7	PF12838.7	gi|313117476|ref|YP_004044459.1|	-	4.4e-10	40.0	8.0	3.9e-07	30.5	8.7	3.5	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Molybdop_Fe4S4	PF04879.16	gi|313117476|ref|YP_004044459.1|	-	1.7e-09	37.5	0.0	6e-09	35.8	0.0	2.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_21	PF14697.6	gi|313117476|ref|YP_004044459.1|	-	2.4e-09	37.2	9.0	2.4e-09	37.2	9.0	2.8	4	0	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|313117476|ref|YP_004044459.1|	-	3.6e-07	30.0	20.7	4.8e-05	23.2	2.7	3.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|313117476|ref|YP_004044459.1|	-	6.4e-07	28.9	23.0	0.00027	20.6	2.7	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|313117476|ref|YP_004044459.1|	-	3.4e-06	27.1	8.1	3.4e-06	27.1	8.1	3.7	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|313117476|ref|YP_004044459.1|	-	3.2e-05	24.3	7.3	3.2e-05	24.3	7.3	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|313117476|ref|YP_004044459.1|	-	0.00038	20.5	13.5	0.00038	20.5	13.5	3.4	3	1	1	4	4	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|313117476|ref|YP_004044459.1|	-	0.005	17.7	2.4	0.005	17.7	2.4	3.4	3	0	0	3	3	3	1	4Fe-4S	double	cluster	binding	domain
CDC48_N	PF02359.18	gi|313117476|ref|YP_004044459.1|	-	0.0088	16.2	0.0	0.021	15.0	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Fer4_22	PF17179.4	gi|313117476|ref|YP_004044459.1|	-	0.012	16.5	11.2	0.63	10.9	2.1	3.8	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|313117476|ref|YP_004044459.1|	-	0.015	15.3	2.5	0.015	15.3	2.5	4.4	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|313117476|ref|YP_004044459.1|	-	0.018	15.2	13.3	0.068	13.4	2.0	2.6	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|313117476|ref|YP_004044459.1|	-	0.3	11.7	15.3	0.92	10.1	3.7	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|313117476|ref|YP_004044459.1|	-	0.42	11.4	16.6	5.4	7.8	11.7	4.1	3	1	1	4	4	3	0	4Fe-4S	single	cluster	domain
WW_1	PF18507.1	gi|313117477|ref|YP_004044460.1|	-	0.22	11.2	0.4	0.35	10.6	0.4	1.3	1	0	0	1	1	1	0	WW	domain
Zn-ribbon_8	PF09723.10	gi|313117478|ref|YP_004044461.1|	-	0.0062	16.6	0.5	0.0062	16.6	0.5	1.6	2	0	0	2	2	2	1	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|313117478|ref|YP_004044461.1|	-	0.008	16.1	0.1	0.017	15.0	0.1	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|313117478|ref|YP_004044461.1|	-	0.01	15.3	4.2	0.15	11.6	0.9	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-RING_7	PF02591.15	gi|313117478|ref|YP_004044461.1|	-	0.05	13.8	1.7	0.087	13.0	0.1	2.1	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|313117478|ref|YP_004044461.1|	-	0.083	12.3	0.1	0.083	12.3	0.1	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|313117478|ref|YP_004044461.1|	-	0.13	12.5	0.3	0.13	12.5	0.3	2.4	2	1	0	2	2	2	0	zinc-ribbon
Prok-RING_1	PF14446.6	gi|313117478|ref|YP_004044461.1|	-	7.1	6.6	8.0	73	3.4	8.0	2.3	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Hexapep	PF00132.24	gi|313117479|ref|YP_004044462.1|	-	1.3e-10	40.5	6.6	4.5e-06	26.2	1.9	2.4	2	0	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.14	gi|313117479|ref|YP_004044462.1|	-	5.1e-06	26.8	0.0	8.7e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.6	gi|313117479|ref|YP_004044462.1|	-	0.0045	16.7	0.9	0.0045	16.7	0.9	2.5	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
E1-E2_ATPase	PF00122.20	gi|313117480|ref|YP_004044463.1|	-	1.8e-56	190.5	3.7	1.8e-56	190.5	3.7	2.9	3	0	0	3	3	3	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|313117480|ref|YP_004044463.1|	-	1.7e-34	119.1	6.4	1.7e-34	119.1	6.4	2.3	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|313117480|ref|YP_004044463.1|	-	4.2e-28	99.1	4.8	2e-27	96.9	4.8	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|313117480|ref|YP_004044463.1|	-	3.2e-17	62.0	0.0	6.5e-17	61.0	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|313117480|ref|YP_004044463.1|	-	6.2e-14	51.8	0.0	1.8e-13	50.4	0.0	1.8	1	1	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|313117480|ref|YP_004044463.1|	-	4.7e-06	26.5	0.2	0.00016	21.5	0.6	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|313117480|ref|YP_004044463.1|	-	0.035	14.5	3.0	0.043	14.2	0.7	2.3	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
EMP70	PF02990.16	gi|313117480|ref|YP_004044463.1|	-	0.05	12.3	2.7	0.087	11.5	2.7	1.3	1	0	0	1	1	1	0	Endomembrane	protein	70
DUF2417	PF10329.9	gi|313117480|ref|YP_004044463.1|	-	4.1	6.7	5.3	4.6	6.6	3.8	1.7	2	0	0	2	2	2	0	Region	of	unknown	function	(DUF2417)
VIT1	PF01988.19	gi|313117481|ref|YP_004044464.1|	-	1.9e-09	37.7	2.3	1.9e-09	37.7	2.3	2.0	1	1	0	2	2	2	1	VIT	family
GPHR_N	PF12537.8	gi|313117481|ref|YP_004044464.1|	-	4	7.6	8.5	85	3.3	6.6	3.4	2	1	0	2	2	2	0	The	Golgi	pH	Regulator	(GPHR)	Family	N-terminal
DUF211	PF02680.14	gi|313117482|ref|YP_004044465.1|	-	9.6e-34	115.4	0.6	1.1e-33	115.3	0.6	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
Phage_integrase	PF00589.22	gi|313117483|ref|YP_004044466.1|	-	3.7e-09	36.6	0.0	5e-08	32.9	0.0	2.6	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|313117483|ref|YP_004044466.1|	-	0.015	15.6	0.0	0.029	14.7	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
FdsD	PF11390.8	gi|313117483|ref|YP_004044466.1|	-	0.039	14.3	0.0	0.28	11.6	0.0	2.2	2	0	0	2	2	2	0	NADH-dependant	formate	dehydrogenase	delta	subunit	FdsD
BATS	PF06968.13	gi|313117484|ref|YP_004044467.1|	-	5.6e-15	55.2	0.0	1.3e-14	54.1	0.0	1.6	1	0	0	1	1	1	1	Biotin	and	Thiamin	Synthesis	associated	domain
Radical_SAM	PF04055.21	gi|313117484|ref|YP_004044467.1|	-	2.8e-14	53.8	0.2	4.1e-12	46.8	0.0	2.3	2	0	0	2	2	2	2	Radical	SAM	superfamily
Pterin_bind	PF00809.22	gi|313117484|ref|YP_004044467.1|	-	0.096	12.3	0.2	0.23	11.1	0.2	1.6	1	1	0	1	1	1	0	Pterin	binding	enzyme
ELFV_dehydrog	PF00208.21	gi|313117485|ref|YP_004044468.1|	-	0.00046	20.0	0.1	0.0009	19.0	0.1	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|313117485|ref|YP_004044468.1|	-	0.0089	16.9	3.3	0.04	14.8	0.2	2.9	3	1	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Aminotran_1_2	PF00155.21	gi|313117486|ref|YP_004044469.1|	-	1.8e-61	208.4	0.0	2.1e-61	208.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_3	PF00202.21	gi|313117486|ref|YP_004044469.1|	-	0.0018	17.0	0.0	0.0026	16.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-III
Cys_Met_Meta_PP	PF01053.20	gi|313117486|ref|YP_004044469.1|	-	0.0035	15.9	0.0	0.009	14.6	0.0	1.5	1	1	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|313117486|ref|YP_004044469.1|	-	0.0079	15.5	0.5	0.03	13.7	0.9	1.8	2	1	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
AAA_26	PF13500.6	gi|313117487|ref|YP_004044470.1|	-	2.7e-33	115.5	0.0	3.3e-33	115.2	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|313117487|ref|YP_004044470.1|	-	5e-07	29.8	0.0	1.3e-06	28.5	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF1611	PF07755.11	gi|313117487|ref|YP_004044470.1|	-	2e-06	27.2	0.9	1.1e-05	24.8	0.9	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
MobB	PF03205.14	gi|313117487|ref|YP_004044470.1|	-	0.087	12.7	0.0	0.2	11.6	0.0	1.6	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
FTHFS	PF01268.19	gi|313117487|ref|YP_004044470.1|	-	0.11	10.7	0.3	0.15	10.2	0.3	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
CPBP	PF02517.16	gi|313117488|ref|YP_004044471.1|	-	4.2e-16	59.1	7.3	4.2e-16	59.1	7.3	2.6	3	1	0	3	3	3	1	CPBP	intramembrane	metalloprotease
Trp_oprn_chp	PF09534.10	gi|313117489|ref|YP_004044472.1|	-	0.0037	17.1	1.1	0.004	17.0	1.1	1.1	1	0	0	1	1	1	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
AC_N	PF16214.5	gi|313117489|ref|YP_004044472.1|	-	0.14	11.3	0.0	0.16	11.1	0.0	1.1	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
FixS	PF03597.15	gi|313117489|ref|YP_004044472.1|	-	5.2	6.9	6.2	6.4	6.6	0.5	2.3	2	0	0	2	2	2	0	Cytochrome	oxidase	maturation	protein	cbb3-type
Peripla_BP_2	PF01497.18	gi|313117491|ref|YP_004044474.1|	-	8.7e-18	64.7	0.0	1.5e-17	64.0	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|313117491|ref|YP_004044474.1|	-	0.00022	21.0	0.1	0.0004	20.1	0.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupin_5	PF06172.11	gi|313117491|ref|YP_004044474.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	Cupin	superfamily	(DUF985)
ABC2_membrane_2	PF12679.7	gi|313117492|ref|YP_004044475.1|	-	4.4e-21	75.4	8.5	8.5e-21	74.5	8.5	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|313117492|ref|YP_004044475.1|	-	4.5e-07	29.6	4.5	4.5e-07	29.6	4.5	1.5	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|313117492|ref|YP_004044475.1|	-	0.0005	19.3	12.3	0.00058	19.1	12.3	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
DUF2561	PF10812.8	gi|313117492|ref|YP_004044475.1|	-	0.029	14.4	0.4	0.029	14.4	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2561)
PQQ_2	PF13360.6	gi|313117493|ref|YP_004044476.1|	-	1.1e-28	100.5	6.7	1.1e-16	61.2	4.1	3.0	1	1	0	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|313117493|ref|YP_004044476.1|	-	3e-21	75.3	15.9	0.00082	19.8	0.3	7.7	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|313117493|ref|YP_004044476.1|	-	2.9e-17	61.7	1.0	0.018	14.9	0.0	6.4	6	0	0	6	6	6	4	PQQ	enzyme	repeat
EFhand_Ca_insen	PF08726.10	gi|313117493|ref|YP_004044476.1|	-	0.055	13.6	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Ca2+	insensitive	EF	hand
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014735.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014735.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014735.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014735.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:34:36 2019
# [ok]