# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF354 PF04007.7 gi|313122370|ref|YP_004038257.1| - 1.3e-61 208.3 0.0 1.6e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|313122370|ref|YP_004038257.1| - 0.047 12.4 0.0 0.074 11.8 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Velvet PF11754.3 gi|313122371|ref|YP_004038258.1| - 0.044 13.3 0.1 0.056 13.0 0.1 1.2 1 0 0 1 1 1 0 Velvet factor GFO_IDH_MocA PF01408.17 gi|313122372|ref|YP_004038259.1| - 1.2e-24 87.0 0.1 2.1e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|313122372|ref|YP_004038259.1| - 0.0065 16.6 0.2 0.014 15.5 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.12 gi|313122372|ref|YP_004038259.1| - 0.019 15.3 0.0 0.054 13.9 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.19 gi|313122373|ref|YP_004038260.1| - 5e-17 61.8 1.1 1.6e-08 34.1 0.1 2.5 3 0 0 3 3 3 2 Xylose isomerase-like TIM barrel Epimerase PF01370.16 gi|313122373|ref|YP_004038260.1| - 0.076 12.4 0.2 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family UxuA PF03786.8 gi|313122373|ref|YP_004038260.1| - 0.19 10.2 0.0 0.3 9.6 0.0 1.2 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) FG-GAP PF01839.18 gi|313122374|ref|YP_004038261.1| - 1.7e-26 91.2 16.2 0.0023 17.5 0.0 7.4 7 0 0 7 7 7 6 FG-GAP repeat VCBS PF13517.1 gi|313122374|ref|YP_004038261.1| - 5.9e-26 90.6 23.6 5.1e-11 42.7 0.4 5.8 4 2 2 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.3 gi|313122374|ref|YP_004038261.1| - 1.3e-07 31.2 13.8 1.6 8.1 0.0 6.3 4 1 3 7 7 7 4 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.1 gi|313122374|ref|YP_004038261.1| - 0.021 14.6 2.1 8 6.2 0.0 4.2 5 1 1 6 6 6 0 Ciliary BBSome complex subunit 2, middle region EF-hand_5 PF13202.1 gi|313122374|ref|YP_004038261.1| - 0.065 12.5 16.3 1.5 8.3 0.5 5.4 5 0 0 5 5 5 0 EF hand EF-hand_1 PF00036.27 gi|313122374|ref|YP_004038261.1| - 1.2 8.5 16.1 6 6.4 0.1 5.6 6 0 0 6 6 6 0 EF hand Methyltransf_21 PF05050.7 gi|313122375|ref|YP_004038262.1| - 3.8e-22 78.9 0.0 5.1e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|313122375|ref|YP_004038262.1| - 2.3e-07 30.2 0.0 1.6e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|313122375|ref|YP_004038262.1| - 3.3e-07 30.8 0.0 6.3e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|313122375|ref|YP_004038262.1| - 2.9e-06 27.0 0.0 4.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|313122375|ref|YP_004038262.1| - 0.012 15.6 0.1 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|313122375|ref|YP_004038262.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Polysacc_deac_1 PF01522.16 gi|313122376|ref|YP_004038263.1| - 5.8e-29 100.2 0.0 1.1e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF693 PF05113.8 gi|313122376|ref|YP_004038263.1| - 0.036 12.9 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF693) Glycos_transf_2 PF00535.21 gi|313122377|ref|YP_004038264.1| - 3.2e-15 56.2 0.3 5.6e-15 55.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|313122377|ref|YP_004038264.1| - 5.5e-12 45.3 1.4 8.8e-06 25.0 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|313122377|ref|YP_004038264.1| - 3e-11 43.5 0.6 9.1e-11 41.9 0.4 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|313122377|ref|YP_004038264.1| - 0.0079 15.9 0.9 0.048 13.3 0.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|313122377|ref|YP_004038264.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Aldolase_2 PF10120.4 gi|313122377|ref|YP_004038264.1| - 0.017 14.5 0.0 0.04 13.2 0.0 1.6 1 0 0 1 1 1 0 Putative aldolase PhoD PF09423.5 gi|313122378|ref|YP_004038265.1| - 0.064 11.8 0.0 0.071 11.6 0.0 1.0 1 0 0 1 1 1 0 PhoD-like phosphatase Glycos_transf_1 PF00534.15 gi|313122380|ref|YP_004038267.1| - 3.6e-25 88.3 0.0 5.5e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313122380|ref|YP_004038267.1| - 1.3e-15 57.7 0.0 2.9e-15 56.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313122380|ref|YP_004038267.1| - 2.5e-15 56.9 3.6 5e-15 56.0 2.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|313122380|ref|YP_004038267.1| - 2.2e-11 43.8 0.0 1.5e-09 37.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313122380|ref|YP_004038267.1| - 1.6e-08 34.5 0.7 2.7e-08 33.7 0.5 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|313122380|ref|YP_004038267.1| - 2.6e-05 24.0 0.0 4.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like LigB PF02900.13 gi|313122380|ref|YP_004038267.1| - 0.045 12.7 0.0 2.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Phosphodiest PF01663.17 gi|313122381|ref|YP_004038268.1| - 1.4e-49 169.4 0.0 4e-49 167.8 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|313122381|ref|YP_004038268.1| - 0.012 15.0 0.0 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 Metalloenzyme superfamily AF0941-like PF14591.1 gi|313122381|ref|YP_004038268.1| - 0.12 12.4 0.1 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 AF0941-like Pectate_lyase_3 PF12708.2 gi|313122382|ref|YP_004038269.1| - 2.2e-09 37.7 1.9 3.8e-05 23.9 0.1 3.0 1 1 2 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|313122382|ref|YP_004038269.1| - 6.1e-09 35.8 8.6 0.00034 20.3 0.1 3.1 1 1 0 2 2 2 2 Right handed beta helix region Beta_helix PF13229.1 gi|313122383|ref|YP_004038270.1| - 0.017 14.8 37.7 0.19 11.4 15.2 4.7 2 2 2 4 4 4 0 Right handed beta helix region DUF1202 PF06717.6 gi|313122383|ref|YP_004038270.1| - 0.031 13.5 0.1 0.26 10.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1202) TAT_signal PF10518.4 gi|313122383|ref|YP_004038270.1| - 0.56 10.3 10.7 1.6 8.9 7.4 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sulfatase PF00884.18 gi|313122385|ref|YP_004038272.1| - 5.2e-43 147.4 0.2 6.6e-43 147.0 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|313122385|ref|YP_004038272.1| - 0.18 11.1 0.4 0.33 10.3 0.2 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|313122386|ref|YP_004038273.1| - 3.2e-36 124.5 0.0 4.8e-36 123.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313122386|ref|YP_004038273.1| - 3.3e-22 79.4 0.8 5.1e-22 78.7 0.5 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|313122386|ref|YP_004038273.1| - 4.8e-08 32.4 0.0 5.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_11 PF13414.1 gi|313122386|ref|YP_004038273.1| - 0.00036 20.1 0.0 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 TPR repeat TPR_16 PF13432.1 gi|313122386|ref|YP_004038273.1| - 0.025 15.2 0.9 0.06 14.0 0.6 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|313122386|ref|YP_004038273.1| - 0.062 13.9 0.6 0.26 12.0 0.3 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|313122386|ref|YP_004038273.1| - 0.066 13.1 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat UPF0167 PF03691.9 gi|313122386|ref|YP_004038273.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) Polysacc_synt PF01943.12 gi|313122387|ref|YP_004038274.1| - 1.8e-32 112.7 9.0 1.8e-32 112.7 6.2 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|313122387|ref|YP_004038274.1| - 1.7e-17 63.7 12.2 1.7e-17 63.7 8.5 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|313122387|ref|YP_004038274.1| - 2.4e-15 56.5 13.6 2.4e-15 56.5 9.4 3.4 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Sulfatase PF00884.18 gi|313122388|ref|YP_004038275.1| - 1.4e-34 119.7 0.5 1.8e-34 119.3 0.4 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313122388|ref|YP_004038275.1| - 2.2e-05 23.9 0.3 0.016 14.5 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAD_2 PF13419.1 gi|313122389|ref|YP_004038276.1| - 2.1e-25 89.9 0.0 2.5e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313122389|ref|YP_004038276.1| - 5.9e-09 35.5 0.0 1.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313122389|ref|YP_004038276.1| - 2.2e-08 34.7 2.6 7.6e-05 23.2 0.3 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313122389|ref|YP_004038276.1| - 0.0028 17.8 0.1 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.21 gi|313122390|ref|YP_004038277.1| - 4.2e-22 78.6 0.0 2.5e-21 76.0 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313122390|ref|YP_004038277.1| - 1.1e-09 38.4 0.7 3.1e-09 36.9 0.5 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF4282 PF14110.1 gi|313122390|ref|YP_004038277.1| - 0.024 14.8 0.1 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Amidohydro_2 PF04909.9 gi|313122391|ref|YP_004038278.1| - 1.6e-52 178.7 0.5 2.3e-52 178.2 0.3 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|313122391|ref|YP_004038278.1| - 0.0011 18.2 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 TatD related DNase ECH PF00378.15 gi|313122392|ref|YP_004038279.1| - 5e-59 199.3 1.0 5.6e-59 199.2 0.7 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|313122392|ref|YP_004038279.1| - 0.055 13.6 0.3 0.85 9.7 0.1 2.2 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region HTH_10 PF04967.7 gi|313122393|ref|YP_004038280.1| - 7.9e-19 66.9 0.0 1.4e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313122393|ref|YP_004038280.1| - 0.0087 15.4 0.0 0.026 13.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122393|ref|YP_004038280.1| - 0.018 14.6 0.4 0.066 12.7 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PaaA_PaaC PF05138.7 gi|313122394|ref|YP_004038281.1| - 9.1e-74 247.7 0.8 1.3e-73 247.1 0.5 1.2 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.6 gi|313122395|ref|YP_004038282.1| - 7.5e-28 96.5 0.5 8.7e-28 96.3 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.7 gi|313122396|ref|YP_004038283.1| - 2.5e-59 200.4 0.8 3.4e-59 199.9 0.6 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|313122396|ref|YP_004038283.1| - 9e-05 22.0 0.2 0.00019 20.9 0.1 1.6 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.12 gi|313122396|ref|YP_004038283.1| - 0.016 15.5 1.4 0.41 10.9 0.1 3.1 2 1 1 3 3 3 0 Rubrerythrin HEAT_2 PF13646.1 gi|313122396|ref|YP_004038283.1| - 0.058 13.6 0.3 2.4 8.4 0.0 2.7 2 0 0 2 2 2 0 HEAT repeats PerC PF06069.6 gi|313122396|ref|YP_004038283.1| - 0.075 13.0 0.6 0.38 10.8 0.2 2.3 2 1 1 3 3 3 0 PerC transcriptional activator DUF59 PF01883.14 gi|313122397|ref|YP_004038284.1| - 6.4e-19 67.7 0.2 8.4e-19 67.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 Zn-ribbon_8 PF09723.5 gi|313122398|ref|YP_004038285.1| - 0.00055 19.8 4.3 0.038 13.9 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|313122398|ref|YP_004038285.1| - 0.019 14.9 2.5 0.024 14.6 1.7 1.1 1 0 0 1 1 1 0 DnaJ central domain Toxin_16 PF07945.6 gi|313122398|ref|YP_004038285.1| - 0.02 14.5 1.4 0.02 14.5 1.0 1.5 2 0 0 2 2 1 0 Janus-atracotoxin Lar_restr_allev PF14354.1 gi|313122398|ref|YP_004038285.1| - 0.038 14.3 4.9 0.05 13.9 3.4 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-LITAF-like PF10601.4 gi|313122398|ref|YP_004038285.1| - 0.088 12.6 0.8 5.1 7.0 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|313122398|ref|YP_004038285.1| - 0.18 11.1 6.2 2 7.8 4.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|313122398|ref|YP_004038285.1| - 0.26 11.0 3.7 0.62 9.8 2.6 1.6 1 1 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|313122398|ref|YP_004038285.1| - 0.36 10.5 2.1 0.45 10.2 1.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|313122398|ref|YP_004038285.1| - 0.41 10.6 0.2 0.41 10.6 0.1 2.2 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|313122398|ref|YP_004038285.1| - 0.51 10.1 3.8 0.71 9.7 2.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|313122398|ref|YP_004038285.1| - 0.66 9.8 5.6 7.6 6.4 3.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|313122398|ref|YP_004038285.1| - 1.1 9.1 4.5 0.88 9.4 0.3 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C3HC4_3 PF13920.1 gi|313122398|ref|YP_004038285.1| - 1.4 8.6 4.9 15 5.3 0.1 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2 PF00096.21 gi|313122398|ref|YP_004038285.1| - 1.8 9.0 5.4 12 6.4 0.6 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|313122398|ref|YP_004038285.1| - 3.9 6.8 7.8 10 5.4 5.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|313122398|ref|YP_004038285.1| - 5 7.2 8.7 26 5.0 6.0 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Aldedh PF00171.17 gi|313122399|ref|YP_004038286.1| - 1.2e-179 597.4 0.0 1.4e-179 597.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.9 gi|313122399|ref|YP_004038286.1| - 0.05 13.8 0.0 0.19 11.9 0.0 2.0 1 1 0 1 1 1 0 YCII-related domain LuxC PF05893.9 gi|313122399|ref|YP_004038286.1| - 0.23 10.1 0.0 0.39 9.3 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) 4HBT PF03061.17 gi|313122400|ref|YP_004038287.1| - 1.6e-14 53.8 0.2 2.4e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|313122400|ref|YP_004038287.1| - 6.3e-08 32.6 0.0 8.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|313122400|ref|YP_004038287.1| - 0.00068 19.4 0.4 0.00078 19.2 0.3 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily AMP-binding_C_2 PF14535.1 gi|313122401|ref|YP_004038288.1| - 5.9e-24 83.9 0.0 1.4e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|313122401|ref|YP_004038288.1| - 2.7e-20 72.1 0.4 3.9e-20 71.6 0.3 1.2 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|313122401|ref|YP_004038288.1| - 0.0012 17.5 0.0 0.003 16.3 0.0 1.5 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE ABC_tran PF00005.22 gi|313122402|ref|YP_004038289.1| - 5.3e-34 117.4 0.0 7.4e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122402|ref|YP_004038289.1| - 4.8e-09 36.5 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|313122402|ref|YP_004038289.1| - 0.0011 18.4 0.1 0.0022 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122402|ref|YP_004038289.1| - 0.0064 16.0 0.1 0.013 14.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313122402|ref|YP_004038289.1| - 0.0089 16.0 2.4 0.18 11.7 1.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122402|ref|YP_004038289.1| - 0.015 15.4 1.2 0.1 12.7 0.8 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313122402|ref|YP_004038289.1| - 0.033 13.0 0.1 0.052 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.14 gi|313122402|ref|YP_004038289.1| - 0.033 13.4 0.1 4.6 6.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|313122402|ref|YP_004038289.1| - 0.037 13.9 0.2 0.33 10.9 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BCA_ABC_TP_C PF12399.3 gi|313122402|ref|YP_004038289.1| - 0.041 13.5 0.1 0.11 12.2 0.1 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|313122402|ref|YP_004038289.1| - 0.046 14.0 0.0 0.091 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313122402|ref|YP_004038289.1| - 0.046 13.3 0.4 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.17 gi|313122402|ref|YP_004038289.1| - 0.079 12.3 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|313122402|ref|YP_004038289.1| - 0.095 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313122402|ref|YP_004038289.1| - 0.13 12.5 0.1 0.36 11.0 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|313122403|ref|YP_004038290.1| - 1.5e-28 99.8 0.0 1.9e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|313122403|ref|YP_004038290.1| - 3.8e-08 32.8 0.0 8.7e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_30 PF13604.1 gi|313122403|ref|YP_004038290.1| - 0.00015 21.3 0.0 0.00024 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|313122403|ref|YP_004038290.1| - 0.00018 21.5 0.1 0.044 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|313122403|ref|YP_004038290.1| - 0.0003 21.1 0.0 0.00033 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122403|ref|YP_004038290.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|313122403|ref|YP_004038290.1| - 0.0017 17.5 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin SbcCD_C PF13558.1 gi|313122403|ref|YP_004038290.1| - 0.02 14.8 0.1 0.037 13.9 0.1 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|313122403|ref|YP_004038290.1| - 0.075 13.0 0.1 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313122403|ref|YP_004038290.1| - 0.084 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|313122403|ref|YP_004038290.1| - 0.097 12.1 0.1 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|313122403|ref|YP_004038290.1| - 0.13 11.4 0.1 0.27 10.4 0.1 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|313122403|ref|YP_004038290.1| - 0.18 10.2 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|313122404|ref|YP_004038291.1| - 4.4e-80 268.4 86.7 9.6e-47 159.1 28.0 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|313122405|ref|YP_004038292.1| - 2.3e-70 237.6 4.6 3e-70 237.2 3.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|313122405|ref|YP_004038292.1| - 2e-40 138.6 0.3 2.4e-40 138.3 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|313122405|ref|YP_004038292.1| - 2.8e-22 78.9 0.8 3.9e-22 78.5 0.6 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.8 gi|313122405|ref|YP_004038292.1| - 0.0039 16.6 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family MaoC_dehydratas PF01575.14 gi|313122406|ref|YP_004038293.1| - 1.5e-17 63.1 0.1 1.9e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313122406|ref|YP_004038293.1| - 0.0024 17.6 0.3 0.0061 16.3 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|313122407|ref|YP_004038294.1| - 2.4e-14 53.2 1.3 4.3e-14 52.3 0.9 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|313122407|ref|YP_004038294.1| - 2e-06 27.8 0.0 2.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.1 gi|313122407|ref|YP_004038294.1| - 0.0088 15.2 0.1 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase AMP-binding_C_2 PF14535.1 gi|313122408|ref|YP_004038295.1| - 6.5e-23 80.5 0.0 1.8e-22 79.2 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|313122408|ref|YP_004038295.1| - 8.7e-21 73.7 0.0 1.3e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|313122408|ref|YP_004038295.1| - 2.4e-05 23.2 0.0 0.00032 19.4 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|313122408|ref|YP_004038295.1| - 0.022 13.3 0.0 0.35 9.3 0.0 2.6 3 0 0 3 3 3 0 GH3 auxin-responsive promoter 3HCDH_N PF02737.13 gi|313122409|ref|YP_004038296.1| - 6e-64 215.0 2.8 9.2e-64 214.4 1.9 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|313122409|ref|YP_004038296.1| - 3.9e-32 110.5 0.3 1.6e-31 108.5 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|313122409|ref|YP_004038296.1| - 1.8e-08 34.3 0.0 3e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313122409|ref|YP_004038296.1| - 5.8e-05 22.9 3.7 0.00014 21.6 2.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|313122409|ref|YP_004038296.1| - 8e-05 22.0 0.2 0.00013 21.4 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|313122409|ref|YP_004038296.1| - 0.00011 22.5 2.3 0.01 16.2 1.6 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|313122409|ref|YP_004038296.1| - 0.12 12.2 0.3 0.37 10.6 0.2 1.7 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ECH PF00378.15 gi|313122410|ref|YP_004038297.1| - 7.3e-62 208.6 0.4 8.9e-62 208.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|313122410|ref|YP_004038297.1| - 3.4e-05 23.9 0.1 0.0003 20.8 0.0 2.1 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region DUF4248 PF14053.1 gi|313122410|ref|YP_004038297.1| - 0.07 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) NTP_transf_5 PF14907.1 gi|313122410|ref|YP_004038297.1| - 0.073 12.3 0.2 0.64 9.3 0.1 2.0 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase RelB_N PF12910.2 gi|313122410|ref|YP_004038297.1| - 0.39 10.1 3.9 0.63 9.4 0.1 3.0 3 0 0 3 3 3 0 Antitoxin of toxin-antitoxin stability system N-terminal EthD PF07110.6 gi|313122412|ref|YP_004038299.1| - 6.2e-14 52.7 1.9 1.6e-13 51.4 1.3 1.6 1 1 0 1 1 1 1 EthD domain Dabb PF07876.7 gi|313122412|ref|YP_004038299.1| - 0.0012 19.2 0.1 0.0016 18.8 0.1 1.2 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain DUF3066 PF11266.3 gi|313122412|ref|YP_004038299.1| - 0.11 12.2 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3066) HD PF01966.17 gi|313122414|ref|YP_004038301.1| - 1.7e-09 37.7 0.0 2.8e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 HD domain zinc-ribbons_6 PF07191.7 gi|313122416|ref|YP_004038303.1| - 0.0046 16.7 0.6 0.0074 16.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.2 gi|313122416|ref|YP_004038303.1| - 0.028 14.2 1.6 0.073 12.9 1.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|313122416|ref|YP_004038303.1| - 0.075 12.3 3.8 1.9 7.8 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PADR1 PF08063.7 gi|313122416|ref|YP_004038303.1| - 0.11 11.9 3.2 5.2 6.5 0.4 2.2 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.1 gi|313122416|ref|YP_004038303.1| - 0.11 11.6 2.2 4.9 6.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313122416|ref|YP_004038303.1| - 0.12 12.3 3.9 5 7.1 0.4 2.5 2 1 0 2 2 2 0 Zinc ribbon domain DUF164 PF02591.10 gi|313122416|ref|YP_004038303.1| - 0.15 11.9 1.2 4.8 7.0 0.2 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|313122416|ref|YP_004038303.1| - 0.15 11.5 3.8 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|313122416|ref|YP_004038303.1| - 0.2 11.3 4.1 6.3 6.5 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|313122416|ref|YP_004038303.1| - 0.49 9.9 3.1 15 5.2 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|313122416|ref|YP_004038303.1| - 0.91 8.9 3.1 7.9 5.8 0.5 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Opy2 PF09463.5 gi|313122416|ref|YP_004038303.1| - 1.3 9.1 6.3 6.9 6.8 0.2 2.3 2 0 0 2 2 2 0 Opy2 protein RRN7 PF11781.3 gi|313122416|ref|YP_004038303.1| - 1.4 8.4 5.5 8.9 5.9 0.8 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|313122416|ref|YP_004038303.1| - 8.8 6.1 9.4 2.1 8.1 0.7 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|313122416|ref|YP_004038303.1| - 9.5 6.3 7.0 11 6.1 0.1 2.4 2 1 0 2 2 2 0 zinc-finger NTP_transferase PF00483.18 gi|313122418|ref|YP_004038305.1| - 8.6e-42 143.1 0.0 1.3e-41 142.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122418|ref|YP_004038305.1| - 5.5e-15 55.8 0.3 1.1e-14 54.8 0.2 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313122418|ref|YP_004038305.1| - 7e-13 47.4 10.5 0.0027 17.1 0.1 4.8 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|313122418|ref|YP_004038305.1| - 3e-07 30.1 0.1 5.6e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|313122418|ref|YP_004038305.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Hexapep_2 PF14602.1 gi|313122418|ref|YP_004038305.1| - 1 8.9 12.6 4.6 6.8 0.2 4.7 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase HTH_20 PF12840.2 gi|313122419|ref|YP_004038306.1| - 2.6e-09 36.7 0.0 4.1e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313122419|ref|YP_004038306.1| - 7.7e-09 35.0 0.0 1.5e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313122419|ref|YP_004038306.1| - 4.1e-07 29.5 0.0 7.3e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313122419|ref|YP_004038306.1| - 9.3e-07 28.4 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313122419|ref|YP_004038306.1| - 5e-06 26.0 0.0 8.6e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313122419|ref|YP_004038306.1| - 3.3e-05 23.4 0.0 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|313122419|ref|YP_004038306.1| - 4.5e-05 22.8 0.0 8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313122419|ref|YP_004038306.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313122419|ref|YP_004038306.1| - 0.00015 21.0 0.0 0.00025 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122419|ref|YP_004038306.1| - 0.00017 21.0 0.3 0.00042 19.7 0.2 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|313122419|ref|YP_004038306.1| - 0.0014 18.0 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|313122419|ref|YP_004038306.1| - 0.0026 17.8 0.0 0.0054 16.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|313122419|ref|YP_004038306.1| - 0.0033 17.0 0.0 0.0062 16.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain FUR PF01475.14 gi|313122419|ref|YP_004038306.1| - 0.0039 17.1 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_28 PF13518.1 gi|313122419|ref|YP_004038306.1| - 0.0052 16.7 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|313122419|ref|YP_004038306.1| - 0.0076 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|313122419|ref|YP_004038306.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|313122419|ref|YP_004038306.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|313122419|ref|YP_004038306.1| - 0.014 15.3 0.0 0.034 14.1 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Replic_Relax PF13814.1 gi|313122419|ref|YP_004038306.1| - 0.014 15.2 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF4423 PF14394.1 gi|313122419|ref|YP_004038306.1| - 0.019 14.5 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Mga PF05043.8 gi|313122419|ref|YP_004038306.1| - 0.027 14.7 0.0 0.067 13.4 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_38 PF13936.1 gi|313122419|ref|YP_004038306.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|313122419|ref|YP_004038306.1| - 0.042 13.4 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family B-block_TFIIIC PF04182.7 gi|313122419|ref|YP_004038306.1| - 0.044 13.6 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_rep_org_N PF09681.5 gi|313122419|ref|YP_004038306.1| - 0.047 13.2 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.1 gi|313122419|ref|YP_004038306.1| - 0.051 13.7 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|313122419|ref|YP_004038306.1| - 0.055 12.6 0.0 0.089 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|313122419|ref|YP_004038306.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|313122419|ref|YP_004038306.1| - 0.13 12.0 0.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix HTH_17 PF12728.2 gi|313122419|ref|YP_004038306.1| - 0.14 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SIS PF01380.17 gi|313122420|ref|YP_004038307.1| - 3.6e-53 178.6 0.8 1.9e-27 95.4 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|313122420|ref|YP_004038307.1| - 5.9e-24 84.5 0.0 1.6e-23 83.0 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|313122420|ref|YP_004038307.1| - 1.7e-21 76.3 0.0 2.3e-15 56.1 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|313122420|ref|YP_004038307.1| - 1.7e-19 69.7 0.0 7.6e-19 67.6 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|313122420|ref|YP_004038307.1| - 1e-06 27.6 0.0 1.6e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|313122420|ref|YP_004038307.1| - 0.00031 20.4 2.2 0.055 13.1 0.0 3.5 4 0 0 4 4 4 1 SIS domain DUF4170 PF13773.1 gi|313122420|ref|YP_004038307.1| - 0.094 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) NTP_transferase PF00483.18 gi|313122421|ref|YP_004038308.1| - 1.1e-33 116.6 0.0 1.3e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122421|ref|YP_004038308.1| - 4.5e-18 65.8 0.1 7.4e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313122421|ref|YP_004038308.1| - 9.2e-15 53.3 18.6 3.6e-06 26.2 0.6 5.0 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313122421|ref|YP_004038308.1| - 2e-09 36.8 21.2 2.5e-07 30.1 1.2 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|313122421|ref|YP_004038308.1| - 1.1e-05 25.1 0.1 2.1e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_20 PF12840.2 gi|313122423|ref|YP_004038310.1| - 6.8e-05 22.5 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|313122423|ref|YP_004038310.1| - 0.0006 19.4 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family Stn1_C PF12659.2 gi|313122423|ref|YP_004038310.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH PadR PF03551.9 gi|313122424|ref|YP_004038311.1| - 6.3e-13 48.2 0.2 7.7e-13 48.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.6 gi|313122424|ref|YP_004038311.1| - 0.00064 19.3 0.0 0.00095 18.7 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|313122424|ref|YP_004038311.1| - 0.0017 18.3 0.0 0.0025 17.7 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|313122424|ref|YP_004038311.1| - 0.02 14.5 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.1 gi|313122424|ref|YP_004038311.1| - 0.02 15.2 0.0 0.033 14.5 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|313122424|ref|YP_004038311.1| - 0.036 13.8 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix FUR PF01475.14 gi|313122424|ref|YP_004038311.1| - 0.038 13.9 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Epimerase_2 PF02350.14 gi|313122426|ref|YP_004038313.1| - 2.3e-108 362.0 0.0 2.8e-108 361.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Lipase_GDSL_2 PF13472.1 gi|313122426|ref|YP_004038313.1| - 0.012 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Glyco_trans_4_2 PF13477.1 gi|313122426|ref|YP_004038313.1| - 0.077 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.7 gi|313122426|ref|YP_004038313.1| - 0.16 10.8 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) UDPG_MGDP_dh_N PF03721.9 gi|313122427|ref|YP_004038314.1| - 8.8e-51 171.9 0.0 1.7e-50 171.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|313122427|ref|YP_004038314.1| - 2.3e-24 85.4 0.0 4e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|313122427|ref|YP_004038314.1| - 1.3e-20 73.4 1.0 5.2e-19 68.3 0.0 3.3 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|313122427|ref|YP_004038314.1| - 2.3e-06 27.9 0.3 0.45 10.9 0.0 3.8 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|313122427|ref|YP_004038314.1| - 5e-06 26.3 0.0 4.9e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313122427|ref|YP_004038314.1| - 9.4e-06 25.5 0.0 2.6e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|313122427|ref|YP_004038314.1| - 4.3e-05 23.4 0.3 0.0013 18.7 0.0 3.0 2 1 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|313122427|ref|YP_004038314.1| - 9.9e-05 21.5 0.0 0.024 13.8 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|313122427|ref|YP_004038314.1| - 0.0002 21.0 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313122427|ref|YP_004038314.1| - 0.00071 19.0 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|313122427|ref|YP_004038314.1| - 0.014 15.9 0.1 0.23 12.0 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain NAD_binding_10 PF13460.1 gi|313122427|ref|YP_004038314.1| - 0.029 14.3 0.4 8.4 6.3 0.1 2.6 2 1 0 2 2 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|313122427|ref|YP_004038314.1| - 0.033 13.7 0.0 0.13 11.8 0.0 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transferase PF00483.18 gi|313122429|ref|YP_004038316.1| - 3.9e-40 137.7 0.0 4.7e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122429|ref|YP_004038316.1| - 2.5e-17 63.4 0.0 3.1e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|313122429|ref|YP_004038316.1| - 7.4e-08 32.1 0.0 2.7e-07 30.3 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|313122429|ref|YP_004038316.1| - 0.0059 16.3 0.1 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PGM_PMM_I PF02878.11 gi|313122430|ref|YP_004038317.1| - 9.6e-32 109.3 0.0 1.7e-31 108.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|313122430|ref|YP_004038317.1| - 4e-20 71.9 0.0 7.1e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|313122430|ref|YP_004038317.1| - 6.8e-17 61.6 0.1 2e-16 60.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|313122430|ref|YP_004038317.1| - 6.8e-14 51.6 0.1 1.6e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF457 PF04307.9 gi|313122432|ref|YP_004038319.1| - 2.4e-11 43.2 7.7 3.3e-11 42.7 5.4 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|313122432|ref|YP_004038319.1| - 0.0056 16.3 0.0 0.0072 15.9 0.0 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PsbX PF06596.6 gi|313122432|ref|YP_004038319.1| - 0.024 14.2 3.2 0.024 14.2 2.2 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) Sulfatase PF00884.18 gi|313122433|ref|YP_004038320.1| - 1e-21 77.4 0.3 1.4e-21 77.0 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Glycos_transf_1 PF00534.15 gi|313122434|ref|YP_004038321.1| - 1.2e-25 89.9 0.0 2.1e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313122434|ref|YP_004038321.1| - 1.5e-24 86.6 0.1 6e-24 84.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313122434|ref|YP_004038321.1| - 4.2e-18 65.9 5.9 4.2e-18 65.9 4.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|313122434|ref|YP_004038321.1| - 5.9e-10 39.2 0.0 2e-09 37.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313122434|ref|YP_004038321.1| - 1.2e-08 34.8 1.3 7.8e-08 32.2 0.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF1697 PF08002.6 gi|313122434|ref|YP_004038321.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) Methyltransf_11 PF08241.7 gi|313122435|ref|YP_004038322.1| - 4.4e-07 30.2 0.0 1e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Prenyltrans_1 PF13243.1 gi|313122435|ref|YP_004038322.1| - 0.00038 20.4 3.9 0.67 9.9 0.1 3.6 4 1 0 4 4 4 2 Prenyltransferase-like Glyco_hydro_88 PF07470.8 gi|313122435|ref|YP_004038322.1| - 0.023 13.7 3.9 1.3 7.9 0.1 2.7 2 1 0 3 3 3 0 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|313122435|ref|YP_004038322.1| - 0.039 14.3 0.6 0.35 11.2 0.0 2.6 3 0 0 3 3 3 0 Prenyltransferase-like Sulfatase PF00884.18 gi|313122436|ref|YP_004038323.1| - 6e-38 130.7 3.1 7.4e-38 130.4 0.3 1.9 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.17 gi|313122436|ref|YP_004038323.1| - 2.2e-06 27.2 0.3 0.00016 21.1 0.2 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2236 PF09995.4 gi|313122436|ref|YP_004038323.1| - 7 5.8 6.2 6.7 5.9 0.2 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2236) GSDH PF07995.6 gi|313122437|ref|YP_004038324.1| - 3.2e-52 177.6 0.0 5.3e-52 176.9 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PKD PF00801.15 gi|313122437|ref|YP_004038324.1| - 1.4e-14 53.5 6.0 1.4e-14 53.5 4.1 6.3 6 0 0 6 6 6 3 PKD domain GIDE PF12483.3 gi|313122439|ref|YP_004038326.1| - 0.00029 20.2 0.0 0.00092 18.6 0.0 1.7 2 0 0 2 2 2 1 E3 Ubiquitin ligase Cdc6_C PF09079.6 gi|313122440|ref|YP_004038327.1| - 8.6e-20 70.2 0.0 2e-19 69.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|313122440|ref|YP_004038327.1| - 6.2e-12 45.8 0.1 4e-11 43.2 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122440|ref|YP_004038327.1| - 1.2e-11 44.9 0.0 2.8e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313122440|ref|YP_004038327.1| - 3.4e-05 23.5 0.0 5.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|313122440|ref|YP_004038327.1| - 7.2e-05 21.7 0.0 0.00011 21.2 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|313122440|ref|YP_004038327.1| - 8.2e-05 21.6 0.0 0.00018 20.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA PF00004.24 gi|313122440|ref|YP_004038327.1| - 0.00031 20.9 0.0 0.00084 19.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|313122440|ref|YP_004038327.1| - 0.0017 18.1 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase DEAD PF00270.24 gi|313122440|ref|YP_004038327.1| - 0.004 16.6 0.5 0.27 10.7 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|313122440|ref|YP_004038327.1| - 0.013 14.9 0.0 0.041 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313122440|ref|YP_004038327.1| - 0.017 15.2 0.1 0.038 14.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|313122440|ref|YP_004038327.1| - 0.023 14.4 0.2 0.17 11.5 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|313122440|ref|YP_004038327.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_18 PF13238.1 gi|313122440|ref|YP_004038327.1| - 0.024 14.9 0.0 0.066 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|313122440|ref|YP_004038327.1| - 0.031 13.2 0.1 1.8 7.4 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain AAA_32 PF13654.1 gi|313122440|ref|YP_004038327.1| - 0.035 12.7 0.1 0.64 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|313122440|ref|YP_004038327.1| - 0.096 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Sigma54_activat PF00158.21 gi|313122440|ref|YP_004038327.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|313122440|ref|YP_004038327.1| - 0.15 11.6 0.7 0.26 10.8 0.5 1.5 1 1 0 1 1 1 0 AAA domain HTH_29 PF13551.1 gi|313122441|ref|YP_004038328.1| - 1.4e-23 83.1 0.0 2.2e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|313122441|ref|YP_004038328.1| - 5.8e-13 49.4 0.7 1e-12 48.6 0.5 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|313122441|ref|YP_004038328.1| - 5.1e-11 42.3 0.0 2.3e-10 40.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.1 gi|313122441|ref|YP_004038328.1| - 2.7e-08 33.2 0.2 9.4e-08 31.4 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn helix HTH_23 PF13384.1 gi|313122441|ref|YP_004038328.1| - 1.4e-07 30.9 0.0 3.4e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|313122441|ref|YP_004038328.1| - 2.9e-05 23.9 0.0 6.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Transposase HTH_psq PF05225.11 gi|313122441|ref|YP_004038328.1| - 0.00034 20.1 0.1 0.00088 18.7 0.0 1.8 1 1 1 2 2 2 1 helix-turn-helix, Psq domain MerR_1 PF13411.1 gi|313122441|ref|YP_004038328.1| - 0.0013 18.4 0.2 0.0041 16.8 0.1 1.8 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_7 PF02796.10 gi|313122441|ref|YP_004038328.1| - 0.0013 18.5 0.1 1.4 8.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase LZ_Tnp_IS481 PF13011.1 gi|313122441|ref|YP_004038328.1| - 0.0036 17.6 0.0 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_IS630 PF01710.11 gi|313122441|ref|YP_004038328.1| - 0.016 14.8 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Transposase Endonuc_subdom PF09062.5 gi|313122441|ref|YP_004038328.1| - 0.045 14.5 0.1 0.14 12.9 0.0 1.7 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain HTH_17 PF12728.2 gi|313122441|ref|YP_004038328.1| - 0.077 13.2 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|313122441|ref|YP_004038328.1| - 0.082 12.7 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313122441|ref|YP_004038328.1| - 0.11 11.7 0.0 0.75 9.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|313122441|ref|YP_004038328.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HBS1_N PF08938.5 gi|313122441|ref|YP_004038328.1| - 0.17 12.0 1.3 1.2 9.2 0.9 2.4 1 1 0 1 1 1 0 HBS1 N-terminus zf-HC2 PF13490.1 gi|313122441|ref|YP_004038328.1| - 0.74 9.8 2.6 0.88 9.5 0.2 2.4 2 0 0 2 2 2 0 Putative zinc-finger DUF1131 PF06572.7 gi|313122442|ref|YP_004038329.1| - 0.05 13.0 0.5 5.4 6.4 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1131) HypA PF01155.14 gi|313122442|ref|YP_004038329.1| - 0.065 12.9 0.2 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family LRV_FeS PF05484.6 gi|313122442|ref|YP_004038329.1| - 0.29 10.7 2.3 0.87 9.2 1.4 1.9 1 1 1 2 2 2 0 LRV protein FeS4 cluster AAA_23 PF13476.1 gi|313122443|ref|YP_004038330.1| - 3.1e-08 34.1 23.9 3.1e-08 34.1 16.6 4.8 2 2 0 2 2 1 1 AAA domain GAS PF13851.1 gi|313122443|ref|YP_004038330.1| - 4.2e-06 26.1 52.5 0.0078 15.4 13.1 4.3 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding AAA_13 PF13166.1 gi|313122443|ref|YP_004038330.1| - 1.9e-05 23.3 37.8 0.00017 20.2 9.7 2.5 2 1 0 2 2 2 2 AAA domain WEMBL PF05701.6 gi|313122443|ref|YP_004038330.1| - 3e-05 22.6 45.4 0.0054 15.2 11.9 2.1 2 0 0 2 2 2 2 Weak chloroplast movement under blue light Reo_sigmaC PF04582.7 gi|313122443|ref|YP_004038330.1| - 8.1e-05 21.9 13.0 0.00087 18.5 1.7 3.2 1 1 1 3 3 3 3 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|313122443|ref|YP_004038330.1| - 0.0002 21.5 32.5 0.22 11.8 0.2 6.9 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.1 gi|313122443|ref|YP_004038330.1| - 0.00021 19.1 52.4 0.0048 14.6 14.9 2.2 2 0 0 2 2 2 2 AAA domain Spc7 PF08317.6 gi|313122443|ref|YP_004038330.1| - 0.00034 19.3 60.1 0.043 12.4 12.0 4.5 2 2 1 4 4 4 4 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|313122443|ref|YP_004038330.1| - 0.00081 19.2 20.6 1 9.1 1.7 5.5 3 2 1 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|313122443|ref|YP_004038330.1| - 0.0016 18.3 17.2 0.0016 18.3 11.9 5.0 2 2 2 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HsbA PF12296.3 gi|313122443|ref|YP_004038330.1| - 0.002 17.9 2.4 0.016 15.0 0.1 2.9 3 0 0 3 3 2 1 Hydrophobic surface binding protein A IncA PF04156.9 gi|313122443|ref|YP_004038330.1| - 0.0028 17.2 80.1 0.0091 15.6 14.1 4.5 2 2 2 4 4 4 2 IncA protein COG2 PF06148.6 gi|313122443|ref|YP_004038330.1| - 0.0032 17.3 35.7 0.16 11.8 3.2 6.1 2 2 4 6 6 6 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.3 gi|313122443|ref|YP_004038330.1| - 0.0034 14.8 54.5 0.049 10.9 25.4 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) TBPIP PF07106.8 gi|313122443|ref|YP_004038330.1| - 0.004 16.7 51.4 0.021 14.4 1.2 5.0 3 2 1 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlxA PF14282.1 gi|313122443|ref|YP_004038330.1| - 0.0041 17.0 38.1 0.0059 16.5 0.0 5.3 2 2 2 5 5 5 2 FlxA-like protein BLOC1_2 PF10046.4 gi|313122443|ref|YP_004038330.1| - 0.0062 16.6 1.9 0.0062 16.6 1.3 6.8 3 3 3 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.16 gi|313122443|ref|YP_004038330.1| - 0.012 15.8 47.1 0.038 14.2 3.8 5.2 2 2 1 5 5 5 0 Spectrin repeat Laminin_II PF06009.7 gi|313122443|ref|YP_004038330.1| - 0.029 14.1 30.2 0.14 11.8 4.6 5.5 3 2 2 6 6 5 0 Laminin Domain II FliD_N PF02465.13 gi|313122443|ref|YP_004038330.1| - 0.031 14.6 16.2 1.1 9.6 0.0 6.0 4 2 3 7 7 6 0 Flagellar hook-associated protein 2 N-terminus Tropomyosin_1 PF12718.2 gi|313122443|ref|YP_004038330.1| - 0.042 13.7 81.2 1.9 8.3 21.2 4.8 2 2 2 4 4 4 0 Tropomyosin like Val_tRNA-synt_C PF10458.4 gi|313122443|ref|YP_004038330.1| - 0.064 13.3 0.1 0.064 13.3 0.1 7.3 5 2 3 8 8 7 0 Valyl tRNA synthetase tRNA binding arm Atg14 PF10186.4 gi|313122443|ref|YP_004038330.1| - 0.089 11.7 51.7 0.15 10.9 5.8 4.2 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|313122443|ref|YP_004038330.1| - 0.19 10.7 62.3 0.023 13.7 12.6 4.3 2 2 2 4 4 4 0 Autophagy protein Apg6 Seryl_tRNA_N PF02403.17 gi|313122443|ref|YP_004038330.1| - 0.2 11.7 57.4 0.56 10.2 3.2 5.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|313122443|ref|YP_004038330.1| - 0.21 11.5 66.5 0.98 9.3 14.1 6.3 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) DUF342 PF03961.8 gi|313122443|ref|YP_004038330.1| - 0.24 9.7 43.1 0.24 9.7 1.0 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF342) Fez1 PF06818.10 gi|313122443|ref|YP_004038330.1| - 0.27 11.2 57.1 11 5.9 13.7 3.5 1 1 2 3 3 3 0 Fez1 Flagellin_C PF00700.16 gi|313122443|ref|YP_004038330.1| - 0.83 9.8 16.3 0.14 12.3 0.6 5.1 3 1 1 5 5 5 0 Bacterial flagellin C-terminal helical region Fzo_mitofusin PF04799.8 gi|313122443|ref|YP_004038330.1| - 1.1 8.6 37.1 0.63 9.3 1.3 6.1 2 2 4 6 6 6 0 fzo-like conserved region DUF607 PF04678.8 gi|313122443|ref|YP_004038330.1| - 1.1 9.1 25.8 0.45 10.4 0.2 5.3 2 2 3 5 5 5 0 Protein of unknown function, DUF607 Syntaxin-6_N PF09177.6 gi|313122443|ref|YP_004038330.1| - 1.3 9.4 53.5 2.2 8.7 0.8 5.8 4 2 0 4 4 4 0 Syntaxin 6, N-terminal Myosin_tail_1 PF01576.14 gi|313122443|ref|YP_004038330.1| - 1.9 6.1 78.8 0.48 8.0 8.5 3.3 2 2 1 3 3 3 0 Myosin tail ATG16 PF08614.6 gi|313122443|ref|YP_004038330.1| - 2.4 7.9 63.7 0.13 12.0 9.5 5.2 2 2 1 4 4 4 0 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.7 gi|313122443|ref|YP_004038330.1| - 3.6 7.3 54.7 29 4.4 12.0 5.7 2 1 3 5 5 4 0 TPR/MLP1/MLP2-like protein DivIC PF04977.10 gi|313122443|ref|YP_004038330.1| - 4.5 6.8 73.5 3.2 7.3 8.1 8.5 2 2 6 8 8 8 0 Septum formation initiator Cytochrom_C_2 PF01322.15 gi|313122443|ref|YP_004038330.1| - 4.6 7.8 9.1 13 6.2 0.7 4.2 4 1 1 5 5 3 0 Cytochrome C' Phage_GP20 PF06810.6 gi|313122443|ref|YP_004038330.1| - 7.1 6.0 53.8 1.4 8.3 7.9 6.4 3 2 4 7 7 6 0 Phage minor structural protein GP20 MscS_porin PF12795.2 gi|313122443|ref|YP_004038330.1| - 7.8 5.7 54.1 0.55 9.5 7.2 4.1 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain Mnd1 PF03962.10 gi|313122443|ref|YP_004038330.1| - 8 6.0 59.4 2 8.0 2.7 5.8 2 2 2 4 4 4 0 Mnd1 family DUF869 PF05911.6 gi|313122443|ref|YP_004038330.1| - 9.4 4.3 53.5 0.71 8.0 15.6 3.0 1 1 0 3 3 3 0 Plant protein of unknown function (DUF869) Trypan_PARP PF05887.6 gi|313122444|ref|YP_004038331.1| - 0.00023 21.0 2.7 0.0008 19.2 1.9 1.9 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) DUF3244 PF11589.3 gi|313122444|ref|YP_004038331.1| - 0.0025 17.5 6.4 0.45 10.2 0.0 4.0 4 0 0 4 4 4 2 Domain of unknown function (DUF3244) Abhydrolase_6 PF12697.2 gi|313122447|ref|YP_004038334.1| - 6.7e-34 117.7 2.0 8.7e-34 117.3 1.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313122447|ref|YP_004038334.1| - 9.6e-20 71.1 0.0 2.1e-19 70.0 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313122447|ref|YP_004038334.1| - 2.2e-13 50.1 0.0 5.6e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|313122447|ref|YP_004038334.1| - 0.005 16.0 0.1 0.11 11.6 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family CbiA PF01656.18 gi|313122451|ref|YP_004038338.1| - 3e-30 105.0 0.0 3.8e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313122451|ref|YP_004038338.1| - 1e-10 41.7 0.0 2.8e-10 40.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|313122451|ref|YP_004038338.1| - 5.6e-08 32.1 0.3 2.9e-05 23.2 0.1 2.6 3 0 0 3 3 3 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|313122451|ref|YP_004038338.1| - 3.7e-06 26.1 0.1 0.00014 20.9 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|313122451|ref|YP_004038338.1| - 0.0023 17.1 0.0 0.0054 15.9 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|313122451|ref|YP_004038338.1| - 0.0041 17.9 0.3 0.013 16.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|313122451|ref|YP_004038338.1| - 0.0062 15.9 0.1 0.026 13.9 0.2 1.7 2 0 0 2 2 2 1 YhjQ protein VirC1 PF07015.6 gi|313122451|ref|YP_004038338.1| - 0.011 14.8 0.1 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MobB PF03205.9 gi|313122451|ref|YP_004038338.1| - 0.04 13.6 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313122451|ref|YP_004038338.1| - 0.044 13.1 0.1 0.1 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|313122451|ref|YP_004038338.1| - 0.052 12.9 0.1 0.093 12.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|313122451|ref|YP_004038338.1| - 0.053 13.8 0.4 0.2 11.9 0.0 2.2 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|313122451|ref|YP_004038338.1| - 0.064 13.0 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|313122451|ref|YP_004038338.1| - 0.11 11.8 0.0 0.39 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain KTI12 PF08433.5 gi|313122451|ref|YP_004038338.1| - 0.19 10.8 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Transglut_core PF01841.14 gi|313122452|ref|YP_004038339.1| - 1.9e-31 108.6 0.0 4.1e-31 107.5 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|313122452|ref|YP_004038339.1| - 1.8e-05 24.5 0.4 1.8e-05 24.5 0.3 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|313122452|ref|YP_004038339.1| - 0.0013 17.4 0.3 0.0021 16.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.1 gi|313122452|ref|YP_004038339.1| - 0.0088 15.8 0.0 0.029 14.1 0.0 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily HLH PF00010.21 gi|313122453|ref|YP_004038340.1| - 0.023 14.3 0.1 7 6.4 0.0 2.3 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain DUF2910 PF11139.3 gi|313122453|ref|YP_004038340.1| - 0.024 13.8 2.0 0.036 13.2 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) DUF58 PF01882.13 gi|313122454|ref|YP_004038341.1| - 6.3e-17 61.4 2.3 7.1e-17 61.3 0.2 2.2 3 0 0 3 3 3 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|313122454|ref|YP_004038341.1| - 4.3e-06 26.6 1.9 0.0028 17.6 0.0 3.0 2 0 0 2 2 2 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|313122454|ref|YP_004038341.1| - 0.0014 18.6 2.6 0.052 13.6 0.4 2.9 1 1 1 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|313122454|ref|YP_004038341.1| - 0.0094 15.9 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 CARDB Fn3-like PF14310.1 gi|313122454|ref|YP_004038341.1| - 0.017 15.0 0.5 4.2 7.3 0.0 2.9 3 0 0 3 3 3 0 Fibronectin type III-like domain Acetyltransf_3 PF13302.1 gi|313122456|ref|YP_004038343.1| - 4e-23 82.1 0.0 5e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313122456|ref|YP_004038343.1| - 5.2e-20 71.9 0.0 6e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313122456|ref|YP_004038343.1| - 2.7e-07 30.4 0.0 4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|313122456|ref|YP_004038343.1| - 1.5e-05 24.9 0.0 2.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313122456|ref|YP_004038343.1| - 0.032 13.9 0.0 0.074 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein DUF4013 PF13197.1 gi|313122457|ref|YP_004038344.1| - 2.1e-39 134.5 23.3 2.7e-39 134.2 16.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) Ost4 PF10215.4 gi|313122457|ref|YP_004038344.1| - 9.2 5.8 7.4 2 7.9 1.7 2.5 2 0 0 2 2 2 0 Oligosaccaryltransferase Catalase-rel PF06628.7 gi|313122459|ref|YP_004038346.1| - 0.039 13.8 0.0 0.093 12.6 0.0 1.6 2 0 0 2 2 2 0 Catalase-related immune-responsive BAAT_C PF08840.6 gi|313122461|ref|YP_004038348.1| - 2.2e-39 135.3 0.0 5.3e-39 134.1 0.0 1.6 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.9 gi|313122461|ref|YP_004038348.1| - 4.1e-27 94.3 0.0 6.6e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region Abhydrolase_6 PF12697.2 gi|313122461|ref|YP_004038348.1| - 1.7e-07 31.3 6.9 3e-07 30.5 4.8 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313122461|ref|YP_004038348.1| - 1.9e-07 30.9 0.2 4.4e-07 29.7 0.1 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|313122461|ref|YP_004038348.1| - 3.6e-05 23.1 0.2 0.0014 17.9 0.1 2.7 2 1 0 2 2 2 1 Dienelactone hydrolase family Chlorophyllase PF07224.6 gi|313122461|ref|YP_004038348.1| - 0.0086 14.9 0.0 0.016 13.9 0.0 1.4 1 0 0 1 1 1 1 Chlorophyllase Rieske PF00355.21 gi|313122463|ref|YP_004038350.1| - 9.9e-11 41.0 0.1 1.4e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|313122463|ref|YP_004038350.1| - 0.0011 18.6 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain SprT-like PF10263.4 gi|313122464|ref|YP_004038351.1| - 1.6e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|313122464|ref|YP_004038351.1| - 0.024 14.6 0.1 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4157 PF13699.1 gi|313122464|ref|YP_004038351.1| - 0.03 14.4 0.6 1.9 8.6 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4157) Na_Ca_ex PF01699.19 gi|313122465|ref|YP_004038352.1| - 2.6e-44 150.2 28.6 1.5e-23 82.9 6.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein AAA_3 PF07726.6 gi|313122466|ref|YP_004038353.1| - 6.3e-65 216.6 0.0 9e-65 216.1 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313122466|ref|YP_004038353.1| - 1.4e-15 57.2 0.0 4.4e-15 55.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313122466|ref|YP_004038353.1| - 9e-07 29.1 0.0 6e-06 26.4 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|313122466|ref|YP_004038353.1| - 3.3e-06 26.1 0.1 0.00042 19.2 0.0 2.1 2 0 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|313122466|ref|YP_004038353.1| - 3.7e-05 23.2 0.0 0.00019 20.9 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313122466|ref|YP_004038353.1| - 0.015 14.3 0.1 0.17 10.9 0.0 2.4 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|313122466|ref|YP_004038353.1| - 0.026 14.2 0.1 0.083 12.6 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|313122466|ref|YP_004038353.1| - 0.033 13.3 0.1 2.7 7.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MR_MLE_C PF13378.1 gi|313122467|ref|YP_004038354.1| - 2.8e-20 72.3 0.5 1.2e-19 70.2 0.3 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|313122467|ref|YP_004038354.1| - 7.8e-15 54.8 0.0 3.1e-13 49.7 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|313122467|ref|YP_004038354.1| - 1.6e-14 54.1 0.1 1.1e-13 51.5 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Creatininase PF02633.9 gi|313122468|ref|YP_004038355.1| - 8.6e-63 211.5 0.3 1e-62 211.3 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PRC PF05239.11 gi|313122469|ref|YP_004038356.1| - 8.3e-10 38.4 0.2 9.9e-10 38.1 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain PAS_3 PF08447.6 gi|313122471|ref|YP_004038358.1| - 2.8e-26 91.4 0.2 8.3e-14 51.4 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|313122471|ref|YP_004038358.1| - 7.7e-23 80.8 7.0 2.2e-08 34.4 0.0 5.5 6 1 0 6 6 6 3 PAS domain HATPase_c PF02518.21 gi|313122471|ref|YP_004038358.1| - 2.6e-20 72.2 1.2 6e-20 71.0 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|313122471|ref|YP_004038358.1| - 5.1e-18 64.8 4.0 2.5e-08 33.6 0.0 4.7 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|313122471|ref|YP_004038358.1| - 1.4e-16 60.4 8.5 4e-07 30.0 0.0 5.3 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.19 gi|313122471|ref|YP_004038358.1| - 5.1e-16 58.6 0.0 1.9e-15 56.8 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|313122471|ref|YP_004038358.1| - 3.3e-13 49.4 4.7 7.2e-13 48.3 1.2 3.2 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|313122471|ref|YP_004038358.1| - 3.8e-13 48.7 0.0 4.2e-06 26.4 0.0 4.1 4 0 0 4 4 4 2 PAS domain GAF_3 PF13492.1 gi|313122471|ref|YP_004038358.1| - 2.2e-09 37.4 0.2 1.2e-08 35.1 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|313122471|ref|YP_004038358.1| - 4.4e-08 33.7 0.9 1.7e-07 31.8 0.1 2.5 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.1 gi|313122471|ref|YP_004038358.1| - 7.6e-06 25.8 0.0 0.0031 17.4 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|313122471|ref|YP_004038358.1| - 0.0002 21.4 0.1 0.00066 19.8 0.0 1.9 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|313122471|ref|YP_004038358.1| - 0.00085 19.3 0.6 0.011 15.8 0.0 2.7 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313122471|ref|YP_004038358.1| - 0.0015 18.1 0.0 0.0044 16.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3391 PF11871.3 gi|313122471|ref|YP_004038358.1| - 0.24 11.6 4.0 0.15 12.2 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) PAS_7 PF12860.2 gi|313122471|ref|YP_004038358.1| - 0.44 10.5 7.0 8 6.5 0.0 5.0 5 1 1 6 6 6 0 PAS fold Spo0M PF07070.6 gi|313122472|ref|YP_004038359.1| - 4.7e-69 232.0 0.0 5.6e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.17 gi|313122472|ref|YP_004038359.1| - 0.009 16.1 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain Cohesin PF00963.13 gi|313122472|ref|YP_004038359.1| - 0.086 12.7 0.3 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 Cohesin domain HTH_IclR PF09339.5 gi|313122473|ref|YP_004038360.1| - 6.2e-05 22.5 0.0 0.00015 21.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313122473|ref|YP_004038360.1| - 0.00095 18.7 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313122473|ref|YP_004038360.1| - 0.01 15.2 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313122473|ref|YP_004038360.1| - 0.026 14.2 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313122473|ref|YP_004038360.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Aldo_ket_red PF00248.16 gi|313122474|ref|YP_004038361.1| - 1.8e-67 227.1 0.0 2e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MCPsignal PF00015.16 gi|313122475|ref|YP_004038362.1| - 3.6e-45 154.1 60.6 1.7e-42 145.3 27.0 2.7 2 1 1 3 3 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|313122475|ref|YP_004038362.1| - 3.8e-44 151.5 0.4 3.8e-44 151.5 0.3 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313122475|ref|YP_004038362.1| - 2.5e-32 112.8 1.2 5.1e-32 111.8 0.8 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313122475|ref|YP_004038362.1| - 0.00036 19.9 0.0 0.5 9.6 0.0 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HAMP PF00672.20 gi|313122475|ref|YP_004038362.1| - 0.00058 19.9 0.1 0.00058 19.9 0.1 4.2 4 0 0 4 4 4 1 HAMP domain DUF2130 PF09903.4 gi|313122475|ref|YP_004038362.1| - 0.0058 15.3 4.3 0.026 13.2 0.6 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2130) Laminin_II PF06009.7 gi|313122475|ref|YP_004038362.1| - 0.04 13.6 37.3 0.85 9.3 2.1 5.0 2 2 2 4 4 4 0 Laminin Domain II CK2S PF15011.1 gi|313122475|ref|YP_004038362.1| - 0.099 12.4 16.8 4.3 7.1 0.7 6.1 2 1 3 6 6 6 0 Casein Kinase 2 substrate AAA_13 PF13166.1 gi|313122475|ref|YP_004038362.1| - 0.17 10.3 24.2 0.72 8.2 3.8 2.1 1 1 1 2 2 2 0 AAA domain DUF948 PF06103.6 gi|313122475|ref|YP_004038362.1| - 0.47 10.3 31.7 0.28 11.0 1.4 5.2 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.4 gi|313122475|ref|YP_004038362.1| - 0.77 8.6 13.0 1.8 7.4 3.8 2.4 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Mod_r PF07200.8 gi|313122475|ref|YP_004038362.1| - 1.4 8.8 15.0 3 7.7 2.1 4.2 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein BAR_2 PF10455.4 gi|313122475|ref|YP_004038362.1| - 1.7 7.4 15.8 0.86 8.4 1.7 2.6 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking COG2 PF06148.6 gi|313122475|ref|YP_004038362.1| - 2.5 7.9 22.5 0.61 9.9 1.5 4.3 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Seryl_tRNA_N PF02403.17 gi|313122475|ref|YP_004038362.1| - 3.3 7.7 23.1 14 5.7 3.1 5.0 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Syntaxin PF00804.20 gi|313122475|ref|YP_004038362.1| - 6.2 7.0 24.8 2.3 8.4 3.9 3.6 1 1 2 3 3 3 0 Syntaxin GM_CSF PF01109.12 gi|313122475|ref|YP_004038362.1| - 6.3 6.7 5.6 11 5.9 0.3 3.3 2 1 0 3 3 3 0 Granulocyte-macrophage colony-stimulating factor V_ATPase_I PF01496.14 gi|313122475|ref|YP_004038362.1| - 6.8 4.4 16.8 1.9 6.2 5.8 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|313122475|ref|YP_004038362.1| - 7 6.4 23.4 1.5 8.6 1.0 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) adh_short PF00106.20 gi|313122476|ref|YP_004038363.1| - 7.9e-39 133.2 2.5 1.2e-38 132.6 1.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313122476|ref|YP_004038363.1| - 5e-30 105.0 0.1 6.6e-30 104.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313122476|ref|YP_004038363.1| - 4.3e-16 59.1 0.5 5.7e-16 58.6 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313122476|ref|YP_004038363.1| - 2.3e-06 27.2 0.2 3.5e-06 26.6 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313122476|ref|YP_004038363.1| - 0.00026 21.0 1.0 0.00035 20.6 0.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|313122476|ref|YP_004038363.1| - 0.0039 16.1 0.1 0.0067 15.3 0.1 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|313122476|ref|YP_004038363.1| - 0.0057 16.4 0.5 0.013 15.3 0.3 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|313122476|ref|YP_004038363.1| - 0.0087 15.1 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|313122476|ref|YP_004038363.1| - 0.021 15.2 0.2 0.049 14.0 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF217 PF02697.9 gi|313122477|ref|YP_004038364.1| - 3.6e-14 52.7 0.3 4.3e-14 52.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|313122477|ref|YP_004038364.1| - 0.019 14.8 2.4 2.9 7.9 0.0 3.0 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family DUF883 PF05957.8 gi|313122477|ref|YP_004038364.1| - 0.062 13.6 1.2 0.062 13.6 0.8 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN PF01850.16 gi|313122478|ref|YP_004038365.1| - 1.9e-12 47.5 0.0 2.2e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|313122478|ref|YP_004038365.1| - 0.00031 21.4 0.1 0.00037 21.1 0.1 1.3 1 1 0 1 1 1 1 PIN domain Acyl-CoA_dh_1 PF00441.19 gi|313122479|ref|YP_004038366.1| - 1.8e-38 132.0 1.0 2.5e-38 131.5 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313122479|ref|YP_004038366.1| - 1.7e-19 70.4 0.5 5e-19 68.9 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313122479|ref|YP_004038366.1| - 1.8e-16 60.5 0.9 3.8e-16 59.5 0.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313122479|ref|YP_004038366.1| - 2.4e-16 58.9 0.0 4.8e-16 57.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|313122479|ref|YP_004038366.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal APH PF01636.18 gi|313122480|ref|YP_004038367.1| - 9.1e-44 149.9 8.1 1.2e-43 149.5 5.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|313122480|ref|YP_004038367.1| - 1.9e-05 23.9 0.0 3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|313122480|ref|YP_004038367.1| - 0.025 13.2 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Choline_kinase PF01633.15 gi|313122480|ref|YP_004038367.1| - 0.09 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase ABC_tran PF00005.22 gi|313122481|ref|YP_004038368.1| - 1.1e-27 97.0 0.0 1.4e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122481|ref|YP_004038368.1| - 2.1e-14 54.2 0.0 6.4e-09 36.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313122481|ref|YP_004038368.1| - 0.005 16.3 0.4 0.011 15.2 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|313122481|ref|YP_004038368.1| - 0.0078 15.2 0.0 0.022 13.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122481|ref|YP_004038368.1| - 0.0079 16.3 0.1 0.077 13.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|313122481|ref|YP_004038368.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|313122481|ref|YP_004038368.1| - 0.034 14.0 0.0 0.068 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313122481|ref|YP_004038368.1| - 0.036 13.9 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|313122481|ref|YP_004038368.1| - 0.039 14.1 0.1 0.23 11.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|313122481|ref|YP_004038368.1| - 0.055 11.9 0.0 1.3 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|313122481|ref|YP_004038368.1| - 0.058 12.9 0.2 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313122481|ref|YP_004038368.1| - 0.13 11.6 1.3 0.61 9.4 0.4 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|313122481|ref|YP_004038368.1| - 0.25 11.3 1.5 1.6 8.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|313122481|ref|YP_004038368.1| - 0.4 10.1 1.8 0.41 10.0 0.5 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TIM-br_sig_trns PF09370.5 gi|313122482|ref|YP_004038369.1| - 0.036 13.1 0.1 0.068 12.2 0.1 1.4 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Pox_A9 PF04835.7 gi|313122482|ref|YP_004038369.1| - 1.1 9.2 5.9 0.12 12.3 0.5 2.1 2 0 0 2 2 2 0 A9 protein conserved region EpuA PF11772.3 gi|313122482|ref|YP_004038369.1| - 4.5 6.7 12.1 0.4 10.1 3.8 2.9 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta HTH_Tnp_Tc3_2 PF01498.13 gi|313122483|ref|YP_004038370.1| - 0.00017 21.5 0.3 0.00035 20.5 0.2 1.5 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|313122483|ref|YP_004038370.1| - 0.00052 20.7 0.8 0.0025 18.5 0.2 2.2 2 1 1 3 3 3 1 Homeodomain-like domain PHZA_PHZB PF03284.8 gi|313122483|ref|YP_004038370.1| - 0.013 14.6 1.0 0.4 9.7 0.4 2.1 1 1 1 2 2 2 0 Phenazine biosynthesis protein A/B HTH_24 PF13412.1 gi|313122483|ref|YP_004038370.1| - 0.022 14.1 0.1 0.073 12.4 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122483|ref|YP_004038370.1| - 0.17 11.4 1.5 0.51 9.9 1.1 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Acyl-CoA_dh_1 PF00441.19 gi|313122484|ref|YP_004038371.1| - 7.2e-50 168.9 3.2 1.1e-49 168.3 2.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313122484|ref|YP_004038371.1| - 2.9e-30 105.1 0.3 2.9e-30 105.1 0.2 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313122484|ref|YP_004038371.1| - 9.4e-25 87.4 8.5 1.5e-24 86.7 5.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313122484|ref|YP_004038371.1| - 2.2e-23 81.5 1.0 5.2e-23 80.3 0.2 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|313122484|ref|YP_004038371.1| - 0.0018 17.7 4.6 0.0072 15.7 1.0 2.8 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|313122485|ref|YP_004038372.1| - 7.3e-106 354.0 0.0 8.7e-106 353.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313122485|ref|YP_004038372.1| - 7e-20 71.7 0.7 1.6e-19 70.6 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ADP_ribosyl_GH PF03747.9 gi|313122486|ref|YP_004038373.1| - 8.1e-65 219.4 0.2 9.4e-65 219.2 0.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_Omp PF13488.1 gi|313122486|ref|YP_004038373.1| - 0.028 14.0 3.5 0.16 11.6 0.3 2.3 2 0 0 2 2 2 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|313122486|ref|YP_004038373.1| - 0.2 11.1 5.7 1 8.9 0.9 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|313122486|ref|YP_004038373.1| - 0.61 9.7 7.9 1.4 8.6 2.3 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain NPP1 PF05630.6 gi|313122489|ref|YP_004038376.1| - 0.001 18.8 0.2 0.0031 17.2 0.1 1.7 2 0 0 2 2 2 1 Necrosis inducing protein (NPP1) ADH_N PF08240.7 gi|313122490|ref|YP_004038377.1| - 2e-26 91.8 0.9 4.1e-26 90.8 0.6 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|313122490|ref|YP_004038377.1| - 1.5e-22 79.5 0.5 2.5e-22 78.8 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|313122490|ref|YP_004038377.1| - 0.0032 17.0 0.5 0.0071 15.9 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|313122490|ref|YP_004038377.1| - 0.0094 16.5 0.1 0.023 15.2 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain ELFV_dehydrog PF00208.16 gi|313122490|ref|YP_004038377.1| - 0.019 14.5 0.2 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIS_2 PF13580.1 gi|313122490|ref|YP_004038377.1| - 0.031 13.9 0.1 0.053 13.2 0.1 1.3 1 0 0 1 1 1 0 SIS domain Methyltransf_11 PF08241.7 gi|313122490|ref|YP_004038377.1| - 0.04 14.4 0.1 0.14 12.6 0.1 1.9 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|313122490|ref|YP_004038377.1| - 0.076 13.0 0.2 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|313122490|ref|YP_004038377.1| - 0.094 11.8 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1418 PF07214.7 gi|313122491|ref|YP_004038378.1| - 1.5 8.5 4.2 0.79 9.3 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) DZR PF12773.2 gi|313122492|ref|YP_004038379.1| - 0.005 16.6 0.3 0.0063 16.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313122492|ref|YP_004038379.1| - 0.0078 15.3 1.3 0.18 11.0 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313122492|ref|YP_004038379.1| - 0.033 13.9 1.9 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313122492|ref|YP_004038379.1| - 0.042 13.4 1.9 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Opy2 PF09463.5 gi|313122492|ref|YP_004038379.1| - 0.057 13.5 2.4 2.7 8.1 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein FYVE PF01363.16 gi|313122492|ref|YP_004038379.1| - 0.09 12.6 0.7 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 FYVE zinc finger WCCH PF03716.9 gi|313122492|ref|YP_004038379.1| - 0.095 12.1 0.7 0.095 12.1 0.5 2.1 2 0 0 2 2 2 0 WCCH motif zf-DNL PF05180.7 gi|313122492|ref|YP_004038379.1| - 0.097 12.4 0.7 0.12 12.1 0.5 1.2 1 0 0 1 1 1 0 DNL zinc finger zf-RING_3 PF14369.1 gi|313122492|ref|YP_004038379.1| - 0.14 12.1 4.5 0.87 9.6 3.2 1.9 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|313122492|ref|YP_004038379.1| - 0.19 11.4 3.4 2 8.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|313122492|ref|YP_004038379.1| - 0.28 11.1 3.3 1.4 8.9 2.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|313122492|ref|YP_004038379.1| - 1.3 8.7 4.2 2 8.1 0.7 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger PMSR PF01625.16 gi|313122493|ref|YP_004038380.1| - 1.7e-66 222.9 0.2 2e-66 222.7 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.1 gi|313122493|ref|YP_004038380.1| - 0.11 12.3 0.6 0.19 11.6 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) NUDIX PF00293.23 gi|313122494|ref|YP_004038381.1| - 0.031 13.9 0.2 0.048 13.3 0.2 1.3 1 0 0 1 1 1 0 NUDIX domain MFS_1 PF07690.11 gi|313122495|ref|YP_004038382.1| - 1.6e-40 138.8 57.4 1e-27 96.8 20.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|313122495|ref|YP_004038382.1| - 7.9e-06 24.5 10.7 7.9e-06 24.5 7.4 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein DUF1228 PF06779.9 gi|313122495|ref|YP_004038382.1| - 0.013 15.5 0.3 0.013 15.5 0.2 4.4 4 2 0 4 4 4 0 Protein of unknown function (DUF1228) LacY_symp PF01306.14 gi|313122495|ref|YP_004038382.1| - 0.21 10.1 11.3 0.009 14.6 2.6 2.3 2 1 0 3 3 3 0 LacY proton/sugar symporter adh_short_C2 PF13561.1 gi|313122496|ref|YP_004038383.1| - 3.6e-22 79.3 0.0 4.3e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|313122496|ref|YP_004038383.1| - 6.2e-20 71.7 2.2 8.9e-20 71.2 1.3 1.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313122496|ref|YP_004038383.1| - 6e-10 39.0 0.1 1.3e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|313122496|ref|YP_004038383.1| - 0.075 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313122496|ref|YP_004038383.1| - 0.27 11.1 2.9 1.1 9.2 2.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding TetR_N PF00440.18 gi|313122498|ref|YP_004038385.1| - 1.1e-13 50.6 0.2 2.4e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|313122498|ref|YP_004038385.1| - 1.6e-10 41.0 0.7 2.6e-10 40.3 0.5 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_10 PF04967.7 gi|313122498|ref|YP_004038385.1| - 0.027 14.0 0.1 0.086 12.4 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.1 gi|313122498|ref|YP_004038385.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Roughex PF06020.6 gi|313122498|ref|YP_004038385.1| - 0.035 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Drosophila roughex protein MatE PF01554.13 gi|313122499|ref|YP_004038386.1| - 1.3e-65 219.9 31.1 1.8e-38 131.7 7.3 2.4 2 0 0 2 2 2 2 MatE Glyco_hydro_43 PF04616.9 gi|313122499|ref|YP_004038386.1| - 0.035 13.2 0.0 0.048 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 Pmp3 PF01679.12 gi|313122499|ref|YP_004038386.1| - 0.066 12.9 3.1 0.25 11.0 0.1 2.9 1 1 1 2 2 2 0 Proteolipid membrane potential modulator Polysacc_synt_C PF14667.1 gi|313122499|ref|YP_004038386.1| - 0.5 10.1 48.6 0.029 14.1 14.8 5.0 3 2 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Peptidase_M50 PF02163.17 gi|313122500|ref|YP_004038387.1| - 6e-16 57.9 4.7 8.8e-15 54.1 2.1 2.6 2 1 0 2 2 2 1 Peptidase family M50 RHH_1 PF01402.16 gi|313122501|ref|YP_004038388.1| - 0.088 12.7 0.1 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family TrmB PF01978.14 gi|313122503|ref|YP_004038390.1| - 4e-18 64.8 0.1 6.4e-18 64.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|313122503|ref|YP_004038390.1| - 0.012 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|313122503|ref|YP_004038390.1| - 0.036 13.8 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Chromo PF00385.19 gi|313122503|ref|YP_004038390.1| - 0.077 12.6 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Chromo (CHRromatin Organisation MOdifier) domain RseA_N PF03872.8 gi|313122503|ref|YP_004038390.1| - 0.081 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Anti sigma-E protein RseA, N-terminal domain Blo-t-5 PF11642.3 gi|313122503|ref|YP_004038390.1| - 0.082 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Mite allergen Blo t 5 z-alpha PF02295.12 gi|313122503|ref|YP_004038390.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Multi_Drug_Res PF00893.14 gi|313122504|ref|YP_004038391.1| - 6.1e-27 93.9 4.0 8.2e-27 93.5 2.8 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|313122504|ref|YP_004038391.1| - 4.9e-06 26.7 6.3 6.6e-06 26.3 4.4 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|313122504|ref|YP_004038391.1| - 0.014 15.4 9.3 0.02 14.9 6.4 1.4 1 1 0 1 1 1 0 EamA-like transporter family TPT PF03151.11 gi|313122504|ref|YP_004038391.1| - 5.9 6.5 8.3 0.57 9.8 2.2 1.8 2 1 0 2 2 2 0 Triose-phosphate Transporter family DUF981 PF06168.6 gi|313122504|ref|YP_004038391.1| - 6.8 6.4 11.0 62 3.2 7.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DDE_Tnp_1 PF01609.16 gi|313122505|ref|YP_004038392.1| - 6e-09 35.7 0.3 1.2e-08 34.7 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|313122505|ref|YP_004038392.1| - 7.9e-09 35.3 0.6 3.6e-07 30.0 0.0 2.7 2 0 0 2 2 2 1 Transposase domain (DUF772) PhageP22-tail PF09251.5 gi|313122505|ref|YP_004038392.1| - 0.012 13.8 0.0 0.019 13.2 0.0 1.2 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike DDE_Tnp_1_2 PF13586.1 gi|313122505|ref|YP_004038392.1| - 0.036 14.2 0.1 0.37 10.9 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.1 gi|313122508|ref|YP_004038395.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313122508|ref|YP_004038395.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313122508|ref|YP_004038395.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313122508|ref|YP_004038395.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313122508|ref|YP_004038395.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313122508|ref|YP_004038395.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease DUF3792 PF12670.2 gi|313122510|ref|YP_004038397.1| - 0.0037 17.0 3.6 0.0044 16.8 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) GPI2 PF06432.6 gi|313122510|ref|YP_004038397.1| - 0.011 15.0 1.1 0.012 14.9 0.8 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase FeoB_C PF07664.7 gi|313122510|ref|YP_004038397.1| - 0.028 13.8 4.3 0.11 11.9 0.2 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus RseC_MucC PF04246.7 gi|313122510|ref|YP_004038397.1| - 0.03 13.8 2.0 0.036 13.6 1.4 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3043 PF11241.3 gi|313122510|ref|YP_004038397.1| - 0.073 12.6 1.5 0.076 12.5 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) FixQ PF05545.6 gi|313122510|ref|YP_004038397.1| - 0.26 10.9 3.8 7.3 6.3 0.9 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4229 PF14012.1 gi|313122510|ref|YP_004038397.1| - 0.81 9.6 5.8 5.4 6.9 3.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) DUF1049 PF06305.6 gi|313122510|ref|YP_004038397.1| - 9.8 5.7 7.0 10 5.6 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Toxin-deaminase PF14424.1 gi|313122511|ref|YP_004038398.1| - 0.097 12.6 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases Acyl-CoA_dh_2 PF08028.6 gi|313122511|ref|YP_004038398.1| - 0.16 12.2 0.7 0.2 11.9 0.5 1.1 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain SBP_bac_5 PF00496.17 gi|313122512|ref|YP_004038399.1| - 8.2e-66 222.3 2.0 9.8e-66 222.0 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|313122513|ref|YP_004038400.1| - 8.1e-38 129.7 10.8 8.1e-38 129.7 7.5 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3561 PF12084.3 gi|313122513|ref|YP_004038400.1| - 0.062 13.1 0.1 0.062 13.1 0.1 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3561) BPD_transp_1 PF00528.17 gi|313122514|ref|YP_004038401.1| - 4.1e-31 107.9 9.7 4.1e-31 107.9 6.7 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313122514|ref|YP_004038401.1| - 2.7e-08 33.0 6.2 6.9e-08 31.7 0.0 2.8 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|313122515|ref|YP_004038402.1| - 1.3e-27 96.7 0.0 1.8e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122515|ref|YP_004038402.1| - 2.1e-15 56.7 0.4 4.5e-15 55.7 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122515|ref|YP_004038402.1| - 2.8e-07 30.8 0.0 1.6e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313122515|ref|YP_004038402.1| - 1.8e-06 28.1 0.1 0.00032 20.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122515|ref|YP_004038402.1| - 0.0023 17.3 0.1 0.0047 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313122515|ref|YP_004038402.1| - 0.008 15.4 0.1 0.19 10.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|313122515|ref|YP_004038402.1| - 0.014 14.8 0.2 1 8.7 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|313122515|ref|YP_004038402.1| - 0.072 13.0 3.3 0.35 10.8 2.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|313122515|ref|YP_004038402.1| - 0.092 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|313122515|ref|YP_004038402.1| - 0.12 11.7 0.4 0.39 10.0 0.3 1.8 1 1 0 1 1 1 0 AAA-like domain AIG1 PF04548.11 gi|313122515|ref|YP_004038402.1| - 0.17 10.9 0.2 0.41 9.7 0.0 1.7 2 0 0 2 2 2 0 AIG1 family ABC_tran PF00005.22 gi|313122516|ref|YP_004038403.1| - 4e-30 104.9 0.0 5.4e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122516|ref|YP_004038403.1| - 7.5e-21 74.2 3.2 1.4e-20 73.3 2.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122516|ref|YP_004038403.1| - 2.9e-09 37.3 0.0 2e-06 27.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313122516|ref|YP_004038403.1| - 5.7e-09 36.2 0.2 1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122516|ref|YP_004038403.1| - 7.9e-05 22.8 0.1 0.00039 20.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313122516|ref|YP_004038403.1| - 0.0019 17.3 0.0 0.0033 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|313122516|ref|YP_004038403.1| - 0.0029 16.1 0.0 0.085 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|313122516|ref|YP_004038403.1| - 0.0033 17.1 0.3 0.14 11.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|313122516|ref|YP_004038403.1| - 0.0045 16.8 0.1 0.013 15.4 0.1 1.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313122516|ref|YP_004038403.1| - 0.0088 15.4 0.2 0.018 14.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313122516|ref|YP_004038403.1| - 0.009 16.3 0.0 0.026 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|313122516|ref|YP_004038403.1| - 0.012 15.8 0.1 0.092 12.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|313122516|ref|YP_004038403.1| - 0.013 15.5 0.0 0.065 13.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|313122516|ref|YP_004038403.1| - 0.016 14.7 0.0 0.47 9.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|313122516|ref|YP_004038403.1| - 0.019 15.7 0.0 0.041 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|313122516|ref|YP_004038403.1| - 0.024 14.1 0.1 0.042 13.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|313122516|ref|YP_004038403.1| - 0.027 14.6 0.0 0.056 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|313122516|ref|YP_004038403.1| - 0.032 13.3 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.20 gi|313122516|ref|YP_004038403.1| - 0.038 13.4 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|313122516|ref|YP_004038403.1| - 0.077 12.6 0.2 0.15 11.7 0.2 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|313122516|ref|YP_004038403.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|313122516|ref|YP_004038403.1| - 0.082 12.3 0.1 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|313122516|ref|YP_004038403.1| - 0.12 11.2 0.1 0.2 10.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|313122516|ref|YP_004038403.1| - 0.12 12.0 0.2 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CoaE PF01121.15 gi|313122516|ref|YP_004038403.1| - 0.15 11.4 0.0 1.7 7.9 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase Pyr_redox_2 PF07992.9 gi|313122517|ref|YP_004038404.1| - 4e-08 33.3 1.7 7.4e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313122517|ref|YP_004038404.1| - 1.4e-06 27.3 3.0 0.004 16.0 0.2 2.2 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|313122517|ref|YP_004038404.1| - 4.3e-06 25.8 2.4 0.00051 19.0 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313122517|ref|YP_004038404.1| - 5.1e-06 26.4 0.2 1.1e-05 25.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313122517|ref|YP_004038404.1| - 7.7e-06 24.6 0.0 7.8e-05 21.3 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|313122517|ref|YP_004038404.1| - 6.2e-05 22.0 0.0 9.1e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|313122517|ref|YP_004038404.1| - 0.00035 19.7 0.0 0.0019 17.3 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|313122517|ref|YP_004038404.1| - 0.0013 17.8 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|313122517|ref|YP_004038404.1| - 0.0014 18.6 0.7 0.55 10.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313122517|ref|YP_004038404.1| - 0.0018 17.4 0.2 0.0037 16.4 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|313122517|ref|YP_004038404.1| - 0.028 13.3 0.1 0.061 12.2 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|313122517|ref|YP_004038404.1| - 0.028 14.1 1.0 1.1 9.0 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|313122517|ref|YP_004038404.1| - 0.036 13.7 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313122517|ref|YP_004038404.1| - 0.073 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-ph_phosp PF04029.9 gi|313122517|ref|YP_004038404.1| - 0.15 11.0 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase AP_endonuc_2 PF01261.19 gi|313122518|ref|YP_004038405.1| - 8.1e-20 71.0 2.7 1.2e-19 70.4 1.9 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|313122519|ref|YP_004038406.1| - 3.1e-08 33.9 0.5 4.6e-08 33.3 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.22 gi|313122520|ref|YP_004038407.1| - 1.3e-29 103.2 0.0 1.7e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122520|ref|YP_004038407.1| - 1.8e-15 57.0 0.3 3.2e-15 56.2 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122520|ref|YP_004038407.1| - 3.6e-07 30.4 0.1 0.0038 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|313122520|ref|YP_004038407.1| - 0.00053 20.1 0.5 0.0043 17.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313122520|ref|YP_004038407.1| - 0.0053 15.6 0.0 0.0066 15.3 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.1 gi|313122520|ref|YP_004038407.1| - 0.023 14.2 0.1 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|313122520|ref|YP_004038407.1| - 0.079 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|313122520|ref|YP_004038407.1| - 0.08 12.9 0.6 0.17 11.8 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|313122520|ref|YP_004038407.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|313122520|ref|YP_004038407.1| - 0.12 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313122520|ref|YP_004038407.1| - 0.14 11.6 0.2 2.5 7.4 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|313122520|ref|YP_004038407.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|313122520|ref|YP_004038407.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|313122520|ref|YP_004038407.1| - 0.16 11.0 0.0 0.48 9.4 0.0 1.7 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|313122520|ref|YP_004038407.1| - 0.19 11.3 0.2 0.32 10.6 0.1 1.3 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|313122520|ref|YP_004038407.1| - 0.26 11.2 1.4 6.8 6.6 1.0 2.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|313122521|ref|YP_004038408.1| - 1.1e-23 84.0 0.0 1.5e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122521|ref|YP_004038408.1| - 1.3e-19 70.3 0.6 2.5e-19 69.3 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122521|ref|YP_004038408.1| - 2.9e-11 43.8 0.5 3.7e-08 33.6 0.2 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313122521|ref|YP_004038408.1| - 0.00063 19.7 0.3 0.0014 18.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|313122521|ref|YP_004038408.1| - 0.00065 18.9 0.8 0.84 8.8 0.1 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313122521|ref|YP_004038408.1| - 0.0019 18.3 0.3 0.018 15.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313122521|ref|YP_004038408.1| - 0.0041 16.2 0.2 0.16 11.0 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|313122521|ref|YP_004038408.1| - 0.0092 16.3 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122521|ref|YP_004038408.1| - 0.019 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|313122521|ref|YP_004038408.1| - 0.022 13.5 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_25 PF13481.1 gi|313122521|ref|YP_004038408.1| - 0.023 14.0 0.0 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|313122521|ref|YP_004038408.1| - 0.025 14.2 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|313122521|ref|YP_004038408.1| - 0.049 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|313122521|ref|YP_004038408.1| - 0.091 12.1 0.0 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|313122521|ref|YP_004038408.1| - 0.12 11.5 0.1 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|313122521|ref|YP_004038408.1| - 0.13 11.6 0.1 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|313122521|ref|YP_004038408.1| - 0.16 10.4 0.5 1 7.8 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|313122522|ref|YP_004038409.1| - 1.9e-23 82.9 17.1 1.9e-23 82.9 11.8 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313122523|ref|YP_004038410.1| - 5.9e-36 123.7 11.5 5.9e-36 123.7 8.0 2.0 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|313122524|ref|YP_004038411.1| - 2.9e-39 134.9 6.2 4.1e-39 134.4 4.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313122524|ref|YP_004038411.1| - 0.092 12.7 1.0 0.17 11.9 0.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HEAT_2 PF13646.1 gi|313122526|ref|YP_004038413.1| - 1.1e-18 67.3 28.7 7.8e-11 42.1 1.8 4.1 2 2 2 4 4 4 4 HEAT repeats HEAT PF02985.17 gi|313122526|ref|YP_004038413.1| - 2.4e-11 42.7 9.1 0.3 11.2 0.0 6.4 7 0 0 7 7 7 4 HEAT repeat Adaptin_N PF01602.15 gi|313122526|ref|YP_004038413.1| - 2.4e-06 26.1 2.9 0.00033 19.1 0.4 2.1 1 1 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.1 gi|313122526|ref|YP_004038413.1| - 9.3e-06 25.9 23.0 0.033 14.6 0.3 5.6 3 2 3 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|313122526|ref|YP_004038413.1| - 0.00076 19.7 9.9 0.99 10.0 0.1 6.1 6 2 0 6 6 6 2 PBS lyase HEAT-like repeat DUF3730 PF12530.3 gi|313122526|ref|YP_004038413.1| - 0.001 19.0 0.9 0.31 10.9 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3730) Cnd1 PF12717.2 gi|313122526|ref|YP_004038413.1| - 0.0074 16.1 0.0 0.073 12.9 0.0 2.3 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 TINF2_N PF14973.1 gi|313122526|ref|YP_004038413.1| - 0.018 15.1 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Arm PF00514.18 gi|313122526|ref|YP_004038413.1| - 0.02 14.7 0.0 0.02 14.7 0.0 3.7 5 0 0 5 5 5 0 Armadillo/beta-catenin-like repeat Nipped-B_C PF12830.2 gi|313122526|ref|YP_004038413.1| - 0.02 14.5 1.5 0.21 11.2 0.1 2.7 3 0 0 3 3 3 0 Sister chromatid cohesion C-terminus MR_MLE_C PF13378.1 gi|313122527|ref|YP_004038414.1| - 2.8e-32 110.9 0.0 4.9e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|313122527|ref|YP_004038414.1| - 6.4e-27 93.8 0.0 1.3e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|313122527|ref|YP_004038414.1| - 3.3e-11 43.5 0.0 7e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NanE PF04131.9 gi|313122527|ref|YP_004038414.1| - 0.038 12.9 0.1 0.071 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase IclR PF01614.13 gi|313122528|ref|YP_004038415.1| - 1.5e-23 82.9 0.0 2.2e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313122528|ref|YP_004038415.1| - 1.2e-12 47.1 0.4 9.4e-12 44.3 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313122528|ref|YP_004038415.1| - 2.6e-07 30.3 0.0 5.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313122528|ref|YP_004038415.1| - 6.2e-07 29.0 0.0 2.1e-06 27.3 0.0 1.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313122528|ref|YP_004038415.1| - 8.2e-07 28.5 0.0 1.8e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|313122528|ref|YP_004038415.1| - 3.9e-06 26.1 0.0 8.8e-06 25.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|313122528|ref|YP_004038415.1| - 1.7e-05 24.4 0.0 2.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|313122528|ref|YP_004038415.1| - 2.3e-05 23.9 0.0 5.2e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|313122528|ref|YP_004038415.1| - 0.0047 16.8 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|313122528|ref|YP_004038415.1| - 0.0087 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|313122528|ref|YP_004038415.1| - 0.015 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|313122528|ref|YP_004038415.1| - 0.018 14.6 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_DeoR PF08220.7 gi|313122528|ref|YP_004038415.1| - 0.027 14.0 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313122528|ref|YP_004038415.1| - 0.042 13.3 0.1 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Acetyltransf_7 PF13508.1 gi|313122529|ref|YP_004038416.1| - 1.7e-07 31.2 0.0 8.1e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313122529|ref|YP_004038416.1| - 1.1e-06 28.5 0.0 4.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|313122529|ref|YP_004038416.1| - 4.6e-05 23.2 0.0 0.034 14.0 0.0 2.6 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313122529|ref|YP_004038416.1| - 4.8e-05 23.0 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313122529|ref|YP_004038416.1| - 0.0011 18.8 0.1 0.021 14.7 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313122529|ref|YP_004038416.1| - 0.0031 17.6 0.0 0.025 14.6 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Phenol_hyd_sub PF06099.6 gi|313122530|ref|YP_004038417.1| - 0.14 12.0 0.2 0.25 11.1 0.1 1.5 1 1 0 1 1 1 0 Phenol hydroxylase subunit Ferritin PF00210.19 gi|313122531|ref|YP_004038418.1| - 1.7e-25 89.3 6.7 2e-25 89.1 4.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2959 PF11172.3 gi|313122531|ref|YP_004038418.1| - 0.0087 15.8 0.7 0.041 13.6 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2959) DUF3572 PF12096.3 gi|313122531|ref|YP_004038418.1| - 0.08 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3572) DUF1664 PF07889.7 gi|313122531|ref|YP_004038418.1| - 0.11 12.2 0.1 0.31 10.8 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF1451 PF07295.6 gi|313122531|ref|YP_004038418.1| - 1.1 9.0 5.0 6 6.6 0.4 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1451) PAS_9 PF13426.1 gi|313122535|ref|YP_004038422.1| - 2.1e-54 182.2 1.4 6.9e-25 87.4 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313122535|ref|YP_004038422.1| - 1.3e-35 121.6 2.0 2.2e-16 59.6 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|313122535|ref|YP_004038422.1| - 1.2e-31 108.9 8.5 6.3e-14 51.9 0.1 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|313122535|ref|YP_004038422.1| - 6.3e-23 79.8 0.0 3.7e-07 29.7 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|313122535|ref|YP_004038422.1| - 1e-20 73.5 0.8 4.1e-09 36.4 0.1 3.7 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|313122535|ref|YP_004038422.1| - 8.8e-18 63.6 0.0 1.8e-17 62.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|313122535|ref|YP_004038422.1| - 1.8e-12 47.9 0.9 7.4e-12 45.9 0.1 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|313122535|ref|YP_004038422.1| - 2.4e-07 31.0 0.0 5.4e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|313122535|ref|YP_004038422.1| - 1.4e-05 25.3 0.1 0.08 13.2 0.0 3.4 3 1 0 3 3 2 2 PAS domain PAS_7 PF12860.2 gi|313122535|ref|YP_004038422.1| - 2.8e-05 24.1 2.4 0.18 11.8 0.0 3.7 3 1 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|313122535|ref|YP_004038422.1| - 9.1e-05 22.5 0.0 0.00025 21.1 0.0 1.8 1 0 0 1 1 1 1 GAF domain DUF2458 PF10454.4 gi|313122535|ref|YP_004038422.1| - 0.015 15.2 0.6 0.11 12.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) Sigma70_r4 PF04545.11 gi|313122535|ref|YP_004038422.1| - 0.027 13.7 3.1 0.09 12.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|313122535|ref|YP_004038422.1| - 0.047 13.4 0.0 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 HTH domain FAD_binding_4 PF01565.18 gi|313122536|ref|YP_004038423.1| - 1.9e-37 127.8 2.8 3.2e-37 127.0 2.0 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|313122536|ref|YP_004038423.1| - 1.9e-08 34.0 0.1 3.8e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|313122536|ref|YP_004038423.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding DUF4098 PF13345.1 gi|313122537|ref|YP_004038424.1| - 5.9e-05 22.9 4.9 0.8 9.6 0.1 3.6 1 1 2 3 3 3 3 Domain of unknown function (DUF4098) HtaA PF04213.8 gi|313122537|ref|YP_004038424.1| - 0.00083 19.6 1.3 0.86 9.8 0.1 2.6 1 1 2 3 3 3 3 Htaa DUF3540 PF12059.3 gi|313122537|ref|YP_004038424.1| - 0.0039 16.8 0.0 0.88 9.1 0.0 2.9 1 1 2 3 3 3 1 Protein of unknown function (DUF3540) DUF2807 PF10988.3 gi|313122537|ref|YP_004038424.1| - 0.0074 15.8 2.1 1.8 8.0 0.1 2.8 1 1 0 2 2 2 2 Protein of unknown function (DUF2807) AsmA_2 PF13502.1 gi|313122537|ref|YP_004038424.1| - 0.042 13.1 0.2 0.42 9.9 0.0 2.5 1 1 0 2 2 2 0 AsmA-like C-terminal region HSP20 PF00011.16 gi|313122537|ref|YP_004038424.1| - 0.28 11.0 8.3 0.32 10.8 0.6 3.4 1 1 1 3 3 3 0 Hsp20/alpha crystallin family MinE PF03776.9 gi|313122537|ref|YP_004038424.1| - 0.91 9.0 5.4 2.8 7.4 0.1 3.5 4 0 0 4 4 4 0 Septum formation topological specificity factor MinE Big_3 PF07523.7 gi|313122537|ref|YP_004038424.1| - 2.1 8.4 6.5 0.89 9.6 0.1 3.3 1 1 3 4 4 4 0 Bacterial Ig-like domain (group 3) NAD_binding_10 PF13460.1 gi|313122538|ref|YP_004038425.1| - 1.6e-15 57.5 0.0 3.2e-15 56.6 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313122538|ref|YP_004038425.1| - 7.1e-14 51.6 0.0 1.7e-13 50.3 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|313122538|ref|YP_004038425.1| - 3e-09 36.6 0.0 2.4e-07 30.4 0.0 2.1 1 1 0 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313122538|ref|YP_004038425.1| - 4.1e-05 22.4 0.0 6.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family MarR_2 PF12802.2 gi|313122539|ref|YP_004038426.1| - 2.2e-06 27.2 0.0 1.3e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|313122539|ref|YP_004038426.1| - 3.6e-06 26.4 0.0 1.1e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313122539|ref|YP_004038426.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313122539|ref|YP_004038426.1| - 0.0024 18.1 0.0 0.019 15.3 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|313122539|ref|YP_004038426.1| - 0.0055 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313122539|ref|YP_004038426.1| - 0.0062 16.3 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|313122539|ref|YP_004038426.1| - 0.0091 15.9 0.0 0.54 10.2 0.0 2.8 2 1 1 3 3 3 1 Sulfolobus plasmid regulatory protein HTH_5 PF01022.15 gi|313122539|ref|YP_004038426.1| - 0.013 15.1 0.0 0.066 12.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|313122539|ref|YP_004038426.1| - 0.015 14.7 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family NBP1 PF08537.5 gi|313122539|ref|YP_004038426.1| - 0.046 12.9 0.1 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 Glyco_hydro_15 PF00723.16 gi|313122539|ref|YP_004038426.1| - 0.06 11.8 0.1 0.082 11.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 15 ABC2_membrane_4 PF12730.2 gi|313122540|ref|YP_004038427.1| - 0.75 8.9 6.6 1.5 7.9 4.6 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2198 PF09964.4 gi|313122540|ref|YP_004038427.1| - 5.6 6.8 6.6 0.74 9.6 0.9 2.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2198) ADH_zinc_N_2 PF13602.1 gi|313122541|ref|YP_004038428.1| - 6e-26 91.8 0.0 1.4e-25 90.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|313122541|ref|YP_004038428.1| - 7.1e-19 67.6 0.1 2e-18 66.1 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313122541|ref|YP_004038428.1| - 2.9e-10 39.8 0.0 1.9e-09 37.2 0.0 2.3 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain PAS_9 PF13426.1 gi|313122543|ref|YP_004038430.1| - 1.2e-20 73.7 0.2 4.5e-15 55.9 0.1 3.1 2 0 0 2 2 2 2 PAS domain HTH_10 PF04967.7 gi|313122543|ref|YP_004038430.1| - 5.7e-19 67.4 0.0 1.4e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313122543|ref|YP_004038430.1| - 1.1e-17 64.0 4.7 6.9e-10 38.9 0.1 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|313122543|ref|YP_004038430.1| - 4.4e-17 61.8 0.5 5.6e-13 48.6 0.1 3.0 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|313122543|ref|YP_004038430.1| - 3.3e-15 56.8 4.3 9.2e-12 45.6 0.0 3.8 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.1 gi|313122543|ref|YP_004038430.1| - 5.7e-12 45.0 0.2 1.2e-06 28.1 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|313122543|ref|YP_004038430.1| - 9.4e-08 32.2 0.1 0.012 15.7 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS_7 PF12860.2 gi|313122543|ref|YP_004038430.1| - 2.5e-07 30.6 1.4 0.0015 18.4 0.1 3.7 3 1 0 3 3 3 2 PAS fold HTH_20 PF12840.2 gi|313122543|ref|YP_004038430.1| - 0.001 18.8 0.0 0.0041 16.9 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313122543|ref|YP_004038430.1| - 0.0022 17.6 0.0 0.0057 16.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Erf4 PF10256.4 gi|313122543|ref|YP_004038430.1| - 0.081 12.7 0.3 18 5.2 0.0 2.9 3 0 0 3 3 3 0 Golgin subfamily A member 7/ERF4 family PAS_3 PF08447.6 gi|313122543|ref|YP_004038430.1| - 0.1 12.7 0.0 0.31 11.1 0.0 1.9 1 0 0 1 1 1 0 PAS fold Methyltransf_26 PF13659.1 gi|313122545|ref|YP_004038432.1| - 5.6e-14 52.1 0.6 2.9e-13 49.8 0.4 2.3 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|313122545|ref|YP_004038432.1| - 6.3e-07 29.7 0.0 1.2e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|313122545|ref|YP_004038432.1| - 7.5e-07 28.5 0.0 0.0017 17.4 0.0 2.5 2 1 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|313122545|ref|YP_004038432.1| - 1.8e-05 24.4 0.0 6.4e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Glyco_hydro_88 PF07470.8 gi|313122546|ref|YP_004038433.1| - 1.4e-08 34.2 0.4 0.029 13.4 0.0 3.2 2 1 1 3 3 3 3 Glycosyl Hydrolase Family 88 Prenyltrans_1 PF13243.1 gi|313122546|ref|YP_004038433.1| - 4.6e-06 26.5 0.5 0.0087 16.0 0.0 3.1 2 2 1 3 3 3 2 Prenyltransferase-like Glyco_hydro_76 PF03663.9 gi|313122546|ref|YP_004038433.1| - 0.00015 21.2 3.1 0.0055 16.1 0.0 2.9 2 1 1 3 3 3 2 Glycosyl hydrolase family 76 DUF1616 PF07760.6 gi|313122548|ref|YP_004038435.1| - 2.6e-49 167.8 0.5 3.1e-49 167.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2976 PF11190.3 gi|313122548|ref|YP_004038435.1| - 0.0044 16.5 0.2 0.014 14.9 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2976)