# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF354 PF04007.12 gi|313122370|ref|YP_004038257.1| - 1.9e-29 102.8 0.0 2.4e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Vwaint PF14624.6 gi|313122371|ref|YP_004038258.1| - 0.073 13.2 0.9 14 5.9 0.1 2.3 2 0 0 2 2 2 0 VWA / Hh protein intein-like GFO_IDH_MocA PF01408.22 gi|313122372|ref|YP_004038259.1| - 1.4e-23 84.0 0.0 2.4e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|313122372|ref|YP_004038259.1| - 0.028 14.9 0.1 0.056 13.9 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain F420_oxidored PF03807.17 gi|313122372|ref|YP_004038259.1| - 0.036 14.6 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.24 gi|313122373|ref|YP_004038260.1| - 1e-13 51.2 0.2 9.5e-07 28.5 0.0 2.2 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313122373|ref|YP_004038260.1| - 0.045 12.6 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) VCBS PF13517.6 gi|313122374|ref|YP_004038261.1| - 1e-25 90.0 22.3 1.1e-10 41.9 0.7 5.9 4 2 2 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|313122374|ref|YP_004038261.1| - 2.5e-17 62.7 28.0 0.018 15.2 0.0 7.2 7 0 0 7 7 7 6 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|313122374|ref|YP_004038261.1| - 1.9e-05 24.1 8.1 5.3 6.4 0.0 6.3 6 1 1 7 7 7 2 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.6 gi|313122374|ref|YP_004038261.1| - 0.017 15.1 0.8 7.1 6.7 0.0 4.0 5 0 0 5 5 5 0 Ciliary BBSome complex subunit 2, middle region Itfg2 PF15907.5 gi|313122374|ref|YP_004038261.1| - 0.044 12.8 5.1 3.4 6.6 0.4 3.7 3 1 2 5 5 5 0 Integrin-alpha FG-GAP repeat-containing protein 2 EF-hand_5 PF13202.6 gi|313122374|ref|YP_004038261.1| - 0.073 12.6 16.6 1.5 8.4 0.6 5.4 5 0 0 5 5 5 0 EF hand PliI PF16743.5 gi|313122374|ref|YP_004038261.1| - 0.11 12.2 9.3 14 5.5 0.1 4.8 2 2 2 5 5 5 0 Periplasmic lysozyme inhibitor of I-type lysozyme EF-hand_1 PF00036.32 gi|313122374|ref|YP_004038261.1| - 4.8 7.0 18.2 6.8 6.5 0.4 5.5 6 0 0 6 6 6 0 EF hand Dockerin_1 PF00404.18 gi|313122374|ref|YP_004038261.1| - 8.1 6.7 14.2 74 3.7 0.1 5.5 6 0 0 6 6 6 0 Dockerin type I domain Methyltransf_21 PF05050.12 gi|313122375|ref|YP_004038262.1| - 2.7e-17 63.3 0.0 3.7e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|313122375|ref|YP_004038262.1| - 2.7e-07 30.2 0.0 1.9e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|313122375|ref|YP_004038262.1| - 1.3e-06 28.3 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|313122375|ref|YP_004038262.1| - 0.035 13.7 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|313122375|ref|YP_004038262.1| - 0.039 13.9 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313122375|ref|YP_004038262.1| - 0.066 13.9 0.0 0.18 12.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Polysacc_deac_1 PF01522.21 gi|313122376|ref|YP_004038263.1| - 2.7e-28 98.4 0.0 4.9e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF693 PF05113.13 gi|313122376|ref|YP_004038263.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF693) Glycos_transf_2 PF00535.26 gi|313122377|ref|YP_004038264.1| - 6.7e-14 52.1 0.3 1.2e-13 51.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122377|ref|YP_004038264.1| - 3e-09 37.1 0.9 4.9e-08 33.1 0.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313122377|ref|YP_004038264.1| - 1.6e-08 34.4 0.1 0.00036 20.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|313122377|ref|YP_004038264.1| - 0.033 13.8 0.0 0.065 12.9 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase ThiP_synth PF10120.9 gi|313122377|ref|YP_004038264.1| - 0.037 13.6 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Thiamine-phosphate synthase Glyco_trans_2_3 PF13632.6 gi|313122377|ref|YP_004038264.1| - 0.13 12.1 0.6 2.4 8.0 0.6 2.2 1 1 0 1 1 1 0 Glycosyl transferase family group 2 COG6 PF06419.11 gi|313122378|ref|YP_004038265.1| - 0.017 13.4 0.0 0.018 13.3 0.0 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Glycos_transf_1 PF00534.20 gi|313122380|ref|YP_004038267.1| - 4.6e-25 88.1 0.0 7e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313122380|ref|YP_004038267.1| - 1.1e-24 87.3 0.0 2.4e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313122380|ref|YP_004038267.1| - 9.7e-16 58.2 1.1 1.9e-15 57.3 1.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313122380|ref|YP_004038267.1| - 1.6e-14 54.7 3.4 3.3e-14 53.6 3.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|313122380|ref|YP_004038267.1| - 9.8e-10 38.7 0.0 4.1e-08 33.5 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|313122380|ref|YP_004038267.1| - 0.00052 20.1 0.0 0.00082 19.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Phosphodiest PF01663.22 gi|313122381|ref|YP_004038268.1| - 3.5e-47 161.7 0.0 5.7e-46 157.7 0.0 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Beta_helix PF13229.6 gi|313122382|ref|YP_004038269.1| - 6e-06 26.2 9.6 0.0034 17.2 2.4 3.3 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|313122382|ref|YP_004038269.1| - 0.0023 17.8 1.8 0.17 11.7 0.2 3.4 1 1 2 3 3 3 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|313122383|ref|YP_004038270.1| - 0.00059 19.7 28.8 0.0045 16.8 6.2 4.3 4 1 0 5 5 5 2 Right handed beta helix region DUF4115 PF13464.6 gi|313122383|ref|YP_004038270.1| - 0.019 15.1 0.1 6.3 7.1 0.0 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) TAT_signal PF10518.9 gi|313122383|ref|YP_004038270.1| - 3.1 7.8 14.3 10 6.2 14.3 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MKRN1_C PF15815.5 gi|313122384|ref|YP_004038271.1| - 0.061 13.7 0.2 0.091 13.2 0.2 1.4 1 1 0 1 1 1 0 E3 ubiquitin-protein ligase makorin-1, C-terminal Sulfatase PF00884.23 gi|313122385|ref|YP_004038272.1| - 3.6e-43 148.1 0.2 4.6e-43 147.8 0.2 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.18 gi|313122385|ref|YP_004038272.1| - 0.088 12.2 0.2 0.17 11.2 0.2 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.26 gi|313122386|ref|YP_004038273.1| - 2.4e-33 115.3 0.1 3.8e-33 114.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122386|ref|YP_004038273.1| - 1.1e-20 74.5 0.5 2e-20 73.7 0.5 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313122386|ref|YP_004038273.1| - 8.4e-11 41.9 0.0 6.6e-10 38.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TPR_16 PF13432.6 gi|313122386|ref|YP_004038273.1| - 0.064 13.9 1.3 0.16 12.7 1.3 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat UPF0167 PF03691.14 gi|313122386|ref|YP_004038273.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) TPR_2 PF07719.17 gi|313122386|ref|YP_004038273.1| - 0.084 13.0 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Polysacc_synt_3 PF13440.6 gi|313122387|ref|YP_004038274.1| - 4.2e-75 252.7 5.9 4.2e-75 252.7 5.9 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|313122387|ref|YP_004038274.1| - 1e-35 123.5 10.0 1e-35 123.5 10.0 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|313122387|ref|YP_004038274.1| - 5.7e-16 58.9 14.0 5.7e-16 58.9 14.0 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain DUF2613 PF11021.8 gi|313122387|ref|YP_004038274.1| - 0.061 13.4 0.5 0.061 13.4 0.5 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2613) Kinocilin PF15033.6 gi|313122387|ref|YP_004038274.1| - 0.075 12.7 9.1 0.13 12.0 0.1 4.1 4 0 0 4 4 4 0 Kinocilin protein Sulfatase PF00884.23 gi|313122388|ref|YP_004038275.1| - 2.6e-34 119.0 0.6 3.4e-34 118.6 0.6 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313122388|ref|YP_004038275.1| - 0.00038 20.1 0.1 0.12 11.9 0.0 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|313122388|ref|YP_004038275.1| - 0.077 12.4 0.7 0.13 11.6 0.7 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily HAD_2 PF13419.6 gi|313122389|ref|YP_004038276.1| - 4.3e-19 69.3 0.0 6.4e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313122389|ref|YP_004038276.1| - 1.9e-09 38.1 2.0 7.4e-08 32.9 0.6 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313122389|ref|YP_004038276.1| - 1.6e-08 35.2 0.2 2.5e-08 34.6 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313122389|ref|YP_004038276.1| - 2.8e-08 33.7 0.1 6.8e-08 32.5 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Glycos_transf_2 PF00535.26 gi|313122390|ref|YP_004038277.1| - 1.2e-23 83.8 0.0 2.6e-23 82.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122390|ref|YP_004038277.1| - 8.4e-08 32.4 0.2 1.8e-07 31.3 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|313122390|ref|YP_004038277.1| - 0.076 13.5 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Amidohydro_2 PF04909.14 gi|313122391|ref|YP_004038278.1| - 8.4e-51 173.5 1.1 1.2e-50 172.9 1.1 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|313122391|ref|YP_004038278.1| - 0.0006 19.3 0.0 0.0052 16.2 0.0 2.1 1 1 0 1 1 1 1 TatD related DNase ECH_1 PF00378.20 gi|313122392|ref|YP_004038279.1| - 3.9e-59 200.0 0.3 4.3e-59 199.8 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313122392|ref|YP_004038279.1| - 4.6e-30 105.3 0.2 6.3e-30 104.8 0.2 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase HTH_10 PF04967.12 gi|313122393|ref|YP_004038280.1| - 4.8e-19 67.9 0.0 8.5e-19 67.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313122393|ref|YP_004038280.1| - 1.4e-09 38.0 0.9 1.9e-09 37.6 0.3 1.5 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|313122393|ref|YP_004038280.1| - 0.014 14.9 0.0 0.041 13.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|313122393|ref|YP_004038280.1| - 0.035 13.7 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313122393|ref|YP_004038280.1| - 0.058 13.2 0.5 0.24 11.2 0.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PaaA_PaaC PF05138.12 gi|313122394|ref|YP_004038281.1| - 2.3e-76 256.4 0.4 2.8e-76 256.1 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.11 gi|313122395|ref|YP_004038282.1| - 4.2e-21 75.0 0.1 5.2e-21 74.7 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|313122396|ref|YP_004038283.1| - 4.5e-57 193.2 0.7 6.1e-57 192.8 0.7 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|313122396|ref|YP_004038283.1| - 0.00011 22.0 0.2 0.00024 20.9 0.2 1.6 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.17 gi|313122396|ref|YP_004038283.1| - 0.0054 17.1 0.6 0.055 13.9 0.2 2.7 1 1 1 2 2 2 1 Rubrerythrin HEAT_2 PF13646.6 gi|313122396|ref|YP_004038283.1| - 0.015 15.7 0.3 0.69 10.3 0.1 2.8 2 1 0 2 2 2 0 HEAT repeats SAM_LFY PF01698.16 gi|313122396|ref|YP_004038283.1| - 0.035 14.1 1.0 0.059 13.3 0.1 1.8 2 0 0 2 2 2 0 Floricaula / Leafy protein SAM domain PerC PF06069.11 gi|313122396|ref|YP_004038283.1| - 0.091 13.0 0.6 0.46 10.8 0.3 2.3 2 1 1 3 3 3 0 PerC transcriptional activator FeS_assembly_P PF01883.19 gi|313122397|ref|YP_004038284.1| - 2.3e-20 72.6 0.2 3e-20 72.1 0.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein HMA PF00403.26 gi|313122397|ref|YP_004038284.1| - 0.18 12.2 0.1 2.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain Zn-ribbon_8 PF09723.10 gi|313122398|ref|YP_004038285.1| - 0.00024 21.2 3.0 0.031 14.4 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|313122398|ref|YP_004038285.1| - 0.0016 18.7 4.4 0.0019 18.5 4.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Toxin_16 PF07945.11 gi|313122398|ref|YP_004038285.1| - 0.025 14.5 1.4 0.025 14.5 1.4 1.5 2 0 0 2 2 2 0 Janus-atracotoxin TF_Zn_Ribbon PF08271.12 gi|313122398|ref|YP_004038285.1| - 0.025 14.1 6.0 0.25 10.9 6.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|313122398|ref|YP_004038285.1| - 0.13 12.9 2.7 0.17 12.5 2.7 1.2 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_9 PF14369.6 gi|313122398|ref|YP_004038285.1| - 0.34 11.2 0.2 0.34 11.2 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon Aldedh PF00171.22 gi|313122399|ref|YP_004038286.1| - 2.2e-177 590.2 0.0 2.5e-177 590.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.14 gi|313122399|ref|YP_004038286.1| - 0.06 13.8 0.0 0.23 11.9 0.0 2.0 1 1 0 1 1 1 0 YCII-related domain 4HBT PF03061.22 gi|313122400|ref|YP_004038287.1| - 2.4e-14 53.4 0.3 3.8e-14 52.8 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|313122400|ref|YP_004038287.1| - 5.1e-07 29.9 0.0 6.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|313122400|ref|YP_004038287.1| - 0.013 15.8 0.0 0.018 15.3 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily AMP-binding_C_2 PF14535.6 gi|313122401|ref|YP_004038288.1| - 2.2e-23 82.3 0.0 4.9e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313122401|ref|YP_004038288.1| - 6e-16 58.1 1.0 1.4e-15 56.9 1.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|313122401|ref|YP_004038288.1| - 0.021 13.7 0.0 0.043 12.7 0.0 1.4 1 0 0 1 1 1 0 GH3 auxin-responsive promoter ABC_tran PF00005.27 gi|313122402|ref|YP_004038289.1| - 6.4e-34 117.4 0.0 8.9e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122402|ref|YP_004038289.1| - 3.8e-09 36.8 0.4 0.0011 18.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313122402|ref|YP_004038289.1| - 0.012 15.8 0.6 0.12 12.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|313122402|ref|YP_004038289.1| - 0.015 15.6 0.5 0.024 15.0 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|313122402|ref|YP_004038289.1| - 0.017 14.8 0.1 0.033 13.9 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|313122402|ref|YP_004038289.1| - 0.023 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.19 gi|313122402|ref|YP_004038289.1| - 0.027 13.9 0.1 4.2 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 gi|313122402|ref|YP_004038289.1| - 0.034 13.3 0.1 0.051 12.8 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|313122402|ref|YP_004038289.1| - 0.044 13.3 0.2 0.071 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|313122402|ref|YP_004038289.1| - 0.059 13.9 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313122402|ref|YP_004038289.1| - 0.069 12.9 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|313122402|ref|YP_004038289.1| - 0.12 12.5 0.2 0.32 11.1 0.0 1.7 2 1 1 3 3 3 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|313122402|ref|YP_004038289.1| - 0.12 12.0 0.3 0.21 11.2 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|313122402|ref|YP_004038289.1| - 0.14 12.1 0.5 0.31 10.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|313122402|ref|YP_004038289.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122402|ref|YP_004038289.1| - 0.15 11.8 1.0 0.19 11.4 1.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313122402|ref|YP_004038289.1| - 0.17 12.3 0.1 0.49 10.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|313122402|ref|YP_004038289.1| - 0.19 12.0 0.3 1.4 9.2 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|313122403|ref|YP_004038290.1| - 1.8e-28 99.8 0.0 2.3e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|313122403|ref|YP_004038290.1| - 3.9e-08 33.0 0.0 8.9e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|313122403|ref|YP_004038290.1| - 0.00016 21.6 0.1 0.025 14.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|313122403|ref|YP_004038290.1| - 0.00019 21.2 0.1 0.0003 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313122403|ref|YP_004038290.1| - 0.00057 19.2 0.0 0.00086 18.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.6 gi|313122403|ref|YP_004038290.1| - 0.00094 19.7 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313122403|ref|YP_004038290.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|313122403|ref|YP_004038290.1| - 0.098 12.7 0.4 0.19 11.8 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|313122403|ref|YP_004038290.1| - 0.14 11.6 0.2 0.29 10.5 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|313122403|ref|YP_004038290.1| - 0.14 11.8 0.1 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|313122403|ref|YP_004038290.1| - 0.16 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|313122403|ref|YP_004038290.1| - 0.31 10.7 0.0 0.36 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|313122404|ref|YP_004038291.1| - 3.1e-84 282.3 86.8 4.6e-48 163.7 40.5 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|313122405|ref|YP_004038292.1| - 2.3e-70 237.9 4.5 2.8e-70 237.7 4.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|313122405|ref|YP_004038292.1| - 9.2e-34 117.0 0.2 1.1e-33 116.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|313122405|ref|YP_004038292.1| - 3.8e-15 55.9 0.0 5.2e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.13 gi|313122405|ref|YP_004038292.1| - 0.028 14.4 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family MaoC_dehydratas PF01575.19 gi|313122406|ref|YP_004038293.1| - 2.5e-19 69.0 0.1 3.2e-19 68.7 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313122406|ref|YP_004038293.1| - 0.0044 17.2 0.3 0.014 15.6 0.3 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313122407|ref|YP_004038294.1| - 6e-13 49.0 1.5 1.1e-12 48.1 1.5 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|313122407|ref|YP_004038294.1| - 1e-07 32.2 0.0 1.3e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|313122407|ref|YP_004038294.1| - 0.0044 17.3 0.6 0.0056 17.0 0.6 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.6 gi|313122407|ref|YP_004038294.1| - 0.0097 15.2 0.1 0.016 14.5 0.1 1.3 1 0 0 1 1 1 1 Polyketide synthase dehydratase AMP-binding_C_2 PF14535.6 gi|313122408|ref|YP_004038295.1| - 1.8e-22 79.5 0.0 4.3e-22 78.2 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313122408|ref|YP_004038295.1| - 5e-18 64.9 0.2 1.5e-17 63.4 0.2 1.7 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|313122408|ref|YP_004038295.1| - 0.0025 16.9 0.0 0.1 11.6 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE 3HCDH_N PF02737.18 gi|313122409|ref|YP_004038296.1| - 4.8e-64 215.5 2.3 7.4e-64 214.9 2.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|313122409|ref|YP_004038296.1| - 3.2e-32 111.0 0.3 1.1e-31 109.3 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|313122409|ref|YP_004038296.1| - 4.7e-06 26.7 0.1 8.5e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|313122409|ref|YP_004038296.1| - 3.7e-05 23.4 0.2 5.9e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|313122409|ref|YP_004038296.1| - 0.00013 22.2 3.6 0.00033 20.8 3.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|313122409|ref|YP_004038296.1| - 0.00068 20.2 2.2 0.034 14.7 2.2 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HisG PF01634.18 gi|313122409|ref|YP_004038296.1| - 0.02 14.9 1.1 0.028 14.4 0.4 1.6 2 0 0 2 2 2 0 ATP phosphoribosyltransferase AlaDh_PNT_C PF01262.21 gi|313122409|ref|YP_004038296.1| - 0.029 13.6 0.5 0.11 11.8 1.2 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|313122409|ref|YP_004038296.1| - 0.13 12.5 1.1 0.2 11.9 0.2 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF3618 PF12277.8 gi|313122409|ref|YP_004038296.1| - 0.21 11.9 1.5 19 5.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) ECH_1 PF00378.20 gi|313122410|ref|YP_004038297.1| - 5.5e-65 219.2 0.1 6.2e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313122410|ref|YP_004038297.1| - 4.3e-36 125.1 0.1 1.8e-30 106.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NTP_transf_5 PF14907.6 gi|313122410|ref|YP_004038297.1| - 0.062 12.9 0.3 0.43 10.1 0.1 2.0 1 1 0 2 2 2 0 Uncharacterised nucleotidyltransferase PrgH PF09480.10 gi|313122410|ref|YP_004038297.1| - 0.12 11.7 0.1 0.16 11.3 0.1 1.1 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) MmlI PF09448.10 gi|313122412|ref|YP_004038299.1| - 5.6e-16 59.0 0.5 7.9e-15 55.3 0.5 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|313122412|ref|YP_004038299.1| - 8.5e-14 52.5 1.9 2.1e-13 51.2 1.9 1.6 1 1 0 1 1 1 1 EthD domain Dabb PF07876.12 gi|313122412|ref|YP_004038299.1| - 0.027 15.1 0.1 0.038 14.6 0.1 1.3 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain Ald_deCOase PF11266.8 gi|313122412|ref|YP_004038299.1| - 0.11 12.2 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Long-chain fatty aldehyde decarbonylase HD PF01966.22 gi|313122414|ref|YP_004038301.1| - 3.1e-09 37.1 0.0 4.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 HD domain MmlI PF09448.10 gi|313122415|ref|YP_004038302.1| - 0.083 13.4 0.0 0.091 13.2 0.0 1.0 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase zinc-ribbons_6 PF07191.12 gi|313122416|ref|YP_004038303.1| - 0.0052 16.7 0.4 0.0082 16.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbons zf-ribbon_3 PF13248.6 gi|313122416|ref|YP_004038303.1| - 0.016 14.6 1.5 3 7.4 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|313122416|ref|YP_004038303.1| - 0.033 14.2 2.2 0.13 12.3 2.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|313122416|ref|YP_004038303.1| - 0.051 13.1 2.5 4.3 6.9 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|313122416|ref|YP_004038303.1| - 0.052 13.6 1.5 2 8.6 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain PADR1 PF08063.12 gi|313122416|ref|YP_004038303.1| - 0.076 12.8 4.4 2.8 7.8 0.5 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain Zn-ribbon_8 PF09723.10 gi|313122416|ref|YP_004038303.1| - 0.13 12.4 4.8 3.7 7.7 0.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|313122416|ref|YP_004038303.1| - 0.14 12.3 1.0 0.14 12.3 1.0 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.19 gi|313122416|ref|YP_004038303.1| - 0.16 11.8 4.1 1.4 8.8 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_3 PF13878.6 gi|313122416|ref|YP_004038303.1| - 0.61 10.0 2.9 5.6 6.9 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NTP_transferase PF00483.23 gi|313122418|ref|YP_004038305.1| - 5.7e-42 144.0 0.0 8.9e-42 143.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122418|ref|YP_004038305.1| - 2.2e-15 57.4 0.8 4e-15 56.5 0.8 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|313122418|ref|YP_004038305.1| - 3.8e-11 42.2 14.3 0.01 15.6 0.2 4.9 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|313122418|ref|YP_004038305.1| - 3.7e-07 30.1 0.1 6.8e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|313122418|ref|YP_004038305.1| - 0.011 16.0 0.5 0.031 14.6 0.5 1.7 1 0 0 1 1 1 0 Polymer-forming cytoskeletal CTP_transf_3 PF02348.19 gi|313122418|ref|YP_004038305.1| - 0.026 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Fucokinase PF07959.12 gi|313122418|ref|YP_004038305.1| - 0.28 10.1 0.0 0.62 8.9 0.0 1.5 1 1 0 1 1 1 0 L-fucokinase HTH_20 PF12840.7 gi|313122419|ref|YP_004038306.1| - 6.5e-09 35.7 0.1 1.1e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313122419|ref|YP_004038306.1| - 1.2e-08 34.8 0.0 2.1e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313122419|ref|YP_004038306.1| - 3.9e-07 29.8 0.0 7.1e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313122419|ref|YP_004038306.1| - 5.7e-07 29.3 0.1 8.8e-07 28.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313122419|ref|YP_004038306.1| - 9.7e-06 25.3 0.0 1.7e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313122419|ref|YP_004038306.1| - 2.3e-05 24.1 0.0 3.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313122419|ref|YP_004038306.1| - 4.4e-05 23.0 0.0 7.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|313122419|ref|YP_004038306.1| - 5.5e-05 22.8 0.0 9.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|313122419|ref|YP_004038306.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|313122419|ref|YP_004038306.1| - 0.00019 21.2 0.3 0.00044 20.0 0.3 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|313122419|ref|YP_004038306.1| - 0.00057 19.8 0.0 0.00096 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|313122419|ref|YP_004038306.1| - 0.00082 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|313122419|ref|YP_004038306.1| - 0.0017 18.0 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|313122419|ref|YP_004038306.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|313122419|ref|YP_004038306.1| - 0.0037 17.6 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator FUR PF01475.19 gi|313122419|ref|YP_004038306.1| - 0.0047 17.1 0.0 0.0078 16.4 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_27 PF13463.6 gi|313122419|ref|YP_004038306.1| - 0.0062 17.0 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|313122419|ref|YP_004038306.1| - 0.0098 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|313122419|ref|YP_004038306.1| - 0.01 15.9 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Fe_dep_repress PF01325.19 gi|313122419|ref|YP_004038306.1| - 0.011 15.9 0.0 0.029 14.6 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|313122419|ref|YP_004038306.1| - 0.019 15.1 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|313122419|ref|YP_004038306.1| - 0.02 14.7 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|313122419|ref|YP_004038306.1| - 0.023 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|313122419|ref|YP_004038306.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF4140 PF13600.6 gi|313122419|ref|YP_004038306.1| - 0.025 15.0 0.0 0.047 14.1 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Mga PF05043.13 gi|313122419|ref|YP_004038306.1| - 0.042 14.4 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313122419|ref|YP_004038306.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|313122419|ref|YP_004038306.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain SIS PF01380.22 gi|313122420|ref|YP_004038307.1| - 4e-55 185.2 0.5 3.7e-28 98.0 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|313122420|ref|YP_004038307.1| - 2.3e-20 73.1 0.0 5.8e-20 71.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|313122420|ref|YP_004038307.1| - 8.5e-17 61.2 0.0 3.7e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|313122420|ref|YP_004038307.1| - 0.00023 20.2 0.0 0.00039 19.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|313122420|ref|YP_004038307.1| - 0.00042 20.3 0.9 0.087 12.8 0.1 2.8 2 1 0 3 3 3 2 SIS domain Hydrolase PF00702.26 gi|313122420|ref|YP_004038307.1| - 0.045 14.0 0.1 0.56 10.5 0.1 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase NTP_transferase PF00483.23 gi|313122421|ref|YP_004038308.1| - 4.7e-34 118.1 0.0 5.9e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122421|ref|YP_004038308.1| - 3.2e-18 66.6 0.1 5.5e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|313122421|ref|YP_004038308.1| - 1.3e-13 50.1 18.0 3.1e-05 23.5 0.8 4.8 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313122421|ref|YP_004038308.1| - 9.7e-11 41.2 17.4 1.3e-07 31.2 1.4 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|313122421|ref|YP_004038308.1| - 1.3e-05 25.1 0.1 2.6e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|313122421|ref|YP_004038308.1| - 0.05 12.6 0.8 0.22 10.4 0.1 2.4 3 0 0 3 3 3 0 L-fucokinase CTP_transf_3 PF02348.19 gi|313122421|ref|YP_004038308.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase FA_desaturase PF00487.24 gi|313122422|ref|YP_004038309.1| - 0.007 16.2 0.0 0.0077 16.1 0.0 1.1 1 0 0 1 1 1 1 Fatty acid desaturase GreA_GreB_N PF03449.15 gi|313122422|ref|YP_004038309.1| - 0.027 14.6 1.4 0.05 13.8 1.4 1.5 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal YwiC PF14256.6 gi|313122422|ref|YP_004038309.1| - 0.036 14.4 0.1 0.058 13.7 0.1 1.3 1 0 0 1 1 1 0 YwiC-like protein HTH_20 PF12840.7 gi|313122423|ref|YP_004038310.1| - 0.00045 20.2 0.0 0.43 10.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|313122423|ref|YP_004038310.1| - 0.00071 19.4 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family FA_desaturase PF00487.24 gi|313122423|ref|YP_004038310.1| - 0.17 11.7 2.0 0.23 11.2 2.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase PadR PF03551.14 gi|313122424|ref|YP_004038311.1| - 1.8e-13 50.2 0.2 2.2e-13 50.0 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|313122424|ref|YP_004038311.1| - 0.00025 20.8 0.0 0.0003 20.5 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|313122424|ref|YP_004038311.1| - 0.0063 16.3 0.0 0.0069 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|313122424|ref|YP_004038311.1| - 0.021 15.0 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.19 gi|313122424|ref|YP_004038311.1| - 0.046 13.9 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.6 gi|313122424|ref|YP_004038311.1| - 0.059 13.4 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|313122424|ref|YP_004038311.1| - 0.065 13.7 0.0 0.086 13.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Epimerase_2 PF02350.19 gi|313122426|ref|YP_004038313.1| - 3.9e-110 368.0 0.0 4.6e-110 367.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|313122426|ref|YP_004038313.1| - 0.021 14.8 0.0 0.088 12.8 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|313122426|ref|YP_004038313.1| - 0.17 11.9 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like UDPG_MGDP_dh_N PF03721.14 gi|313122427|ref|YP_004038314.1| - 8.7e-51 172.2 0.0 1.6e-50 171.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|313122427|ref|YP_004038314.1| - 1.3e-22 79.8 0.0 2.2e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|313122427|ref|YP_004038314.1| - 4.3e-20 72.1 0.9 1.3e-18 67.3 0.1 3.2 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|313122427|ref|YP_004038314.1| - 7.8e-07 29.6 0.3 0.46 11.1 0.0 3.8 3 1 1 4 4 4 3 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|313122427|ref|YP_004038314.1| - 2e-05 24.8 0.0 4.9e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313122427|ref|YP_004038314.1| - 6.3e-05 22.4 0.0 0.021 14.2 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|313122427|ref|YP_004038314.1| - 0.00019 21.5 0.0 0.0032 17.5 0.0 2.4 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|313122427|ref|YP_004038314.1| - 0.00037 20.7 0.3 0.0078 16.5 0.0 2.9 2 1 1 3 3 3 1 TrkA-N domain 3HCDH_N PF02737.18 gi|313122427|ref|YP_004038314.1| - 0.00053 19.9 0.0 0.00098 19.1 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313122427|ref|YP_004038314.1| - 0.00071 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NTP_transferase PF00483.23 gi|313122429|ref|YP_004038316.1| - 6e-40 137.4 0.0 7.3e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122429|ref|YP_004038316.1| - 2.4e-17 63.8 0.0 3e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|313122429|ref|YP_004038316.1| - 8.9e-08 32.1 0.0 3.3e-07 30.3 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.16 gi|313122430|ref|YP_004038317.1| - 8.1e-32 109.8 0.0 1.4e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|313122430|ref|YP_004038317.1| - 1.6e-20 73.4 0.0 3e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|313122430|ref|YP_004038317.1| - 8.2e-17 61.7 0.2 2.8e-16 60.0 0.2 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|313122430|ref|YP_004038317.1| - 6.5e-15 55.1 1.1 1.1e-14 54.4 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|313122430|ref|YP_004038317.1| - 0.012 15.8 1.5 0.092 12.9 0.2 2.4 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain HalOD1 PF18545.1 gi|313122431|ref|YP_004038318.1| - 1.8e-23 82.6 0.2 2.2e-23 82.3 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 YdjM PF04307.14 gi|313122432|ref|YP_004038319.1| - 3.7e-08 32.9 5.7 6.2e-08 32.1 5.7 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PsbX PF06596.11 gi|313122432|ref|YP_004038319.1| - 0.034 14.2 2.9 0.034 14.2 2.9 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DUF1616 PF07760.11 gi|313122432|ref|YP_004038319.1| - 0.036 13.5 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) Zn_dep_PLPC PF00882.18 gi|313122432|ref|YP_004038319.1| - 0.058 13.4 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C Sulfatase PF00884.23 gi|313122433|ref|YP_004038320.1| - 7.5e-22 78.1 0.3 1e-21 77.7 0.3 1.2 1 0 0 1 1 1 1 Sulfatase DUF560 PF04575.13 gi|313122433|ref|YP_004038320.1| - 0.094 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF560) Glyco_trans_1_4 PF13692.6 gi|313122434|ref|YP_004038321.1| - 1.6e-26 93.3 0.2 4.2e-26 92.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|313122434|ref|YP_004038321.1| - 7.1e-25 87.5 0.0 1.2e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313122434|ref|YP_004038321.1| - 1.2e-18 67.7 1.6 2.3e-18 66.7 1.6 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313122434|ref|YP_004038321.1| - 1.2e-16 61.6 6.4 1.2e-16 61.6 6.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|313122434|ref|YP_004038321.1| - 1.7e-08 34.8 0.0 4.8e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1697 PF08002.11 gi|313122434|ref|YP_004038321.1| - 0.012 16.0 0.0 0.036 14.5 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1697) Methyltransf_11 PF08241.12 gi|313122435|ref|YP_004038322.1| - 8.7e-07 29.5 0.0 1.9e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313122435|ref|YP_004038322.1| - 3.5e-05 24.4 0.0 9.4e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Glyco_hydro_88 PF07470.13 gi|313122435|ref|YP_004038322.1| - 0.023 13.8 1.2 1.3 8.0 0.3 2.6 2 1 1 3 3 3 0 Glycosyl Hydrolase Family 88 Sulfatase PF00884.23 gi|313122436|ref|YP_004038323.1| - 8.2e-38 130.5 3.1 1e-37 130.2 0.4 1.9 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.22 gi|313122436|ref|YP_004038323.1| - 0.00034 20.3 1.6 0.023 14.3 1.6 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|313122436|ref|YP_004038323.1| - 0.022 14.1 0.1 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily GSDH PF07995.11 gi|313122437|ref|YP_004038324.1| - 2.9e-48 164.9 0.0 4.9e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Big_9 PF17963.1 gi|313122437|ref|YP_004038324.1| - 9.4e-29 100.0 57.1 4.4e-16 59.4 16.3 10.2 7 2 2 9 9 9 3 Bacterial Ig domain Cadherin_4 PF17803.1 gi|313122437|ref|YP_004038324.1| - 2.6e-15 56.8 42.4 2.4e-10 40.9 11.2 9.8 7 2 2 9 9 9 3 Bacterial cadherin-like domain PKD PF00801.20 gi|313122437|ref|YP_004038324.1| - 1.9e-12 46.8 3.2 1.9e-12 46.8 3.2 5.6 5 0 0 5 5 5 1 PKD domain Cadherin_5 PF17892.1 gi|313122437|ref|YP_004038324.1| - 2.9e-10 40.0 19.8 6.9e-07 29.2 7.9 6.9 8 0 0 8 8 8 3 Cadherin-like domain Cadherin_3 PF16184.5 gi|313122437|ref|YP_004038324.1| - 0.00026 20.9 5.2 0.85 9.6 0.1 4.4 3 1 0 3 3 3 2 Cadherin-like PGF-CTERM PF18204.1 gi|313122437|ref|YP_004038324.1| - 0.046 13.7 2.9 0.12 12.4 2.9 1.8 1 0 0 1 1 1 0 PGF-CTERM motif DUF5122 PF17164.4 gi|313122437|ref|YP_004038324.1| - 0.17 12.2 0.1 0.17 12.2 0.1 5.7 5 1 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller ASH PF15780.5 gi|313122437|ref|YP_004038324.1| - 3.5 7.9 6.4 1 9.6 0.4 3.2 4 0 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF3244 PF11589.8 gi|313122438|ref|YP_004038325.1| - 0.043 13.9 1.0 0.39 10.8 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3244) GIDE PF12483.8 gi|313122439|ref|YP_004038326.1| - 9.2e-05 21.9 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 E3 Ubiquitin ligase DUF2207 PF09972.9 gi|313122439|ref|YP_004038326.1| - 0.15 10.8 0.0 0.8 8.4 0.0 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Cdc6_C PF09079.11 gi|313122440|ref|YP_004038327.1| - 6.2e-19 67.8 0.1 1.4e-18 66.6 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122440|ref|YP_004038327.1| - 6.5e-12 45.9 0.0 1.9e-11 44.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|313122440|ref|YP_004038327.1| - 2e-11 44.5 1.8 4.4e-11 43.5 0.2 2.3 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|313122440|ref|YP_004038327.1| - 3.1e-05 24.0 0.0 5.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|313122440|ref|YP_004038327.1| - 9.8e-05 21.6 0.0 0.00023 20.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|313122440|ref|YP_004038327.1| - 0.00035 19.9 0.0 0.0006 19.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|313122440|ref|YP_004038327.1| - 0.00037 20.9 0.0 0.00097 19.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|313122440|ref|YP_004038327.1| - 0.0025 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|313122440|ref|YP_004038327.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|313122440|ref|YP_004038327.1| - 0.011 15.5 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase TniB PF05621.11 gi|313122440|ref|YP_004038327.1| - 0.011 15.1 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein AAA_30 PF13604.6 gi|313122440|ref|YP_004038327.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|313122440|ref|YP_004038327.1| - 0.021 15.2 0.1 0.046 14.1 0.1 1.8 1 1 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|313122440|ref|YP_004038327.1| - 0.025 14.6 0.2 0.19 11.7 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|313122440|ref|YP_004038327.1| - 0.026 13.4 0.1 0.39 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|313122440|ref|YP_004038327.1| - 0.027 15.0 0.0 0.12 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|313122440|ref|YP_004038327.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|313122440|ref|YP_004038327.1| - 0.11 11.7 0.1 5.2 6.2 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain PIF1 PF05970.14 gi|313122440|ref|YP_004038327.1| - 0.12 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Sigma54_activat PF00158.26 gi|313122440|ref|YP_004038327.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|313122440|ref|YP_004038327.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|313122440|ref|YP_004038327.1| - 0.17 11.7 0.0 0.34 10.7 0.0 1.5 2 0 0 2 2 1 0 Bacterial dnaA protein TrwB_AAD_bind PF10412.9 gi|313122440|ref|YP_004038327.1| - 0.18 10.6 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HTH_32 PF13565.6 gi|313122441|ref|YP_004038328.1| - 3.6e-15 56.3 0.7 6e-15 55.6 0.7 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|313122441|ref|YP_004038328.1| - 5.6e-11 42.4 0.0 2.8e-10 40.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|313122441|ref|YP_004038328.1| - 1.4e-10 41.0 0.0 4.5e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|313122441|ref|YP_004038328.1| - 7.9e-09 35.1 0.0 1.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|313122441|ref|YP_004038328.1| - 1.1e-06 28.2 0.2 6.2e-06 25.8 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|313122441|ref|YP_004038328.1| - 0.00026 21.2 0.0 0.00078 19.7 0.0 1.8 2 0 0 2 2 2 1 Transposase HTH_7 PF02796.15 gi|313122441|ref|YP_004038328.1| - 0.0016 18.5 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 gi|313122441|ref|YP_004038328.1| - 0.0022 17.7 0.0 0.0049 16.6 0.0 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain LZ_Tnp_IS481 PF13011.6 gi|313122441|ref|YP_004038328.1| - 0.0037 17.7 0.0 0.007 16.9 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_1_2 PF13022.6 gi|313122441|ref|YP_004038328.1| - 0.034 14.3 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Sigma70_r4 PF04545.16 gi|313122441|ref|YP_004038328.1| - 0.042 13.4 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 MerR_1 PF13411.6 gi|313122441|ref|YP_004038328.1| - 0.045 13.9 0.1 0.14 12.3 0.1 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein CENP-B_N PF04218.13 gi|313122441|ref|YP_004038328.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HBS1_N PF08938.10 gi|313122441|ref|YP_004038328.1| - 0.15 12.4 3.8 0.36 11.2 0.9 2.5 2 1 0 2 2 2 0 HBS1 N-terminus zf-HC2 PF13490.6 gi|313122441|ref|YP_004038328.1| - 0.6 10.4 0.2 0.6 10.4 0.2 3.0 3 0 0 3 3 3 0 Putative zinc-finger HypA PF01155.19 gi|313122442|ref|YP_004038329.1| - 0.021 14.9 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SCAB-ABD PF16711.5 gi|313122442|ref|YP_004038329.1| - 0.072 13.0 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein ZapB PF06005.12 gi|313122442|ref|YP_004038329.1| - 0.099 13.1 0.5 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Cell division protein ZapB PknG_rubred PF16919.5 gi|313122442|ref|YP_004038329.1| - 0.24 11.5 3.1 4.6 7.4 3.1 2.1 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain AAA_23 PF13476.6 gi|313122443|ref|YP_004038330.1| - 3.3e-10 40.8 17.9 3.3e-10 40.8 17.9 4.9 1 1 2 4 4 3 1 AAA domain AAA_15 PF13175.6 gi|313122443|ref|YP_004038330.1| - 1.4e-05 25.0 1.5 0.0008 19.2 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Spc7 PF08317.11 gi|313122443|ref|YP_004038330.1| - 1.7e-05 23.8 62.7 0.051 12.5 21.3 4.4 2 2 2 4 4 4 4 Spc7 kinetochore protein DUF4407 PF14362.6 gi|313122443|ref|YP_004038330.1| - 3.8e-05 23.2 42.9 0.011 15.1 1.6 3.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|313122443|ref|YP_004038330.1| - 9.9e-05 22.7 64.3 0.0071 16.6 16.2 4.3 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) NPV_P10 PF05531.12 gi|313122443|ref|YP_004038330.1| - 0.00024 21.5 32.5 0.26 11.8 0.2 6.9 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|313122443|ref|YP_004038330.1| - 0.00077 18.3 37.1 0.0025 16.6 12.9 2.5 2 1 0 2 2 2 2 AAA domain Baculo_PEP_C PF04513.12 gi|313122443|ref|YP_004038330.1| - 0.00098 19.2 20.6 1.2 9.1 2.4 5.5 3 2 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus HrpB7 PF09486.10 gi|313122443|ref|YP_004038330.1| - 0.0025 18.2 8.1 0.0025 18.2 8.1 5.6 2 2 1 3 3 2 2 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.9 gi|313122443|ref|YP_004038330.1| - 0.0038 16.4 47.6 0.28 10.2 13.8 4.3 1 1 2 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|313122443|ref|YP_004038330.1| - 0.0041 16.5 52.7 0.067 12.5 14.4 4.7 2 2 3 5 5 5 1 Growth-arrest specific micro-tubule binding HemX PF04375.14 gi|313122443|ref|YP_004038330.1| - 0.0045 16.3 33.2 0.024 14.0 4.3 4.2 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase CENP-F_leu_zip PF10473.9 gi|313122443|ref|YP_004038330.1| - 0.0051 16.8 16.9 0.0051 16.8 16.9 5.2 2 2 2 4 4 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlxA PF14282.6 gi|313122443|ref|YP_004038330.1| - 0.0058 16.6 35.9 0.2 11.7 1.7 5.0 2 2 3 5 5 5 3 FlxA-like protein DHR10 PF18595.1 gi|313122443|ref|YP_004038330.1| - 0.0059 16.7 71.3 0.025 14.6 6.3 5.3 3 2 1 4 4 4 2 Designed helical repeat protein 10 domain Rab5-bind PF09311.11 gi|313122443|ref|YP_004038330.1| - 0.006 16.0 4.4 0.006 16.0 4.4 4.6 2 2 1 4 4 4 1 Rabaptin-like protein HsbA PF12296.8 gi|313122443|ref|YP_004038330.1| - 0.0062 17.0 1.1 0.053 14.0 0.2 2.8 2 0 0 2 2 2 1 Hydrophobic surface binding protein A MAD PF05557.13 gi|313122443|ref|YP_004038330.1| - 0.01 14.3 56.4 0.0036 15.7 21.7 2.3 2 1 0 2 2 2 0 Mitotic checkpoint protein DUF4200 PF13863.6 gi|313122443|ref|YP_004038330.1| - 0.01 16.2 61.6 0.02 15.3 18.8 5.9 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) CCDC-167 PF15188.6 gi|313122443|ref|YP_004038330.1| - 0.017 15.4 6.7 0.017 15.4 6.7 7.0 3 2 3 6 6 5 0 Coiled-coil domain-containing protein 167 BLOC1_2 PF10046.9 gi|313122443|ref|YP_004038330.1| - 0.021 15.1 47.4 0.029 14.7 1.8 6.8 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.21 gi|313122443|ref|YP_004038330.1| - 0.021 15.3 47.7 0.27 11.8 7.6 5.2 3 1 1 4 4 4 0 Spectrin repeat kleA_kleC PF17383.2 gi|313122443|ref|YP_004038330.1| - 0.026 14.9 1.0 0.026 14.9 1.0 6.3 3 2 5 8 8 7 0 Uncharacterized KorC regulated protein A Fzo_mitofusin PF04799.13 gi|313122443|ref|YP_004038330.1| - 0.031 13.8 37.4 0.11 12.1 1.9 6.1 2 2 3 6 6 6 0 fzo-like conserved region Val_tRNA-synt_C PF10458.9 gi|313122443|ref|YP_004038330.1| - 0.04 14.2 0.1 0.04 14.2 0.1 7.4 5 2 2 7 7 6 0 Valyl tRNA synthetase tRNA binding arm DUF1664 PF07889.12 gi|313122443|ref|YP_004038330.1| - 0.043 13.8 38.3 0.72 9.9 4.3 5.9 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|313122443|ref|YP_004038330.1| - 0.048 14.1 55.0 0.13 12.7 22.2 3.9 1 1 2 3 3 3 0 Fez1 DUF3584 PF12128.8 gi|313122443|ref|YP_004038330.1| - 0.06 10.9 56.6 0.98 6.9 37.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) TMF_TATA_bd PF12325.8 gi|313122443|ref|YP_004038330.1| - 0.079 13.2 70.9 0.74 10.0 3.2 5.3 2 2 3 5 5 5 0 TATA element modulatory factor 1 TATA binding Laminin_II PF06009.12 gi|313122443|ref|YP_004038330.1| - 0.082 12.9 32.2 0.23 11.5 7.2 5.6 3 2 2 6 6 5 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|313122443|ref|YP_004038330.1| - 0.093 12.8 60.5 2.1 8.4 4.6 5.7 3 2 0 4 4 4 0 TPR/MLP1/MLP2-like protein ERM PF00769.19 gi|313122443|ref|YP_004038330.1| - 0.12 12.2 60.6 0.87 9.4 31.7 3.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family FPP PF05911.11 gi|313122443|ref|YP_004038330.1| - 0.14 10.4 48.0 0.068 11.4 19.2 2.5 2 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil FliD_N PF02465.18 gi|313122443|ref|YP_004038330.1| - 0.14 12.9 18.3 3.3 8.5 0.1 6.1 4 3 1 5 5 3 0 Flagellar hook-associated protein 2 N-terminus COG2 PF06148.11 gi|313122443|ref|YP_004038330.1| - 0.16 12.0 36.8 0.44 10.6 4.7 6.2 2 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Seryl_tRNA_N PF02403.22 gi|313122443|ref|YP_004038330.1| - 0.19 12.0 56.3 0.64 10.3 5.1 5.6 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|313122443|ref|YP_004038330.1| - 0.34 11.4 85.3 0.73 10.4 15.3 6.2 1 1 3 5 5 5 0 Apg6 coiled-coil region DUF5082 PF16888.5 gi|313122443|ref|YP_004038330.1| - 0.35 11.1 49.1 0.14 12.5 9.5 7.1 2 2 5 7 7 7 0 Domain of unknown function (DUF5082) Exonuc_VII_L PF02601.15 gi|313122443|ref|YP_004038330.1| - 0.41 10.2 32.8 3.4 7.1 12.3 3.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit FapA PF03961.13 gi|313122443|ref|YP_004038330.1| - 0.5 8.9 42.9 0.31 9.6 1.3 4.2 1 1 2 4 4 4 0 Flagellar Assembly Protein A WEMBL PF05701.11 gi|313122443|ref|YP_004038330.1| - 0.59 8.8 47.4 0.098 11.3 16.6 2.5 2 1 0 2 2 2 0 Weak chloroplast movement under blue light Taxilin PF09728.9 gi|313122443|ref|YP_004038330.1| - 0.67 9.1 45.2 1.7 7.8 19.5 2.5 2 0 0 2 2 2 0 Myosin-like coiled-coil protein Lectin_N PF03954.14 gi|313122443|ref|YP_004038330.1| - 0.87 9.3 19.6 6.2 6.6 1.6 4.6 3 1 1 4 4 4 0 Hepatic lectin, N-terminal domain DASH_Dam1 PF08653.10 gi|313122443|ref|YP_004038330.1| - 0.99 9.3 27.2 0.94 9.3 0.4 7.2 6 1 0 7 7 6 0 DASH complex subunit Dam1 UPF0242 PF06785.11 gi|313122443|ref|YP_004038330.1| - 1.1 9.4 66.2 0.4 10.8 8.4 4.2 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus DASH_Spc19 PF08287.11 gi|313122443|ref|YP_004038330.1| - 1.2 9.0 52.6 5 7.0 6.8 5.1 1 1 2 3 3 2 0 Spc19 TACC_C PF05010.14 gi|313122443|ref|YP_004038330.1| - 1.4 8.7 45.2 0.16 11.7 10.8 4.4 2 2 2 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 gi|313122443|ref|YP_004038330.1| - 1.9 8.6 49.7 0.58 10.3 4.0 5.3 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein LPP PF04728.13 gi|313122443|ref|YP_004038330.1| - 3.1 8.3 22.7 0.91 10.0 1.1 7.2 5 2 3 8 8 8 0 Lipoprotein leucine-zipper DUF4201 PF13870.6 gi|313122443|ref|YP_004038330.1| - 3.1 7.5 54.3 0.013 15.2 18.2 5.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4201) DUF3450 PF11932.8 gi|313122443|ref|YP_004038330.1| - 3.1 7.0 58.0 1.1 8.5 15.5 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) Tropomyosin_1 PF12718.7 gi|313122443|ref|YP_004038330.1| - 3.3 7.8 79.9 7.3 6.7 29.9 5.0 1 1 3 4 4 4 0 Tropomyosin like ZapB PF06005.12 gi|313122443|ref|YP_004038330.1| - 5.2 7.6 70.4 0.068 13.6 12.4 7.8 4 3 2 6 6 5 0 Cell division protein ZapB WXG100 PF06013.12 gi|313122443|ref|YP_004038330.1| - 5.5 7.3 20.8 15 5.9 0.2 7.1 3 2 2 6 6 6 0 Proteins of 100 residues with WXG Fib_alpha PF08702.10 gi|313122443|ref|YP_004038330.1| - 5.8 7.1 36.0 3.1 8.0 2.2 4.7 3 1 0 4 4 4 0 Fibrinogen alpha/beta chain family OmpH PF03938.14 gi|313122443|ref|YP_004038330.1| - 6.1 7.2 49.2 9.8 6.5 0.7 5.0 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) ABC_tran_CTD PF16326.5 gi|313122443|ref|YP_004038330.1| - 6.3 7.1 73.8 0.34 11.2 8.7 7.3 3 2 1 5 5 5 0 ABC transporter C-terminal domain Baculo_F PF12259.8 gi|313122443|ref|YP_004038330.1| - 7.5 4.9 23.7 0.77 8.2 7.5 2.9 2 1 0 2 2 2 0 Baculovirus F protein PGF-CTERM PF18204.1 gi|313122444|ref|YP_004038331.1| - 4.9e-07 29.5 5.1 1e-06 28.5 5.1 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|313122444|ref|YP_004038331.1| - 0.0005 20.1 3.1 0.0005 20.1 3.1 2.3 3 0 0 3 3 3 1 Procyclic acidic repetitive protein (PARP) bMG6 PF17962.1 gi|313122444|ref|YP_004038331.1| - 0.00075 19.6 0.3 0.14 12.3 0.0 3.7 3 0 0 3 3 3 1 Bacterial macroglobulin domain 6 Abhydrolase_1 PF00561.20 gi|313122447|ref|YP_004038334.1| - 2.6e-25 89.6 0.3 5.2e-24 85.3 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122447|ref|YP_004038334.1| - 1e-21 78.6 3.4 1.3e-21 78.3 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313122447|ref|YP_004038334.1| - 5.9e-12 45.4 0.0 9e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|313122447|ref|YP_004038334.1| - 0.0078 15.7 0.1 0.096 12.1 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Thioesterase PF00975.20 gi|313122447|ref|YP_004038334.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DLH PF01738.18 gi|313122447|ref|YP_004038334.1| - 0.16 11.5 0.0 4.4 6.8 0.0 2.6 2 1 0 2 2 2 0 Dienelactone hydrolase family AAA_31 PF13614.6 gi|313122451|ref|YP_004038338.1| - 3.3e-35 121.6 0.0 4.2e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313122451|ref|YP_004038338.1| - 1.7e-17 63.7 0.0 2.2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|313122451|ref|YP_004038338.1| - 3.4e-10 39.8 0.2 5.5e-08 32.6 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|313122451|ref|YP_004038338.1| - 5.1e-07 29.2 1.3 9.2e-05 21.8 0.5 2.6 3 0 0 3 3 3 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|313122451|ref|YP_004038338.1| - 6.9e-06 25.5 0.1 0.00029 20.1 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|313122451|ref|YP_004038338.1| - 5.7e-05 22.7 0.2 0.001 18.6 0.3 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|313122451|ref|YP_004038338.1| - 0.00073 19.1 0.0 0.0022 17.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|313122451|ref|YP_004038338.1| - 0.013 14.8 0.1 0.024 13.9 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|313122451|ref|YP_004038338.1| - 0.019 14.8 0.1 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glyco_transf_4 PF13439.6 gi|313122451|ref|YP_004038338.1| - 0.044 13.8 0.1 0.12 12.4 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 AAA_25 PF13481.6 gi|313122451|ref|YP_004038338.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313122451|ref|YP_004038338.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Transglut_core PF01841.19 gi|313122452|ref|YP_004038339.1| - 6.9e-31 107.0 0.0 1.5e-30 105.9 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|313122452|ref|YP_004038339.1| - 7.3e-05 22.9 0.4 7.3e-05 22.9 0.4 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|313122452|ref|YP_004038339.1| - 0.0019 17.2 0.4 0.0033 16.4 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.6 gi|313122452|ref|YP_004038339.1| - 0.016 15.1 0.0 0.063 13.2 0.0 2.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily HLH PF00010.26 gi|313122453|ref|YP_004038340.1| - 0.022 14.7 0.2 7.6 6.6 0.1 2.3 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain DUF58 PF01882.18 gi|313122454|ref|YP_004038341.1| - 1.8e-16 60.2 1.6 3.4e-16 59.3 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|313122454|ref|YP_004038341.1| - 8.6e-09 35.6 2.5 0.002 18.4 0.0 2.9 2 0 0 2 2 2 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|313122454|ref|YP_004038341.1| - 0.0009 19.5 2.0 0.051 13.8 0.2 3.0 1 1 1 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|313122454|ref|YP_004038341.1| - 0.0084 16.4 0.0 0.02 15.2 0.0 1.6 1 0 0 1 1 1 1 CARDB Fn3-like PF14310.6 gi|313122454|ref|YP_004038341.1| - 0.015 15.4 0.6 7.5 6.7 0.0 3.1 3 0 0 3 3 3 0 Fibronectin type III-like domain Acetyltransf_3 PF13302.7 gi|313122456|ref|YP_004038343.1| - 5.1e-22 79.0 0.0 6.4e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313122456|ref|YP_004038343.1| - 1.9e-11 44.3 0.0 2.6e-11 43.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313122456|ref|YP_004038343.1| - 4.2e-08 33.4 0.0 5.3e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|313122456|ref|YP_004038343.1| - 1.9e-06 27.6 0.0 4.1e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313122456|ref|YP_004038343.1| - 0.038 13.9 0.0 0.089 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein Lys PF00062.20 gi|313122456|ref|YP_004038343.1| - 0.14 12.4 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family DUF4013 PF13197.6 gi|313122457|ref|YP_004038344.1| - 7.6e-39 133.2 17.2 7.6e-39 133.2 17.2 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Adeno_E3B PF03376.14 gi|313122457|ref|YP_004038344.1| - 1 9.7 12.8 2.4 8.4 0.0 3.5 3 0 0 3 3 3 0 Adenovirus E3B protein Man-6-P_recep PF02157.15 gi|313122457|ref|YP_004038344.1| - 1.1 8.2 3.8 0.22 10.6 0.1 1.6 2 0 0 2 2 2 0 Mannose-6-phosphate receptor Catalase-rel PF06628.12 gi|313122459|ref|YP_004038346.1| - 0.086 13.1 0.1 0.29 11.4 0.0 1.8 2 0 0 2 2 2 0 Catalase-related immune-responsive DUF2017 PF09438.10 gi|313122460|ref|YP_004038347.1| - 0.025 14.5 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) BAAT_C PF08840.11 gi|313122461|ref|YP_004038348.1| - 2.4e-39 135.5 0.0 5.4e-39 134.3 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.14 gi|313122461|ref|YP_004038348.1| - 4.9e-28 97.7 0.0 7.5e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region DLH PF01738.18 gi|313122461|ref|YP_004038348.1| - 0.0021 17.7 0.1 0.14 11.7 0.2 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family Chlorophyllase2 PF12740.7 gi|313122461|ref|YP_004038348.1| - 0.0063 15.5 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 gi|313122461|ref|YP_004038348.1| - 0.01 14.9 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase DUF5345 PF17280.2 gi|313122462|ref|YP_004038349.1| - 0.16 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5345) Rieske PF00355.26 gi|313122463|ref|YP_004038350.1| - 1.1e-09 38.1 0.1 1.5e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|313122463|ref|YP_004038350.1| - 0.0042 17.0 0.0 0.0055 16.6 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain GCD14_N PF14801.6 gi|313122463|ref|YP_004038350.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term Antifungal_pept PF11410.8 gi|313122463|ref|YP_004038350.1| - 0.14 12.1 1.4 0.32 10.9 1.4 1.5 1 0 0 1 1 1 0 Antifungal peptide SprT-like PF10263.9 gi|313122464|ref|YP_004038351.1| - 1.1e-06 28.4 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|313122464|ref|YP_004038351.1| - 0.005 17.0 1.4 0.74 10.1 0.1 2.8 2 1 1 3 3 3 2 Domain of unknown function (DUF4157) Na_Ca_ex PF01699.24 gi|313122465|ref|YP_004038352.1| - 1.7e-45 154.7 35.6 6.1e-24 84.7 13.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein FixQ PF05545.11 gi|313122465|ref|YP_004038352.1| - 0.39 10.7 0.0 0.39 10.7 0.0 3.1 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF4407 PF14362.6 gi|313122465|ref|YP_004038352.1| - 2.2 7.6 5.3 1.3 8.3 0.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) AAA_3 PF07726.11 gi|313122466|ref|YP_004038353.1| - 1.2e-64 216.0 0.0 1.7e-64 215.5 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313122466|ref|YP_004038353.1| - 4.9e-17 61.5 3.3 4.9e-17 61.5 3.3 2.2 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|313122466|ref|YP_004038353.1| - 1.7e-15 57.2 0.0 5.6e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313122466|ref|YP_004038353.1| - 1e-06 29.2 0.0 6.6e-06 26.6 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313122466|ref|YP_004038353.1| - 4.8e-05 23.1 0.0 0.00025 20.8 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|313122466|ref|YP_004038353.1| - 0.00082 18.5 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|313122466|ref|YP_004038353.1| - 0.022 14.5 0.0 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|313122466|ref|YP_004038353.1| - 0.039 13.3 0.1 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MR_MLE_C PF13378.6 gi|313122467|ref|YP_004038354.1| - 7.7e-48 162.9 0.4 1e-47 162.5 0.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313122467|ref|YP_004038354.1| - 9.5e-15 54.8 0.0 3.7e-13 49.7 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Creatininase PF02633.14 gi|313122468|ref|YP_004038355.1| - 2e-63 214.1 0.2 2.4e-63 213.8 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PRC PF05239.16 gi|313122469|ref|YP_004038356.1| - 1e-09 38.4 0.2 1.2e-09 38.1 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain PAS_3 PF08447.12 gi|313122471|ref|YP_004038358.1| - 6.8e-26 90.4 0.7 2.4e-13 50.1 0.0 3.9 5 0 0 5 5 4 2 PAS fold PAS_9 PF13426.7 gi|313122471|ref|YP_004038358.1| - 3.5e-18 65.8 0.2 6.5e-07 29.5 0.0 4.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|313122471|ref|YP_004038358.1| - 5.3e-18 65.1 3.9 3e-08 33.7 0.1 4.7 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|313122471|ref|YP_004038358.1| - 1.3e-17 64.4 0.2 5.2e-17 62.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313122471|ref|YP_004038358.1| - 1.7e-16 60.4 8.5 4.9e-07 30.0 0.1 5.3 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.24 gi|313122471|ref|YP_004038358.1| - 2.1e-16 60.1 0.0 9.3e-16 58.0 0.0 2.2 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|313122471|ref|YP_004038358.1| - 2e-12 46.9 5.9 3.1e-12 46.3 1.4 3.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|313122471|ref|YP_004038358.1| - 7e-12 45.8 1.3 2e-11 44.3 0.3 2.4 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|313122471|ref|YP_004038358.1| - 4e-11 42.7 0.0 4.1e-06 26.7 0.0 3.3 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|313122471|ref|YP_004038358.1| - 1.7e-07 31.7 0.1 1.6e-06 28.4 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 gi|313122471|ref|YP_004038358.1| - 9.6e-06 25.7 0.0 0.0034 17.5 0.0 2.7 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|313122471|ref|YP_004038358.1| - 0.0079 16.5 3.0 0.016 15.5 0.0 2.8 3 0 0 3 3 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.6 gi|313122471|ref|YP_004038358.1| - 0.0082 16.0 0.0 0.024 14.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3391 PF11871.8 gi|313122471|ref|YP_004038358.1| - 0.015 15.8 1.6 0.015 15.8 1.6 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) HATPase_c_2 PF13581.6 gi|313122471|ref|YP_004038358.1| - 0.027 14.4 0.3 0.23 11.4 0.0 2.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|313122471|ref|YP_004038358.1| - 0.45 10.7 5.0 13 6.0 0.0 4.8 4 1 1 5 5 5 0 PAS fold Spo0M PF07070.11 gi|313122472|ref|YP_004038359.1| - 1.8e-75 253.1 0.1 2.1e-75 252.9 0.1 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|313122472|ref|YP_004038359.1| - 0.07 13.6 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain HTH_IclR PF09339.10 gi|313122473|ref|YP_004038360.1| - 2.8e-05 23.8 0.0 6.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Binary_toxB PF03495.14 gi|313122473|ref|YP_004038360.1| - 0.00021 21.4 36.0 0.002 18.3 5.0 6.1 2 1 3 5 5 5 3 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain MarR_2 PF12802.7 gi|313122473|ref|YP_004038360.1| - 0.0038 17.1 0.1 0.0075 16.1 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313122473|ref|YP_004038360.1| - 0.02 14.7 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|313122473|ref|YP_004038360.1| - 0.039 13.9 0.1 0.073 13.1 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|313122473|ref|YP_004038360.1| - 0.044 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313122473|ref|YP_004038360.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF3489 PF11994.8 gi|313122473|ref|YP_004038360.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Aldo_ket_red PF00248.21 gi|313122474|ref|YP_004038361.1| - 5e-64 216.3 0.0 8.2e-63 212.3 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family SBP_bac_8 PF13416.6 gi|313122475|ref|YP_004038362.1| - 1e-43 150.2 0.1 1e-43 150.2 0.1 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein MCPsignal PF00015.21 gi|313122475|ref|YP_004038362.1| - 4.6e-42 143.7 53.2 7.9e-39 133.2 29.2 3.3 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_1 PF01547.25 gi|313122475|ref|YP_004038362.1| - 3e-32 112.8 1.2 6.2e-32 111.8 1.2 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HAMP PF00672.25 gi|313122475|ref|YP_004038362.1| - 1.3e-07 31.9 0.6 1.2e-05 25.6 0.1 3.6 2 1 0 2 2 2 1 HAMP domain EzrA PF06160.12 gi|313122475|ref|YP_004038362.1| - 3.1e-05 22.3 19.1 0.0017 16.7 9.7 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA SBP_bac_6 PF13343.6 gi|313122475|ref|YP_004038362.1| - 0.00017 21.1 0.0 0.28 10.6 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Mo25 PF08569.11 gi|313122475|ref|YP_004038362.1| - 0.0037 16.7 0.7 0.0062 15.9 0.0 1.7 2 0 0 2 2 2 1 Mo25-like DUF948 PF06103.11 gi|313122475|ref|YP_004038362.1| - 0.0064 16.7 38.9 0.13 12.5 3.8 6.2 2 1 2 5 5 4 2 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 gi|313122475|ref|YP_004038362.1| - 0.016 14.2 15.5 0.18 10.7 0.7 3.0 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Mod_r PF07200.13 gi|313122475|ref|YP_004038362.1| - 0.14 12.3 19.7 0.94 9.6 5.6 3.9 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.11 gi|313122475|ref|YP_004038362.1| - 0.23 10.3 28.0 0.96 8.3 6.4 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|313122475|ref|YP_004038362.1| - 0.38 10.8 27.6 0.6 10.1 1.4 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) TssO PF17561.2 gi|313122475|ref|YP_004038362.1| - 0.46 10.6 1.9 5.7 7.0 0.1 3.0 1 1 2 3 3 3 0 Type VI secretion system, TssO Laminin_II PF06009.12 gi|313122475|ref|YP_004038362.1| - 0.51 10.4 41.8 0.8 9.7 3.3 5.1 3 2 2 5 5 4 0 Laminin Domain II BLOC1_2 PF10046.9 gi|313122475|ref|YP_004038362.1| - 0.72 10.2 26.7 7.2 7.0 0.6 5.7 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad4 PF08650.10 gi|313122475|ref|YP_004038362.1| - 1.4 9.0 6.1 13 5.8 0.1 4.3 4 0 0 4 4 4 0 DASH complex subunit Dad4 BAR_2 PF10455.9 gi|313122475|ref|YP_004038362.1| - 2.1 7.4 15.8 1 8.4 2.5 2.6 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking TMPIT PF07851.13 gi|313122475|ref|YP_004038362.1| - 2.1 7.5 15.7 0.41 9.9 0.4 3.1 2 2 1 3 3 3 0 TMPIT-like protein DUF2009 PF09418.10 gi|313122475|ref|YP_004038362.1| - 2.3 7.2 6.8 0.61 9.1 3.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2009) YkyA PF10368.9 gi|313122475|ref|YP_004038362.1| - 2.9 7.5 30.3 1.2 8.7 9.8 3.9 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein Prominin PF05478.11 gi|313122475|ref|YP_004038362.1| - 3.3 5.5 14.7 0.63 7.9 10.4 1.8 1 1 1 2 2 2 0 Prominin Seryl_tRNA_N PF02403.22 gi|313122475|ref|YP_004038362.1| - 3.6 7.9 24.6 8.5 6.7 4.7 4.9 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain FlgN PF05130.12 gi|313122475|ref|YP_004038362.1| - 4.1 7.9 26.0 1.3 9.5 4.5 5.1 2 1 4 6 6 6 0 FlgN protein DUF4618 PF15397.6 gi|313122475|ref|YP_004038362.1| - 4.3 6.7 15.2 4.3 6.7 4.3 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4618) Filament PF00038.21 gi|313122475|ref|YP_004038362.1| - 4.7 6.7 29.1 0.94 9.0 2.4 2.9 3 0 0 3 3 3 0 Intermediate filament protein DUF4709 PF15821.5 gi|313122475|ref|YP_004038362.1| - 5 7.5 7.1 0.9 9.9 0.2 3.1 4 1 0 4 4 3 0 Domain of unknown function (DUF4709) DUF745 PF05335.13 gi|313122475|ref|YP_004038362.1| - 5.1 6.8 44.8 0.28 10.9 2.9 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF745) Baculo_F PF12259.8 gi|313122475|ref|YP_004038362.1| - 5.1 5.5 6.4 1.5 7.3 0.2 2.2 2 0 0 2 2 2 0 Baculovirus F protein Med9 PF07544.13 gi|313122475|ref|YP_004038362.1| - 5.3 7.2 7.4 9.2 6.4 0.0 3.8 3 2 1 4 4 3 0 RNA polymerase II transcription mediator complex subunit 9 Not3 PF04065.15 gi|313122475|ref|YP_004038362.1| - 5.4 6.4 17.5 5.6 6.3 2.7 2.5 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component FUSC PF04632.12 gi|313122475|ref|YP_004038362.1| - 7.1 5.0 19.6 0.23 9.9 6.3 2.3 1 1 1 2 2 2 0 Fusaric acid resistance protein family GM_CSF PF01109.17 gi|313122475|ref|YP_004038362.1| - 7.6 6.7 5.6 14 5.9 0.5 3.3 2 1 0 3 3 3 0 Granulocyte-macrophage colony-stimulating factor adh_short_C2 PF13561.6 gi|313122476|ref|YP_004038363.1| - 3.2e-63 213.4 3.5 3.8e-63 213.2 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313122476|ref|YP_004038363.1| - 2.1e-59 200.3 2.2 2.8e-59 199.9 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313122476|ref|YP_004038363.1| - 3.1e-15 56.6 0.3 4e-15 56.2 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313122476|ref|YP_004038363.1| - 2.7e-05 23.7 0.1 4.4e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|313122476|ref|YP_004038363.1| - 0.0057 15.8 0.1 0.01 14.9 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.19 gi|313122476|ref|YP_004038363.1| - 0.01 15.2 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 gi|313122476|ref|YP_004038363.1| - 0.014 14.8 0.1 0.023 14.1 0.1 1.5 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|313122476|ref|YP_004038363.1| - 0.048 13.6 0.4 0.095 12.6 0.4 1.5 1 0 0 1 1 1 0 NAD(P)H-binding VAPB_antitox PF02697.14 gi|313122477|ref|YP_004038364.1| - 1.4e-18 67.4 0.6 1.9e-18 67.0 0.6 1.2 1 0 0 1 1 1 1 Putative antitoxin DUF883 PF05957.13 gi|313122477|ref|YP_004038364.1| - 0.093 13.3 3.1 0.089 13.4 1.3 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN PF01850.21 gi|313122478|ref|YP_004038365.1| - 4.1e-11 43.5 0.0 5.4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|313122478|ref|YP_004038365.1| - 0.0013 19.4 0.1 0.0015 19.3 0.1 1.4 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|313122478|ref|YP_004038365.1| - 0.02 15.4 0.0 0.044 14.3 0.0 1.6 1 1 1 2 2 2 0 PIN domain Acyl-CoA_dh_1 PF00441.24 gi|313122479|ref|YP_004038366.1| - 5.4e-38 130.6 1.0 7.7e-38 130.0 1.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313122479|ref|YP_004038366.1| - 7.1e-20 71.0 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|313122479|ref|YP_004038366.1| - 1.3e-19 70.9 0.4 2.9e-19 69.8 0.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|313122479|ref|YP_004038366.1| - 1.7e-16 60.7 1.4 3.1e-16 59.8 1.4 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|313122479|ref|YP_004038366.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Subtilosin_A PF11420.8 gi|313122479|ref|YP_004038366.1| - 0.066 13.2 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 Bacteriocin subtilosin A APH PF01636.23 gi|313122480|ref|YP_004038367.1| - 2e-43 149.0 6.6 2.8e-43 148.6 6.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|313122480|ref|YP_004038367.1| - 8.3e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|313122480|ref|YP_004038367.1| - 0.03 13.2 0.0 0.046 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) ABC_tran PF00005.27 gi|313122481|ref|YP_004038368.1| - 1.3e-27 97.0 0.0 1.7e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122481|ref|YP_004038368.1| - 4.6e-15 56.2 0.0 7.2e-10 39.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|313122481|ref|YP_004038368.1| - 0.00052 19.8 0.0 0.27 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|313122481|ref|YP_004038368.1| - 0.013 16.0 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122481|ref|YP_004038368.1| - 0.024 14.4 0.6 0.072 12.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313122481|ref|YP_004038368.1| - 0.039 14.2 0.1 0.24 11.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313122481|ref|YP_004038368.1| - 0.046 14.1 0.0 0.25 11.8 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313122481|ref|YP_004038368.1| - 0.052 13.9 0.0 0.09 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|313122481|ref|YP_004038368.1| - 0.1 11.2 0.1 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313122481|ref|YP_004038368.1| - 0.1 12.4 0.3 0.2 11.5 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|313122481|ref|YP_004038368.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313122481|ref|YP_004038368.1| - 0.26 10.9 0.7 0.53 9.9 0.7 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|313122481|ref|YP_004038368.1| - 0.28 11.4 2.0 1.5 9.1 0.2 2.6 2 1 0 2 2 2 0 AAA domain PEP_hydrolase PF09370.10 gi|313122482|ref|YP_004038369.1| - 0.062 12.5 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Gaa1 PF04114.14 gi|313122482|ref|YP_004038369.1| - 0.63 9.0 10.8 1.2 8.0 10.8 1.4 1 0 0 1 1 1 0 Gaa1-like, GPI transamidase component Pox_A9 PF04835.12 gi|313122482|ref|YP_004038369.1| - 1.9 8.7 6.4 0.17 12.1 0.7 2.2 2 0 0 2 2 2 0 A9 protein conserved region HTH_Tnp_Tc3_2 PF01498.18 gi|313122483|ref|YP_004038370.1| - 0.00024 21.3 0.3 0.00051 20.2 0.3 1.5 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.6 gi|313122483|ref|YP_004038370.1| - 0.051 13.4 1.2 0.14 12.0 1.2 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|313122483|ref|YP_004038370.1| - 0.08 13.6 0.4 0.21 12.3 0.3 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|313122483|ref|YP_004038370.1| - 0.097 12.3 0.5 2.6 7.7 0.2 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Acyl-CoA_dh_1 PF00441.24 gi|313122484|ref|YP_004038371.1| - 3.5e-49 166.9 2.9 5.2e-49 166.3 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313122484|ref|YP_004038371.1| - 1.4e-31 109.5 0.2 3.6e-31 108.1 0.2 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313122484|ref|YP_004038371.1| - 9.9e-30 102.6 0.1 2.3e-29 101.4 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313122484|ref|YP_004038371.1| - 9.7e-25 87.4 8.7 1.7e-24 86.6 8.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|313122484|ref|YP_004038371.1| - 0.00049 19.8 4.7 0.0013 18.5 1.9 2.6 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.28 gi|313122485|ref|YP_004038372.1| - 8.3e-109 364.0 0.0 9.8e-109 363.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122485|ref|YP_004038372.1| - 1.3e-22 80.6 0.6 2.6e-22 79.6 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ADP_ribosyl_GH PF03747.14 gi|313122486|ref|YP_004038373.1| - 4.3e-63 213.8 0.3 5.2e-63 213.5 0.3 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Rick_17kDa_Anti PF05433.15 gi|313122486|ref|YP_004038373.1| - 0.016 15.1 6.3 0.19 11.6 2.2 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|313122486|ref|YP_004038373.1| - 0.031 14.0 3.7 0.52 10.1 0.8 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|313122486|ref|YP_004038373.1| - 0.29 11.2 3.9 1.2 9.1 0.9 2.3 2 0 0 2 2 2 0 Glycine zipper Bacteriocin_IIc PF10439.9 gi|313122486|ref|YP_004038373.1| - 2.2 8.4 5.3 6.3 7.0 1.2 2.5 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide NPP1 PF05630.11 gi|313122489|ref|YP_004038376.1| - 0.0096 16.1 0.4 0.019 15.1 0.4 1.4 1 0 0 1 1 1 1 Necrosis inducing protein (NPP1) TFIIE-A_C PF11521.8 gi|313122489|ref|YP_004038376.1| - 0.5 10.7 2.4 1.3 9.4 2.4 1.7 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha ADH_N PF08240.12 gi|313122490|ref|YP_004038377.1| - 4.9e-26 90.8 0.8 1e-25 89.7 0.8 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313122490|ref|YP_004038377.1| - 6.7e-22 77.9 1.4 1.1e-21 77.2 0.4 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|313122490|ref|YP_004038377.1| - 3.3e-05 23.3 0.5 5.5e-05 22.6 0.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|313122490|ref|YP_004038377.1| - 0.00058 20.9 0.0 0.0013 19.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|313122490|ref|YP_004038377.1| - 0.02 14.7 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|313122490|ref|YP_004038377.1| - 0.03 14.6 0.3 0.061 13.6 0.3 1.5 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_25 PF13649.6 gi|313122490|ref|YP_004038377.1| - 0.081 13.6 0.3 0.22 12.2 0.3 1.8 1 0 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|313122490|ref|YP_004038377.1| - 0.09 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 gi|313122490|ref|YP_004038377.1| - 0.12 13.1 0.3 0.36 11.5 0.1 1.9 2 0 0 2 2 2 0 Methyltransferase domain Spo7 PF03907.13 gi|313122491|ref|YP_004038378.1| - 0.13 11.8 0.3 0.15 11.5 0.3 1.0 1 0 0 1 1 1 0 Spo7-like protein DZR PF12773.7 gi|313122492|ref|YP_004038379.1| - 0.0087 16.1 0.5 0.012 15.6 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313122492|ref|YP_004038379.1| - 0.039 14.1 2.1 0.088 12.9 2.1 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|313122492|ref|YP_004038379.1| - 0.09 12.7 1.8 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|313122492|ref|YP_004038379.1| - 0.11 12.8 4.5 0.62 10.4 4.6 1.9 1 1 1 2 2 2 0 zinc-ribbon WCCH PF03716.14 gi|313122492|ref|YP_004038379.1| - 0.11 12.1 0.7 0.11 12.1 0.7 2.1 2 0 0 2 2 2 0 WCCH motif PMSR PF01625.21 gi|313122493|ref|YP_004038380.1| - 2.6e-68 229.0 0.5 3e-68 228.8 0.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|313122493|ref|YP_004038380.1| - 0.053 13.5 1.0 0.1 12.6 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) NUDIX PF00293.28 gi|313122494|ref|YP_004038381.1| - 0.0023 18.0 1.8 0.0027 17.7 0.6 1.6 1 1 1 2 2 2 1 NUDIX domain MFS_1 PF07690.16 gi|313122495|ref|YP_004038382.1| - 5.6e-41 140.6 67.6 1.2e-28 100.0 33.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|313122495|ref|YP_004038382.1| - 1.2e-05 24.1 31.3 0.00043 19.0 30.6 2.9 1 1 0 1 1 1 1 MFS/sugar transport protein OATP PF03137.20 gi|313122495|ref|YP_004038382.1| - 0.0042 15.4 1.2 0.0042 15.4 1.2 1.9 1 1 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family LacY_symp PF01306.19 gi|313122495|ref|YP_004038382.1| - 0.25 10.1 11.3 0.011 14.6 3.8 2.3 2 1 0 3 3 3 0 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|313122495|ref|YP_004038382.1| - 0.62 8.9 11.3 0.043 12.7 5.8 1.7 1 1 1 2 2 2 0 MFS_1 like family adh_short_C2 PF13561.6 gi|313122496|ref|YP_004038383.1| - 8e-45 153.2 0.0 1.2e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313122496|ref|YP_004038383.1| - 1.2e-38 132.5 0.0 1.5e-38 132.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313122496|ref|YP_004038383.1| - 2e-08 34.4 0.0 4.1e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|313122496|ref|YP_004038383.1| - 0.11 12.4 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TetR_C_6 PF13977.6 gi|313122498|ref|YP_004038385.1| - 2.4e-13 50.3 0.9 3.8e-13 49.7 0.9 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|313122498|ref|YP_004038385.1| - 3.4e-13 49.1 0.2 7.2e-13 48.1 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_25 PF17933.1 gi|313122498|ref|YP_004038385.1| - 0.00015 22.0 0.0 0.00035 20.9 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|313122498|ref|YP_004038385.1| - 0.0003 21.0 0.1 0.00054 20.2 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|313122498|ref|YP_004038385.1| - 0.00039 20.7 1.1 0.00067 20.0 1.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|313122498|ref|YP_004038385.1| - 0.00067 19.7 0.0 0.00089 19.3 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|313122498|ref|YP_004038385.1| - 0.0033 17.5 0.1 0.0084 16.1 0.1 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|313122498|ref|YP_004038385.1| - 0.028 14.4 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MarR_2 PF12802.7 gi|313122498|ref|YP_004038385.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|313122498|ref|YP_004038385.1| - 0.065 13.1 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.6 gi|313122498|ref|YP_004038385.1| - 0.065 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_C_17 PF17922.1 gi|313122498|ref|YP_004038385.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 gi|313122498|ref|YP_004038385.1| - 0.14 12.0 0.1 0.36 10.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family UPF0122 PF04297.14 gi|313122498|ref|YP_004038385.1| - 0.21 11.9 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MatE PF01554.18 gi|313122499|ref|YP_004038386.1| - 1e-62 210.5 36.7 4.1e-38 130.6 10.8 2.5 3 0 0 3 3 3 2 MatE Pmp3 PF01679.17 gi|313122499|ref|YP_004038386.1| - 0.031 14.5 1.0 0.64 10.3 0.1 3.3 2 0 0 2 2 2 0 Proteolipid membrane potential modulator Glyco_hydro_43 PF04616.14 gi|313122499|ref|YP_004038386.1| - 0.043 13.1 0.0 0.061 12.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 Polysacc_synt_C PF14667.6 gi|313122499|ref|YP_004038386.1| - 0.62 10.1 49.5 0.05 13.7 21.7 4.9 3 2 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Peptidase_M50 PF02163.22 gi|313122500|ref|YP_004038387.1| - 1.4e-13 50.7 7.5 3.4e-07 29.8 0.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 RHH_5 PF07878.11 gi|313122501|ref|YP_004038388.1| - 0.013 15.3 0.1 0.013 15.3 0.1 1.5 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Cadherin-like PF12733.7 gi|313122502|ref|YP_004038389.1| - 0.32 11.6 2.5 0.42 11.2 1.0 1.7 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain TrmB PF01978.19 gi|313122503|ref|YP_004038390.1| - 1.9e-18 66.1 0.1 2.9e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|313122503|ref|YP_004038390.1| - 0.002 18.2 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|313122503|ref|YP_004038390.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Blo-t-5 PF11642.8 gi|313122503|ref|YP_004038390.1| - 0.099 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Mite allergen Blo t 5 SusD_RagB PF07980.11 gi|313122503|ref|YP_004038390.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 SusD family Multi_Drug_Res PF00893.19 gi|313122504|ref|YP_004038391.1| - 3.7e-26 91.6 4.0 5e-26 91.2 4.0 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|313122504|ref|YP_004038391.1| - 0.0052 17.0 7.2 0.0052 17.0 7.2 1.7 1 1 1 2 2 2 2 EamA-like transporter family DUF772 PF05598.11 gi|313122505|ref|YP_004038392.1| - 5.5e-09 35.9 0.4 1.4e-07 31.4 0.0 2.5 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|313122505|ref|YP_004038392.1| - 8.1e-08 32.2 0.2 1.5e-07 31.3 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain PhageP22-tail PF09251.10 gi|313122505|ref|YP_004038392.1| - 0.004 15.6 0.0 0.0082 14.6 0.0 1.4 2 0 0 2 2 2 1 Salmonella phage P22 tail-spike DDE_Tnp_1_2 PF13586.6 gi|313122505|ref|YP_004038392.1| - 0.013 15.9 0.1 0.053 13.9 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 gi|313122508|ref|YP_004038395.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313122508|ref|YP_004038395.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313122508|ref|YP_004038395.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313122508|ref|YP_004038395.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313122508|ref|YP_004038395.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family DUF3792 PF12670.7 gi|313122510|ref|YP_004038397.1| - 0.0093 16.1 3.6 0.011 15.9 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) RseC_MucC PF04246.12 gi|313122510|ref|YP_004038397.1| - 0.088 12.8 1.9 0.092 12.7 1.9 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3043 PF11241.8 gi|313122510|ref|YP_004038397.1| - 0.15 12.1 1.3 0.16 12.0 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) FeoB_C PF07664.12 gi|313122510|ref|YP_004038397.1| - 0.23 11.2 5.3 0.46 10.2 0.5 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus LapA_dom PF06305.11 gi|313122510|ref|YP_004038397.1| - 0.58 10.0 4.9 0.48 10.3 2.1 2.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Myco_arth_vir_N PF09610.10 gi|313122510|ref|YP_004038397.1| - 8.1 6.6 12.8 31 4.7 0.4 3.7 3 1 1 4 4 4 0 Mycoplasma virulence signal region (Myco_arth_vir_N) SBP_bac_5 PF00496.22 gi|313122512|ref|YP_004038399.1| - 3.3e-65 220.5 0.8 3.9e-65 220.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|313122513|ref|YP_004038400.1| - 8.7e-38 129.9 10.7 8.7e-38 129.9 10.7 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GTP_EFTU_D4 PF14578.6 gi|313122513|ref|YP_004038400.1| - 0.15 12.0 0.3 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Elongation factor Tu domain 4 Renin_r PF07850.14 gi|313122513|ref|YP_004038400.1| - 0.38 11.4 0.1 0.38 11.4 0.1 2.7 3 1 0 3 3 3 0 Renin receptor-like protein DUF3561 PF12084.8 gi|313122513|ref|YP_004038400.1| - 0.41 10.7 5.0 0.45 10.6 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3561) BPD_transp_1 PF00528.22 gi|313122514|ref|YP_004038401.1| - 5.2e-31 107.8 9.7 5.2e-31 107.8 9.7 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313122514|ref|YP_004038401.1| - 5e-06 26.4 0.2 5e-06 26.4 0.2 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|313122515|ref|YP_004038402.1| - 1.6e-27 96.7 0.0 2.2e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122515|ref|YP_004038402.1| - 3.1e-15 56.4 0.3 6e-15 55.5 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122515|ref|YP_004038402.1| - 4.6e-07 30.0 0.7 0.00012 22.0 0.7 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313122515|ref|YP_004038402.1| - 1.5e-05 25.3 0.2 0.0014 19.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313122515|ref|YP_004038402.1| - 0.00065 20.1 1.1 0.0026 18.2 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|313122515|ref|YP_004038402.1| - 0.0091 15.5 0.2 0.22 11.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313122515|ref|YP_004038402.1| - 0.013 15.2 0.1 0.026 14.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HetR_C PF18460.1 gi|313122515|ref|YP_004038402.1| - 0.031 14.2 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain AAA_7 PF12775.7 gi|313122515|ref|YP_004038402.1| - 0.091 12.3 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|313122515|ref|YP_004038402.1| - 0.21 10.9 0.2 0.5 9.7 0.0 1.7 2 0 0 2 2 2 0 AIG1 family ABC_tran PF00005.27 gi|313122516|ref|YP_004038403.1| - 4.8e-30 104.9 0.0 6.5e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122516|ref|YP_004038403.1| - 7.6e-20 71.2 1.3 1.5e-19 70.3 1.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122516|ref|YP_004038403.1| - 5.2e-08 33.1 0.9 7.1e-06 26.0 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313122516|ref|YP_004038403.1| - 5.3e-07 30.2 0.7 1.4e-06 28.8 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122516|ref|YP_004038403.1| - 1.5e-05 25.3 0.0 3.3e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313122516|ref|YP_004038403.1| - 0.0023 17.9 0.0 0.0052 16.7 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 gi|313122516|ref|YP_004038403.1| - 0.0044 17.0 0.4 0.2 11.7 0.2 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313122516|ref|YP_004038403.1| - 0.013 15.9 0.1 0.11 12.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313122516|ref|YP_004038403.1| - 0.02 14.6 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|313122516|ref|YP_004038403.1| - 0.032 14.6 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|313122516|ref|YP_004038403.1| - 0.033 14.3 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|313122516|ref|YP_004038403.1| - 0.034 14.4 0.1 0.1 12.8 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313122516|ref|YP_004038403.1| - 0.035 13.7 0.1 0.075 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|313122516|ref|YP_004038403.1| - 0.039 13.6 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 gi|313122516|ref|YP_004038403.1| - 0.054 12.9 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|313122516|ref|YP_004038403.1| - 0.055 13.2 0.3 1.9 8.2 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|313122516|ref|YP_004038403.1| - 0.057 12.7 0.1 0.11 11.7 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|313122516|ref|YP_004038403.1| - 0.088 13.0 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|313122516|ref|YP_004038403.1| - 0.09 11.4 0.0 0.3 9.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313122516|ref|YP_004038403.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|313122516|ref|YP_004038403.1| - 0.12 13.0 0.0 0.21 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|313122516|ref|YP_004038403.1| - 0.13 12.1 0.2 0.24 11.3 0.2 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|313122516|ref|YP_004038403.1| - 0.15 11.9 0.2 0.29 11.0 0.2 1.5 1 0 0 1 1 1 0 NACHT domain CoaE PF01121.20 gi|313122516|ref|YP_004038403.1| - 0.19 11.4 0.1 2.1 8.0 0.1 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_7 PF12775.7 gi|313122516|ref|YP_004038403.1| - 0.21 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|313122516|ref|YP_004038403.1| - 0.21 10.7 0.1 0.35 10.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Pyr_redox_2 PF07992.14 gi|313122517|ref|YP_004038404.1| - 5.1e-11 42.4 1.1 1.2e-05 24.8 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313122517|ref|YP_004038404.1| - 2.8e-07 30.0 0.3 0.0041 16.3 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|313122517|ref|YP_004038404.1| - 2.7e-06 27.5 0.2 5.9e-06 26.4 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|313122517|ref|YP_004038404.1| - 3.2e-06 26.6 0.1 0.093 12.0 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313122517|ref|YP_004038404.1| - 9.3e-06 24.6 0.0 0.00011 21.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|313122517|ref|YP_004038404.1| - 7.5e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|313122517|ref|YP_004038404.1| - 0.00031 20.1 0.0 0.0011 18.2 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|313122517|ref|YP_004038404.1| - 0.00086 18.8 0.2 0.0018 17.7 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|313122517|ref|YP_004038404.1| - 0.0017 18.0 1.2 0.013 15.1 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313122517|ref|YP_004038404.1| - 0.0056 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Thi4 family 2-ph_phosp PF04029.14 gi|313122517|ref|YP_004038404.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase NAD_binding_9 PF13454.6 gi|313122517|ref|YP_004038404.1| - 0.046 13.7 0.8 1.5 8.8 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|313122517|ref|YP_004038404.1| - 0.09 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|313122517|ref|YP_004038404.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|313122518|ref|YP_004038405.1| - 1.2e-16 60.8 1.7 2.7e-16 59.6 1.7 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313122518|ref|YP_004038405.1| - 0.019 13.8 0.0 0.031 13.1 0.0 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) DUF3234 PF11572.8 gi|313122518|ref|YP_004038405.1| - 0.14 12.4 0.2 4.2 7.6 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3234) Usp PF00582.26 gi|313122519|ref|YP_004038406.1| - 3.5e-07 30.8 0.6 6.4e-07 30.0 0.6 1.4 1 1 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.27 gi|313122520|ref|YP_004038407.1| - 1.5e-29 103.2 0.0 2.1e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122520|ref|YP_004038407.1| - 3.9e-14 52.9 0.2 6.9e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|313122520|ref|YP_004038407.1| - 0.00093 19.5 0.7 0.017 15.4 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|313122520|ref|YP_004038407.1| - 0.015 15.1 0.4 4 7.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|313122520|ref|YP_004038407.1| - 0.017 14.3 0.1 0.027 13.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 gi|313122520|ref|YP_004038407.1| - 0.062 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|313122520|ref|YP_004038407.1| - 0.067 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|313122520|ref|YP_004038407.1| - 0.077 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|313122520|ref|YP_004038407.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|313122520|ref|YP_004038407.1| - 0.14 12.5 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313122520|ref|YP_004038407.1| - 0.16 12.4 0.2 0.34 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|313122520|ref|YP_004038407.1| - 0.22 10.8 0.0 0.67 9.2 0.0 1.7 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.27 gi|313122521|ref|YP_004038408.1| - 1.3e-23 84.0 0.0 1.8e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122521|ref|YP_004038408.1| - 4.2e-20 72.0 0.2 8.1e-20 71.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122521|ref|YP_004038408.1| - 8.4e-10 38.9 0.1 9.7e-07 28.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313122521|ref|YP_004038408.1| - 0.00094 18.7 1.0 1 8.8 0.1 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313122521|ref|YP_004038408.1| - 0.0016 18.8 0.2 0.0034 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122521|ref|YP_004038408.1| - 0.0027 18.0 0.0 0.011 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|313122521|ref|YP_004038408.1| - 0.012 15.3 0.2 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|313122521|ref|YP_004038408.1| - 0.026 14.3 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122521|ref|YP_004038408.1| - 0.028 14.9 0.0 0.044 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313122521|ref|YP_004038408.1| - 0.069 13.2 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|313122521|ref|YP_004038408.1| - 0.088 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|313122521|ref|YP_004038408.1| - 0.098 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|313122521|ref|YP_004038408.1| - 0.15 11.4 0.1 0.33 10.3 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|313122521|ref|YP_004038408.1| - 0.57 9.9 0.0 0.57 9.9 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.22 gi|313122522|ref|YP_004038409.1| - 2.3e-23 82.9 17.1 2.3e-23 82.9 17.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313122523|ref|YP_004038410.1| - 6.9e-36 123.7 11.5 6.9e-36 123.7 11.5 2.0 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Fumarate_red_C PF02300.17 gi|313122523|ref|YP_004038410.1| - 0.81 9.8 0.0 0.81 9.8 0.0 3.1 3 1 0 4 4 4 0 Fumarate reductase subunit C SBP_bac_5 PF00496.22 gi|313122524|ref|YP_004038411.1| - 9.8e-38 130.1 5.6 1.5e-37 129.5 5.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313122524|ref|YP_004038411.1| - 0.12 12.2 1.1 0.2 11.5 1.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF565 PF04483.12 gi|313122525|ref|YP_004038412.1| - 0.081 13.5 0.5 0.71 10.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF565) HEAT_2 PF13646.6 gi|313122526|ref|YP_004038413.1| - 3.5e-16 59.4 18.9 1.5e-06 28.5 0.3 4.3 2 2 3 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|313122526|ref|YP_004038413.1| - 9.9e-11 41.0 7.5 0.52 10.7 0.1 5.8 5 0 0 5 5 5 4 HEAT repeat Cnd1 PF12717.7 gi|313122526|ref|YP_004038413.1| - 2.4e-08 34.2 0.7 4.5e-05 23.6 0.4 2.6 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|313122526|ref|YP_004038413.1| - 4.9e-06 25.4 2.6 0.00055 18.6 0.6 2.1 1 1 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.6 gi|313122526|ref|YP_004038413.1| - 1.1e-05 25.8 16.3 0.19 12.3 0.6 4.7 3 2 1 4 4 4 4 HEAT-like repeat Nipped-B_C PF12830.7 gi|313122526|ref|YP_004038413.1| - 0.00013 21.9 2.6 0.026 14.5 0.2 3.1 3 0 0 3 3 3 1 Sister chromatid cohesion C-terminus HEAT_PBS PF03130.16 gi|313122526|ref|YP_004038413.1| - 0.00092 19.7 9.9 1.2 10.0 0.1 6.1 6 2 0 6 6 6 2 PBS lyase HEAT-like repeat TINF2_N PF14973.6 gi|313122526|ref|YP_004038413.1| - 0.058 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Arm PF00514.23 gi|313122526|ref|YP_004038413.1| - 0.093 12.8 4.1 0.11 12.6 0.0 3.1 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat DUF5578 PF17741.1 gi|313122526|ref|YP_004038413.1| - 0.16 11.3 0.1 0.4 10.1 0.0 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5578) MR_MLE_C PF13378.6 gi|313122527|ref|YP_004038414.1| - 2.7e-60 203.6 0.0 3.4e-60 203.3 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313122527|ref|YP_004038414.1| - 7.8e-27 93.8 0.0 1.6e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NanE PF04131.14 gi|313122527|ref|YP_004038414.1| - 0.046 12.9 0.1 0.086 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4777 PF16007.5 gi|313122527|ref|YP_004038414.1| - 0.16 12.2 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) IclR PF01614.18 gi|313122528|ref|YP_004038415.1| - 2.5e-23 82.3 0.0 3.7e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313122528|ref|YP_004038415.1| - 7.9e-13 48.0 0.3 9.6e-12 44.5 0.2 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313122528|ref|YP_004038415.1| - 1e-06 28.7 0.0 2.4e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|313122528|ref|YP_004038415.1| - 1.7e-06 27.8 0.0 7.5e-06 25.7 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313122528|ref|YP_004038415.1| - 1.9e-06 27.7 0.0 4.3e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|313122528|ref|YP_004038415.1| - 2.9e-05 23.9 0.0 5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313122528|ref|YP_004038415.1| - 9.3e-05 21.9 0.0 0.0002 20.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313122528|ref|YP_004038415.1| - 0.00042 20.2 0.0 0.00098 19.0 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|313122528|ref|YP_004038415.1| - 0.0033 17.6 0.0 0.0064 16.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|313122528|ref|YP_004038415.1| - 0.0096 16.3 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|313122528|ref|YP_004038415.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain z-alpha PF02295.17 gi|313122528|ref|YP_004038415.1| - 0.022 14.8 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_23 PF13384.6 gi|313122528|ref|YP_004038415.1| - 0.023 14.5 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.6 gi|313122528|ref|YP_004038415.1| - 0.036 14.1 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|313122528|ref|YP_004038415.1| - 0.051 13.3 0.1 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 gi|313122529|ref|YP_004038416.1| - 1.2e-09 38.4 0.0 2.8e-07 30.8 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|313122529|ref|YP_004038416.1| - 5.8e-05 23.0 0.0 0.00012 21.9 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|313122529|ref|YP_004038416.1| - 0.00074 19.9 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313122529|ref|YP_004038416.1| - 0.0067 16.4 0.0 0.027 14.4 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Phenol_hyd_sub PF06099.11 gi|313122530|ref|YP_004038417.1| - 0.036 14.1 0.5 0.069 13.2 0.1 1.6 1 1 1 2 2 2 0 Phenol hydroxylase subunit Ferritin PF00210.24 gi|313122531|ref|YP_004038418.1| - 1.4e-30 106.1 6.8 1.6e-30 105.9 6.8 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2959 PF11172.8 gi|313122531|ref|YP_004038418.1| - 0.023 14.8 0.4 0.072 13.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Osmo_CC PF08946.10 gi|313122531|ref|YP_004038418.1| - 0.089 13.1 0.5 0.089 13.1 0.5 3.3 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DUF1451 PF07295.11 gi|313122531|ref|YP_004038418.1| - 0.82 9.7 5.4 3.3 7.7 0.9 2.3 1 1 1 2 2 2 0 Zinc-ribbon containing domain PAS_9 PF13426.7 gi|313122535|ref|YP_004038422.1| - 2.8e-44 149.6 0.5 1e-19 70.7 0.1 3.6 3 0 0 3 3 3 3 PAS domain BAT PF15915.5 gi|313122535|ref|YP_004038422.1| - 1.9e-40 138.3 4.1 5.8e-40 136.7 4.1 1.9 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|313122535|ref|YP_004038422.1| - 1.6e-35 121.5 1.9 2.5e-16 59.7 0.1 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|313122535|ref|YP_004038422.1| - 1.5e-31 108.9 8.5 7.6e-14 51.9 0.1 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|313122535|ref|YP_004038422.1| - 4.1e-25 87.9 0.4 8.1e-11 42.1 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|313122535|ref|YP_004038422.1| - 1.7e-23 82.2 0.1 4.1e-08 33.1 0.0 3.7 3 0 0 3 3 3 3 PAS domain HTH_10 PF04967.12 gi|313122535|ref|YP_004038422.1| - 4.2e-18 64.9 0.0 8.8e-18 63.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122535|ref|YP_004038422.1| - 8.3e-17 61.8 0.6 5.4e-16 59.2 0.2 2.5 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|313122535|ref|YP_004038422.1| - 1.1e-06 29.3 0.0 3.2e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|313122535|ref|YP_004038422.1| - 4.1e-05 23.9 0.0 8.9e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|313122535|ref|YP_004038422.1| - 0.00014 22.0 1.4 0.29 11.3 0.0 3.6 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.6 gi|313122535|ref|YP_004038422.1| - 0.0031 18.1 0.0 2 9.0 0.0 3.2 2 0 0 2 2 2 1 PAS domain Sigma70_r4 PF04545.16 gi|313122535|ref|YP_004038422.1| - 0.021 14.3 2.3 0.14 11.7 0.0 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 PAS_12 PF18095.1 gi|313122535|ref|YP_004038422.1| - 0.03 14.0 0.0 3.3 7.3 0.0 2.7 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HTH_22 PF13309.6 gi|313122535|ref|YP_004038422.1| - 0.14 12.3 0.0 0.42 10.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain FAD_binding_4 PF01565.23 gi|313122536|ref|YP_004038423.1| - 1.8e-37 128.2 3.1 2.8e-37 127.6 3.1 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|313122536|ref|YP_004038423.1| - 5.3e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 Berberine and berberine like DUF4968 PF16338.5 gi|313122537|ref|YP_004038424.1| - 5.7e-07 29.8 0.8 5.1 7.5 0.0 5.0 1 1 4 5 5 5 3 Domain of unknown function (DUF4968) HtaA PF04213.13 gi|313122537|ref|YP_004038424.1| - 0.00098 19.6 0.2 1 9.8 0.0 2.7 1 1 1 2 2 2 2 Htaa DUF2807 PF10988.8 gi|313122537|ref|YP_004038424.1| - 0.0067 16.2 2.4 1.2 8.8 0.1 2.9 1 1 1 2 2 2 2 Putative auto-transporter adhesin, head GIN domain DUF945 PF06097.11 gi|313122537|ref|YP_004038424.1| - 0.0079 15.3 0.9 0.046 12.8 0.9 2.0 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF945) FecR PF04773.13 gi|313122537|ref|YP_004038424.1| - 0.019 15.6 0.0 42 4.9 0.1 3.8 1 1 3 4 4 4 0 FecR protein PCC_BT PF18140.1 gi|313122537|ref|YP_004038424.1| - 0.11 12.9 1.1 21 5.5 1.1 3.6 1 1 0 1 1 1 0 Propionyl-coenzyme A carboxylase BT domain HSP20 PF00011.21 gi|313122537|ref|YP_004038424.1| - 0.13 12.4 6.8 0.5 10.5 0.8 3.3 1 1 3 4 4 4 0 Hsp20/alpha crystallin family CS PF04969.16 gi|313122537|ref|YP_004038424.1| - 0.17 12.9 1.4 12 7.0 0.1 3.4 1 1 1 2 2 2 0 CS domain MinE PF03776.14 gi|313122537|ref|YP_004038424.1| - 0.65 10.0 4.8 10 6.2 0.1 3.9 2 2 0 3 3 3 0 Septum formation topological specificity factor MinE GNAT_like PF18407.1 gi|313122537|ref|YP_004038424.1| - 2.2 8.7 4.7 15 6.0 0.1 3.8 3 2 0 3 3 3 0 GCN5-related N-acetyltransferase like domain Big_3 PF07523.12 gi|313122537|ref|YP_004038424.1| - 3.4 8.0 9.2 0.64 10.4 0.2 3.4 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) NmrA PF05368.13 gi|313122538|ref|YP_004038425.1| - 4.1e-13 49.4 0.0 1.2e-12 47.9 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|313122538|ref|YP_004038425.1| - 4.7e-11 42.9 0.0 1.5e-10 41.3 0.0 1.8 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|313122538|ref|YP_004038425.1| - 2.9e-09 36.8 0.0 9.5e-08 31.8 0.0 2.1 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313122538|ref|YP_004038425.1| - 0.0001 21.4 0.0 0.00018 20.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family HTH_IclR PF09339.10 gi|313122539|ref|YP_004038426.1| - 1.4e-05 24.8 0.0 3.9e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313122539|ref|YP_004038426.1| - 3.7e-05 23.5 0.0 0.00011 22.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|313122539|ref|YP_004038426.1| - 0.00024 21.5 0.0 0.00072 20.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|313122539|ref|YP_004038426.1| - 0.00089 19.1 0.1 0.002 18.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313122539|ref|YP_004038426.1| - 0.0029 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family NBP1 PF08537.10 gi|313122539|ref|YP_004038426.1| - 0.013 14.9 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 HTH_20 PF12840.7 gi|313122539|ref|YP_004038426.1| - 0.017 15.2 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|313122539|ref|YP_004038426.1| - 0.017 14.6 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|313122539|ref|YP_004038426.1| - 0.018 14.7 0.0 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|313122539|ref|YP_004038426.1| - 0.024 14.5 0.0 0.059 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4363 PF14276.6 gi|313122539|ref|YP_004038426.1| - 0.024 14.7 0.4 0.074 13.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) Glyco_hydro_15 PF00723.21 gi|313122539|ref|YP_004038426.1| - 0.072 11.8 0.1 0.099 11.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 15 SesA PF17107.5 gi|313122539|ref|YP_004038426.1| - 0.099 12.8 0.4 0.19 11.9 0.2 1.5 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Rx_N PF18052.1 gi|313122539|ref|YP_004038426.1| - 0.13 12.5 0.8 0.26 11.6 0.8 1.4 1 0 0 1 1 1 0 Rx N-terminal domain TctB PF07331.11 gi|313122540|ref|YP_004038427.1| - 0.12 12.7 12.4 0.58 10.4 12.8 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family ADH_zinc_N_2 PF13602.6 gi|313122541|ref|YP_004038428.1| - 7.3e-27 95.0 0.0 1.2e-26 94.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|313122541|ref|YP_004038428.1| - 1.6e-17 63.7 0.0 5.1e-17 62.1 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313122541|ref|YP_004038428.1| - 3.9e-08 33.1 0.0 2.4e-07 30.6 0.0 2.2 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain DUF2855 PF11017.8 gi|313122541|ref|YP_004038428.1| - 0.004 16.9 0.0 0.006 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2855) ADH_N_2 PF16884.5 gi|313122541|ref|YP_004038428.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.9 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase BAT PF15915.5 gi|313122543|ref|YP_004038430.1| - 1.1e-40 139.1 7.4 1.1e-40 139.1 7.4 2.9 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|313122543|ref|YP_004038430.1| - 2.4e-19 68.9 0.0 5.7e-19 67.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122543|ref|YP_004038430.1| - 3.9e-18 66.1 1.5 3.8e-11 43.4 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|313122543|ref|YP_004038430.1| - 1.3e-17 64.0 4.7 8.4e-10 38.9 0.2 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|313122543|ref|YP_004038430.1| - 4.5e-17 62.1 0.5 6.2e-13 48.7 0.1 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313122543|ref|YP_004038430.1| - 9.9e-16 57.9 0.0 9.3e-13 48.3 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|313122543|ref|YP_004038430.1| - 8e-12 44.9 0.4 6.8e-07 29.2 0.1 3.5 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|313122543|ref|YP_004038430.1| - 4.4e-06 26.8 4.5 0.0036 17.4 0.1 3.7 4 1 0 4 4 3 2 PAS fold GAF PF01590.26 gi|313122543|ref|YP_004038430.1| - 0.00018 22.2 0.1 0.14 12.8 0.0 3.0 3 0 0 3 3 3 1 GAF domain HTH_5 PF01022.20 gi|313122543|ref|YP_004038430.1| - 0.0013 18.6 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313122543|ref|YP_004038430.1| - 0.0022 18.0 0.0 0.01 15.9 0.0 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain GAF_3 PF13492.6 gi|313122543|ref|YP_004038430.1| - 0.014 15.8 0.0 2.8 8.3 0.0 3.1 2 0 0 2 2 2 0 GAF domain PAS_3 PF08447.12 gi|313122543|ref|YP_004038430.1| - 0.063 13.6 0.0 0.36 11.1 0.0 2.2 2 0 0 2 2 2 0 PAS fold MLTR_LBD PF17765.1 gi|313122543|ref|YP_004038430.1| - 6.7 6.8 10.4 0.7 10.0 0.2 3.5 3 1 1 4 4 3 0 MmyB-like transcription regulator ligand binding domain HalOD1 PF18545.1 gi|313122544|ref|YP_004038431.1| - 3.9e-17 62.3 0.1 4.4e-17 62.1 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 N6_Mtase PF02384.16 gi|313122545|ref|YP_004038432.1| - 1.9e-06 27.4 0.0 0.0068 15.7 0.0 2.6 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|313122545|ref|YP_004038432.1| - 8.8e-05 23.0 0.0 0.00015 22.2 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.7 gi|313122545|ref|YP_004038432.1| - 0.0023 18.0 0.0 0.0063 16.6 0.0 1.7 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Glyco_hydro_88 PF07470.13 gi|313122546|ref|YP_004038433.1| - 3.4e-07 29.7 0.7 0.054 12.6 0.0 3.3 2 1 1 3 3 3 3 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|313122546|ref|YP_004038433.1| - 0.00013 21.6 0.9 0.002 17.7 0.0 2.4 2 0 0 2 2 2 1 Glycosyl hydrolase family 76 DUF1616 PF07760.11 gi|313122548|ref|YP_004038435.1| - 7.3e-77 258.6 5.6 8.8e-77 258.4 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2976 PF11190.8 gi|313122548|ref|YP_004038435.1| - 0.02 14.7 0.3 0.02 14.7 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) Transglut_C PF00927.22 gi|313122548|ref|YP_004038435.1| - 0.048 13.8 0.0 0.087 13.0 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014732.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014732.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014732.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014732.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:33:16 2019 # [ok]