# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF1420 PF07220.6 gi|313116828|ref|YP_004037952.1| - 0.13 10.5 0.8 0.2 9.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1420) N6_N4_Mtase PF01555.13 gi|313116829|ref|YP_004037953.1| - 7.3e-38 130.3 0.1 3.4e-28 98.6 0.1 2.7 2 1 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|313116829|ref|YP_004037953.1| - 5.4e-12 45.7 0.0 1.5e-05 24.9 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|313116829|ref|YP_004037953.1| - 0.003 17.1 0.0 2.3 7.7 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 HATPase_c_3 PF13589.1 gi|313116830|ref|YP_004037954.1| - 1.6e-06 27.8 0.0 4.3e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CARDB PF07705.6 gi|313116831|ref|YP_004037955.1| - 6.7e-11 42.1 15.3 0.0064 16.5 0.1 4.6 4 0 0 4 4 4 4 CARDB DUF4352 PF11611.3 gi|313116831|ref|YP_004037955.1| - 0.002 18.2 11.0 1.2 9.2 0.3 4.4 4 2 1 6 6 6 3 Domain of unknown function (DUF4352) TraK PF06586.6 gi|313116831|ref|YP_004037955.1| - 0.027 13.6 0.1 0.44 9.6 0.0 2.5 2 0 0 2 2 2 0 TraK protein PapD_C PF02753.12 gi|313116831|ref|YP_004037955.1| - 0.033 14.0 1.0 1.1 9.1 0.1 3.4 3 1 0 3 3 3 0 Pili assembly chaperone PapD, C-terminal domain NOB1_Zn_bind PF08772.6 gi|313116831|ref|YP_004037955.1| - 0.069 12.9 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HEAT_2 PF13646.1 gi|313116834|ref|YP_004037958.1| - 7e-33 112.7 45.9 1.9e-11 44.0 2.0 7.8 2 2 5 7 7 7 7 HEAT repeats HEAT_EZ PF13513.1 gi|313116834|ref|YP_004037958.1| - 8.7e-24 83.3 45.8 1.9e-07 31.3 1.4 11.1 6 5 5 11 11 11 6 HEAT-like repeat Adaptin_N PF01602.15 gi|313116834|ref|YP_004037958.1| - 2.5e-23 82.1 0.0 1.7e-05 23.3 0.0 5.3 2 1 3 6 6 6 4 Adaptin N terminal region HEAT PF02985.17 gi|313116834|ref|YP_004037958.1| - 9.9e-21 71.9 19.8 8.7e-05 22.2 0.0 9.2 9 0 0 9 9 9 4 HEAT repeat Cnd1 PF12717.2 gi|313116834|ref|YP_004037958.1| - 8.9e-12 45.2 0.0 0.0082 16.0 0.0 5.2 4 1 1 5 5 5 3 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.11 gi|313116834|ref|YP_004037958.1| - 9.6e-09 34.9 48.8 0.01 16.2 0.5 11.0 13 0 0 13 13 10 5 PBS lyase HEAT-like repeat DNA_alkylation PF08713.6 gi|313116834|ref|YP_004037958.1| - 2.3e-07 30.5 0.6 0.2 11.1 0.0 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme Vac14_Fab1_bd PF12755.2 gi|313116834|ref|YP_004037958.1| - 4.9e-05 23.6 0.0 4.7 7.6 0.0 4.2 3 1 2 5 5 4 2 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|313116834|ref|YP_004037958.1| - 0.0068 16.2 6.9 1 9.2 0.0 6.6 8 0 0 8 8 8 1 Armadillo/beta-catenin-like repeat MMS19_N PF14500.1 gi|313116834|ref|YP_004037958.1| - 0.0079 15.4 0.6 2.4 7.3 0.0 3.9 4 1 1 5 5 5 1 Dos2-interacting transcription regulator of RNA-Pol-II DUF3385 PF11865.3 gi|313116834|ref|YP_004037958.1| - 0.024 14.5 0.1 0.82 9.5 0.0 3.5 4 1 1 5 5 5 0 Domain of unknown function (DUF3385) TIP120 PF08623.5 gi|313116834|ref|YP_004037958.1| - 0.035 13.6 0.4 11 5.5 0.0 3.3 3 0 0 3 3 3 0 TATA-binding protein interacting (TIP20) DUF4042 PF13251.1 gi|313116834|ref|YP_004037958.1| - 0.049 13.0 3.4 9.1 5.6 0.0 3.9 3 1 2 5 5 5 0 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|313116834|ref|YP_004037958.1| - 0.062 12.6 0.1 1.7 7.9 0.0 2.7 3 0 0 3 3 3 0 CLASP N terminal APP_E2 PF12925.2 gi|313116834|ref|YP_004037958.1| - 0.11 12.1 0.5 0.29 10.6 0.0 2.0 3 0 0 3 3 3 0 E2 domain of amyloid precursor protein FANCI_S2 PF14676.1 gi|313116834|ref|YP_004037958.1| - 0.11 12.4 0.0 5.6 6.8 0.0 3.4 3 2 0 3 3 3 0 FANCI solenoid 2 Cohesin_HEAT PF12765.2 gi|313116834|ref|YP_004037958.1| - 6.1 6.9 14.7 50 3.9 0.0 6.1 5 1 1 6 6 5 0 HEAT repeat associated with sister chromatid cohesion DUF2262 PF10020.4 gi|313116835|ref|YP_004037959.1| - 0.0011 19.1 0.1 0.0012 19.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2262) Phage_integrase PF00589.17 gi|313116836|ref|YP_004037960.1| - 1.8e-05 24.5 0.3 1.8e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family UvrD_C_2 PF13538.1 gi|313116837|ref|YP_004037961.1| - 2.7e-10 40.3 0.0 5.3e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.1 gi|313116837|ref|YP_004037961.1| - 4.3e-08 33.0 0.0 6.5e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313116837|ref|YP_004037961.1| - 0.00036 20.1 0.0 0.13 11.7 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|313116837|ref|YP_004037961.1| - 0.02 14.1 0.0 4.6 6.4 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|313116837|ref|YP_004037961.1| - 0.083 11.8 0.0 0.17 10.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|313116837|ref|YP_004037961.1| - 0.17 11.1 0.0 16 4.6 0.0 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF2892 PF11127.3 gi|313116838|ref|YP_004037962.1| - 0.087 12.6 1.0 0.12 12.2 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) MARVEL PF01284.18 gi|313116838|ref|YP_004037962.1| - 0.11 12.2 1.8 0.14 11.9 1.3 1.0 1 0 0 1 1 1 0 Membrane-associating domain DDE_Tnp_IS240 PF13610.1 gi|313116841|ref|YP_004037965.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116841|ref|YP_004037965.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116841|ref|YP_004037965.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116841|ref|YP_004037965.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116841|ref|YP_004037965.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116841|ref|YP_004037965.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease EthD PF07110.6 gi|313116842|ref|YP_004037966.1| - 0.042 14.7 0.0 0.07 14.0 0.0 1.3 1 0 0 1 1 1 0 EthD domain Rnk_N PF14760.1 gi|313116843|ref|YP_004037967.1| - 5.6 7.1 17.0 6.9 6.8 0.1 6.4 7 0 0 7 7 7 0 Rnk N-terminus TPR_19 PF14559.1 gi|313116844|ref|YP_004037968.1| - 8.9e-07 29.1 28.5 0.27 11.5 0.0 10.5 9 4 1 10 10 10 3 Tetratricopeptide repeat BTAD PF03704.12 gi|313116844|ref|YP_004037968.1| - 0.00038 20.7 42.7 0.26 11.5 0.3 8.5 4 3 2 8 8 8 4 Bacterial transcriptional activator domain TPR_14 PF13428.1 gi|313116844|ref|YP_004037968.1| - 0.00051 20.4 54.4 6.4 7.6 1.9 13.8 7 4 7 14 14 14 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|313116844|ref|YP_004037968.1| - 0.0041 17.4 12.9 3.8 8.1 0.2 8.5 11 0 0 11 11 11 1 Tetratricopeptide repeat TraF PF13728.1 gi|313116844|ref|YP_004037968.1| - 0.02 14.3 0.6 0.84 9.0 0.1 3.8 4 2 2 6 6 6 0 F plasmid transfer operon protein TPR_17 PF13431.1 gi|313116844|ref|YP_004037968.1| - 0.049 13.8 0.9 59 4.2 0.0 5.2 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|313116844|ref|YP_004037968.1| - 0.076 12.9 24.7 2.1 8.3 0.4 6.5 7 2 2 9 9 9 0 Tetratricopeptide repeat DUF2376 PF09550.5 gi|313116844|ref|YP_004037968.1| - 5.4 7.2 16.2 33 4.7 0.2 6.7 6 0 0 6 6 6 0 Conserved hypothetical phage protein (DUF2376) AAA_16 PF13191.1 gi|313116845|ref|YP_004037969.1| - 0.0015 18.5 3.1 2.5 8.0 0.0 4.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.1 gi|313116845|ref|YP_004037969.1| - 0.0062 16.4 2.5 0.23 11.3 0.1 3.8 4 1 0 4 4 4 1 AAA domain AAA_17 PF13207.1 gi|313116845|ref|YP_004037969.1| - 0.032 15.0 0.3 9.2 7.1 0.0 4.0 4 0 0 4 4 4 0 AAA domain RNase_H PF00075.19 gi|313116846|ref|YP_004037970.1| - 9.7e-10 38.9 0.0 3e-09 37.3 0.0 1.8 1 1 0 1 1 1 1 RNase H Peripla_BP_2 PF01497.13 gi|313116849|ref|YP_004037973.1| - 6e-12 45.1 0.0 8e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Pyr_redox_2 PF07992.9 gi|313116850|ref|YP_004037974.1| - 5.9e-08 32.8 2.0 1.2e-06 28.5 0.0 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313116850|ref|YP_004037974.1| - 8.2e-07 28.2 17.9 6.3e-05 22.0 1.0 3.7 3 1 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313116850|ref|YP_004037974.1| - 1.7e-05 24.9 0.8 0.15 12.0 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313116850|ref|YP_004037974.1| - 8.1e-05 21.2 0.1 0.00091 17.8 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|313116850|ref|YP_004037974.1| - 8.7e-05 21.5 1.5 0.0035 16.3 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|313116850|ref|YP_004037974.1| - 9.1e-05 21.6 0.2 9.1e-05 21.6 0.1 2.3 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313116850|ref|YP_004037974.1| - 0.00011 22.1 0.4 0.00011 22.1 0.3 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|313116850|ref|YP_004037974.1| - 0.00016 20.8 0.8 0.00056 19.0 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|313116850|ref|YP_004037974.1| - 0.00027 19.9 0.5 0.00027 19.9 0.4 3.4 2 1 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.22 gi|313116850|ref|YP_004037974.1| - 0.00059 20.1 2.5 0.0072 16.6 0.1 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313116850|ref|YP_004037974.1| - 0.0019 17.1 0.9 0.0019 17.1 0.6 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313116850|ref|YP_004037974.1| - 0.0029 16.7 2.1 0.0029 16.7 1.5 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|313116850|ref|YP_004037974.1| - 0.1 12.3 8.9 0.79 9.4 0.1 3.1 3 1 1 4 4 4 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|313116850|ref|YP_004037974.1| - 0.12 12.0 0.1 0.12 12.0 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_7 PF13176.1 gi|313116850|ref|YP_004037974.1| - 0.21 11.4 1.9 0.27 11.1 0.2 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat UDPG_MGDP_dh_N PF03721.9 gi|313116850|ref|YP_004037974.1| - 0.55 9.5 2.3 0.6 9.4 0.3 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NUDIX PF00293.23 gi|313116852|ref|YP_004037976.1| - 2.6e-22 78.9 0.2 5.7e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 NUDIX domain Hydrolase_6 PF13344.1 gi|313116852|ref|YP_004037976.1| - 1.4e-20 73.0 0.0 8.6e-20 70.5 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313116852|ref|YP_004037976.1| - 3.3e-14 52.3 0.1 8.2e-14 51.0 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313116852|ref|YP_004037976.1| - 6.6e-06 26.6 0.4 0.00028 21.3 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|313116852|ref|YP_004037976.1| - 1.1e-05 25.6 0.0 6e-05 23.3 0.0 2.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX_4 PF14815.1 gi|313116852|ref|YP_004037976.1| - 0.023 14.0 0.0 0.062 12.7 0.0 1.7 1 0 0 1 1 1 0 NUDIX domain PrpR_N PF06506.6 gi|313116852|ref|YP_004037976.1| - 0.027 13.8 0.2 0.26 10.6 0.0 2.3 2 0 0 2 2 2 0 Propionate catabolism activator KH_3 PF13014.1 gi|313116852|ref|YP_004037976.1| - 0.091 12.4 0.0 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 KH domain MFS_1 PF07690.11 gi|313116853|ref|YP_004037977.1| - 7.5e-16 57.7 29.9 7.5e-16 57.7 20.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|313116853|ref|YP_004037977.1| - 0.0012 18.5 0.1 0.0012 18.5 0.1 2.7 3 0 0 3 3 3 1 MFS_1 like family HAP PF03866.8 gi|313116853|ref|YP_004037977.1| - 2.1 8.1 10.0 0.078 12.7 2.0 2.2 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) PTA_PTB PF01515.14 gi|313116854|ref|YP_004037978.1| - 8.2e-93 310.9 0.0 1.1e-92 310.4 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|313116854|ref|YP_004037978.1| - 2.6e-68 230.3 0.9 3.4e-68 229.9 0.0 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|313116854|ref|YP_004037978.1| - 2.5e-28 98.8 0.3 5.6e-26 91.2 0.2 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain HTH_20 PF12840.2 gi|313116857|ref|YP_004037981.1| - 7e-12 44.9 0.0 1.2e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313116857|ref|YP_004037981.1| - 2e-05 23.8 0.0 4.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116857|ref|YP_004037981.1| - 0.00072 19.1 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313116857|ref|YP_004037981.1| - 0.023 14.3 0.0 0.063 12.9 0.0 1.7 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|313116857|ref|YP_004037981.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.4 gi|313116857|ref|YP_004037981.1| - 0.083 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|313116857|ref|YP_004037981.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC AgrD PF05931.6 gi|313116857|ref|YP_004037981.1| - 0.12 12.0 0.1 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 Staphylococcal AgrD protein Phage_rep_org_N PF09681.5 gi|313116857|ref|YP_004037981.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) CD24 PF14984.1 gi|313116860|ref|YP_004037984.1| - 0.15 11.8 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 CD24 protein TAT_signal PF10518.4 gi|313116860|ref|YP_004037984.1| - 1.2 9.3 7.2 0.67 10.1 3.0 2.1 1 1 1 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_27 PF13463.1 gi|313116861|ref|YP_004037985.1| - 0.00015 22.0 0.1 0.00036 20.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|313116861|ref|YP_004037985.1| - 0.00032 20.3 0.0 0.00098 18.7 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313116861|ref|YP_004037985.1| - 0.0019 17.8 0.1 0.0052 16.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313116861|ref|YP_004037985.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|313116861|ref|YP_004037985.1| - 0.012 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|313116861|ref|YP_004037985.1| - 0.015 15.0 0.1 0.064 12.9 0.0 2.0 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|313116861|ref|YP_004037985.1| - 0.025 14.7 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|313116861|ref|YP_004037985.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|313116861|ref|YP_004037985.1| - 0.071 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PQQ_2 PF13360.1 gi|313116864|ref|YP_004037988.1| - 2.4e-29 102.4 16.5 3.8e-14 52.7 3.0 3.5 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|313116864|ref|YP_004037988.1| - 6.1e-11 42.2 33.5 0.025 14.8 0.6 8.1 8 2 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|313116864|ref|YP_004037988.1| - 3.4e-08 32.6 3.7 1.2 8.7 0.0 7.3 7 0 0 7 7 7 2 PQQ enzyme repeat ABC_transp_aux PF09822.4 gi|313116868|ref|YP_004037992.1| - 1.5e-19 70.5 0.0 1.7e-05 24.4 0.0 3.2 3 0 0 3 3 3 3 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|313116868|ref|YP_004037992.1| - 3.6e-12 46.2 7.7 0.00038 20.6 0.1 4.8 4 0 0 4 4 4 3 Domain of unknown function (DUF4350) SNase PF00565.12 gi|313116868|ref|YP_004037992.1| - 2.6e-10 40.4 0.0 1.4e-08 34.9 0.0 2.4 2 0 0 2 2 2 1 Staphylococcal nuclease homologue ThuA PF06283.6 gi|313116868|ref|YP_004037992.1| - 8.1e-08 32.2 0.1 0.00097 18.9 0.0 3.4 3 1 0 3 3 3 2 Trehalose utilisation UDPG_MGDP_dh_C PF03720.10 gi|313116868|ref|YP_004037992.1| - 0.0014 18.7 0.0 2.1 8.5 0.0 3.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF4159 PF13709.1 gi|313116868|ref|YP_004037992.1| - 0.0015 17.6 0.1 0.6 9.1 0.0 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4159) DDOST_48kD PF03345.9 gi|313116868|ref|YP_004037992.1| - 0.0071 14.9 0.5 0.19 10.2 0.1 2.8 3 1 0 3 3 3 1 Oligosaccharyltransferase 48 kDa subunit beta NVEALA PF14055.1 gi|313116869|ref|YP_004037993.1| - 0.14 11.8 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 NVEALA protein TAT_signal PF10518.4 gi|313116869|ref|YP_004037993.1| - 0.39 10.8 3.4 0.97 9.6 2.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2370 PF10176.4 gi|313116870|ref|YP_004037994.1| - 0.047 13.0 0.6 0.079 12.2 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) Iron_permease PF04120.7 gi|313116870|ref|YP_004037994.1| - 0.84 9.2 3.2 1.3 8.5 2.3 1.3 1 0 0 1 1 1 0 Low affinity iron permease DUF4199 PF13858.1 gi|313116870|ref|YP_004037994.1| - 3.3 7.6 18.2 0.15 11.9 8.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) HTH_20 PF12840.2 gi|313116871|ref|YP_004037995.1| - 1.6e-05 24.6 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Lar_restr_allev PF14354.1 gi|313116871|ref|YP_004037995.1| - 0.0078 16.4 0.9 2.2 8.6 0.0 2.5 2 0 0 2 2 2 2 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|313116871|ref|YP_004037995.1| - 0.014 15.2 0.9 2.6 7.9 0.1 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|313116871|ref|YP_004037995.1| - 0.022 14.5 0.1 2.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_3 PF14369.1 gi|313116871|ref|YP_004037995.1| - 0.024 14.6 4.7 0.45 10.5 0.1 2.6 2 0 0 2 2 2 0 zinc-finger HTH_5 PF01022.15 gi|313116871|ref|YP_004037995.1| - 0.03 13.9 0.0 0.12 12.0 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-C4_Topoisom PF01396.14 gi|313116871|ref|YP_004037995.1| - 0.08 12.4 0.8 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Abi PF02517.11 gi|313116872|ref|YP_004037996.1| - 2.5e-18 66.0 6.0 2.5e-18 66.0 4.2 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity Colicin_V PF02674.11 gi|313116872|ref|YP_004037996.1| - 0.0072 16.1 15.6 0.017 14.9 2.3 2.5 2 1 0 2 2 2 2 Colicin V production protein DUF1129 PF06570.6 gi|313116872|ref|YP_004037996.1| - 0.039 13.2 0.6 0.039 13.2 0.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) BPD_transp_1 PF00528.17 gi|313116874|ref|YP_004037998.1| - 8.9e-22 77.4 17.6 8.9e-22 77.4 12.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313116875|ref|YP_004037999.1| - 1.2e-16 60.7 19.3 1.2e-16 60.7 13.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|313116876|ref|YP_004038000.1| - 5.3e-25 88.7 2.4 7.1e-25 88.2 1.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313116876|ref|YP_004038000.1| - 2.2e-20 73.6 3.3 3.6e-20 72.9 2.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Clr5 PF14420.1 gi|313116876|ref|YP_004038000.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Clr5 domain ABC_tran PF00005.22 gi|313116877|ref|YP_004038001.1| - 6e-33 114.0 0.0 9.2e-33 113.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313116877|ref|YP_004038001.1| - 1.8e-10 40.6 0.2 6e-10 38.9 0.1 1.9 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|313116877|ref|YP_004038001.1| - 8.3e-10 39.1 0.0 0.00022 21.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|313116877|ref|YP_004038001.1| - 7e-07 29.2 0.1 3.2e-06 27.1 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|313116877|ref|YP_004038001.1| - 0.00014 21.0 0.0 0.0097 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|313116877|ref|YP_004038001.1| - 0.00022 20.5 0.0 0.00049 19.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313116877|ref|YP_004038001.1| - 0.00035 20.9 0.1 0.00066 20.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313116877|ref|YP_004038001.1| - 0.0023 17.1 0.0 0.0041 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313116877|ref|YP_004038001.1| - 0.0044 17.0 0.0 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313116877|ref|YP_004038001.1| - 0.0057 16.7 0.0 0.025 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|313116877|ref|YP_004038001.1| - 0.012 15.0 0.3 0.1 11.9 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|313116877|ref|YP_004038001.1| - 0.013 15.6 0.1 0.064 13.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313116877|ref|YP_004038001.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Rad17 PF03215.10 gi|313116877|ref|YP_004038001.1| - 0.015 14.0 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|313116877|ref|YP_004038001.1| - 0.015 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|313116877|ref|YP_004038001.1| - 0.023 14.5 0.1 0.036 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313116877|ref|YP_004038001.1| - 0.034 13.2 0.0 0.075 12.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|313116877|ref|YP_004038001.1| - 0.11 12.2 0.1 0.9 9.2 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B GFO_IDH_MocA PF01408.17 gi|313116878|ref|YP_004038002.1| - 2.6e-21 76.3 0.1 4.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116878|ref|YP_004038002.1| - 9.9e-10 38.2 0.2 2.5e-09 36.9 0.2 1.8 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|313116878|ref|YP_004038002.1| - 3.2e-06 26.6 0.1 1.6e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 Putative oxidoreductase C terminal CN_hydrolase PF00795.17 gi|313116878|ref|YP_004038002.1| - 0.0072 15.6 0.0 0.015 14.6 0.0 1.5 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase 53-BP1_Tudor PF09038.5 gi|313116878|ref|YP_004038002.1| - 0.07 12.9 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Tumour suppressor p53-binding protein-1 Tudor CoA_binding PF02629.14 gi|313116878|ref|YP_004038002.1| - 0.14 12.6 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain AP_endonuc_2 PF01261.19 gi|313116879|ref|YP_004038003.1| - 6.6e-27 94.1 0.6 8.5e-27 93.8 0.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|313116879|ref|YP_004038003.1| - 0.042 13.3 0.5 0.36 10.4 0.0 2.7 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus MFS_1 PF07690.11 gi|313116880|ref|YP_004038004.1| - 1.9e-16 59.7 54.8 1.5e-15 56.8 28.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|313116880|ref|YP_004038004.1| - 5.5e-12 45.3 0.4 1.7e-11 43.7 0.3 1.9 1 0 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.14 gi|313116880|ref|YP_004038004.1| - 1.2e-11 43.8 5.1 1.2e-11 43.8 3.5 1.9 2 0 0 2 2 2 1 LacY proton/sugar symporter Nuc_H_symport PF03825.11 gi|313116880|ref|YP_004038004.1| - 5.8e-07 28.6 22.4 7.5e-07 28.2 15.5 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.1 gi|313116880|ref|YP_004038004.1| - 1.3e-05 23.8 28.1 2.7e-05 22.7 6.8 2.9 2 2 0 2 2 2 2 MFS/sugar transport protein Ribonuc_L-PSP PF01042.16 gi|313116881|ref|YP_004038005.1| - 1.8e-40 137.4 0.1 2e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1355 PF07090.6 gi|313116882|ref|YP_004038006.1| - 8.3e-35 119.7 0.0 1.1e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) ADH_N PF08240.7 gi|313116883|ref|YP_004038007.1| - 2.4e-31 107.7 0.3 4.3e-31 106.8 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|313116883|ref|YP_004038007.1| - 3.2e-25 88.1 0.3 4.9e-25 87.5 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ApbA PF02558.11 gi|313116883|ref|YP_004038007.1| - 0.024 14.1 0.2 0.046 13.1 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_C PF07479.9 gi|313116883|ref|YP_004038007.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NADH_4Fe-4S PF10589.4 gi|313116883|ref|YP_004038007.1| - 0.42 9.8 4.0 0.99 8.6 2.8 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PIG-L PF02585.12 gi|313116884|ref|YP_004038008.1| - 4e-32 111.4 0.8 7.1e-32 110.6 0.5 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Cas_Csx8 PF09657.5 gi|313116884|ref|YP_004038008.1| - 0.021 13.5 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein Csx8 (Cas_Csx8) Cdc6_C PF09079.6 gi|313116885|ref|YP_004038009.1| - 3.6e-17 61.8 0.1 1.1e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|313116885|ref|YP_004038009.1| - 1.7e-12 47.5 0.1 6e-12 45.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313116885|ref|YP_004038009.1| - 4e-10 39.9 3.2 3.7e-09 36.8 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain PhoH PF02562.11 gi|313116885|ref|YP_004038009.1| - 7.7e-05 22.0 0.1 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.17 gi|313116885|ref|YP_004038009.1| - 0.00084 18.2 0.0 0.0017 17.3 0.0 1.5 2 0 0 2 2 2 1 NB-ARC domain AAA_5 PF07728.9 gi|313116885|ref|YP_004038009.1| - 0.0013 18.5 0.4 0.02 14.5 0.3 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|313116885|ref|YP_004038009.1| - 0.0015 18.1 0.0 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313116885|ref|YP_004038009.1| - 0.0022 18.0 0.0 0.0043 17.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|313116885|ref|YP_004038009.1| - 0.0028 16.6 0.0 0.0066 15.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|313116885|ref|YP_004038009.1| - 0.0049 16.3 1.4 1.4 8.4 0.1 2.5 1 1 0 2 2 2 2 DEAD/DEAH box helicase AAA PF00004.24 gi|313116885|ref|YP_004038009.1| - 0.0079 16.3 1.8 0.1 12.7 1.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313116885|ref|YP_004038009.1| - 0.0089 15.5 0.1 0.024 14.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_32 PF13654.1 gi|313116885|ref|YP_004038009.1| - 0.021 13.4 0.6 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|313116885|ref|YP_004038009.1| - 0.041 13.5 0.0 0.61 9.7 0.0 2.2 1 1 1 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|313116885|ref|YP_004038009.1| - 0.11 12.1 0.0 0.35 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|313116885|ref|YP_004038009.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|313116885|ref|YP_004038009.1| - 0.12 12.8 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein GFO_IDH_MocA PF01408.17 gi|313116886|ref|YP_004038010.1| - 8.6e-25 87.5 0.2 1.3e-24 86.9 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116886|ref|YP_004038010.1| - 5.1e-13 48.8 0.1 1.1e-12 47.7 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|313116886|ref|YP_004038010.1| - 1.4e-05 25.3 0.5 2.6e-05 24.4 0.1 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|313116886|ref|YP_004038010.1| - 0.0032 17.3 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|313116886|ref|YP_004038010.1| - 0.0095 16.3 0.1 0.018 15.3 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|313116886|ref|YP_004038010.1| - 0.021 15.2 0.0 0.067 13.6 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|313116886|ref|YP_004038010.1| - 0.027 13.2 0.0 0.044 12.5 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|313116886|ref|YP_004038010.1| - 0.066 13.0 0.1 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MDMPI_C PF07398.6 gi|313116886|ref|YP_004038010.1| - 0.13 12.8 2.7 0.41 11.2 0.3 2.6 2 0 0 2 2 2 0 MDMPI C-terminal domain Saccharop_dh PF03435.13 gi|313116886|ref|YP_004038010.1| - 0.14 11.0 0.1 0.22 10.4 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|313116887|ref|YP_004038011.1| - 5.5e-18 65.6 0.3 1.2e-17 64.5 0.2 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116887|ref|YP_004038011.1| - 3.2e-11 43.0 0.1 7.1e-11 41.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|313116888|ref|YP_004038012.1| - 1.7e-13 51.1 0.0 3.4e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116888|ref|YP_004038012.1| - 6.2e-08 32.4 0.0 1.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|313116889|ref|YP_004038013.1| - 4.3e-07 30.4 0.0 6.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116889|ref|YP_004038013.1| - 0.00028 20.6 0.0 0.00062 19.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain SelA PF03841.8 gi|313116890|ref|YP_004038014.1| - 4.4e-10 38.8 0.0 1.7e-07 30.3 0.0 3.2 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|313116890|ref|YP_004038014.1| - 2.9e-09 36.1 0.0 5.1e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|313116890|ref|YP_004038014.1| - 5.3e-07 28.9 3.2 1.6e-06 27.4 1.7 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|313116890|ref|YP_004038014.1| - 3e-05 22.5 1.7 0.00035 18.9 1.2 2.0 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|313116890|ref|YP_004038014.1| - 5.4e-05 22.4 0.3 0.00016 20.8 0.1 1.9 1 1 1 2 2 2 1 Beta-eliminating lyase NAD_binding_3 PF03447.11 gi|313116890|ref|YP_004038014.1| - 0.018 15.4 0.1 0.16 12.3 0.0 2.3 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.19 gi|313116891|ref|YP_004038015.1| - 3e-25 88.7 0.5 3.3e-23 82.0 0.1 2.0 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel NYN PF01936.13 gi|313116891|ref|YP_004038015.1| - 0.083 13.1 0.0 5.3 7.3 0.0 2.6 2 1 0 2 2 2 0 NYN domain GlcNAc_2-epim PF07221.6 gi|313116892|ref|YP_004038016.1| - 1.7e-93 313.3 7.2 2.3e-93 312.9 5.0 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.9 gi|313116892|ref|YP_004038016.1| - 1.9e-06 27.5 2.2 0.00014 21.4 0.2 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.8 gi|313116892|ref|YP_004038016.1| - 0.0036 16.6 1.1 1.6 8.0 0.0 2.6 1 1 1 2 2 2 2 D-glucuronyl C5-epimerase C-terminus DUF1680 PF07944.7 gi|313116892|ref|YP_004038016.1| - 0.0042 15.4 0.5 0.37 8.9 0.0 2.2 1 1 0 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_47 PF01532.15 gi|313116892|ref|YP_004038016.1| - 0.033 12.8 0.0 4.5 5.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 47 DUF35_N PF12172.3 gi|313116893|ref|YP_004038017.1| - 2.4e-07 30.4 2.2 4.6e-07 29.5 1.5 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|313116893|ref|YP_004038017.1| - 2.8e-07 30.6 1.4 1e-06 28.8 1.0 2.1 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|313116893|ref|YP_004038017.1| - 0.00088 19.2 0.2 0.0027 17.6 0.2 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Chal_sti_synt_N PF00195.14 gi|313116893|ref|YP_004038017.1| - 0.0054 16.0 0.1 0.012 14.8 0.0 1.6 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain ACP_syn_III PF08545.5 gi|313116893|ref|YP_004038017.1| - 0.23 11.1 3.0 0.38 10.4 0.8 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|313116894|ref|YP_004038018.1| - 9.3e-14 51.0 0.5 5.4e-13 48.5 0.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|313116894|ref|YP_004038018.1| - 1.2e-09 37.6 0.2 4.4e-09 35.8 0.0 2.1 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|313116894|ref|YP_004038018.1| - 2.9e-06 26.9 2.7 3.3e-06 26.7 0.9 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|313116894|ref|YP_004038018.1| - 0.00021 20.8 0.9 0.06 13.0 0.1 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peripla_BP_2 PF01497.13 gi|313116895|ref|YP_004038019.1| - 1.3e-16 60.4 0.1 2.1e-16 59.7 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313116895|ref|YP_004038019.1| - 0.0055 16.6 4.7 0.01 15.7 3.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|313116896|ref|YP_004038020.1| - 0.44 10.6 2.6 0.83 9.8 1.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_3 PF00933.16 gi|313116897|ref|YP_004038021.1| - 1.5e-76 257.2 0.0 2e-76 256.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|313116897|ref|YP_004038021.1| - 2.3e-60 203.9 0.0 3.2e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|313116897|ref|YP_004038021.1| - 5e-11 42.3 1.3 5.5e-11 42.2 0.1 1.7 2 0 0 2 2 2 1 Fibronectin type III-like domain CARDB PF07705.6 gi|313116897|ref|YP_004038021.1| - 0.027 14.5 0.1 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 CARDB TrkA_C PF02080.16 gi|313116898|ref|YP_004038022.1| - 4e-12 45.5 0.5 7.7e-12 44.6 0.4 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|313116898|ref|YP_004038022.1| - 3.8e-10 38.9 0.0 7.5e-10 38.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313116898|ref|YP_004038022.1| - 2.1e-08 33.5 0.1 5.1e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313116898|ref|YP_004038022.1| - 5.9e-05 22.6 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313116898|ref|YP_004038022.1| - 0.003 17.1 0.1 0.009 15.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|313116898|ref|YP_004038022.1| - 0.0046 16.4 0.0 0.012 15.0 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|313116898|ref|YP_004038022.1| - 0.0068 16.1 0.0 0.018 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|313116898|ref|YP_004038022.1| - 0.026 13.9 0.0 0.071 12.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.1 gi|313116898|ref|YP_004038022.1| - 0.036 14.0 0.3 0.094 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|313116898|ref|YP_004038022.1| - 0.045 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|313116898|ref|YP_004038022.1| - 0.048 13.4 0.1 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|313116898|ref|YP_004038022.1| - 0.088 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|313116898|ref|YP_004038022.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2250 PF10007.4 gi|313116898|ref|YP_004038022.1| - 0.094 12.6 0.1 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TrkA_N PF02254.13 gi|313116899|ref|YP_004038023.1| - 2.1e-25 88.9 0.9 3.8e-25 88.1 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|313116899|ref|YP_004038023.1| - 6.2e-14 51.3 0.8 2.6e-13 49.3 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain ADH_zinc_N PF00107.21 gi|313116899|ref|YP_004038023.1| - 9.5e-05 21.9 0.1 0.0041 16.6 0.3 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|313116899|ref|YP_004038023.1| - 0.00035 20.6 1.3 0.00083 19.4 0.3 1.9 2 0 0 2 2 2 1 NADH(P)-binding XdhC_C PF13478.1 gi|313116899|ref|YP_004038023.1| - 0.00068 19.9 0.1 0.00095 19.4 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Peripla_BP_3 PF13377.1 gi|313116899|ref|YP_004038023.1| - 0.0014 18.6 1.7 0.0053 16.7 0.1 2.0 2 0 0 2 2 2 1 Periplasmic binding protein-like domain UDPG_MGDP_dh_N PF03721.9 gi|313116899|ref|YP_004038023.1| - 0.0016 17.8 0.2 0.0023 17.3 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|313116899|ref|YP_004038023.1| - 0.0022 17.6 0.4 0.0031 17.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|313116899|ref|YP_004038023.1| - 0.0023 17.0 0.4 0.0027 16.7 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|313116899|ref|YP_004038023.1| - 0.0076 16.6 0.9 0.017 15.5 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|313116899|ref|YP_004038023.1| - 0.013 15.7 0.3 0.027 14.7 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|313116899|ref|YP_004038023.1| - 0.013 15.3 0.1 0.035 13.9 0.1 1.7 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|313116899|ref|YP_004038023.1| - 0.078 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|313116899|ref|YP_004038023.1| - 0.095 11.9 0.2 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.16 gi|313116899|ref|YP_004038023.1| - 0.32 10.7 4.0 4.1 7.2 0.5 2.3 1 1 1 2 2 2 0 ThiF family CENP-Q PF13094.1 gi|313116900|ref|YP_004038024.1| - 0.0082 16.1 2.0 0.01 15.8 1.4 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit DUF2072 PF09845.4 gi|313116900|ref|YP_004038024.1| - 4 7.3 6.1 2.4 8.0 2.3 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) CitMHS PF03600.11 gi|313116901|ref|YP_004038025.1| - 2.1e-44 151.5 0.0 1.3e-38 132.4 0.0 1.7 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|313116901|ref|YP_004038025.1| - 8.3e-23 80.9 37.6 4.5e-15 55.4 13.0 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|313116901|ref|YP_004038025.1| - 7.5e-21 73.5 2.9 2.8e-13 49.2 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF883 PF05957.8 gi|313116903|ref|YP_004038027.1| - 0.055 13.8 1.7 0.34 11.3 0.0 2.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) CBS PF00571.23 gi|313116905|ref|YP_004038029.1| - 2.6e-27 94.3 0.9 1.8e-15 56.4 0.0 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|313116905|ref|YP_004038029.1| - 2.3e-19 69.1 11.1 3.3e-14 52.2 3.0 2.9 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|313116905|ref|YP_004038029.1| - 7.4e-06 25.4 3.2 7.4e-06 25.4 2.2 2.3 2 1 0 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|313116905|ref|YP_004038029.1| - 0.025 14.6 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily Peptidase_M64 PF09471.5 gi|313116905|ref|YP_004038029.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 IgA Peptidase M64 CBS PF00571.23 gi|313116908|ref|YP_004038032.1| - 3.8e-10 39.3 0.6 8.3e-10 38.3 0.4 1.6 1 0 0 1 1 1 1 CBS domain DUF1111 PF06537.6 gi|313116908|ref|YP_004038032.1| - 0.076 11.2 0.1 0.098 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1111) DUF2178 PF09946.4 gi|313116910|ref|YP_004038034.1| - 3.8e-10 39.4 0.3 5.6e-10 38.9 0.2 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) PTS_EIIC_2 PF13303.1 gi|313116910|ref|YP_004038034.1| - 0.00088 18.2 0.8 0.001 18.0 0.6 1.0 1 0 0 1 1 1 1 Phosphotransferase system, EIIC DUF4131 PF13567.1 gi|313116910|ref|YP_004038034.1| - 1.2 8.5 8.4 20 4.5 5.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HTH_3 PF01381.17 gi|313116911|ref|YP_004038035.1| - 8.5e-16 57.5 0.0 9.3e-16 57.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313116911|ref|YP_004038035.1| - 1.6e-11 44.0 0.0 1.6e-11 44.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313116911|ref|YP_004038035.1| - 7.4e-10 38.8 0.2 8e-10 38.7 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|313116911|ref|YP_004038035.1| - 7.7e-07 29.2 0.0 8.6e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|313116911|ref|YP_004038035.1| - 0.00023 20.7 0.2 0.00027 20.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|313116911|ref|YP_004038035.1| - 0.014 15.2 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|313116911|ref|YP_004038035.1| - 0.02 14.5 0.1 0.032 13.8 0.1 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|313116911|ref|YP_004038035.1| - 0.06 12.6 0.1 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|313116911|ref|YP_004038035.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.10 gi|313116911|ref|YP_004038035.1| - 0.096 12.5 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|313116911|ref|YP_004038035.1| - 0.097 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1841 PF08897.6 gi|313116911|ref|YP_004038035.1| - 0.1 12.3 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) HTH_20 PF12840.2 gi|313116912|ref|YP_004038036.1| - 7.4e-06 25.6 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain ADK_lid PF05191.9 gi|313116912|ref|YP_004038036.1| - 0.061 12.9 2.7 4.3 7.0 0.1 3.5 3 0 0 3 3 3 0 Adenylate kinase, active site lid Secretin_N_2 PF07655.8 gi|313116912|ref|YP_004038036.1| - 0.87 10.0 6.2 0.85 10.0 1.2 2.1 2 0 0 2 2 2 0 Secretin N-terminal domain MarR_2 PF12802.2 gi|313116915|ref|YP_004038039.1| - 1.1e-15 57.0 2.0 5.9e-09 35.4 0.7 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|313116915|ref|YP_004038039.1| - 2.2e-09 36.8 0.2 0.0011 18.6 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313116915|ref|YP_004038039.1| - 8.3e-09 35.0 0.0 0.00082 19.0 0.0 2.5 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.15 gi|313116915|ref|YP_004038039.1| - 1.3e-08 34.8 0.0 0.0057 16.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_24 PF13412.1 gi|313116915|ref|YP_004038039.1| - 5.3e-08 32.1 0.1 0.0059 15.9 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313116915|ref|YP_004038039.1| - 1.2e-07 31.9 0.6 2.8e-05 24.3 0.3 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313116915|ref|YP_004038039.1| - 2.6e-07 30.0 0.2 0.02 14.4 0.1 2.8 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|313116915|ref|YP_004038039.1| - 6.6e-07 29.4 0.5 0.039 14.0 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.2 gi|313116915|ref|YP_004038039.1| - 1.9e-06 27.5 0.3 0.027 14.2 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|313116915|ref|YP_004038039.1| - 3.6e-06 26.4 0.1 0.0062 16.1 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_38 PF13936.1 gi|313116915|ref|YP_004038039.1| - 4.3e-05 22.9 0.0 0.37 10.3 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.16 gi|313116915|ref|YP_004038039.1| - 0.0003 20.1 0.1 0.91 9.0 0.0 2.7 3 0 0 3 3 2 2 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|313116915|ref|YP_004038039.1| - 0.00053 19.5 0.0 0.63 9.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|313116915|ref|YP_004038039.1| - 0.00077 19.2 0.0 0.29 10.9 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|313116915|ref|YP_004038039.1| - 0.0018 18.2 0.1 0.24 11.4 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|313116915|ref|YP_004038039.1| - 0.0018 18.3 0.0 2.2 8.3 0.0 2.4 1 1 1 2 2 2 2 Penicillinase repressor Crp PF00325.15 gi|313116915|ref|YP_004038039.1| - 0.0025 17.2 0.7 0.0092 15.4 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_41 PF14502.1 gi|313116915|ref|YP_004038039.1| - 0.0026 17.3 0.0 0.019 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DUF746 PF05344.6 gi|313116915|ref|YP_004038039.1| - 0.0043 16.5 0.0 0.012 15.1 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|313116915|ref|YP_004038039.1| - 0.015 15.5 0.1 0.04 14.2 0.0 1.7 1 1 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_36 PF13730.1 gi|313116915|ref|YP_004038039.1| - 0.016 15.3 0.0 0.85 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|313116915|ref|YP_004038039.1| - 0.02 15.2 0.0 0.051 13.9 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal Phage_rep_org_N PF09681.5 gi|313116915|ref|YP_004038039.1| - 0.037 13.5 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|313116915|ref|YP_004038039.1| - 0.092 12.4 0.1 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|313116915|ref|YP_004038039.1| - 0.11 11.8 0.1 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2204 PF09970.4 gi|313116916|ref|YP_004038040.1| - 0.0034 16.8 0.4 0.32 10.4 0.0 2.3 2 0 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) HTH_20 PF12840.2 gi|313116916|ref|YP_004038040.1| - 0.024 14.4 0.2 0.068 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|313116916|ref|YP_004038040.1| - 0.033 14.0 0.1 0.068 13.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 IF2_N PF04760.10 gi|313116916|ref|YP_004038040.1| - 0.09 12.4 0.0 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DUF4423 PF14394.1 gi|313116916|ref|YP_004038040.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PqqD PF05402.7 gi|313116916|ref|YP_004038040.1| - 0.13 12.3 1.1 2.9 7.9 0.1 2.7 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) SWIM PF04434.12 gi|313116917|ref|YP_004038041.1| - 0.0069 15.8 0.6 0.02 14.3 0.4 1.8 1 1 0 1 1 1 1 SWIM zinc finger ABC2_membrane_2 PF12679.2 gi|313116919|ref|YP_004038043.1| - 8.8e-13 47.7 10.1 1.1e-12 47.3 7.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313116919|ref|YP_004038043.1| - 7e-10 38.4 8.7 1.2e-09 37.7 5.5 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313116919|ref|YP_004038043.1| - 1.2 8.0 11.8 1.5 7.7 8.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313116920|ref|YP_004038044.1| - 4e-26 91.9 0.0 1.1e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313116920|ref|YP_004038044.1| - 1e-15 58.4 0.0 2e-09 37.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313116920|ref|YP_004038044.1| - 3.5e-06 26.4 0.0 0.07 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313116920|ref|YP_004038044.1| - 8.3e-06 25.2 0.1 1.6e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|313116920|ref|YP_004038044.1| - 0.00021 20.8 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_30 PF13604.1 gi|313116920|ref|YP_004038044.1| - 0.0014 18.2 2.1 0.015 14.8 0.2 2.6 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|313116920|ref|YP_004038044.1| - 0.0044 17.3 0.1 0.0069 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|313116920|ref|YP_004038044.1| - 0.0063 16.4 0.1 0.83 9.6 0.0 2.8 2 1 0 3 3 3 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|313116920|ref|YP_004038044.1| - 0.0084 14.9 0.3 0.014 14.1 0.2 1.3 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|313116920|ref|YP_004038044.1| - 0.056 12.6 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313116920|ref|YP_004038044.1| - 0.057 12.8 1.0 0.23 10.8 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|313116920|ref|YP_004038044.1| - 0.085 11.8 0.0 4.4 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|313116920|ref|YP_004038044.1| - 0.11 12.3 0.2 0.34 10.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313116920|ref|YP_004038044.1| - 0.15 12.2 0.4 2.8 8.0 0.3 2.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|313116920|ref|YP_004038044.1| - 0.17 11.3 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|313116920|ref|YP_004038044.1| - 0.19 11.6 2.5 0.91 9.4 1.1 2.3 1 1 1 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313116921|ref|YP_004038045.1| - 1e-17 63.9 6.9 1.6e-17 63.2 4.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313116921|ref|YP_004038045.1| - 3.8e-11 42.5 3.0 4.7e-11 42.2 2.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313116921|ref|YP_004038045.1| - 1e-06 28.0 1.9 1.2e-06 27.8 1.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313116921|ref|YP_004038045.1| - 0.014 14.6 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|313116921|ref|YP_004038045.1| - 0.8 8.8 7.9 1.3 8.1 5.5 1.4 1 1 0 1 1 1 0 ABC-2 type transporter TrmB PF01978.14 gi|313116923|ref|YP_004038047.1| - 1.9e-09 37.1 0.2 5e-09 35.7 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313116923|ref|YP_004038047.1| - 1.8e-06 27.6 0.1 5.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313116923|ref|YP_004038047.1| - 6.4e-05 22.2 0.0 0.00068 18.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116923|ref|YP_004038047.1| - 0.00046 19.7 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RP-C PF03428.8 gi|313116923|ref|YP_004038047.1| - 0.0072 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_IclR PF09339.5 gi|313116923|ref|YP_004038047.1| - 0.011 15.2 0.1 0.11 12.1 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313116923|ref|YP_004038047.1| - 0.017 14.7 0.4 0.085 12.5 0.0 2.2 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.11 gi|313116923|ref|YP_004038047.1| - 0.031 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor F-112 PF09645.5 gi|313116923|ref|YP_004038047.1| - 0.043 13.7 0.0 9.3 6.1 0.0 2.2 2 0 0 2 2 2 0 F-112 protein HTH_29 PF13551.1 gi|313116923|ref|YP_004038047.1| - 0.079 13.1 0.1 0.2 11.8 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn helix ADH_zinc_N_2 PF13602.1 gi|313116923|ref|YP_004038047.1| - 0.16 12.9 1.7 0.54 11.1 1.1 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase FUR PF01475.14 gi|313116925|ref|YP_004038049.1| - 0.0031 17.4 0.1 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Tnp_Tc3_2 PF01498.13 gi|313116925|ref|YP_004038049.1| - 0.012 15.6 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.7 gi|313116925|ref|YP_004038049.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain Tic20 PF09685.5 gi|313116926|ref|YP_004038050.1| - 3.2e-16 59.2 4.4 3.2e-16 59.2 3.1 2.8 2 1 0 2 2 2 1 Tic20-like protein Hydrolase PF00702.21 gi|313116928|ref|YP_004038052.1| - 6.7e-55 186.8 6.0 6.7e-55 186.8 4.2 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|313116928|ref|YP_004038052.1| - 9.5e-51 172.0 0.2 1.6e-50 171.2 0.1 1.4 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.21 gi|313116928|ref|YP_004038052.1| - 7.5e-27 93.2 0.4 4e-12 46.1 0.0 3.2 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|313116928|ref|YP_004038052.1| - 2.7e-18 66.8 0.0 1.6e-17 64.2 0.0 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313116928|ref|YP_004038052.1| - 1.5e-06 27.9 3.3 0.0023 17.5 0.5 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|313116928|ref|YP_004038052.1| - 0.00096 19.0 1.6 0.0078 16.0 0.0 3.2 5 0 0 5 5 5 1 Haloacid dehalogenase-like hydrolase Plug_translocon PF10559.4 gi|313116928|ref|YP_004038052.1| - 0.088 12.3 0.6 0.2 11.2 0.4 1.6 1 0 0 1 1 1 0 Plug domain of Sec61p Thioredoxin_3 PF13192.1 gi|313116928|ref|YP_004038052.1| - 0.12 12.2 1.0 21 4.9 0.1 3.0 3 0 0 3 3 3 0 Thioredoxin domain MFP2b PF12150.3 gi|313116928|ref|YP_004038052.1| - 0.12 11.0 0.0 0.22 10.2 0.0 1.3 1 0 0 1 1 1 0 Cytosolic motility protein Amidohydro_4 PF13147.1 gi|313116929|ref|YP_004038053.1| - 8.6e-21 75.1 13.5 2e-20 73.9 9.4 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|313116929|ref|YP_004038053.1| - 6.3e-15 55.6 0.3 5.1e-11 42.8 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313116929|ref|YP_004038053.1| - 2.9e-12 46.1 0.5 6.9e-12 45.0 0.4 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313116929|ref|YP_004038053.1| - 1.7e-09 37.4 5.6 1.5e-06 27.7 1.2 3.4 2 1 0 2 2 2 2 Amidohydrolase family DUF3188 PF11384.3 gi|313116930|ref|YP_004038054.1| - 0.063 12.8 0.1 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) Peptidase_S49 PF01343.13 gi|313116931|ref|YP_004038055.1| - 2.6e-22 79.2 1.3 7.5e-13 48.5 0.8 2.5 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|313116931|ref|YP_004038055.1| - 4.4e-09 36.2 0.2 2.3e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|313116931|ref|YP_004038055.1| - 2.1e-05 23.4 0.1 3e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|313116931|ref|YP_004038055.1| - 0.00053 19.1 1.5 0.067 12.3 0.1 2.9 3 1 1 4 4 4 2 Enoyl-CoA hydratase/isomerase family Ligase_CoA PF00549.14 gi|313116931|ref|YP_004038055.1| - 0.0034 16.9 0.1 0.012 15.2 0.1 1.9 2 0 0 2 2 2 1 CoA-ligase Metal_resist PF13801.1 gi|313116931|ref|YP_004038055.1| - 0.007 16.3 0.1 0.33 10.9 0.0 2.4 2 0 0 2 2 2 1 Heavy-metal resistance OKR_DC_1_N PF03709.10 gi|313116931|ref|YP_004038055.1| - 0.037 14.0 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Abhydrolase_5 PF12695.2 gi|313116932|ref|YP_004038056.1| - 0.00012 21.8 0.2 0.0002 21.1 0.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF4350 PF14258.1 gi|313116932|ref|YP_004038056.1| - 0.00019 21.5 0.1 0.001 19.2 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|313116932|ref|YP_004038056.1| - 0.00057 19.4 0.0 0.00076 19.0 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system HATPase_c PF02518.21 gi|313116933|ref|YP_004038057.1| - 2.9e-16 59.1 0.1 5.6e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313116933|ref|YP_004038057.1| - 5.5e-09 36.0 0.6 4.3e-08 33.1 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|313116933|ref|YP_004038057.1| - 3e-08 33.9 0.7 6e-07 29.7 0.1 3.0 2 2 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|313116933|ref|YP_004038057.1| - 1.3e-06 28.2 0.0 2.7e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313116933|ref|YP_004038057.1| - 8.1e-06 25.5 0.2 4.6e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|313116933|ref|YP_004038057.1| - 0.00015 21.5 0.1 0.00099 18.8 0.1 2.4 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|313116933|ref|YP_004038057.1| - 0.0033 17.1 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|313116933|ref|YP_004038057.1| - 0.0081 16.1 0.5 0.87 9.6 0.0 2.9 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|313116933|ref|YP_004038057.1| - 0.019 15.2 0.1 0.4 10.9 0.1 2.5 1 1 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|313116933|ref|YP_004038057.1| - 0.025 14.2 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UbiA PF01040.13 gi|313116934|ref|YP_004038058.1| - 2.4e-19 69.6 23.7 3.1e-19 69.2 16.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3353 PF11833.3 gi|313116934|ref|YP_004038058.1| - 7.3 6.0 7.0 2.5 7.4 2.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) HTH_10 PF04967.7 gi|313116935|ref|YP_004038059.1| - 6.5e-19 67.2 0.0 1e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.7 gi|313116935|ref|YP_004038059.1| - 0.00021 20.8 0.1 0.0039 16.8 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|313116935|ref|YP_004038059.1| - 0.0015 17.9 0.0 0.0032 16.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116935|ref|YP_004038059.1| - 0.0067 16.0 0.1 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|313116935|ref|YP_004038059.1| - 0.008 15.4 0.1 0.016 14.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|313116935|ref|YP_004038059.1| - 0.012 14.8 0.2 0.049 12.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|313116935|ref|YP_004038059.1| - 0.05 13.0 0.3 0.14 11.5 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.17 gi|313116935|ref|YP_004038059.1| - 0.058 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|313116935|ref|YP_004038059.1| - 0.058 13.3 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|313116935|ref|YP_004038059.1| - 0.087 12.4 0.1 0.39 10.2 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|313116935|ref|YP_004038059.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|313116935|ref|YP_004038059.1| - 0.12 12.0 0.0 1.6 8.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|313116935|ref|YP_004038059.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain p450 PF00067.17 gi|313116936|ref|YP_004038060.1| - 4.3e-96 322.2 0.0 4.8e-96 322.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Peptidase_S8 PF00082.17 gi|313116938|ref|YP_004038062.1| - 1.8e-59 201.2 8.4 2.5e-59 200.7 5.8 1.2 1 0 0 1 1 1 1 Subtilase family PadR PF03551.9 gi|313116939|ref|YP_004038063.1| - 1.3e-14 53.7 0.9 1.5e-14 53.5 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313116939|ref|YP_004038063.1| - 2.5e-06 27.7 0.0 2.9e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313116939|ref|YP_004038063.1| - 0.00032 20.6 0.0 0.00043 20.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|313116939|ref|YP_004038063.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) USP7_ICP0_bdg PF12436.3 gi|313116940|ref|YP_004038064.1| - 0.093 11.9 0.0 0.093 11.9 0.0 1.0 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 DUF2850 PF11012.3 gi|313116941|ref|YP_004038065.1| - 0.16 12.2 0.7 6.8 6.9 0.0 3.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2850) HxlR PF01638.12 gi|313116942|ref|YP_004038066.1| - 1.2e-27 95.3 0.0 1.5e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116942|ref|YP_004038066.1| - 0.0029 17.3 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PAS_9 PF13426.1 gi|313116944|ref|YP_004038068.1| - 3.5e-42 142.9 0.1 1e-16 61.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313116944|ref|YP_004038068.1| - 2.5e-33 114.2 0.0 9e-10 38.3 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|313116944|ref|YP_004038068.1| - 8.3e-24 82.5 0.0 7.3e-08 31.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain HTH_10 PF04967.7 gi|313116944|ref|YP_004038068.1| - 5e-22 77.2 0.0 1.6e-21 75.6 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313116944|ref|YP_004038068.1| - 8.3e-21 74.0 1.1 2.2e-06 27.6 0.0 4.3 3 1 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|313116944|ref|YP_004038068.1| - 5.9e-20 72.2 1.1 1.4e-10 41.8 0.2 2.8 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|313116944|ref|YP_004038068.1| - 7.2e-19 68.1 0.4 4.5e-09 36.4 0.1 2.7 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|313116944|ref|YP_004038068.1| - 5e-16 58.5 0.0 3.2e-05 23.9 0.0 4.6 3 1 1 4 4 4 3 PAS fold GAF PF01590.21 gi|313116944|ref|YP_004038068.1| - 1.1e-06 28.8 0.3 0.0021 18.1 0.1 2.7 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.2 gi|313116944|ref|YP_004038068.1| - 0.00042 20.3 0.0 2.2 8.3 0.0 4.0 4 0 0 4 4 4 1 PAS fold PAS_11 PF14598.1 gi|313116944|ref|YP_004038068.1| - 0.00091 19.1 0.0 0.78 9.7 0.0 3.4 3 0 0 3 3 3 1 PAS domain Sigma70_r4_2 PF08281.7 gi|313116944|ref|YP_004038068.1| - 0.0027 17.1 0.0 0.0081 15.5 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 ATP-cone PF03477.11 gi|313116944|ref|YP_004038068.1| - 0.011 16.1 0.5 4.4 7.7 0.0 3.2 2 0 0 2 2 2 0 ATP cone domain DUF134 PF02001.11 gi|313116944|ref|YP_004038068.1| - 0.027 14.3 0.0 0.11 12.4 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.14 gi|313116944|ref|YP_004038068.1| - 0.048 12.9 0.0 0.13 11.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family CBS PF00571.23 gi|313116945|ref|YP_004038069.1| - 7.4e-23 80.0 0.4 5.3e-11 42.1 0.0 2.5 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.14 gi|313116945|ref|YP_004038069.1| - 2.6e-21 75.2 0.0 5.2e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313116945|ref|YP_004038069.1| - 1.3e-07 31.4 0.0 4e-07 29.8 0.0 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|313116945|ref|YP_004038069.1| - 0.017 15.6 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 Thioesterase-like superfamily 4HBT PF03061.17 gi|313116945|ref|YP_004038069.1| - 0.098 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Thioesterase superfamily Ribosomal_L18_c PF14204.1 gi|313116945|ref|YP_004038069.1| - 0.13 12.8 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region Copper-bind PF00127.15 gi|313116947|ref|YP_004038071.1| - 1.6e-08 34.6 0.1 2.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313116947|ref|YP_004038071.1| - 2.4e-07 30.5 0.0 1e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.10 gi|313116947|ref|YP_004038071.1| - 3.8e-05 23.3 0.3 6.7e-05 22.6 0.2 1.5 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|313116947|ref|YP_004038071.1| - 0.0013 18.2 0.1 0.0031 17.0 0.1 1.8 1 1 0 1 1 1 1 Multicopper oxidase SoxE PF06525.6 gi|313116947|ref|YP_004038071.1| - 0.0096 15.2 0.7 0.033 13.4 0.5 2.1 1 1 0 1 1 1 1 Sulfocyanin (SoxE) COX2 PF00116.15 gi|313116947|ref|YP_004038071.1| - 0.064 13.0 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain TALPID3 PF15324.1 gi|313116947|ref|YP_004038071.1| - 4.6 4.4 7.0 5.6 4.1 4.9 1.1 1 0 0 1 1 1 0 Hedgehog signalling target FecR PF04773.8 gi|313116948|ref|YP_004038072.1| - 0.18 12.0 7.4 0.29 11.3 0.2 4.2 3 3 2 5 5 5 0 FecR protein HtaA PF04213.8 gi|313116948|ref|YP_004038072.1| - 7.3 6.7 24.5 0.43 10.7 1.7 4.2 1 1 3 4 4 4 0 Htaa DUF2218 PF09981.4 gi|313116949|ref|YP_004038073.1| - 0.069 13.3 2.9 4.5 7.5 0.1 3.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2218) zf-Di19 PF05605.7 gi|313116950|ref|YP_004038074.1| - 0.045 13.8 0.9 0.1 12.7 0.5 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TrmB PF01978.14 gi|313116951|ref|YP_004038075.1| - 2.3e-05 24.0 0.0 4.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313116951|ref|YP_004038075.1| - 0.00011 21.8 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|313116951|ref|YP_004038075.1| - 0.00023 20.8 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|313116951|ref|YP_004038075.1| - 0.00035 20.1 0.1 0.00074 19.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|313116951|ref|YP_004038075.1| - 0.00051 19.8 0.0 0.0014 18.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313116951|ref|YP_004038075.1| - 0.00058 19.3 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313116951|ref|YP_004038075.1| - 0.0018 17.8 0.1 0.0043 16.6 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|313116951|ref|YP_004038075.1| - 0.0037 16.6 0.1 0.008 15.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|313116951|ref|YP_004038075.1| - 0.0042 16.4 0.0 0.0099 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|313116951|ref|YP_004038075.1| - 0.0073 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313116951|ref|YP_004038075.1| - 0.019 15.3 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313116951|ref|YP_004038075.1| - 0.031 13.9 0.1 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|313116951|ref|YP_004038075.1| - 0.052 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|313116951|ref|YP_004038075.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_29 PF13551.1 gi|313116951|ref|YP_004038075.1| - 0.07 13.2 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|313116951|ref|YP_004038075.1| - 0.077 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|313116951|ref|YP_004038075.1| - 0.093 12.7 0.9 0.49 10.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain GM_CSF PF01109.12 gi|313116952|ref|YP_004038076.1| - 0.061 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor UbiA PF01040.13 gi|313116952|ref|YP_004038076.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF2345 PF10106.4 gi|313116953|ref|YP_004038077.1| - 0.043 13.4 0.0 6.7 6.2 0.0 3.0 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2345) HxlR PF01638.12 gi|313116957|ref|YP_004038081.1| - 3.7e-21 74.5 0.0 5.7e-21 73.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116957|ref|YP_004038081.1| - 0.056 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313116959|ref|YP_004038083.1| - 9.9e-27 92.4 0.0 1.2e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116959|ref|YP_004038083.1| - 0.056 13.2 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|313116959|ref|YP_004038083.1| - 0.072 12.8 0.0 0.094 12.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_IS240 PF13610.1 gi|313116960|ref|YP_004038084.1| - 7e-28 97.3 0.0 1.3e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116960|ref|YP_004038084.1| - 6.9e-08 31.9 0.6 6.9e-08 31.9 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116960|ref|YP_004038084.1| - 0.004 16.4 0.1 0.008 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116960|ref|YP_004038084.1| - 0.0062 16.6 0.1 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116960|ref|YP_004038084.1| - 0.031 14.2 0.0 0.073 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116960|ref|YP_004038084.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease Citrate_synt PF00285.16 gi|313116961|ref|YP_004038085.1| - 1.3e-111 372.7 0.0 1.5e-111 372.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Cu-oxidase_3 PF07732.10 gi|313116962|ref|YP_004038086.1| - 1.8e-09 37.3 0.1 3.9e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Multicopper oxidase Copper-bind PF00127.15 gi|313116962|ref|YP_004038086.1| - 2e-06 27.9 0.4 1.8e-05 24.9 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|313116962|ref|YP_004038086.1| - 3.3e-05 23.4 0.3 0.00048 19.6 0.2 2.6 2 1 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|313116962|ref|YP_004038086.1| - 0.005 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.15 gi|313116963|ref|YP_004038087.1| - 2.1e-47 161.7 47.5 4.3e-47 160.7 32.9 1.5 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF3353 PF11833.3 gi|313116964|ref|YP_004038088.1| - 0.00043 19.8 1.8 0.00052 19.5 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) DUF981 PF06168.6 gi|313116964|ref|YP_004038088.1| - 0.015 15.0 3.8 0.018 14.8 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) COX15-CtaA PF02628.10 gi|313116964|ref|YP_004038088.1| - 0.052 12.4 1.3 0.054 12.3 0.9 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein 7TMR-DISM_7TM PF07695.6 gi|313116964|ref|YP_004038088.1| - 0.097 12.3 2.6 0.14 11.8 1.8 1.3 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF4199 PF13858.1 gi|313116964|ref|YP_004038088.1| - 0.18 11.7 1.9 0.15 11.9 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF202 PF02656.10 gi|313116964|ref|YP_004038088.1| - 4 7.7 5.0 23 5.3 3.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) HTH_20 PF12840.2 gi|313116965|ref|YP_004038089.1| - 1.3e-11 44.1 0.1 1.9e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313116965|ref|YP_004038089.1| - 4.3e-05 23.1 0.0 6.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313116965|ref|YP_004038089.1| - 7.7e-05 22.2 0.0 0.00016 21.1 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313116965|ref|YP_004038089.1| - 0.016 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|313116965|ref|YP_004038089.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF4423 PF14394.1 gi|313116965|ref|YP_004038089.1| - 0.093 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|313116965|ref|YP_004038089.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.14 gi|313116965|ref|YP_004038089.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.1 gi|313116965|ref|YP_004038089.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|313116966|ref|YP_004038090.1| - 3.3e-19 68.2 0.0 5.6e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|313116966|ref|YP_004038090.1| - 0.0013 18.2 2.4 0.059 12.9 0.0 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain PuR_N PF09182.5 gi|313116966|ref|YP_004038090.1| - 0.0075 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal HTH_24 PF13412.1 gi|313116966|ref|YP_004038090.1| - 0.0086 15.4 0.0 0.03 13.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313116966|ref|YP_004038090.1| - 0.0086 15.7 0.1 0.036 13.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313116966|ref|YP_004038090.1| - 0.029 14.1 0.3 0.27 11.0 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313116966|ref|YP_004038090.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain UPF0122 PF04297.9 gi|313116966|ref|YP_004038090.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2249 PF10006.4 gi|313116967|ref|YP_004038091.1| - 2.9e-22 78.0 0.1 3.2e-22 77.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|313116968|ref|YP_004038092.1| - 1.6e-15 56.4 1.0 1.9e-15 56.1 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|313116968|ref|YP_004038092.1| - 0.00017 21.1 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Y2_Tnp PF04986.8 gi|313116968|ref|YP_004038092.1| - 0.062 13.0 0.0 0.077 12.7 0.0 1.1 1 0 0 1 1 1 0 Putative transposase Radical_SAM PF04055.16 gi|313116969|ref|YP_004038093.1| - 9.6e-19 68.1 0.0 1.3e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|313116969|ref|YP_004038093.1| - 3.8e-06 26.9 0.0 7.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|313116969|ref|YP_004038093.1| - 4.2e-05 23.6 0.0 6.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.19 gi|313116969|ref|YP_004038093.1| - 0.032 13.6 0.0 0.082 12.3 0.0 1.7 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain TP_methylase PF00590.15 gi|313116969|ref|YP_004038093.1| - 0.035 13.8 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.6 gi|313116969|ref|YP_004038093.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) GlutR_dimer PF00745.15 gi|313116970|ref|YP_004038094.1| - 2.5e-08 33.7 1.3 3.1e-08 33.4 0.9 1.1 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain DUF2564 PF10819.3 gi|313116970|ref|YP_004038094.1| - 0.057 13.5 0.4 0.081 13.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) GPP34 PF05719.6 gi|313116970|ref|YP_004038094.1| - 0.062 13.3 0.4 0.073 13.1 0.3 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) EcoEI_R_C PF08463.5 gi|313116970|ref|YP_004038094.1| - 0.076 12.8 0.0 0.083 12.7 0.0 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal Copper-bind PF00127.15 gi|313116971|ref|YP_004038095.1| - 4.6e-15 55.6 1.2 2.2e-14 53.4 0.8 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313116971|ref|YP_004038095.1| - 5.4e-05 23.0 0.1 7.6e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|313116971|ref|YP_004038095.1| - 0.00061 19.5 2.7 0.0012 18.6 1.9 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence F5_F8_type_C PF00754.20 gi|313116972|ref|YP_004038096.1| - 0.019 14.7 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 F5/8 type C domain DUF4064 PF13273.1 gi|313116973|ref|YP_004038097.1| - 0.5 10.4 5.2 0.85 9.7 0.0 3.6 4 1 0 4 4 4 0 Protein of unknown function (DUF4064) Ectatomin PF06457.6 gi|313116974|ref|YP_004038098.1| - 0.14 11.8 0.0 0.23 11.2 0.0 1.4 1 1 0 1 1 1 0 Ectatomin Cu-oxidase_2 PF07731.9 gi|313116975|ref|YP_004038099.1| - 4.7e-30 103.8 14.6 2.4e-18 65.9 3.1 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|313116975|ref|YP_004038099.1| - 3.3e-22 78.4 7.1 6.6e-19 67.7 0.5 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|313116975|ref|YP_004038099.1| - 4.4e-12 46.1 0.2 1.9e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|313116975|ref|YP_004038099.1| - 2.8e-06 27.1 0.0 0.022 14.6 0.0 2.6 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|313116975|ref|YP_004038099.1| - 0.018 14.9 1.8 0.035 14.1 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|313116976|ref|YP_004038100.1| - 1.7e-29 101.9 8.5 3.1e-14 52.9 0.6 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family DUF272 PF03312.10 gi|313116976|ref|YP_004038100.1| - 0.0024 18.0 0.2 2.4 8.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF272) DUF2924 PF11149.3 gi|313116976|ref|YP_004038100.1| - 0.094 12.7 0.4 8.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) Dsh_C PF12316.3 gi|313116976|ref|YP_004038100.1| - 0.26 11.3 5.0 0.061 13.4 1.0 1.8 2 0 0 2 2 2 0 Segment polarity protein dishevelled (Dsh) C terminal Peripla_BP_2 PF01497.13 gi|313116977|ref|YP_004038101.1| - 1.2e-16 60.5 0.0 1.6e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PDGLE PF13190.1 gi|313116977|ref|YP_004038101.1| - 0.16 11.6 0.6 0.72 9.5 0.0 2.1 2 0 0 2 2 2 0 PDGLE domain UCR_Fe-S_N PF10399.4 gi|313116977|ref|YP_004038101.1| - 0.94 8.7 3.9 27 4.0 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aminotran_5 PF00266.14 gi|313116978|ref|YP_004038102.1| - 3.9e-149 496.4 0.0 4.7e-149 496.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.11 gi|313116978|ref|YP_004038102.1| - 5.9e-15 55.3 0.0 1.1e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DegT_DnrJ_EryC1 PF01041.12 gi|313116978|ref|YP_004038102.1| - 7.1e-12 45.0 0.4 1.1e-11 44.3 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|313116978|ref|YP_004038102.1| - 1.7e-07 30.7 0.0 2.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313116978|ref|YP_004038102.1| - 4.3e-05 21.9 0.1 9.3e-05 20.8 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|313116978|ref|YP_004038102.1| - 0.00081 17.9 0.0 0.0017 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Glyoxalase_2 PF12681.2 gi|313116979|ref|YP_004038103.1| - 3.9e-18 66.0 0.0 4.6e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313116979|ref|YP_004038103.1| - 1.1e-16 60.9 0.0 1.3e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313116979|ref|YP_004038103.1| - 9.3e-13 48.1 0.0 1.1e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313116979|ref|YP_004038103.1| - 2.5e-05 24.2 0.0 4.1e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain AAA_16 PF13191.1 gi|313116980|ref|YP_004038104.1| - 3.1e-16 59.8 0.3 3.3e-15 56.5 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|313116980|ref|YP_004038104.1| - 5.3e-15 54.9 0.0 2.1e-14 52.9 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|313116980|ref|YP_004038104.1| - 2.6e-13 50.2 0.1 7.8e-13 48.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|313116980|ref|YP_004038104.1| - 3.3e-06 26.1 0.0 8.1e-06 24.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|313116980|ref|YP_004038104.1| - 2.1e-05 24.2 0.0 5e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313116980|ref|YP_004038104.1| - 3.8e-05 23.8 0.3 0.00013 22.2 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313116980|ref|YP_004038104.1| - 4.5e-05 22.9 0.0 8.5e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|313116980|ref|YP_004038104.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|313116980|ref|YP_004038104.1| - 0.00016 21.3 0.6 0.00041 20.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313116980|ref|YP_004038104.1| - 0.00025 21.1 0.0 0.00075 19.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|313116980|ref|YP_004038104.1| - 0.00038 20.1 0.0 0.00071 19.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|313116980|ref|YP_004038104.1| - 0.00062 20.0 0.0 0.0018 18.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter IstB_IS21 PF01695.12 gi|313116980|ref|YP_004038104.1| - 0.00076 18.9 0.1 0.022 14.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.17 gi|313116980|ref|YP_004038104.1| - 0.00087 18.2 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DUF2791 PF10923.3 gi|313116980|ref|YP_004038104.1| - 0.00089 17.9 0.0 0.0021 16.7 0.0 1.6 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) AAA_32 PF13654.1 gi|313116980|ref|YP_004038104.1| - 0.0011 17.7 0.1 0.32 9.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|313116980|ref|YP_004038104.1| - 0.0013 18.8 0.1 0.0046 17.1 0.1 2.1 1 1 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|313116980|ref|YP_004038104.1| - 0.0016 17.8 0.6 0.018 14.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|313116980|ref|YP_004038104.1| - 0.0036 18.1 0.9 0.012 16.4 0.6 2.2 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|313116980|ref|YP_004038104.1| - 0.0049 16.1 0.1 0.73 9.0 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein DAP3 PF10236.4 gi|313116980|ref|YP_004038104.1| - 0.022 13.7 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|313116980|ref|YP_004038104.1| - 0.04 13.4 0.9 2.7 7.4 0.1 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|313116980|ref|YP_004038104.1| - 0.052 13.4 0.1 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.9 gi|313116980|ref|YP_004038104.1| - 0.055 12.4 0.1 0.28 10.0 0.0 2.1 2 1 0 2 2 2 0 PIF1-like helicase DUF2075 PF09848.4 gi|313116980|ref|YP_004038104.1| - 0.081 11.8 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|313116980|ref|YP_004038104.1| - 0.083 12.7 0.1 0.45 10.3 0.0 2.2 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|313116980|ref|YP_004038104.1| - 0.09 12.2 0.2 10 5.5 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family PCP_red PF08369.5 gi|313116980|ref|YP_004038104.1| - 0.1 12.4 0.0 0.36 10.7 0.0 1.9 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit AAA PF00004.24 gi|313116981|ref|YP_004038105.1| - 5.9e-39 133.2 0.0 1.6e-38 131.8 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313116981|ref|YP_004038105.1| - 1.1e-06 28.4 0.5 7.7e-06 25.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|313116981|ref|YP_004038105.1| - 1.1e-05 26.1 0.0 5.8e-05 23.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313116981|ref|YP_004038105.1| - 3.5e-05 23.8 0.6 3.5e-05 23.8 0.4 2.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|313116981|ref|YP_004038105.1| - 4.5e-05 23.3 0.0 0.00018 21.4 0.0 2.1 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|313116981|ref|YP_004038105.1| - 5e-05 22.4 0.0 0.00012 21.2 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|313116981|ref|YP_004038105.1| - 7.2e-05 22.9 1.3 0.0023 18.0 0.3 2.7 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|313116981|ref|YP_004038105.1| - 0.00017 21.8 0.0 0.00034 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|313116981|ref|YP_004038105.1| - 0.00077 19.1 0.1 0.0035 17.0 0.1 2.2 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|313116981|ref|YP_004038105.1| - 0.0014 18.5 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313116981|ref|YP_004038105.1| - 0.0028 16.7 0.0 0.011 14.7 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|313116981|ref|YP_004038105.1| - 0.004 17.1 4.8 0.061 13.2 0.1 3.6 3 1 0 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|313116981|ref|YP_004038105.1| - 0.0054 16.1 0.1 0.013 14.9 0.1 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|313116981|ref|YP_004038105.1| - 0.0062 15.2 0.0 0.014 14.1 0.0 1.4 1 1 0 1 1 1 1 TIP49 C-terminus AAA_2 PF07724.9 gi|313116981|ref|YP_004038105.1| - 0.0078 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|313116981|ref|YP_004038105.1| - 0.0086 15.0 0.0 0.15 10.9 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|313116981|ref|YP_004038105.1| - 0.012 15.0 0.5 2.3 7.5 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|313116981|ref|YP_004038105.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|313116981|ref|YP_004038105.1| - 0.013 14.7 0.0 0.029 13.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|313116981|ref|YP_004038105.1| - 0.014 14.4 0.1 0.24 10.3 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|313116981|ref|YP_004038105.1| - 0.02 14.5 0.4 5.8 6.5 0.1 2.4 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|313116981|ref|YP_004038105.1| - 0.027 14.6 0.0 0.055 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|313116981|ref|YP_004038105.1| - 0.029 14.4 0.1 0.22 11.5 0.1 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|313116981|ref|YP_004038105.1| - 0.041 13.7 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase-like family Torsin PF06309.6 gi|313116981|ref|YP_004038105.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_11 PF13086.1 gi|313116981|ref|YP_004038105.1| - 0.063 12.8 0.0 0.11 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|313116981|ref|YP_004038105.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|313116981|ref|YP_004038105.1| - 0.099 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DXP_reductoisom PF02670.11 gi|313116981|ref|YP_004038105.1| - 0.11 13.0 1.1 0.24 11.9 0.1 2.0 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDE_Tnp_IS240 PF13610.1 gi|313116982|ref|YP_004038106.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116982|ref|YP_004038106.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116982|ref|YP_004038106.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116982|ref|YP_004038106.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116982|ref|YP_004038106.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116982|ref|YP_004038106.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease Cylicin_N PF15241.1 gi|313116983|ref|YP_004038107.1| - 0.19 11.5 2.3 0.25 11.2 0.2 2.1 1 1 1 2 2 2 0 Cylicin N-terminus Spore_coat_CotO PF14153.1 gi|313116983|ref|YP_004038107.1| - 0.24 10.8 11.6 0.28 10.5 8.0 1.1 1 0 0 1 1 1 0 Spore coat protein CotO Borrelia_P83 PF05262.6 gi|313116983|ref|YP_004038107.1| - 0.24 9.6 10.0 0.27 9.4 6.9 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Peptidase_S64 PF08192.6 gi|313116983|ref|YP_004038107.1| - 0.72 8.1 4.8 0.8 7.9 3.3 1.0 1 0 0 1 1 1 0 Peptidase family S64 Mucin PF01456.12 gi|313116983|ref|YP_004038107.1| - 0.92 9.2 8.3 1.2 8.9 5.7 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein Sec62 PF03839.11 gi|313116983|ref|YP_004038107.1| - 1.8 7.9 7.9 2.2 7.6 5.5 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 SAPS PF04499.10 gi|313116983|ref|YP_004038107.1| - 2.3 6.7 12.0 2.6 6.5 8.3 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF2201_N PF13203.1 gi|313116983|ref|YP_004038107.1| - 4.3 6.4 10.1 4.8 6.2 7.0 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain CDC45 PF02724.9 gi|313116983|ref|YP_004038107.1| - 4.9 5.0 15.0 5.9 4.7 10.4 1.1 1 0 0 1 1 1 0 CDC45-like protein Ycf1 PF05758.7 gi|313116983|ref|YP_004038107.1| - 5.2 4.6 10.1 5.8 4.4 7.0 1.0 1 0 0 1 1 1 0 Ycf1 Tom37_C PF11801.3 gi|313116983|ref|YP_004038107.1| - 5.5 6.8 7.4 6.9 6.4 5.1 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain PIH1 PF08190.7 gi|313116983|ref|YP_004038107.1| - 6.6 6.0 13.7 17 4.7 9.7 1.4 1 1 1 2 2 2 0 pre-RNA processing PIH1/Nop17 DDRGK PF09756.4 gi|313116983|ref|YP_004038107.1| - 7.2 5.9 17.6 11 5.3 12.2 1.4 1 0 0 1 1 1 0 DDRGK domain eIF-3c_N PF05470.7 gi|313116983|ref|YP_004038107.1| - 8 4.4 13.0 9.8 4.1 9.0 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus CbiA PF01656.18 gi|313116984|ref|YP_004038108.1| - 1.1e-31 109.7 0.0 1.3e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313116984|ref|YP_004038108.1| - 1e-14 54.7 0.0 1.7e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|313116984|ref|YP_004038108.1| - 4.6e-13 48.8 3.3 1.7e-10 40.4 2.3 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|313116984|ref|YP_004038108.1| - 8.6e-08 31.6 0.0 0.00038 19.7 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|313116984|ref|YP_004038108.1| - 4.2e-07 29.3 1.8 5.5e-06 25.6 0.4 3.1 1 1 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|313116984|ref|YP_004038108.1| - 7.2e-05 22.2 0.0 0.00024 20.5 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein ATP_bind_1 PF03029.12 gi|313116984|ref|YP_004038108.1| - 0.0058 16.2 4.0 0.83 9.1 2.7 3.1 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein UPF0146 PF03686.8 gi|313116984|ref|YP_004038108.1| - 0.036 13.8 0.8 2.1 8.2 0.0 2.6 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) AAA_16 PF13191.1 gi|313116984|ref|YP_004038108.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Pyridox_ox_2 PF12900.2 gi|313116985|ref|YP_004038109.1| - 1.2e-17 64.1 0.0 1.3e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|313116985|ref|YP_004038109.1| - 2.2e-05 24.3 0.0 2.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Nefa_Nip30_N PF10187.4 gi|313116985|ref|YP_004038109.1| - 0.12 12.5 0.0 0.91 9.7 0.1 2.0 1 1 1 2 2 2 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 PPDK_N PF01326.14 gi|313116986|ref|YP_004038110.1| - 7.8e-90 301.2 0.4 1.6e-89 300.2 0.2 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|313116986|ref|YP_004038110.1| - 2.6e-21 74.9 0.1 6.4e-21 73.7 0.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Beta-lactamase PF00144.19 gi|313116987|ref|YP_004038111.1| - 9.9e-52 175.9 1.4 1.8e-51 175.1 1.0 1.3 1 0 0 1 1 1 1 Beta-lactamase Usp PF00582.21 gi|313116988|ref|YP_004038112.1| - 0.00065 19.9 0.1 0.015 15.5 0.0 2.7 2 1 0 2 2 2 1 Universal stress protein family IU_nuc_hydro PF01156.14 gi|313116990|ref|YP_004038114.1| - 5.9e-83 278.6 0.9 7e-83 278.4 0.7 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase adh_short PF00106.20 gi|313116991|ref|YP_004038115.1| - 2.5e-36 125.1 0.3 3.3e-36 124.6 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313116991|ref|YP_004038115.1| - 2.1e-33 116.0 0.0 2.8e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313116991|ref|YP_004038115.1| - 2.9e-16 59.6 0.0 4.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|313116991|ref|YP_004038115.1| - 0.00051 19.7 0.1 0.00077 19.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|313116991|ref|YP_004038115.1| - 0.0012 18.3 0.1 0.002 17.6 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313116991|ref|YP_004038115.1| - 0.0015 17.3 0.2 0.0018 17.0 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 2-Hacid_dh_C PF02826.14 gi|313116991|ref|YP_004038115.1| - 0.008 15.3 0.7 0.013 14.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|313116991|ref|YP_004038115.1| - 0.011 15.5 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DFP PF04127.10 gi|313116991|ref|YP_004038115.1| - 0.025 14.2 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NmrA PF05368.8 gi|313116991|ref|YP_004038115.1| - 0.046 12.9 0.0 0.097 11.9 0.0 1.5 1 0 0 1 1 1 0 NmrA-like family PALP PF00291.20 gi|313116991|ref|YP_004038115.1| - 0.051 12.7 0.3 0.068 12.3 0.2 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme THF_DHG_CYH_C PF02882.14 gi|313116991|ref|YP_004038115.1| - 0.081 11.9 0.0 0.26 10.3 0.0 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|313116991|ref|YP_004038115.1| - 0.083 12.6 0.2 0.19 11.5 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PfkB PF00294.19 gi|313116992|ref|YP_004038116.1| - 2.7e-43 148.2 5.2 5.3e-43 147.2 3.6 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|313116992|ref|YP_004038116.1| - 5.8e-06 25.6 0.0 0.0003 20.0 0.0 2.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|313116992|ref|YP_004038116.1| - 0.00013 21.3 0.6 0.0009 18.5 0.4 2.0 1 1 0 1 1 1 1 Carbohydrate kinase PepSY_2 PF13670.1 gi|313116992|ref|YP_004038116.1| - 0.0015 18.4 0.6 0.0043 16.9 0.4 1.8 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF3035 PF11233.3 gi|313116992|ref|YP_004038116.1| - 0.026 14.5 0.1 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) Herpes_UL1 PF05259.6 gi|313116992|ref|YP_004038116.1| - 0.029 13.8 0.0 0.071 12.5 0.0 1.6 2 0 0 2 2 2 0 Herpesvirus glycoprotein L DUF4232 PF14016.1 gi|313116993|ref|YP_004038117.1| - 0.011 15.3 0.4 0.035 13.7 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) DAO PF01266.19 gi|313116994|ref|YP_004038118.1| - 6e-15 55.0 0.7 2.4e-07 30.0 0.1 2.2 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313116994|ref|YP_004038118.1| - 1.8e-09 37.7 0.1 5e-09 36.3 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313116994|ref|YP_004038118.1| - 6.6e-07 28.7 6.4 6.8e-07 28.7 0.6 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|313116994|ref|YP_004038118.1| - 8.6e-07 28.1 0.5 2.5e-06 26.6 0.3 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|313116994|ref|YP_004038118.1| - 1.3e-06 27.5 3.5 2.9e-06 26.4 0.1 2.7 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313116994|ref|YP_004038118.1| - 2.6e-06 27.3 0.2 6.4e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313116994|ref|YP_004038118.1| - 3.6e-06 25.6 0.1 9e-05 21.1 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|313116994|ref|YP_004038118.1| - 1.1e-05 24.5 0.0 0.018 13.9 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|313116994|ref|YP_004038118.1| - 1.1e-05 24.6 0.0 2.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|313116994|ref|YP_004038118.1| - 2.2e-05 24.5 0.1 0.17 11.9 0.0 2.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313116994|ref|YP_004038118.1| - 0.00048 19.2 0.1 0.0024 17.0 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|313116994|ref|YP_004038118.1| - 0.0019 18.5 0.4 0.0057 17.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313116994|ref|YP_004038118.1| - 0.0028 17.2 0.0 0.0058 16.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|313116994|ref|YP_004038118.1| - 0.055 13.1 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|313116994|ref|YP_004038118.1| - 0.24 11.1 4.6 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding TMP-TENI PF02581.12 gi|313116995|ref|YP_004038119.1| - 2.8e-60 202.5 3.3 3.9e-60 202.0 2.3 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|313116995|ref|YP_004038119.1| - 2.2e-06 26.9 3.9 2.2e-06 26.9 2.7 2.1 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|313116995|ref|YP_004038119.1| - 1.1e-05 24.6 2.1 1.1e-05 24.6 1.4 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|313116995|ref|YP_004038119.1| - 0.0014 17.9 8.1 0.0022 17.1 5.6 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|313116995|ref|YP_004038119.1| - 0.02 13.8 0.5 0.054 12.4 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|313116995|ref|YP_004038119.1| - 0.042 13.1 3.6 0.12 11.6 1.1 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein IMPDH PF00478.20 gi|313116995|ref|YP_004038119.1| - 0.36 9.6 5.5 0.73 8.6 3.5 1.5 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|313116995|ref|YP_004038119.1| - 0.51 9.2 6.0 17 4.3 2.1 2.7 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|313116995|ref|YP_004038119.1| - 0.84 8.8 8.2 2 7.6 0.1 2.6 1 1 2 3 3 3 0 PcrB family HK PF02110.10 gi|313116996|ref|YP_004038120.1| - 2.9e-65 219.8 5.4 3.6e-65 219.5 3.7 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|313116996|ref|YP_004038120.1| - 1.9e-05 24.0 0.7 2.6e-05 23.5 0.5 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|313116996|ref|YP_004038120.1| - 0.12 11.5 8.3 0.044 13.0 3.1 1.8 1 1 1 2 2 2 0 Carbohydrate kinase adh_short PF00106.20 gi|313116997|ref|YP_004038121.1| - 1.3e-32 113.0 4.5 1.7e-32 112.6 3.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313116997|ref|YP_004038121.1| - 1.8e-26 93.3 0.0 2.1e-26 93.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313116997|ref|YP_004038121.1| - 9e-21 74.3 2.0 1.2e-20 73.9 1.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313116997|ref|YP_004038121.1| - 2.8e-09 36.7 0.3 5.8e-09 35.7 0.2 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313116997|ref|YP_004038121.1| - 0.00019 21.4 2.4 0.0003 20.8 1.7 1.4 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|313116997|ref|YP_004038121.1| - 0.00025 20.0 0.0 0.00028 19.9 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|313116997|ref|YP_004038121.1| - 0.0026 16.5 0.2 0.0034 16.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313116997|ref|YP_004038121.1| - 0.012 14.4 0.1 0.019 13.8 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|313116997|ref|YP_004038121.1| - 0.093 11.9 0.3 0.17 11.1 0.2 1.4 2 0 0 2 2 2 0 NmrA-like family Phos_pyr_kin PF08543.7 gi|313116998|ref|YP_004038122.1| - 4.2e-84 281.5 0.1 5.2e-84 281.2 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|313116998|ref|YP_004038122.1| - 6.6e-10 38.6 0.6 9.2e-10 38.1 0.4 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|313116998|ref|YP_004038122.1| - 0.011 15.0 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.10 gi|313116998|ref|YP_004038122.1| - 0.016 14.4 0.1 0.17 11.0 0.0 2.0 2 0 0 2 2 2 0 Hydroxyethylthiazole kinase family DrsE_2 PF13686.1 gi|313116999|ref|YP_004038123.1| - 1.3e-52 177.4 0.0 1.6e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|313116999|ref|YP_004038123.1| - 1e-06 28.7 0.0 1.3e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|313116999|ref|YP_004038123.1| - 0.026 14.6 0.0 0.059 13.5 0.0 1.5 1 1 0 1 1 1 0 DNA packaging protein FI TusA PF01206.12 gi|313117000|ref|YP_004038124.1| - 3.8e-21 74.4 0.0 4.3e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|313117000|ref|YP_004038124.1| - 0.055 13.0 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.22 gi|313117001|ref|YP_004038125.1| - 7.2e-26 91.0 4.6 1.1e-25 90.5 3.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|313117001|ref|YP_004038125.1| - 1.4e-10 41.5 0.0 2.5e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|313117001|ref|YP_004038125.1| - 0.0095 15.5 0.2 0.083 12.4 0.2 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313117001|ref|YP_004038125.1| - 0.078 12.6 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|313117002|ref|YP_004038126.1| - 7.1e-17 60.8 10.2 1.9e-16 59.5 2.6 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|313117002|ref|YP_004038126.1| - 1e-10 41.4 20.6 5.2e-10 39.1 6.2 3.0 3 0 0 3 3 3 2 Sulphur transport Sulf_transp PF04143.9 gi|313117003|ref|YP_004038127.1| - 4.2e-09 36.2 7.9 4.2e-09 36.2 5.5 2.8 3 0 0 3 3 3 2 Sulphur transport DUF624 PF04854.9 gi|313117003|ref|YP_004038127.1| - 5.6 6.9 6.7 20 5.0 0.6 2.9 1 1 1 2 2 2 0 Protein of unknown function, DUF624 Ribonuc_red_sm PF00268.16 gi|313117005|ref|YP_004038129.1| - 2.4e-42 144.8 0.0 7.1e-42 143.3 0.0 1.6 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain Ribonuc_red_lgC PF02867.10 gi|313117006|ref|YP_004038130.1| - 6.8e-199 661.8 0.0 8.7e-199 661.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|313117006|ref|YP_004038130.1| - 2.2e-21 75.4 0.0 1.7e-20 72.5 0.0 2.4 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|313117007|ref|YP_004038131.1| - 9.4e-18 64.4 0.1 1.3e-17 64.0 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.2 gi|313117007|ref|YP_004038131.1| - 0.0011 18.7 1.4 0.0016 18.1 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|313117007|ref|YP_004038131.1| - 0.018 14.6 3.4 0.031 13.8 2.3 1.4 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|313117007|ref|YP_004038131.1| - 0.071 12.4 0.5 0.071 12.4 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.8 gi|313117007|ref|YP_004038131.1| - 0.1 12.3 0.6 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.1 gi|313117007|ref|YP_004038131.1| - 0.19 12.1 1.7 1.1 9.7 0.6 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Na_Ca_ex PF01699.19 gi|313117008|ref|YP_004038132.1| - 1.7e-38 131.4 26.8 1.1e-20 73.6 6.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|313117008|ref|YP_004038132.1| - 0.32 11.0 2.8 0.87 9.6 0.0 2.9 3 0 0 3 3 3 0 2TM domain APH PF01636.18 gi|313117010|ref|YP_004038134.1| - 1.9e-21 76.9 2.8 1.9e-21 76.9 2.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|313117010|ref|YP_004038134.1| - 4.5e-07 29.1 0.0 6.9e-06 25.2 0.0 2.4 1 1 0 1 1 1 1 Fructosamine kinase HD PF01966.17 gi|313117010|ref|YP_004038134.1| - 0.048 13.6 0.3 0.18 11.8 0.3 1.8 1 1 0 1 1 1 0 HD domain Lon_2 PF13337.1 gi|313117010|ref|YP_004038134.1| - 0.19 10.0 0.0 0.27 9.5 0.0 1.1 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease Peptidase_S8 PF00082.17 gi|313117011|ref|YP_004038135.1| - 8.2e-28 97.3 0.2 1.1e-27 96.8 0.1 1.2 1 0 0 1 1 1 1 Subtilase family Rhomboid PF01694.17 gi|313117012|ref|YP_004038136.1| - 2e-18 66.8 15.7 2e-18 66.8 10.9 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|313117012|ref|YP_004038136.1| - 0.14 12.5 3.4 0.22 11.8 0.0 2.5 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) DUF1673 PF07895.6 gi|313117012|ref|YP_004038136.1| - 1.5 8.3 5.0 4.3 6.7 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1673) HTH_24 PF13412.1 gi|313117013|ref|YP_004038137.1| - 7.5e-07 28.4 0.0 1.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117013|ref|YP_004038137.1| - 9e-07 28.4 0.1 1.1e-06 28.2 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313117013|ref|YP_004038137.1| - 9.3e-07 28.4 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|313117013|ref|YP_004038137.1| - 2e-05 23.8 0.1 2.9e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|313117013|ref|YP_004038137.1| - 7.3e-05 23.0 0.1 9.1e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|313117013|ref|YP_004038137.1| - 0.00025 20.5 0.2 0.00036 19.9 0.1 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|313117013|ref|YP_004038137.1| - 0.00028 20.9 0.0 0.0004 20.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|313117013|ref|YP_004038137.1| - 0.00065 18.9 0.0 0.00083 18.6 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.15 gi|313117013|ref|YP_004038137.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|313117013|ref|YP_004038137.1| - 0.00087 18.9 0.2 0.0013 18.4 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313117013|ref|YP_004038137.1| - 0.00095 18.9 0.1 0.0014 18.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|313117013|ref|YP_004038137.1| - 0.0016 18.0 0.1 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|313117013|ref|YP_004038137.1| - 0.0031 17.1 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|313117013|ref|YP_004038137.1| - 0.0034 16.8 0.0 0.004 16.6 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|313117013|ref|YP_004038137.1| - 0.0093 15.7 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|313117013|ref|YP_004038137.1| - 0.02 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|313117013|ref|YP_004038137.1| - 0.035 14.1 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|313117013|ref|YP_004038137.1| - 0.045 14.1 0.0 0.05 14.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal RepL PF05732.6 gi|313117013|ref|YP_004038137.1| - 0.059 12.5 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_41 PF14502.1 gi|313117013|ref|YP_004038137.1| - 0.059 12.9 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.6 gi|313117013|ref|YP_004038137.1| - 0.099 12.3 0.1 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal Pyr_redox_2 PF07992.9 gi|313117014|ref|YP_004038138.1| - 2.1e-16 60.3 0.9 3.1e-13 50.0 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313117014|ref|YP_004038138.1| - 1.1e-13 50.7 0.0 1.6e-06 27.2 0.0 2.0 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313117014|ref|YP_004038138.1| - 4.9e-10 38.4 0.0 2.6e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|313117014|ref|YP_004038138.1| - 1.6e-09 37.6 0.1 4e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|313117014|ref|YP_004038138.1| - 5.6e-08 33.0 0.6 0.01 15.8 0.0 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313117014|ref|YP_004038138.1| - 2.7e-07 29.8 0.6 3.9e-05 22.6 0.0 2.4 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|313117014|ref|YP_004038138.1| - 3.4e-07 29.4 0.2 8.6e-07 28.1 0.0 1.7 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|313117014|ref|YP_004038138.1| - 1.3e-06 27.6 0.1 8.7e-05 21.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313117014|ref|YP_004038138.1| - 4.2e-06 26.7 0.0 1.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|313117014|ref|YP_004038138.1| - 9.4e-06 24.5 1.8 0.002 16.8 0.3 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|313117014|ref|YP_004038138.1| - 3.3e-05 22.9 0.1 0.064 12.1 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|313117014|ref|YP_004038138.1| - 5.6e-05 22.3 0.2 0.0001 21.5 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313117014|ref|YP_004038138.1| - 0.00056 19.0 0.0 0.0014 17.7 0.0 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|313117014|ref|YP_004038138.1| - 0.0016 18.7 0.0 0.0043 17.4 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313117014|ref|YP_004038138.1| - 0.0033 17.0 0.4 0.011 15.2 0.0 1.9 1 1 1 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|313117014|ref|YP_004038138.1| - 0.031 13.9 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|313117014|ref|YP_004038138.1| - 0.076 13.2 0.0 0.1 12.8 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding Cytomega_UL20A PF05984.7 gi|313117014|ref|YP_004038138.1| - 0.14 12.3 2.8 1.7 8.9 0.6 2.3 1 1 0 2 2 2 0 Cytomegalovirus UL20A protein UPF0104 PF03706.8 gi|313117015|ref|YP_004038139.1| - 8.1e-15 54.8 28.8 1.1e-14 54.4 19.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) PAS_4 PF08448.5 gi|313117016|ref|YP_004038140.1| - 9.3e-40 135.0 12.9 7.5e-13 48.4 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|313117016|ref|YP_004038140.1| - 3.4e-32 110.8 0.3 7.1e-12 45.6 0.0 4.8 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|313117016|ref|YP_004038140.1| - 3.8e-28 97.5 0.4 2.2e-12 46.7 0.0 5.3 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|313117016|ref|YP_004038140.1| - 1.5e-21 76.5 0.0 3.8e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|313117016|ref|YP_004038140.1| - 7.1e-20 70.1 1.3 1.2e-06 28.1 0.0 4.9 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|313117016|ref|YP_004038140.1| - 1.6e-17 63.1 0.0 4.1e-17 61.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313117016|ref|YP_004038140.1| - 8.5e-11 41.7 1.5 8.5e-11 41.7 1.0 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|313117016|ref|YP_004038140.1| - 6.1e-09 35.8 0.4 0.015 15.2 0.0 5.3 4 2 1 5 5 5 2 PAS fold PAS_3 PF08447.6 gi|313117016|ref|YP_004038140.1| - 4.9e-08 32.9 0.0 0.0016 18.4 0.0 3.6 3 0 0 3 3 3 2 PAS fold OKR_DC_1_N PF03709.10 gi|313117016|ref|YP_004038140.1| - 0.00083 19.3 0.1 0.02 14.9 0.0 2.9 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313117016|ref|YP_004038140.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OrfB_IS605 PF01385.14 gi|313117017|ref|YP_004038141.1| - 1.8e-44 151.8 0.0 2.4e-44 151.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313117017|ref|YP_004038141.1| - 5.9e-24 83.5 2.5 1.3e-23 82.4 1.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|313117017|ref|YP_004038141.1| - 0.18 11.8 2.7 0.5 10.4 1.9 1.8 1 0 0 1 1 1 0 C1-like domain Ribosomal_L37ae PF01780.14 gi|313117017|ref|YP_004038141.1| - 0.62 9.9 3.3 0.53 10.1 0.4 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.7 gi|313117017|ref|YP_004038141.1| - 6.8 6.1 8.3 52 3.2 1.6 2.9 1 1 1 2 2 2 0 TFIIB zinc-binding Peptidase_C25_C PF03785.9 gi|313117018|ref|YP_004038142.1| - 0.038 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain zinc-ribbons_6 PF07191.7 gi|313117019|ref|YP_004038143.1| - 0.007 16.1 0.7 0.0099 15.6 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons DRP PF06044.7 gi|313117019|ref|YP_004038143.1| - 0.0077 15.2 0.1 0.0077 15.2 0.1 1.0 1 0 0 1 1 1 1 Dam-replacing family RNA_POL_M_15KD PF02150.11 gi|313117019|ref|YP_004038143.1| - 0.0087 15.7 1.0 0.014 15.0 0.7 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-FPG_IleRS PF06827.9 gi|313117019|ref|YP_004038143.1| - 0.025 14.1 2.8 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS C1_1 PF00130.17 gi|313117019|ref|YP_004038143.1| - 0.047 13.4 0.5 0.064 12.9 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ISL3 PF14690.1 gi|313117019|ref|YP_004038143.1| - 0.051 13.6 0.9 3 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|313117019|ref|YP_004038143.1| - 0.055 13.7 0.7 0.076 13.3 0.5 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|313117019|ref|YP_004038143.1| - 0.095 11.9 0.3 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|313117019|ref|YP_004038143.1| - 0.1 11.9 0.9 0.22 10.8 0.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding PRKCSH-like PF12999.2 gi|313117019|ref|YP_004038143.1| - 0.13 11.8 0.5 0.14 11.7 0.4 1.1 1 0 0 1 1 1 0 Glucosidase II beta subunit-like DZR PF12773.2 gi|313117019|ref|YP_004038143.1| - 0.13 12.0 1.1 0.29 10.9 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|313117019|ref|YP_004038143.1| - 0.14 11.7 1.1 0.72 9.3 0.1 1.9 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-trcl PF13451.1 gi|313117019|ref|YP_004038143.1| - 0.17 11.5 1.9 1.5 8.5 1.3 2.0 1 1 0 1 1 1 0 Probable zinc-binding domain GFA PF04828.9 gi|313117019|ref|YP_004038143.1| - 0.3 11.0 1.6 4.4 7.3 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|313117019|ref|YP_004038143.1| - 0.67 9.5 3.8 16 5.0 2.6 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|313117019|ref|YP_004038143.1| - 0.91 9.1 3.6 18 4.9 2.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-B_box PF00643.19 gi|313117019|ref|YP_004038143.1| - 2.2 8.2 4.6 9.1 6.2 3.2 1.8 1 1 0 1 1 1 0 B-box zinc finger Usp PF00582.21 gi|313117020|ref|YP_004038144.1| - 3.8e-62 208.5 6.7 4.4e-34 117.6 0.6 2.1 2 0 0 2 2 2 2 Universal stress protein family Transketolase_C PF02780.15 gi|313117020|ref|YP_004038144.1| - 0.03 14.2 0.5 0.12 12.2 0.0 2.2 2 1 0 2 2 2 0 Transketolase, C-terminal domain FR47 PF08445.5 gi|313117020|ref|YP_004038144.1| - 0.05 13.3 0.1 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein Mur_ligase PF01225.20 gi|313117020|ref|YP_004038144.1| - 0.12 12.4 0.5 1.9 8.5 0.0 2.9 3 0 0 3 3 3 0 Mur ligase family, catalytic domain SHOCT PF09851.4 gi|313117021|ref|YP_004038145.1| - 3.6e-08 32.5 0.3 5.1e-08 32.1 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313117021|ref|YP_004038145.1| - 9.3e-05 22.1 0.4 0.0002 21.0 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) VIT1 PF01988.14 gi|313117021|ref|YP_004038145.1| - 0.00012 21.6 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 VIT family TAFH PF07531.9 gi|313117021|ref|YP_004038145.1| - 0.013 15.1 0.1 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 NHR1 homology to TAF GvpG PF05120.7 gi|313117021|ref|YP_004038145.1| - 0.022 14.5 0.6 0.033 13.9 0.4 1.2 1 0 0 1 1 1 0 Gas vesicle protein G SelB-wing_2 PF09106.6 gi|313117021|ref|YP_004038145.1| - 0.027 14.3 0.1 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix YihI PF04220.7 gi|313117021|ref|YP_004038145.1| - 0.059 12.6 0.1 0.076 12.3 0.1 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) Amastin PF07344.6 gi|313117021|ref|YP_004038145.1| - 0.075 12.6 0.4 0.095 12.3 0.3 1.1 1 0 0 1 1 1 0 Amastin surface glycoprotein DUF3650 PF12368.3 gi|313117021|ref|YP_004038145.1| - 0.089 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) Tetraspannin PF00335.15 gi|313117021|ref|YP_004038145.1| - 4.2 6.5 6.4 14 4.8 5.0 1.3 1 1 0 1 1 1 0 Tetraspanin family COX1 PF00115.15 gi|313117022|ref|YP_004038146.1| - 1.5e-05 23.8 45.3 0.0013 17.3 11.3 4.7 1 1 2 4 4 4 2 Cytochrome C and Quinol oxidase polypeptide I Oxidored_molyb PF00174.14 gi|313117023|ref|YP_004038147.1| - 2.8e-15 56.1 0.0 3.2e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cupin_2 PF07883.6 gi|313117024|ref|YP_004038148.1| - 2.1e-06 27.1 0.1 3.1e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|313117024|ref|YP_004038148.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|313117024|ref|YP_004038148.1| - 0.068 12.6 0.0 0.083 12.3 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_2 PF07883.6 gi|313117025|ref|YP_004038149.1| - 1.9e-08 33.6 0.5 3.6e-08 32.7 0.1 1.6 1 1 1 2 2 2 1 Cupin domain AraC_binding_2 PF14525.1 gi|313117025|ref|YP_004038149.1| - 0.00077 19.0 0.1 0.001 18.6 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.14 gi|313117025|ref|YP_004038149.1| - 0.0099 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain HutD PF05962.6 gi|313117025|ref|YP_004038149.1| - 0.023 14.4 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 HutD DUF1637 PF07847.7 gi|313117025|ref|YP_004038149.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Pirin_C PF05726.8 gi|313117025|ref|YP_004038149.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_7 PF12973.2 gi|313117025|ref|YP_004038149.1| - 0.13 12.0 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_3 PF05899.7 gi|313117025|ref|YP_004038149.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PaaB PF06243.6 gi|313117026|ref|YP_004038150.1| - 1.8e-16 60.0 0.5 2.3e-16 59.6 0.4 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|313117027|ref|YP_004038151.1| - 1.8e-24 86.7 0.0 4.3e-24 85.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|313117027|ref|YP_004038151.1| - 4.3e-11 43.0 0.0 9.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|313117027|ref|YP_004038151.1| - 2.6e-09 37.1 0.0 9.5e-09 35.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|313117027|ref|YP_004038151.1| - 0.04 14.1 0.1 1.9 8.7 0.0 2.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF1906 PF08924.6 gi|313117027|ref|YP_004038151.1| - 0.088 12.6 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DUF2249 PF10006.4 gi|313117028|ref|YP_004038152.1| - 3.6e-26 90.5 0.8 4e-26 90.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|313117028|ref|YP_004038152.1| - 0.015 14.9 0.0 0.039 13.5 0.0 1.6 2 0 0 2 2 2 0 Sulfurtransferase TusA Elf1 PF05129.8 gi|313117030|ref|YP_004038154.1| - 0.0058 16.2 0.4 0.0062 16.2 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|313117030|ref|YP_004038154.1| - 0.056 13.3 0.9 0.059 13.3 0.6 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|313117030|ref|YP_004038154.1| - 0.34 10.6 4.6 0.62 9.7 3.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 HTH_10 PF04967.7 gi|313117031|ref|YP_004038155.1| - 1.4e-17 63.0 0.0 2.2e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|313117031|ref|YP_004038155.1| - 0.034 13.4 0.0 0.077 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3587 PF12132.3 gi|313117031|ref|YP_004038155.1| - 0.045 12.9 0.8 0.077 12.2 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3587) LexA_DNA_bind PF01726.11 gi|313117031|ref|YP_004038155.1| - 0.074 12.6 0.1 0.22 11.1 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain Pcc1 PF09341.5 gi|313117031|ref|YP_004038155.1| - 0.1 12.6 0.3 0.53 10.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor Pcc1 GerE PF00196.14 gi|313117031|ref|YP_004038155.1| - 0.12 11.7 0.4 15 4.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family NfeD PF01957.13 gi|313117032|ref|YP_004038156.1| - 0.47 10.5 4.2 1 9.4 0.6 2.5 3 0 0 3 3 3 0 NfeD-like C-terminal, partner-binding DUF805 PF05656.9 gi|313117032|ref|YP_004038156.1| - 1.1 9.0 5.7 8.6 6.2 0.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF805) DUF4131 PF13567.1 gi|313117032|ref|YP_004038156.1| - 4.6 6.6 5.8 21 4.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Sensor PF13796.1 gi|313117032|ref|YP_004038156.1| - 5.4 6.5 16.8 0.2 11.2 1.1 2.9 2 1 1 3 3 3 0 Putative sensor Rieske PF00355.21 gi|313117033|ref|YP_004038157.1| - 1.1e-13 50.5 0.1 1.7e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HCV_NS1 PF01560.12 gi|313117033|ref|YP_004038157.1| - 0.086 11.2 0.2 0.12 10.8 0.1 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 Cytochrom_B_N_2 PF13631.1 gi|313117034|ref|YP_004038158.1| - 8.2e-42 142.8 0.7 8.2e-42 142.8 0.5 3.3 4 1 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|313117034|ref|YP_004038158.1| - 1.1e-07 31.4 13.7 1.1e-07 31.4 9.5 2.5 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|313117034|ref|YP_004038158.1| - 0.00041 20.5 0.8 0.00041 20.5 0.5 2.5 3 0 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD SP_C-Propep PF08999.5 gi|313117034|ref|YP_004038158.1| - 0.05 13.0 0.2 0.22 11.0 0.0 2.1 3 0 0 3 3 3 0 Surfactant protein C, N terminal propeptide DUF3188 PF11384.3 gi|313117035|ref|YP_004038159.1| - 0.069 12.7 1.3 0.099 12.2 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) Molybdopterin PF00384.17 gi|313117036|ref|YP_004038160.1| - 6.2e-93 311.8 0.0 9.6e-93 311.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|313117036|ref|YP_004038160.1| - 2.2e-20 72.4 0.0 4.6e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|313117036|ref|YP_004038160.1| - 0.014 15.1 0.5 0.033 14.0 0.3 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|313117037|ref|YP_004038161.1| - 9.5e-35 118.4 6.3 9.5e-35 118.4 4.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313117037|ref|YP_004038161.1| - 3.2e-15 56.2 3.1 3.9e-08 33.5 0.0 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313117037|ref|YP_004038161.1| - 1.4e-11 43.9 17.9 1.4e-06 27.9 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313117037|ref|YP_004038161.1| - 8.7e-10 38.7 16.7 0.015 15.5 0.2 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313117037|ref|YP_004038161.1| - 6.9e-07 28.8 28.5 3.4e-05 23.4 2.1 4.7 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313117037|ref|YP_004038161.1| - 0.00053 19.7 18.8 0.018 14.8 1.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117037|ref|YP_004038161.1| - 0.00071 19.0 29.7 0.013 15.1 1.9 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313117037|ref|YP_004038161.1| - 0.0011 18.7 26.9 0.054 13.3 0.7 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|313117037|ref|YP_004038161.1| - 0.0013 19.0 20.9 0.037 14.3 0.1 4.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117037|ref|YP_004038161.1| - 0.0062 16.5 18.7 0.014 15.4 5.4 3.7 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|313117037|ref|YP_004038161.1| - 0.0092 16.5 15.1 0.49 10.9 0.1 3.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|313117037|ref|YP_004038161.1| - 0.015 15.7 5.9 0.015 15.7 4.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|313117037|ref|YP_004038161.1| - 0.063 13.7 0.9 0.063 13.7 0.6 3.6 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313117037|ref|YP_004038161.1| - 0.12 12.7 0.1 0.12 12.7 0.1 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|313117037|ref|YP_004038161.1| - 0.94 9.9 31.2 0.083 13.2 1.3 4.4 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313117037|ref|YP_004038161.1| - 9.2 7.1 27.8 24 5.7 8.1 4.4 3 2 1 4 4 4 0 4Fe-4S double cluster binding domain EB_dh PF09459.5 gi|313117038|ref|YP_004038162.1| - 1.9e-26 93.1 8.2 1.5e-24 86.8 5.7 2.6 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|313117039|ref|YP_004038163.1| - 2.6e-08 33.8 2.4 8e-08 32.2 0.4 2.6 1 1 1 2 2 2 1 Nitrate reductase delta subunit CcoS PF03597.10 gi|313117040|ref|YP_004038164.1| - 0.016 14.6 0.6 0.016 14.6 0.4 3.5 4 1 0 4 4 4 0 Cytochrome oxidase maturation protein cbb3-type HEAT_2 PF13646.1 gi|313117041|ref|YP_004038165.1| - 2.6e-26 91.7 26.3 9.5e-15 54.6 3.1 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|313117041|ref|YP_004038165.1| - 1.3e-10 40.4 13.1 0.00016 21.4 0.0 5.8 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|313117041|ref|YP_004038165.1| - 1.2e-05 25.5 25.2 0.066 13.7 0.7 5.8 3 2 3 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|313117041|ref|YP_004038165.1| - 0.0031 17.8 16.6 0.97 10.0 0.1 5.6 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|313117041|ref|YP_004038165.1| - 0.042 14.2 0.0 5.9 7.3 0.0 2.7 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region ParA PF10609.4 gi|313117042|ref|YP_004038166.1| - 2.3e-26 91.4 0.1 4.1e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|313117042|ref|YP_004038166.1| - 1.7e-18 66.7 0.1 3.5e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|313117042|ref|YP_004038166.1| - 4.5e-16 58.1 0.1 1.2e-15 56.8 0.1 1.8 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|313117042|ref|YP_004038166.1| - 6.7e-11 42.0 4.7 6.7e-11 42.0 3.3 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|313117042|ref|YP_004038166.1| - 2.8e-05 24.1 0.0 0.00013 21.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|313117042|ref|YP_004038166.1| - 4e-05 23.3 0.7 0.005 16.4 0.0 2.5 3 0 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|313117042|ref|YP_004038166.1| - 0.00091 18.3 2.4 0.26 10.3 1.3 2.7 2 1 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.6 gi|313117042|ref|YP_004038166.1| - 0.0046 16.0 0.1 0.0084 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|313117042|ref|YP_004038166.1| - 0.059 12.7 3.1 0.19 11.1 0.2 2.4 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|313117042|ref|YP_004038166.1| - 0.097 11.7 0.1 0.25 10.4 0.1 1.7 1 0 0 1 1 1 0 ATPase MipZ MFS_1 PF07690.11 gi|313117043|ref|YP_004038167.1| - 7.5e-39 133.4 49.8 7.7e-36 123.5 23.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|313117043|ref|YP_004038167.1| - 2.4e-05 23.0 10.0 0.00019 20.1 2.0 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|313117043|ref|YP_004038167.1| - 3.1e-05 23.6 17.6 0.023 14.4 0.1 4.0 4 1 0 4 4 4 3 MFS_1 like family OATP PF03137.15 gi|313117043|ref|YP_004038167.1| - 0.0017 16.4 0.1 0.0017 16.4 0.0 2.6 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.8 gi|313117043|ref|YP_004038167.1| - 0.037 12.1 24.2 0.018 13.1 10.2 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector GFO_IDH_MocA PF01408.17 gi|313117044|ref|YP_004038168.1| - 7.3e-25 87.8 0.0 1.2e-24 87.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313117044|ref|YP_004038168.1| - 1.3e-06 28.1 0.0 2.3e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|313117044|ref|YP_004038168.1| - 0.094 13.1 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent BPD_transp_1 PF00528.17 gi|313117045|ref|YP_004038169.1| - 1.6e-31 109.2 7.1 1.6e-31 109.2 4.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117045|ref|YP_004038169.1| - 3.8e-05 22.9 0.8 9.7e-05 21.6 0.6 1.7 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|313117046|ref|YP_004038170.1| - 3.5e-40 137.4 7.3 3.5e-40 137.4 5.1 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313117047|ref|YP_004038171.1| - 2.8e-64 215.4 0.0 8.8e-31 107.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|313117047|ref|YP_004038171.1| - 1.2e-37 128.0 1.9 3.3e-18 65.7 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117047|ref|YP_004038171.1| - 1.3e-22 81.1 3.8 7.5e-10 39.2 0.0 4.1 2 2 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|313117047|ref|YP_004038171.1| - 5.6e-17 61.7 0.3 7.4e-08 31.8 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313117047|ref|YP_004038171.1| - 9.1e-09 35.5 1.5 0.0032 17.4 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|313117047|ref|YP_004038171.1| - 5.2e-08 32.6 0.0 0.016 14.6 0.1 2.9 2 2 1 3 3 3 2 AAA-like domain SbcCD_C PF13558.1 gi|313117047|ref|YP_004038171.1| - 1.2e-07 31.5 0.1 0.042 13.7 0.0 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|313117047|ref|YP_004038171.1| - 2.5e-07 30.1 1.0 0.018 14.5 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313117047|ref|YP_004038171.1| - 3.1e-07 30.5 4.1 0.021 14.9 0.5 3.8 2 2 0 2 2 2 2 AAA domain MobB PF03205.9 gi|313117047|ref|YP_004038171.1| - 8.8e-07 28.7 0.1 0.02 14.5 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|313117047|ref|YP_004038171.1| - 1.9e-06 27.1 1.4 0.0087 15.2 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313117047|ref|YP_004038171.1| - 2.5e-06 27.0 0.3 0.011 15.1 0.0 3.7 4 0 0 4 4 4 1 AAA domain ATP-synt_ab PF00006.20 gi|313117047|ref|YP_004038171.1| - 3e-06 26.9 0.0 0.00091 18.7 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|313117047|ref|YP_004038171.1| - 2.9e-05 23.7 3.2 0.58 9.7 0.0 3.5 3 0 0 3 3 3 2 NACHT domain DUF87 PF01935.12 gi|313117047|ref|YP_004038171.1| - 4.1e-05 23.5 0.9 0.18 11.5 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF87 AAA_15 PF13175.1 gi|313117047|ref|YP_004038171.1| - 0.00012 21.2 0.4 0.028 13.4 0.0 3.4 4 0 0 4 4 4 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|313117047|ref|YP_004038171.1| - 0.00018 21.0 0.2 4.5 6.6 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|313117047|ref|YP_004038171.1| - 0.00024 19.7 0.9 1.5 7.1 0.0 3.7 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.1 gi|313117047|ref|YP_004038171.1| - 0.00034 20.9 0.1 0.92 9.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|313117047|ref|YP_004038171.1| - 0.00035 20.1 0.1 0.89 8.9 0.0 2.9 3 0 0 3 3 3 2 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|313117047|ref|YP_004038171.1| - 0.00081 18.6 0.2 0.8 8.8 0.0 3.4 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313117047|ref|YP_004038171.1| - 0.00084 20.1 0.1 0.91 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|313117047|ref|YP_004038171.1| - 0.0009 18.8 0.1 0.26 10.8 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.21 gi|313117047|ref|YP_004038171.1| - 0.0026 17.2 2.3 3.4 7.1 0.0 3.6 4 0 0 4 4 4 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|313117047|ref|YP_004038171.1| - 0.0035 17.3 0.1 2.8 7.9 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|313117047|ref|YP_004038171.1| - 0.0037 17.4 0.3 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|313117047|ref|YP_004038171.1| - 0.0046 16.6 1.9 2.7 7.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313117047|ref|YP_004038171.1| - 0.0052 16.9 0.0 6.1 7.0 0.0 2.9 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|313117047|ref|YP_004038171.1| - 0.006 15.4 0.2 2.6 6.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_33 PF13671.1 gi|313117047|ref|YP_004038171.1| - 0.0068 16.2 0.6 1.7 8.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|313117047|ref|YP_004038171.1| - 0.0081 15.8 0.2 0.38 10.4 0.0 2.6 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|313117047|ref|YP_004038171.1| - 0.0086 16.4 0.0 1.3 9.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|313117047|ref|YP_004038171.1| - 0.014 14.5 0.1 5.5 6.0 0.0 2.5 2 0 0 2 2 2 0 KaiC Methyltransf_32 PF13679.1 gi|313117047|ref|YP_004038171.1| - 0.017 14.7 0.1 0.075 12.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain CbiA PF01656.18 gi|313117047|ref|YP_004038171.1| - 0.019 14.3 1.4 0.16 11.3 0.1 2.7 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|313117047|ref|YP_004038171.1| - 0.031 13.9 0.7 0.45 10.1 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase Hpr_kinase_C PF07475.7 gi|313117047|ref|YP_004038171.1| - 0.045 13.0 1.1 6.1 6.1 0.0 2.5 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Miro PF08477.8 gi|313117047|ref|YP_004038171.1| - 0.049 14.1 0.0 10 6.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein DUF2075 PF09848.4 gi|313117047|ref|YP_004038171.1| - 0.049 12.5 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) tRNA_lig_kinase PF08303.6 gi|313117047|ref|YP_004038171.1| - 0.059 13.2 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 tRNA ligase kinase domain Septin PF00735.13 gi|313117047|ref|YP_004038171.1| - 0.06 12.3 0.3 2.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Septin T2SE PF00437.15 gi|313117047|ref|YP_004038171.1| - 0.065 12.1 0.2 0.89 8.3 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein TIP49 PF06068.8 gi|313117047|ref|YP_004038171.1| - 0.071 11.8 0.0 0.14 10.8 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus AAA_19 PF13245.1 gi|313117047|ref|YP_004038171.1| - 0.14 11.8 0.6 3.8 7.3 0.0 3.2 4 0 0 4 4 2 0 Part of AAA domain Kazal_1 PF00050.16 gi|313117047|ref|YP_004038171.1| - 0.54 10.3 3.2 2.2 8.3 0.0 2.8 3 0 0 3 3 3 0 Kazal-type serine protease inhibitor domain SBP_bac_5 PF00496.17 gi|313117048|ref|YP_004038172.1| - 1.2e-75 254.7 1.2 1.3e-75 254.5 0.5 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle IclR PF01614.13 gi|313117049|ref|YP_004038173.1| - 2.4e-29 101.6 0.0 3.6e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117049|ref|YP_004038173.1| - 1.8e-08 33.8 0.0 4.8e-08 32.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117049|ref|YP_004038173.1| - 5e-08 32.4 0.0 1.9e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117049|ref|YP_004038173.1| - 7.4e-07 28.8 0.0 2.2e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117049|ref|YP_004038173.1| - 4.7e-06 26.2 0.0 2.1e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117049|ref|YP_004038173.1| - 4.4e-05 23.0 0.0 9.8e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313117049|ref|YP_004038173.1| - 5.5e-05 22.4 0.0 0.00024 20.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|313117049|ref|YP_004038173.1| - 6.4e-05 22.5 0.0 0.00024 20.6 0.0 2.1 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313117049|ref|YP_004038173.1| - 6.9e-05 22.4 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|313117049|ref|YP_004038173.1| - 0.0026 17.7 0.2 0.017 15.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|313117049|ref|YP_004038173.1| - 0.0037 17.1 0.0 0.0099 15.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|313117049|ref|YP_004038173.1| - 0.012 15.2 0.0 0.042 13.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_22 PF13309.1 gi|313117049|ref|YP_004038173.1| - 0.045 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.2 gi|313117049|ref|YP_004038173.1| - 0.051 13.8 0.0 0.39 10.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|313117049|ref|YP_004038173.1| - 0.058 12.9 0.1 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_45 PF14947.1 gi|313117049|ref|YP_004038173.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|313117049|ref|YP_004038173.1| - 0.11 12.1 0.0 0.47 10.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_27 PF13463.1 gi|313117049|ref|YP_004038173.1| - 0.12 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain z-alpha PF02295.12 gi|313117049|ref|YP_004038173.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DAO PF01266.19 gi|313117050|ref|YP_004038174.1| - 2.1e-59 201.2 0.0 2.4e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313117050|ref|YP_004038174.1| - 0.00054 20.0 0.6 0.017 15.2 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|313117050|ref|YP_004038174.1| - 0.00076 19.4 0.0 0.16 11.8 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313117050|ref|YP_004038174.1| - 0.0029 16.1 0.0 0.13 10.7 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein ThiF PF00899.16 gi|313117050|ref|YP_004038174.1| - 0.053 13.3 0.2 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|313117050|ref|YP_004038174.1| - 0.14 11.6 0.3 0.23 10.8 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|313117050|ref|YP_004038174.1| - 0.16 11.0 0.2 0.29 10.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.1 gi|313117050|ref|YP_004038174.1| - 0.36 10.5 4.3 0.48 10.1 0.7 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding TPP_enzyme_C PF02775.16 gi|313117051|ref|YP_004038175.1| - 8.1e-33 113.1 0.9 2e-32 111.8 0.6 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|313117051|ref|YP_004038175.1| - 9.9e-33 112.7 0.7 2.4e-32 111.5 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|313117051|ref|YP_004038175.1| - 1.8e-30 105.6 0.1 7.4e-29 100.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|313117051|ref|YP_004038175.1| - 0.2 10.5 0.1 0.45 9.3 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase CO_dh PF02552.11 gi|313117051|ref|YP_004038175.1| - 0.2 11.1 0.0 0.37 10.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Epimerase PF01370.16 gi|313117052|ref|YP_004038176.1| - 2.8e-43 148.0 0.4 3.6e-43 147.6 0.3 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313117052|ref|YP_004038176.1| - 1e-22 80.2 0.0 1.3e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313117052|ref|YP_004038176.1| - 2e-17 63.0 0.7 2.8e-17 62.5 0.5 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|313117052|ref|YP_004038176.1| - 1.5e-12 47.0 0.0 8.2e-11 41.3 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117052|ref|YP_004038176.1| - 6.1e-11 42.6 0.4 8.5e-11 42.1 0.3 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|313117052|ref|YP_004038176.1| - 1.1e-10 40.9 1.1 3.4e-09 35.9 0.8 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|313117052|ref|YP_004038176.1| - 6.6e-10 39.1 1.5 1.3e-09 38.1 1.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313117052|ref|YP_004038176.1| - 5.8e-08 32.5 0.8 1.4e-07 31.3 0.5 1.6 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|313117052|ref|YP_004038176.1| - 4.6e-06 26.0 0.3 8e-06 25.2 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|313117052|ref|YP_004038176.1| - 0.063 12.4 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|313117052|ref|YP_004038176.1| - 0.083 12.5 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HD PF01966.17 gi|313117053|ref|YP_004038177.1| - 2.6e-10 40.3 0.4 4.5e-10 39.5 0.2 1.3 1 0 0 1 1 1 1 HD domain EthD PF07110.6 gi|313117054|ref|YP_004038178.1| - 7.8e-24 84.4 11.1 2e-12 47.8 0.5 3.9 2 2 0 2 2 2 2 EthD domain DUF4543 PF15076.1 gi|313117054|ref|YP_004038178.1| - 0.0031 17.5 0.9 0.24 11.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4543) ABM PF03992.11 gi|313117054|ref|YP_004038178.1| - 0.021 14.8 1.0 7.2 6.7 0.1 3.0 3 0 0 3 3 3 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.19 gi|313117055|ref|YP_004038179.1| - 4.1e-27 95.1 0.1 6.2e-27 94.5 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313117055|ref|YP_004038179.1| - 0.00022 21.7 0.0 0.00039 20.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF433 PF04255.9 gi|313117055|ref|YP_004038179.1| - 0.018 14.4 0.0 0.058 12.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Bac_luciferase PF00296.15 gi|313117056|ref|YP_004038180.1| - 6.7e-61 206.0 0.1 7.6e-61 205.9 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Transket_pyr PF02779.19 gi|313117057|ref|YP_004038181.1| - 6e-48 162.6 0.0 8.2e-48 162.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|313117057|ref|YP_004038181.1| - 1.4e-34 118.7 0.0 2.4e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|313117058|ref|YP_004038182.1| - 1.2e-83 280.2 0.0 1.5e-83 280.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|313117058|ref|YP_004038182.1| - 9.1e-09 34.5 0.2 1.5e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|313117058|ref|YP_004038182.1| - 1e-08 34.5 0.0 1.7e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|313117058|ref|YP_004038182.1| - 3.3e-05 23.5 0.3 0.00019 21.0 0.2 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SNF PF00209.13 gi|313117059|ref|YP_004038183.1| - 3.2e-49 167.7 27.4 4.1e-25 88.2 6.2 2.3 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Aminotran_1_2 PF00155.16 gi|313117060|ref|YP_004038184.1| - 8.1e-59 199.3 0.0 9.1e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313117060|ref|YP_004038184.1| - 2e-14 53.4 0.0 3.1e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|313117060|ref|YP_004038184.1| - 3.2e-08 32.7 0.0 5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313117060|ref|YP_004038184.1| - 7.1e-08 31.9 0.0 1.9e-07 30.5 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313117060|ref|YP_004038184.1| - 6.5e-05 21.3 0.0 9.3e-05 20.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HTH_24 PF13412.1 gi|313117061|ref|YP_004038185.1| - 2.4e-05 23.6 0.0 3.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117061|ref|YP_004038185.1| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|313117061|ref|YP_004038185.1| - 0.0012 18.3 0.4 0.0022 17.4 0.3 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|313117061|ref|YP_004038185.1| - 0.0016 18.7 0.1 0.0023 18.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313117061|ref|YP_004038185.1| - 0.0029 17.1 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313117061|ref|YP_004038185.1| - 0.0044 16.6 0.1 0.0056 16.3 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117061|ref|YP_004038185.1| - 0.0072 16.0 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|313117061|ref|YP_004038185.1| - 0.055 12.9 0.0 0.091 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|313117061|ref|YP_004038185.1| - 0.056 13.2 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|313117061|ref|YP_004038185.1| - 0.093 12.5 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Aldedh PF00171.17 gi|313117062|ref|YP_004038186.1| - 2.3e-137 458.1 0.0 2.6e-137 457.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.13 gi|313117063|ref|YP_004038187.1| - 3.2e-33 114.1 0.2 1.2e-32 112.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117063|ref|YP_004038187.1| - 1.5e-08 34.1 0.2 3.8e-08 32.8 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313117063|ref|YP_004038187.1| - 2.4e-07 30.0 0.2 1.3e-06 27.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117063|ref|YP_004038187.1| - 3e-06 26.9 0.2 3e-06 26.9 0.2 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313117063|ref|YP_004038187.1| - 4.6e-06 26.1 0.4 3e-05 23.5 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|313117063|ref|YP_004038187.1| - 6.6e-06 25.7 0.2 1.4e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117063|ref|YP_004038187.1| - 2.1e-05 24.1 0.0 7.9e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117063|ref|YP_004038187.1| - 4.1e-05 23.2 0.1 8.7e-05 22.1 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117063|ref|YP_004038187.1| - 0.001 18.7 0.0 0.0025 17.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|313117063|ref|YP_004038187.1| - 0.0041 16.6 0.1 0.01 15.3 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313117063|ref|YP_004038187.1| - 0.0052 16.2 0.6 0.029 13.8 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_32 PF13565.1 gi|313117063|ref|YP_004038187.1| - 0.007 17.1 1.0 0.042 14.6 0.2 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Sulfolobus_pRN PF05584.6 gi|313117063|ref|YP_004038187.1| - 0.019 14.9 0.2 0.19 11.7 0.0 2.4 2 1 1 3 3 3 0 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|313117063|ref|YP_004038187.1| - 0.032 13.8 0.0 4.4 7.1 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain HTH_40 PF14493.1 gi|313117063|ref|YP_004038187.1| - 0.062 13.5 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|313117063|ref|YP_004038187.1| - 0.071 13.1 0.0 0.54 10.3 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|313117063|ref|YP_004038187.1| - 0.081 12.5 0.1 0.58 9.7 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Rnk_N PF14760.1 gi|313117063|ref|YP_004038187.1| - 0.53 10.4 4.9 1.9 8.6 0.3 2.7 2 0 0 2 2 2 0 Rnk N-terminus F420_oxidored PF03807.12 gi|313117064|ref|YP_004038188.1| - 1.1e-18 67.4 0.5 1.9e-18 66.6 0.3 1.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|313117064|ref|YP_004038188.1| - 5.7e-05 22.8 0.2 0.00012 21.8 0.1 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|313117064|ref|YP_004038188.1| - 0.00024 20.0 0.0 0.00036 19.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.11 gi|313117064|ref|YP_004038188.1| - 0.00051 19.4 0.1 0.00078 18.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|313117064|ref|YP_004038188.1| - 0.0026 18.0 0.1 0.0052 17.0 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313117064|ref|YP_004038188.1| - 0.016 15.2 1.3 0.016 15.2 0.9 1.8 1 1 0 2 2 2 0 NADH(P)-binding adh_short PF00106.20 gi|313117064|ref|YP_004038188.1| - 0.065 13.1 4.1 0.62 9.9 2.4 2.6 1 1 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.8 gi|313117064|ref|YP_004038188.1| - 0.11 11.7 0.2 0.18 11.0 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family Usp PF00582.21 gi|313117064|ref|YP_004038188.1| - 0.11 12.6 1.7 0.71 10.0 1.2 2.2 1 1 0 1 1 1 0 Universal stress protein family KR PF08659.5 gi|313117064|ref|YP_004038188.1| - 0.15 11.7 0.4 0.47 10.0 0.1 2.0 2 1 0 2 2 2 0 KR domain zf-ISL3 PF14690.1 gi|313117065|ref|YP_004038189.1| - 0.016 15.2 0.9 0.026 14.5 0.2 1.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FCS PF06467.9 gi|313117065|ref|YP_004038189.1| - 0.058 13.0 7.3 0.14 11.7 5.1 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Glyoxalase_2 PF12681.2 gi|313117065|ref|YP_004038189.1| - 0.15 12.7 0.0 0.18 12.4 0.0 1.1 1 0 0 1 1 1 0 Glyoxalase-like domain Arc_trans_TRASH PF08394.5 gi|313117065|ref|YP_004038189.1| - 1.7 8.9 8.4 16 5.7 5.8 2.3 1 1 0 1 1 1 0 Archaeal TRASH domain IMPDH PF00478.20 gi|313117067|ref|YP_004038191.1| - 7.4e-114 380.2 2.7 1.1e-113 379.7 1.9 1.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|313117067|ref|YP_004038191.1| - 7.6e-08 31.8 0.5 8.6e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.13 gi|313117067|ref|YP_004038191.1| - 2.3e-07 30.0 6.4 5.8e-07 28.6 4.4 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|313117067|ref|YP_004038191.1| - 5.3e-06 25.8 16.0 0.0012 18.0 11.1 2.7 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|313117067|ref|YP_004038191.1| - 0.001 18.0 4.1 0.0026 16.7 2.5 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase TMP-TENI PF02581.12 gi|313117067|ref|YP_004038191.1| - 0.0032 16.5 2.2 0.013 14.6 1.2 2.0 1 1 1 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|313117067|ref|YP_004038191.1| - 0.0047 15.9 1.0 0.011 14.7 0.7 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|313117067|ref|YP_004038191.1| - 0.057 12.6 2.7 0.13 11.5 0.4 2.2 2 0 0 2 2 2 0 PcrB family Aldolase PF01081.14 gi|313117067|ref|YP_004038191.1| - 0.076 12.1 3.1 0.099 11.7 0.5 2.0 1 1 1 2 2 2 0 KDPG and KHG aldolase ThiG PF05690.9 gi|313117067|ref|YP_004038191.1| - 0.29 10.1 5.3 0.056 12.5 0.7 1.8 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DAO PF01266.19 gi|313117068|ref|YP_004038192.1| - 4.9e-64 216.4 0.1 5.6e-64 216.2 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313117068|ref|YP_004038192.1| - 3.3e-07 29.1 0.4 0.00084 17.9 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|313117068|ref|YP_004038192.1| - 5.6e-07 29.8 0.5 3.9e-05 23.7 0.3 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313117068|ref|YP_004038192.1| - 7.1e-06 25.9 0.0 2.4e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|313117068|ref|YP_004038192.1| - 1.7e-05 24.6 0.9 0.00096 18.9 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|313117068|ref|YP_004038192.1| - 2.6e-05 24.1 0.4 0.0017 18.2 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313117068|ref|YP_004038192.1| - 0.00018 21.8 0.1 0.21 12.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313117068|ref|YP_004038192.1| - 0.00072 18.7 0.0 0.0037 16.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|313117068|ref|YP_004038192.1| - 0.0011 17.9 0.3 0.043 12.7 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|313117068|ref|YP_004038192.1| - 0.0015 17.5 0.2 0.21 10.4 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Mqo PF06039.10 gi|313117068|ref|YP_004038192.1| - 0.0027 15.9 0.0 0.75 7.8 0.0 2.1 2 0 0 2 2 2 2 Malate:quinone oxidoreductase (Mqo) FAD_binding_2 PF00890.19 gi|313117068|ref|YP_004038192.1| - 0.0035 16.2 0.8 0.01 14.7 0.5 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|313117068|ref|YP_004038192.1| - 0.0041 17.3 0.0 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|313117068|ref|YP_004038192.1| - 0.037 13.0 0.1 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain B12-binding PF02310.14 gi|313117068|ref|YP_004038192.1| - 0.18 11.7 0.8 0.46 10.3 0.1 1.9 2 0 0 2 2 2 0 B12 binding domain Acyl-CoA_dh_1 PF00441.19 gi|313117069|ref|YP_004038193.1| - 7.5e-30 104.0 1.4 1.1e-29 103.4 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313117069|ref|YP_004038193.1| - 1.6e-24 86.6 0.1 3.8e-24 85.4 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313117069|ref|YP_004038193.1| - 1.2e-20 72.7 0.0 3.2e-20 71.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313117069|ref|YP_004038193.1| - 4.4e-12 46.3 1.2 6.3e-12 45.8 0.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AcetylCoA_hyd_C PF13336.1 gi|313117070|ref|YP_004038194.1| - 2.3e-38 131.2 0.0 3.3e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|313117070|ref|YP_004038194.1| - 2.7e-10 40.3 0.0 5.8e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.7 gi|313117070|ref|YP_004038194.1| - 7.1e-05 21.6 0.3 0.00017 20.4 0.2 1.6 1 1 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.18 gi|313117070|ref|YP_004038194.1| - 0.00096 18.3 0.1 0.002 17.3 0.0 1.6 2 0 0 2 2 2 1 Coenzyme A transferase DUF2204 PF09970.4 gi|313117070|ref|YP_004038194.1| - 0.072 12.5 0.1 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) DctM PF06808.7 gi|313117072|ref|YP_004038196.1| - 2e-53 181.4 46.6 2e-53 181.4 32.3 1.9 1 1 1 2 2 2 1 DctM-like transporters DUF3278 PF11683.3 gi|313117072|ref|YP_004038196.1| - 0.045 13.7 4.8 0.43 10.5 0.0 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) NMT1 PF09084.6 gi|313117073|ref|YP_004038197.1| - 0.0016 18.0 0.0 0.0044 16.6 0.0 1.6 1 1 1 2 2 2 1 NMT1/THI5 like UCR_Fe-S_N PF10399.4 gi|313117073|ref|YP_004038197.1| - 5.2 6.3 5.1 0.47 9.6 0.1 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IclR PF01614.13 gi|313117074|ref|YP_004038198.1| - 5.7e-32 110.1 0.0 1.7e-31 108.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117074|ref|YP_004038198.1| - 1.4e-10 40.5 0.1 4.9e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313117074|ref|YP_004038198.1| - 1.3e-07 31.3 0.0 3.3e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117074|ref|YP_004038198.1| - 3.8e-07 29.6 0.1 8.7e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|313117074|ref|YP_004038198.1| - 4.8e-07 29.0 0.0 1.1e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117074|ref|YP_004038198.1| - 4.9e-05 22.9 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117074|ref|YP_004038198.1| - 0.00022 20.8 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313117074|ref|YP_004038198.1| - 0.00028 20.4 0.0 0.00066 19.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313117074|ref|YP_004038198.1| - 0.00074 19.1 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|313117074|ref|YP_004038198.1| - 0.0087 15.9 0.0 0.046 13.6 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117074|ref|YP_004038198.1| - 0.0099 15.5 0.1 0.046 13.3 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_36 PF13730.1 gi|313117074|ref|YP_004038198.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|313117074|ref|YP_004038198.1| - 0.018 15.3 0.0 1 9.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|313117074|ref|YP_004038198.1| - 0.02 14.4 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|313117074|ref|YP_004038198.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|313117074|ref|YP_004038198.1| - 0.077 13.2 0.1 0.5 10.6 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|313117074|ref|YP_004038198.1| - 0.11 12.1 0.0 0.38 10.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|313117074|ref|YP_004038198.1| - 0.13 11.5 0.0 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|313117075|ref|YP_004038199.1| - 2.1e-12 46.6 0.1 4.4e-12 45.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117075|ref|YP_004038199.1| - 0.00028 20.1 0.1 0.00048 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117075|ref|YP_004038199.1| - 0.00029 20.4 0.0 0.00061 19.4 0.0 1.5 1 0 0 1 1 1 1 MarR family CAAD PF14159.1 gi|313117075|ref|YP_004038199.1| - 0.0083 15.7 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Phage_connect_1 PF05135.8 gi|313117075|ref|YP_004038199.1| - 0.05 13.7 0.4 1 9.5 0.1 2.8 3 0 0 3 3 3 0 Phage gp6-like head-tail connector protein HTH_5 PF01022.15 gi|313117075|ref|YP_004038199.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3869 PF12985.2 gi|313117076|ref|YP_004038200.1| - 2 8.8 8.3 0.58 10.6 0.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3869) MarR PF01047.17 gi|313117077|ref|YP_004038201.1| - 7.6e-08 31.9 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|313117077|ref|YP_004038201.1| - 1.2e-07 31.2 0.2 2.5e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117077|ref|YP_004038201.1| - 5.7e-07 29.1 0.4 9.2e-07 28.4 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313117077|ref|YP_004038201.1| - 3e-06 26.7 0.2 5.1e-06 25.9 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313117077|ref|YP_004038201.1| - 6e-06 25.5 0.0 1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117077|ref|YP_004038201.1| - 0.00037 20.2 0.2 0.00061 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313117077|ref|YP_004038201.1| - 0.00047 20.4 0.1 0.0011 19.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|313117077|ref|YP_004038201.1| - 0.00084 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|313117077|ref|YP_004038201.1| - 0.0012 18.6 0.2 0.0022 17.9 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|313117077|ref|YP_004038201.1| - 0.0024 17.2 0.3 0.004 16.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|313117077|ref|YP_004038201.1| - 0.003 17.0 0.5 0.0062 16.0 0.1 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain RepL PF05732.6 gi|313117077|ref|YP_004038201.1| - 0.0095 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) Trp_oprn_chp PF09534.5 gi|313117077|ref|YP_004038201.1| - 0.013 15.0 1.2 0.017 14.7 0.3 1.5 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) COX15-CtaA PF02628.10 gi|313117077|ref|YP_004038201.1| - 0.016 14.1 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein HTH_11 PF08279.7 gi|313117077|ref|YP_004038201.1| - 0.022 14.4 0.2 0.057 13.0 0.1 1.7 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|313117077|ref|YP_004038201.1| - 0.025 14.1 0.1 0.053 13.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Trp_repressor PF01371.14 gi|313117077|ref|YP_004038201.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein Trep_Strep PF09605.5 gi|313117077|ref|YP_004038201.1| - 0.042 13.5 1.5 0.073 12.7 1.0 1.3 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) HTH_Crp_2 PF13545.1 gi|313117077|ref|YP_004038201.1| - 0.046 13.5 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|313117077|ref|YP_004038201.1| - 0.056 13.5 0.3 0.14 12.2 0.2 1.7 1 1 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpc34 PF05158.7 gi|313117077|ref|YP_004038201.1| - 0.081 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit 3HCDH_N PF02737.13 gi|313117079|ref|YP_004038203.1| - 7.8e-62 208.1 0.1 1.3e-61 207.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|313117079|ref|YP_004038203.1| - 1.7e-55 187.8 0.0 2.6e-55 187.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|313117079|ref|YP_004038203.1| - 3.4e-45 152.3 0.3 5.6e-22 77.9 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_C PF13766.1 gi|313117079|ref|YP_004038203.1| - 0.00052 20.1 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|313117079|ref|YP_004038203.1| - 0.01 15.6 0.1 0.026 14.3 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|313117079|ref|YP_004038203.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|313117079|ref|YP_004038203.1| - 0.18 12.2 0.4 0.6 10.5 0.3 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent SCP2 PF02036.12 gi|313117080|ref|YP_004038204.1| - 6.6e-10 39.1 0.0 7.9e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.11 gi|313117080|ref|YP_004038204.1| - 0.71 10.1 5.2 3.5 7.9 0.2 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_zinc_N PF00107.21 gi|313117081|ref|YP_004038205.1| - 9.8e-26 89.8 0.1 1.4e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313117081|ref|YP_004038205.1| - 1.6e-25 88.9 0.1 3.9e-25 87.7 0.1 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|313117081|ref|YP_004038205.1| - 0.022 14.3 0.1 0.04 13.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|313117081|ref|YP_004038205.1| - 0.045 13.7 0.3 0.07 13.1 0.2 1.3 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_11 PF08241.7 gi|313117081|ref|YP_004038205.1| - 0.046 14.1 0.0 0.091 13.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Urocanase PF01175.13 gi|313117081|ref|YP_004038205.1| - 0.091 10.7 0.1 0.12 10.3 0.1 1.1 1 0 0 1 1 1 0 Urocanase ELFV_dehydrog PF00208.16 gi|313117081|ref|YP_004038205.1| - 0.1 12.1 0.2 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|313117081|ref|YP_004038205.1| - 0.11 11.6 0.1 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldedh PF00171.17 gi|313117082|ref|YP_004038206.1| - 1.1e-158 528.4 0.0 1.2e-158 528.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|313117082|ref|YP_004038206.1| - 0.00012 21.4 0.0 0.0042 16.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) MFS_1 PF07690.11 gi|313117083|ref|YP_004038207.1| - 3.7e-38 131.1 61.9 1.2e-30 106.4 26.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|313117083|ref|YP_004038207.1| - 3.7e-08 32.3 4.0 3.7e-08 32.3 2.7 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Alkyl_sulf_dimr PF14863.1 gi|313117084|ref|YP_004038208.1| - 1e-27 97.0 0.1 1.8e-27 96.2 0.1 1.4 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.22 gi|313117084|ref|YP_004038208.1| - 2.5e-21 76.2 0.4 6.1e-21 74.9 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313117084|ref|YP_004038208.1| - 0.00015 21.3 2.3 0.00067 19.2 1.6 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.7 gi|313117085|ref|YP_004038209.1| - 8.7e-16 57.2 0.0 1.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|313117085|ref|YP_004038209.1| - 5.5e-06 25.5 0.3 8.9e-06 24.9 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.1 gi|313117085|ref|YP_004038209.1| - 0.0029 17.0 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.7 gi|313117085|ref|YP_004038209.1| - 0.022 14.2 0.5 0.38 10.2 0.1 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 SgrR_N PF12793.2 gi|313117085|ref|YP_004038209.1| - 0.05 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GtrA PF04138.9 gi|313117086|ref|YP_004038210.1| - 1.4e-20 73.4 11.3 1.6e-20 73.1 7.9 1.1 1 0 0 1 1 1 1 GtrA-like protein PMT_2 PF13231.1 gi|313117087|ref|YP_004038211.1| - 4e-13 49.5 9.8 4e-13 49.5 6.8 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|313117087|ref|YP_004038211.1| - 1e-07 31.5 9.5 2e-07 30.6 6.6 1.4 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_18 PF00704.23 gi|313117088|ref|YP_004038212.1| - 4.2e-97 325.6 10.6 5.7e-97 325.2 7.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|313117088|ref|YP_004038212.1| - 1.1e-18 66.7 5.6 1.1e-18 66.7 3.9 2.1 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.9 gi|313117088|ref|YP_004038212.1| - 6.1e-15 54.5 6.5 6.1e-15 54.5 4.5 2.5 2 0 0 2 2 2 1 Carbohydrate binding domain I-set PF07679.11 gi|313117088|ref|YP_004038212.1| - 0.035 13.9 0.0 0.077 12.8 0.0 1.6 1 0 0 1 1 1 0 Immunoglobulin I-set domain ig PF00047.20 gi|313117088|ref|YP_004038212.1| - 0.045 13.8 0.1 0.92 9.6 0.2 2.7 2 0 0 2 2 2 0 Immunoglobulin domain Glyco_hydro_18 PF00704.23 gi|313117089|ref|YP_004038213.1| - 8.5e-77 258.9 2.2 1.4e-76 258.2 1.5 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|313117089|ref|YP_004038213.1| - 6.8e-23 80.2 7.2 3e-22 78.1 5.0 2.2 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117089|ref|YP_004038213.1| - 6.3e-15 54.4 6.8 2.5e-14 52.5 4.7 2.1 1 0 0 1 1 1 1 Carbohydrate binding domain PKD PF00801.15 gi|313117090|ref|YP_004038214.1| - 9.5e-16 57.3 4.6 2.3e-15 56.1 3.2 1.6 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117090|ref|YP_004038214.1| - 4.2e-13 48.6 5.5 1.2e-12 47.2 3.8 1.8 1 0 0 1 1 1 1 Carbohydrate binding domain Big_3_4 PF13754.1 gi|313117090|ref|YP_004038214.1| - 4.2e-05 23.7 12.2 4.9e-05 23.5 7.0 2.2 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|313117091|ref|YP_004038215.1| - 3.4e-14 52.3 6.8 1.4e-13 50.4 4.7 2.1 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117091|ref|YP_004038215.1| - 2.3e-10 39.8 1.2 8.5e-10 38.0 0.8 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain IclR PF01614.13 gi|313117092|ref|YP_004038216.1| - 2.8e-21 75.5 0.3 3.3e-20 72.0 0.1 2.3 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117092|ref|YP_004038216.1| - 2.3e-12 46.2 0.1 9.3e-12 44.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117092|ref|YP_004038216.1| - 4.7e-07 29.3 0.0 1.1e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117092|ref|YP_004038216.1| - 8.5e-06 25.4 0.0 2.4e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313117092|ref|YP_004038216.1| - 3.3e-05 23.4 0.0 0.00011 21.7 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|313117092|ref|YP_004038216.1| - 0.00033 20.2 0.0 0.00077 19.0 0.0 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117092|ref|YP_004038216.1| - 0.0012 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|313117092|ref|YP_004038216.1| - 0.033 14.3 0.0 0.082 13.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|313117092|ref|YP_004038216.1| - 0.034 13.5 0.0 0.086 12.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|313117092|ref|YP_004038216.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|313117092|ref|YP_004038216.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain His_Phos_1 PF00300.17 gi|313117093|ref|YP_004038217.1| - 4.8e-22 78.7 0.0 5.8e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ComA PF02679.10 gi|313117094|ref|YP_004038218.1| - 3.3e-79 265.3 0.0 3.7e-79 265.1 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) MmgE_PrpD PF03972.9 gi|313117095|ref|YP_004038219.1| - 2.7e-105 352.1 0.4 3e-105 351.9 0.3 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Big_4 PF07532.6 gi|313117095|ref|YP_004038219.1| - 0.028 13.9 0.1 0.1 12.1 0.1 2.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 4) Rib PF08428.5 gi|313117095|ref|YP_004038219.1| - 0.062 13.0 0.7 0.75 9.5 0.1 2.7 3 0 0 3 3 3 0 Rib/alpha-like repeat Peripla_BP_2 PF01497.13 gi|313117096|ref|YP_004038220.1| - 1.1e-15 57.4 0.0 2e-15 56.6 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117096|ref|YP_004038220.1| - 0.00063 19.5 0.4 0.0013 18.5 0.3 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Myco_19_kDa PF05481.7 gi|313117096|ref|YP_004038220.1| - 2 8.2 4.7 3.4 7.4 3.3 1.3 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen CMD PF02627.15 gi|313117097|ref|YP_004038221.1| - 5.5e-12 45.3 0.3 2.5e-10 40.0 0.1 2.1 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family Med15_fungi PF05397.7 gi|313117099|ref|YP_004038223.1| - 0.12 12.3 0.0 0.53 10.2 0.0 2.0 1 1 1 2 2 2 0 Mediator complex subunit 15 DUF2427 PF10348.4 gi|313117100|ref|YP_004038224.1| - 0.079 12.5 0.6 0.095 12.2 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF4044 PF13253.1 gi|313117100|ref|YP_004038224.1| - 1.2 8.3 5.2 2.3 7.4 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) OAD_gamma PF04277.8 gi|313117100|ref|YP_004038224.1| - 4.4 7.7 5.9 7.7 6.9 4.1 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain DDE_Tnp_1 PF01609.16 gi|313117101|ref|YP_004038225.1| - 1.5e-07 31.2 0.1 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain SP2 PF03014.9 gi|313117101|ref|YP_004038225.1| - 0.025 12.4 0.2 0.039 11.8 0.1 1.2 1 0 0 1 1 1 0 Structural protein 2 DUF772 PF05598.6 gi|313117101|ref|YP_004038225.1| - 0.058 13.2 0.1 0.27 11.1 0.0 2.2 1 1 0 1 1 1 0 Transposase domain (DUF772) Na_K-ATPase PF00287.13 gi|313117101|ref|YP_004038225.1| - 0.075 11.7 0.1 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain YibE_F PF07907.6 gi|313117102|ref|YP_004038226.1| - 0.021 13.9 1.4 0.022 13.9 1.0 1.0 1 0 0 1 1 1 0 YibE/F-like protein DUF485 PF04341.7 gi|313117102|ref|YP_004038226.1| - 0.12 12.0 2.4 0.14 11.8 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF485 RDD PF06271.7 gi|313117102|ref|YP_004038226.1| - 0.16 11.8 3.3 0.19 11.6 2.3 1.1 1 0 0 1 1 1 0 RDD family DUF3671 PF12420.3 gi|313117102|ref|YP_004038226.1| - 0.35 10.8 1.6 0.42 10.6 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF2892 PF11127.3 gi|313117102|ref|YP_004038226.1| - 0.47 10.3 2.7 0.59 10.0 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF2614 PF11023.3 gi|313117102|ref|YP_004038226.1| - 1 9.1 4.5 1.1 9.0 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF4083 PF13314.1 gi|313117102|ref|YP_004038226.1| - 7.2 6.5 10.1 0.74 9.6 3.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) DUF3960 PF13142.1 gi|313117104|ref|YP_004038228.1| - 0.021 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) H_kinase_N PF12282.3 gi|313117104|ref|YP_004038228.1| - 0.044 13.3 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Signal transduction histidine kinase UvrD-helicase PF00580.16 gi|313117106|ref|YP_004038230.1| - 2e-47 162.0 2.6 2e-47 162.0 1.8 2.8 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313117106|ref|YP_004038230.1| - 1.2e-16 61.1 15.9 3.4e-09 36.6 0.0 4.9 2 2 1 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|313117106|ref|YP_004038230.1| - 4.7e-10 39.0 0.0 1.4e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|313117106|ref|YP_004038230.1| - 3.6e-07 29.9 0.3 2.3e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|313117106|ref|YP_004038230.1| - 1.5e-06 28.2 0.1 1.9e-05 24.7 0.1 2.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313117106|ref|YP_004038230.1| - 0.021 14.3 0.1 12 5.3 0.0 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Prominin PF05478.6 gi|313117106|ref|YP_004038230.1| - 2.2 5.7 3.7 1 6.7 0.4 2.1 2 0 0 2 2 2 0 Prominin Pex14_N PF04695.8 gi|313117107|ref|YP_004038231.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region PhrC_PhrF PF11131.3 gi|313117107|ref|YP_004038231.1| - 0.13 11.8 0.2 0.24 10.9 0.1 1.4 1 0 0 1 1 1 0 Rap-phr extracellular signalling bPH_2 PF03703.9 gi|313117108|ref|YP_004038232.1| - 3.3e-11 43.0 0.5 1.2e-10 41.2 0.6 1.7 2 0 0 2 2 2 1 Bacterial PH domain PalH PF08733.5 gi|313117108|ref|YP_004038232.1| - 0.014 14.3 0.2 0.018 13.8 0.2 1.1 1 0 0 1 1 1 0 PalH/RIM21 zf-dskA_traR PF01258.12 gi|313117109|ref|YP_004038233.1| - 0.03 14.0 3.5 0.95 9.2 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ISL3 PF14690.1 gi|313117109|ref|YP_004038233.1| - 0.055 13.5 2.5 5.3 7.1 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2116 PF09889.4 gi|313117109|ref|YP_004038233.1| - 0.11 12.2 5.2 0.089 12.6 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF35_N PF12172.3 gi|313117109|ref|YP_004038233.1| - 0.15 11.9 6.6 0.99 9.4 1.0 2.8 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|313117109|ref|YP_004038233.1| - 0.22 11.3 5.4 3.5 7.5 0.7 2.6 2 1 0 2 2 2 0 Double zinc ribbon Helicase_C_2 PF13307.1 gi|313117110|ref|YP_004038234.1| - 4.8e-28 98.2 0.0 1e-27 97.1 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|313117110|ref|YP_004038234.1| - 4.1e-12 45.8 0.0 1.2e-10 41.0 0.0 2.2 2 0 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|313117110|ref|YP_004038234.1| - 0.0035 16.8 0.1 0.075 12.5 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|313117110|ref|YP_004038234.1| - 0.0082 15.9 0.2 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|313117110|ref|YP_004038234.1| - 0.01 15.0 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.24 gi|313117111|ref|YP_004038235.1| - 7.6e-31 107.0 0.0 1.3e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313117111|ref|YP_004038235.1| - 1.8e-06 27.6 0.1 4.2e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|313117111|ref|YP_004038235.1| - 4.9e-05 23.4 0.1 0.0041 17.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|313117111|ref|YP_004038235.1| - 5e-05 23.2 0.0 0.00013 21.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|313117111|ref|YP_004038235.1| - 0.00013 21.6 0.5 0.00054 19.6 0.0 2.3 3 0 0 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|313117111|ref|YP_004038235.1| - 0.00021 21.3 0.0 0.00049 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|313117111|ref|YP_004038235.1| - 0.00026 20.8 0.0 0.00057 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|313117111|ref|YP_004038235.1| - 0.00035 19.6 0.2 0.02 13.8 0.1 2.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.8 gi|313117111|ref|YP_004038235.1| - 0.00045 19.0 0.0 0.0023 16.7 0.0 1.8 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|313117111|ref|YP_004038235.1| - 0.00078 20.2 0.0 0.0025 18.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|313117111|ref|YP_004038235.1| - 0.0022 17.0 0.0 0.0038 16.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|313117111|ref|YP_004038235.1| - 0.0027 18.0 0.4 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|313117111|ref|YP_004038235.1| - 0.0034 16.8 0.1 0.017 14.5 0.0 2.0 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_14 PF13173.1 gi|313117111|ref|YP_004038235.1| - 0.0039 17.1 0.0 0.0073 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|313117111|ref|YP_004038235.1| - 0.0041 16.5 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|313117111|ref|YP_004038235.1| - 0.009 15.5 0.0 0.031 13.7 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain SKI PF01202.17 gi|313117111|ref|YP_004038235.1| - 0.0092 15.8 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase AAA_11 PF13086.1 gi|313117111|ref|YP_004038235.1| - 0.015 14.9 1.3 0.1 12.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|313117111|ref|YP_004038235.1| - 0.017 14.3 0.0 0.034 13.2 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.12 gi|313117111|ref|YP_004038235.1| - 0.019 13.8 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|313117111|ref|YP_004038235.1| - 0.019 14.6 0.0 0.05 13.2 0.0 1.8 1 1 0 1 1 1 0 NACHT domain DUF815 PF05673.8 gi|313117111|ref|YP_004038235.1| - 0.021 13.7 0.0 0.042 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|313117111|ref|YP_004038235.1| - 0.021 14.7 0.0 2.7 7.9 0.0 2.6 1 1 1 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|313117111|ref|YP_004038235.1| - 0.023 14.7 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|313117111|ref|YP_004038235.1| - 0.024 14.9 0.1 0.069 13.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.17 gi|313117111|ref|YP_004038235.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase GvpD PF07088.6 gi|313117111|ref|YP_004038235.1| - 0.076 11.3 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein ADP_ribosyl_GH PF03747.9 gi|313117112|ref|YP_004038236.1| - 1.2e-64 218.8 1.9 1.2e-64 218.8 1.3 1.4 2 0 0 2 2 2 1 ADP-ribosylglycohydrolase Gly-zipper_OmpA PF13436.1 gi|313117112|ref|YP_004038236.1| - 2.5 7.7 6.7 0.11 12.1 0.4 1.8 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain DUF4177 PF13783.1 gi|313117113|ref|YP_004038237.1| - 7.4e-06 25.4 0.1 1.7e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) RNase_H PF00075.19 gi|313117114|ref|YP_004038238.1| - 2.7e-09 37.4 0.0 3.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 RNase H SfsA PF03749.8 gi|313117115|ref|YP_004038239.1| - 5.2e-54 182.9 0.0 7.2e-54 182.5 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Herpes_TK_C PF08465.5 gi|313117116|ref|YP_004038240.1| - 0.02 14.4 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 Thymidine kinase from Herpesvirus C-terminal NTP_transf_2 PF01909.18 gi|313117117|ref|YP_004038241.1| - 2.7e-06 27.6 0.0 4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Oxidored_q1 PF00361.15 gi|313117118|ref|YP_004038242.1| - 0.038 13.2 0.9 0.057 12.6 0.6 1.3 1 1 0 1 1 1 0 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4134 PF13572.1 gi|313117118|ref|YP_004038242.1| - 0.057 13.5 0.1 0.075 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) DUF2631 PF10939.3 gi|313117118|ref|YP_004038242.1| - 0.078 12.8 0.2 9.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) Pox_P21 PF05313.7 gi|313117118|ref|YP_004038242.1| - 0.76 9.0 4.8 0.13 11.5 0.4 1.7 1 1 0 2 2 2 0 Poxvirus P21 membrane protein DUF2516 PF10724.4 gi|313117118|ref|YP_004038242.1| - 7.9 6.5 6.3 25 4.9 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2516) HTH_45 PF14947.1 gi|313117121|ref|YP_004038245.1| - 4.1e-07 29.7 0.2 9.4e-07 28.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|313117121|ref|YP_004038245.1| - 0.005 17.1 0.1 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313117121|ref|YP_004038245.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|313117121|ref|YP_004038245.1| - 0.03 14.2 0.2 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 Trp repressor protein MarR PF01047.17 gi|313117121|ref|YP_004038245.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family TgMIC1 PF11476.3 gi|313117123|ref|YP_004038247.1| - 0.031 13.7 0.1 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 phiKZ_IP PF12699.2 gi|313117124|ref|YP_004038248.1| - 0.054 12.4 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins DUF972 PF06156.8 gi|313117124|ref|YP_004038248.1| - 0.08 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) ICAT PF06384.6 gi|313117124|ref|YP_004038248.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Beta-catenin-interacting protein ICAT Peripla_BP_2 PF01497.13 gi|313117128|ref|YP_004038252.1| - 1.2e-19 70.3 0.0 3e-19 69.1 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117128|ref|YP_004038252.1| - 0.02 14.8 0.1 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF998 PF06197.8 gi|313117131|ref|YP_004038255.1| - 0.0021 17.4 5.1 0.003 16.8 3.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF423 PF04241.10 gi|313117131|ref|YP_004038255.1| - 0.04 13.8 1.3 0.043 13.7 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) DUF872 PF05915.7 gi|313117131|ref|YP_004038255.1| - 0.53 10.1 3.5 0.52 10.1 0.6 1.9 1 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) SdpI PF13630.1 gi|313117131|ref|YP_004038255.1| - 0.79 9.4 12.7 0.17 11.6 4.2 2.1 1 1 1 2 2 2 0 SdpI/YhfL protein family VIT1 PF01988.14 gi|313117131|ref|YP_004038255.1| - 7.2 6.0 10.1 9.5 5.6 7.0 1.2 1 0 0 1 1 1 0 VIT family FA_desaturase PF00487.19 gi|313117132|ref|YP_004038256.1| - 0.045 13.1 0.0 0.068 12.5 0.0 1.3 2 0 0 2 2 2 0 Fatty acid desaturase DUF3040 PF11239.3 gi|313117132|ref|YP_004038256.1| - 0.15 12.1 4.1 0.51 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040)