# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- N6_N4_Mtase PF01555.18 gi|313116829|ref|YP_004037953.1| - 8.8e-38 130.3 0.1 4.1e-28 98.6 0.1 2.7 2 1 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|313116829|ref|YP_004037953.1| - 0.04 13.6 0.0 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 HATPase_c_3 PF13589.6 gi|313116830|ref|YP_004037954.1| - 1.5e-05 24.8 0.0 3.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CARDB PF07705.11 gi|313116831|ref|YP_004037955.1| - 3.9e-10 39.9 17.4 0.0056 16.9 0.3 4.6 4 0 0 4 4 4 4 CARDB DUF4352 PF11611.8 gi|313116831|ref|YP_004037955.1| - 0.0035 17.6 8.1 0.23 11.7 0.1 4.4 4 0 0 4 4 4 1 Domain of unknown function (DUF4352) DUF1833 PF08875.11 gi|313116831|ref|YP_004037955.1| - 0.039 13.5 0.0 0.18 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1833) BsuPI PF12690.7 gi|313116831|ref|YP_004037955.1| - 0.061 13.4 2.4 2.8 8.0 0.0 4.0 4 0 0 4 4 4 0 Intracellular proteinase inhibitor HEAT_2 PF13646.6 gi|313116834|ref|YP_004037958.1| - 7.2e-34 116.0 47.4 3.4e-11 43.4 3.2 8.0 2 2 5 8 8 8 7 HEAT repeats Adaptin_N PF01602.20 gi|313116834|ref|YP_004037958.1| - 1.5e-22 79.9 0.0 1.4e-05 23.9 0.0 5.3 1 1 5 6 6 6 4 Adaptin N terminal region Cnd1 PF12717.7 gi|313116834|ref|YP_004037958.1| - 1.9e-22 80.0 0.3 2.6e-05 24.3 0.1 5.4 4 1 1 5 5 5 4 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.22 gi|313116834|ref|YP_004037958.1| - 1.3e-21 74.8 17.7 0.00037 20.5 0.1 9.7 11 0 0 11 11 10 4 HEAT repeat HEAT_EZ PF13513.6 gi|313116834|ref|YP_004037958.1| - 2.7e-21 75.7 41.0 2.7e-06 27.7 2.3 11.3 7 4 7 14 14 14 7 HEAT-like repeat HEAT_PBS PF03130.16 gi|313116834|ref|YP_004037958.1| - 1.2e-08 34.9 48.8 0.012 16.2 0.7 11.0 13 0 0 13 13 9 4 PBS lyase HEAT-like repeat DNA_alkylation PF08713.11 gi|313116834|ref|YP_004037958.1| - 3.9e-07 30.0 0.7 0.22 11.2 0.0 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme RTP1_C1 PF10363.9 gi|313116834|ref|YP_004037958.1| - 3.3e-05 24.0 0.1 1.7 8.9 0.0 5.0 3 2 1 4 4 4 1 Required for nuclear transport of RNA pol II C-terminus 1 Vac14_Fab1_bd PF12755.7 gi|313116834|ref|YP_004037958.1| - 5.7e-05 23.6 0.0 6.4 7.4 0.0 4.4 3 1 2 5 5 5 2 Vacuolar 14 Fab1-binding region Ecm29 PF13001.7 gi|313116834|ref|YP_004037958.1| - 0.001 17.8 0.0 11 4.5 0.0 4.2 4 1 0 4 4 4 0 Proteasome stabiliser Arm PF00514.23 gi|313116834|ref|YP_004037958.1| - 0.0045 17.0 9.0 0.54 10.4 0.0 6.9 8 0 0 8 8 7 1 Armadillo/beta-catenin-like repeat API5 PF05918.11 gi|313116834|ref|YP_004037958.1| - 0.0074 15.2 4.0 9.2 5.0 0.1 4.1 3 2 1 4 4 4 0 Apoptosis inhibitory protein 5 (API5) DUF3385 PF11865.8 gi|313116834|ref|YP_004037958.1| - 0.0076 16.2 0.1 5 7.0 0.0 4.2 2 2 1 3 3 3 1 Domain of unknown function (DUF3385) dsDNA_bind PF01984.20 gi|313116834|ref|YP_004037958.1| - 0.0088 16.3 1.1 36 4.7 0.0 5.3 5 1 1 6 6 6 0 Double-stranded DNA-binding domain DUF5578 PF17741.1 gi|313116834|ref|YP_004037958.1| - 0.014 14.9 0.0 4.5 6.6 0.0 3.2 2 1 0 3 3 3 0 Family of unknown function (DUF5578) CLASP_N PF12348.8 gi|313116834|ref|YP_004037958.1| - 0.018 14.6 0.1 1.2 8.6 0.0 2.9 3 0 0 3 3 3 0 CLASP N terminal CDC37_N PF03234.14 gi|313116834|ref|YP_004037958.1| - 0.026 15.4 0.0 0.082 13.8 0.0 1.8 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding MMS19_C PF12460.8 gi|313116834|ref|YP_004037958.1| - 0.029 13.5 1.0 3.8 6.5 0.2 3.0 3 1 0 3 3 3 0 RNAPII transcription regulator C-terminal TIP120 PF08623.10 gi|313116834|ref|YP_004037958.1| - 0.045 13.5 0.3 13 5.5 0.0 3.2 3 0 0 3 3 3 0 TATA-binding protein interacting (TIP20) DUF4042 PF13251.6 gi|313116834|ref|YP_004037958.1| - 0.048 13.4 2.6 12 5.5 0.0 3.8 3 1 2 5 5 4 0 Domain of unknown function (DUF4042) Cohesin_HEAT PF12765.7 gi|313116834|ref|YP_004037958.1| - 0.46 10.8 10.4 18 5.7 0.1 5.4 3 1 2 5 5 5 0 HEAT repeat associated with sister chromatid cohesion DUF3560 PF12083.8 gi|313116834|ref|YP_004037958.1| - 0.46 10.6 2.6 64 3.7 0.1 4.2 3 1 2 5 5 4 0 Domain of unknown function (DUF3560) FdhE PF04216.12 gi|313116834|ref|YP_004037958.1| - 5.1 6.9 7.7 1.9 8.3 1.0 3.0 3 0 0 3 3 3 0 Protein involved in formate dehydrogenase formation DUF2262 PF10020.9 gi|313116835|ref|YP_004037959.1| - 0.00031 21.2 0.0 0.00033 21.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2262) Phage_integrase PF00589.22 gi|313116836|ref|YP_004037960.1| - 0.00016 21.6 0.2 0.00016 21.5 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family UvrD_C_2 PF13538.6 gi|313116837|ref|YP_004037961.1| - 1.1e-08 34.7 0.1 2.2e-08 33.8 0.1 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 gi|313116837|ref|YP_004037961.1| - 7.5e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|313116837|ref|YP_004037961.1| - 0.00026 21.3 0.0 0.00091 19.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|313116837|ref|YP_004037961.1| - 0.00043 20.1 0.0 0.16 11.7 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|313116837|ref|YP_004037961.1| - 0.014 14.8 0.0 4 6.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.9 gi|313116837|ref|YP_004037961.1| - 0.12 11.6 0.0 0.27 10.4 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.21 gi|313116837|ref|YP_004037961.1| - 0.2 11.1 0.0 19 4.6 0.0 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF5366 PF17328.2 gi|313116838|ref|YP_004037962.1| - 0.0049 17.0 0.6 0.0054 16.9 0.6 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5366) DDE_Tnp_IS240 PF13610.6 gi|313116841|ref|YP_004037965.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116841|ref|YP_004037965.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116841|ref|YP_004037965.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116841|ref|YP_004037965.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116841|ref|YP_004037965.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family EthD PF07110.11 gi|313116842|ref|YP_004037966.1| - 0.059 14.5 0.0 0.1 13.8 0.0 1.3 1 0 0 1 1 1 0 EthD domain DUF533 PF04391.12 gi|313116843|ref|YP_004037967.1| - 0.049 13.2 0.2 6.3 6.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF533) BTAD PF03704.17 gi|313116844|ref|YP_004037968.1| - 1.8e-07 31.7 36.9 0.021 15.3 0.3 8.9 4 3 6 10 10 10 4 Bacterial transcriptional activator domain TPR_19 PF14559.6 gi|313116844|ref|YP_004037968.1| - 6e-05 23.5 34.0 0.02 15.4 0.1 10.3 11 3 1 12 12 12 4 Tetratricopeptide repeat Phage_TAC_6 PF09550.10 gi|313116844|ref|YP_004037968.1| - 0.061 13.8 20.6 9.5 6.7 0.1 7.8 8 0 0 8 8 8 0 Phage tail assembly chaperone protein, TAC TPR_17 PF13431.6 gi|313116844|ref|YP_004037968.1| - 0.1 13.0 0.1 69 4.2 0.0 4.3 5 0 0 5 5 5 0 Tetratricopeptide repeat Sulfotransfer_3 PF13469.6 gi|313116844|ref|YP_004037968.1| - 0.13 12.6 2.4 20 5.5 0.0 3.8 2 1 1 3 3 3 0 Sulfotransferase family TPR_6 PF13174.6 gi|313116844|ref|YP_004037968.1| - 0.18 12.5 15.0 17 6.3 0.3 8.3 11 0 0 11 11 11 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|313116844|ref|YP_004037968.1| - 1.7 9.7 52.0 19 6.4 3.5 13.3 8 3 6 14 14 14 0 Tetratricopeptide repeat AAA_16 PF13191.6 gi|313116845|ref|YP_004037969.1| - 3.7e-05 24.2 5.1 1.6 9.1 2.3 5.1 3 1 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.6 gi|313116845|ref|YP_004037969.1| - 0.011 15.8 1.3 0.96 9.6 0.2 3.8 3 1 0 3 3 3 0 AAA domain RNase_H PF00075.24 gi|313116846|ref|YP_004037970.1| - 1e-08 35.5 0.0 9.4e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 RNase H RVT_3 PF13456.6 gi|313116846|ref|YP_004037970.1| - 1e-05 25.4 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like Peripla_BP_2 PF01497.18 gi|313116849|ref|YP_004037973.1| - 4.8e-14 52.5 0.0 6.6e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Pyr_redox_2 PF07992.14 gi|313116850|ref|YP_004037974.1| - 3.8e-10 39.5 0.3 2.2e-07 30.4 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313116850|ref|YP_004037974.1| - 1.7e-06 27.5 1.6 0.00069 18.9 0.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|313116850|ref|YP_004037974.1| - 3.1e-06 26.5 1.4 0.00027 20.1 0.4 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|313116850|ref|YP_004037974.1| - 1.7e-05 24.2 0.5 6.4e-05 22.4 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313116850|ref|YP_004037974.1| - 3.9e-05 23.8 0.3 0.00011 22.4 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|313116850|ref|YP_004037974.1| - 8.8e-05 21.4 0.1 0.0011 17.7 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|313116850|ref|YP_004037974.1| - 0.00047 19.4 0.9 0.00047 19.4 0.9 3.3 2 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|313116850|ref|YP_004037974.1| - 0.00051 20.6 3.7 0.0075 16.8 0.1 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313116850|ref|YP_004037974.1| - 0.00067 19.0 0.6 0.0027 17.0 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|313116850|ref|YP_004037974.1| - 0.0015 17.9 1.7 0.0015 17.9 1.7 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313116850|ref|YP_004037974.1| - 0.0023 17.1 0.9 0.0023 17.1 0.9 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|313116850|ref|YP_004037974.1| - 0.0045 16.6 3.7 0.0045 16.6 3.7 3.9 2 1 2 4 4 4 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|313116850|ref|YP_004037974.1| - 0.11 12.4 9.4 0.94 9.5 0.1 3.0 3 1 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|313116850|ref|YP_004037974.1| - 1.2 8.9 2.9 1 9.2 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313116850|ref|YP_004037974.1| - 1.4 8.5 3.7 0.41 10.3 0.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Hydrolase_6 PF13344.6 gi|313116852|ref|YP_004037976.1| - 3e-20 72.2 0.0 2.2e-19 69.4 0.0 2.3 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.28 gi|313116852|ref|YP_004037976.1| - 1.2e-19 70.6 0.1 2.3e-19 69.7 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.6 gi|313116852|ref|YP_004037976.1| - 1.2e-15 57.3 0.1 3.7e-15 55.7 0.1 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|313116852|ref|YP_004037976.1| - 8.9e-06 26.1 1.3 6.6e-05 23.3 1.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313116852|ref|YP_004037976.1| - 3.9e-05 23.8 0.0 0.00014 22.0 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase MFS_1 PF07690.16 gi|313116853|ref|YP_004037977.1| - 7.1e-16 58.1 30.0 7.1e-16 58.1 30.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313116853|ref|YP_004037977.1| - 6.4e-06 25.3 7.9 0.0026 16.7 0.2 2.3 2 1 0 2 2 2 2 MFS_1 like family UPF0444 PF15475.6 gi|313116853|ref|YP_004037977.1| - 2.4 8.5 5.6 3.6 7.9 0.2 3.0 3 0 0 3 3 3 0 Transmembrane protein C12orf23, UPF0444 HAP PF03866.13 gi|313116853|ref|YP_004037977.1| - 2.5 8.1 10.0 0.095 12.7 2.8 2.2 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) PTA_PTB PF01515.19 gi|313116854|ref|YP_004037978.1| - 2.5e-94 316.2 0.0 3.5e-94 315.7 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|313116854|ref|YP_004037978.1| - 3.1e-28 98.8 0.3 6.8e-26 91.2 0.3 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|313116854|ref|YP_004037978.1| - 1.4e-21 76.9 0.2 3.8e-21 75.5 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF2732 PF10809.8 gi|313116854|ref|YP_004037978.1| - 0.03 14.2 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2732) DUF4118 PF13493.6 gi|313116855|ref|YP_004037979.1| - 0.034 13.9 2.7 0.046 13.5 2.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HTH_20 PF12840.7 gi|313116857|ref|YP_004037981.1| - 1.1e-11 44.5 0.0 2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313116857|ref|YP_004037981.1| - 3e-05 23.5 0.0 9.1e-05 21.9 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313116857|ref|YP_004037981.1| - 0.00047 20.0 0.0 0.00081 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313116857|ref|YP_004037981.1| - 0.014 15.2 0.0 0.042 13.8 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF2513 PF10711.9 gi|313116857|ref|YP_004037981.1| - 0.037 14.3 0.0 0.058 13.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|313116857|ref|YP_004037981.1| - 0.046 14.2 0.0 0.12 12.9 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain MdcG PF10620.9 gi|313116858|ref|YP_004037982.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Involucrin2 PF06994.11 gi|313116859|ref|YP_004037983.1| - 0.11 12.6 2.8 0.16 12.1 2.8 1.2 1 0 0 1 1 1 0 Involucrin TrmB PF01978.19 gi|313116861|ref|YP_004037985.1| - 0.00017 21.4 0.0 0.00051 19.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313116861|ref|YP_004037985.1| - 0.0012 18.7 0.0 0.0033 17.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|313116861|ref|YP_004037985.1| - 0.0016 18.9 0.0 0.0038 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|313116861|ref|YP_004037985.1| - 0.01 15.9 0.1 0.033 14.3 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|313116861|ref|YP_004037985.1| - 0.02 14.8 0.0 0.093 12.7 0.0 2.0 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.20 gi|313116861|ref|YP_004037985.1| - 0.025 14.9 0.0 0.052 13.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|313116861|ref|YP_004037985.1| - 0.15 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.16 gi|313116861|ref|YP_004037985.1| - 0.17 12.0 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_IclR PF09339.10 gi|313116861|ref|YP_004037985.1| - 0.19 11.6 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain PQQ_2 PF13360.6 gi|313116864|ref|YP_004037988.1| - 4.1e-29 101.8 18.6 2.6e-14 53.4 4.4 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|313116864|ref|YP_004037988.1| - 6.6e-13 48.7 34.8 0.033 14.7 0.7 8.3 8 2 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|313116864|ref|YP_004037988.1| - 8.3e-07 28.7 3.7 1.7 8.7 0.2 6.6 7 0 0 7 7 7 2 PQQ enzyme repeat Methyltransf_18 PF12847.7 gi|313116864|ref|YP_004037988.1| - 0.19 11.7 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ribonuc_red_sm PF00268.21 gi|313116866|ref|YP_004037990.1| - 8.6e-06 25.4 0.0 1.9e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain ABC_transp_aux PF09822.9 gi|313116868|ref|YP_004037992.1| - 4.8e-21 75.4 0.1 6.5e-06 25.8 0.0 3.2 3 0 0 3 3 3 3 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|313116868|ref|YP_004037992.1| - 1.1e-11 45.0 5.1 0.0016 18.9 0.0 4.7 4 0 0 4 4 4 3 Domain of unknown function (DUF4350) SNase PF00565.17 gi|313116868|ref|YP_004037992.1| - 3.2e-10 40.4 0.0 1.6e-08 34.9 0.0 2.4 2 0 0 2 2 2 1 Staphylococcal nuclease homologue DUF2194 PF09960.9 gi|313116868|ref|YP_004037992.1| - 2.1e-07 29.7 0.0 0.00033 19.1 0.0 3.0 3 0 0 3 3 3 3 Uncharacterised protein conserved in bacteria (DUF2194) ThuA PF06283.11 gi|313116868|ref|YP_004037992.1| - 1.1e-06 29.0 0.4 0.0011 19.2 0.0 3.2 3 0 0 3 3 3 2 Trehalose utilisation UDPG_MGDP_dh_C PF03720.15 gi|313116868|ref|YP_004037992.1| - 0.00069 20.0 0.0 4.3 7.8 0.0 3.6 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDOST_48kD PF03345.14 gi|313116868|ref|YP_004037992.1| - 0.066 12.0 0.1 2 7.2 0.0 2.7 3 1 0 3 3 3 0 Oligosaccharyltransferase 48 kDa subunit beta Iron_permease PF04120.12 gi|313116870|ref|YP_004037994.1| - 0.23 11.2 2.5 0.36 10.6 2.5 1.3 1 0 0 1 1 1 0 Low affinity iron permease YrhK PF14145.6 gi|313116870|ref|YP_004037994.1| - 0.5 10.3 10.2 0.093 12.6 3.5 2.6 2 1 0 2 2 2 0 YrhK-like protein DUF4199 PF13858.6 gi|313116870|ref|YP_004037994.1| - 6.1 7.2 18.0 17 5.8 18.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) HTH_20 PF12840.7 gi|313116871|ref|YP_004037995.1| - 1.4e-05 25.1 0.0 2.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|313116871|ref|YP_004037995.1| - 0.013 15.4 1.4 2.6 8.1 0.2 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HTH_5 PF01022.20 gi|313116871|ref|YP_004037995.1| - 0.021 14.7 0.0 0.068 13.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family zinc_ribbon_10 PF10058.9 gi|313116871|ref|YP_004037995.1| - 0.044 13.5 0.1 3 7.6 0.0 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AMP_N PF05195.16 gi|313116871|ref|YP_004037995.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Aminopeptidase P, N-terminal domain zinc_ribbon_9 PF14369.6 gi|313116871|ref|YP_004037995.1| - 0.19 12.0 4.6 2 8.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|313116871|ref|YP_004037995.1| - 0.24 11.4 3.2 7.1 6.7 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbons DUF35_N PF12172.8 gi|313116871|ref|YP_004037995.1| - 1.8 8.5 6.2 1.3 9.0 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CPBP PF02517.16 gi|313116872|ref|YP_004037996.1| - 4e-18 65.6 5.7 4e-18 65.6 5.7 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF1129 PF06570.11 gi|313116872|ref|YP_004037996.1| - 0.064 12.7 0.5 0.064 12.7 0.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) DUF202 PF02656.15 gi|313116873|ref|YP_004037997.1| - 1 9.9 3.7 3.1 8.3 3.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) BPD_transp_1 PF00528.22 gi|313116874|ref|YP_004037998.1| - 1.3e-21 77.2 17.6 1.3e-21 77.2 17.6 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313116875|ref|YP_004037999.1| - 1.5e-16 60.7 19.4 1.5e-16 60.7 19.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|313116876|ref|YP_004038000.1| - 3.1e-26 92.8 1.6 4.4e-26 92.3 1.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313116876|ref|YP_004038000.1| - 2.7e-20 73.6 3.3 4.3e-20 72.9 3.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|313116877|ref|YP_004038001.1| - 7.3e-33 114.0 0.0 1.1e-32 113.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|313116877|ref|YP_004038001.1| - 2.7e-10 40.3 0.2 7.7e-10 38.8 0.2 1.8 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|313116877|ref|YP_004038001.1| - 9.4e-09 36.0 0.0 3.5e-08 34.1 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|313116877|ref|YP_004038001.1| - 2.6e-08 34.1 0.1 0.0047 16.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|313116877|ref|YP_004038001.1| - 3.6e-06 27.2 0.1 7.4e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|313116877|ref|YP_004038001.1| - 0.00025 20.6 0.0 0.00063 19.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|313116877|ref|YP_004038001.1| - 0.00027 21.5 0.0 0.00047 20.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313116877|ref|YP_004038001.1| - 0.0027 17.6 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|313116877|ref|YP_004038001.1| - 0.0029 18.0 0.0 0.0052 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|313116877|ref|YP_004038001.1| - 0.0044 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain CysA_C_terminal PF17850.1 gi|313116877|ref|YP_004038001.1| - 0.0079 16.7 0.0 0.024 15.2 0.0 1.9 1 0 0 1 1 1 1 CysA C-terminal regulatory domain AAA_15 PF13175.6 gi|313116877|ref|YP_004038001.1| - 0.0091 15.7 0.0 0.018 14.8 0.0 1.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313116877|ref|YP_004038001.1| - 0.013 15.8 0.2 0.026 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313116877|ref|YP_004038001.1| - 0.015 15.7 0.2 0.087 13.2 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|313116877|ref|YP_004038001.1| - 0.029 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|313116877|ref|YP_004038001.1| - 0.044 13.3 0.1 0.77 9.3 0.0 2.6 2 1 1 3 3 3 0 AAA domain Mg_chelatase PF01078.21 gi|313116877|ref|YP_004038001.1| - 0.049 13.0 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|313116877|ref|YP_004038001.1| - 0.088 13.0 0.3 0.15 12.2 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313116877|ref|YP_004038001.1| - 0.1 12.3 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.22 gi|313116878|ref|YP_004038002.1| - 1.7e-20 74.0 0.0 2.7e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116878|ref|YP_004038002.1| - 4.1e-08 33.2 0.1 1.2e-07 31.7 0.1 1.8 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|313116878|ref|YP_004038002.1| - 3.8e-06 26.6 0.1 2e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 Putative oxidoreductase C terminal domain CoA_binding PF02629.19 gi|313116878|ref|YP_004038002.1| - 0.064 14.0 0.0 0.14 12.9 0.0 1.5 2 0 0 2 2 2 0 CoA binding domain 53-BP1_Tudor PF09038.10 gi|313116878|ref|YP_004038002.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.8 2 0 0 2 2 2 0 Tumour suppressor p53-binding protein-1 Tudor F420_oxidored PF03807.17 gi|313116878|ref|YP_004038002.1| - 0.16 12.6 0.3 0.38 11.3 0.1 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.24 gi|313116879|ref|YP_004038003.1| - 1.6e-28 99.6 0.5 2.1e-28 99.2 0.5 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|313116879|ref|YP_004038003.1| - 0.022 14.5 0.4 0.38 10.5 0.1 3.0 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus MFS_1_like PF12832.7 gi|313116880|ref|YP_004038004.1| - 9.3e-39 133.4 17.5 2e-38 132.3 17.5 1.5 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 gi|313116880|ref|YP_004038004.1| - 5.4e-17 61.8 61.5 2.4e-15 56.3 40.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|313116880|ref|YP_004038004.1| - 1.4e-11 43.8 5.1 1.4e-11 43.8 5.1 1.9 2 0 0 2 2 2 1 LacY proton/sugar symporter Nuc_H_symport PF03825.16 gi|313116880|ref|YP_004038004.1| - 8.7e-07 28.3 22.7 1.2e-06 27.8 22.7 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.6 gi|313116880|ref|YP_004038004.1| - 0.027 13.1 30.6 0.033 12.7 2.6 2.8 2 1 0 2 2 2 0 MFS/sugar transport protein Ribonuc_L-PSP PF01042.21 gi|313116881|ref|YP_004038005.1| - 2.8e-40 137.1 0.0 3.1e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GATase1_like PF07090.11 gi|313116882|ref|YP_004038006.1| - 1.2e-71 241.1 0.0 1.3e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 Putative glutamine amidotransferase PGM_PMM_II PF02879.16 gi|313116882|ref|YP_004038006.1| - 0.099 13.3 0.0 0.2 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ADH_N PF08240.12 gi|313116883|ref|YP_004038007.1| - 4.3e-31 107.0 0.3 8e-31 106.2 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313116883|ref|YP_004038007.1| - 5.5e-23 81.4 0.3 8.2e-23 80.8 0.3 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|313116883|ref|YP_004038007.1| - 7.8e-13 48.4 0.4 1.3e-12 47.7 0.4 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|313116883|ref|YP_004038007.1| - 0.00071 20.6 0.1 0.0012 19.9 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ApbA PF02558.16 gi|313116883|ref|YP_004038007.1| - 0.019 14.6 0.1 0.033 13.8 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PIG-L PF02585.17 gi|313116884|ref|YP_004038008.1| - 2.9e-31 108.8 0.7 4.7e-31 108.1 0.7 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|313116884|ref|YP_004038008.1| - 0.003 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Cdc6_C PF09079.11 gi|313116885|ref|YP_004038009.1| - 2.3e-19 69.1 0.3 1.2e-17 63.6 0.1 2.5 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313116885|ref|YP_004038009.1| - 4.1e-13 49.8 0.0 1.6e-12 47.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313116885|ref|YP_004038009.1| - 2.6e-06 27.9 5.9 4.7e-05 23.8 5.9 2.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|313116885|ref|YP_004038009.1| - 0.0011 18.2 0.0 0.0023 17.2 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain TniB PF05621.11 gi|313116885|ref|YP_004038009.1| - 0.0013 18.2 0.0 0.0038 16.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein AAA_5 PF07728.14 gi|313116885|ref|YP_004038009.1| - 0.0014 18.6 0.4 0.024 14.6 0.4 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|313116885|ref|YP_004038009.1| - 0.0015 18.0 0.4 0.51 9.8 0.0 2.4 2 1 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|313116885|ref|YP_004038009.1| - 0.0031 17.6 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313116885|ref|YP_004038009.1| - 0.0033 16.6 0.0 0.0077 15.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|313116885|ref|YP_004038009.1| - 0.0063 16.9 1.3 0.083 13.3 1.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313116885|ref|YP_004038009.1| - 0.0096 15.6 0.1 0.025 14.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain TIP49_C PF17856.1 gi|313116885|ref|YP_004038009.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_24 PF13479.6 gi|313116885|ref|YP_004038009.1| - 0.012 15.3 0.4 0.033 13.9 0.2 1.9 2 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313116885|ref|YP_004038009.1| - 0.037 13.8 2.2 5.6 6.7 0.2 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|313116885|ref|YP_004038009.1| - 0.083 11.7 0.6 5.1 5.7 0.3 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|313116885|ref|YP_004038009.1| - 0.085 12.8 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|313116885|ref|YP_004038009.1| - 0.14 12.5 0.0 0.44 11.0 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_7 PF12775.7 gi|313116885|ref|YP_004038009.1| - 0.15 11.6 0.1 0.48 9.9 0.1 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region GFO_IDH_MocA PF01408.22 gi|313116886|ref|YP_004038010.1| - 5e-24 85.4 0.2 7.6e-24 84.8 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116886|ref|YP_004038010.1| - 2.7e-11 43.5 0.0 5.7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|313116886|ref|YP_004038010.1| - 0.00045 20.6 0.1 0.001 19.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|313116886|ref|YP_004038010.1| - 0.0037 17.4 0.0 0.0066 16.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|313116886|ref|YP_004038010.1| - 0.0087 16.7 0.1 0.016 15.9 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|313116886|ref|YP_004038010.1| - 0.022 15.3 0.0 0.069 13.7 0.0 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|313116887|ref|YP_004038011.1| - 3e-17 63.6 0.5 5.7e-17 62.6 0.2 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116887|ref|YP_004038011.1| - 3.4e-08 33.5 0.1 8.3e-08 32.3 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Oxidoreduct_C PF16490.5 gi|313116887|ref|YP_004038011.1| - 0.013 15.2 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain Sacchrp_dh_NADP PF03435.18 gi|313116887|ref|YP_004038011.1| - 0.029 14.6 0.7 1.8 8.9 0.5 3.0 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|313116888|ref|YP_004038012.1| - 3e-13 50.6 0.0 5.7e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116888|ref|YP_004038012.1| - 9.1e-05 22.4 0.0 0.00017 21.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.22 gi|313116889|ref|YP_004038013.1| - 1.5e-06 29.0 0.0 2.4e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116889|ref|YP_004038013.1| - 0.00022 21.2 0.0 0.00045 20.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Aminotran_5 PF00266.19 gi|313116890|ref|YP_004038014.1| - 7e-10 38.4 0.0 1.2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|313116890|ref|YP_004038014.1| - 1.3e-09 37.6 0.6 4.8e-08 32.4 0.3 3.2 2 2 0 2 2 2 1 L-seryl-tRNA selenium transferase DegT_DnrJ_EryC1 PF01041.17 gi|313116890|ref|YP_004038014.1| - 1.4e-07 31.2 3.4 9.1e-07 28.5 2.9 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|313116890|ref|YP_004038014.1| - 1.7e-05 23.5 0.1 0.00065 18.3 0.0 2.1 2 0 0 2 2 2 2 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|313116890|ref|YP_004038014.1| - 0.0022 17.3 0.6 0.0042 16.4 0.1 2.0 2 1 0 2 2 2 1 Beta-eliminating lyase NAD_binding_3 PF03447.16 gi|313116890|ref|YP_004038014.1| - 0.034 14.8 0.1 0.18 12.5 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|313116891|ref|YP_004038015.1| - 2.2e-23 82.8 0.3 1.7e-21 76.7 0.1 2.1 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313116891|ref|YP_004038015.1| - 0.0026 16.6 0.0 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) DUF2334 PF10096.9 gi|313116891|ref|YP_004038015.1| - 0.042 13.5 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) NYN PF01936.18 gi|313116891|ref|YP_004038015.1| - 0.048 14.1 0.0 3.5 8.1 0.0 2.6 2 1 0 2 2 2 0 NYN domain GlcNAc_2-epim PF07221.11 gi|313116892|ref|YP_004038016.1| - 2.5e-95 319.7 8.3 3.2e-95 319.3 8.3 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|313116892|ref|YP_004038016.1| - 5.3e-06 26.2 4.5 0.00028 20.5 3.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|313116892|ref|YP_004038016.1| - 0.0008 19.0 0.2 0.81 9.2 0.0 2.6 2 0 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_127 PF07944.12 gi|313116892|ref|YP_004038016.1| - 0.006 15.1 0.6 0.47 8.9 0.1 2.2 1 1 1 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_47 PF01532.20 gi|313116892|ref|YP_004038016.1| - 0.11 11.4 0.0 9.5 5.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 47 DUF35_N PF12172.8 gi|313116893|ref|YP_004038017.1| - 8.7e-07 28.7 3.0 1.6e-06 27.8 3.0 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|313116893|ref|YP_004038017.1| - 4.6e-05 23.3 2.9 0.00012 22.0 1.7 2.4 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated ACP_syn_III_C PF08541.10 gi|313116893|ref|YP_004038017.1| - 0.0014 18.8 0.2 0.004 17.3 0.2 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|313116893|ref|YP_004038017.1| - 0.0027 17.1 0.1 0.0055 16.1 0.1 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_N PF00108.23 gi|313116894|ref|YP_004038018.1| - 3.4e-27 95.4 0.3 1.8e-26 93.1 0.3 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|313116894|ref|YP_004038018.1| - 1.3e-09 37.7 0.2 5e-09 35.9 0.0 2.1 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|313116894|ref|YP_004038018.1| - 9.4e-07 28.7 2.3 1.9e-06 27.7 1.0 2.0 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|313116894|ref|YP_004038018.1| - 0.00019 21.2 0.9 0.059 13.2 0.1 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peripla_BP_2 PF01497.18 gi|313116895|ref|YP_004038019.1| - 5.8e-18 65.3 0.2 8.2e-18 64.8 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313116895|ref|YP_004038019.1| - 0.00031 20.5 3.3 0.00053 19.7 3.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PhoLip_ATPase_N PF16209.5 gi|313116895|ref|YP_004038019.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Phospholipid-translocating ATPase N-terminal Glyco_hydro_3 PF00933.21 gi|313116897|ref|YP_004038021.1| - 1.3e-73 248.1 0.0 1.8e-73 247.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|313116897|ref|YP_004038021.1| - 2e-50 171.6 0.0 3e-50 171.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|313116897|ref|YP_004038021.1| - 4.3e-11 42.7 1.2 6.2e-11 42.3 0.2 1.8 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF11 PF01345.18 gi|313116897|ref|YP_004038021.1| - 3e-06 27.4 1.9 8.3e-06 26.0 1.9 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|313116897|ref|YP_004038021.1| - 0.016 15.5 0.1 0.03 14.6 0.1 1.4 1 0 0 1 1 1 0 CARDB TrkA_C PF02080.21 gi|313116898|ref|YP_004038022.1| - 1.2e-11 44.2 0.3 2.2e-11 43.4 0.3 1.4 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|313116898|ref|YP_004038022.1| - 8.8e-09 34.8 0.0 1.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313116898|ref|YP_004038022.1| - 1.1e-08 34.8 0.1 2.7e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313116898|ref|YP_004038022.1| - 0.00017 21.4 0.0 0.0004 20.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|313116898|ref|YP_004038022.1| - 0.005 16.7 0.1 0.021 14.7 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|313116898|ref|YP_004038022.1| - 0.0055 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|313116898|ref|YP_004038022.1| - 0.011 15.8 0.0 0.031 14.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|313116898|ref|YP_004038022.1| - 0.033 13.8 0.0 0.091 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.6 gi|313116898|ref|YP_004038022.1| - 0.041 14.0 0.0 0.092 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|313116898|ref|YP_004038022.1| - 0.071 12.8 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|313116898|ref|YP_004038022.1| - 0.15 12.0 0.1 0.49 10.4 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_Tc3_2 PF01498.18 gi|313116898|ref|YP_004038022.1| - 0.17 12.1 0.0 0.4 11.0 0.0 1.6 1 0 0 1 1 1 0 Transposase TrkA_N PF02254.18 gi|313116899|ref|YP_004038023.1| - 8.4e-26 90.5 1.1 1.5e-25 89.7 1.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|313116899|ref|YP_004038023.1| - 2.1e-12 46.7 0.7 8.6e-12 44.7 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain ADH_zinc_N PF00107.26 gi|313116899|ref|YP_004038023.1| - 8e-05 22.6 0.1 0.0018 18.3 0.3 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase XdhC_C PF13478.6 gi|313116899|ref|YP_004038023.1| - 0.00044 20.7 0.1 0.00065 20.2 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Sacchrp_dh_NADP PF03435.18 gi|313116899|ref|YP_004038023.1| - 0.0021 18.3 0.1 0.0031 17.8 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|313116899|ref|YP_004038023.1| - 0.0024 17.5 0.7 0.0036 16.9 0.6 1.4 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|313116899|ref|YP_004038023.1| - 0.0035 17.3 2.0 0.012 15.5 0.8 2.1 2 1 0 2 2 2 1 NAD(P)H-binding Peripla_BP_3 PF13377.6 gi|313116899|ref|YP_004038023.1| - 0.0052 17.1 1.3 0.013 15.8 0.1 2.0 2 0 0 2 2 2 1 Periplasmic binding protein-like domain 3HCDH_N PF02737.18 gi|313116899|ref|YP_004038023.1| - 0.0054 16.6 0.3 0.0083 16.0 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|313116899|ref|YP_004038023.1| - 0.0063 16.9 0.3 0.014 15.9 0.3 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|313116899|ref|YP_004038023.1| - 0.0096 16.5 1.0 0.033 14.8 0.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|313116899|ref|YP_004038023.1| - 0.012 14.9 0.8 0.018 14.3 0.8 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|313116899|ref|YP_004038023.1| - 0.02 14.3 0.2 0.031 13.7 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|313116899|ref|YP_004038023.1| - 0.029 14.6 0.1 0.071 13.3 0.1 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PglD_N PF17836.1 gi|313116899|ref|YP_004038023.1| - 0.029 15.0 0.1 0.051 14.2 0.1 1.5 1 0 0 1 1 1 0 PglD N-terminal domain ATPgrasp_N PF18130.1 gi|313116899|ref|YP_004038023.1| - 0.053 14.1 1.4 0.096 13.2 1.4 1.5 1 0 0 1 1 1 0 ATP-grasp N-terminal domain NmrA PF05368.13 gi|313116899|ref|YP_004038023.1| - 0.13 11.8 0.2 0.2 11.2 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family HGTP_anticodon2 PF12745.7 gi|313116900|ref|YP_004038024.1| - 0.15 11.6 1.7 0.18 11.3 1.7 1.1 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs CitMHS PF03600.16 gi|313116901|ref|YP_004038025.1| - 8.5e-65 218.9 1.3 1e-64 218.6 0.1 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|313116901|ref|YP_004038025.1| - 3.6e-21 75.8 37.7 3.2e-14 52.9 17.8 3.2 3 0 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|313116901|ref|YP_004038025.1| - 6.1e-19 67.6 2.5 1e-11 44.5 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF883 PF05957.13 gi|313116903|ref|YP_004038027.1| - 0.1 13.2 1.5 0.59 10.8 0.0 2.2 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) CBS PF00571.28 gi|313116905|ref|YP_004038029.1| - 1.3e-24 86.4 0.7 4.7e-14 52.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|313116905|ref|YP_004038029.1| - 4.7e-13 49.0 9.3 9.1e-09 35.0 0.2 3.3 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|313116905|ref|YP_004038029.1| - 5.4e-06 26.2 2.7 5.4e-06 26.2 2.7 2.3 2 1 0 3 3 3 1 Peptidase M50B-like SpoVT_C PF15714.5 gi|313116905|ref|YP_004038029.1| - 0.035 14.1 0.1 0.074 13.1 0.1 1.5 1 1 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor Peptidase_M64 PF09471.10 gi|313116905|ref|YP_004038029.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 IgA Peptidase M64 CBS PF00571.28 gi|313116908|ref|YP_004038032.1| - 9.8e-10 38.7 0.9 2.5e-09 37.5 0.9 1.7 1 0 0 1 1 1 1 CBS domain 17kDa_Anti_2 PF16998.5 gi|313116908|ref|YP_004038032.1| - 0.098 12.6 1.0 2.4 8.1 0.1 2.4 1 1 1 2 2 2 0 17 kDa outer membrane surface antigen DUF4267 PF14087.6 gi|313116909|ref|YP_004038033.1| - 8.4 6.5 9.0 1.2 9.2 0.6 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4267) DUF2178 PF09946.9 gi|313116910|ref|YP_004038034.1| - 2e-07 31.1 0.3 3.2e-07 30.5 0.3 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) HTH_3 PF01381.22 gi|313116911|ref|YP_004038035.1| - 1e-15 57.5 0.0 1.1e-15 57.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|313116911|ref|YP_004038035.1| - 1.7e-09 37.9 0.2 1.8e-09 37.8 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313116911|ref|YP_004038035.1| - 4e-09 36.4 0.0 4e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|313116911|ref|YP_004038035.1| - 4.4e-06 27.0 0.0 4.6e-06 27.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|313116911|ref|YP_004038035.1| - 0.0009 19.1 0.3 0.0012 18.6 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313116911|ref|YP_004038035.1| - 0.026 14.5 0.1 0.035 14.1 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|313116911|ref|YP_004038035.1| - 0.031 14.1 0.1 0.047 13.6 0.1 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|313116911|ref|YP_004038035.1| - 0.065 12.8 0.1 0.089 12.3 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|313116911|ref|YP_004038035.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|313116911|ref|YP_004038035.1| - 0.07 13.1 0.0 0.07 13.1 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|313116911|ref|YP_004038035.1| - 0.12 12.5 0.0 0.35 11.0 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Phage_CI_repr PF07022.13 gi|313116911|ref|YP_004038035.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_20 PF12840.7 gi|313116912|ref|YP_004038036.1| - 3.3e-05 23.8 0.0 6.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Secretin_N_2 PF07655.13 gi|313116912|ref|YP_004038036.1| - 2 9.0 5.8 2.4 8.8 0.8 2.2 2 0 0 2 2 2 0 Secretin N-terminal domain MarR_2 PF12802.7 gi|313116915|ref|YP_004038039.1| - 1.4e-15 56.9 1.7 5.1e-09 35.9 0.9 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|313116915|ref|YP_004038039.1| - 1.3e-09 37.8 0.2 0.00047 20.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313116915|ref|YP_004038039.1| - 5.8e-09 35.4 0.1 0.0032 17.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313116915|ref|YP_004038039.1| - 1.7e-08 34.2 0.0 0.00098 19.0 0.1 2.5 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.20 gi|313116915|ref|YP_004038039.1| - 2e-08 34.5 0.0 0.0072 16.6 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.6 gi|313116915|ref|YP_004038039.1| - 2.7e-07 31.0 0.9 2.4e-06 28.0 0.4 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313116915|ref|YP_004038039.1| - 4e-07 29.7 0.2 0.018 14.9 0.1 2.8 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313116915|ref|YP_004038039.1| - 4.2e-07 29.9 0.5 0.031 14.3 0.3 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|313116915|ref|YP_004038039.1| - 7.7e-07 28.7 0.1 0.014 15.2 0.0 2.8 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|313116915|ref|YP_004038039.1| - 1.2e-06 28.4 0.0 0.0012 18.8 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|313116915|ref|YP_004038039.1| - 7.6e-06 25.9 0.3 0.15 12.1 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.6 gi|313116915|ref|YP_004038039.1| - 7.7e-05 22.7 0.1 0.082 13.1 0.0 2.9 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313116915|ref|YP_004038039.1| - 0.00012 21.8 0.0 0.31 10.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313116915|ref|YP_004038039.1| - 0.00036 20.1 0.1 1.1 9.0 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family DUF746 PF05344.11 gi|313116915|ref|YP_004038039.1| - 0.0013 18.5 0.0 0.0037 17.1 0.0 1.8 2 0 0 2 2 1 1 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|313116915|ref|YP_004038039.1| - 0.0026 18.1 0.0 2.4 8.5 0.0 2.4 1 1 0 2 2 2 2 Penicillinase repressor Crp PF00325.20 gi|313116915|ref|YP_004038039.1| - 0.0048 16.5 0.7 0.026 14.2 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_38 PF13936.6 gi|313116915|ref|YP_004038039.1| - 0.037 13.8 1.4 2.9 7.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|313116915|ref|YP_004038039.1| - 0.038 14.5 0.1 0.097 13.2 0.0 1.7 1 1 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_11 PF08279.12 gi|313116915|ref|YP_004038039.1| - 0.077 13.0 0.1 5.3 7.1 0.0 2.5 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.16 gi|313116915|ref|YP_004038039.1| - 0.1 12.2 0.1 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 RPA_C PF08784.11 gi|313116915|ref|YP_004038039.1| - 0.11 13.2 0.0 0.24 12.1 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_41 PF14502.6 gi|313116915|ref|YP_004038039.1| - 0.14 11.8 0.0 0.45 10.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|313116916|ref|YP_004038040.1| - 0.0097 15.9 0.2 0.025 14.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2204 PF09970.9 gi|313116916|ref|YP_004038040.1| - 0.029 14.0 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) IF2_N PF04760.15 gi|313116916|ref|YP_004038040.1| - 0.046 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_AsnC-type PF13404.6 gi|313116916|ref|YP_004038040.1| - 0.054 13.3 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r3 PF04539.16 gi|313116916|ref|YP_004038040.1| - 0.056 13.5 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 DUF4423 PF14394.6 gi|313116916|ref|YP_004038040.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DDRGK PF09756.9 gi|313116916|ref|YP_004038040.1| - 0.16 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Tnp_ISL3 PF13542.6 gi|313116916|ref|YP_004038040.1| - 0.19 11.2 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DprA_WH PF17782.1 gi|313116916|ref|YP_004038040.1| - 0.79 9.9 4.8 0.16 12.1 0.5 2.1 2 0 0 2 2 2 0 DprA winged helix domain SWIM PF04434.17 gi|313116917|ref|YP_004038041.1| - 0.012 15.3 0.7 0.032 13.9 0.7 1.8 1 1 0 1 1 1 0 SWIM zinc finger DUF1326 PF07040.11 gi|313116918|ref|YP_004038042.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1326) ABC2_membrane_2 PF12679.7 gi|313116919|ref|YP_004038043.1| - 3.7e-10 39.6 14.9 1.5e-09 37.6 14.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|313116919|ref|YP_004038043.1| - 3.2 5.9 11.1 3.6 5.8 11.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|313116920|ref|YP_004038044.1| - 4.9e-26 91.9 0.0 1.4e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|313116920|ref|YP_004038044.1| - 1.4e-15 58.0 0.0 2.3e-09 37.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313116920|ref|YP_004038044.1| - 8.2e-06 25.4 0.0 0.1 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|313116920|ref|YP_004038044.1| - 3.6e-05 24.4 0.0 6.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|313116920|ref|YP_004038044.1| - 3.6e-05 23.6 1.8 0.00011 21.9 0.7 2.2 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|313116920|ref|YP_004038044.1| - 6.1e-05 22.7 0.1 0.00011 21.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313116920|ref|YP_004038044.1| - 0.0035 17.9 0.0 0.0053 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|313116920|ref|YP_004038044.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313116920|ref|YP_004038044.1| - 0.019 15.0 0.2 1.1 9.3 0.0 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313116920|ref|YP_004038044.1| - 0.069 13.1 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|313116920|ref|YP_004038044.1| - 0.16 12.2 0.6 2.9 8.1 0.3 2.5 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|313116920|ref|YP_004038044.1| - 0.2 11.4 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane_2 PF12679.7 gi|313116921|ref|YP_004038045.1| - 8.9e-17 61.3 14.7 2.9e-16 59.6 14.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313116921|ref|YP_004038045.1| - 7.8e-07 29.2 0.6 1.5e-06 28.3 0.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313116921|ref|YP_004038045.1| - 0.00014 21.1 1.0 0.00018 20.7 1.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313116921|ref|YP_004038045.1| - 0.0069 16.0 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313116921|ref|YP_004038045.1| - 0.35 10.2 8.7 0.58 9.5 8.7 1.5 1 1 0 1 1 1 0 ABC-2 type transporter TrmB PF01978.19 gi|313116923|ref|YP_004038047.1| - 1.4e-09 37.7 0.3 3.7e-09 36.4 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|313116923|ref|YP_004038047.1| - 6.9e-05 22.8 0.1 0.00021 21.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313116923|ref|YP_004038047.1| - 0.00016 21.2 0.0 0.0015 18.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313116923|ref|YP_004038047.1| - 0.0011 18.8 0.3 0.0039 17.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|313116923|ref|YP_004038047.1| - 0.0019 18.0 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|313116923|ref|YP_004038047.1| - 0.0083 15.9 0.2 0.052 13.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|313116923|ref|YP_004038047.1| - 0.019 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain F-112 PF09645.10 gi|313116923|ref|YP_004038047.1| - 0.052 13.7 0.0 11 6.1 0.0 2.2 2 0 0 2 2 2 0 F-112 protein Penicillinase_R PF03965.16 gi|313116923|ref|YP_004038047.1| - 0.052 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|313116923|ref|YP_004038047.1| - 0.061 13.8 0.2 0.2 12.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.19 gi|313116925|ref|YP_004038049.1| - 0.0038 17.4 0.1 0.0051 17.0 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Replic_Relax PF13814.6 gi|313116925|ref|YP_004038049.1| - 0.0059 16.7 0.0 0.0082 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_WhiA PF02650.14 gi|313116925|ref|YP_004038049.1| - 0.017 15.4 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_Tnp_Tc3_2 PF01498.18 gi|313116925|ref|YP_004038049.1| - 0.018 15.3 0.1 0.033 14.4 0.1 1.4 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|313116925|ref|YP_004038049.1| - 0.024 14.6 0.1 0.046 13.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_32 PF13565.6 gi|313116925|ref|YP_004038049.1| - 0.034 14.8 0.3 0.09 13.4 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain TatD_DNase PF01026.21 gi|313116925|ref|YP_004038049.1| - 0.15 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase DUF4870 PF09685.10 gi|313116926|ref|YP_004038050.1| - 1.3e-07 31.7 3.9 1.3e-07 31.7 3.9 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4870) TetR_C_29 PF17938.1 gi|313116926|ref|YP_004038050.1| - 0.065 13.3 0.1 16 5.6 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF4293 PF14126.6 gi|313116926|ref|YP_004038050.1| - 0.66 10.2 4.9 4.5 7.5 4.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) E1-E2_ATPase PF00122.20 gi|313116928|ref|YP_004038052.1| - 3.2e-49 166.9 1.1 6.9e-49 165.8 1.1 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|313116928|ref|YP_004038052.1| - 1.1e-48 166.3 5.1 2.8e-48 165.0 5.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|313116928|ref|YP_004038052.1| - 4.1e-29 100.8 1.1 1.4e-13 51.1 0.0 3.3 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|313116928|ref|YP_004038052.1| - 7.7e-07 29.1 2.4 0.0016 18.2 0.6 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|313116928|ref|YP_004038052.1| - 0.0007 19.7 0.6 0.012 15.8 0.0 3.2 4 1 1 5 5 5 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313116928|ref|YP_004038052.1| - 0.0011 19.4 0.5 0.0033 17.8 0.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Thioredoxin_3 PF13192.6 gi|313116928|ref|YP_004038052.1| - 0.095 12.8 0.4 30 4.8 0.0 3.2 3 0 0 3 3 3 0 Thioredoxin domain Yippee-Mis18 PF03226.14 gi|313116928|ref|YP_004038052.1| - 0.13 12.5 0.1 0.33 11.2 0.1 1.6 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Fer2_BFD PF04324.15 gi|313116928|ref|YP_004038052.1| - 0.26 11.7 1.9 2 8.8 0.1 2.9 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain 4_1_CTD PF05902.13 gi|313116928|ref|YP_004038052.1| - 0.69 10.0 3.1 0.49 10.5 0.6 1.9 2 0 0 2 2 2 0 4.1 protein C-terminal domain (CTD) Amidohydro_1 PF01979.20 gi|313116929|ref|YP_004038053.1| - 1.3e-17 64.2 0.1 1.2e-15 57.7 0.1 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313116929|ref|YP_004038053.1| - 6.8e-17 62.1 8.7 4e-12 46.4 0.1 3.0 2 1 0 2 2 2 2 Amidohydrolase family MucB_RseB PF03888.14 gi|313116930|ref|YP_004038054.1| - 5.7e-05 22.7 0.1 0.00011 21.9 0.1 1.4 1 1 0 1 1 1 1 MucB/RseB N-terminal domain LolA_like PF17131.4 gi|313116930|ref|YP_004038054.1| - 0.00022 21.1 0.6 0.00041 20.1 0.0 1.7 2 0 0 2 2 2 1 Outer membrane lipoprotein-sorting protein Peptidase_S49 PF01343.18 gi|313116931|ref|YP_004038055.1| - 4.6e-21 75.4 1.0 4.3e-12 46.2 1.0 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|313116931|ref|YP_004038055.1| - 1.6e-08 34.6 0.2 5.6e-08 32.9 0.2 2.0 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|313116931|ref|YP_004038055.1| - 2.5e-05 23.4 0.1 3.6e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|313116931|ref|YP_004038055.1| - 0.00024 20.5 0.4 0.12 11.7 0.4 2.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Ligase_CoA PF00549.19 gi|313116931|ref|YP_004038055.1| - 0.0041 16.9 0.1 0.014 15.2 0.1 1.9 2 0 0 2 2 2 1 CoA-ligase OKR_DC_1_N PF03709.15 gi|313116931|ref|YP_004038055.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ABC_transp_aux PF09822.9 gi|313116932|ref|YP_004038056.1| - 5.6e-05 22.7 0.0 7.4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|313116932|ref|YP_004038056.1| - 0.0011 19.3 0.2 0.011 16.1 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) HisKA_7TM PF16927.5 gi|313116933|ref|YP_004038057.1| - 1.4e-53 182.2 15.5 1.7e-53 181.9 15.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|313116933|ref|YP_004038057.1| - 2e-15 57.3 0.0 3.8e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313116933|ref|YP_004038057.1| - 6.7e-09 36.0 0.6 5.2e-08 33.1 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|313116933|ref|YP_004038057.1| - 4.6e-08 33.2 0.5 4.6e-07 30.1 0.1 2.7 2 2 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|313116933|ref|YP_004038057.1| - 1.6e-06 28.1 0.0 3.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313116933|ref|YP_004038057.1| - 1.3e-05 25.1 0.4 7.9e-05 22.6 0.1 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|313116933|ref|YP_004038057.1| - 0.00018 21.5 0.1 0.0012 18.8 0.1 2.4 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.7 gi|313116933|ref|YP_004038057.1| - 0.0024 18.0 0.9 0.75 10.0 0.0 3.1 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.6 gi|313116933|ref|YP_004038057.1| - 0.009 15.9 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 1 GHKL domain UbiA PF01040.18 gi|313116934|ref|YP_004038058.1| - 1.9e-16 60.1 22.8 1.9e-16 60.1 22.8 1.9 1 1 1 2 2 2 2 UbiA prenyltransferase family HTH_10 PF04967.12 gi|313116935|ref|YP_004038059.1| - 1.7e-18 66.1 0.1 2.8e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.12 gi|313116935|ref|YP_004038059.1| - 0.00027 20.8 0.1 0.0059 16.5 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|313116935|ref|YP_004038059.1| - 0.0013 18.2 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|313116935|ref|YP_004038059.1| - 0.0066 15.9 0.1 0.013 15.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313116935|ref|YP_004038059.1| - 0.008 16.0 0.1 0.02 14.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|313116935|ref|YP_004038059.1| - 0.026 14.1 0.1 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|313116935|ref|YP_004038059.1| - 0.061 13.0 0.3 0.17 11.5 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|313116935|ref|YP_004038059.1| - 0.063 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313116935|ref|YP_004038059.1| - 0.065 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|313116935|ref|YP_004038059.1| - 0.1 12.4 0.1 0.48 10.2 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|313116935|ref|YP_004038059.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|313116935|ref|YP_004038059.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease p450 PF00067.22 gi|313116936|ref|YP_004038060.1| - 5.3e-96 322.2 0.0 5.9e-96 322.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Hol_Tox PF16935.5 gi|313116937|ref|YP_004038061.1| - 0.21 11.7 1.6 1.4 9.0 0.9 2.1 2 0 0 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) Peptidase_S8 PF00082.22 gi|313116938|ref|YP_004038062.1| - 3.5e-49 167.7 9.1 3.5e-49 167.7 9.1 1.5 2 0 0 2 2 2 1 Subtilase family Pur_ac_phosph_N PF16656.5 gi|313116938|ref|YP_004038062.1| - 0.017 15.7 0.3 0.22 12.1 0.0 2.5 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain PadR PF03551.14 gi|313116939|ref|YP_004038063.1| - 6.9e-15 54.8 0.8 8.2e-15 54.5 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|313116939|ref|YP_004038063.1| - 0.00013 22.4 0.0 0.00016 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|313116939|ref|YP_004038063.1| - 0.00025 21.1 0.0 0.00034 20.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|313116939|ref|YP_004038063.1| - 0.029 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|313116939|ref|YP_004038063.1| - 0.032 14.0 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) USP7_ICP0_bdg PF12436.8 gi|313116940|ref|YP_004038064.1| - 0.13 11.5 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 HxlR PF01638.17 gi|313116942|ref|YP_004038066.1| - 2.5e-27 94.6 0.0 3.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|313116942|ref|YP_004038066.1| - 0.0016 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family BAT PF15915.5 gi|313116944|ref|YP_004038068.1| - 2.5e-44 150.9 4.8 2.5e-44 150.9 4.8 2.5 3 0 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|313116944|ref|YP_004038068.1| - 8.3e-39 132.0 0.0 4.5e-15 55.8 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|313116944|ref|YP_004038068.1| - 3.1e-33 114.1 0.0 1.1e-09 38.3 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|313116944|ref|YP_004038068.1| - 1.2e-23 82.6 0.0 1.2e-07 31.5 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|313116944|ref|YP_004038068.1| - 8.2e-23 81.2 1.4 2.2e-10 41.0 0.0 2.9 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|313116944|ref|YP_004038068.1| - 7e-22 77.0 0.0 2e-21 75.5 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|313116944|ref|YP_004038068.1| - 1e-20 74.0 1.1 2.7e-06 27.6 0.0 4.3 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|313116944|ref|YP_004038068.1| - 1.4e-18 66.9 0.0 1e-05 25.7 0.0 4.8 3 1 1 4 4 4 3 PAS fold GAF_3 PF13492.6 gi|313116944|ref|YP_004038068.1| - 1.8e-15 57.4 0.3 1.2e-06 28.9 0.1 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|313116944|ref|YP_004038068.1| - 5.4e-08 33.5 0.1 0.023 15.4 0.0 2.8 2 1 0 2 2 2 2 GAF domain Sigma70_r4_2 PF08281.12 gi|313116944|ref|YP_004038068.1| - 0.0033 17.1 0.0 0.0098 15.5 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_11 PF14598.6 gi|313116944|ref|YP_004038068.1| - 0.0068 16.5 0.0 3.1 8.0 0.0 3.4 3 0 0 3 3 3 1 PAS domain Sigma70_r4 PF04545.16 gi|313116944|ref|YP_004038068.1| - 0.043 13.3 0.0 0.12 11.9 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|313116944|ref|YP_004038068.1| - 0.06 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF134 PF02001.16 gi|313116944|ref|YP_004038068.1| - 0.06 13.9 0.0 0.2 12.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS_2 PF08446.11 gi|313116944|ref|YP_004038068.1| - 0.063 14.0 0.0 0.44 11.2 0.0 2.6 2 0 0 2 2 1 0 PAS fold PAS_12 PF18095.1 gi|313116944|ref|YP_004038068.1| - 0.066 12.9 0.0 12 5.5 0.0 3.1 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HTH_24 PF13412.6 gi|313116944|ref|YP_004038068.1| - 0.084 12.5 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LUC7 PF03194.15 gi|313116944|ref|YP_004038068.1| - 0.11 12.1 1.4 0.3 10.7 1.4 1.6 1 0 0 1 1 1 0 LUC7 N_terminus ATP-cone PF03477.16 gi|313116944|ref|YP_004038068.1| - 0.13 12.8 0.6 9 6.9 0.0 3.0 2 0 0 2 2 2 0 ATP cone domain DUF5315 PF17242.2 gi|313116944|ref|YP_004038068.1| - 0.27 11.1 2.0 18 5.3 0.8 2.8 2 0 0 2 2 2 0 Disordered region of unknown function (DUF5315) CBS PF00571.28 gi|313116945|ref|YP_004038069.1| - 4.5e-21 75.1 0.4 3.7e-09 36.9 0.0 2.6 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|313116945|ref|YP_004038069.1| - 1.2e-19 70.1 0.0 2.3e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313116945|ref|YP_004038069.1| - 1e-07 32.1 0.0 2.6e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313116945|ref|YP_004038069.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily Copper-bind PF00127.20 gi|313116947|ref|YP_004038071.1| - 1.9e-08 34.6 0.1 2.6e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313116947|ref|YP_004038071.1| - 2.7e-07 30.6 0.0 1.2e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.15 gi|313116947|ref|YP_004038071.1| - 2.5e-05 24.3 0.2 4.2e-05 23.5 0.2 1.4 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|313116947|ref|YP_004038071.1| - 0.00054 19.7 0.2 0.0021 17.8 0.2 2.0 1 1 0 1 1 1 1 Multicopper oxidase SoxE PF06525.11 gi|313116947|ref|YP_004038071.1| - 0.0043 16.6 0.0 0.014 14.9 0.0 1.9 1 1 0 1 1 1 1 Sulfocyanin (SoxE) domain TAT_signal PF10518.9 gi|313116947|ref|YP_004038071.1| - 0.046 13.6 0.4 0.093 12.6 0.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3553 PF12073.8 gi|313116947|ref|YP_004038071.1| - 0.1 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) TALPID3 PF15324.6 gi|313116947|ref|YP_004038071.1| - 1.8 6.1 9.2 2.4 5.7 9.2 1.1 1 0 0 1 1 1 0 Hedgehog signalling target DUF3558 PF12079.8 gi|313116947|ref|YP_004038071.1| - 5.7 6.9 16.8 1 9.3 12.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3558) FecR PF04773.13 gi|313116948|ref|YP_004038072.1| - 0.012 16.2 1.7 2 9.1 0.0 4.3 3 1 1 4 4 4 0 FecR protein DUF3868 PF12984.7 gi|313116948|ref|YP_004038072.1| - 0.054 13.3 5.1 28 4.6 0.0 5.3 5 1 1 6 6 6 0 Domain of unknown function, B. Theta Gene description (DUF3868) FecR PF04773.13 gi|313116949|ref|YP_004038073.1| - 0.00073 20.1 0.2 75 4.1 0.0 5.6 2 2 1 6 6 6 1 FecR protein DUF3868 PF12984.7 gi|313116949|ref|YP_004038073.1| - 0.11 12.2 6.5 34 4.3 0.0 5.6 5 2 2 7 7 7 0 Domain of unknown function, B. Theta Gene description (DUF3868) zf-Di19 PF05605.12 gi|313116950|ref|YP_004038074.1| - 0.047 14.0 0.7 0.095 13.0 0.6 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|313116950|ref|YP_004038074.1| - 0.14 12.6 0.8 0.31 11.5 0.1 1.9 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-H2C2_2 PF13465.6 gi|313116950|ref|YP_004038074.1| - 1.4 9.5 3.7 41 4.8 0.7 2.6 3 0 0 3 3 3 0 Zinc-finger double domain TrmB PF01978.19 gi|313116951|ref|YP_004038075.1| - 8.9e-06 25.5 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313116951|ref|YP_004038075.1| - 0.00015 21.5 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|313116951|ref|YP_004038075.1| - 0.00028 20.8 0.1 0.00058 19.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|313116951|ref|YP_004038075.1| - 0.00083 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313116951|ref|YP_004038075.1| - 0.0016 18.0 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|313116951|ref|YP_004038075.1| - 0.0023 17.8 0.0 0.0069 16.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313116951|ref|YP_004038075.1| - 0.0026 17.5 0.1 0.007 16.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|313116951|ref|YP_004038075.1| - 0.0026 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|313116951|ref|YP_004038075.1| - 0.0048 16.9 0.0 0.014 15.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|313116951|ref|YP_004038075.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|313116951|ref|YP_004038075.1| - 0.018 15.1 0.2 0.046 13.9 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313116951|ref|YP_004038075.1| - 0.022 14.7 0.1 0.05 13.6 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|313116951|ref|YP_004038075.1| - 0.054 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313116951|ref|YP_004038075.1| - 0.073 13.3 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|313116951|ref|YP_004038075.1| - 0.077 12.9 0.1 0.34 10.8 0.1 2.1 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|313116951|ref|YP_004038075.1| - 0.078 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Trp_repressor PF01371.19 gi|313116951|ref|YP_004038075.1| - 0.082 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein DUF1724 PF08350.10 gi|313116951|ref|YP_004038075.1| - 0.092 12.9 1.3 0.16 12.1 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1724) GM_CSF PF01109.17 gi|313116952|ref|YP_004038076.1| - 0.073 13.2 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor DUF3540 PF12059.8 gi|313116953|ref|YP_004038077.1| - 0.0034 17.2 0.1 0.65 9.8 0.0 2.8 2 1 2 4 4 4 1 Protein of unknown function (DUF3540) DUF2345 PF10106.9 gi|313116953|ref|YP_004038077.1| - 0.0095 15.8 0.0 8 6.3 0.0 3.2 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2345) FecR PF04773.13 gi|313116953|ref|YP_004038077.1| - 0.017 15.7 0.1 12 6.5 0.0 3.5 1 1 2 3 3 3 0 FecR protein Cadherin-like PF12733.7 gi|313116953|ref|YP_004038077.1| - 1.5 9.4 13.0 27 5.4 2.1 3.7 1 1 2 3 3 3 0 Cadherin-like beta sandwich domain FecR PF04773.13 gi|313116956|ref|YP_004038080.1| - 0.021 15.4 1.1 41 4.9 0.0 4.5 4 2 1 5 5 5 0 FecR protein HtaA PF04213.13 gi|313116956|ref|YP_004038080.1| - 0.56 10.7 19.6 0.4 11.1 1.8 4.1 3 1 1 4 4 4 0 Htaa HxlR PF01638.17 gi|313116957|ref|YP_004038081.1| - 2.1e-20 72.3 0.0 3.3e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HxlR PF01638.17 gi|313116959|ref|YP_004038083.1| - 2.2e-25 88.3 0.0 2.8e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|313116959|ref|YP_004038083.1| - 0.074 12.9 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|313116959|ref|YP_004038083.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DDE_Tnp_IS240 PF13610.6 gi|313116960|ref|YP_004038084.1| - 6.3e-32 110.7 0.0 1.1e-31 109.9 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116960|ref|YP_004038084.1| - 1.1e-06 28.3 0.3 2.3e-06 27.3 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116960|ref|YP_004038084.1| - 0.03 14.5 0.1 0.059 13.6 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116960|ref|YP_004038084.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116960|ref|YP_004038084.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family Citrate_synt PF00285.21 gi|313116961|ref|YP_004038085.1| - 3.6e-105 352.0 0.0 4.1e-105 351.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TetR_C_27 PF17935.1 gi|313116961|ref|YP_004038085.1| - 0.11 12.6 0.2 14 5.8 0.0 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Cu-oxidase_3 PF07732.15 gi|313116962|ref|YP_004038086.1| - 3.9e-10 39.8 0.1 7.6e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 Multicopper oxidase Copper-bind PF00127.20 gi|313116962|ref|YP_004038086.1| - 2.4e-06 27.9 0.4 2.1e-05 24.9 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|313116962|ref|YP_004038086.1| - 3.2e-06 26.9 1.2 0.00011 22.0 0.4 2.8 2 1 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|313116962|ref|YP_004038086.1| - 0.0054 16.8 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.20 gi|313116963|ref|YP_004038087.1| - 1.5e-58 198.7 52.9 1.5e-58 198.7 52.9 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|313116963|ref|YP_004038087.1| - 8.2e-05 22.9 1.4 8.2e-05 22.9 1.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) CPP1-like PF11833.8 gi|313116964|ref|YP_004038088.1| - 0.00028 20.6 1.2 0.00034 20.3 1.2 1.1 1 0 0 1 1 1 1 Protein CHAPERONE-LIKE PROTEIN OF POR1-like YtpI PF14007.6 gi|313116964|ref|YP_004038088.1| - 0.034 14.3 1.0 0.12 12.5 0.5 1.9 1 1 1 2 2 2 0 YtpI-like protein DUF4345 PF14248.6 gi|313116964|ref|YP_004038088.1| - 0.043 13.7 3.0 0.051 13.5 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) DUF2534 PF10749.9 gi|313116964|ref|YP_004038088.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2534) HTH_20 PF12840.7 gi|313116965|ref|YP_004038089.1| - 1e-11 44.7 0.2 1.5e-11 44.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313116965|ref|YP_004038089.1| - 0.00013 21.7 0.0 0.00029 20.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313116965|ref|YP_004038089.1| - 0.00051 19.9 0.0 0.00074 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313116965|ref|YP_004038089.1| - 0.014 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|313116965|ref|YP_004038089.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 gi|313116966|ref|YP_004038090.1| - 1.5e-18 66.4 0.1 2.4e-18 65.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|313116966|ref|YP_004038090.1| - 0.0021 17.8 1.7 0.1 12.4 0.0 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain BAT PF15915.5 gi|313116966|ref|YP_004038090.1| - 0.0038 17.1 0.2 0.0075 16.2 0.2 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PuR_N PF09182.10 gi|313116966|ref|YP_004038090.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal MarR_2 PF12802.7 gi|313116966|ref|YP_004038090.1| - 0.012 15.5 0.2 0.051 13.5 0.1 2.2 3 0 0 3 3 3 0 MarR family HTH_35 PF13693.6 gi|313116966|ref|YP_004038090.1| - 0.03 14.4 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 gi|313116966|ref|YP_004038090.1| - 0.047 13.3 0.0 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NYD-SP28 PF14772.6 gi|313116966|ref|YP_004038090.1| - 0.072 13.1 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Sperm tail HTH_20 PF12840.7 gi|313116966|ref|YP_004038090.1| - 0.076 13.1 0.7 0.92 9.6 0.4 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|313116966|ref|YP_004038090.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2249 PF10006.9 gi|313116967|ref|YP_004038091.1| - 1.8e-21 75.7 0.1 2.1e-21 75.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|313116968|ref|YP_004038092.1| - 5e-15 55.1 0.8 5.9e-15 54.9 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|313116968|ref|YP_004038092.1| - 0.00041 20.1 0.0 0.00051 19.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Y2_Tnp PF04986.13 gi|313116968|ref|YP_004038092.1| - 0.057 13.5 0.0 0.07 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative transposase Radical_SAM PF04055.21 gi|313116969|ref|YP_004038093.1| - 5.3e-19 69.2 0.0 7.2e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|313116969|ref|YP_004038093.1| - 3.8e-06 27.2 0.0 5.9e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|313116969|ref|YP_004038093.1| - 4.4e-05 23.6 0.0 9.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|313116969|ref|YP_004038093.1| - 0.00047 20.6 0.0 0.0011 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain GlutR_dimer PF00745.20 gi|313116970|ref|YP_004038094.1| - 5.8e-09 36.3 1.1 7e-09 36.0 1.1 1.1 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain EcoEI_R_C PF08463.10 gi|313116970|ref|YP_004038094.1| - 0.051 13.7 0.0 0.055 13.6 0.0 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal DUF2564 PF10819.8 gi|313116970|ref|YP_004038094.1| - 0.065 13.6 0.3 0.092 13.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2564) Copper-bind PF00127.20 gi|313116971|ref|YP_004038095.1| - 5.5e-15 55.6 1.2 2.7e-14 53.4 1.2 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313116971|ref|YP_004038095.1| - 5e-05 23.3 0.1 7.1e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|313116971|ref|YP_004038095.1| - 0.00056 19.6 2.4 0.001 18.8 2.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ACCA PF03255.14 gi|313116974|ref|YP_004038098.1| - 0.095 12.6 0.0 0.095 12.6 0.0 1.1 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Ectatomin PF06457.11 gi|313116974|ref|YP_004038098.1| - 0.17 11.8 0.0 0.27 11.2 0.0 1.4 1 1 0 1 1 1 0 Ectatomin Cu-oxidase_2 PF07731.14 gi|313116975|ref|YP_004038099.1| - 7.7e-30 103.4 13.3 2.1e-18 66.4 4.2 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|313116975|ref|YP_004038099.1| - 2.5e-22 79.1 5.6 1.1e-18 67.4 0.5 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|313116975|ref|YP_004038099.1| - 5.3e-12 46.1 0.2 2.3e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|313116975|ref|YP_004038099.1| - 3.5e-06 27.1 0.0 0.026 14.6 0.0 2.6 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|313116975|ref|YP_004038099.1| - 0.081 12.8 2.2 0.13 12.1 2.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|313116976|ref|YP_004038100.1| - 2e-29 101.9 8.5 3.7e-14 52.9 0.8 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family DUF2924 PF11149.8 gi|313116976|ref|YP_004038100.1| - 0.039 14.3 0.4 6.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) DUF272 PF03312.15 gi|313116976|ref|YP_004038100.1| - 0.099 12.9 0.1 21 5.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF272) Herpes_LMP2 PF07415.11 gi|313116976|ref|YP_004038100.1| - 7.7 5.2 6.5 13 4.4 6.5 1.3 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein Peripla_BP_2 PF01497.18 gi|313116977|ref|YP_004038101.1| - 5e-15 55.7 0.0 7.1e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein UCR_Fe-S_N PF10399.9 gi|313116977|ref|YP_004038101.1| - 1.5 8.2 4.1 29 4.1 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aminotran_5 PF00266.19 gi|313116978|ref|YP_004038102.1| - 7.6e-147 489.1 0.0 9.1e-147 488.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.16 gi|313116978|ref|YP_004038102.1| - 1.1e-14 54.7 0.0 2e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DegT_DnrJ_EryC1 PF01041.17 gi|313116978|ref|YP_004038102.1| - 1.6e-10 40.8 0.3 2.9e-10 40.0 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313116978|ref|YP_004038102.1| - 1.8e-06 27.4 0.0 2.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313116978|ref|YP_004038102.1| - 7e-05 21.5 0.1 0.00015 20.4 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|313116978|ref|YP_004038102.1| - 0.0074 15.0 0.0 0.026 13.3 0.1 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|313116978|ref|YP_004038102.1| - 0.056 12.4 0.0 0.24 10.3 0.0 1.8 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Cloacin PF03515.14 gi|313116978|ref|YP_004038102.1| - 0.22 11.2 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain Glyoxalase PF00903.25 gi|313116979|ref|YP_004038103.1| - 1.3e-16 60.9 0.0 1.6e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313116979|ref|YP_004038103.1| - 9.9e-12 45.1 0.0 1.2e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|313116979|ref|YP_004038103.1| - 2e-06 27.7 0.0 1.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|313116979|ref|YP_004038103.1| - 0.00016 21.9 0.0 0.00025 21.2 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|313116979|ref|YP_004038103.1| - 0.00035 21.3 0.0 0.00049 20.9 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Cdc6_C PF09079.11 gi|313116980|ref|YP_004038104.1| - 2e-16 59.7 0.1 9.1e-16 57.6 0.0 2.2 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|313116980|ref|YP_004038104.1| - 4.6e-13 49.9 0.3 1.8e-12 48.0 0.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313116980|ref|YP_004038104.1| - 7.1e-12 45.8 0.1 2.3e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|313116980|ref|YP_004038104.1| - 3.9e-06 26.2 0.0 9.7e-06 24.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|313116980|ref|YP_004038104.1| - 2.9e-05 24.1 0.0 7.1e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313116980|ref|YP_004038104.1| - 3.9e-05 24.1 0.2 0.00013 22.4 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313116980|ref|YP_004038104.1| - 4.9e-05 23.1 0.0 9.4e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|313116980|ref|YP_004038104.1| - 0.00022 20.5 0.0 0.00031 20.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|313116980|ref|YP_004038104.1| - 0.00031 20.9 0.0 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|313116980|ref|YP_004038104.1| - 0.00053 19.8 0.6 0.011 15.5 0.3 2.3 1 1 1 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|313116980|ref|YP_004038104.1| - 0.00074 20.0 0.0 0.0021 18.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.12 gi|313116980|ref|YP_004038104.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_32 PF13654.6 gi|313116980|ref|YP_004038104.1| - 0.00091 18.1 0.1 0.21 10.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain DUF2791 PF10923.8 gi|313116980|ref|YP_004038104.1| - 0.001 18.0 0.0 0.0061 15.4 0.0 2.0 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) RNA_helicase PF00910.22 gi|313116980|ref|YP_004038104.1| - 0.0016 18.8 0.1 0.0056 17.1 0.1 2.1 1 1 0 1 1 1 1 RNA helicase AAA_30 PF13604.6 gi|313116980|ref|YP_004038104.1| - 0.0036 17.1 0.2 0.01 15.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|313116980|ref|YP_004038104.1| - 0.0048 16.4 0.1 0.015 14.8 0.1 1.8 1 1 1 2 2 2 1 P-loop containing dynein motor region TniB PF05621.11 gi|313116980|ref|YP_004038104.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_25 PF13481.6 gi|313116980|ref|YP_004038104.1| - 0.009 15.6 0.7 0.17 11.5 0.0 2.9 2 2 0 2 2 2 1 AAA domain KAP_NTPase PF07693.14 gi|313116980|ref|YP_004038104.1| - 0.011 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain PhoH PF02562.16 gi|313116980|ref|YP_004038104.1| - 0.015 14.7 0.1 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ATPase_2 PF01637.18 gi|313116980|ref|YP_004038104.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DnaB_C PF03796.15 gi|313116980|ref|YP_004038104.1| - 0.047 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DEAD PF00270.29 gi|313116980|ref|YP_004038104.1| - 0.049 13.4 1.2 5.3 6.8 0.1 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|313116980|ref|YP_004038104.1| - 0.049 13.6 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DAP3 PF10236.9 gi|313116980|ref|YP_004038104.1| - 0.058 12.6 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_2 PF07724.14 gi|313116980|ref|YP_004038104.1| - 0.063 13.4 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.14 gi|313116980|ref|YP_004038104.1| - 0.066 12.4 0.1 0.34 10.0 0.1 2.1 2 1 0 2 2 2 0 PIF1-like helicase AAA_lid_3 PF17862.1 gi|313116980|ref|YP_004038104.1| - 0.075 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA+ lid domain Phage-MuB_C PF09077.11 gi|313116980|ref|YP_004038104.1| - 0.08 12.8 0.9 0.44 10.5 0.0 2.6 2 1 0 2 2 2 0 Mu B transposition protein, C terminal Zeta_toxin PF06414.12 gi|313116980|ref|YP_004038104.1| - 0.083 12.2 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|313116981|ref|YP_004038105.1| - 6.6e-39 133.4 0.0 1.9e-38 131.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313116981|ref|YP_004038105.1| - 1.2e-08 34.6 0.2 3.7e-08 33.1 0.2 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|313116981|ref|YP_004038105.1| - 1.4e-06 28.4 0.6 9.9e-06 25.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|313116981|ref|YP_004038105.1| - 2.9e-05 24.2 0.1 0.00014 22.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 gi|313116981|ref|YP_004038105.1| - 3.5e-05 23.6 0.0 0.00013 21.7 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|313116981|ref|YP_004038105.1| - 7.6e-05 23.3 0.0 0.00015 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313116981|ref|YP_004038105.1| - 0.00016 22.0 1.3 0.0017 18.6 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313116981|ref|YP_004038105.1| - 0.0026 18.1 0.1 0.0026 18.1 0.1 3.5 2 2 1 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|313116981|ref|YP_004038105.1| - 0.0048 16.6 0.0 0.015 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|313116981|ref|YP_004038105.1| - 0.0054 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|313116981|ref|YP_004038105.1| - 0.007 15.6 0.4 0.29 10.3 0.0 2.5 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 gi|313116981|ref|YP_004038105.1| - 0.0082 15.4 0.0 0.015 14.6 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|313116981|ref|YP_004038105.1| - 0.0085 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|313116981|ref|YP_004038105.1| - 0.0085 15.3 0.0 0.15 11.2 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|313116981|ref|YP_004038105.1| - 0.0094 15.7 0.0 0.025 14.3 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|313116981|ref|YP_004038105.1| - 0.01 15.9 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_3 PF07726.11 gi|313116981|ref|YP_004038105.1| - 0.016 15.0 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|313116981|ref|YP_004038105.1| - 0.029 14.3 0.3 9.8 6.1 0.0 2.5 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|313116981|ref|YP_004038105.1| - 0.033 14.6 0.0 0.067 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|313116981|ref|YP_004038105.1| - 0.054 13.7 6.6 0.25 11.6 0.0 3.6 3 1 0 3 3 3 0 AAA domain Cytidylate_kin2 PF13189.6 gi|313116981|ref|YP_004038105.1| - 0.056 13.6 0.1 0.84 9.7 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_11 PF13086.6 gi|313116981|ref|YP_004038105.1| - 0.063 13.1 0.1 0.19 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|313116981|ref|YP_004038105.1| - 0.071 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_19 PF13245.6 gi|313116981|ref|YP_004038105.1| - 0.082 13.2 0.2 0.26 11.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|313116981|ref|YP_004038105.1| - 0.084 13.0 0.0 0.31 11.1 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|313116981|ref|YP_004038105.1| - 0.089 12.2 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.18 gi|313116981|ref|YP_004038105.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TsaE PF02367.17 gi|313116981|ref|YP_004038105.1| - 0.12 12.3 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|313116981|ref|YP_004038105.1| - 0.16 11.5 0.0 0.37 10.3 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region DXP_reductoisom PF02670.16 gi|313116981|ref|YP_004038105.1| - 0.44 11.3 1.4 0.66 10.7 0.1 1.9 2 0 0 2 2 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDE_Tnp_IS240 PF13610.6 gi|313116982|ref|YP_004038106.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116982|ref|YP_004038106.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116982|ref|YP_004038106.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116982|ref|YP_004038106.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116982|ref|YP_004038106.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family Cylicin_N PF15241.6 gi|313116983|ref|YP_004038107.1| - 0.078 13.1 1.0 0.15 12.2 0.1 1.9 1 1 1 2 2 2 0 Cylicin N-terminus Presenilin PF01080.17 gi|313116983|ref|YP_004038107.1| - 0.17 10.6 7.7 0.18 10.5 7.7 1.0 1 0 0 1 1 1 0 Presenilin Borrelia_P83 PF05262.11 gi|313116983|ref|YP_004038107.1| - 0.29 9.6 10.0 0.33 9.4 10.0 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Spore_coat_CotO PF14153.6 gi|313116983|ref|YP_004038107.1| - 0.4 10.6 13.2 0.49 10.3 13.2 1.2 1 0 0 1 1 1 0 Spore coat protein CotO Mucin PF01456.17 gi|313116983|ref|YP_004038107.1| - 1.1 9.2 8.3 1.4 8.9 8.3 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF4746 PF15928.5 gi|313116983|ref|YP_004038107.1| - 1.1 8.6 12.3 1.4 8.2 12.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) NPR3 PF03666.13 gi|313116983|ref|YP_004038107.1| - 1.7 7.3 12.7 1.8 7.3 12.7 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Sec62 PF03839.16 gi|313116983|ref|YP_004038107.1| - 3 7.3 8.9 3.3 7.2 8.9 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 Hid1 PF12722.7 gi|313116983|ref|YP_004038107.1| - 7 4.6 9.8 7.7 4.5 9.8 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein SAPS PF04499.15 gi|313116983|ref|YP_004038107.1| - 7.3 5.2 13.0 8.5 5.0 13.0 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CDC45 PF02724.14 gi|313116983|ref|YP_004038107.1| - 7.4 4.7 16.0 8.2 4.6 16.0 1.1 1 0 0 1 1 1 0 CDC45-like protein SLC12 PF03522.15 gi|313116983|ref|YP_004038107.1| - 9.1 5.2 8.6 10 5.0 8.6 1.1 1 0 0 1 1 1 0 Solute carrier family 12 AAA_31 PF13614.6 gi|313116984|ref|YP_004038108.1| - 6.5e-44 150.0 0.0 9.4e-44 149.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313116984|ref|YP_004038108.1| - 9.2e-21 74.2 0.0 1.2e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|313116984|ref|YP_004038108.1| - 1.5e-12 47.4 2.2 1.1e-05 24.9 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|313116984|ref|YP_004038108.1| - 7.6e-10 38.7 0.0 2.8e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|313116984|ref|YP_004038108.1| - 2.4e-09 37.0 0.2 2.1e-08 33.9 0.2 2.3 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|313116984|ref|YP_004038108.1| - 2.4e-08 33.8 0.0 0.00016 21.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|313116984|ref|YP_004038108.1| - 6.3e-07 28.9 1.9 7.3e-06 25.4 0.6 3.2 1 1 2 3 3 3 1 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|313116984|ref|YP_004038108.1| - 0.0072 16.1 3.8 0.67 9.7 3.3 3.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein adh_short_C2 PF13561.6 gi|313116984|ref|YP_004038108.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase CLP1_P PF16575.5 gi|313116984|ref|YP_004038108.1| - 0.045 13.5 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|313116984|ref|YP_004038108.1| - 0.11 12.3 0.0 0.26 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Pyridox_ox_2 PF12900.7 gi|313116985|ref|YP_004038109.1| - 1.2e-17 64.2 0.0 1.3e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|313116985|ref|YP_004038109.1| - 0.00055 20.1 0.0 0.0007 19.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FB_lectin PF07367.11 gi|313116985|ref|YP_004038109.1| - 0.046 13.7 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Fungal fruit body lectin PPDK_N PF01326.19 gi|313116986|ref|YP_004038110.1| - 4.7e-81 272.6 0.0 6.7e-81 272.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|313116986|ref|YP_004038110.1| - 3.3e-21 74.8 0.2 7.4e-21 73.7 0.2 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PDEase_I_N PF08499.12 gi|313116986|ref|YP_004038110.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal Beta-lactamase PF00144.24 gi|313116987|ref|YP_004038111.1| - 1.2e-51 175.9 1.4 2.2e-51 175.1 1.4 1.3 1 0 0 1 1 1 1 Beta-lactamase TMEM65 PF10507.9 gi|313116987|ref|YP_004038111.1| - 0.044 13.7 0.1 0.27 11.2 0.0 2.3 2 0 0 2 2 2 0 Transmembrane protein 65 Usp PF00582.26 gi|313116988|ref|YP_004038112.1| - 0.044 14.3 0.0 1.9 9.0 0.0 2.8 3 0 0 3 3 3 0 Universal stress protein family IU_nuc_hydro PF01156.19 gi|313116990|ref|YP_004038114.1| - 9.7e-79 265.1 0.8 1.1e-78 264.9 0.8 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase adh_short_C2 PF13561.6 gi|313116991|ref|YP_004038115.1| - 1.2e-68 231.2 0.1 1.5e-68 230.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313116991|ref|YP_004038115.1| - 6.9e-55 185.5 0.1 8.9e-55 185.2 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313116991|ref|YP_004038115.1| - 1.1e-15 58.0 0.0 1.9e-15 57.3 0.0 1.4 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|313116991|ref|YP_004038115.1| - 0.00043 20.2 0.1 0.0006 19.7 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|313116991|ref|YP_004038115.1| - 0.00075 19.0 0.1 0.0013 18.3 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313116991|ref|YP_004038115.1| - 0.002 17.2 0.1 0.0025 16.9 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|313116991|ref|YP_004038115.1| - 0.0061 16.8 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|313116991|ref|YP_004038115.1| - 0.0089 15.4 0.8 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|313116991|ref|YP_004038115.1| - 0.014 15.5 0.1 0.025 14.6 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DFP PF04127.15 gi|313116991|ref|YP_004038115.1| - 0.034 14.0 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein PfkB PF00294.24 gi|313116992|ref|YP_004038116.1| - 4.7e-42 144.3 5.9 1.3e-41 142.8 5.9 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|313116992|ref|YP_004038116.1| - 5.4e-06 26.0 0.0 0.00035 20.0 0.0 2.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|313116992|ref|YP_004038116.1| - 0.00033 20.2 0.6 0.0018 17.8 0.6 2.0 1 1 0 1 1 1 1 Carbohydrate kinase PepSY_2 PF13670.6 gi|313116992|ref|YP_004038116.1| - 0.016 15.2 0.9 0.048 13.7 0.9 1.8 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain XdhC_C PF13478.6 gi|313116992|ref|YP_004038116.1| - 0.051 14.1 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain DUF4232 PF14016.6 gi|313116993|ref|YP_004038117.1| - 0.0018 18.4 2.2 0.0051 17.0 0.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF4232) BsuPI PF12690.7 gi|313116993|ref|YP_004038117.1| - 0.017 15.1 0.0 0.29 11.2 0.0 2.2 1 1 0 1 1 1 0 Intracellular proteinase inhibitor Pyr_redox_2 PF07992.14 gi|313116994|ref|YP_004038118.1| - 9.1e-12 44.8 0.5 2.9e-07 30.0 0.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313116994|ref|YP_004038118.1| - 2.3e-08 33.7 0.0 0.004 16.4 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313116994|ref|YP_004038118.1| - 2.4e-07 30.7 4.9 2.3e-05 24.2 0.6 2.9 1 1 3 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|313116994|ref|YP_004038118.1| - 1e-06 28.1 0.5 3e-06 26.6 0.5 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|313116994|ref|YP_004038118.1| - 1.5e-06 27.5 3.7 3.4e-06 26.4 0.1 2.7 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|313116994|ref|YP_004038118.1| - 2.5e-06 27.1 0.7 2.5e-06 27.1 0.7 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313116994|ref|YP_004038118.1| - 4.1e-06 25.7 0.1 0.00011 21.1 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|313116994|ref|YP_004038118.1| - 4.5e-06 26.8 0.3 1.1e-05 25.5 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|313116994|ref|YP_004038118.1| - 9.8e-06 25.0 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|313116994|ref|YP_004038118.1| - 2.1e-05 23.8 0.1 0.0082 15.2 0.0 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|313116994|ref|YP_004038118.1| - 0.00048 19.5 0.0 0.00072 18.9 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|313116994|ref|YP_004038118.1| - 0.0013 19.2 0.1 0.0045 17.5 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313116994|ref|YP_004038118.1| - 0.0021 17.3 0.1 0.0073 15.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 gi|313116994|ref|YP_004038118.1| - 0.084 12.9 3.7 0.93 9.5 0.1 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding TMP-TENI PF02581.17 gi|313116995|ref|YP_004038119.1| - 1.6e-60 203.6 3.4 2.2e-60 203.1 3.4 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|313116995|ref|YP_004038119.1| - 2.4e-06 27.1 3.9 2.4e-06 27.1 3.9 2.1 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|313116995|ref|YP_004038119.1| - 3e-05 23.4 2.6 3e-05 23.4 2.6 1.7 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|313116995|ref|YP_004038119.1| - 6.7e-05 22.4 7.2 9.1e-05 22.0 7.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|313116995|ref|YP_004038119.1| - 0.024 13.8 0.5 0.065 12.4 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|313116995|ref|YP_004038119.1| - 0.027 14.0 3.7 0.062 12.8 1.4 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein Dus PF01207.17 gi|313116995|ref|YP_004038119.1| - 0.1 11.7 0.9 0.14 11.3 0.5 1.5 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TniB PF05621.11 gi|313116995|ref|YP_004038119.1| - 0.13 11.7 0.1 15 4.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein HK PF02110.15 gi|313116996|ref|YP_004038120.1| - 9.4e-64 215.1 4.9 1.2e-63 214.8 4.9 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|313116996|ref|YP_004038120.1| - 1.6e-05 24.4 0.5 2.1e-05 24.0 0.5 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|313116996|ref|YP_004038120.1| - 0.13 11.7 8.3 0.076 12.5 5.1 1.8 1 1 1 2 2 2 0 Carbohydrate kinase adh_short_C2 PF13561.6 gi|313116997|ref|YP_004038121.1| - 1.3e-48 165.6 0.3 1.6e-48 165.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313116997|ref|YP_004038121.1| - 1e-42 145.9 0.2 1.4e-42 145.4 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313116997|ref|YP_004038121.1| - 5.1e-19 68.9 0.2 6.7e-19 68.5 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313116997|ref|YP_004038121.1| - 1.4e-07 31.2 0.3 3e-07 30.2 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|313116997|ref|YP_004038121.1| - 0.00024 20.3 0.0 0.00027 20.2 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313116997|ref|YP_004038121.1| - 0.0041 17.0 3.0 0.006 16.5 2.9 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|313116997|ref|YP_004038121.1| - 0.019 14.0 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|313116997|ref|YP_004038121.1| - 0.029 14.6 0.6 0.064 13.5 0.6 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|313116997|ref|YP_004038121.1| - 0.043 12.9 0.1 0.06 12.4 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Phos_pyr_kin PF08543.12 gi|313116998|ref|YP_004038122.1| - 7.3e-84 281.0 0.2 8.7e-84 280.7 0.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|313116998|ref|YP_004038122.1| - 7.9e-08 32.0 0.9 1.8e-07 30.8 0.9 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|313116998|ref|YP_004038122.1| - 0.0084 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|313116998|ref|YP_004038122.1| - 0.032 13.6 0.7 0.19 11.1 0.7 2.0 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family DrsE_2 PF13686.6 gi|313116999|ref|YP_004038123.1| - 3.1e-52 176.5 0.1 4e-52 176.2 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|313116999|ref|YP_004038123.1| - 3.1e-08 34.0 0.0 1.2e-07 32.1 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|313117000|ref|YP_004038124.1| - 7e-21 73.8 0.0 8e-21 73.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|313117000|ref|YP_004038124.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.27 gi|313117001|ref|YP_004038125.1| - 5.1e-20 72.3 4.8 7.4e-20 71.8 4.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|313117001|ref|YP_004038125.1| - 2.9e-09 37.4 0.0 5.6e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|313117001|ref|YP_004038125.1| - 0.00011 21.8 0.8 0.00031 20.3 0.9 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313117001|ref|YP_004038125.1| - 0.069 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Sulf_transp PF04143.14 gi|313117002|ref|YP_004038126.1| - 1.3e-12 47.9 11.8 1.6e-12 47.6 11.8 1.1 1 0 0 1 1 1 1 Sulphur transport GXGXG PF01493.19 gi|313117002|ref|YP_004038126.1| - 0.079 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 GXGXG motif Sulf_transp PF04143.14 gi|313117003|ref|YP_004038127.1| - 5.4e-08 32.7 18.1 8.2e-08 32.2 7.4 2.0 1 1 1 2 2 2 2 Sulphur transport DUF2207 PF09972.9 gi|313117003|ref|YP_004038127.1| - 0.44 9.3 7.8 0.02 13.7 0.8 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribonuc_red_sm PF00268.21 gi|313117005|ref|YP_004038129.1| - 1.1e-79 267.9 0.0 1.4e-79 267.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Ribonuc_red_lgC PF02867.15 gi|313117006|ref|YP_004038130.1| - 1.2e-182 608.1 0.0 1.5e-182 607.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|313117006|ref|YP_004038130.1| - 2.7e-21 75.4 0.0 2.1e-20 72.5 0.0 2.4 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TipAS PF07739.13 gi|313117006|ref|YP_004038130.1| - 0.077 13.5 0.2 5.1 7.7 0.0 2.7 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain ATP-cone PF03477.16 gi|313117006|ref|YP_004038130.1| - 0.16 12.5 0.2 0.61 10.7 0.2 2.0 1 0 0 1 1 1 0 ATP cone domain ATP-cone PF03477.16 gi|313117007|ref|YP_004038131.1| - 2.4e-15 56.9 0.1 3.3e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 gi|313117007|ref|YP_004038131.1| - 0.0017 18.3 1.5 0.0026 17.7 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|313117007|ref|YP_004038131.1| - 0.011 15.6 3.2 0.019 14.8 3.2 1.4 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|313117007|ref|YP_004038131.1| - 0.089 12.3 3.4 0.12 11.9 0.6 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.13 gi|313117007|ref|YP_004038131.1| - 0.092 12.8 0.4 0.16 12.1 0.1 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ZPR1 PF03367.13 gi|313117007|ref|YP_004038131.1| - 0.23 11.3 0.6 1.4 8.8 0.1 2.0 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Na_Ca_ex PF01699.24 gi|313117008|ref|YP_004038132.1| - 1.9e-40 138.3 34.4 9.7e-22 77.6 13.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein APH PF01636.23 gi|313117010|ref|YP_004038134.1| - 3.3e-19 69.8 4.3 5.7e-19 69.0 4.3 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|313117010|ref|YP_004038134.1| - 2.2e-07 30.4 0.0 2.2e-06 27.1 0.0 2.4 1 1 0 1 1 1 1 Fructosamine kinase DUF4128 PF13554.6 gi|313117010|ref|YP_004038134.1| - 0.006 16.6 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage related domain of unknown function HD PF01966.22 gi|313117010|ref|YP_004038134.1| - 0.095 12.9 0.4 0.27 11.5 0.4 1.7 1 1 0 1 1 1 0 HD domain Peptidase_S8 PF00082.22 gi|313117011|ref|YP_004038135.1| - 9.6e-27 94.0 2.2 1.9e-26 93.0 2.2 1.4 1 1 0 1 1 1 1 Subtilase family Rhomboid PF01694.22 gi|313117012|ref|YP_004038136.1| - 5.3e-18 65.4 19.6 5.3e-18 65.4 19.6 1.7 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|313117012|ref|YP_004038136.1| - 0.2 12.2 0.1 0.2 12.2 0.1 2.5 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) HTH_24 PF13412.6 gi|313117013|ref|YP_004038137.1| - 7.2e-08 31.9 0.0 1.1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117013|ref|YP_004038137.1| - 6.8e-07 29.1 0.1 8.1e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117013|ref|YP_004038137.1| - 1.1e-06 28.5 0.0 1.3e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|313117013|ref|YP_004038137.1| - 2.5e-05 23.8 0.1 3.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|313117013|ref|YP_004038137.1| - 0.0003 20.5 0.2 0.00044 20.0 0.2 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_CodY PF08222.11 gi|313117013|ref|YP_004038137.1| - 0.00078 18.9 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|313117013|ref|YP_004038137.1| - 0.0011 18.8 0.1 0.0018 18.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|313117013|ref|YP_004038137.1| - 0.0016 18.3 0.1 0.0025 17.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|313117013|ref|YP_004038137.1| - 0.0018 18.2 0.0 0.0034 17.3 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313117013|ref|YP_004038137.1| - 0.002 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|313117013|ref|YP_004038137.1| - 0.0021 17.9 0.1 0.0025 17.6 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|313117013|ref|YP_004038137.1| - 0.0021 18.1 0.1 0.0029 17.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117013|ref|YP_004038137.1| - 0.0041 17.6 0.1 0.0051 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|313117013|ref|YP_004038137.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 gi|313117013|ref|YP_004038137.1| - 0.013 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|313117013|ref|YP_004038137.1| - 0.016 15.3 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|313117013|ref|YP_004038137.1| - 0.026 14.9 0.0 0.037 14.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_54 PF18607.1 gi|313117013|ref|YP_004038137.1| - 0.064 13.3 0.0 0.08 13.0 0.0 1.2 1 0 0 1 1 1 0 ParA helix turn helix domain RepL PF05732.11 gi|313117013|ref|YP_004038137.1| - 0.071 12.5 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_43 PF09904.9 gi|313117013|ref|YP_004038137.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Pyr_redox_2 PF07992.14 gi|313117014|ref|YP_004038138.1| - 3.5e-17 62.6 3.2 4.4e-08 32.7 1.4 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313117014|ref|YP_004038138.1| - 9.1e-11 41.9 0.3 0.00027 20.6 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|313117014|ref|YP_004038138.1| - 9.2e-11 41.5 0.0 0.00029 20.2 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313117014|ref|YP_004038138.1| - 6.6e-10 38.2 0.0 3.3e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|313117014|ref|YP_004038138.1| - 8e-09 35.7 0.1 1.1e-05 25.5 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|313117014|ref|YP_004038138.1| - 3.3e-07 29.8 0.6 4.8e-05 22.6 0.1 2.4 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|313117014|ref|YP_004038138.1| - 4.9e-07 29.2 0.2 1.2e-06 27.9 0.0 1.7 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|313117014|ref|YP_004038138.1| - 1.2e-06 28.0 0.1 8e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313117014|ref|YP_004038138.1| - 9.6e-06 25.7 0.0 2.8e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|313117014|ref|YP_004038138.1| - 1.1e-05 24.5 1.8 0.0024 16.8 0.5 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|313117014|ref|YP_004038138.1| - 4e-05 23.1 0.0 6.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|313117014|ref|YP_004038138.1| - 6.8e-05 22.3 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|313117014|ref|YP_004038138.1| - 0.00017 20.8 0.3 0.057 12.5 0.1 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|313117014|ref|YP_004038138.1| - 0.0014 17.9 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|313117014|ref|YP_004038138.1| - 0.0067 17.0 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|313117014|ref|YP_004038138.1| - 0.016 14.5 0.1 0.059 12.7 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|313117014|ref|YP_004038138.1| - 0.09 13.3 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|313117014|ref|YP_004038138.1| - 0.13 12.7 0.0 0.17 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding LPG_synthase_TM PF03706.13 gi|313117015|ref|YP_004038139.1| - 1.3e-15 57.7 38.4 1.6e-15 57.5 38.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF3917 PF13055.6 gi|313117015|ref|YP_004038139.1| - 3 8.3 7.2 16 6.0 0.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) PAS_4 PF08448.10 gi|313117016|ref|YP_004038140.1| - 1.1e-39 135.0 12.9 9.1e-13 48.4 0.2 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|313117016|ref|YP_004038140.1| - 4.5e-28 97.5 0.4 2.6e-12 46.7 0.0 5.3 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|313117016|ref|YP_004038140.1| - 2.6e-24 85.5 0.0 2.3e-11 43.8 0.0 4.6 4 0 0 4 4 4 4 PAS domain Response_reg PF00072.24 gi|313117016|ref|YP_004038140.1| - 4.1e-22 78.5 0.0 1.2e-21 77.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|313117016|ref|YP_004038140.1| - 5e-20 71.1 3.7 9.3e-07 28.7 0.1 4.9 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|313117016|ref|YP_004038140.1| - 2.9e-15 56.8 0.0 6.7e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313117016|ref|YP_004038140.1| - 4.4e-11 42.7 1.5 4.4e-11 42.7 1.5 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|313117016|ref|YP_004038140.1| - 6.2e-10 39.2 0.0 6.8e-06 26.3 0.0 3.8 3 1 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|313117016|ref|YP_004038140.1| - 1.9e-07 31.3 0.4 0.019 15.1 0.0 5.1 4 3 1 5 5 5 2 PAS fold OKR_DC_1_N PF03709.15 gi|313117016|ref|YP_004038140.1| - 0.0007 19.8 0.1 0.018 15.3 0.0 3.0 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|313117016|ref|YP_004038140.1| - 0.046 13.7 0.0 0.16 11.9 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PrmC_N PF17827.1 gi|313117016|ref|YP_004038140.1| - 0.075 13.6 0.0 1.8 9.2 0.0 2.9 2 0 0 2 2 2 0 PrmC N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|313117017|ref|YP_004038141.1| - 4.2e-24 84.3 2.3 8.8e-24 83.2 2.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313117017|ref|YP_004038141.1| - 3.2e-21 75.7 0.0 6.9e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|313117017|ref|YP_004038141.1| - 0.0058 16.9 1.9 0.016 15.5 1.9 1.7 1 0 0 1 1 1 1 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|313117017|ref|YP_004038141.1| - 0.083 12.9 3.8 0.23 11.5 3.8 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|313117017|ref|YP_004038141.1| - 0.13 12.4 2.9 0.096 12.8 0.7 1.9 2 0 0 2 2 2 0 Ribosomal L37ae protein family HalOD1 PF18545.1 gi|313117018|ref|YP_004038142.1| - 2e-17 63.2 0.0 2.5e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 RNA_POL_M_15KD PF02150.16 gi|313117019|ref|YP_004038143.1| - 0.001 18.9 0.9 0.0014 18.5 0.9 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc-ribbons_6 PF07191.12 gi|313117019|ref|YP_004038143.1| - 0.0063 16.5 0.7 0.0089 16.0 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|313117019|ref|YP_004038143.1| - 0.0068 16.4 1.1 0.099 12.7 0.1 2.0 1 1 1 2 2 2 1 Transposase zinc-binding domain DpnI PF06044.12 gi|313117019|ref|YP_004038143.1| - 0.0096 15.6 0.2 0.01 15.5 0.2 1.1 1 0 0 1 1 1 1 Dam-replacing family Lar_restr_allev PF14354.6 gi|313117019|ref|YP_004038143.1| - 0.019 15.3 0.6 0.025 15.0 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|313117019|ref|YP_004038143.1| - 0.028 14.5 1.2 3.4 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.22 gi|313117019|ref|YP_004038143.1| - 0.034 14.0 0.5 0.047 13.6 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|313117019|ref|YP_004038143.1| - 0.16 11.7 3.6 4 7.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|313117019|ref|YP_004038143.1| - 0.55 10.0 5.5 0.92 9.3 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Usp PF00582.26 gi|313117020|ref|YP_004038144.1| - 3e-64 215.8 6.0 9.4e-35 120.2 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF5615 PF18480.1 gi|313117020|ref|YP_004038144.1| - 0.00047 19.9 0.1 1.3 8.9 0.1 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF5615) FR47 PF08445.10 gi|313117020|ref|YP_004038144.1| - 0.06 13.3 0.1 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein SHOCT PF09851.9 gi|313117021|ref|YP_004038145.1| - 5.3e-08 32.3 0.2 7.7e-08 31.8 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313117021|ref|YP_004038145.1| - 3e-05 24.0 0.5 5.5e-05 23.2 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|313117021|ref|YP_004038145.1| - 0.023 14.8 3.7 0.031 14.3 3.7 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2970 PF11174.8 gi|313117021|ref|YP_004038145.1| - 0.027 14.3 0.3 1.4 8.8 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2970) GvpG PF05120.12 gi|313117021|ref|YP_004038145.1| - 0.053 13.5 0.3 0.075 13.0 0.3 1.2 1 0 0 1 1 1 0 Gas vesicle protein G DUF4131 PF13567.6 gi|313117021|ref|YP_004038145.1| - 0.058 13.0 0.1 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) YihI PF04220.12 gi|313117021|ref|YP_004038145.1| - 0.078 12.7 0.2 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) TAFH PF07531.14 gi|313117021|ref|YP_004038145.1| - 0.14 12.2 0.2 0.27 11.3 0.0 1.5 2 0 0 2 2 2 0 NHR1 homology to TAF COX1 PF00115.20 gi|313117022|ref|YP_004038146.1| - 6.6e-09 35.1 45.6 0.00025 20.0 16.8 3.8 1 1 2 3 3 3 3 Cytochrome C and Quinol oxidase polypeptide I DUF2964 PF11177.8 gi|313117022|ref|YP_004038146.1| - 7.1 6.9 14.1 3.9 7.7 0.1 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2964) Oxidored_molyb PF00174.19 gi|313117023|ref|YP_004038147.1| - 3.8e-14 52.7 0.0 7e-14 51.8 0.0 1.4 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cupin_2 PF07883.11 gi|313117024|ref|YP_004038148.1| - 2.5e-06 27.1 0.1 3.8e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|313117024|ref|YP_004038148.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_2 PF07883.11 gi|313117025|ref|YP_004038149.1| - 2.3e-08 33.6 0.5 4.3e-08 32.7 0.2 1.6 1 1 1 2 2 2 1 Cupin domain Pirin_C_2 PF17954.1 gi|313117025|ref|YP_004038149.1| - 0.00025 21.2 0.0 0.00033 20.8 0.0 1.1 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain AraC_binding_2 PF14525.6 gi|313117025|ref|YP_004038149.1| - 0.0086 15.8 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain HutD PF05962.11 gi|313117025|ref|YP_004038149.1| - 0.0094 15.9 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 HutD AraC_binding PF02311.19 gi|313117025|ref|YP_004038149.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C PF05726.13 gi|313117025|ref|YP_004038149.1| - 0.098 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_3 PF05899.12 gi|313117025|ref|YP_004038149.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|313117025|ref|YP_004038149.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain PaaB PF06243.11 gi|313117026|ref|YP_004038150.1| - 1.4e-08 34.8 0.1 2e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|313117027|ref|YP_004038151.1| - 4.2e-25 89.0 0.0 1.4e-24 87.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|313117027|ref|YP_004038151.1| - 7.8e-11 42.4 0.0 1.6e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|313117027|ref|YP_004038151.1| - 4.9e-07 29.9 0.0 2.6e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|313117027|ref|YP_004038151.1| - 6.4e-05 23.4 0.0 0.00014 22.3 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Hydrolase PF00702.26 gi|313117027|ref|YP_004038151.1| - 0.1 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2249 PF10006.9 gi|313117028|ref|YP_004038152.1| - 1.4e-26 92.1 0.8 1.6e-26 92.0 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|313117028|ref|YP_004038152.1| - 0.02 14.7 0.0 0.049 13.4 0.0 1.6 2 0 0 2 2 2 0 Sulfurtransferase TusA Elf1 PF05129.13 gi|313117030|ref|YP_004038154.1| - 0.028 14.5 0.5 0.032 14.3 0.5 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like UPF0547 PF10571.9 gi|313117030|ref|YP_004038154.1| - 0.19 11.8 3.2 0.48 10.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_10 PF04967.12 gi|313117031|ref|YP_004038155.1| - 4e-18 65.0 0.0 6.4e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313117031|ref|YP_004038155.1| - 0.00022 21.1 0.6 0.0004 20.3 0.6 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GnHR_trans PF12369.8 gi|313117031|ref|YP_004038155.1| - 0.016 16.0 0.1 0.032 15.0 0.1 1.4 1 0 0 1 1 1 0 Gonadotropin hormone receptor transmembrane region DUF3587 PF12132.8 gi|313117031|ref|YP_004038155.1| - 0.054 12.9 0.8 0.094 12.2 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3587) Sigma70_r4 PF04545.16 gi|313117031|ref|YP_004038155.1| - 0.059 12.9 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Pcc1 PF09341.10 gi|313117031|ref|YP_004038155.1| - 0.06 13.5 0.2 0.17 12.1 0.1 1.8 2 0 0 2 2 2 0 Transcription factor Pcc1 LexA_DNA_bind PF01726.16 gi|313117031|ref|YP_004038155.1| - 0.089 12.6 0.1 0.27 11.1 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain GerE PF00196.19 gi|313117031|ref|YP_004038155.1| - 0.15 11.6 0.1 20 4.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family OppC_N PF12911.7 gi|313117032|ref|YP_004038156.1| - 0.96 9.5 10.3 6 6.9 0.9 3.9 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C Rieske PF00355.26 gi|313117033|ref|YP_004038157.1| - 8.8e-13 48.0 0.0 1.3e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HCV_NS1 PF01560.17 gi|313117033|ref|YP_004038157.1| - 0.1 11.2 0.2 0.14 10.8 0.2 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 Cytochrom_B_N_2 PF13631.6 gi|313117034|ref|YP_004038158.1| - 2.9e-44 151.0 0.8 2.9e-44 151.0 0.8 3.0 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|313117034|ref|YP_004038158.1| - 2.6e-30 105.7 15.1 1e-29 103.8 9.7 2.6 2 1 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|313117034|ref|YP_004038158.1| - 5.7e-05 23.3 1.2 5.7e-05 23.3 1.2 2.5 4 0 0 4 4 4 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|313117034|ref|YP_004038158.1| - 0.00045 20.7 6.6 0.00045 20.7 6.6 3.8 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) SP_C-Propep PF08999.10 gi|313117034|ref|YP_004038158.1| - 0.069 12.9 0.0 0.28 11.0 0.0 2.0 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Molybdopterin PF00384.22 gi|313117036|ref|YP_004038160.1| - 7.7e-93 311.8 0.0 1.2e-92 311.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|313117036|ref|YP_004038160.1| - 2.4e-20 72.6 0.0 5.2e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|313117036|ref|YP_004038160.1| - 0.038 14.0 0.4 0.094 12.7 0.4 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain HHH_5 PF14520.6 gi|313117036|ref|YP_004038160.1| - 0.061 13.9 0.0 0.21 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain Fer4_11 PF13247.6 gi|313117037|ref|YP_004038161.1| - 3e-29 101.1 6.3 3e-29 101.1 6.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313117037|ref|YP_004038161.1| - 3.9e-11 42.9 18.1 2e-05 24.6 7.8 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313117037|ref|YP_004038161.1| - 1.1e-10 41.9 15.7 5.6e-05 23.7 7.3 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313117037|ref|YP_004038161.1| - 6.6e-08 32.6 18.5 0.0034 17.5 7.0 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|313117037|ref|YP_004038161.1| - 0.00013 22.6 5.1 0.24 12.2 0.1 3.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|313117037|ref|YP_004038161.1| - 0.00022 21.2 29.5 0.0021 18.1 2.3 4.0 5 0 0 5 5 3 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|313117037|ref|YP_004038161.1| - 0.00034 21.1 19.6 0.11 13.1 0.1 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313117037|ref|YP_004038161.1| - 0.00056 20.0 18.4 0.03 14.5 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313117037|ref|YP_004038161.1| - 0.00076 19.2 29.8 0.014 15.2 2.7 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313117037|ref|YP_004038161.1| - 0.00086 19.3 26.4 0.011 15.8 0.9 4.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313117037|ref|YP_004038161.1| - 0.016 15.7 1.3 0.016 15.7 1.3 4.1 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|313117037|ref|YP_004038161.1| - 0.18 12.4 14.0 0.21 12.2 0.1 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|313117037|ref|YP_004038161.1| - 0.69 11.0 35.2 0.11 13.4 5.8 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313117037|ref|YP_004038161.1| - 2.4 9.2 27.1 5.8 7.9 1.0 4.0 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|313117037|ref|YP_004038161.1| - 4.6 7.8 23.8 2.5e+02 2.2 1.1 4.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain EB_dh PF09459.10 gi|313117038|ref|YP_004038162.1| - 8.2e-29 101.3 5.7 2.8e-14 53.7 0.1 2.1 1 1 1 2 2 2 2 Ethylbenzene dehydrogenase MSP1a PF11670.8 gi|313117038|ref|YP_004038162.1| - 0.079 12.2 1.6 0.15 11.3 1.6 1.4 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) Nitrate_red_del PF02613.15 gi|313117039|ref|YP_004038163.1| - 6.1e-10 39.2 0.1 1.7e-09 37.8 0.1 1.9 1 1 0 1 1 1 1 Nitrate reductase delta subunit FixS PF03597.15 gi|313117040|ref|YP_004038164.1| - 0.0097 15.6 1.1 0.0097 15.6 1.1 4.3 5 1 1 7 7 7 1 Cytochrome oxidase maturation protein cbb3-type HEAT_2 PF13646.6 gi|313117041|ref|YP_004038165.1| - 3.6e-22 78.6 22.8 1.8e-12 47.5 6.4 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|313117041|ref|YP_004038165.1| - 7.9e-10 38.1 11.8 0.001 19.1 0.0 6.0 6 0 0 6 6 6 2 HEAT repeat Cnd1 PF12717.7 gi|313117041|ref|YP_004038165.1| - 0.00033 20.7 0.1 3.5 7.6 0.0 3.9 1 1 3 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.16 gi|313117041|ref|YP_004038165.1| - 0.0037 17.8 16.6 1.2 10.0 0.1 5.6 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|313117041|ref|YP_004038165.1| - 0.0078 16.7 15.6 0.14 12.7 0.1 4.7 4 2 1 5 5 5 3 HEAT-like repeat DUF2019 PF09450.10 gi|313117041|ref|YP_004038165.1| - 0.025 14.5 0.3 0.066 13.2 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2019) Vac14_Fab1_bd PF12755.7 gi|313117041|ref|YP_004038165.1| - 0.06 13.9 0.0 7.9 7.2 0.0 2.7 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region ParA PF10609.9 gi|313117042|ref|YP_004038166.1| - 9.5e-63 211.9 0.0 1.3e-62 211.4 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|313117042|ref|YP_004038166.1| - 7.3e-17 61.0 0.1 1.9e-16 59.7 0.1 1.8 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) FeS_assembly_P PF01883.19 gi|313117042|ref|YP_004038166.1| - 1.5e-11 44.3 8.3 3.5e-11 43.1 4.3 2.6 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|313117042|ref|YP_004038166.1| - 1.3e-10 41.4 0.0 3.1e-10 40.2 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|313117042|ref|YP_004038166.1| - 2.1e-05 24.4 0.2 0.0053 16.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|313117042|ref|YP_004038166.1| - 5.9e-05 23.1 0.2 0.00025 21.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|313117042|ref|YP_004038166.1| - 0.00037 19.8 1.7 0.26 10.5 1.6 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 gi|313117042|ref|YP_004038166.1| - 0.0056 16.0 0.1 0.01 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|313117042|ref|YP_004038166.1| - 0.006 16.2 6.0 0.099 12.2 0.4 2.4 2 0 0 2 2 2 2 AAA domain MFS_1 PF07690.16 gi|313117043|ref|YP_004038167.1| - 1.1e-38 133.1 50.3 1.1e-35 123.3 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313117043|ref|YP_004038167.1| - 2.6e-08 33.1 16.8 4.9e-06 25.7 15.9 2.6 1 1 1 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|313117043|ref|YP_004038167.1| - 2.9e-05 23.0 10.0 0.00023 20.1 2.9 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|313117043|ref|YP_004038167.1| - 0.035 12.5 22.1 0.099 11.0 15.1 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector GFO_IDH_MocA PF01408.22 gi|313117044|ref|YP_004038168.1| - 6.5e-21 75.4 0.0 1e-20 74.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313117044|ref|YP_004038168.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain BPD_transp_1 PF00528.22 gi|313117045|ref|YP_004038169.1| - 2e-31 109.1 7.1 2e-31 109.1 7.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313117045|ref|YP_004038169.1| - 0.0013 18.7 1.1 0.0013 18.7 1.1 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|313117046|ref|YP_004038170.1| - 4.1e-40 137.5 7.3 4.1e-40 137.5 7.3 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|313117047|ref|YP_004038171.1| - 3.4e-64 215.4 0.0 1.1e-30 107.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|313117047|ref|YP_004038171.1| - 8.5e-36 122.3 0.6 8.6e-17 61.4 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117047|ref|YP_004038171.1| - 1e-17 64.9 8.3 5.2e-09 36.3 0.2 4.1 2 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313117047|ref|YP_004038171.1| - 5e-17 62.1 0.2 8.3e-08 31.9 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313117047|ref|YP_004038171.1| - 5.4e-09 36.7 0.1 0.0012 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|313117047|ref|YP_004038171.1| - 3.8e-07 29.8 0.7 0.021 14.5 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|313117047|ref|YP_004038171.1| - 5e-06 26.5 1.0 0.55 10.1 0.1 3.5 3 0 0 3 3 3 2 NACHT domain RsgA_GTPase PF03193.16 gi|313117047|ref|YP_004038171.1| - 6.3e-06 26.2 0.6 0.027 14.4 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase IstB_IS21 PF01695.17 gi|313117047|ref|YP_004038171.1| - 1e-05 25.4 1.2 0.96 9.2 0.0 3.8 4 0 0 4 4 4 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|313117047|ref|YP_004038171.1| - 1.2e-05 25.6 5.3 0.1 12.9 0.2 3.9 2 2 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|313117047|ref|YP_004038171.1| - 1.4e-05 25.2 0.1 1.1 9.6 0.0 3.9 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313117047|ref|YP_004038171.1| - 4.2e-05 23.2 0.2 0.21 11.1 0.0 3.6 4 0 0 4 4 4 1 AAA domain DUF87 PF01935.17 gi|313117047|ref|YP_004038171.1| - 6e-05 23.2 0.9 0.26 11.4 0.2 2.6 2 0 0 2 2 2 2 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|313117047|ref|YP_004038171.1| - 0.0002 21.1 0.0 0.038 13.7 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|313117047|ref|YP_004038171.1| - 0.00066 19.5 0.1 0.19 11.4 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|313117047|ref|YP_004038171.1| - 0.0012 18.3 0.2 1.2 8.5 0.0 3.4 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|313117047|ref|YP_004038171.1| - 0.0019 17.4 1.0 1.3 8.1 0.1 2.7 3 0 0 3 3 2 2 NB-ARC domain Sigma54_activat PF00158.26 gi|313117047|ref|YP_004038171.1| - 0.0026 17.5 2.1 4.2 7.0 0.0 3.6 4 0 0 4 4 4 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|313117047|ref|YP_004038171.1| - 0.0044 17.4 0.3 4.5 7.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.14 gi|313117047|ref|YP_004038171.1| - 0.0051 16.8 1.8 3.4 7.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|313117047|ref|YP_004038171.1| - 0.0066 16.6 0.1 1.5 9.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|313117047|ref|YP_004038171.1| - 0.0069 16.8 0.1 6.2 7.3 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|313117047|ref|YP_004038171.1| - 0.0078 16.3 0.3 0.24 11.4 0.2 2.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|313117047|ref|YP_004038171.1| - 0.0099 16.0 1.0 2.9 8.0 0.1 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|313117047|ref|YP_004038171.1| - 0.01 16.4 0.0 7.8 7.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313117047|ref|YP_004038171.1| - 0.011 16.2 0.0 2.5 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|313117047|ref|YP_004038171.1| - 0.011 14.4 1.0 1.6 7.3 0.0 3.3 4 0 0 4 4 4 0 AAA domain Zeta_toxin PF06414.12 gi|313117047|ref|YP_004038171.1| - 0.012 14.9 0.4 2.5 7.3 0.1 2.7 3 0 0 3 3 3 0 Zeta toxin AAA_24 PF13479.6 gi|313117047|ref|YP_004038171.1| - 0.012 15.3 0.2 2.1 8.0 0.1 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|313117047|ref|YP_004038171.1| - 0.016 15.1 1.7 0.31 10.9 0.1 2.6 3 0 0 3 3 2 0 NTPase ATPase PF06745.13 gi|313117047|ref|YP_004038171.1| - 0.018 14.4 0.2 6.6 6.0 0.0 2.4 2 0 0 2 2 2 0 KaiC MobB PF03205.14 gi|313117047|ref|YP_004038171.1| - 0.026 14.4 0.3 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.18 gi|313117047|ref|YP_004038171.1| - 0.035 13.4 0.2 1.9 7.7 0.0 2.3 2 0 0 2 2 2 0 Septin TniB PF05621.11 gi|313117047|ref|YP_004038171.1| - 0.039 13.4 0.4 5.6 6.3 0.0 3.5 4 0 0 4 4 4 0 Bacterial TniB protein AAA_15 PF13175.6 gi|313117047|ref|YP_004038171.1| - 0.041 13.6 1.1 8.8 5.9 0.1 2.9 3 0 0 3 3 3 0 AAA ATPase domain APS_kinase PF01583.20 gi|313117047|ref|YP_004038171.1| - 0.047 13.6 0.8 0.58 10.0 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|313117047|ref|YP_004038171.1| - 0.062 12.8 0.1 5.4 6.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region tRNA_lig_kinase PF08303.11 gi|313117047|ref|YP_004038171.1| - 0.071 13.2 0.0 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 tRNA ligase kinase domain TIP49 PF06068.13 gi|313117047|ref|YP_004038171.1| - 0.082 12.1 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Methyltransf_32 PF13679.6 gi|313117047|ref|YP_004038171.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain GTP_EFTU PF00009.27 gi|313117047|ref|YP_004038171.1| - 0.14 11.7 0.1 3 7.3 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TsaE PF02367.17 gi|313117047|ref|YP_004038171.1| - 0.19 11.7 0.2 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Hpr_kinase_C PF07475.12 gi|313117047|ref|YP_004038171.1| - 0.21 11.1 0.8 16 5.0 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Roc PF08477.13 gi|313117047|ref|YP_004038171.1| - 0.25 11.6 0.3 13 6.1 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase CLP1_P PF16575.5 gi|313117047|ref|YP_004038171.1| - 0.48 10.2 2.4 16 5.2 0.2 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SBP_bac_5 PF00496.22 gi|313117048|ref|YP_004038172.1| - 5.2e-75 252.8 0.3 7e-75 252.3 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3320 PF11784.8 gi|313117048|ref|YP_004038172.1| - 0.047 13.7 0.2 7.2 6.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) IclR PF01614.18 gi|313117049|ref|YP_004038173.1| - 1.1e-30 106.1 0.0 1.6e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117049|ref|YP_004038173.1| - 9.1e-09 35.0 0.0 2.6e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117049|ref|YP_004038173.1| - 9.4e-08 31.8 0.0 3.3e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117049|ref|YP_004038173.1| - 8.3e-07 29.0 0.0 2e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313117049|ref|YP_004038173.1| - 4.7e-06 26.1 0.0 2e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117049|ref|YP_004038173.1| - 9.6e-06 25.4 0.0 2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117049|ref|YP_004038173.1| - 1.3e-05 25.0 0.0 9.5e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313117049|ref|YP_004038173.1| - 4.4e-05 23.3 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117049|ref|YP_004038173.1| - 6.8e-05 22.7 0.0 0.00027 20.8 0.0 2.1 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|313117049|ref|YP_004038173.1| - 0.009 16.2 0.0 0.024 14.8 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|313117049|ref|YP_004038173.1| - 0.016 15.0 0.0 0.052 13.4 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_17 PF12728.7 gi|313117049|ref|YP_004038173.1| - 0.017 15.3 0.0 0.21 11.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|313117049|ref|YP_004038173.1| - 0.028 14.5 0.0 0.077 13.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|313117049|ref|YP_004038173.1| - 0.059 13.2 0.1 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_40 PF14493.6 gi|313117049|ref|YP_004038173.1| - 0.077 13.5 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|313117049|ref|YP_004038173.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|313117049|ref|YP_004038173.1| - 0.19 11.6 0.0 0.6 10.0 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DAO PF01266.24 gi|313117050|ref|YP_004038174.1| - 3.1e-46 158.6 0.1 3.4e-46 158.4 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313117050|ref|YP_004038174.1| - 0.0035 16.1 0.0 0.14 10.8 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|313117050|ref|YP_004038174.1| - 0.02 14.1 0.3 0.8 8.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|313117050|ref|YP_004038174.1| - 0.029 13.6 0.5 0.39 9.9 0.5 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|313117050|ref|YP_004038174.1| - 0.47 10.4 5.1 0.63 10.0 1.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|313117050|ref|YP_004038174.1| - 2.7 8.3 4.3 2.1 8.6 0.2 2.9 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain TPP_enzyme_M PF00205.22 gi|313117051|ref|YP_004038175.1| - 1.5e-34 118.6 0.6 2.9e-34 117.8 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|313117051|ref|YP_004038175.1| - 1.5e-32 112.5 1.4 2.7e-32 111.7 0.9 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|313117051|ref|YP_004038175.1| - 2.2e-29 102.3 0.0 6.7e-28 97.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO_dh PF02552.16 gi|313117051|ref|YP_004038175.1| - 0.25 11.1 0.0 0.45 10.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Epimerase PF01370.21 gi|313117052|ref|YP_004038176.1| - 1.6e-41 142.4 0.3 2e-41 142.0 0.3 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313117052|ref|YP_004038176.1| - 1.7e-40 139.4 0.2 5.7e-39 134.4 0.2 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|313117052|ref|YP_004038176.1| - 9.9e-22 77.2 0.0 1.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313117052|ref|YP_004038176.1| - 5.3e-16 58.5 1.4 7.1e-16 58.1 1.4 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|313117052|ref|YP_004038176.1| - 1.9e-12 47.0 0.0 9.1e-11 41.4 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313117052|ref|YP_004038176.1| - 1.6e-10 41.1 0.2 2.6e-10 40.5 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|313117052|ref|YP_004038176.1| - 3.1e-08 33.1 1.1 1.1e-05 24.8 1.1 2.3 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|313117052|ref|YP_004038176.1| - 2.1e-07 31.0 0.2 5.2e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 KR domain adh_short PF00106.25 gi|313117052|ref|YP_004038176.1| - 3.3e-07 30.0 0.6 3.3e-07 30.0 0.6 1.7 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313117052|ref|YP_004038176.1| - 8.3e-05 22.3 0.3 0.00017 21.3 0.3 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|313117052|ref|YP_004038176.1| - 0.00017 21.2 0.4 0.0003 20.4 0.4 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|313117052|ref|YP_004038176.1| - 0.054 12.9 0.1 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCB2_CCB4 PF11152.8 gi|313117052|ref|YP_004038176.1| - 0.18 11.1 0.1 0.31 10.3 0.1 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 HD PF01966.22 gi|313117053|ref|YP_004038177.1| - 7.1e-10 39.2 0.3 1.2e-09 38.5 0.3 1.3 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|313117053|ref|YP_004038177.1| - 0.015 15.4 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 HD domain HD_2 PF12917.7 gi|313117053|ref|YP_004038177.1| - 0.16 11.7 0.1 0.38 10.5 0.1 1.6 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme EthD PF07110.11 gi|313117054|ref|YP_004038178.1| - 6.5e-24 84.9 11.0 2e-12 48.1 0.7 3.9 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|313117054|ref|YP_004038178.1| - 1.8e-23 83.2 5.5 1.8e-12 47.7 0.6 3.8 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase DUF4543 PF15076.6 gi|313117054|ref|YP_004038178.1| - 0.0097 16.0 0.6 0.42 10.8 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4543) FOXP-CC PF16159.5 gi|313117054|ref|YP_004038178.1| - 0.022 15.4 0.3 9.4 6.9 0.1 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain ABM PF03992.16 gi|313117054|ref|YP_004038178.1| - 0.049 13.8 0.4 13 6.0 0.1 2.9 2 2 1 3 3 3 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.24 gi|313117055|ref|YP_004038179.1| - 1.9e-29 102.8 0.1 2.8e-29 102.3 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313117055|ref|YP_004038179.1| - 0.00034 21.3 0.0 0.00066 20.3 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Bac_luciferase PF00296.20 gi|313117056|ref|YP_004038180.1| - 1.3e-53 182.5 0.0 1.5e-53 182.2 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Trehalase_Ca-bi PF07492.11 gi|313117056|ref|YP_004038180.1| - 0.11 12.2 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain Transket_pyr PF02779.24 gi|313117057|ref|YP_004038181.1| - 2.8e-48 164.0 0.0 4.1e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|313117057|ref|YP_004038181.1| - 1.3e-34 118.7 0.0 2.3e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|313117057|ref|YP_004038181.1| - 0.055 13.8 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|313117058|ref|YP_004038182.1| - 1.1e-82 277.4 0.0 1.4e-82 277.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|313117058|ref|YP_004038182.1| - 8.9e-07 28.4 0.0 1.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|313117058|ref|YP_004038182.1| - 4.1e-05 23.4 0.3 0.00023 21.0 0.3 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|313117058|ref|YP_004038182.1| - 0.00014 20.9 0.1 0.00025 20.1 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain SNF PF00209.18 gi|313117059|ref|YP_004038183.1| - 3.9e-49 167.7 27.4 4.9e-25 88.2 9.0 2.3 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|313117059|ref|YP_004038183.1| - 3 8.2 6.8 0.66 10.3 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) Aminotran_1_2 PF00155.21 gi|313117060|ref|YP_004038184.1| - 8.7e-59 199.5 0.0 9.8e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313117060|ref|YP_004038184.1| - 1.8e-13 50.5 0.0 2.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|313117060|ref|YP_004038184.1| - 7.6e-08 31.7 0.0 1.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|313117060|ref|YP_004038184.1| - 5.9e-06 25.8 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313117060|ref|YP_004038184.1| - 0.00036 19.2 0.0 0.00052 18.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HTH_24 PF13412.6 gi|313117061|ref|YP_004038185.1| - 2e-05 24.1 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117061|ref|YP_004038185.1| - 9.9e-05 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313117061|ref|YP_004038185.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|313117061|ref|YP_004038185.1| - 0.0027 18.2 0.1 0.004 17.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|313117061|ref|YP_004038185.1| - 0.0066 16.3 0.3 0.013 15.3 0.3 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|313117061|ref|YP_004038185.1| - 0.0091 15.9 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_54 PF18607.1 gi|313117061|ref|YP_004038185.1| - 0.057 13.5 0.0 0.071 13.2 0.0 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain GntR PF00392.21 gi|313117061|ref|YP_004038185.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.12 gi|313117061|ref|YP_004038185.1| - 0.068 13.3 0.0 0.077 13.2 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|313117061|ref|YP_004038185.1| - 0.07 13.0 0.1 0.097 12.6 0.1 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Aldedh PF00171.22 gi|313117062|ref|YP_004038186.1| - 2.3e-138 461.6 0.0 2.6e-138 461.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.18 gi|313117063|ref|YP_004038187.1| - 4.5e-33 113.8 0.1 9.8e-33 112.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117063|ref|YP_004038187.1| - 1.4e-08 34.4 0.2 3.6e-08 33.1 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313117063|ref|YP_004038187.1| - 2.8e-08 33.2 0.5 1.5e-07 30.9 0.4 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117063|ref|YP_004038187.1| - 1.3e-06 28.1 0.2 3.1e-06 27.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|313117063|ref|YP_004038187.1| - 7e-06 25.9 0.5 4.1e-05 23.4 0.4 2.3 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|313117063|ref|YP_004038187.1| - 1.2e-05 25.3 0.2 1.2e-05 25.3 0.2 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117063|ref|YP_004038187.1| - 6.8e-05 22.7 0.0 0.00025 20.9 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313117063|ref|YP_004038187.1| - 9.8e-05 22.2 0.1 0.00021 21.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|313117063|ref|YP_004038187.1| - 0.0032 17.2 0.1 0.0078 15.9 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313117063|ref|YP_004038187.1| - 0.012 15.4 0.6 0.067 13.0 0.2 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|313117063|ref|YP_004038187.1| - 0.051 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|313117063|ref|YP_004038187.1| - 0.054 13.6 0.3 0.054 13.6 0.3 2.4 3 0 0 3 3 3 0 DprA winged helix domain HTH_32 PF13565.6 gi|313117063|ref|YP_004038187.1| - 0.06 14.0 1.9 0.077 13.6 0.2 2.1 2 1 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|313117063|ref|YP_004038187.1| - 0.069 13.0 0.0 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain F420_oxidored PF03807.17 gi|313117064|ref|YP_004038188.1| - 2.5e-17 63.3 0.5 5.2e-17 62.2 0.3 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|313117064|ref|YP_004038188.1| - 0.00027 21.0 0.1 0.00072 19.6 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|313117064|ref|YP_004038188.1| - 0.00067 19.3 0.0 0.00099 18.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|313117064|ref|YP_004038188.1| - 0.00074 18.6 0.0 0.00091 18.3 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|313117064|ref|YP_004038188.1| - 0.0056 17.1 0.1 0.01 16.2 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|313117064|ref|YP_004038188.1| - 0.051 13.6 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|313117064|ref|YP_004038188.1| - 0.11 12.3 0.1 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 KR domain zf-FCS PF06467.14 gi|313117065|ref|YP_004038189.1| - 0.13 12.2 7.2 0.32 11.0 7.2 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|313117065|ref|YP_004038189.1| - 3 8.3 9.3 24 5.4 9.3 2.3 1 1 0 1 1 1 0 Archaeal TRASH domain IMPDH PF00478.25 gi|313117067|ref|YP_004038191.1| - 1.4e-120 402.5 3.4 1.6e-120 402.2 3.4 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|313117067|ref|YP_004038191.1| - 4.3e-08 32.9 0.7 5.4e-05 22.8 0.1 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.18 gi|313117067|ref|YP_004038191.1| - 1.6e-06 27.4 11.2 4.9e-06 25.8 11.2 1.8 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|313117067|ref|YP_004038191.1| - 9.3e-05 22.0 12.5 0.016 14.6 8.5 2.5 1 1 2 3 3 3 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|313117067|ref|YP_004038191.1| - 0.0006 19.0 4.3 0.0019 17.4 4.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|313117067|ref|YP_004038191.1| - 0.0048 16.2 2.5 0.017 14.5 1.9 2.0 1 1 1 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|313117067|ref|YP_004038191.1| - 0.0059 15.9 1.0 0.012 14.8 1.0 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF1269 PF06897.12 gi|313117067|ref|YP_004038191.1| - 0.05 13.9 0.5 0.22 11.9 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Dus PF01207.17 gi|313117067|ref|YP_004038191.1| - 0.073 12.2 0.2 0.19 10.8 0.1 1.5 1 1 1 2 2 2 0 Dihydrouridine synthase (Dus) Aldolase PF01081.19 gi|313117067|ref|YP_004038191.1| - 0.089 12.2 3.1 0.12 11.8 0.7 2.0 1 1 1 2 2 2 0 KDPG and KHG aldolase ThiG PF05690.14 gi|313117067|ref|YP_004038191.1| - 0.42 9.9 6.0 0.067 12.5 1.0 1.9 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DAO PF01266.24 gi|313117068|ref|YP_004038192.1| - 2.8e-66 224.5 0.1 3.5e-66 224.2 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313117068|ref|YP_004038192.1| - 3.9e-08 32.9 0.0 0.0069 15.6 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313117068|ref|YP_004038192.1| - 7.6e-08 32.0 0.7 0.00034 20.0 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313117068|ref|YP_004038192.1| - 3.3e-07 29.3 0.2 0.0011 17.8 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|313117068|ref|YP_004038192.1| - 9.4e-06 25.7 0.7 0.0025 17.8 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|313117068|ref|YP_004038192.1| - 3.7e-05 23.9 0.0 0.00011 22.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Mqo PF06039.15 gi|313117068|ref|YP_004038192.1| - 4.1e-05 22.3 0.0 0.16 10.5 0.0 2.2 2 0 0 2 2 2 2 Malate:quinone oxidoreductase (Mqo) Pyr_redox PF00070.27 gi|313117068|ref|YP_004038192.1| - 0.0004 20.9 0.1 0.29 11.7 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313117068|ref|YP_004038192.1| - 0.00042 19.6 0.0 0.0011 18.2 0.0 1.7 1 0 0 1 1 1 1 Thi4 family K_oxygenase PF13434.6 gi|313117068|ref|YP_004038192.1| - 0.0019 17.4 0.3 0.082 12.0 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|313117068|ref|YP_004038192.1| - 0.0043 17.5 0.0 0.012 16.0 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|313117068|ref|YP_004038192.1| - 0.0067 15.5 0.5 0.4 9.7 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|313117068|ref|YP_004038192.1| - 0.0073 15.4 0.7 0.027 13.6 0.7 1.8 1 1 0 1 1 1 1 FAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|313117069|ref|YP_004038193.1| - 1.4e-30 106.5 1.5 2.1e-30 105.9 1.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313117069|ref|YP_004038193.1| - 3.6e-26 92.0 0.0 8.5e-26 90.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313117069|ref|YP_004038193.1| - 2e-24 85.6 0.0 3.7e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313117069|ref|YP_004038193.1| - 5e-11 43.0 1.0 7.6e-11 42.4 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AcetylCoA_hyd_C PF13336.6 gi|313117070|ref|YP_004038194.1| - 2.5e-39 134.7 0.0 3.5e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|313117070|ref|YP_004038194.1| - 3.3e-10 40.3 0.0 7e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.12 gi|313117070|ref|YP_004038194.1| - 8.5e-05 21.6 0.3 0.0002 20.4 0.3 1.6 1 1 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.23 gi|313117070|ref|YP_004038194.1| - 0.00051 19.5 0.1 0.0012 18.3 0.0 1.6 2 0 0 2 2 2 1 Coenzyme A transferase DUF2204 PF09970.9 gi|313117070|ref|YP_004038194.1| - 0.048 13.3 0.1 0.26 10.9 0.1 2.0 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) DctM PF06808.12 gi|313117072|ref|YP_004038196.1| - 7e-53 179.9 46.6 7e-53 179.9 46.6 1.9 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|313117073|ref|YP_004038197.1| - 5e-21 75.4 0.3 6.5e-21 75.0 0.3 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|313117073|ref|YP_004038197.1| - 0.0026 17.8 0.0 0.0079 16.2 0.0 1.7 1 1 1 2 2 2 1 NMT1/THI5 like UCR_Fe-S_N PF10399.9 gi|313117073|ref|YP_004038197.1| - 0.28 10.6 0.1 0.28 10.6 0.1 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IclR PF01614.18 gi|313117074|ref|YP_004038198.1| - 1.3e-32 112.3 0.0 3.8e-32 110.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117074|ref|YP_004038198.1| - 8.6e-11 41.5 0.1 3e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313117074|ref|YP_004038198.1| - 9.8e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117074|ref|YP_004038198.1| - 4.1e-07 29.7 0.1 9.7e-07 28.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117074|ref|YP_004038198.1| - 9.7e-07 28.8 0.0 2.8e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117074|ref|YP_004038198.1| - 0.00025 20.9 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117074|ref|YP_004038198.1| - 0.00036 20.4 0.0 0.00086 19.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|313117074|ref|YP_004038198.1| - 0.00066 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117074|ref|YP_004038198.1| - 0.0018 18.1 0.1 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|313117074|ref|YP_004038198.1| - 0.0039 16.9 0.1 0.016 15.0 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|313117074|ref|YP_004038198.1| - 0.0093 16.1 0.0 0.056 13.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|313117074|ref|YP_004038198.1| - 0.015 15.0 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|313117074|ref|YP_004038198.1| - 0.068 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|313117074|ref|YP_004038198.1| - 0.086 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family EF1_GNE PF00736.19 gi|313117074|ref|YP_004038198.1| - 0.11 12.6 0.0 0.41 10.8 0.0 2.0 1 1 1 2 2 2 0 EF-1 guanine nucleotide exchange domain HTH_29 PF13551.6 gi|313117074|ref|YP_004038198.1| - 0.13 12.3 0.0 0.37 10.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|313117074|ref|YP_004038198.1| - 0.14 12.6 0.1 1.1 9.7 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Syntaxin PF00804.25 gi|313117074|ref|YP_004038198.1| - 0.19 11.4 0.2 0.42 10.2 0.2 1.5 1 0 0 1 1 1 0 Syntaxin HTH_20 PF12840.7 gi|313117075|ref|YP_004038199.1| - 1.9e-12 47.0 0.1 3.8e-12 46.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117075|ref|YP_004038199.1| - 2.2e-05 24.2 0.0 4.7e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313117075|ref|YP_004038199.1| - 0.00084 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117075|ref|YP_004038199.1| - 0.03 14.2 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UPF0444 PF15475.6 gi|313117075|ref|YP_004038199.1| - 0.063 13.5 0.2 0.063 13.5 0.2 1.9 2 0 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 MarR PF01047.22 gi|313117077|ref|YP_004038201.1| - 5.3e-08 32.7 0.0 8.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|313117077|ref|YP_004038201.1| - 1.7e-07 31.0 0.2 3.5e-07 30.0 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117077|ref|YP_004038201.1| - 7.4e-07 29.0 0.3 1.2e-06 28.3 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313117077|ref|YP_004038201.1| - 3e-06 26.9 0.2 4.9e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Trp_oprn_chp PF09534.10 gi|313117077|ref|YP_004038201.1| - 2e-05 24.5 1.0 4e-05 23.5 1.1 1.5 1 1 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_24 PF13412.6 gi|313117077|ref|YP_004038201.1| - 2.9e-05 23.5 0.0 5.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313117077|ref|YP_004038201.1| - 0.0004 20.4 0.2 0.00069 19.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117077|ref|YP_004038201.1| - 0.0012 19.3 0.2 0.0032 17.9 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|313117077|ref|YP_004038201.1| - 0.0014 18.8 0.1 0.0023 18.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|313117077|ref|YP_004038201.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313117077|ref|YP_004038201.1| - 0.0029 17.2 0.3 0.0049 16.5 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|313117077|ref|YP_004038201.1| - 0.0036 17.0 0.5 0.0074 16.0 0.1 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313117077|ref|YP_004038201.1| - 0.0078 16.2 0.2 0.013 15.5 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain SfLAP PF11139.8 gi|313117077|ref|YP_004038201.1| - 0.0095 15.4 1.1 0.016 14.6 1.1 1.3 1 0 0 1 1 1 1 Sap, sulfolipid-1-addressing protein HTH_11 PF08279.12 gi|313117077|ref|YP_004038201.1| - 0.011 15.6 0.2 0.028 14.4 0.1 1.6 2 0 0 2 2 2 0 HTH domain RepL PF05732.11 gi|313117077|ref|YP_004038201.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|313117077|ref|YP_004038201.1| - 0.026 14.4 0.1 0.054 13.3 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Trp_repressor PF01371.19 gi|313117077|ref|YP_004038201.1| - 0.043 13.9 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein DUF2809 PF10990.8 gi|313117077|ref|YP_004038201.1| - 0.069 13.8 0.2 0.11 13.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) Penicillinase_R PF03965.16 gi|313117077|ref|YP_004038201.1| - 0.075 13.4 0.3 0.19 12.1 0.3 1.7 1 1 0 1 1 1 0 Penicillinase repressor DDE_Tnp_1_assoc PF13808.6 gi|313117077|ref|YP_004038201.1| - 0.16 12.0 2.5 4.1 7.5 0.0 2.9 3 1 0 3 3 3 0 DDE_Tnp_1-associated 3HCDH_N PF02737.18 gi|313117079|ref|YP_004038203.1| - 3.2e-62 209.6 0.0 5.6e-62 208.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|313117079|ref|YP_004038203.1| - 1.2e-54 185.2 0.0 1.8e-54 184.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|313117079|ref|YP_004038203.1| - 9.4e-45 151.2 0.4 8.7e-22 77.6 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|313117079|ref|YP_004038203.1| - 6.7e-31 108.0 0.0 5e-27 95.3 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|313117079|ref|YP_004038203.1| - 0.0061 16.8 0.1 0.017 15.3 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|313117079|ref|YP_004038203.1| - 0.15 11.3 0.3 0.24 10.7 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SCP2 PF02036.17 gi|313117080|ref|YP_004038204.1| - 1.1e-07 32.3 0.0 1.2e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.16 gi|313117080|ref|YP_004038204.1| - 0.86 10.1 5.2 4.2 7.9 0.2 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_N PF08240.12 gi|313117081|ref|YP_004038205.1| - 1.6e-25 89.1 0.1 3.5e-25 88.0 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313117081|ref|YP_004038205.1| - 1.2e-24 86.7 0.0 1.8e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|313117081|ref|YP_004038205.1| - 9.5e-05 23.5 0.0 0.00022 22.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|313117081|ref|YP_004038205.1| - 0.0001 21.7 0.6 0.00015 21.1 0.6 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|313117081|ref|YP_004038205.1| - 0.0011 18.5 0.5 0.0017 17.9 0.5 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|313117081|ref|YP_004038205.1| - 0.02 15.1 0.3 0.033 14.4 0.3 1.3 1 0 0 1 1 1 0 TrkA-N domain Urocanase PF01175.18 gi|313117081|ref|YP_004038205.1| - 0.054 13.1 0.2 0.083 12.5 0.2 1.2 1 0 0 1 1 1 0 Urocanase Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|313117081|ref|YP_004038205.1| - 0.091 12.1 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|313117081|ref|YP_004038205.1| - 0.13 13.0 0.1 0.24 12.1 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain SIS_2 PF13580.6 gi|313117081|ref|YP_004038205.1| - 0.14 12.2 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 SIS domain Aldedh PF00171.22 gi|313117082|ref|YP_004038206.1| - 6.3e-158 526.1 0.0 7.2e-158 525.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|313117082|ref|YP_004038206.1| - 0.00014 21.4 0.0 0.0051 16.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) Invasin_D3 PF09134.10 gi|313117082|ref|YP_004038206.1| - 0.0028 17.9 1.8 0.0067 16.7 1.8 1.6 1 0 0 1 1 1 1 Invasin, domain 3 DUF5063 PF16702.5 gi|313117082|ref|YP_004038206.1| - 0.12 12.7 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) DUF349 PF03993.12 gi|313117082|ref|YP_004038206.1| - 0.14 12.5 1.8 0.27 11.5 1.8 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) MFS_1 PF07690.16 gi|313117083|ref|YP_004038207.1| - 7.5e-38 130.3 63.1 4.6e-30 104.7 38.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|313117083|ref|YP_004038207.1| - 8.2e-06 24.9 7.9 8.2e-06 24.9 7.9 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Alkyl_sulf_dimr PF14863.6 gi|313117084|ref|YP_004038208.1| - 1.8e-25 90.0 0.1 3.2e-25 89.2 0.1 1.4 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|313117084|ref|YP_004038208.1| - 1.2e-21 77.6 2.4 1.2e-21 77.6 2.4 1.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313117084|ref|YP_004038208.1| - 6.5e-06 25.8 0.1 1.6e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3708 PF12501.8 gi|313117084|ref|YP_004038208.1| - 0.16 11.8 0.1 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 Phosphate ATP-binding cassette transporter HTH_10 PF04967.12 gi|313117085|ref|YP_004038209.1| - 5e-16 58.2 0.0 7.7e-16 57.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|313117085|ref|YP_004038209.1| - 1.2e-05 24.7 0.3 2e-05 24.0 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.6 gi|313117085|ref|YP_004038209.1| - 0.021 14.5 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.12 gi|313117085|ref|YP_004038209.1| - 0.026 14.2 0.5 0.46 10.2 0.2 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 SgrR_N PF12793.7 gi|313117085|ref|YP_004038209.1| - 0.032 14.4 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GtrA PF04138.14 gi|313117086|ref|YP_004038210.1| - 3e-20 72.6 10.7 3.6e-20 72.3 10.7 1.1 1 0 0 1 1 1 1 GtrA-like protein PMT_2 PF13231.6 gi|313117087|ref|YP_004038211.1| - 7e-12 45.9 8.4 2.6e-11 44.0 8.4 1.9 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|313117087|ref|YP_004038211.1| - 1.5e-06 28.0 8.5 2.7e-06 27.2 8.5 1.3 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_18 PF00704.28 gi|313117088|ref|YP_004038212.1| - 8.6e-83 278.6 8.8 1.4e-82 278.0 8.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|313117088|ref|YP_004038212.1| - 6.5e-16 57.9 3.6 1.9e-15 56.5 3.6 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117088|ref|YP_004038212.1| - 2e-05 24.9 1.9 8.5e-05 22.9 1.9 2.2 1 0 0 1 1 1 1 Carbohydrate binding domain ig PF00047.25 gi|313117088|ref|YP_004038212.1| - 0.0022 18.2 0.0 0.028 14.6 0.1 2.4 2 0 0 2 2 2 1 Immunoglobulin domain I-set PF07679.16 gi|313117088|ref|YP_004038212.1| - 0.042 13.9 0.0 0.093 12.8 0.0 1.6 1 0 0 1 1 1 0 Immunoglobulin I-set domain REJ PF02010.15 gi|313117088|ref|YP_004038212.1| - 0.059 12.1 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 REJ domain Glyco_hydro_18 PF00704.28 gi|313117089|ref|YP_004038213.1| - 1.3e-70 238.7 0.9 1.3e-70 238.7 0.9 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|313117089|ref|YP_004038213.1| - 1.5e-19 69.6 4.6 4.4e-19 68.1 4.6 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117089|ref|YP_004038213.1| - 4.9e-06 26.8 1.8 2.5e-05 24.6 1.8 2.3 1 0 0 1 1 1 1 Carbohydrate binding domain Ig_3 PF13927.6 gi|313117089|ref|YP_004038213.1| - 3.5 8.3 5.1 0.73 10.5 0.3 2.4 3 0 0 3 3 3 0 Immunoglobulin domain PKD PF00801.20 gi|313117090|ref|YP_004038214.1| - 3.9e-15 55.4 2.3 8.9e-15 54.3 2.3 1.6 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117090|ref|YP_004038214.1| - 0.00024 21.5 0.9 0.00085 19.8 0.9 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|313117090|ref|YP_004038214.1| - 0.015 15.4 1.3 0.039 14.1 1.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5011) PKD PF00801.20 gi|313117091|ref|YP_004038215.1| - 2.6e-11 43.2 4.3 7.4e-11 41.7 4.3 1.8 1 0 0 1 1 1 1 PKD domain IclR PF01614.18 gi|313117092|ref|YP_004038216.1| - 4.1e-21 75.1 0.1 6.5e-20 71.3 0.0 2.4 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117092|ref|YP_004038216.1| - 7.2e-12 44.9 0.5 3.1e-11 42.9 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117092|ref|YP_004038216.1| - 6.1e-07 29.2 0.0 1.5e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117092|ref|YP_004038216.1| - 8.4e-06 25.8 0.1 2.7e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313117092|ref|YP_004038216.1| - 5.9e-05 22.9 0.0 0.00019 21.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|313117092|ref|YP_004038216.1| - 0.00016 21.5 0.0 0.00048 20.0 0.0 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117092|ref|YP_004038216.1| - 0.0016 18.3 0.0 0.0044 16.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313117092|ref|YP_004038216.1| - 0.0096 15.5 0.0 0.022 14.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|313117092|ref|YP_004038216.1| - 0.035 14.4 0.0 0.087 13.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator His_Phos_1 PF00300.22 gi|313117093|ref|YP_004038217.1| - 1.2e-31 109.9 0.1 1.5e-31 109.6 0.1 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ComA PF02679.15 gi|313117094|ref|YP_004038218.1| - 3e-83 279.0 0.0 3.4e-83 278.8 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) MmgE_PrpD PF03972.14 gi|313117095|ref|YP_004038219.1| - 4.4e-128 427.5 0.6 5.5e-128 427.2 0.6 1.0 1 0 0 1 1 1 1 MmgE/PrpD family MMS19_N PF14500.6 gi|313117095|ref|YP_004038219.1| - 0.022 14.4 0.0 0.054 13.1 0.0 1.6 1 1 0 1 1 1 0 Dos2-interacting transcription regulator of RNA-Pol-II Rib PF08428.10 gi|313117095|ref|YP_004038219.1| - 0.065 13.2 0.4 1.1 9.3 0.1 2.5 2 0 0 2 2 2 0 Rib/alpha-like repeat PheRS_DBD2 PF18554.1 gi|313117095|ref|YP_004038219.1| - 0.27 11.3 1.6 0.37 10.8 0.1 2.0 2 0 0 2 2 2 0 PheRS DNA binding domain 2 Peptidase_M17_N PF02789.17 gi|313117095|ref|YP_004038219.1| - 1 9.2 3.1 2 8.3 1.6 2.2 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain Peripla_BP_2 PF01497.18 gi|313117096|ref|YP_004038220.1| - 2.7e-14 53.3 0.0 4.6e-14 52.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313117096|ref|YP_004038220.1| - 0.0012 18.6 0.6 0.0024 17.6 0.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|313117096|ref|YP_004038220.1| - 1 9.3 6.6 1.7 8.6 6.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) CMD PF02627.20 gi|313117097|ref|YP_004038221.1| - 3.6e-12 46.2 0.4 2.3e-10 40.4 0.1 2.2 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family DDE_Tnp_1 PF01609.21 gi|313117101|ref|YP_004038225.1| - 2.9e-08 33.6 0.0 4.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|313117101|ref|YP_004038225.1| - 0.0037 15.6 0.3 0.016 13.5 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain group 1 DUF772 PF05598.11 gi|313117101|ref|YP_004038225.1| - 0.04 13.9 0.0 0.15 12.1 0.0 2.0 1 1 0 1 1 1 0 Transposase domain (DUF772) RDD PF06271.12 gi|313117102|ref|YP_004038226.1| - 0.027 14.7 3.3 0.032 14.4 3.3 1.0 1 0 0 1 1 1 0 RDD family TadE PF07811.12 gi|313117102|ref|YP_004038226.1| - 0.049 13.9 2.3 0.049 13.9 2.3 1.9 2 0 0 2 2 2 0 TadE-like protein YrhC PF14143.6 gi|313117102|ref|YP_004038226.1| - 0.098 12.8 2.1 0.11 12.6 2.1 1.1 1 0 0 1 1 1 0 YrhC-like protein FixQ PF05545.11 gi|313117102|ref|YP_004038226.1| - 6.3 6.8 6.9 2.2 8.3 1.4 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ H_kinase_N PF12282.8 gi|313117104|ref|YP_004038228.1| - 0.051 13.5 0.0 0.059 13.3 0.0 1.1 1 0 0 1 1 1 0 Signal transduction histidine kinase UvrD-helicase PF00580.21 gi|313117106|ref|YP_004038230.1| - 2.4e-47 162.0 2.6 2.4e-47 162.0 2.6 2.8 2 2 0 2 2 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|313117106|ref|YP_004038230.1| - 1.2e-27 97.0 0.0 1.2e-26 93.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|313117106|ref|YP_004038230.1| - 4.7e-14 52.5 0.0 5.2e-10 39.2 0.0 5.0 2 2 2 4 4 4 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|313117106|ref|YP_004038230.1| - 1.9e-07 31.0 0.0 7.3e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.6 gi|313117106|ref|YP_004038230.1| - 2e-07 30.7 0.2 0.00032 20.5 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain CAMSAP_CC1 PF17095.5 gi|313117106|ref|YP_004038230.1| - 0.021 14.6 0.0 0.15 11.9 0.0 2.4 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin Viral_helicase1 PF01443.18 gi|313117106|ref|YP_004038230.1| - 0.026 14.3 0.1 14 5.3 0.0 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Clusterin PF01093.17 gi|313117106|ref|YP_004038230.1| - 0.75 8.8 10.9 0.042 12.9 0.6 3.0 3 0 0 3 3 3 0 Clusterin Spectrin PF00435.21 gi|313117106|ref|YP_004038230.1| - 2.4 8.7 24.2 2.8 8.5 4.5 5.3 3 2 2 5 5 4 0 Spectrin repeat Peripla_BP_2 PF01497.18 gi|313117106|ref|YP_004038230.1| - 4.8 6.7 6.3 1.2 8.6 0.2 3.0 4 0 0 4 4 4 0 Periplasmic binding protein PilJ PF13675.6 gi|313117106|ref|YP_004038230.1| - 6.5 6.8 6.7 5.7 7.0 0.7 3.7 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4164 PF13747.6 gi|313117106|ref|YP_004038230.1| - 9.5 6.6 16.8 1.7 9.0 2.0 5.2 4 1 1 5 5 4 0 Domain of unknown function (DUF4164) MSA-2c PF12238.8 gi|313117107|ref|YP_004038231.1| - 0.31 11.0 4.0 0.46 10.5 4.0 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c bPH_2 PF03703.14 gi|313117108|ref|YP_004038232.1| - 7.7e-10 38.8 0.9 1.2e-09 38.2 0.9 1.4 1 0 0 1 1 1 1 Bacterial PH domain PalH PF08733.10 gi|313117108|ref|YP_004038232.1| - 0.022 13.8 0.1 0.029 13.4 0.1 1.1 1 0 0 1 1 1 0 PalH/RIM21 S1FA PF04689.13 gi|313117108|ref|YP_004038232.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA binding protein S1FA zf-dskA_traR PF01258.17 gi|313117109|ref|YP_004038233.1| - 0.037 14.0 3.6 0.47 10.4 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2116 PF09889.9 gi|313117109|ref|YP_004038233.1| - 0.17 11.9 5.2 0.11 12.4 1.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|313117109|ref|YP_004038233.1| - 0.56 10.3 5.5 9.8 6.3 1.0 2.5 2 1 0 2 2 2 0 Double zinc ribbon Helicase_C_2 PF13307.6 gi|313117110|ref|YP_004038234.1| - 9.2e-29 100.8 0.0 1.8e-28 99.8 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|313117110|ref|YP_004038234.1| - 4.8e-11 42.6 0.0 4.4e-10 39.5 0.0 2.1 2 0 0 2 2 2 1 DEAD_2 PhoH PF02562.16 gi|313117110|ref|YP_004038234.1| - 0.017 14.6 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|313117110|ref|YP_004038234.1| - 0.022 14.8 0.0 0.077 13.0 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|313117111|ref|YP_004038235.1| - 8.9e-31 107.0 0.0 1.6e-30 106.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313117111|ref|YP_004038235.1| - 1.7e-08 34.1 0.1 4.4e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|313117111|ref|YP_004038235.1| - 2.5e-06 27.6 0.0 5.6e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|313117111|ref|YP_004038235.1| - 7.9e-05 22.8 0.0 0.0002 21.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|313117111|ref|YP_004038235.1| - 0.00012 22.5 1.1 0.00054 20.4 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 gi|313117111|ref|YP_004038235.1| - 0.00044 19.6 0.0 0.0028 16.9 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain DUF2075 PF09848.9 gi|313117111|ref|YP_004038235.1| - 0.0011 18.3 0.2 0.14 11.3 0.0 2.4 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|313117111|ref|YP_004038235.1| - 0.0014 18.8 0.0 0.0025 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|313117111|ref|YP_004038235.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|313117111|ref|YP_004038235.1| - 0.0015 18.8 0.0 0.058 13.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|313117111|ref|YP_004038235.1| - 0.0087 15.8 0.0 0.038 13.7 0.0 1.9 1 1 1 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313117111|ref|YP_004038235.1| - 0.014 14.6 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|313117111|ref|YP_004038235.1| - 0.019 14.3 0.0 0.04 13.3 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|313117111|ref|YP_004038235.1| - 0.023 13.8 0.0 0.047 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|313117111|ref|YP_004038235.1| - 0.025 14.4 2.6 0.042 13.6 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|313117111|ref|YP_004038235.1| - 0.028 14.9 0.8 0.72 10.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|313117111|ref|YP_004038235.1| - 0.029 14.9 0.1 0.083 13.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter AAA_14 PF13173.6 gi|313117111|ref|YP_004038235.1| - 0.04 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|313117111|ref|YP_004038235.1| - 0.042 13.8 0.0 0.097 12.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|313117111|ref|YP_004038235.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|313117111|ref|YP_004038235.1| - 0.058 13.6 0.0 4.8 7.4 0.0 2.6 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|313117111|ref|YP_004038235.1| - 0.059 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|313117111|ref|YP_004038235.1| - 0.065 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|313117111|ref|YP_004038235.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain SKI PF01202.22 gi|313117111|ref|YP_004038235.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase AAA_7 PF12775.7 gi|313117111|ref|YP_004038235.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ADP_ribosyl_GH PF03747.14 gi|313117112|ref|YP_004038236.1| - 2.2e-66 224.6 2.3 3.7e-66 223.8 2.3 1.3 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase SurE PF01975.17 gi|313117112|ref|YP_004038236.1| - 0.11 12.3 0.3 0.21 11.3 0.3 1.5 1 1 0 1 1 1 0 Survival protein SurE DUF4177 PF13783.6 gi|313117113|ref|YP_004038237.1| - 4.6e-05 23.6 0.0 6.8e-05 23.1 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) RVT_3 PF13456.6 gi|313117114|ref|YP_004038238.1| - 6.8e-09 35.6 0.0 8.8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|313117114|ref|YP_004038238.1| - 2.6e-07 30.9 0.0 3.2e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 RNase H SfsA PF03749.13 gi|313117115|ref|YP_004038239.1| - 5.2e-38 130.1 0.0 7.9e-38 129.5 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|313117115|ref|YP_004038239.1| - 6.1e-15 55.1 0.0 1.3e-14 54.1 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain ChuX_HutX PF06228.13 gi|313117115|ref|YP_004038239.1| - 0.034 13.9 0.0 1.3 8.8 0.0 2.2 1 1 1 2 2 2 0 Haem utilisation ChuX/HutX Polbeta PF18765.1 gi|313117117|ref|YP_004038241.1| - 6.6e-10 38.9 0.0 9.2e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|313117117|ref|YP_004038241.1| - 3.2e-06 27.3 0.1 4.1e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pox_P21 PF05313.12 gi|313117118|ref|YP_004038242.1| - 0.39 10.3 3.8 0.1 12.2 0.4 1.6 1 1 1 2 2 2 0 Poxvirus P21 membrane protein Imm17 PF15562.6 gi|313117118|ref|YP_004038242.1| - 0.91 9.4 0.0 0.91 9.4 0.0 2.8 3 0 0 3 3 3 0 Immunity protein 17 HTH_45 PF14947.6 gi|313117121|ref|YP_004038245.1| - 6e-07 29.4 0.1 1.6e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|313117121|ref|YP_004038245.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.19 gi|313117121|ref|YP_004038245.1| - 0.042 14.0 0.2 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Trp repressor protein HTH_20 PF12840.7 gi|313117121|ref|YP_004038245.1| - 0.095 12.8 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TgMIC1 PF11476.8 gi|313117123|ref|YP_004038247.1| - 0.038 13.7 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 DUF2203 PF09969.9 gi|313117124|ref|YP_004038248.1| - 0.03 15.1 1.0 0.091 13.5 0.3 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) APG17 PF04108.12 gi|313117124|ref|YP_004038248.1| - 0.037 13.2 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 ZapB PF06005.12 gi|313117124|ref|YP_004038248.1| - 0.037 14.4 0.0 0.068 13.6 0.0 1.3 1 0 0 1 1 1 0 Cell division protein ZapB ArdA PF07275.11 gi|313117124|ref|YP_004038248.1| - 0.076 13.6 0.1 0.11 13.1 0.1 1.2 1 0 0 1 1 1 0 Antirestriction protein (ArdA) BLOC1_2 PF10046.9 gi|313117124|ref|YP_004038248.1| - 0.11 12.8 0.1 0.26 11.6 0.1 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YabA PF06156.13 gi|313117124|ref|YP_004038248.1| - 0.17 12.5 0.1 0.25 12.0 0.1 1.2 1 0 0 1 1 1 0 Initiation control protein YabA Peripla_BP_2 PF01497.18 gi|313117128|ref|YP_004038252.1| - 5.4e-23 81.8 0.0 1.1e-22 80.8 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313117128|ref|YP_004038252.1| - 0.0013 18.5 0.2 0.0023 17.7 0.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF423 PF04241.15 gi|313117131|ref|YP_004038255.1| - 0.062 13.5 0.4 0.062 13.5 0.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Renin_r PF07850.14 gi|313117131|ref|YP_004038255.1| - 5.2 7.7 6.4 1.1 9.9 0.5 2.1 1 1 1 2 2 2 0 Renin receptor-like protein DUF202 PF02656.15 gi|313117131|ref|YP_004038255.1| - 9.8 6.7 13.5 1.1e+03 0.1 13.5 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.8 gi|313117132|ref|YP_004038256.1| - 0.16 12.3 4.6 0.28 11.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014731.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014731.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014731.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014731.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:34:17 2019 # [ok]