#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.6	gi|292654179|ref|YP_003534076.1|	-	8.4e-28	95.9	0.1	2.4e-27	94.4	0.0	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|292654179|ref|YP_003534076.1|	-	3.5e-12	46.7	0.3	1.2e-10	41.6	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654179|ref|YP_003534076.1|	-	2e-09	37.6	0.3	3.1e-08	33.8	0.2	2.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|292654179|ref|YP_003534076.1|	-	5.6e-08	33.0	1.1	1.5e-06	28.4	0.8	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|292654179|ref|YP_003534076.1|	-	4.5e-05	23.2	0.0	0.00011	21.9	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
T2SE	PF00437.15	gi|292654179|ref|YP_003534076.1|	-	0.00061	18.7	0.0	0.0011	17.9	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_17	PF13207.1	gi|292654179|ref|YP_003534076.1|	-	0.0028	18.4	0.0	0.013	16.2	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|292654179|ref|YP_003534076.1|	-	0.0028	17.1	0.0	0.0068	15.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|292654179|ref|YP_003534076.1|	-	0.003	16.4	0.0	0.0048	15.7	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_2	PF07724.9	gi|292654179|ref|YP_003534076.1|	-	0.0031	17.4	0.0	0.015	15.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|292654179|ref|YP_003534076.1|	-	0.0035	16.4	0.0	0.0077	15.3	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DUF815	PF05673.8	gi|292654179|ref|YP_003534076.1|	-	0.0042	16.0	0.0	0.0077	15.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_18	PF13238.1	gi|292654179|ref|YP_003534076.1|	-	0.0047	17.2	0.1	0.014	15.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|292654179|ref|YP_003534076.1|	-	0.011	16.0	0.0	0.028	14.7	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
FtsK_SpoIIIE	PF01580.13	gi|292654179|ref|YP_003534076.1|	-	0.012	15.1	3.6	0.09	12.2	2.5	2.1	1	1	0	1	1	1	0	FtsK/SpoIIIE	family
DEAD	PF00270.24	gi|292654179|ref|YP_003534076.1|	-	0.043	13.3	4.1	0.17	11.3	0.9	2.7	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
KAP_NTPase	PF07693.9	gi|292654179|ref|YP_003534076.1|	-	0.043	12.8	0.2	0.14	11.1	0.1	1.8	1	1	0	1	1	1	0	KAP	family	P-loop	domain
AAA_24	PF13479.1	gi|292654179|ref|YP_003534076.1|	-	0.049	13.2	0.1	0.11	12.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|292654179|ref|YP_003534076.1|	-	0.087	12.4	0.1	0.37	10.4	0.0	2.0	1	1	0	1	1	1	0	NACHT	domain
ToxN_toxin	PF13958.1	gi|292654179|ref|YP_003534076.1|	-	0.1	12.2	0.1	0.22	11.1	0.1	1.5	1	0	0	1	1	1	0	Toxin	ToxN,	type	III	toxin-antitoxin	system
RNA_helicase	PF00910.17	gi|292654179|ref|YP_003534076.1|	-	0.15	12.2	0.0	0.35	11.0	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Peptidase_S24	PF00717.18	gi|292654180|ref|YP_003534077.1|	-	0.0022	17.6	0.1	0.0039	16.7	0.0	1.5	1	0	0	1	1	1	1	Peptidase	S24-like
Antimicrobial10	PF08105.6	gi|292654180|ref|YP_003534077.1|	-	0.077	12.6	0.3	0.36	10.4	0.0	2.1	2	0	0	2	2	2	0	Metchnikowin	family
DNA_pol_E_B	PF04042.11	gi|292654181|ref|YP_003534078.1|	-	9.3e-15	54.4	0.0	1.4e-14	53.8	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.2	gi|292654181|ref|YP_003534078.1|	-	1.3e-13	51.0	0.3	2.9e-13	49.9	0.2	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292654181|ref|YP_003534078.1|	-	7.6e-07	28.7	1.9	1.7e-06	27.6	1.3	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.20	gi|292654181|ref|YP_003534078.1|	-	0.059	13.2	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
Oxidored_FMN	PF00724.15	gi|292654182|ref|YP_003534079.1|	-	1.3e-66	224.9	0.0	1.4e-66	224.7	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.16	gi|292654182|ref|YP_003534079.1|	-	0.0013	18.0	0.0	0.0019	17.4	0.0	1.2	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
NanE	PF04131.9	gi|292654182|ref|YP_003534079.1|	-	0.02	13.8	0.1	0.065	12.2	0.0	1.8	2	0	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
Dus	PF01207.12	gi|292654182|ref|YP_003534079.1|	-	0.047	12.5	0.0	0.067	12.0	0.0	1.3	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
GDPD_2	PF13653.1	gi|292654182|ref|YP_003534079.1|	-	0.11	12.6	0.6	74	3.7	0.0	3.9	3	0	0	3	3	3	0	Glycerophosphoryl	diester	phosphodiesterase	family
Zip	PF02535.17	gi|292654183|ref|YP_003534080.1|	-	6.5e-21	74.6	15.4	5.1e-16	58.5	5.4	2.1	2	0	0	2	2	2	2	ZIP	Zinc	transporter
Flavi_NS4B	PF01349.12	gi|292654183|ref|YP_003534080.1|	-	0.06	12.2	0.8	1.6	7.6	0.3	2.3	2	0	0	2	2	2	0	Flavivirus	non-structural	protein	NS4B
DUF2227	PF09988.4	gi|292654183|ref|YP_003534080.1|	-	0.088	12.4	0.1	0.51	9.9	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	metal-binding	protein	(DUF2227)
Imm26	PF15572.1	gi|292654183|ref|YP_003534080.1|	-	0.16	12.0	0.1	13	6.0	0.0	2.7	2	1	0	3	3	3	0	Immunity	protein	26
AA_kinase	PF00696.23	gi|292654185|ref|YP_003534082.1|	-	1.8e-48	165.1	3.5	1.8e-48	165.1	2.4	1.8	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.1	gi|292654185|ref|YP_003534082.1|	-	4.2e-17	61.4	0.2	6.1e-09	35.2	0.0	2.9	3	0	0	3	3	3	2	ACT	domain
ACT	PF01842.20	gi|292654185|ref|YP_003534082.1|	-	3.9e-15	54.9	4.6	7e-07	28.6	0.1	3.2	3	0	0	3	3	3	2	ACT	domain
ACT_4	PF13291.1	gi|292654185|ref|YP_003534082.1|	-	2.6e-05	24.4	0.0	0.08	13.2	0.0	2.6	2	0	0	2	2	2	2	ACT	domain
ACT_6	PF13740.1	gi|292654185|ref|YP_003534082.1|	-	0.0045	16.6	0.5	1.9	8.2	0.0	3.2	3	0	0	3	3	3	2	ACT	domain
BON	PF04972.12	gi|292654185|ref|YP_003534082.1|	-	0.063	13.0	1.1	0.36	10.6	0.2	2.7	2	0	0	2	2	2	0	BON	domain
Beta_elim_lyase	PF01212.16	gi|292654187|ref|YP_003534084.1|	-	5e-70	235.9	0.1	6.9e-70	235.4	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Metallophos_2	PF12850.2	gi|292654188|ref|YP_003534085.1|	-	1.5e-32	112.5	0.0	1.8e-32	112.3	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292654188|ref|YP_003534085.1|	-	1.8e-12	47.0	0.1	3.1e-12	46.3	0.1	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|292654188|ref|YP_003534085.1|	-	0.041	13.0	0.0	2.2	7.3	0.0	2.1	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
IMP_cyclohyd	PF07826.6	gi|292654189|ref|YP_003534086.1|	-	2.8e-63	212.8	0.5	3.3e-63	212.6	0.3	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
CGI-121	PF08617.5	gi|292654190|ref|YP_003534087.1|	-	3.8e-17	62.4	0.0	4.6e-17	62.1	0.0	1.1	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
DEAD	PF00270.24	gi|292654191|ref|YP_003534088.1|	-	3.1e-27	95.1	0.0	5.2e-27	94.3	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.1	gi|292654191|ref|YP_003534088.1|	-	2.8e-09	37.0	3.2	7.4e-09	35.6	1.3	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.26	gi|292654191|ref|YP_003534088.1|	-	3.6e-07	29.9	0.0	7.5e-07	28.9	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292654191|ref|YP_003534088.1|	-	3.3e-05	23.8	0.0	5.1e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.4	gi|292654191|ref|YP_003534088.1|	-	0.00031	20.2	0.0	0.00076	18.9	0.0	1.6	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.18	gi|292654191|ref|YP_003534088.1|	-	0.066	12.9	0.1	0.62	9.8	0.0	2.6	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Fer4_15	PF13459.1	gi|292654192|ref|YP_003534089.1|	-	1.1e-16	61.0	2.8	1.4e-16	60.8	1.9	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|292654192|ref|YP_003534089.1|	-	2e-05	24.8	1.1	4.1e-05	23.8	0.8	1.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4	PF00037.22	gi|292654192|ref|YP_003534089.1|	-	0.04	13.5	1.8	0.99	9.1	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|292654192|ref|YP_003534089.1|	-	0.077	12.8	0.0	0.31	10.8	0.0	1.8	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.6	gi|292654192|ref|YP_003534089.1|	-	0.13	12.0	0.2	0.68	9.7	0.2	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_7	PF12838.2	gi|292654192|ref|YP_003534089.1|	-	0.16	12.3	0.3	24	5.4	0.1	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|292654192|ref|YP_003534089.1|	-	0.23	11.4	3.3	5.7	6.9	0.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
KaiC	PF06745.8	gi|292654194|ref|YP_003534091.1|	-	0.00085	18.4	0.4	0.0011	18.1	0.3	1.1	1	0	0	1	1	1	1	KaiC
DUF2391	PF09622.5	gi|292654195|ref|YP_003534092.1|	-	2.5e-06	26.8	0.4	3.8e-06	26.2	0.3	1.4	1	1	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
DUF3483	PF11982.3	gi|292654195|ref|YP_003534092.1|	-	0.016	14.4	2.3	0.02	14.1	1.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3483)
DUF296	PF03479.10	gi|292654195|ref|YP_003534092.1|	-	0.037	13.6	0.2	0.081	12.5	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF296)
Methyltransf_11	PF08241.7	gi|292654196|ref|YP_003534093.1|	-	1.5e-23	83.1	0.0	2.6e-23	82.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654196|ref|YP_003534093.1|	-	1.7e-17	63.4	0.0	2.1e-17	63.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654196|ref|YP_003534093.1|	-	2.2e-14	53.4	0.1	3e-14	53.0	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654196|ref|YP_003534093.1|	-	5.2e-12	46.3	0.0	9.3e-12	45.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292654196|ref|YP_003534093.1|	-	6e-11	42.6	0.0	1.2e-10	41.5	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292654196|ref|YP_003534093.1|	-	3.4e-10	39.4	0.0	6.6e-10	38.4	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|292654196|ref|YP_003534093.1|	-	6.5e-10	39.3	0.0	1e-09	38.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654196|ref|YP_003534093.1|	-	1.8e-08	34.4	0.2	4.5e-08	33.1	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
MetW	PF07021.7	gi|292654196|ref|YP_003534093.1|	-	6.8e-06	25.5	0.0	1.2e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.15	gi|292654196|ref|YP_003534093.1|	-	0.00098	18.2	0.0	0.0013	17.8	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.6	gi|292654196|ref|YP_003534093.1|	-	0.0016	17.1	0.0	0.0034	16.1	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_8	PF05148.10	gi|292654196|ref|YP_003534093.1|	-	0.0032	17.1	0.0	0.0054	16.3	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_2	PF00891.13	gi|292654196|ref|YP_003534093.1|	-	0.0037	16.4	0.2	0.0056	15.9	0.2	1.2	1	0	0	1	1	1	1	O-methyltransferase
DUF2934	PF11154.3	gi|292654196|ref|YP_003534093.1|	-	0.0052	16.1	1.8	0.014	14.7	1.2	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2934)
PCMT	PF01135.14	gi|292654196|ref|YP_003534093.1|	-	0.0094	15.4	0.0	0.017	14.6	0.0	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.1	gi|292654196|ref|YP_003534093.1|	-	0.16	11.6	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
ABC_tran	PF00005.22	gi|292654197|ref|YP_003534094.1|	-	3.6e-34	118.0	0.0	5.6e-34	117.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|292654197|ref|YP_003534094.1|	-	1.7e-16	59.9	0.7	1.7e-16	59.9	0.5	2.7	3	0	0	3	3	3	1	TOBE	domain
AAA_21	PF13304.1	gi|292654197|ref|YP_003534094.1|	-	4.8e-09	36.5	0.0	5.7e-05	23.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|292654197|ref|YP_003534094.1|	-	3.7e-06	26.9	4.9	3.9e-06	26.8	0.8	2.8	2	1	0	2	2	2	1	TOBE	domain
AAA_22	PF13401.1	gi|292654197|ref|YP_003534094.1|	-	0.00063	19.8	0.0	0.0021	18.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292654197|ref|YP_003534094.1|	-	0.0029	16.8	0.0	0.21	10.7	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|292654197|ref|YP_003534094.1|	-	0.0049	16.8	1.9	0.014	15.4	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292654197|ref|YP_003534094.1|	-	0.0059	16.8	0.1	0.059	13.5	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|292654197|ref|YP_003534094.1|	-	0.0071	15.7	0.1	0.045	13.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.10	gi|292654197|ref|YP_003534094.1|	-	0.014	14.1	0.0	0.019	13.6	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_30	PF13604.1	gi|292654197|ref|YP_003534094.1|	-	0.024	14.2	0.0	0.055	13.0	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|292654197|ref|YP_003534094.1|	-	0.032	13.3	0.0	0.99	8.3	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.1	gi|292654197|ref|YP_003534094.1|	-	0.052	13.8	0.1	0.08	13.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|292654197|ref|YP_003534094.1|	-	0.052	13.2	1.3	0.28	10.9	0.0	2.8	3	1	1	4	4	3	0	Part	of	AAA	domain
AAA_29	PF13555.1	gi|292654197|ref|YP_003534094.1|	-	0.054	13.0	0.1	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|292654197|ref|YP_003534094.1|	-	0.072	13.0	0.3	0.53	10.2	0.2	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DUF258	PF03193.11	gi|292654197|ref|YP_003534094.1|	-	0.1	11.7	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_33	PF13671.1	gi|292654197|ref|YP_003534094.1|	-	0.11	12.3	0.2	0.86	9.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.4	gi|292654197|ref|YP_003534094.1|	-	0.12	10.9	0.2	0.79	8.2	0.0	2.2	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.17	gi|292654197|ref|YP_003534094.1|	-	0.15	10.8	0.0	0.21	10.3	0.0	1.1	1	0	0	1	1	1	0	NB-ARC	domain
BPD_transp_1	PF00528.17	gi|292654198|ref|YP_003534095.1|	-	1.2e-26	93.3	42.1	6.9e-16	58.2	7.9	3.4	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3464	PF11947.3	gi|292654198|ref|YP_003534095.1|	-	2.4	7.6	7.1	0.98	8.8	1.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3464)
SBP_bac_6	PF13343.1	gi|292654199|ref|YP_003534096.1|	-	2.8e-24	85.7	0.0	3.9e-24	85.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|292654199|ref|YP_003534096.1|	-	1e-23	84.5	1.5	1.4e-23	84.0	1.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292654199|ref|YP_003534096.1|	-	5.1e-09	36.3	0.5	7e-09	35.8	0.4	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|292654199|ref|YP_003534096.1|	-	8e-05	22.3	0.5	0.00012	21.7	0.0	1.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|292654199|ref|YP_003534096.1|	-	0.0062	16.4	7.6	0.014	15.3	5.2	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UPF0118	PF01594.11	gi|292654200|ref|YP_003534097.1|	-	1.2e-16	60.6	31.1	4.7e-16	58.6	21.6	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF20
Rhodanese	PF00581.15	gi|292654201|ref|YP_003534098.1|	-	1.1e-38	131.9	0.0	3.8e-21	75.5	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.15	gi|292654202|ref|YP_003534099.1|	-	6e-38	129.6	0.3	2.2e-20	73.1	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
SCFA_trans	PF02667.9	gi|292654203|ref|YP_003534100.1|	-	2.5e-126	422.0	24.0	2.9e-126	421.8	16.7	1.0	1	0	0	1	1	1	1	Short	chain	fatty	acid	transporter
Rubrerythrin	PF02915.12	gi|292654204|ref|YP_003534101.1|	-	0.041	14.1	0.5	1.7	8.9	0.2	2.5	2	1	0	2	2	2	0	Rubrerythrin
Phage_lysozyme	PF00959.14	gi|292654204|ref|YP_003534101.1|	-	0.12	12.6	0.6	6.7	7.0	0.0	2.7	1	1	2	3	3	3	0	Phage	lysozyme
DUF883	PF05957.8	gi|292654204|ref|YP_003534101.1|	-	1.8	9.0	8.8	0.29	11.5	0.7	2.8	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
YtxH	PF12732.2	gi|292654205|ref|YP_003534102.1|	-	0.15	12.4	1.0	0.38	11.1	0.7	1.7	1	1	0	1	1	1	0	YtxH-like	protein
Rop-like	PF05082.8	gi|292654205|ref|YP_003534102.1|	-	0.29	10.6	1.5	0.43	10.0	0.1	2.0	2	1	0	2	2	2	0	Rop-like
UvrB	PF12344.3	gi|292654206|ref|YP_003534103.1|	-	2.5e-21	74.9	0.7	4.6e-21	74.0	0.5	1.5	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.26	gi|292654206|ref|YP_003534103.1|	-	8.2e-14	51.2	1.4	1.1e-13	50.7	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.14	gi|292654206|ref|YP_003534103.1|	-	8.3e-09	34.6	6.6	8.3e-09	34.6	4.6	3.6	3	0	0	3	3	3	1	UvrB/uvrC	motif
ResIII	PF04851.10	gi|292654206|ref|YP_003534103.1|	-	1.4e-08	34.7	0.0	4.1e-08	33.2	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|292654206|ref|YP_003534103.1|	-	1.5e-05	24.5	0.2	0.0016	17.9	0.0	3.3	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|292654206|ref|YP_003534103.1|	-	0.00052	19.7	0.5	1.1	9.0	0.0	3.2	4	0	0	4	4	4	2	Part	of	AAA	domain
AAA_30	PF13604.1	gi|292654206|ref|YP_003534103.1|	-	0.008	15.7	0.0	0.19	11.2	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
UB2H	PF14814.1	gi|292654206|ref|YP_003534103.1|	-	0.011	15.4	0.0	0.041	13.6	0.0	2.0	1	0	0	1	1	1	0	Bifunctional	transglycosylase	second	domain
DUF87	PF01935.12	gi|292654206|ref|YP_003534103.1|	-	0.013	15.3	0.1	0.054	13.3	0.1	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA	PF00004.24	gi|292654206|ref|YP_003534103.1|	-	0.055	13.6	0.1	6.9	6.8	0.0	3.4	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NUDIX	PF00293.23	gi|292654207|ref|YP_003534104.1|	-	3.1e-22	78.6	1.3	3.5e-22	78.4	0.9	1.1	1	0	0	1	1	1	1	NUDIX	domain
TauE	PF01925.14	gi|292654209|ref|YP_003534106.1|	-	1e-27	97.1	25.2	1e-27	97.1	17.4	1.5	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Usp	PF00582.21	gi|292654210|ref|YP_003534107.1|	-	7.8e-32	110.3	1.4	9.5e-32	110.1	1.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
FR47	PF08445.5	gi|292654210|ref|YP_003534107.1|	-	0.027	14.2	0.0	0.044	13.5	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
AvrPto	PF11592.3	gi|292654210|ref|YP_003534107.1|	-	0.055	13.2	0.0	0.084	12.6	0.0	1.3	1	0	0	1	1	1	0	Central	core	of	the	bacterial	effector	protein	AvrPto
4HBT	PF03061.17	gi|292654211|ref|YP_003534108.1|	-	6.5e-19	67.8	0.3	1e-18	67.2	0.2	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|292654211|ref|YP_003534108.1|	-	0.00019	21.8	0.0	0.00024	21.5	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
MaoC_dehydratas	PF01575.14	gi|292654211|ref|YP_003534108.1|	-	0.0045	16.3	0.0	0.0072	15.6	0.0	1.3	1	0	0	1	1	1	1	MaoC	like	domain
4HBT_3	PF13622.1	gi|292654211|ref|YP_003534108.1|	-	0.068	12.9	0.1	0.081	12.6	0.1	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
Band_7	PF01145.20	gi|292654212|ref|YP_003534109.1|	-	6.5e-36	123.9	2.1	6.5e-36	123.9	1.5	1.6	2	0	0	2	2	2	1	SPFH	domain	/	Band	7	family
YkyA	PF10368.4	gi|292654212|ref|YP_003534109.1|	-	0.0045	16.3	2.2	0.0072	15.6	1.5	1.2	1	0	0	1	1	1	1	Putative	cell-wall	binding	lipoprotein
Band_7_1	PF13421.1	gi|292654212|ref|YP_003534109.1|	-	0.0085	15.6	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
TcpE	PF12648.2	gi|292654213|ref|YP_003534110.1|	-	0.12	12.5	0.5	0.15	12.2	0.3	1.1	1	0	0	1	1	1	0	TcpE	family
Colicin_V	PF02674.11	gi|292654213|ref|YP_003534110.1|	-	0.2	11.5	4.4	0.24	11.2	3.0	1.1	1	0	0	1	1	1	0	Colicin	V	production	protein
YjgP_YjgQ	PF03739.9	gi|292654213|ref|YP_003534110.1|	-	0.27	9.9	1.9	0.26	9.9	1.3	1.0	1	0	0	1	1	1	0	Predicted	permease	YjgP/YjgQ	family
MNHE	PF01899.11	gi|292654213|ref|YP_003534110.1|	-	1.7	8.2	7.1	2.2	7.9	4.9	1.2	1	0	0	1	1	1	0	Na+/H+	ion	antiporter	subunit
Gate	PF07670.9	gi|292654213|ref|YP_003534110.1|	-	2.8	7.8	7.1	9.2	6.2	5.2	1.6	1	1	0	1	1	1	0	Nucleoside	recognition
2_5_RNA_ligase2	PF13563.1	gi|292654214|ref|YP_003534111.1|	-	1e-17	64.2	0.0	1.4e-17	63.8	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.11	gi|292654214|ref|YP_003534111.1|	-	7.6e-07	29.0	0.0	0.0067	16.3	0.0	2.3	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.4	gi|292654214|ref|YP_003534111.1|	-	0.0011	18.7	0.0	0.0013	18.4	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
p450	PF00067.17	gi|292654215|ref|YP_003534112.1|	-	9.6e-90	301.3	0.0	1.2e-89	301.0	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
Helicase_C_2	PF13307.1	gi|292654216|ref|YP_003534113.1|	-	2.4e-33	115.4	0.0	6.7e-33	113.9	0.0	1.8	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|292654216|ref|YP_003534113.1|	-	3.2e-21	75.5	0.1	7.7e-21	74.2	0.0	1.6	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.24	gi|292654216|ref|YP_003534113.1|	-	1.2e-09	37.8	1.1	7e-07	28.8	0.2	3.3	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|292654216|ref|YP_003534113.1|	-	2.3e-06	27.5	3.4	7.4e-06	25.9	0.6	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
KaiC	PF06745.8	gi|292654216|ref|YP_003534113.1|	-	0.00095	18.3	0.0	0.0016	17.6	0.0	1.3	1	0	0	1	1	1	1	KaiC
PhoH	PF02562.11	gi|292654216|ref|YP_003534113.1|	-	0.0051	16.0	0.0	0.012	14.8	0.0	1.6	1	0	0	1	1	1	1	PhoH-like	protein
Zot	PF05707.7	gi|292654216|ref|YP_003534113.1|	-	0.0055	16.1	0.2	0.89	8.9	0.0	2.4	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
T2SE	PF00437.15	gi|292654216|ref|YP_003534113.1|	-	0.01	14.7	0.0	0.017	14.0	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|292654216|ref|YP_003534113.1|	-	0.01	15.5	0.1	0.033	13.9	0.1	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_16	PF13191.1	gi|292654216|ref|YP_003534113.1|	-	0.017	15.0	1.2	0.12	12.3	0.9	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654216|ref|YP_003534113.1|	-	0.025	14.7	1.1	0.4	10.8	0.3	2.5	1	1	1	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|292654216|ref|YP_003534113.1|	-	0.033	13.7	1.0	0.057	13.0	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|292654216|ref|YP_003534113.1|	-	0.036	13.0	0.3	0.43	9.5	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_34	PF13872.1	gi|292654216|ref|YP_003534113.1|	-	0.05	12.3	0.0	0.1	11.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
TrwB_AAD_bind	PF10412.4	gi|292654216|ref|YP_003534113.1|	-	0.051	12.1	0.0	0.1	11.1	0.0	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Sigma54_activat	PF00158.21	gi|292654216|ref|YP_003534113.1|	-	0.057	12.8	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
DAP3	PF10236.4	gi|292654216|ref|YP_003534113.1|	-	0.13	11.1	0.0	0.24	10.3	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
YqhR	PF11085.3	gi|292654217|ref|YP_003534114.1|	-	0.0068	15.9	3.5	0.024	14.1	2.4	1.8	1	1	0	1	1	1	1	Conserved	membrane	protein	YqhR
DUF1440	PF07274.7	gi|292654217|ref|YP_003534114.1|	-	0.019	14.9	2.3	0.02	14.8	0.4	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
MtrF	PF09472.5	gi|292654217|ref|YP_003534114.1|	-	0.054	12.7	0.3	0.054	12.7	0.2	3.1	3	1	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
DUF2938	PF11158.3	gi|292654217|ref|YP_003534114.1|	-	0.14	11.5	11.0	0.021	14.1	4.1	1.9	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2938)
DUF3147	PF11345.3	gi|292654217|ref|YP_003534114.1|	-	1	9.4	10.1	0.32	11.0	4.5	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3147)
RskA	PF10099.4	gi|292654217|ref|YP_003534114.1|	-	9	6.0	8.2	0.99	9.1	1.8	2.0	2	0	0	2	2	2	0	Anti-sigma-K	factor	rskA
OTCace	PF00185.19	gi|292654218|ref|YP_003534115.1|	-	4.5e-48	163.1	0.0	8.3e-48	162.2	0.0	1.4	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.16	gi|292654218|ref|YP_003534115.1|	-	4.7e-47	159.2	0.0	6.7e-47	158.7	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Peptidase_M20	PF01546.23	gi|292654219|ref|YP_003534116.1|	-	2e-26	92.6	0.0	3.2e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292654219|ref|YP_003534116.1|	-	0.00017	21.3	0.0	0.00035	20.2	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|292654219|ref|YP_003534116.1|	-	0.005	16.6	0.4	0.023	14.4	0.1	2.1	2	1	0	2	2	2	1	Peptidase	family	M28
Aminotran_3	PF00202.16	gi|292654220|ref|YP_003534117.1|	-	8.7e-101	337.1	0.2	1e-100	336.9	0.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Cys_Met_Meta_PP	PF01053.15	gi|292654220|ref|YP_003534117.1|	-	0.0011	17.3	0.0	0.0049	15.2	0.0	1.8	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
AA_kinase	PF00696.23	gi|292654221|ref|YP_003534118.1|	-	1.7e-31	109.6	2.6	2.7e-31	108.9	1.8	1.3	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.19	gi|292654222|ref|YP_003534119.1|	-	9.8e-28	96.8	0.0	1.6e-27	96.2	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|292654222|ref|YP_003534119.1|	-	6.3e-07	29.4	0.0	2.9e-06	27.2	0.0	2.0	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|292654222|ref|YP_003534119.1|	-	0.052	13.4	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
RimK	PF08443.6	gi|292654223|ref|YP_003534120.1|	-	3.8e-40	137.3	0.0	5.2e-40	136.9	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|292654223|ref|YP_003534120.1|	-	5.3e-18	65.4	0.0	8.8e-18	64.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|292654223|ref|YP_003534120.1|	-	2.1e-10	40.0	0.0	3.7e-10	39.2	0.0	1.4	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|292654223|ref|YP_003534120.1|	-	1.4e-09	38.0	0.0	2e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|292654223|ref|YP_003534120.1|	-	1.6e-09	36.9	0.0	2.5e-09	36.3	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|292654223|ref|YP_003534120.1|	-	1.8e-06	27.4	0.0	3.5e-06	26.4	0.0	1.7	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.17	gi|292654223|ref|YP_003534120.1|	-	4e-06	26.2	0.0	5e-05	22.7	0.0	2.4	2	1	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|292654223|ref|YP_003534120.1|	-	9.2e-06	25.0	0.0	0.00015	21.0	0.0	2.6	1	1	2	3	3	3	1	ATP-grasp	domain
Lyase_1	PF00206.15	gi|292654225|ref|YP_003534122.1|	-	3.8e-56	190.5	0.1	6.7e-56	189.7	0.1	1.4	1	0	0	1	1	1	1	Lyase
ASL_C2	PF14698.1	gi|292654225|ref|YP_003534122.1|	-	2.9e-12	46.4	2.2	1.8e-11	43.9	1.6	2.5	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
Arginosuc_synth	PF00764.14	gi|292654226|ref|YP_003534123.1|	-	3.2e-146	487.3	0.0	3.7e-146	487.1	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.8	gi|292654226|ref|YP_003534123.1|	-	4.2e-05	22.9	0.0	7.7e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.16	gi|292654226|ref|YP_003534123.1|	-	0.00011	21.8	0.1	0.00026	20.5	0.0	1.6	2	0	0	2	2	2	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|292654226|ref|YP_003534123.1|	-	0.00041	19.3	0.0	0.0006	18.7	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|292654226|ref|YP_003534123.1|	-	0.00085	17.9	0.0	0.0012	17.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
DUF2905	PF11146.3	gi|292654227|ref|YP_003534124.1|	-	0.15	12.0	2.0	0.15	11.9	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2905)
SecE	PF00584.15	gi|292654227|ref|YP_003534124.1|	-	0.24	11.0	3.5	0.24	10.9	2.4	1.1	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
HemY_N	PF07219.8	gi|292654227|ref|YP_003534124.1|	-	2	8.0	4.2	2	8.0	2.9	1.1	1	0	0	1	1	1	0	HemY	protein	N-terminus
Na_H_Exchanger	PF00999.16	gi|292654228|ref|YP_003534125.1|	-	9e-51	172.5	45.1	1.1e-50	172.2	31.3	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Class_IIIsignal	PF04021.7	gi|292654228|ref|YP_003534125.1|	-	2.3	8.0	7.3	24	4.8	1.6	4.2	2	0	0	2	2	2	0	Class	III	signal	peptide
TrkA_C	PF02080.16	gi|292654229|ref|YP_003534126.1|	-	3.3e-18	65.0	0.2	8.1e-18	63.7	0.0	1.7	2	0	0	2	2	2	1	TrkA-C	domain
MFS_2	PF13347.1	gi|292654230|ref|YP_003534127.1|	-	0.37	9.1	8.8	0.22	9.8	4.9	1.5	2	0	0	2	2	2	0	MFS/sugar	transport	protein
tRNA-synt_2b	PF00587.20	gi|292654231|ref|YP_003534128.1|	-	9.3e-53	178.3	0.0	1.3e-52	177.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|292654231|ref|YP_003534128.1|	-	7.7e-22	77.0	0.0	1.5e-21	76.1	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
LytR_C	PF13399.1	gi|292654231|ref|YP_003534128.1|	-	0.063	13.6	0.3	0.67	10.3	0.0	2.4	2	0	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
zf-ribbon_3	PF13248.1	gi|292654231|ref|YP_003534128.1|	-	9.1	5.6	6.7	17	4.7	2.8	2.5	2	1	1	3	3	3	0	zinc-ribbon	domain
CBS	PF00571.23	gi|292654232|ref|YP_003534129.1|	-	7.3e-35	118.4	16.4	4.5e-10	39.1	0.5	4.1	4	0	0	4	4	4	4	CBS	domain
TusA	PF01206.12	gi|292654232|ref|YP_003534129.1|	-	0.037	13.6	0.0	0.091	12.3	0.0	1.7	1	0	0	1	1	1	0	Sulfurtransferase	TusA
ABC_tran	PF00005.22	gi|292654235|ref|YP_003534132.1|	-	1.8e-36	125.4	0.0	8.7e-36	123.2	0.0	1.9	2	0	0	2	2	2	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292654235|ref|YP_003534132.1|	-	8.6e-17	61.2	0.4	1.8e-16	60.2	0.3	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292654235|ref|YP_003534132.1|	-	1.2e-08	35.2	0.1	1.3e-05	25.3	0.1	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|292654235|ref|YP_003534132.1|	-	8.5e-06	25.9	0.1	3.8e-05	23.8	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292654235|ref|YP_003534132.1|	-	4.1e-05	22.9	0.0	6.4e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|292654235|ref|YP_003534132.1|	-	0.0023	17.1	0.1	0.0039	16.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Sigma54_activat	PF00158.21	gi|292654235|ref|YP_003534132.1|	-	0.0062	16.0	0.1	3.1	7.2	0.0	2.2	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_16	PF13191.1	gi|292654235|ref|YP_003534132.1|	-	0.0073	16.3	1.1	0.014	15.3	0.3	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292654235|ref|YP_003534132.1|	-	0.0091	15.5	0.1	0.017	14.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|292654235|ref|YP_003534132.1|	-	0.016	15.4	0.0	0.08	13.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|292654235|ref|YP_003534132.1|	-	0.021	14.5	0.1	0.34	10.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|292654235|ref|YP_003534132.1|	-	0.022	14.9	0.1	0.13	12.4	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.13	gi|292654235|ref|YP_003534132.1|	-	0.049	13.1	0.0	0.1	12.0	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
MMR_HSR1	PF01926.18	gi|292654235|ref|YP_003534132.1|	-	0.079	12.9	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ATP-synt_ab	PF00006.20	gi|292654235|ref|YP_003534132.1|	-	0.094	12.1	0.0	0.094	12.1	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Mg_chelatase	PF01078.16	gi|292654235|ref|YP_003534132.1|	-	0.12	11.5	0.0	0.23	10.6	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.1	gi|292654235|ref|YP_003534132.1|	-	0.13	11.6	0.0	0.97	8.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|292654235|ref|YP_003534132.1|	-	0.13	12.1	0.1	0.79	9.6	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.1	gi|292654235|ref|YP_003534132.1|	-	0.16	10.3	0.1	7.6	4.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|292654235|ref|YP_003534132.1|	-	0.26	10.3	0.1	2	7.3	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|292654236|ref|YP_003534133.1|	-	1.9e-31	109.2	0.0	2.5e-31	108.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292654236|ref|YP_003534133.1|	-	5.9e-18	64.9	0.3	1.2e-17	63.9	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292654236|ref|YP_003534133.1|	-	4.9e-08	33.2	0.0	2.9e-06	27.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292654236|ref|YP_003534133.1|	-	3.8e-06	26.2	0.0	5.6e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|292654236|ref|YP_003534133.1|	-	0.00055	20.0	0.5	0.018	15.1	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292654236|ref|YP_003534133.1|	-	0.0012	18.4	0.6	0.013	14.9	0.1	2.2	1	1	0	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|292654236|ref|YP_003534133.1|	-	0.0026	17.7	0.1	0.005	16.8	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|292654236|ref|YP_003534133.1|	-	0.006	16.0	0.1	0.011	15.2	0.1	1.4	1	1	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF87	PF01935.12	gi|292654236|ref|YP_003534133.1|	-	0.014	15.2	0.0	0.028	14.2	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
Sigma54_activat	PF00158.21	gi|292654236|ref|YP_003534133.1|	-	0.019	14.4	0.1	0.23	10.9	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_29	PF13555.1	gi|292654236|ref|YP_003534133.1|	-	0.051	13.0	0.0	0.095	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.7	gi|292654236|ref|YP_003534133.1|	-	0.076	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
MobB	PF03205.9	gi|292654236|ref|YP_003534133.1|	-	0.08	12.6	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
FtsK_SpoIIIE	PF01580.13	gi|292654236|ref|YP_003534133.1|	-	0.13	11.7	0.0	0.23	10.8	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_25	PF13481.1	gi|292654236|ref|YP_003534133.1|	-	0.14	11.5	0.1	0.55	9.6	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|292654236|ref|YP_003534133.1|	-	0.15	11.0	0.2	0.36	9.8	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF2075	PF09848.4	gi|292654236|ref|YP_003534133.1|	-	0.16	10.8	0.0	0.23	10.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.17	gi|292654236|ref|YP_003534133.1|	-	0.2	10.4	0.1	0.41	9.4	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
BPD_transp_1	PF00528.17	gi|292654237|ref|YP_003534134.1|	-	1.3e-21	76.9	11.6	1.3e-21	76.9	8.0	2.7	2	2	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|292654237|ref|YP_003534134.1|	-	1.8e-05	24.0	0.0	1.8e-05	24.0	0.0	3.7	4	0	0	4	4	4	2	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF3366	PF11846.3	gi|292654237|ref|YP_003534134.1|	-	0.031	14.1	0.8	0.12	12.2	0.3	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3366)
BPD_transp_1	PF00528.17	gi|292654238|ref|YP_003534135.1|	-	6.6e-33	113.7	11.5	6.6e-33	113.7	8.0	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|292654239|ref|YP_003534136.1|	-	1.8e-62	211.3	8.4	2.9e-62	210.6	5.9	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|292654239|ref|YP_003534136.1|	-	2e-05	24.2	6.8	5e-05	22.9	4.7	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF296	PF03479.10	gi|292654241|ref|YP_003534138.1|	-	6.5e-26	90.3	0.0	7.5e-26	90.1	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF296)
CAP59_mtransfer	PF11735.3	gi|292654241|ref|YP_003534138.1|	-	0.0041	16.3	0.0	0.0043	16.3	0.0	1.1	1	0	0	1	1	1	1	Cryptococcal	mannosyltransferase	1
PolC_DP2	PF03833.8	gi|292654242|ref|YP_003534139.1|	-	0	1319.1	0.0	0	1319.1	0.0	1.6	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
Nop10p	PF04135.7	gi|292654242|ref|YP_003534139.1|	-	0.024	14.3	0.6	0.081	12.6	0.0	2.3	2	0	0	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
Sigma70_ner	PF04546.8	gi|292654242|ref|YP_003534139.1|	-	0.68	9.5	5.7	1.9	8.0	3.9	1.8	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
DZR	PF12773.2	gi|292654242|ref|YP_003534139.1|	-	1.6	8.6	17.5	29	4.5	0.4	3.2	2	1	0	2	2	2	0	Double	zinc	ribbon
PQQ_2	PF13360.1	gi|292654243|ref|YP_003534140.1|	-	9.6e-28	97.2	10.5	8.1e-21	74.5	0.8	3.4	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|292654243|ref|YP_003534140.1|	-	1.3e-17	63.4	25.7	1e-07	31.9	0.4	8.2	7	1	0	7	7	7	5	PQQ-like	domain
PQQ	PF01011.16	gi|292654243|ref|YP_003534140.1|	-	2.2e-09	36.3	4.5	0.00073	18.9	0.0	5.6	7	0	0	7	7	7	2	PQQ	enzyme	repeat
HypA	PF01155.14	gi|292654244|ref|YP_003534141.1|	-	0.00022	20.8	0.1	0.00026	20.6	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Rubredoxin	PF00301.15	gi|292654244|ref|YP_003534141.1|	-	0.00069	19.4	2.1	0.25	11.2	0.2	2.3	1	1	1	2	2	2	2	Rubredoxin
zf-ribbon_3	PF13248.1	gi|292654244|ref|YP_003534141.1|	-	0.0022	17.1	0.8	0.14	11.4	0.3	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654244|ref|YP_003534141.1|	-	0.0096	15.2	0.4	2.1	7.7	0.0	2.3	2	0	0	2	2	2	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|292654244|ref|YP_003534141.1|	-	0.018	14.5	1.6	0.35	10.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292654244|ref|YP_003534141.1|	-	0.031	14.0	0.8	0.068	12.9	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ISL3	PF14690.1	gi|292654244|ref|YP_003534141.1|	-	0.065	13.2	0.6	0.96	9.5	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DnaJ_CXXCXGXG	PF00684.14	gi|292654244|ref|YP_003534141.1|	-	0.081	12.9	0.2	0.11	12.5	0.1	1.2	1	0	0	1	1	1	0	DnaJ	central	domain
zinc_ribbon_5	PF13719.1	gi|292654244|ref|YP_003534141.1|	-	0.099	12.2	0.4	9.5	5.9	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|292654244|ref|YP_003534141.1|	-	0.1	12.5	1.8	8.1	6.4	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_4	PF13717.1	gi|292654244|ref|YP_003534141.1|	-	0.11	12.1	0.4	11	5.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654244|ref|YP_003534141.1|	-	0.12	12.1	0.5	8.8	6.2	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292654244|ref|YP_003534141.1|	-	0.13	12.2	3.8	0.37	10.7	2.7	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
Prim_Zn_Ribbon	PF08273.7	gi|292654244|ref|YP_003534141.1|	-	0.13	12.3	1.7	2.7	8.1	0.1	2.5	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-IS66	PF13005.2	gi|292654244|ref|YP_003534141.1|	-	0.6	10.1	2.4	2.4	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-RanBP	PF00641.13	gi|292654244|ref|YP_003534141.1|	-	0.84	8.7	3.3	3.3	6.8	0.1	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
PhnA_Zn_Ribbon	PF08274.7	gi|292654244|ref|YP_003534141.1|	-	0.86	9.4	3.8	3.3	7.5	0.3	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
A2L_zn_ribbon	PF08792.5	gi|292654244|ref|YP_003534141.1|	-	1.2	8.7	3.6	16	5.0	2.5	2.2	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292654244|ref|YP_003534141.1|	-	1.3	8.5	5.1	13	5.4	0.2	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
ApbA_C	PF08546.6	gi|292654245|ref|YP_003534142.1|	-	1.7e-33	115.2	0.9	1.7e-33	115.2	0.7	1.5	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.11	gi|292654245|ref|YP_003534142.1|	-	1.4e-27	95.9	0.2	2.2e-27	95.3	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh_N	PF03721.9	gi|292654245|ref|YP_003534142.1|	-	0.1	11.9	0.1	0.29	10.5	0.1	1.7	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Sulfatase	PF00884.18	gi|292654246|ref|YP_003534143.1|	-	1.3e-45	155.9	0.8	2e-45	155.2	0.5	1.3	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|292654246|ref|YP_003534143.1|	-	9e-12	44.9	2.3	2.2e-06	27.2	0.1	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1501	PF07394.7	gi|292654246|ref|YP_003534143.1|	-	0.0069	15.2	0.1	0.016	14.0	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
DUF229	PF02995.12	gi|292654246|ref|YP_003534143.1|	-	0.031	12.7	0.0	0.039	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
DUF310	PF03750.8	gi|292654246|ref|YP_003534143.1|	-	0.16	12.1	0.0	0.41	10.8	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF310)
NifU	PF01106.12	gi|292654247|ref|YP_003534144.1|	-	6.6e-11	41.8	0.0	9.2e-11	41.3	0.0	1.3	1	0	0	1	1	1	1	NifU-like	domain
Prok_Ub	PF14454.1	gi|292654248|ref|YP_003534145.1|	-	0.17	11.5	0.9	0.32	10.6	0.0	2.0	3	0	0	3	3	3	0	Prokaryotic	Ubiquitin
Snf7	PF03357.16	gi|292654248|ref|YP_003534145.1|	-	3.1	7.1	4.4	9.7	5.5	3.1	1.8	1	1	0	1	1	1	0	Snf7
PPK2	PF03976.9	gi|292654250|ref|YP_003534147.1|	-	1.3e-107	358.2	3.8	1.5e-107	358.0	2.6	1.0	1	0	0	1	1	1	1	Polyphosphate	kinase	2	(PPK2)
AAA_33	PF13671.1	gi|292654250|ref|YP_003534147.1|	-	0.0097	15.7	0.3	0.043	13.6	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
DUF772	PF05598.6	gi|292654250|ref|YP_003534147.1|	-	0.1	12.4	0.1	0.98	9.3	0.0	2.4	1	1	1	2	2	2	0	Transposase	domain	(DUF772)
DHHA1	PF02272.14	gi|292654251|ref|YP_003534148.1|	-	4.7e-15	55.0	2.1	1.2e-14	53.7	1.5	1.7	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|292654251|ref|YP_003534148.1|	-	2.9e-11	43.1	0.0	4.1e-11	42.7	0.0	1.2	1	0	0	1	1	1	1	DHH	family
MFS_1	PF07690.11	gi|292654252|ref|YP_003534149.1|	-	2.9e-26	92.0	63.5	3.1e-24	85.3	34.8	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|292654252|ref|YP_003534149.1|	-	2.5e-05	22.8	8.7	2.5e-05	22.8	6.0	3.0	1	1	0	2	2	2	1	MFS/sugar	transport	protein
2TM	PF13239.1	gi|292654252|ref|YP_003534149.1|	-	0.082	12.9	2.1	1.6	8.8	0.1	3.0	2	0	0	2	2	2	0	2TM	domain
FixP_N	PF14715.1	gi|292654252|ref|YP_003534149.1|	-	9.7	5.6	11.2	4.7	6.6	1.6	3.5	3	0	0	3	3	3	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
HEM4	PF02602.10	gi|292654253|ref|YP_003534150.1|	-	6e-42	143.4	0.9	7.2e-42	143.1	0.7	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
TP_methylase	PF00590.15	gi|292654254|ref|YP_003534151.1|	-	2e-51	174.7	0.5	2.3e-51	174.4	0.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Porphobil_deam	PF01379.15	gi|292654255|ref|YP_003534152.1|	-	1.2e-61	207.3	0.3	4.6e-50	169.5	0.0	2.2	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|292654255|ref|YP_003534152.1|	-	9.6e-09	35.2	0.1	2.7e-08	33.7	0.0	1.8	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
DUF2798	PF11391.3	gi|292654257|ref|YP_003534154.1|	-	0.6	9.9	3.1	0.47	10.2	1.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2798)
Aminotran_3	PF00202.16	gi|292654258|ref|YP_003534155.1|	-	8.7e-66	222.0	0.0	1.1e-65	221.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|292654258|ref|YP_003534155.1|	-	6.9e-05	21.9	0.0	0.00012	21.1	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Abi	PF02517.11	gi|292654259|ref|YP_003534156.1|	-	1.4e-06	28.3	7.2	4.3e-06	26.7	5.0	2.1	1	1	0	1	1	1	1	CAAX	protease	self-immunity
TMEM125	PF15109.1	gi|292654259|ref|YP_003534156.1|	-	0.21	11.7	2.0	0.87	9.7	0.1	2.5	2	1	0	2	2	2	0	TMEM125	protein	family
P-II	PF00543.17	gi|292654260|ref|YP_003534157.1|	-	6.2e-33	113.3	0.1	7.3e-33	113.1	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Gifsy-2	PF13856.1	gi|292654260|ref|YP_003534157.1|	-	0.12	12.4	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	ATP-binding	sugar	transporter	from	pro-phage
Ammonium_transp	PF00909.16	gi|292654261|ref|YP_003534158.1|	-	3.4e-96	322.1	38.5	3.9e-96	321.9	26.7	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
DUF373	PF04123.8	gi|292654261|ref|YP_003534158.1|	-	3.4	6.5	17.3	0.03	13.3	5.8	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
P-II	PF00543.17	gi|292654262|ref|YP_003534159.1|	-	1.4e-34	118.6	0.1	1.6e-34	118.4	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Ammonium_transp	PF00909.16	gi|292654263|ref|YP_003534160.1|	-	1e-100	337.0	40.7	1.2e-100	336.8	28.2	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
PsbY	PF06298.6	gi|292654263|ref|YP_003534160.1|	-	0.011	15.1	0.5	0.81	9.2	0.1	3.1	2	0	0	2	2	2	0	Photosystem	II	protein	Y	(PsbY)
ALAD	PF00490.16	gi|292654264|ref|YP_003534161.1|	-	3.7e-137	456.5	0.0	4.1e-137	456.3	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
SNARE_assoc	PF09335.6	gi|292654265|ref|YP_003534162.1|	-	0.056	13.6	1.8	0.088	13.0	1.2	1.5	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
RseC_MucC	PF04246.7	gi|292654265|ref|YP_003534162.1|	-	0.68	9.5	5.2	0.82	9.2	3.3	1.3	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
SNARE_assoc	PF09335.6	gi|292654266|ref|YP_003534163.1|	-	0.00052	20.2	0.7	0.00055	20.1	0.5	1.2	1	0	0	1	1	1	1	SNARE	associated	Golgi	protein
Thi4	PF01946.12	gi|292654266|ref|YP_003534163.1|	-	0.062	12.3	0.1	0.066	12.2	0.1	1.0	1	0	0	1	1	1	0	Thi4	family
DUF3209	PF11483.3	gi|292654267|ref|YP_003534164.1|	-	0.041	14.2	0.6	0.049	13.9	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3209)
HNH	PF01844.18	gi|292654267|ref|YP_003534164.1|	-	0.054	13.3	1.6	0.2	11.5	0.5	1.9	2	0	0	2	2	2	0	HNH	endonuclease
PyrI_C	PF02748.10	gi|292654267|ref|YP_003534164.1|	-	0.78	9.2	3.1	1	8.8	1.0	1.9	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
YyzF	PF14116.1	gi|292654267|ref|YP_003534164.1|	-	6.3	6.8	5.9	1.1	9.3	1.1	1.9	2	1	0	2	2	2	0	YyzF-like	protein
PHP	PF02811.14	gi|292654268|ref|YP_003534165.1|	-	7.1e-12	45.4	0.0	1.3e-11	44.6	0.0	1.5	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.1	gi|292654268|ref|YP_003534165.1|	-	0.0009	18.6	0.4	0.0027	17.1	0.0	2.0	2	0	0	2	2	2	1	PHP-associated
PqqD	PF05402.7	gi|292654269|ref|YP_003534166.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
NAD_binding_10	PF13460.1	gi|292654273|ref|YP_003534170.1|	-	3.1e-27	95.7	1.2	4.1e-27	95.3	0.8	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|292654273|ref|YP_003534170.1|	-	1.7e-15	56.9	0.0	2.5e-15	56.3	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.16	gi|292654273|ref|YP_003534170.1|	-	1.1e-11	44.6	0.0	3.3e-10	39.8	0.0	2.2	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292654273|ref|YP_003534170.1|	-	3.5e-09	35.7	0.0	7.4e-09	34.7	0.0	1.5	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|292654273|ref|YP_003534170.1|	-	1.6e-07	30.4	0.0	0.013	14.3	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|292654273|ref|YP_003534170.1|	-	3.1e-05	23.0	0.0	7.2e-05	21.8	0.0	1.6	1	0	0	1	1	1	1	Male	sterility	protein
TrkA_N	PF02254.13	gi|292654273|ref|YP_003534170.1|	-	0.0035	17.3	0.0	0.069	13.1	0.0	2.5	2	0	0	2	2	2	1	TrkA-N	domain
Semialdhyde_dh	PF01118.19	gi|292654273|ref|YP_003534170.1|	-	0.031	14.5	0.0	0.1	12.9	0.0	1.9	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|292654273|ref|YP_003534170.1|	-	0.033	14.0	1.0	0.095	12.6	0.1	2.2	1	1	0	1	1	1	0	short	chain	dehydrogenase
DUF4147	PF13660.1	gi|292654273|ref|YP_003534170.1|	-	0.061	12.4	0.0	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4147)
DapB_N	PF01113.15	gi|292654273|ref|YP_003534170.1|	-	0.097	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
CxxCxxCC	PF03692.10	gi|292654274|ref|YP_003534171.1|	-	0.00027	21.3	3.2	0.0054	17.1	2.2	2.2	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
zf-P11	PF03854.9	gi|292654275|ref|YP_003534172.1|	-	0.06	12.8	0.3	0.16	11.4	0.0	1.7	2	0	0	2	2	2	0	P-11	zinc	finger
Helicase_C_2	PF13307.1	gi|292654276|ref|YP_003534173.1|	-	5.1e-20	72.0	0.0	7.4e-20	71.5	0.0	1.2	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|292654276|ref|YP_003534173.1|	-	3.5e-07	29.7	0.0	5.4e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	DEAD_2
ResIII	PF04851.10	gi|292654276|ref|YP_003534173.1|	-	2.7e-05	24.0	0.0	0.0059	16.4	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|292654276|ref|YP_003534173.1|	-	0.00014	21.4	0.0	0.12	11.8	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|292654276|ref|YP_003534173.1|	-	0.00022	20.8	0.0	0.00062	19.4	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|292654276|ref|YP_003534173.1|	-	0.00087	18.9	0.1	1.3	8.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|292654276|ref|YP_003534173.1|	-	0.001	19.2	0.0	0.0044	17.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292654276|ref|YP_003534173.1|	-	0.0019	17.6	1.0	0.082	12.2	0.0	3.3	4	0	0	4	4	4	1	AAA	domain
AAA_10	PF12846.2	gi|292654276|ref|YP_003534173.1|	-	0.011	15.1	0.1	2.1	7.7	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.1	gi|292654276|ref|YP_003534173.1|	-	0.011	15.6	0.0	0.052	13.5	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF2075	PF09848.4	gi|292654276|ref|YP_003534173.1|	-	0.018	14.0	0.1	0.23	10.4	0.0	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DXP_redisom_C	PF08436.7	gi|292654276|ref|YP_003534173.1|	-	0.022	14.6	0.0	0.052	13.4	0.0	1.5	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal
IstB_IS21	PF01695.12	gi|292654276|ref|YP_003534173.1|	-	0.023	14.1	0.0	0.046	13.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
PhoH	PF02562.11	gi|292654276|ref|YP_003534173.1|	-	0.04	13.1	0.0	0.076	12.2	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
AAA	PF00004.24	gi|292654276|ref|YP_003534173.1|	-	0.083	13.0	0.0	0.73	10.0	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|292654276|ref|YP_003534173.1|	-	0.099	13.4	0.2	5.1	7.9	0.0	3.1	2	1	1	3	3	3	0	AAA	domain
DNA_ligase_IV	PF11411.3	gi|292654276|ref|YP_003534173.1|	-	0.15	11.8	0.5	0.41	10.4	0.3	1.7	1	0	0	1	1	1	0	DNA	ligase	IV
UPF0175	PF03683.8	gi|292654277|ref|YP_003534174.1|	-	3.7e-07	29.5	0.0	4.3e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
HTH_psq	PF05225.11	gi|292654277|ref|YP_003534174.1|	-	0.079	12.5	0.3	0.84	9.2	0.2	2.2	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
NMD3	PF04981.8	gi|292654278|ref|YP_003534175.1|	-	3.8e-68	229.1	0.0	4.6e-68	228.8	0.0	1.1	1	0	0	1	1	1	1	NMD3	family
DZR	PF12773.2	gi|292654278|ref|YP_003534175.1|	-	0.0012	18.6	6.2	0.037	13.8	2.7	3.0	2	1	1	3	3	3	1	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|292654278|ref|YP_003534175.1|	-	0.0019	17.8	14.2	1.8	8.3	2.0	3.9	3	0	0	3	3	3	3	Nudix	N-terminal
GFA	PF04828.9	gi|292654278|ref|YP_003534175.1|	-	0.0048	16.7	3.1	2.9	7.9	0.0	3.3	2	1	0	3	3	3	2	Glutathione-dependent	formaldehyde-activating	enzyme
FYVE	PF01363.16	gi|292654278|ref|YP_003534175.1|	-	0.014	15.2	0.3	0.014	15.2	0.2	2.4	2	1	0	2	2	2	0	FYVE	zinc	finger
zf-ribbon_3	PF13248.1	gi|292654278|ref|YP_003534175.1|	-	0.081	12.1	8.1	1.6	8.0	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|292654278|ref|YP_003534175.1|	-	0.13	11.8	6.0	3.5	7.2	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-dskA_traR	PF01258.12	gi|292654278|ref|YP_003534175.1|	-	0.17	11.6	0.3	0.17	11.6	0.2	3.4	4	0	0	4	4	4	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Rpr2	PF04032.11	gi|292654278|ref|YP_003534175.1|	-	0.24	11.3	1.3	6.7	6.6	0.0	3.0	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-TFIIB	PF13453.1	gi|292654278|ref|YP_003534175.1|	-	0.72	9.0	8.9	2.4	7.4	1.7	3.3	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
zf-NADH-PPase	PF09297.6	gi|292654278|ref|YP_003534175.1|	-	1.8	8.1	12.6	0.99	8.9	0.3	3.2	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Pribosyltran	PF00156.22	gi|292654279|ref|YP_003534176.1|	-	1.4e-27	95.9	0.5	2.3e-27	95.2	0.3	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|292654279|ref|YP_003534176.1|	-	0.0054	15.9	0.0	0.0087	15.2	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|292654279|ref|YP_003534176.1|	-	0.007	15.6	0.0	0.065	12.5	0.0	2.0	2	0	0	2	2	2	1	Phosphoribosyl	transferase
Peptidase_M48	PF01435.13	gi|292654280|ref|YP_003534177.1|	-	2.1e-40	138.7	0.0	2.9e-40	138.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|292654280|ref|YP_003534177.1|	-	1e-07	31.2	0.0	8.3e-06	24.9	0.0	2.2	2	0	0	2	2	2	2	BlaR1	peptidase	M56
Peptidase_MA_2	PF13485.1	gi|292654280|ref|YP_003534177.1|	-	0.094	12.7	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DUF3007	PF11460.3	gi|292654280|ref|YP_003534177.1|	-	0.098	12.7	0.4	0.27	11.3	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
Flu_M2	PF00599.12	gi|292654280|ref|YP_003534177.1|	-	0.15	11.8	0.5	0.96	9.2	0.0	2.3	2	0	0	2	2	2	0	Influenza	Matrix	protein	(M2)
Tic20	PF09685.5	gi|292654280|ref|YP_003534177.1|	-	0.99	9.4	12.1	1.7	8.6	0.4	2.2	2	0	0	2	2	2	0	Tic20-like	protein
Rad51	PF08423.6	gi|292654282|ref|YP_003534179.1|	-	1.2e-77	260.3	0.0	2.2e-46	157.8	0.0	2.1	2	0	0	2	2	2	2	Rad51
HHH_5	PF14520.1	gi|292654282|ref|YP_003534179.1|	-	7e-12	45.3	0.0	2.2e-11	43.7	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
AAA_25	PF13481.1	gi|292654282|ref|YP_003534179.1|	-	1.4e-08	34.4	0.0	2.5e-08	33.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
HHH	PF00633.18	gi|292654282|ref|YP_003534179.1|	-	2.6e-06	26.7	0.1	5.7e-05	22.5	0.0	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
RecA	PF00154.16	gi|292654282|ref|YP_003534179.1|	-	3.8e-06	26.1	0.0	0.0018	17.3	0.0	2.2	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH_2	PF12826.2	gi|292654282|ref|YP_003534179.1|	-	0.00036	20.3	0.0	0.0011	18.7	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
KaiC	PF06745.8	gi|292654282|ref|YP_003534179.1|	-	0.00038	19.6	0.2	0.0007	18.7	0.2	1.8	1	1	0	1	1	1	1	KaiC
Cdd1	PF11731.3	gi|292654282|ref|YP_003534179.1|	-	0.0018	18.1	0.0	0.0068	16.3	0.0	1.9	2	0	0	2	2	2	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.4	gi|292654282|ref|YP_003534179.1|	-	0.002	17.6	0.0	0.062	12.8	0.0	2.9	1	1	1	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
IMS_HHH	PF11798.3	gi|292654282|ref|YP_003534179.1|	-	0.044	13.8	0.0	0.23	11.5	0.0	2.2	2	0	0	2	2	2	0	IMS	family	HHH	motif
AAA_22	PF13401.1	gi|292654282|ref|YP_003534179.1|	-	0.071	13.2	0.2	0.31	11.1	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
DUF4332	PF14229.1	gi|292654282|ref|YP_003534179.1|	-	0.1	12.5	0.0	0.31	11.0	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
DUF3898	PF13037.1	gi|292654282|ref|YP_003534179.1|	-	0.12	12.2	0.0	0.25	11.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3898)
HHH_8	PF14716.1	gi|292654282|ref|YP_003534179.1|	-	0.12	12.5	0.0	0.45	10.7	0.0	2.0	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
Pyr_redox_2	PF07992.9	gi|292654283|ref|YP_003534180.1|	-	2.9e-15	56.7	0.0	3.9e-15	56.2	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|292654283|ref|YP_003534180.1|	-	0.002	17.8	2.3	0.57	9.9	0.1	2.8	3	0	0	3	3	3	2	FAD-NAD(P)-binding
DUF1641	PF07849.6	gi|292654284|ref|YP_003534181.1|	-	3.9e-11	42.3	0.7	1.9e-10	40.1	0.1	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1641)
NifU_N	PF01592.11	gi|292654285|ref|YP_003534182.1|	-	3.9e-27	94.7	0.1	4.4e-27	94.5	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
FluMu_gp41	PF10109.4	gi|292654285|ref|YP_003534182.1|	-	0.0025	17.6	0.1	0.0047	16.8	0.0	1.4	1	0	0	1	1	1	1	Mu-like	prophage	FluMu	protein	gp41
HCBP_related	PF06594.6	gi|292654285|ref|YP_003534182.1|	-	0.017	14.7	0.0	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	Haemolysin-type	calcium	binding	protein	related	domain
SufE	PF02657.10	gi|292654285|ref|YP_003534182.1|	-	0.057	13.0	0.0	0.063	12.9	0.0	1.2	1	0	0	1	1	1	0	Fe-S	metabolism	associated	domain
MS_channel	PF00924.13	gi|292654286|ref|YP_003534183.1|	-	1.7e-15	56.9	0.2	2.9e-15	56.1	0.1	1.4	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Aminotran_5	PF00266.14	gi|292654287|ref|YP_003534184.1|	-	1.3e-146	488.1	0.0	1.7e-146	487.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|292654287|ref|YP_003534184.1|	-	1e-12	47.7	0.4	1.8e-12	46.9	0.2	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|292654287|ref|YP_003534184.1|	-	4.2e-11	42.3	0.0	1.1e-09	37.7	0.0	2.0	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|292654287|ref|YP_003534184.1|	-	1e-07	31.4	0.0	1.3e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|292654287|ref|YP_003534184.1|	-	2.6e-05	22.6	0.0	4.7e-05	21.8	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.14	gi|292654287|ref|YP_003534184.1|	-	0.00014	20.4	0.0	0.00025	19.6	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
SelA	PF03841.8	gi|292654287|ref|YP_003534184.1|	-	0.058	12.1	0.0	0.11	11.2	0.0	1.3	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
HATPase_c	PF02518.21	gi|292654288|ref|YP_003534185.1|	-	7.9e-17	60.9	0.3	1.5e-16	60.0	0.2	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292654288|ref|YP_003534185.1|	-	2.5e-11	43.4	1.7	4.9e-11	42.4	1.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|292654288|ref|YP_003534185.1|	-	8.5e-07	28.9	0.8	1.9e-06	27.9	0.1	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|292654288|ref|YP_003534185.1|	-	3.3e-06	27.4	0.0	5.7e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292654288|ref|YP_003534185.1|	-	0.0028	17.4	0.3	0.0082	15.9	0.1	1.9	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|292654288|ref|YP_003534185.1|	-	0.0085	15.8	0.0	0.11	12.2	0.0	2.4	2	0	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.1	gi|292654288|ref|YP_003534185.1|	-	0.022	14.3	0.0	0.11	12.2	0.0	2.0	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CagA	PF03507.8	gi|292654288|ref|YP_003534185.1|	-	0.16	11.8	0.1	0.61	9.9	0.0	1.8	2	0	0	2	2	2	0	CagA	exotoxin
DUF424	PF04242.8	gi|292654289|ref|YP_003534186.1|	-	1.8e-26	91.9	0.0	2e-26	91.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Plectin	PF00681.15	gi|292654289|ref|YP_003534186.1|	-	0.089	12.3	0.1	0.17	11.4	0.0	1.5	1	1	0	1	1	1	0	Plectin	repeat
TPR_11	PF13414.1	gi|292654290|ref|YP_003534187.1|	-	6.2e-36	121.8	23.2	1.5e-14	53.3	1.8	3.3	1	1	3	4	4	4	4	TPR	repeat
TPR_2	PF07719.12	gi|292654290|ref|YP_003534187.1|	-	2.4e-24	83.2	11.0	4.1e-06	26.3	0.2	5.2	5	0	0	5	5	5	5	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|292654290|ref|YP_003534187.1|	-	1.1e-23	81.7	5.5	3.8e-07	29.4	0.0	5.1	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|292654290|ref|YP_003534187.1|	-	7.1e-19	67.5	28.6	2.6e-09	36.8	3.1	3.5	1	1	3	4	4	4	4	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|292654290|ref|YP_003534187.1|	-	2.9e-18	66.0	20.1	2.7e-10	40.6	1.5	3.2	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|292654290|ref|YP_003534187.1|	-	3.1e-16	57.8	0.2	0.00087	18.9	0.0	5.1	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|292654290|ref|YP_003534187.1|	-	1.3e-12	47.1	21.9	2.5e-06	27.6	1.4	5.2	1	1	4	5	5	5	4	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|292654290|ref|YP_003534187.1|	-	2.8e-12	45.8	5.4	0.00016	21.6	0.0	4.8	5	0	0	5	5	4	2	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|292654290|ref|YP_003534187.1|	-	2.8e-09	36.6	12.4	0.00028	20.6	2.4	3.7	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|292654290|ref|YP_003534187.1|	-	3.4e-09	35.8	11.3	0.00017	21.1	0.1	5.2	5	1	0	5	5	5	2	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|292654290|ref|YP_003534187.1|	-	2e-07	31.0	8.2	0.44	11.1	0.0	5.2	5	0	0	5	5	5	2	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|292654290|ref|YP_003534187.1|	-	3.4e-07	30.5	10.9	0.0033	17.7	1.1	3.9	1	1	3	4	4	4	4	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|292654290|ref|YP_003534187.1|	-	5.4e-06	26.4	0.0	0.23	11.6	0.0	2.7	1	1	2	3	3	3	2	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_10	PF13374.1	gi|292654290|ref|YP_003534187.1|	-	2.4e-05	24.0	24.9	0.0018	18.1	1.2	4.6	5	0	0	5	5	4	2	Tetratricopeptide	repeat
TPR_4	PF07721.9	gi|292654290|ref|YP_003534187.1|	-	0.0023	18.1	3.6	0.0023	18.1	2.5	4.5	4	1	0	4	4	4	1	Tetratricopeptide	repeat
YfiO	PF13525.1	gi|292654290|ref|YP_003534187.1|	-	0.0084	15.5	0.1	0.014	14.8	0.1	1.5	1	0	0	1	1	1	1	Outer	membrane	lipoprotein
TPR_20	PF14561.1	gi|292654290|ref|YP_003534187.1|	-	0.014	15.4	8.5	0.15	12.2	0.1	3.4	1	1	2	3	3	3	0	Tetratricopeptide	repeat
DUF3856	PF12968.2	gi|292654290|ref|YP_003534187.1|	-	0.022	14.5	11.7	1.2	8.9	0.6	4.0	1	1	2	3	3	3	0	Domain	of	Unknown	Function	(DUF3856)
Apc5	PF12862.2	gi|292654290|ref|YP_003534187.1|	-	0.029	14.2	0.2	5.1	6.9	0.1	3.0	1	1	0	1	1	1	0	Anaphase-promoting	complex	subunit	5
FAT	PF02259.18	gi|292654290|ref|YP_003534187.1|	-	0.053	12.5	0.5	0.38	9.6	0.2	2.1	1	1	0	1	1	1	0	FAT	domain
TPR_5	PF12688.2	gi|292654290|ref|YP_003534187.1|	-	0.24	11.4	4.0	2	8.4	0.2	2.4	2	1	0	2	2	2	0	Tetratrico	peptide	repeat
MIT	PF04212.13	gi|292654290|ref|YP_003534187.1|	-	0.67	9.8	5.5	10	6.1	0.1	3.2	3	0	0	3	3	3	0	MIT	(microtubule	interacting	and	transport)	domain
DUF3366	PF11846.3	gi|292654290|ref|YP_003534187.1|	-	1.8	8.4	4.1	3	7.6	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3366)
His_Phos_1	PF00300.17	gi|292654291|ref|YP_003534188.1|	-	4.2e-18	65.9	0.0	5.4e-18	65.5	0.0	1.1	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
EspB	PF05802.6	gi|292654291|ref|YP_003534188.1|	-	0.18	10.6	1.3	0.26	10.2	0.9	1.2	1	0	0	1	1	1	0	Enterobacterial	EspB	protein
LigT_PEase	PF02834.11	gi|292654292|ref|YP_003534189.1|	-	3.6e-25	87.7	0.0	2.4e-13	49.8	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|292654292|ref|YP_003534189.1|	-	2.2e-18	66.4	0.0	2.5e-18	66.2	0.0	1.0	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|292654292|ref|YP_003534189.1|	-	2.2e-07	30.8	0.0	2.4e-07	30.6	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
Ribosomal_L39	PF00832.15	gi|292654293|ref|YP_003534190.1|	-	8.5e-21	73.1	8.6	1.1e-20	72.8	6.0	1.2	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ribosomal_L31e	PF01198.14	gi|292654294|ref|YP_003534191.1|	-	2.9e-25	87.7	0.2	3.1e-25	87.6	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Linker_histone	PF00538.14	gi|292654294|ref|YP_003534191.1|	-	0.022	14.8	0.0	0.03	14.4	0.0	1.2	1	0	0	1	1	1	0	linker	histone	H1	and	H5	family
Ribosomal_S24e	PF01282.14	gi|292654294|ref|YP_003534191.1|	-	0.032	14.0	0.0	0.053	13.3	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S24e
eIF-6	PF01912.13	gi|292654295|ref|YP_003534192.1|	-	9.5e-69	230.4	0.0	1.1e-68	230.2	0.0	1.0	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L18ae	PF01775.12	gi|292654296|ref|YP_003534193.1|	-	1.6e-07	31.2	0.0	1.6e-07	31.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
Prefoldin	PF02996.12	gi|292654297|ref|YP_003534194.1|	-	1.1e-22	79.8	13.6	1.1e-22	79.8	9.4	2.2	1	1	0	1	1	1	1	Prefoldin	subunit
Spc7	PF08317.6	gi|292654297|ref|YP_003534194.1|	-	4.4e-05	22.2	16.4	0.0067	15.1	1.4	2.0	2	0	0	2	2	2	2	Spc7	kinetochore	protein
DivIC	PF04977.10	gi|292654297|ref|YP_003534194.1|	-	5.1e-05	22.6	6.4	5.1e-05	22.6	4.5	3.2	2	1	1	3	3	2	2	Septum	formation	initiator
Prefoldin_2	PF01920.15	gi|292654297|ref|YP_003534194.1|	-	5.6e-05	22.8	18.2	0.00063	19.4	1.3	3.2	2	1	1	3	3	2	2	Prefoldin	subunit
APG6	PF04111.7	gi|292654297|ref|YP_003534194.1|	-	0.00017	20.7	21.3	0.025	13.6	7.3	2.0	2	0	0	2	2	2	2	Autophagy	protein	Apg6
Ax_dynein_light	PF10211.4	gi|292654297|ref|YP_003534194.1|	-	0.00033	20.5	16.4	0.063	13.1	5.3	2.1	2	0	0	2	2	2	2	Axonemal	dynein	light	chain
FlxA	PF14282.1	gi|292654297|ref|YP_003534194.1|	-	0.00035	20.5	28.9	0.0085	16.0	12.6	2.3	2	0	0	2	2	2	2	FlxA-like	protein
CENP-F_leu_zip	PF10473.4	gi|292654297|ref|YP_003534194.1|	-	0.00038	20.3	19.6	0.016	15.0	1.6	2.2	2	0	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
HCMV_UL139	PF12507.3	gi|292654297|ref|YP_003534194.1|	-	0.00093	19.3	6.6	0.019	15.1	2.6	2.2	2	0	0	2	2	2	1	Human	Cytomegalovirus	UL139	protein
DUF869	PF05911.6	gi|292654297|ref|YP_003534194.1|	-	0.0011	17.3	10.1	0.0013	17.0	7.0	1.0	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
Filament	PF00038.16	gi|292654297|ref|YP_003534194.1|	-	0.0012	18.3	22.0	0.064	12.7	8.6	2.0	2	0	0	2	2	2	2	Intermediate	filament	protein
Spectrin	PF00435.16	gi|292654297|ref|YP_003534194.1|	-	0.0013	18.9	19.0	0.1	12.8	1.3	2.4	2	0	0	2	2	2	2	Spectrin	repeat
DUF4337	PF14235.1	gi|292654297|ref|YP_003534194.1|	-	0.0016	18.3	15.8	0.018	14.8	6.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4337)
TMF_TATA_bd	PF12325.3	gi|292654297|ref|YP_003534194.1|	-	0.0023	17.6	26.2	0.0085	15.8	3.3	2.2	1	1	0	2	2	2	1	TATA	element	modulatory	factor	1	TATA	binding
ATP-synt_D	PF01813.12	gi|292654297|ref|YP_003534194.1|	-	0.0035	16.9	7.3	0.023	14.2	2.9	2.2	2	0	0	2	2	2	1	ATP	synthase	subunit	D
Tropomyosin_1	PF12718.2	gi|292654297|ref|YP_003534194.1|	-	0.0042	16.9	28.3	0.039	13.7	3.9	2.4	2	1	0	2	2	2	1	Tropomyosin	like
IncA	PF04156.9	gi|292654297|ref|YP_003534194.1|	-	0.0043	16.6	33.1	0.0092	15.5	9.4	2.3	1	1	1	2	2	2	1	IncA	protein
FliD_C	PF07195.7	gi|292654297|ref|YP_003534194.1|	-	0.0046	16.2	9.5	0.032	13.5	3.1	2.1	2	0	0	2	2	2	1	Flagellar	hook-associated	protein	2	C-terminus
DUF342	PF03961.8	gi|292654297|ref|YP_003534194.1|	-	0.0047	15.3	12.9	0.11	10.8	3.8	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF342)
Reo_sigmaC	PF04582.7	gi|292654297|ref|YP_003534194.1|	-	0.0058	15.8	6.7	0.02	14.0	0.4	2.0	1	1	1	2	2	2	1	Reovirus	sigma	C	capsid	protein
GAS	PF13851.1	gi|292654297|ref|YP_003534194.1|	-	0.006	15.7	15.9	0.06	12.5	0.7	2.1	2	0	0	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
DUF2353	PF09789.4	gi|292654297|ref|YP_003534194.1|	-	0.007	15.6	12.3	0.013	14.8	8.5	1.3	1	1	0	1	1	1	1	Uncharacterized	coiled-coil	protein	(DUF2353)
ATG16	PF08614.6	gi|292654297|ref|YP_003534194.1|	-	0.009	15.8	15.7	0.029	14.1	1.1	2.3	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
Seryl_tRNA_N	PF02403.17	gi|292654297|ref|YP_003534194.1|	-	0.0091	15.9	16.6	0.17	11.9	1.0	2.5	2	0	0	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
DivIVA	PF05103.8	gi|292654297|ref|YP_003534194.1|	-	0.011	15.7	22.4	0.19	11.8	2.4	2.1	2	0	0	2	2	2	0	DivIVA	protein
AAA_27	PF13514.1	gi|292654297|ref|YP_003534194.1|	-	0.011	13.4	18.0	0.017	12.8	12.5	1.2	1	0	0	1	1	1	0	AAA	domain
DUF812	PF05667.6	gi|292654297|ref|YP_003534194.1|	-	0.012	14.2	19.8	0.035	12.6	1.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
HrpB7	PF09486.5	gi|292654297|ref|YP_003534194.1|	-	0.014	15.3	16.5	0.15	11.9	1.1	2.2	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
TMF_DNA_bd	PF12329.3	gi|292654297|ref|YP_003534194.1|	-	0.021	14.6	26.2	0.041	13.6	4.6	2.9	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
CorA	PF01544.13	gi|292654297|ref|YP_003534194.1|	-	0.023	13.7	10.0	0.35	9.8	2.0	2.1	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
NPV_P10	PF05531.7	gi|292654297|ref|YP_003534194.1|	-	0.024	14.8	19.7	0.23	11.7	0.4	2.7	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
LPP	PF04728.8	gi|292654297|ref|YP_003534194.1|	-	0.026	14.3	2.8	3.2	7.6	0.4	3.0	2	2	0	2	2	2	0	Lipoprotein	leucine-zipper
ERM	PF00769.14	gi|292654297|ref|YP_003534194.1|	-	0.027	13.9	19.9	0.47	9.9	0.8	2.2	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
Med4	PF10018.4	gi|292654297|ref|YP_003534194.1|	-	0.027	13.8	15.6	0.28	10.5	0.8	2.3	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
TBPIP	PF07106.8	gi|292654297|ref|YP_003534194.1|	-	0.029	13.9	23.6	0.22	11.0	3.9	2.1	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF4515	PF14988.1	gi|292654297|ref|YP_003534194.1|	-	0.03	13.9	17.9	0.054	13.1	1.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4515)
Mod_r	PF07200.8	gi|292654297|ref|YP_003534194.1|	-	0.032	14.1	14.7	0.6	10.0	3.2	2.3	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF2730	PF10805.3	gi|292654297|ref|YP_003534194.1|	-	0.035	13.8	5.8	1.1	8.9	0.3	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
DUF4201	PF13870.1	gi|292654297|ref|YP_003534194.1|	-	0.038	13.4	13.9	0.87	9.0	0.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
TSC22	PF01166.13	gi|292654297|ref|YP_003534194.1|	-	0.04	13.8	5.0	0.04	13.8	3.5	3.0	2	1	1	3	3	2	0	TSC-22/dip/bun	family
Fib_alpha	PF08702.5	gi|292654297|ref|YP_003534194.1|	-	0.043	13.9	14.5	0.98	9.5	0.3	2.6	2	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Dor1	PF04124.7	gi|292654297|ref|YP_003534194.1|	-	0.045	12.2	9.5	0.1	11.0	1.9	2.1	2	0	0	2	2	2	0	Dor1-like	family
DUF603	PF04645.7	gi|292654297|ref|YP_003534194.1|	-	0.051	13.5	4.5	2.9	7.7	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF603
Fmp27_WPPW	PF10359.4	gi|292654297|ref|YP_003534194.1|	-	0.056	11.8	10.6	0.97	7.7	0.2	2.0	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Tropomyosin	PF00261.15	gi|292654297|ref|YP_003534194.1|	-	0.057	12.5	19.8	0.19	10.7	6.8	2.1	2	0	0	2	2	2	0	Tropomyosin
FlaC_arch	PF05377.6	gi|292654297|ref|YP_003534194.1|	-	0.064	13.1	17.7	0.6	10.0	3.0	4.0	3	2	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
Hemerythrin	PF01814.18	gi|292654297|ref|YP_003534194.1|	-	0.066	13.3	6.8	1.1	9.4	0.2	2.5	2	1	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
CCDC155	PF14662.1	gi|292654297|ref|YP_003534194.1|	-	0.066	12.7	31.0	0.79	9.2	13.5	2.1	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
Phage_GP20	PF06810.6	gi|292654297|ref|YP_003534194.1|	-	0.069	12.5	24.1	0.23	10.8	2.5	2.6	2	1	0	2	2	2	0	Phage	minor	structural	protein	GP20
DUF4140	PF13600.1	gi|292654297|ref|YP_003534194.1|	-	0.076	13.4	23.5	0.097	13.1	2.8	2.9	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
bZIP_1	PF00170.16	gi|292654297|ref|YP_003534194.1|	-	0.076	12.9	13.9	0.48	10.4	2.3	2.7	2	1	0	2	2	2	0	bZIP	transcription	factor
DUF724	PF05266.9	gi|292654297|ref|YP_003534194.1|	-	0.082	12.5	14.3	0.85	9.2	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
COG2	PF06148.6	gi|292654297|ref|YP_003534194.1|	-	0.087	12.6	16.3	0.31	10.9	1.5	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Mnd1	PF03962.10	gi|292654297|ref|YP_003534194.1|	-	0.096	12.3	24.7	0.3	10.7	2.3	2.1	1	1	0	2	2	2	0	Mnd1	family
FliJ	PF02050.11	gi|292654297|ref|YP_003534194.1|	-	0.11	12.6	28.3	0.086	12.8	1.6	2.9	1	1	0	2	2	2	0	Flagellar	FliJ	protein
Nsp1_C	PF05064.8	gi|292654297|ref|YP_003534194.1|	-	0.11	12.1	19.6	0.43	10.2	7.1	2.3	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
DUF4618	PF15397.1	gi|292654297|ref|YP_003534194.1|	-	0.13	11.5	16.6	0.24	10.6	0.7	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
GrpE	PF01025.14	gi|292654297|ref|YP_003534194.1|	-	0.14	11.7	18.9	0.74	9.3	1.2	2.3	2	1	0	2	2	2	0	GrpE
DUF607	PF04678.8	gi|292654297|ref|YP_003534194.1|	-	0.14	12.1	11.3	0.81	9.5	3.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
TPR_MLP1_2	PF07926.7	gi|292654297|ref|YP_003534194.1|	-	0.14	11.9	25.0	0.11	12.1	1.9	2.4	2	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
AAA_13	PF13166.1	gi|292654297|ref|YP_003534194.1|	-	0.15	10.4	16.7	0.93	7.8	11.6	1.8	1	1	0	1	1	1	0	AAA	domain
Laminin_II	PF06009.7	gi|292654297|ref|YP_003534194.1|	-	0.19	11.4	13.9	0.2	11.4	1.1	2.2	1	1	0	2	2	2	0	Laminin	Domain	II
Syntaxin-6_N	PF09177.6	gi|292654297|ref|YP_003534194.1|	-	0.2	12.0	14.5	1.7	9.1	3.6	2.4	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Spc24	PF08286.6	gi|292654297|ref|YP_003534194.1|	-	0.22	11.2	25.1	0.074	12.7	3.2	2.5	1	1	0	2	2	2	0	Spc24	subunit	of	Ndc80
Cluap1	PF10234.4	gi|292654297|ref|YP_003534194.1|	-	0.28	10.3	15.7	0.53	9.4	5.6	2.1	2	0	0	2	2	2	0	Clusterin-associated	protein-1
DUF1664	PF07889.7	gi|292654297|ref|YP_003534194.1|	-	0.28	10.9	14.5	1.7	8.4	1.6	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
HemX	PF04375.9	gi|292654297|ref|YP_003534194.1|	-	0.28	9.7	16.9	0.56	8.7	0.5	2.2	2	0	0	2	2	2	0	HemX
Prefoldin_3	PF13758.1	gi|292654297|ref|YP_003534194.1|	-	0.31	10.8	12.4	0.81	9.4	5.7	2.7	1	1	0	1	1	1	0	Prefoldin	subunit
Tnp_P_element	PF12017.3	gi|292654297|ref|YP_003534194.1|	-	0.32	10.2	9.1	4.7	6.3	0.1	2.2	1	1	1	2	2	2	0	Transposase	protein
DUF972	PF06156.8	gi|292654297|ref|YP_003534194.1|	-	0.32	11.3	20.1	0.83	10.0	2.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
CK2S	PF15011.1	gi|292654297|ref|YP_003534194.1|	-	0.32	10.7	12.8	2.5	7.8	0.6	2.3	1	1	0	2	2	2	0	Casein	Kinase	2	substrate
ADIP	PF11559.3	gi|292654297|ref|YP_003534194.1|	-	0.32	10.8	20.5	1.3	8.9	1.5	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF1980	PF09323.5	gi|292654297|ref|YP_003534194.1|	-	0.45	10.2	2.0	0.81	9.4	1.4	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1980)
Rootletin	PF15035.1	gi|292654297|ref|YP_003534194.1|	-	0.52	10.2	17.7	2.4	8.0	6.3	2.2	2	0	0	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
DUF4407	PF14362.1	gi|292654297|ref|YP_003534194.1|	-	0.53	9.1	20.5	16	4.3	14.2	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Nup54	PF13874.1	gi|292654297|ref|YP_003534194.1|	-	0.57	9.8	14.8	0.69	9.5	5.3	2.1	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
HALZ	PF02183.13	gi|292654297|ref|YP_003534194.1|	-	0.61	9.8	13.1	3	7.6	1.0	3.6	3	2	1	4	4	3	0	Homeobox	associated	leucine	zipper
DUF1024	PF06260.7	gi|292654297|ref|YP_003534194.1|	-	0.63	10.2	13.5	0.14	12.2	0.8	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1024)
DUF4446	PF14584.1	gi|292654297|ref|YP_003534194.1|	-	0.66	9.7	12.0	3.4	7.4	4.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
IFT57	PF10498.4	gi|292654297|ref|YP_003534194.1|	-	0.7	8.5	16.0	0.58	8.8	0.6	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
HalX	PF08663.5	gi|292654297|ref|YP_003534194.1|	-	0.7	9.9	15.5	0.21	11.5	2.6	3.1	2	1	1	3	3	2	0	HalX	domain
DUF3552	PF12072.3	gi|292654297|ref|YP_003534194.1|	-	0.79	8.9	23.2	0.51	9.5	7.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF1515	PF07439.6	gi|292654297|ref|YP_003534194.1|	-	0.79	9.5	12.1	0.19	11.5	1.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Cortex-I_coil	PF09304.5	gi|292654297|ref|YP_003534194.1|	-	0.9	9.6	16.5	3.6	7.6	5.1	2.2	2	0	0	2	2	2	0	Cortexillin	I,	coiled	coil
DUF948	PF06103.6	gi|292654297|ref|YP_003534194.1|	-	0.98	9.3	11.5	2.3	8.1	0.6	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
BLOC1_2	PF10046.4	gi|292654297|ref|YP_003534194.1|	-	1.1	9.4	22.5	0.052	13.6	1.9	3.0	2	1	1	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Flu_NS2	PF00601.14	gi|292654297|ref|YP_003534194.1|	-	1.1	9.5	6.7	0.81	9.9	1.4	2.2	2	0	0	2	2	2	0	Influenza	non-structural	protein	(NS2)
DUF3373	PF11853.3	gi|292654297|ref|YP_003534194.1|	-	1.2	7.5	20.6	0.075	11.5	1.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3373)
CASP_C	PF08172.7	gi|292654297|ref|YP_003534194.1|	-	1.4	7.9	12.5	0.48	9.4	0.4	2.1	2	0	0	2	2	2	0	CASP	C	terminal
Allexi_40kDa	PF05549.6	gi|292654297|ref|YP_003534194.1|	-	1.4	8.1	11.8	1.8	7.7	2.9	2.0	1	1	0	2	2	2	0	Allexivirus	40kDa	protein
DUF3166	PF11365.3	gi|292654297|ref|YP_003534194.1|	-	1.6	9.1	10.1	1.5	9.2	0.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3166)
GlutR_dimer	PF00745.15	gi|292654297|ref|YP_003534194.1|	-	1.7	8.6	13.2	0.096	12.6	3.8	2.2	2	0	0	2	2	2	0	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Muted	PF14942.1	gi|292654297|ref|YP_003534194.1|	-	1.8	8.4	12.9	3.1	7.6	0.5	2.3	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
DUF4164	PF13747.1	gi|292654297|ref|YP_003534194.1|	-	1.9	8.6	19.4	0.6	10.2	2.8	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Med8	PF10232.4	gi|292654297|ref|YP_003534194.1|	-	1.9	7.9	14.8	4.9	6.5	5.5	2.1	2	0	0	2	2	2	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
TP_methylase	PF00590.15	gi|292654297|ref|YP_003534194.1|	-	2	8.0	5.2	0.45	10.1	0.1	1.9	1	1	1	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Tektin	PF03148.9	gi|292654297|ref|YP_003534194.1|	-	2.1	6.7	23.0	0.57	8.6	1.9	2.9	2	1	1	3	3	3	0	Tektin	family
DUF2443	PF10398.4	gi|292654297|ref|YP_003534194.1|	-	2.2	8.1	5.0	2.6	7.9	0.3	2.8	2	2	1	3	3	2	0	Protein	of	unknown	function	(DUF2443)
DASH_Spc19	PF08287.6	gi|292654297|ref|YP_003534194.1|	-	2.2	7.8	11.0	10	5.7	3.7	2.3	2	0	0	2	2	2	0	Spc19
Sas10_Utp3	PF04000.10	gi|292654297|ref|YP_003534194.1|	-	2.3	8.4	10.5	2	8.6	1.2	2.4	2	0	0	2	2	2	0	Sas10/Utp3/C1D	family
DUF4200	PF13863.1	gi|292654297|ref|YP_003534194.1|	-	2.4	8.1	31.0	0.41	10.5	2.9	3.1	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4200)
Phage_Mu_Gam	PF07352.7	gi|292654297|ref|YP_003534194.1|	-	2.9	7.4	15.8	1.3	8.4	4.3	2.4	2	1	0	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
LON	PF02190.11	gi|292654297|ref|YP_003534194.1|	-	3	7.4	5.6	9.8	5.7	3.9	1.9	1	1	0	1	1	1	0	ATP-dependent	protease	La	(LON)	domain
DUF2400	PF09674.5	gi|292654297|ref|YP_003534194.1|	-	3	7.4	6.1	6.9	6.2	0.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
FH2	PF02181.18	gi|292654297|ref|YP_003534194.1|	-	3.2	6.5	11.0	1.4	7.7	0.7	2.1	2	0	0	2	2	2	0	Formin	Homology	2	Domain
zf-CpG_bind_C	PF12269.3	gi|292654297|ref|YP_003534194.1|	-	3.4	7.0	11.7	1.6	8.1	4.2	2.0	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
Fzo_mitofusin	PF04799.8	gi|292654297|ref|YP_003534194.1|	-	3.5	6.9	12.8	2	7.7	1.1	2.4	2	0	0	2	2	2	0	fzo-like	conserved	region
Syntaxin	PF00804.20	gi|292654297|ref|YP_003534194.1|	-	3.6	7.8	20.4	10	6.3	3.9	2.4	1	1	1	2	2	2	0	Syntaxin
DUF2570	PF10828.3	gi|292654297|ref|YP_003534194.1|	-	3.7	7.1	18.6	2.3	7.8	8.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2570)
YlqD	PF11068.3	gi|292654297|ref|YP_003534194.1|	-	3.8	7.5	30.4	0.69	9.9	3.4	2.9	2	2	0	2	2	2	0	YlqD	protein
DUF3450	PF11932.3	gi|292654297|ref|YP_003534194.1|	-	3.9	6.6	31.3	1.5	8.0	3.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Uds1	PF15456.1	gi|292654297|ref|YP_003534194.1|	-	4.2	7.3	15.8	94	3.0	11.0	2.3	1	1	0	1	1	1	0	Up-regulated	During	Septation
Baculo_PEP_C	PF04513.7	gi|292654297|ref|YP_003534194.1|	-	4.7	7.0	14.3	0.5	10.2	1.3	2.2	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
EMP24_GP25L	PF01105.19	gi|292654297|ref|YP_003534194.1|	-	5.1	6.7	14.0	5.7	6.6	1.0	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
DUF2580	PF10824.3	gi|292654297|ref|YP_003534194.1|	-	5.5	7.4	9.8	4	7.8	4.0	2.6	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2580)
Cob_adeno_trans	PF01923.13	gi|292654297|ref|YP_003534194.1|	-	5.9	6.6	13.1	7.1	6.3	4.6	2.6	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
T2SM	PF04612.7	gi|292654297|ref|YP_003534194.1|	-	6.1	6.6	13.3	12	5.6	5.2	2.3	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
Vfa1	PF08432.5	gi|292654297|ref|YP_003534194.1|	-	6.2	6.8	13.7	4.4	7.2	5.0	2.1	2	0	0	2	2	2	0	AAA-ATPase	Vps4-associated	protein	1
DUF904	PF06005.7	gi|292654297|ref|YP_003534194.1|	-	6.3	7.1	28.1	5.8	7.2	5.3	2.7	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
CENP-Q	PF13094.1	gi|292654297|ref|YP_003534194.1|	-	6.5	6.7	23.7	3.3	7.7	7.1	2.4	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Occludin_ELL	PF07303.8	gi|292654297|ref|YP_003534194.1|	-	7.3	7.3	15.5	3	8.6	0.4	3.0	2	1	1	3	3	3	0	Occludin	homology	domain
SPX	PF03105.14	gi|292654297|ref|YP_003534194.1|	-	7.5	6.2	11.6	1.9e+02	1.6	8.0	2.0	1	1	0	1	1	1	0	SPX	domain
LUC7	PF03194.10	gi|292654297|ref|YP_003534194.1|	-	8.4	5.8	23.8	1.5	8.2	2.7	2.1	1	1	0	2	2	2	0	LUC7	N_terminus
Snapin_Pallidin	PF14712.1	gi|292654297|ref|YP_003534194.1|	-	8.6	6.7	21.3	2.7	8.3	1.1	2.8	2	1	0	2	2	2	0	Snapin/Pallidin
PRTP	PF01366.13	gi|292654297|ref|YP_003534194.1|	-	8.8	4.1	9.5	17	3.2	6.6	1.4	1	1	0	1	1	1	0	Herpesvirus	processing	and	transport	protein
SRP54	PF00448.17	gi|292654298|ref|YP_003534195.1|	-	9.6e-68	227.4	0.4	1.5e-67	226.9	0.3	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|292654298|ref|YP_003534195.1|	-	7.2e-16	58.0	2.1	9.8e-16	57.6	0.2	2.1	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.15	gi|292654298|ref|YP_003534195.1|	-	2.9e-05	23.7	0.0	4.9e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Adenylylsulphate	kinase
Thymidylate_kin	PF02223.12	gi|292654298|ref|YP_003534195.1|	-	6.4e-05	22.4	0.2	0.00058	19.2	0.1	2.3	2	0	0	2	2	2	1	Thymidylate	kinase
CbiA	PF01656.18	gi|292654298|ref|YP_003534195.1|	-	8.8e-05	21.9	1.6	8.8e-05	21.9	1.1	2.3	2	2	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|292654298|ref|YP_003534195.1|	-	0.00051	19.7	0.3	0.0013	18.4	0.2	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|292654298|ref|YP_003534195.1|	-	0.001	18.5	0.1	0.0025	17.2	0.1	1.6	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
KTI12	PF08433.5	gi|292654298|ref|YP_003534195.1|	-	0.0011	18.2	0.1	0.0027	16.9	0.0	1.6	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_17	PF13207.1	gi|292654298|ref|YP_003534195.1|	-	0.0011	19.7	0.1	0.0011	19.7	0.0	2.3	3	0	0	3	3	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292654298|ref|YP_003534195.1|	-	0.0013	17.9	0.1	0.0023	17.0	0.1	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_22	PF13401.1	gi|292654298|ref|YP_003534195.1|	-	0.0025	17.9	0.1	0.0077	16.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292654298|ref|YP_003534195.1|	-	0.0093	15.9	0.0	0.0093	15.9	0.0	2.9	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|292654298|ref|YP_003534195.1|	-	0.017	15.4	0.0	0.052	13.8	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|292654298|ref|YP_003534195.1|	-	0.018	15.0	0.4	0.018	15.0	0.3	2.7	3	1	0	3	3	2	0	AAA	domain
AAA_14	PF13173.1	gi|292654298|ref|YP_003534195.1|	-	0.02	14.8	0.0	0.044	13.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|292654298|ref|YP_003534195.1|	-	0.031	14.1	0.0	0.084	12.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|292654298|ref|YP_003534195.1|	-	0.04	13.6	1.3	0.055	13.1	0.3	1.7	2	0	0	2	2	2	0	NTPase
AAA	PF00004.24	gi|292654298|ref|YP_003534195.1|	-	0.048	13.8	0.6	0.16	12.1	0.1	2.2	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|292654298|ref|YP_003534195.1|	-	0.049	13.3	0.1	0.13	12.0	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
ATP_bind_1	PF03029.12	gi|292654298|ref|YP_003534195.1|	-	0.095	12.2	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_29	PF13555.1	gi|292654298|ref|YP_003534195.1|	-	0.12	11.9	0.0	0.28	10.7	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
6PF2K	PF01591.13	gi|292654298|ref|YP_003534195.1|	-	0.19	10.7	0.0	0.32	10.0	0.0	1.2	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_15	PF13175.1	gi|292654298|ref|YP_003534195.1|	-	0.24	10.4	0.0	0.32	9.9	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
HK97-gp10_like	PF04883.7	gi|292654298|ref|YP_003534195.1|	-	6.9	7.6	7.4	20	6.1	1.6	3.4	3	0	0	3	3	3	0	Bacteriophage	HK97-gp10,	putative	tail-component
LysE	PF01810.13	gi|292654299|ref|YP_003534196.1|	-	3.9e-34	117.5	6.8	4.7e-34	117.3	4.7	1.1	1	0	0	1	1	1	1	LysE	type	translocator
TerC	PF03741.11	gi|292654299|ref|YP_003534196.1|	-	0.17	11.3	0.1	0.17	11.3	0.1	1.9	2	0	0	2	2	2	0	Integral	membrane	protein	TerC	family
2-Hacid_dh_C	PF02826.14	gi|292654300|ref|YP_003534197.1|	-	4.6e-53	179.0	0.0	6.2e-53	178.5	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|292654300|ref|YP_003534197.1|	-	4.1e-16	58.6	0.0	5e-16	58.3	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.12	gi|292654300|ref|YP_003534197.1|	-	0.0067	16.8	0.1	0.12	12.8	0.0	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|292654300|ref|YP_003534197.1|	-	0.017	14.9	0.0	0.036	13.8	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|292654300|ref|YP_003534197.1|	-	0.032	13.9	0.1	0.66	9.6	0.0	2.7	2	1	1	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ThiF	PF00899.16	gi|292654300|ref|YP_003534197.1|	-	0.096	12.5	2.2	0.14	12.0	0.5	1.9	2	0	0	2	2	2	0	ThiF	family
SRP54	PF00448.17	gi|292654301|ref|YP_003534198.1|	-	5.5e-64	215.2	0.1	1.2e-63	214.1	0.1	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|292654301|ref|YP_003534198.1|	-	3.1e-29	101.2	5.2	3.1e-29	101.2	3.6	3.2	3	1	1	4	4	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|292654301|ref|YP_003534198.1|	-	3.4e-16	59.0	3.4	7.1e-16	58.0	0.3	2.8	3	0	0	3	3	3	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|292654301|ref|YP_003534198.1|	-	5e-05	22.7	0.2	0.00045	19.6	0.1	2.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|292654301|ref|YP_003534198.1|	-	0.00049	19.8	0.0	0.0013	18.4	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|292654301|ref|YP_003534198.1|	-	0.0011	18.4	0.3	0.0073	15.7	0.1	2.3	1	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292654301|ref|YP_003534198.1|	-	0.0047	16.0	0.0	0.017	14.2	0.0	1.9	2	0	0	2	2	2	1	Zeta	toxin
cobW	PF02492.14	gi|292654301|ref|YP_003534198.1|	-	0.0063	15.9	0.2	0.027	13.9	0.1	2.0	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArsA_ATPase	PF02374.10	gi|292654301|ref|YP_003534198.1|	-	0.008	15.2	0.1	0.008	15.2	0.1	2.9	3	0	0	3	3	3	1	Anion-transporting	ATPase
AAA_10	PF12846.2	gi|292654301|ref|YP_003534198.1|	-	0.014	14.8	1.5	0.021	14.2	1.1	1.5	1	1	0	1	1	1	0	AAA-like	domain
AAA_33	PF13671.1	gi|292654301|ref|YP_003534198.1|	-	0.016	15.1	0.0	0.036	13.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.15	gi|292654301|ref|YP_003534198.1|	-	0.02	14.5	0.0	0.043	13.4	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
SMC_N	PF02463.14	gi|292654301|ref|YP_003534198.1|	-	0.03	13.5	0.0	0.056	12.6	0.0	1.5	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
SSXT	PF05030.7	gi|292654301|ref|YP_003534198.1|	-	0.11	12.1	3.0	0.066	12.7	0.4	1.8	2	0	0	2	2	2	0	SSXT	protein	(N-terminal	region)
Thymidylate_kin	PF02223.12	gi|292654301|ref|YP_003534198.1|	-	0.11	11.8	0.4	0.58	9.5	0.0	2.3	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_22	PF13401.1	gi|292654301|ref|YP_003534198.1|	-	0.12	12.5	0.2	1.2	9.2	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
Mcm10	PF09332.6	gi|292654301|ref|YP_003534198.1|	-	0.16	11.2	0.7	0.26	10.5	0.0	1.6	2	0	0	2	2	2	0	Mcm10	replication	factor
AAA_18	PF13238.1	gi|292654301|ref|YP_003534198.1|	-	0.42	10.9	2.7	1	9.6	0.1	2.9	3	1	0	3	3	3	0	AAA	domain
IZUMO	PF15005.1	gi|292654301|ref|YP_003534198.1|	-	0.42	10.6	1.6	0.78	9.7	0.1	2.1	2	0	0	2	2	2	0	Izumo	sperm-egg	fusion
AAA_17	PF13207.1	gi|292654301|ref|YP_003534198.1|	-	0.57	11.0	2.3	1.8	9.3	0.7	2.5	2	1	0	2	2	1	0	AAA	domain
MgtE	PF01769.11	gi|292654302|ref|YP_003534199.1|	-	1.8e-16	60.6	6.7	1.8e-16	60.6	4.7	1.6	2	0	0	2	2	2	1	Divalent	cation	transporter
Peptidase_M50	PF02163.17	gi|292654302|ref|YP_003534199.1|	-	0.25	10.2	2.6	0.62	8.9	1.8	1.8	1	1	0	1	1	1	0	Peptidase	family	M50
MgtE	PF01769.11	gi|292654303|ref|YP_003534200.1|	-	8.6e-21	74.6	9.9	1.3e-20	74.0	6.9	1.3	1	0	0	1	1	1	1	Divalent	cation	transporter
Gate	PF07670.9	gi|292654304|ref|YP_003534201.1|	-	9.5e-10	38.3	13.3	3.5e-05	23.6	1.1	2.5	2	1	0	2	2	2	2	Nucleoside	recognition
VirB8	PF04335.8	gi|292654304|ref|YP_003534201.1|	-	0.0045	16.6	1.3	0.0045	16.6	0.9	3.0	3	0	0	3	3	3	1	VirB8	protein
RNA_binding	PF01877.12	gi|292654305|ref|YP_003534202.1|	-	2.1e-23	82.6	0.3	4.3e-23	81.5	0.2	1.5	1	1	0	1	1	1	1	RNA	binding
AAA_18	PF13238.1	gi|292654306|ref|YP_003534203.1|	-	6.6e-15	55.5	0.1	8.9e-15	55.1	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292654306|ref|YP_003534203.1|	-	6.6e-11	43.0	0.2	1e-10	42.4	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292654306|ref|YP_003534203.1|	-	8.5e-10	38.6	0.0	2.8e-09	36.9	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
ADK	PF00406.17	gi|292654306|ref|YP_003534203.1|	-	0.00023	21.0	0.1	0.00035	20.4	0.1	1.4	1	1	0	1	1	1	1	Adenylate	kinase
CoaE	PF01121.15	gi|292654306|ref|YP_003534203.1|	-	0.00071	19.0	0.1	0.14	11.5	0.0	2.3	2	0	0	2	2	2	2	Dephospho-CoA	kinase
LacI	PF00356.16	gi|292654306|ref|YP_003534203.1|	-	0.056	13.0	0.0	0.1	12.2	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
Cytidylate_kin2	PF13189.1	gi|292654306|ref|YP_003534203.1|	-	0.13	12.1	1.4	1.4	8.8	1.0	2.1	1	1	0	1	1	1	0	Cytidylate	kinase-like	family
DUF307	PF03733.8	gi|292654307|ref|YP_003534204.1|	-	2.2e-09	37.6	24.9	0.00016	22.0	6.5	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF307)
TauE	PF01925.14	gi|292654307|ref|YP_003534204.1|	-	1.3	8.4	14.7	0.86	9.0	2.6	2.1	2	0	0	2	2	2	0	Sulfite	exporter	TauE/SafE
DUF1145	PF06611.7	gi|292654308|ref|YP_003534205.1|	-	0.11	12.0	2.0	0.26	10.9	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1145)
DUF2516	PF10724.4	gi|292654308|ref|YP_003534205.1|	-	5.8	6.9	7.0	14	5.7	0.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2516)
PGM_PMM_II	PF02879.11	gi|292654310|ref|YP_003534207.1|	-	0.054	13.8	0.2	0.11	12.7	0.1	1.6	1	1	0	1	1	1	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
Cpn60_TCP1	PF00118.19	gi|292654311|ref|YP_003534208.1|	-	2.1e-166	554.3	5.9	2.4e-166	554.1	4.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
PGM_PMM_II	PF02879.11	gi|292654311|ref|YP_003534208.1|	-	0.0084	16.4	0.8	6.5	7.1	0.0	2.8	2	0	0	2	2	2	2	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
KH_1	PF00013.24	gi|292654312|ref|YP_003534209.1|	-	6.4e-17	60.9	2.4	2.7e-08	33.3	0.1	2.2	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|292654312|ref|YP_003534209.1|	-	3.7e-09	36.0	0.6	8.5e-05	22.1	0.0	2.5	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.12	gi|292654312|ref|YP_003534209.1|	-	3.1e-06	26.6	0.7	0.0035	16.8	0.0	2.4	2	0	0	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|292654312|ref|YP_003534209.1|	-	0.005	16.4	1.8	1.9	8.2	0.1	3.2	3	1	1	4	4	4	2	KH	domain
RIO1	PF01163.17	gi|292654313|ref|YP_003534210.1|	-	1.8e-62	210.0	0.6	2.2e-62	209.7	0.0	1.4	2	0	0	2	2	2	1	RIO1	family
Kdo	PF06293.9	gi|292654313|ref|YP_003534210.1|	-	2.1e-09	36.7	0.2	4.8e-09	35.5	0.1	1.5	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.18	gi|292654313|ref|YP_003534210.1|	-	1.9e-08	34.3	2.5	1.5e-06	28.1	0.1	2.6	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|292654313|ref|YP_003534210.1|	-	5.4e-05	22.4	0.0	0.00013	21.2	0.0	1.6	1	1	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.6	gi|292654313|ref|YP_003534210.1|	-	0.0012	18.0	0.0	0.0021	17.3	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Toxin_67	PF15545.1	gi|292654313|ref|YP_003534210.1|	-	0.025	14.4	0.3	0.057	13.2	0.2	1.5	1	0	0	1	1	1	0	Putative	toxin	67
eIF-1a	PF01176.14	gi|292654314|ref|YP_003534211.1|	-	8.9e-28	95.5	0.6	1.1e-27	95.1	0.4	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Ribosomal_S5_C	PF03719.10	gi|292654315|ref|YP_003534212.1|	-	0.3	10.4	5.3	2.4	7.5	3.6	2.1	1	1	0	1	1	1	0	Ribosomal	protein	S5,	C-terminal	domain
DUF726	PF05277.7	gi|292654315|ref|YP_003534212.1|	-	0.94	8.2	5.4	0.99	8.2	3.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF726)
DUF2627	PF11118.3	gi|292654315|ref|YP_003534212.1|	-	1.6	8.9	5.9	9.3	6.4	1.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2627)
Abhydrolase_3	PF07859.8	gi|292654316|ref|YP_003534213.1|	-	2.1e-23	82.9	4.4	5.7e-23	81.6	3.0	1.6	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.16	gi|292654316|ref|YP_003534213.1|	-	3.6e-19	68.8	0.0	4.7e-19	68.4	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|292654316|ref|YP_003534213.1|	-	8.5e-15	54.7	1.4	1.1e-14	54.3	1.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
COesterase	PF00135.23	gi|292654316|ref|YP_003534213.1|	-	1.2e-11	44.0	0.0	3e-11	42.7	0.0	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_6	PF12697.2	gi|292654316|ref|YP_003534213.1|	-	4.5e-09	36.5	11.1	3.2e-08	33.7	6.6	2.5	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
Peptidase_S15	PF02129.13	gi|292654316|ref|YP_003534213.1|	-	5.2e-06	26.0	0.0	0.0031	16.9	0.0	2.2	2	0	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
FSH1	PF03959.8	gi|292654316|ref|YP_003534213.1|	-	1.2e-05	24.8	0.0	1.6e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.11	gi|292654316|ref|YP_003534213.1|	-	1.6e-05	24.4	0.0	0.041	13.3	0.0	2.1	2	0	0	2	2	2	2	Phospholipase/Carboxylesterase
Abhydrolase_1	PF00561.15	gi|292654316|ref|YP_003534213.1|	-	2.7e-05	23.8	0.1	0.011	15.3	0.0	2.1	1	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Esterase_phd	PF10503.4	gi|292654316|ref|YP_003534213.1|	-	0.00084	18.6	3.7	0.0063	15.7	3.0	2.1	2	1	0	2	2	2	1	Esterase	PHB	depolymerase
Chlorophyllase2	PF12740.2	gi|292654316|ref|YP_003534213.1|	-	0.0017	17.3	0.0	0.0022	16.9	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
DLH	PF01738.13	gi|292654316|ref|YP_003534213.1|	-	0.0032	16.7	0.2	0.09	12.0	0.1	2.1	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Esterase	PF00756.15	gi|292654316|ref|YP_003534213.1|	-	0.0052	16.2	0.1	0.015	14.7	0.0	1.6	2	0	0	2	2	2	1	Putative	esterase
Abhydrolase_4	PF08386.5	gi|292654316|ref|YP_003534213.1|	-	0.0056	16.5	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
BAAT_C	PF08840.6	gi|292654316|ref|YP_003534213.1|	-	0.013	15.2	0.0	0.12	12.0	0.0	2.1	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Chlorophyllase	PF07224.6	gi|292654316|ref|YP_003534213.1|	-	0.031	13.0	0.0	0.041	12.6	0.0	1.1	1	0	0	1	1	1	0	Chlorophyllase
Lipase_3	PF01764.20	gi|292654316|ref|YP_003534213.1|	-	0.044	13.3	0.2	0.087	12.4	0.1	1.4	1	0	0	1	1	1	0	Lipase	(class	3)
LIP	PF03583.9	gi|292654316|ref|YP_003534213.1|	-	0.07	12.3	0.1	0.33	10.1	0.0	1.9	2	0	0	2	2	2	0	Secretory	lipase
HDPD	PF02924.9	gi|292654316|ref|YP_003534213.1|	-	0.1	12.3	0.8	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	Bacteriophage	lambda	head	decoration	protein	D
tRNA-synt_1b	PF00579.20	gi|292654317|ref|YP_003534214.1|	-	4.1e-49	167.2	0.0	5.4e-49	166.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.13	gi|292654317|ref|YP_003534214.1|	-	0.014	14.0	0.0	4.2	5.9	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
PLDc_N	PF13396.1	gi|292654318|ref|YP_003534215.1|	-	0.0019	17.8	4.0	0.0019	17.8	2.8	2.9	2	1	1	3	3	3	1	Phospholipase_D-nuclease	N-terminal
DUF4131	PF13567.1	gi|292654318|ref|YP_003534215.1|	-	0.089	12.1	4.1	0.13	11.6	2.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF3040	PF11239.3	gi|292654318|ref|YP_003534215.1|	-	0.64	10.1	8.1	0.22	11.5	1.9	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF805	PF05656.9	gi|292654318|ref|YP_003534215.1|	-	1.1	9.0	9.6	1.8	8.4	6.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
PgaD	PF13994.1	gi|292654318|ref|YP_003534215.1|	-	9.1	5.7	6.9	7.9	5.9	0.2	2.6	2	1	1	3	3	3	0	PgaD-like	protein
DUF460	PF04312.8	gi|292654319|ref|YP_003534216.1|	-	5.6e-48	161.9	0.2	5.6e-48	161.9	0.2	2.2	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF460)
DUF641	PF04859.7	gi|292654319|ref|YP_003534216.1|	-	0.0018	18.0	2.8	0.0018	18.0	1.9	3.0	3	1	1	4	4	4	1	Plant	protein	of	unknown	function	(DUF641)
Atg14	PF10186.4	gi|292654319|ref|YP_003534216.1|	-	0.0044	15.9	4.6	0.0044	15.9	3.2	1.5	2	0	0	2	2	2	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Laminin_I	PF06008.9	gi|292654319|ref|YP_003534216.1|	-	0.012	14.9	8.9	0.033	13.4	6.1	1.7	1	0	0	1	1	1	0	Laminin	Domain	I
Spc7	PF08317.6	gi|292654319|ref|YP_003534216.1|	-	0.044	12.4	9.9	0.048	12.3	4.6	2.1	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Laminin_II	PF06009.7	gi|292654319|ref|YP_003534216.1|	-	0.053	13.2	5.0	0.2	11.4	3.5	2.0	1	1	0	1	1	1	0	Laminin	Domain	II
DUF812	PF05667.6	gi|292654319|ref|YP_003534216.1|	-	0.077	11.5	12.2	0.012	14.2	5.6	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
bZIP_1	PF00170.16	gi|292654319|ref|YP_003534216.1|	-	0.12	12.4	14.9	0.77	9.7	1.4	2.7	2	0	0	2	2	2	0	bZIP	transcription	factor
DUF342	PF03961.8	gi|292654319|ref|YP_003534216.1|	-	0.4	9.0	5.0	0.85	7.9	3.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
FlaC_arch	PF05377.6	gi|292654319|ref|YP_003534216.1|	-	0.41	10.5	6.0	5.1	7.0	0.6	2.8	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
V_ATPase_I	PF01496.14	gi|292654319|ref|YP_003534216.1|	-	0.9	7.3	10.6	2.4	5.9	7.4	1.6	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HBS1_N	PF08938.5	gi|292654319|ref|YP_003534216.1|	-	3.1	7.9	10.0	0.51	10.4	3.1	2.6	3	0	0	3	3	3	0	HBS1	N-terminus
HAUS-augmin3	PF14932.1	gi|292654319|ref|YP_003534216.1|	-	4.9	6.2	12.5	0.09	11.9	3.6	1.8	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
APG6	PF04111.7	gi|292654319|ref|YP_003534216.1|	-	6.9	5.6	20.0	0.028	13.4	6.8	2.0	2	0	0	2	2	2	0	Autophagy	protein	Apg6
Band_7	PF01145.20	gi|292654320|ref|YP_003534217.1|	-	1.8e-30	106.1	4.5	2.6e-30	105.6	3.1	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
DUF3592	PF12158.3	gi|292654320|ref|YP_003534217.1|	-	0.0071	16.1	0.5	0.044	13.5	0.2	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
Band_7_1	PF13421.1	gi|292654320|ref|YP_003534217.1|	-	0.0097	15.4	0.1	0.018	14.6	0.1	1.4	1	1	0	1	1	1	1	SPFH	domain-Band	7	family
AA_permease_N	PF08403.5	gi|292654320|ref|YP_003534217.1|	-	0.028	13.7	0.0	0.069	12.4	0.0	1.6	1	0	0	1	1	1	0	Amino	acid	permease	N-terminal
PhzC-PhzF	PF02567.11	gi|292654322|ref|YP_003534219.1|	-	1.7e-61	207.8	0.0	2e-61	207.7	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.14	gi|292654322|ref|YP_003534219.1|	-	0.0014	18.5	0.1	0.024	14.5	0.0	2.4	2	1	0	2	2	2	1	Diaminopimelate	epimerase
Chlorophyllase	PF07224.6	gi|292654322|ref|YP_003534219.1|	-	0.15	10.8	0.0	0.23	10.1	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase
Lactamase_B_2	PF12706.2	gi|292654323|ref|YP_003534220.1|	-	3.8e-31	108.1	0.2	5e-31	107.7	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|292654323|ref|YP_003534220.1|	-	2.3e-14	53.5	5.4	6.3e-13	48.8	3.7	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.1	gi|292654323|ref|YP_003534220.1|	-	0.0038	16.6	0.0	0.0067	15.8	0.0	1.3	1	0	0	1	1	1	1	tRNase	Z	endonuclease
AAA	PF00004.24	gi|292654324|ref|YP_003534221.1|	-	3.3e-12	46.7	0.0	8e-12	45.5	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|292654324|ref|YP_003534221.1|	-	2.2e-10	40.4	0.0	3.3e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.1	gi|292654324|ref|YP_003534221.1|	-	1.9e-08	34.4	0.2	4.4e-05	23.5	0.0	3.1	1	1	2	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654324|ref|YP_003534221.1|	-	1.2e-07	31.9	0.0	7.6e-07	29.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|292654324|ref|YP_003534221.1|	-	2.5e-07	30.6	0.0	5.9e-07	29.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|292654324|ref|YP_003534221.1|	-	1.8e-06	27.7	0.0	2.7e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rep_fac_C	PF08542.6	gi|292654324|ref|YP_003534221.1|	-	6.8e-06	25.9	0.0	1.4e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA_19	PF13245.1	gi|292654324|ref|YP_003534221.1|	-	1.8e-05	24.4	0.0	8.3e-05	22.2	0.0	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
Sigma54_activat	PF00158.21	gi|292654324|ref|YP_003534221.1|	-	0.00025	20.5	0.0	0.0068	15.8	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|292654324|ref|YP_003534221.1|	-	0.00027	21.7	0.0	0.00081	20.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|292654324|ref|YP_003534221.1|	-	0.00039	20.1	0.2	0.0032	17.1	0.2	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|292654324|ref|YP_003534221.1|	-	0.0011	19.2	0.0	0.0027	18.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|292654324|ref|YP_003534221.1|	-	0.0016	17.9	0.0	0.0052	16.2	0.0	1.9	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|292654324|ref|YP_003534221.1|	-	0.0026	17.4	0.0	0.0093	15.6	0.0	1.8	1	1	0	1	1	1	1	NACHT	domain
AAA_11	PF13086.1	gi|292654324|ref|YP_003534221.1|	-	0.0053	16.3	0.0	0.0093	15.5	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|292654324|ref|YP_003534221.1|	-	0.0076	15.1	0.0	0.022	13.6	0.0	1.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_25	PF13481.1	gi|292654324|ref|YP_003534221.1|	-	0.0079	15.6	0.6	0.59	9.4	0.0	3.1	2	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|292654324|ref|YP_003534221.1|	-	0.0084	15.7	0.8	0.04	13.4	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|292654324|ref|YP_003534221.1|	-	0.01	15.8	0.0	0.44	10.5	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
NTPase_1	PF03266.10	gi|292654324|ref|YP_003534221.1|	-	0.014	15.0	0.0	1.8	8.2	0.0	2.3	2	0	0	2	2	2	0	NTPase
Mg_chelatase	PF01078.16	gi|292654324|ref|YP_003534221.1|	-	0.023	13.8	0.0	0.061	12.4	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
DNA_pol3_delta	PF06144.8	gi|292654324|ref|YP_003534221.1|	-	0.049	13.1	0.0	0.11	11.9	0.0	1.6	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
Zeta_toxin	PF06414.7	gi|292654324|ref|YP_003534221.1|	-	0.057	12.5	0.1	0.15	11.0	0.1	1.8	1	1	0	1	1	1	0	Zeta	toxin
RNA_helicase	PF00910.17	gi|292654324|ref|YP_003534221.1|	-	0.058	13.5	0.0	0.24	11.5	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
FtsK_SpoIIIE	PF01580.13	gi|292654324|ref|YP_003534221.1|	-	0.064	12.7	0.0	0.13	11.7	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF2075	PF09848.4	gi|292654324|ref|YP_003534221.1|	-	0.064	12.2	0.0	0.083	11.8	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DEAD	PF00270.24	gi|292654324|ref|YP_003534221.1|	-	0.076	12.5	0.0	12	5.3	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_2	PF07724.9	gi|292654324|ref|YP_003534221.1|	-	0.083	12.7	0.0	0.26	11.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Viral_helicase1	PF01443.13	gi|292654324|ref|YP_003534221.1|	-	0.088	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_28	PF13521.1	gi|292654324|ref|YP_003534221.1|	-	0.088	12.7	0.0	0.27	11.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|292654324|ref|YP_003534221.1|	-	0.11	12.8	0.0	0.21	11.8	0.0	1.8	1	1	0	1	1	1	0	ABC	transporter
Rad17	PF03215.10	gi|292654324|ref|YP_003534221.1|	-	0.15	10.7	0.0	0.36	9.4	0.0	1.6	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
Se-cys_synth_N	PF12390.3	gi|292654324|ref|YP_003534221.1|	-	1.2	9.2	5.5	1.2	9.3	0.3	3.0	3	0	0	3	3	2	0	Selenocysteine	synthase	N	terminal
PS_Dcarbxylase	PF02666.10	gi|292654325|ref|YP_003534222.1|	-	5.9e-31	107.3	0.2	2e-24	86.0	0.0	2.0	1	1	1	2	2	2	2	Phosphatidylserine	decarboxylase
RnfC_N	PF13375.1	gi|292654325|ref|YP_003534222.1|	-	0.0031	17.1	0.7	2.4	7.9	0.0	3.3	2	1	1	3	3	3	2	RnfC	Barrel	sandwich	hybrid	domain
Biotin_lipoyl	PF00364.17	gi|292654325|ref|YP_003534222.1|	-	0.012	15.2	0.3	15	5.3	0.0	3.4	4	0	0	4	4	4	0	Biotin-requiring	enzyme
Urease_beta	PF00699.15	gi|292654326|ref|YP_003534223.1|	-	1.4e-46	156.4	0.2	1.7e-46	156.1	0.2	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
Glyoxalase_2	PF12681.2	gi|292654326|ref|YP_003534223.1|	-	0.13	12.9	0.1	0.16	12.6	0.0	1.3	1	0	0	1	1	1	0	Glyoxalase-like	domain
Amidohydro_1	PF01979.15	gi|292654327|ref|YP_003534224.1|	-	1.4e-53	182.7	2.6	1.9e-53	182.2	1.8	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|292654327|ref|YP_003534224.1|	-	7.5e-47	158.4	2.7	1.5e-46	157.4	1.8	1.5	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_5	PF13594.1	gi|292654327|ref|YP_003534224.1|	-	4.1e-06	26.5	3.0	1.1e-05	25.1	2.1	1.8	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|292654327|ref|YP_003534224.1|	-	0.00014	22.0	6.8	0.0014	18.7	1.3	3.1	2	1	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|292654327|ref|YP_003534224.1|	-	0.0011	18.2	2.5	0.0015	17.8	1.4	1.6	1	1	0	1	1	1	1	Amidohydrolase	family
Urease_gamma	PF00547.13	gi|292654328|ref|YP_003534225.1|	-	7.1e-44	147.8	0.0	8.7e-44	147.5	0.0	1.1	1	0	0	1	1	1	1	Urease,	gamma	subunit
cobW	PF02492.14	gi|292654329|ref|YP_003534226.1|	-	3.4e-35	121.0	0.0	4.3e-35	120.7	0.0	1.0	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|292654329|ref|YP_003534226.1|	-	7.2e-10	38.0	0.8	6.5e-09	34.9	0.6	1.9	1	1	0	1	1	1	1	ArgK	protein
MobB	PF03205.9	gi|292654329|ref|YP_003534226.1|	-	1e-06	28.4	0.0	1.7e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|292654329|ref|YP_003534226.1|	-	0.0015	18.8	0.1	0.0023	18.2	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292654329|ref|YP_003534226.1|	-	0.0041	17.9	0.1	0.008	16.9	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292654329|ref|YP_003534226.1|	-	0.0052	16.7	0.0	0.011	15.7	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.4	gi|292654329|ref|YP_003534226.1|	-	0.0084	14.7	0.0	0.012	14.3	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
LpxK	PF02606.9	gi|292654329|ref|YP_003534226.1|	-	0.014	14.3	0.1	0.022	13.7	0.1	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_30	PF13604.1	gi|292654329|ref|YP_003534226.1|	-	0.017	14.6	0.0	0.023	14.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Amidohydro_2	PF04909.9	gi|292654329|ref|YP_003534226.1|	-	0.018	14.5	0.0	0.022	14.3	0.0	1.2	1	0	0	1	1	1	0	Amidohydrolase
NTPase_1	PF03266.10	gi|292654329|ref|YP_003534226.1|	-	0.019	14.6	0.0	0.031	13.9	0.0	1.3	1	0	0	1	1	1	0	NTPase
NACHT	PF05729.7	gi|292654329|ref|YP_003534226.1|	-	0.029	14.0	0.1	0.051	13.2	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
KAP_NTPase	PF07693.9	gi|292654329|ref|YP_003534226.1|	-	0.038	12.9	0.0	0.038	12.9	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
AAA_10	PF12846.2	gi|292654329|ref|YP_003534226.1|	-	0.043	13.2	0.0	0.06	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
ATP_bind_1	PF03029.12	gi|292654329|ref|YP_003534226.1|	-	0.054	13.0	0.0	0.18	11.3	0.0	1.8	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
SRP54	PF00448.17	gi|292654329|ref|YP_003534226.1|	-	0.055	12.9	0.0	0.083	12.3	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ABC_tran	PF00005.22	gi|292654329|ref|YP_003534226.1|	-	0.059	13.6	0.0	0.081	13.2	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_19	PF13245.1	gi|292654329|ref|YP_003534226.1|	-	0.14	11.9	0.3	0.27	11.0	0.2	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
Arch_ATPase	PF01637.13	gi|292654329|ref|YP_003534226.1|	-	0.14	11.8	0.0	0.2	11.3	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
UreD	PF01774.12	gi|292654330|ref|YP_003534227.1|	-	6.3e-53	179.3	0.5	7.8e-53	179.0	0.3	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
UreE_N	PF02814.10	gi|292654331|ref|YP_003534228.1|	-	1.5e-10	40.4	7.3	3.8e-10	39.1	5.1	1.7	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.7	gi|292654331|ref|YP_003534228.1|	-	0.0015	18.6	43.1	1.2e+02	2.8	29.9	3.1	1	1	0	1	1	1	0	UreE	urease	accessory	protein,	C-terminal	domain
NicO	PF03824.11	gi|292654331|ref|YP_003534228.1|	-	3.5	6.8	6.0	3.6	6.8	4.2	1.2	1	0	0	1	1	1	0	High-affinity	nickel-transport	protein
UreF	PF01730.11	gi|292654332|ref|YP_003534229.1|	-	1.1e-37	129.3	1.7	1.4e-37	129.0	1.2	1.1	1	0	0	1	1	1	1	UreF
NfeD	PF01957.13	gi|292654334|ref|YP_003534231.1|	-	0.046	13.8	0.3	0.047	13.8	0.2	1.0	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF202	PF02656.10	gi|292654334|ref|YP_003534231.1|	-	0.048	13.8	2.1	0.056	13.6	1.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF805	PF05656.9	gi|292654334|ref|YP_003534231.1|	-	0.11	12.2	1.2	0.14	12.0	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF3087	PF11286.3	gi|292654334|ref|YP_003534231.1|	-	0.19	10.9	0.5	0.22	10.7	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3087)
DUF4516	PF14990.1	gi|292654334|ref|YP_003534231.1|	-	2.4	7.7	5.4	4.7	6.8	3.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4516)
UPF0020	PF01170.13	gi|292654335|ref|YP_003534232.1|	-	1.2e-28	99.9	0.0	2e-28	99.1	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|292654335|ref|YP_003534232.1|	-	3.8e-12	46.2	0.6	3.8e-12	46.2	0.4	2.4	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654335|ref|YP_003534232.1|	-	5.4e-07	29.3	0.0	7.3e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
THUMP	PF02926.12	gi|292654335|ref|YP_003534232.1|	-	7.9e-07	29.0	0.0	1.5e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_11	PF08241.7	gi|292654335|ref|YP_003534232.1|	-	9e-07	29.2	0.1	2.5e-06	27.8	0.0	1.8	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654335|ref|YP_003534232.1|	-	4.2e-06	27.3	0.1	8.2e-06	26.3	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|292654335|ref|YP_003534232.1|	-	0.00042	19.7	0.0	0.00059	19.2	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_23	PF13489.1	gi|292654335|ref|YP_003534232.1|	-	0.0072	16.0	0.0	0.015	15.0	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|292654335|ref|YP_003534232.1|	-	0.0095	15.3	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|292654335|ref|YP_003534232.1|	-	0.0095	16.2	0.0	0.02	15.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|292654335|ref|YP_003534232.1|	-	0.011	15.3	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Ubie_methyltran	PF01209.13	gi|292654335|ref|YP_003534232.1|	-	0.011	14.9	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
DUF2157	PF09925.4	gi|292654336|ref|YP_003534233.1|	-	0.013	15.1	2.0	0.013	15.1	1.4	1.5	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
TBP	PF00352.16	gi|292654337|ref|YP_003534234.1|	-	9e-65	214.0	0.0	1.5e-31	107.5	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|292654337|ref|YP_003534234.1|	-	0.0082	16.1	0.0	1.7	8.7	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
CENP-F_C_Rb_bdg	PF10490.4	gi|292654337|ref|YP_003534234.1|	-	0.04	13.2	0.6	9	5.6	0.0	2.3	2	0	0	2	2	2	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
Yip1	PF04893.12	gi|292654338|ref|YP_003534235.1|	-	1.3	8.4	18.2	30	4.0	12.6	2.0	1	1	0	1	1	1	0	Yip1	domain
DUF4260	PF14079.1	gi|292654338|ref|YP_003534235.1|	-	1.9	8.3	6.0	0.91	9.3	2.6	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4260)
Abi	PF02517.11	gi|292654339|ref|YP_003534236.1|	-	3.3e-14	52.7	2.3	3.3e-14	52.7	1.6	3.3	3	1	0	3	3	3	1	CAAX	protease	self-immunity
HisG	PF01634.13	gi|292654340|ref|YP_003534237.1|	-	8.2e-49	165.3	0.2	1.2e-48	164.7	0.1	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|292654340|ref|YP_003534237.1|	-	1.3e-27	95.5	0.1	3.1e-27	94.3	0.1	1.7	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.6	gi|292654340|ref|YP_003534237.1|	-	0.00014	21.5	0.0	0.29	10.7	0.0	2.7	2	1	1	3	3	3	2	NMT1/THI5	like
UcrQ	PF02939.11	gi|292654341|ref|YP_003534238.1|	-	0.19	11.5	0.3	0.43	10.4	0.2	1.6	1	0	0	1	1	1	0	UcrQ	family
MarR_2	PF12802.2	gi|292654342|ref|YP_003534239.1|	-	1.4e-11	43.9	1.1	5.2e-05	22.8	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_20	PF12840.2	gi|292654342|ref|YP_003534239.1|	-	1e-09	38.0	5.0	0.0002	21.1	0.5	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292654342|ref|YP_003534239.1|	-	5.6e-09	35.2	0.0	0.0025	17.1	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292654342|ref|YP_003534239.1|	-	3.2e-07	29.9	0.0	0.00015	21.4	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292654342|ref|YP_003534239.1|	-	1.3e-06	27.9	0.0	0.011	15.3	0.0	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|292654342|ref|YP_003534239.1|	-	9.3e-06	25.2	0.0	0.073	12.7	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.5	gi|292654342|ref|YP_003534239.1|	-	1.1e-05	24.8	0.1	0.021	14.3	0.0	2.6	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292654342|ref|YP_003534239.1|	-	0.013	15.7	0.2	0.37	11.1	0.1	2.4	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|292654342|ref|YP_003534239.1|	-	0.061	12.9	0.0	0.8	9.3	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Penicillinase_R	PF03965.11	gi|292654342|ref|YP_003534239.1|	-	0.07	13.2	0.0	1.7	8.7	0.0	2.2	2	0	0	2	2	2	0	Penicillinase	repressor
HTH_AsnC-type	PF13404.1	gi|292654342|ref|YP_003534239.1|	-	0.072	12.6	0.0	7.1	6.2	0.0	2.7	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
RPA_C	PF08784.6	gi|292654342|ref|YP_003534239.1|	-	0.097	13.1	0.1	0.24	11.8	0.0	1.6	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
CARD	PF00619.16	gi|292654342|ref|YP_003534239.1|	-	1	9.2	4.6	4	7.3	0.3	3.4	3	1	1	4	4	4	0	Caspase	recruitment	domain
7TMR-DISM_7TM	PF07695.6	gi|292654343|ref|YP_003534240.1|	-	0.0018	17.9	2.0	0.0024	17.6	1.4	1.2	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
Exosortase_EpsH	PF09721.5	gi|292654343|ref|YP_003534240.1|	-	0.019	14.1	4.6	0.024	13.8	3.2	1.2	1	0	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
MASE1	PF05231.9	gi|292654343|ref|YP_003534240.1|	-	0.02	13.8	8.8	0.026	13.5	6.1	1.1	1	0	0	1	1	1	0	MASE1
Cyto_ox_2	PF02322.10	gi|292654343|ref|YP_003534240.1|	-	0.1	11.7	5.0	0.13	11.4	3.5	1.0	1	0	0	1	1	1	0	Cytochrome	oxidase	subunit	II
Tetraspannin	PF00335.15	gi|292654343|ref|YP_003534240.1|	-	0.16	11.2	0.2	0.18	11.0	0.1	1.1	1	0	0	1	1	1	0	Tetraspanin	family
Zn_peptidase_2	PF04298.7	gi|292654343|ref|YP_003534240.1|	-	0.17	11.2	2.9	0.2	10.9	2.0	1.0	1	0	0	1	1	1	0	Putative	neutral	zinc	metallopeptidase
PTPS_related	PF10131.4	gi|292654343|ref|YP_003534240.1|	-	0.56	8.2	2.5	0.56	8.2	1.8	1.0	1	0	0	1	1	1	0	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
DoxX_3	PF13781.1	gi|292654343|ref|YP_003534240.1|	-	0.62	10.4	7.1	0.27	11.6	3.3	1.6	1	1	1	2	2	2	0	DoxX-like	family
DUF2306	PF10067.4	gi|292654343|ref|YP_003534240.1|	-	1.6	8.8	8.2	1.1	9.3	1.1	2.1	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2306)
Amidohydro_1	PF01979.15	gi|292654344|ref|YP_003534241.1|	-	6.9e-46	157.4	7.1	9.1e-46	157.0	4.9	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|292654344|ref|YP_003534241.1|	-	4e-11	42.5	0.6	6.1e-10	38.7	0.4	2.8	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|292654344|ref|YP_003534241.1|	-	7.7e-10	39.2	27.3	2.7e-09	37.4	18.9	1.8	1	1	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|292654344|ref|YP_003534241.1|	-	4e-05	22.7	0.0	6.9e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
HTH_IclR	PF09339.5	gi|292654345|ref|YP_003534242.1|	-	0.00059	19.3	0.0	0.00084	18.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292654345|ref|YP_003534242.1|	-	0.0011	18.6	0.1	0.0017	18.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292654345|ref|YP_003534242.1|	-	0.0024	17.5	0.0	0.0034	17.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|292654345|ref|YP_003534242.1|	-	0.029	14.0	0.1	0.069	12.7	0.0	1.6	2	0	0	2	2	2	0	HTH	domain
HTH_27	PF13463.1	gi|292654345|ref|YP_003534242.1|	-	0.06	13.6	0.0	0.1	12.9	0.0	1.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
AdoHcyase	PF05221.12	gi|292654346|ref|YP_003534243.1|	-	6.6e-50	169.5	0.1	7.9e-50	169.2	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|292654346|ref|YP_003534243.1|	-	1.1e-49	168.4	0.8	1.6e-49	167.8	0.3	1.5	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|292654346|ref|YP_003534243.1|	-	4.9e-10	38.8	0.1	8.7e-10	38.0	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|292654346|ref|YP_003534243.1|	-	1.5e-05	24.3	0.8	2.8e-05	23.5	0.1	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
AlaDh_PNT_C	PF01262.16	gi|292654346|ref|YP_003534243.1|	-	0.0036	16.8	0.1	0.1	12.1	0.2	2.4	1	1	1	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|292654346|ref|YP_003534243.1|	-	0.006	16.5	0.1	0.014	15.3	0.0	1.7	1	0	0	1	1	1	1	TrkA-N	domain
ELFV_dehydrog	PF00208.16	gi|292654346|ref|YP_003534243.1|	-	0.027	14.0	0.1	0.054	13.0	0.1	1.6	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Multi_Drug_Res	PF00893.14	gi|292654347|ref|YP_003534244.1|	-	3.3e-26	91.5	2.8	4.2e-26	91.2	1.9	1.1	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EmrE	PF13536.1	gi|292654347|ref|YP_003534244.1|	-	3.4e-06	27.2	6.7	3.9e-06	27.0	4.6	1.2	1	0	0	1	1	1	1	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|292654347|ref|YP_003534244.1|	-	0.0084	15.7	1.3	0.01	15.4	0.9	1.5	1	1	0	1	1	1	1	Triose-phosphate	Transporter	family
EamA	PF00892.15	gi|292654347|ref|YP_003534244.1|	-	0.021	14.8	6.2	0.03	14.3	4.3	1.4	1	1	0	1	1	1	0	EamA-like	transporter	family
DUF4233	PF14017.1	gi|292654347|ref|YP_003534244.1|	-	2.9	7.8	8.2	3.3	7.6	2.9	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4233)
TrmB	PF01978.14	gi|292654348|ref|YP_003534245.1|	-	8.4e-18	63.8	0.0	1.6e-17	62.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Hjc	PF01870.13	gi|292654349|ref|YP_003534246.1|	-	1.3e-28	98.3	0.0	1.6e-28	98.0	0.0	1.1	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
NHL	PF01436.16	gi|292654349|ref|YP_003534246.1|	-	0.035	14.0	0.0	0.069	13.1	0.0	1.5	1	0	0	1	1	1	0	NHL	repeat
SWIM	PF04434.12	gi|292654350|ref|YP_003534247.1|	-	3.5e-05	23.1	0.0	6.1e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2275	PF10039.4	gi|292654351|ref|YP_003534248.1|	-	0.032	14.1	0.8	0.032	14.1	0.6	1.5	1	1	1	2	2	2	0	Predicted	integral	membrane	protein	(DUF2275)
DUF3186	PF11382.3	gi|292654351|ref|YP_003534248.1|	-	0.91	8.5	3.1	0.93	8.5	2.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3186)
DUF3995	PF13160.1	gi|292654351|ref|YP_003534248.1|	-	2.5	8.1	6.4	3	7.8	4.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
ABC2_membrane_2	PF12679.2	gi|292654351|ref|YP_003534248.1|	-	5.3	5.8	7.0	5.7	5.7	4.9	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2964	PF11177.3	gi|292654351|ref|YP_003534248.1|	-	6	6.8	9.6	12	5.9	6.6	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2964)
DUF2273	PF10031.4	gi|292654351|ref|YP_003534248.1|	-	9.6	5.9	11.8	6	6.5	1.1	2.5	2	1	0	2	2	2	0	Small	integral	membrane	protein	(DUF2273)
DNA_primase_lrg	PF04104.9	gi|292654352|ref|YP_003534249.1|	-	1.2e-19	70.6	0.0	6.2e-19	68.2	0.0	1.9	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DUF4651	PF15513.1	gi|292654352|ref|YP_003534249.1|	-	0.048	13.1	0.0	0.12	11.8	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4651)
Zn-ribbon_8	PF09723.5	gi|292654353|ref|YP_003534250.1|	-	0.21	11.5	1.1	0.48	10.4	0.8	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
PCNA_N	PF00705.13	gi|292654354|ref|YP_003534251.1|	-	5.3e-10	38.8	0.3	1.9e-09	37.0	0.1	1.9	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|292654354|ref|YP_003534251.1|	-	1.1e-08	35.1	0.0	2.7e-08	33.7	0.0	1.7	1	1	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.8	gi|292654354|ref|YP_003534251.1|	-	0.11	11.5	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Rad9
DNA_pol3_beta_3	PF02768.10	gi|292654354|ref|YP_003534251.1|	-	0.16	11.5	0.3	0.92	9.0	0.1	2.3	3	1	0	3	3	3	0	DNA	polymerase	III	beta	subunit,	C-terminal	domain
LMWPc	PF01451.16	gi|292654355|ref|YP_003534252.1|	-	1.8e-31	109.3	0.0	2e-31	109.1	0.0	1.0	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
AA_permease_2	PF13520.1	gi|292654356|ref|YP_003534253.1|	-	1.2e-44	152.5	43.1	1.5e-44	152.2	29.9	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|292654356|ref|YP_003534253.1|	-	2.5e-35	121.7	40.0	3.2e-35	121.3	27.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|292654356|ref|YP_003534253.1|	-	4.4e-12	46.3	17.3	2e-09	37.7	2.3	3.1	2	1	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.1	gi|292654356|ref|YP_003534253.1|	-	0.0034	17.2	1.4	0.0034	17.2	1.0	2.3	3	0	0	3	3	3	1	C-terminus	of	AA_permease
2TM	PF13239.1	gi|292654356|ref|YP_003534253.1|	-	0.31	11.1	2.9	0.65	10.0	0.0	2.8	2	0	0	2	2	2	0	2TM	domain
HSA	PF07529.8	gi|292654357|ref|YP_003534254.1|	-	0.14	11.9	0.6	0.17	11.7	0.4	1.1	1	0	0	1	1	1	0	HSA
HTH_24	PF13412.1	gi|292654358|ref|YP_003534255.1|	-	1.2e-12	47.0	0.2	2e-12	46.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292654358|ref|YP_003534255.1|	-	3.2e-11	42.5	0.7	3.2e-11	42.5	0.5	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
TrkA_C	PF02080.16	gi|292654358|ref|YP_003534255.1|	-	4.1e-11	42.3	1.0	8.9e-11	41.2	0.7	1.5	1	0	0	1	1	1	1	TrkA-C	domain
HTH_11	PF08279.7	gi|292654358|ref|YP_003534255.1|	-	6.8e-08	32.0	0.1	1.5e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|292654358|ref|YP_003534255.1|	-	8e-06	25.5	0.6	1.8e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654358|ref|YP_003534255.1|	-	9.4e-06	25.2	0.1	2.3e-05	23.9	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|292654358|ref|YP_003534255.1|	-	0.00056	19.5	0.0	0.00088	18.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|292654358|ref|YP_003534255.1|	-	0.0034	16.8	0.0	0.0073	15.8	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|292654358|ref|YP_003534255.1|	-	0.016	14.9	0.0	0.028	14.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292654358|ref|YP_003534255.1|	-	0.025	14.2	0.0	0.042	13.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_CodY	PF08222.6	gi|292654358|ref|YP_003534255.1|	-	0.045	13.0	0.5	0.1	11.9	0.3	1.5	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292654358|ref|YP_003534255.1|	-	0.063	12.8	0.0	0.17	11.4	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_6	PF01418.12	gi|292654358|ref|YP_003534255.1|	-	0.13	12.0	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
FtsJ	PF01728.14	gi|292654359|ref|YP_003534256.1|	-	1.3e-52	178.4	0.0	1.6e-52	178.1	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.15	gi|292654359|ref|YP_003534256.1|	-	1.5e-12	47.1	0.3	2.8e-12	46.2	0.2	1.5	1	0	0	1	1	1	1	TRAM	domain
NSP13	PF06460.7	gi|292654359|ref|YP_003534256.1|	-	1.5e-05	24.0	0.0	2.1e-05	23.5	0.0	1.1	1	0	0	1	1	1	1	Coronavirus	NSP13
Methyltransf_23	PF13489.1	gi|292654359|ref|YP_003534256.1|	-	0.00033	20.4	0.0	0.0011	18.7	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654359|ref|YP_003534256.1|	-	0.0004	19.9	0.0	0.002	17.7	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654359|ref|YP_003534256.1|	-	0.0016	18.4	0.1	0.004	17.1	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654359|ref|YP_003534256.1|	-	0.12	13.0	0.1	1.4	9.5	0.1	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
DUF3017	PF11222.3	gi|292654360|ref|YP_003534257.1|	-	0.011	15.5	4.4	0.02	14.7	3.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3017)
DUF1084	PF06454.6	gi|292654360|ref|YP_003534257.1|	-	1.1	8.2	4.7	0.79	8.7	1.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1084)
zf-ribbon_3	PF13248.1	gi|292654361|ref|YP_003534258.1|	-	0.0034	16.5	0.1	0.0051	15.9	0.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292654361|ref|YP_003534258.1|	-	0.05	13.1	0.1	0.079	12.5	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654361|ref|YP_003534258.1|	-	0.053	13.2	0.1	0.085	12.5	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|292654361|ref|YP_003534258.1|	-	0.072	12.1	0.0	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
DUF2752	PF10825.3	gi|292654361|ref|YP_003534258.1|	-	0.13	12.3	2.0	0.17	11.9	1.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2752)
LRV_FeS	PF05484.6	gi|292654361|ref|YP_003534258.1|	-	0.14	11.7	1.7	0.16	11.5	1.2	1.3	1	0	0	1	1	1	0	LRV	protein	FeS4	cluster
zf-tcix	PF14952.1	gi|292654361|ref|YP_003534258.1|	-	1.3	8.4	4.4	1.9	7.8	3.0	1.5	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF165	PF02592.10	gi|292654362|ref|YP_003534259.1|	-	5.7e-41	140.0	5.1	5.7e-41	140.0	3.6	1.6	2	0	0	2	2	2	1	Uncharacterized	ACR,	YhhQ	family	COG1738
PetM	PF08041.6	gi|292654362|ref|YP_003534259.1|	-	0.26	10.7	0.2	0.26	10.7	0.2	3.3	3	1	0	3	3	3	0	PetM	family	of	cytochrome	b6f	complex	subunit	7
UPF0233	PF06781.7	gi|292654362|ref|YP_003534259.1|	-	0.29	10.7	1.7	2.4	7.8	0.3	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0233)
LRR19-TM	PF15176.1	gi|292654362|ref|YP_003534259.1|	-	0.35	10.5	1.7	1.6	8.4	0.3	2.4	2	0	0	2	2	2	0	Leucine-rich	repeat	family	19	TM	domain
Caps_synth_CapC	PF14102.1	gi|292654362|ref|YP_003534259.1|	-	0.6	10.2	7.1	0.21	11.6	0.6	2.8	1	1	2	3	3	3	0	Capsule	biosynthesis	CapC
RHH_1	PF01402.16	gi|292654363|ref|YP_003534260.1|	-	0.00038	20.2	0.5	0.0012	18.6	0.1	2.0	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
TatC	PF00902.13	gi|292654364|ref|YP_003534261.1|	-	6.8e-67	225.0	39.2	7.1e-36	123.6	10.8	2.4	2	0	0	2	2	2	2	Sec-independent	protein	translocase	protein	(TatC)
CcmH	PF03918.9	gi|292654364|ref|YP_003534261.1|	-	4.1	6.3	5.9	1.1	8.2	0.1	3.0	3	0	0	3	3	3	0	Cytochrome	C	biogenesis	protein
TatC	PF00902.13	gi|292654365|ref|YP_003534262.1|	-	7e-35	120.3	10.6	8.7e-35	120.0	7.4	1.1	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
DUF161	PF02588.10	gi|292654365|ref|YP_003534262.1|	-	0.82	10.0	5.0	1.6	9.0	3.5	1.5	1	0	0	1	1	1	0	Uncharacterized	BCR,	YitT	family	COG1284
zf-ribbon_3	PF13248.1	gi|292654366|ref|YP_003534263.1|	-	5e-05	22.3	0.8	6.8e-05	21.9	0.5	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
RecR	PF02132.10	gi|292654366|ref|YP_003534263.1|	-	0.00064	19.1	1.4	0.001	18.4	1.0	1.3	1	0	0	1	1	1	1	RecR	protein
PLDc_N	PF13396.1	gi|292654366|ref|YP_003534263.1|	-	0.001	18.7	0.2	0.0014	18.2	0.1	1.2	1	0	0	1	1	1	1	Phospholipase_D-nuclease	N-terminal
DZR	PF12773.2	gi|292654366|ref|YP_003534263.1|	-	0.0029	17.3	0.5	0.0037	17.0	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|292654366|ref|YP_003534263.1|	-	0.41	10.0	2.7	0.71	9.2	1.9	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|292654366|ref|YP_003534263.1|	-	0.79	9.7	4.4	1.4	8.8	0.4	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2HC_2	PF13913.1	gi|292654366|ref|YP_003534263.1|	-	4.8	6.9	5.6	6.2	6.6	0.3	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Polyketide_cyc2	PF10604.4	gi|292654367|ref|YP_003534264.1|	-	1.5e-17	64.0	0.3	1.7e-17	63.8	0.2	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|292654367|ref|YP_003534264.1|	-	4.4e-09	36.5	0.1	5.3e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.15	gi|292654367|ref|YP_003534264.1|	-	1.5e-07	31.4	0.1	2.7e-07	30.6	0.1	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
FixH	PF05751.6	gi|292654367|ref|YP_003534264.1|	-	0.12	12.2	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	FixH
DUF3386	PF11866.3	gi|292654367|ref|YP_003534264.1|	-	0.13	11.4	0.0	0.19	10.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3386)
His_Phos_1	PF00300.17	gi|292654368|ref|YP_003534265.1|	-	4.2e-36	124.4	0.0	5e-36	124.1	0.0	1.1	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
Asn_synthase	PF00733.16	gi|292654369|ref|YP_003534266.1|	-	1e-13	51.4	0.3	1.7e-13	50.6	0.2	1.3	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|292654369|ref|YP_003534266.1|	-	3.7e-10	39.1	0.0	5.4e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|292654369|ref|YP_003534266.1|	-	1.2e-09	37.1	0.0	1.1e-06	27.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.8	gi|292654369|ref|YP_003534266.1|	-	2.6e-05	23.5	0.0	0.00017	20.9	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Arginosuc_synth	PF00764.14	gi|292654369|ref|YP_003534266.1|	-	0.00084	18.4	0.0	0.0013	17.8	0.0	1.3	1	0	0	1	1	1	1	Arginosuccinate	synthase
ATP_bind_3	PF01171.15	gi|292654369|ref|YP_003534266.1|	-	0.0012	18.4	0.0	0.0067	15.9	0.0	2.0	1	1	1	2	2	2	1	PP-loop	family
ThiI	PF02568.9	gi|292654369|ref|YP_003534266.1|	-	0.02	14.3	0.0	0.078	12.4	0.0	1.9	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
PAPS_reduct	PF01507.14	gi|292654369|ref|YP_003534266.1|	-	0.081	12.7	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
DUF208	PF02677.9	gi|292654369|ref|YP_003534266.1|	-	0.12	12.1	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	BCR,	COG1636
MutS_V	PF00488.16	gi|292654370|ref|YP_003534267.1|	-	1.3e-09	37.8	0.0	2.2e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
HHH	PF00633.18	gi|292654370|ref|YP_003534267.1|	-	0.00074	19.0	0.7	0.014	15.0	0.0	3.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|292654370|ref|YP_003534267.1|	-	0.0019	18.3	2.6	0.0019	18.3	1.8	3.8	4	0	0	4	4	4	1	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|292654370|ref|YP_003534267.1|	-	0.0078	16.2	0.0	0.021	14.9	0.0	1.7	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
AAA_10	PF12846.2	gi|292654370|ref|YP_003534267.1|	-	0.073	12.4	0.8	0.3	10.4	0.0	2.3	3	0	0	3	3	3	0	AAA-like	domain
AAA_21	PF13304.1	gi|292654370|ref|YP_003534267.1|	-	0.23	11.3	0.3	2.9	7.7	0.0	2.1	1	1	0	2	2	2	0	AAA	domain
DUF2207	PF09972.4	gi|292654371|ref|YP_003534268.1|	-	0.072	11.6	1.0	0.078	11.5	0.7	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
SpoIIIAC	PF06686.6	gi|292654371|ref|YP_003534268.1|	-	6	6.7	6.4	0.47	10.2	0.5	1.9	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AC/AD	protein	family
Metal_resist	PF13801.1	gi|292654372|ref|YP_003534269.1|	-	0.043	13.8	1.3	0.19	11.7	0.0	2.0	2	0	0	2	2	2	0	Heavy-metal	resistance
Pilin_PilA	PF14245.1	gi|292654372|ref|YP_003534269.1|	-	0.13	12.7	0.3	1.6	9.2	0.0	2.0	1	1	1	2	2	2	0	Type	IV	pilin	PilA
AAA_16	PF13191.1	gi|292654373|ref|YP_003534270.1|	-	3e-13	50.1	0.2	6.6e-12	45.8	0.2	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654373|ref|YP_003534270.1|	-	1.3e-08	35.0	0.0	2.6e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.6	gi|292654373|ref|YP_003534270.1|	-	7.7e-07	28.7	0.0	2.2e-06	27.3	0.0	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA	PF00004.24	gi|292654373|ref|YP_003534270.1|	-	6.4e-06	26.4	0.0	1.9e-05	24.8	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|292654373|ref|YP_003534270.1|	-	0.00019	21.1	0.1	0.00048	19.8	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
Arch_ATPase	PF01637.13	gi|292654373|ref|YP_003534270.1|	-	0.00031	20.5	0.0	0.00085	19.0	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_33	PF13671.1	gi|292654373|ref|YP_003534270.1|	-	0.00052	19.9	0.0	0.00094	19.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_11	PF13086.1	gi|292654373|ref|YP_003534270.1|	-	0.00091	18.8	0.0	0.0012	18.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_35	PF14516.1	gi|292654373|ref|YP_003534270.1|	-	0.0018	17.0	0.0	0.064	11.8	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
IstB_IS21	PF01695.12	gi|292654373|ref|YP_003534270.1|	-	0.0024	17.3	0.2	0.74	9.2	0.0	2.6	3	0	0	3	3	2	1	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|292654373|ref|YP_003534270.1|	-	0.0038	16.9	0.0	0.0072	16.0	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_14	PF13173.1	gi|292654373|ref|YP_003534270.1|	-	0.0043	16.9	0.0	0.013	15.4	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292654373|ref|YP_003534270.1|	-	0.017	15.9	1.9	0.074	13.8	1.3	2.4	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|292654373|ref|YP_003534270.1|	-	0.026	14.2	0.1	0.047	13.4	0.1	1.4	1	0	0	1	1	1	0	NTPase
AAA_18	PF13238.1	gi|292654373|ref|YP_003534270.1|	-	0.027	14.7	0.0	0.098	12.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|292654373|ref|YP_003534270.1|	-	0.032	13.1	0.0	0.052	12.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Sigma54_activat	PF00158.21	gi|292654373|ref|YP_003534270.1|	-	0.045	13.2	0.0	0.086	12.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_32	PF13654.1	gi|292654373|ref|YP_003534270.1|	-	0.065	11.8	0.1	5.7	5.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|292654373|ref|YP_003534270.1|	-	0.07	12.1	0.0	0.13	11.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|292654373|ref|YP_003534270.1|	-	0.074	12.5	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
RNA_helicase	PF00910.17	gi|292654373|ref|YP_003534270.1|	-	0.074	13.2	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF815	PF05673.8	gi|292654373|ref|YP_003534270.1|	-	0.088	11.7	0.0	0.32	9.8	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.1	gi|292654373|ref|YP_003534270.1|	-	0.095	12.0	0.1	0.58	9.5	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|292654373|ref|YP_003534270.1|	-	0.098	12.2	0.1	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|292654373|ref|YP_003534270.1|	-	0.12	12.0	0.1	0.25	11.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.10	gi|292654373|ref|YP_003534270.1|	-	0.14	10.8	0.0	0.2	10.3	0.0	1.4	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_24	PF13479.1	gi|292654373|ref|YP_003534270.1|	-	0.18	11.3	0.1	0.31	10.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Rib_5-P_isom_A	PF06026.9	gi|292654374|ref|YP_003534271.1|	-	1.6e-56	190.3	0.0	1.9e-56	190.0	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|292654374|ref|YP_003534271.1|	-	1e-06	28.5	0.4	1.4e-05	24.8	0.0	2.2	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
AAA_17	PF13207.1	gi|292654374|ref|YP_003534271.1|	-	0.086	13.6	0.0	0.15	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF1931	PF09123.6	gi|292654375|ref|YP_003534272.1|	-	6.4e-05	22.9	1.1	7.2e-05	22.7	0.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.18	gi|292654375|ref|YP_003534272.1|	-	0.00024	21.1	0.1	0.00041	20.3	0.1	1.5	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|292654375|ref|YP_003534272.1|	-	0.0004	20.4	0.0	0.00052	20.0	0.0	1.4	1	1	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
SBP_bac_7	PF03480.8	gi|292654375|ref|YP_003534272.1|	-	0.01	14.9	0.2	0.011	14.8	0.1	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
OmdA	PF13376.1	gi|292654375|ref|YP_003534272.1|	-	0.047	13.3	0.5	0.062	12.9	0.3	1.4	1	1	0	1	1	1	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
Peptidase_M41	PF01434.13	gi|292654375|ref|YP_003534272.1|	-	0.059	12.8	0.1	0.062	12.7	0.1	1.0	1	0	0	1	1	1	0	Peptidase	family	M41
Glutaredoxin	PF00462.19	gi|292654375|ref|YP_003534272.1|	-	0.18	11.8	0.4	0.22	11.5	0.3	1.2	1	0	0	1	1	1	0	Glutaredoxin
DUF2191	PF09957.4	gi|292654375|ref|YP_003534272.1|	-	0.46	10.3	4.0	3.1	7.6	0.5	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
AIRC	PF00731.15	gi|292654376|ref|YP_003534273.1|	-	1.2e-18	66.8	4.7	1.2e-18	66.8	3.2	2.0	2	0	0	2	2	2	1	AIR	carboxylase
Creatininase	PF02633.9	gi|292654376|ref|YP_003534273.1|	-	0.014	14.5	0.5	0.039	13.0	0.3	1.8	2	0	0	2	2	2	0	Creatinine	amidohydrolase
LytR_C	PF13399.1	gi|292654376|ref|YP_003534273.1|	-	0.23	11.8	8.5	5.3	7.4	0.2	3.1	2	2	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
DZR	PF12773.2	gi|292654377|ref|YP_003534274.1|	-	0.00067	19.4	0.4	0.00078	19.2	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292654377|ref|YP_003534274.1|	-	0.0013	17.8	1.3	0.23	10.6	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
C1_1	PF00130.17	gi|292654377|ref|YP_003534274.1|	-	0.011	15.4	0.3	0.014	15.0	0.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_Tnp_IS1595	PF12760.2	gi|292654377|ref|YP_003534274.1|	-	0.025	14.3	3.6	1.4	8.8	2.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292654377|ref|YP_003534274.1|	-	0.026	14.8	0.5	0.032	14.5	0.3	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.1	gi|292654377|ref|YP_003534274.1|	-	0.038	13.4	3.1	0.22	11.0	2.1	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654377|ref|YP_003534274.1|	-	0.04	13.5	0.6	0.052	13.2	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
ATPase-cat_bd	PF12156.3	gi|292654377|ref|YP_003534274.1|	-	0.057	13.9	0.7	0.061	13.8	0.5	1.1	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
PhnA_Zn_Ribbon	PF08274.7	gi|292654377|ref|YP_003534274.1|	-	0.057	13.2	4.1	0.61	9.9	2.8	2.0	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Ogr_Delta	PF04606.7	gi|292654377|ref|YP_003534274.1|	-	0.063	12.9	3.1	1	9.0	0.3	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-DNL	PF05180.7	gi|292654377|ref|YP_003534274.1|	-	0.065	12.9	0.3	0.074	12.7	0.2	1.1	1	0	0	1	1	1	0	DNL	zinc	finger
Zn-ribbon_8	PF09723.5	gi|292654377|ref|YP_003534274.1|	-	0.077	12.9	3.2	0.94	9.4	2.0	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF35_N	PF12172.3	gi|292654377|ref|YP_003534274.1|	-	0.1	12.5	2.5	3.6	7.6	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TerY-C	PF15616.1	gi|292654377|ref|YP_003534274.1|	-	0.12	12.3	0.4	0.13	12.1	0.3	1.1	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
RNA_POL_M_15KD	PF02150.11	gi|292654377|ref|YP_003534274.1|	-	0.12	12.0	0.4	3.1	7.5	0.0	2.0	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ISL3	PF14690.1	gi|292654377|ref|YP_003534274.1|	-	0.15	12.1	0.3	15	5.7	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RRN7	PF11781.3	gi|292654377|ref|YP_003534274.1|	-	0.21	11.0	1.9	6	6.4	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zinc_ribbon_4	PF13717.1	gi|292654377|ref|YP_003534274.1|	-	0.22	11.2	2.1	0.55	9.9	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|292654377|ref|YP_003534274.1|	-	0.24	11.1	1.2	2.1	8.1	0.0	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zinc_ribbon_5	PF13719.1	gi|292654377|ref|YP_003534274.1|	-	0.27	10.8	2.2	0.63	9.6	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|292654377|ref|YP_003534274.1|	-	0.28	10.8	2.3	1.8	8.3	1.7	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
DUF2296	PF10058.4	gi|292654377|ref|YP_003534274.1|	-	0.28	10.9	4.7	0.33	10.7	0.1	2.1	1	1	1	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DUF164	PF02591.10	gi|292654377|ref|YP_003534274.1|	-	0.29	11.0	4.4	0.39	10.5	1.5	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
zf-HYPF	PF07503.7	gi|292654377|ref|YP_003534274.1|	-	0.41	10.0	2.2	12	5.3	0.2	2.2	2	0	0	2	2	2	0	HypF	finger
Auto_anti-p27	PF06677.7	gi|292654377|ref|YP_003534274.1|	-	0.98	9.2	2.9	6.5	6.6	2.0	2.0	1	1	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-RING_3	PF14369.1	gi|292654377|ref|YP_003534274.1|	-	1.5	8.8	4.1	1.5	8.8	0.1	2.1	1	1	1	2	2	2	0	zinc-finger
UPF0547	PF10571.4	gi|292654377|ref|YP_003534274.1|	-	2.7	7.7	8.0	5.1	6.8	0.8	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Prim_Zn_Ribbon	PF08273.7	gi|292654377|ref|YP_003534274.1|	-	8.7	6.5	7.4	12	6.0	0.4	2.3	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
GIY-YIG	PF01541.19	gi|292654378|ref|YP_003534275.1|	-	4.8e-14	52.4	0.1	5.5e-14	52.3	0.1	1.0	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.4	gi|292654378|ref|YP_003534275.1|	-	0.0055	17.0	0.1	0.0063	16.8	0.1	1.2	1	0	0	1	1	1	1	T5orf172	domain
MUG113	PF13455.1	gi|292654378|ref|YP_003534275.1|	-	0.069	13.6	0.2	0.1	13.0	0.1	1.4	1	1	0	1	1	1	0	Meiotically	up-regulated	gene	113
PGM_PMM_I	PF02878.11	gi|292654379|ref|YP_003534276.1|	-	6.7e-38	129.2	0.0	1.1e-37	128.5	0.0	1.3	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|292654379|ref|YP_003534276.1|	-	2e-24	85.9	0.8	4.4e-24	84.8	0.5	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|292654379|ref|YP_003534276.1|	-	7.5e-23	80.7	0.1	1.5e-22	79.8	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|292654379|ref|YP_003534276.1|	-	3.5e-13	49.3	0.5	1.3e-12	47.4	0.0	2.3	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
HTH_20	PF12840.2	gi|292654380|ref|YP_003534277.1|	-	5.3e-06	26.1	0.1	0.0001	22.0	0.1	2.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654380|ref|YP_003534277.1|	-	0.076	12.6	0.0	14	5.4	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Jag_N	PF14804.1	gi|292654380|ref|YP_003534277.1|	-	0.12	12.4	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Jag	N-terminus
Acetyltransf_10	PF13673.1	gi|292654381|ref|YP_003534278.1|	-	1.9e-11	44.1	0.1	2.4e-11	43.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292654381|ref|YP_003534278.1|	-	1e-10	41.6	0.0	1.6e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292654381|ref|YP_003534278.1|	-	9.3e-09	35.2	0.3	3.4e-08	33.4	0.2	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.1	gi|292654381|ref|YP_003534278.1|	-	1e-07	31.8	0.1	1.3e-05	25.0	0.0	2.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292654381|ref|YP_003534278.1|	-	0.00079	19.1	0.2	0.0056	16.3	0.1	2.2	2	1	0	2	2	2	1	FR47-like	protein
Acetyltransf_CG	PF14542.1	gi|292654381|ref|YP_003534278.1|	-	0.0024	17.7	0.0	0.0038	17.0	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
ThiS	PF02597.15	gi|292654382|ref|YP_003534279.1|	-	0.00072	19.9	1.0	0.00079	19.7	0.7	1.1	1	0	0	1	1	1	1	ThiS	family
Glyco_hydro_42C	PF08533.5	gi|292654382|ref|YP_003534279.1|	-	0.057	12.9	0.6	0.14	11.6	0.1	1.8	1	1	1	2	2	2	0	Beta-galactosidase	C-terminal	domain
DUF3945	PF13101.1	gi|292654382|ref|YP_003534279.1|	-	0.067	12.5	0.0	0.086	12.1	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3945)
Rep_fac_C	PF08542.6	gi|292654383|ref|YP_003534280.1|	-	1.2e-21	76.4	0.0	2.4e-21	75.5	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
DNA_pol3_delta2	PF13177.1	gi|292654383|ref|YP_003534280.1|	-	1.5e-18	67.0	0.0	4.5e-16	58.9	0.0	2.2	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA	PF00004.24	gi|292654383|ref|YP_003534280.1|	-	3.3e-18	66.1	0.0	3.1e-16	59.7	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|292654383|ref|YP_003534280.1|	-	1.6e-08	34.7	0.5	4.4e-05	23.5	0.0	3.0	1	1	2	3	3	3	2	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|292654383|ref|YP_003534280.1|	-	2.5e-08	33.2	0.0	2.2e-07	30.1	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Rad17	PF03215.10	gi|292654383|ref|YP_003534280.1|	-	1.4e-07	30.5	0.0	0.0011	17.7	0.0	2.2	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|292654383|ref|YP_003534280.1|	-	5e-07	29.9	0.3	0.0015	18.6	0.1	2.6	2	1	0	2	2	1	1	AAA	domain
AAA_14	PF13173.1	gi|292654383|ref|YP_003534280.1|	-	2e-06	27.7	0.0	3.9e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DNA_pol3_delta	PF06144.8	gi|292654383|ref|YP_003534280.1|	-	6.6e-06	25.7	0.0	1.9e-05	24.2	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA_25	PF13481.1	gi|292654383|ref|YP_003534280.1|	-	1e-05	25.0	1.0	0.00012	21.5	0.0	2.3	1	1	2	3	3	3	1	AAA	domain
IstB_IS21	PF01695.12	gi|292654383|ref|YP_003534280.1|	-	0.0011	18.4	0.0	0.0024	17.3	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|292654383|ref|YP_003534280.1|	-	0.0013	19.5	0.5	0.0049	17.6	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|292654383|ref|YP_003534280.1|	-	0.0027	16.9	0.0	0.68	9.0	0.0	2.4	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|292654383|ref|YP_003534280.1|	-	0.0032	17.2	0.0	0.024	14.3	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.6	gi|292654383|ref|YP_003534280.1|	-	0.0035	16.9	0.0	0.0069	15.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|292654383|ref|YP_003534280.1|	-	0.0061	16.0	0.0	0.33	10.4	0.0	2.4	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|292654383|ref|YP_003534280.1|	-	0.0064	16.1	0.0	0.038	13.5	0.0	2.2	3	0	0	3	3	2	1	AAA	domain
ResIII	PF04851.10	gi|292654383|ref|YP_003534280.1|	-	0.0068	16.2	0.0	0.021	14.6	0.0	1.8	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|292654383|ref|YP_003534280.1|	-	0.016	14.9	0.0	0.053	13.2	0.0	1.9	1	0	0	1	1	1	0	Part	of	AAA	domain
SRP54	PF00448.17	gi|292654383|ref|YP_003534280.1|	-	0.021	14.2	0.0	0.23	10.9	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_18	PF13238.1	gi|292654383|ref|YP_003534280.1|	-	0.021	15.1	0.0	0.061	13.6	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|292654383|ref|YP_003534280.1|	-	0.021	14.3	0.0	0.047	13.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
TIP49	PF06068.8	gi|292654383|ref|YP_003534280.1|	-	0.026	13.2	0.0	0.68	8.5	0.0	2.5	2	1	0	2	2	2	0	TIP49	C-terminus
AAA_23	PF13476.1	gi|292654383|ref|YP_003534280.1|	-	0.028	14.7	0.1	0.046	14.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|292654383|ref|YP_003534280.1|	-	0.043	13.2	1.3	4.1	6.7	0.0	2.7	1	1	1	3	3	3	0	AAA-like	domain
SNF2_N	PF00176.18	gi|292654383|ref|YP_003534280.1|	-	0.054	12.2	0.0	0.29	9.8	0.0	1.9	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
MobB	PF03205.9	gi|292654383|ref|YP_003534280.1|	-	0.077	12.7	0.0	0.21	11.2	0.0	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.17	gi|292654383|ref|YP_003534280.1|	-	0.095	12.8	0.0	0.24	11.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
ArsA_ATPase	PF02374.10	gi|292654383|ref|YP_003534280.1|	-	0.11	11.5	0.0	0.41	9.6	0.0	1.9	2	0	0	2	2	2	0	Anion-transporting	ATPase
DUF3253	PF11625.3	gi|292654383|ref|YP_003534280.1|	-	0.12	12.3	0.0	1.5	8.7	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3253)
NB-ARC	PF00931.17	gi|292654383|ref|YP_003534280.1|	-	0.13	11.0	0.0	0.21	10.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.7	gi|292654383|ref|YP_003534280.1|	-	0.14	11.7	0.0	1	8.9	0.0	2.2	2	1	1	3	3	3	0	NACHT	domain
GAF_2	PF13185.1	gi|292654384|ref|YP_003534281.1|	-	1.3e-19	71.1	9.9	2.3e-10	41.1	0.2	3.5	4	0	0	4	4	4	2	GAF	domain
HATPase_c	PF02518.21	gi|292654384|ref|YP_003534281.1|	-	6.8e-17	61.1	0.1	1.9e-16	59.7	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.1	gi|292654384|ref|YP_003534281.1|	-	7e-16	58.4	1.1	1.1e-06	28.7	0.1	3.0	3	0	0	3	3	3	2	GAF	domain
GAF	PF01590.21	gi|292654384|ref|YP_003534281.1|	-	2e-13	50.7	0.4	6.4e-07	29.6	0.0	2.9	2	0	0	2	2	2	2	GAF	domain
HisKA	PF00512.20	gi|292654384|ref|YP_003534281.1|	-	5.1e-13	48.8	1.6	5.1e-13	48.8	1.1	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|292654384|ref|YP_003534281.1|	-	4.4e-08	32.8	0.0	1.5e-07	31.1	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.5	gi|292654384|ref|YP_003534281.1|	-	1.4e-07	31.4	4.2	7.9e-07	29.0	0.1	3.8	3	1	1	4	4	4	1	PAS	fold
PAS_9	PF13426.1	gi|292654384|ref|YP_003534281.1|	-	2.9e-07	30.8	0.0	7.4e-07	29.4	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.1	gi|292654384|ref|YP_003534281.1|	-	5e-06	26.1	0.0	1.7e-05	24.4	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|292654384|ref|YP_003534281.1|	-	0.079	12.6	0.0	0.2	11.3	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Orbi_VP5	PF00901.12	gi|292654384|ref|YP_003534281.1|	-	0.099	10.8	0.7	0.53	8.4	0.2	1.9	2	0	0	2	2	2	0	Orbivirus	outer	capsid	protein	VP5
TspO_MBR	PF03073.10	gi|292654385|ref|YP_003534282.1|	-	5.5e-48	162.2	19.5	6.3e-48	162.0	13.6	1.0	1	0	0	1	1	1	1	TspO/MBR	family
Bax1-I	PF01027.15	gi|292654385|ref|YP_003534282.1|	-	0.099	12.2	8.1	0.14	11.7	5.6	1.2	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
VKOR	PF07884.9	gi|292654385|ref|YP_003534282.1|	-	0.91	9.3	9.7	1.3	8.9	0.3	2.3	1	1	1	2	2	2	0	Vitamin	K	epoxide	reductase	family
tRNA-synt_2c	PF01411.14	gi|292654386|ref|YP_003534283.1|	-	2.5e-116	389.1	0.0	3.1e-116	388.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|292654386|ref|YP_003534283.1|	-	2e-12	46.7	0.7	3.7e-12	45.9	0.5	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.14	gi|292654386|ref|YP_003534283.1|	-	4.5e-07	29.4	7.6	1.1e-06	28.2	5.3	1.6	1	0	0	1	1	1	1	DHHA1	domain
Abhydrolase_6	PF12697.2	gi|292654387|ref|YP_003534284.1|	-	5.2e-31	108.3	13.9	5.9e-31	108.1	9.6	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292654387|ref|YP_003534284.1|	-	4e-18	65.8	0.1	1.9e-16	60.3	0.1	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|292654387|ref|YP_003534284.1|	-	8.2e-13	48.3	3.6	1.8e-12	47.2	2.5	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_4	PF08386.5	gi|292654387|ref|YP_003534284.1|	-	6.1e-05	22.8	0.0	0.00012	21.8	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
Abhydrolase_2	PF02230.11	gi|292654387|ref|YP_003534284.1|	-	0.0042	16.5	0.0	0.81	9.0	0.0	2.1	2	0	0	2	2	2	2	Phospholipase/Carboxylesterase
Thioesterase	PF00975.15	gi|292654387|ref|YP_003534284.1|	-	0.015	15.5	0.1	0.018	15.2	0.1	1.3	1	0	0	1	1	1	0	Thioesterase	domain
DLH	PF01738.13	gi|292654387|ref|YP_003534284.1|	-	0.02	14.1	0.0	1.6	7.9	0.0	2.3	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
GATase	PF00117.23	gi|292654388|ref|YP_003534285.1|	-	3.6e-22	78.7	0.0	4.7e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292654388|ref|YP_003534285.1|	-	2.8e-08	33.4	0.1	2.6e-07	30.2	0.0	2.4	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|292654388|ref|YP_003534285.1|	-	0.006	16.0	0.0	0.0086	15.5	0.0	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|292654388|ref|YP_003534285.1|	-	0.046	12.9	0.0	0.08	12.2	0.0	1.3	1	0	0	1	1	1	0	Putative	amidotransferase
GATase_3	PF07685.9	gi|292654388|ref|YP_003534285.1|	-	0.06	12.9	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Acyl-CoA_dh_1	PF00441.19	gi|292654389|ref|YP_003534286.1|	-	4.3e-33	114.5	1.2	6e-33	114.0	0.8	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|292654389|ref|YP_003534286.1|	-	1.6e-24	86.6	0.0	4.3e-24	85.2	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|292654389|ref|YP_003534286.1|	-	1.2e-22	79.1	0.0	2.6e-22	78.0	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|292654389|ref|YP_003534286.1|	-	9.4e-14	51.8	2.2	1.4e-13	51.2	1.5	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.3	gi|292654389|ref|YP_003534286.1|	-	0.012	15.0	0.2	0.051	12.9	0.1	2.0	1	1	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Fer4	PF00037.22	gi|292654391|ref|YP_003534288.1|	-	3.3e-12	45.4	13.8	1.3e-07	30.9	3.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|292654391|ref|YP_003534288.1|	-	4.3e-10	39.8	12.5	2.9e-08	33.9	4.7	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|292654391|ref|YP_003534288.1|	-	4.4e-10	38.9	14.4	2.3e-06	27.2	4.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|292654391|ref|YP_003534288.1|	-	1e-09	38.4	5.9	1.5e-09	37.9	4.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292654391|ref|YP_003534288.1|	-	2.5e-07	30.4	9.3	7e-07	29.0	6.5	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292654391|ref|YP_003534288.1|	-	3.2e-07	30.0	19.7	8.9e-05	22.2	6.2	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|292654391|ref|YP_003534288.1|	-	6.6e-07	28.8	10.2	0.002	17.9	2.4	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|292654391|ref|YP_003534288.1|	-	1.9e-06	27.7	10.2	4e-05	23.5	4.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|292654391|ref|YP_003534288.1|	-	6.7e-06	26.7	5.8	0.00027	21.6	1.1	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|292654391|ref|YP_003534288.1|	-	7.1e-06	25.9	8.0	0.00032	20.7	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|292654391|ref|YP_003534288.1|	-	1.7e-05	25.0	1.0	0.068	13.5	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|292654391|ref|YP_003534288.1|	-	1.9e-05	24.8	12.0	0.0048	17.3	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|292654391|ref|YP_003534288.1|	-	5.6e-05	23.4	3.4	0.0018	18.6	0.8	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|292654391|ref|YP_003534288.1|	-	0.00029	21.3	9.8	0.13	12.8	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|292654391|ref|YP_003534288.1|	-	0.0014	18.9	14.1	0.024	15.0	9.8	2.4	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Glyoxalase_2	PF12681.2	gi|292654392|ref|YP_003534289.1|	-	8.7e-15	55.2	0.3	1e-14	55.0	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|292654392|ref|YP_003534289.1|	-	5e-12	45.9	0.1	5.9e-12	45.6	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|292654392|ref|YP_003534289.1|	-	2.3e-09	37.2	0.1	2.3e-08	34.0	0.1	2.0	1	1	1	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|292654392|ref|YP_003534289.1|	-	0.091	12.6	0.4	0.46	10.3	0.3	1.9	1	1	0	1	1	1	0	Glyoxalase-like	domain
Ferritin	PF00210.19	gi|292654393|ref|YP_003534290.1|	-	7.8e-23	80.7	1.2	8.8e-23	80.6	0.8	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|292654393|ref|YP_003534290.1|	-	4.3e-08	33.5	0.4	5.1e-08	33.3	0.3	1.1	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.5	gi|292654393|ref|YP_003534290.1|	-	9.6e-05	22.5	2.7	0.11	12.7	0.1	2.3	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF2383)
DUF892	PF05974.7	gi|292654393|ref|YP_003534290.1|	-	0.0012	18.7	5.3	0.0061	16.3	3.6	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Ferritin-like	PF12902.2	gi|292654393|ref|YP_003534290.1|	-	0.0025	17.4	0.2	0.003	17.2	0.1	1.3	1	1	0	1	1	1	1	Ferritin-like
Ferritin_2	PF13668.1	gi|292654393|ref|YP_003534290.1|	-	0.003	17.5	0.3	0.0036	17.2	0.2	1.2	1	0	0	1	1	1	1	Ferritin-like	domain
Mn_catalase	PF05067.7	gi|292654393|ref|YP_003534290.1|	-	0.0039	15.9	0.8	0.021	13.5	0.1	1.9	1	1	1	2	2	2	1	Manganese	containing	catalase
NTF2	PF02136.15	gi|292654393|ref|YP_003534290.1|	-	0.0092	16.3	0.0	0.012	16.0	0.0	1.2	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
Img2	PF05046.9	gi|292654393|ref|YP_003534290.1|	-	0.076	13.2	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DUF4439	PF14530.1	gi|292654393|ref|YP_003534290.1|	-	0.098	13.1	0.7	0.14	12.6	0.5	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4439)
D5_N	PF08706.6	gi|292654393|ref|YP_003534290.1|	-	0.1	12.6	0.1	0.12	12.4	0.1	1.3	1	0	0	1	1	1	0	D5	N	terminal	like
Ldh_1_N	PF00056.18	gi|292654394|ref|YP_003534291.1|	-	1.6e-44	151.1	0.1	2.5e-44	150.5	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|292654394|ref|YP_003534291.1|	-	2.3e-38	131.6	0.1	7.5e-37	126.7	0.0	2.1	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
ThiF	PF00899.16	gi|292654394|ref|YP_003534291.1|	-	0.029	14.1	0.5	0.069	12.9	0.4	1.6	1	0	0	1	1	1	0	ThiF	family
Semialdhyde_dh	PF01118.19	gi|292654394|ref|YP_003534291.1|	-	0.032	14.5	0.1	0.065	13.5	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|292654394|ref|YP_003534291.1|	-	0.056	13.3	0.6	0.14	12.0	0.4	1.7	1	1	0	1	1	1	0	short	chain	dehydrogenase
DAO	PF01266.19	gi|292654394|ref|YP_003534291.1|	-	0.41	9.5	3.8	1.5	7.6	2.6	1.9	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
CCG	PF02754.11	gi|292654395|ref|YP_003534292.1|	-	7.4e-20	70.7	0.0	8.9e-14	51.2	0.0	2.4	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|292654395|ref|YP_003534292.1|	-	7.8e-12	45.0	6.6	1.2e-11	44.4	3.6	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|292654395|ref|YP_003534292.1|	-	4.5e-11	42.8	9.0	5.4e-11	42.5	3.9	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|292654395|ref|YP_003534292.1|	-	9.6e-10	37.6	14.6	4.5e-05	22.8	2.2	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|292654395|ref|YP_003534292.1|	-	9.6e-10	38.7	6.0	0.0015	18.9	0.1	3.6	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|292654395|ref|YP_003534292.1|	-	2.9e-08	33.9	8.3	2.9e-08	33.9	5.8	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292654395|ref|YP_003534292.1|	-	6.7e-07	29.0	15.4	9e-06	25.4	9.8	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|292654395|ref|YP_003534292.1|	-	1.5e-06	27.7	21.4	5.7e-05	22.8	2.4	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|292654395|ref|YP_003534292.1|	-	2.6e-05	24.4	21.0	0.00016	21.9	8.0	3.0	3	1	2	5	5	4	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|292654395|ref|YP_003534292.1|	-	3.2e-05	23.9	17.8	0.0037	17.4	0.5	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|292654395|ref|YP_003534292.1|	-	0.00016	21.4	26.2	0.00018	21.2	3.1	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|292654395|ref|YP_003534292.1|	-	0.00021	21.1	11.1	0.021	14.6	0.4	2.7	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|292654395|ref|YP_003534292.1|	-	0.00045	20.8	13.1	0.027	15.1	9.7	2.6	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|292654395|ref|YP_003534292.1|	-	0.016	15.7	7.3	0.78	10.3	0.9	3.1	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Nitrate_red_gam	PF02665.9	gi|292654395|ref|YP_003534292.1|	-	0.064	12.6	5.0	0.11	11.8	3.4	1.3	1	0	0	1	1	1	0	Nitrate	reductase	gamma	subunit
Fer4_3	PF12798.2	gi|292654395|ref|YP_003534292.1|	-	0.82	10.3	27.5	0.3	11.7	3.9	3.1	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|292654395|ref|YP_003534292.1|	-	1.5	9.2	15.9	3.7	8.0	2.2	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
CbiQ	PF02361.11	gi|292654396|ref|YP_003534293.1|	-	2.3e-12	46.9	6.3	1.1e-10	41.4	4.4	2.1	1	1	0	1	1	1	1	Cobalt	transport	protein
NicO	PF03824.11	gi|292654396|ref|YP_003534293.1|	-	0.012	14.9	0.5	0.052	12.8	0.0	2.0	2	0	0	2	2	2	0	High-affinity	nickel-transport	protein
QCR10	PF09796.4	gi|292654396|ref|YP_003534293.1|	-	0.08	12.6	1.0	0.12	12.0	0.0	1.9	2	0	0	2	2	2	0	Ubiquinol-cytochrome-c	reductase	complex	subunit	(QCR10)
ABC_tran	PF00005.22	gi|292654397|ref|YP_003534294.1|	-	1.4e-26	93.3	0.0	1.9e-26	92.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292654397|ref|YP_003534294.1|	-	1.4e-08	35.0	0.0	0.00067	19.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|292654397|ref|YP_003534294.1|	-	4.3e-06	26.8	1.2	1.1e-05	25.5	0.7	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292654397|ref|YP_003534294.1|	-	6e-05	22.6	0.0	0.059	12.8	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
SbcCD_C	PF13558.1	gi|292654397|ref|YP_003534294.1|	-	9.7e-05	22.2	0.1	0.0013	18.5	0.1	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.1	gi|292654397|ref|YP_003534294.1|	-	0.00017	21.8	0.1	0.67	10.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292654397|ref|YP_003534294.1|	-	0.00039	19.7	0.0	0.013	14.7	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292654397|ref|YP_003534294.1|	-	0.00079	18.9	0.1	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.1	gi|292654397|ref|YP_003534294.1|	-	0.0024	17.8	0.0	0.0052	16.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292654397|ref|YP_003534294.1|	-	0.0031	16.9	0.4	0.65	9.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|292654397|ref|YP_003534294.1|	-	0.0041	17.2	0.1	0.011	15.9	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|292654397|ref|YP_003534294.1|	-	0.0067	16.0	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
Zeta_toxin	PF06414.7	gi|292654397|ref|YP_003534294.1|	-	0.012	14.7	0.0	0.02	14.0	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_19	PF13245.1	gi|292654397|ref|YP_003534294.1|	-	0.013	15.2	5.3	0.073	12.8	0.4	2.9	2	1	0	2	2	2	0	Part	of	AAA	domain
AAA_24	PF13479.1	gi|292654397|ref|YP_003534294.1|	-	0.015	14.9	0.0	0.021	14.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|292654397|ref|YP_003534294.1|	-	0.017	15.5	0.0	0.035	14.6	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_13	PF13166.1	gi|292654397|ref|YP_003534294.1|	-	0.019	13.4	0.0	0.19	10.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|292654397|ref|YP_003534294.1|	-	0.019	14.1	0.0	0.026	13.6	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.1	gi|292654397|ref|YP_003534294.1|	-	0.021	14.6	0.9	0.086	12.7	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|292654397|ref|YP_003534294.1|	-	0.022	14.4	0.1	0.036	13.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_14	PF13173.1	gi|292654397|ref|YP_003534294.1|	-	0.027	14.3	0.0	0.078	12.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|292654397|ref|YP_003534294.1|	-	0.027	15.2	0.2	0.18	12.6	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.4	gi|292654397|ref|YP_003534294.1|	-	0.031	12.8	0.1	4.8	5.6	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
cobW	PF02492.14	gi|292654397|ref|YP_003534294.1|	-	0.037	13.4	0.1	0.1	11.9	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|292654397|ref|YP_003534294.1|	-	0.04	14.2	0.0	0.055	13.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|292654397|ref|YP_003534294.1|	-	0.04	13.6	0.0	0.084	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
T2SE	PF00437.15	gi|292654397|ref|YP_003534294.1|	-	0.041	12.7	0.2	0.12	11.2	0.0	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.1	gi|292654397|ref|YP_003534294.1|	-	0.045	13.3	0.3	0.089	12.3	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
XdhC_CoxI	PF02625.11	gi|292654397|ref|YP_003534294.1|	-	0.048	13.2	0.4	0.23	11.0	0.0	2.3	2	1	1	3	3	3	0	XdhC	and	CoxI	family
DUF258	PF03193.11	gi|292654397|ref|YP_003534294.1|	-	0.06	12.5	0.0	0.077	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
KaiC	PF06745.8	gi|292654397|ref|YP_003534294.1|	-	0.074	12.1	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	KaiC
FtsK_SpoIIIE	PF01580.13	gi|292654397|ref|YP_003534294.1|	-	0.08	12.4	0.1	0.18	11.2	0.0	1.6	2	0	0	2	2	1	0	FtsK/SpoIIIE	family
NTPase_1	PF03266.10	gi|292654397|ref|YP_003534294.1|	-	0.1	12.2	0.0	0.28	10.8	0.0	1.7	2	0	0	2	2	2	0	NTPase
MobB	PF03205.9	gi|292654397|ref|YP_003534294.1|	-	0.12	12.0	0.0	0.22	11.2	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|292654397|ref|YP_003534294.1|	-	0.17	11.5	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
DUF3584	PF12128.3	gi|292654397|ref|YP_003534294.1|	-	0.18	9.0	0.0	0.24	8.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
BioY	PF02632.9	gi|292654398|ref|YP_003534295.1|	-	4.3e-37	127.0	20.1	6.5e-37	126.4	13.9	1.2	1	0	0	1	1	1	1	BioY	family
DUF3816	PF12822.2	gi|292654398|ref|YP_003534295.1|	-	3e-05	23.9	14.3	3.7e-05	23.6	9.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3816)
FtsK_SpoIIIE	PF01580.13	gi|292654399|ref|YP_003534296.1|	-	0.2	11.1	0.7	0.23	10.9	0.5	1.5	1	1	0	1	1	1	0	FtsK/SpoIIIE	family
MCM	PF00493.18	gi|292654400|ref|YP_003534297.1|	-	1.2e-125	418.7	0.0	1.6e-125	418.3	0.0	1.2	1	0	0	1	1	1	1	MCM2/3/5	family
MCM_N	PF14551.1	gi|292654400|ref|YP_003534297.1|	-	1.6e-17	64.1	0.7	1.1e-16	61.4	0.1	2.5	2	0	0	2	2	2	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.16	gi|292654400|ref|YP_003534297.1|	-	6.8e-10	38.4	0.0	1.2e-05	24.5	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|292654400|ref|YP_003534297.1|	-	3.2e-06	26.9	0.0	8.7e-06	25.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|292654400|ref|YP_003534297.1|	-	0.004	16.6	0.0	0.071	12.5	0.0	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_16	PF13191.1	gi|292654400|ref|YP_003534297.1|	-	0.013	15.4	0.1	0.048	13.6	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|292654400|ref|YP_003534297.1|	-	0.04	13.6	0.0	0.13	12.0	0.0	1.9	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA	PF00004.24	gi|292654400|ref|YP_003534297.1|	-	0.049	13.8	0.0	0.19	11.9	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|292654400|ref|YP_003534297.1|	-	0.053	13.0	0.1	0.13	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3987	PF13148.1	gi|292654400|ref|YP_003534297.1|	-	0.062	11.8	0.0	3.6	6.0	0.0	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3987)
AAA_3	PF07726.6	gi|292654400|ref|YP_003534297.1|	-	0.087	12.4	0.0	0.43	10.1	0.0	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|292654400|ref|YP_003534297.1|	-	0.14	12.3	0.0	0.47	10.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|292654400|ref|YP_003534297.1|	-	2.9	7.2	5.6	2.8	7.2	0.4	2.9	2	1	1	3	3	3	0	AAA-like	domain
DUF1675	PF07897.6	gi|292654403|ref|YP_003534300.1|	-	0.14	11.9	2.6	0.2	11.5	1.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1675)
Spc7	PF08317.6	gi|292654403|ref|YP_003534300.1|	-	0.2	10.3	1.6	0.25	9.9	1.1	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Jnk-SapK_ap_N	PF09744.4	gi|292654403|ref|YP_003534300.1|	-	0.46	10.4	4.1	3.3	7.6	0.0	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
APG6	PF04111.7	gi|292654403|ref|YP_003534300.1|	-	0.93	8.4	2.4	1.2	8.0	1.7	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
IncA	PF04156.9	gi|292654403|ref|YP_003534300.1|	-	1.1	8.7	7.6	0.96	9.0	2.1	1.9	1	1	1	2	2	2	0	IncA	protein
DUF2360	PF10152.4	gi|292654403|ref|YP_003534300.1|	-	1.2	9.4	4.1	13	6.0	0.8	2.2	2	0	0	2	2	2	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
XhlA	PF10779.4	gi|292654403|ref|YP_003534300.1|	-	2.3	8.1	4.6	4.3	7.3	1.0	2.6	2	1	1	3	3	3	0	Haemolysin	XhlA
CbiA	PF01656.18	gi|292654405|ref|YP_003534302.1|	-	4e-16	58.9	0.1	4.9e-16	58.7	0.1	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|292654405|ref|YP_003534302.1|	-	7.6e-06	26.7	0.0	1.7e-05	25.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_31	PF13614.1	gi|292654405|ref|YP_003534302.1|	-	0.00011	22.1	0.0	0.00023	21.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.13	gi|292654405|ref|YP_003534302.1|	-	0.0012	18.1	0.0	0.94	8.6	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|292654405|ref|YP_003534302.1|	-	0.0015	17.6	0.2	0.0061	15.6	0.3	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_33	PF13671.1	gi|292654405|ref|YP_003534302.1|	-	0.0021	17.9	0.0	0.004	17.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292654405|ref|YP_003534302.1|	-	0.0037	17.5	0.0	0.0077	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292654405|ref|YP_003534302.1|	-	0.035	14.0	0.6	1	9.3	0.0	2.4	3	0	0	3	3	3	0	AAA	ATPase	domain
MipZ	PF09140.6	gi|292654405|ref|YP_003534302.1|	-	0.054	12.5	0.1	3.8	6.5	0.1	2.0	2	0	0	2	2	2	0	ATPase	MipZ
ParA	PF10609.4	gi|292654405|ref|YP_003534302.1|	-	0.07	13.0	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	ParA/MinD	ATPase	like
AAA_25	PF13481.1	gi|292654405|ref|YP_003534302.1|	-	0.082	12.3	0.4	0.29	10.5	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|292654405|ref|YP_003534302.1|	-	0.12	12.5	0.0	0.21	11.7	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
SKI	PF01202.17	gi|292654405|ref|YP_003534302.1|	-	0.12	12.2	0.1	0.19	11.5	0.1	1.3	1	0	0	1	1	1	0	Shikimate	kinase
TFIIB	PF00382.14	gi|292654406|ref|YP_003534303.1|	-	2.9e-34	116.7	0.8	4.1e-19	68.1	0.3	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292654406|ref|YP_003534303.1|	-	1.3e-12	46.7	1.7	2.5e-12	45.9	1.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_28	PF13518.1	gi|292654407|ref|YP_003534304.1|	-	0.085	12.8	0.0	0.6	10.1	0.0	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain
AAA_31	PF13614.1	gi|292654408|ref|YP_003534305.1|	-	2.3e-11	43.8	0.0	3.5e-11	43.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|292654408|ref|YP_003534305.1|	-	3.5e-07	29.8	0.3	3.5e-07	29.8	0.2	2.0	1	1	1	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
YhjQ	PF06564.7	gi|292654408|ref|YP_003534305.1|	-	0.00039	19.8	1.0	0.15	11.3	0.4	2.2	2	0	0	2	2	2	2	YhjQ	protein
MipZ	PF09140.6	gi|292654408|ref|YP_003534305.1|	-	0.00062	18.9	0.5	0.062	12.3	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
HIT	PF01230.18	gi|292654410|ref|YP_003534307.1|	-	5.2e-26	91.0	0.0	6.4e-26	90.7	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|292654410|ref|YP_003534307.1|	-	4.1e-14	52.7	0.0	5.2e-14	52.4	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|292654410|ref|YP_003534307.1|	-	0.017	14.7	0.1	0.027	14.1	0.0	1.4	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
GalP_UDP_tr_C	PF02744.12	gi|292654410|ref|YP_003534307.1|	-	0.029	13.9	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
UDG	PF03167.14	gi|292654411|ref|YP_003534308.1|	-	8.3e-25	87.0	0.0	1e-24	86.7	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Pribosyltran_N	PF13793.1	gi|292654413|ref|YP_003534310.1|	-	1.6e-20	72.9	0.1	5.4e-20	71.2	0.0	1.9	2	1	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.22	gi|292654413|ref|YP_003534310.1|	-	3.3e-10	39.7	0.9	2e-09	37.2	0.2	2.4	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.1	gi|292654413|ref|YP_003534310.1|	-	2.3e-08	34.0	0.2	4.3e-08	33.1	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.1	gi|292654413|ref|YP_003534310.1|	-	0.00028	20.1	0.1	0.00047	19.4	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Glyco_hydro_42M	PF08532.5	gi|292654413|ref|YP_003534310.1|	-	0.0017	17.5	0.0	0.0057	15.8	0.0	1.8	2	0	0	2	2	2	1	Beta-galactosidase	trimerisation	domain
Methyltransf_26	PF13659.1	gi|292654413|ref|YP_003534310.1|	-	0.46	10.5	4.2	2.4	8.2	0.7	2.3	2	1	0	2	2	2	0	Methyltransferase	domain
BiPBP_C	PF06832.7	gi|292654414|ref|YP_003534311.1|	-	0.12	12.3	0.3	4.2	7.3	0.1	2.5	1	1	1	2	2	2	0	Penicillin-Binding	Protein	C-terminus	Family
SWIM	PF04434.12	gi|292654415|ref|YP_003534312.1|	-	6.7e-06	25.4	0.2	1.1e-05	24.8	0.1	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF3368	PF11848.3	gi|292654415|ref|YP_003534312.1|	-	0.14	11.7	0.0	0.66	9.5	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
TRM	PF02005.11	gi|292654416|ref|YP_003534313.1|	-	6.9e-90	301.6	0.0	7.8e-90	301.4	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_26	PF13659.1	gi|292654416|ref|YP_003534313.1|	-	0.0001	22.2	2.9	0.00029	20.8	2.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292654416|ref|YP_003534313.1|	-	0.00043	19.6	0.0	0.00073	18.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Cons_hypoth95	PF03602.10	gi|292654416|ref|YP_003534313.1|	-	0.0083	15.5	0.0	0.013	14.8	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
UPF0020	PF01170.13	gi|292654416|ref|YP_003534313.1|	-	0.011	15.2	0.0	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Zn-ribbon_8	PF09723.5	gi|292654416|ref|YP_003534313.1|	-	0.043	13.7	0.8	0.096	12.6	0.5	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
PrmA	PF06325.8	gi|292654416|ref|YP_003534313.1|	-	0.2	10.7	0.1	0.28	10.2	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Virul_fac_BrkB	PF03631.10	gi|292654417|ref|YP_003534314.1|	-	1e-40	139.7	26.1	1e-40	139.7	18.1	2.1	2	0	0	2	2	2	2	Virulence	factor	BrkB
MDMPI_N	PF11716.3	gi|292654417|ref|YP_003534314.1|	-	0.052	13.9	4.5	0.11	12.9	3.1	1.5	1	0	0	1	1	1	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
CENP-F_leu_zip	PF10473.4	gi|292654417|ref|YP_003534314.1|	-	0.099	12.4	0.2	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
PAP2	PF01569.16	gi|292654418|ref|YP_003534315.1|	-	1.7e-17	63.2	8.7	1.7e-17	63.2	6.0	2.9	2	2	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.1	gi|292654418|ref|YP_003534315.1|	-	1.6e-05	24.4	3.1	3.7e-05	23.3	2.2	1.6	1	0	0	1	1	1	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|292654418|ref|YP_003534315.1|	-	0.016	15.4	0.4	0.016	15.4	0.3	2.3	3	0	0	3	3	3	0	PAP2	superfamily	C-terminal
Gln-synt_C	PF00120.19	gi|292654419|ref|YP_003534316.1|	-	4.5e-104	347.1	0.0	9.5e-104	346.1	0.0	1.5	2	0	0	2	2	2	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|292654419|ref|YP_003534316.1|	-	9.1e-30	102.0	0.9	3.9e-29	100.0	0.0	2.3	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
AsnC_trans_reg	PF01037.16	gi|292654420|ref|YP_003534317.1|	-	6.4e-13	48.2	0.1	1.2e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|292654420|ref|YP_003534317.1|	-	1.3e-12	46.9	0.1	4.1e-12	45.2	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292654420|ref|YP_003534317.1|	-	1.3e-08	34.2	0.3	2.5e-08	33.2	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654420|ref|YP_003534317.1|	-	2e-08	33.7	0.1	3.4e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292654420|ref|YP_003534317.1|	-	7.2e-08	32.1	0.4	2.1e-07	30.6	0.0	1.9	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292654420|ref|YP_003534317.1|	-	7.3e-07	28.7	0.1	2.3e-06	27.1	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|292654420|ref|YP_003534317.1|	-	3.2e-06	26.7	0.0	8.2e-06	25.4	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.1	gi|292654420|ref|YP_003534317.1|	-	1.9e-05	24.5	0.0	9.4e-05	22.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654420|ref|YP_003534317.1|	-	6.1e-05	22.6	0.1	0.0004	19.9	0.0	2.0	2	0	0	2	2	2	1	MarR	family
GntR	PF00392.16	gi|292654420|ref|YP_003534317.1|	-	6.1e-05	22.3	0.0	0.00014	21.1	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_DeoR	PF08220.7	gi|292654420|ref|YP_003534317.1|	-	0.00012	21.5	0.1	0.00037	19.9	0.0	1.8	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.17	gi|292654420|ref|YP_003534317.1|	-	0.00015	21.3	0.1	0.00063	19.3	0.0	2.0	3	0	0	3	3	2	1	MarR	family
HTH_10	PF04967.7	gi|292654420|ref|YP_003534317.1|	-	0.00016	21.2	0.1	0.00044	19.7	0.0	1.8	2	0	0	2	2	1	1	HTH	DNA	binding	domain
HTH_IclR	PF09339.5	gi|292654420|ref|YP_003534317.1|	-	0.00044	19.7	0.1	0.00076	19.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292654420|ref|YP_003534317.1|	-	0.0018	17.8	0.0	0.0041	16.7	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|292654420|ref|YP_003534317.1|	-	0.0038	16.7	0.0	0.0087	15.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292654420|ref|YP_003534317.1|	-	0.0042	16.9	0.0	0.0091	15.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.1	gi|292654420|ref|YP_003534317.1|	-	0.0048	17.1	0.1	0.052	13.8	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|292654420|ref|YP_003534317.1|	-	0.0051	16.5	0.0	0.0091	15.7	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Mga	PF05043.8	gi|292654420|ref|YP_003534317.1|	-	0.0067	16.6	0.0	0.026	14.8	0.0	1.9	2	0	0	2	2	2	1	Mga	helix-turn-helix	domain
HTH_41	PF14502.1	gi|292654420|ref|YP_003534317.1|	-	0.0089	15.6	0.0	0.017	14.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|292654420|ref|YP_003534317.1|	-	0.013	15.4	0.0	0.035	14.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.1	gi|292654420|ref|YP_003534317.1|	-	0.015	15.4	0.0	0.024	14.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|292654420|ref|YP_003534317.1|	-	0.015	14.4	0.0	0.034	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RPA_C	PF08784.6	gi|292654420|ref|YP_003534317.1|	-	0.028	14.8	0.1	0.26	11.7	0.0	2.3	3	0	0	3	3	2	0	Replication	protein	A	C	terminal
Rrf2	PF02082.15	gi|292654420|ref|YP_003534317.1|	-	0.039	14.0	0.0	0.12	12.5	0.0	1.8	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_1	PF00126.22	gi|292654420|ref|YP_003534317.1|	-	0.056	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_CodY	PF08222.6	gi|292654420|ref|YP_003534317.1|	-	0.069	12.4	0.1	0.19	11.0	0.0	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
GerE	PF00196.14	gi|292654420|ref|YP_003534317.1|	-	0.084	12.1	0.1	0.29	10.4	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_29	PF13551.1	gi|292654420|ref|YP_003534317.1|	-	0.12	12.5	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_7	PF02796.10	gi|292654420|ref|YP_003534317.1|	-	0.14	12.0	0.0	0.37	10.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
YdjO	PF14169.1	gi|292654421|ref|YP_003534318.1|	-	0.035	13.5	0.0	0.042	13.3	0.0	1.2	1	0	0	1	1	1	0	Cold-inducible	protein	YdjO
Preseq_ALAS	PF09029.5	gi|292654421|ref|YP_003534318.1|	-	0.047	13.6	0.0	0.047	13.6	0.0	1.0	1	0	0	1	1	1	0	5-aminolevulinate	synthase	presequence
zf-Di19	PF05605.7	gi|292654421|ref|YP_003534318.1|	-	0.05	13.7	0.1	0.069	13.2	0.1	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
PyrI_C	PF02748.10	gi|292654421|ref|YP_003534318.1|	-	0.11	11.9	0.1	0.11	11.9	0.1	1.2	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Ogr_Delta	PF04606.7	gi|292654421|ref|YP_003534318.1|	-	0.11	12.1	0.8	0.43	10.2	0.1	1.9	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Peptidase_M29	PF02073.10	gi|292654422|ref|YP_003534319.1|	-	9e-111	370.4	0.2	1.1e-110	370.1	0.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Peptidase_S24	PF00717.18	gi|292654422|ref|YP_003534319.1|	-	0.0019	17.7	0.0	0.0049	16.4	0.0	1.7	1	0	0	1	1	1	1	Peptidase	S24-like
UPF0146	PF03686.8	gi|292654422|ref|YP_003534319.1|	-	0.021	14.6	0.0	0.044	13.6	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
Beta_elim_lyase	PF01212.16	gi|292654423|ref|YP_003534320.1|	-	2.7e-84	282.7	1.0	3.2e-84	282.5	0.7	1.0	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|292654423|ref|YP_003534320.1|	-	6.5e-05	22.1	0.2	0.00099	18.2	0.0	2.4	3	0	0	3	3	3	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.15	gi|292654423|ref|YP_003534320.1|	-	0.016	13.4	0.0	0.022	13.0	0.0	1.3	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Cation_efflux	PF01545.16	gi|292654424|ref|YP_003534321.1|	-	2.2e-45	154.9	0.1	2.5e-45	154.7	0.1	1.0	1	0	0	1	1	1	1	Cation	efflux	family
PMT_2	PF13231.1	gi|292654424|ref|YP_003534321.1|	-	0.0044	16.9	0.8	0.011	15.5	0.6	1.6	1	0	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
IncA	PF04156.9	gi|292654424|ref|YP_003534321.1|	-	0.051	13.1	2.1	0.11	12.1	0.0	2.3	2	0	0	2	2	2	0	IncA	protein
DUF4401	PF14351.1	gi|292654424|ref|YP_003534321.1|	-	0.81	8.6	7.2	1.9	7.3	2.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4401)
TrbC	PF04956.8	gi|292654424|ref|YP_003534321.1|	-	2.5	8.1	7.4	0.37	10.8	2.2	1.8	2	0	0	2	2	2	0	TrbC/VIRB2	family
Metallophos_2	PF12850.2	gi|292654425|ref|YP_003534322.1|	-	7e-21	74.6	0.4	8.8e-21	74.3	0.3	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292654425|ref|YP_003534322.1|	-	5.9e-07	29.0	0.6	0.0012	18.3	0.4	2.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
HTH_20	PF12840.2	gi|292654426|ref|YP_003534323.1|	-	9.2e-13	47.7	0.5	2.9e-12	46.1	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654426|ref|YP_003534323.1|	-	2.2e-07	30.4	0.0	5.5e-07	29.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292654426|ref|YP_003534323.1|	-	3.7e-06	26.2	0.1	1.2e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292654426|ref|YP_003534323.1|	-	6.9e-05	22.4	0.0	0.00011	21.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|292654426|ref|YP_003534323.1|	-	0.0011	18.5	0.0	0.0024	17.5	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.12	gi|292654426|ref|YP_003534323.1|	-	0.0087	15.5	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Phage_rep_org_N	PF09681.5	gi|292654426|ref|YP_003534323.1|	-	0.023	14.2	0.0	0.042	13.4	0.0	1.3	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_29	PF13551.1	gi|292654426|ref|YP_003534323.1|	-	0.065	13.3	0.0	0.14	12.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
Rrf2	PF02082.15	gi|292654426|ref|YP_003534323.1|	-	0.067	13.3	0.0	0.18	11.9	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2513	PF10711.4	gi|292654426|ref|YP_003534323.1|	-	0.09	12.8	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
DUF2413	PF10310.4	gi|292654426|ref|YP_003534323.1|	-	3.8	6.2	9.2	5.4	5.7	6.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2413)
HAMP	PF00672.20	gi|292654427|ref|YP_003534324.1|	-	0.027	14.6	0.5	0.031	14.4	0.4	1.2	1	0	0	1	1	1	0	HAMP	domain
PHO4	PF01384.15	gi|292654428|ref|YP_003534325.1|	-	5.9e-41	140.1	36.3	5.9e-41	140.1	25.2	1.4	1	1	0	1	1	1	1	Phosphate	transporter	family
DUF21	PF01595.15	gi|292654430|ref|YP_003534327.1|	-	3.3e-51	173.1	1.7	4.5e-51	172.7	1.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CorC_HlyC	PF03471.12	gi|292654430|ref|YP_003534327.1|	-	3.1e-22	78.1	1.0	7.5e-22	76.9	0.7	1.7	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.23	gi|292654430|ref|YP_003534327.1|	-	6.2e-18	64.3	4.6	9.9e-09	34.8	0.1	2.6	2	0	0	2	2	2	2	CBS	domain
GST_N_3	PF13417.1	gi|292654431|ref|YP_003534328.1|	-	1.4e-16	60.4	0.0	1.5e-16	60.3	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.19	gi|292654431|ref|YP_003534328.1|	-	1e-13	51.0	0.0	1.4e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.1	gi|292654431|ref|YP_003534328.1|	-	1.1e-12	47.7	0.0	1.3e-12	47.4	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.15	gi|292654431|ref|YP_003534328.1|	-	0.00067	19.7	0.0	0.00084	19.4	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|292654431|ref|YP_003534328.1|	-	0.03	14.5	0.0	0.03	14.5	0.0	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Prok-RING_4	PF14447.1	gi|292654431|ref|YP_003534328.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
AhpC-TSA	PF00578.16	gi|292654432|ref|YP_003534329.1|	-	2e-15	56.5	0.0	2.5e-15	56.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|292654432|ref|YP_003534329.1|	-	8.3e-08	31.8	0.0	1.7e-07	30.9	0.0	1.4	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|292654432|ref|YP_003534329.1|	-	0.0013	18.6	0.0	0.17	11.7	0.0	2.1	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Sua5_yciO_yrdC	PF01300.13	gi|292654433|ref|YP_003534330.1|	-	1.2e-50	171.1	0.0	1.4e-50	171.0	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Cas_Cas4	PF01930.12	gi|292654434|ref|YP_003534331.1|	-	0.02	14.8	0.0	0.18	11.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF83
DUF3135	PF11333.3	gi|292654434|ref|YP_003534331.1|	-	0.12	12.5	0.0	0.19	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3135)
PDDEXK_1	PF12705.2	gi|292654434|ref|YP_003534331.1|	-	0.17	11.1	1.3	0.46	9.8	0.0	2.1	2	1	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Spermine_synth	PF01564.12	gi|292654435|ref|YP_003534332.1|	-	8.3e-13	47.8	0.0	1.2e-12	47.2	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_18	PF12847.2	gi|292654435|ref|YP_003534332.1|	-	0.00049	20.6	0.0	0.00098	19.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654435|ref|YP_003534332.1|	-	0.001	19.1	0.0	0.0025	17.8	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_30	PF05430.6	gi|292654435|ref|YP_003534332.1|	-	0.0079	15.8	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|292654435|ref|YP_003534332.1|	-	0.019	14.3	0.0	0.032	13.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
PCMT	PF01135.14	gi|292654435|ref|YP_003534332.1|	-	0.047	13.2	0.0	0.089	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.1	gi|292654435|ref|YP_003534332.1|	-	0.1	12.9	0.0	0.25	11.7	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Phage_integrase	PF00589.17	gi|292654438|ref|YP_003534335.1|	-	8.5e-10	38.5	0.0	4.6e-09	36.1	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|292654438|ref|YP_003534335.1|	-	0.00066	19.7	0.0	0.0016	18.5	0.0	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|292654438|ref|YP_003534335.1|	-	0.12	12.7	0.1	0.35	11.2	0.0	1.9	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
C1_2	PF03107.11	gi|292654439|ref|YP_003534336.1|	-	0.023	14.8	0.5	6.7	6.9	0.1	2.2	2	0	0	2	2	2	0	C1	domain
YwhD	PF08741.5	gi|292654439|ref|YP_003534336.1|	-	0.11	11.9	0.4	2.6	7.4	0.0	2.0	1	1	1	2	2	2	0	YwhD	family
HTH_45	PF14947.1	gi|292654440|ref|YP_003534337.1|	-	0.001	18.8	0.0	0.0012	18.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|292654440|ref|YP_003534337.1|	-	0.0026	17.5	0.3	0.0067	16.2	0.1	1.7	1	1	1	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654440|ref|YP_003534337.1|	-	0.0029	17.2	0.0	0.0044	16.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|292654440|ref|YP_003534337.1|	-	0.006	16.2	0.0	0.0098	15.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|292654440|ref|YP_003534337.1|	-	0.0091	15.6	0.1	0.019	14.6	0.0	1.7	1	1	0	1	1	1	1	HTH	domain
HTH_5	PF01022.15	gi|292654440|ref|YP_003534337.1|	-	0.0091	15.6	0.1	0.016	14.8	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.5	gi|292654440|ref|YP_003534337.1|	-	0.017	14.8	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Fe_dep_repress	PF01325.14	gi|292654440|ref|YP_003534337.1|	-	0.025	14.5	0.1	0.084	12.8	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|292654440|ref|YP_003534337.1|	-	0.026	14.3	0.0	0.049	13.4	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
ESCRT-II	PF05871.7	gi|292654440|ref|YP_003534337.1|	-	0.054	13.4	0.0	0.065	13.1	0.0	1.1	1	0	0	1	1	1	0	ESCRT-II	complex	subunit
HTH_1	PF00126.22	gi|292654440|ref|YP_003534337.1|	-	0.08	12.6	1.2	0.18	11.5	0.8	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_28	PF13518.1	gi|292654440|ref|YP_003534337.1|	-	0.097	12.6	1.4	0.48	10.4	0.3	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292654440|ref|YP_003534337.1|	-	0.13	11.8	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF4095	PF13338.1	gi|292654440|ref|YP_003534337.1|	-	0.14	12.2	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4095)
PB1	PF00564.19	gi|292654442|ref|YP_003534339.1|	-	0.1	12.2	0.4	0.43	10.2	0.1	2.1	1	1	1	2	2	2	0	PB1	domain
SpoIIIAC	PF06686.6	gi|292654444|ref|YP_003534341.1|	-	0.00089	19.0	2.7	0.0012	18.5	1.9	1.1	1	0	0	1	1	1	1	Stage	III	sporulation	protein	AC/AD	protein	family
Peptidase_U49	PF10463.4	gi|292654444|ref|YP_003534341.1|	-	0.0016	18.2	0.1	0.0018	18.0	0.1	1.1	1	0	0	1	1	1	1	Peptidase	U49
Tetraspannin	PF00335.15	gi|292654444|ref|YP_003534341.1|	-	0.0022	17.3	0.0	0.0023	17.2	0.0	1.0	1	0	0	1	1	1	1	Tetraspanin	family
DUF3169	PF11368.3	gi|292654444|ref|YP_003534341.1|	-	0.005	16.0	0.5	0.0059	15.8	0.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3169)
TRAP_alpha	PF03896.11	gi|292654444|ref|YP_003534341.1|	-	0.062	12.2	0.1	0.072	12.0	0.1	1.1	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Ovate	PF04844.8	gi|292654444|ref|YP_003534341.1|	-	0.084	12.6	0.1	0.17	11.6	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	repressor,	ovate
Tic20	PF09685.5	gi|292654444|ref|YP_003534341.1|	-	0.087	12.8	1.5	0.12	12.3	1.0	1.3	1	0	0	1	1	1	0	Tic20-like	protein
UPF0150	PF03681.10	gi|292654446|ref|YP_003534343.1|	-	2.1e-07	30.4	0.0	4.5e-07	29.3	0.0	1.6	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0150)
YcfA	PF07927.7	gi|292654447|ref|YP_003534344.1|	-	7.5e-13	48.1	0.0	1.1e-12	47.6	0.0	1.2	1	0	0	1	1	1	1	YcfA-like	protein
HIF-1	PF11413.3	gi|292654450|ref|YP_003534347.1|	-	0.61	9.3	2.9	0.89	8.7	2.0	1.3	1	0	0	1	1	1	0	Hypoxia-inducible	factor-1
DUF3854	PF12965.2	gi|292654451|ref|YP_003534348.1|	-	0.035	13.7	1.7	0.039	13.5	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3854)
MacB_PCD	PF12704.2	gi|292654451|ref|YP_003534348.1|	-	0.053	13.1	6.2	0.0074	15.8	1.6	1.6	1	1	1	2	2	2	0	MacB-like	periplasmic	core	domain
RskA	PF10099.4	gi|292654451|ref|YP_003534348.1|	-	0.075	12.7	1.7	0.12	12.1	1.1	1.5	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
DIL	PF01843.14	gi|292654452|ref|YP_003534349.1|	-	0.096	12.5	0.0	0.24	11.3	0.0	1.6	1	0	0	1	1	1	0	DIL	domain
DUF2749	PF10907.3	gi|292654453|ref|YP_003534350.1|	-	2.5	8.0	5.0	4.5	7.2	0.7	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2749)
Myco_19_kDa	PF05481.7	gi|292654453|ref|YP_003534350.1|	-	9.3	6.0	10.3	13	5.5	6.3	1.9	1	1	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
AAA_25	PF13481.1	gi|292654455|ref|YP_003534352.1|	-	4e-07	29.6	2.2	0.0014	18.0	0.3	3.4	1	1	2	3	3	3	2	AAA	domain
AAA	PF00004.24	gi|292654455|ref|YP_003534352.1|	-	0.00035	20.7	0.0	0.00096	19.3	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|292654455|ref|YP_003534352.1|	-	0.00049	19.7	0.6	0.0027	17.4	0.2	2.4	2	1	0	2	2	2	1	Part	of	AAA	domain
TIP49	PF06068.8	gi|292654455|ref|YP_003534352.1|	-	0.001	17.8	0.2	0.0015	17.3	0.1	1.2	1	0	0	1	1	1	1	TIP49	C-terminus
Zot	PF05707.7	gi|292654455|ref|YP_003534352.1|	-	0.0025	17.2	0.0	0.048	13.1	0.0	2.2	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_16	PF13191.1	gi|292654455|ref|YP_003534352.1|	-	0.006	16.5	0.1	0.021	14.8	0.0	1.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_11	PF13086.1	gi|292654455|ref|YP_003534352.1|	-	0.02	14.4	0.0	0.31	10.5	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|292654455|ref|YP_003534352.1|	-	0.039	13.5	0.1	0.28	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.7	gi|292654455|ref|YP_003534352.1|	-	0.039	12.9	0.0	0.064	12.2	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|292654455|ref|YP_003534352.1|	-	0.12	12.5	0.0	0.36	10.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
DDE_Tnp_1	PF01609.16	gi|292654456|ref|YP_003534353.1|	-	1.3e-27	96.7	0.0	1.8e-27	96.3	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|292654456|ref|YP_003534353.1|	-	0.0052	16.9	0.0	0.014	15.5	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292654456|ref|YP_003534353.1|	-	0.0059	15.6	0.1	0.014	14.4	0.1	1.5	2	0	0	2	2	2	1	Archaeal	putative	transposase	ISC1217
DUF2249	PF10006.4	gi|292654456|ref|YP_003534353.1|	-	0.049	13.2	0.1	0.21	11.1	0.1	2.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
CcmD	PF04995.9	gi|292654456|ref|YP_003534353.1|	-	1.4	8.7	4.1	0.37	10.5	0.3	2.0	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
DDE_Tnp_1	PF01609.16	gi|292654457|ref|YP_003534354.1|	-	2e-26	92.8	0.1	2.7e-26	92.4	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|292654457|ref|YP_003534354.1|	-	0.0048	17.0	0.0	0.012	15.8	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292654457|ref|YP_003534354.1|	-	0.0058	15.6	0.1	0.013	14.4	0.1	1.5	2	0	0	2	2	2	1	Archaeal	putative	transposase	ISC1217
DUF2249	PF10006.4	gi|292654457|ref|YP_003534354.1|	-	0.05	13.1	0.2	0.22	11.0	0.1	2.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
CcmD	PF04995.9	gi|292654457|ref|YP_003534354.1|	-	0.11	12.2	0.4	0.37	10.5	0.3	1.9	1	0	0	1	1	1	0	Heme	exporter	protein	D	(CcmD)
ARL6IP6	PF15062.1	gi|292654458|ref|YP_003534355.1|	-	0.14	12.0	0.0	0.15	12.0	0.0	1.0	1	0	0	1	1	1	0	Haemopoietic	lineage	transmembrane	helix
DEDD_Tnp_IS110	PF01548.12	gi|292654459|ref|YP_003534356.1|	-	3.7e-24	85.0	0.9	6.7e-24	84.1	0.6	1.4	1	0	0	1	1	1	1	Transposase
Transposase_20	PF02371.11	gi|292654459|ref|YP_003534356.1|	-	1.1e-21	76.7	0.0	2.9e-21	75.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
Zwint	PF15556.1	gi|292654459|ref|YP_003534356.1|	-	0.015	14.5	0.0	0.022	13.9	0.0	1.2	1	0	0	1	1	1	0	ZW10	interactor
Rbsn	PF11464.3	gi|292654459|ref|YP_003534356.1|	-	0.16	11.5	1.3	4.5	6.9	0.2	2.9	2	0	0	2	2	2	0	Rabenosyn	Rab	binding	domain
HTH_23	PF13384.1	gi|292654460|ref|YP_003534357.1|	-	6.8e-05	22.3	0.6	0.0022	17.5	0.3	2.6	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.1	gi|292654460|ref|YP_003534357.1|	-	0.00015	21.0	0.0	0.00035	19.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.1	gi|292654460|ref|YP_003534357.1|	-	0.0061	16.6	1.6	0.024	14.7	0.3	2.5	2	1	1	3	3	3	1	Winged	helix-turn	helix
HTH_3	PF01381.17	gi|292654460|ref|YP_003534357.1|	-	0.0078	16.0	0.0	0.021	14.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_15	PF12324.3	gi|292654460|ref|YP_003534357.1|	-	0.023	14.3	0.0	0.052	13.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_28	PF13518.1	gi|292654460|ref|YP_003534357.1|	-	0.03	14.3	0.1	0.28	11.2	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292654460|ref|YP_003534357.1|	-	0.051	13.2	0.0	0.21	11.2	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
Sigma70_r3	PF04539.11	gi|292654460|ref|YP_003534357.1|	-	0.055	13.3	0.1	0.19	11.6	0.0	1.9	2	0	0	2	2	2	0	Sigma-70	region	3
DUF3268	PF11672.3	gi|292654462|ref|YP_003534359.1|	-	0.0016	18.5	0.2	0.0019	18.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3268)
DZR	PF12773.2	gi|292654462|ref|YP_003534359.1|	-	0.0049	16.6	0.9	0.0072	16.1	0.2	1.6	2	0	0	2	2	2	1	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.11	gi|292654462|ref|YP_003534359.1|	-	0.028	14.1	1.6	1.3	8.7	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DNA_RNApol_7kD	PF03604.8	gi|292654462|ref|YP_003534359.1|	-	0.045	13.2	1.0	4.8	6.7	0.1	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.5	gi|292654462|ref|YP_003534359.1|	-	1.7	8.6	4.3	7.4	6.6	0.1	2.5	2	1	0	3	3	3	0	Zinc	ribbon	domain
CitMHS	PF03600.11	gi|292654463|ref|YP_003534360.1|	-	6.3e-37	126.9	57.7	6.2e-29	100.6	21.6	2.1	1	1	1	2	2	2	2	Citrate	transporter
TrkA_C	PF02080.16	gi|292654463|ref|YP_003534360.1|	-	2.5e-23	81.4	4.1	4.1e-14	51.9	0.2	2.5	2	0	0	2	2	2	2	TrkA-C	domain
Na_sulph_symp	PF00939.14	gi|292654463|ref|YP_003534360.1|	-	1.5e-19	70.2	36.3	1.2e-12	47.5	10.0	3.1	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
DUF4342	PF14242.1	gi|292654463|ref|YP_003534360.1|	-	0.0084	15.8	0.8	0.0084	15.8	0.5	4.7	4	2	2	6	6	6	1	Domain	of	unknown	function	(DUF4342)
DEAD	PF00270.24	gi|292654464|ref|YP_003534361.1|	-	2.3e-25	89.0	0.0	4.8e-25	87.9	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|292654464|ref|YP_003534361.1|	-	1.9e-12	46.8	0.0	4.7e-12	45.6	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292654464|ref|YP_003534361.1|	-	5.4e-07	29.6	0.0	1e-06	28.6	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|292654464|ref|YP_003534361.1|	-	0.062	12.0	0.0	0.083	11.6	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
DUF1823	PF08853.6	gi|292654464|ref|YP_003534361.1|	-	0.076	12.7	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1823)
Cupin_2	PF07883.6	gi|292654465|ref|YP_003534362.1|	-	4.9e-18	64.3	0.2	6.3e-18	64.0	0.1	1.1	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.17	gi|292654465|ref|YP_003534362.1|	-	2.2e-09	36.8	0.0	3.2e-09	36.3	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.14	gi|292654465|ref|YP_003534362.1|	-	2.5e-06	27.2	0.0	3e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.13	gi|292654465|ref|YP_003534362.1|	-	0.00017	21.2	0.0	0.00021	20.9	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.7	gi|292654465|ref|YP_003534362.1|	-	0.0046	16.3	0.0	0.0068	15.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
ARD	PF03079.9	gi|292654465|ref|YP_003534362.1|	-	0.0061	16.5	0.0	0.0084	16.0	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
Cupin_6	PF12852.2	gi|292654465|ref|YP_003534362.1|	-	0.0085	15.7	0.0	0.0096	15.5	0.0	1.2	1	0	0	1	1	1	1	Cupin
CENP-C_C	PF11699.3	gi|292654465|ref|YP_003534362.1|	-	0.01	15.7	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
CBS	PF00571.23	gi|292654466|ref|YP_003534363.1|	-	3.2e-25	87.6	5.3	3.7e-16	58.6	0.3	2.3	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.17	gi|292654466|ref|YP_003534363.1|	-	5.1e-22	77.7	12.7	8.2e-17	60.7	2.4	2.8	1	1	2	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.1	gi|292654466|ref|YP_003534363.1|	-	2.3e-06	27.1	1.3	2.3e-06	27.1	0.9	2.5	1	1	2	3	3	3	1	Peptidase	M50B-like
Peptidase_MA_2	PF13485.1	gi|292654466|ref|YP_003534363.1|	-	0.14	12.2	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
MoCF_biosynth	PF00994.19	gi|292654467|ref|YP_003534364.1|	-	5.5e-34	116.6	0.1	8.2e-34	116.0	0.1	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
RHH_1	PF01402.16	gi|292654470|ref|YP_003534367.1|	-	1.1e-05	25.1	0.5	3.5e-05	23.5	0.1	2.1	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF4047	PF13256.1	gi|292654470|ref|YP_003534367.1|	-	0.0061	16.5	1.3	0.0079	16.1	0.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4047)
DUF3562	PF12085.3	gi|292654470|ref|YP_003534367.1|	-	0.026	14.3	0.6	0.063	13.1	0.1	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3562)
ANTAR	PF03861.9	gi|292654470|ref|YP_003534367.1|	-	0.058	12.9	0.2	1.3	8.6	0.0	2.3	2	0	0	2	2	2	0	ANTAR	domain
MCR_gamma	PF02240.11	gi|292654470|ref|YP_003534367.1|	-	0.086	11.9	1.1	9.2	5.3	0.1	2.6	2	1	0	3	3	3	0	Methyl-coenzyme	M	reductase	gamma	subunit
zf-Mss51	PF13824.1	gi|292654470|ref|YP_003534367.1|	-	0.17	11.7	4.5	0.23	11.3	1.5	2.1	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF972	PF06156.8	gi|292654470|ref|YP_003534367.1|	-	0.34	11.2	2.2	0.56	10.5	1.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
PqqD	PF05402.7	gi|292654472|ref|YP_003534369.1|	-	0.064	13.2	2.0	0.39	10.7	0.6	2.4	1	1	1	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
DUF1668	PF07893.8	gi|292654473|ref|YP_003534370.1|	-	0.0046	16.1	0.1	0.0053	15.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1668)
NTP_transferase	PF00483.18	gi|292654474|ref|YP_003534371.1|	-	1.6e-40	138.9	0.0	3.6e-40	137.8	0.0	1.5	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|292654474|ref|YP_003534371.1|	-	2.2e-09	37.5	2.3	4.5e-09	36.5	1.1	2.2	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
MannoseP_isomer	PF01050.13	gi|292654474|ref|YP_003534371.1|	-	0.00012	21.6	0.2	0.00021	20.9	0.1	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
adh_short_C2	PF13561.1	gi|292654476|ref|YP_003534373.1|	-	1.5e-27	96.9	0.0	1.9e-27	96.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|292654476|ref|YP_003534373.1|	-	5.6e-19	68.6	3.4	6.6e-19	68.4	2.1	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|292654476|ref|YP_003534373.1|	-	1.2e-09	38.1	0.7	2e-09	37.3	0.5	1.4	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|292654476|ref|YP_003534373.1|	-	0.00034	20.6	1.6	0.00059	19.8	1.1	1.4	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292654476|ref|YP_003534373.1|	-	0.072	12.5	0.0	0.1	11.9	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
F420_oxidored	PF03807.12	gi|292654476|ref|YP_003534373.1|	-	0.088	13.2	0.1	0.22	11.9	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Nitro_FeMo-Co	PF02579.12	gi|292654476|ref|YP_003534373.1|	-	0.15	12.1	1.7	4.7	7.3	0.1	3.0	2	1	1	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
TFX_C	PF14601.1	gi|292654477|ref|YP_003534374.1|	-	3e-33	113.4	0.0	4.4e-33	112.9	0.0	1.3	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.11	gi|292654477|ref|YP_003534374.1|	-	6.2e-05	22.2	0.3	6.2e-05	22.2	0.2	1.7	2	0	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.14	gi|292654477|ref|YP_003534374.1|	-	0.0013	17.9	0.1	0.0022	17.2	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.1	gi|292654477|ref|YP_003534374.1|	-	0.0061	16.1	0.2	0.018	14.6	0.2	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_37	PF13744.1	gi|292654477|ref|YP_003534374.1|	-	0.029	14.1	0.0	0.072	12.8	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF2481	PF10654.4	gi|292654477|ref|YP_003534374.1|	-	0.035	13.7	0.0	0.055	13.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2481)
HTH_31	PF13560.1	gi|292654477|ref|YP_003534374.1|	-	0.038	14.2	1.2	0.087	13.0	0.5	1.9	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292654477|ref|YP_003534374.1|	-	0.068	12.9	0.1	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
RepB	PF07506.6	gi|292654477|ref|YP_003534374.1|	-	0.074	12.9	0.1	0.11	12.3	0.1	1.2	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
MarR_2	PF12802.2	gi|292654477|ref|YP_003534374.1|	-	0.089	12.4	0.3	0.19	11.4	0.2	1.5	1	0	0	1	1	1	0	MarR	family
HTH_3	PF01381.17	gi|292654477|ref|YP_003534374.1|	-	0.097	12.5	0.1	0.17	11.7	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix
TRAM	PF01938.15	gi|292654478|ref|YP_003534375.1|	-	1e-09	38.0	0.4	1.4e-09	37.5	0.3	1.2	1	0	0	1	1	1	1	TRAM	domain
PilI	PF10623.4	gi|292654478|ref|YP_003534375.1|	-	0.093	12.6	0.0	0.24	11.3	0.0	1.6	2	0	0	2	2	2	0	Plasmid	conjugative	transfer	protein	PilI
Radical_SAM	PF04055.16	gi|292654480|ref|YP_003534377.1|	-	5.3e-06	26.6	0.6	0.00028	21.0	0.1	2.4	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|292654480|ref|YP_003534377.1|	-	6.9e-06	26.0	0.1	1.2e-05	25.3	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|292654480|ref|YP_003534377.1|	-	0.00026	21.1	0.0	0.00052	20.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PAS_3	PF08447.6	gi|292654481|ref|YP_003534378.1|	-	2.1e-19	69.4	0.1	9.3e-13	48.0	0.0	2.4	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.1	gi|292654481|ref|YP_003534378.1|	-	3e-18	66.1	0.7	2e-09	37.7	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.21	gi|292654481|ref|YP_003534378.1|	-	6.8e-16	57.9	0.0	1.7e-15	56.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.19	gi|292654481|ref|YP_003534378.1|	-	1.2e-13	50.8	0.4	2e-07	30.8	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.19	gi|292654481|ref|YP_003534378.1|	-	1.3e-12	47.7	0.1	4.8e-12	45.8	0.1	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.1	gi|292654481|ref|YP_003534378.1|	-	1.3e-10	40.7	0.4	0.00046	19.9	0.0	3.1	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|292654481|ref|YP_003534378.1|	-	1.4e-09	37.9	0.9	0.001	19.0	0.1	3.3	2	1	0	2	2	2	2	PAS	fold
HisKA	PF00512.20	gi|292654481|ref|YP_003534378.1|	-	1.8e-08	34.2	1.9	7.7e-08	32.2	1.3	2.2	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.1	gi|292654481|ref|YP_003534378.1|	-	0.00039	20.1	0.6	0.0076	16.0	0.0	2.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_11	PF14598.1	gi|292654481|ref|YP_003534378.1|	-	0.019	14.8	0.0	0.078	12.9	0.0	1.9	2	0	0	2	2	2	0	PAS	domain
DUF373	PF04123.8	gi|292654482|ref|YP_003534379.1|	-	2.4e-114	381.9	6.3	2.9e-114	381.6	4.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
polyprenyl_synt	PF00348.12	gi|292654483|ref|YP_003534380.1|	-	2.8e-55	186.9	0.0	3.3e-55	186.7	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
Pertus-S4-tox	PF09275.5	gi|292654483|ref|YP_003534380.1|	-	0.058	13.4	0.1	0.17	11.9	0.0	1.7	2	0	0	2	2	2	0	Pertussis	toxin	S4	subunit
ETF_alpha	PF00766.14	gi|292654484|ref|YP_003534381.1|	-	2.9e-37	126.1	0.6	1.6e-36	123.7	0.2	2.1	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|292654484|ref|YP_003534381.1|	-	1.2e-30	106.3	2.9	1.2e-30	106.3	2.0	1.7	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
Methyltransf_6	PF03737.10	gi|292654484|ref|YP_003534381.1|	-	0.021	14.6	0.7	7.3	6.4	0.1	2.9	3	0	0	3	3	3	0	Demethylmenaquinone	methyltransferase
ETF	PF01012.16	gi|292654485|ref|YP_003534382.1|	-	3.7e-35	121.0	3.9	5.5e-35	120.5	2.7	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
HTH_IclR	PF09339.5	gi|292654486|ref|YP_003534383.1|	-	0.04	13.5	0.0	0.14	11.7	0.0	2.0	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF4330	PF14221.1	gi|292654486|ref|YP_003534383.1|	-	0.07	12.9	0.4	2.8	7.7	0.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4330)
HTH_15	PF12324.3	gi|292654486|ref|YP_003534383.1|	-	0.076	12.6	0.6	6	6.5	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
DUF3481	PF11980.3	gi|292654486|ref|YP_003534383.1|	-	0.088	12.6	0.4	0.17	11.7	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3481)
HTH_24	PF13412.1	gi|292654486|ref|YP_003534383.1|	-	0.094	12.1	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF1628	PF07790.6	gi|292654488|ref|YP_003534385.1|	-	1e-07	32.6	0.2	2.5e-07	31.3	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
Methyltransf_11	PF08241.7	gi|292654489|ref|YP_003534386.1|	-	2.1e-22	79.4	0.0	3.2e-22	78.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654489|ref|YP_003534386.1|	-	9e-17	61.0	0.0	1.1e-16	60.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654489|ref|YP_003534386.1|	-	1.3e-16	60.7	0.0	1.7e-16	60.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292654489|ref|YP_003534386.1|	-	2.3e-16	59.6	0.0	4e-13	49.0	0.0	2.0	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|292654489|ref|YP_003534386.1|	-	6.5e-15	55.3	0.0	1.1e-14	54.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292654489|ref|YP_003534386.1|	-	5.6e-13	49.2	0.0	8.7e-13	48.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654489|ref|YP_003534386.1|	-	1.4e-12	48.1	0.0	2.1e-12	47.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654489|ref|YP_003534386.1|	-	1.6e-08	34.5	0.0	3.6e-08	33.4	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292654489|ref|YP_003534386.1|	-	2.4e-07	30.0	0.0	3.2e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PCMT	PF01135.14	gi|292654489|ref|YP_003534386.1|	-	4.1e-06	26.4	0.0	6.7e-06	25.7	0.0	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|292654489|ref|YP_003534386.1|	-	4.1e-06	26.0	0.0	5.6e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.7	gi|292654489|ref|YP_003534386.1|	-	9.9e-05	21.7	0.0	0.0002	20.8	0.0	1.5	1	1	1	2	2	2	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.9	gi|292654489|ref|YP_003534386.1|	-	0.00034	20.0	0.0	0.00055	19.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.6	gi|292654489|ref|YP_003534386.1|	-	0.0028	16.3	0.0	0.0039	15.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_24	PF13578.1	gi|292654489|ref|YP_003534386.1|	-	0.016	16.0	0.0	0.032	15.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
NodS	PF05401.6	gi|292654489|ref|YP_003534386.1|	-	0.019	14.3	0.0	0.023	14.0	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_29	PF03141.11	gi|292654489|ref|YP_003534386.1|	-	0.03	12.6	0.0	0.038	12.3	0.0	1.2	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
ATP-synt_B	PF00430.13	gi|292654490|ref|YP_003534387.1|	-	7.2e-06	25.8	22.0	1.1e-05	25.2	15.1	1.4	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
HrpE	PF06188.7	gi|292654490|ref|YP_003534387.1|	-	0.00021	21.1	9.7	0.00025	20.8	6.7	1.0	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
Ish1	PF10281.4	gi|292654490|ref|YP_003534387.1|	-	0.013	15.5	0.1	5.4	7.1	0.0	2.3	2	0	0	2	2	2	0	Putative	stress-responsive	nuclear	envelope	protein
DivIVA	PF05103.8	gi|292654490|ref|YP_003534387.1|	-	0.022	14.8	14.8	0.058	13.4	8.3	2.0	1	1	1	2	2	2	0	DivIVA	protein
DUF3552	PF12072.3	gi|292654490|ref|YP_003534387.1|	-	0.039	13.1	23.4	0.11	11.6	16.2	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
V-ATPase_G	PF03179.10	gi|292654490|ref|YP_003534387.1|	-	0.044	14.0	17.9	0.077	13.3	12.4	1.5	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
DUF2240	PF09999.4	gi|292654490|ref|YP_003534387.1|	-	0.17	11.3	6.5	0.11	11.9	2.5	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
Nairo_nucleo	PF02477.10	gi|292654490|ref|YP_003534387.1|	-	0.25	9.9	1.5	0.61	8.7	0.0	1.8	1	1	1	2	2	2	0	Nucleocapsid	N	protein
DUF342	PF03961.8	gi|292654490|ref|YP_003534387.1|	-	0.42	8.9	5.0	0.51	8.7	3.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DUF615	PF04751.9	gi|292654490|ref|YP_003534387.1|	-	0.47	10.0	11.7	1.9	8.1	2.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF615)
vATP-synt_E	PF01991.13	gi|292654490|ref|YP_003534387.1|	-	0.6	9.3	22.4	1.9	7.7	15.4	2.1	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
DUF883	PF05957.8	gi|292654490|ref|YP_003534387.1|	-	0.66	10.4	14.9	3.5	8.0	3.1	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
OmpH	PF03938.9	gi|292654490|ref|YP_003534387.1|	-	0.73	9.7	12.3	0.95	9.3	8.5	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Mnd1	PF03962.10	gi|292654490|ref|YP_003534387.1|	-	1.1	8.9	8.7	1.5	8.4	6.0	1.3	1	0	0	1	1	1	0	Mnd1	family
PRKCSH-like	PF12999.2	gi|292654490|ref|YP_003534387.1|	-	1.3	8.6	6.2	4.8	6.7	2.1	2.0	1	1	1	2	2	2	0	Glucosidase	II	beta	subunit-like
NARP1	PF12569.3	gi|292654490|ref|YP_003534387.1|	-	1.3	7.6	8.3	1.5	7.4	5.7	1.0	1	0	0	1	1	1	0	NMDA	receptor-regulated	protein	1
DUF4355	PF14265.1	gi|292654490|ref|YP_003534387.1|	-	1.4	8.9	20.7	1.8	8.5	14.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4355)
Caudo_TAP	PF02413.12	gi|292654490|ref|YP_003534387.1|	-	2.1	8.4	12.1	6.1	7.0	5.5	2.1	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein
Atg14	PF10186.4	gi|292654490|ref|YP_003534387.1|	-	4.1	6.2	6.3	4.7	6.0	4.4	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IncA	PF04156.9	gi|292654490|ref|YP_003534387.1|	-	5	6.6	12.4	6	6.4	8.6	1.2	1	0	0	1	1	1	0	IncA	protein
GBP_C	PF02841.9	gi|292654490|ref|YP_003534387.1|	-	5.6	6.0	12.8	6.4	5.8	8.9	1.2	1	0	0	1	1	1	0	Guanylate-binding	protein,	C-terminal	domain
HAUS6_N	PF14661.1	gi|292654490|ref|YP_003534387.1|	-	7.5	5.8	7.5	8.3	5.6	5.2	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Remorin_C	PF03763.8	gi|292654490|ref|YP_003534387.1|	-	7.6	6.1	13.9	0.65	9.5	4.2	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
ISG65-75	PF11727.3	gi|292654490|ref|YP_003534387.1|	-	9	5.2	9.8	12	4.7	6.8	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
APG6	PF04111.7	gi|292654490|ref|YP_003534387.1|	-	9.2	5.2	12.8	12	4.8	8.8	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
V_ATPase_I	PF01496.14	gi|292654491|ref|YP_003534388.1|	-	2.3e-71	240.7	21.3	5.5e-35	120.4	4.2	4.3	3	1	1	4	4	4	4	V-type	ATPase	116kDa	subunit	family
DUF4140	PF13600.1	gi|292654491|ref|YP_003534388.1|	-	0.0078	16.6	4.6	0.12	12.8	0.7	2.4	2	0	0	2	2	2	1	N-terminal	domain	of	unknown	function	(DUF4140)
TMF_DNA_bd	PF12329.3	gi|292654491|ref|YP_003534388.1|	-	0.028	14.2	1.9	1.8	8.4	0.0	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF4200	PF13863.1	gi|292654491|ref|YP_003534388.1|	-	0.069	13.0	0.6	7.1	6.5	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Prefoldin_2	PF01920.15	gi|292654491|ref|YP_003534388.1|	-	0.11	12.2	2.7	4.1	7.2	0.1	2.2	2	0	0	2	2	2	0	Prefoldin	subunit
Tropomyosin_1	PF12718.2	gi|292654491|ref|YP_003534388.1|	-	0.14	11.9	5.3	0.87	9.4	0.7	2.2	2	0	0	2	2	2	0	Tropomyosin	like
APG6	PF04111.7	gi|292654491|ref|YP_003534388.1|	-	0.22	10.5	1.8	5.3	5.9	0.1	2.1	2	0	0	2	2	2	0	Autophagy	protein	Apg6
Tektin	PF03148.9	gi|292654491|ref|YP_003534388.1|	-	0.22	10.0	1.4	1.8	7.0	0.1	2.1	2	0	0	2	2	2	0	Tektin	family
Seryl_tRNA_N	PF02403.17	gi|292654491|ref|YP_003534388.1|	-	0.24	11.4	3.1	0.48	10.4	0.2	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Med4	PF10018.4	gi|292654491|ref|YP_003534388.1|	-	0.61	9.4	2.4	9.6	5.5	0.1	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
ATP-synt_C	PF00137.16	gi|292654492|ref|YP_003534389.1|	-	1.3e-13	50.5	7.6	1.8e-13	50.1	5.3	1.2	1	0	0	1	1	1	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.13	gi|292654493|ref|YP_003534390.1|	-	9.6e-49	165.3	10.3	1.1e-48	165.1	7.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
ATP-synt_B	PF00430.13	gi|292654493|ref|YP_003534390.1|	-	0.00049	19.9	16.2	0.00049	19.9	11.2	2.1	1	1	1	2	2	2	1	ATP	synthase	B/B'	CF(0)
HrpE	PF06188.7	gi|292654493|ref|YP_003534390.1|	-	0.0045	16.7	9.6	0.0072	16.0	6.6	1.3	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DUF3827	PF12877.2	gi|292654493|ref|YP_003534390.1|	-	0.023	12.8	3.0	0.027	12.5	2.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3827)
RHD3	PF05879.7	gi|292654493|ref|YP_003534390.1|	-	0.025	12.5	1.3	0.027	12.4	0.9	1.1	1	0	0	1	1	1	0	Root	hair	defective	3	GTP-binding	protein	(RHD3)
GCN5L1	PF06320.8	gi|292654493|ref|YP_003534390.1|	-	0.031	14.1	7.2	0.046	13.5	5.0	1.3	1	0	0	1	1	1	0	GCN5-like	protein	1	(GCN5L1)
DUF3552	PF12072.3	gi|292654493|ref|YP_003534390.1|	-	0.068	12.3	20.1	0.096	11.8	13.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
OmpH	PF03938.9	gi|292654493|ref|YP_003534390.1|	-	0.52	10.2	15.7	0.73	9.7	10.9	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
UPF0449	PF15136.1	gi|292654493|ref|YP_003534390.1|	-	1.5	9.0	8.7	3.5	7.8	6.0	1.7	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0449
DivIVA	PF05103.8	gi|292654493|ref|YP_003534390.1|	-	3.3	7.7	14.3	61	3.6	9.9	2.4	1	1	0	1	1	1	0	DivIVA	protein
M	PF02370.11	gi|292654493|ref|YP_003534390.1|	-	3.3	8.3	9.5	49	4.7	1.1	3.9	3	1	0	3	3	3	0	M	protein	repeat
DUF883	PF05957.8	gi|292654493|ref|YP_003534390.1|	-	8.3	6.8	19.0	2.4	8.6	1.0	2.7	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
vATP-synt_AC39	PF01992.11	gi|292654494|ref|YP_003534391.1|	-	3.4e-112	374.9	1.1	3.8e-112	374.7	0.8	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
ATP-synt_F	PF01990.12	gi|292654495|ref|YP_003534392.1|	-	7.7e-20	71.0	0.1	9.1e-20	70.8	0.0	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
ATP-synt_ab	PF00006.20	gi|292654496|ref|YP_003534393.1|	-	5.1e-94	313.7	0.0	7.2e-94	313.2	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|292654496|ref|YP_003534393.1|	-	2.5e-18	66.6	0.6	4e-18	65.9	0.5	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|292654496|ref|YP_003534393.1|	-	2.5e-12	46.8	3.6	2.5e-12	46.8	2.5	2.6	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
Peptidase_M23	PF01551.17	gi|292654496|ref|YP_003534393.1|	-	0.034	14.1	0.5	4.4	7.4	0.0	2.8	3	0	0	3	3	3	0	Peptidase	family	M23
DUF1932	PF09130.6	gi|292654496|ref|YP_003534393.1|	-	0.091	12.5	1.8	2.8	7.7	0.3	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1932)
AAA_22	PF13401.1	gi|292654496|ref|YP_003534393.1|	-	0.094	12.8	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|292654497|ref|YP_003534394.1|	-	2e-60	203.9	0.0	2.6e-60	203.6	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|292654497|ref|YP_003534394.1|	-	2.9e-18	66.3	0.2	6.5e-18	65.2	0.2	1.6	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|292654497|ref|YP_003534394.1|	-	3.5e-13	49.5	0.5	8.5e-13	48.3	0.4	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|292654497|ref|YP_003534394.1|	-	0.00034	20.4	1.0	0.0012	18.7	0.2	2.3	2	0	0	2	2	2	1	HAS	barrel	domain
PAS_9	PF13426.1	gi|292654498|ref|YP_003534395.1|	-	1.4e-25	89.6	0.0	3.5e-25	88.3	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
HTH_10	PF04967.7	gi|292654498|ref|YP_003534395.1|	-	7.1e-19	67.1	0.0	1.3e-18	66.3	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.19	gi|292654498|ref|YP_003534395.1|	-	2.6e-12	46.5	0.0	8.1e-12	44.9	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.5	gi|292654498|ref|YP_003534395.1|	-	2.3e-10	40.4	5.9	5.2e-10	39.3	0.1	3.6	4	0	0	4	4	4	1	PAS	fold
GAF_2	PF13185.1	gi|292654498|ref|YP_003534395.1|	-	3.2e-07	30.9	0.2	1.3e-06	29.0	0.2	2.1	1	0	0	1	1	1	1	GAF	domain
PAS_8	PF13188.1	gi|292654498|ref|YP_003534395.1|	-	3.1e-06	26.8	0.0	1.9e-05	24.3	0.0	2.4	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.6	gi|292654498|ref|YP_003534395.1|	-	6.8e-06	26.1	0.0	2.1e-05	24.5	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
HTH_11	PF08279.7	gi|292654498|ref|YP_003534395.1|	-	0.00066	19.2	0.0	0.0027	17.3	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
GAF_3	PF13492.1	gi|292654498|ref|YP_003534395.1|	-	0.00068	19.7	0.1	0.0023	18.0	0.1	2.1	1	0	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.11	gi|292654498|ref|YP_003534395.1|	-	0.0048	16.1	0.0	0.011	15.0	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.7	gi|292654498|ref|YP_003534395.1|	-	0.027	13.9	0.3	0.12	11.8	0.0	2.2	2	1	0	2	2	2	0	Sigma-70,	region	4
ATP-synt_D	PF01813.12	gi|292654499|ref|YP_003534396.1|	-	4.3e-62	209.1	12.1	5.9e-62	208.7	8.4	1.2	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DMAP1	PF05499.7	gi|292654499|ref|YP_003534396.1|	-	0.053	13.0	10.5	0.29	10.6	0.0	2.5	2	0	0	2	2	2	0	DNA	methyltransferase	1-associated	protein	1	(DMAP1)
Ribosomal_S13	PF00416.17	gi|292654499|ref|YP_003534396.1|	-	2.1	8.8	4.8	2	8.9	0.8	2.3	2	0	0	2	2	2	0	Ribosomal	protein	S13/S18
Peptidase_S49_N	PF08496.5	gi|292654499|ref|YP_003534396.1|	-	5.6	6.7	9.2	4.5	7.0	4.8	2.0	2	0	0	2	2	2	0	Peptidase	family	S49	N-terminal
HycI	PF01750.13	gi|292654500|ref|YP_003534397.1|	-	0.0058	16.1	0.0	0.0081	15.7	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
eRF1_2	PF03464.10	gi|292654501|ref|YP_003534398.1|	-	1.8e-36	125.4	0.0	5.3e-36	123.8	0.0	1.8	2	0	0	2	2	2	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|292654501|ref|YP_003534398.1|	-	3.9e-27	94.7	0.5	9.7e-27	93.4	0.1	1.9	2	0	0	2	2	2	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|292654501|ref|YP_003534398.1|	-	1.8e-24	85.8	0.0	2.9e-24	85.1	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
CbiA	PF01656.18	gi|292654502|ref|YP_003534399.1|	-	5.4e-26	91.2	1.4	5.4e-26	91.2	1.0	1.6	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|292654502|ref|YP_003534399.1|	-	1.3e-16	60.9	0.0	2.1e-16	60.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.13	gi|292654502|ref|YP_003534399.1|	-	5.1e-09	35.7	0.1	8.6e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|292654502|ref|YP_003534399.1|	-	2e-05	23.8	1.4	0.00017	20.7	0.9	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|292654502|ref|YP_003534399.1|	-	2.1e-05	23.9	0.5	0.00025	20.4	0.3	2.4	1	1	0	1	1	1	1	YhjQ	protein
ParA	PF10609.4	gi|292654502|ref|YP_003534399.1|	-	6.6e-05	22.7	0.2	0.00037	20.3	0.1	2.0	2	0	0	2	2	2	1	ParA/MinD	ATPase	like
MipZ	PF09140.6	gi|292654502|ref|YP_003534399.1|	-	0.00056	19.0	2.0	0.0091	15.1	1.4	2.3	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.1	gi|292654502|ref|YP_003534399.1|	-	0.0019	17.8	0.4	0.0019	17.8	0.3	2.4	2	1	0	2	2	2	1	AAA	domain
VirC1	PF07015.6	gi|292654502|ref|YP_003534399.1|	-	0.014	14.5	0.6	0.03	13.3	0.1	1.7	2	0	0	2	2	2	0	VirC1	protein
SRP54	PF00448.17	gi|292654502|ref|YP_003534399.1|	-	0.086	12.2	3.6	0.47	9.8	0.2	2.7	2	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ArgK	PF03308.11	gi|292654502|ref|YP_003534399.1|	-	2.2	6.9	6.7	2.6	6.7	2.6	2.2	1	1	1	2	2	2	0	ArgK	protein
AAA_10	PF12846.2	gi|292654502|ref|YP_003534399.1|	-	2.3	7.5	4.4	0.47	9.8	0.2	1.9	3	0	0	3	3	3	0	AAA-like	domain
OPT	PF03169.10	gi|292654503|ref|YP_003534400.1|	-	0.061	11.7	1.1	0.06	11.7	0.7	1.0	1	0	0	1	1	1	0	OPT	oligopeptide	transporter	protein
DUF1467	PF07330.7	gi|292654503|ref|YP_003534400.1|	-	1.3	8.8	3.9	1.1	9.1	1.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1467)
tRNA-synt_1d	PF00750.14	gi|292654504|ref|YP_003534401.1|	-	1.8e-57	194.7	0.1	2.8e-57	194.1	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|292654504|ref|YP_003534401.1|	-	2.4e-35	121.0	0.0	7.8e-35	119.4	0.0	1.9	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|292654504|ref|YP_003534401.1|	-	2.5e-10	40.7	0.0	9e-10	38.9	0.0	2.0	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.13	gi|292654504|ref|YP_003534401.1|	-	3.9e-05	22.4	0.0	0.22	10.1	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
PhnA_Zn_Ribbon	PF08274.7	gi|292654505|ref|YP_003534402.1|	-	0.0054	16.4	0.2	0.012	15.3	0.1	1.6	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
zf-Sec23_Sec24	PF04810.10	gi|292654505|ref|YP_003534402.1|	-	0.0061	16.0	1.2	0.01	15.3	0.8	1.4	1	1	0	1	1	1	1	Sec23/Sec24	zinc	finger
DZR	PF12773.2	gi|292654505|ref|YP_003534402.1|	-	0.0082	15.9	0.3	0.0091	15.8	0.2	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RING_3	PF14369.1	gi|292654505|ref|YP_003534402.1|	-	0.014	15.3	2.7	0.55	10.2	1.9	2.2	1	1	0	1	1	1	0	zinc-finger
Copper-fist	PF00649.13	gi|292654505|ref|YP_003534402.1|	-	0.032	13.4	2.1	3.8	6.7	0.1	2.2	2	0	0	2	2	2	0	Copper	fist	DNA	binding	domain
DUF3268	PF11672.3	gi|292654505|ref|YP_003534402.1|	-	0.057	13.4	0.6	0.11	12.6	0.4	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3268)
C1_1	PF00130.17	gi|292654505|ref|YP_003534402.1|	-	0.062	13.0	0.3	0.083	12.6	0.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ribbon_3	PF13248.1	gi|292654505|ref|YP_003534402.1|	-	0.065	12.4	1.3	1.2	8.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|292654505|ref|YP_003534402.1|	-	0.13	12.6	1.4	7.3	7.1	0.0	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-H2C2_5	PF13909.1	gi|292654505|ref|YP_003534402.1|	-	0.15	12.3	0.4	0.15	12.3	0.3	2.2	2	0	0	2	2	2	0	C2H2-type	zinc-finger	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654505|ref|YP_003534402.1|	-	0.2	11.5	1.2	3.7	7.4	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DUF1610	PF07754.6	gi|292654505|ref|YP_003534402.1|	-	0.2	11.8	0.3	0.2	11.8	0.2	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
CTP-dep_RFKase	PF01982.11	gi|292654506|ref|YP_003534403.1|	-	6.9e-43	145.1	0.0	9.7e-43	144.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_20	PF12840.2	gi|292654506|ref|YP_003534403.1|	-	5.8e-07	29.2	0.0	1.2e-06	28.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654506|ref|YP_003534403.1|	-	8.4e-06	25.3	0.2	2.7e-05	23.7	0.1	1.8	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|292654506|ref|YP_003534403.1|	-	0.00021	20.9	0.0	0.00034	20.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292654506|ref|YP_003534403.1|	-	0.00082	18.7	0.0	0.0016	17.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|292654506|ref|YP_003534403.1|	-	0.0013	18.4	0.0	0.0027	17.4	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_1	PF00126.22	gi|292654506|ref|YP_003534403.1|	-	0.0019	17.8	0.0	0.0046	16.6	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_AsnC-type	PF13404.1	gi|292654506|ref|YP_003534403.1|	-	0.003	17.0	0.2	0.011	15.2	0.1	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292654506|ref|YP_003534403.1|	-	0.017	14.6	0.1	0.031	13.8	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292654506|ref|YP_003534403.1|	-	0.024	14.5	0.0	0.047	13.6	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|292654506|ref|YP_003534403.1|	-	0.029	14.0	0.0	0.05	13.3	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_30	PF13556.1	gi|292654506|ref|YP_003534403.1|	-	0.03	13.8	0.0	0.079	12.5	0.0	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_34	PF13601.1	gi|292654506|ref|YP_003534403.1|	-	0.035	14.1	0.0	0.11	12.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|292654506|ref|YP_003534403.1|	-	0.036	14.4	0.0	0.064	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|292654506|ref|YP_003534403.1|	-	0.038	13.6	0.0	0.071	12.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
DHBP_synthase	PF00926.14	gi|292654507|ref|YP_003534404.1|	-	8.8e-59	197.9	0.0	9.9e-59	197.8	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Epimerase	PF01370.16	gi|292654508|ref|YP_003534405.1|	-	3e-23	82.4	0.0	4.1e-23	82.0	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|292654508|ref|YP_003534405.1|	-	4.6e-13	49.5	1.6	7.1e-13	48.9	0.6	1.7	1	1	1	2	2	2	1	NADH(P)-binding
3Beta_HSD	PF01073.14	gi|292654508|ref|YP_003534405.1|	-	6.8e-09	34.8	0.0	1e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|292654508|ref|YP_003534405.1|	-	9.2e-07	28.0	0.1	1.2e-06	27.6	0.1	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|292654508|ref|YP_003534405.1|	-	2.2e-06	26.7	0.0	0.0012	17.7	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
KR	PF08659.5	gi|292654508|ref|YP_003534405.1|	-	4.3e-05	23.2	2.2	0.068	12.8	0.0	2.6	2	1	1	3	3	3	2	KR	domain
adh_short	PF00106.20	gi|292654508|ref|YP_003534405.1|	-	0.00022	21.2	6.6	0.00091	19.1	1.8	2.8	2	1	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|292654508|ref|YP_003534405.1|	-	0.00079	18.7	0.1	0.0013	18.0	0.1	1.5	1	0	0	1	1	1	1	NmrA-like	family
Polysacc_synt_2	PF02719.10	gi|292654508|ref|YP_003534405.1|	-	0.0013	17.7	0.7	0.17	10.7	0.3	3.1	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	protein
Aminotran_4	PF01063.14	gi|292654509|ref|YP_003534406.1|	-	1.6e-46	158.6	0.0	1.9e-46	158.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	IV
DUF502	PF04367.8	gi|292654510|ref|YP_003534407.1|	-	2.4e-20	72.2	1.9	3.6e-20	71.7	0.2	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
AA_permease	PF00324.16	gi|292654510|ref|YP_003534407.1|	-	0.0056	15.0	3.8	0.0073	14.7	2.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
UPF0546	PF10639.4	gi|292654510|ref|YP_003534407.1|	-	0.11	12.2	2.7	0.55	10.0	1.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0546
DUF1600	PF07667.6	gi|292654510|ref|YP_003534407.1|	-	1.2	9.2	6.8	2.1	8.4	4.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1600)
Pro_dh	PF01619.13	gi|292654511|ref|YP_003534408.1|	-	9.8e-38	129.8	0.1	4.4e-37	127.7	0.1	1.8	1	1	0	1	1	1	1	Proline	dehydrogenase
DUF46	PF01864.12	gi|292654512|ref|YP_003534409.1|	-	1.2e-48	165.3	1.1	1.4e-48	165.1	0.8	1.0	1	0	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|292654512|ref|YP_003534409.1|	-	1.3e-06	28.2	0.9	1.3e-06	28.2	0.6	2.1	1	1	1	2	2	2	1	Cytidylyltransferase	family
SNARE_assoc	PF09335.6	gi|292654512|ref|YP_003534409.1|	-	5.1	7.3	11.3	0.41	10.8	2.2	2.6	1	1	1	2	2	2	0	SNARE	associated	Golgi	protein
Gly-zipper_OmpA	PF13436.1	gi|292654512|ref|YP_003534409.1|	-	7.1	6.3	10.8	36	4.0	7.4	2.1	1	1	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Pribosyltran	PF00156.22	gi|292654513|ref|YP_003534410.1|	-	2e-11	43.7	7.2	7e-11	41.9	5.0	1.9	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|292654513|ref|YP_003534410.1|	-	0.00017	20.8	0.1	0.00023	20.4	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|292654513|ref|YP_003534410.1|	-	0.015	14.6	0.9	0.025	13.8	0.2	1.6	1	1	1	2	2	2	0	Phosphoribosyl	transferase
Pribosyltran	PF00156.22	gi|292654514|ref|YP_003534411.1|	-	2.7e-13	49.7	0.3	3.9e-13	49.2	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.17	gi|292654514|ref|YP_003534411.1|	-	0.0051	16.6	0.0	0.0099	15.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|292654514|ref|YP_003534411.1|	-	0.041	14.0	0.5	0.1	12.8	0.4	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Xan_ur_permease	PF00860.15	gi|292654515|ref|YP_003534412.1|	-	5.8e-37	127.0	43.5	5.8e-37	127.0	30.2	1.4	2	0	0	2	2	2	1	Permease	family
Arylsulfotrans	PF05935.6	gi|292654516|ref|YP_003534413.1|	-	2.5e-11	42.7	6.6	3.8e-10	38.9	2.5	2.2	1	1	0	2	2	2	2	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.1	gi|292654516|ref|YP_003534413.1|	-	8e-08	31.7	0.5	9.7e-06	24.9	0.2	2.8	2	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
DUF504	PF04457.7	gi|292654516|ref|YP_003534413.1|	-	0.049	13.7	0.1	0.15	12.2	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF504)
PQQ	PF01011.16	gi|292654516|ref|YP_003534413.1|	-	0.27	10.8	2.9	1.2	8.7	0.2	3.1	3	0	0	3	3	3	0	PQQ	enzyme	repeat
NHL	PF01436.16	gi|292654516|ref|YP_003534413.1|	-	0.49	10.4	4.7	3.3	7.8	0.0	3.8	4	0	0	4	4	4	0	NHL	repeat
Glutaredoxin	PF00462.19	gi|292654517|ref|YP_003534414.1|	-	9.3e-13	47.9	0.0	1.4e-12	47.3	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.1	gi|292654517|ref|YP_003534414.1|	-	1.1e-11	44.8	0.0	1.2e-11	44.6	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.1	gi|292654517|ref|YP_003534414.1|	-	3.5e-07	30.1	0.0	4.2e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|292654517|ref|YP_003534414.1|	-	0.0034	17.6	0.2	0.0037	17.4	0.1	1.4	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.1	gi|292654517|ref|YP_003534414.1|	-	0.05	13.8	0.1	0.094	12.9	0.1	1.7	1	1	0	1	1	1	0	Thioredoxin-like	domain
HTH_3	PF01381.17	gi|292654518|ref|YP_003534415.1|	-	1.4e-12	47.2	0.0	2.3e-12	46.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|292654518|ref|YP_003534415.1|	-	5e-08	33.0	0.1	1.4e-07	31.6	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|292654518|ref|YP_003534415.1|	-	2.1e-07	30.9	0.0	3.6e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|292654518|ref|YP_003534415.1|	-	0.00011	21.6	0.0	0.0003	20.3	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_25	PF13413.1	gi|292654518|ref|YP_003534415.1|	-	0.00013	21.5	0.0	0.00024	20.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292654518|ref|YP_003534415.1|	-	0.00019	20.9	0.0	0.00051	19.6	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_28	PF13518.1	gi|292654518|ref|YP_003534415.1|	-	0.0022	17.9	0.1	0.0043	17.0	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|292654518|ref|YP_003534415.1|	-	0.0059	15.8	0.1	0.012	14.9	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_37	PF13744.1	gi|292654518|ref|YP_003534415.1|	-	0.049	13.4	0.0	0.39	10.5	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|292654518|ref|YP_003534415.1|	-	0.066	13.0	0.0	0.72	9.7	0.0	2.6	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|292654518|ref|YP_003534415.1|	-	0.069	12.7	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|292654518|ref|YP_003534415.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
NUMOD1	PF07453.8	gi|292654518|ref|YP_003534415.1|	-	0.19	11.6	0.0	0.32	10.9	0.0	1.4	1	0	0	1	1	1	0	NUMOD1	domain
DUF1743	PF08489.6	gi|292654519|ref|YP_003534416.1|	-	7.6e-34	115.9	0.0	1.3e-33	115.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
tRNA_anti-codon	PF01336.20	gi|292654519|ref|YP_003534416.1|	-	0.0047	16.7	0.0	0.0094	15.7	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654519|ref|YP_003534416.1|	-	0.0056	16.4	1.6	0.012	15.4	1.1	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
IBR	PF01485.16	gi|292654519|ref|YP_003534416.1|	-	0.011	15.6	0.1	0.017	15.0	0.1	1.3	1	0	0	1	1	1	0	IBR	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654519|ref|YP_003534416.1|	-	0.014	15.0	0.7	0.032	13.9	0.5	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|292654519|ref|YP_003534416.1|	-	0.046	13.6	2.5	3.6	7.6	0.1	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|292654519|ref|YP_003534416.1|	-	0.048	13.4	0.4	0.12	12.2	0.3	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
tRNA_anti_2	PF13742.1	gi|292654519|ref|YP_003534416.1|	-	0.054	13.3	0.0	0.095	12.5	0.0	1.3	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
C1_1	PF00130.17	gi|292654519|ref|YP_003534416.1|	-	0.099	12.3	0.1	0.17	11.6	0.1	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HypA	PF01155.14	gi|292654519|ref|YP_003534416.1|	-	0.21	11.2	0.4	0.41	10.3	0.3	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_ribbon_recom	PF13408.1	gi|292654519|ref|YP_003534416.1|	-	0.21	11.8	1.3	0.47	10.7	0.9	1.5	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-C2H2	PF00096.21	gi|292654519|ref|YP_003534416.1|	-	0.48	10.8	2.8	9.7	6.7	0.1	2.7	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Big_1	PF02369.11	gi|292654520|ref|YP_003534417.1|	-	2.8e-06	27.1	0.7	3.9e-06	26.6	0.5	1.3	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.1	gi|292654520|ref|YP_003534417.1|	-	4.8e-05	23.3	1.2	8.9e-05	22.4	0.8	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF4198	PF10670.4	gi|292654520|ref|YP_003534417.1|	-	0.0072	16.3	0.8	0.0097	15.9	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4198)
YtkA	PF13115.1	gi|292654520|ref|YP_003534417.1|	-	0.044	14.1	0.4	0.071	13.4	0.3	1.5	1	1	0	1	1	1	0	YtkA-like
DUF824	PF05688.6	gi|292654520|ref|YP_003534417.1|	-	0.072	12.7	0.0	0.23	11.1	0.0	1.8	1	0	0	1	1	1	0	Salmonella	repeat	of	unknown	function	(DUF824)
DUF4480	PF13715.1	gi|292654520|ref|YP_003534417.1|	-	0.091	12.8	0.2	0.15	12.1	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4480)
AAA_10	PF12846.2	gi|292654521|ref|YP_003534418.1|	-	3.4e-13	49.7	0.0	3.2e-07	30.0	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
DUF853	PF05872.7	gi|292654521|ref|YP_003534418.1|	-	8.9e-08	30.9	0.2	0.0044	15.4	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
DUF87	PF01935.12	gi|292654521|ref|YP_003534418.1|	-	1.3e-05	25.1	0.0	2.7e-05	24.1	0.0	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
FtsK_SpoIIIE	PF01580.13	gi|292654521|ref|YP_003534418.1|	-	0.00018	21.0	0.1	0.016	14.6	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.4	gi|292654521|ref|YP_003534418.1|	-	0.00041	19.0	0.0	0.57	8.7	0.0	2.1	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|292654521|ref|YP_003534418.1|	-	0.011	15.8	0.0	3.3	7.8	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|292654521|ref|YP_003534418.1|	-	0.063	12.3	0.2	0.13	11.2	0.1	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_30	PF13604.1	gi|292654521|ref|YP_003534418.1|	-	0.089	12.3	0.1	0.18	11.3	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
Helicase_RecD	PF05127.9	gi|292654521|ref|YP_003534418.1|	-	0.15	11.6	0.1	0.27	10.8	0.1	1.4	1	0	0	1	1	1	0	Helicase
AAA_16	PF13191.1	gi|292654521|ref|YP_003534418.1|	-	0.15	11.9	1.6	0.77	9.7	1.1	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
CRCB	PF02537.10	gi|292654522|ref|YP_003534419.1|	-	5.2e-20	71.4	17.1	5.9e-20	71.3	11.8	1.0	1	0	0	1	1	1	1	CrcB-like	protein
SpecificRecomb	PF10136.4	gi|292654522|ref|YP_003534419.1|	-	0.0042	15.2	1.8	0.0042	15.2	1.2	1.6	1	1	1	2	2	2	1	Site-specific	recombinase
PH_7	PF15408.1	gi|292654522|ref|YP_003534419.1|	-	0.046	13.5	0.1	0.077	12.8	0.1	1.4	1	1	0	1	1	1	0	Pleckstrin	homology	domain
Bacteriocin_IIc	PF10439.4	gi|292654522|ref|YP_003534419.1|	-	2.4	8.3	6.3	1.7	8.7	0.3	2.3	2	0	0	2	2	2	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
CRCB	PF02537.10	gi|292654523|ref|YP_003534420.1|	-	1.7e-21	76.2	12.9	2.1e-21	75.9	8.9	1.1	1	0	0	1	1	1	1	CrcB-like	protein
Dispanin	PF04505.7	gi|292654523|ref|YP_003534420.1|	-	0.61	9.6	3.0	0.19	11.2	0.3	1.7	2	0	0	2	2	2	0	Interferon-induced	transmembrane	protein
DUF456	PF04306.8	gi|292654523|ref|YP_003534420.1|	-	1.8	8.6	15.9	2.6	8.0	11.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF456)
RNA_pol_Rpb5_C	PF01191.14	gi|292654524|ref|YP_003534421.1|	-	4e-26	90.4	1.0	4.4e-26	90.2	0.7	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.3	gi|292654524|ref|YP_003534421.1|	-	0.0049	16.5	0.3	0.081	12.6	0.2	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
RHH_3	PF12651.2	gi|292654524|ref|YP_003534421.1|	-	0.0082	15.8	0.1	0.028	14.1	0.1	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	domain
Rad50_zn_hook	PF04423.9	gi|292654524|ref|YP_003534421.1|	-	0.074	12.5	0.1	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
RNA_pol_Rpb2_1	PF04563.10	gi|292654525|ref|YP_003534422.1|	-	3.1e-53	179.7	0.0	3.7e-53	179.4	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|292654525|ref|YP_003534422.1|	-	7.1e-28	97.3	0.1	1.1e-27	96.7	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.11	gi|292654525|ref|YP_003534422.1|	-	4.4e-23	80.8	0.0	8.6e-23	79.8	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_6	PF00562.23	gi|292654526|ref|YP_003534423.1|	-	1.8e-122	408.8	0.0	2.5e-122	408.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_4	PF04566.8	gi|292654526|ref|YP_003534423.1|	-	9.4e-27	92.6	1.4	6.4e-26	89.9	0.7	2.4	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_7	PF04560.15	gi|292654526|ref|YP_003534423.1|	-	2.3e-25	88.6	0.0	4.1e-25	87.8	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_5	PF04567.12	gi|292654526|ref|YP_003534423.1|	-	1.8e-12	47.0	3.3	4.2e-12	45.8	2.3	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb1_1	PF04997.7	gi|292654527|ref|YP_003534424.1|	-	2.7e-87	293.1	0.0	4.7e-87	292.3	0.0	1.4	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|292654527|ref|YP_003534424.1|	-	1.1e-65	220.6	0.1	1.7e-65	219.9	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.12	gi|292654527|ref|YP_003534424.1|	-	3.1e-31	107.3	0.0	6.7e-31	106.2	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.13	gi|292654527|ref|YP_003534424.1|	-	6.3e-29	100.7	0.0	1.1e-28	99.9	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.12	gi|292654527|ref|YP_003534424.1|	-	7.8e-29	100.7	0.0	1.7e-28	99.6	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
zf-ribbon_3	PF13248.1	gi|292654527|ref|YP_003534424.1|	-	0.2	10.9	4.9	0.039	13.1	0.2	2.3	2	1	0	2	2	2	0	zinc-ribbon	domain
RNA_pol_Rpb1_5	PF04998.12	gi|292654528|ref|YP_003534425.1|	-	4.3e-49	167.2	0.3	5.5e-49	166.8	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
KH_2	PF07650.12	gi|292654529|ref|YP_003534426.1|	-	5.1e-15	54.7	0.0	2e-08	33.6	0.0	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|292654529|ref|YP_003534426.1|	-	1.8e-11	43.6	0.0	4.2e-11	42.4	0.0	1.6	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.1	gi|292654529|ref|YP_003534426.1|	-	4.3e-06	26.2	0.0	0.0076	15.8	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|292654529|ref|YP_003534426.1|	-	9e-05	22.0	0.0	0.015	14.8	0.0	2.3	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|292654529|ref|YP_003534426.1|	-	0.15	11.7	0.3	5.1	6.8	0.0	2.6	2	0	0	2	2	2	0	KH	domain
YadA_head	PF05658.9	gi|292654529|ref|YP_003534426.1|	-	5.5	7.4	6.0	12	6.3	0.4	2.4	2	0	0	2	2	2	0	Head	domain	of	trimeric	autotransporter	adhesin
MS_channel	PF00924.13	gi|292654530|ref|YP_003534427.1|	-	1.1e-28	99.9	0.2	1.7e-28	99.3	0.0	1.3	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
DUF308	PF03729.8	gi|292654530|ref|YP_003534427.1|	-	0.048	13.6	1.0	0.14	12.1	0.8	1.7	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
Ribosom_S12_S23	PF00164.20	gi|292654531|ref|YP_003534428.1|	-	7.1e-41	138.4	0.2	8.2e-41	138.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.16	gi|292654532|ref|YP_003534429.1|	-	1.3e-35	122.2	2.1	1.5e-35	121.9	1.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
GTP_EFTU	PF00009.22	gi|292654534|ref|YP_003534431.1|	-	1.5e-61	207.1	0.1	2.3e-61	206.5	0.1	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|292654534|ref|YP_003534431.1|	-	6.4e-24	83.8	0.0	2e-23	82.1	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.19	gi|292654534|ref|YP_003534431.1|	-	7.7e-24	83.3	0.0	2.7e-23	81.6	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.1	gi|292654534|ref|YP_003534431.1|	-	6.1e-22	77.2	2.0	6.1e-22	77.2	0.2	2.0	2	0	0	2	2	2	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.20	gi|292654534|ref|YP_003534431.1|	-	1.8e-14	53.5	3.3	2.9e-14	52.9	0.8	2.7	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|292654534|ref|YP_003534431.1|	-	6.3e-05	22.9	0.1	0.00023	21.1	0.0	2.0	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
DUF3093	PF11292.3	gi|292654534|ref|YP_003534431.1|	-	0.17	11.7	0.0	0.48	10.2	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3093)
ACT	PF01842.20	gi|292654535|ref|YP_003534432.1|	-	1.2e-08	34.1	0.2	0.0054	16.1	0.1	2.5	2	0	0	2	2	2	2	ACT	domain
ACT_6	PF13740.1	gi|292654535|ref|YP_003534432.1|	-	0.11	12.2	0.0	0.35	10.6	0.0	1.8	2	0	0	2	2	2	0	ACT	domain
ACT_4	PF13291.1	gi|292654535|ref|YP_003534432.1|	-	0.14	12.5	0.0	9.2	6.6	0.0	2.8	2	1	1	3	3	3	0	ACT	domain
Homoserine_dh	PF00742.14	gi|292654536|ref|YP_003534433.1|	-	3.8e-48	163.5	0.3	4.9e-48	163.1	0.2	1.1	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.11	gi|292654536|ref|YP_003534433.1|	-	3.9e-08	33.6	0.1	1e-07	32.3	0.1	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|292654536|ref|YP_003534433.1|	-	1.6e-06	27.9	0.0	3.4e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GTP_EFTU	PF00009.22	gi|292654537|ref|YP_003534434.1|	-	5.3e-57	192.2	0.0	7.2e-57	191.8	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|292654537|ref|YP_003534434.1|	-	1.7e-31	108.3	0.1	5.4e-31	106.7	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|292654537|ref|YP_003534434.1|	-	1.1e-18	67.1	3.2	6.1e-18	64.6	0.9	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|292654537|ref|YP_003534434.1|	-	1.6e-07	31.2	0.0	3.6e-07	30.1	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D4	PF14578.1	gi|292654537|ref|YP_003534434.1|	-	8.4e-06	25.3	0.1	3.2e-05	23.4	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
Miro	PF08477.8	gi|292654537|ref|YP_003534434.1|	-	4e-05	24.0	0.0	0.002	18.6	0.0	2.8	2	1	0	2	2	2	1	Miro-like	protein
Gtr1_RagA	PF04670.7	gi|292654537|ref|YP_003534434.1|	-	0.00029	20.0	0.1	0.025	13.6	0.0	2.3	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
SRPRB	PF09439.5	gi|292654537|ref|YP_003534434.1|	-	0.0052	16.0	0.0	0.18	10.9	0.0	2.4	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.13	gi|292654537|ref|YP_003534434.1|	-	0.019	14.0	0.3	0.04	12.9	0.0	1.6	2	0	0	2	2	2	0	Septin
Dynamin_N	PF00350.18	gi|292654537|ref|YP_003534434.1|	-	0.058	13.2	0.1	3.8	7.3	0.0	2.4	1	1	0	1	1	1	0	Dynamin	family
FeoB_N	PF02421.13	gi|292654537|ref|YP_003534434.1|	-	0.077	12.2	0.3	2	7.6	0.1	2.7	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Ribosomal_S10	PF00338.17	gi|292654538|ref|YP_003534435.1|	-	6.6e-28	96.4	0.0	7.2e-28	96.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
NTR2	PF15458.1	gi|292654540|ref|YP_003534437.1|	-	0.014	14.6	0.7	0.016	14.4	0.5	1.2	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
HTH_AsnC-type	PF13404.1	gi|292654540|ref|YP_003534437.1|	-	0.038	13.5	0.8	0.11	12.0	0.2	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.14	gi|292654540|ref|YP_003534437.1|	-	0.056	13.1	0.0	0.096	12.4	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RelB	PF04221.7	gi|292654540|ref|YP_003534437.1|	-	0.089	12.5	0.1	0.31	10.8	0.1	1.9	1	1	1	2	2	2	0	RelB	antitoxin
VPEP	PF07589.6	gi|292654542|ref|YP_003534439.1|	-	0.08	12.8	0.1	0.13	12.1	0.1	1.3	1	0	0	1	1	1	0	PEP-CTERM	motif
Adeno_E3_CR2	PF02439.10	gi|292654543|ref|YP_003534440.1|	-	1.4	8.5	6.6	0.33	10.5	1.3	2.0	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
UCR_Fe-S_N	PF10399.4	gi|292654544|ref|YP_003534441.1|	-	0.062	12.4	2.0	0.12	11.5	1.4	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|292654544|ref|YP_003534441.1|	-	2.9	8.1	7.1	0.48	10.5	1.9	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PhyH	PF05721.8	gi|292654548|ref|YP_003534445.1|	-	0.004	17.2	0.0	0.0066	16.4	0.0	1.3	1	1	0	1	1	1	1	Phytanoyl-CoA	dioxygenase	(PhyH)
Peptidase_S24	PF00717.18	gi|292654548|ref|YP_003534445.1|	-	0.046	13.3	0.1	0.19	11.4	0.0	1.9	2	0	0	2	2	2	0	Peptidase	S24-like
PcrB	PF01884.12	gi|292654549|ref|YP_003534446.1|	-	0.084	12.1	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	PcrB	family
DUF4366	PF14283.1	gi|292654550|ref|YP_003534447.1|	-	0.057	12.8	0.0	0.058	12.8	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
DUF4536	PF15055.1	gi|292654550|ref|YP_003534447.1|	-	0.25	11.4	0.1	0.25	11.4	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4536)
zf-ribbon_3	PF13248.1	gi|292654552|ref|YP_003534449.1|	-	0.024	13.8	0.8	0.098	11.8	0.6	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654552|ref|YP_003534449.1|	-	0.03	13.6	2.3	0.97	8.8	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|292654552|ref|YP_003534449.1|	-	0.095	12.1	3.0	0.5	9.8	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
AAA_10	PF12846.2	gi|292654554|ref|YP_003534451.1|	-	2.9e-09	36.7	0.0	8.2e-05	22.1	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.1	gi|292654554|ref|YP_003534451.1|	-	1.6e-07	31.5	0.0	2.1e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Zot	PF05707.7	gi|292654554|ref|YP_003534451.1|	-	4.6e-05	22.9	0.5	0.00013	21.4	0.4	1.7	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
DUF2075	PF09848.4	gi|292654554|ref|YP_003534451.1|	-	0.0014	17.6	0.0	0.0021	17.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_29	PF13555.1	gi|292654554|ref|YP_003534451.1|	-	0.012	15.1	0.0	0.022	14.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|292654554|ref|YP_003534451.1|	-	0.016	15.2	0.1	0.026	14.5	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF853	PF05872.7	gi|292654554|ref|YP_003534451.1|	-	0.017	13.5	0.4	1.4	7.2	0.1	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_14	PF13173.1	gi|292654554|ref|YP_003534451.1|	-	0.018	14.9	0.0	0.083	12.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|292654554|ref|YP_003534451.1|	-	0.022	14.4	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_28	PF13521.1	gi|292654554|ref|YP_003534451.1|	-	0.036	14.0	0.5	0.1	12.5	0.3	1.8	1	1	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|292654554|ref|YP_003534451.1|	-	0.039	13.4	0.0	0.053	13.0	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_18	PF13238.1	gi|292654554|ref|YP_003534451.1|	-	0.043	14.1	0.1	0.084	13.1	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|292654554|ref|YP_003534451.1|	-	0.044	13.4	0.0	0.059	13.0	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
TrwB_AAD_bind	PF10412.4	gi|292654554|ref|YP_003534451.1|	-	0.044	12.3	0.0	1.5	7.3	0.1	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|292654554|ref|YP_003534451.1|	-	0.053	12.9	0.1	0.44	9.9	0.1	2.2	1	1	1	2	2	2	0	FtsK/SpoIIIE	family
cobW	PF02492.14	gi|292654554|ref|YP_003534451.1|	-	0.086	12.2	0.1	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|292654554|ref|YP_003534451.1|	-	0.11	13.3	0.1	0.27	12.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|292654554|ref|YP_003534451.1|	-	0.12	11.7	0.7	3.5	6.9	0.5	2.2	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|292654554|ref|YP_003534451.1|	-	0.14	11.3	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Phage_integrase	PF00589.17	gi|292654556|ref|YP_003534453.1|	-	3.4e-16	59.4	0.0	4.2e-16	59.1	0.0	1.0	1	0	0	1	1	1	1	Phage	integrase	family
Integrase_1	PF12835.2	gi|292654556|ref|YP_003534453.1|	-	1.9e-07	31.0	0.0	2.7e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Integrase
DUF3905	PF13045.1	gi|292654556|ref|YP_003534453.1|	-	0.11	12.3	0.1	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3905)
RHH_1	PF01402.16	gi|292654558|ref|YP_003534455.1|	-	3.4e-07	29.8	0.0	4.5e-07	29.4	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|292654558|ref|YP_003534455.1|	-	0.00046	19.7	0.0	0.00058	19.4	0.0	1.2	1	0	0	1	1	1	1	Arc-like	DNA	binding	domain
DUF4047	PF13256.1	gi|292654559|ref|YP_003534456.1|	-	0.13	12.2	0.1	0.15	12.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4047)
Sigma70_r4_2	PF08281.7	gi|292654560|ref|YP_003534457.1|	-	9.5e-08	31.3	0.0	1.1e-07	31.2	0.0	1.1	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|292654560|ref|YP_003534457.1|	-	0.00041	19.9	0.0	0.0005	19.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.1	gi|292654560|ref|YP_003534457.1|	-	0.0024	17.4	0.0	0.0034	16.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|292654560|ref|YP_003534457.1|	-	0.011	15.7	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|292654560|ref|YP_003534457.1|	-	0.015	15.4	0.0	0.018	15.1	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn	helix
PHBC_N	PF12551.3	gi|292654560|ref|YP_003534457.1|	-	0.021	14.3	0.1	0.034	13.6	0.0	1.4	1	0	0	1	1	1	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
TrmB	PF01978.14	gi|292654560|ref|YP_003534457.1|	-	0.022	14.4	0.0	0.029	14.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292654560|ref|YP_003534457.1|	-	0.022	14.3	0.0	0.034	13.7	0.0	1.4	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292654560|ref|YP_003534457.1|	-	0.024	14.3	0.0	0.035	13.7	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
Herpes_US9	PF06072.6	gi|292654560|ref|YP_003534457.1|	-	0.049	13.4	0.0	0.073	12.9	0.0	1.3	1	0	0	1	1	1	0	Alphaherpesvirus	tegument	protein	US9
DUF4129	PF13559.1	gi|292654560|ref|YP_003534457.1|	-	0.23	11.4	1.7	0.39	10.7	1.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4129)
Phage_integrase	PF00589.17	gi|292654562|ref|YP_003534459.1|	-	1.4e-10	41.1	0.0	9.6e-10	38.3	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|292654562|ref|YP_003534459.1|	-	1.1e-05	25.4	1.0	3.4e-05	23.9	0.0	2.3	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|292654562|ref|YP_003534459.1|	-	0.086	13.1	0.0	0.34	11.2	0.0	1.9	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
SseB_C	PF14581.1	gi|292654563|ref|YP_003534460.1|	-	0.16	11.8	0.0	0.19	11.5	0.0	1.1	1	0	0	1	1	1	0	SseB	protein	C-terminal	domain
Prok-RING_1	PF14446.1	gi|292654564|ref|YP_003534461.1|	-	0.0057	16.3	0.9	0.0094	15.6	0.6	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
Pentaxin	PF00354.12	gi|292654564|ref|YP_003534461.1|	-	0.035	13.5	0.0	0.037	13.4	0.0	1.1	1	0	0	1	1	1	0	Pentaxin	family
RNB	PF00773.14	gi|292654565|ref|YP_003534462.1|	-	2e-79	267.2	0.2	3.5e-77	259.8	0.1	2.2	1	1	0	1	1	1	1	RNB	domain
DUF982	PF06169.7	gi|292654565|ref|YP_003534462.1|	-	0.0064	16.2	0.0	0.015	15.0	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF982)
TraD	PF06412.6	gi|292654566|ref|YP_003534463.1|	-	0.075	12.6	0.2	11	5.7	0.0	2.3	2	0	0	2	2	2	0	Conjugal	transfer	protein	TraD
zf-C4pol	PF14260.1	gi|292654566|ref|YP_003534463.1|	-	0.093	12.7	0.5	0.12	12.3	0.3	1.2	1	0	0	1	1	1	0	C4-type	zinc-finger	of	DNA	polymerase	delta
GATA	PF00320.22	gi|292654566|ref|YP_003534463.1|	-	2.3	7.6	6.9	2.7	7.4	0.4	2.4	2	0	0	2	2	2	0	GATA	zinc	finger
PUA	PF01472.15	gi|292654567|ref|YP_003534464.1|	-	1.9e-17	62.7	3.4	3.6e-17	61.8	2.4	1.5	1	0	0	1	1	1	1	PUA	domain
DUF1028	PF06267.7	gi|292654568|ref|YP_003534465.1|	-	3.6e-48	163.5	0.2	4.1e-48	163.3	0.2	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
DUF552	PF04472.7	gi|292654569|ref|YP_003534466.1|	-	1.5e-17	63.2	1.5	1.9e-17	62.8	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF552)
DUF2088	PF09861.4	gi|292654569|ref|YP_003534466.1|	-	0.048	12.6	0.1	0.06	12.3	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2088)
ACCA	PF03255.9	gi|292654569|ref|YP_003534466.1|	-	1.1	8.8	3.9	6	6.4	0.3	2.0	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
ABC_tran	PF00005.22	gi|292654570|ref|YP_003534467.1|	-	7.2e-19	68.4	0.0	1e-09	38.8	0.0	4.0	3	1	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.14	gi|292654570|ref|YP_003534467.1|	-	5.5e-12	45.3	0.0	0.005	16.0	0.0	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292654570|ref|YP_003534467.1|	-	7.1e-09	35.0	0.0	0.0015	18.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
DnaJ_CXXCXGXG	PF00684.14	gi|292654570|ref|YP_003534467.1|	-	2.1e-07	30.8	3.9	0.001	19.0	0.6	3.3	3	0	0	3	3	3	1	DnaJ	central	domain
AAA_21	PF13304.1	gi|292654570|ref|YP_003534467.1|	-	1.5e-06	28.3	3.8	0.38	10.6	0.0	4.4	4	0	0	4	4	4	1	AAA	domain
AAA_25	PF13481.1	gi|292654570|ref|YP_003534467.1|	-	1.7e-06	27.5	0.1	0.042	13.2	0.0	3.9	5	0	0	5	5	5	2	AAA	domain
AAA_22	PF13401.1	gi|292654570|ref|YP_003534467.1|	-	2e-06	27.9	0.4	0.085	13.0	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
AAA_10	PF12846.2	gi|292654570|ref|YP_003534467.1|	-	2e-06	27.4	1.9	0.003	17.0	0.0	3.2	2	1	0	2	2	2	2	AAA-like	domain
AAA_16	PF13191.1	gi|292654570|ref|YP_003534467.1|	-	1.3e-05	25.2	0.0	0.074	13.0	0.0	2.9	2	0	0	2	2	2	2	AAA	ATPase	domain
KaiC	PF06745.8	gi|292654570|ref|YP_003534467.1|	-	0.00024	20.2	0.0	0.077	12.0	0.0	2.5	2	0	0	2	2	2	1	KaiC
AAA_17	PF13207.1	gi|292654570|ref|YP_003534467.1|	-	0.00025	21.8	6.1	0.28	11.9	0.0	4.6	5	0	0	5	5	4	1	AAA	domain
DUF258	PF03193.11	gi|292654570|ref|YP_003534467.1|	-	0.00029	20.0	0.0	0.84	8.8	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|292654570|ref|YP_003534467.1|	-	0.00043	20.5	0.1	0.53	10.5	0.0	3.5	3	0	0	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|292654570|ref|YP_003534467.1|	-	0.00046	20.0	0.0	0.61	9.9	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|292654570|ref|YP_003534467.1|	-	0.00089	19.1	0.0	0.95	9.3	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|292654570|ref|YP_003534467.1|	-	0.002	17.7	0.7	0.0088	15.7	0.2	2.3	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
Viral_helicase1	PF01443.13	gi|292654570|ref|YP_003534467.1|	-	0.0045	16.5	0.0	0.12	11.8	0.0	2.3	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
APS_kinase	PF01583.15	gi|292654570|ref|YP_003534467.1|	-	0.005	16.5	0.2	4.8	6.8	0.0	3.2	3	0	0	3	3	3	0	Adenylylsulphate	kinase
RNA12	PF10443.4	gi|292654570|ref|YP_003534467.1|	-	0.0066	14.9	0.0	0.35	9.3	0.0	2.1	2	0	0	2	2	2	1	RNA12	protein
RNA_helicase	PF00910.17	gi|292654570|ref|YP_003534467.1|	-	0.0079	16.3	0.0	0.22	11.7	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
DUF2075	PF09848.4	gi|292654570|ref|YP_003534467.1|	-	0.0081	15.1	0.0	1.6	7.6	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
Arch_ATPase	PF01637.13	gi|292654570|ref|YP_003534467.1|	-	0.0083	15.8	0.0	1.9	8.1	0.0	2.6	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_23	PF13476.1	gi|292654570|ref|YP_003534467.1|	-	0.0085	16.4	0.6	3.1	8.0	0.1	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|292654570|ref|YP_003534467.1|	-	0.011	14.7	0.0	0.73	8.8	0.0	2.8	4	0	0	4	4	4	0	AAA	ATPase	domain
NACHT	PF05729.7	gi|292654570|ref|YP_003534467.1|	-	0.011	15.3	0.0	0.33	10.5	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.14	gi|292654570|ref|YP_003534467.1|	-	0.022	14.2	0.3	0.92	8.9	0.0	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|292654570|ref|YP_003534467.1|	-	0.028	14.1	0.1	0.76	9.4	0.0	2.6	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|292654570|ref|YP_003534467.1|	-	0.044	13.7	0.2	2.9	7.8	0.0	3.3	4	0	0	4	4	4	0	50S	ribosome-binding	GTPase
AAA_19	PF13245.1	gi|292654570|ref|YP_003534467.1|	-	0.052	13.2	0.1	10	5.9	0.0	2.9	2	0	0	2	2	2	0	Part	of	AAA	domain
PRK	PF00485.13	gi|292654570|ref|YP_003534467.1|	-	0.11	12.1	0.1	2.2	7.7	0.0	2.4	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF3987	PF13148.1	gi|292654570|ref|YP_003534467.1|	-	0.25	9.8	0.0	17	3.8	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3987)
zf-RING_3	PF14369.1	gi|292654570|ref|YP_003534467.1|	-	0.73	9.8	3.4	4.1	7.4	0.1	2.8	3	0	0	3	3	2	0	zinc-finger
PADR1	PF08063.7	gi|292654570|ref|YP_003534467.1|	-	8.1	5.9	7.4	15	5.0	0.0	3.9	5	0	0	5	5	5	0	PADR1	(NUC008)	domain
BNR	PF02012.15	gi|292654572|ref|YP_003534469.1|	-	1.5e-10	39.2	22.1	0.1	12.5	0.1	6.3	6	0	0	6	6	6	5	BNR/Asp-box	repeat
PSII_BNR	PF14870.1	gi|292654572|ref|YP_003534469.1|	-	1.4e-06	27.4	4.7	0.046	12.7	0.0	3.9	2	1	2	4	4	4	3	Photosynthesis	system	II	assembly	factor	YCF48
BNR_2	PF13088.1	gi|292654572|ref|YP_003534469.1|	-	0.0011	18.3	7.1	0.031	13.5	0.1	4.1	1	1	2	3	3	3	2	BNR	repeat-like	domain
DUF4185	PF13810.1	gi|292654572|ref|YP_003534469.1|	-	0.088	11.6	6.2	16	4.2	0.0	4.4	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF4185)
FAD_binding_3	PF01494.14	gi|292654573|ref|YP_003534470.1|	-	1.3e-13	50.7	3.4	3.6e-10	39.4	1.1	3.0	2	1	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.19	gi|292654573|ref|YP_003534470.1|	-	5.2e-10	38.7	0.3	0.00022	20.2	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|292654573|ref|YP_003534470.1|	-	5.2e-07	29.0	0.3	7.2e-07	28.6	0.2	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292654573|ref|YP_003534470.1|	-	3.5e-06	27.0	0.0	1.4e-05	25.0	0.0	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292654573|ref|YP_003534470.1|	-	3.2e-05	23.0	1.2	0.02	13.8	0.0	2.3	2	1	0	2	2	2	2	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.1	gi|292654573|ref|YP_003534470.1|	-	6.2e-05	23.1	0.0	0.00013	22.1	0.0	1.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292654573|ref|YP_003534470.1|	-	0.0049	15.4	0.2	0.016	13.7	0.0	1.7	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|292654573|ref|YP_003534470.1|	-	0.005	16.8	0.3	0.023	14.7	0.2	2.2	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|292654573|ref|YP_003534470.1|	-	0.0068	15.2	2.7	0.0084	14.9	0.4	1.9	1	1	0	2	2	2	1	FAD	binding	domain
SE	PF08491.5	gi|292654573|ref|YP_003534470.1|	-	0.037	12.8	0.0	0.55	9.0	0.0	2.1	2	0	0	2	2	2	0	Squalene	epoxidase
GCV_T	PF01571.16	gi|292654574|ref|YP_003534471.1|	-	3e-36	124.7	0.0	4.1e-36	124.3	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|292654574|ref|YP_003534471.1|	-	1.5e-16	60.1	0.0	4.2e-16	58.7	0.0	1.8	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
HTH_20	PF12840.2	gi|292654575|ref|YP_003534472.1|	-	0.0032	17.2	0.2	0.0054	16.5	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|292654575|ref|YP_003534472.1|	-	0.0081	15.5	0.1	0.014	14.7	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
RPA_C	PF08784.6	gi|292654575|ref|YP_003534472.1|	-	0.038	14.3	0.0	0.052	13.9	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
TrmB	PF01978.14	gi|292654575|ref|YP_003534472.1|	-	0.097	12.3	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TPM	PF04536.9	gi|292654575|ref|YP_003534472.1|	-	0.11	12.3	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	TLP18.3,	Psb32	and	MOLO-1	founding	proteins	of	phosphatase
Sigma70_r1_1	PF03979.9	gi|292654575|ref|YP_003534472.1|	-	0.3	11.0	2.6	0.39	10.6	1.7	1.4	1	1	0	1	1	1	0	Sigma-70	factor,	region	1.1
zf-ribbon_3	PF13248.1	gi|292654576|ref|YP_003534473.1|	-	0.0022	17.1	4.6	0.18	11.0	0.1	3.4	3	0	0	3	3	3	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292654576|ref|YP_003534473.1|	-	0.013	15.4	4.6	0.27	11.2	1.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1610	PF07754.6	gi|292654576|ref|YP_003534473.1|	-	0.013	15.6	0.7	0.013	15.6	0.5	3.8	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.1	gi|292654576|ref|YP_003534473.1|	-	0.015	14.7	7.2	0.62	9.6	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292654576|ref|YP_003534473.1|	-	0.039	13.7	4.2	0.84	9.5	1.4	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-RING_3	PF14369.1	gi|292654576|ref|YP_003534473.1|	-	0.078	12.9	5.7	1.9	8.5	1.1	3.4	2	1	1	3	3	3	0	zinc-finger
DUF2296	PF10058.4	gi|292654576|ref|YP_003534473.1|	-	0.12	12.1	2.2	1.4	8.7	0.0	3.1	3	0	0	3	3	3	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-CHY	PF05495.7	gi|292654576|ref|YP_003534473.1|	-	0.13	12.4	1.2	7.3	6.8	0.1	2.2	2	0	0	2	2	2	0	CHY	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|292654576|ref|YP_003534473.1|	-	0.19	11.0	8.0	3.3	7.0	0.3	3.3	2	1	1	3	3	3	0	TFIIB	zinc-binding
Zn_Tnp_IS91	PF14319.1	gi|292654576|ref|YP_003534473.1|	-	0.22	11.0	2.5	1.1	8.8	0.3	2.1	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
zinc_ribbon_4	PF13717.1	gi|292654576|ref|YP_003534473.1|	-	0.26	11.0	4.1	35	4.1	0.0	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292654576|ref|YP_003534473.1|	-	0.35	10.4	3.9	37	4.0	0.0	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654576|ref|YP_003534473.1|	-	0.43	10.2	2.4	15	5.3	0.3	2.4	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|292654576|ref|YP_003534473.1|	-	0.58	9.8	12.8	1.8	8.3	0.1	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-TFIIB	PF13453.1	gi|292654576|ref|YP_003534473.1|	-	0.65	9.2	6.1	4.3	6.6	1.8	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-NADH-PPase	PF09297.6	gi|292654576|ref|YP_003534473.1|	-	0.68	9.5	7.5	2.1	7.9	0.0	3.1	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|292654576|ref|YP_003534473.1|	-	0.77	9.2	6.6	2.2	7.8	0.1	3.1	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Herpes_TAF50	PF03326.8	gi|292654576|ref|YP_003534473.1|	-	0.93	8.3	11.2	1.3	7.9	7.8	1.1	1	0	0	1	1	1	0	Herpesvirus	transcription	activation	factor	(transactivator)
zf-ISL3	PF14690.1	gi|292654576|ref|YP_003534473.1|	-	1.1	9.3	4.4	17	5.5	0.1	3.0	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-CCHC_5	PF14787.1	gi|292654576|ref|YP_003534473.1|	-	2.5	7.6	6.2	2.5	7.6	0.3	2.8	3	0	0	3	3	3	0	GAG-polyprotein	viral	zinc-finger
Zn_Tnp_IS1595	PF12760.2	gi|292654576|ref|YP_003534473.1|	-	2.8	7.8	8.6	22	4.9	0.0	3.1	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|292654576|ref|YP_003534473.1|	-	4.8	6.9	6.2	73	3.1	0.0	3.0	2	1	1	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
PhnA_Zn_Ribbon	PF08274.7	gi|292654576|ref|YP_003534473.1|	-	8	6.3	10.7	14	5.5	0.2	3.2	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
Entericidin	PF08085.6	gi|292654577|ref|YP_003534474.1|	-	0.093	12.5	0.3	0.31	10.8	0.2	2.0	1	0	0	1	1	1	0	Entericidin	EcnA/B	family
Usp	PF00582.21	gi|292654578|ref|YP_003534475.1|	-	5.7e-20	71.9	1.9	6.5e-20	71.7	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AIM24	PF01987.12	gi|292654579|ref|YP_003534476.1|	-	1.7e-68	230.2	0.2	2e-68	230.1	0.1	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
ROK	PF00480.15	gi|292654580|ref|YP_003534477.1|	-	6.1e-31	107.6	0.2	8.2e-31	107.2	0.2	1.2	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.15	gi|292654580|ref|YP_003534477.1|	-	1.3e-07	31.1	0.1	3.3e-07	29.8	0.0	1.7	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.16	gi|292654580|ref|YP_003534477.1|	-	0.003	16.9	0.1	0.0097	15.2	0.0	1.8	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
LVIVD	PF08309.6	gi|292654582|ref|YP_003534479.1|	-	2.7e-11	42.2	5.6	0.0003	19.6	0.0	6.2	7	0	0	7	7	7	3	LVIVD	repeat
NifU	PF01106.12	gi|292654582|ref|YP_003534479.1|	-	3.1e-08	33.2	0.3	8.2e-08	31.9	0.2	1.7	1	0	0	1	1	1	1	NifU-like	domain
Beta_propel	PF09826.4	gi|292654582|ref|YP_003534479.1|	-	0.027	12.8	0.0	7.6	4.7	0.0	3.4	3	1	0	3	3	3	0	Beta	propeller	domain
TAT_signal	PF10518.4	gi|292654582|ref|YP_003534479.1|	-	6.7	7.0	14.9	0.094	12.7	1.4	2.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF402	PF04167.8	gi|292654583|ref|YP_003534480.1|	-	2.4e-22	78.5	0.7	4.9e-22	77.5	0.5	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.18	gi|292654583|ref|YP_003534480.1|	-	0.00047	20.2	0.2	0.0017	18.4	0.1	1.9	1	0	0	1	1	1	1	S1	RNA	binding	domain
E2R135	PF11570.3	gi|292654583|ref|YP_003534480.1|	-	0.035	14.2	0.1	2.1	8.4	0.0	2.5	2	0	0	2	2	2	0	Coiled-coil	receptor-binding	R-domain	of	colicin	E2
DUF1906	PF08924.6	gi|292654584|ref|YP_003534481.1|	-	0.044	13.6	0.1	0.055	13.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1906)
PrsW-protease	PF13367.1	gi|292654585|ref|YP_003534482.1|	-	1.8e-41	141.4	17.5	3.5e-41	140.4	12.2	1.5	1	0	0	1	1	1	1	Protease	prsW	family
Rab5ip	PF07019.7	gi|292654585|ref|YP_003534482.1|	-	0.03	14.4	1.1	0.03	14.4	0.8	2.8	2	1	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
Lum_binding	PF00677.12	gi|292654586|ref|YP_003534483.1|	-	1.8e-35	120.7	0.0	5.1e-17	61.5	0.0	2.0	2	0	0	2	2	2	2	Lumazine	binding	domain
Na_sulph_symp	PF00939.14	gi|292654588|ref|YP_003534485.1|	-	8.6e-11	41.3	14.2	8.6e-11	41.3	9.8	1.8	1	1	1	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.11	gi|292654588|ref|YP_003534485.1|	-	1.8e-07	30.0	19.2	1.8e-07	30.0	13.3	1.7	2	0	0	2	2	2	1	Citrate	transporter
TrkA_C	PF02080.16	gi|292654589|ref|YP_003534486.1|	-	5.6e-18	64.3	3.3	9.6e-10	37.9	0.2	2.4	2	0	0	2	2	2	2	TrkA-C	domain
CitMHS	PF03600.11	gi|292654589|ref|YP_003534486.1|	-	4.7e-16	58.3	12.2	6.1e-16	57.9	8.5	1.1	1	0	0	1	1	1	1	Citrate	transporter
Na_sulph_symp	PF00939.14	gi|292654589|ref|YP_003534486.1|	-	1.5e-06	27.3	11.1	4.2e-05	22.6	2.4	2.0	1	1	1	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
CDP-OH_P_tran_2	PF08009.6	gi|292654589|ref|YP_003534486.1|	-	0.59	9.9	10.6	0.92	9.2	0.4	2.7	2	0	0	2	2	2	0	CDP-alcohol	phosphatidyltransferase	2
PqiA	PF04403.8	gi|292654589|ref|YP_003534486.1|	-	3.1	7.3	8.4	0.83	9.2	2.5	2.3	2	1	1	3	3	3	0	Paraquat-inducible	protein	A
Peptidase_M24	PF00557.19	gi|292654591|ref|YP_003534488.1|	-	8.8e-10	38.4	1.4	1.3e-09	37.9	0.5	1.6	1	1	1	2	2	2	1	Metallopeptidase	family	M24
DUF4232	PF14016.1	gi|292654591|ref|YP_003534488.1|	-	0.35	10.5	7.6	0.069	12.8	0.8	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4232)
UvrD-helicase	PF00580.16	gi|292654592|ref|YP_003534489.1|	-	2.4e-25	89.4	0.0	1.4e-11	44.2	0.0	2.3	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|292654592|ref|YP_003534489.1|	-	1e-12	48.2	0.0	3.7e-08	33.2	0.0	2.4	1	1	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|292654592|ref|YP_003534489.1|	-	1.6e-09	37.3	0.1	3.9e-09	36.1	0.1	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
UvrD_C_2	PF13538.1	gi|292654592|ref|YP_003534489.1|	-	3.6e-07	30.2	1.0	9.1e-06	25.7	0.2	3.0	2	1	0	2	2	2	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.13	gi|292654592|ref|YP_003534489.1|	-	0.00015	21.4	0.0	2.3	7.6	0.0	3.9	3	1	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
Herpes_ori_bp	PF02399.10	gi|292654592|ref|YP_003534489.1|	-	0.0017	16.4	0.0	0.0025	15.8	0.0	1.2	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_30	PF13604.1	gi|292654592|ref|YP_003534489.1|	-	0.0033	17.0	0.1	0.058	12.9	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.1	gi|292654592|ref|YP_003534489.1|	-	0.0034	17.5	0.0	1.4	9.0	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
AAA_11	PF13086.1	gi|292654592|ref|YP_003534489.1|	-	0.0037	16.8	0.0	0.015	14.8	0.0	2.0	3	0	0	3	3	3	1	AAA	domain
DEAD	PF00270.24	gi|292654592|ref|YP_003534489.1|	-	0.0084	15.6	0.0	1.6	8.1	0.0	2.5	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_25	PF13481.1	gi|292654592|ref|YP_003534489.1|	-	0.022	14.1	0.3	0.62	9.4	0.0	3.1	3	0	0	3	3	3	0	AAA	domain
AAA_12	PF13087.1	gi|292654592|ref|YP_003534489.1|	-	0.052	12.9	0.1	0.14	11.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
zinc_ribbon_2	PF13240.1	gi|292654593|ref|YP_003534490.1|	-	0.00022	20.5	1.1	0.0003	20.1	0.8	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|292654593|ref|YP_003534490.1|	-	0.00062	18.8	1.9	0.00098	18.2	1.3	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|292654593|ref|YP_003534490.1|	-	0.0014	18.3	0.7	0.0017	18.1	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|292654593|ref|YP_003534490.1|	-	0.011	15.1	0.5	0.37	10.2	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292654593|ref|YP_003534490.1|	-	0.046	13.2	0.9	0.046	13.2	0.6	2.7	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|292654593|ref|YP_003534490.1|	-	0.047	13.5	3.5	1.9	8.4	0.3	2.3	2	1	0	2	2	2	0	Rubredoxin
TF_Zn_Ribbon	PF08271.7	gi|292654593|ref|YP_003534490.1|	-	0.1	11.9	3.4	1	8.7	0.1	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|292654593|ref|YP_003534490.1|	-	0.15	11.7	2.1	2.7	7.7	0.1	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Cys_rich_CPCC	PF14206.1	gi|292654593|ref|YP_003534490.1|	-	0.23	11.0	1.4	0.36	10.4	1.0	1.4	1	0	0	1	1	1	0	Cysteine-rich	CPCC
UPF0547	PF10571.4	gi|292654593|ref|YP_003534490.1|	-	0.25	11.0	3.3	0.78	9.4	2.3	1.7	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|292654593|ref|YP_003534490.1|	-	0.52	10.0	3.0	3.8	7.2	0.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292654593|ref|YP_003534490.1|	-	0.58	9.7	3.2	3.2	7.4	0.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|292654593|ref|YP_003534490.1|	-	0.65	10.1	3.7	2.1	8.5	0.0	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zf-IS66	PF13005.2	gi|292654593|ref|YP_003534490.1|	-	1.4	8.9	5.0	5.7	7.0	3.5	1.9	1	1	0	1	1	1	0	zinc-finger	binding	domain	of	transposase	IS66
zf-Mss51	PF13824.1	gi|292654593|ref|YP_003534490.1|	-	1.8	8.4	4.4	2	8.3	0.2	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Peptidase_M32	PF02074.10	gi|292654594|ref|YP_003534491.1|	-	7.6e-159	529.4	1.6	8.7e-159	529.2	1.1	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
HNH_2	PF13391.1	gi|292654595|ref|YP_003534492.1|	-	2.5e-09	36.7	0.1	5.3e-09	35.7	0.1	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.18	gi|292654595|ref|YP_003534492.1|	-	4.8e-07	29.5	1.1	1.1e-06	28.4	0.8	1.6	1	0	0	1	1	1	1	HNH	endonuclease
DUF968	PF06147.6	gi|292654595|ref|YP_003534492.1|	-	0.00033	20.6	0.1	0.00061	19.7	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF968)
Peptidase_M20	PF01546.23	gi|292654596|ref|YP_003534493.1|	-	7.1e-30	103.9	1.3	8.8e-30	103.6	0.9	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292654596|ref|YP_003534493.1|	-	1.4e-12	47.3	0.1	4.2e-12	45.7	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
SMP	PF04927.7	gi|292654596|ref|YP_003534493.1|	-	0.91	9.5	7.1	30	4.6	0.0	3.7	3	0	0	3	3	3	0	Seed	maturation	protein
MCPsignal	PF00015.16	gi|292654597|ref|YP_003534494.1|	-	7.6e-47	159.5	49.7	1.1e-44	152.6	20.9	2.8	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|292654597|ref|YP_003534494.1|	-	1.6e-09	37.8	0.1	1.6e-09	37.8	0.0	6.6	6	1	0	6	6	6	1	HAMP	domain
DUF948	PF06103.6	gi|292654597|ref|YP_003534494.1|	-	0.00085	19.1	20.6	0.089	12.6	0.9	5.4	3	2	2	5	5	5	2	Bacterial	protein	of	unknown	function	(DUF948)
BLOC1_2	PF10046.4	gi|292654597|ref|YP_003534494.1|	-	0.0039	17.2	18.3	0.69	10.0	0.3	5.3	2	2	3	5	5	5	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
V_ATPase_I	PF01496.14	gi|292654597|ref|YP_003534494.1|	-	0.017	13.0	10.6	0.029	12.2	7.2	1.4	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF4559	PF15112.1	gi|292654597|ref|YP_003534494.1|	-	0.028	13.5	7.3	0.4	9.8	0.5	2.4	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4559)
Spc7	PF08317.6	gi|292654597|ref|YP_003534494.1|	-	0.034	12.7	10.6	0.066	11.8	0.9	2.7	2	0	0	2	2	2	0	Spc7	kinetochore	protein
IFT57	PF10498.4	gi|292654597|ref|YP_003534494.1|	-	0.046	12.4	8.9	0.11	11.2	0.3	3.1	3	1	0	3	3	3	0	Intra-flagellar	transport	protein	57
DUF489	PF04356.7	gi|292654597|ref|YP_003534494.1|	-	0.081	12.5	4.6	0.68	9.4	0.6	3.1	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF489)
DUF4298	PF14131.1	gi|292654597|ref|YP_003534494.1|	-	0.1	12.4	2.9	52	3.8	0.0	4.6	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF4298)
AAA_13	PF13166.1	gi|292654597|ref|YP_003534494.1|	-	0.13	10.7	15.4	0.048	12.1	2.6	2.1	1	1	1	2	2	2	0	AAA	domain
NPV_P10	PF05531.7	gi|292654597|ref|YP_003534494.1|	-	0.14	12.4	21.5	5.2	7.3	0.4	6.4	4	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.7	gi|292654597|ref|YP_003534494.1|	-	0.14	11.9	20.5	0.47	10.2	0.9	4.6	3	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Muted	PF14942.1	gi|292654597|ref|YP_003534494.1|	-	0.16	11.8	14.5	0.037	13.8	1.5	2.8	3	1	0	3	3	2	0	Organelle	biogenesis,	Muted-like	protein
Reo_sigmaC	PF04582.7	gi|292654597|ref|YP_003534494.1|	-	0.24	10.5	28.5	0.28	10.3	5.8	3.5	3	1	2	5	5	5	0	Reovirus	sigma	C	capsid	protein
MutS_III	PF05192.13	gi|292654597|ref|YP_003534494.1|	-	0.25	11.1	11.1	1.1	9.0	2.4	3.2	1	1	1	2	2	2	0	MutS	domain	III
LOH1CR12	PF10158.4	gi|292654597|ref|YP_003534494.1|	-	0.29	10.9	5.8	8.9	6.1	0.1	3.8	2	2	1	3	3	3	0	Tumour	suppressor	protein
Spectrin	PF00435.16	gi|292654597|ref|YP_003534494.1|	-	0.31	11.3	13.9	2.5	8.4	0.7	4.2	2	1	1	4	4	4	0	Spectrin	repeat
TPR_MLP1_2	PF07926.7	gi|292654597|ref|YP_003534494.1|	-	0.48	10.1	21.1	2.6	7.8	0.2	4.6	3	1	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
Mating_N	PF12731.2	gi|292654597|ref|YP_003534494.1|	-	0.55	10.1	13.8	0.49	10.3	0.2	4.1	4	1	0	4	4	4	0	Mating-type	protein	beta	1
PLU-1	PF08429.6	gi|292654597|ref|YP_003534494.1|	-	0.57	9.0	11.6	19	3.9	8.1	2.7	1	1	0	1	1	1	0	PLU-1-like	protein
Seryl_tRNA_N	PF02403.17	gi|292654597|ref|YP_003534494.1|	-	0.83	9.6	14.8	3	7.9	0.1	4.5	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
Allexi_40kDa	PF05549.6	gi|292654597|ref|YP_003534494.1|	-	0.86	8.8	9.4	0.67	9.1	0.5	2.8	1	1	2	3	3	3	0	Allexivirus	40kDa	protein
Syntaxin-6_N	PF09177.6	gi|292654597|ref|YP_003534494.1|	-	0.95	9.9	22.3	0.12	12.8	0.5	4.9	2	2	3	5	5	5	0	Syntaxin	6,	N-terminal
Prominin	PF05478.6	gi|292654597|ref|YP_003534494.1|	-	1.1	6.7	10.0	0.58	7.6	3.8	2.2	1	1	1	2	2	2	0	Prominin
APG17	PF04108.7	gi|292654597|ref|YP_003534494.1|	-	1.3	7.7	10.0	7.1	5.3	0.6	3.3	2	1	1	3	3	3	0	Autophagy	protein	Apg17
DUF1664	PF07889.7	gi|292654597|ref|YP_003534494.1|	-	1.8	8.3	18.8	9	6.1	0.0	5.3	3	2	4	7	7	7	0	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.7	gi|292654597|ref|YP_003534494.1|	-	1.9	8.2	25.8	3.1	7.5	0.2	4.8	3	2	3	6	6	5	0	Laminin	Domain	II
ADIP	PF11559.3	gi|292654597|ref|YP_003534494.1|	-	2.3	8.1	9.3	0.67	9.8	0.2	3.2	2	2	2	4	4	4	0	Afadin-	and	alpha	-actinin-Binding
ING	PF12998.2	gi|292654597|ref|YP_003534494.1|	-	2.6	8.3	7.6	44	4.4	0.0	3.9	3	2	1	4	4	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Transpep_BrtH	PF14399.1	gi|292654597|ref|YP_003534494.1|	-	4.4	6.5	15.7	4.6	6.4	4.1	3.5	1	1	3	4	4	4	0	NlpC/p60-like	transpeptidase
Ferritin	PF00210.19	gi|292654597|ref|YP_003534494.1|	-	4.6	6.9	13.7	0.41	10.4	1.0	3.8	2	2	1	3	3	3	0	Ferritin-like	domain
Cytochrom_B562	PF07361.6	gi|292654597|ref|YP_003534494.1|	-	6.1	7.3	15.5	7.2	7.0	0.0	5.0	4	1	1	5	5	5	0	Cytochrome	b562
T2SE	PF00437.15	gi|292654598|ref|YP_003534495.1|	-	1.7e-14	53.3	0.0	3e-14	52.5	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.24	gi|292654598|ref|YP_003534495.1|	-	9.4e-07	28.3	0.1	2.9e-06	26.8	0.1	1.9	1	0	0	1	1	1	1	KH	domain
AAA_17	PF13207.1	gi|292654598|ref|YP_003534495.1|	-	0.0001	23.1	0.0	0.00049	20.9	0.0	2.2	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292654598|ref|YP_003534495.1|	-	0.00027	20.1	0.0	0.00054	19.1	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_33	PF13671.1	gi|292654598|ref|YP_003534495.1|	-	0.0016	18.3	0.0	0.0088	15.9	0.0	2.3	2	0	0	2	2	1	1	AAA	domain
KH_2	PF07650.12	gi|292654598|ref|YP_003534495.1|	-	0.0023	17.4	0.7	0.0069	15.9	0.5	1.8	1	0	0	1	1	1	1	KH	domain
Thymidylate_kin	PF02223.12	gi|292654598|ref|YP_003534495.1|	-	0.0024	17.3	0.0	0.0081	15.5	0.0	1.8	1	1	1	2	2	2	1	Thymidylate	kinase
AAA_30	PF13604.1	gi|292654598|ref|YP_003534495.1|	-	0.0032	17.0	0.0	0.0071	15.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|292654598|ref|YP_003534495.1|	-	0.0034	17.1	0.0	0.0086	15.8	0.0	1.7	1	0	0	1	1	1	1	NTPase
KH_3	PF13014.1	gi|292654598|ref|YP_003534495.1|	-	0.0038	16.8	0.2	0.013	15.1	0.1	2.0	1	0	0	1	1	1	1	KH	domain
AAA_19	PF13245.1	gi|292654598|ref|YP_003534495.1|	-	0.0039	16.9	0.0	0.0098	15.6	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_29	PF13555.1	gi|292654598|ref|YP_003534495.1|	-	0.0048	16.3	0.0	0.014	14.9	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|292654598|ref|YP_003534495.1|	-	0.0075	16.2	0.0	0.022	14.7	0.0	1.8	1	0	0	1	1	1	1	AAA	ATPase	domain
KaiC	PF06745.8	gi|292654598|ref|YP_003534495.1|	-	0.0093	15.1	0.1	0.14	11.2	0.0	2.8	4	0	0	4	4	4	1	KaiC
AAA_18	PF13238.1	gi|292654598|ref|YP_003534495.1|	-	0.01	16.1	0.3	0.029	14.6	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
AAA_5	PF07728.9	gi|292654598|ref|YP_003534495.1|	-	0.017	14.8	0.0	0.036	13.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|292654598|ref|YP_003534495.1|	-	0.019	14.3	0.1	0.056	12.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
PIN_4	PF13638.1	gi|292654598|ref|YP_003534495.1|	-	0.02	14.9	0.0	0.22	11.6	0.0	2.4	1	1	0	1	1	1	0	PIN	domain
KTI12	PF08433.5	gi|292654598|ref|YP_003534495.1|	-	0.021	14.0	0.1	0.055	12.6	0.0	1.6	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
ATP_bind_1	PF03029.12	gi|292654598|ref|YP_003534495.1|	-	0.022	14.2	0.0	0.036	13.5	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
FtsK_SpoIIIE	PF01580.13	gi|292654598|ref|YP_003534495.1|	-	0.025	14.0	0.0	0.074	12.5	0.0	1.7	2	0	0	2	2	1	0	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|292654598|ref|YP_003534495.1|	-	0.032	14.3	0.0	0.07	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|292654598|ref|YP_003534495.1|	-	0.034	14.3	0.0	0.071	13.3	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
KH_5	PF13184.1	gi|292654598|ref|YP_003534495.1|	-	0.044	13.5	0.7	0.13	12.0	0.1	2.1	2	0	0	2	2	1	0	NusA-like	KH	domain
IstB_IS21	PF01695.12	gi|292654598|ref|YP_003534495.1|	-	0.056	12.8	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|292654598|ref|YP_003534495.1|	-	0.058	12.8	0.0	0.15	11.5	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
DUF2620	PF10941.3	gi|292654598|ref|YP_003534495.1|	-	0.084	12.9	0.6	0.92	9.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF2620
NACHT	PF05729.7	gi|292654598|ref|YP_003534495.1|	-	0.11	12.1	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.22	gi|292654598|ref|YP_003534495.1|	-	0.12	12.7	0.0	0.28	11.4	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
DUF258	PF03193.11	gi|292654598|ref|YP_003534495.1|	-	0.12	11.5	0.0	0.24	10.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|292654598|ref|YP_003534495.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|292654598|ref|YP_003534495.1|	-	0.13	11.3	0.0	0.25	10.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Sigma54_activ_2	PF14532.1	gi|292654598|ref|YP_003534495.1|	-	0.15	12.1	0.0	0.35	10.8	0.0	1.6	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_7	PF12775.2	gi|292654598|ref|YP_003534495.1|	-	0.18	10.8	0.0	0.3	10.1	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D3
TrmB	PF01978.14	gi|292654599|ref|YP_003534496.1|	-	0.0018	17.9	0.1	0.0022	17.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292654599|ref|YP_003534496.1|	-	0.0071	16.0	0.0	0.011	15.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|292654599|ref|YP_003534496.1|	-	0.0084	15.5	0.1	0.013	14.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|292654599|ref|YP_003534496.1|	-	0.014	15.6	0.0	0.021	15.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.12	gi|292654599|ref|YP_003534496.1|	-	0.015	14.8	0.0	0.018	14.5	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_24	PF13412.1	gi|292654599|ref|YP_003534496.1|	-	0.024	14.0	0.0	0.036	13.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292654599|ref|YP_003534496.1|	-	0.04	13.5	0.0	0.055	13.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
PaaX	PF07848.7	gi|292654599|ref|YP_003534496.1|	-	0.07	13.1	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	PaaX-like	protein
HTH_11	PF08279.7	gi|292654599|ref|YP_003534496.1|	-	0.14	11.8	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
DUF1634	PF07843.6	gi|292654600|ref|YP_003534497.1|	-	0.00015	21.3	8.0	0.00041	19.9	5.6	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
ABC_tran	PF00005.22	gi|292654601|ref|YP_003534498.1|	-	1.7e-39	135.2	0.0	4.9e-20	72.2	0.0	3.0	2	1	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|292654601|ref|YP_003534498.1|	-	2.8e-15	57.0	0.2	1.6e-06	28.2	0.0	4.2	3	1	0	3	3	3	2	AAA	domain
SMC_N	PF02463.14	gi|292654601|ref|YP_003534498.1|	-	1.9e-14	53.4	3.9	0.00026	20.2	0.0	4.2	4	0	0	4	4	4	3	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.10	gi|292654601|ref|YP_003534498.1|	-	3e-11	42.6	0.3	5.6e-11	41.8	0.2	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_25	PF13481.1	gi|292654601|ref|YP_003534498.1|	-	1e-07	31.5	0.4	0.1	11.9	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
AAA_17	PF13207.1	gi|292654601|ref|YP_003534498.1|	-	2e-07	31.8	0.3	0.047	14.5	0.0	3.3	2	2	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|292654601|ref|YP_003534498.1|	-	7.3e-07	29.7	0.0	0.033	14.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|292654601|ref|YP_003534498.1|	-	1.7e-06	28.1	1.2	0.067	13.1	0.1	2.8	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654601|ref|YP_003534498.1|	-	4.8e-06	26.7	0.1	0.039	14.0	0.0	3.3	3	1	0	3	3	3	2	AAA	domain
AAA_29	PF13555.1	gi|292654601|ref|YP_003534498.1|	-	6.7e-06	25.5	0.2	0.04	13.4	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|292654601|ref|YP_003534498.1|	-	3.6e-05	23.9	0.0	0.043	14.0	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|292654601|ref|YP_003534498.1|	-	0.00037	20.6	0.0	1	9.5	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_14	PF13173.1	gi|292654601|ref|YP_003534498.1|	-	0.00039	20.3	0.0	1.2	9.0	0.0	3.4	3	1	0	3	3	3	1	AAA	domain
SbcCD_C	PF13558.1	gi|292654601|ref|YP_003534498.1|	-	0.00045	20.0	0.0	0.42	10.5	0.0	2.7	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.7	gi|292654601|ref|YP_003534498.1|	-	0.00047	19.8	0.0	0.75	9.4	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
Fer4	PF00037.22	gi|292654601|ref|YP_003534498.1|	-	0.00048	19.6	1.6	0.00048	19.6	1.1	2.7	3	0	0	3	3	3	1	4Fe-4S	binding	domain
DUF258	PF03193.11	gi|292654601|ref|YP_003534498.1|	-	0.0016	17.6	0.0	1.1	8.3	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|292654601|ref|YP_003534498.1|	-	0.0033	16.9	0.3	2.1	7.7	0.0	3.1	3	0	0	3	3	3	1	AAA-like	domain
MobB	PF03205.9	gi|292654601|ref|YP_003534498.1|	-	0.0033	17.1	0.7	2.3	7.9	0.1	3.2	3	0	0	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|292654601|ref|YP_003534498.1|	-	0.0037	17.5	0.0	2.5	8.4	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Fer4_6	PF12837.2	gi|292654601|ref|YP_003534498.1|	-	0.0042	16.9	1.9	0.0042	16.9	1.3	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_33	PF13671.1	gi|292654601|ref|YP_003534498.1|	-	0.0064	16.3	0.8	3.6	7.4	0.0	3.1	4	0	0	4	4	2	0	AAA	domain
NB-ARC	PF00931.17	gi|292654601|ref|YP_003534498.1|	-	0.013	14.4	0.2	0.76	8.5	0.1	2.2	2	0	0	2	2	2	0	NB-ARC	domain
Fer4_7	PF12838.2	gi|292654601|ref|YP_003534498.1|	-	0.013	15.8	9.9	0.03	14.7	6.9	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_28	PF13521.1	gi|292654601|ref|YP_003534498.1|	-	0.016	15.1	0.6	1.1	9.1	0.0	3.1	3	0	0	3	3	2	0	AAA	domain
AAA_24	PF13479.1	gi|292654601|ref|YP_003534498.1|	-	0.017	14.6	0.3	5.4	6.5	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
Miro	PF08477.8	gi|292654601|ref|YP_003534498.1|	-	0.02	15.4	0.0	8	6.9	0.0	2.8	2	1	1	3	3	2	0	Miro-like	protein
AAA_5	PF07728.9	gi|292654601|ref|YP_003534498.1|	-	0.039	13.6	0.0	6.3	6.5	0.0	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.18	gi|292654601|ref|YP_003534498.1|	-	0.065	13.1	0.0	5.5	6.9	0.0	2.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.1	gi|292654601|ref|YP_003534498.1|	-	0.086	11.8	0.0	3.4	6.6	0.0	2.6	3	0	0	3	3	3	0	AAA	ATPase	domain
Rad17	PF03215.10	gi|292654601|ref|YP_003534498.1|	-	0.12	11.0	0.0	1	7.9	0.0	2.2	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_13	PF13166.1	gi|292654601|ref|YP_003534498.1|	-	0.16	10.3	0.0	6.8	5.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|292654601|ref|YP_003534498.1|	-	0.17	10.5	2.1	2.9	6.5	0.1	2.2	2	0	0	2	2	2	0	ArgK	protein
NTPase_1	PF03266.10	gi|292654601|ref|YP_003534498.1|	-	0.2	11.3	2.5	12	5.5	0.1	3.0	4	0	0	4	4	2	0	NTPase
SRP54	PF00448.17	gi|292654601|ref|YP_003534498.1|	-	0.21	11.0	1.1	2.6	7.4	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Fer4_10	PF13237.1	gi|292654601|ref|YP_003534498.1|	-	0.34	10.7	11.3	0.65	9.8	7.8	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292654601|ref|YP_003534498.1|	-	0.38	10.6	8.0	0.7	9.7	5.5	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_19	PF13245.1	gi|292654601|ref|YP_003534498.1|	-	0.41	10.4	3.2	6.2	6.6	0.0	3.2	3	0	0	3	3	3	0	Part	of	AAA	domain
Fer4_16	PF13484.1	gi|292654601|ref|YP_003534498.1|	-	0.45	11.3	7.8	0.12	13.1	0.9	2.0	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|292654601|ref|YP_003534498.1|	-	0.5	10.3	12.9	0.26	11.2	1.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|292654601|ref|YP_003534498.1|	-	0.57	10.4	10.6	1.1	9.5	7.3	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
IstB_IS21	PF01695.12	gi|292654601|ref|YP_003534498.1|	-	0.74	9.2	2.1	16	4.8	0.1	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Fer4_3	PF12798.2	gi|292654601|ref|YP_003534498.1|	-	3.6	8.3	12.7	0.12	13.0	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Glyoxalase_2	PF12681.2	gi|292654602|ref|YP_003534499.1|	-	1.9e-18	67.0	0.8	5.4e-08	33.4	0.0	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|292654602|ref|YP_003534499.1|	-	8.9e-18	64.5	0.2	4.3e-09	36.4	0.0	2.4	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|292654602|ref|YP_003534499.1|	-	8e-05	22.6	0.5	0.37	10.8	0.0	2.5	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
PBP	PF01161.15	gi|292654603|ref|YP_003534500.1|	-	1.2e-33	115.9	0.0	1.5e-33	115.7	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
RTC	PF01137.16	gi|292654604|ref|YP_003534501.1|	-	1.3e-68	230.2	0.0	1.5e-68	229.9	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|292654604|ref|YP_003534501.1|	-	1.2e-09	38.0	1.2	7.3e-09	35.5	0.8	2.1	1	1	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
Usp	PF00582.21	gi|292654605|ref|YP_003534502.1|	-	7.1e-27	94.3	4.7	8.7e-27	94.0	3.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|292654605|ref|YP_003534502.1|	-	7.3e-05	22.1	0.4	9.9e-05	21.7	0.3	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Peptidase_M54	PF07998.6	gi|292654606|ref|YP_003534503.1|	-	2e-22	79.9	0.1	2.4e-22	79.6	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.19	gi|292654606|ref|YP_003534503.1|	-	2.6e-05	23.9	0.0	3.9e-05	23.4	0.0	1.2	1	1	0	1	1	1	1	Matrixin
Reprolysin_4	PF13583.1	gi|292654606|ref|YP_003534503.1|	-	3.2e-05	23.5	0.0	3.7e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.1	gi|292654606|ref|YP_003534503.1|	-	4.1e-05	23.7	0.0	4.8e-05	23.4	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.1	gi|292654606|ref|YP_003534503.1|	-	0.00035	21.1	0.0	0.00043	20.7	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.1	gi|292654606|ref|YP_003534503.1|	-	0.00081	19.3	0.0	0.00085	19.3	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
DUF1025	PF06262.6	gi|292654606|ref|YP_003534503.1|	-	0.0016	18.1	0.0	0.0026	17.5	0.0	1.3	1	0	0	1	1	1	1	Possibl	zinc	metallo-peptidase
Peptidase_M66	PF10462.4	gi|292654606|ref|YP_003534503.1|	-	0.0084	15.0	0.0	0.01	14.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	M66
Reprolysin	PF01421.14	gi|292654606|ref|YP_003534503.1|	-	0.019	14.5	0.0	0.024	14.2	0.0	1.2	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
Peptidase_M43	PF05572.8	gi|292654606|ref|YP_003534503.1|	-	0.02	14.4	0.3	0.043	13.4	0.1	1.5	1	1	1	2	2	2	0	Pregnancy-associated	plasma	protein-A
Metallopep	PF12044.3	gi|292654606|ref|YP_003534503.1|	-	0.023	13.1	0.2	0.032	12.7	0.1	1.2	1	0	0	1	1	1	0	Putative	peptidase	family
TIR-like	PF10137.4	gi|292654606|ref|YP_003534503.1|	-	0.075	12.6	0.1	0.36	10.4	0.0	1.9	1	1	1	2	2	2	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
Peptidase_M57	PF12388.3	gi|292654606|ref|YP_003534503.1|	-	0.091	12.0	0.0	0.19	11.0	0.0	1.5	2	0	0	2	2	2	0	Dual-action	HEIGH	metallo-peptidase
UPF0146	PF03686.8	gi|292654607|ref|YP_003534504.1|	-	2.4e-20	72.6	0.0	2.9e-20	72.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
HAD_2	PF13419.1	gi|292654608|ref|YP_003534505.1|	-	1.3e-11	45.0	1.7	7.2e-10	39.3	1.2	2.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292654608|ref|YP_003534505.1|	-	1.3e-07	32.2	0.5	5.1e-07	30.3	0.4	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292654608|ref|YP_003534505.1|	-	1.2e-05	24.8	0.3	4.6e-05	23.0	0.2	2.0	1	1	0	1	1	1	1	HAD-hyrolase-like
F420_oxidored	PF03807.12	gi|292654610|ref|YP_003534507.1|	-	4.3e-22	78.3	0.0	6.5e-22	77.7	0.0	1.3	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.1	gi|292654610|ref|YP_003534507.1|	-	0.00036	20.5	0.4	0.00054	20.0	0.2	1.4	1	1	0	1	1	1	1	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|292654610|ref|YP_003534507.1|	-	0.00038	20.2	0.0	0.00059	19.5	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Semialdhyde_dh	PF01118.19	gi|292654610|ref|YP_003534507.1|	-	0.001	19.3	0.0	0.0015	18.8	0.0	1.3	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|292654610|ref|YP_003534507.1|	-	0.0026	17.1	0.0	0.0033	16.8	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.17	gi|292654610|ref|YP_003534507.1|	-	0.0027	18.2	0.0	0.0053	17.2	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
PDH	PF02153.12	gi|292654610|ref|YP_003534507.1|	-	0.0065	15.3	0.0	0.0091	14.9	0.0	1.2	1	0	0	1	1	1	1	Prephenate	dehydrogenase
adh_short	PF00106.20	gi|292654610|ref|YP_003534507.1|	-	0.018	14.9	2.9	0.034	14.0	0.1	2.4	1	1	1	2	2	2	0	short	chain	dehydrogenase
Bac_luciferase	PF00296.15	gi|292654610|ref|YP_003534507.1|	-	0.028	13.5	1.6	0.032	13.3	0.5	1.5	2	0	0	2	2	2	0	Luciferase-like	monooxygenase
KR	PF08659.5	gi|292654610|ref|YP_003534507.1|	-	0.052	13.2	0.2	0.15	11.7	0.0	1.9	2	1	0	2	2	2	0	KR	domain
DapB_N	PF01113.15	gi|292654610|ref|YP_003534507.1|	-	0.12	12.3	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
MFS_1	PF07690.11	gi|292654611|ref|YP_003534508.1|	-	4.3e-50	170.4	70.6	1e-37	129.7	28.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|292654611|ref|YP_003534508.1|	-	0.0072	16.0	0.4	0.066	13.0	0.0	2.5	2	0	0	2	2	2	1	MFS_1	like	family
UNC-93	PF05978.11	gi|292654611|ref|YP_003534508.1|	-	0.091	12.2	2.5	0.14	11.6	0.0	2.3	2	0	0	2	2	2	0	Ion	channel	regulatory	protein	UNC-93
PTR2	PF00854.16	gi|292654611|ref|YP_003534508.1|	-	1.3	7.7	10.0	0.02	13.6	1.3	2.0	2	0	0	2	2	2	0	POT	family
PRA-PH	PF01503.12	gi|292654612|ref|YP_003534509.1|	-	4.6e-12	46.0	1.0	5.6e-12	45.7	0.7	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
SLS	PF14611.1	gi|292654612|ref|YP_003534509.1|	-	0.05	13.0	0.0	0.058	12.8	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	inner-membrane-bound	regulator
MazG	PF03819.12	gi|292654612|ref|YP_003534509.1|	-	0.36	10.7	3.5	0.2	11.6	1.2	1.5	2	0	0	2	2	2	0	MazG	nucleotide	pyrophosphohydrolase	domain
Calpain_inhib	PF00748.14	gi|292654612|ref|YP_003534509.1|	-	5.9	7.2	6.7	0.36	11.1	1.1	1.5	2	0	0	2	2	2	0	Calpain	inhibitor
SNO	PF01174.14	gi|292654613|ref|YP_003534510.1|	-	2e-53	180.8	0.0	2.3e-53	180.6	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|292654613|ref|YP_003534510.1|	-	6e-10	38.9	0.0	1.8e-09	37.3	0.0	1.7	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|292654613|ref|YP_003534510.1|	-	1.8e-05	24.2	0.0	4e-05	23.1	0.0	1.5	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_S51	PF03575.12	gi|292654613|ref|YP_003534510.1|	-	0.00085	19.0	0.0	0.0012	18.5	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.19	gi|292654613|ref|YP_003534510.1|	-	0.0012	18.3	0.1	0.0017	17.8	0.1	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|292654613|ref|YP_003534510.1|	-	0.045	13.0	0.1	0.064	12.5	0.1	1.3	1	0	0	1	1	1	0	Putative	amidotransferase
BPL_N	PF09825.4	gi|292654613|ref|YP_003534510.1|	-	0.13	10.9	0.0	0.73	8.5	0.0	2.0	2	1	0	2	2	2	0	Biotin-protein	ligase,	N	terminal
Sec61_beta	PF03911.11	gi|292654614|ref|YP_003534511.1|	-	1.1e-05	25.0	0.0	1.5e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Sec61beta	family
Thioredoxin	PF00085.15	gi|292654615|ref|YP_003534512.1|	-	1.3e-22	79.3	0.0	1.6e-22	79.1	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|292654615|ref|YP_003534512.1|	-	1.3e-08	34.8	0.2	1.7e-06	28.0	0.0	2.0	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|292654615|ref|YP_003534512.1|	-	2.8e-07	30.7	0.0	1.8e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Redoxin	PF08534.5	gi|292654615|ref|YP_003534512.1|	-	4.5e-05	23.0	0.3	0.078	12.5	0.0	2.0	1	1	1	2	2	2	2	Redoxin
Thioredoxin_7	PF13899.1	gi|292654615|ref|YP_003534512.1|	-	0.00018	21.4	0.7	0.00043	20.2	0.2	1.8	2	1	0	2	2	2	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|292654615|ref|YP_003534512.1|	-	0.00019	21.0	0.0	0.00022	20.7	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.16	gi|292654615|ref|YP_003534512.1|	-	0.0013	18.4	0.2	0.0039	16.8	0.1	1.7	1	1	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_3	PF13192.1	gi|292654615|ref|YP_003534512.1|	-	0.0024	17.6	0.0	0.0025	17.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.19	gi|292654615|ref|YP_003534512.1|	-	0.0031	17.4	0.1	0.0052	16.7	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
DSBA	PF01323.15	gi|292654615|ref|YP_003534512.1|	-	0.0053	16.3	0.3	0.037	13.5	0.0	1.9	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
TraF	PF13728.1	gi|292654615|ref|YP_003534512.1|	-	0.018	14.5	0.0	0.021	14.3	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
DUF836	PF05768.9	gi|292654615|ref|YP_003534512.1|	-	0.025	14.8	0.1	0.028	14.6	0.0	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Phosducin	PF02114.11	gi|292654615|ref|YP_003534512.1|	-	0.058	12.1	0.0	0.061	12.0	0.0	1.0	1	0	0	1	1	1	0	Phosducin
Thioredoxin_5	PF13743.1	gi|292654615|ref|YP_003534512.1|	-	0.12	11.9	0.1	0.13	11.8	0.1	1.1	1	0	0	1	1	1	0	Thioredoxin
Ribosomal_L40e	PF01020.12	gi|292654616|ref|YP_003534513.1|	-	2.8e-06	26.8	8.1	3.3e-06	26.5	5.6	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DZR	PF12773.2	gi|292654616|ref|YP_003534513.1|	-	0.00016	21.4	2.2	0.00017	21.2	1.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|292654616|ref|YP_003534513.1|	-	0.00092	18.6	2.3	0.0012	18.2	1.6	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|292654616|ref|YP_003534513.1|	-	0.0035	16.7	4.3	0.0056	16.1	3.0	1.3	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-DHHC	PF01529.15	gi|292654616|ref|YP_003534513.1|	-	0.0037	16.6	3.3	0.0038	16.6	2.3	1.0	1	0	0	1	1	1	1	DHHC	palmitoyltransferase
zf-ribbon_3	PF13248.1	gi|292654616|ref|YP_003534513.1|	-	0.0053	15.9	1.7	0.0066	15.6	1.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
Toxin_5	PF05294.8	gi|292654616|ref|YP_003534513.1|	-	0.038	14.1	2.3	0.058	13.6	1.6	1.3	1	0	0	1	1	1	0	Scorpion	short	toxin
Cript	PF10235.4	gi|292654616|ref|YP_003534513.1|	-	0.11	12.8	3.3	0.12	12.7	2.3	1.1	1	0	0	1	1	1	0	Microtubule-associated	protein	CRIPT
HIPIP	PF01355.12	gi|292654616|ref|YP_003534513.1|	-	0.21	11.7	1.8	0.25	11.4	1.2	1.3	1	0	0	1	1	1	0	High	potential	iron-sulfur	protein
RNA_POL_M_15KD	PF02150.11	gi|292654616|ref|YP_003534513.1|	-	0.95	9.2	5.8	6.4	6.5	4.0	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF4203	PF13886.1	gi|292654617|ref|YP_003534514.1|	-	0.037	13.4	3.0	0.056	12.9	2.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4203)
7TM-7TMR_HD	PF07698.6	gi|292654617|ref|YP_003534514.1|	-	0.037	13.4	3.4	0.05	13.0	2.3	1.3	1	0	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
SKG6	PF08693.5	gi|292654617|ref|YP_003534514.1|	-	0.13	11.6	3.9	4.5	6.6	0.2	2.7	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
Lactamase_B	PF00753.22	gi|292654618|ref|YP_003534515.1|	-	1.6e-21	76.8	9.4	2.3e-21	76.3	6.5	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292654618|ref|YP_003534515.1|	-	4e-05	23.2	0.7	5.2e-05	22.8	0.5	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292654618|ref|YP_003534515.1|	-	0.016	14.8	1.4	0.022	14.4	1.0	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DUF99	PF01949.11	gi|292654620|ref|YP_003534517.1|	-	2.1e-47	160.6	0.0	3.6e-47	159.8	0.0	1.3	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF99
UDG	PF03167.14	gi|292654621|ref|YP_003534518.1|	-	5.2e-34	116.8	0.0	6.4e-34	116.6	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
ABC_tran	PF00005.22	gi|292654623|ref|YP_003534520.1|	-	1.7e-33	115.7	0.0	2.4e-33	115.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292654623|ref|YP_003534520.1|	-	1.2e-08	35.3	0.0	0.0014	18.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
DUF258	PF03193.11	gi|292654623|ref|YP_003534520.1|	-	2.6e-05	23.4	0.0	3.7e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|292654623|ref|YP_003534520.1|	-	8.1e-05	22.6	1.8	0.0013	18.7	1.2	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292654623|ref|YP_003534520.1|	-	0.00048	19.6	0.1	0.0011	18.4	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|292654623|ref|YP_003534520.1|	-	0.0005	19.3	0.0	0.23	10.6	0.0	2.2	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|292654623|ref|YP_003534520.1|	-	0.0015	17.6	0.0	0.91	8.5	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654623|ref|YP_003534520.1|	-	0.0018	18.4	0.4	0.017	15.2	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|292654623|ref|YP_003534520.1|	-	0.0044	16.8	0.4	0.1	12.4	0.2	2.6	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|292654623|ref|YP_003534520.1|	-	0.013	15.8	0.0	0.02	15.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|292654623|ref|YP_003534520.1|	-	0.021	14.2	0.0	0.058	12.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Miro	PF08477.8	gi|292654623|ref|YP_003534520.1|	-	0.023	15.1	0.0	0.067	13.6	0.0	1.8	2	0	0	2	2	1	0	Miro-like	protein
AAA_10	PF12846.2	gi|292654623|ref|YP_003534520.1|	-	0.027	13.9	0.5	0.057	12.8	0.4	1.8	1	1	0	1	1	1	0	AAA-like	domain
AAA_30	PF13604.1	gi|292654623|ref|YP_003534520.1|	-	0.036	13.6	0.0	0.082	12.4	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|292654623|ref|YP_003534520.1|	-	0.042	13.7	0.1	0.064	13.2	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|292654623|ref|YP_003534520.1|	-	0.05	12.6	0.0	0.11	11.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
Dynamin_N	PF00350.18	gi|292654623|ref|YP_003534520.1|	-	0.069	12.9	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
AAA_17	PF13207.1	gi|292654623|ref|YP_003534520.1|	-	0.11	13.3	0.4	1.5	9.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|292654623|ref|YP_003534520.1|	-	0.11	10.9	0.0	2.5	6.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|292654623|ref|YP_003534520.1|	-	0.14	11.8	0.1	0.28	10.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Phosphonate-bd	PF12974.2	gi|292654624|ref|YP_003534521.1|	-	1.5e-54	184.9	0.6	1.9e-54	184.6	0.4	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|292654624|ref|YP_003534521.1|	-	0.0051	16.4	0.1	0.0078	15.8	0.0	1.2	1	0	0	1	1	1	1	NMT1/THI5	like
SSP160	PF06933.6	gi|292654624|ref|YP_003534521.1|	-	0.33	8.8	7.9	0.5	8.2	5.5	1.2	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
GATase	PF00117.23	gi|292654625|ref|YP_003534522.1|	-	1.6e-32	112.5	0.0	2e-32	112.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|292654625|ref|YP_003534522.1|	-	2.7e-09	36.7	0.0	4.8e-09	35.9	0.0	1.5	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.14	gi|292654625|ref|YP_003534522.1|	-	1.4e-06	28.0	0.0	0.00064	19.4	0.0	2.0	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.8	gi|292654625|ref|YP_003534522.1|	-	1.6e-06	27.7	0.3	8.2e-06	25.4	0.1	2.1	2	1	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|292654625|ref|YP_003534522.1|	-	0.00036	20.0	0.0	0.00065	19.1	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
PDT	PF00800.13	gi|292654626|ref|YP_003534523.1|	-	8.1e-47	159.1	0.3	1e-46	158.7	0.2	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|292654626|ref|YP_003534523.1|	-	2e-06	27.1	0.1	6.9e-06	25.4	0.0	2.0	2	1	0	2	2	2	1	ACT	domain
TIP39	PF14980.1	gi|292654626|ref|YP_003534523.1|	-	0.13	11.9	0.1	0.31	10.7	0.0	1.6	1	0	0	1	1	1	0	TIP39	peptide
HSP20	PF00011.16	gi|292654627|ref|YP_003534524.1|	-	2.6e-24	85.0	0.4	3.2e-24	84.7	0.3	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
DUF4097	PF13349.1	gi|292654627|ref|YP_003534524.1|	-	0.04	13.4	0.0	0.062	12.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4097)
CS	PF04969.11	gi|292654627|ref|YP_003534524.1|	-	0.091	13.3	0.0	0.17	12.4	0.0	1.4	1	1	0	1	1	1	0	CS	domain
ComJ	PF11033.3	gi|292654627|ref|YP_003534524.1|	-	0.094	12.3	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Competence	protein	J	(ComJ)
HSP20	PF00011.16	gi|292654628|ref|YP_003534525.1|	-	2.6e-21	75.3	0.0	3.7e-21	74.9	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|292654628|ref|YP_003534525.1|	-	0.0012	18.3	0.0	0.0015	18.0	0.0	1.1	1	0	0	1	1	1	1	pre-RNA	processing	PIH1/Nop17
CS	PF04969.11	gi|292654628|ref|YP_003534525.1|	-	0.13	12.8	0.0	0.2	12.2	0.0	1.3	1	0	0	1	1	1	0	CS	domain
PsiB	PF06290.6	gi|292654628|ref|YP_003534525.1|	-	0.13	11.6	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Plasmid	SOS	inhibition	protein	(PsiB)
tRNA-synt_1	PF00133.17	gi|292654629|ref|YP_003534526.1|	-	1.3e-52	178.6	0.0	4.8e-41	140.4	0.0	3.0	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|292654629|ref|YP_003534526.1|	-	2e-23	82.7	0.2	5.7e-10	38.4	0.0	3.2	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|292654629|ref|YP_003534526.1|	-	7.8e-21	74.4	0.1	1.3e-20	73.6	0.1	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.1	gi|292654629|ref|YP_003534526.1|	-	1.9e-09	37.0	0.0	3.4e-09	36.2	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|292654629|ref|YP_003534526.1|	-	4.3e-05	22.7	0.0	0.12	11.4	0.0	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|292654629|ref|YP_003534526.1|	-	0.0017	17.1	0.0	0.031	12.9	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
NapE	PF06796.6	gi|292654630|ref|YP_003534527.1|	-	0.061	12.6	0.4	0.087	12.1	0.3	1.4	1	0	0	1	1	1	0	Periplasmic	nitrate	reductase	protein	NapE
DUF4014	PF13198.1	gi|292654630|ref|YP_003534527.1|	-	0.27	11.6	1.1	0.32	11.4	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4014)
OCD_Mu_crystall	PF02423.10	gi|292654631|ref|YP_003534528.1|	-	5.4e-95	317.7	0.1	6.3e-95	317.5	0.1	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|292654631|ref|YP_003534528.1|	-	0.0018	18.3	0.1	0.0029	17.7	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
DUF4298	PF14131.1	gi|292654631|ref|YP_003534528.1|	-	0.15	11.9	0.1	1.9	8.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Cpn60_TCP1	PF00118.19	gi|292654632|ref|YP_003534529.1|	-	7.3e-154	512.9	7.4	8.3e-154	512.7	5.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Peptidase_S49	PF01343.13	gi|292654632|ref|YP_003534529.1|	-	4.4	7.0	8.5	8.4	6.1	0.1	3.6	4	0	0	4	4	4	0	Peptidase	family	S49
CBM_6	PF03422.10	gi|292654633|ref|YP_003534530.1|	-	0.0016	18.6	0.1	0.0024	17.9	0.1	1.3	1	0	0	1	1	1	1	Carbohydrate	binding	module	(family	6)
Ribonuc_L-PSP	PF01042.16	gi|292654635|ref|YP_003534532.1|	-	2.8e-41	140.0	0.2	3.2e-41	139.8	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.1	gi|292654635|ref|YP_003534532.1|	-	0.013	15.4	0.1	0.019	14.8	0.1	1.5	1	1	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
CbtB	PF09489.5	gi|292654636|ref|YP_003534533.1|	-	1.5	8.7	5.0	12	5.8	0.7	2.1	1	1	0	2	2	2	0	Probable	cobalt	transporter	subunit	(CbtB)
Cyto_ox_2	PF02322.10	gi|292654637|ref|YP_003534534.1|	-	2.1e-68	230.9	34.6	3.2e-68	230.3	24.0	1.3	1	1	0	1	1	1	1	Cytochrome	oxidase	subunit	II
Bac_Ubq_Cox	PF01654.12	gi|292654638|ref|YP_003534535.1|	-	1.6e-139	465.1	19.1	1.8e-139	464.9	13.2	1.0	1	0	0	1	1	1	1	Bacterial	Cytochrome	Ubiquinol	Oxidase
PALP	PF00291.20	gi|292654640|ref|YP_003534537.1|	-	2.6e-79	266.6	5.7	3.1e-79	266.3	4.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.1	gi|292654640|ref|YP_003534537.1|	-	1.3e-06	28.6	0.0	1.1e-05	25.6	0.0	2.3	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|292654640|ref|YP_003534537.1|	-	0.024	14.1	1.1	0.064	12.7	0.0	2.3	2	0	0	2	2	2	0	ACT	domain
DegT_DnrJ_EryC1	PF01041.12	gi|292654640|ref|YP_003534537.1|	-	0.03	13.3	0.1	0.062	12.3	0.1	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
ACT_6	PF13740.1	gi|292654640|ref|YP_003534537.1|	-	0.048	13.3	0.0	0.1	12.3	0.0	1.5	1	0	0	1	1	1	0	ACT	domain
LIME1	PF15332.1	gi|292654640|ref|YP_003534537.1|	-	0.12	11.6	0.1	0.19	10.9	0.1	1.3	1	0	0	1	1	1	0	Lck-interacting	transmembrane	adapter	1
Pep_deformylase	PF01327.16	gi|292654640|ref|YP_003534537.1|	-	0.25	10.7	1.0	7.5	5.9	0.1	2.9	2	1	1	3	3	3	0	Polypeptide	deformylase
MatE	PF01554.13	gi|292654641|ref|YP_003534538.1|	-	8.6e-31	106.7	25.2	2.6e-18	66.1	5.0	3.0	3	0	0	3	3	3	2	MatE
MVIN	PF03023.9	gi|292654641|ref|YP_003534538.1|	-	2e-08	33.1	5.3	4e-08	32.1	3.7	1.4	1	0	0	1	1	1	1	MviN-like	protein
Polysacc_synt_C	PF14667.1	gi|292654641|ref|YP_003534538.1|	-	3.5e-08	33.3	19.4	8.9e-08	32.0	2.8	3.6	5	0	0	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
Citrate_synt	PF00285.16	gi|292654642|ref|YP_003534539.1|	-	1.2e-131	438.7	0.0	1.3e-131	438.5	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
TrkA_C	PF02080.16	gi|292654643|ref|YP_003534540.1|	-	2.1e-28	97.7	1.2	4e-16	58.3	0.0	2.7	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.14	gi|292654643|ref|YP_003534540.1|	-	2.1e-14	53.6	7.1	5.4e-08	33.1	1.7	2.4	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.11	gi|292654643|ref|YP_003534540.1|	-	0.00016	20.9	0.5	0.49	9.5	0.2	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF47
HALZ	PF02183.13	gi|292654643|ref|YP_003534540.1|	-	0.034	13.8	0.2	2	8.2	0.0	2.4	2	0	0	2	2	2	0	Homeobox	associated	leucine	zipper
DivIC	PF04977.10	gi|292654643|ref|YP_003534540.1|	-	0.07	12.6	0.9	12	5.4	0.0	2.4	2	0	0	2	2	2	0	Septum	formation	initiator
KfrA_N	PF11740.3	gi|292654643|ref|YP_003534540.1|	-	3.1	8.2	9.1	0.4	11.1	0.2	3.1	3	0	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
Gly-zipper_YMGG	PF13441.1	gi|292654644|ref|YP_003534541.1|	-	0.095	12.2	2.8	0.16	11.5	1.9	1.3	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
FtsX	PF02687.16	gi|292654644|ref|YP_003534541.1|	-	0.68	9.6	6.5	1.2	8.9	4.5	1.4	1	1	0	1	1	1	0	FtsX-like	permease	family
VMA21	PF09446.5	gi|292654644|ref|YP_003534541.1|	-	2.7	7.9	5.5	2.9	7.8	0.7	2.1	2	0	0	2	2	2	0	VMA21-like	domain
Syndecan	PF01034.15	gi|292654644|ref|YP_003534541.1|	-	3.7	7.2	5.4	5.9	6.6	0.3	2.1	2	0	0	2	2	2	0	Syndecan	domain
AstE_AspA	PF04952.9	gi|292654645|ref|YP_003534542.1|	-	2.5e-55	187.4	0.0	2.8e-55	187.2	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
PALP	PF00291.20	gi|292654646|ref|YP_003534543.1|	-	1.1e-56	192.3	1.6	1.3e-56	192.1	1.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
OprD	PF03573.8	gi|292654646|ref|YP_003534543.1|	-	0.092	11.5	0.0	0.14	10.9	0.0	1.1	1	0	0	1	1	1	0	outer	membrane	porin,	OprD	family
DUF972	PF06156.8	gi|292654647|ref|YP_003534544.1|	-	0.15	12.4	0.0	0.25	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Kinetocho_Slk19	PF12709.2	gi|292654647|ref|YP_003534544.1|	-	0.17	12.0	0.8	0.27	11.3	0.6	1.3	1	0	0	1	1	1	0	Central	kinetochore-associated
DUF2892	PF11127.3	gi|292654648|ref|YP_003534545.1|	-	4.4e-14	52.0	5.3	3.6e-13	49.1	3.7	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF1772	PF08592.6	gi|292654648|ref|YP_003534545.1|	-	0.0035	17.0	1.0	0.0037	16.9	0.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1772)
Arabinose_trans	PF04602.7	gi|292654648|ref|YP_003534545.1|	-	0.14	10.2	3.2	0.16	10.1	2.2	1.0	1	0	0	1	1	1	0	Mycobacterial	cell	wall	arabinan	synthesis	protein
IncA	PF04156.9	gi|292654648|ref|YP_003534545.1|	-	3.2	7.2	8.3	3.8	7.0	5.7	1.1	1	0	0	1	1	1	0	IncA	protein
PCMT	PF01135.14	gi|292654650|ref|YP_003534547.1|	-	9.8e-37	126.5	0.0	1.3e-36	126.1	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|292654650|ref|YP_003534547.1|	-	3.4e-09	37.2	0.1	6.9e-09	36.2	0.1	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654650|ref|YP_003534547.1|	-	8.1e-07	28.7	0.0	1.1e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292654650|ref|YP_003534547.1|	-	9.6e-07	28.3	0.0	1.8e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|292654650|ref|YP_003534547.1|	-	1.5e-05	25.0	4.7	0.00012	22.1	1.3	2.8	2	2	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292654650|ref|YP_003534547.1|	-	0.00016	20.7	0.0	0.00023	20.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.7	gi|292654650|ref|YP_003534547.1|	-	0.0011	19.3	0.0	0.0019	18.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292654650|ref|YP_003534547.1|	-	0.0031	17.9	0.0	0.0052	17.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654650|ref|YP_003534547.1|	-	0.018	14.7	0.0	0.03	14.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|292654650|ref|YP_003534547.1|	-	0.02	13.8	0.0	0.026	13.4	0.0	1.1	1	0	0	1	1	1	0	Fibrillarin
Met_10	PF02475.11	gi|292654650|ref|YP_003534547.1|	-	0.026	14.1	0.0	0.034	13.7	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_32	PF13679.1	gi|292654650|ref|YP_003534547.1|	-	0.068	12.8	0.0	0.1	12.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Nol1_Nop2_Fmu	PF01189.12	gi|292654650|ref|YP_003534547.1|	-	0.069	12.5	0.0	0.16	11.3	0.0	1.5	2	0	0	2	2	2	0	NOL1/NOP2/sun	family
UPF0020	PF01170.13	gi|292654650|ref|YP_003534547.1|	-	0.083	12.4	0.0	0.56	9.7	0.0	1.9	1	1	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
PrmA	PF06325.8	gi|292654650|ref|YP_003534547.1|	-	0.085	11.9	0.1	0.11	11.5	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_3	PF01596.12	gi|292654650|ref|YP_003534547.1|	-	0.16	11.0	0.0	0.21	10.5	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
Phage_base_V	PF04717.7	gi|292654650|ref|YP_003534547.1|	-	0.29	11.1	0.1	0.29	11.1	0.0	1.9	2	0	0	2	2	1	0	Phage-related	baseplate	assembly	protein
Methyltransf_23	PF13489.1	gi|292654651|ref|YP_003534548.1|	-	8.9e-08	32.0	0.0	4.3e-07	29.8	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654651|ref|YP_003534548.1|	-	5.3e-05	23.7	0.4	0.00013	22.4	0.3	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292654651|ref|YP_003534548.1|	-	0.00037	20.7	0.0	0.00087	19.6	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654651|ref|YP_003534548.1|	-	0.0039	17.2	2.6	0.0039	17.2	1.8	2.4	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|292654651|ref|YP_003534548.1|	-	0.026	13.7	0.6	0.036	13.2	0.4	1.3	1	0	0	1	1	1	0	O-methyltransferase
MTS	PF05175.9	gi|292654651|ref|YP_003534548.1|	-	0.079	12.3	0.0	0.22	10.8	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	small	domain
DUF4423	PF14394.1	gi|292654651|ref|YP_003534548.1|	-	0.15	11.5	0.0	0.24	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2387	PF09526.5	gi|292654652|ref|YP_003534549.1|	-	0.0045	16.8	1.8	0.01	15.7	1.2	1.5	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1	PF03811.8	gi|292654652|ref|YP_003534549.1|	-	0.026	13.9	3.2	0.073	12.5	1.5	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Lar_restr_allev	PF14354.1	gi|292654652|ref|YP_003534549.1|	-	0.12	12.6	1.1	0.32	11.3	0.8	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_5	PF13719.1	gi|292654652|ref|YP_003534549.1|	-	0.55	9.8	5.3	2.5	7.7	3.7	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654652|ref|YP_003534549.1|	-	0.68	9.6	5.3	3.7	7.3	3.6	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Peptidase_M29	PF02073.10	gi|292654653|ref|YP_003534550.1|	-	1.1e-19	70.5	0.4	8e-16	57.7	0.2	2.1	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
Paramyxo_PNT	PF13825.1	gi|292654653|ref|YP_003534550.1|	-	0.062	12.5	0.0	0.1	11.8	0.0	1.3	1	0	0	1	1	1	0	Paramyxovirus	structural	protein	V/P	N-terminus
Gp_dh_N	PF00044.19	gi|292654654|ref|YP_003534551.1|	-	1.2e-18	67.4	0.1	1.5e-17	63.9	0.1	2.2	1	1	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.15	gi|292654654|ref|YP_003534551.1|	-	1.8e-15	56.7	0.0	2.8e-15	56.1	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.15	gi|292654654|ref|YP_003534551.1|	-	4.2e-11	42.8	0.0	9e-11	41.7	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_3	PF03447.11	gi|292654654|ref|YP_003534551.1|	-	8.5e-06	26.1	0.0	3.4e-05	24.2	0.0	1.9	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|292654654|ref|YP_003534551.1|	-	0.00039	20.9	0.0	0.0025	18.3	0.0	2.2	1	1	1	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.14	gi|292654654|ref|YP_003534551.1|	-	0.00059	19.0	0.1	0.023	13.8	0.1	2.3	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.19	gi|292654654|ref|YP_003534551.1|	-	0.012	15.8	0.1	0.043	14.1	0.0	1.8	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Metallophos_2	PF12850.2	gi|292654655|ref|YP_003534552.1|	-	6e-31	107.4	2.4	6.7e-31	107.2	1.6	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292654655|ref|YP_003534552.1|	-	2.1e-06	27.2	4.8	0.00067	19.1	3.3	2.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|292654655|ref|YP_003534552.1|	-	0.0004	19.6	0.1	0.0077	15.4	0.0	2.1	1	1	1	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
PGK	PF00162.14	gi|292654656|ref|YP_003534553.1|	-	4.5e-110	367.8	0.1	5.1e-110	367.6	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Gp_dh_C	PF02800.15	gi|292654657|ref|YP_003534554.1|	-	8e-59	197.5	0.0	1.1e-58	197.1	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.19	gi|292654657|ref|YP_003534554.1|	-	3.6e-53	179.5	0.0	5.1e-53	179.0	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|292654657|ref|YP_003534554.1|	-	0.00056	19.8	0.1	0.0019	18.1	0.0	2.0	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_3	PF03447.11	gi|292654657|ref|YP_003534554.1|	-	0.02	15.2	0.0	0.12	12.7	0.0	2.1	1	1	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|292654657|ref|YP_003534554.1|	-	0.042	13.7	0.0	0.083	12.7	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	dimerisation	domain
ADH_zinc_N	PF00107.21	gi|292654657|ref|YP_003534554.1|	-	0.068	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
HSP20	PF00011.16	gi|292654658|ref|YP_003534555.1|	-	5.1e-09	35.9	0.0	1.8e-07	30.9	0.0	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|292654658|ref|YP_003534555.1|	-	3e-05	23.7	0.6	3.4e-05	23.5	0.4	1.2	1	0	0	1	1	1	1	GvpH
PIH1	PF08190.7	gi|292654658|ref|YP_003534555.1|	-	0.057	12.8	0.0	0.069	12.5	0.0	1.1	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
RimK	PF08443.6	gi|292654659|ref|YP_003534556.1|	-	1.1e-24	86.9	0.0	1.5e-24	86.5	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|292654659|ref|YP_003534556.1|	-	1.2e-16	61.0	0.0	1.7e-16	60.5	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|292654659|ref|YP_003534556.1|	-	9.3e-09	34.6	0.0	1.3e-08	34.2	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|292654659|ref|YP_003534556.1|	-	1.3e-06	27.9	0.0	3.1e-06	26.7	0.0	1.6	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.9	gi|292654659|ref|YP_003534556.1|	-	1.6e-06	28.0	0.0	5.8e-06	26.2	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|292654659|ref|YP_003534556.1|	-	3.6e-05	22.6	0.0	0.00011	21.0	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|292654659|ref|YP_003534556.1|	-	0.00068	18.9	0.0	0.00091	18.5	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.1	gi|292654659|ref|YP_003534556.1|	-	0.027	13.5	0.0	0.075	12.1	0.0	1.6	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
Ins134_P3_kin	PF05770.6	gi|292654659|ref|YP_003534556.1|	-	0.049	12.6	0.0	0.21	10.5	0.0	1.8	2	0	0	2	2	2	0	Inositol	1,	3,	4-trisphosphate	5/6-kinase
Ribosomal_L16	PF00252.13	gi|292654660|ref|YP_003534557.1|	-	3.9e-31	107.5	0.1	4.5e-31	107.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
PYNP_C	PF07831.8	gi|292654660|ref|YP_003534557.1|	-	0.13	11.7	0.0	0.28	10.6	0.0	1.6	1	0	0	1	1	1	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
rve	PF00665.21	gi|292654660|ref|YP_003534557.1|	-	0.13	12.3	0.0	0.22	11.6	0.0	1.3	1	0	0	1	1	1	0	Integrase	core	domain
GATase	PF00117.23	gi|292654661|ref|YP_003534558.1|	-	6.3e-14	51.8	0.0	7.9e-14	51.5	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292654661|ref|YP_003534558.1|	-	4.2e-08	32.9	0.2	9.7e-07	28.4	0.1	2.5	1	1	0	1	1	1	1	Peptidase	C26
DUF91	PF01939.11	gi|292654662|ref|YP_003534559.1|	-	2.1e-69	233.1	0.0	2.6e-69	232.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
PDDEXK_4	PF14281.1	gi|292654662|ref|YP_003534559.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
Pyridox_ox_2	PF12900.2	gi|292654663|ref|YP_003534560.1|	-	3.8e-16	59.2	0.0	4.3e-16	59.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|292654663|ref|YP_003534560.1|	-	3.2e-06	27.0	0.0	4.5e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
HTH_20	PF12840.2	gi|292654664|ref|YP_003534561.1|	-	6.2e-09	35.5	1.1	1.3e-08	34.5	0.8	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292654664|ref|YP_003534561.1|	-	0.0031	17.0	0.1	0.0063	16.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FUR	PF01475.14	gi|292654664|ref|YP_003534561.1|	-	0.014	15.3	0.0	0.02	14.8	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_23	PF13384.1	gi|292654664|ref|YP_003534561.1|	-	0.02	14.5	0.0	0.045	13.4	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.2	gi|292654664|ref|YP_003534561.1|	-	0.053	13.1	0.3	0.1	12.2	0.2	1.5	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|292654664|ref|YP_003534561.1|	-	0.091	12.2	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Zn-ribbon_8	PF09723.5	gi|292654665|ref|YP_003534562.1|	-	1.7e-06	27.8	0.6	2.7e-06	27.2	0.1	1.5	1	1	1	2	2	2	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654665|ref|YP_003534562.1|	-	0.0022	17.2	3.7	0.39	10.0	0.4	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|292654665|ref|YP_003534562.1|	-	0.0026	17.2	2.5	0.52	9.8	0.3	2.3	2	1	0	2	2	2	2	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|292654665|ref|YP_003534562.1|	-	0.0057	16.2	0.1	0.011	15.4	0.1	1.4	1	1	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ribbon_3	PF13248.1	gi|292654665|ref|YP_003534562.1|	-	0.008	15.3	1.7	0.39	9.9	0.1	2.4	3	0	0	3	3	3	2	zinc-ribbon	domain
DZR	PF12773.2	gi|292654665|ref|YP_003534562.1|	-	0.011	15.5	2.0	0.031	14.0	1.4	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|292654665|ref|YP_003534562.1|	-	0.015	15.0	2.1	1.4	8.6	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-Di19	PF05605.7	gi|292654665|ref|YP_003534562.1|	-	0.015	15.4	0.6	5.2	7.2	0.1	2.2	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-dskA_traR	PF01258.12	gi|292654665|ref|YP_003534562.1|	-	0.023	14.4	2.3	0.47	10.2	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
cEGF	PF12662.2	gi|292654665|ref|YP_003534562.1|	-	0.061	12.9	0.8	0.088	12.4	0.6	1.4	1	0	0	1	1	1	0	Complement	Clr-like	EGF-like
Auto_anti-p27	PF06677.7	gi|292654665|ref|YP_003534562.1|	-	0.062	13.0	0.9	1	9.1	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HypA	PF01155.14	gi|292654665|ref|YP_003534562.1|	-	0.063	12.9	0.2	0.071	12.8	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|292654665|ref|YP_003534562.1|	-	0.085	12.6	0.8	6.3	6.6	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ISL3	PF14690.1	gi|292654665|ref|YP_003534562.1|	-	0.13	12.3	0.6	12	5.9	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CpXC	PF14353.1	gi|292654665|ref|YP_003534562.1|	-	0.14	12.0	0.7	1.5	8.7	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-C2H2	PF00096.21	gi|292654665|ref|YP_003534562.1|	-	0.15	12.4	1.2	4.3	7.8	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
RRN7	PF11781.3	gi|292654665|ref|YP_003534562.1|	-	0.19	11.2	1.6	0.83	9.2	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF329	PF03884.9	gi|292654665|ref|YP_003534562.1|	-	0.24	10.9	2.8	0.7	9.4	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
DUF2072	PF09845.4	gi|292654665|ref|YP_003534562.1|	-	0.24	11.3	1.1	0.3	11.0	0.8	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
zf-RING_3	PF14369.1	gi|292654665|ref|YP_003534562.1|	-	0.29	11.1	0.1	0.29	11.1	0.1	2.5	2	1	1	3	3	3	0	zinc-finger
Prok-RING_4	PF14447.1	gi|292654665|ref|YP_003534562.1|	-	0.3	10.6	4.6	0.15	11.6	1.4	1.8	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-Mss51	PF13824.1	gi|292654665|ref|YP_003534562.1|	-	0.38	10.6	2.3	15	5.5	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TerY-C	PF15616.1	gi|292654665|ref|YP_003534562.1|	-	0.92	9.4	4.1	11	5.8	0.5	1.9	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
UPF0547	PF10571.4	gi|292654665|ref|YP_003534562.1|	-	1.7	8.3	0.1	1.7	8.3	0.1	2.4	3	0	0	3	3	2	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|292654665|ref|YP_003534562.1|	-	1.7	8.1	4.4	17	5.0	0.3	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-H2C2_2	PF13465.1	gi|292654665|ref|YP_003534562.1|	-	2.2	8.7	4.0	3.4	8.1	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.5	gi|292654666|ref|YP_003534563.1|	-	0.0013	18.6	0.2	0.0015	18.4	0.1	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654666|ref|YP_003534563.1|	-	0.017	14.4	2.0	0.03	13.6	0.1	1.9	1	1	2	3	3	2	0	TFIIB	zinc-binding
zf-C3HC4_3	PF13920.1	gi|292654666|ref|YP_003534563.1|	-	0.033	13.8	0.3	0.047	13.3	0.2	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Gin	PF10764.4	gi|292654666|ref|YP_003534563.1|	-	0.058	13.1	0.3	0.93	9.2	0.0	2.0	2	0	0	2	2	2	0	Inhibitor	of	sigma-G	Gin
PhnA_Zn_Ribbon	PF08274.7	gi|292654666|ref|YP_003534563.1|	-	0.21	11.3	1.7	0.27	11.0	0.1	1.9	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-Di19	PF05605.7	gi|292654666|ref|YP_003534563.1|	-	0.57	10.3	2.5	19	5.5	1.8	2.0	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Pyridox_ox_2	PF12900.2	gi|292654667|ref|YP_003534564.1|	-	2.8e-13	49.9	0.0	3.2e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|292654667|ref|YP_003534564.1|	-	1.4e-08	34.6	0.0	1.9e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
HTH_10	PF04967.7	gi|292654668|ref|YP_003534565.1|	-	2.8e-19	68.4	0.1	4.2e-19	67.8	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|292654668|ref|YP_003534565.1|	-	0.0019	17.4	0.0	0.0036	16.5	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.2	gi|292654668|ref|YP_003534565.1|	-	0.0019	17.9	0.0	0.0038	17.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654668|ref|YP_003534565.1|	-	0.0064	16.1	0.0	0.016	14.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.14	gi|292654668|ref|YP_003534565.1|	-	0.016	14.5	0.2	0.098	11.9	0.1	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_27	PF13463.1	gi|292654668|ref|YP_003534565.1|	-	0.08	13.2	0.0	0.14	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|292654669|ref|YP_003534566.1|	-	1.9e-08	33.9	0.3	3e-08	33.3	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292654669|ref|YP_003534566.1|	-	3e-05	23.4	0.1	5.2e-05	22.7	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654669|ref|YP_003534566.1|	-	0.003	17.1	0.1	0.0062	16.1	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292654669|ref|YP_003534566.1|	-	0.0084	15.4	0.0	0.044	13.1	0.0	2.2	2	1	1	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292654669|ref|YP_003534566.1|	-	0.015	14.9	0.0	0.032	13.9	0.0	1.5	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF742	PF05331.6	gi|292654669|ref|YP_003534566.1|	-	0.015	14.8	0.1	0.019	14.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_5	PF01022.15	gi|292654669|ref|YP_003534566.1|	-	0.051	13.2	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CBM_2	PF00553.14	gi|292654670|ref|YP_003534567.1|	-	0.013	15.5	0.8	0.13	12.3	0.1	2.3	2	0	0	2	2	2	0	Cellulose	binding	domain
LPAM_1	PF08139.7	gi|292654670|ref|YP_003534567.1|	-	0.24	11.6	1.0	0.59	10.4	0.7	1.6	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
DUF2270	PF10028.4	gi|292654671|ref|YP_003534568.1|	-	5.3e-63	211.8	0.8	6.1e-63	211.6	0.5	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
TauE	PF01925.14	gi|292654671|ref|YP_003534568.1|	-	0.04	13.3	6.2	0.66	9.3	1.3	2.1	2	0	0	2	2	2	0	Sulfite	exporter	TauE/SafE
DUF368	PF04018.8	gi|292654671|ref|YP_003534568.1|	-	0.054	12.6	2.8	0.22	10.6	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF368)
DUF418	PF04235.7	gi|292654671|ref|YP_003534568.1|	-	0.074	12.7	2.2	0.11	12.1	0.1	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF418)
DUF2975	PF11188.3	gi|292654671|ref|YP_003534568.1|	-	0.1	12.3	2.4	0.16	11.7	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
Acyl_transf_3	PF01757.17	gi|292654671|ref|YP_003534568.1|	-	0.59	8.9	6.4	0.27	10.0	0.2	2.3	2	1	0	2	2	2	0	Acyltransferase	family
CSD	PF00313.17	gi|292654672|ref|YP_003534569.1|	-	9.7e-21	73.3	0.1	1.1e-20	73.1	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|292654672|ref|YP_003534569.1|	-	0.0014	18.2	0.2	0.0019	17.8	0.1	1.3	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|292654672|ref|YP_003534569.1|	-	0.024	14.1	2.9	0.033	13.6	2.0	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|292654672|ref|YP_003534569.1|	-	0.069	13.0	0.0	0.097	12.5	0.0	1.4	1	1	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
CSD	PF00313.17	gi|292654673|ref|YP_003534570.1|	-	4e-20	71.3	0.1	4.4e-20	71.2	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|292654673|ref|YP_003534570.1|	-	0.006	16.2	0.2	0.008	15.8	0.1	1.3	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|292654673|ref|YP_003534570.1|	-	0.025	14.0	2.9	0.033	13.6	2.0	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|292654673|ref|YP_003534570.1|	-	0.12	12.2	0.0	0.17	11.7	0.0	1.4	1	1	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
VanZ	PF04892.7	gi|292654675|ref|YP_003534572.1|	-	2e-08	34.2	0.2	3e-08	33.7	0.2	1.3	1	1	0	1	1	1	1	VanZ	like	family
DUF192	PF02643.10	gi|292654677|ref|YP_003534574.1|	-	2.7e-27	94.5	0.0	3.5e-27	94.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
Gmad2	PF10648.4	gi|292654677|ref|YP_003534574.1|	-	0.014	15.5	0.2	0.023	14.8	0.2	1.3	1	0	0	1	1	1	0	Immunoglobulin-like	domain	of	bacterial	spore	germination
ABC_membrane	PF00664.18	gi|292654679|ref|YP_003534576.1|	-	3.8e-38	131.4	2.2	5.4e-38	130.9	1.5	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.22	gi|292654679|ref|YP_003534576.1|	-	1.3e-37	129.1	0.0	2.2e-37	128.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292654679|ref|YP_003534576.1|	-	0.00021	21.3	0.0	0.0047	16.9	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
ABC_membrane_3	PF13748.1	gi|292654679|ref|YP_003534576.1|	-	0.00022	20.3	0.8	0.21	10.6	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter	transmembrane	region
AAA_17	PF13207.1	gi|292654679|ref|YP_003534576.1|	-	0.0013	19.5	0.1	0.0045	17.7	0.1	2.1	2	1	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|292654679|ref|YP_003534576.1|	-	0.0017	18.4	0.0	0.0034	17.3	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|292654679|ref|YP_003534576.1|	-	0.0018	17.5	0.7	0.021	14.0	0.0	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|292654679|ref|YP_003534576.1|	-	0.0027	16.9	0.0	0.0046	16.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|292654679|ref|YP_003534576.1|	-	0.0039	17.3	0.1	0.017	15.2	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|292654679|ref|YP_003534576.1|	-	0.004	16.6	0.0	0.017	14.6	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|292654679|ref|YP_003534576.1|	-	0.018	15.3	0.0	0.044	14.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|292654679|ref|YP_003534576.1|	-	0.021	13.4	0.2	0.021	13.4	0.2	1.6	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Zeta_toxin	PF06414.7	gi|292654679|ref|YP_003534576.1|	-	0.022	13.8	0.0	0.043	12.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
DUF2107	PF09880.4	gi|292654679|ref|YP_003534576.1|	-	0.028	14.2	0.3	0.07	13.0	0.2	1.7	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2107)
AAA_14	PF13173.1	gi|292654679|ref|YP_003534576.1|	-	0.08	12.8	0.0	0.23	11.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|292654679|ref|YP_003534576.1|	-	0.087	12.4	0.1	0.5	9.9	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|292654679|ref|YP_003534576.1|	-	0.12	12.6	0.0	0.63	10.2	0.0	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|292654679|ref|YP_003534576.1|	-	0.21	11.9	0.1	0.38	11.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
Creatininase	PF02633.9	gi|292654680|ref|YP_003534577.1|	-	2.1e-71	239.8	1.3	2.3e-71	239.6	0.9	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
HeLo	PF14479.1	gi|292654681|ref|YP_003534578.1|	-	0.0033	17.1	0.0	0.0037	17.0	0.0	1.2	1	0	0	1	1	1	1	Prion-inhibition	and	propagation
DUF883	PF05957.8	gi|292654681|ref|YP_003534578.1|	-	0.025	14.9	3.6	4.4	7.7	0.0	2.5	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
AATF-Che1	PF13339.1	gi|292654681|ref|YP_003534578.1|	-	0.078	13.1	0.8	0.18	11.9	0.3	1.7	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
DUF770	PF05591.7	gi|292654681|ref|YP_003534578.1|	-	0.078	12.5	0.1	0.097	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF770)
DUF4611	PF15387.1	gi|292654681|ref|YP_003534578.1|	-	0.19	11.8	9.1	0.18	11.9	4.1	2.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4611)
Ribosomal_60s	PF00428.14	gi|292654681|ref|YP_003534578.1|	-	2.6	8.4	12.3	0.83	10.1	6.2	1.9	2	0	0	2	2	2	0	60s	Acidic	ribosomal	protein
NUDIX	PF00293.23	gi|292654682|ref|YP_003534579.1|	-	1.5e-16	60.2	0.5	2.1e-16	59.8	0.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
DUF372	PF04036.7	gi|292654683|ref|YP_003534580.1|	-	1.3e-21	75.8	0.1	1.9e-21	75.2	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF372)
DUF381	PF04038.7	gi|292654683|ref|YP_003534580.1|	-	3.2e-20	71.9	0.8	4.1e-20	71.5	0.6	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF381)
GPW_gp25	PF04965.9	gi|292654683|ref|YP_003534580.1|	-	0.023	14.2	0.0	0.03	13.8	0.0	1.3	1	1	0	1	1	1	0	Gene	25-like	lysozyme
Epimerase	PF01370.16	gi|292654684|ref|YP_003534581.1|	-	1.9e-21	76.5	0.0	2.6e-21	76.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292654684|ref|YP_003534581.1|	-	1.4e-16	60.0	0.0	1.9e-16	59.6	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|292654684|ref|YP_003534581.1|	-	1.5e-13	50.3	0.0	2e-10	40.0	0.0	2.2	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|292654684|ref|YP_003534581.1|	-	2e-12	46.6	0.4	3.5e-12	45.7	0.0	1.5	2	0	0	2	2	2	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|292654684|ref|YP_003534581.1|	-	1.6e-11	44.5	0.0	2.1e-11	44.1	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|292654684|ref|YP_003534581.1|	-	0.00012	21.4	0.0	0.00016	20.9	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.20	gi|292654684|ref|YP_003534581.1|	-	0.00013	21.9	0.0	0.00025	21.0	0.0	1.5	1	0	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|292654684|ref|YP_003534581.1|	-	0.00062	18.7	0.1	0.0048	15.8	0.1	2.0	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
Saccharop_dh	PF03435.13	gi|292654684|ref|YP_003534581.1|	-	0.011	14.7	0.0	0.015	14.3	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
KR	PF08659.5	gi|292654684|ref|YP_003534581.1|	-	0.043	13.4	1.7	0.14	11.7	1.1	1.9	1	1	0	1	1	1	0	KR	domain
DUF998	PF06197.8	gi|292654685|ref|YP_003534582.1|	-	0.0057	15.9	17.4	0.04	13.2	11.2	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF998)
DUF2127	PF09900.4	gi|292654685|ref|YP_003534582.1|	-	1.2	9.1	7.6	3.6	7.6	5.1	1.9	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2127)
HTH_10	PF04967.7	gi|292654686|ref|YP_003534583.1|	-	5.4e-18	64.3	0.0	9.4e-18	63.5	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|292654686|ref|YP_003534583.1|	-	3.9e-05	22.8	0.1	7.5e-05	21.9	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.14	gi|292654686|ref|YP_003534583.1|	-	0.0003	20.0	0.1	0.0052	16.0	0.1	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
LexA_DNA_bind	PF01726.11	gi|292654686|ref|YP_003534583.1|	-	0.00048	19.6	0.1	0.0013	18.2	0.1	1.7	1	1	0	1	1	1	1	LexA	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|292654686|ref|YP_003534583.1|	-	0.00098	18.5	0.1	0.023	14.1	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_5	PF01022.15	gi|292654686|ref|YP_003534583.1|	-	0.0015	18.1	0.0	0.0033	17.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|292654686|ref|YP_003534583.1|	-	0.0018	17.6	0.0	0.0035	16.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_38	PF13936.1	gi|292654686|ref|YP_003534583.1|	-	0.002	17.6	0.0	0.0041	16.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654686|ref|YP_003534583.1|	-	0.0062	16.1	0.1	0.013	15.1	0.1	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.14	gi|292654686|ref|YP_003534583.1|	-	0.015	15.1	0.0	0.03	14.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HrcA_DNA-bdg	PF03444.10	gi|292654686|ref|YP_003534583.1|	-	0.024	14.0	0.0	0.043	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_1	PF00126.22	gi|292654686|ref|YP_003534583.1|	-	0.047	13.4	0.3	1.5	8.6	0.1	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TetR_N	PF00440.18	gi|292654686|ref|YP_003534583.1|	-	0.096	12.3	0.7	0.26	10.9	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
DUF309	PF03745.9	gi|292654687|ref|YP_003534584.1|	-	2.2e-14	52.6	0.4	3.9e-14	51.8	0.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
FYVE_2	PF02318.11	gi|292654688|ref|YP_003534585.1|	-	0.03	14.2	0.1	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Cytochrom_c3_2	PF14537.1	gi|292654688|ref|YP_003534585.1|	-	0.1	12.9	0.1	0.12	12.7	0.1	1.2	1	0	0	1	1	1	0	Cytochrome	c3
zf-dskA_traR	PF01258.12	gi|292654688|ref|YP_003534585.1|	-	0.16	11.6	3.4	1.4	8.7	2.4	2.1	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Cytochrome_C7	PF14522.1	gi|292654688|ref|YP_003534585.1|	-	0.21	11.2	1.1	0.33	10.6	0.8	1.5	1	1	0	1	1	1	0	Cytochrome	c7
Lipase_GDSL_2	PF13472.1	gi|292654689|ref|YP_003534586.1|	-	4.4e-20	72.5	1.1	5.3e-20	72.3	0.7	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.17	gi|292654689|ref|YP_003534586.1|	-	7.8e-10	38.9	0.0	9.9e-10	38.6	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
DUF3325	PF11804.3	gi|292654690|ref|YP_003534587.1|	-	0.028	14.3	0.3	0.044	13.7	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
Myco_19_kDa	PF05481.7	gi|292654690|ref|YP_003534587.1|	-	2.2	8.0	14.2	2.2	8.1	9.0	1.6	1	1	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
tRNA_anti-codon	PF01336.20	gi|292654691|ref|YP_003534588.1|	-	4e-32	109.8	7.2	4.7e-13	48.7	0.4	4.0	3	1	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
SSB	PF00436.20	gi|292654691|ref|YP_003534588.1|	-	0.00025	20.8	0.2	0.33	10.8	0.0	3.2	4	0	0	4	4	4	2	Single-strand	binding	protein	family
Rep_fac-A_C	PF08646.5	gi|292654691|ref|YP_003534588.1|	-	0.0018	17.9	0.0	3	7.5	0.0	3.2	3	0	0	3	3	3	1	Replication	factor-A	C	terminal	domain
DUF4539	PF15072.1	gi|292654691|ref|YP_003534588.1|	-	0.016	14.9	0.1	0.74	9.5	0.0	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4539)
HABP4_PAI-RBP1	PF04774.10	gi|292654691|ref|YP_003534588.1|	-	0.078	13.4	1.5	0.53	10.8	0.1	2.6	2	0	0	2	2	2	0	Hyaluronan	/	mRNA	binding	family
CBFD_NFYB_HMF	PF00808.18	gi|292654692|ref|YP_003534589.1|	-	4.6e-25	87.4	0.5	4.8e-14	52.1	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|292654692|ref|YP_003534589.1|	-	2.5e-16	59.5	0.5	5.3e-10	39.2	0.1	2.0	2	0	0	2	2	2	2	Core	histone	H2A/H2B/H3/H4
TFIID-18kDa	PF02269.11	gi|292654692|ref|YP_003534589.1|	-	0.00094	18.9	0.3	0.026	14.3	0.0	2.2	2	0	0	2	2	2	1	Transcription	initiation	factor	IID,	18kD	subunit
TFIID_20kDa	PF03847.8	gi|292654692|ref|YP_003534589.1|	-	0.0067	16.6	0.4	0.016	15.4	0.3	1.6	1	0	0	1	1	1	1	Transcription	initiation	factor	TFIID	subunit	A
CENP-S	PF15630.1	gi|292654692|ref|YP_003534589.1|	-	0.016	15.3	1.5	0.023	14.8	0.3	1.7	2	0	0	2	2	2	0	Kinetochore	component	CENP-S
DUF1931	PF09123.6	gi|292654692|ref|YP_003534589.1|	-	0.022	14.7	0.5	0.39	10.6	0.3	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1931)
TAF	PF02969.12	gi|292654692|ref|YP_003534589.1|	-	0.06	13.3	2.5	0.81	9.6	0.2	2.4	2	1	0	2	2	2	0	TATA	box	binding	protein	associated	factor	(TAF)
Hist_deacetyl	PF00850.14	gi|292654693|ref|YP_003534590.1|	-	1.2e-84	284.3	0.1	1.4e-84	284.0	0.1	1.0	1	0	0	1	1	1	1	Histone	deacetylase	domain
Lipase_GDSL_2	PF13472.1	gi|292654693|ref|YP_003534590.1|	-	0.0041	17.2	1.3	0.2	11.7	0.1	2.8	2	1	1	3	3	3	1	GDSL-like	Lipase/Acylhydrolase	family
tRNA_NucTransf2	PF09249.6	gi|292654694|ref|YP_003534591.1|	-	2.9e-39	133.4	0.0	4.8e-39	132.7	0.0	1.3	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|292654694|ref|YP_003534591.1|	-	1.8e-12	47.4	0.1	4.2e-12	46.2	0.1	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF629	PF04780.7	gi|292654696|ref|YP_003534593.1|	-	0.11	10.9	0.3	0.14	10.6	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF629)
SBP_bac_8	PF13416.1	gi|292654699|ref|YP_003534596.1|	-	5.5e-20	72.2	5.6	7.2e-20	71.8	3.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292654699|ref|YP_003534596.1|	-	7.7e-13	48.8	5.6	1.1e-12	48.3	3.9	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|292654699|ref|YP_003534596.1|	-	0.008	15.8	0.2	0.054	13.1	0.1	2.1	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|292654699|ref|YP_003534596.1|	-	0.34	11.0	4.7	1.4	9.1	3.2	2.1	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|292654700|ref|YP_003534597.1|	-	1.5e-19	70.2	17.1	1.5e-19	70.2	11.8	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|292654701|ref|YP_003534598.1|	-	7.4e-10	38.6	19.4	1.5e-09	37.6	10.9	2.6	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3784	PF12650.2	gi|292654701|ref|YP_003534598.1|	-	0.13	12.1	7.1	0.14	12.0	0.0	3.1	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF3784)
Herpes_LMP1	PF05297.6	gi|292654701|ref|YP_003534598.1|	-	0.38	9.6	2.6	0.52	9.1	1.8	1.3	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
ABC_tran	PF00005.22	gi|292654702|ref|YP_003534599.1|	-	1e-30	106.8	0.0	1.6e-30	106.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292654702|ref|YP_003534599.1|	-	7.9e-09	35.8	0.0	0.00025	21.0	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|292654702|ref|YP_003534599.1|	-	1e-06	28.6	0.1	4.1e-06	26.6	0.0	2.1	2	0	0	2	2	2	1	TOBE	domain
AAA_22	PF13401.1	gi|292654702|ref|YP_003534599.1|	-	0.00082	19.5	0.3	0.0031	17.6	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292654702|ref|YP_003534599.1|	-	0.001	18.3	0.1	0.005	16.0	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|292654702|ref|YP_003534599.1|	-	0.0013	17.9	0.0	0.0022	17.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|292654702|ref|YP_003534599.1|	-	0.0021	17.1	0.0	0.017	14.1	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|292654702|ref|YP_003534599.1|	-	0.0026	17.7	0.1	0.0068	16.4	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292654702|ref|YP_003534599.1|	-	0.0035	16.8	0.1	0.023	14.1	0.0	2.0	2	0	0	2	2	2	1	AAA-like	domain
TOBE	PF03459.12	gi|292654702|ref|YP_003534599.1|	-	0.0035	17.4	0.0	0.0099	15.9	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
AAA_33	PF13671.1	gi|292654702|ref|YP_003534599.1|	-	0.004	17.0	0.1	0.011	15.6	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.10	gi|292654702|ref|YP_003534599.1|	-	0.0054	15.4	0.0	0.0074	15.0	0.0	1.1	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA	PF00004.24	gi|292654702|ref|YP_003534599.1|	-	0.0085	16.2	0.0	0.036	14.2	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|292654702|ref|YP_003534599.1|	-	0.011	16.5	0.1	0.021	15.6	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|292654702|ref|YP_003534599.1|	-	0.014	14.8	0.0	0.22	10.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|292654702|ref|YP_003534599.1|	-	0.018	14.5	0.0	0.036	13.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|292654702|ref|YP_003534599.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|292654702|ref|YP_003534599.1|	-	0.12	12.6	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|292654702|ref|YP_003534599.1|	-	0.15	12.5	0.0	0.4	11.1	0.0	1.7	1	0	0	1	1	1	0	Miro-like	protein
NACHT	PF05729.7	gi|292654702|ref|YP_003534599.1|	-	0.16	11.6	0.1	0.31	10.7	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
RNA_helicase	PF00910.17	gi|292654702|ref|YP_003534599.1|	-	0.24	11.5	0.6	0.67	10.1	0.0	2.1	3	0	0	3	3	1	0	RNA	helicase
DUF4013	PF13197.1	gi|292654703|ref|YP_003534600.1|	-	5.2e-11	42.1	17.9	1e-10	41.1	12.4	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4013)
Ferritin	PF00210.19	gi|292654704|ref|YP_003534601.1|	-	1.5e-27	96.1	7.5	1.7e-27	95.9	5.2	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
SIMPL	PF04402.9	gi|292654704|ref|YP_003534601.1|	-	0.014	15.2	0.0	0.019	14.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
DUF2203	PF09969.4	gi|292654704|ref|YP_003534601.1|	-	0.039	14.1	0.4	0.071	13.3	0.2	1.5	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF892	PF05974.7	gi|292654704|ref|YP_003534601.1|	-	0.041	13.6	6.5	0.11	12.3	4.5	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
DUF2959	PF11172.3	gi|292654704|ref|YP_003534601.1|	-	0.061	13.0	0.1	0.091	12.5	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2959)
DUF2067	PF09840.4	gi|292654704|ref|YP_003534601.1|	-	0.071	12.6	0.1	0.095	12.1	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
DUF1451	PF07295.6	gi|292654704|ref|YP_003534601.1|	-	0.39	10.4	4.6	3.2	7.5	0.5	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1451)
FAM104	PF15434.1	gi|292654705|ref|YP_003534602.1|	-	0.034	14.3	0.5	0.037	14.2	0.3	1.1	1	0	0	1	1	1	0	Family	104
Fe_dep_repress	PF01325.14	gi|292654706|ref|YP_003534603.1|	-	4.3e-09	36.1	0.0	7.8e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|292654706|ref|YP_003534603.1|	-	5.6e-05	22.7	0.0	9.7e-05	21.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.10	gi|292654706|ref|YP_003534603.1|	-	0.00018	21.1	0.0	0.00026	20.6	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_27	PF13463.1	gi|292654706|ref|YP_003534603.1|	-	0.0011	19.2	0.0	0.002	18.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|292654706|ref|YP_003534603.1|	-	0.017	14.6	0.0	0.042	13.4	0.0	1.6	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_12	PF08461.5	gi|292654706|ref|YP_003534603.1|	-	0.13	11.9	0.0	0.26	11.0	0.0	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_24	PF13412.1	gi|292654706|ref|YP_003534603.1|	-	0.14	11.5	0.0	0.29	10.5	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
RsbRD_N	PF14361.1	gi|292654707|ref|YP_003534604.1|	-	9	6.8	7.0	20	5.7	0.3	3.5	1	1	0	3	3	3	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
Bax1-I	PF01027.15	gi|292654708|ref|YP_003534605.1|	-	9.9	5.7	10.4	25	4.3	7.2	1.7	1	1	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
Aconitase	PF00330.15	gi|292654709|ref|YP_003534606.1|	-	4.5e-133	444.1	0.0	5.6e-93	311.9	0.0	2.1	2	0	0	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|292654709|ref|YP_003534606.1|	-	1.4e-38	131.9	0.0	2.4e-38	131.2	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF836	PF05768.9	gi|292654711|ref|YP_003534608.1|	-	3.3e-15	56.1	0.0	3.7e-15	55.9	0.0	1.0	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.19	gi|292654711|ref|YP_003534608.1|	-	8.9e-07	28.8	0.2	1.4e-06	28.1	0.2	1.3	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_3	PF13192.1	gi|292654711|ref|YP_003534608.1|	-	9.1e-07	28.6	0.1	1.1e-06	28.3	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|292654711|ref|YP_003534608.1|	-	0.018	15.2	0.0	0.022	14.9	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|292654711|ref|YP_003534608.1|	-	0.078	12.6	0.0	0.095	12.3	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
DUF3022	PF11226.3	gi|292654711|ref|YP_003534608.1|	-	0.2	11.5	1.8	0.3	10.9	1.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3022)
Sugar_tr	PF00083.19	gi|292654712|ref|YP_003534609.1|	-	1.3e-127	426.1	23.2	1.4e-127	425.9	16.1	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|292654712|ref|YP_003534609.1|	-	1e-36	126.3	51.4	8.2e-26	90.5	10.8	2.0	1	1	0	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.8	gi|292654712|ref|YP_003534609.1|	-	2.5e-09	35.8	0.8	2.5e-09	35.8	0.6	2.1	2	0	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
Rick_17kDa_Anti	PF05433.10	gi|292654712|ref|YP_003534609.1|	-	0.003	17.2	5.4	0.003	17.2	3.7	2.7	2	0	0	2	2	2	1	Glycine	zipper	2TM	domain
Gly-zipper_YMGG	PF13441.1	gi|292654712|ref|YP_003534609.1|	-	0.32	10.5	8.4	0.11	12.0	2.9	2.5	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
VirB8	PF04335.8	gi|292654712|ref|YP_003534609.1|	-	1.2	8.6	0.0	1.2	8.6	0.0	2.7	3	1	1	4	4	4	0	VirB8	protein
DUF2275	PF10039.4	gi|292654713|ref|YP_003534610.1|	-	0.29	11.0	1.9	0.42	10.4	0.9	1.5	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2275)
Zn_Tnp_IS1595	PF12760.2	gi|292654714|ref|YP_003534611.1|	-	0.00018	21.2	1.2	0.00022	20.9	0.8	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292654714|ref|YP_003534611.1|	-	0.00079	19.3	1.9	0.41	10.6	0.1	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|292654714|ref|YP_003534611.1|	-	0.00088	18.6	0.6	0.26	10.7	0.1	2.1	2	0	0	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
GATA	PF00320.22	gi|292654714|ref|YP_003534611.1|	-	0.0013	17.9	0.5	0.048	13.0	0.0	2.2	2	0	0	2	2	2	1	GATA	zinc	finger
zf-HYPF	PF07503.7	gi|292654714|ref|YP_003534611.1|	-	0.0056	16.0	1.5	0.19	11.1	0.1	2.2	2	0	0	2	2	2	1	HypF	finger
DZR	PF12773.2	gi|292654714|ref|YP_003534611.1|	-	0.0088	15.8	0.5	0.016	15.0	0.4	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
TFIIS_C	PF01096.13	gi|292654714|ref|YP_003534611.1|	-	0.02	14.5	0.3	1	9.0	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Prok-RING_1	PF14446.1	gi|292654714|ref|YP_003534611.1|	-	0.023	14.3	0.7	3	7.6	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
TF_Zn_Ribbon	PF08271.7	gi|292654714|ref|YP_003534611.1|	-	0.035	13.4	0.9	3	7.2	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
C1_1	PF00130.17	gi|292654714|ref|YP_003534611.1|	-	0.041	13.6	0.1	0.068	12.9	0.1	1.4	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-NADH-PPase	PF09297.6	gi|292654714|ref|YP_003534611.1|	-	0.043	13.3	2.8	1.2	8.7	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
PHF5	PF03660.9	gi|292654714|ref|YP_003534611.1|	-	0.045	13.8	0.0	0.049	13.6	0.0	1.0	1	0	0	1	1	1	0	PHF5-like	protein
HypA	PF01155.14	gi|292654714|ref|YP_003534611.1|	-	0.058	13.0	0.3	0.064	12.9	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Nudix_N_2	PF14803.1	gi|292654714|ref|YP_003534611.1|	-	0.071	12.8	1.9	4.5	7.0	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
RNHCP	PF12647.2	gi|292654714|ref|YP_003534611.1|	-	0.072	12.9	0.3	0.17	11.7	0.2	1.5	1	1	0	1	1	1	0	RNHCP	domain
PhnJ	PF06007.6	gi|292654714|ref|YP_003534611.1|	-	0.087	11.5	0.0	0.088	11.5	0.0	1.0	1	0	0	1	1	1	0	Phosphonate	metabolism	protein	PhnJ
Zn_ribbon_recom	PF13408.1	gi|292654714|ref|YP_003534611.1|	-	0.11	12.7	4.0	0.21	11.8	2.8	1.4	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-IS66	PF13005.2	gi|292654714|ref|YP_003534611.1|	-	0.11	12.4	1.2	8.5	6.4	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DUF3268	PF11672.3	gi|292654714|ref|YP_003534611.1|	-	0.13	12.3	0.0	0.15	12.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3268)
zf-ribbon_3	PF13248.1	gi|292654714|ref|YP_003534611.1|	-	0.13	11.5	0.9	4.3	6.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-trcl	PF13451.1	gi|292654714|ref|YP_003534611.1|	-	0.14	11.8	0.8	4.2	7.0	0.0	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-C2H2	PF00096.21	gi|292654714|ref|YP_003534611.1|	-	0.15	12.4	3.4	5.3	7.5	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
PhnA_Zn_Ribbon	PF08274.7	gi|292654714|ref|YP_003534611.1|	-	0.15	11.8	0.5	10	5.9	0.0	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
ADK_lid	PF05191.9	gi|292654714|ref|YP_003534611.1|	-	0.19	11.4	2.5	0.69	9.6	0.2	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
RRN7	PF11781.3	gi|292654714|ref|YP_003534611.1|	-	0.23	10.9	6.4	2.7	7.5	0.9	2.1	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
OrfB_Zn_ribbon	PF07282.6	gi|292654714|ref|YP_003534611.1|	-	0.3	10.7	2.9	1.4	8.6	2.0	1.8	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Ogr_Delta	PF04606.7	gi|292654714|ref|YP_003534611.1|	-	0.32	10.6	2.7	1	9.0	1.9	1.7	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-C2H2_6	PF13912.1	gi|292654714|ref|YP_003534611.1|	-	0.39	10.6	2.9	5.1	7.1	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.1	gi|292654714|ref|YP_003534611.1|	-	0.69	9.9	4.0	11	6.1	0.3	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF35_N	PF12172.3	gi|292654714|ref|YP_003534611.1|	-	4.8	7.2	9.5	7.3e+02	0.2	6.3	2.3	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF3117	PF11314.3	gi|292654715|ref|YP_003534612.1|	-	0.082	12.4	0.0	1.5	8.4	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3117)
Na_H_antiporter	PF03553.9	gi|292654716|ref|YP_003534613.1|	-	8.2e-55	185.9	43.1	3.4e-50	170.8	14.8	2.0	1	1	1	2	2	2	2	Na+/H+	antiporter	family
PfkB	PF00294.19	gi|292654717|ref|YP_003534614.1|	-	2.3e-55	187.8	1.0	2.6e-55	187.7	0.7	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Adeno_E3	PF06040.6	gi|292654718|ref|YP_003534615.1|	-	0.035	14.0	0.1	0.057	13.3	0.1	1.3	1	0	0	1	1	1	0	Adenovirus	E3	protein
MutL_C	PF08676.6	gi|292654719|ref|YP_003534616.1|	-	2.8e-36	124.2	0.0	4.1e-36	123.7	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.14	gi|292654719|ref|YP_003534616.1|	-	3.5e-36	123.2	0.0	5.2e-36	122.7	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.1	gi|292654719|ref|YP_003534616.1|	-	7.3e-11	41.8	0.0	1.5e-10	40.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|292654719|ref|YP_003534616.1|	-	3.6e-09	36.3	0.2	8.3e-09	35.1	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MutS_V	PF00488.16	gi|292654720|ref|YP_003534617.1|	-	7.5e-100	333.1	0.0	1.2e-99	332.4	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|292654720|ref|YP_003534617.1|	-	2.9e-45	154.5	2.6	7.3e-43	146.7	2.7	2.3	2	0	0	2	2	2	1	MutS	domain	III
MutS_I	PF01624.15	gi|292654720|ref|YP_003534617.1|	-	4.3e-28	97.5	0.0	9e-28	96.5	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.13	gi|292654720|ref|YP_003534617.1|	-	5e-24	84.2	0.8	9.8e-24	83.3	0.5	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|292654720|ref|YP_003534617.1|	-	1e-21	77.4	0.0	3.2e-21	75.8	0.0	1.9	1	0	0	1	1	1	1	MutS	domain	II
AAA_29	PF13555.1	gi|292654720|ref|YP_003534617.1|	-	0.025	14.0	0.0	0.057	12.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
FbpA	PF05833.6	gi|292654720|ref|YP_003534617.1|	-	0.027	13.0	0.4	0.044	12.3	0.3	1.2	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
AAA_14	PF13173.1	gi|292654720|ref|YP_003534617.1|	-	0.14	12.1	0.0	0.6	10.0	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|292654720|ref|YP_003534617.1|	-	0.15	12.4	0.1	2.9	8.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Herpes_UL6	PF01763.11	gi|292654720|ref|YP_003534617.1|	-	0.22	9.6	0.2	0.33	9.0	0.1	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
AAA_22	PF13401.1	gi|292654720|ref|YP_003534617.1|	-	0.34	11.0	2.0	1.3	9.1	0.0	2.8	2	2	0	2	2	2	0	AAA	domain
Peripla_BP_6	PF13458.1	gi|292654721|ref|YP_003534618.1|	-	1.3e-32	113.4	12.3	1.8e-32	113.0	8.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|292654721|ref|YP_003534618.1|	-	6e-26	91.0	0.0	7.5e-26	90.7	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|292654721|ref|YP_003534618.1|	-	2.2e-07	29.9	0.1	1.8e-06	26.9	0.0	2.3	3	0	0	3	3	3	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|292654721|ref|YP_003534618.1|	-	0.0067	16.3	1.3	0.0067	16.3	0.9	2.7	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MCPsignal	PF00015.16	gi|292654722|ref|YP_003534619.1|	-	7.4e-53	179.2	60.7	3.3e-52	177.1	22.8	3.4	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|292654722|ref|YP_003534619.1|	-	1.8e-10	40.8	8.3	2.2e-08	34.1	0.2	5.5	6	1	2	8	8	7	2	HAMP	domain
Laminin_II	PF06009.7	gi|292654722|ref|YP_003534619.1|	-	0.015	15.0	35.8	0.023	14.4	3.0	4.7	3	2	2	5	5	5	0	Laminin	Domain	II
Caa3_CtaG	PF09678.5	gi|292654722|ref|YP_003534619.1|	-	0.052	12.4	0.2	4.4	6.1	0.0	2.2	2	0	0	2	2	2	0	Cytochrome	c	oxidase	caa3	assembly	factor	(Caa3_CtaG)
DUF2450	PF10475.4	gi|292654722|ref|YP_003534619.1|	-	0.34	9.7	6.6	0.17	10.7	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
NPV_P10	PF05531.7	gi|292654722|ref|YP_003534619.1|	-	1.3	9.2	17.1	0.079	13.2	1.4	4.9	2	2	2	4	4	4	0	Nucleopolyhedrovirus	P10	protein
DUF2390	PF09523.5	gi|292654722|ref|YP_003534619.1|	-	3.1	8.0	7.2	29	4.9	2.2	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2390)
IncA	PF04156.9	gi|292654722|ref|YP_003534619.1|	-	5	6.6	24.7	12	5.4	6.4	4.5	2	1	1	3	3	3	0	IncA	protein
Mod_r	PF07200.8	gi|292654722|ref|YP_003534619.1|	-	7.9	6.3	18.6	3.1	7.7	0.1	3.9	2	2	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF725	PF05267.7	gi|292654722|ref|YP_003534619.1|	-	8.2	6.3	15.5	2.8	7.8	0.7	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF725)
BLOC1_2	PF10046.4	gi|292654722|ref|YP_003534619.1|	-	9.8	6.3	24.3	12	6.1	0.4	5.8	3	2	2	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
MCPsignal	PF00015.16	gi|292654723|ref|YP_003534620.1|	-	2.7e-39	134.9	53.6	7.2e-38	130.2	24.1	2.7	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_9	PF13426.1	gi|292654723|ref|YP_003534620.1|	-	2.6e-11	43.8	0.0	8.7e-11	42.1	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|292654723|ref|YP_003534620.1|	-	3.8e-11	42.7	0.0	1.6e-10	40.7	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.5	gi|292654723|ref|YP_003534620.1|	-	3.1e-08	33.6	8.2	3.9e-08	33.2	0.5	4.0	2	2	2	4	4	4	1	PAS	fold
PAS_8	PF13188.1	gi|292654723|ref|YP_003534620.1|	-	0.012	15.5	0.0	0.033	14.0	0.0	1.7	1	0	0	1	1	1	0	PAS	domain
V_ATPase_I	PF01496.14	gi|292654723|ref|YP_003534620.1|	-	0.023	12.6	11.4	0.031	12.1	7.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
PAS_7	PF12860.2	gi|292654723|ref|YP_003534620.1|	-	0.028	14.4	0.0	0.028	14.4	0.0	4.1	2	2	2	4	4	4	0	PAS	fold
DUF489	PF04356.7	gi|292654723|ref|YP_003534620.1|	-	0.33	10.4	6.9	5.2	6.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
Sec5	PF15469.1	gi|292654723|ref|YP_003534620.1|	-	0.48	10.1	8.8	2.7	7.6	0.1	3.2	2	1	0	3	3	3	0	Exocyst	complex	component	Sec5
TMP_2	PF06791.8	gi|292654723|ref|YP_003534620.1|	-	0.71	9.4	37.2	0.28	10.7	7.2	3.6	1	1	2	3	3	3	0	Prophage	tail	length	tape	measure	protein
Mnd1	PF03962.10	gi|292654723|ref|YP_003534620.1|	-	0.73	9.4	14.4	3.3	7.3	3.5	2.4	2	0	0	2	2	2	0	Mnd1	family
Ferritin	PF00210.19	gi|292654723|ref|YP_003534620.1|	-	1.4	8.6	10.7	0.2	11.4	3.1	2.6	1	1	1	2	2	2	0	Ferritin-like	domain
DUF4559	PF15112.1	gi|292654723|ref|YP_003534620.1|	-	1.5	7.9	13.5	1.4	7.9	2.6	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4559)
Transpep_BrtH	PF14399.1	gi|292654723|ref|YP_003534620.1|	-	1.5	8.0	13.0	0.83	8.8	0.4	3.2	2	1	1	3	3	3	0	NlpC/p60-like	transpeptidase
DUF3450	PF11932.3	gi|292654723|ref|YP_003534620.1|	-	3.7	6.7	26.3	0.21	10.7	1.5	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
Fzo_mitofusin	PF04799.8	gi|292654723|ref|YP_003534620.1|	-	3.7	6.8	11.3	1.4	8.2	0.0	3.7	2	2	1	4	4	4	0	fzo-like	conserved	region
WXG100	PF06013.7	gi|292654723|ref|YP_003534620.1|	-	4.4	7.3	28.3	1.9	8.5	0.3	5.5	3	2	2	5	5	5	0	Proteins	of	100	residues	with	WXG
TPR_MLP1_2	PF07926.7	gi|292654723|ref|YP_003534620.1|	-	5.2	6.8	23.7	0.17	11.5	2.6	3.2	2	1	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
Laminin_II	PF06009.7	gi|292654723|ref|YP_003534620.1|	-	9.3	6.0	32.2	0.37	10.5	2.0	4.1	1	1	2	4	4	4	0	Laminin	Domain	II
ThiF	PF00899.16	gi|292654724|ref|YP_003534621.1|	-	1.1e-45	154.8	0.1	1.6e-45	154.3	0.1	1.3	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|292654724|ref|YP_003534621.1|	-	1.9e-33	113.9	0.1	2.8e-33	113.3	0.0	1.3	1	0	0	1	1	1	1	MoeZ/MoeB	domain
Saccharop_dh	PF03435.13	gi|292654724|ref|YP_003534621.1|	-	0.0007	18.6	0.3	0.001	18.1	0.2	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Shikimate_DH	PF01488.15	gi|292654724|ref|YP_003534621.1|	-	0.0053	16.8	0.4	0.0097	16.0	0.3	1.5	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TraS	PF10624.4	gi|292654724|ref|YP_003534621.1|	-	0.0095	15.5	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	1	Plasmid	conjugative	transfer	entry	exclusion	protein	TraS
NAD_binding_7	PF13241.1	gi|292654724|ref|YP_003534621.1|	-	0.091	13.0	0.1	0.16	12.2	0.1	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Rhodanese	PF00581.15	gi|292654725|ref|YP_003534622.1|	-	1.8e-14	54.0	0.0	2.8e-14	53.4	0.0	1.3	1	1	0	1	1	1	1	Rhodanese-like	domain
LRV	PF01816.12	gi|292654725|ref|YP_003534622.1|	-	0.039	14.1	0.9	0.24	11.6	0.1	2.3	2	0	0	2	2	2	0	Leucine	rich	repeat	variant
LVIVD	PF08309.6	gi|292654725|ref|YP_003534622.1|	-	0.052	12.5	0.1	0.099	11.6	0.1	1.5	1	0	0	1	1	1	0	LVIVD	repeat
DUF3280	PF11684.3	gi|292654725|ref|YP_003534622.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2380)
DUF3522	PF12036.3	gi|292654726|ref|YP_003534623.1|	-	0.021	14.5	0.2	0.025	14.3	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3522)
DUF4245	PF14030.1	gi|292654726|ref|YP_003534623.1|	-	0.082	12.6	0.2	0.12	12.1	0.0	1.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4245)
MgtE	PF01769.11	gi|292654726|ref|YP_003534623.1|	-	0.094	13.0	0.6	0.092	13.0	0.4	1.0	1	0	0	1	1	1	0	Divalent	cation	transporter
Ribosomal_L15e	PF00827.12	gi|292654727|ref|YP_003534624.1|	-	5.6e-83	277.1	6.9	6.5e-83	276.9	4.8	1.0	1	0	0	1	1	1	1	Ribosomal	L15
BPD_transp_1	PF00528.17	gi|292654728|ref|YP_003534625.1|	-	2.2e-12	46.8	17.3	2.2e-12	46.8	12.0	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|292654729|ref|YP_003534626.1|	-	8.3e-15	54.7	14.1	8.3e-15	54.7	9.7	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.1	gi|292654730|ref|YP_003534627.1|	-	7.4e-29	101.3	9.5	1.1e-28	100.7	6.6	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|292654730|ref|YP_003534627.1|	-	0.0022	17.8	0.7	0.0057	16.5	0.5	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3693	PF12472.3	gi|292654730|ref|YP_003534627.1|	-	0.015	14.8	0.1	0.031	13.8	0.0	1.5	1	0	0	1	1	1	0	Phage	related	protein
ABC_tran	PF00005.22	gi|292654731|ref|YP_003534628.1|	-	2.4e-32	112.1	0.0	3.9e-32	111.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|292654731|ref|YP_003534628.1|	-	5.7e-09	35.8	0.5	1.9e-08	34.1	0.4	2.0	1	0	0	1	1	1	1	TOBE	domain
TOBE	PF03459.12	gi|292654731|ref|YP_003534628.1|	-	2.7e-08	33.8	1.5	9.2e-07	28.8	0.1	2.7	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.1	gi|292654731|ref|YP_003534628.1|	-	1.2e-06	28.7	0.0	0.0015	18.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292654731|ref|YP_003534628.1|	-	0.00033	19.9	0.2	0.0017	17.5	0.2	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|292654731|ref|YP_003534628.1|	-	0.0026	17.8	0.3	0.0064	16.6	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292654731|ref|YP_003534628.1|	-	0.0038	17.2	0.1	0.0074	16.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292654731|ref|YP_003534628.1|	-	0.0058	16.0	0.1	0.011	15.2	0.1	1.3	1	1	0	1	1	1	1	AAA-like	domain
Zeta_toxin	PF06414.7	gi|292654731|ref|YP_003534628.1|	-	0.0086	15.1	0.0	0.016	14.2	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.24	gi|292654731|ref|YP_003534628.1|	-	0.013	15.6	0.1	0.045	13.9	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|292654731|ref|YP_003534628.1|	-	0.024	13.3	0.0	0.029	13.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_30	PF13604.1	gi|292654731|ref|YP_003534628.1|	-	0.025	14.1	0.0	0.56	9.7	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|292654731|ref|YP_003534628.1|	-	0.028	14.2	0.3	0.081	12.8	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|292654731|ref|YP_003534628.1|	-	0.029	15.1	0.8	0.062	14.1	0.6	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|292654731|ref|YP_003534628.1|	-	0.03	13.8	0.0	0.078	12.5	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|292654731|ref|YP_003534628.1|	-	0.035	14.4	0.1	0.1	12.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|292654731|ref|YP_003534628.1|	-	0.035	13.3	0.0	0.057	12.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|292654731|ref|YP_003534628.1|	-	0.044	13.6	0.0	0.095	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|292654731|ref|YP_003534628.1|	-	0.059	12.2	0.0	0.11	11.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Miro	PF08477.8	gi|292654731|ref|YP_003534628.1|	-	0.11	13.0	0.0	0.21	12.0	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
MobB	PF03205.9	gi|292654731|ref|YP_003534628.1|	-	0.13	11.9	0.1	0.3	10.7	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Paf1	PF03985.8	gi|292654731|ref|YP_003534628.1|	-	0.13	10.9	0.1	0.22	10.2	0.0	1.2	1	0	0	1	1	1	0	Paf1
AAA_25	PF13481.1	gi|292654731|ref|YP_003534628.1|	-	0.15	11.4	0.5	0.52	9.6	0.2	2.2	2	1	0	2	2	2	0	AAA	domain
Prenyltrans_1	PF13243.1	gi|292654732|ref|YP_003534629.1|	-	0.32	11.0	5.3	0.1	12.6	0.9	2.3	2	1	0	2	2	2	0	Prenyltransferase-like
Alpha-amylase	PF00128.19	gi|292654733|ref|YP_003534630.1|	-	4.5e-56	190.5	0.0	6.4e-56	190.0	0.0	1.1	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
PKD	PF00801.15	gi|292654733|ref|YP_003534630.1|	-	1.7e-05	24.4	0.2	6e-05	22.7	0.0	2.0	2	0	0	2	2	2	1	PKD	domain
Glyco_hydro_42C	PF08533.5	gi|292654733|ref|YP_003534630.1|	-	0.00019	20.8	0.0	0.00052	19.4	0.0	1.8	1	0	0	1	1	1	1	Beta-galactosidase	C-terminal	domain
DUF3459	PF11941.3	gi|292654733|ref|YP_003534630.1|	-	0.00072	19.6	3.7	0.00074	19.5	0.6	2.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3459)
Alpha-amylase_C	PF02806.13	gi|292654733|ref|YP_003534630.1|	-	0.011	15.8	0.0	0.049	13.7	0.0	2.1	1	0	0	1	1	1	0	Alpha	amylase,	C-terminal	all-beta	domain
Regulator_TrmB	PF11495.3	gi|292654734|ref|YP_003534631.1|	-	1.7e-63	213.7	0.0	2.2e-63	213.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|292654734|ref|YP_003534631.1|	-	9.5e-14	50.8	0.0	1.9e-13	49.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292654734|ref|YP_003534631.1|	-	0.00041	20.0	0.0	0.00082	19.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|292654734|ref|YP_003534631.1|	-	0.009	15.6	0.1	1.4	8.6	0.0	3.1	2	1	1	3	3	3	1	HTH	domain
HTH_36	PF13730.1	gi|292654734|ref|YP_003534631.1|	-	0.015	15.4	0.0	1.9	8.7	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654734|ref|YP_003534631.1|	-	0.017	14.7	0.1	0.047	13.3	0.0	1.8	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.1	gi|292654734|ref|YP_003534631.1|	-	0.032	14.0	0.0	0.072	12.8	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_6	PF01418.12	gi|292654734|ref|YP_003534631.1|	-	0.045	13.4	0.0	0.082	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
Rrf2	PF02082.15	gi|292654734|ref|YP_003534631.1|	-	0.054	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_23	PF13384.1	gi|292654734|ref|YP_003534631.1|	-	0.1	12.3	0.1	0.45	10.2	0.0	2.1	2	1	0	2	2	2	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|292654734|ref|YP_003534631.1|	-	0.12	11.7	0.0	0.42	10.0	0.0	2.0	2	1	1	3	3	3	0	Winged	helix-turn-helix	DNA-binding
RIO1	PF01163.17	gi|292654735|ref|YP_003534632.1|	-	1.6e-45	154.8	0.0	2.1e-45	154.4	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.6	gi|292654735|ref|YP_003534632.1|	-	2.4e-27	94.8	0.0	4.6e-27	93.8	0.0	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.18	gi|292654735|ref|YP_003534632.1|	-	0.00071	19.3	0.5	0.52	10.0	0.0	2.4	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
HATPase_c	PF02518.21	gi|292654736|ref|YP_003534633.1|	-	3.5e-17	62.1	0.0	1e-16	60.6	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292654736|ref|YP_003534633.1|	-	6.4e-07	29.2	0.4	1.3e-06	28.1	0.1	1.7	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|292654736|ref|YP_003534633.1|	-	0.00026	20.6	0.0	0.00092	18.8	0.0	1.8	1	1	1	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3366	PF11846.3	gi|292654736|ref|YP_003534633.1|	-	0.21	11.4	0.4	0.39	10.5	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3366)
Glyoxalase_2	PF12681.2	gi|292654737|ref|YP_003534634.1|	-	2.4e-08	34.5	3.5	2.3e-06	28.1	0.3	3.0	3	1	0	3	3	3	2	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|292654737|ref|YP_003534634.1|	-	0.00031	20.7	0.0	0.041	13.8	0.0	2.9	2	1	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|292654737|ref|YP_003534634.1|	-	0.00089	19.2	0.2	0.81	9.7	0.0	2.6	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
BPL_LplA_LipB	PF03099.14	gi|292654738|ref|YP_003534635.1|	-	8.3e-18	64.5	0.0	1.3e-17	63.9	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
AP_endonuc_2	PF01261.19	gi|292654739|ref|YP_003534636.1|	-	1.2e-24	86.7	0.6	2.3e-24	85.8	0.2	1.5	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Methyltransf_11	PF08241.7	gi|292654740|ref|YP_003534637.1|	-	2.8e-20	72.5	0.1	7e-20	71.3	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654740|ref|YP_003534637.1|	-	1.3e-16	60.5	0.0	1.8e-16	60.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292654740|ref|YP_003534637.1|	-	2.3e-14	53.5	0.1	4.4e-14	52.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654740|ref|YP_003534637.1|	-	6.8e-13	48.6	0.0	1e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654740|ref|YP_003534637.1|	-	3.6e-12	46.8	1.0	1.2e-11	45.1	0.1	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292654740|ref|YP_003534637.1|	-	2.4e-11	43.9	0.0	4.8e-11	42.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292654740|ref|YP_003534637.1|	-	7.2e-10	38.3	0.0	1.3e-09	37.5	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|292654740|ref|YP_003534637.1|	-	2.5e-09	37.1	1.1	2.5e-09	37.1	0.8	2.2	1	1	1	2	2	2	1	Methyltransferase	domain
MetW	PF07021.7	gi|292654740|ref|YP_003534637.1|	-	9.9e-08	31.5	0.0	1.9e-07	30.6	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
FtsJ	PF01728.14	gi|292654740|ref|YP_003534637.1|	-	6.8e-05	22.9	0.1	0.00012	22.0	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_32	PF13679.1	gi|292654740|ref|YP_003534637.1|	-	0.0001	21.9	0.0	0.00018	21.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292654740|ref|YP_003534637.1|	-	0.0002	20.4	0.0	0.00033	19.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.11	gi|292654740|ref|YP_003534637.1|	-	0.0003	19.2	0.0	0.00037	18.9	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
PCMT	PF01135.14	gi|292654740|ref|YP_003534637.1|	-	0.00037	20.1	0.0	0.0015	18.0	0.0	1.9	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.9	gi|292654740|ref|YP_003534637.1|	-	0.0011	18.3	0.1	0.0022	17.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|292654740|ref|YP_003534637.1|	-	0.0035	16.4	0.0	0.0055	15.8	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|292654740|ref|YP_003534637.1|	-	0.0035	16.7	0.0	0.005	16.2	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
TrkA_N	PF02254.13	gi|292654740|ref|YP_003534637.1|	-	0.0068	16.4	0.0	0.022	14.7	0.0	1.8	2	0	0	2	2	2	1	TrkA-N	domain
Methyltransf_9	PF08003.6	gi|292654740|ref|YP_003534637.1|	-	0.012	14.3	0.0	0.016	13.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
PrmA	PF06325.8	gi|292654740|ref|YP_003534637.1|	-	0.033	13.3	0.2	0.047	12.7	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
NAD_binding_10	PF13460.1	gi|292654741|ref|YP_003534638.1|	-	9.6e-41	139.7	0.6	1.1e-40	139.6	0.4	1.0	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292654741|ref|YP_003534638.1|	-	4.1e-08	32.9	0.0	5.1e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.13	gi|292654741|ref|YP_003534638.1|	-	5.1e-05	23.2	0.1	7.5e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Saccharop_dh	PF03435.13	gi|292654741|ref|YP_003534638.1|	-	0.00013	21.0	0.1	0.00017	20.6	0.1	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NmrA	PF05368.8	gi|292654741|ref|YP_003534638.1|	-	0.00014	21.2	0.0	0.00021	20.6	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.20	gi|292654741|ref|YP_003534638.1|	-	0.0012	18.8	2.9	0.0028	17.5	2.0	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|292654741|ref|YP_003534638.1|	-	0.0068	15.3	0.0	0.0099	14.8	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DapB_N	PF01113.15	gi|292654741|ref|YP_003534638.1|	-	0.02	14.7	0.1	0.03	14.2	0.1	1.4	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
DFP	PF04127.10	gi|292654741|ref|YP_003534638.1|	-	0.032	13.8	0.0	0.052	13.1	0.0	1.3	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
3Beta_HSD	PF01073.14	gi|292654741|ref|YP_003534638.1|	-	0.032	12.9	0.0	0.05	12.3	0.0	1.3	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
HxlR	PF01638.12	gi|292654742|ref|YP_003534639.1|	-	2.4e-21	75.1	0.0	2.9e-21	74.8	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR_2	PF12802.2	gi|292654742|ref|YP_003534639.1|	-	8.7e-08	31.7	0.0	1.2e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|292654742|ref|YP_003534639.1|	-	2.5e-07	30.8	0.0	3.7e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|292654742|ref|YP_003534639.1|	-	5.7e-07	29.4	0.0	8.1e-07	28.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|292654742|ref|YP_003534639.1|	-	0.00012	21.8	0.0	0.00017	21.2	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Replic_Relax	PF13814.1	gi|292654742|ref|YP_003534639.1|	-	0.00013	21.9	0.0	0.00016	21.5	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
MarR	PF01047.17	gi|292654742|ref|YP_003534639.1|	-	0.00017	21.2	0.0	0.00047	19.8	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|292654742|ref|YP_003534639.1|	-	0.00038	19.9	0.0	0.00064	19.2	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654742|ref|YP_003534639.1|	-	0.00067	19.2	0.0	0.00097	18.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292654742|ref|YP_003534639.1|	-	0.00082	19.1	0.1	0.0012	18.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292654742|ref|YP_003534639.1|	-	0.0021	17.7	0.0	0.0031	17.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|292654742|ref|YP_003534639.1|	-	0.0023	17.7	0.0	0.0033	17.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|292654742|ref|YP_003534639.1|	-	0.0051	16.1	0.0	0.0093	15.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|292654742|ref|YP_003534639.1|	-	0.02	14.8	0.1	8	6.4	0.0	2.4	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.16	gi|292654742|ref|YP_003534639.1|	-	0.025	14.0	0.1	0.04	13.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF3116	PF11313.3	gi|292654742|ref|YP_003534639.1|	-	0.073	12.6	0.0	0.13	11.8	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
DUF2513	PF10711.4	gi|292654742|ref|YP_003534639.1|	-	0.076	13.0	0.0	0.093	12.8	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
TFIIE_alpha	PF02002.12	gi|292654742|ref|YP_003534639.1|	-	0.1	12.1	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DUF2082	PF09855.4	gi|292654743|ref|YP_003534640.1|	-	6.3e-27	93.2	0.2	7e-27	93.0	0.1	1.0	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Lar_restr_allev	PF14354.1	gi|292654743|ref|YP_003534640.1|	-	0.00021	21.5	0.3	0.00028	21.1	0.2	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|292654743|ref|YP_003534640.1|	-	0.00057	19.0	1.5	0.65	9.2	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654743|ref|YP_003534640.1|	-	0.0034	17.1	2.2	1.3	8.9	0.2	2.1	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654743|ref|YP_003534640.1|	-	0.0076	15.5	0.4	0.8	9.0	0.1	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
TFIIS_C	PF01096.13	gi|292654743|ref|YP_003534640.1|	-	0.03	13.9	2.4	2.1	8.0	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.2	gi|292654743|ref|YP_003534640.1|	-	0.036	13.8	1.3	0.11	12.3	0.9	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.5	gi|292654743|ref|YP_003534640.1|	-	0.041	13.8	0.2	2	8.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|292654743|ref|YP_003534640.1|	-	0.044	13.4	0.7	1.9	8.2	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
CpXC	PF14353.1	gi|292654743|ref|YP_003534640.1|	-	0.061	13.2	0.4	0.11	12.4	0.3	1.4	1	1	0	1	1	1	0	CpXC	protein
DNA_RNApol_7kD	PF03604.8	gi|292654743|ref|YP_003534640.1|	-	0.077	12.4	1.5	1.3	8.5	0.0	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C4_Topoisom	PF01396.14	gi|292654743|ref|YP_003534640.1|	-	0.092	12.2	1.7	8.7	5.9	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF2387	PF09526.5	gi|292654743|ref|YP_003534640.1|	-	0.11	12.4	1.5	1.4	8.8	1.1	2.0	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
zf-ISL3	PF14690.1	gi|292654743|ref|YP_003534640.1|	-	0.11	12.5	0.1	3	7.9	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Elf1	PF05129.8	gi|292654743|ref|YP_003534640.1|	-	0.14	11.8	0.2	0.31	10.7	0.2	1.5	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Ribosomal_S27e	PF01667.12	gi|292654743|ref|YP_003534640.1|	-	0.15	11.6	0.7	8.1	6.0	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	S27
zf-IS66	PF13005.2	gi|292654743|ref|YP_003534640.1|	-	0.22	11.5	2.4	1.9	8.5	1.8	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C2H2_3	PF13878.1	gi|292654743|ref|YP_003534640.1|	-	0.28	10.7	1.3	1.7	8.2	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-ZPR1	PF03367.8	gi|292654743|ref|YP_003534640.1|	-	0.28	10.3	1.5	2.4	7.3	0.0	2.0	1	1	1	2	2	2	0	ZPR1	zinc-finger	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654743|ref|YP_003534640.1|	-	0.3	10.7	3.1	3.6	7.2	0.1	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
NOB1_Zn_bind	PF08772.6	gi|292654743|ref|YP_003534640.1|	-	0.35	10.7	1.9	7.8	6.3	0.6	2.1	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.1	gi|292654743|ref|YP_003534640.1|	-	0.42	10.1	7.7	6.5	6.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|292654743|ref|YP_003534640.1|	-	0.43	10.3	6.4	5.6	6.7	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
A2L_zn_ribbon	PF08792.5	gi|292654743|ref|YP_003534640.1|	-	1.2	8.7	3.5	17	5.0	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-HYPF	PF07503.7	gi|292654743|ref|YP_003534640.1|	-	2	7.9	6.5	1.1	8.7	0.3	2.4	2	1	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.1	gi|292654743|ref|YP_003534640.1|	-	9.5	5.8	6.7	22	4.7	0.8	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654743|ref|YP_003534640.1|	-	9.8	5.9	6.2	21	4.8	0.8	2.3	2	1	0	2	2	2	0	zinc-ribbon	domain
ATP_bind_3	PF01171.15	gi|292654746|ref|YP_003534643.1|	-	1.1e-13	51.0	0.0	1.6e-13	50.5	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.14	gi|292654746|ref|YP_003534643.1|	-	4e-05	23.5	0.0	5.9e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.12	gi|292654746|ref|YP_003534643.1|	-	0.00019	20.4	0.0	0.00029	19.8	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
DUF2392	PF10288.4	gi|292654746|ref|YP_003534643.1|	-	0.0033	17.7	0.0	0.0057	16.9	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2392)
tRNA_Me_trans	PF03054.11	gi|292654746|ref|YP_003534643.1|	-	0.0066	15.0	0.0	0.01	14.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
ThiI	PF02568.9	gi|292654746|ref|YP_003534643.1|	-	0.042	13.2	0.0	0.095	12.1	0.0	1.5	2	0	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.16	gi|292654746|ref|YP_003534643.1|	-	0.074	12.5	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Asparagine	synthase
RecR	PF02132.10	gi|292654746|ref|YP_003534643.1|	-	0.28	10.6	4.6	0.61	9.5	0.8	3.1	3	0	0	3	3	3	0	RecR	protein
FtsZ_C	PF12327.3	gi|292654747|ref|YP_003534644.1|	-	6.6e-35	119.0	0.8	6.6e-35	119.0	0.6	2.8	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
Tubulin	PF00091.20	gi|292654747|ref|YP_003534644.1|	-	3.2e-33	115.3	2.3	1.9e-32	112.8	1.6	2.2	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
ThiF	PF00899.16	gi|292654747|ref|YP_003534644.1|	-	0.046	13.5	0.0	0.13	12.1	0.0	1.7	1	0	0	1	1	1	0	ThiF	family
Methyltransf_31	PF13847.1	gi|292654747|ref|YP_003534644.1|	-	0.088	12.3	0.0	0.18	11.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
RHH_1	PF01402.16	gi|292654748|ref|YP_003534645.1|	-	6.4e-08	32.1	0.2	1.4e-07	31.0	0.0	1.6	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|292654748|ref|YP_003534645.1|	-	0.075	13.2	0.1	0.082	13.0	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0156)
DZR	PF12773.2	gi|292654749|ref|YP_003534646.1|	-	8.5e-12	44.7	28.4	3.5e-07	29.9	7.4	2.2	1	1	2	3	3	3	3	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292654749|ref|YP_003534646.1|	-	5.5e-10	38.1	12.8	9.2e-06	24.7	3.4	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|292654749|ref|YP_003534646.1|	-	6.9e-06	25.3	13.8	0.0069	15.8	4.6	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
RHH_1	PF01402.16	gi|292654749|ref|YP_003534646.1|	-	2.5e-05	23.9	7.3	2.7e-05	23.8	0.6	3.2	2	2	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Cys_rich_KTR	PF14205.1	gi|292654749|ref|YP_003534646.1|	-	0.0011	18.4	2.7	0.18	11.2	0.3	2.6	2	0	0	2	2	2	2	Cysteine-rich	KTR
Prok-RING_1	PF14446.1	gi|292654749|ref|YP_003534646.1|	-	0.0047	16.6	9.4	0.18	11.5	2.9	2.2	1	1	1	2	2	2	2	Prokaryotic	RING	finger	family	1
PolC_DP2	PF03833.8	gi|292654749|ref|YP_003534646.1|	-	0.0094	13.6	2.9	0.013	13.2	2.0	1.1	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
zf-NADH-PPase	PF09297.6	gi|292654749|ref|YP_003534646.1|	-	0.043	13.3	12.7	0.12	11.9	0.1	3.4	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|292654749|ref|YP_003534646.1|	-	0.066	12.9	12.4	0.8	9.4	1.7	3.7	3	1	0	3	3	3	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.5	gi|292654749|ref|YP_003534646.1|	-	0.082	12.8	10.5	2.4	8.1	0.2	3.4	2	1	1	3	3	3	0	Zinc	ribbon	domain
zf-C3HC4_3	PF13920.1	gi|292654749|ref|YP_003534646.1|	-	0.15	11.7	5.6	1.6	8.4	0.7	2.1	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
NOB1_Zn_bind	PF08772.6	gi|292654749|ref|YP_003534646.1|	-	0.19	11.5	10.6	2.7	7.8	3.2	2.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2H2	PF00096.21	gi|292654749|ref|YP_003534646.1|	-	0.31	11.4	6.2	7.2	7.1	0.0	3.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
Zn_Tnp_IS91	PF14319.1	gi|292654749|ref|YP_003534646.1|	-	0.33	10.4	4.2	0.57	9.7	2.9	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zinc-ribbons_6	PF07191.7	gi|292654749|ref|YP_003534646.1|	-	0.34	10.7	8.1	0.25	11.1	2.3	2.2	1	1	2	3	3	3	0	zinc-ribbons
DUF2191	PF09957.4	gi|292654749|ref|YP_003534646.1|	-	0.47	10.3	3.4	0.45	10.3	0.4	2.5	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
DUF35_N	PF12172.3	gi|292654749|ref|YP_003534646.1|	-	0.55	10.2	8.5	0.71	9.8	1.3	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
UPF0547	PF10571.4	gi|292654749|ref|YP_003534646.1|	-	1.3	8.7	10.4	1.6	8.4	0.1	2.6	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PSK_trans_fac	PF07704.6	gi|292654749|ref|YP_003534646.1|	-	1.3	9.7	5.9	22	5.8	4.1	2.2	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
TerY-C	PF15616.1	gi|292654749|ref|YP_003534646.1|	-	2.5	8.0	9.2	0.55	10.1	3.0	1.9	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
Ribosomal_L32p	PF01783.18	gi|292654749|ref|YP_003534646.1|	-	2.5	8.3	4.4	3.5	7.8	1.7	2.2	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
HypA	PF01155.14	gi|292654749|ref|YP_003534646.1|	-	2.8	7.6	8.4	9.9	5.8	3.4	2.4	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|292654749|ref|YP_003534646.1|	-	4.7	7.3	10.0	2.9	8.0	0.4	3.2	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2321	PF10083.4	gi|292654749|ref|YP_003534646.1|	-	5.3	6.5	5.8	2.3	7.6	1.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Sgf11	PF08209.6	gi|292654749|ref|YP_003534646.1|	-	5.4	6.4	8.9	5.8	6.3	0.5	3.0	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Aldo_ket_red	PF00248.16	gi|292654750|ref|YP_003534647.1|	-	2.9e-62	210.0	0.0	3.3e-62	209.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HAD_2	PF13419.1	gi|292654751|ref|YP_003534648.1|	-	2.5e-19	70.1	0.0	3.2e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292654751|ref|YP_003534648.1|	-	1.7e-08	35.1	0.4	1.7e-07	31.8	0.3	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292654751|ref|YP_003534648.1|	-	3.1e-05	23.5	0.2	0.00012	21.6	0.0	2.0	2	0	0	2	2	2	1	HAD-hyrolase-like
Peripla_BP_3	PF13377.1	gi|292654751|ref|YP_003534648.1|	-	0.022	14.7	3.2	13	5.7	0.0	3.2	3	1	0	3	3	3	0	Periplasmic	binding	protein-like	domain
CobD_Cbib	PF03186.8	gi|292654752|ref|YP_003534649.1|	-	3.4e-72	243.0	16.3	3.9e-72	242.8	11.3	1.0	1	0	0	1	1	1	1	CobD/Cbib	protein
CobS	PF02654.10	gi|292654753|ref|YP_003534650.1|	-	1.6e-41	142.4	13.3	2e-41	142.1	9.2	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
NTP_transf_3	PF12804.2	gi|292654754|ref|YP_003534651.1|	-	3.7e-16	59.5	1.7	4.5e-16	59.3	1.2	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|292654754|ref|YP_003534651.1|	-	0.0016	18.0	0.1	0.0033	16.9	0.0	1.6	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.14	gi|292654754|ref|YP_003534651.1|	-	0.014	14.9	0.0	0.16	11.5	0.0	2.1	2	0	0	2	2	2	0	Cytidylyltransferase
NTP_transferase	PF00483.18	gi|292654754|ref|YP_003534651.1|	-	0.11	11.7	0.0	0.17	11.1	0.0	1.3	1	0	0	1	1	1	0	Nucleotidyl	transferase
DBI_PRT	PF02277.12	gi|292654755|ref|YP_003534652.1|	-	1.3e-16	60.6	0.7	2.3e-16	59.7	0.5	1.4	1	0	0	1	1	1	1	Phosphoribosyltransferase
Aminotran_1_2	PF00155.16	gi|292654756|ref|YP_003534653.1|	-	9.7e-42	143.1	0.0	1.2e-41	142.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|292654756|ref|YP_003534653.1|	-	0.0021	17.2	0.0	0.0076	15.4	0.0	1.8	1	1	0	1	1	1	1	Beta-eliminating	lyase
Toxin_49	PF15529.1	gi|292654756|ref|YP_003534653.1|	-	0.093	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Putative	toxin	49
CbiZ	PF01955.13	gi|292654757|ref|YP_003534654.1|	-	3.8e-42	144.2	0.1	4.6e-42	143.9	0.0	1.1	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
Aminotran_1_2	PF00155.16	gi|292654758|ref|YP_003534655.1|	-	6.7e-22	77.9	0.0	8.5e-22	77.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
CbiA	PF01656.18	gi|292654760|ref|YP_003534657.1|	-	5.6e-25	87.8	0.2	6.7e-25	87.6	0.1	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|292654760|ref|YP_003534657.1|	-	1.8e-08	34.4	0.0	2.3e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.13	gi|292654760|ref|YP_003534657.1|	-	2.2e-08	33.6	0.0	1.9e-05	24.0	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|292654760|ref|YP_003534657.1|	-	1.4e-05	24.3	0.2	0.0028	16.7	0.3	2.1	2	0	0	2	2	2	2	Anion-transporting	ATPase
MipZ	PF09140.6	gi|292654760|ref|YP_003534657.1|	-	0.00011	21.4	0.8	0.0013	17.8	0.6	2.0	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.1	gi|292654760|ref|YP_003534657.1|	-	0.00025	20.7	0.5	0.0011	18.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|292654760|ref|YP_003534657.1|	-	0.0051	16.4	0.7	0.067	12.7	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|292654760|ref|YP_003534657.1|	-	0.013	14.9	1.2	0.024	14.0	0.8	1.6	1	1	0	1	1	1	0	AAA	domain
VirC1	PF07015.6	gi|292654760|ref|YP_003534657.1|	-	0.029	13.4	0.3	0.046	12.7	0.2	1.3	1	0	0	1	1	1	0	VirC1	protein
ParA	PF10609.4	gi|292654760|ref|YP_003534657.1|	-	0.03	14.1	0.1	0.057	13.2	0.1	1.5	1	0	0	1	1	1	0	ParA/MinD	ATPase	like
PIF1	PF05970.9	gi|292654760|ref|YP_003534657.1|	-	0.048	12.6	0.0	0.067	12.1	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
YhjQ	PF06564.7	gi|292654760|ref|YP_003534657.1|	-	0.1	11.9	0.1	0.15	11.4	0.1	1.2	1	0	0	1	1	1	0	YhjQ	protein
AAA_19	PF13245.1	gi|292654760|ref|YP_003534657.1|	-	0.45	10.2	5.1	8.1	6.2	0.1	2.9	3	0	0	3	3	3	0	Part	of	AAA	domain
OsmC	PF02566.14	gi|292654762|ref|YP_003534659.1|	-	7.8e-23	80.5	0.0	1.2e-22	79.9	0.0	1.3	1	0	0	1	1	1	1	OsmC-like	protein
T2SM_b	PF10741.4	gi|292654762|ref|YP_003534659.1|	-	0.029	14.0	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M	subtype	b
SnoaL	PF07366.7	gi|292654764|ref|YP_003534661.1|	-	9.8e-36	122.1	0.0	1.1e-35	121.9	0.0	1.0	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_2	PF12680.2	gi|292654764|ref|YP_003534661.1|	-	7.8e-19	67.9	0.1	9.5e-19	67.6	0.1	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.1	gi|292654764|ref|YP_003534661.1|	-	0.0047	17.1	0.0	0.0063	16.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
TOBE_2	PF08402.5	gi|292654764|ref|YP_003534661.1|	-	0.075	13.0	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	TOBE	domain
ACT	PF01842.20	gi|292654765|ref|YP_003534662.1|	-	8.8e-07	28.2	1.2	0.0013	18.1	0.0	3.5	2	1	1	3	3	3	2	ACT	domain
Chordopox_RPO7	PF05864.7	gi|292654765|ref|YP_003534662.1|	-	0.025	14.6	0.1	6.1	7.0	0.1	2.4	1	1	1	2	2	2	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Sigma70_r1_1	PF03979.9	gi|292654765|ref|YP_003534662.1|	-	0.052	13.4	0.1	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-70	factor,	region	1.1
Homoserine_dh	PF00742.14	gi|292654766|ref|YP_003534663.1|	-	1e-45	155.5	0.3	1.5e-45	155.0	0.2	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.16	gi|292654766|ref|YP_003534663.1|	-	5.8e-08	32.6	0.1	1.4e-07	31.3	0.1	1.6	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.11	gi|292654766|ref|YP_003534663.1|	-	3.4e-06	27.4	0.8	3.4e-06	27.4	0.6	1.9	2	1	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|292654766|ref|YP_003534663.1|	-	0.00046	19.6	0.0	0.00079	18.8	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.18	gi|292654766|ref|YP_003534663.1|	-	0.0046	16.6	0.0	0.0082	15.8	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|292654766|ref|YP_003534663.1|	-	0.0049	16.5	0.1	0.0079	15.8	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|292654766|ref|YP_003534663.1|	-	0.0053	16.7	4.1	0.0053	16.7	2.9	2.2	2	1	0	2	2	2	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|292654766|ref|YP_003534663.1|	-	0.018	14.0	0.1	0.024	13.6	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292654766|ref|YP_003534663.1|	-	0.022	14.3	0.2	0.038	13.5	0.2	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292654766|ref|YP_003534663.1|	-	0.056	12.8	0.4	0.11	11.8	0.3	1.6	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
XdhC_C	PF13478.1	gi|292654766|ref|YP_003534663.1|	-	0.067	13.5	0.1	0.15	12.3	0.1	1.6	1	0	0	1	1	1	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.14	gi|292654766|ref|YP_003534663.1|	-	0.093	11.8	0.0	0.19	10.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DHquinase_I	PF01487.10	gi|292654767|ref|YP_003534664.1|	-	8.6e-41	140.0	0.0	1.1e-40	139.7	0.0	1.1	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
DHquinase_I	PF01487.10	gi|292654768|ref|YP_003534665.1|	-	3.6e-34	118.3	0.0	4.3e-34	118.1	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
CENP-P	PF13096.1	gi|292654768|ref|YP_003534665.1|	-	0.12	11.6	0.1	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	CENP-A-nucleosome	distal	(CAD)	centromere	subunit,	CENP-P
Epimerase	PF01370.16	gi|292654769|ref|YP_003534666.1|	-	4.1e-23	82.0	0.0	6.4e-23	81.4	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292654769|ref|YP_003534666.1|	-	6e-15	54.6	0.0	1e-14	53.9	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|292654769|ref|YP_003534666.1|	-	2.2e-11	43.1	0.0	3.1e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|292654769|ref|YP_003534666.1|	-	3.4e-10	40.2	0.0	8.9e-10	38.8	0.0	1.6	2	0	0	2	2	2	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|292654769|ref|YP_003534666.1|	-	1.8e-08	33.6	0.1	6.8e-08	31.7	0.0	1.9	2	1	0	2	2	2	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|292654769|ref|YP_003534666.1|	-	3.2e-08	32.8	0.0	1.1e-06	27.7	0.0	2.7	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|292654769|ref|YP_003534666.1|	-	3e-05	23.9	0.0	0.012	15.5	0.0	3.1	2	1	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|292654769|ref|YP_003534666.1|	-	0.0067	16.1	0.0	0.12	12.0	0.0	2.3	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|292654769|ref|YP_003534666.1|	-	0.14	11.4	0.1	0.31	10.2	0.0	1.6	1	1	0	1	1	1	0	NmrA-like	family
IclR	PF01614.13	gi|292654770|ref|YP_003534667.1|	-	3.4e-29	101.1	0.0	5.2e-29	100.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|292654770|ref|YP_003534667.1|	-	5.5e-08	32.2	0.0	1.2e-07	31.1	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292654770|ref|YP_003534667.1|	-	0.00032	20.4	0.0	0.00057	19.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654770|ref|YP_003534667.1|	-	0.0012	18.5	0.0	0.0019	17.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|292654770|ref|YP_003534667.1|	-	0.014	14.7	0.0	0.027	13.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|292654770|ref|YP_003534667.1|	-	0.025	14.5	0.1	0.13	12.3	0.0	2.2	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
DUF742	PF05331.6	gi|292654770|ref|YP_003534667.1|	-	0.031	13.8	0.0	0.082	12.5	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF742)
MarR_2	PF12802.2	gi|292654770|ref|YP_003534667.1|	-	0.033	13.8	0.0	0.067	12.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|292654770|ref|YP_003534667.1|	-	0.079	12.4	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Methyltransf_6	PF03737.10	gi|292654771|ref|YP_003534668.1|	-	7.8e-32	110.2	2.7	9.8e-32	109.9	1.9	1.1	1	0	0	1	1	1	1	Demethylmenaquinone	methyltransferase
TctC	PF03401.9	gi|292654772|ref|YP_003534669.1|	-	7.8e-48	162.7	0.0	8.9e-48	162.5	0.0	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	family	receptor
TAT_signal	PF10518.4	gi|292654772|ref|YP_003534669.1|	-	0.0023	17.7	1.3	0.0023	17.7	0.9	3.2	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ADH_N	PF08240.7	gi|292654773|ref|YP_003534670.1|	-	1e-28	99.2	2.2	2e-28	98.3	0.3	2.1	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|292654773|ref|YP_003534670.1|	-	6.5e-19	67.7	0.1	1.1e-18	67.0	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|292654773|ref|YP_003534670.1|	-	2.1e-06	28.6	0.0	4.2e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.1	gi|292654773|ref|YP_003534670.1|	-	0.0047	16.9	0.1	0.0074	16.3	0.1	1.3	1	0	0	1	1	1	1	NADH(P)-binding
HI0933_like	PF03486.9	gi|292654773|ref|YP_003534670.1|	-	0.076	11.4	0.3	0.11	10.8	0.2	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|292654773|ref|YP_003534670.1|	-	0.098	12.5	0.1	2.2	8.1	0.1	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lactamase_B	PF00753.22	gi|292654774|ref|YP_003534671.1|	-	7.4e-13	48.5	9.0	9.8e-13	48.1	6.3	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.1	gi|292654774|ref|YP_003534671.1|	-	1.4e-06	27.8	0.0	1.8e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292654774|ref|YP_003534671.1|	-	0.0012	18.4	0.1	0.0019	17.8	0.1	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
TctB	PF07331.6	gi|292654775|ref|YP_003534672.1|	-	2.1e-17	63.0	15.6	2.7e-17	62.7	10.8	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
TctA	PF01970.11	gi|292654776|ref|YP_003534673.1|	-	4.3e-143	476.7	38.6	6e-143	476.2	26.8	1.2	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Usp	PF00582.21	gi|292654777|ref|YP_003534674.1|	-	7.9e-22	77.9	2.4	9.7e-22	77.6	1.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Lactamase_B	PF00753.22	gi|292654778|ref|YP_003534675.1|	-	1.1e-08	35.0	9.7	1.6e-08	34.4	6.8	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.1	gi|292654778|ref|YP_003534675.1|	-	0.0012	18.3	0.0	0.0015	18.0	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DUF1628	PF07790.6	gi|292654782|ref|YP_003534679.1|	-	0.23	12.2	2.0	0.44	11.3	1.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
DUF1628	PF07790.6	gi|292654783|ref|YP_003534680.1|	-	0.006	17.3	0.2	0.011	16.4	0.2	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
T2SF	PF00482.18	gi|292654784|ref|YP_003534681.1|	-	6.6e-15	55.1	0.2	2.7e-07	30.5	0.2	2.6	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|292654785|ref|YP_003534682.1|	-	1e-25	90.1	0.2	2.6e-25	88.8	0.1	1.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|292654785|ref|YP_003534682.1|	-	0.0026	17.2	0.0	0.0055	16.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|292654785|ref|YP_003534682.1|	-	0.03	13.4	0.0	0.053	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|292654785|ref|YP_003534682.1|	-	0.079	13.2	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|292654785|ref|YP_003534682.1|	-	0.15	11.8	0.0	0.96	9.1	0.0	2.4	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|292654785|ref|YP_003534682.1|	-	0.18	11.9	0.0	0.41	10.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|292654785|ref|YP_003534682.1|	-	0.18	11.6	4.0	0.37	10.6	0.0	3.0	4	0	0	4	4	4	0	AAA	domain
AAA_17	PF13207.1	gi|292654785|ref|YP_003534682.1|	-	0.25	12.1	0.0	0.25	12.1	0.0	2.8	3	1	0	3	3	3	0	AAA	domain
HATPase_c	PF02518.21	gi|292654786|ref|YP_003534683.1|	-	4.1e-17	61.8	0.1	1.1e-16	60.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|292654786|ref|YP_003534683.1|	-	5.7e-11	42.4	2.4	9e-09	35.3	0.8	3.0	2	1	0	2	2	2	1	PAS	fold
PAS	PF00989.19	gi|292654786|ref|YP_003534683.1|	-	3.9e-09	36.2	0.5	1.2e-07	31.5	0.1	2.8	2	1	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|292654786|ref|YP_003534683.1|	-	2.1e-08	33.7	0.0	7.2e-08	32.0	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292654786|ref|YP_003534683.1|	-	2.1e-08	33.9	0.2	7e-08	32.3	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.1	gi|292654786|ref|YP_003534683.1|	-	4.2e-08	33.4	0.0	1.8e-06	28.2	0.0	2.6	1	1	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|292654786|ref|YP_003534683.1|	-	0.00025	20.7	0.0	0.00044	19.9	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
UbiA	PF01040.13	gi|292654787|ref|YP_003534684.1|	-	1.6e-15	57.0	23.0	1.8e-15	56.9	15.6	1.3	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
ThiS	PF02597.15	gi|292654788|ref|YP_003534685.1|	-	2.2e-06	28.0	0.1	3.5e-05	24.1	0.1	2.2	1	1	0	1	1	1	1	ThiS	family
zf-ribbon_3	PF13248.1	gi|292654789|ref|YP_003534686.1|	-	3.7e-05	22.7	0.8	6.3e-05	22.0	0.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|292654789|ref|YP_003534686.1|	-	0.00038	20.2	0.6	0.00062	19.5	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|292654789|ref|YP_003534686.1|	-	0.00056	19.2	0.3	0.001	18.5	0.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654789|ref|YP_003534686.1|	-	0.0056	15.9	3.7	0.22	10.8	0.1	2.4	1	1	0	2	2	2	2	TFIIB	zinc-binding
TM2	PF05154.11	gi|292654789|ref|YP_003534686.1|	-	0.02	15.0	1.1	0.03	14.5	0.8	1.3	1	0	0	1	1	1	0	TM2	domain
UPF0547	PF10571.4	gi|292654789|ref|YP_003534686.1|	-	0.042	13.5	3.9	0.082	12.6	2.7	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DUF2244	PF10003.4	gi|292654789|ref|YP_003534686.1|	-	0.066	12.5	0.2	0.095	12.0	0.1	1.2	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
SDF	PF00375.13	gi|292654789|ref|YP_003534686.1|	-	0.087	11.5	0.0	0.098	11.4	0.0	1.0	1	0	0	1	1	1	0	Sodium:dicarboxylate	symporter	family
DUF4084	PF13321.1	gi|292654789|ref|YP_003534686.1|	-	0.09	12.0	0.1	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4084)
HypA	PF01155.14	gi|292654789|ref|YP_003534686.1|	-	0.1	12.3	0.7	0.18	11.5	0.5	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C4H2	PF10146.4	gi|292654789|ref|YP_003534686.1|	-	0.13	12.2	0.1	0.21	11.6	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Prim_Zn_Ribbon	PF08273.7	gi|292654789|ref|YP_003534686.1|	-	1.7	8.8	5.5	1.4	9.0	0.3	2.3	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
EamA	PF00892.15	gi|292654790|ref|YP_003534687.1|	-	2.3e-15	56.7	16.0	2.8e-15	56.4	11.1	1.1	1	0	0	1	1	1	1	EamA-like	transporter	family
Mg_trans_NIPA	PF05653.9	gi|292654790|ref|YP_003534687.1|	-	0.00077	18.5	7.7	0.00077	18.5	5.4	1.6	1	1	0	1	1	1	1	Magnesium	transporter	NIPA
Methyltransf_17	PF12692.2	gi|292654790|ref|YP_003534687.1|	-	0.038	13.6	0.1	0.15	11.7	0.0	1.8	1	1	1	2	2	2	0	S-adenosyl-L-methionine	methyltransferase
EmrE	PF13536.1	gi|292654790|ref|YP_003534687.1|	-	0.17	12.0	20.9	0.53	10.4	14.5	1.8	1	1	0	1	1	1	0	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|292654790|ref|YP_003534687.1|	-	0.46	10.1	17.3	0.96	9.0	12.0	1.6	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
ABC_tran	PF00005.22	gi|292654792|ref|YP_003534689.1|	-	5.4e-54	182.2	0.0	7.7e-28	97.4	0.0	2.9	2	1	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.7	gi|292654792|ref|YP_003534689.1|	-	9.1e-42	141.2	4.2	2.5e-22	78.9	0.4	2.4	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292654792|ref|YP_003534689.1|	-	3e-17	63.5	0.0	8.6e-08	32.4	0.0	4.0	4	0	0	4	4	4	2	AAA	domain
AAA_22	PF13401.1	gi|292654792|ref|YP_003534689.1|	-	3.9e-05	23.8	0.2	0.98	9.5	0.0	4.2	4	0	0	4	4	4	1	AAA	domain
ATP-synt_ab	PF00006.20	gi|292654792|ref|YP_003534689.1|	-	7.4e-05	22.3	0.0	0.29	10.6	0.0	2.7	2	1	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_5	PF07728.9	gi|292654792|ref|YP_003534689.1|	-	0.0002	21.1	0.0	0.93	9.2	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.1	gi|292654792|ref|YP_003534689.1|	-	0.00055	19.4	3.2	0.52	9.8	0.4	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|292654792|ref|YP_003534689.1|	-	0.00072	19.0	1.6	1.6	8.1	0.2	4.0	4	1	0	4	4	4	2	AAA	domain
AAA_16	PF13191.1	gi|292654792|ref|YP_003534689.1|	-	0.012	15.5	10.1	0.49	10.3	0.0	4.0	3	1	0	3	3	3	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|292654792|ref|YP_003534689.1|	-	0.022	15.0	0.0	1.5	9.1	0.0	2.9	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|292654792|ref|YP_003534689.1|	-	0.023	13.7	0.1	0.9	8.5	0.0	2.5	3	0	0	3	3	3	0	AAA	ATPase	domain
AAA	PF00004.24	gi|292654792|ref|YP_003534689.1|	-	0.023	14.8	0.1	4.2	7.5	0.0	3.9	4	0	0	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|292654792|ref|YP_003534689.1|	-	0.031	13.7	0.0	4.8	6.5	0.0	2.8	2	0	0	2	2	2	0	AAA-like	domain
DUF258	PF03193.11	gi|292654792|ref|YP_003534689.1|	-	0.036	13.2	0.7	3	7.0	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AIG1	PF04548.11	gi|292654792|ref|YP_003534689.1|	-	0.038	13.0	0.2	3.9	6.5	0.1	2.5	2	0	0	2	2	2	0	AIG1	family
Mg_chelatase	PF01078.16	gi|292654792|ref|YP_003534689.1|	-	0.044	12.9	0.1	7.1	5.7	0.0	2.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|292654792|ref|YP_003534689.1|	-	0.057	12.8	0.0	5.2	6.4	0.0	2.5	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.17	gi|292654792|ref|YP_003534689.1|	-	0.22	11.6	0.1	12	6.0	0.1	2.5	2	0	0	2	2	2	0	RNA	helicase
Sigma54_activat	PF00158.21	gi|292654792|ref|YP_003534689.1|	-	2.6	7.5	3.8	43	3.5	0.1	3.2	4	0	0	4	4	4	0	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|292654792|ref|YP_003534689.1|	-	3.3	6.4	3.8	14	4.4	0.5	2.2	2	0	0	2	2	2	0	NB-ARC	domain
SBP_bac_5	PF00496.17	gi|292654793|ref|YP_003534690.1|	-	1.6e-86	290.5	0.2	2.1e-86	290.0	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|292654793|ref|YP_003534690.1|	-	0.00027	20.6	7.4	0.00053	19.7	5.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292654793|ref|YP_003534690.1|	-	0.0043	16.1	1.5	0.0083	15.2	1.1	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.17	gi|292654794|ref|YP_003534691.1|	-	3.5e-37	127.6	13.6	5.7e-37	127.0	9.4	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|292654795|ref|YP_003534692.1|	-	2.9e-32	111.7	9.6	2.9e-32	111.7	6.7	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|292654795|ref|YP_003534692.1|	-	2.7e-05	23.4	0.5	2.7e-05	23.4	0.4	2.2	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Spore_YtrH	PF14034.1	gi|292654796|ref|YP_003534693.1|	-	3.8	7.4	7.8	1.3	9.0	1.3	2.2	2	1	0	2	2	2	0	Sporulation	protein	YtrH
DUF2910	PF11139.3	gi|292654796|ref|YP_003534693.1|	-	5.1	6.1	18.6	31	3.6	12.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2910)
Tetraspannin	PF00335.15	gi|292654796|ref|YP_003534693.1|	-	9.3	5.4	6.6	11	5.2	4.6	1.2	1	1	0	1	1	1	0	Tetraspanin	family
PAS_9	PF13426.1	gi|292654797|ref|YP_003534694.1|	-	1.8e-60	201.7	0.6	3.4e-25	88.4	0.0	4.8	5	0	0	5	5	5	4	PAS	domain
PAS	PF00989.19	gi|292654797|ref|YP_003534694.1|	-	7.1e-46	154.6	1.1	2.7e-13	49.7	0.0	5.2	4	1	0	4	4	4	4	PAS	fold
PAS_4	PF08448.5	gi|292654797|ref|YP_003534694.1|	-	8.7e-43	144.8	11.6	6.6e-15	55.0	0.1	4.7	4	0	0	4	4	4	4	PAS	fold
PAS_8	PF13188.1	gi|292654797|ref|YP_003534694.1|	-	2.6e-23	80.9	0.1	2.5e-07	30.3	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.6	gi|292654797|ref|YP_003534694.1|	-	2.8e-18	65.7	0.1	3.8e-09	36.5	0.0	3.8	5	0	0	5	5	5	2	PAS	fold
HATPase_c	PF02518.21	gi|292654797|ref|YP_003534694.1|	-	1.3e-13	50.6	0.0	3.3e-13	49.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.1	gi|292654797|ref|YP_003534694.1|	-	4.3e-10	39.8	0.0	0.0062	16.7	0.0	5.6	6	0	0	6	6	5	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292654797|ref|YP_003534694.1|	-	1.5e-07	31.2	0.2	6.6e-07	29.1	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.2	gi|292654797|ref|YP_003534694.1|	-	6e-06	26.2	3.1	0.94	9.5	0.1	5.3	4	2	0	4	4	4	2	PAS	fold
HATPase_c_3	PF13589.1	gi|292654797|ref|YP_003534694.1|	-	0.0011	18.5	0.0	0.0024	17.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292654797|ref|YP_003534694.1|	-	0.0049	16.8	4.7	0.0099	15.8	1.5	3.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
KaiC	PF06745.8	gi|292654798|ref|YP_003534695.1|	-	7e-73	244.4	0.0	1.3e-37	129.1	0.0	2.0	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|292654798|ref|YP_003534695.1|	-	6.4e-25	87.7	0.0	7.2e-13	48.3	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
Rad51	PF08423.6	gi|292654798|ref|YP_003534695.1|	-	3.8e-07	29.2	0.1	0.0022	16.9	0.0	3.1	3	0	0	3	3	3	1	Rad51
AAA_22	PF13401.1	gi|292654798|ref|YP_003534695.1|	-	4.4e-07	30.0	0.2	1.5e-05	25.1	0.0	2.7	2	2	0	2	2	2	1	AAA	domain
GvpD	PF07088.6	gi|292654798|ref|YP_003534695.1|	-	3.7e-06	25.5	0.0	4.8e-05	21.8	0.0	2.3	2	1	0	2	2	2	1	GvpD	gas	vesicle	protein
CbiA	PF01656.18	gi|292654798|ref|YP_003534695.1|	-	1.7e-05	24.2	0.6	0.00021	20.7	0.3	2.5	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
RecA	PF00154.16	gi|292654798|ref|YP_003534695.1|	-	1.8e-05	23.9	0.3	0.0021	17.1	0.1	2.4	2	1	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_17	PF13207.1	gi|292654798|ref|YP_003534695.1|	-	3.1e-05	24.7	0.0	0.0001	23.1	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|292654798|ref|YP_003534695.1|	-	9.5e-05	22.0	0.1	0.017	14.8	0.0	2.7	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|292654798|ref|YP_003534695.1|	-	0.00012	22.0	3.6	0.00043	20.3	0.3	2.9	2	2	1	3	3	3	1	AAA	ATPase	domain
DnaB_C	PF03796.10	gi|292654798|ref|YP_003534695.1|	-	0.00021	20.2	0.0	0.0061	15.4	0.0	2.7	2	1	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_29	PF13555.1	gi|292654798|ref|YP_003534695.1|	-	0.0003	20.2	2.7	0.0036	16.7	0.2	2.9	3	0	0	3	3	2	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|292654798|ref|YP_003534695.1|	-	0.00046	20.5	0.0	0.029	14.6	0.0	2.5	2	0	0	2	2	2	1	ABC	transporter
PAXNEB	PF05625.6	gi|292654798|ref|YP_003534695.1|	-	0.00054	18.8	1.8	0.042	12.6	0.4	2.2	2	0	0	2	2	2	1	PAXNEB	protein
NACHT	PF05729.7	gi|292654798|ref|YP_003534695.1|	-	0.001	18.7	0.0	0.21	11.2	0.0	2.9	2	1	0	2	2	2	1	NACHT	domain
AAA_24	PF13479.1	gi|292654798|ref|YP_003534695.1|	-	0.0027	17.3	0.0	2	7.9	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
DUF2075	PF09848.4	gi|292654798|ref|YP_003534695.1|	-	0.0036	16.3	0.1	1.2	8.0	0.0	2.6	3	1	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_30	PF13604.1	gi|292654798|ref|YP_003534695.1|	-	0.0068	16.0	0.7	0.26	10.8	0.5	2.5	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|292654798|ref|YP_003534695.1|	-	0.0079	15.6	0.0	0.15	11.4	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_14	PF13173.1	gi|292654798|ref|YP_003534695.1|	-	0.013	15.3	0.0	2.7	7.9	0.0	3.3	2	2	0	3	3	3	0	AAA	domain
AAA_18	PF13238.1	gi|292654798|ref|YP_003534695.1|	-	0.017	15.4	0.0	0.041	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|292654798|ref|YP_003534695.1|	-	0.02	14.0	0.4	0.37	9.9	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|292654798|ref|YP_003534695.1|	-	0.032	13.6	0.0	0.085	12.2	0.0	1.9	2	0	0	2	2	1	0	AAA-like	domain
RNA_helicase	PF00910.17	gi|292654798|ref|YP_003534695.1|	-	0.033	14.3	0.0	0.49	10.5	0.0	2.6	3	0	0	3	3	3	0	RNA	helicase
MobB	PF03205.9	gi|292654798|ref|YP_003534695.1|	-	0.034	13.8	0.0	0.15	11.7	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|292654798|ref|YP_003534695.1|	-	0.038	13.6	0.0	0.49	10.0	0.0	2.4	2	2	0	2	2	2	0	Archaeal	ATPase
SRP54	PF00448.17	gi|292654798|ref|YP_003534695.1|	-	0.053	12.9	0.1	1.2	8.5	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.24	gi|292654798|ref|YP_003534695.1|	-	0.058	13.6	0.0	0.47	10.6	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|292654798|ref|YP_003534695.1|	-	0.063	13.2	0.2	0.21	11.5	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|292654798|ref|YP_003534695.1|	-	0.072	11.9	0.0	0.66	8.8	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ArsA_ATPase	PF02374.10	gi|292654798|ref|YP_003534695.1|	-	0.13	11.3	0.3	0.25	10.3	0.2	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
TrwB_AAD_bind	PF10412.4	gi|292654798|ref|YP_003534695.1|	-	0.19	10.3	0.0	0.71	8.4	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Cdc6_C	PF09079.6	gi|292654799|ref|YP_003534696.1|	-	1.5e-23	82.2	0.0	5.7e-23	80.4	0.0	2.0	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|292654799|ref|YP_003534696.1|	-	3.2e-11	43.5	0.0	1.3e-10	41.5	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292654799|ref|YP_003534696.1|	-	1.1e-10	41.7	0.1	4.1e-10	39.9	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|292654799|ref|YP_003534696.1|	-	1.3e-08	35.1	0.0	3.1e-08	33.8	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|292654799|ref|YP_003534696.1|	-	0.00044	20.0	0.0	0.00084	19.0	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|292654799|ref|YP_003534696.1|	-	0.0011	18.5	0.0	0.004	16.8	0.0	1.9	1	1	0	2	2	2	1	NACHT	domain
AAA_25	PF13481.1	gi|292654799|ref|YP_003534696.1|	-	0.0012	18.3	0.0	0.14	11.5	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|292654799|ref|YP_003534696.1|	-	0.0017	17.2	0.0	0.003	16.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.17	gi|292654799|ref|YP_003534696.1|	-	0.0042	15.9	0.0	0.0066	15.3	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_18	PF13238.1	gi|292654799|ref|YP_003534696.1|	-	0.0074	16.5	0.2	0.054	13.8	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|292654799|ref|YP_003534696.1|	-	0.014	15.0	0.0	0.086	12.5	0.0	2.3	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
DEAD	PF00270.24	gi|292654799|ref|YP_003534696.1|	-	0.017	14.6	0.0	1.7	8.0	0.0	2.4	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
Sigma54_activat	PF00158.21	gi|292654799|ref|YP_003534696.1|	-	0.034	13.6	0.0	0.066	12.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|292654799|ref|YP_003534696.1|	-	0.059	13.5	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
FANCI_S3	PF14677.1	gi|292654799|ref|YP_003534696.1|	-	0.09	12.1	0.0	0.18	11.1	0.0	1.4	1	0	0	1	1	1	0	FANCI	solenoid	3
SPOC	PF07744.8	gi|292654799|ref|YP_003534696.1|	-	0.14	12.6	0.0	0.3	11.5	0.0	1.6	1	0	0	1	1	1	0	SPOC	domain
KAP_NTPase	PF07693.9	gi|292654799|ref|YP_003534696.1|	-	0.14	11.1	0.0	7.7	5.3	0.0	2.2	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_17	PF13207.1	gi|292654799|ref|YP_003534696.1|	-	0.18	12.6	3.1	0.48	11.2	0.0	3.0	2	1	0	3	3	3	0	AAA	domain
DUF4129	PF13559.1	gi|292654800|ref|YP_003534697.1|	-	4.2e-14	52.2	3.0	1.4e-13	50.5	2.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF3357	PF11837.3	gi|292654800|ref|YP_003534697.1|	-	0.96	9.3	5.3	7.2	6.5	0.0	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3357)
DUF58	PF01882.13	gi|292654802|ref|YP_003534699.1|	-	2.6e-22	78.7	0.5	6.1e-22	77.5	0.3	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|292654802|ref|YP_003534699.1|	-	1.7e-06	27.9	0.3	1.7e-06	27.9	0.2	3.1	3	1	0	3	3	3	1	Domain	of	unknown	function	DUF11
TRAP_beta	PF05753.9	gi|292654802|ref|YP_003534699.1|	-	0.0043	16.2	0.0	0.0085	15.2	0.0	1.4	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
NPCBM_assoc	PF10633.4	gi|292654802|ref|YP_003534699.1|	-	0.0058	16.6	1.6	0.02	14.9	0.9	2.2	1	1	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|292654802|ref|YP_003534699.1|	-	0.081	12.9	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	CARDB
DUF1625	PF07787.7	gi|292654803|ref|YP_003534700.1|	-	0.16	11.1	0.6	0.25	10.5	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1625)
AAA_3	PF07726.6	gi|292654804|ref|YP_003534701.1|	-	1.3e-66	222.1	0.4	2.7e-66	221.1	0.1	1.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292654804|ref|YP_003534701.1|	-	7.3e-15	54.9	0.0	2.7e-14	53.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|292654804|ref|YP_003534701.1|	-	1.3e-07	30.7	0.2	0.00016	20.5	0.0	2.1	2	0	0	2	2	2	2	MCM2/3/5	family
AAA	PF00004.24	gi|292654804|ref|YP_003534701.1|	-	5e-07	29.9	0.0	3e-06	27.4	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|292654804|ref|YP_003534701.1|	-	1.1e-05	24.9	0.0	0.00089	18.7	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|292654804|ref|YP_003534701.1|	-	0.0011	18.1	0.1	0.72	8.9	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.7	gi|292654804|ref|YP_003534701.1|	-	0.0069	15.4	0.1	0.094	11.7	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|292654804|ref|YP_003534701.1|	-	0.13	12.1	0.0	0.49	10.2	0.0	1.9	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Nitroreductase	PF00881.19	gi|292654805|ref|YP_003534702.1|	-	1.4e-35	122.5	0.0	1.6e-35	122.3	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
YesK	PF14150.1	gi|292654806|ref|YP_003534703.1|	-	0.07	13.2	1.7	0.074	13.1	1.1	1.0	1	0	0	1	1	1	0	YesK-like	protein
DUF417	PF04224.7	gi|292654806|ref|YP_003534703.1|	-	0.075	12.3	1.1	0.079	12.3	0.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
DUF3927	PF13064.1	gi|292654806|ref|YP_003534703.1|	-	0.14	11.6	0.6	0.14	11.6	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3927)
DUF2198	PF09964.4	gi|292654806|ref|YP_003534703.1|	-	0.23	11.2	3.1	0.27	11.0	2.2	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2198)
HMGL-like	PF00682.14	gi|292654808|ref|YP_003534705.1|	-	8.6e-57	192.5	0.6	8.6e-57	192.5	0.4	1.6	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.5	gi|292654808|ref|YP_003534705.1|	-	1.2e-31	109.2	0.7	2.3e-31	108.3	0.5	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
PSK_trans_fac	PF07704.6	gi|292654808|ref|YP_003534705.1|	-	0.5	11.0	5.4	16	6.2	0.0	4.1	4	1	1	5	5	5	0	Rv0623-like	transcription	factor
DUF192	PF02643.10	gi|292654809|ref|YP_003534706.1|	-	6.8e-18	64.3	0.0	8.2e-18	64.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
DUF968	PF06147.6	gi|292654810|ref|YP_003534707.1|	-	0.0066	16.3	4.3	0.023	14.6	3.0	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF968)
C1_1	PF00130.17	gi|292654810|ref|YP_003534707.1|	-	0.096	12.4	0.3	0.096	12.4	0.2	2.2	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2960	PF11173.3	gi|292654810|ref|YP_003534707.1|	-	0.11	12.8	0.5	0.52	10.6	0.0	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2960)
HNH	PF01844.18	gi|292654810|ref|YP_003534707.1|	-	0.27	11.1	2.0	1.8	8.5	1.4	2.2	1	1	0	1	1	1	0	HNH	endonuclease
GATase	PF00117.23	gi|292654811|ref|YP_003534708.1|	-	1.6e-33	115.7	0.0	1.8e-33	115.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292654811|ref|YP_003534708.1|	-	5.5e-13	48.8	1.6	1.2e-11	44.4	0.2	2.8	2	1	0	2	2	2	1	Peptidase	C26
GATase_3	PF07685.9	gi|292654811|ref|YP_003534708.1|	-	0.0062	16.1	0.2	0.013	15.1	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF2070	PF09843.4	gi|292654812|ref|YP_003534709.1|	-	1.2e-49	168.1	0.1	1.8e-49	167.6	0.1	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
A2L_zn_ribbon	PF08792.5	gi|292654813|ref|YP_003534710.1|	-	0.00097	18.5	1.0	1	8.8	0.1	2.2	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|292654813|ref|YP_003534710.1|	-	0.0012	18.0	11.7	0.01	14.9	4.2	1.9	1	1	1	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292654813|ref|YP_003534710.1|	-	0.0013	18.0	1.3	0.4	10.0	0.1	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|292654813|ref|YP_003534710.1|	-	0.0029	17.0	1.1	1.7	8.2	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-C2H2_3	PF13878.1	gi|292654813|ref|YP_003534710.1|	-	0.008	15.7	0.6	1.2	8.7	0.0	2.2	2	0	0	2	2	2	1	zinc-finger	of	acetyl-transferase	ESCO
Nudix_N_2	PF14803.1	gi|292654813|ref|YP_003534710.1|	-	0.0097	15.5	3.1	0.088	12.5	0.2	2.3	2	0	0	2	2	2	1	Nudix	N-terminal
ADK_lid	PF05191.9	gi|292654813|ref|YP_003534710.1|	-	0.025	14.2	6.0	0.13	11.9	0.8	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Baculo_ME53	PF06061.6	gi|292654813|ref|YP_003534710.1|	-	0.047	12.6	0.1	0.049	12.6	0.1	1.1	1	0	0	1	1	1	0	Baculoviridae	ME53
zinc_ribbon_5	PF13719.1	gi|292654813|ref|YP_003534710.1|	-	0.049	13.2	0.8	3.4	7.3	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292654813|ref|YP_003534710.1|	-	0.051	13.5	0.3	5.4	7.0	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654813|ref|YP_003534710.1|	-	0.054	13.1	0.8	3.8	7.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654813|ref|YP_003534710.1|	-	0.067	12.8	2.0	2.4	7.8	0.1	2.2	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654813|ref|YP_003534710.1|	-	0.098	12.4	2.4	1.5	8.6	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C4pol	PF14260.1	gi|292654813|ref|YP_003534710.1|	-	0.11	12.4	0.1	0.29	11.1	0.0	1.6	1	1	0	1	1	1	0	C4-type	zinc-finger	of	DNA	polymerase	delta
DZR	PF12773.2	gi|292654813|ref|YP_003534710.1|	-	0.12	12.2	1.8	0.9	9.4	1.3	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RING_3	PF14369.1	gi|292654813|ref|YP_003534710.1|	-	0.13	12.2	0.2	12	5.9	0.0	2.2	2	0	0	2	2	2	0	zinc-finger
UPF0547	PF10571.4	gi|292654813|ref|YP_003534710.1|	-	0.14	11.8	1.1	2.9	7.6	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|292654813|ref|YP_003534710.1|	-	0.16	11.5	0.2	0.16	11.5	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|292654813|ref|YP_003534710.1|	-	0.21	11.3	1.3	10	5.9	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-tcix	PF14952.1	gi|292654813|ref|YP_003534710.1|	-	0.25	10.7	3.8	0.95	8.8	0.1	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Lar_restr_allev	PF14354.1	gi|292654813|ref|YP_003534710.1|	-	0.36	11.1	2.1	2.8	8.3	1.5	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF35_N	PF12172.3	gi|292654813|ref|YP_003534710.1|	-	1	9.3	5.4	16	5.5	3.8	2.3	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L37e	PF01907.14	gi|292654813|ref|YP_003534710.1|	-	1.6	8.5	4.5	1.3	8.8	0.3	2.3	1	1	1	2	2	2	0	Ribosomal	protein	L37e
DUF1610	PF07754.6	gi|292654813|ref|YP_003534710.1|	-	9.7	6.4	8.3	5.4	7.2	0.4	2.6	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF1610)
DUF3194	PF11419.3	gi|292654814|ref|YP_003534711.1|	-	0.00041	20.4	2.3	0.00056	20.0	1.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
RVT_2	PF07727.9	gi|292654814|ref|YP_003534711.1|	-	0.035	13.0	0.0	0.043	12.7	0.0	1.1	1	0	0	1	1	1	0	Reverse	transcriptase	(RNA-dependent	DNA	polymerase)
BON	PF04972.12	gi|292654814|ref|YP_003534711.1|	-	8.7	6.1	7.2	5.9	6.7	1.5	2.8	1	1	1	2	2	2	0	BON	domain
Prefoldin_2	PF01920.15	gi|292654815|ref|YP_003534712.1|	-	3.3e-23	81.4	20.7	3.7e-23	81.3	14.4	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin	PF02996.12	gi|292654815|ref|YP_003534712.1|	-	8.6e-05	22.1	12.7	0.00013	21.5	8.8	1.3	1	0	0	1	1	1	1	Prefoldin	subunit
Sigma70_ner	PF04546.8	gi|292654815|ref|YP_003534712.1|	-	0.0023	17.6	12.3	0.003	17.1	1.0	2.0	1	1	1	2	2	2	1	Sigma-70,	non-essential	region
CobN-Mg_chel	PF02514.11	gi|292654815|ref|YP_003534712.1|	-	0.011	13.1	2.7	0.012	13.0	1.9	1.0	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
Tape_meas_lam_C	PF09718.5	gi|292654815|ref|YP_003534712.1|	-	0.053	13.4	1.1	0.96	9.4	0.5	2.5	2	1	1	3	3	3	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
DrrA_P4M	PF14860.1	gi|292654815|ref|YP_003534712.1|	-	0.059	13.1	8.2	0.026	14.2	2.5	2.0	1	1	1	2	2	2	0	DrrA	phosphatidylinositol	4-phosphate	binding	domain
Radical_SAM_N	PF08497.5	gi|292654815|ref|YP_003534712.1|	-	0.062	12.2	2.0	0.073	11.9	1.4	1.1	1	0	0	1	1	1	0	Radical	SAM	N-terminal
Jnk-SapK_ap_N	PF09744.4	gi|292654815|ref|YP_003534712.1|	-	0.1	12.5	12.5	0.16	11.9	8.7	1.2	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
DUF1664	PF07889.7	gi|292654815|ref|YP_003534712.1|	-	0.19	11.4	9.2	0.73	9.6	1.5	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
HTH_Tnp_Mu_1	PF02316.11	gi|292654815|ref|YP_003534712.1|	-	0.22	11.2	2.8	0.19	11.4	1.2	1.5	1	1	0	1	1	1	0	Mu	DNA-binding	domain
DUF3584	PF12128.3	gi|292654815|ref|YP_003534712.1|	-	0.26	8.5	12.1	0.33	8.2	8.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Seryl_tRNA_N	PF02403.17	gi|292654815|ref|YP_003534712.1|	-	0.3	11.1	12.0	1.2	9.1	1.2	2.2	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Mem_trans	PF03547.13	gi|292654815|ref|YP_003534712.1|	-	0.35	9.1	4.1	0.39	8.9	2.8	1.1	1	0	0	1	1	1	0	Membrane	transport	protein
Laminin_I	PF06008.9	gi|292654815|ref|YP_003534712.1|	-	0.37	10.0	16.7	0.11	11.8	2.7	2.1	1	1	1	2	2	2	0	Laminin	Domain	I
Spc7	PF08317.6	gi|292654815|ref|YP_003534712.1|	-	0.46	9.0	13.3	0.68	8.5	9.2	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
NPV_P10	PF05531.7	gi|292654815|ref|YP_003534712.1|	-	0.5	10.6	10.0	0.57	10.4	1.4	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
CDC37_N	PF03234.9	gi|292654815|ref|YP_003534712.1|	-	0.56	10.4	9.8	0.68	10.2	6.8	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF2379	PF09543.5	gi|292654815|ref|YP_003534712.1|	-	0.59	10.0	5.6	0.64	9.9	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2379)
Sec8_exocyst	PF04048.9	gi|292654815|ref|YP_003534712.1|	-	0.73	9.4	9.1	0.15	11.6	0.9	2.2	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
DUF948	PF06103.6	gi|292654815|ref|YP_003534712.1|	-	0.76	9.6	8.4	0.73	9.7	1.5	2.4	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF2357	PF09823.4	gi|292654815|ref|YP_003534712.1|	-	0.8	8.7	9.0	2.3	7.2	0.4	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2357)
Syntaxin_2	PF14523.1	gi|292654815|ref|YP_003534712.1|	-	0.81	9.7	7.4	2.8	8.0	5.1	1.8	1	1	0	1	1	1	0	Syntaxin-like	protein
DUF2353	PF09789.4	gi|292654815|ref|YP_003534712.1|	-	0.82	8.8	10.7	1	8.5	7.4	1.1	1	0	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
SlyX	PF04102.7	gi|292654815|ref|YP_003534712.1|	-	0.93	9.9	10.1	0.21	12.0	1.1	2.3	2	0	0	2	2	2	0	SlyX
Peptidase_M41	PF01434.13	gi|292654815|ref|YP_003534712.1|	-	0.94	8.9	6.4	1.3	8.4	4.4	1.3	1	1	0	1	1	1	0	Peptidase	family	M41
Laminin_II	PF06009.7	gi|292654815|ref|YP_003534712.1|	-	0.98	9.1	11.3	11	5.7	7.9	2.0	1	1	0	1	1	1	0	Laminin	Domain	II
ADIP	PF11559.3	gi|292654815|ref|YP_003534712.1|	-	1.1	9.1	13.5	0.44	10.4	1.7	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
PspA_IM30	PF04012.7	gi|292654815|ref|YP_003534712.1|	-	1.1	8.6	19.5	2	7.6	3.0	2.0	1	1	1	2	2	2	0	PspA/IM30	family
AAA_27	PF13514.1	gi|292654815|ref|YP_003534712.1|	-	1.2	6.6	15.2	2.3	5.7	10.6	1.4	1	1	0	1	1	1	0	AAA	domain
Fib_alpha	PF08702.5	gi|292654815|ref|YP_003534712.1|	-	1.2	9.2	10.5	0.29	11.2	1.3	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
TraF_2	PF13729.1	gi|292654815|ref|YP_003534712.1|	-	1.3	7.7	5.2	3.8	6.2	0.2	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
DUF935	PF06074.7	gi|292654815|ref|YP_003534712.1|	-	1.3	7.6	6.7	1.7	7.2	4.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF935)
bZIP_1	PF00170.16	gi|292654815|ref|YP_003534712.1|	-	1.4	8.9	16.2	0.075	13.0	3.2	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
TMF_DNA_bd	PF12329.3	gi|292654815|ref|YP_003534712.1|	-	1.4	8.8	18.6	1.1	9.1	4.2	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
PilJ	PF13675.1	gi|292654815|ref|YP_003534712.1|	-	1.6	9.0	9.4	0.33	11.2	0.9	2.2	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF4140	PF13600.1	gi|292654815|ref|YP_003534712.1|	-	1.6	9.1	14.9	0.36	11.2	2.0	2.1	1	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
BLOC1_2	PF10046.4	gi|292654815|ref|YP_003534712.1|	-	1.7	8.8	12.2	0.86	9.7	1.2	2.2	1	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Lebercilin	PF15619.1	gi|292654815|ref|YP_003534712.1|	-	1.9	7.9	16.4	18	4.6	11.4	2.0	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Dor1	PF04124.7	gi|292654815|ref|YP_003534712.1|	-	2	6.8	8.8	0.43	8.9	0.7	2.0	2	0	0	2	2	2	0	Dor1-like	family
COG7	PF10191.4	gi|292654815|ref|YP_003534712.1|	-	2.1	6.1	10.1	3.9	5.2	7.0	1.4	1	1	0	1	1	1	0	Golgi	complex	component	7	(COG7)
Flagellin_N	PF00669.15	gi|292654815|ref|YP_003534712.1|	-	2.2	8.0	9.1	2.4	7.9	2.9	2.1	1	1	1	2	2	2	0	Bacterial	flagellin	N-terminal	helical	region
ACCA	PF03255.9	gi|292654815|ref|YP_003534712.1|	-	2.3	7.7	6.0	3.5	7.1	0.8	2.1	2	0	0	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
AAA_13	PF13166.1	gi|292654815|ref|YP_003534712.1|	-	2.3	6.5	12.6	3.9	5.8	8.7	1.3	1	1	0	1	1	1	0	AAA	domain
ING	PF12998.2	gi|292654815|ref|YP_003534712.1|	-	2.4	8.4	10.8	3.2	8.0	5.7	2.3	1	1	0	1	1	1	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
WXG100	PF06013.7	gi|292654815|ref|YP_003534712.1|	-	2.4	8.2	10.9	8.6	6.4	0.6	2.7	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
AF0941-like	PF14591.1	gi|292654815|ref|YP_003534712.1|	-	2.8	8.0	11.8	18	5.4	8.2	2.2	1	1	0	1	1	1	0	AF0941-like
CENP-F_leu_zip	PF10473.4	gi|292654815|ref|YP_003534712.1|	-	2.8	7.7	21.8	3.7	7.4	6.1	2.1	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
COG2	PF06148.6	gi|292654815|ref|YP_003534712.1|	-	2.9	7.7	11.0	2.7	7.8	1.7	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Syntaxin-6_N	PF09177.6	gi|292654815|ref|YP_003534712.1|	-	3.1	8.2	13.7	1.2	9.5	1.6	2.3	1	1	0	2	2	2	0	Syntaxin	6,	N-terminal
Allexi_40kDa	PF05549.6	gi|292654815|ref|YP_003534712.1|	-	3.2	6.9	5.5	6.2	6.0	3.8	1.4	1	1	0	1	1	1	0	Allexivirus	40kDa	protein
ERM	PF00769.14	gi|292654815|ref|YP_003534712.1|	-	3.3	7.1	22.5	19	4.6	15.6	1.8	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
V_ATPase_I	PF01496.14	gi|292654815|ref|YP_003534712.1|	-	3.7	5.2	16.3	19	2.9	10.7	1.8	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Med10	PF09748.4	gi|292654815|ref|YP_003534712.1|	-	3.8	7.3	7.4	1.7e+02	2.0	5.0	2.1	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
Lectin_N	PF03954.9	gi|292654815|ref|YP_003534712.1|	-	4.1	6.7	9.8	16	4.8	6.8	1.7	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Baculo_PEP_C	PF04513.7	gi|292654815|ref|YP_003534712.1|	-	4.4	7.1	10.7	2.3e+02	1.5	7.6	2.0	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
GAS	PF13851.1	gi|292654815|ref|YP_003534712.1|	-	4.5	6.4	18.3	9.3	5.3	12.7	1.5	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF2408	PF10303.4	gi|292654815|ref|YP_003534712.1|	-	4.7	7.3	10.6	1.6e+02	2.3	7.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
IncA	PF04156.9	gi|292654815|ref|YP_003534712.1|	-	4.7	6.7	24.7	24	4.4	17.1	1.8	1	1	0	1	1	1	0	IncA	protein
DUF3053	PF11254.3	gi|292654815|ref|YP_003534712.1|	-	4.8	6.3	7.8	1.7	7.8	0.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3053)
DUF4164	PF13747.1	gi|292654815|ref|YP_003534712.1|	-	4.9	7.3	12.6	0.55	10.4	1.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
TPR_MLP1_2	PF07926.7	gi|292654815|ref|YP_003534712.1|	-	5	6.8	20.5	27	4.5	13.3	2.2	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
CorA	PF01544.13	gi|292654815|ref|YP_003534712.1|	-	5.2	6.0	9.6	23	3.9	6.8	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF4407	PF14362.1	gi|292654815|ref|YP_003534712.1|	-	5.4	5.8	11.5	4.7	6.0	4.6	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
DUF964	PF06133.6	gi|292654815|ref|YP_003534712.1|	-	5.5	7.0	18.1	0.58	10.2	4.0	2.5	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF964)
YtxH	PF12732.2	gi|292654815|ref|YP_003534712.1|	-	6.2	7.2	13.0	8.9e+02	0.3	9.0	2.3	1	1	0	1	1	1	0	YtxH-like	protein
DUF745	PF05335.8	gi|292654815|ref|YP_003534712.1|	-	6.7	6.1	12.3	12	5.3	8.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
HSP70	PF00012.15	gi|292654815|ref|YP_003534712.1|	-	6.9	4.4	9.4	8.5	4.1	6.5	1.1	1	0	0	1	1	1	0	Hsp70	protein
DUF4618	PF15397.1	gi|292654815|ref|YP_003534712.1|	-	7.4	5.8	17.9	55	2.9	12.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
DUF3450	PF11932.3	gi|292654815|ref|YP_003534712.1|	-	7.4	5.7	19.4	4.5	6.4	3.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
TBPIP	PF07106.8	gi|292654815|ref|YP_003534712.1|	-	9.5	5.7	17.1	9.9	5.6	3.4	2.0	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Phage_GPO	PF05929.6	gi|292654815|ref|YP_003534712.1|	-	9.9	5.3	13.1	7.1	5.7	1.5	2.0	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Pcc1	PF09341.5	gi|292654816|ref|YP_003534713.1|	-	2.6e-19	69.0	0.4	2.9e-19	68.8	0.3	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
DNA_RNApol_7kD	PF03604.8	gi|292654817|ref|YP_003534714.1|	-	1.3e-10	40.5	4.6	1.5e-10	40.3	3.2	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.14	gi|292654817|ref|YP_003534714.1|	-	0.00028	20.5	0.4	0.00028	20.5	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-ribbon_3	PF13248.1	gi|292654817|ref|YP_003534714.1|	-	0.00034	19.7	8.1	0.024	13.8	2.0	2.0	1	1	1	2	2	2	2	zinc-ribbon	domain
DUF329	PF03884.9	gi|292654817|ref|YP_003534714.1|	-	0.00069	19.1	0.7	0.32	10.5	0.0	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF329)
A2L_zn_ribbon	PF08792.5	gi|292654817|ref|YP_003534714.1|	-	0.00096	18.5	0.3	0.44	10.0	0.0	2.1	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292654817|ref|YP_003534714.1|	-	0.0054	16.5	4.9	0.13	12.0	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
DUF951	PF06107.6	gi|292654817|ref|YP_003534714.1|	-	0.0076	15.7	0.2	1.5	8.3	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF951)
zf-CHCC	PF10276.4	gi|292654817|ref|YP_003534714.1|	-	0.0096	15.7	0.0	0.016	15.0	0.0	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
zinc_ribbon_2	PF13240.1	gi|292654817|ref|YP_003534714.1|	-	0.0099	15.3	4.0	0.095	12.2	2.8	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
Cys_rich_CPXG	PF14255.1	gi|292654817|ref|YP_003534714.1|	-	0.011	15.4	0.8	0.042	13.6	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Spt4	PF06093.8	gi|292654817|ref|YP_003534714.1|	-	0.014	15.3	0.2	0.014	15.2	0.1	1.0	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
DZR	PF12773.2	gi|292654817|ref|YP_003534714.1|	-	0.017	14.9	0.8	0.05	13.4	0.6	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-HIT	PF04438.11	gi|292654817|ref|YP_003534714.1|	-	0.02	14.5	2.8	0.81	9.3	0.5	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-Di19	PF05605.7	gi|292654817|ref|YP_003534714.1|	-	0.027	14.5	0.3	0.69	10.0	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.1	gi|292654817|ref|YP_003534714.1|	-	0.037	14.3	0.5	1.5	9.3	0.0	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc-ribbons_6	PF07191.7	gi|292654817|ref|YP_003534714.1|	-	0.051	13.3	0.2	0.068	12.9	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbons
Prok-RING_1	PF14446.1	gi|292654817|ref|YP_003534714.1|	-	0.065	12.9	1.7	0.22	11.2	1.3	1.7	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-AN1	PF01428.11	gi|292654817|ref|YP_003534714.1|	-	0.065	13.1	1.5	0.18	11.6	1.1	1.7	1	1	1	2	2	2	0	AN1-like	Zinc	finger
CpXC	PF14353.1	gi|292654817|ref|YP_003534714.1|	-	0.066	13.1	1.4	0.73	9.7	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
Sgf11	PF08209.6	gi|292654817|ref|YP_003534714.1|	-	0.069	12.4	3.6	1.2	8.5	0.3	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
TFIIS_C	PF01096.13	gi|292654817|ref|YP_003534714.1|	-	0.074	12.7	1.2	5	6.8	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-TFIIB	PF13453.1	gi|292654817|ref|YP_003534714.1|	-	0.075	12.2	1.3	0.12	11.5	0.9	1.4	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-ISL3	PF14690.1	gi|292654817|ref|YP_003534714.1|	-	0.078	13.0	1.8	0.29	11.1	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
C1_1	PF00130.17	gi|292654817|ref|YP_003534714.1|	-	0.1	12.3	0.5	0.13	12.0	0.4	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
OrfB_Zn_ribbon	PF07282.6	gi|292654817|ref|YP_003534714.1|	-	0.12	12.0	2.2	0.16	11.6	1.5	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|292654817|ref|YP_003534714.1|	-	0.12	11.7	4.2	0.45	9.8	3.1	1.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
Zn_ribbon_recom	PF13408.1	gi|292654817|ref|YP_003534714.1|	-	0.12	12.6	1.7	1.4	9.2	0.1	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654817|ref|YP_003534714.1|	-	0.19	11.4	5.9	9.6	5.9	4.1	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292654817|ref|YP_003534714.1|	-	0.21	11.2	5.8	10	5.7	4.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF3268	PF11672.3	gi|292654817|ref|YP_003534714.1|	-	0.25	11.4	0.9	3.8	7.6	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3268)
Zn-ribbon_8	PF09723.5	gi|292654817|ref|YP_003534714.1|	-	0.44	10.5	5.2	5.2	7.0	3.6	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|292654817|ref|YP_003534714.1|	-	0.58	10.2	2.7	1.1	9.3	1.9	1.5	1	1	0	1	1	1	0	zinc-finger
zf-C2HC_2	PF13913.1	gi|292654817|ref|YP_003534714.1|	-	1	9.1	5.0	6.2	6.6	0.7	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Mu-like_Com	PF10122.4	gi|292654817|ref|YP_003534714.1|	-	1.8	7.7	6.4	5.3	6.1	0.9	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zf-C2H2	PF00096.21	gi|292654817|ref|YP_003534714.1|	-	1.8	9.0	4.3	9.4	6.8	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
UPF0547	PF10571.4	gi|292654817|ref|YP_003534714.1|	-	4.7	7.0	7.4	0.62	9.8	1.3	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ribosomal_L37ae	PF01780.14	gi|292654818|ref|YP_003534715.1|	-	6.9e-24	83.5	1.3	8.4e-24	83.2	0.9	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Epimerase	PF01370.16	gi|292654819|ref|YP_003534716.1|	-	9.1e-15	54.7	0.0	4e-14	52.6	0.0	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|292654819|ref|YP_003534716.1|	-	1.6e-10	41.2	0.2	2.3e-10	40.7	0.1	1.3	1	0	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|292654819|ref|YP_003534716.1|	-	7.3e-05	21.7	0.0	0.00074	18.4	0.0	2.0	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
DAO	PF01266.19	gi|292654819|ref|YP_003534716.1|	-	0.0016	17.3	0.3	0.0037	16.2	0.0	1.7	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|292654819|ref|YP_003534716.1|	-	0.0027	16.8	0.0	0.0052	15.8	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|292654819|ref|YP_003534716.1|	-	0.0031	17.5	0.1	0.0059	16.6	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292654819|ref|YP_003534716.1|	-	0.0046	16.8	0.0	0.0077	16.1	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292654819|ref|YP_003534716.1|	-	0.024	15.0	0.0	0.051	13.9	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|292654819|ref|YP_003534716.1|	-	0.028	14.4	0.1	0.062	13.3	0.0	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
TrkA_N	PF02254.13	gi|292654819|ref|YP_003534716.1|	-	0.029	14.3	0.0	0.085	12.8	0.0	1.8	2	0	0	2	2	2	0	TrkA-N	domain
UPF0146	PF03686.8	gi|292654819|ref|YP_003534716.1|	-	0.047	13.5	0.0	0.079	12.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
NAD_binding_7	PF13241.1	gi|292654819|ref|YP_003534716.1|	-	0.1	12.8	0.0	0.27	11.5	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
NAD_binding_3	PF03447.11	gi|292654819|ref|YP_003534716.1|	-	0.12	12.8	0.1	0.36	11.2	0.0	1.8	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
Glyco_trans_4_4	PF13579.1	gi|292654819|ref|YP_003534716.1|	-	6.2	6.9	9.4	0.88	9.6	2.8	2.0	1	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
DUF2103	PF09876.4	gi|292654820|ref|YP_003534717.1|	-	1.7e-44	149.8	0.2	2.7e-44	149.1	0.1	1.3	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
DUF3247	PF11607.3	gi|292654820|ref|YP_003534717.1|	-	0.04	14.1	0.7	0.19	11.9	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3247)
zf-FPG_IleRS	PF06827.9	gi|292654820|ref|YP_003534717.1|	-	0.7	9.5	3.2	1.8	8.2	2.2	1.7	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zinc_ribbon_2	PF13240.1	gi|292654820|ref|YP_003534717.1|	-	0.99	8.9	3.5	1.8	8.1	2.5	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
TruD	PF01142.13	gi|292654822|ref|YP_003534719.1|	-	8.8e-89	297.7	0.0	1e-88	297.6	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
PTH2	PF01981.11	gi|292654823|ref|YP_003534720.1|	-	1.8e-41	140.4	0.0	1.9e-41	140.3	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Yip1	PF04893.12	gi|292654824|ref|YP_003534721.1|	-	1.3e-16	60.5	3.8	2e-16	60.0	2.6	1.2	1	0	0	1	1	1	1	Yip1	domain
DUF1049	PF06305.6	gi|292654824|ref|YP_003534721.1|	-	3.3	7.2	5.2	4.5	6.8	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1049)
DCD	PF06559.6	gi|292654825|ref|YP_003534722.1|	-	2.5e-22	78.8	0.0	1.4e-11	43.4	0.0	2.1	1	1	1	2	2	2	2	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.14	gi|292654825|ref|YP_003534722.1|	-	1.9e-16	59.6	0.0	3.2e-16	58.9	0.0	1.2	1	0	0	1	1	1	1	dUTPase
Aldolase_2	PF10120.4	gi|292654826|ref|YP_003534723.1|	-	4.4e-44	149.8	0.0	7.1e-44	149.1	0.0	1.3	1	0	0	1	1	1	1	Putative	aldolase
HTH_3	PF01381.17	gi|292654826|ref|YP_003534723.1|	-	1e-06	28.5	0.0	1.8e-06	27.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|292654826|ref|YP_003534723.1|	-	6.3e-05	23.0	0.1	0.00023	21.3	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|292654826|ref|YP_003534723.1|	-	0.00011	21.8	0.0	0.00021	21.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654826|ref|YP_003534723.1|	-	0.00011	21.7	0.0	0.00051	19.6	0.0	2.2	2	0	0	2	2	1	1	MarR	family
HTH_23	PF13384.1	gi|292654826|ref|YP_003534723.1|	-	0.00015	21.2	0.0	0.00042	19.8	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_26	PF13443.1	gi|292654826|ref|YP_003534723.1|	-	0.00022	21.3	0.0	0.0004	20.5	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
Sigma70_r4	PF04545.11	gi|292654826|ref|YP_003534723.1|	-	0.00032	19.9	0.6	0.0014	17.9	0.0	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_19	PF12844.2	gi|292654826|ref|YP_003534723.1|	-	0.00083	19.3	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
KorB	PF08535.5	gi|292654826|ref|YP_003534723.1|	-	0.0017	18.4	0.1	0.12	12.4	0.0	2.8	2	1	0	2	2	2	1	KorB	domain
HTH_24	PF13412.1	gi|292654826|ref|YP_003534723.1|	-	0.0026	17.0	0.0	0.006	15.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_38	PF13936.1	gi|292654826|ref|YP_003534723.1|	-	0.0028	17.1	0.0	0.0063	16.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
RepB	PF07506.6	gi|292654826|ref|YP_003534723.1|	-	0.011	15.5	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
P22_Cro	PF14549.1	gi|292654826|ref|YP_003534723.1|	-	0.022	14.4	0.1	0.048	13.3	0.1	1.5	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
Sigma70_r4_2	PF08281.7	gi|292654826|ref|YP_003534723.1|	-	0.036	13.5	0.8	0.087	12.3	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_20	PF12840.2	gi|292654826|ref|YP_003534723.1|	-	0.044	13.5	0.5	0.25	11.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|292654826|ref|YP_003534723.1|	-	0.056	13.1	0.0	0.13	12.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Cro	PF09048.5	gi|292654826|ref|YP_003534723.1|	-	0.057	13.0	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	Cro
HTH_5	PF01022.15	gi|292654826|ref|YP_003534723.1|	-	0.065	12.9	0.0	0.19	11.4	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF3071	PF11268.3	gi|292654826|ref|YP_003534723.1|	-	0.077	12.7	0.1	0.11	12.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
HTH_10	PF04967.7	gi|292654826|ref|YP_003534723.1|	-	0.14	11.7	0.0	0.29	10.7	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_28	PF13518.1	gi|292654826|ref|YP_003534723.1|	-	0.15	12.0	0.0	0.48	10.4	0.0	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
Methyltransf_18	PF12847.2	gi|292654827|ref|YP_003534724.1|	-	6.6e-13	49.2	0.0	1e-12	48.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654827|ref|YP_003534724.1|	-	7.2e-13	48.5	0.0	8.8e-13	48.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292654827|ref|YP_003534724.1|	-	7e-12	45.6	0.0	1.2e-11	44.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654827|ref|YP_003534724.1|	-	4.6e-11	42.5	0.0	5.7e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292654827|ref|YP_003534724.1|	-	1.4e-09	38.2	0.0	2.2e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654827|ref|YP_003534724.1|	-	8.6e-07	29.0	3.6	1e-06	28.7	0.3	2.4	3	1	0	3	3	3	1	Methyltransferase	domain
PCMT	PF01135.14	gi|292654827|ref|YP_003534724.1|	-	1.9e-06	27.5	0.0	2.9e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.1	gi|292654827|ref|YP_003534724.1|	-	2.1e-06	28.0	0.0	3.7e-06	27.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292654827|ref|YP_003534724.1|	-	3.8e-06	26.1	0.0	4.7e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|292654827|ref|YP_003534724.1|	-	5.6e-05	22.2	0.0	0.00012	21.1	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.14	gi|292654827|ref|YP_003534724.1|	-	0.0002	21.3	0.0	0.00029	20.8	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_19	PF04672.7	gi|292654827|ref|YP_003534724.1|	-	0.0011	18.3	0.1	0.0016	17.7	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl	methyltransferase
GCD14	PF08704.5	gi|292654827|ref|YP_003534724.1|	-	0.0051	16.3	0.0	0.007	15.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Fibrillarin	PF01269.12	gi|292654827|ref|YP_003534724.1|	-	0.011	14.7	0.0	0.022	13.7	0.0	1.4	2	0	0	2	2	2	0	Fibrillarin
MTS	PF05175.9	gi|292654827|ref|YP_003534724.1|	-	0.016	14.5	0.0	0.029	13.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
CMAS	PF02353.15	gi|292654827|ref|YP_003534724.1|	-	0.038	13.0	0.0	0.053	12.5	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Corona_nucleoca	PF00937.13	gi|292654827|ref|YP_003534724.1|	-	0.053	12.4	6.8	0.067	12.1	4.7	1.1	1	0	0	1	1	1	0	Coronavirus	nucleocapsid	protein
NodS	PF05401.6	gi|292654827|ref|YP_003534724.1|	-	0.071	12.5	0.0	0.096	12.0	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
TPMT	PF05724.6	gi|292654827|ref|YP_003534724.1|	-	0.17	11.3	0.0	0.28	10.6	0.0	1.3	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
DUF1509	PF07420.6	gi|292654827|ref|YP_003534724.1|	-	3.4	6.8	10.4	5.4	6.1	7.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1509)
Thi4	PF01946.12	gi|292654829|ref|YP_003534726.1|	-	3.2e-60	203.1	0.2	2.7e-57	193.5	0.1	2.1	1	1	0	1	1	1	1	Thi4	family
DAO	PF01266.19	gi|292654829|ref|YP_003534726.1|	-	1.4e-10	40.6	1.5	2.7e-07	29.8	0.2	2.3	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|292654829|ref|YP_003534726.1|	-	2.1e-10	40.0	2.1	1.9e-07	30.3	0.6	2.2	1	1	1	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292654829|ref|YP_003534726.1|	-	6.8e-10	38.8	0.9	1.7e-09	37.5	0.6	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|292654829|ref|YP_003534726.1|	-	9.5e-10	38.0	0.2	2.3e-09	36.8	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|292654829|ref|YP_003534726.1|	-	1.8e-09	37.2	0.2	2.7e-09	36.6	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292654829|ref|YP_003534726.1|	-	1e-07	30.8	0.0	1.4e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|292654829|ref|YP_003534726.1|	-	9.8e-07	28.8	0.1	1.5e-06	28.2	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292654829|ref|YP_003534726.1|	-	1.9e-06	28.1	0.6	7e-06	26.3	0.4	2.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292654829|ref|YP_003534726.1|	-	6.4e-06	26.3	0.1	1.3e-05	25.3	0.0	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.19	gi|292654829|ref|YP_003534726.1|	-	4.6e-05	22.6	0.0	9e-05	21.7	0.0	1.5	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.1	gi|292654829|ref|YP_003534726.1|	-	6.8e-05	22.6	0.1	0.00015	21.5	0.1	1.6	1	0	0	1	1	1	1	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|292654829|ref|YP_003534726.1|	-	8.5e-05	21.3	0.5	0.0068	15.0	0.1	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
GIDA	PF01134.17	gi|292654829|ref|YP_003534726.1|	-	0.00053	18.9	0.4	0.00081	18.3	0.2	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|292654829|ref|YP_003534726.1|	-	0.0033	17.6	0.0	0.0059	16.8	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|292654829|ref|YP_003534726.1|	-	0.004	16.1	0.3	0.03	13.2	0.1	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
TrkA_N	PF02254.13	gi|292654829|ref|YP_003534726.1|	-	0.02	14.9	0.2	0.045	13.7	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292654829|ref|YP_003534726.1|	-	0.079	12.3	0.1	0.13	11.6	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
YjeF_N	PF03853.10	gi|292654829|ref|YP_003534726.1|	-	0.082	12.5	0.2	0.42	10.1	0.0	2.2	3	0	0	3	3	3	0	YjeF-related	protein	N-terminus
PRMT5	PF05185.11	gi|292654829|ref|YP_003534726.1|	-	0.19	10.6	0.0	0.26	10.1	0.0	1.1	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
FMO-like	PF00743.14	gi|292654829|ref|YP_003534726.1|	-	0.22	9.6	0.1	0.31	9.2	0.1	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
2-oxoacid_dh	PF00198.18	gi|292654830|ref|YP_003534727.1|	-	9.8e-68	227.8	0.0	1.3e-67	227.4	0.0	1.2	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
E3_binding	PF02817.12	gi|292654830|ref|YP_003534727.1|	-	1.6e-29	101.2	7.5	1.2e-15	56.8	0.2	2.8	3	0	0	3	3	3	2	e3	binding	domain
Biotin_lipoyl	PF00364.17	gi|292654830|ref|YP_003534727.1|	-	5e-16	58.0	0.6	9.7e-16	57.1	0.4	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.1	gi|292654830|ref|YP_003534727.1|	-	7.9e-08	31.8	0.0	2.3e-07	30.3	0.0	1.7	1	0	0	1	1	1	1	Biotin-lipoyl	like
RnfC_N	PF13375.1	gi|292654830|ref|YP_003534727.1|	-	0.015	14.9	0.0	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
IF-2	PF11987.3	gi|292654830|ref|YP_003534727.1|	-	0.017	14.9	1.0	0.51	10.2	0.0	3.1	2	1	0	3	3	3	0	Translation-initiation	factor	2
GCV_H	PF01597.14	gi|292654830|ref|YP_003534727.1|	-	0.033	13.8	0.1	0.067	12.8	0.1	1.5	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
HlyD_2	PF12700.2	gi|292654830|ref|YP_003534727.1|	-	0.034	13.3	0.1	0.048	12.8	0.0	1.3	1	0	0	1	1	1	0	HlyD	family	secretion	protein
Peptidase_M23	PF01551.17	gi|292654830|ref|YP_003534727.1|	-	0.044	13.8	0.2	0.16	12.0	0.0	2.0	2	0	0	2	2	2	0	Peptidase	family	M23
NAD_kinase	PF01513.16	gi|292654831|ref|YP_003534728.1|	-	6.8e-17	61.1	0.6	1e-16	60.5	0.1	1.6	2	0	0	2	2	2	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|292654831|ref|YP_003534728.1|	-	4.2e-05	22.9	2.7	9.4e-05	21.8	1.0	2.3	2	1	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
Peptidase_C25_C	PF03785.9	gi|292654831|ref|YP_003534728.1|	-	0.061	13.1	2.2	0.11	12.2	0.6	2.2	1	1	1	2	2	2	0	Peptidase	family	C25,	C	terminal	ig-like	domain
Transket_pyr	PF02779.19	gi|292654832|ref|YP_003534729.1|	-	1.7e-48	164.4	0.1	2.5e-48	163.9	0.1	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|292654832|ref|YP_003534729.1|	-	1.7e-31	108.7	0.2	4e-31	107.5	0.1	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PSK_trans_fac	PF07704.6	gi|292654832|ref|YP_003534729.1|	-	0.094	13.4	0.1	0.34	11.6	0.0	1.9	2	0	0	2	2	2	0	Rv0623-like	transcription	factor
E1_dh	PF00676.15	gi|292654833|ref|YP_003534730.1|	-	5.2e-98	327.4	0.1	6e-98	327.2	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
TPP_enzyme_C	PF02775.16	gi|292654833|ref|YP_003534730.1|	-	7.1e-09	35.4	1.2	4.3e-08	32.8	0.8	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transketolase_N	PF00456.16	gi|292654833|ref|YP_003534730.1|	-	4.8e-08	32.1	0.2	5.9e-08	31.8	0.1	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.1	gi|292654833|ref|YP_003534730.1|	-	8.6e-07	28.1	0.0	1.5e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
SHOCT	PF09851.4	gi|292654833|ref|YP_003534730.1|	-	0.00024	20.4	0.2	0.00024	20.4	0.1	2.1	3	0	0	3	3	3	1	Short	C-terminal	domain
DUF2680	PF10925.3	gi|292654833|ref|YP_003534730.1|	-	0.1	12.5	0.1	0.21	11.4	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2680)
GST_N_2	PF13409.1	gi|292654834|ref|YP_003534731.1|	-	1.7e-23	82.3	0.0	3.1e-23	81.5	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.1	gi|292654834|ref|YP_003534731.1|	-	3.5e-12	46.0	0.2	9.3e-12	44.6	0.2	1.8	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.20	gi|292654834|ref|YP_003534731.1|	-	1.4e-08	34.6	0.6	9.2e-08	31.9	0.1	2.2	2	0	0	2	2	2	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_3	PF14497.1	gi|292654834|ref|YP_003534731.1|	-	6.6e-08	32.9	0.1	1.4e-07	31.9	0.0	1.7	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.1	gi|292654834|ref|YP_003534731.1|	-	1.2e-06	28.6	0.0	6e-06	26.3	0.0	2.0	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
PhoU	PF01895.14	gi|292654834|ref|YP_003534731.1|	-	0.08	13.3	0.2	0.25	11.8	0.2	1.9	1	1	0	1	1	1	0	PhoU	domain
Oxidored_molyb	PF00174.14	gi|292654835|ref|YP_003534732.1|	-	1.4e-18	66.9	0.0	2e-18	66.3	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Cytochrom_B_N	PF00033.14	gi|292654835|ref|YP_003534732.1|	-	0.00037	19.9	14.1	0.036	13.4	0.7	2.3	1	1	1	2	2	2	2	Cytochrome	b(N-terminal)/b6/petB
UbiA	PF01040.13	gi|292654837|ref|YP_003534734.1|	-	0.01	15.0	0.6	0.01	15.0	0.4	1.5	2	0	0	2	2	2	0	UbiA	prenyltransferase	family
PIRT	PF15099.1	gi|292654837|ref|YP_003534734.1|	-	0.065	12.4	0.0	0.14	11.4	0.0	1.5	1	0	0	1	1	1	0	Phosphoinositide-interacting	protein	family
DUF3955	PF13127.1	gi|292654837|ref|YP_003534734.1|	-	0.26	10.8	1.2	0.69	9.4	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3955)
Gram_pos_anchor	PF00746.16	gi|292654837|ref|YP_003534734.1|	-	0.38	10.6	0.2	0.38	10.6	0.1	2.5	3	0	0	3	3	3	0	Gram	positive	anchor
DUF137	PF02006.11	gi|292654838|ref|YP_003534735.1|	-	8.8e-70	233.7	2.5	1.1e-69	233.4	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
CMD	PF02627.15	gi|292654838|ref|YP_003534735.1|	-	0.0034	17.2	2.4	0.0035	17.1	0.6	1.9	2	0	0	2	2	2	1	Carboxymuconolactone	decarboxylase	family
GHMP_kinases_N	PF00288.21	gi|292654839|ref|YP_003534736.1|	-	8.2e-09	35.4	3.0	8.2e-09	35.4	2.0	2.6	2	1	0	2	2	2	1	GHMP	kinases	N	terminal	domain
SHOCT	PF09851.4	gi|292654840|ref|YP_003534737.1|	-	7.5e-10	37.9	4.2	1.7e-09	36.7	2.9	1.7	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|292654840|ref|YP_003534737.1|	-	0.00021	20.9	4.7	0.00021	20.9	3.3	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
DUF4191	PF13829.1	gi|292654840|ref|YP_003534737.1|	-	0.00049	19.2	0.0	0.00061	18.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4191)
GvpG	PF05120.7	gi|292654840|ref|YP_003534737.1|	-	0.00077	19.2	1.8	0.0013	18.4	1.3	1.5	1	0	0	1	1	1	1	Gas	vesicle	protein	G
UPF0104	PF03706.8	gi|292654840|ref|YP_003534737.1|	-	0.00092	18.5	0.1	0.0011	18.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
DUF4231	PF14015.1	gi|292654840|ref|YP_003534737.1|	-	0.017	15.1	0.4	0.023	14.6	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Spore_SspJ	PF09575.5	gi|292654840|ref|YP_003534737.1|	-	0.025	14.7	1.6	0.052	13.7	1.1	1.5	1	0	0	1	1	1	0	Small	spore	protein	J	(Spore_SspJ)
DUF2868	PF11067.3	gi|292654840|ref|YP_003534737.1|	-	0.049	12.7	0.0	0.063	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2868)
DUF2244	PF10003.4	gi|292654840|ref|YP_003534737.1|	-	0.1	11.9	0.3	0.13	11.6	0.2	1.3	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
OEP	PF02321.13	gi|292654840|ref|YP_003534737.1|	-	0.11	12.1	1.3	0.16	11.5	0.9	1.3	1	1	0	1	1	1	0	Outer	membrane	efflux	protein
DUF1469	PF07332.6	gi|292654840|ref|YP_003534737.1|	-	3.2	7.5	6.4	2.4	7.8	3.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
tRNA-synt_2	PF00152.15	gi|292654841|ref|YP_003534738.1|	-	3.9e-89	298.7	0.3	5e-89	298.3	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|292654841|ref|YP_003534738.1|	-	1.1e-13	50.8	0.2	1.9e-13	50.0	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|292654841|ref|YP_003534738.1|	-	0.011	14.9	0.1	0.1	11.7	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	II	core	domain	(F)
BOF	PF04076.8	gi|292654841|ref|YP_003534738.1|	-	0.073	12.9	0.2	0.3	10.9	0.1	2.0	1	1	0	1	1	1	0	Bacterial	OB	fold	(BOF)	protein
DUF4013	PF13197.1	gi|292654843|ref|YP_003534740.1|	-	1.5e-16	60.1	8.7	1.5e-16	60.1	6.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4013)
PcrB	PF01884.12	gi|292654844|ref|YP_003534741.1|	-	1.1e-52	178.5	0.1	1.3e-52	178.3	0.1	1.0	1	0	0	1	1	1	1	PcrB	family
Trp_syntA	PF00290.15	gi|292654844|ref|YP_003534741.1|	-	0.063	11.8	0.2	0.22	10.0	0.0	1.8	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
Mrr_cat	PF04471.7	gi|292654845|ref|YP_003534742.1|	-	1.2e-21	76.6	0.0	2.2e-21	75.7	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
DUF2034	PF10356.4	gi|292654845|ref|YP_003534742.1|	-	0.048	12.8	0.0	0.077	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2034)
Topoisom_bac	PF01131.15	gi|292654846|ref|YP_003534743.1|	-	2.1e-113	379.1	0.0	3.6e-113	378.4	0.0	1.3	2	0	0	2	2	2	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.14	gi|292654846|ref|YP_003534743.1|	-	9.5e-23	79.4	4.2	2.4e-15	55.7	0.4	3.1	4	0	0	4	4	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.17	gi|292654846|ref|YP_003534743.1|	-	7.4e-18	64.3	0.0	1.4e-17	63.4	0.0	1.5	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.1	gi|292654846|ref|YP_003534743.1|	-	4.8e-10	39.4	3.3	2e-08	34.2	1.2	3.0	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|292654846|ref|YP_003534743.1|	-	0.00011	21.6	0.3	0.0026	17.2	0.0	3.0	3	0	0	3	3	3	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|292654846|ref|YP_003534743.1|	-	0.00023	21.0	0.0	0.00064	19.5	0.0	1.7	1	0	0	1	1	1	1	Pathogenicity	locus
HHH	PF00633.18	gi|292654846|ref|YP_003534743.1|	-	0.0037	16.8	0.5	0.024	14.3	0.0	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|292654846|ref|YP_003534743.1|	-	0.012	15.6	0.0	0.042	13.9	0.0	2.0	2	0	0	2	2	1	0	IMS	family	HHH	motif
DUF4332	PF14229.1	gi|292654846|ref|YP_003534743.1|	-	0.012	15.5	0.0	0.026	14.4	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
TfoX_C	PF04994.8	gi|292654846|ref|YP_003534743.1|	-	0.027	14.3	0.0	0.073	12.9	0.0	1.7	1	0	0	1	1	1	0	TfoX	C-terminal	domain
zf-IS66	PF13005.2	gi|292654846|ref|YP_003534743.1|	-	0.37	10.8	4.5	3.6	7.6	0.1	3.8	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DUF1272	PF06906.6	gi|292654846|ref|YP_003534743.1|	-	0.49	10.2	0.1	0.49	10.2	0.0	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-RING_3	PF14369.1	gi|292654846|ref|YP_003534743.1|	-	0.71	9.9	7.3	8.8	6.4	0.0	3.5	3	1	0	3	3	3	0	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|292654846|ref|YP_003534743.1|	-	4.4	7.0	5.0	21	4.8	0.4	3.1	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|292654846|ref|YP_003534743.1|	-	7.1	6.5	12.1	1.4	8.7	2.9	2.8	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
GatB_N	PF02934.10	gi|292654848|ref|YP_003534745.1|	-	3.4e-113	377.3	0.0	4.8e-113	376.8	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|292654848|ref|YP_003534745.1|	-	1.1e-42	145.2	0.0	1.9e-42	144.4	0.0	1.4	1	0	0	1	1	1	1	GatB	domain
DUF3100	PF11299.3	gi|292654849|ref|YP_003534746.1|	-	1.4e-85	286.3	17.4	1.7e-85	286.1	12.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3100)
Neurensin	PF14927.1	gi|292654850|ref|YP_003534747.1|	-	2.7	7.3	5.7	5	6.5	2.8	2.2	2	1	0	2	2	2	0	Neurensin
M20_dimer	PF07687.9	gi|292654851|ref|YP_003534748.1|	-	9.4e-08	31.7	0.3	2e-07	30.7	0.2	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M20	PF01546.23	gi|292654851|ref|YP_003534748.1|	-	0.0016	17.9	10.3	0.0031	17.0	7.1	1.5	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Tropomyosin	PF00261.15	gi|292654852|ref|YP_003534749.1|	-	0.0049	15.9	2.0	0.009	15.1	1.4	1.4	1	0	0	1	1	1	1	Tropomyosin
Striatin	PF08232.7	gi|292654852|ref|YP_003534749.1|	-	0.0085	16.4	1.9	0.011	16.0	1.3	1.1	1	0	0	1	1	1	1	Striatin	family
SlyX	PF04102.7	gi|292654852|ref|YP_003534749.1|	-	0.016	15.5	4.7	0.029	14.7	3.2	1.7	1	1	0	1	1	1	0	SlyX
FlaC_arch	PF05377.6	gi|292654852|ref|YP_003534749.1|	-	0.018	14.9	1.2	0.024	14.5	0.8	1.2	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
NPV_P10	PF05531.7	gi|292654852|ref|YP_003534749.1|	-	0.021	15.0	0.7	0.029	14.5	0.5	1.2	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Snapin_Pallidin	PF14712.1	gi|292654852|ref|YP_003534749.1|	-	0.024	14.9	0.5	0.03	14.6	0.3	1.1	1	0	0	1	1	1	0	Snapin/Pallidin
bZIP_1	PF00170.16	gi|292654852|ref|YP_003534749.1|	-	0.027	14.4	2.2	0.037	13.9	1.5	1.2	1	0	0	1	1	1	0	bZIP	transcription	factor
TBPIP	PF07106.8	gi|292654852|ref|YP_003534749.1|	-	0.03	13.8	0.2	0.036	13.6	0.1	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
SYCE1	PF15233.1	gi|292654852|ref|YP_003534749.1|	-	0.047	13.6	0.7	0.065	13.1	0.5	1.2	1	0	0	1	1	1	0	Synaptonemal	complex	central	element	protein	1
TMF_DNA_bd	PF12329.3	gi|292654852|ref|YP_003534749.1|	-	0.049	13.4	2.6	0.079	12.7	1.8	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF972	PF06156.8	gi|292654852|ref|YP_003534749.1|	-	0.12	12.7	0.5	0.13	12.6	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Atg14	PF10186.4	gi|292654852|ref|YP_003534749.1|	-	0.18	10.6	0.4	0.2	10.5	0.3	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
CENP-Q	PF13094.1	gi|292654852|ref|YP_003534749.1|	-	0.22	11.5	4.8	0.25	11.3	3.4	1.1	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Mnd1	PF03962.10	gi|292654852|ref|YP_003534749.1|	-	0.4	10.3	2.0	0.42	10.2	1.4	1.1	1	0	0	1	1	1	0	Mnd1	family
DUF2360	PF10152.4	gi|292654852|ref|YP_003534749.1|	-	0.46	10.7	6.2	0.54	10.5	4.3	1.1	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
SspB	PF04386.8	gi|292654852|ref|YP_003534749.1|	-	0.51	9.9	2.4	0.61	9.6	1.7	1.2	1	0	0	1	1	1	0	Stringent	starvation	protein	B
Spc24	PF08286.6	gi|292654852|ref|YP_003534749.1|	-	0.52	10.0	6.5	1.1	8.9	4.5	1.8	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Cwf_Cwc_15	PF04889.7	gi|292654852|ref|YP_003534749.1|	-	5.8	6.5	10.2	6.3	6.4	7.1	1.0	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
SMC_N	PF02463.14	gi|292654853|ref|YP_003534750.1|	-	3e-55	186.8	26.6	1.3e-54	184.7	18.4	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.8	gi|292654853|ref|YP_003534750.1|	-	1.1e-28	99.5	0.0	5.4e-28	97.3	0.0	2.3	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_13	PF13166.1	gi|292654853|ref|YP_003534750.1|	-	7.8e-19	67.6	85.4	4.7e-07	28.6	6.0	6.1	3	2	3	6	6	6	5	AAA	domain
AAA_23	PF13476.1	gi|292654853|ref|YP_003534750.1|	-	1.1e-15	58.4	4.6	1.1e-15	58.4	3.2	7.0	2	2	2	4	4	2	1	AAA	domain
IncA	PF04156.9	gi|292654853|ref|YP_003534750.1|	-	1.1e-13	51.2	136.1	6.4e-05	22.6	8.3	8.2	2	2	6	8	8	8	4	IncA	protein
AAA_21	PF13304.1	gi|292654853|ref|YP_003534750.1|	-	1.3e-13	51.6	12.7	2.2e-07	31.1	0.8	4.3	3	1	0	3	3	3	2	AAA	domain
Reo_sigmaC	PF04582.7	gi|292654853|ref|YP_003534750.1|	-	1.2e-10	41.1	35.9	0.00078	18.7	2.6	6.0	3	2	4	7	7	6	5	Reovirus	sigma	C	capsid	protein
Myosin_tail_1	PF01576.14	gi|292654853|ref|YP_003534750.1|	-	4.3e-08	31.4	147.8	9.8e-06	23.5	47.6	3.0	2	1	0	2	2	2	2	Myosin	tail
AAA_15	PF13175.1	gi|292654853|ref|YP_003534750.1|	-	1.1e-07	31.2	0.2	2.4e-05	23.5	0.0	3.4	3	1	0	3	3	2	1	AAA	ATPase	domain
DUF4200	PF13863.1	gi|292654853|ref|YP_003534750.1|	-	2e-06	27.7	125.1	0.00017	21.5	5.2	10.3	4	2	5	10	10	10	4	Domain	of	unknown	function	(DUF4200)
APG6	PF04111.7	gi|292654853|ref|YP_003534750.1|	-	2.1e-05	23.7	122.8	0.0043	16.1	9.4	7.3	2	2	5	7	7	7	5	Autophagy	protein	Apg6
Spc7	PF08317.6	gi|292654853|ref|YP_003534750.1|	-	4.3e-05	22.3	109.0	0.015	13.9	9.3	7.2	2	2	6	8	8	8	6	Spc7	kinetochore	protein
AAA_29	PF13555.1	gi|292654853|ref|YP_003534750.1|	-	4.7e-05	22.8	0.0	0.00012	21.5	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FliJ	PF02050.11	gi|292654853|ref|YP_003534750.1|	-	6.1e-05	23.0	74.3	0.0014	18.6	1.2	7.9	3	2	3	7	7	7	3	Flagellar	FliJ	protein
CENP-F_leu_zip	PF10473.4	gi|292654853|ref|YP_003534750.1|	-	6.6e-05	22.7	134.0	0.028	14.2	12.0	8.2	2	2	4	7	7	7	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ATG16	PF08614.6	gi|292654853|ref|YP_003534750.1|	-	8.1e-05	22.5	118.3	0.01	15.6	9.1	8.6	2	2	4	6	6	6	2	Autophagy	protein	16	(ATG16)
MscS_porin	PF12795.2	gi|292654853|ref|YP_003534750.1|	-	9.2e-05	21.8	91.6	0.019	14.3	2.0	6.6	3	2	3	6	6	6	4	Mechanosensitive	ion	channel	porin	domain
DUF4201	PF13870.1	gi|292654853|ref|YP_003534750.1|	-	0.00021	20.7	13.1	0.00021	20.7	9.1	8.4	2	2	6	8	8	7	3	Domain	of	unknown	function	(DUF4201)
Laminin_II	PF06009.7	gi|292654853|ref|YP_003534750.1|	-	0.00027	20.7	66.0	0.016	14.9	2.4	8.7	4	2	5	9	9	9	3	Laminin	Domain	II
Lebercilin	PF15619.1	gi|292654853|ref|YP_003534750.1|	-	0.00033	20.1	10.5	0.00033	20.1	7.3	6.6	2	2	2	6	6	4	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
WEMBL	PF05701.6	gi|292654853|ref|YP_003534750.1|	-	0.00061	18.3	117.4	0.0043	15.5	4.8	4.4	2	1	1	4	4	4	3	Weak	chloroplast	movement	under	blue	light
ERM	PF00769.14	gi|292654853|ref|YP_003534750.1|	-	0.00062	19.3	13.9	0.00062	19.3	9.6	6.2	2	2	3	6	6	6	1	Ezrin/radixin/moesin	family
Fib_alpha	PF08702.5	gi|292654853|ref|YP_003534750.1|	-	0.001	19.1	2.4	0.001	19.1	1.7	6.9	3	2	3	7	7	7	3	Fibrinogen	alpha/beta	chain	family
GAS	PF13851.1	gi|292654853|ref|YP_003534750.1|	-	0.0012	18.1	100.5	0.046	12.8	2.0	7.4	2	2	5	7	7	7	3	Growth-arrest	specific	micro-tubule	binding
Mnd1	PF03962.10	gi|292654853|ref|YP_003534750.1|	-	0.0013	18.3	8.1	0.0013	18.3	5.6	8.7	2	2	6	9	9	9	4	Mnd1	family
Filament	PF00038.16	gi|292654853|ref|YP_003534750.1|	-	0.0018	17.7	112.3	0.038	13.4	25.7	6.4	2	2	5	7	7	7	3	Intermediate	filament	protein
DUF1664	PF07889.7	gi|292654853|ref|YP_003534750.1|	-	0.0026	17.5	3.3	0.0026	17.5	2.3	8.6	4	3	4	9	9	8	3	Protein	of	unknown	function	(DUF1664)
TPR_MLP1_2	PF07926.7	gi|292654853|ref|YP_003534750.1|	-	0.0028	17.3	108.1	0.061	13.0	9.4	8.0	4	2	2	6	6	6	3	TPR/MLP1/MLP2-like	protein
CCDC155	PF14662.1	gi|292654853|ref|YP_003534750.1|	-	0.0035	16.9	14.0	0.0035	16.9	9.7	6.4	2	2	4	7	7	6	1	Coiled-coil	region	of	CCDC155
Tropomyosin	PF00261.15	gi|292654853|ref|YP_003534750.1|	-	0.0036	16.4	10.1	0.0036	16.4	7.0	6.0	2	2	2	4	4	2	2	Tropomyosin
ADIP	PF11559.3	gi|292654853|ref|YP_003534750.1|	-	0.0037	17.1	89.5	0.22	11.4	4.7	9.4	3	2	8	11	11	11	5	Afadin-	and	alpha	-actinin-Binding
EzrA	PF06160.7	gi|292654853|ref|YP_003534750.1|	-	0.0039	15.4	94.4	0.0079	14.4	5.2	5.2	2	2	2	4	4	4	3	Septation	ring	formation	regulator,	EzrA
Laminin_I	PF06008.9	gi|292654853|ref|YP_003534750.1|	-	0.005	16.1	84.9	0.09	12.0	7.0	7.6	2	2	3	6	6	6	3	Laminin	Domain	I
DUF724	PF05266.9	gi|292654853|ref|YP_003534750.1|	-	0.0055	16.3	9.5	0.0055	16.3	6.6	7.7	2	2	4	8	8	7	1	Protein	of	unknown	function	(DUF724)
Baculo_PEP_C	PF04513.7	gi|292654853|ref|YP_003534750.1|	-	0.0062	16.3	34.9	0.42	10.4	2.8	7.4	4	2	2	7	7	6	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Atg14	PF10186.4	gi|292654853|ref|YP_003534750.1|	-	0.0098	14.8	89.2	0.1	11.5	10.9	7.2	2	2	7	9	9	9	4	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Spectrin	PF00435.16	gi|292654853|ref|YP_003534750.1|	-	0.011	15.9	7.8	0.011	15.9	5.4	8.3	5	2	2	8	8	8	0	Spectrin	repeat
NPV_P10	PF05531.7	gi|292654853|ref|YP_003534750.1|	-	0.014	15.6	65.7	0.022	14.9	3.4	11.2	5	3	6	11	11	11	0	Nucleopolyhedrovirus	P10	protein
Snapin_Pallidin	PF14712.1	gi|292654853|ref|YP_003534750.1|	-	0.021	15.1	0.8	0.021	15.1	0.5	9.0	5	4	3	8	8	8	0	Snapin/Pallidin
Seryl_tRNA_N	PF02403.17	gi|292654853|ref|YP_003534750.1|	-	0.022	14.7	110.6	0.071	13.1	7.6	11.5	2	2	8	11	11	11	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3584	PF12128.3	gi|292654853|ref|YP_003534750.1|	-	0.03	11.6	115.3	0.024	12.0	10.9	4.7	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF3584)
FliD_N	PF02465.13	gi|292654853|ref|YP_003534750.1|	-	0.032	14.6	28.1	3.2	8.1	0.1	8.9	2	2	3	7	7	7	0	Flagellar	hook-associated	protein	2	N-terminus
bZIP_1	PF00170.16	gi|292654853|ref|YP_003534750.1|	-	0.037	14.0	0.5	0.037	14.0	0.4	12.9	9	4	5	14	14	13	0	bZIP	transcription	factor
BLOC1_2	PF10046.4	gi|292654853|ref|YP_003534750.1|	-	0.04	14.0	0.5	0.04	14.0	0.3	10.5	3	2	4	11	11	10	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF869	PF05911.6	gi|292654853|ref|YP_003534750.1|	-	0.067	11.4	94.5	0.061	11.5	7.3	5.5	2	2	1	4	4	4	0	Plant	protein	of	unknown	function	(DUF869)
DivIC	PF04977.10	gi|292654853|ref|YP_003534750.1|	-	0.68	9.4	120.3	0.12	11.9	0.7	15.4	5	2	12	17	17	17	0	Septum	formation	initiator
AAA_27	PF13514.1	gi|292654853|ref|YP_003534750.1|	-	1.7	6.2	122.5	0.036	11.7	35.8	4.3	3	2	2	5	5	5	0	AAA	domain
TMF_TATA_bd	PF12325.3	gi|292654853|ref|YP_003534750.1|	-	3	7.6	126.1	0.17	11.6	1.5	9.0	3	2	6	9	9	9	0	TATA	element	modulatory	factor	1	TATA	binding
Phage_GP20	PF06810.6	gi|292654853|ref|YP_003534750.1|	-	4.9	6.5	106.1	0.13	11.7	5.3	8.8	2	2	7	9	9	9	0	Phage	minor	structural	protein	GP20
ScpA_ScpB	PF02616.9	gi|292654854|ref|YP_003534751.1|	-	3.4e-23	82.4	0.0	7.1e-22	78.1	0.0	2.3	1	1	0	1	1	1	1	ScpA/B	protein
DUF3394	PF11874.3	gi|292654855|ref|YP_003534752.1|	-	0.04	13.4	0.0	0.045	13.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3394)
DUF4131	PF13567.1	gi|292654855|ref|YP_003534752.1|	-	0.12	11.8	1.7	0.13	11.6	1.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2387	PF09526.5	gi|292654855|ref|YP_003534752.1|	-	0.24	11.3	1.6	0.83	9.6	0.1	2.0	1	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
PNP_UDP_1	PF01048.15	gi|292654856|ref|YP_003534753.1|	-	7.6e-43	146.1	0.0	8.8e-43	145.9	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Extensin-like_C	PF06904.7	gi|292654856|ref|YP_003534753.1|	-	0.045	13.5	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	Extensin-like	protein	C-terminus
Mem_trans	PF03547.13	gi|292654857|ref|YP_003534754.1|	-	1.9e-24	85.7	16.0	5.8e-12	44.6	0.1	2.1	2	0	0	2	2	2	2	Membrane	transport	protein
Pribosyltran	PF00156.22	gi|292654858|ref|YP_003534755.1|	-	4.6e-19	68.3	0.0	6.9e-19	67.7	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|292654858|ref|YP_003534755.1|	-	0.024	13.8	0.0	0.031	13.4	0.0	1.1	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
RNHCP	PF12647.2	gi|292654859|ref|YP_003534756.1|	-	0.029	14.2	0.5	0.059	13.2	0.3	1.5	1	1	0	1	1	1	0	RNHCP	domain
zf-ribbon_3	PF13248.1	gi|292654859|ref|YP_003534756.1|	-	0.037	13.2	2.4	0.26	10.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-LITAF-like	PF10601.4	gi|292654859|ref|YP_003534756.1|	-	0.18	11.7	0.9	1.3	8.9	0.1	2.0	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
PhzC-PhzF	PF02567.11	gi|292654860|ref|YP_003534757.1|	-	1.4e-66	224.5	0.3	1.6e-66	224.4	0.2	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.14	gi|292654860|ref|YP_003534757.1|	-	1.8e-05	24.6	0.2	0.0031	17.4	0.0	2.3	2	0	0	2	2	2	2	Diaminopimelate	epimerase
PAC2	PF09754.4	gi|292654861|ref|YP_003534758.1|	-	2.9e-49	167.8	0.2	3.4e-49	167.6	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
NAD_binding_10	PF13460.1	gi|292654861|ref|YP_003534758.1|	-	0.021	14.8	0.0	0.037	14.0	0.0	1.4	1	0	0	1	1	1	0	NADH(P)-binding
Nop10p	PF04135.7	gi|292654862|ref|YP_003534759.1|	-	3.5e-21	74.6	0.9	3.9e-21	74.5	0.7	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-ribbon_3	PF13248.1	gi|292654862|ref|YP_003534759.1|	-	0.023	13.9	1.1	0.034	13.3	0.5	1.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Jun	PF03957.8	gi|292654862|ref|YP_003534759.1|	-	0.048	13.3	0.1	0.052	13.2	0.1	1.0	1	0	0	1	1	1	0	Jun-like	transcription	factor
DNA_ligase_ZBD	PF03119.11	gi|292654862|ref|YP_003534759.1|	-	0.084	12.5	0.7	0.16	11.6	0.5	1.5	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
EIF_2_alpha	PF07541.7	gi|292654863|ref|YP_003534760.1|	-	1.2e-28	99.1	0.0	2.3e-28	98.1	0.0	1.5	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|292654863|ref|YP_003534760.1|	-	2.2e-14	53.2	1.7	4.6e-14	52.2	0.4	2.1	2	0	0	2	2	2	1	S1	RNA	binding	domain
Ribosomal_S27e	PF01667.12	gi|292654864|ref|YP_003534761.1|	-	2.6e-19	68.4	0.9	3e-19	68.3	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.5	gi|292654864|ref|YP_003534761.1|	-	0.012	15.5	0.7	0.022	14.7	0.5	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|292654864|ref|YP_003534761.1|	-	0.013	14.6	1.4	0.023	13.9	1.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Baculo_ME53	PF06061.6	gi|292654864|ref|YP_003534761.1|	-	0.069	12.1	0.2	0.069	12.1	0.1	1.1	1	0	0	1	1	1	0	Baculoviridae	ME53
DUF2318	PF10080.4	gi|292654864|ref|YP_003534761.1|	-	0.096	12.4	0.4	0.12	12.1	0.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
C1_1	PF00130.17	gi|292654864|ref|YP_003534761.1|	-	0.14	11.9	0.4	0.2	11.4	0.3	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Prok-RING_1	PF14446.1	gi|292654864|ref|YP_003534761.1|	-	0.15	11.7	1.7	0.26	11.0	1.2	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Lar_restr_allev	PF14354.1	gi|292654864|ref|YP_003534761.1|	-	0.63	10.3	3.5	7.8	6.8	0.2	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Ribosomal_L44	PF00935.14	gi|292654865|ref|YP_003534762.1|	-	4.8e-26	90.5	2.7	7e-26	90.0	1.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.1	gi|292654865|ref|YP_003534762.1|	-	0.027	13.6	1.3	4	6.7	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292654865|ref|YP_003534762.1|	-	0.033	14.4	2.3	0.54	10.5	1.5	2.1	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|292654865|ref|YP_003534762.1|	-	0.034	13.4	1.6	5.5	6.4	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF2296	PF10058.4	gi|292654865|ref|YP_003534762.1|	-	0.041	13.6	0.9	1.9	8.3	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DUF1272	PF06906.6	gi|292654865|ref|YP_003534762.1|	-	0.066	13.0	0.5	1.2	9.0	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Terminase_GpA	PF05876.7	gi|292654865|ref|YP_003534762.1|	-	0.084	11.2	0.4	0.11	10.8	0.3	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
DZR	PF12773.2	gi|292654865|ref|YP_003534762.1|	-	0.1	12.4	3.1	0.72	9.7	2.1	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|292654865|ref|YP_003534762.1|	-	0.16	11.7	3.0	3	7.5	0.2	2.5	2	1	0	2	2	2	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.5	gi|292654865|ref|YP_003534762.1|	-	0.22	11.5	1.8	15	5.6	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|292654865|ref|YP_003534762.1|	-	0.23	10.9	4.2	2.9	7.4	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-B_box	PF00643.19	gi|292654865|ref|YP_003534762.1|	-	0.84	9.5	6.4	7.1	6.6	0.1	2.2	2	0	0	2	2	2	0	B-box	zinc	finger
TFIIS_C	PF01096.13	gi|292654865|ref|YP_003534762.1|	-	5.3	6.7	7.0	18	5.0	0.2	3.0	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
DUF2298	PF10060.4	gi|292654867|ref|YP_003534764.1|	-	8.7e-121	404.0	22.6	1.1e-120	403.6	15.7	1.1	1	0	0	1	1	1	1	Uncharacterized	membrane	protein	(DUF2298)
Glycos_transf_2	PF00535.21	gi|292654868|ref|YP_003534765.1|	-	7e-09	35.5	0.0	1.3e-08	34.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292654868|ref|YP_003534765.1|	-	0.0015	18.3	3.1	0.0029	17.4	2.1	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
GtrA	PF04138.9	gi|292654869|ref|YP_003534766.1|	-	5e-18	65.1	4.3	7e-18	64.6	3.0	1.2	1	0	0	1	1	1	1	GtrA-like	protein
Rieske	PF00355.21	gi|292654870|ref|YP_003534767.1|	-	4.2e-05	23.0	0.0	5.8e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Aminotran_4	PF01063.14	gi|292654871|ref|YP_003534768.1|	-	9.3e-55	185.5	0.0	1.2e-54	185.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
GATase	PF00117.23	gi|292654872|ref|YP_003534769.1|	-	8.3e-40	136.2	0.1	1e-38	132.6	0.0	2.4	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292654872|ref|YP_003534769.1|	-	4.5e-05	22.9	1.4	0.0019	17.6	1.0	2.5	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.13	gi|292654873|ref|YP_003534770.1|	-	1.4e-98	329.3	0.0	2e-98	328.8	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|292654873|ref|YP_003534770.1|	-	2.6e-13	50.1	0.1	8.7e-13	48.4	0.0	1.9	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
HHH_5	PF14520.1	gi|292654874|ref|YP_003534771.1|	-	1.1e-08	35.1	0.4	2.2e-08	34.1	0.3	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|292654874|ref|YP_003534771.1|	-	0.00046	20.1	0.0	0.0034	17.3	0.0	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|292654874|ref|YP_003534771.1|	-	0.00087	19.1	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.4	gi|292654874|ref|YP_003534771.1|	-	0.0065	16.0	0.0	0.023	14.2	0.0	1.8	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
TfoX_C	PF04994.8	gi|292654874|ref|YP_003534771.1|	-	0.07	13.0	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	TfoX	C-terminal	domain
IMS_HHH	PF11798.3	gi|292654874|ref|YP_003534771.1|	-	0.12	12.5	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	IMS	family	HHH	motif
Shikimate_DH	PF01488.15	gi|292654875|ref|YP_003534772.1|	-	2e-12	47.3	0.1	2.2e-12	47.2	0.1	1.1	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_2	PF00890.19	gi|292654875|ref|YP_003534772.1|	-	1.1e-05	24.5	4.5	1.3e-05	24.2	3.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292654875|ref|YP_003534772.1|	-	0.00022	21.1	0.3	0.00023	21.1	0.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|292654875|ref|YP_003534772.1|	-	0.00063	18.9	0.5	0.00078	18.5	0.3	1.2	1	0	0	1	1	1	1	FAD	binding	domain
IlvN	PF07991.7	gi|292654875|ref|YP_003534772.1|	-	0.00078	18.8	0.2	0.001	18.4	0.1	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|292654875|ref|YP_003534772.1|	-	0.0021	18.4	1.5	0.0034	17.7	1.0	1.3	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GIDA	PF01134.17	gi|292654875|ref|YP_003534772.1|	-	0.0029	16.5	4.8	0.0033	16.3	3.3	1.1	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_2	PF03446.10	gi|292654875|ref|YP_003534772.1|	-	0.0059	16.4	0.6	0.012	15.5	0.4	1.5	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.11	gi|292654875|ref|YP_003534772.1|	-	0.0093	15.4	1.2	0.016	14.6	0.9	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|292654875|ref|YP_003534772.1|	-	0.0095	15.6	1.0	0.012	15.2	0.7	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292654875|ref|YP_003534772.1|	-	0.0095	16.1	0.0	0.015	15.5	0.0	1.4	1	1	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|292654875|ref|YP_003534772.1|	-	0.0097	15.9	3.1	0.013	15.5	2.2	1.3	1	0	0	1	1	1	1	NADH(P)-binding
AdoHcyase_NAD	PF00670.16	gi|292654875|ref|YP_003534772.1|	-	0.016	15.0	1.5	0.022	14.5	1.0	1.2	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|292654875|ref|YP_003534772.1|	-	0.024	14.6	2.3	0.046	13.7	1.6	1.4	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Saccharop_dh	PF03435.13	gi|292654875|ref|YP_003534772.1|	-	0.025	13.5	0.2	0.029	13.3	0.2	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292654875|ref|YP_003534772.1|	-	0.026	13.6	0.2	0.037	13.1	0.2	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Zea_mays_MuDR	PF05928.6	gi|292654875|ref|YP_003534772.1|	-	0.04	13.3	4.0	0.06	12.7	2.8	1.2	1	0	0	1	1	1	0	Zea	mays	MURB-like	protein	(MuDR)
NAD_Gly3P_dh_N	PF01210.18	gi|292654875|ref|YP_003534772.1|	-	0.062	13.0	0.5	0.082	12.6	0.4	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Thi4	PF01946.12	gi|292654875|ref|YP_003534772.1|	-	0.065	12.3	0.3	0.087	11.9	0.2	1.3	1	0	0	1	1	1	0	Thi4	family
ThiF	PF00899.16	gi|292654875|ref|YP_003534772.1|	-	0.13	12.0	2.1	0.34	10.7	1.1	1.9	2	0	0	2	2	2	0	ThiF	family
Pyr_redox	PF00070.22	gi|292654875|ref|YP_003534772.1|	-	0.22	11.9	2.0	0.43	11.0	1.4	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292654875|ref|YP_003534772.1|	-	0.36	9.2	4.6	0.44	8.9	3.2	1.1	1	0	0	1	1	1	0	HI0933-like	protein
DAO	PF01266.19	gi|292654875|ref|YP_003534772.1|	-	0.38	9.6	6.8	0.38	9.6	3.8	1.7	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292654875|ref|YP_003534772.1|	-	0.57	10.2	2.6	1	9.3	1.6	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|292654875|ref|YP_003534772.1|	-	6.6	5.6	7.8	9.7	5.1	5.4	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Shikimate_dh_N	PF08501.6	gi|292654876|ref|YP_003534773.1|	-	1.7e-27	95.3	0.0	2.2e-27	94.9	0.0	1.1	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Na_Ca_ex	PF01699.19	gi|292654877|ref|YP_003534774.1|	-	2.1e-45	153.7	31.4	7.5e-25	87.1	6.5	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF3278	PF11683.3	gi|292654877|ref|YP_003534774.1|	-	0.011	15.7	0.1	5.2	7.0	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3278)
Na_Ca_ex	PF01699.19	gi|292654878|ref|YP_003534775.1|	-	6.9e-11	41.9	20.3	2.2e-05	24.0	3.8	2.5	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
FA_desaturase	PF00487.19	gi|292654878|ref|YP_003534775.1|	-	0.0065	15.9	0.2	0.0065	15.9	0.1	3.2	3	1	0	3	3	3	1	Fatty	acid	desaturase
tRNA_deacylase	PF04414.7	gi|292654879|ref|YP_003534776.1|	-	2e-62	210.1	0.0	2.6e-62	209.7	0.0	1.1	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
FtsZ_C	PF12327.3	gi|292654880|ref|YP_003534777.1|	-	2.1e-37	127.0	1.6	2.1e-37	127.0	1.1	2.4	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
Tubulin	PF00091.20	gi|292654880|ref|YP_003534777.1|	-	2.1e-36	125.7	0.7	5e-36	124.5	0.5	1.6	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
SecE	PF00584.15	gi|292654881|ref|YP_003534778.1|	-	0.036	13.6	0.1	0.044	13.3	0.1	1.2	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
DUF3317	PF11779.3	gi|292654881|ref|YP_003534778.1|	-	0.056	12.8	0.2	0.079	12.4	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3317)
Spt5-NGN	PF03439.8	gi|292654882|ref|YP_003534779.1|	-	2.9e-22	78.2	0.0	4.9e-22	77.4	0.0	1.4	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|292654882|ref|YP_003534779.1|	-	1.8e-07	30.5	1.9	2e-07	30.4	0.1	2.0	3	0	0	3	3	3	1	KOW	motif
NusG	PF02357.14	gi|292654882|ref|YP_003534779.1|	-	0.00023	21.3	0.0	0.016	15.4	0.0	2.5	1	1	0	1	1	1	1	Transcription	termination	factor	nusG
FYVE	PF01363.16	gi|292654883|ref|YP_003534780.1|	-	0.033	14.0	0.2	0.04	13.8	0.1	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
DUF4157	PF13699.1	gi|292654883|ref|YP_003534780.1|	-	0.05	13.7	0.1	0.08	13.0	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
DUF2141	PF09912.4	gi|292654883|ref|YP_003534780.1|	-	0.082	12.5	0.0	0.12	12.0	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2141)
TF_Zn_Ribbon	PF08271.7	gi|292654883|ref|YP_003534780.1|	-	0.091	12.0	0.6	0.21	10.9	0.4	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
PHP_C	PF13263.1	gi|292654884|ref|YP_003534781.1|	-	1.2e-18	66.3	0.2	2.5e-18	65.3	0.1	1.6	1	0	0	1	1	1	1	PHP-associated
DUF457	PF04307.9	gi|292654885|ref|YP_003534782.1|	-	1.9e-18	66.2	5.7	2.6e-18	65.8	3.9	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Zn_dep_PLPC	PF00882.13	gi|292654885|ref|YP_003534782.1|	-	0.00054	19.6	0.1	0.00089	18.9	0.1	1.3	1	0	0	1	1	1	1	Zinc	dependent	phospholipase	C
CinA	PF02464.12	gi|292654886|ref|YP_003534783.1|	-	2.9e-55	185.9	0.1	3.6e-55	185.6	0.1	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
ArsA_ATPase	PF02374.10	gi|292654887|ref|YP_003534784.1|	-	3.1e-75	253.0	0.0	5.3e-51	173.4	0.0	2.2	2	0	0	2	2	2	2	Anion-transporting	ATPase
CbiA	PF01656.18	gi|292654887|ref|YP_003534784.1|	-	5.8e-12	45.4	0.0	5.9e-11	42.1	0.0	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|292654887|ref|YP_003534784.1|	-	9.4e-06	25.6	0.2	0.0023	17.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|292654887|ref|YP_003534784.1|	-	0.0047	16.3	0.1	0.44	9.9	0.3	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
PhoH	PF02562.11	gi|292654887|ref|YP_003534784.1|	-	0.0055	15.9	0.0	0.012	14.8	0.0	1.5	2	0	0	2	2	2	1	PhoH-like	protein
AAA_25	PF13481.1	gi|292654887|ref|YP_003534784.1|	-	0.0059	16.0	5.2	0.027	13.8	0.2	3.1	2	1	0	3	3	3	1	AAA	domain
Fer4_NifH	PF00142.13	gi|292654887|ref|YP_003534784.1|	-	0.035	13.2	0.1	0.057	12.5	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Zeta_toxin	PF06414.7	gi|292654887|ref|YP_003534784.1|	-	0.046	12.8	0.5	0.15	11.1	0.1	1.9	2	0	0	2	2	2	0	Zeta	toxin
KaiC	PF06745.8	gi|292654887|ref|YP_003534784.1|	-	0.082	12.0	0.0	0.21	10.6	0.0	1.6	2	0	0	2	2	2	0	KaiC
YhjQ	PF06564.7	gi|292654887|ref|YP_003534784.1|	-	0.1	11.9	0.0	0.16	11.2	0.0	1.2	1	0	0	1	1	1	0	YhjQ	protein
IstB_IS21	PF01695.12	gi|292654887|ref|YP_003534784.1|	-	0.17	11.2	0.1	0.3	10.4	0.1	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
adh_short	PF00106.20	gi|292654888|ref|YP_003534785.1|	-	3.5e-33	114.8	0.0	5.1e-33	114.3	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292654888|ref|YP_003534785.1|	-	2.5e-20	73.2	0.0	3.2e-20	72.9	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|292654888|ref|YP_003534785.1|	-	5.7e-12	45.6	0.0	8.7e-12	45.0	0.0	1.3	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|292654888|ref|YP_003534785.1|	-	1.7e-07	31.3	0.1	2.8e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	NADH(P)-binding
DUF1776	PF08643.5	gi|292654888|ref|YP_003534785.1|	-	2.7e-06	26.7	0.0	9.2e-06	24.9	0.0	1.7	2	0	0	2	2	2	1	Fungal	family	of	unknown	function	(DUF1776)
Epimerase	PF01370.16	gi|292654888|ref|YP_003534785.1|	-	4.1e-05	23.1	0.0	0.00022	20.7	0.0	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|292654888|ref|YP_003534785.1|	-	0.00074	18.4	0.0	0.0013	17.7	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|292654888|ref|YP_003534785.1|	-	0.0088	15.8	0.0	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
TrkA_N	PF02254.13	gi|292654888|ref|YP_003534785.1|	-	0.099	12.6	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Endonuclease_5	PF04493.9	gi|292654889|ref|YP_003534786.1|	-	3.5e-45	153.9	0.0	4.8e-45	153.4	0.0	1.2	1	0	0	1	1	1	1	Endonuclease	V
Rhomboid	PF01694.17	gi|292654890|ref|YP_003534787.1|	-	6.1e-28	97.6	20.3	6.1e-28	97.6	14.1	1.7	1	1	1	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.11	gi|292654890|ref|YP_003534787.1|	-	1.2e-14	53.8	4.0	1.6e-14	53.4	2.8	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.5	gi|292654890|ref|YP_003534787.1|	-	1.4e-05	25.3	1.1	1.4e-05	25.3	0.7	2.2	3	0	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
zf-HIT	PF04438.11	gi|292654890|ref|YP_003534787.1|	-	0.0011	18.5	4.0	0.0016	18.0	2.8	1.2	1	0	0	1	1	1	1	HIT	zinc	finger
DUF3681	PF12442.3	gi|292654890|ref|YP_003534787.1|	-	0.15	12.2	6.5	0.24	11.6	1.8	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3681)
zf-MYND	PF01753.13	gi|292654890|ref|YP_003534787.1|	-	0.28	11.0	4.4	0.43	10.5	3.1	1.2	1	0	0	1	1	1	0	MYND	finger
C1_3	PF07649.7	gi|292654890|ref|YP_003534787.1|	-	0.93	9.5	5.3	1.7	8.7	3.7	1.4	1	0	0	1	1	1	0	C1-like	domain
Pyrophosphatase	PF00719.14	gi|292654892|ref|YP_003534789.1|	-	4e-56	188.8	1.9	4.5e-56	188.6	1.3	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
PadR	PF03551.9	gi|292654893|ref|YP_003534790.1|	-	2e-17	62.6	0.3	2.7e-17	62.2	0.2	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|292654893|ref|YP_003534790.1|	-	1.5e-05	25.2	0.0	3.1e-05	24.1	0.0	1.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|292654893|ref|YP_003534790.1|	-	0.0045	16.7	0.0	0.0076	16.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|292654893|ref|YP_003534790.1|	-	0.017	14.8	0.0	0.026	14.2	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
FUR	PF01475.14	gi|292654893|ref|YP_003534790.1|	-	0.047	13.6	0.0	0.065	13.1	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF4364	PF14277.1	gi|292654893|ref|YP_003534790.1|	-	0.096	12.3	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
RVT_3	PF13456.1	gi|292654895|ref|YP_003534792.1|	-	7.7e-22	76.8	0.0	1.1e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.19	gi|292654895|ref|YP_003534792.1|	-	1.4e-15	57.8	0.0	1.9e-15	57.3	0.0	1.2	1	0	0	1	1	1	1	RNase	H
TFIIB	PF00382.14	gi|292654896|ref|YP_003534793.1|	-	3.1e-47	158.2	2.6	2.7e-24	84.7	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292654896|ref|YP_003534793.1|	-	5.6e-05	22.3	0.1	0.00011	21.4	0.1	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_23	PF13384.1	gi|292654896|ref|YP_003534793.1|	-	0.0058	16.2	0.5	0.36	10.5	0.1	3.3	3	0	0	3	3	3	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|292654896|ref|YP_003534793.1|	-	0.017	14.4	1.4	0.18	11.1	0.1	3.2	2	1	1	3	3	3	0	Sigma-70,	region	4
Cyclin_N	PF00134.18	gi|292654896|ref|YP_003534793.1|	-	0.033	13.7	0.0	0.092	12.3	0.0	1.8	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
Cyclin_C	PF02984.14	gi|292654896|ref|YP_003534793.1|	-	0.077	12.9	0.0	0.63	9.9	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_3	PF01381.17	gi|292654896|ref|YP_003534793.1|	-	0.096	12.5	0.3	3.6	7.5	0.0	3.1	3	0	0	3	3	3	0	Helix-turn-helix
TrmB	PF01978.14	gi|292654896|ref|YP_003534793.1|	-	0.63	9.7	4.0	3.4	7.4	0.1	3.1	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
DUF650	PF04894.7	gi|292654897|ref|YP_003534794.1|	-	4e-99	331.5	0.0	4.8e-99	331.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|292654897|ref|YP_003534794.1|	-	4e-34	116.5	0.0	6.4e-34	115.8	0.0	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
DUF302	PF03625.9	gi|292654899|ref|YP_003534796.1|	-	1.4e-17	62.9	0.0	2.1e-17	62.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Abi	PF02517.11	gi|292654900|ref|YP_003534797.1|	-	1.2e-07	31.7	1.4	6.9e-07	29.3	1.0	2.2	1	1	0	1	1	1	1	CAAX	protease	self-immunity
UCR_Fe-S_N	PF10399.4	gi|292654900|ref|YP_003534797.1|	-	0.52	9.5	2.5	0.9	8.7	1.1	1.8	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Virul_fac_BrkB	PF03631.10	gi|292654902|ref|YP_003534799.1|	-	0.0006	19.2	3.1	0.0006	19.2	2.1	1.7	1	1	1	2	2	2	1	Virulence	factor	BrkB
DUF3040	PF11239.3	gi|292654902|ref|YP_003534799.1|	-	0.28	11.2	12.1	19	5.3	7.5	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
Mut7-C	PF01927.11	gi|292654903|ref|YP_003534800.1|	-	3.9e-41	140.4	0.0	4.7e-41	140.1	0.0	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF4379	PF14311.1	gi|292654903|ref|YP_003534800.1|	-	0.081	12.7	0.1	0.17	11.7	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4379)
DNA_pol_B_thumb	PF14791.1	gi|292654904|ref|YP_003534801.1|	-	4.5e-23	80.7	0.0	1.2e-22	79.3	0.0	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.1	gi|292654904|ref|YP_003534801.1|	-	1.6e-19	69.8	2.9	1.6e-16	60.2	0.4	3.5	3	0	0	3	3	3	2	Helix-hairpin-helix	domain
HHH_5	PF14520.1	gi|292654904|ref|YP_003534801.1|	-	1.2e-18	66.9	5.0	2.8e-10	40.2	0.3	3.2	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
PHP	PF02811.14	gi|292654904|ref|YP_003534801.1|	-	1.3e-17	64.1	0.0	8e-17	61.5	0.0	2.1	2	0	0	2	2	2	1	PHP	domain
HHH_2	PF12826.2	gi|292654904|ref|YP_003534801.1|	-	8.3e-08	32.0	0.8	0.00018	21.3	0.0	2.8	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|292654904|ref|YP_003534801.1|	-	0.00086	18.8	0.2	0.0033	16.9	0.0	2.1	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.18	gi|292654904|ref|YP_003534801.1|	-	0.0019	17.8	2.9	0.0033	17.0	0.1	3.0	3	1	0	3	3	3	1	Helix-hairpin-helix	motif
DNA_pol_B_palm	PF14792.1	gi|292654904|ref|YP_003534801.1|	-	0.01	15.8	0.1	0.056	13.5	0.0	2.2	3	0	0	3	3	3	0	DNA	polymerase	beta	palm
HHH_3	PF12836.2	gi|292654904|ref|YP_003534801.1|	-	0.014	15.3	0.1	1.1	9.2	0.0	3.1	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
DUF3983	PF13137.1	gi|292654905|ref|YP_003534802.1|	-	0.059	13.0	0.2	0.059	13.0	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3983)
Phosphodiest	PF01663.17	gi|292654906|ref|YP_003534803.1|	-	1.6e-58	198.8	0.1	1.8e-58	198.6	0.1	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.4	gi|292654906|ref|YP_003534803.1|	-	0.037	14.0	0.4	0.083	12.8	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2063)
Sulfatase	PF00884.18	gi|292654906|ref|YP_003534803.1|	-	0.04	13.0	2.5	0.16	11.1	0.4	2.3	2	0	0	2	2	2	0	Sulfatase
Metalloenzyme	PF01676.13	gi|292654906|ref|YP_003534803.1|	-	0.08	12.3	0.0	0.25	10.6	0.0	1.8	2	0	0	2	2	2	0	Metalloenzyme	superfamily
GCS2	PF04107.8	gi|292654907|ref|YP_003534804.1|	-	6.7e-12	45.0	0.2	9.7e-12	44.5	0.1	1.2	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Tubulin	PF00091.20	gi|292654908|ref|YP_003534805.1|	-	3e-23	82.7	0.6	8.4e-23	81.3	0.2	1.9	2	1	0	2	2	2	1	Tubulin/FtsZ	family,	GTPase	domain
Dynamitin	PF04912.9	gi|292654909|ref|YP_003534806.1|	-	0.0055	15.5	0.1	0.0077	15.0	0.0	1.3	1	0	0	1	1	1	1	Dynamitin
Angiomotin_C	PF12240.3	gi|292654909|ref|YP_003534806.1|	-	0.0084	15.6	0.2	0.012	15.1	0.1	1.4	1	0	0	1	1	1	1	Angiomotin	C	terminal
XhlA	PF10779.4	gi|292654909|ref|YP_003534806.1|	-	0.028	14.3	0.2	0.066	13.1	0.0	1.7	2	0	0	2	2	2	0	Haemolysin	XhlA
Reo_sigmaC	PF04582.7	gi|292654909|ref|YP_003534806.1|	-	0.043	12.9	1.2	0.088	11.9	0.3	1.3	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
CorA	PF01544.13	gi|292654909|ref|YP_003534806.1|	-	0.046	12.7	0.8	0.058	12.4	0.6	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
BLOC1_2	PF10046.4	gi|292654909|ref|YP_003534806.1|	-	0.078	13.1	0.6	0.48	10.5	0.1	2.1	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
NPV_P10	PF05531.7	gi|292654909|ref|YP_003534806.1|	-	0.08	13.2	0.1	0.38	11.0	0.0	1.9	1	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF837	PF05769.6	gi|292654909|ref|YP_003534806.1|	-	0.12	11.8	0.4	0.16	11.4	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF837)
DUF1515	PF07439.6	gi|292654909|ref|YP_003534806.1|	-	0.12	12.1	0.8	0.24	11.2	0.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
IncA	PF04156.9	gi|292654909|ref|YP_003534806.1|	-	0.14	11.7	0.1	0.19	11.2	0.1	1.2	1	0	0	1	1	1	0	IncA	protein
Baculo_PEP_C	PF04513.7	gi|292654909|ref|YP_003534806.1|	-	0.15	11.9	0.2	0.21	11.4	0.1	1.3	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
EzrA	PF06160.7	gi|292654909|ref|YP_003534806.1|	-	0.15	10.2	0.0	0.19	9.8	0.0	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Fmp27_WPPW	PF10359.4	gi|292654909|ref|YP_003534806.1|	-	0.2	10.0	0.0	0.22	9.8	0.0	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
FUSC	PF04632.7	gi|292654909|ref|YP_003534806.1|	-	6.3	5.0	10.2	6.4	5.0	7.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
T2SE	PF00437.15	gi|292654911|ref|YP_003534808.1|	-	9.4e-30	103.4	0.0	1.5e-29	102.7	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_33	PF13671.1	gi|292654911|ref|YP_003534808.1|	-	0.016	15.0	0.5	0.96	9.3	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
ABC_tran	PF00005.22	gi|292654911|ref|YP_003534808.1|	-	0.017	15.4	0.0	0.026	14.8	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
FtsK_SpoIIIE	PF01580.13	gi|292654911|ref|YP_003534808.1|	-	0.023	14.1	0.0	0.053	12.9	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Zeta_toxin	PF06414.7	gi|292654911|ref|YP_003534808.1|	-	0.11	11.5	0.0	0.2	10.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
KAP_NTPase	PF07693.9	gi|292654911|ref|YP_003534808.1|	-	0.34	9.8	0.0	0.94	8.3	0.0	1.6	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_16	PF13191.1	gi|292654911|ref|YP_003534808.1|	-	0.62	10.0	8.5	0.15	12.0	0.2	3.4	2	2	1	3	3	3	0	AAA	ATPase	domain
RHS_repeat	PF05593.9	gi|292654911|ref|YP_003534808.1|	-	7.9	6.7	10.7	6.4	7.0	0.1	3.7	3	0	0	3	3	3	0	RHS	Repeat
plasmid_Toxin	PF12703.2	gi|292654912|ref|YP_003534809.1|	-	0.091	12.5	0.2	0.27	11.0	0.1	1.8	1	0	0	1	1	1	0	Toxin	of	toxin-antitoxin	type	1	system
NAD_binding_10	PF13460.1	gi|292654918|ref|YP_003534815.1|	-	1.2e-20	74.2	1.9	1.8e-20	73.6	1.3	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292654918|ref|YP_003534815.1|	-	1.1e-14	54.5	0.0	1.4e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292654918|ref|YP_003534815.1|	-	2.7e-10	39.4	0.0	3.4e-09	35.8	0.0	2.0	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.13	gi|292654918|ref|YP_003534815.1|	-	2.8e-07	30.5	0.6	7.8e-07	29.1	0.2	1.9	2	0	0	2	2	2	1	TrkA-N	domain
F420_oxidored	PF03807.12	gi|292654918|ref|YP_003534815.1|	-	3.7e-05	24.0	0.1	0.00011	22.5	0.0	1.8	2	0	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|292654918|ref|YP_003534815.1|	-	4.5e-05	22.9	0.1	8.2e-05	22.0	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|292654918|ref|YP_003534815.1|	-	0.00014	22.1	0.2	0.00035	20.8	0.2	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|292654918|ref|YP_003534815.1|	-	0.0014	18.1	0.0	0.0034	16.8	0.0	1.6	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.10	gi|292654918|ref|YP_003534815.1|	-	0.0016	18.2	0.1	0.0027	17.5	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NmrA	PF05368.8	gi|292654918|ref|YP_003534815.1|	-	0.0019	17.4	0.3	0.0034	16.6	0.2	1.4	1	0	0	1	1	1	1	NmrA-like	family
3HCDH_N	PF02737.13	gi|292654918|ref|YP_003534815.1|	-	0.0049	16.5	0.3	0.0093	15.6	0.2	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.19	gi|292654918|ref|YP_003534815.1|	-	0.013	15.8	0.1	0.028	14.7	0.1	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|292654918|ref|YP_003534815.1|	-	0.034	14.0	2.5	0.075	12.9	1.1	2.0	1	1	0	1	1	1	0	short	chain	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292654918|ref|YP_003534815.1|	-	0.036	13.6	0.3	0.059	12.9	0.2	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Saccharop_dh	PF03435.13	gi|292654918|ref|YP_003534815.1|	-	0.044	12.7	0.7	0.071	12.0	0.5	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|292654918|ref|YP_003534815.1|	-	0.062	13.0	0.0	0.096	12.4	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GFO_IDH_MocA	PF01408.17	gi|292654918|ref|YP_003534815.1|	-	0.16	12.4	0.1	0.37	11.3	0.1	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DAO	PF01266.19	gi|292654918|ref|YP_003534815.1|	-	0.28	10.0	5.5	0.34	9.7	0.6	2.7	2	1	1	3	3	3	0	FAD	dependent	oxidoreductase
DHH	PF01368.15	gi|292654919|ref|YP_003534816.1|	-	2e-14	53.4	0.0	2.8e-14	53.0	0.0	1.2	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|292654919|ref|YP_003534816.1|	-	1.2e-06	28.1	0.3	3.2e-06	26.7	0.2	1.7	1	0	0	1	1	1	1	DHHA1	domain
Aldo_ket_red	PF00248.16	gi|292654920|ref|YP_003534817.1|	-	7.4e-32	110.2	0.0	3.3e-31	108.1	0.0	1.8	1	1	0	1	1	1	1	Aldo/keto	reductase	family
zinc_ribbon_2	PF13240.1	gi|292654921|ref|YP_003534818.1|	-	0.00084	18.7	0.4	0.069	12.6	0.3	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
YhfH	PF14149.1	gi|292654921|ref|YP_003534818.1|	-	0.0033	17.1	0.7	0.64	9.8	0.1	2.2	2	0	0	2	2	2	1	YhfH-like	protein
FYVE	PF01363.16	gi|292654921|ref|YP_003534818.1|	-	0.0049	16.7	0.6	0.0059	16.4	0.4	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
zf-IS66	PF13005.2	gi|292654921|ref|YP_003534818.1|	-	0.0051	16.7	0.3	2.1	8.3	0.0	2.1	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
ADK_lid	PF05191.9	gi|292654921|ref|YP_003534818.1|	-	0.0057	16.2	1.0	1.6	8.4	0.0	2.3	2	0	0	2	2	2	1	Adenylate	kinase,	active	site	lid
zf-dskA_traR	PF01258.12	gi|292654921|ref|YP_003534818.1|	-	0.0061	16.2	3.9	0.49	10.1	0.4	2.2	2	0	0	2	2	2	2	Prokaryotic	dksA/traR	C4-type	zinc	finger
UPF0547	PF10571.4	gi|292654921|ref|YP_003534818.1|	-	0.0078	15.8	0.8	0.9	9.2	0.1	2.1	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|292654921|ref|YP_003534818.1|	-	0.015	15.1	1.5	0.035	13.9	1.0	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.7	gi|292654921|ref|YP_003534818.1|	-	0.016	14.9	1.7	0.39	10.5	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|292654921|ref|YP_003534818.1|	-	0.021	14.0	2.7	0.059	12.5	1.9	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
NinF	PF05810.7	gi|292654921|ref|YP_003534818.1|	-	0.04	13.7	0.3	0.074	12.8	0.2	1.4	1	1	0	1	1	1	0	NinF	protein
Zn_ribbon_recom	PF13408.1	gi|292654921|ref|YP_003534818.1|	-	0.043	14.0	0.5	1.6	9.0	0.0	2.3	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292654921|ref|YP_003534818.1|	-	0.053	13.1	1.7	0.13	11.9	1.2	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_5	PF13719.1	gi|292654921|ref|YP_003534818.1|	-	0.056	13.0	0.3	2.1	7.9	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|292654921|ref|YP_003534818.1|	-	0.057	12.8	1.1	2.1	7.8	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292654921|ref|YP_003534818.1|	-	0.059	13.0	0.3	2	8.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
GATA	PF00320.22	gi|292654921|ref|YP_003534818.1|	-	0.059	12.7	2.0	3.4	7.0	0.1	2.2	1	1	1	2	2	2	0	GATA	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|292654921|ref|YP_003534818.1|	-	0.07	12.4	4.6	0.55	9.6	0.5	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF1451	PF07295.6	gi|292654921|ref|YP_003534818.1|	-	0.076	12.7	0.2	0.09	12.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
TFIIS_C	PF01096.13	gi|292654921|ref|YP_003534818.1|	-	0.081	12.5	0.8	3.5	7.3	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-trcl	PF13451.1	gi|292654921|ref|YP_003534818.1|	-	0.083	12.5	0.9	9.4	5.9	0.1	2.3	2	0	0	2	2	2	0	Probable	zinc-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|292654921|ref|YP_003534818.1|	-	0.096	12.1	1.8	7.9	6.0	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Nudix_N_2	PF14803.1	gi|292654921|ref|YP_003534818.1|	-	0.11	12.2	3.1	1	9.0	2.3	2.0	1	1	2	3	3	3	0	Nudix	N-terminal
HypA	PF01155.14	gi|292654921|ref|YP_003534818.1|	-	0.12	12.0	0.3	0.12	12.0	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Chordopox_RPO7	PF05864.7	gi|292654921|ref|YP_003534818.1|	-	0.12	12.4	0.6	9.3	6.4	0.0	2.1	2	0	0	2	2	2	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
IBR	PF01485.16	gi|292654921|ref|YP_003534818.1|	-	0.18	11.7	2.4	1.6	8.6	1.6	2.0	1	1	0	1	1	1	0	IBR	domain
zf-C2H2_3	PF13878.1	gi|292654921|ref|YP_003534818.1|	-	0.18	11.3	2.9	1.4	8.5	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Prok-RING_1	PF14446.1	gi|292654921|ref|YP_003534818.1|	-	0.29	10.8	3.4	0.86	9.3	2.3	1.7	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
LIM	PF00412.17	gi|292654921|ref|YP_003534818.1|	-	0.31	11.1	2.5	2.2	8.4	1.8	2.0	1	1	0	1	1	1	0	LIM	domain
zf-C2H2	PF00096.21	gi|292654921|ref|YP_003534818.1|	-	0.42	11.0	1.9	10	6.7	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn-ribbon_8	PF09723.5	gi|292654921|ref|YP_003534818.1|	-	0.42	10.6	3.1	6.3	6.8	0.3	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|292654921|ref|YP_003534818.1|	-	0.91	9.5	2.9	11	6.0	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
MFS_1	PF07690.11	gi|292654922|ref|YP_003534819.1|	-	9e-32	110.1	52.3	2.1e-23	82.6	18.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF2422	PF10337.4	gi|292654922|ref|YP_003534819.1|	-	1.8	7.3	6.6	0.64	8.7	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2422)
UPF0444	PF15475.1	gi|292654922|ref|YP_003534819.1|	-	4.8	7.3	10.7	0.92	9.5	4.0	2.5	2	0	0	2	2	2	0	Transmembrane	protein	C12orf23,	UPF0444
Spo0A_C	PF08769.6	gi|292654924|ref|YP_003534821.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	Sporulation	initiation	factor	Spo0A	C	terminal
NUDIX	PF00293.23	gi|292654925|ref|YP_003534822.1|	-	8.8e-19	67.4	0.1	1.1e-18	67.1	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
DoxX	PF07681.7	gi|292654926|ref|YP_003534823.1|	-	1.2e-07	32.0	12.7	1.2e-07	32.0	8.8	2.0	2	1	0	2	2	2	1	DoxX
DoxD	PF04173.8	gi|292654926|ref|YP_003534823.1|	-	0.00017	21.2	3.1	0.00024	20.8	2.2	1.2	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
MauE	PF07291.6	gi|292654926|ref|YP_003534823.1|	-	0.04	13.5	1.7	0.056	13.0	0.5	1.6	1	1	1	2	2	2	0	Methylamine	utilisation	protein	MauE
Bac_luciferase	PF00296.15	gi|292654927|ref|YP_003534824.1|	-	0.0037	16.4	8.2	0.0077	15.3	5.7	1.5	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
DAO	PF01266.19	gi|292654928|ref|YP_003534825.1|	-	1.9e-59	201.3	11.8	2.2e-59	201.1	8.2	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292654928|ref|YP_003534825.1|	-	7.6e-07	29.2	0.9	0.00029	20.7	0.5	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292654928|ref|YP_003534825.1|	-	9.2e-07	28.0	4.8	1.5e-06	27.3	3.3	1.4	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292654928|ref|YP_003534825.1|	-	3.2e-06	27.0	1.1	9.3e-06	25.5	0.8	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|292654928|ref|YP_003534825.1|	-	2.3e-05	23.5	0.1	5e-05	22.5	0.1	1.5	1	0	0	1	1	1	1	Thi4	family
HI0933_like	PF03486.9	gi|292654928|ref|YP_003534825.1|	-	3e-05	22.6	0.1	0.0004	18.9	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.22	gi|292654928|ref|YP_003534825.1|	-	6.1e-05	23.3	0.4	0.00024	21.4	0.1	2.1	3	0	0	3	3	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292654928|ref|YP_003534825.1|	-	0.00058	19.9	0.4	0.0012	18.9	0.3	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|292654928|ref|YP_003534825.1|	-	0.00061	19.2	0.2	0.0012	18.3	0.1	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|292654928|ref|YP_003534825.1|	-	0.00061	18.9	0.7	0.00099	18.2	0.5	1.3	1	0	0	1	1	1	1	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292654928|ref|YP_003534825.1|	-	0.00069	19.0	0.0	0.001	18.4	0.0	1.2	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|292654928|ref|YP_003534825.1|	-	0.0034	17.0	0.3	0.0062	16.2	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292654928|ref|YP_003534825.1|	-	0.0042	17.3	0.1	0.011	16.0	0.0	1.7	2	0	0	2	2	1	1	Putative	NAD(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|292654928|ref|YP_003534825.1|	-	0.0044	16.7	0.2	0.0073	16.0	0.1	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GIDA	PF01134.17	gi|292654928|ref|YP_003534825.1|	-	0.0099	14.7	0.5	0.013	14.3	0.3	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
ThiF	PF00899.16	gi|292654928|ref|YP_003534825.1|	-	0.014	15.2	0.1	0.043	13.6	0.1	1.9	1	0	0	1	1	1	0	ThiF	family
NAD_binding_9	PF13454.1	gi|292654928|ref|YP_003534825.1|	-	0.019	14.7	5.0	0.037	13.8	0.1	2.6	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FAD_oxidored	PF12831.2	gi|292654928|ref|YP_003534825.1|	-	0.049	12.7	2.4	0.096	11.7	1.3	1.8	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Ldh_1_N	PF00056.18	gi|292654928|ref|YP_003534825.1|	-	0.072	12.9	0.4	0.4	10.5	0.0	2.0	2	0	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
HSP20	PF00011.16	gi|292654929|ref|YP_003534826.1|	-	3e-05	23.8	0.0	5.5e-05	22.9	0.0	1.5	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
zf-Di19	PF05605.7	gi|292654930|ref|YP_003534827.1|	-	0.029	14.4	0.4	0.042	13.9	0.0	1.5	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_CPXG	PF14255.1	gi|292654930|ref|YP_003534827.1|	-	0.033	14.0	0.8	0.087	12.6	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
PyrI_C	PF02748.10	gi|292654930|ref|YP_003534827.1|	-	0.15	11.5	0.9	6.5	6.2	0.0	2.1	2	0	0	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Radical_SAM	PF04055.16	gi|292654931|ref|YP_003534828.1|	-	7e-16	58.8	0.1	2.6e-15	56.9	0.0	2.0	1	1	0	1	1	1	1	Radical	SAM	superfamily
HHH	PF00633.18	gi|292654931|ref|YP_003534828.1|	-	6.7e-07	28.6	0.0	2.4e-06	26.9	0.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|292654931|ref|YP_003534828.1|	-	0.00052	19.9	0.0	0.0017	18.2	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|292654931|ref|YP_003534828.1|	-	0.001	19.1	0.0	0.0045	17.1	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
PsbU	PF06514.6	gi|292654931|ref|YP_003534828.1|	-	0.007	16.1	0.0	0.022	14.5	0.0	1.9	1	0	0	1	1	1	1	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HHH_2	PF12826.2	gi|292654931|ref|YP_003534828.1|	-	0.11	12.4	0.0	0.3	11.0	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
TRAM	PF01938.15	gi|292654932|ref|YP_003534829.1|	-	4.2e-15	55.2	5.2	5.9e-15	54.8	2.5	1.9	2	0	0	2	2	2	1	TRAM	domain
CxxCxxCC	PF03692.10	gi|292654933|ref|YP_003534830.1|	-	1.3e-13	51.2	0.4	2.3e-13	50.3	0.3	1.4	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
HIPIP	PF01355.12	gi|292654933|ref|YP_003534830.1|	-	0.0068	16.4	2.4	0.016	15.3	0.3	2.2	2	0	0	2	2	2	1	High	potential	iron-sulfur	protein
LRV_FeS	PF05484.6	gi|292654933|ref|YP_003534830.1|	-	8.8	5.9	8.0	0.17	11.4	0.3	2.0	2	0	0	2	2	2	0	LRV	protein	FeS4	cluster
Lactamase_B	PF00753.22	gi|292654934|ref|YP_003534831.1|	-	9.6e-17	61.2	9.1	2.1e-16	60.1	6.3	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292654934|ref|YP_003534831.1|	-	7.1e-05	22.4	0.0	7.8e-05	22.2	0.0	1.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF1442	PF07279.6	gi|292654934|ref|YP_003534831.1|	-	0.0012	17.9	0.0	0.0022	17.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1442)
Lactamase_B_3	PF13483.1	gi|292654934|ref|YP_003534831.1|	-	0.0035	17.0	0.0	0.0058	16.3	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
HTH_24	PF13412.1	gi|292654935|ref|YP_003534832.1|	-	1.3e-05	24.4	0.1	3e-05	23.3	0.0	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292654935|ref|YP_003534832.1|	-	0.0004	20.0	0.1	0.00054	19.5	0.1	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|292654935|ref|YP_003534832.1|	-	0.00064	19.1	0.4	0.001	18.4	0.2	1.4	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.2	gi|292654935|ref|YP_003534832.1|	-	0.00072	19.3	0.3	0.0014	18.3	0.2	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_12	PF08461.5	gi|292654935|ref|YP_003534832.1|	-	0.0027	17.4	0.4	0.014	15.0	0.1	2.2	1	1	1	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.1	gi|292654935|ref|YP_003534832.1|	-	0.0053	17.0	0.0	0.0081	16.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_36	PF13730.1	gi|292654935|ref|YP_003534832.1|	-	0.0079	16.3	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|292654935|ref|YP_003534832.1|	-	0.011	15.2	0.0	0.013	14.9	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
TrmB	PF01978.14	gi|292654935|ref|YP_003534832.1|	-	0.036	13.7	0.0	0.051	13.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292654935|ref|YP_003534832.1|	-	0.038	13.6	0.0	0.054	13.2	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|292654935|ref|YP_003534832.1|	-	0.13	12.3	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_AsnC-type	PF13404.1	gi|292654935|ref|YP_003534832.1|	-	0.26	10.8	1.0	2.7	7.5	0.1	2.2	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Methyltransf_11	PF08241.7	gi|292654936|ref|YP_003534833.1|	-	1.3e-21	76.9	0.0	2.1e-21	76.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292654936|ref|YP_003534833.1|	-	4.6e-17	61.9	0.0	6.4e-17	61.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292654936|ref|YP_003534833.1|	-	1.9e-16	60.6	0.1	4.1e-16	59.5	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292654936|ref|YP_003534833.1|	-	4.6e-16	58.9	0.0	6.9e-16	58.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292654936|ref|YP_003534833.1|	-	1.7e-15	57.1	0.1	3.5e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292654936|ref|YP_003534833.1|	-	3.8e-15	55.6	0.0	6.3e-15	54.9	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|292654936|ref|YP_003534833.1|	-	8.6e-13	48.6	0.0	1.5e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292654936|ref|YP_003534833.1|	-	1.8e-12	47.2	0.5	3.2e-12	46.4	0.4	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|292654936|ref|YP_003534833.1|	-	9.2e-09	35.1	0.0	4.7e-08	32.8	0.0	2.1	3	0	0	3	3	3	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_9	PF08003.6	gi|292654936|ref|YP_003534833.1|	-	7.2e-07	28.2	0.0	1e-06	27.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.9	gi|292654936|ref|YP_003534833.1|	-	1.4e-06	27.8	0.0	3.8e-06	26.3	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_3	PF01596.12	gi|292654936|ref|YP_003534833.1|	-	2.6e-05	23.3	0.0	3.8e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
RrnaAD	PF00398.15	gi|292654936|ref|YP_003534833.1|	-	0.00015	20.9	0.0	0.00019	20.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_15	PF09445.5	gi|292654936|ref|YP_003534833.1|	-	0.00043	19.8	0.0	0.00055	19.5	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_4	PF02390.12	gi|292654936|ref|YP_003534833.1|	-	0.00064	18.8	0.0	0.0009	18.3	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
CMAS	PF02353.15	gi|292654936|ref|YP_003534833.1|	-	0.00068	18.7	0.0	0.00094	18.3	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
FmrO	PF07091.6	gi|292654936|ref|YP_003534833.1|	-	0.0026	16.7	0.0	0.004	16.1	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
MetW	PF07021.7	gi|292654936|ref|YP_003534833.1|	-	0.0032	16.8	0.0	0.0082	15.5	0.0	1.6	2	0	0	2	2	2	1	Methionine	biosynthesis	protein	MetW
tRNA_U5-meth_tr	PF05958.6	gi|292654936|ref|YP_003534833.1|	-	0.0081	14.8	0.0	0.011	14.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_32	PF13679.1	gi|292654936|ref|YP_003534833.1|	-	0.0084	15.7	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_20	PF12147.3	gi|292654936|ref|YP_003534833.1|	-	0.0085	14.9	0.0	0.013	14.4	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
TehB	PF03848.9	gi|292654936|ref|YP_003534833.1|	-	0.02	14.0	0.0	0.031	13.4	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
PCMT	PF01135.14	gi|292654936|ref|YP_003534833.1|	-	0.021	14.3	0.0	0.031	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.6	gi|292654936|ref|YP_003534833.1|	-	0.027	13.8	0.0	0.035	13.4	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
FtsJ	PF01728.14	gi|292654936|ref|YP_003534833.1|	-	0.032	14.2	0.0	0.043	13.8	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
TPMT	PF05724.6	gi|292654936|ref|YP_003534833.1|	-	0.057	12.8	0.0	0.086	12.2	0.0	1.3	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
DUF938	PF06080.7	gi|292654936|ref|YP_003534833.1|	-	0.077	12.5	0.0	0.18	11.3	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
Methyltrans_SAM	PF10672.4	gi|292654936|ref|YP_003534833.1|	-	0.12	11.1	0.0	0.17	10.7	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine-dependent	methyltransferase
Glycos_transf_2	PF00535.21	gi|292654937|ref|YP_003534834.1|	-	4.9e-15	55.6	0.0	3.9e-14	52.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292654937|ref|YP_003534834.1|	-	1.1e-07	31.8	1.2	5.6e-07	29.5	0.7	2.1	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_transf_7C	PF02709.9	gi|292654937|ref|YP_003534834.1|	-	0.084	12.3	0.1	5.7	6.4	0.0	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	galactosyltransferase
Amidohydro_2	PF04909.9	gi|292654938|ref|YP_003534835.1|	-	5.2e-16	59.0	1.9	7.8e-16	58.4	1.3	1.2	1	1	0	1	1	1	1	Amidohydrolase
HTH_10	PF04967.7	gi|292654939|ref|YP_003534836.1|	-	7.6e-15	54.2	0.6	1.2e-14	53.6	0.4	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|292654939|ref|YP_003534836.1|	-	4e-05	23.0	0.8	9.1e-05	21.9	0.4	1.8	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|292654939|ref|YP_003534836.1|	-	7.3e-05	22.0	0.5	0.00014	21.0	0.3	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_28	PF13518.1	gi|292654939|ref|YP_003534836.1|	-	0.00028	20.8	1.1	0.024	14.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292654939|ref|YP_003534836.1|	-	0.002	17.4	0.0	0.0044	16.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292654939|ref|YP_003534836.1|	-	0.004	16.7	0.6	0.011	15.3	0.1	2.0	2	0	0	2	2	2	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|292654939|ref|YP_003534836.1|	-	0.015	14.7	0.3	0.037	13.4	0.2	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.7	gi|292654939|ref|YP_003534836.1|	-	0.035	13.7	0.0	0.075	12.6	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_30	PF13556.1	gi|292654939|ref|YP_003534836.1|	-	0.12	11.9	0.5	0.23	11.0	0.4	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
DnaJ	PF00226.26	gi|292654939|ref|YP_003534836.1|	-	0.12	12.1	0.1	0.25	11.1	0.1	1.5	1	0	0	1	1	1	0	DnaJ	domain
UPF0122	PF04297.9	gi|292654939|ref|YP_003534836.1|	-	0.14	12.1	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_23	PF13384.1	gi|292654939|ref|YP_003534836.1|	-	0.2	11.3	0.1	0.2	11.3	0.0	2.4	2	1	0	2	2	2	0	Homeodomain-like	domain
Cpn60_TCP1	PF00118.19	gi|292654941|ref|YP_003534838.1|	-	8.3e-147	489.6	3.4	9.5e-147	489.5	2.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Nitro_FeMo-Co	PF02579.12	gi|292654941|ref|YP_003534838.1|	-	0.097	12.7	1.2	0.42	10.7	0.0	2.6	3	0	0	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
AA_permease_2	PF13520.1	gi|292654942|ref|YP_003534839.1|	-	8.4e-32	110.2	30.5	1.1e-31	109.8	21.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|292654942|ref|YP_003534839.1|	-	8.5e-18	63.9	32.2	8.5e-18	63.9	22.3	1.5	1	1	0	1	1	1	1	Amino	acid	permease
UPF0126	PF03458.8	gi|292654943|ref|YP_003534840.1|	-	2.4e-39	132.8	31.5	2.6e-20	71.8	9.5	2.3	2	0	0	2	2	2	2	UPF0126	domain
SAM_adeno_trans	PF01887.11	gi|292654944|ref|YP_003534841.1|	-	4.1e-76	255.4	0.0	4.6e-76	255.2	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CTP_transf_2	PF01467.21	gi|292654945|ref|YP_003534842.1|	-	5.5e-17	62.2	0.1	1e-16	61.3	0.0	1.4	1	1	0	1	1	1	1	Cytidylyltransferase
Citrate_ly_lig	PF08218.6	gi|292654945|ref|YP_003534842.1|	-	0.046	13.1	0.0	0.4	10.1	0.0	2.2	1	1	0	2	2	2	0	Citrate	lyase	ligase	C-terminal	domain
Lon_C	PF05362.8	gi|292654946|ref|YP_003534843.1|	-	6.7e-35	120.2	3.2	1e-34	119.6	2.2	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.1	gi|292654946|ref|YP_003534843.1|	-	4.8e-30	104.6	0.0	1.4e-21	76.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|292654946|ref|YP_003534843.1|	-	2.3e-17	62.8	0.1	1e-10	41.1	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|292654946|ref|YP_003534843.1|	-	3.1e-14	52.7	0.0	1.2e-07	31.4	0.0	2.7	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|292654946|ref|YP_003534843.1|	-	4.3e-10	39.4	0.0	0.0005	19.8	0.0	2.7	3	0	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|292654946|ref|YP_003534843.1|	-	6.4e-10	38.3	0.9	0.016	14.0	0.0	3.3	3	0	0	3	3	3	3	MCM2/3/5	family
ChlI	PF13541.1	gi|292654946|ref|YP_003534843.1|	-	1.3e-09	37.5	0.4	2.8e-09	36.5	0.3	1.6	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA	PF00004.24	gi|292654946|ref|YP_003534843.1|	-	4.9e-07	30.0	0.0	0.053	13.7	0.0	2.9	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|292654946|ref|YP_003534843.1|	-	6.4e-06	25.3	0.1	0.0029	16.6	0.0	2.6	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Sigma54_activ_2	PF14532.1	gi|292654946|ref|YP_003534843.1|	-	2.4e-05	24.4	0.0	0.094	12.7	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_22	PF13401.1	gi|292654946|ref|YP_003534843.1|	-	0.00011	22.3	0.0	0.0068	16.5	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|292654946|ref|YP_003534843.1|	-	0.00012	20.9	0.6	0.049	12.3	0.0	2.6	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_3	PF07726.6	gi|292654946|ref|YP_003534843.1|	-	0.00022	20.8	0.1	0.26	10.8	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|292654946|ref|YP_003534843.1|	-	0.0014	18.2	0.3	0.023	14.2	0.0	2.5	3	0	0	3	3	2	1	AAA	domain
AAA_18	PF13238.1	gi|292654946|ref|YP_003534843.1|	-	0.0035	17.6	0.0	0.018	15.3	0.0	2.3	2	0	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|292654946|ref|YP_003534843.1|	-	0.0041	16.8	0.0	0.013	15.2	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_PrkA	PF08298.6	gi|292654946|ref|YP_003534843.1|	-	0.0056	15.4	0.0	0.26	9.9	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
PhoH	PF02562.11	gi|292654946|ref|YP_003534843.1|	-	0.0075	15.5	0.0	0.016	14.4	0.0	1.5	1	0	0	1	1	1	1	PhoH-like	protein
AAA_33	PF13671.1	gi|292654946|ref|YP_003534843.1|	-	0.013	15.3	1.1	0.044	13.6	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|292654946|ref|YP_003534843.1|	-	0.015	14.4	0.0	0.039	13.0	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
T2SE	PF00437.15	gi|292654946|ref|YP_003534843.1|	-	0.018	13.9	0.1	0.093	11.6	0.0	2.2	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.7	gi|292654946|ref|YP_003534843.1|	-	0.02	14.5	0.0	0.037	13.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.4	gi|292654946|ref|YP_003534843.1|	-	0.021	13.4	0.0	0.037	12.6	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ABC_tran	PF00005.22	gi|292654946|ref|YP_003534843.1|	-	0.027	14.7	0.0	0.093	13.0	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
DUF815	PF05673.8	gi|292654946|ref|YP_003534843.1|	-	0.028	13.3	0.0	0.053	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_16	PF13191.1	gi|292654946|ref|YP_003534843.1|	-	0.035	14.0	0.0	0.12	12.3	0.0	2.0	2	0	0	2	2	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|292654946|ref|YP_003534843.1|	-	0.044	13.2	0.0	0.11	11.9	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|292654946|ref|YP_003534843.1|	-	0.044	14.6	0.1	0.3	11.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Parvo_NS1	PF01057.12	gi|292654946|ref|YP_003534843.1|	-	0.085	11.7	0.0	0.15	10.9	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Abi	PF02517.11	gi|292654947|ref|YP_003534844.1|	-	4.1e-16	58.8	2.2	1.6e-12	47.3	7.1	2.3	2	1	0	2	2	2	1	CAAX	protease	self-immunity
DUF3464	PF11947.3	gi|292654947|ref|YP_003534844.1|	-	0.029	13.8	2.4	0.03	13.8	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3464)
DUF3953	PF13129.1	gi|292654948|ref|YP_003534845.1|	-	1.1	8.9	6.2	8.2	6.1	0.0	3.1	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3953)
DUF3040	PF11239.3	gi|292654948|ref|YP_003534845.1|	-	1.6	8.8	6.1	0.55	10.3	1.8	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DNA_binding_1	PF01035.15	gi|292654949|ref|YP_003534846.1|	-	6.7e-08	32.1	0.0	1.1e-07	31.5	0.0	1.4	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
IGPS	PF00218.16	gi|292654950|ref|YP_003534847.1|	-	6e-75	251.5	0.0	6.6e-75	251.4	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
QRPTase_C	PF01729.14	gi|292654950|ref|YP_003534847.1|	-	4e-06	26.4	0.3	4.1e-05	23.1	0.0	2.1	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NanE	PF04131.9	gi|292654950|ref|YP_003534847.1|	-	0.00044	19.2	0.4	0.0027	16.6	0.0	2.3	1	1	1	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
His_biosynth	PF00977.16	gi|292654950|ref|YP_003534847.1|	-	0.00056	19.2	0.1	0.072	12.3	0.0	2.8	2	2	1	3	3	3	1	Histidine	biosynthesis	protein
DeoC	PF01791.4	gi|292654950|ref|YP_003534847.1|	-	0.0016	17.7	0.1	0.08	12.2	0.0	2.2	2	0	0	2	2	2	1	DeoC/LacD	family	aldolase
PcrB	PF01884.12	gi|292654950|ref|YP_003534847.1|	-	0.0042	16.3	0.2	0.0086	15.3	0.2	1.7	1	1	0	1	1	1	1	PcrB	family
DHO_dh	PF01180.16	gi|292654950|ref|YP_003534847.1|	-	0.015	14.3	0.0	0.033	13.1	0.0	1.6	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
ThiG	PF05690.9	gi|292654950|ref|YP_003534847.1|	-	0.03	13.3	0.1	0.17	10.9	0.0	2.2	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
DUF556	PF04476.8	gi|292654950|ref|YP_003534847.1|	-	0.034	13.3	1.9	3.7	6.7	0.1	2.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF556)
Amidohydro_3	PF07969.6	gi|292654950|ref|YP_003534847.1|	-	0.042	13.0	0.3	0.088	12.0	0.2	1.4	1	0	0	1	1	1	0	Amidohydrolase	family
NMO	PF03060.10	gi|292654950|ref|YP_003534847.1|	-	0.048	12.8	0.1	2.2	7.3	0.0	2.3	2	0	0	2	2	2	0	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|292654950|ref|YP_003534847.1|	-	0.059	12.1	1.2	0.34	9.6	0.0	2.2	2	1	0	3	3	3	0	FMN-dependent	dehydrogenase
Glyoxalase_2	PF12681.2	gi|292654950|ref|YP_003534847.1|	-	0.14	12.7	1.2	19	5.9	0.1	2.7	1	1	1	2	2	2	0	Glyoxalase-like	domain
PALP	PF00291.20	gi|292654951|ref|YP_003534848.1|	-	1.1e-34	120.1	0.3	1.6e-34	119.5	0.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.15	gi|292654952|ref|YP_003534849.1|	-	7.5e-94	313.0	0.0	8.7e-94	312.8	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|292654952|ref|YP_003534849.1|	-	5.6e-05	22.5	0.3	0.00068	18.9	0.1	2.1	2	0	0	2	2	2	1	PcrB	family
His_biosynth	PF00977.16	gi|292654952|ref|YP_003534849.1|	-	0.0013	18.0	0.1	0.0024	17.1	0.1	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DeoC	PF01791.4	gi|292654953|ref|YP_003534850.1|	-	3.6e-38	131.1	0.0	4.6e-38	130.8	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.19	gi|292654953|ref|YP_003534850.1|	-	0.0063	15.8	0.1	0.012	14.9	0.0	1.5	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
TMP-TENI	PF02581.12	gi|292654953|ref|YP_003534850.1|	-	0.075	12.1	0.8	3.2	6.8	0.2	2.9	3	1	0	3	3	3	0	Thiamine	monophosphate	synthase/TENI
DUF561	PF04481.7	gi|292654953|ref|YP_003534850.1|	-	0.1	11.5	0.0	0.16	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF561)
DNA_binding_1	PF01035.15	gi|292654954|ref|YP_003534851.1|	-	5.2e-24	83.7	0.0	6.7e-24	83.4	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
DUF2514	PF10721.4	gi|292654954|ref|YP_003534851.1|	-	0.02	14.6	0.0	0.026	14.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2514)
DHQS	PF01959.11	gi|292654955|ref|YP_003534852.1|	-	1.9e-149	497.1	2.0	2.2e-149	496.9	1.4	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	(EC	4.6.1.3)
QRPTase_C	PF01729.14	gi|292654955|ref|YP_003534852.1|	-	0.0034	16.9	0.9	0.13	11.8	0.1	2.3	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Hint_2	PF13403.1	gi|292654955|ref|YP_003534852.1|	-	0.017	15.0	0.2	1.7	8.5	0.0	2.9	2	0	0	2	2	2	0	Hint	domain
Hint	PF01079.15	gi|292654955|ref|YP_003534852.1|	-	0.049	12.8	0.0	0.8	8.8	0.0	2.3	2	0	0	2	2	2	0	Hint	module
TM2	PF05154.11	gi|292654956|ref|YP_003534853.1|	-	0.00034	20.7	2.4	0.00065	19.8	1.6	1.4	1	0	0	1	1	1	1	TM2	domain
DZR	PF12773.2	gi|292654956|ref|YP_003534853.1|	-	0.00085	19.0	0.3	0.0013	18.4	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292654956|ref|YP_003534853.1|	-	0.00094	18.3	1.7	0.0014	17.7	1.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|292654956|ref|YP_003534853.1|	-	0.0062	16.2	0.1	0.29	10.8	0.1	2.2	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nudix_N_2	PF14803.1	gi|292654956|ref|YP_003534853.1|	-	0.0073	15.9	0.6	1.1	9.0	0.0	2.5	2	0	0	2	2	2	1	Nudix	N-terminal
zinc_ribbon_2	PF13240.1	gi|292654956|ref|YP_003534853.1|	-	0.018	14.5	1.2	0.029	13.8	0.9	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2301	PF10063.4	gi|292654956|ref|YP_003534853.1|	-	0.024	14.8	0.0	0.035	14.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	integral	membrane	protein	(DUF2301)
Rad50_zn_hook	PF04423.9	gi|292654956|ref|YP_003534853.1|	-	0.035	13.5	1.1	0.07	12.6	0.1	1.8	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Zn-ribbon_8	PF09723.5	gi|292654956|ref|YP_003534853.1|	-	0.54	10.2	2.1	0.79	9.7	0.1	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
TerY-C	PF15616.1	gi|292654956|ref|YP_003534853.1|	-	3.5	7.5	5.5	6	6.8	0.4	2.1	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
YiaAB	PF05360.9	gi|292654956|ref|YP_003534853.1|	-	6.1	6.4	6.9	1.7	8.2	0.7	2.3	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
N6_N4_Mtase	PF01555.13	gi|292654957|ref|YP_003534854.1|	-	3.6e-35	121.5	0.0	5.1e-35	121.0	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|292654957|ref|YP_003534854.1|	-	1.2e-11	44.6	0.4	4.4e-05	23.4	0.1	2.8	3	0	0	3	3	3	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|292654957|ref|YP_003534854.1|	-	0.00032	20.3	0.0	0.12	11.9	0.0	2.9	3	0	0	3	3	3	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.7	gi|292654957|ref|YP_003534854.1|	-	0.0038	17.6	0.1	1.1	9.7	0.0	3.1	2	1	1	3	3	3	1	Methyltransferase	domain
AAA_17	PF13207.1	gi|292654957|ref|YP_003534854.1|	-	0.048	14.4	0.0	0.45	11.3	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
MethyltransfD12	PF02086.10	gi|292654957|ref|YP_003534854.1|	-	0.08	12.3	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
TFIIB	PF00382.14	gi|292654958|ref|YP_003534855.1|	-	1.5e-41	140.0	0.6	1.9e-21	75.6	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292654958|ref|YP_003534855.1|	-	2.7e-15	55.4	3.1	2.8e-15	55.3	1.2	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|292654958|ref|YP_003534855.1|	-	0.00037	19.7	1.0	1.3	8.3	0.0	4.4	4	0	0	4	4	4	1	Sigma-70,	region	4
RRN7	PF11781.3	gi|292654958|ref|YP_003534855.1|	-	0.0025	17.2	1.7	0.0046	16.4	1.2	1.4	1	0	0	1	1	1	1	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
OrfB_Zn_ribbon	PF07282.6	gi|292654958|ref|YP_003534855.1|	-	0.0041	16.7	1.0	0.011	15.3	0.7	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|292654958|ref|YP_003534855.1|	-	0.026	13.7	1.1	0.046	12.9	0.8	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|292654958|ref|YP_003534855.1|	-	0.073	12.7	0.7	0.2	11.4	0.5	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
A2L_zn_ribbon	PF08792.5	gi|292654958|ref|YP_003534855.1|	-	0.084	12.3	3.3	0.74	9.3	2.5	2.0	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|292654958|ref|YP_003534855.1|	-	0.25	11.6	5.3	0.091	13.0	0.8	2.4	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
HTH_AsnC-type	PF13404.1	gi|292654958|ref|YP_003534855.1|	-	0.26	10.8	2.0	1.4	8.4	0.0	3.0	3	1	1	4	4	4	0	AsnC-type	helix-turn-helix	domain
Zn-ribbon_8	PF09723.5	gi|292654958|ref|YP_003534855.1|	-	0.87	9.5	4.7	1.3	9.0	0.4	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Peripla_BP_2	PF01497.13	gi|292654959|ref|YP_003534856.1|	-	3.8e-16	58.9	0.0	6.7e-16	58.1	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
NTPase_I-T	PF01931.13	gi|292654960|ref|YP_003534857.1|	-	2.6e-37	128.1	0.0	3.3e-37	127.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
UPF0104	PF03706.8	gi|292654961|ref|YP_003534858.1|	-	2.4e-38	132.0	27.2	5.8e-38	130.8	18.8	1.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Glycos_transf_2	PF00535.21	gi|292654961|ref|YP_003534858.1|	-	1.4e-26	93.1	0.0	2.1e-26	92.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292654961|ref|YP_003534858.1|	-	1.8e-15	57.3	2.3	4.9e-15	55.9	1.6	1.7	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|292654961|ref|YP_003534858.1|	-	2.5e-07	30.0	0.0	3.6e-07	29.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|292654961|ref|YP_003534858.1|	-	0.00051	20.2	0.2	0.001	19.3	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|292654961|ref|YP_003534858.1|	-	0.015	15.0	1.0	0.057	13.1	0.7	2.0	1	0	0	1	1	1	0	Glycosyl	transferase	family	group	2
HTH_24	PF13412.1	gi|292654962|ref|YP_003534859.1|	-	0.0052	16.1	0.2	0.33	10.3	0.0	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.14	gi|292654962|ref|YP_003534859.1|	-	0.13	11.6	0.0	0.67	9.3	0.0	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_20	PF12840.2	gi|292654963|ref|YP_003534860.1|	-	9.5e-10	38.1	0.1	1.7e-05	24.5	0.1	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292654963|ref|YP_003534860.1|	-	3.5e-07	29.7	0.6	7.3e-06	25.5	0.2	2.5	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292654963|ref|YP_003534860.1|	-	1.8e-06	27.2	0.0	7.4e-05	22.0	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|292654963|ref|YP_003534860.1|	-	3.1e-06	27.1	0.0	0.066	13.2	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|292654963|ref|YP_003534860.1|	-	3.4e-06	26.6	0.0	6.3e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|292654963|ref|YP_003534860.1|	-	2e-05	24.1	0.0	0.0033	17.1	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292654963|ref|YP_003534860.1|	-	5.5e-05	22.7	0.0	0.0099	15.5	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|292654963|ref|YP_003534860.1|	-	0.00012	21.6	0.0	0.00049	19.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.1	gi|292654963|ref|YP_003534860.1|	-	0.00015	21.2	0.0	0.00034	20.1	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_IclR	PF09339.5	gi|292654963|ref|YP_003534860.1|	-	0.00028	20.4	1.6	0.0021	17.5	0.2	2.7	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292654963|ref|YP_003534860.1|	-	0.00036	20.0	0.4	0.00072	19.0	0.1	1.7	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292654963|ref|YP_003534860.1|	-	0.0017	18.1	0.0	0.0068	16.1	0.0	2.0	2	1	1	3	3	3	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|292654963|ref|YP_003534860.1|	-	0.0025	17.2	0.3	0.0076	15.6	0.1	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_17	PF12728.2	gi|292654963|ref|YP_003534860.1|	-	0.005	17.0	0.0	0.12	12.6	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292654963|ref|YP_003534860.1|	-	0.0098	15.8	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|292654963|ref|YP_003534860.1|	-	0.012	15.6	0.0	0.026	14.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|292654963|ref|YP_003534860.1|	-	0.019	15.2	0.1	0.61	10.4	0.0	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|292654963|ref|YP_003534860.1|	-	0.039	14.0	0.0	0.12	12.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
Sigma70_r4	PF04545.11	gi|292654963|ref|YP_003534860.1|	-	0.051	12.8	0.0	0.091	12.0	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
MerR_1	PF13411.1	gi|292654963|ref|YP_003534860.1|	-	0.07	12.9	0.0	0.25	11.1	0.0	1.8	2	0	0	2	2	2	0	MerR	HTH	family	regulatory	protein
RepL	PF05732.6	gi|292654963|ref|YP_003534860.1|	-	0.075	12.2	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_3	PF01381.17	gi|292654963|ref|YP_003534860.1|	-	0.082	12.7	0.1	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
HTH_6	PF01418.12	gi|292654963|ref|YP_003534860.1|	-	0.098	12.3	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
DUF2250	PF10007.4	gi|292654963|ref|YP_003534860.1|	-	0.11	12.3	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_10	PF04967.7	gi|292654963|ref|YP_003534860.1|	-	0.12	12.0	0.0	0.54	9.8	0.0	2.1	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_Tnp_1	PF01527.15	gi|292654963|ref|YP_003534860.1|	-	0.13	12.1	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	Transposase
HTH_31	PF13560.1	gi|292654963|ref|YP_003534860.1|	-	0.14	12.3	1.1	0.23	11.6	0.1	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
LRV	PF01816.12	gi|292654963|ref|YP_003534860.1|	-	0.48	10.7	4.7	0.31	11.3	0.9	2.6	2	0	0	2	2	1	0	Leucine	rich	repeat	variant
Band_7	PF01145.20	gi|292654964|ref|YP_003534861.1|	-	4.3e-38	131.0	4.2	4.3e-38	131.0	2.9	2.5	3	0	0	3	3	3	2	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|292654964|ref|YP_003534861.1|	-	0.0003	20.3	0.1	0.00073	19.1	0.1	1.6	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
NfeD	PF01957.13	gi|292654965|ref|YP_003534862.1|	-	1.9e-12	47.5	2.3	2.7e-12	47.0	1.6	1.1	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
Mrr_cat	PF04471.7	gi|292654966|ref|YP_003534863.1|	-	5.5e-08	32.6	0.0	1.2e-07	31.5	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
DUF4352	PF11611.3	gi|292654966|ref|YP_003534863.1|	-	0.00095	19.3	0.2	0.0078	16.3	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4352)
PK	PF00224.16	gi|292654969|ref|YP_003534866.1|	-	7.8e-112	373.3	5.3	1.2e-111	372.7	3.7	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|292654969|ref|YP_003534866.1|	-	1e-33	115.3	1.6	1e-33	115.3	1.1	1.8	2	0	0	2	2	2	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.18	gi|292654969|ref|YP_003534866.1|	-	9e-12	44.3	1.2	7.2e-11	41.5	0.1	3.0	3	0	0	3	3	3	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|292654969|ref|YP_003534866.1|	-	0.005	15.7	4.6	0.01	14.7	1.0	2.3	1	1	1	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
KdgT	PF03812.8	gi|292654971|ref|YP_003534868.1|	-	0.023	13.8	0.1	0.03	13.4	0.0	1.2	1	0	0	1	1	1	0	2-keto-3-deoxygluconate	permease
TauE	PF01925.14	gi|292654971|ref|YP_003534868.1|	-	0.13	11.7	2.5	0.17	11.2	1.8	1.1	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
Metal_resist	PF13801.1	gi|292654971|ref|YP_003534868.1|	-	0.14	12.1	0.2	0.16	11.9	0.1	1.1	1	0	0	1	1	1	0	Heavy-metal	resistance
tRNA-synt_1g	PF09334.6	gi|292654972|ref|YP_003534869.1|	-	5.3e-133	443.4	0.1	1.7e-78	264.0	0.0	2.5	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.15	gi|292654972|ref|YP_003534869.1|	-	7.5e-22	76.9	0.3	1.2e-21	76.3	0.2	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.17	gi|292654972|ref|YP_003534869.1|	-	9.8e-16	56.8	0.0	4.5e-09	34.8	0.1	3.3	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1e	PF01406.14	gi|292654972|ref|YP_003534869.1|	-	7.8e-09	35.0	0.0	4e-06	26.1	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Anticodon_1	PF08264.8	gi|292654972|ref|YP_003534869.1|	-	1.8e-06	27.8	0.0	3.5e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1d	PF00750.14	gi|292654972|ref|YP_003534869.1|	-	0.00027	19.8	2.1	0.13	11.0	0.1	2.8	2	1	1	3	3	3	2	tRNA	synthetases	class	I	(R)
SIMPL	PF04402.9	gi|292654972|ref|YP_003534869.1|	-	0.011	15.5	0.2	0.028	14.3	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
DUF2423	PF10338.4	gi|292654972|ref|YP_003534869.1|	-	0.029	14.3	0.5	0.076	13.0	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2423)
tRNA-synt_1f	PF01921.13	gi|292654972|ref|YP_003534869.1|	-	0.11	11.1	0.2	3.7	6.1	0.0	2.8	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(K)
SNARE_assoc	PF09335.6	gi|292654973|ref|YP_003534870.1|	-	1.6e-10	41.2	2.5	3.7e-10	40.0	1.7	1.7	1	1	0	1	1	1	1	SNARE	associated	Golgi	protein
Pyridoxal_deC	PF00282.14	gi|292654974|ref|YP_003534871.1|	-	2.7e-31	108.3	0.0	3.6e-31	107.9	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.14	gi|292654974|ref|YP_003534871.1|	-	5.3e-13	48.4	0.1	9.6e-13	47.5	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|292654974|ref|YP_003534871.1|	-	9.7e-09	34.6	0.0	5.7e-08	32.0	0.0	1.9	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
SHMT	PF00464.14	gi|292654974|ref|YP_003534871.1|	-	0.022	13.1	0.0	0.033	12.5	0.0	1.2	1	0	0	1	1	1	0	Serine	hydroxymethyltransferase
PPDK_N	PF01326.14	gi|292654975|ref|YP_003534872.1|	-	8.5e-110	366.8	1.1	1.7e-109	365.8	0.8	1.4	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.13	gi|292654975|ref|YP_003534872.1|	-	5.3e-80	268.4	0.0	7.6e-80	267.9	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.18	gi|292654975|ref|YP_003534872.1|	-	1.1e-28	98.6	2.5	2.5e-28	97.4	1.7	1.7	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|292654975|ref|YP_003534872.1|	-	0.0074	15.1	0.1	0.022	13.6	0.0	1.7	2	0	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
Epimerase_2	PF02350.14	gi|292654975|ref|YP_003534872.1|	-	0.016	13.9	0.2	0.084	11.6	0.0	2.2	3	0	0	3	3	3	0	UDP-N-acetylglucosamine	2-epimerase
PEP-utilisers_N	PF05524.8	gi|292654975|ref|YP_003534872.1|	-	0.017	14.8	0.3	0.66	9.7	0.0	2.9	2	0	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
Prok-RING_4	PF14447.1	gi|292654976|ref|YP_003534873.1|	-	0.077	12.5	0.2	0.15	11.5	0.1	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
LIM	PF00412.17	gi|292654976|ref|YP_003534873.1|	-	0.081	13.0	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	LIM	domain
53-BP1_Tudor	PF09038.5	gi|292654976|ref|YP_003534873.1|	-	0.14	11.9	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Tumour	suppressor	p53-binding	protein-1	Tudor
DnaJ	PF00226.26	gi|292654977|ref|YP_003534874.1|	-	1.9e-08	33.9	0.1	3.1e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.1	gi|292654977|ref|YP_003534874.1|	-	0.079	12.3	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
MarR_2	PF12802.2	gi|292654978|ref|YP_003534875.1|	-	9.5e-12	44.4	0.2	3.3e-11	42.6	0.1	2.0	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292654978|ref|YP_003534875.1|	-	9.5e-11	40.9	0.0	1.7e-10	40.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|292654978|ref|YP_003534875.1|	-	1.6e-08	34.1	0.0	5.8e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|292654978|ref|YP_003534875.1|	-	1.8e-08	34.5	0.2	3.1e-07	30.6	0.0	2.7	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|292654978|ref|YP_003534875.1|	-	3.5e-06	26.7	0.1	1.2e-05	25.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292654978|ref|YP_003534875.1|	-	8.4e-06	25.5	0.0	2.4e-05	24.0	0.0	1.8	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.1	gi|292654978|ref|YP_003534875.1|	-	3.3e-05	23.6	0.0	7.2e-05	22.5	0.0	1.6	2	0	0	2	2	1	1	Winged	helix-turn-helix
HTH_11	PF08279.7	gi|292654978|ref|YP_003534875.1|	-	3.3e-05	23.4	0.0	5.7e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
DUF387	PF04079.11	gi|292654978|ref|YP_003534875.1|	-	0.00011	21.5	0.1	0.00017	20.9	0.0	1.3	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
HTH_IclR	PF09339.5	gi|292654978|ref|YP_003534875.1|	-	0.00011	21.6	0.0	0.00027	20.4	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292654978|ref|YP_003534875.1|	-	0.00015	21.3	0.0	0.00031	20.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_13	PF11972.3	gi|292654978|ref|YP_003534875.1|	-	0.00033	20.4	0.0	0.00071	19.3	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TrmB	PF01978.14	gi|292654978|ref|YP_003534875.1|	-	0.00078	19.1	0.1	0.0017	18.0	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|292654978|ref|YP_003534875.1|	-	0.0013	18.8	0.0	0.0042	17.1	0.0	1.9	2	0	0	2	2	1	1	Transcriptional	regulator
GntR	PF00392.16	gi|292654978|ref|YP_003534875.1|	-	0.0025	17.1	0.1	0.0064	15.9	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_23	PF13384.1	gi|292654978|ref|YP_003534875.1|	-	0.0026	17.3	0.0	0.0062	16.1	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|292654978|ref|YP_003534875.1|	-	0.0037	17.1	0.0	0.0077	16.1	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.1	gi|292654978|ref|YP_003534875.1|	-	0.0046	16.5	0.0	0.0066	16.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_28	PF13518.1	gi|292654978|ref|YP_003534875.1|	-	0.0083	16.1	0.0	0.018	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_12	PF08461.5	gi|292654978|ref|YP_003534875.1|	-	0.0083	15.8	0.2	0.029	14.1	0.1	2.0	2	1	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
MotA_activ	PF09114.5	gi|292654978|ref|YP_003534875.1|	-	0.01	15.5	0.0	0.025	14.3	0.0	1.7	1	1	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
HemN_C	PF06969.11	gi|292654978|ref|YP_003534875.1|	-	0.015	15.3	0.0	0.038	14.0	0.0	1.7	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_36	PF13730.1	gi|292654978|ref|YP_003534875.1|	-	0.016	15.3	0.0	0.052	13.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292654978|ref|YP_003534875.1|	-	0.026	14.0	0.1	0.069	12.7	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292654978|ref|YP_003534875.1|	-	0.029	14.5	0.1	0.051	13.7	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Rio2_N	PF09202.6	gi|292654978|ref|YP_003534875.1|	-	0.035	14.1	0.0	0.061	13.3	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
NMD3	PF04981.8	gi|292654978|ref|YP_003534875.1|	-	0.038	13.1	0.0	0.056	12.5	0.0	1.2	1	0	0	1	1	1	0	NMD3	family
LexA_DNA_bind	PF01726.11	gi|292654978|ref|YP_003534875.1|	-	0.038	13.5	0.0	0.15	11.6	0.0	1.9	2	0	0	2	2	2	0	LexA	DNA	binding	domain
Mnd1	PF03962.10	gi|292654978|ref|YP_003534875.1|	-	0.04	13.5	0.1	0.079	12.6	0.0	1.4	1	1	0	1	1	1	0	Mnd1	family
HU-DNA_bdg	PF14848.1	gi|292654978|ref|YP_003534875.1|	-	0.043	13.5	0.1	0.11	12.1	0.0	1.7	2	0	0	2	2	2	0	DNA-binding	domain
HTH_3	PF01381.17	gi|292654978|ref|YP_003534875.1|	-	0.052	13.3	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
DUF4364	PF14277.1	gi|292654978|ref|YP_003534875.1|	-	0.067	12.8	0.0	0.099	12.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF2250	PF10007.4	gi|292654978|ref|YP_003534875.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FaeA	PF04703.7	gi|292654978|ref|YP_003534875.1|	-	0.2	11.8	3.0	0.43	10.7	0.0	2.6	3	0	0	3	3	2	0	FaeA-like	protein
Metallophos	PF00149.23	gi|292654979|ref|YP_003534876.1|	-	1.5e-05	24.5	0.3	3.5e-05	23.3	0.0	1.6	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
Amino_oxidase	PF01593.19	gi|292654980|ref|YP_003534877.1|	-	1e-46	159.9	4.8	8e-46	157.0	3.4	1.9	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|292654980|ref|YP_003534877.1|	-	1.2e-17	63.7	0.2	3.2e-17	62.2	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|292654980|ref|YP_003534877.1|	-	2e-16	59.9	3.1	2.3e-07	30.0	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292654980|ref|YP_003534877.1|	-	2.2e-11	44.1	0.0	1.2e-06	28.7	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292654980|ref|YP_003534877.1|	-	1.3e-09	38.3	0.5	6.7e-06	26.4	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292654980|ref|YP_003534877.1|	-	5.1e-09	35.1	0.0	9e-05	21.1	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|292654980|ref|YP_003534877.1|	-	3.8e-08	32.7	0.2	4.6e-06	25.9	0.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292654980|ref|YP_003534877.1|	-	1.5e-07	31.5	0.2	3.4e-05	23.8	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292654980|ref|YP_003534877.1|	-	1.9e-06	27.0	2.3	4.3e-06	25.8	0.6	1.9	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|292654980|ref|YP_003534877.1|	-	2.8e-06	27.2	3.4	0.031	14.0	0.1	2.9	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Thi4	PF01946.12	gi|292654980|ref|YP_003534877.1|	-	3.6e-05	22.9	0.1	6.2e-05	22.2	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|292654980|ref|YP_003534877.1|	-	0.00014	21.1	3.8	0.00044	19.4	0.8	2.6	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_10	PF13460.1	gi|292654980|ref|YP_003534877.1|	-	0.00024	21.1	2.3	0.00085	19.3	0.3	2.4	2	0	0	2	2	2	1	NADH(P)-binding
GIDA	PF01134.17	gi|292654980|ref|YP_003534877.1|	-	0.00048	19.0	1.6	0.0027	16.6	0.2	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.13	gi|292654980|ref|YP_003534877.1|	-	0.00055	19.6	0.2	0.0011	18.7	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FMO-like	PF00743.14	gi|292654980|ref|YP_003534877.1|	-	0.00059	18.1	0.0	0.00081	17.7	0.0	1.1	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
Lycopene_cycl	PF05834.7	gi|292654980|ref|YP_003534877.1|	-	0.00065	18.7	1.4	0.071	12.0	0.1	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|292654980|ref|YP_003534877.1|	-	0.0015	18.7	0.0	0.0071	16.5	0.0	2.1	2	0	0	2	2	2	1	Putative	NAD(P)-binding
IlvN	PF07991.7	gi|292654980|ref|YP_003534877.1|	-	0.002	17.5	0.4	0.013	14.9	0.0	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
AlaDh_PNT_C	PF01262.16	gi|292654980|ref|YP_003534877.1|	-	0.0035	16.9	0.1	0.0075	15.8	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.11	gi|292654980|ref|YP_003534877.1|	-	0.0059	16.0	0.1	0.012	15.0	0.1	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.13	gi|292654980|ref|YP_003534877.1|	-	0.011	15.7	0.1	0.15	12.0	0.0	2.3	2	0	0	2	2	2	0	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292654980|ref|YP_003534877.1|	-	0.015	14.6	0.4	0.028	13.8	0.1	1.6	2	0	0	2	2	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|292654980|ref|YP_003534877.1|	-	0.096	12.4	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Shikimate_DH	PF01488.15	gi|292654980|ref|YP_003534877.1|	-	0.099	12.7	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
YjeF_N	PF03853.10	gi|292654980|ref|YP_003534877.1|	-	0.1	12.2	0.1	0.19	11.3	0.1	1.4	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
NAD_binding_2	PF03446.10	gi|292654980|ref|YP_003534877.1|	-	0.13	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Trp_halogenase	PF04820.9	gi|292654980|ref|YP_003534877.1|	-	0.16	10.5	1.3	0.22	10.1	0.2	1.6	2	0	0	2	2	2	0	Tryptophan	halogenase
PALP	PF00291.20	gi|292654981|ref|YP_003534878.1|	-	2.6e-55	187.8	1.2	3e-55	187.5	0.8	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Fe_dep_repr_C	PF02742.10	gi|292654982|ref|YP_003534879.1|	-	2.5e-28	97.5	1.5	4.5e-28	96.7	1.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|292654982|ref|YP_003534879.1|	-	3.5e-21	74.8	0.6	8e-21	73.7	0.2	1.8	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.9	gi|292654982|ref|YP_003534879.1|	-	3e-16	59.1	0.6	5.5e-16	58.3	0.1	1.7	2	0	0	2	2	2	1	FeoA	domain
MarR_2	PF12802.2	gi|292654982|ref|YP_003534879.1|	-	6.3e-09	35.3	0.0	2.1e-08	33.6	0.0	1.9	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|292654982|ref|YP_003534879.1|	-	6.3e-08	32.1	0.0	1.8e-07	30.7	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|292654982|ref|YP_003534879.1|	-	1.5e-06	28.4	0.0	1.9e-05	24.8	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|292654982|ref|YP_003534879.1|	-	2.3e-05	23.9	0.1	0.00011	21.7	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Crp	PF00325.15	gi|292654982|ref|YP_003534879.1|	-	2.6e-05	23.6	0.0	6.6e-05	22.3	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
HTH_24	PF13412.1	gi|292654982|ref|YP_003534879.1|	-	3.1e-05	23.2	0.0	5.9e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|292654982|ref|YP_003534879.1|	-	8.5e-05	22.2	0.0	0.00019	21.1	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|292654982|ref|YP_003534879.1|	-	0.00044	19.8	0.0	0.00082	19.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HrcA_DNA-bdg	PF03444.10	gi|292654982|ref|YP_003534879.1|	-	0.0012	18.2	0.0	0.002	17.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|292654982|ref|YP_003534879.1|	-	0.0016	18.4	0.0	0.0037	17.3	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_20	PF12840.2	gi|292654982|ref|YP_003534879.1|	-	0.004	16.9	0.0	0.016	15.0	0.0	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
FeoC	PF09012.5	gi|292654982|ref|YP_003534879.1|	-	0.0043	16.7	0.0	0.0084	15.7	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
DUF2250	PF10007.4	gi|292654982|ref|YP_003534879.1|	-	0.0061	16.4	0.1	0.014	15.2	0.0	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Penicillinase_R	PF03965.11	gi|292654982|ref|YP_003534879.1|	-	0.0075	16.3	0.0	0.014	15.4	0.0	1.6	1	1	0	1	1	1	1	Penicillinase	repressor
HTH_5	PF01022.15	gi|292654982|ref|YP_003534879.1|	-	0.0076	15.8	0.0	0.022	14.3	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_1	PF00126.22	gi|292654982|ref|YP_003534879.1|	-	0.0089	15.7	0.0	0.028	14.1	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_12	PF08461.5	gi|292654982|ref|YP_003534879.1|	-	0.0091	15.7	0.1	0.048	13.3	0.1	2.2	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
Topoisom_bac	PF01131.15	gi|292654982|ref|YP_003534879.1|	-	0.0095	14.7	0.0	0.012	14.4	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
HTH_13	PF11972.3	gi|292654982|ref|YP_003534879.1|	-	0.0098	15.7	0.0	0.021	14.6	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_15	PF12324.3	gi|292654982|ref|YP_003534879.1|	-	0.016	14.8	0.0	0.037	13.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_23	PF13384.1	gi|292654982|ref|YP_003534879.1|	-	0.072	12.7	0.0	0.32	10.7	0.0	2.1	2	1	1	3	3	2	0	Homeodomain-like	domain
HTH_11	PF08279.7	gi|292654982|ref|YP_003534879.1|	-	0.086	12.4	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4_2	PF08281.7	gi|292654982|ref|YP_003534879.1|	-	0.14	11.6	0.0	0.28	10.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
UPF0016	PF01169.14	gi|292654983|ref|YP_003534880.1|	-	2.6e-22	78.7	23.2	1.3e-14	54.0	2.6	2.7	3	0	0	3	3	3	2	Uncharacterized	protein	family	UPF0016
LysE	PF01810.13	gi|292654984|ref|YP_003534881.1|	-	2.8e-26	91.9	14.0	6.3e-25	87.5	9.7	2.0	1	1	0	1	1	1	1	LysE	type	translocator
CRA	PF06589.6	gi|292654984|ref|YP_003534881.1|	-	0.061	12.6	0.7	0.19	11.0	0.1	1.9	2	0	0	2	2	2	0	Circumsporozoite-related	antigen	(CRA)
Fe-ADH_2	PF13685.1	gi|292654985|ref|YP_003534882.1|	-	1.7e-58	197.8	0.3	2.3e-58	197.4	0.2	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|292654985|ref|YP_003534882.1|	-	2.7e-22	78.9	2.4	5.8e-22	77.8	1.6	1.4	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|292654985|ref|YP_003534882.1|	-	2.3e-10	39.8	0.0	7.1e-10	38.2	0.0	1.7	1	1	0	1	1	1	1	3-dehydroquinate	synthase
DUF420	PF04238.7	gi|292654986|ref|YP_003534883.1|	-	1.8e-39	134.7	6.7	1.8e-39	134.7	4.7	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF2427	PF10348.4	gi|292654986|ref|YP_003534883.1|	-	0.0049	16.4	1.0	0.0049	16.4	0.7	2.5	3	1	0	3	3	3	1	Domain	of	unknown	function	(DUF2427)
DUF2306	PF10067.4	gi|292654986|ref|YP_003534883.1|	-	0.0079	16.2	1.4	0.0079	16.2	0.9	2.9	1	1	2	3	3	3	1	Predicted	membrane	protein	(DUF2306)
PIG-U	PF06728.8	gi|292654986|ref|YP_003534883.1|	-	0.027	13.3	0.6	0.037	12.9	0.3	1.4	1	1	0	1	1	1	0	GPI	transamidase	subunit	PIG-U
Orai-1	PF07856.7	gi|292654986|ref|YP_003534883.1|	-	0.039	13.5	0.2	0.039	13.5	0.1	2.4	3	0	0	3	3	3	0	Mediator	of	CRAC	channel	activity
SDF	PF00375.13	gi|292654986|ref|YP_003534883.1|	-	0.073	11.8	6.7	0.17	10.6	2.4	2.3	2	1	0	2	2	2	0	Sodium:dicarboxylate	symporter	family
MASE1	PF05231.9	gi|292654986|ref|YP_003534883.1|	-	0.093	11.7	14.9	0.13	11.2	10.3	1.3	1	1	0	1	1	1	0	MASE1
Peptidase_M50	PF02163.17	gi|292654986|ref|YP_003534883.1|	-	2.9	6.8	9.3	2.3	7.1	0.1	2.4	3	0	0	3	3	3	0	Peptidase	family	M50
Cytochrom_B561	PF03188.11	gi|292654986|ref|YP_003534883.1|	-	5.4	6.8	8.8	0.15	11.9	0.6	2.2	2	1	1	3	3	3	0	Eukaryotic	cytochrome	b561
Glycos_transf_1	PF00534.15	gi|292654987|ref|YP_003534884.1|	-	3.2e-16	59.2	0.0	4.9e-16	58.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292654987|ref|YP_003534884.1|	-	1.5e-15	57.6	12.2	1.5e-15	57.6	8.4	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|292654987|ref|YP_003534884.1|	-	1.2e-09	38.1	0.6	2.1e-09	37.3	0.4	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|292654987|ref|YP_003534884.1|	-	0.012	15.4	0.0	0.031	14.0	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	transferase	4-like
Copper-bind	PF00127.15	gi|292654988|ref|YP_003534885.1|	-	1.3e-13	50.9	0.0	3e-13	49.8	0.0	1.6	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Peptidase_M42	PF05343.9	gi|292654989|ref|YP_003534886.1|	-	1.4e-89	299.7	1.2	1.6e-89	299.5	0.8	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|292654989|ref|YP_003534886.1|	-	2.4e-12	46.7	0.2	3.7e-12	46.1	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.12	gi|292654989|ref|YP_003534886.1|	-	0.00063	19.5	0.7	0.0014	18.4	0.0	2.0	2	2	0	2	2	2	1	Peptidase	family	M28
MTH865	PF07747.6	gi|292654990|ref|YP_003534887.1|	-	1.5e-24	85.3	0.2	1.7e-24	85.2	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
PIP49_C	PF12260.3	gi|292654991|ref|YP_003534888.1|	-	0.071	12.5	0.0	0.1	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein-kinase	domain	of	FAM69
Peptidase_S9	PF00326.16	gi|292654992|ref|YP_003534889.1|	-	1e-46	158.8	0.0	1.5e-46	158.3	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.13	gi|292654992|ref|YP_003534889.1|	-	3.8e-14	52.7	0.0	3.4e-10	39.7	0.1	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_5	PF12695.2	gi|292654992|ref|YP_003534889.1|	-	8.7e-13	48.2	0.0	1.8e-12	47.2	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|292654992|ref|YP_003534889.1|	-	2e-11	43.6	0.0	2.9e-10	39.8	0.0	2.1	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_6	PF12697.2	gi|292654992|ref|YP_003534889.1|	-	9.1e-10	38.8	1.7	5.1e-09	36.3	1.2	2.2	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.7	gi|292654992|ref|YP_003534889.1|	-	1.6e-08	33.4	0.0	1.8e-06	26.7	0.0	2.3	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
PD40	PF07676.7	gi|292654992|ref|YP_003534889.1|	-	2e-08	33.7	6.7	0.0015	18.1	0.1	5.3	6	0	0	6	6	5	1	WD40-like	Beta	Propeller	Repeat
BAAT_C	PF08840.6	gi|292654992|ref|YP_003534889.1|	-	1.5e-05	24.8	0.0	0.001	18.8	0.0	2.2	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_1	PF00561.15	gi|292654992|ref|YP_003534889.1|	-	3.9e-05	23.3	0.1	0.004	16.7	0.1	2.3	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
Gmad1	PF10647.4	gi|292654992|ref|YP_003534889.1|	-	0.0011	18.3	1.1	0.014	14.7	0.5	2.7	1	1	0	1	1	1	1	Lipoprotein	LpqB	beta-propeller	domain
DPPIV_N	PF00930.16	gi|292654992|ref|YP_003534889.1|	-	0.0011	17.5	0.0	3	6.3	0.0	4.2	2	1	1	3	3	3	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Esterase	PF00756.15	gi|292654992|ref|YP_003534889.1|	-	0.0013	18.1	0.0	0.074	12.4	0.0	2.3	2	0	0	2	2	2	1	Putative	esterase
Abhydrolase_3	PF07859.8	gi|292654992|ref|YP_003534889.1|	-	0.0014	18.2	0.2	0.0041	16.7	0.1	1.8	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.5	gi|292654992|ref|YP_003534889.1|	-	0.0039	17.0	0.0	0.0079	16.0	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Hydrolase_4	PF12146.3	gi|292654992|ref|YP_003534889.1|	-	0.0055	16.5	0.1	0.082	12.7	0.0	2.4	2	0	0	2	2	2	1	Putative	lysophospholipase
Peptidase_S28	PF05577.7	gi|292654992|ref|YP_003534889.1|	-	0.0082	14.7	0.0	0.012	14.1	0.0	1.1	1	0	0	1	1	1	1	Serine	carboxypeptidase	S28
Abhydrolase_2	PF02230.11	gi|292654992|ref|YP_003534889.1|	-	0.018	14.5	0.0	5.8	6.2	0.0	2.2	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Esterase_phd	PF10503.4	gi|292654992|ref|YP_003534889.1|	-	0.048	12.9	0.9	0.32	10.2	0.0	2.5	2	1	0	2	2	2	0	Esterase	PHB	depolymerase
B12-binding	PF02310.14	gi|292654993|ref|YP_003534890.1|	-	1.7e-20	73.0	0.3	2e-20	72.8	0.2	1.1	1	0	0	1	1	1	1	B12	binding	domain
BcrAD_BadFG	PF01869.15	gi|292654993|ref|YP_003534890.1|	-	0.03	13.6	0.0	0.063	12.5	0.0	1.5	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
Amidohydro_4	PF13147.1	gi|292654993|ref|YP_003534890.1|	-	0.044	13.8	0.2	0.047	13.7	0.2	1.1	1	0	0	1	1	1	0	Amidohydrolase
ArgK	PF03308.11	gi|292654994|ref|YP_003534891.1|	-	3.3e-98	327.7	3.4	4.1e-98	327.3	2.3	1.1	1	0	0	1	1	1	1	ArgK	protein
cobW	PF02492.14	gi|292654994|ref|YP_003534891.1|	-	1.8e-10	40.5	2.0	1.4e-09	37.6	1.4	2.1	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.17	gi|292654994|ref|YP_003534891.1|	-	7.3e-07	28.8	0.4	2.2e-06	27.2	0.3	1.8	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.18	gi|292654994|ref|YP_003534891.1|	-	2.6e-06	26.9	0.4	5.2e-06	26.0	0.3	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|292654994|ref|YP_003534891.1|	-	4.8e-06	27.3	0.9	1.4e-05	25.9	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292654994|ref|YP_003534891.1|	-	1.7e-05	24.8	0.4	0.00014	21.8	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|292654994|ref|YP_003534891.1|	-	3.5e-05	23.4	1.8	0.00012	21.8	0.2	2.7	3	0	0	3	3	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|292654994|ref|YP_003534891.1|	-	4.3e-05	23.1	1.0	8.8e-05	22.1	0.1	1.9	2	0	0	2	2	2	1	AAA	domain
ATP_bind_1	PF03029.12	gi|292654994|ref|YP_003534891.1|	-	4.8e-05	23.0	0.1	0.0002	20.9	0.0	2.0	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
ABC_tran	PF00005.22	gi|292654994|ref|YP_003534891.1|	-	9.7e-05	22.6	0.0	0.00018	21.7	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
GTP_EFTU	PF00009.22	gi|292654994|ref|YP_003534891.1|	-	0.00014	21.3	0.1	0.43	9.9	0.0	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_10	PF12846.2	gi|292654994|ref|YP_003534891.1|	-	0.00014	21.4	1.5	0.00036	20.0	1.0	1.9	1	1	0	1	1	1	1	AAA-like	domain
NTPase_1	PF03266.10	gi|292654994|ref|YP_003534891.1|	-	0.00031	20.5	0.0	0.00069	19.3	0.0	1.6	1	0	0	1	1	1	1	NTPase
KAP_NTPase	PF07693.9	gi|292654994|ref|YP_003534891.1|	-	0.00058	18.9	0.0	0.00077	18.5	0.0	1.4	1	0	0	1	1	1	1	KAP	family	P-loop	domain
AAA_22	PF13401.1	gi|292654994|ref|YP_003534891.1|	-	0.0025	17.9	0.1	0.0074	16.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|292654994|ref|YP_003534891.1|	-	0.0027	17.4	0.2	0.0076	15.9	0.1	1.8	1	1	1	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KTI12	PF08433.5	gi|292654994|ref|YP_003534891.1|	-	0.003	16.8	0.3	0.011	14.9	0.0	1.9	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_29	PF13555.1	gi|292654994|ref|YP_003534891.1|	-	0.0035	16.8	0.3	0.0068	15.9	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.1	gi|292654994|ref|YP_003534891.1|	-	0.0039	17.1	0.0	0.011	15.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292654994|ref|YP_003534891.1|	-	0.0044	17.3	0.7	0.0095	16.2	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
DUF258	PF03193.11	gi|292654994|ref|YP_003534891.1|	-	0.0075	15.4	0.0	0.023	13.8	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
NB-ARC	PF00931.17	gi|292654994|ref|YP_003534891.1|	-	0.014	14.2	0.0	0.025	13.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MMR_HSR1	PF01926.18	gi|292654994|ref|YP_003534891.1|	-	0.016	15.1	0.1	0.043	13.7	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.1	gi|292654994|ref|YP_003534891.1|	-	0.029	13.7	0.0	0.072	12.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|292654994|ref|YP_003534891.1|	-	0.03	13.4	0.2	0.066	12.3	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
TrwB_AAD_bind	PF10412.4	gi|292654994|ref|YP_003534891.1|	-	0.037	12.6	0.0	0.063	11.8	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_33	PF13671.1	gi|292654994|ref|YP_003534891.1|	-	0.047	13.5	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.12	gi|292654994|ref|YP_003534891.1|	-	0.051	12.9	0.0	0.1	11.9	0.0	1.5	1	0	0	1	1	1	0	Thymidylate	kinase
AAA_14	PF13173.1	gi|292654994|ref|YP_003534891.1|	-	0.058	13.2	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|292654994|ref|YP_003534891.1|	-	0.063	13.7	0.2	0.18	12.3	0.1	1.8	2	0	0	2	2	1	0	Miro-like	protein
FeoB_N	PF02421.13	gi|292654994|ref|YP_003534891.1|	-	0.084	12.1	0.1	2.6	7.3	0.0	2.6	3	1	1	4	4	3	0	Ferrous	iron	transport	protein	B
KaiC	PF06745.8	gi|292654994|ref|YP_003534891.1|	-	0.086	11.9	0.1	0.16	11.0	0.0	1.5	1	0	0	1	1	1	0	KaiC
APS_kinase	PF01583.15	gi|292654994|ref|YP_003534891.1|	-	0.11	12.1	0.1	0.28	10.8	0.0	1.7	2	0	0	2	2	2	0	Adenylylsulphate	kinase
NACHT	PF05729.7	gi|292654994|ref|YP_003534891.1|	-	0.16	11.6	0.0	0.32	10.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
DUF2075	PF09848.4	gi|292654994|ref|YP_003534891.1|	-	0.18	10.7	0.1	0.31	9.9	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Abhydrolase_6	PF12697.2	gi|292654995|ref|YP_003534892.1|	-	5.2e-30	105.0	5.3	6.9e-30	104.6	3.7	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|292654995|ref|YP_003534892.1|	-	1.1e-11	44.7	0.2	2.2e-10	40.4	0.1	2.1	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.3	gi|292654995|ref|YP_003534892.1|	-	2.2e-05	24.2	0.0	4.2e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Putative	lysophospholipase
Abhydrolase_1	PF00561.15	gi|292654995|ref|YP_003534892.1|	-	0.00063	19.3	0.1	0.01	15.3	0.1	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
YrhK	PF14145.1	gi|292654996|ref|YP_003534893.1|	-	0.5	10.0	4.8	1.1	8.9	3.3	1.5	1	1	0	1	1	1	0	YrhK-like	protein
DUF35	PF01796.12	gi|292654997|ref|YP_003534894.1|	-	2.6e-09	37.1	2.9	3.4e-09	36.7	2.0	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|292654997|ref|YP_003534894.1|	-	1.7e-05	24.5	1.9	3.2e-05	23.6	1.3	1.5	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-ribbon_3	PF13248.1	gi|292654997|ref|YP_003534894.1|	-	0.08	12.1	0.1	0.19	11.0	0.1	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292654997|ref|YP_003534894.1|	-	0.34	11.2	1.7	0.5	10.7	0.5	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-IS66	PF13005.2	gi|292654997|ref|YP_003534894.1|	-	0.39	10.7	2.1	0.85	9.6	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Thiolase_N	PF00108.18	gi|292654998|ref|YP_003534895.1|	-	7e-12	44.8	0.6	4.8e-10	38.8	0.0	2.3	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|292654998|ref|YP_003534895.1|	-	4.1e-09	35.9	0.3	8.3e-09	34.9	0.2	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|292654998|ref|YP_003534895.1|	-	1.1e-06	28.2	5.3	2.2e-06	27.3	2.2	2.5	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|292654998|ref|YP_003534895.1|	-	0.0011	18.7	1.0	0.044	13.6	0.1	2.7	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|292654998|ref|YP_003534895.1|	-	0.03	13.9	2.0	0.75	9.4	0.4	2.5	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Peptidase_M28	PF04389.12	gi|292654999|ref|YP_003534896.1|	-	3.4e-30	105.1	0.7	4.8e-30	104.6	0.5	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.17	gi|292654999|ref|YP_003534896.1|	-	2.5e-12	46.3	0.0	4.8e-12	45.4	0.0	1.5	1	0	0	1	1	1	1	PA	domain
Peptidase_M20	PF01546.23	gi|292654999|ref|YP_003534896.1|	-	2.8e-06	26.9	0.9	5.5e-06	26.0	0.6	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M42	PF05343.9	gi|292654999|ref|YP_003534896.1|	-	8.8e-05	21.4	0.2	0.00015	20.6	0.2	1.3	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Nicastrin	PF05450.10	gi|292654999|ref|YP_003534896.1|	-	0.077	12.2	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	Nicastrin
NAD_kinase	PF01513.16	gi|292655000|ref|YP_003534897.1|	-	2e-09	36.6	0.4	3.7e-09	35.7	0.3	1.7	1	1	0	1	1	1	1	ATP-NAD	kinase
EII-GUT	PF03608.8	gi|292655001|ref|YP_003534898.1|	-	0.051	13.4	0.0	0.089	12.6	0.0	1.4	1	1	0	1	1	1	0	PTS	system	enzyme	II	sorbitol-specific	factor
DUF202	PF02656.10	gi|292655001|ref|YP_003534898.1|	-	0.42	10.8	3.4	1.3	9.2	0.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
EBP	PF05241.7	gi|292655002|ref|YP_003534899.1|	-	0.056	12.4	0.1	0.16	10.9	0.0	1.7	2	0	0	2	2	2	0	Emopamil	binding	protein
HlyIII	PF03006.15	gi|292655003|ref|YP_003534900.1|	-	0.069	12.5	6.4	0.086	12.2	4.4	1.0	1	0	0	1	1	1	0	Haemolysin-III	related
Vma12	PF11712.3	gi|292655003|ref|YP_003534900.1|	-	8.8	6.0	5.9	5.3	6.7	3.1	1.3	1	1	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
Cytochrom_B_C	PF00032.12	gi|292655004|ref|YP_003534901.1|	-	1.5e-08	34.7	1.6	1.7e-08	34.6	0.2	1.8	2	1	0	2	2	2	1	Cytochrome	b(C-terminal)/b6/petD
YwiC	PF14256.1	gi|292655004|ref|YP_003534901.1|	-	0.037	14.0	2.2	0.065	13.3	1.5	1.6	1	1	0	1	1	1	0	YwiC-like	protein
Pox_A14	PF05767.7	gi|292655004|ref|YP_003534901.1|	-	0.073	13.0	0.2	1.8	8.5	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	virion	envelope	protein	A14
MARVEL	PF01284.18	gi|292655004|ref|YP_003534901.1|	-	0.17	11.7	5.2	0.35	10.6	3.6	1.7	1	1	0	1	1	1	0	Membrane-associating	domain
EamA	PF00892.15	gi|292655004|ref|YP_003534901.1|	-	0.4	10.7	7.2	0.18	11.8	2.2	2.0	2	0	0	2	2	2	0	EamA-like	transporter	family
Cytochrom_B_N_2	PF13631.1	gi|292655005|ref|YP_003534902.1|	-	5.1e-41	140.2	13.5	1.9e-40	138.4	8.0	2.0	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_N	PF00033.14	gi|292655005|ref|YP_003534902.1|	-	1.7e-12	47.0	15.3	2.5e-12	46.5	10.6	1.2	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
PepSY_TM	PF03929.11	gi|292655005|ref|YP_003534902.1|	-	0.052	13.9	0.1	0.052	13.9	0.0	3.9	4	1	0	4	4	4	0	PepSY-associated	TM	helix
UPF0104	PF03706.8	gi|292655006|ref|YP_003534903.1|	-	0.0016	17.7	0.3	0.002	17.4	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
DUF1673	PF07895.6	gi|292655006|ref|YP_003534903.1|	-	0.0096	15.4	0.0	0.011	15.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1673)
Copper-bind	PF00127.15	gi|292655007|ref|YP_003534904.1|	-	1e-13	51.3	0.0	2.6e-13	50.0	0.0	1.6	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|292655007|ref|YP_003534904.1|	-	0.0035	17.2	8.1	0.0035	17.2	5.6	2.8	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HhH-GPD	PF00730.20	gi|292655011|ref|YP_003534908.1|	-	4.4e-23	81.6	0.0	6.1e-23	81.1	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|292655011|ref|YP_003534908.1|	-	3.1e-07	29.7	0.2	9e-07	28.2	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|292655011|ref|YP_003534908.1|	-	0.00014	21.9	4.5	0.00025	21.1	3.2	1.5	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
DUF3349	PF11829.3	gi|292655011|ref|YP_003534908.1|	-	0.015	15.7	0.1	0.03	14.7	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
Scm3	PF10384.4	gi|292655011|ref|YP_003534908.1|	-	0.061	12.8	0.1	0.6	9.6	0.0	2.5	3	0	0	3	3	3	0	Centromere	protein	Scm3
HHH_8	PF14716.1	gi|292655011|ref|YP_003534908.1|	-	0.074	13.2	0.1	0.19	11.9	0.0	1.8	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|292655011|ref|YP_003534908.1|	-	0.09	12.2	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Ribosomal_S13	PF00416.17	gi|292655011|ref|YP_003534908.1|	-	0.13	12.7	0.0	0.46	10.9	0.0	1.9	2	0	0	2	2	2	0	Ribosomal	protein	S13/S18
TCR_zetazeta	PF11628.3	gi|292655012|ref|YP_003534909.1|	-	0.062	12.7	1.0	0.084	12.3	0.7	1.2	1	0	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	zeta	chain
AAA	PF00004.24	gi|292655013|ref|YP_003534910.1|	-	7.2e-46	155.6	0.0	7.2e-46	155.6	0.0	2.6	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|292655013|ref|YP_003534910.1|	-	7e-10	39.0	0.2	4.7e-09	36.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|292655013|ref|YP_003534910.1|	-	4e-08	33.0	0.4	5.4e-07	29.4	0.3	2.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.7	gi|292655013|ref|YP_003534910.1|	-	6.7e-07	28.5	0.0	1.5e-06	27.4	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|292655013|ref|YP_003534910.1|	-	2e-06	27.9	2.7	4.5e-05	23.5	0.1	2.8	2	2	0	2	2	1	1	AAA	domain
AAA_17	PF13207.1	gi|292655013|ref|YP_003534910.1|	-	2.2e-06	28.4	0.1	1.6e-05	25.6	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292655013|ref|YP_003534910.1|	-	4.4e-06	26.7	2.0	0.00016	21.7	0.1	3.3	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|292655013|ref|YP_003534910.1|	-	5.1e-05	23.1	0.2	0.0006	19.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|292655013|ref|YP_003534910.1|	-	5.3e-05	22.2	0.0	0.00012	21.1	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_24	PF13479.1	gi|292655013|ref|YP_003534910.1|	-	0.00034	20.2	0.9	0.0071	15.9	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|292655013|ref|YP_003534910.1|	-	0.00052	19.7	0.1	0.038	13.6	0.0	2.7	1	1	1	2	2	2	1	NACHT	domain
IstB_IS21	PF01695.12	gi|292655013|ref|YP_003534910.1|	-	0.00079	18.8	0.3	0.0021	17.4	0.0	1.9	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|292655013|ref|YP_003534910.1|	-	0.00086	18.5	0.0	0.0026	16.9	0.0	1.8	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
GrpE	PF01025.14	gi|292655013|ref|YP_003534910.1|	-	0.00095	18.7	9.3	0.0012	18.3	5.0	2.2	2	0	0	2	2	2	1	GrpE
TIP49	PF06068.8	gi|292655013|ref|YP_003534910.1|	-	0.00096	17.9	1.1	0.0029	16.3	0.0	2.2	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_25	PF13481.1	gi|292655013|ref|YP_003534910.1|	-	0.001	18.5	5.9	0.026	13.9	0.1	3.2	2	1	1	3	3	3	1	AAA	domain
AAA_19	PF13245.1	gi|292655013|ref|YP_003534910.1|	-	0.0011	18.6	0.1	0.0033	17.1	0.1	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_18	PF13238.1	gi|292655013|ref|YP_003534910.1|	-	0.0016	18.7	1.6	0.015	15.6	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.21	gi|292655013|ref|YP_003534910.1|	-	0.0018	17.7	0.1	0.028	13.9	0.1	2.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
ATG16	PF08614.6	gi|292655013|ref|YP_003534910.1|	-	0.0029	17.4	9.6	0.0029	17.4	6.7	2.6	2	1	0	2	2	2	1	Autophagy	protein	16	(ATG16)
AAA_33	PF13671.1	gi|292655013|ref|YP_003534910.1|	-	0.003	17.4	0.2	0.01	15.7	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.17	gi|292655013|ref|YP_003534910.1|	-	0.0032	17.6	0.0	0.0097	16.0	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
Creatininase	PF02633.9	gi|292655013|ref|YP_003534910.1|	-	0.0037	16.3	0.0	0.0067	15.5	0.0	1.4	1	0	0	1	1	1	1	Creatinine	amidohydrolase
AAA_28	PF13521.1	gi|292655013|ref|YP_003534910.1|	-	0.0039	17.1	1.6	0.0084	16.0	0.0	2.4	3	2	0	3	3	2	1	AAA	domain
AAA_11	PF13086.1	gi|292655013|ref|YP_003534910.1|	-	0.0052	16.3	1.0	0.22	11.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.6	gi|292655013|ref|YP_003534910.1|	-	0.0054	16.3	0.9	0.06	12.9	0.0	3.0	4	1	0	4	4	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|292655013|ref|YP_003534910.1|	-	0.0054	15.8	0.5	0.016	14.3	0.0	2.0	2	0	0	2	2	2	1	Zeta	toxin
Sigma54_activ_2	PF14532.1	gi|292655013|ref|YP_003534910.1|	-	0.0072	16.3	1.3	0.021	14.8	0.0	2.5	3	1	0	3	3	1	1	Sigma-54	interaction	domain
KaiC	PF06745.8	gi|292655013|ref|YP_003534910.1|	-	0.019	14.1	5.7	0.27	10.3	0.0	3.3	2	1	1	3	3	3	0	KaiC
Arch_ATPase	PF01637.13	gi|292655013|ref|YP_003534910.1|	-	0.023	14.3	3.6	0.12	12.0	0.0	2.9	2	1	0	2	2	2	0	Archaeal	ATPase
IncA	PF04156.9	gi|292655013|ref|YP_003534910.1|	-	0.025	14.1	15.1	0.26	10.8	8.9	2.4	1	1	1	2	2	2	0	IncA	protein
Parvo_NS1	PF01057.12	gi|292655013|ref|YP_003534910.1|	-	0.029	13.2	0.0	0.066	12.0	0.0	1.5	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
bZIP_1	PF00170.16	gi|292655013|ref|YP_003534910.1|	-	0.06	13.3	11.9	0.57	10.1	3.1	2.7	1	1	1	2	2	2	0	bZIP	transcription	factor
AAA_23	PF13476.1	gi|292655013|ref|YP_003534910.1|	-	0.064	13.5	7.3	3.2	8.0	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|292655013|ref|YP_003534910.1|	-	0.089	12.2	0.2	0.44	10.0	0.0	2.1	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NB-ARC	PF00931.17	gi|292655013|ref|YP_003534910.1|	-	0.1	11.4	0.0	0.1	11.4	0.0	2.5	4	0	0	4	4	3	0	NB-ARC	domain
NTPase_1	PF03266.10	gi|292655013|ref|YP_003534910.1|	-	0.2	11.3	7.3	0.47	10.1	0.0	3.7	2	2	1	4	4	4	0	NTPase
ABC_tran	PF00005.22	gi|292655013|ref|YP_003534910.1|	-	0.4	10.9	0.0	0.4	10.9	0.0	2.7	2	1	0	2	2	1	0	ABC	transporter
TMF_DNA_bd	PF12329.3	gi|292655013|ref|YP_003534910.1|	-	0.52	10.1	11.0	2	8.2	7.6	2.0	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fmp27_WPPW	PF10359.4	gi|292655013|ref|YP_003534910.1|	-	0.54	8.6	8.0	0.99	7.7	5.5	1.4	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF904	PF06005.7	gi|292655013|ref|YP_003534910.1|	-	0.63	10.3	13.2	2.6	8.3	8.6	2.5	2	1	0	2	2	1	0	Protein	of	unknown	function	(DUF904)
AAA_10	PF12846.2	gi|292655013|ref|YP_003534910.1|	-	1.1	8.6	5.1	2.2	7.6	0.0	3.1	2	1	0	3	3	3	0	AAA-like	domain
ADIP	PF11559.3	gi|292655013|ref|YP_003534910.1|	-	2.1	8.2	13.7	0.22	11.4	6.0	1.8	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
NPV_P10	PF05531.7	gi|292655013|ref|YP_003534910.1|	-	5	7.4	8.3	44	4.4	3.5	3.1	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Macoilin	PF09726.4	gi|292655013|ref|YP_003534910.1|	-	5.6	5.1	10.7	7.9	4.6	7.4	1.1	1	0	0	1	1	1	0	Transmembrane	protein
AAA_13	PF13166.1	gi|292655013|ref|YP_003534910.1|	-	5.8	5.2	13.7	26	3.0	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AATF-Che1	PF13339.1	gi|292655013|ref|YP_003534910.1|	-	7.1	6.8	10.7	16	5.6	4.1	2.6	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
HTH_24	PF13412.1	gi|292655014|ref|YP_003534911.1|	-	5.4e-06	25.6	0.0	8.1e-06	25.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292655014|ref|YP_003534911.1|	-	5.9e-05	22.6	0.1	9.4e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|292655014|ref|YP_003534911.1|	-	9.6e-05	22.0	0.0	0.00015	21.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|292655014|ref|YP_003534911.1|	-	0.00023	20.5	0.0	0.00033	20.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|292655014|ref|YP_003534911.1|	-	0.00073	19.1	0.0	0.0011	18.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4_2	PF08281.7	gi|292655014|ref|YP_003534911.1|	-	0.0021	17.4	0.0	0.0051	16.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.2	gi|292655014|ref|YP_003534911.1|	-	0.006	16.3	0.0	0.008	15.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|292655014|ref|YP_003534911.1|	-	0.0087	16.0	0.0	0.011	15.7	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292655014|ref|YP_003534911.1|	-	0.01	15.5	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292655014|ref|YP_003534911.1|	-	0.011	15.3	0.0	0.018	14.6	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
Rrf2	PF02082.15	gi|292655014|ref|YP_003534911.1|	-	0.016	15.3	0.0	0.021	14.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|292655014|ref|YP_003534911.1|	-	0.04	13.4	0.0	0.061	12.9	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|292655014|ref|YP_003534911.1|	-	0.063	12.7	0.0	0.076	12.5	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_29	PF13551.1	gi|292655014|ref|YP_003534911.1|	-	0.13	12.4	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Hexapep_2	PF14602.1	gi|292655015|ref|YP_003534912.1|	-	0.25	10.9	4.6	1	8.9	2.0	2.3	1	1	1	2	2	2	0	Hexapeptide	repeat	of	succinyl-transferase
Metallophos_2	PF12850.2	gi|292655016|ref|YP_003534913.1|	-	2.2e-15	56.8	0.1	4e-15	55.9	0.1	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292655016|ref|YP_003534913.1|	-	2.8e-12	46.4	2.8	4.6e-12	45.7	1.9	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Asp-B-Hydro_N	PF05279.6	gi|292655016|ref|YP_003534913.1|	-	0.35	10.6	15.0	0.53	10.0	10.4	1.2	1	0	0	1	1	1	0	Aspartyl	beta-hydroxylase	N-terminal	region
Nop25	PF09805.4	gi|292655016|ref|YP_003534913.1|	-	1.7	8.7	7.3	3.2	7.8	5.1	1.4	1	0	0	1	1	1	0	Nucleolar	protein	12	(25kDa)
AAA_23	PF13476.1	gi|292655017|ref|YP_003534914.1|	-	5.3e-16	59.5	54.8	7.7e-09	36.1	38.0	5.5	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655017|ref|YP_003534914.1|	-	1.2e-12	47.5	38.8	6.7e-12	45.1	26.9	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|292655017|ref|YP_003534914.1|	-	6.2e-10	39.5	0.2	0.00027	20.9	0.0	2.7	3	0	0	3	3	3	2	AAA	domain
DUF3584	PF12128.3	gi|292655017|ref|YP_003534914.1|	-	2.3e-08	31.9	87.1	8.6e-06	23.4	28.7	3.2	3	0	0	3	3	3	3	Protein	of	unknown	function	(DUF3584)
AAA_15	PF13175.1	gi|292655017|ref|YP_003534914.1|	-	1.4e-07	30.9	0.0	0.00016	20.8	0.0	2.7	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_13	PF13166.1	gi|292655017|ref|YP_003534914.1|	-	5.7e-07	28.4	48.0	0.011	14.2	7.7	5.4	2	1	3	5	5	5	3	AAA	domain
AAA_29	PF13555.1	gi|292655017|ref|YP_003534914.1|	-	3.4e-06	26.4	0.0	6.3e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Baculo_PEP_C	PF04513.7	gi|292655017|ref|YP_003534914.1|	-	8.5e-05	22.4	14.0	0.0012	18.6	1.2	5.3	5	1	1	6	6	6	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Atg14	PF10186.4	gi|292655017|ref|YP_003534914.1|	-	0.00029	19.8	8.6	0.00029	19.8	6.0	5.9	1	1	3	5	5	5	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
ABC_tran	PF00005.22	gi|292655017|ref|YP_003534914.1|	-	0.00045	20.5	6.7	0.18	12.0	0.0	4.7	3	2	0	3	3	3	1	ABC	transporter
IncA	PF04156.9	gi|292655017|ref|YP_003534914.1|	-	0.0019	17.8	16.7	0.0019	17.8	11.6	5.3	2	2	3	5	5	4	2	IncA	protein
TMF_TATA_bd	PF12325.3	gi|292655017|ref|YP_003534914.1|	-	0.0042	16.7	12.3	0.0042	16.7	8.5	7.5	3	2	4	8	8	6	1	TATA	element	modulatory	factor	1	TATA	binding
AAA_27	PF13514.1	gi|292655017|ref|YP_003534914.1|	-	0.013	13.2	0.0	0.013	13.2	0.0	4.2	2	1	1	3	3	2	0	AAA	domain
ORF6C	PF10552.4	gi|292655017|ref|YP_003534914.1|	-	0.046	13.4	2.8	9	6.0	0.1	3.9	3	0	0	3	3	3	0	ORF6C	domain
NPV_P10	PF05531.7	gi|292655017|ref|YP_003534914.1|	-	0.68	10.2	24.2	0.72	10.1	0.1	6.2	4	1	2	6	6	6	0	Nucleopolyhedrovirus	P10	protein
Reo_sigmaC	PF04582.7	gi|292655017|ref|YP_003534914.1|	-	2.1	7.4	30.6	0.043	12.9	4.3	4.7	2	1	0	4	4	4	0	Reovirus	sigma	C	capsid	protein
Fzo_mitofusin	PF04799.8	gi|292655017|ref|YP_003534914.1|	-	9.1	5.6	20.8	7.1	5.9	0.1	5.2	3	1	2	6	6	6	0	fzo-like	conserved	region
DUF342	PF03961.8	gi|292655017|ref|YP_003534914.1|	-	9.5	4.5	41.1	0.18	10.2	3.2	5.0	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF342)
Nop14	PF04147.7	gi|292655019|ref|YP_003534916.1|	-	0.044	11.7	1.5	0.06	11.2	1.0	1.3	1	1	0	1	1	1	0	Nop14-like	family
DNA_pol_B	PF00136.16	gi|292655021|ref|YP_003534918.1|	-	9.6e-54	182.8	0.0	1.5e-36	126.2	0.0	2.2	2	0	0	2	2	2	2	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|292655021|ref|YP_003534918.1|	-	9.2e-34	116.7	0.0	2.4e-33	115.4	0.0	1.7	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
LAGLIDADG_3	PF14528.1	gi|292655021|ref|YP_003534918.1|	-	0.048	13.9	0.1	0.23	11.6	0.0	2.2	2	0	0	2	2	2	0	LAGLIDADG-like	domain
ABC_tran	PF00005.22	gi|292655022|ref|YP_003534919.1|	-	7.8e-15	55.3	0.0	3e-14	53.4	0.0	1.9	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|292655022|ref|YP_003534919.1|	-	8.9e-06	25.0	1.0	0.026	13.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|292655022|ref|YP_003534919.1|	-	3.9e-05	23.7	0.3	0.0017	18.4	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292655022|ref|YP_003534919.1|	-	0.00032	21.4	1.1	0.0073	17.1	0.0	2.6	2	2	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|292655022|ref|YP_003534919.1|	-	0.0017	17.8	0.1	0.0031	17.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|292655022|ref|YP_003534919.1|	-	0.002	18.3	0.1	1.6	8.9	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|292655022|ref|YP_003534919.1|	-	0.0037	17.6	0.2	0.14	12.4	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|292655022|ref|YP_003534919.1|	-	0.0089	15.7	0.1	1.9	8.1	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_13	PF13166.1	gi|292655022|ref|YP_003534919.1|	-	0.023	13.1	0.2	0.063	11.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|292655022|ref|YP_003534919.1|	-	0.034	14.2	0.1	1.5	9.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|292655022|ref|YP_003534919.1|	-	0.056	13.3	0.0	0.081	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|292655022|ref|YP_003534919.1|	-	0.065	13.5	0.1	0.23	11.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
MutS_V	PF00488.16	gi|292655022|ref|YP_003534919.1|	-	0.13	11.6	0.0	1.7	7.9	0.0	2.0	2	0	0	2	2	2	0	MutS	domain	V
UPF0051	PF01458.12	gi|292655023|ref|YP_003534920.1|	-	1e-70	237.7	0.8	1.7e-70	237.0	0.5	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.12	gi|292655024|ref|YP_003534921.1|	-	8.8e-66	221.6	1.0	1.1e-65	221.3	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Rubrerythrin	PF02915.12	gi|292655025|ref|YP_003534922.1|	-	2.1e-05	24.8	7.1	2.7e-05	24.4	4.9	1.2	1	0	0	1	1	1	1	Rubrerythrin
DUF445	PF04286.7	gi|292655025|ref|YP_003534922.1|	-	0.0072	15.8	0.3	0.0084	15.6	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
DUF892	PF05974.7	gi|292655025|ref|YP_003534922.1|	-	0.011	15.5	5.0	0.19	11.5	3.4	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
Ferritin_2	PF13668.1	gi|292655025|ref|YP_003534922.1|	-	0.054	13.4	7.2	0.24	11.3	0.9	2.1	1	1	1	2	2	2	0	Ferritin-like	domain
NusB	PF01029.13	gi|292655025|ref|YP_003534922.1|	-	0.078	12.9	1.1	0.11	12.4	0.2	1.6	2	0	0	2	2	2	0	NusB	family
DUF2003	PF09404.5	gi|292655025|ref|YP_003534922.1|	-	0.092	11.1	0.1	0.19	10.1	0.0	1.5	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF2003)
RsbRD_N	PF14361.1	gi|292655025|ref|YP_003534922.1|	-	0.24	11.8	1.7	3	8.3	0.3	2.4	2	1	0	2	2	2	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
Snf7	PF03357.16	gi|292655025|ref|YP_003534922.1|	-	9.6	5.5	9.4	0.92	8.8	1.3	2.3	1	1	0	2	2	2	0	Snf7
Fe_dep_repress	PF01325.14	gi|292655026|ref|YP_003534923.1|	-	2.2e-17	62.7	0.4	1.6e-16	60.0	0.1	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.10	gi|292655026|ref|YP_003534923.1|	-	5.2e-09	35.6	0.0	1e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.2	gi|292655026|ref|YP_003534923.1|	-	0.00013	21.5	0.0	0.00024	20.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|292655026|ref|YP_003534923.1|	-	0.00063	20.0	0.0	0.0012	19.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|292655026|ref|YP_003534923.1|	-	0.0013	18.3	0.0	0.0022	17.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292655026|ref|YP_003534923.1|	-	0.0016	18.0	0.0	0.0028	17.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|292655026|ref|YP_003534923.1|	-	0.0042	16.8	0.0	0.0089	15.8	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|292655026|ref|YP_003534923.1|	-	0.041	13.3	0.0	0.095	12.1	0.0	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.1	gi|292655026|ref|YP_003534923.1|	-	0.097	12.2	0.0	0.14	11.6	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_24	PF13412.1	gi|292655026|ref|YP_003534923.1|	-	0.13	11.6	0.0	0.26	10.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_13	PF11972.3	gi|292655026|ref|YP_003534923.1|	-	0.15	11.9	0.0	0.45	10.4	0.0	1.7	2	0	0	2	2	2	0	HTH	DNA	binding	domain
DDE_Tnp_1	PF01609.16	gi|292655027|ref|YP_003534924.1|	-	4.8e-19	68.7	0.0	6.8e-19	68.2	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|292655027|ref|YP_003534924.1|	-	0.0065	16.4	0.1	0.015	15.3	0.0	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_21	PF05050.7	gi|292655028|ref|YP_003534925.1|	-	5.1e-27	94.8	0.0	6.7e-27	94.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|292655028|ref|YP_003534925.1|	-	4.7e-12	46.4	0.0	6.4e-12	46.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
V_cholerae_RfbT	PF05575.6	gi|292655028|ref|YP_003534925.1|	-	8.1e-09	34.9	0.0	1e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Met_10	PF02475.11	gi|292655028|ref|YP_003534925.1|	-	1.7e-05	24.5	0.1	3.4e-05	23.5	0.0	1.4	1	1	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|292655028|ref|YP_003534925.1|	-	3.1e-05	23.9	0.1	6.1e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292655028|ref|YP_003534925.1|	-	3.6e-05	23.1	0.1	5.9e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_4	PF02390.12	gi|292655028|ref|YP_003534925.1|	-	0.00019	20.5	0.0	0.00027	20.0	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_31	PF13847.1	gi|292655028|ref|YP_003534925.1|	-	0.00074	19.1	0.0	0.0011	18.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|292655028|ref|YP_003534925.1|	-	0.0025	17.3	0.0	0.004	16.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_9	PF08003.6	gi|292655028|ref|YP_003534925.1|	-	0.0066	15.1	0.0	0.0093	14.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_11	PF08241.7	gi|292655028|ref|YP_003534925.1|	-	0.0078	16.6	0.0	0.014	15.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655028|ref|YP_003534925.1|	-	0.0085	16.5	0.0	0.016	15.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655028|ref|YP_003534925.1|	-	0.0094	15.6	0.0	0.051	13.2	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|292655028|ref|YP_003534925.1|	-	0.015	14.7	0.0	0.021	14.2	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
PrmA	PF06325.8	gi|292655028|ref|YP_003534925.1|	-	0.021	13.9	0.4	0.034	13.2	0.3	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_2	PF00891.13	gi|292655028|ref|YP_003534925.1|	-	0.074	12.2	0.2	0.12	11.5	0.1	1.2	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_3	PF01596.12	gi|292655028|ref|YP_003534925.1|	-	0.15	11.0	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
GidB	PF02527.10	gi|292655028|ref|YP_003534925.1|	-	0.16	11.0	0.0	0.24	10.5	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
tRNA-synt_2c	PF01411.14	gi|292655029|ref|YP_003534926.1|	-	3.9e-10	38.6	0.0	5e-10	38.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|292655029|ref|YP_003534926.1|	-	1.9e-08	34.0	0.1	3.2e-08	33.3	0.1	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
HD	PF01966.17	gi|292655030|ref|YP_003534927.1|	-	7.2e-17	61.5	1.5	1.8e-16	60.2	0.3	1.9	2	0	0	2	2	2	1	HD	domain
XylR_N	PF06505.6	gi|292655030|ref|YP_003534927.1|	-	0.056	12.8	0.1	0.17	11.3	0.1	1.7	2	0	0	2	2	2	0	Activator	of	aromatic	catabolism
HD_4	PF13328.1	gi|292655030|ref|YP_003534927.1|	-	0.074	12.7	0.1	0.18	11.5	0.1	1.5	1	0	0	1	1	1	0	HD	domain
TraI_2	PF07514.6	gi|292655030|ref|YP_003534927.1|	-	0.11	11.1	0.1	0.31	9.7	0.1	1.7	2	1	0	2	2	2	0	Putative	helicase
Epimerase	PF01370.16	gi|292655031|ref|YP_003534928.1|	-	7.5e-34	117.1	0.2	9.4e-32	110.3	0.1	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|292655031|ref|YP_003534928.1|	-	7.6e-11	42.3	0.1	1.5e-10	41.3	0.1	1.5	1	0	0	1	1	1	1	NADH(P)-binding
3Beta_HSD	PF01073.14	gi|292655031|ref|YP_003534928.1|	-	2.9e-09	36.0	0.0	4e-07	29.0	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|292655031|ref|YP_003534928.1|	-	1.4e-07	30.6	0.2	0.0042	16.0	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|292655031|ref|YP_003534928.1|	-	1.3e-05	24.3	0.0	0.015	14.2	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.8	gi|292655031|ref|YP_003534928.1|	-	0.0088	15.3	0.1	0.029	13.6	0.0	1.8	2	0	0	2	2	2	1	NmrA-like	family
adh_short	PF00106.20	gi|292655031|ref|YP_003534928.1|	-	0.031	14.1	2.2	0.045	13.6	0.0	2.4	3	1	1	4	4	4	0	short	chain	dehydrogenase
TrkA_N	PF02254.13	gi|292655031|ref|YP_003534928.1|	-	0.055	13.4	0.0	0.18	11.8	0.0	1.8	2	0	0	2	2	2	0	TrkA-N	domain
Glu_synthase	PF01645.12	gi|292655032|ref|YP_003534929.1|	-	2e-152	507.3	0.3	5.7e-151	502.5	0.0	2.2	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
GATase_2	PF00310.16	gi|292655032|ref|YP_003534929.1|	-	1.3e-124	415.5	0.0	3.1e-124	414.3	0.0	1.6	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Glu_syn_central	PF04898.9	gi|292655032|ref|YP_003534929.1|	-	2e-109	365.3	0.0	3.5e-109	364.5	0.0	1.4	1	0	0	1	1	1	1	Glutamate	synthase	central	domain
GXGXG	PF01493.14	gi|292655032|ref|YP_003534929.1|	-	3.4e-58	195.9	8.2	6.3e-58	195.1	5.7	1.4	1	0	0	1	1	1	1	GXGXG	motif
GATase_6	PF13522.1	gi|292655032|ref|YP_003534929.1|	-	0.028	14.3	0.9	0.46	10.4	0.0	3.1	4	0	0	4	4	4	0	Glutamine	amidotransferase	domain
ProRS-C_1	PF09180.6	gi|292655033|ref|YP_003534930.1|	-	4.4e-21	74.5	0.2	1e-20	73.4	0.2	1.7	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
HGTP_anticodon	PF03129.15	gi|292655033|ref|YP_003534930.1|	-	8.8e-21	73.6	1.0	1.2e-20	73.2	0.1	1.7	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.20	gi|292655033|ref|YP_003534930.1|	-	1.9e-17	63.4	0.0	3.2e-17	62.6	0.0	1.6	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Beta-Casp	PF10996.3	gi|292655037|ref|YP_003534934.1|	-	3e-32	111.2	0.0	5.9e-32	110.2	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|292655037|ref|YP_003534934.1|	-	4.5e-23	81.9	2.7	8.7e-23	80.9	1.9	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|292655037|ref|YP_003534934.1|	-	1.2e-14	53.8	0.0	3.6e-14	52.3	0.0	1.9	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|292655037|ref|YP_003534934.1|	-	1.5e-10	40.9	0.4	3.5e-10	39.7	0.1	1.7	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.12	gi|292655037|ref|YP_003534934.1|	-	2.3e-08	33.4	0.2	2.1e-06	27.1	0.0	2.7	2	1	0	2	2	2	1	KH	domain
KH_1	PF00013.24	gi|292655037|ref|YP_003534934.1|	-	8.4e-05	22.1	0.1	0.0003	20.3	0.1	2.0	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.1	gi|292655037|ref|YP_003534934.1|	-	0.00022	20.9	0.0	0.00049	19.8	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.1	gi|292655037|ref|YP_003534934.1|	-	0.011	15.3	0.0	0.027	14.0	0.0	1.6	1	0	0	1	1	1	0	KH	domain
KH_3	PF13014.1	gi|292655037|ref|YP_003534934.1|	-	0.1	12.2	1.4	0.15	11.7	0.1	2.0	2	0	0	2	2	2	0	KH	domain
DUF1628	PF07790.6	gi|292655038|ref|YP_003534935.1|	-	1.2e-06	29.1	7.2	2.2e-06	28.3	3.7	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1628)
DUF4307	PF14155.1	gi|292655038|ref|YP_003534935.1|	-	1.6	8.5	5.5	11	5.8	1.7	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
MGS	PF02142.17	gi|292655039|ref|YP_003534936.1|	-	1e-13	51.0	0.0	1.2e-13	50.7	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
HhH-GPD	PF00730.20	gi|292655041|ref|YP_003534938.1|	-	9.2e-20	70.9	0.0	1.4e-19	70.3	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
EndIII_4Fe-2S	PF10576.4	gi|292655041|ref|YP_003534938.1|	-	0.00025	21.0	6.1	0.00061	19.8	4.2	1.7	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH	PF00633.18	gi|292655041|ref|YP_003534938.1|	-	0.0087	15.7	0.0	0.039	13.6	0.0	2.2	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
PRiA4_ORF3	PF07929.6	gi|292655041|ref|YP_003534938.1|	-	0.021	14.2	0.3	0.045	13.1	0.1	1.6	2	0	0	2	2	2	0	Plasmid	pRiA4b	ORF-3-like	protein
DUF2400	PF09674.5	gi|292655041|ref|YP_003534938.1|	-	0.13	11.9	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2400)
DUF371	PF04027.8	gi|292655042|ref|YP_003534939.1|	-	3.7e-47	159.2	0.1	4.2e-47	159.1	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
DUF948	PF06103.6	gi|292655043|ref|YP_003534940.1|	-	2.6	7.9	18.5	3.2	7.6	1.0	4.3	2	2	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
Reo_sigmaC	PF04582.7	gi|292655043|ref|YP_003534940.1|	-	6.4	5.8	6.3	6.5	5.8	1.3	2.1	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
Peptidase_S49	PF01343.13	gi|292655044|ref|YP_003534941.1|	-	7.1e-41	139.5	0.0	1.1e-40	138.9	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S49
SDH_sah	PF01972.11	gi|292655044|ref|YP_003534941.1|	-	0.00078	18.3	0.0	0.0011	17.8	0.0	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
CLP_protease	PF00574.18	gi|292655044|ref|YP_003534941.1|	-	0.0021	17.7	0.0	0.15	11.7	0.0	2.2	2	0	0	2	2	2	1	Clp	protease
Cytidylate_kin	PF02224.13	gi|292655044|ref|YP_003534941.1|	-	0.081	12.3	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	Cytidylate	kinase
ECH	PF00378.15	gi|292655044|ref|YP_003534941.1|	-	0.095	11.8	1.8	9.8	5.2	0.0	3.2	3	0	0	3	3	3	0	Enoyl-CoA	hydratase/isomerase	family
EAP30	PF04157.11	gi|292655044|ref|YP_003534941.1|	-	0.1	11.7	0.0	0.14	11.2	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
DUF373	PF04123.8	gi|292655045|ref|YP_003534942.1|	-	4.8e-111	371.1	5.0	5.4e-111	370.9	3.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
DUF872	PF05915.7	gi|292655046|ref|YP_003534943.1|	-	0.16	11.8	1.4	0.19	11.5	0.9	1.1	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF1469	PF07332.6	gi|292655046|ref|YP_003534943.1|	-	0.94	9.2	7.2	1.2	8.9	5.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
IncA	PF04156.9	gi|292655046|ref|YP_003534943.1|	-	1.6	8.2	9.9	2	7.9	6.9	1.0	1	0	0	1	1	1	0	IncA	protein
CcoS	PF03597.10	gi|292655046|ref|YP_003534943.1|	-	3.5	7.1	4.9	2.2	7.7	0.1	2.3	2	0	0	2	2	2	0	Cytochrome	oxidase	maturation	protein	cbb3-type
DUF2613	PF11021.3	gi|292655046|ref|YP_003534943.1|	-	9.8	5.9	9.7	5.7	6.7	5.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2613)
Aldo_ket_red	PF00248.16	gi|292655047|ref|YP_003534944.1|	-	4.8e-66	222.4	0.1	5.8e-66	222.1	0.1	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
COX5B	PF01215.14	gi|292655048|ref|YP_003534945.1|	-	0.0028	17.3	0.0	0.0031	17.1	0.0	1.2	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	Vb
Elf1	PF05129.8	gi|292655048|ref|YP_003534945.1|	-	0.012	15.2	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
TFIIS_C	PF01096.13	gi|292655048|ref|YP_003534945.1|	-	0.021	14.4	0.5	6.9	6.3	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-ribbon_3	PF13248.1	gi|292655048|ref|YP_003534945.1|	-	0.026	13.7	1.7	0.065	12.4	1.2	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|292655048|ref|YP_003534945.1|	-	0.029	14.0	0.2	5.4	6.7	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292655048|ref|YP_003534945.1|	-	0.035	13.6	1.1	4.1	7.0	0.0	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
CpXC	PF14353.1	gi|292655048|ref|YP_003534945.1|	-	0.15	12.0	0.4	4	7.4	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.5	gi|292655048|ref|YP_003534945.1|	-	0.19	11.7	2.0	0.47	10.4	1.4	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|292655048|ref|YP_003534945.1|	-	0.21	11.1	1.9	0.77	9.2	1.3	1.9	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
TF_Zn_Ribbon	PF08271.7	gi|292655048|ref|YP_003534945.1|	-	1.2	8.5	4.7	3.2	7.1	3.4	1.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-HIT	PF04438.11	gi|292655048|ref|YP_003534945.1|	-	1.3	8.7	4.5	9.7	5.9	0.2	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
TPP_enzyme_C	PF02775.16	gi|292655050|ref|YP_003534947.1|	-	6.2e-31	107.0	0.5	9.3e-31	106.4	0.3	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|292655050|ref|YP_003534947.1|	-	2.9e-17	62.3	0.3	5.9e-17	61.3	0.2	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
POR_N	PF01855.14	gi|292655051|ref|YP_003534948.1|	-	2.5e-59	200.5	0.3	3.9e-59	199.9	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|292655051|ref|YP_003534948.1|	-	1.5e-42	145.3	0.5	3.3e-42	144.3	0.3	1.6	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.13	gi|292655051|ref|YP_003534948.1|	-	1.8e-06	27.5	0.5	3.7e-06	26.5	0.3	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
FAD_binding_6	PF00970.19	gi|292655052|ref|YP_003534949.1|	-	3.3e-12	46.3	0.0	4.8e-12	45.8	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
ABC2_membrane_2	PF12679.2	gi|292655053|ref|YP_003534950.1|	-	1.2e-10	40.6	16.2	2.8e-10	39.5	11.2	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|292655053|ref|YP_003534950.1|	-	2.4e-06	26.8	5.7	4.2e-06	26.0	3.9	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|292655053|ref|YP_003534950.1|	-	5.8e-06	25.6	6.5	1.8e-05	23.9	4.5	1.8	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|292655053|ref|YP_003534950.1|	-	1.6e-05	24.1	8.9	1.9e-05	23.8	6.2	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
DUF3945	PF13101.1	gi|292655053|ref|YP_003534950.1|	-	0.2	10.9	0.0	0.32	10.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3945)
ABC_tran	PF00005.22	gi|292655054|ref|YP_003534951.1|	-	1.9e-28	99.4	0.0	2.5e-28	99.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655054|ref|YP_003534951.1|	-	8.8e-16	58.7	0.0	3e-08	34.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292655054|ref|YP_003534951.1|	-	1.7e-05	24.2	0.1	3.6e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|292655054|ref|YP_003534951.1|	-	6.1e-05	23.0	0.1	0.0001	22.3	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|292655054|ref|YP_003534951.1|	-	0.00015	21.6	0.0	0.0005	19.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292655054|ref|YP_003534951.1|	-	0.00018	20.9	0.9	0.00044	19.7	0.4	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292655054|ref|YP_003534951.1|	-	0.00021	20.8	0.0	0.07	12.5	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_17	PF13207.1	gi|292655054|ref|YP_003534951.1|	-	0.00062	20.5	0.0	0.0011	19.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292655054|ref|YP_003534951.1|	-	0.0011	19.1	0.0	0.0086	16.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|292655054|ref|YP_003534951.1|	-	0.0011	19.2	0.0	0.0016	18.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|292655054|ref|YP_003534951.1|	-	0.0014	18.2	0.2	0.012	15.1	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655054|ref|YP_003534951.1|	-	0.0016	17.6	0.0	0.047	12.9	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
MobB	PF03205.9	gi|292655054|ref|YP_003534951.1|	-	0.0039	16.8	0.0	0.0081	15.8	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_13	PF13166.1	gi|292655054|ref|YP_003534951.1|	-	0.0087	14.5	0.0	0.24	9.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|292655054|ref|YP_003534951.1|	-	0.0099	15.7	1.0	0.72	9.8	0.0	3.7	2	1	1	3	3	3	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_28	PF13521.1	gi|292655054|ref|YP_003534951.1|	-	0.013	15.4	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|292655054|ref|YP_003534951.1|	-	0.016	14.8	0.0	0.024	14.3	0.0	1.2	1	0	0	1	1	1	0	NACHT	domain
DUF258	PF03193.11	gi|292655054|ref|YP_003534951.1|	-	0.024	13.8	0.0	0.04	13.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|292655054|ref|YP_003534951.1|	-	0.043	12.8	0.0	2.3	7.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|292655054|ref|YP_003534951.1|	-	0.049	13.6	0.0	0.072	13.0	0.0	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.1	gi|292655054|ref|YP_003534951.1|	-	0.061	13.6	0.0	0.12	12.6	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
cobW	PF02492.14	gi|292655054|ref|YP_003534951.1|	-	0.084	12.3	0.1	0.25	10.7	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_ATPase	PF09818.4	gi|292655054|ref|YP_003534951.1|	-	0.086	11.4	0.1	1.6	7.1	0.0	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
UPF0079	PF02367.12	gi|292655054|ref|YP_003534951.1|	-	0.088	12.4	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_14	PF13173.1	gi|292655054|ref|YP_003534951.1|	-	0.097	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|292655054|ref|YP_003534951.1|	-	0.12	12.1	0.0	0.29	10.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NosD	PF05048.8	gi|292655055|ref|YP_003534952.1|	-	1.5e-31	109.4	0.0	1.4e-29	102.9	0.0	2.2	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.1	gi|292655055|ref|YP_003534952.1|	-	7.7e-21	74.4	4.9	1.2e-11	44.5	1.3	2.4	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.7	gi|292655055|ref|YP_003534952.1|	-	3e-13	49.7	0.1	9.1e-13	48.1	0.0	1.8	2	0	0	2	2	2	1	NosL
Pectate_lyase_3	PF12708.2	gi|292655055|ref|YP_003534952.1|	-	8.5e-11	42.4	3.7	2e-08	34.6	2.6	2.4	1	1	0	1	1	1	1	Pectate	lyase	superfamily	protein
DUF1565	PF07602.6	gi|292655055|ref|YP_003534952.1|	-	0.0001	21.5	0.8	0.03	13.4	0.0	3.1	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1565)
MM_CoA_mutase	PF01642.17	gi|292655056|ref|YP_003534953.1|	-	9.8e-188	624.4	0.1	1.1e-187	624.2	0.1	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Met_asp_mut_E	PF06368.6	gi|292655056|ref|YP_003534953.1|	-	0.036	12.2	0.1	0.051	11.7	0.0	1.1	1	0	0	1	1	1	0	Methylaspartate	mutase	E	chain	(MutE)
AMP-binding	PF00501.23	gi|292655057|ref|YP_003534954.1|	-	3.2e-93	312.3	0.0	3.8e-93	312.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655057|ref|YP_003534954.1|	-	1.9e-17	63.9	0.5	4.3e-17	62.8	0.3	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.23	gi|292655059|ref|YP_003534956.1|	-	1.4e-91	307.0	0.7	1.6e-91	306.7	0.5	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655059|ref|YP_003534956.1|	-	9.8e-20	71.2	0.2	4.2e-19	69.2	0.2	2.2	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
TAT_signal	PF10518.4	gi|292655060|ref|YP_003534957.1|	-	0.22	11.6	4.2	0.25	11.4	1.0	2.2	1	1	1	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_6	PF13458.1	gi|292655062|ref|YP_003534959.1|	-	1.3e-63	215.4	9.0	1.7e-63	215.0	6.3	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|292655062|ref|YP_003534959.1|	-	4.1e-24	85.0	0.2	5.5e-24	84.5	0.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.23	gi|292655062|ref|YP_003534959.1|	-	2.1e-08	33.3	0.3	2.9e-08	32.8	0.2	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.4	gi|292655062|ref|YP_003534959.1|	-	0.00034	20.3	2.0	0.0015	18.3	1.4	2.2	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292655062|ref|YP_003534959.1|	-	0.025	13.7	0.5	0.055	12.6	0.3	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_2	PF02653.11	gi|292655063|ref|YP_003534960.1|	-	5.9e-34	117.2	37.0	7.1e-34	116.9	25.6	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Pam17	PF08566.5	gi|292655063|ref|YP_003534960.1|	-	0.87	9.2	2.9	1.7	8.3	2.0	1.4	1	0	0	1	1	1	0	Mitochondrial	import	protein	Pam17
BPD_transp_2	PF02653.11	gi|292655064|ref|YP_003534961.1|	-	2.3e-32	112.0	41.5	3.8e-32	111.3	28.7	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|292655065|ref|YP_003534962.1|	-	6.2e-31	107.5	0.0	7.9e-31	107.1	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.3	gi|292655065|ref|YP_003534962.1|	-	5.5e-12	45.0	0.6	1.3e-11	43.8	0.4	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_21	PF13304.1	gi|292655065|ref|YP_003534962.1|	-	1.7e-08	34.8	0.4	0.0023	17.9	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292655065|ref|YP_003534962.1|	-	4.8e-05	22.8	0.0	8.8e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|292655065|ref|YP_003534962.1|	-	0.00044	19.7	0.1	0.042	13.2	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
MMR_HSR1	PF01926.18	gi|292655065|ref|YP_003534962.1|	-	0.00048	20.0	0.1	0.001	19.0	0.1	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|292655065|ref|YP_003534962.1|	-	0.0006	20.1	0.0	0.00075	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|292655065|ref|YP_003534962.1|	-	0.0011	18.2	0.0	0.0015	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|292655065|ref|YP_003534962.1|	-	0.0011	18.0	0.0	0.36	9.8	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_17	PF13207.1	gi|292655065|ref|YP_003534962.1|	-	0.0016	19.2	0.2	0.0025	18.6	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655065|ref|YP_003534962.1|	-	0.0025	17.0	0.1	0.0031	16.7	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|292655065|ref|YP_003534962.1|	-	0.019	13.5	0.0	0.61	8.5	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.1	gi|292655065|ref|YP_003534962.1|	-	0.02	14.8	0.1	0.042	13.8	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|292655065|ref|YP_003534962.1|	-	0.023	15.0	0.0	0.053	13.8	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_30	PF13604.1	gi|292655065|ref|YP_003534962.1|	-	0.023	14.2	0.0	0.046	13.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|292655065|ref|YP_003534962.1|	-	0.029	14.1	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_28	PF13521.1	gi|292655065|ref|YP_003534962.1|	-	0.039	13.9	0.0	0.095	12.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|292655065|ref|YP_003534962.1|	-	0.043	13.5	0.0	0.12	12.0	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.17	gi|292655065|ref|YP_003534962.1|	-	0.067	13.3	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.7	gi|292655065|ref|YP_003534962.1|	-	0.074	12.1	0.0	0.12	11.4	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_22	PF13401.1	gi|292655065|ref|YP_003534962.1|	-	0.077	13.1	0.1	0.27	11.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|292655065|ref|YP_003534962.1|	-	0.092	11.5	0.4	0.45	9.2	0.1	2.2	2	1	0	2	2	2	0	ArgK	protein
AAA_13	PF13166.1	gi|292655065|ref|YP_003534962.1|	-	0.097	11.1	0.0	0.12	10.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|292655065|ref|YP_003534962.1|	-	0.12	12.8	0.0	0.19	12.1	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
DAGAT	PF03982.8	gi|292655065|ref|YP_003534962.1|	-	0.14	10.8	0.0	0.23	10.0	0.0	1.3	1	0	0	1	1	1	0	Diacylglycerol	acyltransferase
ABC_tran	PF00005.22	gi|292655066|ref|YP_003534963.1|	-	5.8e-30	104.3	0.0	8e-30	103.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655066|ref|YP_003534963.1|	-	2.2e-09	37.6	0.0	2.9e-07	30.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|292655066|ref|YP_003534963.1|	-	0.0003	21.1	0.0	0.00038	20.8	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|292655066|ref|YP_003534963.1|	-	0.00065	18.2	0.0	0.0067	14.9	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|292655066|ref|YP_003534963.1|	-	0.00081	19.1	0.1	0.16	11.7	0.0	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
SbcCD_C	PF13558.1	gi|292655066|ref|YP_003534963.1|	-	0.00091	19.0	0.2	0.005	16.7	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_22	PF13401.1	gi|292655066|ref|YP_003534963.1|	-	0.0067	16.5	0.0	0.27	11.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|292655066|ref|YP_003534963.1|	-	0.014	14.8	0.1	0.042	13.3	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.4	gi|292655066|ref|YP_003534963.1|	-	0.028	13.0	0.2	2	6.9	0.0	2.3	3	0	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
UPF0079	PF02367.12	gi|292655066|ref|YP_003534963.1|	-	0.043	13.4	0.0	0.081	12.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_16	PF13191.1	gi|292655066|ref|YP_003534963.1|	-	0.045	13.7	0.2	0.26	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
SMC_N	PF02463.14	gi|292655066|ref|YP_003534963.1|	-	0.078	12.1	0.0	8.2	5.5	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|292655066|ref|YP_003534963.1|	-	0.093	11.9	0.0	0.19	10.9	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|292655066|ref|YP_003534963.1|	-	0.1	12.0	0.0	0.76	9.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Thioredoxin	PF00085.15	gi|292655067|ref|YP_003534964.1|	-	8.3e-13	47.9	0.0	1.3e-12	47.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
HyaE	PF07449.6	gi|292655067|ref|YP_003534964.1|	-	7e-05	22.6	0.0	0.00017	21.4	0.0	1.6	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_2	PF13098.1	gi|292655067|ref|YP_003534964.1|	-	0.0021	18.2	0.0	0.014	15.5	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
PqqD	PF05402.7	gi|292655067|ref|YP_003534964.1|	-	0.11	12.5	4.1	14	5.8	0.0	4.1	6	0	0	6	6	6	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Usp	PF00582.21	gi|292655068|ref|YP_003534965.1|	-	2.4e-22	79.6	0.3	2.8e-22	79.4	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
FtsX	PF02687.16	gi|292655069|ref|YP_003534966.1|	-	1.2	8.9	7.9	1.6	8.5	5.5	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
FeoB_C	PF07664.7	gi|292655069|ref|YP_003534966.1|	-	9.1	5.7	8.7	0.23	10.9	1.3	1.8	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
COX1	PF00115.15	gi|292655070|ref|YP_003534967.1|	-	5.1e-154	513.1	58.5	5.1e-154	513.1	40.6	1.4	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cyt_c_ox_IV	PF12270.3	gi|292655072|ref|YP_003534969.1|	-	0.025	14.3	0.4	0.025	14.3	0.3	2.1	1	1	1	2	2	2	0	Cytochrome	c	oxidase	subunit	IV
MMR_HSR1	PF01926.18	gi|292655074|ref|YP_003534971.1|	-	9e-21	73.9	0.0	1.8e-20	73.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|292655074|ref|YP_003534971.1|	-	2.6e-14	52.7	0.4	2.2e-12	46.5	0.0	2.3	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
TGS	PF02824.16	gi|292655074|ref|YP_003534971.1|	-	1.3e-12	47.3	0.1	2.8e-12	46.2	0.1	1.6	1	0	0	1	1	1	1	TGS	domain
Dynamin_N	PF00350.18	gi|292655074|ref|YP_003534971.1|	-	1.8e-05	24.6	0.0	0.058	13.2	0.0	2.5	1	1	1	2	2	2	2	Dynamin	family
ArgK	PF03308.11	gi|292655074|ref|YP_003534971.1|	-	0.00012	20.9	1.0	0.0024	16.6	0.1	2.7	2	1	0	2	2	2	1	ArgK	protein
AIG1	PF04548.11	gi|292655074|ref|YP_003534971.1|	-	0.00022	20.4	0.1	0.00047	19.3	0.0	1.5	2	0	0	2	2	2	1	AIG1	family
ATP_bind_1	PF03029.12	gi|292655074|ref|YP_003534971.1|	-	0.00026	20.6	0.0	0.62	9.5	0.0	2.3	2	0	0	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU	PF00009.22	gi|292655074|ref|YP_003534971.1|	-	0.00036	20.0	0.1	0.041	13.3	0.0	2.9	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Miro	PF08477.8	gi|292655074|ref|YP_003534971.1|	-	0.00042	20.7	0.0	0.0013	19.1	0.0	1.9	2	0	0	2	2	1	1	Miro-like	protein
DUF258	PF03193.11	gi|292655074|ref|YP_003534971.1|	-	0.0015	17.7	0.4	0.0061	15.7	0.1	2.3	3	1	0	3	3	3	1	Protein	of	unknown	function,	DUF258
Arf	PF00025.16	gi|292655074|ref|YP_003534971.1|	-	0.0029	16.8	0.2	0.027	13.6	0.1	2.4	2	1	0	2	2	2	1	ADP-ribosylation	factor	family
ABC_tran	PF00005.22	gi|292655074|ref|YP_003534971.1|	-	0.0057	16.9	0.0	0.084	13.1	0.0	2.3	2	0	0	2	2	2	1	ABC	transporter
AAA_16	PF13191.1	gi|292655074|ref|YP_003534971.1|	-	0.0062	16.5	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.1	gi|292655074|ref|YP_003534971.1|	-	0.013	15.5	0.0	0.033	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|292655074|ref|YP_003534971.1|	-	0.018	14.4	0.4	1.9	7.8	0.0	2.6	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
PduV-EutP	PF10662.4	gi|292655074|ref|YP_003534971.1|	-	0.032	13.7	0.0	1.4	8.3	0.0	2.4	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ThiS	PF02597.15	gi|292655074|ref|YP_003534971.1|	-	0.035	14.5	0.4	0.94	9.9	0.0	3.2	3	1	0	3	3	2	0	ThiS	family
AAA_29	PF13555.1	gi|292655074|ref|YP_003534971.1|	-	0.05	13.1	0.4	0.13	11.8	0.3	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|292655074|ref|YP_003534971.1|	-	0.087	13.6	1.9	0.55	11.0	0.5	3.1	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|292655074|ref|YP_003534971.1|	-	0.1	12.9	0.3	0.76	10.0	0.2	2.4	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|292655074|ref|YP_003534971.1|	-	0.1	12.2	0.0	0.22	11.2	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRPRB	PF09439.5	gi|292655074|ref|YP_003534971.1|	-	0.19	10.9	0.9	0.32	10.1	0.0	1.8	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Filament	PF00038.16	gi|292655074|ref|YP_003534971.1|	-	0.67	9.3	3.0	4.5	6.6	2.1	2.1	1	1	0	1	1	1	0	Intermediate	filament	protein
DUF3529	PF12046.3	gi|292655075|ref|YP_003534972.1|	-	0.13	11.3	2.2	0.13	11.2	0.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3529)
DUF4131	PF13567.1	gi|292655075|ref|YP_003534972.1|	-	7.4	5.9	9.2	1.6	8.0	1.7	2.3	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
MatE	PF01554.13	gi|292655076|ref|YP_003534973.1|	-	5.3e-42	143.1	23.7	7.3e-23	80.9	6.2	2.5	3	0	0	3	3	3	2	MatE
MVIN	PF03023.9	gi|292655076|ref|YP_003534973.1|	-	1.5e-10	40.1	3.4	3e-08	32.5	2.1	2.3	2	0	0	2	2	2	2	MviN-like	protein
Polysacc_synt_C	PF14667.1	gi|292655076|ref|YP_003534973.1|	-	1.8e-09	37.5	4.6	1.8e-09	37.5	3.2	3.6	4	0	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Glyoxalase_2	PF12681.2	gi|292655077|ref|YP_003534974.1|	-	5.2e-25	88.1	5.6	3.2e-14	53.4	0.2	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|292655077|ref|YP_003534974.1|	-	8.2e-22	77.5	4.5	5e-14	52.3	0.1	2.3	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|292655077|ref|YP_003534974.1|	-	5.6e-12	45.6	2.9	1.3e-05	25.1	0.2	3.1	2	2	2	4	4	4	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|292655077|ref|YP_003534974.1|	-	0.00014	21.8	0.9	0.15	11.9	0.0	3.6	2	2	0	2	2	2	2	Glyoxalase-like	domain
Exosortase_EpsH	PF09721.5	gi|292655078|ref|YP_003534975.1|	-	4.1e-45	154.0	23.2	5.2e-45	153.7	16.1	1.0	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
Lig_chan	PF00060.21	gi|292655078|ref|YP_003534975.1|	-	0.27	10.9	1.0	0.55	9.9	0.7	1.4	1	0	0	1	1	1	0	Ligand-gated	ion	channel
TP_methylase	PF00590.15	gi|292655079|ref|YP_003534976.1|	-	4.1e-15	56.0	0.4	5.2e-15	55.7	0.3	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DoxX	PF07681.7	gi|292655080|ref|YP_003534977.1|	-	7.5e-09	35.9	7.5	2e-08	34.5	5.2	1.7	1	1	0	1	1	1	1	DoxX
DoxD	PF04173.8	gi|292655080|ref|YP_003534977.1|	-	8.3e-05	22.3	3.6	0.00012	21.7	2.5	1.3	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
DUF1700	PF08006.6	gi|292655080|ref|YP_003534977.1|	-	0.29	10.4	1.9	0.41	9.9	1.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
Prim_Zn_Ribbon	PF08273.7	gi|292655081|ref|YP_003534978.1|	-	0.12	12.4	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Nudix_N_2	PF14803.1	gi|292655082|ref|YP_003534979.1|	-	9.4e-05	22.0	1.1	0.00011	21.8	0.7	1.1	1	0	0	1	1	1	1	Nudix	N-terminal
GATA	PF00320.22	gi|292655082|ref|YP_003534979.1|	-	0.0017	17.6	0.9	0.0022	17.3	0.6	1.2	1	0	0	1	1	1	1	GATA	zinc	finger
zf-CHY	PF05495.7	gi|292655082|ref|YP_003534979.1|	-	0.025	14.7	0.5	0.028	14.5	0.4	1.1	1	0	0	1	1	1	0	CHY	zinc	finger
Zn_Tnp_IS1	PF03811.8	gi|292655082|ref|YP_003534979.1|	-	0.051	13.0	4.4	0.13	11.8	3.1	1.7	1	1	0	1	1	1	0	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|292655082|ref|YP_003534979.1|	-	0.066	13.1	1.1	0.22	11.5	0.8	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_6	PF14599.1	gi|292655082|ref|YP_003534979.1|	-	0.074	12.8	2.7	0.86	9.4	0.4	2.0	1	1	1	2	2	2	0	Zinc-ribbon
zf-RING_3	PF14369.1	gi|292655082|ref|YP_003534979.1|	-	0.075	13.0	3.3	0.1	12.5	2.3	1.4	1	1	0	1	1	1	0	zinc-finger
zf-ISL3	PF14690.1	gi|292655082|ref|YP_003534979.1|	-	0.079	13.0	2.4	0.43	10.6	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
HypA	PF01155.14	gi|292655082|ref|YP_003534979.1|	-	0.1	12.3	0.6	0.11	12.2	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS1595	PF12760.2	gi|292655082|ref|YP_003534979.1|	-	0.11	12.2	1.1	0.14	12.0	0.7	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292655082|ref|YP_003534979.1|	-	0.26	11.6	1.7	0.87	9.9	1.2	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.6	gi|292655082|ref|YP_003534979.1|	-	0.33	10.6	2.7	0.42	10.2	1.9	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.13	gi|292655082|ref|YP_003534979.1|	-	0.77	9.4	3.9	13	5.5	2.7	2.0	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
RRN7	PF11781.3	gi|292655082|ref|YP_003534979.1|	-	0.99	8.9	4.9	1.1	8.8	0.3	2.1	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Rieske	PF00355.21	gi|292655083|ref|YP_003534980.1|	-	5.8e-11	41.8	0.0	8.1e-11	41.3	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
HTH_24	PF13412.1	gi|292655084|ref|YP_003534981.1|	-	2.3e-17	62.1	0.3	3.5e-17	61.5	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292655084|ref|YP_003534981.1|	-	4.5e-14	51.7	1.3	4.5e-14	51.7	0.9	1.7	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292655084|ref|YP_003534981.1|	-	6.5e-08	32.2	0.1	1.2e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655084|ref|YP_003534981.1|	-	7.3e-08	31.9	0.0	1.4e-07	31.0	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|292655084|ref|YP_003534981.1|	-	3.6e-07	29.6	0.2	7.5e-07	28.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655084|ref|YP_003534981.1|	-	3.9e-07	29.6	0.0	6.4e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|292655084|ref|YP_003534981.1|	-	6.2e-07	28.9	0.1	1.2e-06	28.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|292655084|ref|YP_003534981.1|	-	8.9e-06	25.0	0.1	1.8e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.14	gi|292655084|ref|YP_003534981.1|	-	2e-05	23.8	0.0	3.5e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
EAP30	PF04157.11	gi|292655084|ref|YP_003534981.1|	-	3.1e-05	23.2	0.0	5.3e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	EAP30/Vps36	family
HTH_23	PF13384.1	gi|292655084|ref|YP_003534981.1|	-	0.00014	21.4	0.1	0.00024	20.6	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR	PF01047.17	gi|292655084|ref|YP_003534981.1|	-	0.00027	20.5	0.0	0.00047	19.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|292655084|ref|YP_003534981.1|	-	0.00041	19.4	0.1	0.00083	18.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.1	gi|292655084|ref|YP_003534981.1|	-	0.00043	20.2	0.1	0.00083	19.3	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292655084|ref|YP_003534981.1|	-	0.00049	19.9	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Put_DNA-bind_N	PF06971.8	gi|292655084|ref|YP_003534981.1|	-	0.00068	19.3	0.3	0.0013	18.3	0.2	1.5	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
HTH_38	PF13936.1	gi|292655084|ref|YP_003534981.1|	-	0.00083	18.8	0.2	0.0013	18.2	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
FaeA	PF04703.7	gi|292655084|ref|YP_003534981.1|	-	0.00094	19.2	0.0	0.0014	18.7	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
RPA_C	PF08784.6	gi|292655084|ref|YP_003534981.1|	-	0.00096	19.5	0.0	0.0022	18.3	0.0	1.5	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
TrmB	PF01978.14	gi|292655084|ref|YP_003534981.1|	-	0.0013	18.4	0.0	0.002	17.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|292655084|ref|YP_003534981.1|	-	0.0015	18.5	0.0	0.0024	17.9	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
Sigma70_r4	PF04545.11	gi|292655084|ref|YP_003534981.1|	-	0.0016	17.6	0.1	0.0028	16.9	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_DeoR	PF08220.7	gi|292655084|ref|YP_003534981.1|	-	0.0019	17.7	0.1	0.0037	16.7	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.7	gi|292655084|ref|YP_003534981.1|	-	0.002	17.6	0.1	0.0039	16.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Mga	PF08280.6	gi|292655084|ref|YP_003534981.1|	-	0.0023	17.6	0.0	0.0038	16.9	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
LexA_DNA_bind	PF01726.11	gi|292655084|ref|YP_003534981.1|	-	0.0029	17.1	0.0	0.0055	16.2	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
PaaX	PF07848.7	gi|292655084|ref|YP_003534981.1|	-	0.0055	16.6	0.0	0.01	15.7	0.0	1.4	1	0	0	1	1	1	1	PaaX-like	protein
HTH_30	PF13556.1	gi|292655084|ref|YP_003534981.1|	-	0.0067	15.9	0.0	0.014	14.9	0.0	1.5	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292655084|ref|YP_003534981.1|	-	0.0089	16.1	0.0	0.019	15.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
GntR	PF00392.16	gi|292655084|ref|YP_003534981.1|	-	0.013	14.8	0.0	0.026	13.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Penicillinase_R	PF03965.11	gi|292655084|ref|YP_003534981.1|	-	0.015	15.3	0.0	0.031	14.3	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.1	gi|292655084|ref|YP_003534981.1|	-	0.015	15.5	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.1	gi|292655084|ref|YP_003534981.1|	-	0.019	15.0	0.0	0.028	14.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|292655084|ref|YP_003534981.1|	-	0.032	13.9	0.0	0.049	13.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_6	PF01418.12	gi|292655084|ref|YP_003534981.1|	-	0.033	13.9	0.0	0.047	13.4	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
DUF4423	PF14394.1	gi|292655084|ref|YP_003534981.1|	-	0.085	12.4	0.0	4	6.9	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
FeoC	PF09012.5	gi|292655084|ref|YP_003534981.1|	-	0.11	12.2	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_Crp_2	PF13545.1	gi|292655084|ref|YP_003534981.1|	-	0.11	12.2	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_12	PF08461.5	gi|292655084|ref|YP_003534981.1|	-	0.13	12.0	0.1	0.37	10.5	0.0	1.8	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_CodY	PF08222.6	gi|292655084|ref|YP_003534981.1|	-	0.17	11.2	0.5	0.48	9.7	0.1	1.9	2	0	0	2	2	1	0	CodY	helix-turn-helix	domain
DDE_Tnp_1	PF01609.16	gi|292655085|ref|YP_003534982.1|	-	2.7e-27	95.7	0.0	3.6e-27	95.3	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|292655085|ref|YP_003534982.1|	-	0.0046	17.1	0.0	0.013	15.6	0.0	1.8	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292655085|ref|YP_003534982.1|	-	0.0051	15.8	0.1	0.012	14.6	0.1	1.5	2	0	0	2	2	2	1	Archaeal	putative	transposase	ISC1217
DUF2249	PF10006.4	gi|292655085|ref|YP_003534982.1|	-	0.033	13.7	0.1	0.14	11.7	0.1	2.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
NERD	PF08378.6	gi|292655086|ref|YP_003534983.1|	-	0.058	13.6	0.0	0.065	13.5	0.0	1.2	1	0	0	1	1	1	0	Nuclease-related	domain
Met_10	PF02475.11	gi|292655089|ref|YP_003534986.1|	-	6e-58	195.7	0.0	8e-58	195.3	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|292655089|ref|YP_003534986.1|	-	3.3e-11	43.2	4.9	1.2e-10	41.3	0.9	2.5	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655089|ref|YP_003534986.1|	-	5.4e-09	36.6	1.8	9e-09	35.9	0.2	2.1	2	1	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|292655089|ref|YP_003534986.1|	-	1.8e-08	33.9	0.1	3.7e-08	32.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|292655089|ref|YP_003534986.1|	-	5.8e-07	29.2	0.0	9.2e-07	28.5	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PrmA	PF06325.8	gi|292655089|ref|YP_003534986.1|	-	1.4e-06	27.7	0.1	2.3e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|292655089|ref|YP_003534986.1|	-	6e-06	25.9	0.0	9.4e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|292655089|ref|YP_003534986.1|	-	3.3e-05	23.5	0.0	6e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.10	gi|292655089|ref|YP_003534986.1|	-	0.0002	20.8	0.1	0.00064	19.1	0.1	1.6	1	1	1	2	2	2	1	Conserved	hypothetical	protein	95
TRM	PF02005.11	gi|292655089|ref|YP_003534986.1|	-	0.0017	17.3	0.1	0.0031	16.4	0.0	1.4	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
FmrO	PF07091.6	gi|292655089|ref|YP_003534986.1|	-	0.0022	17.0	0.0	0.004	16.1	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_24	PF13578.1	gi|292655089|ref|YP_003534986.1|	-	0.0058	17.4	5.0	0.0063	17.3	0.3	2.7	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltrans_SAM	PF10672.4	gi|292655089|ref|YP_003534986.1|	-	0.0061	15.4	0.0	0.0085	14.9	0.0	1.2	1	0	0	1	1	1	1	S-adenosylmethionine-dependent	methyltransferase
RrnaAD	PF00398.15	gi|292655089|ref|YP_003534986.1|	-	0.011	14.8	0.0	0.017	14.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|292655089|ref|YP_003534986.1|	-	0.042	14.3	0.0	0.12	12.8	0.0	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
MethyltransfD12	PF02086.10	gi|292655089|ref|YP_003534986.1|	-	0.071	12.5	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
tRNA_U5-meth_tr	PF05958.6	gi|292655089|ref|YP_003534986.1|	-	0.18	10.4	0.0	0.21	10.2	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
DNA_methylase	PF00145.12	gi|292655089|ref|YP_003534986.1|	-	0.2	10.7	0.0	0.28	10.2	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Usp	PF00582.21	gi|292655091|ref|YP_003534988.1|	-	1.3e-35	122.5	2.4	1.6e-35	122.3	1.7	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.21	gi|292655092|ref|YP_003534989.1|	-	1.4e-32	112.7	0.1	1.6e-32	112.6	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
SNARE_assoc	PF09335.6	gi|292655093|ref|YP_003534990.1|	-	9.9e-20	70.9	6.6	9.9e-20	70.9	4.6	2.5	3	0	0	3	3	3	1	SNARE	associated	Golgi	protein
Acetyltransf_6	PF13480.1	gi|292655093|ref|YP_003534990.1|	-	0.013	15.4	0.6	0.013	15.4	0.4	1.7	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
HAMP	PF00672.20	gi|292655093|ref|YP_003534990.1|	-	9.9	6.4	16.7	0.68	10.1	0.4	3.9	4	0	0	4	4	4	0	HAMP	domain
E1-E2_ATPase	PF00122.15	gi|292655094|ref|YP_003534991.1|	-	1.7e-66	223.5	4.3	4.3e-66	222.2	3.0	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.16	gi|292655094|ref|YP_003534991.1|	-	1.4e-39	135.5	0.6	1.4e-39	135.5	0.4	1.8	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.21	gi|292655094|ref|YP_003534991.1|	-	2.4e-37	129.4	0.1	2e-36	126.4	0.1	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|292655094|ref|YP_003534991.1|	-	7.7e-17	61.0	0.0	1.7e-16	59.9	0.0	1.5	1	0	0	1	1	1	1	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
HAD	PF12710.2	gi|292655094|ref|YP_003534991.1|	-	9.5e-17	61.7	1.7	2.2e-16	60.6	1.2	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.21	gi|292655094|ref|YP_003534991.1|	-	2.8e-16	58.7	0.0	2.8e-16	58.7	0.0	2.1	2	1	1	3	3	3	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.7	gi|292655094|ref|YP_003534991.1|	-	3.1e-05	23.6	0.4	0.12	11.8	0.2	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Cupin_1	PF00190.17	gi|292655094|ref|YP_003534991.1|	-	0.076	12.4	0.1	0.34	10.3	0.0	2.0	2	0	0	2	2	2	0	Cupin
Molybdopterin	PF00384.17	gi|292655095|ref|YP_003534992.1|	-	2.7e-87	293.2	0.0	3.3e-87	293.0	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|292655095|ref|YP_003534992.1|	-	2e-31	108.0	0.0	5.7e-31	106.5	0.0	1.8	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|292655095|ref|YP_003534992.1|	-	1.9e-10	40.4	0.5	4.4e-10	39.2	0.3	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Pyridox_ox_2	PF12900.2	gi|292655097|ref|YP_003534994.1|	-	2.2e-12	47.0	0.0	2.6e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|292655097|ref|YP_003534994.1|	-	0.00019	21.3	0.0	0.00033	20.6	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.21	gi|292655098|ref|YP_003534995.1|	-	1.1e-07	32.1	2.5	1.5e-07	31.6	1.7	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
NPCBM_assoc	PF10633.4	gi|292655099|ref|YP_003534996.1|	-	0.044	13.8	0.1	0.071	13.1	0.0	1.4	1	0	0	1	1	1	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
HCBP_related	PF06594.6	gi|292655099|ref|YP_003534996.1|	-	0.092	12.3	0.2	0.3	10.7	0.1	1.9	2	0	0	2	2	2	0	Haemolysin-type	calcium	binding	protein	related	domain
E1-E2_ATPase	PF00122.15	gi|292655100|ref|YP_003534997.1|	-	6.1e-42	143.2	0.6	1.3e-41	142.1	0.4	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|292655100|ref|YP_003534997.1|	-	8.9e-36	124.3	9.6	2e-35	123.1	6.7	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292655100|ref|YP_003534997.1|	-	7.2e-12	45.8	0.1	1.6e-11	44.6	0.0	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|292655100|ref|YP_003534997.1|	-	3.2e-10	39.9	0.0	1.6e-09	37.7	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|292655100|ref|YP_003534997.1|	-	0.00041	20.0	0.3	0.00059	19.4	0.2	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.3	gi|292655100|ref|YP_003534997.1|	-	0.0058	17.1	0.7	0.019	15.4	0.6	1.8	2	0	0	2	2	2	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.1	gi|292655101|ref|YP_003534998.1|	-	3.7e-43	147.5	16.2	4.6e-43	147.3	11.2	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD	PF02683.10	gi|292655101|ref|YP_003534998.1|	-	8.1e-06	25.5	2.9	1.3e-05	24.8	2.0	1.4	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
COX2	PF00116.15	gi|292655104|ref|YP_003535001.1|	-	2.9e-23	81.9	0.1	4.1e-23	81.4	0.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.1	gi|292655104|ref|YP_003535001.1|	-	2.4e-05	24.1	0.0	3.6e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
COX2-transmemb	PF09125.5	gi|292655104|ref|YP_003535001.1|	-	0.00065	19.2	1.3	0.0012	18.3	0.9	1.4	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane
COX1	PF00115.15	gi|292655105|ref|YP_003535002.1|	-	1e-69	235.3	53.8	1e-69	235.3	37.3	1.8	1	1	1	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF443	PF04276.7	gi|292655106|ref|YP_003535003.1|	-	0.069	12.5	0.8	0.068	12.5	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF443)
PsbN	PF02468.10	gi|292655107|ref|YP_003535004.1|	-	0.0074	15.8	2.4	0.0074	15.8	1.7	1.5	2	0	0	2	2	2	1	Photosystem	II	reaction	centre	N	protein	(psbN)
DUF4006	PF13179.1	gi|292655107|ref|YP_003535004.1|	-	0.61	9.6	3.6	0.2	11.2	0.2	1.8	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF4006)
FtsX	PF02687.16	gi|292655107|ref|YP_003535004.1|	-	0.95	9.2	5.1	1.2	8.9	3.5	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
DUF4407	PF14362.1	gi|292655107|ref|YP_003535004.1|	-	6.1	5.7	5.7	7.1	5.4	3.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Usp	PF00582.21	gi|292655108|ref|YP_003535005.1|	-	4e-32	111.3	4.1	4.5e-32	111.1	2.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|292655108|ref|YP_003535005.1|	-	0.12	12.8	0.1	0.16	12.4	0.1	1.3	1	1	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Aldolase	PF01081.14	gi|292655110|ref|YP_003535007.1|	-	1.5e-44	151.5	0.8	1.9e-44	151.2	0.6	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
DHO_dh	PF01180.16	gi|292655110|ref|YP_003535007.1|	-	0.0092	14.9	7.2	0.93	8.3	0.4	3.0	2	1	1	3	3	3	3	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.12	gi|292655110|ref|YP_003535007.1|	-	0.053	12.6	0.6	1.3	8.1	0.5	2.9	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase/TENI
MoeA_N	PF03453.12	gi|292655110|ref|YP_003535007.1|	-	0.061	12.6	1.5	0.15	11.3	0.4	1.9	2	0	0	2	2	2	0	MoeA	N-terminal	region	(domain	I	and	II)
DeoC	PF01791.4	gi|292655110|ref|YP_003535007.1|	-	0.29	10.4	2.6	0.29	10.3	0.1	2.0	2	1	0	2	2	2	0	DeoC/LacD	family	aldolase
DUF4131	PF13567.1	gi|292655111|ref|YP_003535008.1|	-	0.018	14.4	0.0	0.034	13.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Pro_CA	PF00484.14	gi|292655112|ref|YP_003535009.1|	-	1.1e-24	87.1	0.1	1.5e-24	86.7	0.1	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
Peptidase_M17	PF00883.16	gi|292655112|ref|YP_003535009.1|	-	0.0081	15.0	0.3	0.011	14.6	0.2	1.2	1	0	0	1	1	1	1	Cytosol	aminopeptidase	family,	catalytic	domain
bPH_2	PF03703.9	gi|292655113|ref|YP_003535010.1|	-	3.7e-47	158.2	5.3	3.1e-19	68.7	0.2	3.4	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.6	gi|292655113|ref|YP_003535010.1|	-	0.00048	19.9	0.1	0.15	11.9	0.0	2.5	2	0	0	2	2	2	2	Bacterial	PH	domain
YwiC	PF14256.1	gi|292655113|ref|YP_003535010.1|	-	0.063	13.3	0.3	0.063	13.3	0.2	2.9	3	0	0	3	3	3	0	YwiC-like	protein
bPH_2	PF03703.9	gi|292655114|ref|YP_003535011.1|	-	1.1e-16	60.5	0.0	1.6e-16	60.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
R_equi_Vir	PF05526.6	gi|292655114|ref|YP_003535011.1|	-	0.038	13.6	0.6	1.6	8.3	0.0	2.2	2	0	0	2	2	2	0	Rhodococcus	equi	virulence-associated	protein
PIRT	PF15099.1	gi|292655114|ref|YP_003535011.1|	-	1.4	8.1	4.7	1.1	8.4	2.4	1.4	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
IncA	PF04156.9	gi|292655114|ref|YP_003535011.1|	-	1.6	8.2	5.2	2.5	7.6	3.6	1.3	1	0	0	1	1	1	0	IncA	protein
DUF1469	PF07332.6	gi|292655114|ref|YP_003535011.1|	-	7.2	6.3	11.2	13	5.5	7.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Protoglobin	PF11563.3	gi|292655115|ref|YP_003535012.1|	-	0.0095	15.6	0.4	1.4	8.5	0.0	2.3	2	0	0	2	2	2	2	Protoglobin
DDRGK	PF09756.4	gi|292655115|ref|YP_003535012.1|	-	0.035	13.5	0.5	0.064	12.6	0.0	1.6	2	0	0	2	2	2	0	DDRGK	domain
Serglycin	PF04360.7	gi|292655115|ref|YP_003535012.1|	-	0.072	12.8	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Serglycin
IncA	PF04156.9	gi|292655115|ref|YP_003535012.1|	-	0.092	12.3	0.1	1.1	8.7	0.0	2.2	2	0	0	2	2	2	0	IncA	protein
Metallophos	PF00149.23	gi|292655116|ref|YP_003535013.1|	-	5.8e-13	48.6	1.4	3e-12	46.3	1.0	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|292655116|ref|YP_003535013.1|	-	1.1e-10	41.5	0.0	1.6e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|292655116|ref|YP_003535013.1|	-	0.18	10.8	0.1	1.3	8.1	0.0	2.0	1	1	1	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
CopD	PF05425.8	gi|292655118|ref|YP_003535015.1|	-	7.6e-06	26.0	7.7	7.6e-06	26.0	5.3	2.1	1	1	1	2	2	2	1	Copper	resistance	protein	D
DUF2269	PF10027.4	gi|292655118|ref|YP_003535015.1|	-	2.3	7.9	8.1	3	7.6	5.6	1.1	1	0	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
DUF2071	PF09844.4	gi|292655119|ref|YP_003535016.1|	-	5.6e-64	215.5	0.0	6.4e-64	215.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.6	gi|292655119|ref|YP_003535016.1|	-	0.0063	15.8	0.1	0.0088	15.4	0.1	1.2	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
DUF3570	PF12094.3	gi|292655119|ref|YP_003535016.1|	-	0.24	10.0	0.6	0.32	9.6	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3570)
Aldo_ket_red	PF00248.16	gi|292655120|ref|YP_003535017.1|	-	4.7e-66	222.5	0.0	5.3e-66	222.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Macro	PF01661.16	gi|292655121|ref|YP_003535018.1|	-	1.9e-13	50.3	0.0	3.1e-13	49.6	0.0	1.3	1	0	0	1	1	1	1	Macro	domain
Dus	PF01207.12	gi|292655121|ref|YP_003535018.1|	-	0.0059	15.4	0.1	0.0074	15.1	0.0	1.2	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
NMO	PF03060.10	gi|292655121|ref|YP_003535018.1|	-	0.023	13.8	0.1	0.035	13.2	0.1	1.4	1	0	0	1	1	1	0	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|292655121|ref|YP_003535018.1|	-	0.034	13.4	0.0	0.051	12.8	0.0	1.2	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
Oxidored_FMN	PF00724.15	gi|292655121|ref|YP_003535018.1|	-	0.036	13.0	0.0	0.045	12.7	0.0	1.1	1	0	0	1	1	1	0	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
HTH_20	PF12840.2	gi|292655122|ref|YP_003535019.1|	-	1.6e-09	37.4	0.2	2.3e-09	36.8	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292655122|ref|YP_003535019.1|	-	1.7e-05	24.3	0.1	3.6e-05	23.2	0.1	1.6	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655122|ref|YP_003535019.1|	-	0.0091	15.6	0.1	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|292655122|ref|YP_003535019.1|	-	0.02	14.5	0.0	0.034	13.8	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.11	gi|292655122|ref|YP_003535019.1|	-	0.054	12.8	0.0	0.098	11.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_7	PF02796.10	gi|292655122|ref|YP_003535019.1|	-	0.058	13.2	0.0	0.56	10.1	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
CHAD	PF05235.9	gi|292655122|ref|YP_003535019.1|	-	0.063	12.8	0.5	0.31	10.5	0.1	1.8	1	1	1	2	2	2	0	CHAD	domain
DUF3353	PF11833.3	gi|292655123|ref|YP_003535020.1|	-	0.016	14.6	3.2	0.018	14.4	2.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
Thioredoxin	PF00085.15	gi|292655124|ref|YP_003535021.1|	-	5.9e-29	99.8	0.0	7.3e-29	99.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|292655124|ref|YP_003535021.1|	-	1.9e-11	44.1	0.2	2.9e-10	40.3	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|292655124|ref|YP_003535021.1|	-	5.6e-08	32.7	0.0	4.3e-05	23.5	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
DSBA	PF01323.15	gi|292655124|ref|YP_003535021.1|	-	5e-07	29.4	0.8	2.1e-06	27.4	0.1	2.0	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_7	PF13899.1	gi|292655124|ref|YP_003535021.1|	-	7e-06	25.9	0.2	1.3e-05	25.0	0.2	1.5	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|292655124|ref|YP_003535021.1|	-	7.6e-06	25.5	0.0	1.1e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|292655124|ref|YP_003535021.1|	-	9e-05	22.2	0.2	0.00015	21.4	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin	domain
HyaE	PF07449.6	gi|292655124|ref|YP_003535021.1|	-	0.00011	21.9	0.0	0.0002	21.2	0.0	1.4	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.9	gi|292655124|ref|YP_003535021.1|	-	0.00063	19.9	0.0	0.001	19.2	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.1	gi|292655124|ref|YP_003535021.1|	-	0.00065	19.2	0.0	0.00096	18.7	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
AhpC-TSA	PF00578.16	gi|292655124|ref|YP_003535021.1|	-	0.0033	17.0	0.1	0.0085	15.7	0.1	1.6	1	1	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_5	PF13743.1	gi|292655124|ref|YP_003535021.1|	-	0.0039	16.7	0.1	0.016	14.8	0.0	1.8	1	1	1	2	2	2	1	Thioredoxin
TrbC_Ftype	PF09673.5	gi|292655124|ref|YP_003535021.1|	-	0.0061	16.1	0.0	0.0098	15.4	0.0	1.3	1	0	0	1	1	1	1	Type-F	conjugative	transfer	system	pilin	assembly	protein
Glutaredoxin	PF00462.19	gi|292655124|ref|YP_003535021.1|	-	0.0065	16.4	0.3	0.016	15.2	0.1	1.7	1	1	0	1	1	1	1	Glutaredoxin
Thioredoxin_4	PF13462.1	gi|292655124|ref|YP_003535021.1|	-	0.014	15.3	0.1	0.24	11.3	0.0	2.0	1	1	1	2	2	2	0	Thioredoxin
Redoxin	PF08534.5	gi|292655124|ref|YP_003535021.1|	-	0.018	14.5	0.2	0.053	13.0	0.2	1.7	1	1	0	1	1	1	0	Redoxin
PYNP_C	PF07831.8	gi|292655125|ref|YP_003535022.1|	-	2.8e-11	42.6	0.0	7.5e-11	41.3	0.0	1.7	1	0	0	1	1	1	1	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Glycos_transf_3	PF00591.16	gi|292655125|ref|YP_003535022.1|	-	2.1e-09	37.1	3.0	4.5e-09	36.0	1.5	2.0	2	1	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|292655125|ref|YP_003535022.1|	-	1.3e-08	34.2	0.3	6.3e-08	32.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2254	PF10011.4	gi|292655125|ref|YP_003535022.1|	-	0.00068	18.2	0.1	0.0012	17.4	0.0	1.3	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2254)
Transcrip_act	PF04949.8	gi|292655125|ref|YP_003535022.1|	-	0.094	12.3	0.0	0.19	11.3	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	activator
IF-2B	PF01008.12	gi|292655126|ref|YP_003535023.1|	-	2.7e-76	256.2	0.5	3e-76	256.0	0.3	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DUF162	PF02589.10	gi|292655126|ref|YP_003535023.1|	-	0.027	13.9	1.8	0.068	12.6	1.2	1.8	1	1	0	1	1	1	0	Uncharacterised	ACR,	YkgG	family	COG1556
6PGD	PF00393.14	gi|292655126|ref|YP_003535023.1|	-	0.12	11.5	0.0	0.29	10.3	0.0	1.6	2	0	0	2	2	2	0	6-phosphogluconate	dehydrogenase,	C-terminal	domain
HTH_10	PF04967.7	gi|292655127|ref|YP_003535024.1|	-	8.6e-15	54.0	0.0	1.5e-14	53.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|292655127|ref|YP_003535024.1|	-	0.00044	19.6	0.6	2.9	7.4	0.2	3.3	3	0	0	3	3	3	2	Sigma-70,	region	4
Complex1_49kDa	PF00346.14	gi|292655128|ref|YP_003535025.1|	-	1.8e-62	210.8	0.0	1.1e-39	136.0	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|292655128|ref|YP_003535025.1|	-	7.4e-30	103.2	0.0	1.5e-29	102.2	0.0	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
MCPsignal	PF00015.16	gi|292655129|ref|YP_003535026.1|	-	5.6e-49	166.5	53.7	1.5e-46	158.6	23.6	3.8	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|292655129|ref|YP_003535026.1|	-	6.8e-16	58.2	19.5	2.4e-15	56.4	0.1	6.2	6	1	1	7	7	7	2	HAMP	domain
Cache_1	PF02743.13	gi|292655129|ref|YP_003535026.1|	-	5.2e-11	41.9	0.2	1e-06	28.1	0.0	2.9	2	0	0	2	2	2	2	Cache	domain
Spc7	PF08317.6	gi|292655129|ref|YP_003535026.1|	-	0.0066	15.1	17.6	0.23	10.1	0.0	3.5	1	1	2	4	4	4	3	Spc7	kinetochore	protein
Mod_r	PF07200.8	gi|292655129|ref|YP_003535026.1|	-	0.02	14.7	14.1	0.25	11.2	0.0	4.3	3	2	1	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Laminin_II	PF06009.7	gi|292655129|ref|YP_003535026.1|	-	0.054	13.2	28.6	0.17	11.6	0.2	4.6	2	2	2	4	4	4	0	Laminin	Domain	II
DUF2365	PF10157.4	gi|292655129|ref|YP_003535026.1|	-	0.072	12.9	12.5	0.077	12.8	1.2	4.2	3	2	2	5	5	5	0	Uncharacterized	conserved	protein	(DUF2365)
DUF948	PF06103.6	gi|292655129|ref|YP_003535026.1|	-	0.12	12.2	34.9	0.26	11.1	1.5	5.7	4	2	2	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.7	gi|292655129|ref|YP_003535026.1|	-	0.18	12.0	20.6	7.3	6.9	0.0	6.2	3	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
COG2	PF06148.6	gi|292655129|ref|YP_003535026.1|	-	0.26	11.1	22.2	0.064	13.1	0.2	5.0	4	1	1	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Prominin	PF05478.6	gi|292655129|ref|YP_003535026.1|	-	0.87	7.0	20.9	1.7	6.0	6.3	2.9	1	1	2	3	3	3	0	Prominin
HalX	PF08663.5	gi|292655129|ref|YP_003535026.1|	-	5.1	7.1	16.1	0.75	9.8	0.4	5.0	4	0	0	4	4	4	0	HalX	domain
Tweety	PF04906.8	gi|292655129|ref|YP_003535026.1|	-	5.3	5.3	10.3	7.8	4.7	1.1	2.7	2	0	0	2	2	2	0	Tweety
RuBisCO_large	PF00016.15	gi|292655130|ref|YP_003535027.1|	-	2.3e-64	217.2	0.6	4.3e-62	209.7	0.4	2.2	1	1	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
RuBisCO_large_N	PF02788.11	gi|292655130|ref|YP_003535027.1|	-	2.8e-21	75.5	0.1	7.7e-21	74.0	0.0	1.8	2	0	0	2	2	2	1	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
DEAD	PF00270.24	gi|292655131|ref|YP_003535028.1|	-	4.5e-23	81.5	0.0	1e-22	80.4	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|292655131|ref|YP_003535028.1|	-	2.9e-07	30.2	0.1	5.9e-07	29.2	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292655131|ref|YP_003535028.1|	-	0.00078	19.3	0.0	0.0014	18.4	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Glyoxalase_4	PF13669.1	gi|292655131|ref|YP_003535028.1|	-	0.057	13.4	0.4	33	4.5	0.0	3.4	2	1	1	3	3	3	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF1628	PF07790.6	gi|292655132|ref|YP_003535029.1|	-	4e-24	85.1	2.7	8.5e-24	84.1	1.9	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
Aminotran_1_2	PF00155.16	gi|292655133|ref|YP_003535030.1|	-	1.4e-66	224.9	0.0	1.6e-66	224.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|292655133|ref|YP_003535030.1|	-	2.9e-08	33.2	0.0	1.1e-07	31.3	0.0	1.7	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|292655133|ref|YP_003535030.1|	-	1.1e-06	27.1	0.0	2e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|292655133|ref|YP_003535030.1|	-	0.0011	17.7	0.0	0.0018	17.0	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|292655133|ref|YP_003535030.1|	-	0.0018	17.4	0.9	0.0042	16.1	0.3	1.8	2	1	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DinB_2	PF12867.2	gi|292655133|ref|YP_003535030.1|	-	0.19	12.0	1.1	0.71	10.2	0.8	2.1	1	1	0	1	1	1	0	DinB	superfamily
DMRL_synthase	PF00885.14	gi|292655134|ref|YP_003535031.1|	-	2.1e-35	121.5	1.3	2.2e-35	121.4	0.9	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
PMT_2	PF13231.1	gi|292655135|ref|YP_003535032.1|	-	3.9e-14	52.8	7.6	3.9e-14	52.8	5.3	2.6	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF668	PF05003.7	gi|292655135|ref|YP_003535032.1|	-	0.069	13.3	0.0	0.18	12.0	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF668)
ATP-grasp	PF02222.17	gi|292655136|ref|YP_003535033.1|	-	4.4e-50	169.4	0.0	5.8e-50	169.0	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|292655136|ref|YP_003535033.1|	-	7.9e-18	64.8	0.2	1.3e-17	64.1	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|292655136|ref|YP_003535033.1|	-	4.1e-05	22.4	0.0	0.0002	20.2	0.0	1.8	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
2-Hacid_dh_C	PF02826.14	gi|292655136|ref|YP_003535033.1|	-	6.3e-05	22.1	0.0	0.00014	21.1	0.0	1.6	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Dala_Dala_lig_C	PF07478.8	gi|292655136|ref|YP_003535033.1|	-	0.0099	15.2	0.0	0.021	14.1	0.0	1.6	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
XdhC_C	PF13478.1	gi|292655136|ref|YP_003535033.1|	-	0.02	15.1	0.0	0.093	13.0	0.0	2.1	1	1	0	1	1	1	0	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|292655136|ref|YP_003535033.1|	-	0.12	12.0	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|292655136|ref|YP_003535033.1|	-	0.13	12.0	0.0	0.33	10.7	0.0	1.7	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AIRC	PF00731.15	gi|292655137|ref|YP_003535034.1|	-	2.2e-50	169.8	0.0	2.6e-50	169.5	0.0	1.1	1	0	0	1	1	1	1	AIR	carboxylase
Oxidored_q4	PF00507.14	gi|292655138|ref|YP_003535035.1|	-	3.7e-28	97.3	0.1	4.6e-28	97.0	0.1	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
Oxidored_q6	PF01058.17	gi|292655139|ref|YP_003535036.1|	-	5.1e-22	77.8	0.2	7.6e-22	77.3	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.14	gi|292655140|ref|YP_003535037.1|	-	7e-65	218.7	0.1	3e-42	144.4	0.1	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|292655140|ref|YP_003535037.1|	-	1.2e-29	102.5	0.1	2.3e-29	101.6	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
NADHdh	PF00146.16	gi|292655141|ref|YP_003535038.1|	-	3.1e-80	269.5	12.1	3.8e-80	269.2	8.4	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.22	gi|292655142|ref|YP_003535039.1|	-	1.9e-12	46.1	9.6	1.2e-06	27.8	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|292655142|ref|YP_003535039.1|	-	2e-11	44.1	10.5	3.1e-11	43.4	7.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292655142|ref|YP_003535039.1|	-	2.5e-10	40.0	9.1	3.5e-10	39.5	6.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292655142|ref|YP_003535039.1|	-	1.9e-09	37.1	10.8	3e-09	36.5	7.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|292655142|ref|YP_003535039.1|	-	4.9e-09	36.8	5.2	2.6e-05	24.8	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|292655142|ref|YP_003535039.1|	-	6.2e-09	35.9	11.5	1.4e-08	34.8	8.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|292655142|ref|YP_003535039.1|	-	4e-08	33.1	9.8	7.7e-08	32.2	6.8	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|292655142|ref|YP_003535039.1|	-	5.5e-08	32.3	13.1	0.0004	20.1	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|292655142|ref|YP_003535039.1|	-	1.3e-07	31.1	9.7	0.00025	20.7	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|292655142|ref|YP_003535039.1|	-	4.8e-07	29.5	8.7	0.0018	18.4	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|292655142|ref|YP_003535039.1|	-	1.7e-05	25.1	11.8	0.0041	17.4	1.1	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|292655142|ref|YP_003535039.1|	-	9.6e-05	22.7	12.1	0.021	15.2	1.3	2.3	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|292655142|ref|YP_003535039.1|	-	0.00034	20.9	14.8	0.0077	16.7	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|292655142|ref|YP_003535039.1|	-	0.003	18.0	8.6	0.21	12.1	0.6	2.6	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|292655142|ref|YP_003535039.1|	-	0.05	13.9	12.2	0.41	11.0	0.9	2.7	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Oxidored_q3	PF00499.15	gi|292655143|ref|YP_003535040.1|	-	8.8e-14	51.5	5.2	1.1e-13	51.1	3.6	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.1	gi|292655143|ref|YP_003535040.1|	-	0.00044	20.1	9.6	0.00063	19.6	6.7	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
YlaC	PF10777.4	gi|292655143|ref|YP_003535040.1|	-	0.045	13.3	2.6	0.058	12.9	1.8	1.2	1	0	0	1	1	1	0	Inner	membrane	protein	YlaC
YjgP_YjgQ	PF03739.9	gi|292655143|ref|YP_003535040.1|	-	0.77	8.4	9.5	0.89	8.2	6.6	1.0	1	0	0	1	1	1	0	Predicted	permease	YjgP/YjgQ	family
DUF1418	PF07214.7	gi|292655143|ref|YP_003535040.1|	-	4.5	6.9	6.8	6.1	6.5	4.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1418)
Oxidored_q2	PF00420.19	gi|292655145|ref|YP_003535042.1|	-	1.3e-21	76.0	6.6	1.4e-21	75.8	4.6	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF4383	PF14325.1	gi|292655145|ref|YP_003535042.1|	-	1.2	9.1	9.7	1.1	9.3	2.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4383)
YiaAB	PF05360.9	gi|292655145|ref|YP_003535042.1|	-	3.3	7.3	8.6	0.36	10.3	0.8	2.3	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
Oxidored_q1	PF00361.15	gi|292655146|ref|YP_003535043.1|	-	9.1e-73	244.8	12.4	9.1e-73	244.8	8.6	1.9	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|292655146|ref|YP_003535043.1|	-	3.4e-12	45.7	0.0	1.2e-11	44.0	0.0	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1_C	PF01010.14	gi|292655146|ref|YP_003535043.1|	-	0.062	12.8	0.0	0.18	11.2	0.0	1.8	1	1	0	1	1	1	0	NADH-Ubiquinone	oxidoreductase	(complex	I)	subunit	C-terminus
Oxidored_q1	PF00361.15	gi|292655147|ref|YP_003535044.1|	-	1.3e-64	218.1	21.2	1.3e-64	218.1	14.7	2.1	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q5_N	PF01059.12	gi|292655147|ref|YP_003535044.1|	-	0.00072	19.4	1.1	0.00072	19.4	0.7	3.6	3	1	1	4	4	4	1	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Oxidored_q1	PF00361.15	gi|292655148|ref|YP_003535045.1|	-	7.3e-59	199.2	11.8	7.3e-59	199.2	8.2	1.6	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|292655148|ref|YP_003535045.1|	-	0.0052	16.3	1.8	0.017	14.6	1.3	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
YqzM	PF14141.1	gi|292655148|ref|YP_003535045.1|	-	1	9.1	6.6	0.91	9.3	0.3	2.9	2	0	0	2	2	2	0	YqzM-like	protein
PepSY_TM_1	PF13172.1	gi|292655148|ref|YP_003535045.1|	-	3.2	7.6	19.0	2.2	8.1	0.7	4.7	3	0	0	3	3	3	0	PepSY-associated	TM	helix
DHHA1	PF02272.14	gi|292655150|ref|YP_003535047.1|	-	2.5e-13	49.5	2.5	2.8e-13	49.3	0.6	2.0	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.15	gi|292655150|ref|YP_003535047.1|	-	5.4e-13	48.8	0.0	1.1e-12	47.8	0.0	1.5	1	0	0	1	1	1	1	DHH	family
TrkA_N	PF02254.13	gi|292655150|ref|YP_003535047.1|	-	3e-07	30.4	0.0	1.2e-06	28.5	0.0	2.1	2	0	0	2	2	2	1	TrkA-N	domain
ApbA	PF02558.11	gi|292655150|ref|YP_003535047.1|	-	7.9e-05	22.1	0.2	0.00023	20.6	0.1	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
DUF1541	PF07563.6	gi|292655150|ref|YP_003535047.1|	-	0.04	13.5	0.2	0.083	12.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1541)
F420_oxidored	PF03807.12	gi|292655150|ref|YP_003535047.1|	-	0.071	13.5	0.1	0.3	11.5	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AARP2CN	PF08142.7	gi|292655150|ref|YP_003535047.1|	-	0.076	12.5	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	AARP2CN	(NUC121)	domain
CBS	PF00571.23	gi|292655151|ref|YP_003535048.1|	-	4.8e-25	87.0	10.2	8.2e-13	47.9	0.6	3.2	4	0	0	4	4	4	2	CBS	domain
ParBc	PF02195.13	gi|292655151|ref|YP_003535048.1|	-	3.8e-09	36.5	0.3	1.7e-08	34.4	0.2	2.0	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.6	gi|292655151|ref|YP_003535048.1|	-	0.0011	18.7	0.1	0.012	15.4	0.1	2.2	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
DUF1015	PF06245.6	gi|292655151|ref|YP_003535048.1|	-	0.043	12.3	0.1	0.08	11.4	0.0	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1015)
Dehyd-heme_bind	PF09098.5	gi|292655151|ref|YP_003535048.1|	-	0.089	12.2	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Quinohemoprotein	amine	dehydrogenase	A,	alpha	subunit,	haem	binding
NHL	PF01436.16	gi|292655151|ref|YP_003535048.1|	-	0.33	11.0	2.7	0.65	10.0	0.3	2.6	3	0	0	3	3	3	0	NHL	repeat
A2L_zn_ribbon	PF08792.5	gi|292655153|ref|YP_003535050.1|	-	0.013	14.9	0.8	2.7	7.5	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|292655153|ref|YP_003535050.1|	-	0.018	14.5	1.1	0.039	13.4	0.8	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292655153|ref|YP_003535050.1|	-	0.019	14.4	0.7	0.019	14.4	0.5	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292655153|ref|YP_003535050.1|	-	0.025	14.3	0.6	5.6	6.8	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DZR	PF12773.2	gi|292655153|ref|YP_003535050.1|	-	0.035	13.9	1.4	0.082	12.7	1.0	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.1	gi|292655153|ref|YP_003535050.1|	-	0.062	13.6	2.3	2	8.8	1.6	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
PhnA_Zn_Ribbon	PF08274.7	gi|292655153|ref|YP_003535050.1|	-	0.07	12.9	0.6	11	5.9	0.0	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
UPF0547	PF10571.4	gi|292655153|ref|YP_003535050.1|	-	0.093	12.4	1.3	1.9	8.2	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Sgf11	PF08209.6	gi|292655153|ref|YP_003535050.1|	-	0.12	11.6	1.1	2.7	7.4	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
TF_Zn_Ribbon	PF08271.7	gi|292655153|ref|YP_003535050.1|	-	0.13	11.6	6.4	3.9	6.8	4.4	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF3797	PF12677.2	gi|292655153|ref|YP_003535050.1|	-	0.14	11.7	0.3	11	5.7	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-ribbon_3	PF13248.1	gi|292655153|ref|YP_003535050.1|	-	0.22	10.7	6.0	0.77	9.0	4.2	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
Metallothio_5	PF02067.10	gi|292655153|ref|YP_003535050.1|	-	0.28	11.2	0.4	0.28	11.2	0.2	1.7	2	0	0	2	2	2	0	Metallothionein	family	5
Zn-ribbon_8	PF09723.5	gi|292655153|ref|YP_003535050.1|	-	0.64	10.0	5.1	5.5	7.0	3.5	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-dskA_traR	PF01258.12	gi|292655153|ref|YP_003535050.1|	-	1.3	8.8	5.4	9.2	6.1	0.2	2.4	2	1	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF1610	PF07754.6	gi|292655153|ref|YP_003535050.1|	-	2.8	8.1	6.4	5.5	7.1	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
MFS_1	PF07690.11	gi|292655154|ref|YP_003535051.1|	-	2.9e-54	184.1	60.0	6e-48	163.3	27.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|292655154|ref|YP_003535051.1|	-	1.3e-09	36.9	15.4	7.2e-05	21.3	0.8	2.1	1	1	1	2	2	2	2	MFS/sugar	transport	protein
Sugar_tr	PF00083.19	gi|292655154|ref|YP_003535051.1|	-	8.8e-07	27.8	14.2	6.1e-06	25.0	9.8	2.0	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|292655154|ref|YP_003535051.1|	-	0.00081	17.6	0.9	0.00081	17.6	0.6	2.7	1	1	1	2	2	2	1	Transmembrane	secretion	effector
TRI12	PF06609.8	gi|292655154|ref|YP_003535051.1|	-	0.053	11.7	7.5	0.053	11.7	1.9	2.1	2	0	0	2	2	2	0	Fungal	trichothecene	efflux	pump	(TRI12)
DUF21	PF01595.15	gi|292655156|ref|YP_003535053.1|	-	8.7e-30	103.3	0.2	1.2e-29	102.8	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|292655156|ref|YP_003535053.1|	-	2.8e-11	43.0	0.8	2.7e-06	27.0	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M24	PF00557.19	gi|292655157|ref|YP_003535054.1|	-	4.1e-59	199.6	1.2	5e-59	199.3	0.8	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|292655157|ref|YP_003535054.1|	-	1.2e-30	106.6	0.0	2.9e-30	105.4	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
AAA_26	PF13500.1	gi|292655159|ref|YP_003535056.1|	-	1.7e-31	109.4	0.0	2.5e-31	108.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DRTGG	PF07085.7	gi|292655159|ref|YP_003535056.1|	-	3.1e-24	84.5	0.1	1.5e-23	82.3	0.0	2.1	2	1	1	3	3	3	1	DRTGG	domain
CbiA	PF01656.18	gi|292655159|ref|YP_003535056.1|	-	6.5e-09	35.4	0.1	1.1e-08	34.7	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
HAD	PF12710.2	gi|292655159|ref|YP_003535056.1|	-	0.012	15.7	0.0	0.02	15.0	0.0	1.4	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
LpxK	PF02606.9	gi|292655159|ref|YP_003535056.1|	-	0.096	11.6	0.4	1.4	7.7	0.0	2.2	2	0	0	2	2	2	0	Tetraacyldisaccharide-1-P	4'-kinase
IstB_IS21	PF01695.12	gi|292655159|ref|YP_003535056.1|	-	0.15	11.4	0.1	0.25	10.7	0.1	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ATP-grasp_5	PF13549.1	gi|292655160|ref|YP_003535057.1|	-	3.1e-73	245.6	0.4	5.1e-73	244.9	0.3	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.1	gi|292655160|ref|YP_003535057.1|	-	1.1e-50	170.8	0.2	1.1e-50	170.8	0.2	2.2	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|292655160|ref|YP_003535057.1|	-	5.1e-24	84.6	0.2	4e-23	81.7	0.0	2.5	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|292655160|ref|YP_003535057.1|	-	3.8e-11	43.3	0.5	1.3e-10	41.6	0.3	2.0	1	0	0	1	1	1	1	CoA	binding	domain
ATP-grasp_2	PF08442.5	gi|292655160|ref|YP_003535057.1|	-	0.0003	20.2	0.0	0.00059	19.2	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
VirB3	PF05101.8	gi|292655161|ref|YP_003535058.1|	-	0.0066	16.4	1.4	0.0081	16.1	1.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	pathway,	VirB3-like	protein
DUF3488	PF11992.3	gi|292655161|ref|YP_003535058.1|	-	0.1	11.2	3.2	0.12	11.0	2.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3488)
Wzy_C	PF04932.10	gi|292655161|ref|YP_003535058.1|	-	0.11	12.3	0.9	0.12	12.1	0.6	1.0	1	0	0	1	1	1	0	O-Antigen	ligase
Got1	PF04178.7	gi|292655161|ref|YP_003535058.1|	-	0.15	12.1	3.4	0.17	12.0	2.4	1.1	1	0	0	1	1	1	0	Got1/Sft2-like	family
FAM163	PF15069.1	gi|292655161|ref|YP_003535058.1|	-	0.17	12.4	0.2	0.21	12.1	0.1	1.2	1	0	0	1	1	1	0	FAM163	family
HAMP	PF00672.20	gi|292655161|ref|YP_003535058.1|	-	0.53	10.5	9.8	0.11	12.7	0.9	2.1	1	1	1	2	2	2	0	HAMP	domain
SdpI	PF13630.1	gi|292655161|ref|YP_003535058.1|	-	0.63	9.7	5.2	0.76	9.5	3.6	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
O-antigen_lig	PF13425.1	gi|292655161|ref|YP_003535058.1|	-	1.1	9.2	6.7	1.2	9.0	4.6	1.1	1	0	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
DUF454	PF04304.8	gi|292655161|ref|YP_003535058.1|	-	2	8.4	9.6	2.6	8.1	6.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF454)
TM_helix	PF05552.7	gi|292655162|ref|YP_003535059.1|	-	9.9e-17	60.3	5.5	2.3e-13	49.5	0.9	3.4	3	1	0	3	3	3	2	Conserved	TM	helix
HAMP	PF00672.20	gi|292655162|ref|YP_003535059.1|	-	0.053	13.7	9.1	12	6.2	0.0	3.7	3	0	0	3	3	3	0	HAMP	domain
Zip	PF02535.17	gi|292655163|ref|YP_003535060.1|	-	7.7e-21	74.4	19.6	4.3e-20	71.9	2.7	2.7	1	1	1	2	2	2	2	ZIP	Zinc	transporter
CDKN3	PF05706.7	gi|292655164|ref|YP_003535061.1|	-	0.05	13.0	0.0	0.06	12.7	0.0	1.1	1	0	0	1	1	1	0	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
Pro_racemase	PF05544.6	gi|292655164|ref|YP_003535061.1|	-	0.11	11.2	0.2	0.13	11.0	0.1	1.1	1	0	0	1	1	1	0	Proline	racemase
ABC2_membrane	PF01061.19	gi|292655165|ref|YP_003535062.1|	-	6.3e-23	81.0	10.9	6.3e-23	81.0	7.6	1.3	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|292655165|ref|YP_003535062.1|	-	1.8e-14	53.5	8.5	1.8e-14	53.5	5.9	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|292655165|ref|YP_003535062.1|	-	2e-08	33.6	11.8	2.5e-08	33.3	8.1	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|292655165|ref|YP_003535062.1|	-	3.4e-07	29.3	21.0	2.4e-06	26.6	14.5	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
OppC_N	PF12911.2	gi|292655165|ref|YP_003535062.1|	-	0.12	11.7	0.2	0.12	11.7	0.1	3.1	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC2_membrane_5	PF13346.1	gi|292655165|ref|YP_003535062.1|	-	0.13	11.5	6.9	0.043	13.0	2.0	2.1	2	1	0	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|292655166|ref|YP_003535063.1|	-	3.5e-30	105.0	0.0	5.4e-30	104.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655166|ref|YP_003535063.1|	-	2e-17	64.1	0.0	5.9e-11	42.8	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292655166|ref|YP_003535063.1|	-	0.0017	17.8	0.4	0.0036	16.7	0.3	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|292655166|ref|YP_003535063.1|	-	0.0018	18.6	0.1	0.0025	18.1	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
cobW	PF02492.14	gi|292655166|ref|YP_003535063.1|	-	0.0039	16.6	0.0	0.0065	15.9	0.0	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
UPF0079	PF02367.12	gi|292655166|ref|YP_003535063.1|	-	0.0044	16.6	0.3	0.0089	15.6	0.2	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
IstB_IS21	PF01695.12	gi|292655166|ref|YP_003535063.1|	-	0.006	16.0	0.0	0.21	10.9	0.1	2.3	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.1	gi|292655166|ref|YP_003535063.1|	-	0.0099	15.8	0.0	0.016	15.1	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|292655166|ref|YP_003535063.1|	-	0.013	15.4	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_17	PF13207.1	gi|292655166|ref|YP_003535063.1|	-	0.016	15.9	0.1	0.03	15.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|292655166|ref|YP_003535063.1|	-	0.017	15.3	0.0	0.061	13.5	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.14	gi|292655166|ref|YP_003535063.1|	-	0.017	14.3	0.1	0.43	9.7	0.1	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ArgK	PF03308.11	gi|292655166|ref|YP_003535063.1|	-	0.03	13.0	0.5	0.054	12.2	0.3	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_28	PF13521.1	gi|292655166|ref|YP_003535063.1|	-	0.039	13.9	0.1	0.079	12.9	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|292655166|ref|YP_003535063.1|	-	0.044	12.9	0.0	0.073	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|292655166|ref|YP_003535063.1|	-	0.046	13.1	0.0	0.11	11.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|292655166|ref|YP_003535063.1|	-	0.051	13.4	0.0	0.11	12.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|292655166|ref|YP_003535063.1|	-	0.11	12.1	0.7	0.28	10.7	0.3	1.9	2	1	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|292655166|ref|YP_003535063.1|	-	0.12	11.4	0.2	0.24	10.5	0.1	1.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
SbcCD_C	PF13558.1	gi|292655166|ref|YP_003535063.1|	-	0.13	12.2	0.0	0.76	9.7	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
PduV-EutP	PF10662.4	gi|292655166|ref|YP_003535063.1|	-	0.15	11.5	0.0	0.26	10.7	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Miro	PF08477.8	gi|292655166|ref|YP_003535063.1|	-	0.17	12.3	0.0	0.3	11.5	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
AAA_15	PF13175.1	gi|292655166|ref|YP_003535063.1|	-	0.19	10.7	0.0	8.5	5.2	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
GSDH	PF07995.6	gi|292655167|ref|YP_003535064.1|	-	9.1e-35	120.2	0.0	1.7e-34	119.4	0.0	1.3	1	1	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Reg_prop	PF07494.6	gi|292655167|ref|YP_003535064.1|	-	2.1e-05	23.9	0.2	0.36	10.9	0.0	3.9	3	0	0	3	3	3	2	Two	component	regulator	propeller
TAT_signal	PF10518.4	gi|292655167|ref|YP_003535064.1|	-	0.017	15.0	3.8	0.091	12.8	2.6	2.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292655167|ref|YP_003535064.1|	-	0.052	12.7	0.8	0.19	10.9	0.2	2.3	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PQQ_3	PF13570.1	gi|292655167|ref|YP_003535064.1|	-	0.24	11.7	6.2	5.4	7.4	0.1	4.1	3	0	0	3	3	3	0	PQQ-like	domain
GFO_IDH_MocA	PF01408.17	gi|292655168|ref|YP_003535065.1|	-	3.2e-23	82.5	0.0	7.2e-23	81.3	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|292655168|ref|YP_003535065.1|	-	1.9e-08	34.0	0.2	4.1e-08	33.0	0.1	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Aldo_ket_red	PF00248.16	gi|292655169|ref|YP_003535066.1|	-	7.3e-71	238.2	0.0	9e-71	237.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
SIC	PF03482.8	gi|292655169|ref|YP_003535066.1|	-	0.00054	19.6	0.8	0.00082	19.0	0.5	1.3	1	0	0	1	1	1	1	sic	protein
MF_alpha_N	PF05436.6	gi|292655169|ref|YP_003535066.1|	-	0.013	15.1	0.1	0.023	14.3	0.0	1.4	1	0	0	1	1	1	0	Mating	factor	alpha	precursor	N-terminus
DUF457	PF04307.9	gi|292655170|ref|YP_003535067.1|	-	1.1e-07	31.2	4.9	1.3e-07	31.1	3.4	1.0	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF4407	PF14362.1	gi|292655170|ref|YP_003535067.1|	-	0.015	14.3	0.8	0.015	14.3	0.6	1.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Gly-zipper_OmpA	PF13436.1	gi|292655170|ref|YP_003535067.1|	-	0.9	9.2	4.5	1.1	8.9	1.4	2.0	2	0	0	2	2	2	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Rdx	PF10262.4	gi|292655171|ref|YP_003535068.1|	-	9.9e-17	60.7	0.0	1.1e-16	60.6	0.0	1.0	1	0	0	1	1	1	1	Rdx	family
UbiA	PF01040.13	gi|292655173|ref|YP_003535070.1|	-	2.5e-28	98.9	26.4	2.5e-28	98.9	18.3	2.8	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.10	gi|292655173|ref|YP_003535070.1|	-	4.5e-20	71.7	16.4	4.5e-20	71.7	11.4	3.8	2	1	1	3	3	3	2	Cytochrome	oxidase	assembly	protein
COX2	PF00116.15	gi|292655174|ref|YP_003535071.1|	-	1e-23	83.4	3.0	1.7e-22	79.4	2.1	2.2	1	1	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.10	gi|292655174|ref|YP_003535071.1|	-	7.2e-10	38.6	0.7	1.2e-09	37.9	0.5	1.4	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.1	gi|292655174|ref|YP_003535071.1|	-	0.00067	19.5	0.0	0.0014	18.5	0.0	1.6	1	0	0	1	1	1	1	Cupredoxin-like	domain
PTPLA	PF04387.9	gi|292655174|ref|YP_003535071.1|	-	0.052	12.9	0.2	0.083	12.3	0.1	1.3	1	0	0	1	1	1	0	Protein	tyrosine	phosphatase-like	protein,	PTPLA
ETRAMP	PF09716.5	gi|292655174|ref|YP_003535071.1|	-	0.4	10.6	2.4	2.9	7.8	0.0	2.4	1	1	0	2	2	2	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
NVEALA	PF14055.1	gi|292655174|ref|YP_003535071.1|	-	0.55	9.9	3.9	0.86	9.3	0.0	3.0	3	0	0	3	3	3	0	NVEALA	protein
TrbC	PF04956.8	gi|292655174|ref|YP_003535071.1|	-	0.6	10.1	8.8	3.2	7.8	6.2	1.9	1	1	0	1	1	1	0	TrbC/VIRB2	family
CTP_transf_2	PF01467.21	gi|292655175|ref|YP_003535072.1|	-	5e-12	46.1	0.3	4.3e-11	43.1	0.2	2.0	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|292655175|ref|YP_003535072.1|	-	0.19	11.3	2.4	0.52	9.9	0.2	2.2	1	1	1	3	3	3	0	FAD	synthetase
Prok-JAB	PF14464.1	gi|292655176|ref|YP_003535073.1|	-	8.3e-14	51.0	0.0	1.2e-13	50.5	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|292655176|ref|YP_003535073.1|	-	5.4e-05	22.9	0.0	0.00041	20.0	0.0	1.9	1	1	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
RadC	PF04002.10	gi|292655176|ref|YP_003535073.1|	-	0.022	14.4	0.0	0.037	13.7	0.0	1.4	1	0	0	1	1	1	0	RadC-like	JAB	domain
Toxin-JAB1	PF15659.1	gi|292655176|ref|YP_003535073.1|	-	0.13	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	JAB-like	toxin	1
Fructosamin_kin	PF03881.9	gi|292655177|ref|YP_003535074.1|	-	2e-46	158.2	0.0	2.5e-46	157.9	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.18	gi|292655177|ref|YP_003535074.1|	-	5.4e-19	68.8	10.1	7.1e-19	68.4	7.0	1.1	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
RIO1	PF01163.17	gi|292655177|ref|YP_003535074.1|	-	0.07	12.4	0.0	0.32	10.3	0.0	1.8	2	0	0	2	2	2	0	RIO1	family
DHH	PF01368.15	gi|292655178|ref|YP_003535075.1|	-	1.2e-10	41.1	0.0	2.3e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	DHH	family
tRNA_anti-codon	PF01336.20	gi|292655178|ref|YP_003535075.1|	-	2.8e-07	30.2	0.2	5.6e-07	29.3	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.18	gi|292655178|ref|YP_003535075.1|	-	4.5e-05	23.4	0.5	4.5e-05	23.4	0.3	2.3	2	0	0	2	2	2	1	S1	RNA	binding	domain
PLDc_2	PF13091.1	gi|292655179|ref|YP_003535076.1|	-	1.5e-32	112.0	0.0	2.3e-18	66.1	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.17	gi|292655179|ref|YP_003535076.1|	-	1.8e-06	27.5	0.7	0.00016	21.3	0.1	2.6	2	0	0	2	2	2	1	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.3	gi|292655179|ref|YP_003535076.1|	-	0.00051	19.0	0.1	0.24	10.3	0.0	2.5	2	0	0	2	2	2	2	Archaeal	transcriptional	regulator	TrmB
PP_kinase_C	PF13090.1	gi|292655179|ref|YP_003535076.1|	-	0.011	14.3	0.1	0.71	8.4	0.0	2.1	2	0	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain
HEAT_2	PF13646.1	gi|292655180|ref|YP_003535077.1|	-	1.2e-22	79.9	3.9	2.4e-12	46.9	3.0	3.9	1	1	2	3	3	3	2	HEAT	repeats
HEAT_PBS	PF03130.11	gi|292655180|ref|YP_003535077.1|	-	7.9e-15	53.7	6.3	0.00011	22.3	0.2	6.8	7	0	0	7	7	7	3	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.1	gi|292655180|ref|YP_003535077.1|	-	8.7e-08	32.4	3.7	0.0063	16.9	0.4	3.9	2	1	1	3	3	3	2	HEAT-like	repeat
HEAT	PF02985.17	gi|292655180|ref|YP_003535077.1|	-	2.5e-06	27.0	0.6	0.26	11.4	0.2	3.8	3	0	0	3	3	3	2	HEAT	repeat
Arm	PF00514.18	gi|292655180|ref|YP_003535077.1|	-	0.012	15.4	0.0	11	6.0	0.0	3.4	2	1	1	3	3	3	0	Armadillo/beta-catenin-like	repeat
CN_hydrolase	PF00795.17	gi|292655181|ref|YP_003535078.1|	-	1.6e-17	63.4	0.0	2.1e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Oxidored_FMN	PF00724.15	gi|292655182|ref|YP_003535079.1|	-	4e-72	243.0	0.0	4.5e-72	242.8	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.16	gi|292655182|ref|YP_003535079.1|	-	0.056	12.7	0.0	0.095	11.9	0.0	1.3	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
DUF848	PF05852.6	gi|292655183|ref|YP_003535080.1|	-	0.67	9.7	6.3	0.59	9.9	0.5	2.4	3	0	0	3	3	3	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DUF35	PF01796.12	gi|292655184|ref|YP_003535081.1|	-	6.3e-09	35.9	1.8	9.7e-09	35.3	1.2	1.4	1	1	0	1	1	1	1	DUF35	OB-fold	domain
Thiolase_C	PF02803.13	gi|292655185|ref|YP_003535082.1|	-	4.6e-08	32.5	0.0	9.5e-08	31.5	0.0	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|292655185|ref|YP_003535082.1|	-	1.4e-05	24.2	0.1	3.2e-05	23.0	0.1	1.7	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|292655185|ref|YP_003535082.1|	-	0.00012	21.9	0.3	1.2	9.0	0.0	3.3	3	0	0	3	3	3	3	Beta-ketoacyl	synthase,	C-terminal	domain
NfeD	PF01957.13	gi|292655186|ref|YP_003535083.1|	-	0.82	9.7	10.5	0.061	13.4	1.5	2.1	1	1	1	2	2	2	0	NfeD-like	C-terminal,	partner-binding
Ferric_reduct	PF01794.14	gi|292655186|ref|YP_003535083.1|	-	5.9	6.9	10.2	1.2	9.1	1.8	2.6	1	1	1	2	2	2	0	Ferric	reductase	like	transmembrane	component
MttA_Hcf106	PF02416.11	gi|292655187|ref|YP_003535084.1|	-	5e-15	54.3	0.0	5.6e-15	54.2	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
adh_short	PF00106.20	gi|292655188|ref|YP_003535085.1|	-	3.8e-36	124.5	1.0	4.9e-36	124.1	0.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292655188|ref|YP_003535085.1|	-	1.1e-31	110.5	0.0	1.3e-31	110.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|292655188|ref|YP_003535085.1|	-	5.1e-13	49.0	0.2	7.3e-13	48.5	0.2	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|292655188|ref|YP_003535085.1|	-	9.1e-06	25.8	0.9	1.7e-05	24.9	0.6	1.5	1	1	0	1	1	1	1	NADH(P)-binding
3Beta_HSD	PF01073.14	gi|292655188|ref|YP_003535085.1|	-	2.2e-05	23.3	0.1	2.9e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.16	gi|292655188|ref|YP_003535085.1|	-	0.00018	21.0	0.1	0.00024	20.6	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.13	gi|292655188|ref|YP_003535085.1|	-	0.00063	19.4	0.7	0.0015	18.2	0.5	1.6	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|292655188|ref|YP_003535085.1|	-	0.021	14.6	1.1	0.092	12.5	0.3	2.2	2	0	0	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
RmlD_sub_bind	PF04321.12	gi|292655188|ref|YP_003535085.1|	-	0.11	11.3	0.2	0.15	10.8	0.2	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DUF4382	PF14321.1	gi|292655189|ref|YP_003535086.1|	-	2.1e-19	69.9	14.3	9.9e-16	58.0	0.3	3.0	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4382)
DUF4480	PF13715.1	gi|292655189|ref|YP_003535086.1|	-	0.026	14.5	0.2	0.026	14.5	0.1	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4480)
FixH	PF05751.6	gi|292655189|ref|YP_003535086.1|	-	0.76	9.5	4.2	4	7.2	0.1	3.1	2	1	1	3	3	3	0	FixH
SPX	PF03105.14	gi|292655189|ref|YP_003535086.1|	-	1.2	8.8	4.4	0.64	9.7	1.3	1.7	2	0	0	2	2	2	0	SPX	domain
Pyr_redox_2	PF07992.9	gi|292655190|ref|YP_003535087.1|	-	3.7e-21	75.9	0.0	5e-21	75.5	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655190|ref|YP_003535087.1|	-	6.7e-07	29.5	0.0	0.0038	17.3	0.0	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292655190|ref|YP_003535087.1|	-	3.6e-06	26.1	3.1	1.9e-05	23.7	0.9	2.2	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|292655190|ref|YP_003535087.1|	-	6.7e-06	26.4	0.1	0.0024	18.2	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292655190|ref|YP_003535087.1|	-	2e-05	23.6	2.2	0.00063	18.6	0.4	2.4	2	1	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|292655190|ref|YP_003535087.1|	-	9.2e-05	21.4	0.2	0.0002	20.3	0.1	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|292655190|ref|YP_003535087.1|	-	0.00031	19.9	0.5	0.00045	19.4	0.3	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292655190|ref|YP_003535087.1|	-	0.00035	19.1	0.1	0.0027	16.2	0.2	1.9	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|292655190|ref|YP_003535087.1|	-	0.00067	18.8	0.5	0.001	18.1	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292655190|ref|YP_003535087.1|	-	0.0043	17.0	2.3	0.0092	15.9	0.6	2.3	2	1	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|292655190|ref|YP_003535087.1|	-	0.0093	15.0	0.0	0.018	14.1	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
K_oxygenase	PF13434.1	gi|292655190|ref|YP_003535087.1|	-	0.016	14.1	0.0	0.077	11.8	0.0	1.8	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.1	gi|292655190|ref|YP_003535087.1|	-	0.02	14.6	0.3	1.4	8.6	0.0	2.7	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Methyltransf_11	PF08241.7	gi|292655191|ref|YP_003535088.1|	-	1.2e-20	73.7	0.2	1.8e-20	73.1	0.2	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655191|ref|YP_003535088.1|	-	1.7e-14	53.9	0.3	3.7e-14	52.9	0.1	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655191|ref|YP_003535088.1|	-	3.8e-12	46.0	0.0	4.9e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655191|ref|YP_003535088.1|	-	1.9e-10	41.2	0.6	3.1e-10	40.6	0.4	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292655191|ref|YP_003535088.1|	-	3.4e-10	39.4	0.0	4.4e-10	39.0	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|292655191|ref|YP_003535088.1|	-	3.6e-10	40.1	0.3	7.9e-10	39.0	0.2	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655191|ref|YP_003535088.1|	-	1.2e-07	31.5	0.0	1.5e-07	31.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|292655191|ref|YP_003535088.1|	-	1e-06	28.2	0.0	1.4e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|292655191|ref|YP_003535088.1|	-	5.4e-06	26.4	3.1	1e-05	25.5	2.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|292655191|ref|YP_003535088.1|	-	1.7e-05	23.4	0.0	2e-05	23.1	0.0	1.0	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
NodS	PF05401.6	gi|292655191|ref|YP_003535088.1|	-	0.00022	20.6	0.0	0.00029	20.2	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
TehB	PF03848.9	gi|292655191|ref|YP_003535088.1|	-	0.00033	19.8	0.0	0.00039	19.6	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_9	PF08003.6	gi|292655191|ref|YP_003535088.1|	-	0.00068	18.4	0.0	0.00085	18.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TPMT	PF05724.6	gi|292655191|ref|YP_003535088.1|	-	0.0042	16.5	0.0	0.0076	15.7	0.0	1.3	1	1	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_32	PF13679.1	gi|292655191|ref|YP_003535088.1|	-	0.0067	16.1	0.0	0.01	15.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|292655191|ref|YP_003535088.1|	-	0.012	14.6	0.0	0.02	13.9	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
MTS	PF05175.9	gi|292655191|ref|YP_003535088.1|	-	0.013	14.8	0.1	0.027	13.8	0.1	1.5	1	1	1	2	2	2	0	Methyltransferase	small	domain
Methyltransf_17	PF12692.2	gi|292655191|ref|YP_003535088.1|	-	0.019	14.6	0.0	0.027	14.1	0.0	1.2	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
T2SF	PF00482.18	gi|292655192|ref|YP_003535089.1|	-	7.9e-32	109.7	15.4	2.3e-20	72.7	0.9	2.9	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|292655193|ref|YP_003535090.1|	-	8.7e-46	156.0	0.0	1.1e-45	155.6	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|292655193|ref|YP_003535090.1|	-	0.024	14.1	0.0	0.048	13.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SAP	PF02037.22	gi|292655193|ref|YP_003535090.1|	-	0.11	12.0	0.2	11	5.7	0.0	2.5	2	0	0	2	2	2	0	SAP	domain
DUF606	PF04657.8	gi|292655194|ref|YP_003535091.1|	-	0.025	14.6	5.7	0.066	13.2	3.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF606
Cytochrom_B558a	PF05038.8	gi|292655194|ref|YP_003535091.1|	-	0.17	11.5	4.6	0.38	10.3	3.2	1.5	1	1	0	1	1	1	0	Cytochrome	Cytochrome	b558	alpha-subunit
Cupin_2	PF07883.6	gi|292655195|ref|YP_003535092.1|	-	7.9e-12	44.5	0.0	1.3e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_6	PF12852.2	gi|292655195|ref|YP_003535092.1|	-	0.00037	20.1	0.0	0.00042	19.9	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_1	PF00190.17	gi|292655195|ref|YP_003535092.1|	-	0.00039	19.8	0.0	0.00045	19.6	0.0	1.2	1	0	0	1	1	1	1	Cupin
Cupin_4	PF08007.7	gi|292655195|ref|YP_003535092.1|	-	0.00046	19.5	0.1	0.00052	19.3	0.0	1.1	1	0	0	1	1	1	1	Cupin	superfamily	protein
AraC_binding	PF02311.14	gi|292655195|ref|YP_003535092.1|	-	0.001	18.7	0.0	0.0014	18.3	0.0	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
HgmA	PF04209.8	gi|292655195|ref|YP_003535092.1|	-	0.0024	16.3	0.0	0.0028	16.1	0.0	1.1	1	0	0	1	1	1	1	homogentisate	1,2-dioxygenase
Cupin_3	PF05899.7	gi|292655195|ref|YP_003535092.1|	-	0.0027	17.0	0.0	0.0037	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
cNMP_binding	PF00027.24	gi|292655195|ref|YP_003535092.1|	-	0.0047	16.7	0.0	0.0064	16.2	0.0	1.3	1	0	0	1	1	1	1	Cyclic	nucleotide-binding	domain
3-HAO	PF06052.7	gi|292655195|ref|YP_003535092.1|	-	0.03	13.7	0.0	0.03	13.7	0.0	1.1	1	0	0	1	1	1	0	3-hydroxyanthranilic	acid	dioxygenase
UDG	PF03167.14	gi|292655197|ref|YP_003535094.1|	-	8.1e-10	38.3	0.0	1e-09	38.0	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Lactamase_B	PF00753.22	gi|292655198|ref|YP_003535095.1|	-	2.6e-10	40.2	3.1	3.1e-10	40.0	2.2	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.1	gi|292655198|ref|YP_003535095.1|	-	0.005	16.2	0.0	0.0056	16.1	0.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DnaJ	PF00226.26	gi|292655199|ref|YP_003535096.1|	-	1.1e-21	76.3	0.6	1.5e-21	75.8	0.4	1.2	1	0	0	1	1	1	1	DnaJ	domain
SOBP	PF15279.1	gi|292655199|ref|YP_003535096.1|	-	0.35	11.2	2.3	0.48	10.7	1.6	1.3	1	0	0	1	1	1	0	Sine	oculis-binding	protein
DUF605	PF04652.11	gi|292655199|ref|YP_003535096.1|	-	3.1	7.1	12.0	4	6.7	8.3	1.1	1	0	0	1	1	1	0	Vta1	like
Lactamase_B	PF00753.22	gi|292655200|ref|YP_003535097.1|	-	2.7e-27	95.6	8.8	5.1e-27	94.7	6.1	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292655200|ref|YP_003535097.1|	-	4.1e-06	26.4	0.0	4.1e-06	26.4	0.0	1.8	1	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
RNA_pol_L_2	PF13656.1	gi|292655201|ref|YP_003535098.1|	-	5.2e-18	64.2	0.0	6.2e-18	64.0	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|292655201|ref|YP_003535098.1|	-	5.6e-07	28.5	0.0	6.9e-07	28.2	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF1684	PF07920.6	gi|292655202|ref|YP_003535099.1|	-	7e-52	175.0	0.0	8.6e-52	174.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
His_biosynth	PF00977.16	gi|292655203|ref|YP_003535100.1|	-	1.4e-80	269.8	0.1	1.6e-80	269.6	0.1	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|292655203|ref|YP_003535100.1|	-	2.4e-10	39.7	0.0	2.3e-06	26.6	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|292655203|ref|YP_003535100.1|	-	1.8e-07	30.5	0.1	0.00033	19.8	0.0	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|292655203|ref|YP_003535100.1|	-	1.4e-05	24.4	0.2	0.00097	18.3	0.0	2.1	2	0	0	2	2	2	1	Nitronate	monooxygenase
PcrB	PF01884.12	gi|292655203|ref|YP_003535100.1|	-	0.00011	21.4	0.0	0.00022	20.5	0.0	1.5	1	0	0	1	1	1	1	PcrB	family
DHO_dh	PF01180.16	gi|292655203|ref|YP_003535100.1|	-	0.00071	18.6	0.0	0.0051	15.8	0.0	1.9	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.20	gi|292655203|ref|YP_003535100.1|	-	0.006	15.5	0.5	0.011	14.6	0.0	1.6	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
G3P_antiterm	PF04309.7	gi|292655203|ref|YP_003535100.1|	-	0.033	13.2	0.0	0.057	12.4	0.0	1.3	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
TMP-TENI	PF02581.12	gi|292655203|ref|YP_003535100.1|	-	0.034	13.2	0.1	0.26	10.3	0.0	2.1	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
Glu_synthase	PF01645.12	gi|292655203|ref|YP_003535100.1|	-	0.042	12.7	0.0	0.065	12.1	0.0	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
IGPS	PF00218.16	gi|292655203|ref|YP_003535100.1|	-	0.086	11.8	0.0	0.3	10.0	0.0	1.8	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.13	gi|292655203|ref|YP_003535100.1|	-	0.098	11.4	0.1	0.16	10.7	0.0	1.4	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
Pex24p	PF06398.6	gi|292655204|ref|YP_003535101.1|	-	1.5	7.5	5.5	1.5	7.5	3.8	1.0	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
DUF4349	PF14257.1	gi|292655204|ref|YP_003535101.1|	-	2.2	7.4	6.8	2.3	7.4	4.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
DUF4183	PF13799.1	gi|292655205|ref|YP_003535102.1|	-	0.12	12.2	0.1	0.14	11.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4183)
ADH_zinc_N	PF00107.21	gi|292655206|ref|YP_003535103.1|	-	1.3e-32	112.0	0.8	3.3e-32	110.7	0.1	1.9	3	0	0	3	3	3	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|292655206|ref|YP_003535103.1|	-	9.1e-25	88.0	2.0	3.6e-24	86.0	0.5	2.1	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|292655206|ref|YP_003535103.1|	-	1.7e-12	47.0	0.0	3.7e-12	45.9	0.0	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
NAD_binding_10	PF13460.1	gi|292655206|ref|YP_003535103.1|	-	0.11	12.4	4.1	0.13	12.3	1.7	1.9	2	1	0	2	2	2	0	NADH(P)-binding
AIRS	PF00586.19	gi|292655207|ref|YP_003535104.1|	-	8.1e-40	134.9	10.4	3.3e-24	84.9	0.2	3.4	3	0	0	3	3	3	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|292655207|ref|YP_003535104.1|	-	1.9e-38	131.8	12.5	2.3e-26	92.6	0.7	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
PHP_C	PF13263.1	gi|292655208|ref|YP_003535105.1|	-	6.5e-22	76.7	0.7	7.4e-21	73.4	0.3	2.2	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|292655208|ref|YP_003535105.1|	-	2.2e-17	63.3	0.1	6.6e-17	61.8	0.1	1.7	1	1	0	1	1	1	1	PHP	domain
Asn_synthase	PF00733.16	gi|292655209|ref|YP_003535106.1|	-	4.5e-39	134.4	0.7	7.2e-39	133.8	0.5	1.2	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|292655209|ref|YP_003535106.1|	-	0.031	13.1	0.1	0.05	12.5	0.1	1.3	1	0	0	1	1	1	0	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|292655209|ref|YP_003535106.1|	-	0.14	10.7	0.1	0.21	10.1	0.1	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
NUDIX	PF00293.23	gi|292655210|ref|YP_003535107.1|	-	5.2e-11	42.3	0.1	6.3e-11	42.0	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
TFIIB	PF00382.14	gi|292655211|ref|YP_003535108.1|	-	2e-43	146.0	0.1	1.2e-21	76.2	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292655211|ref|YP_003535108.1|	-	1.8e-19	68.7	3.8	6.5e-19	66.9	3.0	1.7	2	0	0	2	2	2	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|292655211|ref|YP_003535108.1|	-	0.0018	17.5	4.1	0.031	13.5	0.0	3.9	4	0	0	4	4	4	1	Sigma-70,	region	4
zf-ribbon_3	PF13248.1	gi|292655211|ref|YP_003535108.1|	-	0.0042	16.2	0.8	0.007	15.5	0.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292655211|ref|YP_003535108.1|	-	0.014	15.7	1.9	0.014	15.7	1.3	1.8	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Cyclin_C	PF02984.14	gi|292655211|ref|YP_003535108.1|	-	0.016	15.1	0.0	2.1	8.2	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
A2L_zn_ribbon	PF08792.5	gi|292655211|ref|YP_003535108.1|	-	0.023	14.1	0.7	0.045	13.2	0.5	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DZR	PF12773.2	gi|292655211|ref|YP_003535108.1|	-	0.03	14.1	0.9	0.056	13.2	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TerY-C	PF15616.1	gi|292655211|ref|YP_003535108.1|	-	0.055	13.4	0.5	0.1	12.4	0.3	1.4	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
OrfB_Zn_ribbon	PF07282.6	gi|292655211|ref|YP_003535108.1|	-	0.062	12.9	1.1	0.13	11.9	0.8	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_24	PF13412.1	gi|292655211|ref|YP_003535108.1|	-	0.063	12.6	0.1	0.14	11.5	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Cyclin_N	PF00134.18	gi|292655211|ref|YP_003535108.1|	-	0.065	12.7	0.0	0.4	10.2	0.0	2.0	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
RRN7	PF11781.3	gi|292655211|ref|YP_003535108.1|	-	0.1	12.0	1.1	0.19	11.2	0.8	1.4	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
FdhE	PF04216.7	gi|292655211|ref|YP_003535108.1|	-	0.18	11.4	2.9	0.66	9.6	0.3	2.2	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
Zn_Tnp_IS1595	PF12760.2	gi|292655211|ref|YP_003535108.1|	-	0.37	10.6	1.9	0.45	10.3	0.2	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292655211|ref|YP_003535108.1|	-	0.59	10.1	6.8	0.51	10.3	1.0	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|292655211|ref|YP_003535108.1|	-	0.78	9.5	5.5	2.3	8.0	3.8	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Glu-tRNAGln	PF02686.10	gi|292655212|ref|YP_003535109.1|	-	2.3e-18	65.7	1.0	4.4e-18	64.8	0.7	1.5	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
Amidase	PF01425.16	gi|292655213|ref|YP_003535110.1|	-	1.2e-144	482.4	1.2	1.5e-144	482.1	0.8	1.0	1	0	0	1	1	1	1	Amidase
TrkA_N	PF02254.13	gi|292655214|ref|YP_003535111.1|	-	5.3e-27	94.1	2.6	9.4e-27	93.3	1.8	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|292655214|ref|YP_003535111.1|	-	2e-14	52.9	1.3	2.6e-13	49.3	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.12	gi|292655214|ref|YP_003535111.1|	-	7.6e-07	29.4	0.5	6e-06	26.6	0.2	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.1	gi|292655214|ref|YP_003535111.1|	-	6.4e-06	26.3	0.5	1.2e-05	25.4	0.3	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
XdhC_C	PF13478.1	gi|292655214|ref|YP_003535111.1|	-	5.1e-05	23.5	0.7	7.9e-05	22.9	0.1	1.6	2	0	0	2	2	2	1	XdhC	Rossmann	domain
Shikimate_DH	PF01488.15	gi|292655214|ref|YP_003535111.1|	-	6.4e-05	23.0	0.7	0.00011	22.2	0.5	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.10	gi|292655214|ref|YP_003535111.1|	-	9.6e-05	22.2	0.5	0.00014	21.7	0.1	1.5	2	0	0	2	2	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ADH_zinc_N	PF00107.21	gi|292655214|ref|YP_003535111.1|	-	0.0001	21.8	0.3	0.021	14.3	1.1	2.2	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
3HCDH_N	PF02737.13	gi|292655214|ref|YP_003535111.1|	-	0.00012	21.7	0.5	0.0002	21.0	0.3	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|292655214|ref|YP_003535111.1|	-	0.00017	20.7	0.9	0.00027	20.0	0.5	1.4	1	1	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_10	PF13460.1	gi|292655214|ref|YP_003535111.1|	-	0.0003	20.8	0.5	0.00053	20.0	0.4	1.5	1	0	0	1	1	1	1	NADH(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|292655214|ref|YP_003535111.1|	-	0.0014	18.0	1.4	0.018	14.4	0.3	2.2	1	1	1	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|292655214|ref|YP_003535111.1|	-	0.0016	18.9	0.5	0.0031	18.0	0.3	1.6	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox	PF00070.22	gi|292655214|ref|YP_003535111.1|	-	0.0021	18.4	1.4	0.011	16.1	0.6	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Peripla_BP_3	PF13377.1	gi|292655214|ref|YP_003535111.1|	-	0.0026	17.7	0.2	0.0044	17.0	0.1	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein-like	domain
ApbA	PF02558.11	gi|292655214|ref|YP_003535111.1|	-	0.0049	16.3	0.1	0.011	15.1	0.0	1.7	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NmrA	PF05368.8	gi|292655214|ref|YP_003535111.1|	-	0.0091	15.2	0.2	0.016	14.4	0.1	1.4	1	0	0	1	1	1	1	NmrA-like	family
NAD_Gly3P_dh_N	PF01210.18	gi|292655214|ref|YP_003535111.1|	-	0.012	15.3	0.4	0.02	14.6	0.3	1.5	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
adh_short	PF00106.20	gi|292655214|ref|YP_003535111.1|	-	0.019	14.8	0.8	0.031	14.1	0.6	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
KR	PF08659.5	gi|292655214|ref|YP_003535111.1|	-	0.024	14.3	0.2	0.034	13.8	0.1	1.3	1	0	0	1	1	1	0	KR	domain
2-Hacid_dh_C	PF02826.14	gi|292655214|ref|YP_003535111.1|	-	0.035	13.2	0.1	0.053	12.6	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.12	gi|292655214|ref|YP_003535111.1|	-	0.068	12.2	0.2	0.1	11.6	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
DRTGG	PF07085.7	gi|292655214|ref|YP_003535111.1|	-	0.11	12.0	1.9	0.22	11.1	0.5	2.1	2	1	0	2	2	2	0	DRTGG	domain
CPSase_L_chain	PF00289.17	gi|292655214|ref|YP_003535111.1|	-	0.12	12.4	0.7	0.85	9.7	0.2	2.3	1	1	1	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ThiF	PF00899.16	gi|292655214|ref|YP_003535111.1|	-	1.8	8.4	4.2	9.1	6.0	0.2	2.3	1	1	1	2	2	2	0	ThiF	family
TrkH	PF02386.11	gi|292655215|ref|YP_003535112.1|	-	8.5e-73	244.9	9.1	1.1e-70	238.0	3.5	2.3	2	1	0	2	2	2	2	Cation	transport	protein
TrkH	PF02386.11	gi|292655216|ref|YP_003535113.1|	-	4.2e-55	186.7	12.1	7.7e-55	185.8	3.8	2.2	2	0	0	2	2	2	2	Cation	transport	protein
Form-deh_trans	PF09163.6	gi|292655216|ref|YP_003535113.1|	-	4	7.0	9.8	4.4	6.8	0.9	3.7	3	0	0	3	3	3	0	Formate	dehydrogenase	N,	transmembrane
TrkA_N	PF02254.13	gi|292655217|ref|YP_003535114.1|	-	2.1e-51	172.7	9.0	3.3e-29	101.2	0.8	3.1	3	0	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|292655217|ref|YP_003535114.1|	-	6.9e-30	102.4	8.0	9.3e-15	53.9	0.1	3.2	3	1	0	3	3	3	2	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|292655217|ref|YP_003535114.1|	-	1.4e-11	44.5	0.9	2.8e-06	27.5	0.3	2.6	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|292655217|ref|YP_003535114.1|	-	4e-10	39.9	0.3	0.00031	20.8	0.1	2.5	2	1	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_10	PF13460.1	gi|292655217|ref|YP_003535114.1|	-	1.8e-07	31.3	4.1	0.0035	17.3	0.6	2.3	2	0	0	2	2	2	2	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|292655217|ref|YP_003535114.1|	-	3.6e-07	29.5	1.8	0.00066	18.7	0.2	2.2	2	0	0	2	2	2	2	Saccharopine	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|292655217|ref|YP_003535114.1|	-	7.2e-07	28.7	0.0	3.2e-06	26.6	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|292655217|ref|YP_003535114.1|	-	4.3e-06	27.0	0.1	0.002	18.5	0.1	3.0	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|292655217|ref|YP_003535114.1|	-	6.4e-06	25.9	0.0	0.0018	18.0	0.0	2.6	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.14	gi|292655217|ref|YP_003535114.1|	-	1.3e-05	24.4	0.0	0.016	14.2	0.0	2.3	2	0	0	2	2	2	2	FAD	binding	domain
3HCDH_N	PF02737.13	gi|292655217|ref|YP_003535114.1|	-	5.2e-05	22.9	0.1	0.0089	15.7	0.1	2.4	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292655217|ref|YP_003535114.1|	-	0.00017	21.5	0.1	0.14	11.9	0.0	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
CPSase_L_chain	PF00289.17	gi|292655217|ref|YP_003535114.1|	-	0.0003	20.8	0.2	0.88	9.7	0.0	3.4	4	0	0	4	4	4	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Pyr_redox	PF00070.22	gi|292655217|ref|YP_003535114.1|	-	0.00031	21.0	0.2	0.74	10.2	0.0	3.0	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.1	gi|292655217|ref|YP_003535114.1|	-	0.00047	20.4	0.3	0.25	11.6	0.0	2.6	2	1	0	2	2	2	1	XdhC	Rossmann	domain
ApbA	PF02558.11	gi|292655217|ref|YP_003535114.1|	-	0.00099	18.5	0.0	0.0075	15.7	0.0	2.2	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.14	gi|292655217|ref|YP_003535114.1|	-	0.0013	17.8	0.0	1.5	7.9	0.0	2.4	2	0	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HEM4	PF02602.10	gi|292655217|ref|YP_003535114.1|	-	0.0016	17.7	0.1	0.048	12.8	0.0	2.3	1	1	1	2	2	2	1	Uroporphyrinogen-III	synthase	HemD
DUF1188	PF06690.6	gi|292655217|ref|YP_003535114.1|	-	0.0019	17.3	0.0	0.0054	15.9	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1188)
DAO	PF01266.19	gi|292655217|ref|YP_003535114.1|	-	0.002	17.0	0.1	0.22	10.3	0.0	2.5	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_2	PF03446.10	gi|292655217|ref|YP_003535114.1|	-	0.0025	17.6	0.0	0.29	10.9	0.0	2.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Oxidored_nitro	PF00148.14	gi|292655217|ref|YP_003535114.1|	-	0.0078	14.9	0.1	0.023	13.3	0.0	1.8	2	0	0	2	2	2	1	Nitrogenase	component	1	type	Oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655217|ref|YP_003535114.1|	-	0.08	11.8	0.2	0.27	10.1	0.1	2.0	2	1	1	3	3	3	0	Lycopene	cyclase	protein
ThiF	PF00899.16	gi|292655217|ref|YP_003535114.1|	-	0.71	9.6	9.4	1.7	8.4	0.2	4.1	2	2	2	4	4	4	0	ThiF	family
Rossmann-like	PF10727.4	gi|292655217|ref|YP_003535114.1|	-	1.1	9.0	4.6	4.3	7.0	0.5	2.9	2	2	0	2	2	2	0	Rossmann-like	domain
DUF2708	PF10917.3	gi|292655217|ref|YP_003535114.1|	-	1.4	8.7	0.0	1.4	8.7	0.0	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2708)
Polyketide_cyc2	PF10604.4	gi|292655218|ref|YP_003535115.1|	-	2.5e-12	47.1	1.0	3.2e-12	46.8	0.7	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|292655218|ref|YP_003535115.1|	-	2.3e-09	37.3	0.1	5.3e-09	36.1	0.1	1.6	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|292655218|ref|YP_003535115.1|	-	0.0037	17.3	0.1	0.0061	16.6	0.1	1.4	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DAO	PF01266.19	gi|292655220|ref|YP_003535117.1|	-	1.1e-09	37.6	4.4	3.3e-05	22.9	0.5	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292655220|ref|YP_003535117.1|	-	1.2e-09	38.3	1.4	0.0001	22.2	0.1	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292655220|ref|YP_003535117.1|	-	3e-08	32.9	3.4	9.5e-07	27.9	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292655220|ref|YP_003535117.1|	-	5.1e-05	23.2	0.1	0.00011	22.1	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|292655220|ref|YP_003535117.1|	-	0.00086	18.4	2.6	0.0023	17.0	0.5	2.1	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|292655220|ref|YP_003535117.1|	-	0.0023	16.8	0.1	0.0037	16.1	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|292655220|ref|YP_003535117.1|	-	0.0028	16.8	0.1	0.0046	16.0	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|292655220|ref|YP_003535117.1|	-	0.0055	15.8	4.0	0.0092	15.1	0.7	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292655220|ref|YP_003535117.1|	-	0.029	12.8	0.1	0.048	12.1	0.0	1.3	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox	PF00070.22	gi|292655220|ref|YP_003535117.1|	-	0.031	14.6	0.1	0.08	13.3	0.1	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655220|ref|YP_003535117.1|	-	0.031	13.1	0.5	0.13	11.1	0.1	1.9	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.1	gi|292655220|ref|YP_003535117.1|	-	0.046	13.7	2.3	0.08	12.9	0.4	1.9	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|292655220|ref|YP_003535117.1|	-	0.085	11.4	4.2	0.75	8.3	0.8	2.4	2	1	1	3	3	3	0	Tryptophan	halogenase
NAD_binding_7	PF13241.1	gi|292655220|ref|YP_003535117.1|	-	0.12	12.6	0.0	0.19	11.9	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DFP	PF04127.10	gi|292655221|ref|YP_003535118.1|	-	1.9e-46	158.0	6.2	1.4e-45	155.2	2.3	2.3	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|292655221|ref|YP_003535118.1|	-	2.1e-28	98.5	0.2	2.1e-28	98.5	0.1	1.8	3	0	0	3	3	3	1	Flavoprotein
Glyco_trans_4_4	PF13579.1	gi|292655221|ref|YP_003535118.1|	-	0.0056	16.8	12.8	1.4	9.0	4.2	3.4	2	1	0	2	2	2	2	Glycosyl	transferase	4-like	domain
PhaG_MnhG_YufB	PF03334.9	gi|292655222|ref|YP_003535119.1|	-	1.7e-25	88.8	7.9	2.9e-25	88.0	5.5	1.4	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
Na_Ala_symp	PF01235.12	gi|292655222|ref|YP_003535119.1|	-	0.37	9.3	4.3	0.42	9.1	3.0	1.1	1	0	0	1	1	1	0	Sodium:alanine	symporter	family
DUF2157	PF09925.4	gi|292655222|ref|YP_003535119.1|	-	0.72	9.4	6.5	1.1	8.8	4.5	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
MrpF_PhaF	PF04066.8	gi|292655223|ref|YP_003535120.1|	-	9.8e-19	67.3	2.7	9.8e-19	67.3	1.9	1.6	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF3493	PF11998.3	gi|292655223|ref|YP_003535120.1|	-	0.13	12.1	0.6	0.24	11.2	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3493)
PhaG_MnhG_YufB	PF03334.9	gi|292655223|ref|YP_003535120.1|	-	0.29	11.2	4.1	0.4	10.7	2.8	1.2	1	0	0	1	1	1	0	Na+/H+	antiporter	subunit
DUF1469	PF07332.6	gi|292655223|ref|YP_003535120.1|	-	7.4	6.3	10.4	1.8	8.3	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
MNHE	PF01899.11	gi|292655224|ref|YP_003535121.1|	-	4.8e-44	149.7	0.3	5.5e-44	149.5	0.2	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Oxidored_q1	PF00361.15	gi|292655225|ref|YP_003535122.1|	-	4.2e-48	163.9	8.3	4.2e-48	163.9	5.8	3.3	3	1	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Phage_tail_X	PF05489.7	gi|292655225|ref|YP_003535122.1|	-	0.033	13.6	1.7	0.27	10.7	0.0	2.9	3	0	0	3	3	3	0	Phage	Tail	Protein	X
Oxidored_q2	PF00420.19	gi|292655226|ref|YP_003535123.1|	-	2.7e-26	90.9	0.5	3.2e-26	90.7	0.4	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF1049	PF06305.6	gi|292655226|ref|YP_003535123.1|	-	4.4	6.8	6.4	8	6.0	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
MnhB	PF04039.8	gi|292655227|ref|YP_003535124.1|	-	3e-24	85.4	12.5	6.4e-22	77.9	8.6	2.0	1	1	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
MscS_TM	PF12794.2	gi|292655227|ref|YP_003535124.1|	-	0.052	12.1	0.6	0.073	11.6	0.4	1.2	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
FTCD_C	PF04961.7	gi|292655227|ref|YP_003535124.1|	-	0.13	11.6	0.0	0.18	11.2	0.0	1.2	1	0	0	1	1	1	0	Formiminotransferase-cyclodeaminase
Oxidored_q1	PF00361.15	gi|292655228|ref|YP_003535125.1|	-	1.9e-66	224.1	9.0	1.9e-66	224.1	6.2	2.2	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
DUF4040	PF13244.1	gi|292655228|ref|YP_003535125.1|	-	3e-14	52.7	13.6	3e-14	52.7	9.4	4.5	6	0	0	6	6	6	1	Domain	of	unknown	function	(DUF4040)
Oxidored_q1_N	PF00662.15	gi|292655228|ref|YP_003535125.1|	-	1.4e-08	34.1	0.1	1.6e-07	30.7	0.0	2.9	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
HTH_20	PF12840.2	gi|292655229|ref|YP_003535126.1|	-	1.1e-09	37.9	1.2	1.4e-09	37.5	0.8	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292655229|ref|YP_003535126.1|	-	1.9e-08	33.5	0.0	3.8e-08	32.5	0.0	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292655229|ref|YP_003535126.1|	-	2.5e-07	30.2	0.0	4.4e-07	29.5	0.0	1.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292655229|ref|YP_003535126.1|	-	2.5e-06	27.0	0.4	3.5e-06	26.5	0.2	1.2	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|292655229|ref|YP_003535126.1|	-	5.4e-06	25.8	1.6	1.3e-05	24.6	1.1	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655229|ref|YP_003535126.1|	-	1.2e-05	24.8	0.1	1.9e-05	24.2	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|292655229|ref|YP_003535126.1|	-	1.8e-05	24.9	0.3	3.3e-05	24.1	0.2	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|292655229|ref|YP_003535126.1|	-	6.9e-05	22.3	0.5	0.00011	21.7	0.4	1.4	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655229|ref|YP_003535126.1|	-	7.3e-05	22.3	0.1	0.0002	20.9	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.17	gi|292655229|ref|YP_003535126.1|	-	0.0011	18.6	0.1	0.0015	18.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.1	gi|292655229|ref|YP_003535126.1|	-	0.0013	18.3	0.0	0.0022	17.5	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
PadR	PF03551.9	gi|292655229|ref|YP_003535126.1|	-	0.0062	16.2	0.0	0.009	15.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TFIIE_alpha	PF02002.12	gi|292655229|ref|YP_003535126.1|	-	0.024	14.1	0.0	0.03	13.8	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
FUR	PF01475.14	gi|292655229|ref|YP_003535126.1|	-	0.024	14.5	0.0	0.031	14.2	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Sigma70_r4	PF04545.11	gi|292655229|ref|YP_003535126.1|	-	0.06	12.6	0.0	0.084	12.1	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_8	PF02954.14	gi|292655229|ref|YP_003535126.1|	-	0.061	12.8	1.1	0.25	10.8	0.7	2.1	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
DAP_B	PF07930.7	gi|292655229|ref|YP_003535126.1|	-	0.091	12.4	0.2	0.27	11.0	0.0	1.9	1	1	1	2	2	2	0	D-aminopeptidase,	domain	B
HTH_28	PF13518.1	gi|292655229|ref|YP_003535126.1|	-	0.13	12.2	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FIST_C	PF10442.4	gi|292655230|ref|YP_003535127.1|	-	0.02	14.8	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	FIST	C	domain
Pribosyltran	PF00156.22	gi|292655231|ref|YP_003535128.1|	-	1.8e-19	69.6	0.8	1.8e-19	69.6	0.6	1.6	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|292655231|ref|YP_003535128.1|	-	0.013	14.7	0.0	0.018	14.2	0.0	1.3	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
PRTase_3	PF15610.1	gi|292655231|ref|YP_003535128.1|	-	0.12	11.2	0.2	0.16	10.8	0.1	1.2	1	0	0	1	1	1	0	PRTase	ComF-like
DJ-1_PfpI	PF01965.19	gi|292655232|ref|YP_003535129.1|	-	7.9e-17	61.0	0.2	2.1e-16	59.7	0.1	1.7	1	1	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|292655232|ref|YP_003535129.1|	-	0.024	13.9	0.2	0.36	10.0	0.0	2.2	2	0	0	2	2	2	0	Putative	amidotransferase
HNH_2	PF13391.1	gi|292655233|ref|YP_003535130.1|	-	1.8e-08	34.0	0.0	3.7e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.18	gi|292655233|ref|YP_003535130.1|	-	0.00031	20.5	1.2	0.00057	19.6	0.8	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HTH_5	PF01022.15	gi|292655234|ref|YP_003535131.1|	-	1.6e-05	24.4	0.0	2.1e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292655234|ref|YP_003535131.1|	-	0.00012	21.8	0.1	0.0002	21.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292655234|ref|YP_003535131.1|	-	0.017	14.8	0.0	0.025	14.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292655234|ref|YP_003535131.1|	-	0.018	14.5	0.1	0.029	13.9	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292655234|ref|YP_003535131.1|	-	0.028	13.7	0.0	0.041	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|292655234|ref|YP_003535131.1|	-	0.036	13.7	0.0	0.052	13.2	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF937	PF06078.6	gi|292655234|ref|YP_003535131.1|	-	0.036	14.2	0.0	0.044	14.0	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF937)
Cytochrom_B558a	PF05038.8	gi|292655234|ref|YP_003535131.1|	-	0.1	12.2	0.0	0.12	11.9	0.0	1.1	1	0	0	1	1	1	0	Cytochrome	Cytochrome	b558	alpha-subunit
HTH_10	PF04967.7	gi|292655234|ref|YP_003535131.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_11	PF08279.7	gi|292655234|ref|YP_003535131.1|	-	0.12	12.0	0.1	0.34	10.6	0.0	1.7	1	1	1	2	2	2	0	HTH	domain
zf-ISL3	PF14690.1	gi|292655234|ref|YP_003535131.1|	-	0.17	11.9	2.2	8.1	6.5	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn-ribbon_8	PF09723.5	gi|292655234|ref|YP_003535131.1|	-	1.4	8.9	5.9	2.4	8.1	3.1	2.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-trcl	PF13451.1	gi|292655234|ref|YP_003535131.1|	-	1.5	8.5	6.3	0.27	10.9	0.7	2.1	1	1	1	2	2	2	0	Probable	zinc-binding	domain
UPF0547	PF10571.4	gi|292655234|ref|YP_003535131.1|	-	1.6	8.4	8.1	7.8	6.2	1.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|292655234|ref|YP_003535131.1|	-	5.6	6.5	7.4	19	4.8	1.6	2.1	1	1	2	3	3	3	0	zinc-ribbon	domain
NTP_transferase	PF00483.18	gi|292655235|ref|YP_003535132.1|	-	2.1e-35	122.2	0.0	3e-35	121.7	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|292655235|ref|YP_003535132.1|	-	4.9e-09	36.4	0.0	6.2e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
FTCD	PF02971.9	gi|292655235|ref|YP_003535132.1|	-	0.029	14.0	0.0	0.055	13.0	0.0	1.4	1	0	0	1	1	1	0	Formiminotransferase	domain
IspD	PF01128.14	gi|292655235|ref|YP_003535132.1|	-	0.061	12.8	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep	PF00132.19	gi|292655235|ref|YP_003535132.1|	-	0.1	12.1	0.7	3.5	7.2	0.3	3.0	2	1	1	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
ATP_bind_4	PF01902.12	gi|292655236|ref|YP_003535133.1|	-	4.2e-56	189.7	0.0	1.1e-55	188.4	0.0	1.6	1	1	0	1	1	1	1	ATP-binding	region
QueC	PF06508.8	gi|292655236|ref|YP_003535133.1|	-	0.043	13.0	0.0	0.06	12.6	0.0	1.2	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
NIR_SIR_ferr	PF03460.12	gi|292655236|ref|YP_003535133.1|	-	0.13	11.9	0.1	2.1	8.0	0.0	2.8	2	1	1	3	3	3	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
PAPS_reduct	PF01507.14	gi|292655237|ref|YP_003535134.1|	-	4.2e-18	65.7	0.0	3.2e-14	53.1	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_4	PF01902.12	gi|292655237|ref|YP_003535134.1|	-	0.0015	17.9	0.0	0.0053	16.1	0.0	1.8	2	0	0	2	2	2	1	ATP-binding	region
DUF2419	PF10343.4	gi|292655238|ref|YP_003535135.1|	-	0.065	12.4	0.0	0.09	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2419)
Glutaredoxin	PF00462.19	gi|292655239|ref|YP_003535136.1|	-	2.1e-15	56.4	0.0	3e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
Pribosyltran	PF00156.22	gi|292655240|ref|YP_003535137.1|	-	2.8e-24	85.2	0.0	5.2e-24	84.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.1	gi|292655240|ref|YP_003535137.1|	-	0.00017	21.1	0.0	0.00035	20.1	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|292655240|ref|YP_003535137.1|	-	0.0018	17.8	0.2	0.066	12.8	0.0	2.5	2	0	0	2	2	2	1	HTH	domain
HTH_7	PF02796.10	gi|292655240|ref|YP_003535137.1|	-	0.0057	16.4	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
PRTase_2	PF15609.1	gi|292655240|ref|YP_003535137.1|	-	0.0094	15.2	0.1	0.58	9.4	0.0	2.1	2	0	0	2	2	2	1	Phosphoribosyl	transferase
Sigma70_r4	PF04545.11	gi|292655240|ref|YP_003535137.1|	-	0.031	13.5	0.0	0.054	12.8	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.1	gi|292655240|ref|YP_003535137.1|	-	0.039	13.3	0.0	0.07	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
CENP-B_N	PF04218.8	gi|292655240|ref|YP_003535137.1|	-	0.06	12.7	0.0	0.45	9.9	0.0	2.0	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_28	PF13518.1	gi|292655240|ref|YP_003535137.1|	-	0.067	13.2	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655240|ref|YP_003535137.1|	-	0.13	11.9	0.0	0.39	10.4	0.0	1.7	2	0	0	2	2	2	0	MarR	family
ADH_N	PF08240.7	gi|292655241|ref|YP_003535138.1|	-	8.1e-10	38.4	0.0	1.3e-09	37.7	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|292655241|ref|YP_003535138.1|	-	4.7e-07	29.4	0.0	9.1e-07	28.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Shikimate_DH	PF01488.15	gi|292655241|ref|YP_003535138.1|	-	0.0059	16.7	0.0	0.018	15.1	0.0	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Lyase_1	PF00206.15	gi|292655242|ref|YP_003535139.1|	-	6.3e-50	170.1	0.0	8.2e-50	169.7	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.6	gi|292655242|ref|YP_003535139.1|	-	2.1e-41	140.3	0.0	4e-41	139.4	0.0	1.5	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
AICARFT_IMPCHas	PF01808.13	gi|292655243|ref|YP_003535140.1|	-	2e-84	283.3	0.0	2.8e-84	282.9	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.14	gi|292655243|ref|YP_003535140.1|	-	1.3e-41	142.1	0.0	2.9e-41	140.9	0.0	1.6	2	0	0	2	2	2	1	Formyl	transferase
PcrB	PF01884.12	gi|292655244|ref|YP_003535141.1|	-	2.3e-36	125.2	0.1	4.1e-36	124.3	0.0	1.4	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|292655244|ref|YP_003535141.1|	-	0.00022	20.5	0.0	0.00036	19.8	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Trp_syntA	PF00290.15	gi|292655244|ref|YP_003535141.1|	-	0.0042	15.6	0.0	0.37	9.2	0.0	2.7	3	0	0	3	3	3	2	Tryptophan	synthase	alpha	chain
Usp	PF00582.21	gi|292655245|ref|YP_003535142.1|	-	3.4e-33	114.8	3.0	3.8e-33	114.6	2.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Pterin_bind	PF00809.17	gi|292655246|ref|YP_003535143.1|	-	9.2e-66	221.1	0.1	1.5e-65	220.5	0.1	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.7	gi|292655246|ref|YP_003535143.1|	-	3.6e-14	53.2	0.0	6.2e-14	52.4	0.0	1.4	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.16	gi|292655246|ref|YP_003535143.1|	-	3.5e-10	39.7	0.0	1.7e-09	37.5	0.0	2.2	2	0	0	2	2	2	1	Mur	ligase	family,	glutamate	ligase	domain
NRDE	PF05742.7	gi|292655247|ref|YP_003535144.1|	-	2.2e-24	86.2	0.0	4.2e-23	82.0	0.0	2.0	2	0	0	2	2	2	2	NRDE	protein
MarR	PF01047.17	gi|292655248|ref|YP_003535145.1|	-	0.00064	19.3	0.0	0.00088	18.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|292655248|ref|YP_003535145.1|	-	0.00079	19.2	0.0	0.0012	18.6	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.2	gi|292655248|ref|YP_003535145.1|	-	0.003	17.2	0.0	0.0043	16.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Proteasome	PF00227.21	gi|292655249|ref|YP_003535146.1|	-	5.1e-58	195.5	0.0	6.4e-58	195.1	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|292655249|ref|YP_003535146.1|	-	2.4e-14	52.3	0.1	4.4e-14	51.4	0.1	1.5	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
RNase_P_Rpp14	PF01900.14	gi|292655250|ref|YP_003535147.1|	-	1.2e-21	76.6	0.0	1.8e-21	76.0	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
Methyltransf_31	PF13847.1	gi|292655251|ref|YP_003535148.1|	-	5.2e-18	65.0	0.0	8e-18	64.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655251|ref|YP_003535148.1|	-	7.8e-15	55.4	0.3	1.3e-14	54.7	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655251|ref|YP_003535148.1|	-	4.3e-14	52.7	0.0	8.4e-14	51.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655251|ref|YP_003535148.1|	-	7.1e-12	45.6	0.0	1.3e-11	44.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655251|ref|YP_003535148.1|	-	3.1e-10	40.3	0.0	5.8e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655251|ref|YP_003535148.1|	-	1.9e-09	37.6	0.1	2.6e-09	37.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292655251|ref|YP_003535148.1|	-	8e-09	34.9	0.0	1.5e-08	34.0	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|292655251|ref|YP_003535148.1|	-	8.4e-08	31.7	0.0	1.3e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.1	gi|292655251|ref|YP_003535148.1|	-	1.2e-07	31.5	0.0	2e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|292655251|ref|YP_003535148.1|	-	4.3e-05	22.7	0.1	6.1e-05	22.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0020	PF01170.13	gi|292655251|ref|YP_003535148.1|	-	0.00013	21.5	0.0	0.00021	20.9	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
RrnaAD	PF00398.15	gi|292655251|ref|YP_003535148.1|	-	0.00039	19.5	0.0	0.0005	19.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_32	PF13679.1	gi|292655251|ref|YP_003535148.1|	-	0.0013	18.3	0.0	0.002	17.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
tRNA_U5-meth_tr	PF05958.6	gi|292655251|ref|YP_003535148.1|	-	0.003	16.3	0.0	0.0044	15.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
GSP_synth	PF03738.9	gi|292655251|ref|YP_003535148.1|	-	0.0031	17.7	0.0	0.61	10.3	0.0	2.3	2	0	0	2	2	2	1	Glutathionylspermidine	synthase	preATP-grasp
DREV	PF05219.7	gi|292655251|ref|YP_003535148.1|	-	0.0044	15.9	0.0	0.0066	15.3	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_4	PF02390.12	gi|292655251|ref|YP_003535148.1|	-	0.01	14.9	0.0	0.015	14.3	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.14	gi|292655251|ref|YP_003535148.1|	-	0.015	14.8	0.0	0.022	14.3	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|292655251|ref|YP_003535148.1|	-	0.03	13.4	0.0	0.04	12.9	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|292655251|ref|YP_003535148.1|	-	0.14	11.5	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
RNase_P_p30	PF01876.11	gi|292655252|ref|YP_003535149.1|	-	1.2e-32	112.1	0.0	1.6e-32	111.8	0.0	1.2	1	0	0	1	1	1	1	RNase	P	subunit	p30
Peptidase_M20	PF01546.23	gi|292655254|ref|YP_003535151.1|	-	2.7e-26	92.2	0.4	4e-26	91.6	0.3	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292655254|ref|YP_003535151.1|	-	1.3e-18	66.7	0.0	2.7e-18	65.7	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
DAP_epimerase	PF01678.14	gi|292655255|ref|YP_003535152.1|	-	8e-45	151.6	1.6	3.2e-23	81.9	0.2	2.3	2	0	0	2	2	2	2	Diaminopimelate	epimerase
Pro_racemase	PF05544.6	gi|292655255|ref|YP_003535152.1|	-	0.053	12.3	1.1	2.9	6.6	0.2	2.2	2	0	0	2	2	2	0	Proline	racemase
Orn_Arg_deC_N	PF02784.11	gi|292655256|ref|YP_003535153.1|	-	7.6e-41	139.9	0.0	9.7e-41	139.5	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.17	gi|292655256|ref|YP_003535153.1|	-	2.5e-19	69.1	0.0	4.7e-19	68.2	0.0	1.4	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
THDPS_N_2	PF14805.1	gi|292655257|ref|YP_003535154.1|	-	3.3e-16	58.8	0.1	4.8e-16	58.3	0.1	1.2	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.19	gi|292655257|ref|YP_003535154.1|	-	3.2e-11	42.2	6.6	9.9e-05	21.6	0.2	3.2	2	1	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|292655257|ref|YP_003535154.1|	-	0.0004	19.8	10.9	0.0015	18.0	0.5	3.3	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
DapB_C	PF05173.9	gi|292655258|ref|YP_003535155.1|	-	1.8e-37	128.0	0.0	2.5e-37	127.5	0.0	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.15	gi|292655258|ref|YP_003535155.1|	-	6.3e-25	87.4	0.1	1e-24	86.8	0.1	1.3	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|292655258|ref|YP_003535155.1|	-	7.4e-05	23.0	0.3	0.00013	22.2	0.2	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|292655258|ref|YP_003535155.1|	-	7.8e-05	22.7	1.9	0.00011	22.2	1.3	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|292655258|ref|YP_003535155.1|	-	0.0002	20.4	0.0	0.00028	20.0	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_3	PF03447.11	gi|292655258|ref|YP_003535155.1|	-	0.00023	21.5	0.1	0.00047	20.5	0.1	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Peripla_BP_6	PF13458.1	gi|292655258|ref|YP_003535155.1|	-	0.0038	16.6	0.7	0.006	15.9	0.5	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
RmlD_sub_bind	PF04321.12	gi|292655258|ref|YP_003535155.1|	-	0.018	13.9	0.0	0.029	13.2	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
ADH_zinc_N	PF00107.21	gi|292655258|ref|YP_003535155.1|	-	0.025	14.1	0.1	0.037	13.5	0.1	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
GFO_IDH_MocA	PF01408.17	gi|292655258|ref|YP_003535155.1|	-	0.035	14.6	0.2	0.058	13.9	0.1	1.3	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Epimerase	PF01370.16	gi|292655258|ref|YP_003535155.1|	-	0.046	13.1	0.1	0.07	12.5	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
CoA_binding_2	PF13380.1	gi|292655258|ref|YP_003535155.1|	-	0.11	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	CoA	binding	domain
DHDPS	PF00701.17	gi|292655259|ref|YP_003535156.1|	-	4.2e-93	311.1	0.0	4.8e-93	310.9	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PEP_mutase	PF13714.1	gi|292655259|ref|YP_003535156.1|	-	3.9e-05	22.9	0.3	0.00019	20.7	0.1	1.9	2	0	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
ThiG	PF05690.9	gi|292655259|ref|YP_003535156.1|	-	0.0091	15.0	0.0	0.015	14.3	0.0	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NYN	PF01936.13	gi|292655260|ref|YP_003535157.1|	-	2.3e-36	125.2	0.2	2.9e-36	124.9	0.2	1.0	1	0	0	1	1	1	1	NYN	domain
FMO-like	PF00743.14	gi|292655260|ref|YP_003535157.1|	-	0.046	11.9	0.0	0.06	11.5	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
DUF2529	PF10740.4	gi|292655260|ref|YP_003535157.1|	-	0.055	12.8	0.1	0.13	11.6	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2529)
SNN_transmemb	PF09049.5	gi|292655262|ref|YP_003535159.1|	-	3.2	7.5	5.9	0.77	9.5	1.1	2.0	2	0	0	2	2	2	0	Stannin	transmembrane
TGT_C2	PF14810.1	gi|292655263|ref|YP_003535160.1|	-	4.1e-25	87.4	0.1	6.5e-25	86.7	0.1	1.3	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.15	gi|292655263|ref|YP_003535160.1|	-	9.4e-16	57.3	0.2	1.5e-15	56.6	0.1	1.4	1	0	0	1	1	1	1	PUA	domain
TruB-C_2	PF09157.6	gi|292655263|ref|YP_003535160.1|	-	0.045	13.6	0.8	11	5.9	0.0	3.0	2	1	1	3	3	3	0	Pseudouridine	synthase	II	TruB,	C-terminal
DDE_Tnp_1	PF01609.16	gi|292655264|ref|YP_003535161.1|	-	5.4e-24	84.9	0.0	7e-24	84.5	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292655264|ref|YP_003535161.1|	-	0.014	14.4	0.0	0.022	13.7	0.0	1.3	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
DUF1119	PF06550.6	gi|292655265|ref|YP_003535162.1|	-	2.7e-81	272.7	22.3	9.9e-81	270.9	15.4	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1119)
Peptidase_A22B	PF04258.8	gi|292655265|ref|YP_003535162.1|	-	2.3e-05	23.9	7.0	0.00082	18.8	1.0	2.9	2	1	0	3	3	3	2	Signal	peptide	peptidase
Presenilin	PF01080.12	gi|292655265|ref|YP_003535162.1|	-	4.5	5.9	10.0	0.16	10.7	1.6	2.3	3	1	0	3	3	3	0	Presenilin
Gar1	PF04410.9	gi|292655266|ref|YP_003535163.1|	-	6.5e-08	32.1	0.0	7.1e-08	32.0	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
DNA_gyraseA_C	PF03989.8	gi|292655266|ref|YP_003535163.1|	-	0.086	12.1	0.1	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	DNA	gyrase	C-terminal	domain,	beta-propeller
SRP19	PF01922.12	gi|292655267|ref|YP_003535164.1|	-	1.3e-27	96.2	0.2	1.4e-27	96.1	0.1	1.0	1	0	0	1	1	1	1	SRP19	protein
Med1	PF10744.4	gi|292655267|ref|YP_003535164.1|	-	0.0061	15.3	0.0	0.0068	15.2	0.0	1.0	1	0	0	1	1	1	1	Mediator	of	RNA	polymerase	II	transcription	subunit	1
TMV_coat	PF00721.16	gi|292655267|ref|YP_003535164.1|	-	0.027	14.4	0.1	0.031	14.2	0.0	1.1	1	0	0	1	1	1	0	Virus	coat	protein	(TMV	like)
THUMP	PF02926.12	gi|292655267|ref|YP_003535164.1|	-	0.064	13.1	0.0	0.071	12.9	0.0	1.1	1	0	0	1	1	1	0	THUMP	domain
OmpH	PF03938.9	gi|292655267|ref|YP_003535164.1|	-	0.082	12.8	0.2	0.089	12.7	0.2	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Peripla_BP_2	PF01497.13	gi|292655268|ref|YP_003535165.1|	-	7.4e-30	103.8	0.1	1.2e-29	103.1	0.1	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_4	PF13407.1	gi|292655268|ref|YP_003535165.1|	-	0.019	14.3	2.1	0.029	13.7	0.1	2.2	2	1	0	2	2	2	0	Periplasmic	binding	protein	domain
Gram_pos_anchor	PF00746.16	gi|292655268|ref|YP_003535165.1|	-	0.077	12.8	0.2	0.077	12.8	0.1	2.0	2	0	0	2	2	2	0	Gram	positive	anchor
Mucin	PF01456.12	gi|292655268|ref|YP_003535165.1|	-	0.39	10.4	28.4	0.092	12.5	11.0	2.3	2	0	0	2	2	2	0	Mucin-like	glycoprotein
FecCD	PF01032.13	gi|292655269|ref|YP_003535166.1|	-	1.7e-89	299.7	34.1	4.2e-89	298.4	23.7	1.6	1	1	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.12	gi|292655269|ref|YP_003535166.1|	-	5.4e-05	22.6	21.9	0.0002	20.7	15.1	1.9	1	1	1	2	2	2	1	ABC	3	transport	family
DUF2781	PF10914.3	gi|292655269|ref|YP_003535166.1|	-	0.12	12.1	1.8	0.53	10.0	0.1	2.6	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2781)
ABC_tran	PF00005.22	gi|292655270|ref|YP_003535167.1|	-	4.5e-30	104.7	0.0	7.2e-30	104.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655270|ref|YP_003535167.1|	-	4.4e-09	36.7	0.0	0.00019	21.5	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|292655270|ref|YP_003535167.1|	-	2.1e-05	24.5	1.0	0.00015	21.7	0.1	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|292655270|ref|YP_003535167.1|	-	0.00022	21.5	0.0	0.00031	21.1	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655270|ref|YP_003535167.1|	-	0.0008	18.7	0.1	0.017	14.3	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292655270|ref|YP_003535167.1|	-	0.0033	16.8	0.1	0.0072	15.8	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.7	gi|292655270|ref|YP_003535167.1|	-	0.005	15.9	0.0	0.0094	15.0	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
ArgK	PF03308.11	gi|292655270|ref|YP_003535167.1|	-	0.006	15.3	0.2	0.012	14.4	0.1	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_30	PF13604.1	gi|292655270|ref|YP_003535167.1|	-	0.0097	15.5	0.2	0.0097	15.5	0.2	2.0	2	1	0	2	2	1	1	AAA	domain
NACHT	PF05729.7	gi|292655270|ref|YP_003535167.1|	-	0.01	15.5	0.1	0.2	11.2	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
AAA_22	PF13401.1	gi|292655270|ref|YP_003535167.1|	-	0.012	15.7	0.4	0.056	13.5	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|292655270|ref|YP_003535167.1|	-	0.012	15.4	0.2	0.026	14.4	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|292655270|ref|YP_003535167.1|	-	0.029	13.9	0.1	0.058	13.0	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|292655270|ref|YP_003535167.1|	-	0.038	13.9	2.2	0.062	13.2	0.2	2.4	2	2	1	3	3	3	0	AAA	domain
T2SE	PF00437.15	gi|292655270|ref|YP_003535167.1|	-	0.038	12.8	0.1	0.066	12.1	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF258	PF03193.11	gi|292655270|ref|YP_003535167.1|	-	0.042	13.0	0.0	0.068	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|292655270|ref|YP_003535167.1|	-	0.046	14.5	0.0	0.27	12.0	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|292655270|ref|YP_003535167.1|	-	0.07	12.1	0.0	1.7	7.6	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.14	gi|292655270|ref|YP_003535167.1|	-	0.07	12.5	0.1	0.15	11.5	0.1	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
CBS	PF00571.23	gi|292655270|ref|YP_003535167.1|	-	0.081	12.7	0.1	0.29	10.9	0.0	2.0	1	0	0	1	1	1	0	CBS	domain
DUF3584	PF12128.3	gi|292655270|ref|YP_003535167.1|	-	0.37	8.0	0.3	0.49	7.6	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Tubulin	PF00091.20	gi|292655271|ref|YP_003535168.1|	-	1.9e-24	86.7	0.0	4.6e-24	85.4	0.0	1.6	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
UPF0278	PF08745.6	gi|292655272|ref|YP_003535169.1|	-	4.3e-75	251.5	0.2	4.9e-75	251.3	0.1	1.0	1	0	0	1	1	1	1	UPF0278	family
HTH_20	PF12840.2	gi|292655274|ref|YP_003535171.1|	-	1.9e-09	37.2	0.3	2.7e-09	36.6	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292655274|ref|YP_003535171.1|	-	4.7e-07	29.2	0.5	1.2e-06	27.9	0.1	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655274|ref|YP_003535171.1|	-	0.00047	19.7	0.1	0.00058	19.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|292655274|ref|YP_003535171.1|	-	0.00086	18.9	0.0	0.0014	18.3	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|292655274|ref|YP_003535171.1|	-	0.004	16.7	0.0	0.0061	16.1	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Amidohydro_4	PF13147.1	gi|292655274|ref|YP_003535171.1|	-	0.01	15.8	0.0	0.011	15.8	0.0	1.0	1	0	0	1	1	1	0	Amidohydrolase
HTH_24	PF13412.1	gi|292655274|ref|YP_003535171.1|	-	0.011	15.0	0.0	0.019	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PTR	PF12789.2	gi|292655274|ref|YP_003535171.1|	-	0.023	14.5	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Phage	tail	repeat	like
HTH_AsnC-type	PF13404.1	gi|292655274|ref|YP_003535171.1|	-	0.062	12.8	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
FUR	PF01475.14	gi|292655274|ref|YP_003535171.1|	-	0.068	13.0	0.0	0.09	12.7	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_10	PF04967.7	gi|292655275|ref|YP_003535172.1|	-	1.8e-21	75.4	0.0	2.7e-21	74.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|292655275|ref|YP_003535172.1|	-	0.01	15.1	0.1	0.031	13.5	0.1	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
GerE	PF00196.14	gi|292655275|ref|YP_003535172.1|	-	0.011	15.0	0.2	0.88	8.9	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
LexA_DNA_bind	PF01726.11	gi|292655275|ref|YP_003535172.1|	-	0.046	13.2	0.2	0.22	11.1	0.1	2.0	1	1	0	1	1	1	0	LexA	DNA	binding	domain
HTH_5	PF01022.15	gi|292655275|ref|YP_003535172.1|	-	0.14	11.8	0.0	0.35	10.5	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CpXC	PF14353.1	gi|292655276|ref|YP_003535173.1|	-	0.0012	18.8	0.1	0.0012	18.7	0.1	1.0	1	0	0	1	1	1	1	CpXC	protein
zinc_ribbon_4	PF13717.1	gi|292655276|ref|YP_003535173.1|	-	0.0068	16.0	0.6	0.0087	15.7	0.4	1.3	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292655276|ref|YP_003535173.1|	-	0.0081	15.7	0.5	0.0097	15.4	0.3	1.3	1	1	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|292655276|ref|YP_003535173.1|	-	0.02	14.1	0.1	0.032	13.4	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292655276|ref|YP_003535173.1|	-	0.024	14.4	0.6	0.038	13.8	0.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|292655276|ref|YP_003535173.1|	-	0.03	13.9	0.4	0.038	13.6	0.3	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|292655276|ref|YP_003535173.1|	-	0.043	13.7	0.5	0.049	13.6	0.4	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-HIT	PF04438.11	gi|292655276|ref|YP_003535173.1|	-	0.05	13.2	1.3	0.43	10.2	0.1	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_2	PF13240.1	gi|292655276|ref|YP_003535173.1|	-	0.066	12.7	0.4	0.066	12.7	0.3	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|292655276|ref|YP_003535173.1|	-	0.12	12.0	0.5	0.18	11.5	0.3	1.3	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.7	gi|292655276|ref|YP_003535173.1|	-	0.13	11.6	3.3	0.24	10.7	2.3	1.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
Copper-bind	PF00127.15	gi|292655277|ref|YP_003535174.1|	-	2.5e-16	59.6	0.3	7.6e-16	58.1	0.2	1.7	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|292655277|ref|YP_003535174.1|	-	0.00073	19.3	0.0	0.00093	19.0	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.4	gi|292655277|ref|YP_003535174.1|	-	0.0017	18.2	1.9	0.0017	18.2	1.3	2.7	2	1	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PaaB	PF06243.6	gi|292655278|ref|YP_003535175.1|	-	2.1e-12	46.9	0.0	2.3e-12	46.8	0.0	1.1	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
Nitr_red_alph_N	PF14710.1	gi|292655278|ref|YP_003535175.1|	-	0.14	12.4	0.3	0.25	11.6	0.2	1.4	1	0	0	1	1	1	0	Respiratory	nitrate	reductase	alpha	N-terminal
Radical_SAM	PF04055.16	gi|292655279|ref|YP_003535176.1|	-	2.3e-23	83.1	0.0	3.8e-22	79.2	0.0	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|292655279|ref|YP_003535176.1|	-	1.7e-12	47.6	0.0	4e-12	46.4	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|292655279|ref|YP_003535176.1|	-	1e-10	41.6	0.0	7.9e-10	38.7	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
DUF3995	PF13160.1	gi|292655280|ref|YP_003535177.1|	-	0.08	13.0	1.3	0.082	12.9	0.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
DUF443	PF04276.7	gi|292655280|ref|YP_003535177.1|	-	0.11	11.8	0.2	0.12	11.8	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF443)
DUF2583	PF10762.4	gi|292655280|ref|YP_003535177.1|	-	0.17	12.0	1.9	0.21	11.7	1.3	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2583)
TcpE	PF12648.2	gi|292655280|ref|YP_003535177.1|	-	0.19	11.8	1.2	0.2	11.7	0.8	1.0	1	0	0	1	1	1	0	TcpE	family
Pyr_redox_2	PF07992.9	gi|292655281|ref|YP_003535178.1|	-	1.2e-24	87.3	0.0	2.4e-24	86.3	0.0	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292655281|ref|YP_003535178.1|	-	1.1e-16	61.0	0.2	2.2e-14	53.6	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655281|ref|YP_003535178.1|	-	7.6e-12	45.7	0.0	1.4e-10	41.5	0.0	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292655281|ref|YP_003535178.1|	-	7e-07	28.4	0.2	0.013	14.4	0.0	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|292655281|ref|YP_003535178.1|	-	0.0005	20.0	0.0	0.0016	18.4	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|292655281|ref|YP_003535178.1|	-	0.00087	17.8	0.2	3.1	6.1	0.0	3.5	3	1	1	4	4	4	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|292655281|ref|YP_003535178.1|	-	0.0014	17.5	5.6	0.039	12.7	0.0	2.9	2	1	1	3	3	3	2	FAD	binding	domain
GIDA	PF01134.17	gi|292655281|ref|YP_003535178.1|	-	0.0069	15.2	0.1	26	3.5	0.0	3.8	4	0	0	4	4	4	0	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|292655281|ref|YP_003535178.1|	-	0.0076	16.4	0.0	0.032	14.5	0.0	2.0	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Trp_halogenase	PF04820.9	gi|292655281|ref|YP_003535178.1|	-	0.065	11.8	0.0	3	6.3	0.0	2.7	3	0	0	3	3	3	0	Tryptophan	halogenase
K_oxygenase	PF13434.1	gi|292655281|ref|YP_003535178.1|	-	0.097	11.5	0.0	0.24	10.2	0.0	1.6	1	1	0	1	1	1	0	L-lysine	6-monooxygenase	(NADPH-requiring)
FMO-like	PF00743.14	gi|292655281|ref|YP_003535178.1|	-	0.19	9.8	0.0	4	5.5	0.0	2.0	2	0	0	2	2	2	0	Flavin-binding	monooxygenase-like
DUF357	PF04010.8	gi|292655282|ref|YP_003535179.1|	-	7e-28	96.1	0.7	8.1e-28	95.9	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
tRNA-synt_1e	PF01406.14	gi|292655283|ref|YP_003535180.1|	-	6.8e-104	347.2	0.1	4.4e-103	344.5	0.0	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.6	gi|292655283|ref|YP_003535180.1|	-	3.8e-12	46.2	0.6	9.3e-12	45.0	0.4	1.7	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1g	PF09334.6	gi|292655283|ref|YP_003535180.1|	-	2.1e-09	36.5	0.1	0.00018	20.3	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.13	gi|292655283|ref|YP_003535180.1|	-	1.6e-07	30.3	0.0	0.00037	19.2	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.17	gi|292655283|ref|YP_003535180.1|	-	1.5e-05	23.2	0.1	0.0001	20.4	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
FTO_CTD	PF12934.2	gi|292655283|ref|YP_003535180.1|	-	0.0092	15.5	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	1	FTO	C-terminal	domain
UVR	PF02151.14	gi|292655283|ref|YP_003535180.1|	-	0.035	13.6	0.1	0.34	10.4	0.0	2.7	2	0	0	2	2	2	0	UvrB/uvrC	motif
tRNA-synt_1d	PF00750.14	gi|292655283|ref|YP_003535180.1|	-	0.073	11.8	1.0	1.5	7.5	0.0	2.7	3	1	0	3	3	3	0	tRNA	synthetases	class	I	(R)
Usp	PF00582.21	gi|292655283|ref|YP_003535180.1|	-	4.1	7.5	6.2	0.55	10.4	0.3	2.4	3	0	0	3	3	3	0	Universal	stress	protein	family
MCPsignal	PF00015.16	gi|292655284|ref|YP_003535181.1|	-	1.6e-49	168.3	41.5	7.7e-47	159.5	20.0	2.5	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.3	gi|292655284|ref|YP_003535181.1|	-	2.7e-19	69.3	0.0	3.9e-18	65.6	0.0	2.5	3	0	0	3	3	2	1	Protoglobin
COG5	PF10392.4	gi|292655284|ref|YP_003535181.1|	-	0.00046	20.1	6.4	0.46	10.4	0.0	3.7	3	1	1	4	4	4	1	Golgi	transport	complex	subunit	5
IncA	PF04156.9	gi|292655284|ref|YP_003535181.1|	-	0.0036	16.9	14.2	0.011	15.4	2.1	3.3	2	2	1	3	3	3	1	IncA	protein
BLOC1_2	PF10046.4	gi|292655284|ref|YP_003535181.1|	-	0.0056	16.7	18.6	0.067	13.3	0.7	4.4	2	2	1	4	4	4	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Syntaxin	PF00804.20	gi|292655284|ref|YP_003535181.1|	-	0.0057	16.7	19.4	0.69	10.1	1.9	4.4	1	1	1	2	2	2	1	Syntaxin
Baculo_PEP_C	PF04513.7	gi|292655284|ref|YP_003535181.1|	-	0.017	14.9	17.6	0.19	11.5	1.3	3.8	1	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
SNARE	PF05739.14	gi|292655284|ref|YP_003535181.1|	-	0.027	14.1	0.8	0.027	14.1	0.5	5.9	5	1	2	7	7	5	0	SNARE	domain
DUF489	PF04356.7	gi|292655284|ref|YP_003535181.1|	-	0.028	14.0	1.2	0.19	11.3	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
Laminin_II	PF06009.7	gi|292655284|ref|YP_003535181.1|	-	0.033	13.9	25.7	0.48	10.1	1.0	4.8	2	2	3	5	5	5	0	Laminin	Domain	II
DUF4200	PF13863.1	gi|292655284|ref|YP_003535181.1|	-	0.035	14.0	5.5	2.6	8.0	0.3	3.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF1664	PF07889.7	gi|292655284|ref|YP_003535181.1|	-	0.039	13.7	18.7	0.14	11.9	1.1	4.1	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
DUF972	PF06156.8	gi|292655284|ref|YP_003535181.1|	-	0.047	14.0	4.7	3.4	8.0	0.0	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF972)
FlgN	PF05130.7	gi|292655284|ref|YP_003535181.1|	-	0.053	13.7	0.6	0.053	13.7	0.4	3.5	1	1	2	3	3	3	0	FlgN	protein
DUF948	PF06103.6	gi|292655284|ref|YP_003535181.1|	-	0.055	13.3	19.6	0.38	10.6	1.0	4.1	3	1	1	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
AAA_13	PF13166.1	gi|292655284|ref|YP_003535181.1|	-	0.064	11.7	15.0	0.025	13.0	4.2	2.1	1	1	2	3	3	3	0	AAA	domain
FH2	PF02181.18	gi|292655284|ref|YP_003535181.1|	-	0.074	11.9	4.9	0.025	13.4	0.9	2.1	2	0	0	2	2	2	0	Formin	Homology	2	Domain
Fib_alpha	PF08702.5	gi|292655284|ref|YP_003535181.1|	-	0.11	12.5	6.4	0.54	10.3	0.6	3.5	2	2	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
Reo_sigmaC	PF04582.7	gi|292655284|ref|YP_003535181.1|	-	0.13	11.3	24.3	0.14	11.2	7.6	2.6	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
NPV_P10	PF05531.7	gi|292655284|ref|YP_003535181.1|	-	0.19	12.0	21.8	3.4	7.9	1.9	5.0	3	1	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.6	gi|292655284|ref|YP_003535181.1|	-	0.32	9.6	13.5	0.087	11.4	3.2	2.4	2	1	0	2	2	2	0	Spc7	kinetochore	protein
IFT57	PF10498.4	gi|292655284|ref|YP_003535181.1|	-	0.43	9.2	12.9	0.42	9.3	2.3	2.5	2	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
TPR_MLP1_2	PF07926.7	gi|292655284|ref|YP_003535181.1|	-	0.69	9.6	18.2	0.28	10.9	1.0	3.3	2	1	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
LOH1CR12	PF10158.4	gi|292655284|ref|YP_003535181.1|	-	1.1	9.1	3.1	11	5.8	0.1	2.9	2	1	0	2	2	2	0	Tumour	suppressor	protein
Myosin_tail_1	PF01576.14	gi|292655284|ref|YP_003535181.1|	-	1.5	6.4	26.0	3.9	5.0	18.0	1.7	1	1	0	1	1	1	0	Myosin	tail
Seryl_tRNA_N	PF02403.17	gi|292655284|ref|YP_003535181.1|	-	2	8.5	18.5	1.6	8.7	1.3	4.3	1	1	4	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2951	PF11166.3	gi|292655284|ref|YP_003535181.1|	-	2.1	8.2	4.8	2.5	7.9	0.2	3.0	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2951)
RmuC	PF02646.11	gi|292655284|ref|YP_003535181.1|	-	2.1	7.0	7.4	1.9	7.2	0.1	3.1	2	2	1	3	3	3	0	RmuC	family
FlaC_arch	PF05377.6	gi|292655284|ref|YP_003535181.1|	-	2.4	8.1	13.2	5.5	6.9	0.1	4.8	4	1	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Muted	PF14942.1	gi|292655284|ref|YP_003535181.1|	-	2.5	7.9	12.3	2.3	8.0	2.0	2.8	2	1	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Spectrin	PF00435.16	gi|292655284|ref|YP_003535181.1|	-	2.6	8.3	10.8	14	6.0	0.4	3.7	2	2	2	4	4	3	0	Spectrin	repeat
CorA	PF01544.13	gi|292655284|ref|YP_003535181.1|	-	2.6	6.9	11.9	0.1	11.6	2.0	2.5	2	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Atg14	PF10186.4	gi|292655284|ref|YP_003535181.1|	-	3	6.6	4.7	3.5	6.4	0.1	2.5	1	1	1	3	3	3	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Syntaxin-6_N	PF09177.6	gi|292655284|ref|YP_003535181.1|	-	3.2	8.2	21.4	2.3	8.6	2.4	4.6	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
WXG100	PF06013.7	gi|292655284|ref|YP_003535181.1|	-	3.3	7.7	17.7	1.8	8.6	0.9	5.5	3	2	3	6	6	5	0	Proteins	of	100	residues	with	WXG
Sec5	PF15469.1	gi|292655284|ref|YP_003535181.1|	-	3.5	7.3	4.8	28	4.3	0.2	2.9	1	1	2	3	3	3	0	Exocyst	complex	component	Sec5
LXG	PF04740.7	gi|292655284|ref|YP_003535181.1|	-	4.4	7.0	19.6	0.15	11.7	0.9	3.4	2	2	1	3	3	3	0	LXG	domain	of	WXG	superfamily
Prominin	PF05478.6	gi|292655284|ref|YP_003535181.1|	-	4.4	4.7	10.7	3.4	5.0	3.2	2.1	1	1	1	2	2	2	0	Prominin
CesA	PF11439.3	gi|292655284|ref|YP_003535181.1|	-	7.8	6.4	7.5	14	5.7	0.2	3.5	1	1	3	4	4	4	0	Type	III	secretion	system	filament	chaperone	CesA
V_ATPase_I	PF01496.14	gi|292655284|ref|YP_003535181.1|	-	8.2	4.1	12.0	3.9	5.2	4.3	2.1	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
APG17	PF04108.7	gi|292655284|ref|YP_003535181.1|	-	8.2	5.1	12.2	7.7	5.2	5.0	2.5	1	1	1	2	2	2	0	Autophagy	protein	Apg17
CbiX	PF01903.12	gi|292655286|ref|YP_003535183.1|	-	1.6e-43	147.1	0.2	1.9e-22	79.3	0.0	2.3	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.6	gi|292655286|ref|YP_003535183.1|	-	7.8e-09	35.0	0.1	0.0011	18.0	0.1	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Fumerase_C	PF05683.7	gi|292655286|ref|YP_003535183.1|	-	0.028	13.5	0.0	1.7	7.7	0.0	2.2	2	0	0	2	2	2	0	Fumarase	C-terminus
Trm112p	PF03966.11	gi|292655289|ref|YP_003535186.1|	-	0.00012	22.3	0.1	0.00032	21.0	0.1	1.6	1	1	0	1	1	1	1	Trm112p-like	protein
Adenylsucc_synt	PF00709.16	gi|292655290|ref|YP_003535187.1|	-	1.3e-149	498.4	0.0	1.5e-149	498.2	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
HTH_12	PF08461.5	gi|292655291|ref|YP_003535188.1|	-	0.0014	18.2	0.1	0.0031	17.1	0.0	1.7	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_24	PF13412.1	gi|292655291|ref|YP_003535188.1|	-	0.0085	15.4	0.0	0.016	14.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292655291|ref|YP_003535188.1|	-	0.022	14.4	0.3	0.031	13.9	0.1	1.5	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MotA_activ	PF09114.5	gi|292655291|ref|YP_003535188.1|	-	0.022	14.4	0.1	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Phage_rep_org_N	PF09681.5	gi|292655291|ref|YP_003535188.1|	-	0.029	13.9	0.0	0.05	13.1	0.0	1.5	1	1	1	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Pup	PF05639.6	gi|292655291|ref|YP_003535188.1|	-	0.037	14.5	0.2	0.058	13.8	0.2	1.4	1	0	0	1	1	1	0	Pup-like	protein
HTH_5	PF01022.15	gi|292655291|ref|YP_003535188.1|	-	0.074	12.7	0.2	0.17	11.5	0.1	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292655291|ref|YP_003535188.1|	-	0.097	12.4	0.6	0.32	10.8	0.0	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_15	PF12324.3	gi|292655291|ref|YP_003535188.1|	-	0.11	12.2	0.1	0.25	11.0	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
Ribosomal_S19e	PF01090.14	gi|292655291|ref|YP_003535188.1|	-	0.13	11.7	0.0	0.25	10.7	0.0	1.5	1	1	1	2	2	2	0	Ribosomal	protein	S19e
Filament	PF00038.16	gi|292655292|ref|YP_003535189.1|	-	4.5e-06	26.3	4.6	6.6e-06	25.8	3.2	1.2	1	0	0	1	1	1	1	Intermediate	filament	protein
CENP-F_leu_zip	PF10473.4	gi|292655292|ref|YP_003535189.1|	-	4.3e-05	23.3	5.4	7.1e-05	22.6	3.7	1.2	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cep57_CLD_2	PF14197.1	gi|292655292|ref|YP_003535189.1|	-	0.00042	20.1	13.7	0.00079	19.3	9.5	1.4	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	PPC89
Tropomyosin_1	PF12718.2	gi|292655292|ref|YP_003535189.1|	-	0.00042	20.1	10.2	0.00075	19.3	7.1	1.3	1	0	0	1	1	1	1	Tropomyosin	like
bZIP_1	PF00170.16	gi|292655292|ref|YP_003535189.1|	-	0.00099	19.0	9.6	0.1	12.5	2.5	2.4	1	1	1	2	2	2	2	bZIP	transcription	factor
IncA	PF04156.9	gi|292655292|ref|YP_003535189.1|	-	0.0034	17.0	8.2	0.0053	16.3	5.7	1.2	1	0	0	1	1	1	1	IncA	protein
HALZ	PF02183.13	gi|292655292|ref|YP_003535189.1|	-	0.0063	16.2	8.7	0.043	13.5	3.1	2.3	1	1	1	2	2	2	1	Homeobox	associated	leucine	zipper
CALCOCO1	PF07888.6	gi|292655292|ref|YP_003535189.1|	-	0.0088	14.3	4.5	0.015	13.6	3.1	1.3	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
DUF1192	PF06698.6	gi|292655292|ref|YP_003535189.1|	-	0.01	15.5	9.3	0.058	13.2	1.2	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF848	PF05852.6	gi|292655292|ref|YP_003535189.1|	-	0.019	14.8	3.5	0.037	13.8	2.4	1.4	1	0	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Mnd1	PF03962.10	gi|292655292|ref|YP_003535189.1|	-	0.029	14.0	4.8	0.055	13.1	3.4	1.3	1	0	0	1	1	1	0	Mnd1	family
HOOK	PF05622.7	gi|292655292|ref|YP_003535189.1|	-	0.034	11.9	10.6	0.025	12.3	5.3	1.8	1	1	1	2	2	2	0	HOOK	protein
Macoilin	PF09726.4	gi|292655292|ref|YP_003535189.1|	-	0.037	12.3	3.5	0.054	11.7	2.4	1.3	1	0	0	1	1	1	0	Transmembrane	protein
TBPIP	PF07106.8	gi|292655292|ref|YP_003535189.1|	-	0.038	13.5	1.5	0.064	12.8	1.0	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
bZIP_2	PF07716.10	gi|292655292|ref|YP_003535189.1|	-	0.056	13.2	10.8	0.091	12.5	1.5	2.4	1	1	1	2	2	2	0	Basic	region	leucine	zipper
Fmp27_WPPW	PF10359.4	gi|292655292|ref|YP_003535189.1|	-	0.17	10.2	3.8	0.27	9.5	2.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Spc7	PF08317.6	gi|292655292|ref|YP_003535189.1|	-	0.18	10.4	2.0	0.26	9.9	1.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
APG6	PF04111.7	gi|292655292|ref|YP_003535189.1|	-	0.28	10.1	5.9	0.43	9.5	4.1	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
EMP24_GP25L	PF01105.19	gi|292655292|ref|YP_003535189.1|	-	0.33	10.6	0.9	0.6	9.8	0.6	1.4	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Cast	PF10174.4	gi|292655292|ref|YP_003535189.1|	-	0.36	8.8	15.9	0.48	8.4	11.0	1.1	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
DUF1204	PF06721.6	gi|292655292|ref|YP_003535189.1|	-	0.55	9.4	16.5	0.048	12.9	4.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1204)
DUF972	PF06156.8	gi|292655292|ref|YP_003535189.1|	-	0.8	10.0	4.7	11	6.4	3.2	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Spc24	PF08286.6	gi|292655292|ref|YP_003535189.1|	-	0.81	9.3	2.8	59	3.3	2.6	2.8	2	1	0	2	2	2	0	Spc24	subunit	of	Ndc80
V_ATPase_I	PF01496.14	gi|292655292|ref|YP_003535189.1|	-	0.83	7.4	3.6	1.1	6.9	2.5	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF904	PF06005.7	gi|292655292|ref|YP_003535189.1|	-	0.86	9.9	9.8	2.2	8.6	4.9	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
DivIC	PF04977.10	gi|292655292|ref|YP_003535189.1|	-	1.5	8.3	8.7	4.4	6.8	2.4	2.3	1	1	1	2	2	2	0	Septum	formation	initiator
GAS	PF13851.1	gi|292655292|ref|YP_003535189.1|	-	1.9	7.6	6.7	0.34	10.0	2.2	1.5	2	0	0	2	2	1	0	Growth-arrest	specific	micro-tubule	binding
TMF_DNA_bd	PF12329.3	gi|292655292|ref|YP_003535189.1|	-	2	8.2	14.3	0.22	11.3	6.9	1.6	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
SPX	PF03105.14	gi|292655292|ref|YP_003535189.1|	-	2	8.1	9.3	2	8.1	5.8	1.4	1	1	0	1	1	1	0	SPX	domain
Atg14	PF10186.4	gi|292655292|ref|YP_003535189.1|	-	2.2	7.1	6.2	3.1	6.6	4.3	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4337	PF14235.1	gi|292655292|ref|YP_003535189.1|	-	2.3	8.0	5.4	4.5	7.0	3.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
DUF4407	PF14362.1	gi|292655292|ref|YP_003535189.1|	-	2.6	6.9	7.0	5.5	5.8	4.9	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
OmpH	PF03938.9	gi|292655292|ref|YP_003535189.1|	-	3.8	7.4	7.0	6.9	6.5	4.8	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Prefoldin_2	PF01920.15	gi|292655292|ref|YP_003535189.1|	-	6.2	6.6	7.3	22	4.8	0.4	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
Methyltransf_18	PF12847.2	gi|292655293|ref|YP_003535190.1|	-	1.8e-06	28.4	0.0	4.1e-06	27.3	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655293|ref|YP_003535190.1|	-	8.7e-05	22.9	0.0	0.00018	21.9	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655293|ref|YP_003535190.1|	-	0.00037	20.2	0.0	0.0024	17.5	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_28	PF02636.12	gi|292655293|ref|YP_003535190.1|	-	0.00081	18.8	0.0	0.00094	18.6	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_31	PF13847.1	gi|292655293|ref|YP_003535190.1|	-	0.016	14.7	0.0	0.099	12.2	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655293|ref|YP_003535190.1|	-	0.034	14.5	0.0	0.058	13.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655293|ref|YP_003535190.1|	-	0.073	13.5	0.0	0.2	12.1	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
CDP-OH_P_transf	PF01066.16	gi|292655294|ref|YP_003535191.1|	-	1.6e-11	44.4	3.4	1.6e-11	44.4	2.4	2.0	2	0	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
TrkA_N	PF02254.13	gi|292655295|ref|YP_003535192.1|	-	1.2e-40	138.1	7.1	1e-20	73.8	0.3	3.0	3	1	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|292655295|ref|YP_003535192.1|	-	1.6e-23	82.0	1.1	8e-11	41.3	0.1	2.9	2	0	0	2	2	2	2	TrkA-C	domain
ThiF	PF00899.16	gi|292655295|ref|YP_003535192.1|	-	0.0007	19.4	1.5	0.0014	18.4	0.1	2.3	3	0	0	3	3	3	1	ThiF	family
FAD_binding_3	PF01494.14	gi|292655295|ref|YP_003535192.1|	-	0.00074	18.6	0.2	0.0011	18.0	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|292655295|ref|YP_003535192.1|	-	0.0012	19.1	1.1	0.059	13.6	0.1	2.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Ion_trans_2	PF07885.11	gi|292655295|ref|YP_003535192.1|	-	0.0027	17.3	4.1	0.0063	16.2	2.8	1.6	1	0	0	1	1	1	1	Ion	channel
2-Hacid_dh_C	PF02826.14	gi|292655295|ref|YP_003535192.1|	-	0.0091	15.1	0.1	0.026	13.7	0.0	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|292655295|ref|YP_003535192.1|	-	0.026	14.2	0.6	0.076	12.6	0.4	1.8	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|292655295|ref|YP_003535192.1|	-	0.1	12.1	1.5	0.22	11.0	0.1	2.0	2	1	1	3	3	3	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
DUF1970	PF09301.5	gi|292655295|ref|YP_003535192.1|	-	0.11	12.5	0.0	2.9	7.9	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1970)
Toprim_3	PF13362.1	gi|292655295|ref|YP_003535192.1|	-	3.6	7.9	7.9	11	6.2	1.5	3.9	2	2	2	4	4	4	0	Toprim	domain
COX3	PF00510.13	gi|292655296|ref|YP_003535193.1|	-	6.6e-44	150.2	17.2	9.7e-44	149.7	11.9	1.2	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
zf-DHHC	PF01529.15	gi|292655296|ref|YP_003535193.1|	-	3.1	7.1	5.3	0.69	9.2	1.0	1.9	2	1	0	2	2	2	0	DHHC	palmitoyltransferase
SQS_PSY	PF00494.14	gi|292655297|ref|YP_003535194.1|	-	1.9e-49	168.3	1.1	3e-49	167.7	0.8	1.3	1	0	0	1	1	1	1	Squalene/phytoene	synthase
Acyl-CoA_dh_1	PF00441.19	gi|292655298|ref|YP_003535195.1|	-	6e-48	162.7	0.4	2.1e-47	160.9	0.7	1.5	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|292655298|ref|YP_003535195.1|	-	9.3e-35	119.6	0.9	1.8e-34	118.7	0.2	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|292655298|ref|YP_003535195.1|	-	1.6e-21	76.9	1.4	2.5e-21	76.3	1.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|292655298|ref|YP_003535195.1|	-	3.8e-21	74.3	0.2	1.8e-20	72.1	0.1	2.1	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
PadR	PF03551.9	gi|292655299|ref|YP_003535196.1|	-	0.00087	19.0	0.2	0.0013	18.4	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
SelB-wing_2	PF09106.6	gi|292655299|ref|YP_003535196.1|	-	0.037	13.9	0.2	0.076	12.9	0.0	1.7	2	0	0	2	2	2	0	Elongation	factor	SelB,	winged	helix
HTH_27	PF13463.1	gi|292655299|ref|YP_003535196.1|	-	0.06	13.6	0.1	0.081	13.2	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|292655299|ref|YP_003535196.1|	-	0.062	13.1	0.1	0.089	12.6	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|292655299|ref|YP_003535196.1|	-	0.1	12.6	0.0	0.21	11.6	0.0	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
CDP-OH_P_transf	PF01066.16	gi|292655301|ref|YP_003535198.1|	-	1.1e-07	32.0	16.6	9.6e-07	29.0	11.5	2.5	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
Copper-bind	PF00127.15	gi|292655302|ref|YP_003535199.1|	-	3.9e-18	65.4	0.0	7.5e-18	64.5	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|292655302|ref|YP_003535199.1|	-	3.5e-05	23.6	0.0	0.074	12.9	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.4	gi|292655302|ref|YP_003535199.1|	-	0.012	15.6	7.2	0.012	15.6	5.0	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292655302|ref|YP_003535199.1|	-	0.015	14.4	2.4	0.015	14.4	1.7	1.7	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Cu-oxidase_3	PF07732.10	gi|292655302|ref|YP_003535199.1|	-	0.14	11.8	0.2	0.77	9.5	0.1	2.1	1	1	0	1	1	1	0	Multicopper	oxidase
Ribosomal_S3Ae	PF01015.13	gi|292655303|ref|YP_003535200.1|	-	3.7e-63	212.3	0.3	4.5e-63	212.1	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
NAD_binding_3	PF03447.11	gi|292655303|ref|YP_003535200.1|	-	0.11	12.8	0.5	0.53	10.6	0.0	2.1	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
Pcc1	PF09341.5	gi|292655304|ref|YP_003535201.1|	-	0.0045	16.9	0.1	0.0072	16.3	0.0	1.4	1	1	0	1	1	1	1	Transcription	factor	Pcc1
Ribul_P_3_epim	PF00834.14	gi|292655304|ref|YP_003535201.1|	-	0.026	13.6	0.2	0.03	13.4	0.1	1.1	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
DUF4340	PF14238.1	gi|292655304|ref|YP_003535201.1|	-	0.1	12.3	0.2	0.11	12.2	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4340)
HTH_Tnp_1	PF01527.15	gi|292655305|ref|YP_003535202.1|	-	0.05	13.5	0.1	0.17	11.8	0.1	1.9	1	0	0	1	1	1	0	Transposase
Ribosomal_S15	PF00312.17	gi|292655306|ref|YP_003535203.1|	-	2.6e-24	84.8	0.6	4.4e-24	84.0	0.4	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S15
Ribosomal_S13_N	PF08069.7	gi|292655306|ref|YP_003535203.1|	-	8.5e-23	79.9	0.1	1.4e-22	79.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Y1_Tnp	PF01797.11	gi|292655307|ref|YP_003535204.1|	-	2e-37	127.7	0.0	2.2e-37	127.5	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF1628	PF07790.6	gi|292655310|ref|YP_003535207.1|	-	0.00025	21.7	0.6	0.0016	19.1	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
T2SF	PF00482.18	gi|292655314|ref|YP_003535211.1|	-	3.4e-25	88.3	9.5	1.6e-12	47.3	0.6	3.0	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF912	PF06024.7	gi|292655314|ref|YP_003535211.1|	-	0.26	11.3	0.9	4	7.5	0.2	2.5	2	0	0	2	2	2	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF912)
Nairovirus_M	PF07948.6	gi|292655314|ref|YP_003535211.1|	-	0.27	9.2	0.3	0.48	8.4	0.0	1.4	2	0	0	2	2	2	0	Nairovirus	M	polyprotein-like
T2SE	PF00437.15	gi|292655315|ref|YP_003535212.1|	-	3.6e-43	147.4	0.0	5.6e-43	146.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|292655315|ref|YP_003535212.1|	-	0.00035	20.0	0.1	0.00081	18.8	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
HAMP	PF00672.20	gi|292655315|ref|YP_003535212.1|	-	0.05	13.7	0.2	0.18	12.0	0.2	2.0	1	0	0	1	1	1	0	HAMP	domain
MttA_Hcf106	PF02416.11	gi|292655316|ref|YP_003535213.1|	-	9.7e-15	53.4	0.0	1.2e-14	53.1	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
AhpC-TSA	PF00578.16	gi|292655317|ref|YP_003535214.1|	-	1.8e-33	114.8	0.0	2.1e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|292655317|ref|YP_003535214.1|	-	2.8e-25	88.5	0.1	3.4e-25	88.2	0.1	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|292655317|ref|YP_003535214.1|	-	0.00069	19.5	0.1	0.069	13.0	0.0	2.1	1	1	0	2	2	2	2	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.7	gi|292655317|ref|YP_003535214.1|	-	0.067	12.6	0.0	0.085	12.2	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
DUF3103	PF11301.3	gi|292655317|ref|YP_003535214.1|	-	0.13	10.9	0.1	0.2	10.3	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3103)
HD	PF01966.17	gi|292655318|ref|YP_003535215.1|	-	2.1e-10	40.6	3.8	3.4e-10	39.9	2.6	1.4	1	0	0	1	1	1	1	HD	domain
MS_channel	PF00924.13	gi|292655319|ref|YP_003535216.1|	-	5.4e-51	172.8	0.6	5.4e-51	172.8	0.4	2.0	2	1	0	2	2	2	1	Mechanosensitive	ion	channel
NnrS	PF05940.7	gi|292655319|ref|YP_003535216.1|	-	0.019	13.8	2.4	0.026	13.4	1.7	1.1	1	0	0	1	1	1	0	NnrS	protein
NSP10	PF09401.5	gi|292655319|ref|YP_003535216.1|	-	0.077	12.7	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	RNA	synthesis	protein	NSP10
DUF1469	PF07332.6	gi|292655319|ref|YP_003535216.1|	-	2.5	7.8	11.9	0.047	13.4	2.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
CRS1_YhbY	PF01985.16	gi|292655320|ref|YP_003535217.1|	-	7.6e-18	64.3	0.1	8.2e-18	64.2	0.1	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Rpr2	PF04032.11	gi|292655321|ref|YP_003535218.1|	-	2.6e-16	59.2	0.0	2.9e-16	59.0	0.0	1.0	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF2917	PF11142.3	gi|292655321|ref|YP_003535218.1|	-	0.1	11.8	0.0	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2917)
zf-CDGSH	PF09360.5	gi|292655321|ref|YP_003535218.1|	-	0.13	12.0	0.2	0.13	12.0	0.1	1.5	2	0	0	2	2	2	0	Iron-binding	zinc	finger	CDGSH	type
Glycos_transf_1	PF00534.15	gi|292655322|ref|YP_003535219.1|	-	1.1e-18	67.2	0.0	6.2e-17	61.5	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|292655322|ref|YP_003535219.1|	-	2.3e-12	47.0	0.1	5e-12	45.9	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292655322|ref|YP_003535219.1|	-	6.1e-12	45.9	0.9	2.2e-11	44.1	0.6	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|292655322|ref|YP_003535219.1|	-	6.4e-12	45.7	0.0	2.8e-10	40.4	0.0	2.4	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|292655322|ref|YP_003535219.1|	-	2e-10	40.6	0.0	3.5e-10	39.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
PEP-utilisers_N	PF05524.8	gi|292655322|ref|YP_003535219.1|	-	0.044	13.5	0.3	3.2	7.5	0.0	2.3	1	1	1	2	2	2	0	PEP-utilising	enzyme,	N-terminal
Glycos_transf_1	PF00534.15	gi|292655323|ref|YP_003535220.1|	-	4.5e-30	104.3	0.0	9.7e-30	103.2	0.0	1.4	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292655323|ref|YP_003535220.1|	-	2.7e-19	69.8	8.2	7.2e-19	68.4	2.3	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|292655323|ref|YP_003535220.1|	-	1.2e-16	60.9	0.0	1.5e-16	60.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|292655323|ref|YP_003535220.1|	-	2.6e-15	56.7	0.2	1.2e-14	54.5	0.0	2.1	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|292655323|ref|YP_003535220.1|	-	5.4e-05	23.3	0.1	0.0002	21.5	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|292655323|ref|YP_003535220.1|	-	0.0036	17.1	0.0	0.0082	15.9	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Granin	PF01271.12	gi|292655324|ref|YP_003535221.1|	-	0.016	13.9	2.6	0.017	13.8	1.8	1.0	1	0	0	1	1	1	0	Granin	(chromogranin	or	secretogranin)
DUF4140	PF13600.1	gi|292655324|ref|YP_003535221.1|	-	2.4	8.6	5.4	0.8	10.1	0.3	2.0	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
NEMO	PF11577.3	gi|292655324|ref|YP_003535221.1|	-	4.3	7.1	12.4	13	5.5	5.6	2.1	2	0	0	2	2	2	0	NF-kappa-B	essential	modulator	NEMO
DUF2797	PF10977.3	gi|292655325|ref|YP_003535222.1|	-	9e-51	172.7	4.8	1.8e-49	168.4	3.3	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
Epimerase	PF01370.16	gi|292655326|ref|YP_003535223.1|	-	2.1e-51	174.6	0.0	2.5e-51	174.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|292655326|ref|YP_003535223.1|	-	5.7e-22	77.9	0.0	7.1e-22	77.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|292655326|ref|YP_003535223.1|	-	2.3e-12	46.1	0.0	3.4e-12	45.6	0.0	1.4	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.1	gi|292655326|ref|YP_003535223.1|	-	3.3e-12	46.7	0.0	4.9e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|292655326|ref|YP_003535223.1|	-	2.4e-11	43.0	0.0	2.9e-10	39.5	0.0	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|292655326|ref|YP_003535223.1|	-	1.2e-10	40.7	0.0	3.8e-09	35.8	0.0	2.2	1	1	1	2	2	2	1	Male	sterility	protein
adh_short	PF00106.20	gi|292655326|ref|YP_003535223.1|	-	1.1e-06	28.6	0.5	2.3e-06	27.6	0.0	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
TrkA_N	PF02254.13	gi|292655326|ref|YP_003535223.1|	-	1.1e-05	25.4	0.1	2.2e-05	24.4	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NmrA	PF05368.8	gi|292655326|ref|YP_003535223.1|	-	2.8e-05	23.5	0.0	0.0018	17.5	0.0	2.1	2	0	0	2	2	2	1	NmrA-like	family
Ldh_1_N	PF00056.18	gi|292655326|ref|YP_003535223.1|	-	0.0002	21.1	0.0	0.00032	20.5	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|292655326|ref|YP_003535223.1|	-	0.008	15.8	1.6	0.062	12.9	1.1	2.2	1	1	0	1	1	1	1	KR	domain
Trm56	PF01994.11	gi|292655327|ref|YP_003535224.1|	-	1.2e-47	160.6	0.0	1.6e-47	160.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SIS_2	PF13580.1	gi|292655327|ref|YP_003535224.1|	-	0.081	12.6	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	SIS	domain
TFIIE_alpha	PF02002.12	gi|292655328|ref|YP_003535225.1|	-	6e-21	73.9	0.5	1.3e-20	72.8	0.1	1.7	2	0	0	2	2	2	1	TFIIE	alpha	subunit
Sigma70_r3	PF04539.11	gi|292655328|ref|YP_003535225.1|	-	0.011	15.5	0.1	0.028	14.3	0.1	1.6	1	0	0	1	1	1	0	Sigma-70	region	3
DUF3618	PF12277.3	gi|292655328|ref|YP_003535225.1|	-	0.019	14.9	3.7	2.2	8.3	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
HTH_20	PF12840.2	gi|292655328|ref|YP_003535225.1|	-	0.12	12.2	0.3	0.36	10.6	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF2110	PF09883.4	gi|292655329|ref|YP_003535226.1|	-	2.5e-92	308.5	0.0	2.9e-92	308.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
MoCF_biosynth	PF00994.19	gi|292655331|ref|YP_003535228.1|	-	5.6e-35	119.8	0.3	9.3e-35	119.1	0.2	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Glyco_trans_4_4	PF13579.1	gi|292655331|ref|YP_003535228.1|	-	0.019	15.1	2.3	0.19	11.8	1.6	2.1	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DUF4350	PF14258.1	gi|292655331|ref|YP_003535228.1|	-	0.082	13.1	0.0	0.28	11.4	0.0	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4350)
COX8	PF02285.10	gi|292655332|ref|YP_003535229.1|	-	0.55	9.8	2.0	0.77	9.3	1.4	1.4	1	1	0	1	1	1	0	Cytochrome	oxidase	c	subunit	VIII
NAD_kinase	PF01513.16	gi|292655333|ref|YP_003535230.1|	-	1.5e-48	165.0	0.1	1.8e-48	164.7	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|292655333|ref|YP_003535230.1|	-	6.3e-06	25.6	2.0	3.2e-05	23.3	0.1	2.8	3	0	0	3	3	3	1	Diacylglycerol	kinase	catalytic	domain
CMD	PF02627.15	gi|292655334|ref|YP_003535231.1|	-	1.7e-14	53.3	0.0	2.5e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
Thioredoxin_2	PF13098.1	gi|292655334|ref|YP_003535231.1|	-	0.098	12.8	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
PhoU	PF01895.14	gi|292655335|ref|YP_003535232.1|	-	5.7e-13	49.1	4.5	5.6e-10	39.5	0.0	2.4	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|292655335|ref|YP_003535232.1|	-	6.1e-09	35.4	0.0	1.2e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
TadE	PF07811.7	gi|292655336|ref|YP_003535233.1|	-	3.6	7.5	7.7	0.69	9.8	1.8	2.4	2	0	0	2	2	2	0	TadE-like	protein
LEA_2	PF03168.8	gi|292655338|ref|YP_003535235.1|	-	4.2e-16	59.1	0.0	2.6e-09	37.3	0.0	2.4	2	0	0	2	2	2	2	Late	embryogenesis	abundant	protein
MLTD_N	PF06474.7	gi|292655339|ref|YP_003535236.1|	-	8.3	6.6	6.8	14	5.9	0.4	2.2	2	0	0	2	2	2	0	MltD	lipid	attachment	motif
FaeA	PF04703.7	gi|292655340|ref|YP_003535237.1|	-	0.00054	20.0	0.1	0.00064	19.8	0.1	1.1	1	0	0	1	1	1	1	FaeA-like	protein
LexA_DNA_bind	PF01726.11	gi|292655340|ref|YP_003535237.1|	-	0.002	17.6	0.0	0.0026	17.2	0.0	1.2	1	0	0	1	1	1	1	LexA	DNA	binding	domain
Myb_DNA-bind_6	PF13921.1	gi|292655340|ref|YP_003535237.1|	-	0.0035	17.4	0.1	0.0043	17.1	0.0	1.2	1	0	0	1	1	1	1	Myb-like	DNA-binding	domain
HTH_24	PF13412.1	gi|292655340|ref|YP_003535237.1|	-	0.014	14.7	0.9	0.047	13.0	0.1	2.2	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292655340|ref|YP_003535237.1|	-	0.042	13.3	0.1	0.14	11.7	0.0	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Polyketide_cyc2	PF10604.4	gi|292655341|ref|YP_003535238.1|	-	4.7e-15	55.9	1.5	5.4e-15	55.7	1.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.8	gi|292655341|ref|YP_003535238.1|	-	0.0004	20.0	0.0	0.00047	19.8	0.0	1.2	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.15	gi|292655341|ref|YP_003535238.1|	-	0.0044	17.0	0.1	0.0053	16.7	0.1	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF2505	PF10698.4	gi|292655341|ref|YP_003535238.1|	-	0.08	12.4	0.0	0.59	9.6	0.0	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2505)
AHSA1	PF08327.6	gi|292655341|ref|YP_003535238.1|	-	0.098	12.7	0.4	0.44	10.6	0.3	1.9	1	1	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Glyco_tran_WecB	PF03808.8	gi|292655342|ref|YP_003535239.1|	-	0.094	12.1	0.0	0.11	11.9	0.0	1.0	1	0	0	1	1	1	0	Glycosyl	transferase	WecB/TagA/CpsF	family
Aldedh	PF00171.17	gi|292655343|ref|YP_003535240.1|	-	3.5e-144	480.5	0.0	4e-144	480.3	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|292655343|ref|YP_003535240.1|	-	0.0016	17.2	0.0	0.0034	16.1	0.0	1.4	1	1	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
SPOUT_MTase_2	PF14419.1	gi|292655343|ref|YP_003535240.1|	-	0.088	11.9	0.0	0.29	10.2	0.0	1.8	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
HTH_10	PF04967.7	gi|292655344|ref|YP_003535241.1|	-	1.2e-19	69.5	0.2	1.9e-19	68.9	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|292655344|ref|YP_003535241.1|	-	0.00041	19.7	1.4	0.004	16.5	1.0	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
TetR_N	PF00440.18	gi|292655344|ref|YP_003535241.1|	-	0.0042	16.6	0.1	0.012	15.1	0.0	1.7	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
HTH_24	PF13412.1	gi|292655344|ref|YP_003535241.1|	-	0.0058	15.9	0.1	0.011	15.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292655344|ref|YP_003535241.1|	-	0.01	15.4	0.1	0.025	14.2	0.0	1.7	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|292655344|ref|YP_003535241.1|	-	0.014	15.1	0.5	0.042	13.6	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655344|ref|YP_003535241.1|	-	0.036	13.7	0.0	0.094	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_psq	PF05225.11	gi|292655344|ref|YP_003535241.1|	-	0.085	12.4	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
Pro_dh	PF01619.13	gi|292655345|ref|YP_003535242.1|	-	1.4e-36	126.0	0.0	3.1e-36	124.9	0.0	1.5	1	1	0	1	1	1	1	Proline	dehydrogenase
Peripla_BP_6	PF13458.1	gi|292655346|ref|YP_003535243.1|	-	3.9e-38	131.6	7.6	4.4e-38	131.4	5.3	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|292655346|ref|YP_003535243.1|	-	1.3e-25	89.9	0.2	1.9e-25	89.4	0.2	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|292655346|ref|YP_003535243.1|	-	3.6e-07	29.2	2.8	6.8e-05	21.7	0.2	2.0	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
BPD_transp_2	PF02653.11	gi|292655347|ref|YP_003535244.1|	-	3.8e-28	98.1	16.1	4.8e-28	97.8	11.2	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
HTH_8	PF02954.14	gi|292655347|ref|YP_003535244.1|	-	0.45	10.1	1.7	0.64	9.5	0.3	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
BPD_transp_2	PF02653.11	gi|292655348|ref|YP_003535245.1|	-	3.8e-51	173.6	26.4	3.8e-51	173.6	18.3	1.6	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF4381	PF14316.1	gi|292655348|ref|YP_003535245.1|	-	0.1	12.6	0.7	0.35	10.9	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
ABC_tran	PF00005.22	gi|292655349|ref|YP_003535246.1|	-	1.4e-32	112.8	0.0	1.9e-32	112.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655349|ref|YP_003535246.1|	-	8.1e-12	45.7	1.8	6e-05	23.1	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|292655349|ref|YP_003535246.1|	-	3.5e-10	39.3	0.0	7.2e-10	38.3	0.0	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.14	gi|292655349|ref|YP_003535246.1|	-	6.1e-06	25.6	0.0	1.4e-05	24.4	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|292655349|ref|YP_003535246.1|	-	0.00014	22.2	0.2	0.00027	21.3	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|292655349|ref|YP_003535246.1|	-	0.00071	19.0	0.1	0.0014	18.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|292655349|ref|YP_003535246.1|	-	0.0028	16.8	0.0	0.0058	15.8	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|292655349|ref|YP_003535246.1|	-	0.026	13.5	0.2	2.2	7.2	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|292655349|ref|YP_003535246.1|	-	0.036	14.0	0.1	0.061	13.2	0.1	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.1	gi|292655349|ref|YP_003535246.1|	-	0.088	12.7	0.1	0.91	9.4	0.1	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.1	gi|292655349|ref|YP_003535246.1|	-	0.09	12.6	0.0	0.15	11.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|292655350|ref|YP_003535247.1|	-	1.6e-31	109.4	0.0	2.1e-31	109.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655350|ref|YP_003535247.1|	-	1.9e-13	51.0	0.0	1.3e-05	25.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|292655350|ref|YP_003535247.1|	-	3e-05	24.4	0.0	6.1e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655350|ref|YP_003535247.1|	-	5e-05	22.6	0.0	0.0081	15.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292655350|ref|YP_003535247.1|	-	0.00026	20.4	0.0	0.00045	19.7	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|292655350|ref|YP_003535247.1|	-	0.00064	19.8	0.1	0.0037	17.4	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292655350|ref|YP_003535247.1|	-	0.00078	19.4	0.4	0.003	17.5	0.3	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292655350|ref|YP_003535247.1|	-	0.0026	17.9	0.0	0.02	15.0	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|292655350|ref|YP_003535247.1|	-	0.0027	16.9	0.0	0.0048	16.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|292655350|ref|YP_003535247.1|	-	0.0058	15.7	0.0	0.069	12.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292655350|ref|YP_003535247.1|	-	0.0089	15.4	0.2	0.45	9.8	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
AAA_17	PF13207.1	gi|292655350|ref|YP_003535247.1|	-	0.02	15.7	1.2	0.054	14.3	0.8	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|292655350|ref|YP_003535247.1|	-	0.023	14.2	0.0	0.061	12.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|292655350|ref|YP_003535247.1|	-	0.029	14.2	0.0	0.061	13.2	0.0	1.7	1	1	1	2	2	2	0	AAA	domain
MutS_V	PF00488.16	gi|292655350|ref|YP_003535247.1|	-	0.036	13.4	0.0	0.061	12.7	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
AAA_5	PF07728.9	gi|292655350|ref|YP_003535247.1|	-	0.041	13.6	0.0	0.08	12.6	0.0	1.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|292655350|ref|YP_003535247.1|	-	0.064	13.1	0.1	0.11	12.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|292655350|ref|YP_003535247.1|	-	0.074	12.7	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
NACHT	PF05729.7	gi|292655350|ref|YP_003535247.1|	-	0.14	11.7	0.1	0.24	11.0	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
RIO1	PF01163.17	gi|292655351|ref|YP_003535248.1|	-	1.4e-09	37.5	0.0	2.2e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|292655351|ref|YP_003535248.1|	-	1.4e-08	34.7	3.3	0.00061	19.6	0.5	2.4	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|292655351|ref|YP_003535248.1|	-	7.6e-07	28.3	0.0	1.2e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.20	gi|292655351|ref|YP_003535248.1|	-	1.4e-05	24.3	0.0	1.9e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|292655351|ref|YP_003535248.1|	-	0.046	12.7	0.0	0.063	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	tyrosine	kinase
Usp	PF00582.21	gi|292655352|ref|YP_003535249.1|	-	1.8e-39	135.1	4.5	2e-39	134.9	3.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Acyl-CoA_dh_1	PF00441.19	gi|292655353|ref|YP_003535250.1|	-	4.4e-48	163.1	1.1	6.2e-48	162.7	0.7	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|292655353|ref|YP_003535250.1|	-	1.5e-36	125.4	0.1	3.3e-36	124.2	0.1	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|292655353|ref|YP_003535250.1|	-	3.2e-18	64.9	0.5	1.4e-17	62.9	0.1	2.0	1	1	1	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|292655353|ref|YP_003535250.1|	-	4.8e-15	55.9	2.2	9.7e-15	54.9	1.5	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_ox_N	PF14749.1	gi|292655353|ref|YP_003535250.1|	-	0.069	13.4	0.1	0.15	12.3	0.0	1.6	2	0	0	2	2	2	0	Acyl-coenzyme	A	oxidase	N-terminal
HpaB_N	PF11794.3	gi|292655353|ref|YP_003535250.1|	-	0.092	12.1	0.4	0.39	10.0	0.3	2.0	1	1	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Arch_fla_DE	PF04659.8	gi|292655354|ref|YP_003535251.1|	-	3.2e-14	52.5	0.0	5e-14	51.9	0.0	1.3	1	0	0	1	1	1	1	Archaeal	flagella	protein
PAS	PF00989.19	gi|292655355|ref|YP_003535252.1|	-	1.6e-25	89.0	0.1	5.6e-13	48.6	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.5	gi|292655355|ref|YP_003535252.1|	-	2.2e-23	82.4	7.0	7.1e-13	48.5	0.3	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.1	gi|292655355|ref|YP_003535252.1|	-	7.8e-18	64.7	0.1	9e-12	45.2	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_3	PF08447.6	gi|292655355|ref|YP_003535252.1|	-	9.3e-16	57.7	0.0	2.7e-15	56.2	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
HATPase_c	PF02518.21	gi|292655355|ref|YP_003535252.1|	-	1.4e-11	44.1	0.0	2.7e-11	43.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|292655355|ref|YP_003535252.1|	-	4.1e-09	35.9	0.1	0.0028	17.4	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.20	gi|292655355|ref|YP_003535252.1|	-	7.1e-06	25.9	1.3	2.4e-05	24.2	0.9	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.2	gi|292655355|ref|YP_003535252.1|	-	8.3e-06	25.7	0.9	0.011	15.7	0.1	3.5	2	1	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.1	gi|292655355|ref|YP_003535252.1|	-	2.1e-05	24.2	0.1	5.8e-05	22.8	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.1	gi|292655355|ref|YP_003535252.1|	-	0.00031	20.9	0.0	0.48	10.7	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c_3	PF13589.1	gi|292655355|ref|YP_003535252.1|	-	0.0067	16.0	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_11	PF14598.1	gi|292655355|ref|YP_003535252.1|	-	0.0081	16.1	0.0	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
SPOB_a	PF14689.1	gi|292655355|ref|YP_003535252.1|	-	0.053	13.1	0.9	0.13	11.8	0.6	1.6	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
MreB_Mbl	PF06723.8	gi|292655356|ref|YP_003535253.1|	-	0.086	11.4	0.0	0.25	9.9	0.0	1.9	1	1	0	1	1	1	0	MreB/Mbl	protein
Arch_fla_DE	PF04659.8	gi|292655357|ref|YP_003535254.1|	-	8.4e-26	89.7	0.0	1.1e-25	89.2	0.0	1.2	1	0	0	1	1	1	1	Archaeal	flagella	protein
DUF835	PF05763.7	gi|292655357|ref|YP_003535254.1|	-	0.012	15.1	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF835)
CheD	PF03975.8	gi|292655359|ref|YP_003535256.1|	-	2.1e-28	98.3	0.0	2.7e-28	98.0	0.0	1.1	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
CheC	PF04509.7	gi|292655360|ref|YP_003535257.1|	-	1.6e-25	88.5	0.0	5.4e-13	48.4	0.0	2.5	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.1	gi|292655360|ref|YP_003535257.1|	-	1.5e-21	76.0	0.0	7.4e-10	38.5	0.0	2.3	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
Phage_hub_GP28	PF11110.3	gi|292655360|ref|YP_003535257.1|	-	0.13	11.9	0.6	18	4.9	0.1	2.8	2	1	0	2	2	2	0	Baseplate	hub	distal	subunit
Response_reg	PF00072.19	gi|292655361|ref|YP_003535258.1|	-	3e-29	101.2	0.1	3.4e-29	101.0	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CoA_binding_2	PF13380.1	gi|292655361|ref|YP_003535258.1|	-	0.059	13.5	0.1	0.08	13.1	0.0	1.2	1	0	0	1	1	1	0	CoA	binding	domain
DNA_pol_phi	PF04931.8	gi|292655362|ref|YP_003535259.1|	-	0.11	10.2	0.5	0.15	9.8	0.3	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
Pneumo_att_G	PF05539.6	gi|292655362|ref|YP_003535259.1|	-	0.13	11.5	0.3	0.16	11.3	0.2	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
HTH_20	PF12840.2	gi|292655363|ref|YP_003535260.1|	-	7.6e-09	35.2	0.1	1.3e-08	34.5	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655363|ref|YP_003535260.1|	-	7.4e-05	22.3	0.0	0.00012	21.5	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|292655363|ref|YP_003535260.1|	-	0.00094	18.5	0.0	0.0014	17.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|292655363|ref|YP_003535260.1|	-	0.0027	17.2	0.0	0.0042	16.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|292655363|ref|YP_003535260.1|	-	0.0036	16.9	0.0	0.0081	15.8	0.0	1.6	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292655363|ref|YP_003535260.1|	-	0.0045	16.6	0.0	0.0065	16.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrfA	PF07042.6	gi|292655363|ref|YP_003535260.1|	-	0.035	12.9	0.0	0.039	12.7	0.0	1.1	1	0	0	1	1	1	0	TrfA	protein
DUF4368	PF14287.1	gi|292655363|ref|YP_003535260.1|	-	0.047	13.5	0.0	0.064	13.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4368)
HTH_23	PF13384.1	gi|292655363|ref|YP_003535260.1|	-	0.065	12.9	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HemN_C	PF06969.11	gi|292655363|ref|YP_003535260.1|	-	0.076	13.0	0.0	0.15	12.1	0.0	1.6	1	1	0	1	1	1	0	HemN	C-terminal	domain
Arch_flagellin	PF01917.11	gi|292655364|ref|YP_003535261.1|	-	5.4e-30	104.4	13.5	6.7e-30	104.1	9.3	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.11	gi|292655365|ref|YP_003535262.1|	-	5.4e-33	114.2	14.6	6.8e-33	113.8	10.1	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
KaiC	PF06745.8	gi|292655366|ref|YP_003535263.1|	-	3e-51	173.7	0.0	3.4e-51	173.5	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|292655366|ref|YP_003535263.1|	-	6.3e-11	42.0	0.0	2e-10	40.4	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
DUF2075	PF09848.4	gi|292655366|ref|YP_003535263.1|	-	0.0012	17.9	0.0	0.0013	17.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
GvpD	PF07088.6	gi|292655366|ref|YP_003535263.1|	-	0.0044	15.4	0.1	0.14	10.4	0.1	2.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.1	gi|292655366|ref|YP_003535263.1|	-	0.0054	16.3	0.1	0.013	15.0	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
DnaB_C	PF03796.10	gi|292655366|ref|YP_003535263.1|	-	0.048	12.5	0.0	0.077	11.8	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
FtsK_SpoIIIE	PF01580.13	gi|292655366|ref|YP_003535263.1|	-	0.049	13.0	0.1	0.094	12.1	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_14	PF13173.1	gi|292655366|ref|YP_003535263.1|	-	0.063	13.1	0.1	0.14	12.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
PAXNEB	PF05625.6	gi|292655366|ref|YP_003535263.1|	-	0.079	11.7	0.4	7	5.3	0.1	2.1	2	0	0	2	2	2	0	PAXNEB	protein
AAA_22	PF13401.1	gi|292655366|ref|YP_003535263.1|	-	0.1	12.7	0.1	0.26	11.4	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|292655366|ref|YP_003535263.1|	-	0.14	11.9	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
FlaC_arch	PF05377.6	gi|292655367|ref|YP_003535264.1|	-	5.3e-20	71.0	0.4	1.2e-19	69.9	0.3	1.7	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
Arch_fla_DE	PF04659.8	gi|292655367|ref|YP_003535264.1|	-	2e-18	66.0	0.0	5.5e-18	64.6	0.0	1.8	1	0	0	1	1	1	1	Archaeal	flagella	protein
TBPIP	PF07106.8	gi|292655367|ref|YP_003535264.1|	-	0.015	14.8	0.1	0.035	13.6	0.1	1.5	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF812	PF05667.6	gi|292655367|ref|YP_003535264.1|	-	0.016	13.7	0.0	0.027	12.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
NPV_P10	PF05531.7	gi|292655367|ref|YP_003535264.1|	-	0.025	14.8	0.5	0.063	13.5	0.1	1.9	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Nsp1_C	PF05064.8	gi|292655367|ref|YP_003535264.1|	-	0.03	13.9	0.7	0.075	12.6	0.5	1.6	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
DUF904	PF06005.7	gi|292655367|ref|YP_003535264.1|	-	0.034	14.4	1.4	0.15	12.3	0.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
IncA	PF04156.9	gi|292655367|ref|YP_003535264.1|	-	0.043	13.4	0.5	0.086	12.4	0.0	1.8	2	0	0	2	2	2	0	IncA	protein
Syntaxin	PF00804.20	gi|292655367|ref|YP_003535264.1|	-	0.066	13.3	0.0	0.18	12.0	0.0	1.7	1	0	0	1	1	1	0	Syntaxin
bZIP_1	PF00170.16	gi|292655367|ref|YP_003535264.1|	-	0.15	12.0	1.6	0.23	11.4	0.4	1.9	2	0	0	2	2	2	0	bZIP	transcription	factor
DUF972	PF06156.8	gi|292655367|ref|YP_003535264.1|	-	0.16	12.3	3.3	0.19	12.0	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Arch_flagellin	PF01917.11	gi|292655368|ref|YP_003535265.1|	-	2.3e-07	30.6	7.3	4.4e-07	29.7	5.0	1.5	1	1	0	1	1	1	1	Archaebacterial	flagellin
chaperone_DMP	PF10448.4	gi|292655368|ref|YP_003535265.1|	-	0.096	12.5	0.3	0.12	12.2	0.2	1.1	1	0	0	1	1	1	0	20S	proteasome	chaperone
Arch_flagellin	PF01917.11	gi|292655369|ref|YP_003535266.1|	-	8.1e-13	48.4	2.2	1.1e-12	48.0	1.5	1.4	1	1	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.6	gi|292655369|ref|YP_003535266.1|	-	2.8e-06	27.2	0.2	4e-06	26.8	0.1	1.2	1	0	0	1	1	1	1	CARDB
KaiC	PF06745.8	gi|292655370|ref|YP_003535267.1|	-	9.3e-18	64.1	0.1	1.9e-17	63.1	0.1	1.3	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|292655370|ref|YP_003535267.1|	-	1.5e-07	31.0	0.0	2.3e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|292655370|ref|YP_003535267.1|	-	6.5e-06	25.9	0.1	2.1e-05	24.2	0.1	1.8	1	1	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|292655370|ref|YP_003535267.1|	-	2.9e-05	24.1	0.2	5.9e-05	23.2	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|292655370|ref|YP_003535267.1|	-	4.2e-05	23.1	0.0	8.7e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_16	PF13191.1	gi|292655370|ref|YP_003535267.1|	-	0.00015	21.8	0.7	0.00027	20.9	0.5	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
Resolvase	PF00239.16	gi|292655370|ref|YP_003535267.1|	-	0.00062	19.6	0.1	0.00095	19.0	0.1	1.3	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
AAA	PF00004.24	gi|292655370|ref|YP_003535267.1|	-	0.014	15.6	0.6	0.035	14.2	0.4	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|292655370|ref|YP_003535267.1|	-	0.021	15.1	0.1	0.037	14.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
TIP49	PF06068.8	gi|292655370|ref|YP_003535267.1|	-	0.031	12.9	0.0	1.4	7.5	0.0	2.2	2	0	0	2	2	2	0	TIP49	C-terminus
CofC	PF01983.11	gi|292655370|ref|YP_003535267.1|	-	0.052	12.5	0.1	0.072	12.0	0.0	1.2	1	0	0	1	1	1	0	Guanylyl	transferase	CofC	like
Rad51	PF08423.6	gi|292655370|ref|YP_003535267.1|	-	0.071	11.9	0.2	0.23	10.3	0.1	1.8	1	1	0	1	1	1	0	Rad51
FF	PF01846.14	gi|292655370|ref|YP_003535267.1|	-	0.075	12.9	0.2	0.29	11.1	0.1	2.0	1	1	1	2	2	2	0	FF	domain
PAXNEB	PF05625.6	gi|292655370|ref|YP_003535267.1|	-	0.093	11.5	0.2	0.19	10.5	0.2	1.4	2	0	0	2	2	2	0	PAXNEB	protein
DUF3186	PF11382.3	gi|292655370|ref|YP_003535267.1|	-	0.1	11.6	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3186)
DUF2075	PF09848.4	gi|292655370|ref|YP_003535267.1|	-	0.14	11.0	0.0	0.17	10.8	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
T2SE	PF00437.15	gi|292655371|ref|YP_003535268.1|	-	4.6e-45	153.6	0.0	6.5e-45	153.1	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|292655371|ref|YP_003535268.1|	-	0.0008	19.4	0.0	0.017	15.1	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292655371|ref|YP_003535268.1|	-	0.0014	18.1	0.0	0.0028	17.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|292655371|ref|YP_003535268.1|	-	0.0036	17.4	0.0	0.0076	16.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|292655371|ref|YP_003535268.1|	-	0.024	14.9	0.0	0.071	13.4	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
Dynamin_N	PF00350.18	gi|292655371|ref|YP_003535268.1|	-	0.065	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
FtsK_SpoIIIE	PF01580.13	gi|292655371|ref|YP_003535268.1|	-	0.077	12.4	0.0	0.19	11.2	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_23	PF13476.1	gi|292655371|ref|YP_003535268.1|	-	0.09	13.0	1.1	0.2	11.9	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
GTP_EFTU	PF00009.22	gi|292655371|ref|YP_003535268.1|	-	0.093	12.1	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AIG1	PF04548.11	gi|292655371|ref|YP_003535268.1|	-	0.1	11.6	0.0	0.17	10.9	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
Zeta_toxin	PF06414.7	gi|292655371|ref|YP_003535268.1|	-	0.1	11.6	0.0	0.19	10.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Miro	PF08477.8	gi|292655371|ref|YP_003535268.1|	-	0.13	12.7	0.0	1	9.8	0.0	2.3	2	0	0	2	2	2	0	Miro-like	protein
MMR_HSR1	PF01926.18	gi|292655371|ref|YP_003535268.1|	-	0.15	11.9	0.0	0.4	10.6	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
T2SF	PF00482.18	gi|292655372|ref|YP_003535269.1|	-	1.6e-13	50.6	2.6	8.1e-10	38.6	0.2	3.6	5	0	0	5	5	5	2	Type	II	secretion	system	(T2SS),	protein	F
AAA_32	PF13654.1	gi|292655372|ref|YP_003535269.1|	-	0.057	12.0	0.1	0.089	11.4	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
CheF-arch	PF04283.7	gi|292655373|ref|YP_003535270.1|	-	1.8e-35	122.1	0.0	2.6e-35	121.6	0.0	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
CheF-arch	PF04283.7	gi|292655375|ref|YP_003535272.1|	-	7.7e-52	175.6	0.1	1.1e-51	175.1	0.1	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
CheR	PF01739.13	gi|292655376|ref|YP_003535273.1|	-	3.3e-50	170.1	0.0	4.2e-50	169.7	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.10	gi|292655376|ref|YP_003535273.1|	-	9.1e-09	34.5	2.3	2.1e-08	33.3	1.6	1.7	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_12	PF08242.7	gi|292655376|ref|YP_003535273.1|	-	1.6e-08	34.9	0.0	3.3e-06	27.4	0.0	2.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655376|ref|YP_003535273.1|	-	1e-05	25.8	0.0	2.1e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655376|ref|YP_003535273.1|	-	1.2e-05	25.7	0.0	3.1e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655376|ref|YP_003535273.1|	-	0.0002	21.1	0.0	0.00029	20.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655376|ref|YP_003535273.1|	-	0.0013	18.3	0.0	0.44	10.1	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655376|ref|YP_003535273.1|	-	0.0029	18.0	0.1	0.094	13.2	0.0	2.8	2	1	0	2	2	2	1	Methyltransferase	domain
NodS	PF05401.6	gi|292655376|ref|YP_003535273.1|	-	0.092	12.1	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
HATPase_c	PF02518.21	gi|292655377|ref|YP_003535274.1|	-	5.2e-24	84.1	0.2	1.8e-23	82.4	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CheW	PF01584.14	gi|292655377|ref|YP_003535274.1|	-	9.2e-20	70.5	2.4	2.6e-19	69.0	1.4	2.0	2	0	0	2	2	2	1	CheW-like	domain
Hpt	PF01627.18	gi|292655377|ref|YP_003535274.1|	-	4.2e-19	68.3	1.9	9.4e-19	67.2	0.3	2.5	2	0	0	2	2	2	1	Hpt	domain
H-kinase_dim	PF02895.9	gi|292655377|ref|YP_003535274.1|	-	6.8e-09	35.9	7.2	9.9e-09	35.4	3.4	2.5	3	0	0	3	3	3	1	Signal	transducing	histidine	kinase,	homodimeric	domain
P2	PF07194.6	gi|292655377|ref|YP_003535274.1|	-	3e-07	30.1	0.0	9.8e-07	28.5	0.0	1.9	1	0	0	1	1	1	1	P2	response	regulator	binding	domain
HATPase_c_2	PF13581.1	gi|292655377|ref|YP_003535274.1|	-	0.0041	16.9	0.6	0.014	15.1	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|292655377|ref|YP_003535274.1|	-	0.024	14.3	0.0	0.088	12.5	0.0	1.9	1	1	0	1	1	1	0	GHKL	domain
FumaraseC_C	PF10415.4	gi|292655377|ref|YP_003535274.1|	-	0.067	13.2	0.3	14	5.8	0.0	2.7	2	0	0	2	2	2	0	Fumarase	C	C-terminus
Daxx	PF03344.10	gi|292655377|ref|YP_003535274.1|	-	1.4	7.2	15.2	2.2	6.6	10.6	1.2	1	0	0	1	1	1	0	Daxx	Family
CheB_methylest	PF01339.12	gi|292655378|ref|YP_003535275.1|	-	3.3e-60	202.6	0.6	8.1e-60	201.3	0.4	1.6	1	0	0	1	1	1	1	CheB	methylesterase
Response_reg	PF00072.19	gi|292655378|ref|YP_003535275.1|	-	5.1e-27	94.1	0.8	1.6e-26	92.4	0.6	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CheW	PF01584.14	gi|292655379|ref|YP_003535276.1|	-	1.8e-25	88.9	0.1	2e-25	88.8	0.1	1.0	1	0	0	1	1	1	1	CheW-like	domain
MFS_1	PF07690.11	gi|292655380|ref|YP_003535277.1|	-	0.069	11.8	20.9	0.1	11.3	14.5	1.2	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
Ni_hydr_CYTB	PF01292.15	gi|292655380|ref|YP_003535277.1|	-	0.1	12.0	4.2	0.13	11.6	2.9	1.1	1	0	0	1	1	1	0	Prokaryotic	cytochrome	b561
DUF4407	PF14362.1	gi|292655380|ref|YP_003535277.1|	-	3.8	6.3	14.9	0.032	13.1	4.5	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Xan_ur_permease	PF00860.15	gi|292655381|ref|YP_003535278.1|	-	8.9e-69	231.8	48.6	6.1e-68	229.0	33.7	2.3	1	1	0	1	1	1	1	Permease	family
Copper-bind	PF00127.15	gi|292655382|ref|YP_003535279.1|	-	5.6e-14	52.1	0.2	2.2e-13	50.2	0.1	2.1	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|292655382|ref|YP_003535279.1|	-	0.0059	16.5	0.3	0.0059	16.5	0.2	4.4	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.1	gi|292655382|ref|YP_003535279.1|	-	0.031	14.1	0.1	0.33	10.8	0.1	2.2	1	1	0	1	1	1	0	Cupredoxin-like	domain
MS_channel	PF00924.13	gi|292655384|ref|YP_003535281.1|	-	2.8e-47	160.7	0.0	3.4e-47	160.4	0.0	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DUF457	PF04307.9	gi|292655385|ref|YP_003535282.1|	-	7.7e-18	64.3	11.0	9.2e-18	64.0	7.6	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
CMD	PF02627.15	gi|292655386|ref|YP_003535283.1|	-	6.6e-10	38.7	0.1	9.8e-09	34.9	0.0	2.3	2	0	0	2	2	2	1	Carboxymuconolactone	decarboxylase	family
CSD	PF00313.17	gi|292655387|ref|YP_003535284.1|	-	5e-22	77.4	0.2	5.4e-22	77.3	0.2	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.6	gi|292655387|ref|YP_003535284.1|	-	0.0033	16.8	1.9	0.0048	16.3	1.3	1.3	1	0	0	1	1	1	1	Ribonuclease	B	OB	domain
S1-like	PF14444.1	gi|292655387|ref|YP_003535284.1|	-	0.0072	16.0	0.7	0.01	15.5	0.5	1.4	1	1	0	1	1	1	1	S1-like
CusF_Ec	PF11604.3	gi|292655387|ref|YP_003535284.1|	-	0.022	14.5	0.0	0.028	14.2	0.0	1.2	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
DPRP	PF04244.8	gi|292655388|ref|YP_003535285.1|	-	3.7e-66	222.8	0.0	5.3e-66	222.3	0.0	1.2	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
FAD_binding_7	PF03441.9	gi|292655388|ref|YP_003535285.1|	-	2.4e-10	40.0	0.0	3.4e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DUF552	PF04472.7	gi|292655388|ref|YP_003535285.1|	-	0.042	13.7	0.0	0.084	12.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF552)
Creatininase	PF02633.9	gi|292655389|ref|YP_003535286.1|	-	1.5e-68	230.4	0.3	1.7e-68	230.2	0.2	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
AMP-binding	PF00501.23	gi|292655390|ref|YP_003535287.1|	-	6.3e-80	268.5	0.0	7.5e-80	268.3	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655390|ref|YP_003535287.1|	-	6.3e-20	71.8	0.9	3e-19	69.7	0.2	2.4	3	0	0	3	3	3	1	AMP-binding	enzyme	C-terminal	domain
Bactofilin	PF04519.8	gi|292655391|ref|YP_003535288.1|	-	8.4e-08	32.1	6.5	1.4e-07	31.4	4.5	1.3	1	0	0	1	1	1	1	Polymer-forming	cytoskeletal
Aldo_ket_red	PF00248.16	gi|292655392|ref|YP_003535289.1|	-	1.3e-77	260.4	0.0	1.4e-77	260.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
MFS_1	PF07690.11	gi|292655393|ref|YP_003535290.1|	-	7.5e-30	103.8	67.2	3.2e-19	68.8	21.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF3482	PF11981.3	gi|292655393|ref|YP_003535290.1|	-	1.1	8.3	5.4	2.4	7.3	3.7	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Iron_transport	PF10634.4	gi|292655394|ref|YP_003535291.1|	-	1.3e-07	31.6	0.0	7e-05	22.7	0.0	2.2	2	0	0	2	2	2	2	Fe2+	transport	protein
TAT_signal	PF10518.4	gi|292655394|ref|YP_003535291.1|	-	0.0097	15.8	4.4	0.0097	15.8	3.0	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292655394|ref|YP_003535291.1|	-	0.72	9.0	5.0	0.11	11.6	0.8	1.7	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
SCO1-SenC	PF02630.9	gi|292655395|ref|YP_003535292.1|	-	6.3e-09	35.6	0.0	8.9e-09	35.1	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
TAT_signal	PF10518.4	gi|292655395|ref|YP_003535292.1|	-	0.29	11.2	6.2	0.46	10.6	4.3	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.4	gi|292655396|ref|YP_003535293.1|	-	0.00012	21.8	0.8	0.00012	21.8	0.5	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|292655396|ref|YP_003535293.1|	-	0.14	11.3	2.3	0.1	11.7	0.2	1.8	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DsbD	PF02683.10	gi|292655397|ref|YP_003535294.1|	-	1.6e-11	44.2	13.8	2.2e-11	43.7	9.6	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF3756	PF12581.3	gi|292655397|ref|YP_003535294.1|	-	0.12	12.1	0.3	0.12	12.1	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3756)
Redoxin	PF08534.5	gi|292655398|ref|YP_003535295.1|	-	6.8e-13	48.4	0.0	8.7e-13	48.0	0.0	1.2	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.16	gi|292655398|ref|YP_003535295.1|	-	1.7e-09	37.3	0.0	2.2e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.1	gi|292655398|ref|YP_003535295.1|	-	3.7e-09	36.5	0.0	5.3e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|292655398|ref|YP_003535295.1|	-	4.6e-07	30.0	0.0	6.4e-07	29.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|292655398|ref|YP_003535295.1|	-	1.2e-05	24.9	0.0	0.0004	20.0	0.0	2.1	2	0	0	2	2	2	1	Thioredoxin
CytB6-F_Fe-S	PF08802.5	gi|292655398|ref|YP_003535295.1|	-	0.013	15.4	0.9	0.027	14.4	0.6	1.5	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
Thioredoxin_7	PF13899.1	gi|292655398|ref|YP_003535295.1|	-	0.027	14.4	0.0	2.3	8.2	0.0	2.2	2	0	0	2	2	2	0	Thioredoxin-like
TGF_beta_GS	PF08515.7	gi|292655398|ref|YP_003535295.1|	-	0.74	9.2	4.2	0.55	9.6	0.4	2.4	2	0	0	2	2	2	0	Transforming	growth	factor	beta	type	I	GS-motif
Thioredoxin_4	PF13462.1	gi|292655399|ref|YP_003535296.1|	-	5.6e-36	124.0	0.0	6.7e-36	123.7	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|292655399|ref|YP_003535296.1|	-	6.1e-09	35.7	1.7	0.00017	21.2	0.1	2.1	2	0	0	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|292655399|ref|YP_003535296.1|	-	0.00041	20.5	0.0	0.002	18.3	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|292655399|ref|YP_003535296.1|	-	0.12	12.2	0.0	0.49	10.2	0.0	1.9	2	0	0	2	2	2	0	Thioredoxin	domain
Fer2	PF00111.22	gi|292655400|ref|YP_003535297.1|	-	7.7e-11	41.5	0.9	1.6e-10	40.5	0.1	1.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|292655400|ref|YP_003535297.1|	-	0.00046	19.9	0.3	0.0016	18.1	0.2	1.9	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|292655400|ref|YP_003535297.1|	-	0.15	11.9	0.2	0.18	11.6	0.1	1.3	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
NUDIX	PF00293.23	gi|292655401|ref|YP_003535298.1|	-	1.5e-19	69.9	0.1	2.3e-19	69.4	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|292655401|ref|YP_003535298.1|	-	0.034	13.5	0.0	0.071	12.5	0.0	1.6	1	1	0	1	1	1	0	NUDIX	domain
DUF3862	PF12978.2	gi|292655402|ref|YP_003535299.1|	-	0.12	12.0	0.1	0.12	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3862)
RNA_binding	PF01877.12	gi|292655403|ref|YP_003535300.1|	-	2.1e-28	98.7	0.1	2.5e-28	98.5	0.0	1.2	1	0	0	1	1	1	1	RNA	binding
AhpC-TSA	PF00578.16	gi|292655404|ref|YP_003535301.1|	-	3.2e-16	59.1	0.0	4.5e-16	58.6	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|292655404|ref|YP_003535301.1|	-	2.8e-13	49.6	0.0	3.9e-13	49.1	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.1	gi|292655404|ref|YP_003535301.1|	-	1.2e-05	25.4	0.0	1.6e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|292655404|ref|YP_003535301.1|	-	0.00021	21.3	0.0	0.0003	20.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
TatD_DNase	PF01026.16	gi|292655404|ref|YP_003535301.1|	-	0.0065	15.7	0.0	0.0087	15.2	0.0	1.2	1	0	0	1	1	1	1	TatD	related	DNase
EamA	PF00892.15	gi|292655405|ref|YP_003535302.1|	-	2.1e-07	31.0	12.5	3.2e-07	30.4	8.7	1.5	1	1	0	1	1	1	1	EamA-like	transporter	family
EmrE	PF13536.1	gi|292655405|ref|YP_003535302.1|	-	0.0079	16.3	9.2	0.0079	16.3	6.4	2.1	1	1	1	2	2	2	1	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|292655405|ref|YP_003535302.1|	-	0.26	10.9	8.6	0.46	10.1	6.0	1.5	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
zf-RING_2	PF13639.1	gi|292655406|ref|YP_003535303.1|	-	0.039	13.7	0.1	2.2	8.2	0.0	2.1	2	0	0	2	2	2	0	Ring	finger	domain
zf-Di19	PF05605.7	gi|292655406|ref|YP_003535303.1|	-	0.12	12.5	0.3	0.26	11.4	0.2	1.7	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
SnoaL	PF07366.7	gi|292655407|ref|YP_003535304.1|	-	1e-16	60.6	0.2	1.1e-16	60.5	0.1	1.0	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_2	PF12680.2	gi|292655407|ref|YP_003535304.1|	-	1e-10	41.9	2.4	1.2e-10	41.6	1.7	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
Gly-zipper_OmpA	PF13436.1	gi|292655408|ref|YP_003535305.1|	-	0.24	11.0	4.9	0.26	10.9	3.4	1.1	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Bacteriocin_IIc	PF10439.4	gi|292655408|ref|YP_003535305.1|	-	0.25	11.4	8.8	0.27	11.3	6.1	1.1	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Gly-zipper_Omp	PF13488.1	gi|292655408|ref|YP_003535305.1|	-	2.3	7.8	10.3	3.8	7.2	7.2	1.5	1	1	0	1	1	1	0	Glycine	zipper
Gly-zipper_YMGG	PF13441.1	gi|292655408|ref|YP_003535305.1|	-	6.5	6.3	10.0	0.65	9.5	2.9	1.7	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
DUF883	PF05957.8	gi|292655408|ref|YP_003535305.1|	-	9.1	6.7	5.7	13	6.2	4.0	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
MFS_1	PF07690.11	gi|292655409|ref|YP_003535306.1|	-	9.2e-41	139.7	50.5	2.5e-22	79.1	13.7	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|292655409|ref|YP_003535306.1|	-	0.00025	19.7	15.2	0.00025	19.7	10.5	2.3	2	1	0	2	2	2	1	Sugar	(and	other)	transporter
OATP	PF03137.15	gi|292655409|ref|YP_003535306.1|	-	0.00051	18.2	0.1	0.0016	16.5	0.0	2.0	1	1	1	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF58	PF01882.13	gi|292655410|ref|YP_003535307.1|	-	1.3e-20	73.2	0.0	1.4e-19	69.9	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
VWA_CoxE	PF05762.9	gi|292655410|ref|YP_003535307.1|	-	0.0002	20.5	0.5	0.0018	17.4	0.3	2.2	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.1	gi|292655410|ref|YP_003535307.1|	-	0.11	12.6	0.4	0.27	11.3	0.2	1.7	1	1	0	1	1	1	0	von	Willebrand	factor	type	A	domain
AAA_3	PF07726.6	gi|292655411|ref|YP_003535308.1|	-	6.4e-61	203.7	0.1	1e-60	203.1	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292655411|ref|YP_003535308.1|	-	8.4e-12	44.9	0.0	1.4e-11	44.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|292655411|ref|YP_003535308.1|	-	1.4e-07	30.7	0.0	1.5e-06	27.2	0.0	2.0	1	1	0	1	1	1	1	MCM2/3/5	family
AAA	PF00004.24	gi|292655411|ref|YP_003535308.1|	-	8.7e-06	25.9	0.0	1.3e-05	25.3	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|292655411|ref|YP_003535308.1|	-	0.00073	19.0	0.0	0.0065	15.9	0.0	2.0	2	0	0	2	2	2	1	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|292655411|ref|YP_003535308.1|	-	0.012	14.6	0.0	0.14	11.2	0.0	2.3	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Mg_chelatase	PF01078.16	gi|292655411|ref|YP_003535308.1|	-	0.019	14.1	0.0	0.31	10.1	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
HMGL-like	PF00682.14	gi|292655411|ref|YP_003535308.1|	-	0.028	14.0	0.1	0.066	12.8	0.0	1.6	2	0	0	2	2	2	0	HMGL-like
Vma12	PF11712.3	gi|292655412|ref|YP_003535309.1|	-	0.0059	16.3	0.4	0.015	15.0	0.3	1.6	1	1	0	1	1	1	1	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
DUF3566	PF12089.3	gi|292655412|ref|YP_003535309.1|	-	0.046	13.7	0.4	0.95	9.4	0.0	2.2	2	0	0	2	2	2	0	Transmembrane	domain	of	unknown	function	(DUF3566)
Tropomyosin_1	PF12718.2	gi|292655413|ref|YP_003535310.1|	-	9.3e-10	38.5	34.1	1.5e-05	24.8	2.6	3.1	1	1	2	3	3	3	2	Tropomyosin	like
Atg14	PF10186.4	gi|292655413|ref|YP_003535310.1|	-	1.2e-09	37.6	23.9	2.6e-07	29.8	10.0	2.0	1	1	1	2	2	2	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
TPR_MLP1_2	PF07926.7	gi|292655413|ref|YP_003535310.1|	-	2.9e-09	36.7	29.3	9.6e-09	35.0	18.1	2.1	1	1	1	2	2	2	1	TPR/MLP1/MLP2-like	protein
IncA	PF04156.9	gi|292655413|ref|YP_003535310.1|	-	1.8e-08	34.2	41.5	3.3e-06	26.8	6.9	2.9	1	1	1	2	2	2	2	IncA	protein
AAA_13	PF13166.1	gi|292655413|ref|YP_003535310.1|	-	2e-08	33.1	13.5	2.7e-08	32.7	9.3	1.1	1	0	0	1	1	1	1	AAA	domain
Myosin_tail_1	PF01576.14	gi|292655413|ref|YP_003535310.1|	-	2.1e-08	32.4	26.8	2.8e-08	31.9	18.6	1.1	1	0	0	1	1	1	1	Myosin	tail
Filament	PF00038.16	gi|292655413|ref|YP_003535310.1|	-	2.9e-08	33.5	41.0	9.2e-06	25.3	10.8	2.6	1	1	1	2	2	2	2	Intermediate	filament	protein
TMF_DNA_bd	PF12329.3	gi|292655413|ref|YP_003535310.1|	-	3e-08	33.3	34.8	2e-06	27.4	6.0	3.3	1	1	2	3	3	3	2	TATA	element	modulatory	factor	1	DNA	binding
DUF869	PF05911.6	gi|292655413|ref|YP_003535310.1|	-	3.2e-08	32.3	23.2	2.8e-06	25.8	9.6	2.0	1	1	1	2	2	2	2	Plant	protein	of	unknown	function	(DUF869)
Laminin_II	PF06009.7	gi|292655413|ref|YP_003535310.1|	-	6.8e-08	32.3	20.1	1.8e-07	30.9	4.4	3.0	1	1	2	3	3	3	1	Laminin	Domain	II
Laminin_I	PF06008.9	gi|292655413|ref|YP_003535310.1|	-	9.8e-08	31.6	19.1	5.2e-05	22.6	6.4	2.4	2	0	0	2	2	2	2	Laminin	Domain	I
DivIC	PF04977.10	gi|292655413|ref|YP_003535310.1|	-	1.4e-07	30.8	26.1	0.0013	18.2	5.4	4.1	1	1	3	4	4	4	3	Septum	formation	initiator
EzrA	PF06160.7	gi|292655413|ref|YP_003535310.1|	-	1.7e-07	29.8	13.0	2.9e-07	29.0	9.0	1.5	1	1	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
ADIP	PF11559.3	gi|292655413|ref|YP_003535310.1|	-	1.8e-07	31.1	31.5	7.3e-05	22.7	5.4	2.9	1	1	2	3	3	3	3	Afadin-	and	alpha	-actinin-Binding
ATG16	PF08614.6	gi|292655413|ref|YP_003535310.1|	-	3.8e-07	30.1	35.5	0.00047	20.0	14.4	2.2	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
Prefoldin_2	PF01920.15	gi|292655413|ref|YP_003535310.1|	-	6.4e-07	29.1	26.1	0.00081	19.1	0.9	4.1	1	1	3	4	4	4	2	Prefoldin	subunit
DUF3450	PF11932.3	gi|292655413|ref|YP_003535310.1|	-	1e-06	28.2	19.3	0.0011	18.2	5.6	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3450)
CENP-F_leu_zip	PF10473.4	gi|292655413|ref|YP_003535310.1|	-	1.6e-06	28.0	31.3	0.0083	15.9	5.6	3.0	1	1	2	3	3	3	3	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Reo_sigmaC	PF04582.7	gi|292655413|ref|YP_003535310.1|	-	2e-06	27.2	11.2	2e-06	27.2	7.8	2.0	1	1	1	2	2	2	2	Reovirus	sigma	C	capsid	protein
GAS	PF13851.1	gi|292655413|ref|YP_003535310.1|	-	2.2e-06	27.0	22.4	1.8e-05	24.0	8.6	2.1	1	1	1	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
PEARLI-4	PF05278.7	gi|292655413|ref|YP_003535310.1|	-	4.1e-06	26.3	1.6	4.1e-06	26.3	1.1	2.7	1	1	2	3	3	3	1	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
Mod_r	PF07200.8	gi|292655413|ref|YP_003535310.1|	-	5.1e-06	26.4	24.5	0.00061	19.7	3.5	2.6	1	1	1	2	2	2	2	Modifier	of	rudimentary	(Mod(r))	protein
DUF3584	PF12128.3	gi|292655413|ref|YP_003535310.1|	-	6.5e-06	23.8	22.8	1e-05	23.1	15.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
FliJ	PF02050.11	gi|292655413|ref|YP_003535310.1|	-	6.6e-06	26.1	19.9	0.00036	20.5	4.4	2.9	1	1	2	3	3	3	2	Flagellar	FliJ	protein
WEMBL	PF05701.6	gi|292655413|ref|YP_003535310.1|	-	8.6e-06	24.4	17.9	1.1e-05	24.1	12.4	1.1	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
TBPIP	PF07106.8	gi|292655413|ref|YP_003535310.1|	-	1e-05	25.1	24.1	0.0033	16.9	5.7	2.3	1	1	1	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
ERM	PF00769.14	gi|292655413|ref|YP_003535310.1|	-	1.6e-05	24.5	13.6	1.6e-05	24.5	9.4	2.1	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
DUF4201	PF13870.1	gi|292655413|ref|YP_003535310.1|	-	2e-05	24.0	20.2	2.2e-05	23.9	8.8	2.3	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4201)
Spc7	PF08317.6	gi|292655413|ref|YP_003535310.1|	-	2.3e-05	23.2	25.1	0.00037	19.2	17.3	2.0	1	1	0	1	1	1	1	Spc7	kinetochore	protein
PspA_IM30	PF04012.7	gi|292655413|ref|YP_003535310.1|	-	2.3e-05	23.8	20.0	0.00079	18.8	1.5	3.1	1	1	2	3	3	3	1	PspA/IM30	family
AAA_27	PF13514.1	gi|292655413|ref|YP_003535310.1|	-	2.4e-05	22.3	17.8	3e-05	21.9	12.3	1.0	1	0	0	1	1	1	1	AAA	domain
MscS_porin	PF12795.2	gi|292655413|ref|YP_003535310.1|	-	3.2e-05	23.3	40.2	0.00011	21.5	16.1	2.0	1	1	1	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
APG6	PF04111.7	gi|292655413|ref|YP_003535310.1|	-	3.5e-05	22.9	23.2	3.5e-05	22.9	16.1	1.9	1	1	1	2	2	2	2	Autophagy	protein	Apg6
Fib_alpha	PF08702.5	gi|292655413|ref|YP_003535310.1|	-	4.4e-05	23.6	17.5	0.00046	20.3	6.9	2.3	1	1	1	2	2	2	2	Fibrinogen	alpha/beta	chain	family
DUF904	PF06005.7	gi|292655413|ref|YP_003535310.1|	-	5.5e-05	23.3	27.7	0.017	15.4	0.8	3.4	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF904)
COG2	PF06148.6	gi|292655413|ref|YP_003535310.1|	-	6e-05	22.9	17.7	0.00062	19.6	3.4	3.2	1	1	2	3	3	3	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Flagellin_C	PF00700.16	gi|292655413|ref|YP_003535310.1|	-	6.1e-05	23.1	17.2	0.003	17.6	1.1	3.7	1	1	3	4	4	4	2	Bacterial	flagellin	C-terminal	helical	region
Leu_zip	PF15294.1	gi|292655413|ref|YP_003535310.1|	-	6.5e-05	22.1	21.7	0.0011	18.1	8.8	2.1	1	1	1	2	2	2	1	Leucine	zipper
DUF4200	PF13863.1	gi|292655413|ref|YP_003535310.1|	-	7e-05	22.7	23.5	0.00014	21.7	8.5	2.7	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4200)
Cast	PF10174.4	gi|292655413|ref|YP_003535310.1|	-	0.00012	20.3	27.6	0.017	13.2	4.4	2.0	1	1	1	2	2	2	2	RIM-binding	protein	of	the	cytomatrix	active	zone
DUF1664	PF07889.7	gi|292655413|ref|YP_003535310.1|	-	0.00014	21.6	13.9	0.0063	16.3	3.0	2.4	1	1	2	3	3	3	3	Protein	of	unknown	function	(DUF1664)
HrpB7	PF09486.5	gi|292655413|ref|YP_003535310.1|	-	0.00017	21.5	19.4	0.00038	20.4	7.1	2.3	1	1	1	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB7)
V_ATPase_I	PF01496.14	gi|292655413|ref|YP_003535310.1|	-	0.00021	19.3	14.2	0.00021	19.3	9.8	1.8	1	1	1	2	2	2	1	V-type	ATPase	116kDa	subunit	family
Rab5-bind	PF09311.6	gi|292655413|ref|YP_003535310.1|	-	0.00023	21.1	33.8	0.027	14.3	6.4	2.1	1	1	1	2	2	2	2	Rabaptin-like	protein
BLOC1_2	PF10046.4	gi|292655413|ref|YP_003535310.1|	-	0.00025	21.1	21.2	0.029	14.5	3.9	3.3	1	1	2	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
bZIP_1	PF00170.16	gi|292655413|ref|YP_003535310.1|	-	0.00027	20.8	26.0	0.0037	17.1	2.0	5.1	1	1	5	6	6	6	3	bZIP	transcription	factor
Tropomyosin	PF00261.15	gi|292655413|ref|YP_003535310.1|	-	0.0003	19.9	28.1	0.0032	16.5	9.4	1.9	1	1	1	2	2	2	1	Tropomyosin
DUF2968	PF11180.3	gi|292655413|ref|YP_003535310.1|	-	0.00035	20.0	25.0	0.0042	16.4	5.5	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2968)
WXG100	PF06013.7	gi|292655413|ref|YP_003535310.1|	-	0.00039	20.3	17.2	0.0045	16.9	2.3	4.3	1	1	3	4	4	4	1	Proteins	of	100	residues	with	WXG
Baculo_PEP_C	PF04513.7	gi|292655413|ref|YP_003535310.1|	-	0.00049	19.9	21.1	0.028	14.2	6.8	2.3	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1351	PF07083.6	gi|292655413|ref|YP_003535310.1|	-	0.00053	19.6	3.6	0.25	10.9	0.0	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1351)
FH2	PF02181.18	gi|292655413|ref|YP_003535310.1|	-	0.00054	18.9	11.0	0.025	13.4	1.7	2.2	1	1	1	2	2	2	2	Formin	Homology	2	Domain
FlxA	PF14282.1	gi|292655413|ref|YP_003535310.1|	-	0.00068	19.5	7.3	0.00068	19.5	5.1	3.0	1	1	2	3	3	2	1	FlxA-like	protein
DUF342	PF03961.8	gi|292655413|ref|YP_003535310.1|	-	0.00074	18.0	14.9	0.029	12.7	2.1	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF342)
BRE1	PF08647.6	gi|292655413|ref|YP_003535310.1|	-	0.00076	19.4	17.1	0.38	10.7	0.6	3.6	2	2	1	3	3	3	2	BRE1	E3	ubiquitin	ligase
Seryl_tRNA_N	PF02403.17	gi|292655413|ref|YP_003535310.1|	-	0.00085	19.3	20.8	0.0073	16.3	5.4	2.4	1	1	1	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
Nsp1_C	PF05064.8	gi|292655413|ref|YP_003535310.1|	-	0.00087	18.9	11.1	0.00087	18.9	7.7	2.4	1	1	1	2	2	2	1	Nsp1-like	C-terminal	region
Prefoldin	PF02996.12	gi|292655413|ref|YP_003535310.1|	-	0.0012	18.4	22.7	0.55	9.8	0.4	4.5	1	1	3	4	4	4	1	Prefoldin	subunit
Spc24	PF08286.6	gi|292655413|ref|YP_003535310.1|	-	0.0014	18.3	32.2	0.08	12.6	1.8	3.8	1	1	2	3	3	3	1	Spc24	subunit	of	Ndc80
Rootletin	PF15035.1	gi|292655413|ref|YP_003535310.1|	-	0.0014	18.6	35.1	0.0083	16.1	13.5	2.1	1	1	1	2	2	2	1	Ciliary	rootlet	component,	centrosome	cohesion
APG17	PF04108.7	gi|292655413|ref|YP_003535310.1|	-	0.0014	17.4	9.7	0.0014	17.4	6.7	2.0	1	1	2	3	3	3	2	Autophagy	protein	Apg17
DUF4446	PF14584.1	gi|292655413|ref|YP_003535310.1|	-	0.0016	18.3	14.2	0.2	11.4	1.2	3.2	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF4446)
FlaC_arch	PF05377.6	gi|292655413|ref|YP_003535310.1|	-	0.0025	17.6	26.2	0.5	10.2	2.0	5.0	1	1	3	5	5	5	1	Flagella	accessory	protein	C	(FlaC)
DUF4140	PF13600.1	gi|292655413|ref|YP_003535310.1|	-	0.0025	18.2	28.1	0.4	11.1	1.8	4.1	1	1	2	3	3	3	1	N-terminal	domain	of	unknown	function	(DUF4140)
NPV_P10	PF05531.7	gi|292655413|ref|YP_003535310.1|	-	0.0027	17.9	20.0	6.9	7.0	0.1	4.3	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
AIP3	PF03915.8	gi|292655413|ref|YP_003535310.1|	-	0.0029	16.5	14.2	0.0038	16.1	9.9	1.1	1	0	0	1	1	1	1	Actin	interacting	protein	3
ApoLp-III	PF07464.6	gi|292655413|ref|YP_003535310.1|	-	0.0029	17.6	16.5	0.12	12.3	3.1	2.4	1	1	1	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
OmpH	PF03938.9	gi|292655413|ref|YP_003535310.1|	-	0.0032	17.4	20.0	0.093	12.6	5.7	2.7	1	1	1	2	2	2	2	Outer	membrane	protein	(OmpH-like)
DUF3552	PF12072.3	gi|292655413|ref|YP_003535310.1|	-	0.0032	16.7	32.9	0.025	13.8	10.6	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF3552)
DUF4618	PF15397.1	gi|292655413|ref|YP_003535310.1|	-	0.0036	16.6	20.8	0.13	11.6	7.7	2.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4618)
DUF972	PF06156.8	gi|292655413|ref|YP_003535310.1|	-	0.0041	17.4	22.4	0.015	15.6	3.9	3.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF972)
V-SNARE_C	PF12352.3	gi|292655413|ref|YP_003535310.1|	-	0.0047	16.9	22.9	0.052	13.6	1.9	4.5	1	1	3	4	4	4	1	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
IFT57	PF10498.4	gi|292655413|ref|YP_003535310.1|	-	0.005	15.6	23.8	0.026	13.2	8.0	2.0	1	1	1	2	2	2	1	Intra-flagellar	transport	protein	57
Bacillus_HBL	PF05791.6	gi|292655413|ref|YP_003535310.1|	-	0.005	16.2	17.3	0.18	11.1	4.6	2.2	1	1	1	2	2	2	2	Bacillus	haemolytic	enterotoxin	(HBL)
CENP-Q	PF13094.1	gi|292655413|ref|YP_003535310.1|	-	0.0052	16.8	35.2	0.036	14.1	3.1	3.1	1	1	2	3	3	3	2	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Cortex-I_coil	PF09304.5	gi|292655413|ref|YP_003535310.1|	-	0.0054	16.7	31.1	0.012	15.6	5.9	3.1	1	1	2	3	3	3	1	Cortexillin	I,	coiled	coil
COG5	PF10392.4	gi|292655413|ref|YP_003535310.1|	-	0.0059	16.5	18.1	0.54	10.2	0.2	3.1	1	1	2	3	3	3	1	Golgi	transport	complex	subunit	5
Uds1	PF15456.1	gi|292655413|ref|YP_003535310.1|	-	0.0064	16.4	25.8	0.097	12.6	12.0	2.7	1	1	1	2	2	2	1	Up-regulated	During	Septation
Ax_dynein_light	PF10211.4	gi|292655413|ref|YP_003535310.1|	-	0.0065	16.3	8.3	0.0065	16.3	5.8	3.3	1	1	3	4	4	4	2	Axonemal	dynein	light	chain
DUF724	PF05266.9	gi|292655413|ref|YP_003535310.1|	-	0.007	16.0	16.7	0.055	13.0	5.0	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF724)
CCDC155	PF14662.1	gi|292655413|ref|YP_003535310.1|	-	0.0073	15.9	30.6	0.01	15.4	15.0	2.2	1	1	1	2	2	2	1	Coiled-coil	region	of	CCDC155
Hemerythrin	PF01814.18	gi|292655413|ref|YP_003535310.1|	-	0.0083	16.2	10.3	0.83	9.8	1.4	3.0	1	1	1	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
Mnd1	PF03962.10	gi|292655413|ref|YP_003535310.1|	-	0.0091	15.6	24.3	50	3.4	16.9	2.8	1	1	0	1	1	1	0	Mnd1	family
DivIVA	PF05103.8	gi|292655413|ref|YP_003535310.1|	-	0.0092	16.0	24.3	0.42	10.6	2.1	3.2	1	1	1	2	2	2	1	DivIVA	protein
SlyX	PF04102.7	gi|292655413|ref|YP_003535310.1|	-	0.0094	16.2	5.5	0.0094	16.2	3.8	3.8	1	1	1	2	2	1	1	SlyX
XhlA	PF10779.4	gi|292655413|ref|YP_003535310.1|	-	0.0099	15.7	7.4	0.0099	15.7	5.1	3.3	1	1	1	2	2	1	1	Haemolysin	XhlA
TarH	PF02203.10	gi|292655413|ref|YP_003535310.1|	-	0.013	15.3	4.7	0.013	15.3	3.3	2.3	1	1	1	2	2	2	0	Tar	ligand	binding	domain	homologue
DUF948	PF06103.6	gi|292655413|ref|YP_003535310.1|	-	0.013	15.3	12.7	16	5.4	6.4	3.4	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF1049	PF06305.6	gi|292655413|ref|YP_003535310.1|	-	0.014	14.8	10.9	0.31	10.5	0.0	5.0	3	1	3	6	6	5	0	Protein	of	unknown	function	(DUF1049)
DUF812	PF05667.6	gi|292655413|ref|YP_003535310.1|	-	0.015	13.8	23.4	0.16	10.4	7.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
DUF4407	PF14362.1	gi|292655413|ref|YP_003535310.1|	-	0.018	14.0	22.9	0.12	11.3	0.5	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
MCPsignal	PF00015.16	gi|292655413|ref|YP_003535310.1|	-	0.018	14.5	11.8	0.0094	15.5	5.6	1.8	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TMF_TATA_bd	PF12325.3	gi|292655413|ref|YP_003535310.1|	-	0.019	14.7	30.0	0.25	11.0	7.4	3.1	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
MAD	PF05557.8	gi|292655413|ref|YP_003535310.1|	-	0.02	12.9	27.9	0.036	12.1	17.2	2.0	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
FemAB	PF02388.11	gi|292655413|ref|YP_003535310.1|	-	0.021	13.5	14.0	0.059	12.0	2.0	2.1	1	1	1	2	2	2	0	FemAB	family
Sec8_exocyst	PF04048.9	gi|292655413|ref|YP_003535310.1|	-	0.021	14.4	16.3	14	5.3	10.3	3.3	1	1	1	2	2	1	0	Sec8	exocyst	complex	component	specific	domain
4HB_MCP_1	PF12729.2	gi|292655413|ref|YP_003535310.1|	-	0.022	14.1	13.9	0.23	10.7	0.5	2.7	1	1	1	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
Fez1	PF06818.10	gi|292655413|ref|YP_003535310.1|	-	0.023	14.7	24.6	0.052	13.5	17.0	1.6	1	1	0	1	1	1	0	Fez1
Tektin	PF03148.9	gi|292655413|ref|YP_003535310.1|	-	0.026	13.1	25.7	0.023	13.2	3.3	2.8	1	1	2	3	3	3	0	Tektin	family
bZIP_2	PF07716.10	gi|292655413|ref|YP_003535310.1|	-	0.027	14.2	32.2	0.059	13.1	0.6	5.5	2	2	4	6	6	5	0	Basic	region	leucine	zipper
DUF4600	PF15372.1	gi|292655413|ref|YP_003535310.1|	-	0.028	14.6	23.1	1.2	9.3	0.5	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4600)
Jnk-SapK_ap_N	PF09744.4	gi|292655413|ref|YP_003535310.1|	-	0.03	14.3	24.7	0.31	11.0	4.8	2.2	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
THOC7	PF05615.8	gi|292655413|ref|YP_003535310.1|	-	0.03	14.5	26.0	0.28	11.4	4.4	3.0	1	1	2	3	3	3	0	Tho	complex	subunit	7
CASP_C	PF08172.7	gi|292655413|ref|YP_003535310.1|	-	0.033	13.2	31.8	0.58	9.1	4.1	3.1	1	1	1	2	2	2	0	CASP	C	terminal
PilJ	PF13675.1	gi|292655413|ref|YP_003535310.1|	-	0.036	14.3	19.2	0.059	13.6	3.2	2.5	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
ALIX_LYPXL_bnd	PF13949.1	gi|292655413|ref|YP_003535310.1|	-	0.038	12.9	29.9	0.086	11.7	14.6	2.0	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
FUSC	PF04632.7	gi|292655413|ref|YP_003535310.1|	-	0.04	12.3	19.8	0.11	10.9	13.6	1.5	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF2580	PF10824.3	gi|292655413|ref|YP_003535310.1|	-	0.04	14.2	7.8	0.48	10.8	0.1	3.4	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF2580)
Med4	PF10018.4	gi|292655413|ref|YP_003535310.1|	-	0.043	13.2	26.3	0.42	9.9	4.5	3.5	1	1	3	4	4	4	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Snapin_Pallidin	PF14712.1	gi|292655413|ref|YP_003535310.1|	-	0.046	14.0	21.2	0.076	13.3	3.5	3.3	1	1	1	3	3	3	0	Snapin/Pallidin
Fmp27_WPPW	PF10359.4	gi|292655413|ref|YP_003535310.1|	-	0.059	11.7	24.7	0.018	13.5	3.7	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
YscO	PF07321.7	gi|292655413|ref|YP_003535310.1|	-	0.061	13.1	25.5	0.21	11.4	3.1	3.4	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
DUF2730	PF10805.3	gi|292655413|ref|YP_003535310.1|	-	0.064	12.9	15.6	0.17	11.6	1.9	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2730)
Phage_GP20	PF06810.6	gi|292655413|ref|YP_003535310.1|	-	0.066	12.6	23.5	0.15	11.5	9.5	2.9	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
Spectrin	PF00435.16	gi|292655413|ref|YP_003535310.1|	-	0.07	13.4	22.8	0.18	12.0	9.4	2.3	1	1	1	2	2	2	0	Spectrin	repeat
GrpE	PF01025.14	gi|292655413|ref|YP_003535310.1|	-	0.072	12.6	24.6	0.077	12.5	1.5	3.3	1	1	2	3	3	3	0	GrpE
DUF3086	PF11285.3	gi|292655413|ref|YP_003535310.1|	-	0.086	11.6	18.2	0.12	11.2	0.2	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3086)
CALCOCO1	PF07888.6	gi|292655413|ref|YP_003535310.1|	-	0.093	11.0	26.6	0.017	13.4	10.2	1.9	1	1	1	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
TMCO5	PF14992.1	gi|292655413|ref|YP_003535310.1|	-	0.098	11.7	20.7	0.16	11.0	14.3	1.3	1	0	0	1	1	1	0	TMCO5	family
Tho2	PF11262.3	gi|292655413|ref|YP_003535310.1|	-	0.12	11.3	13.5	2	7.3	2.5	2.3	1	1	1	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
DegS	PF05384.6	gi|292655413|ref|YP_003535310.1|	-	0.12	11.5	21.5	0.53	9.4	2.9	2.9	1	1	0	2	2	2	0	Sensor	protein	DegS
DUF745	PF05335.8	gi|292655413|ref|YP_003535310.1|	-	0.13	11.8	15.7	0.063	12.7	6.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
Sirohm_synth_C	PF14823.1	gi|292655413|ref|YP_003535310.1|	-	0.13	11.6	1.6	13	5.1	0.1	3.3	3	0	0	3	3	3	0	Sirohaem	biosynthesis	protein	C-terminal
Nup54	PF13874.1	gi|292655413|ref|YP_003535310.1|	-	0.13	11.9	20.9	0.51	9.9	7.6	2.2	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
DUF4062	PF13271.1	gi|292655413|ref|YP_003535310.1|	-	0.14	12.2	6.8	1	9.3	0.2	2.8	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4062)
zf-C4H2	PF10146.4	gi|292655413|ref|YP_003535310.1|	-	0.16	11.9	16.6	0.038	14.0	7.7	1.9	1	1	1	2	2	2	0	Zinc	finger-containing	protein
Transcrip_act	PF04949.8	gi|292655413|ref|YP_003535310.1|	-	0.18	11.4	11.3	0.2	11.2	4.1	2.1	1	1	1	2	2	2	0	Transcriptional	activator
Sipho_Gp157	PF05565.6	gi|292655413|ref|YP_003535310.1|	-	0.19	11.3	13.3	0.61	9.6	3.7	3.0	1	1	2	3	3	3	0	Siphovirus	Gp157
Prominin	PF05478.6	gi|292655413|ref|YP_003535310.1|	-	0.2	9.1	17.6	0.59	7.5	6.8	2.4	1	1	1	2	2	2	0	Prominin
T2SM	PF04612.7	gi|292655413|ref|YP_003535310.1|	-	0.21	11.3	12.4	0.8	9.4	1.3	3.2	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
BicD	PF09730.4	gi|292655413|ref|YP_003535310.1|	-	0.22	9.8	26.4	0.93	7.7	18.3	1.8	1	1	0	1	1	1	0	Microtubule-associated	protein	Bicaudal-D
TMPIT	PF07851.8	gi|292655413|ref|YP_003535310.1|	-	0.22	10.5	13.0	0.071	12.1	4.6	2.2	1	1	2	3	3	3	0	TMPIT-like	protein
Syntaxin-6_N	PF09177.6	gi|292655413|ref|YP_003535310.1|	-	0.27	11.6	25.9	13	6.3	7.5	3.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
TBCA	PF02970.11	gi|292655413|ref|YP_003535310.1|	-	0.3	11.1	18.4	0.11	12.5	2.9	3.4	1	1	2	3	3	3	0	Tubulin	binding	cofactor	A
AATF-Che1	PF13339.1	gi|292655413|ref|YP_003535310.1|	-	0.3	11.2	22.0	2.2	8.4	0.6	3.0	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
Striatin	PF08232.7	gi|292655413|ref|YP_003535310.1|	-	0.31	11.3	21.5	0.75	10.1	4.3	2.6	1	1	1	2	2	2	0	Striatin	family
DUF2203	PF09969.4	gi|292655413|ref|YP_003535310.1|	-	0.31	11.2	11.0	0.24	11.6	1.5	2.5	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
FliD_N	PF02465.13	gi|292655413|ref|YP_003535310.1|	-	0.33	11.3	14.5	11	6.5	3.3	3.3	1	1	2	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
RmuC	PF02646.11	gi|292655413|ref|YP_003535310.1|	-	0.34	9.7	17.6	1.9	7.2	2.1	2.8	1	1	0	2	2	2	0	RmuC	family
DUF2681	PF10883.3	gi|292655413|ref|YP_003535310.1|	-	0.36	11.0	5.8	1.8	8.8	0.1	2.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2681)
DUF641	PF04859.7	gi|292655413|ref|YP_003535310.1|	-	0.37	10.5	16.0	0.42	10.3	3.7	2.9	1	1	3	4	4	4	0	Plant	protein	of	unknown	function	(DUF641)
HOOK	PF05622.7	gi|292655413|ref|YP_003535310.1|	-	0.38	8.4	30.1	8.1	4.1	20.4	1.9	1	1	0	1	1	1	0	HOOK	protein
OEP	PF02321.13	gi|292655413|ref|YP_003535310.1|	-	0.4	10.2	26.8	0.4	10.2	9.5	2.4	1	1	1	2	2	2	0	Outer	membrane	efflux	protein
CCDC144C	PF14915.1	gi|292655413|ref|YP_003535310.1|	-	0.4	9.5	27.2	0.48	9.2	10.8	2.1	1	1	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
YlqD	PF11068.3	gi|292655413|ref|YP_003535310.1|	-	0.4	10.7	20.1	0.68	9.9	2.8	3.1	1	1	2	3	3	3	0	YlqD	protein
DUF3407	PF11887.3	gi|292655413|ref|YP_003535310.1|	-	0.42	9.8	9.0	0.35	10.1	4.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3407)
RasGAP_C	PF03836.10	gi|292655413|ref|YP_003535310.1|	-	0.43	10.2	15.8	4.4	7.0	2.1	3.5	1	1	2	3	3	3	0	RasGAP	C-terminus
TMP_2	PF06791.8	gi|292655413|ref|YP_003535310.1|	-	0.45	10.1	2.4	0.65	9.5	0.4	1.9	1	1	1	2	2	2	0	Prophage	tail	length	tape	measure	protein
Val_tRNA-synt_C	PF10458.4	gi|292655413|ref|YP_003535310.1|	-	0.48	10.5	16.4	0.61	10.2	0.1	4.6	2	2	2	4	4	4	0	Valyl	tRNA	synthetase	tRNA	binding	arm
IFP_35_N	PF07334.8	gi|292655413|ref|YP_003535310.1|	-	0.54	10.2	0.0	0.54	10.2	0.0	3.9	4	0	0	4	4	3	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
ApoO	PF09769.4	gi|292655413|ref|YP_003535310.1|	-	0.54	9.9	8.1	6.2	6.4	2.1	2.5	1	1	1	2	2	2	0	Apolipoprotein	O
UPF0449	PF15136.1	gi|292655413|ref|YP_003535310.1|	-	0.56	10.4	20.8	2.9	8.1	1.6	4.2	1	1	3	4	4	4	0	Uncharacterised	protein	family	UPF0449
Sec2p	PF06428.6	gi|292655413|ref|YP_003535310.1|	-	0.57	10.0	24.4	2.3e+02	1.7	6.2	3.7	1	1	1	2	2	1	0	GDP/GTP	exchange	factor	Sec2p
DUF2130	PF09903.4	gi|292655413|ref|YP_003535310.1|	-	0.57	8.8	10.6	0.69	8.6	1.5	2.5	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
AF0941-like	PF14591.1	gi|292655413|ref|YP_003535310.1|	-	0.62	10.1	10.0	2.8	8.0	5.6	2.7	1	1	3	4	4	4	0	AF0941-like
DUF1409	PF07197.7	gi|292655413|ref|YP_003535310.1|	-	0.63	10.1	12.9	3.8	7.6	0.6	4.0	3	1	1	4	4	3	0	Protein	of	unknown	function	(DUF1409)
FliD_C	PF07195.7	gi|292655413|ref|YP_003535310.1|	-	0.64	9.2	19.7	38	3.4	8.4	3.2	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Streptin-Immun	PF11083.3	gi|292655413|ref|YP_003535310.1|	-	0.65	10.0	13.2	4	7.4	1.5	3.4	1	1	1	2	2	2	0	Lantibiotic	streptin	immunity	protein
Macoilin	PF09726.4	gi|292655413|ref|YP_003535310.1|	-	0.72	8.0	18.5	0.96	7.6	12.9	1.1	1	0	0	1	1	1	0	Transmembrane	protein
HAUS6_N	PF14661.1	gi|292655413|ref|YP_003535310.1|	-	0.72	9.1	19.6	0.17	11.2	6.7	2.1	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
MT	PF12777.2	gi|292655413|ref|YP_003535310.1|	-	0.74	8.5	5.4	1.6	7.4	1.6	2.5	1	1	1	2	2	2	0	Microtubule-binding	stalk	of	dynein	motor
HAP1_N	PF04849.8	gi|292655413|ref|YP_003535310.1|	-	0.78	8.6	27.5	5.2	5.9	10.5	2.1	1	1	1	2	2	2	0	HAP1	N-terminal	conserved	region
PMEI	PF04043.10	gi|292655413|ref|YP_003535310.1|	-	0.8	9.6	8.9	4.8	7.0	6.2	2.0	1	1	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
Cluap1	PF10234.4	gi|292655413|ref|YP_003535310.1|	-	0.83	8.8	21.2	3.9	6.5	8.3	2.5	1	1	1	2	2	2	0	Clusterin-associated	protein-1
HR1	PF02185.11	gi|292655413|ref|YP_003535310.1|	-	0.86	9.3	27.2	1.3	8.8	4.1	3.9	1	1	2	3	3	3	0	Hr1	repeat
Sugarporin_N	PF11471.3	gi|292655413|ref|YP_003535310.1|	-	0.87	9.2	29.7	0.067	12.8	1.1	4.7	2	1	2	4	4	3	0	Maltoporin	periplasmic	N-terminal	extension
Lebercilin	PF15619.1	gi|292655413|ref|YP_003535310.1|	-	0.99	8.7	28.5	1.3	8.4	16.5	2.3	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
RE_Alw26IDE	PF09665.5	gi|292655413|ref|YP_003535310.1|	-	1	8.0	7.9	1.5	7.3	5.5	1.3	1	0	0	1	1	1	0	Type	II	restriction	endonuclease	(RE_Alw26IDE)
Transposase_22	PF02994.9	gi|292655413|ref|YP_003535310.1|	-	1	7.7	15.0	1.4	7.3	10.4	1.1	1	0	0	1	1	1	0	L1	transposable	element
HlyD	PF00529.15	gi|292655413|ref|YP_003535310.1|	-	1	8.5	26.1	1.5	8.0	9.3	2.1	1	1	1	2	2	2	0	HlyD	family	secretion	protein
DUF2959	PF11172.3	gi|292655413|ref|YP_003535310.1|	-	1	9.0	14.5	4.7	6.9	4.2	2.9	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2959)
Halogen_Hydrol	PF10112.4	gi|292655413|ref|YP_003535310.1|	-	1.1	8.6	8.8	1.6	8.0	0.1	2.5	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
LXG	PF04740.7	gi|292655413|ref|YP_003535310.1|	-	1.1	8.9	19.6	1.8	8.3	5.4	2.3	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
CtIP_N	PF10482.4	gi|292655413|ref|YP_003535310.1|	-	1.2	8.9	20.0	3.4	7.4	0.7	3.2	1	1	0	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
DUF1192	PF06698.6	gi|292655413|ref|YP_003535310.1|	-	1.2	8.9	14.6	0.68	9.7	0.4	3.8	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF1192)
LPP	PF04728.8	gi|292655413|ref|YP_003535310.1|	-	1.3	8.9	9.4	0.17	11.6	1.0	3.2	1	1	3	4	4	2	0	Lipoprotein	leucine-zipper
Sulfatase_C	PF14707.1	gi|292655413|ref|YP_003535310.1|	-	1.3	9.3	3.3	36	4.6	0.1	2.7	1	1	2	3	3	2	0	C-terminal	region	of	aryl-sulfatase
Fzo_mitofusin	PF04799.8	gi|292655413|ref|YP_003535310.1|	-	1.3	8.3	18.8	0.87	8.9	2.4	3.3	1	1	3	4	4	4	0	fzo-like	conserved	region
DUF2802	PF10975.3	gi|292655413|ref|YP_003535310.1|	-	1.3	8.8	18.2	3.8	7.3	0.1	4.9	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2802)
Cep57_CLD_2	PF14197.1	gi|292655413|ref|YP_003535310.1|	-	1.3	8.9	43.1	0.1	12.5	9.9	3.8	1	1	2	3	3	1	0	Centrosome	localisation	domain	of	PPC89
DUF2450	PF10475.4	gi|292655413|ref|YP_003535310.1|	-	1.4	7.7	13.5	1.6	7.5	5.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
DUF3373	PF11853.3	gi|292655413|ref|YP_003535310.1|	-	1.4	7.3	14.1	0.62	8.5	2.4	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3373)
RTBV_P46	PF06216.6	gi|292655413|ref|YP_003535310.1|	-	1.4	7.6	12.3	9.3	4.9	0.5	2.9	1	1	1	2	2	2	0	Rice	tungro	bacilliform	virus	P46	protein
Herpes_UL6	PF01763.11	gi|292655413|ref|YP_003535310.1|	-	1.5	6.8	19.3	0.95	7.5	7.7	2.1	1	1	1	2	2	2	0	Herpesvirus	UL6	like
Tup_N	PF08581.5	gi|292655413|ref|YP_003535310.1|	-	1.6	9.0	17.0	9.8	6.4	1.9	3.4	1	1	2	3	3	3	0	Tup	N-terminal
DUF4611	PF15387.1	gi|292655413|ref|YP_003535310.1|	-	1.7	8.8	16.9	1.9	8.7	8.5	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4611)
KLRAQ	PF10205.4	gi|292655413|ref|YP_003535310.1|	-	1.8	8.6	24.8	1.2	9.1	2.9	3.3	1	1	3	4	4	4	0	Predicted	coiled-coil	domain-containing	protein
Occludin_ELL	PF07303.8	gi|292655413|ref|YP_003535310.1|	-	1.8	9.3	14.5	4.9	7.9	1.2	3.7	1	1	2	3	3	3	0	Occludin	homology	domain
Cep57_MT_bd	PF06657.8	gi|292655413|ref|YP_003535310.1|	-	1.8	8.5	23.0	6.3	6.8	0.5	3.3	1	1	2	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
KxDL	PF10241.4	gi|292655413|ref|YP_003535310.1|	-	1.9	8.4	18.4	1	9.3	2.0	3.2	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
Viral_P18	PF04521.8	gi|292655413|ref|YP_003535310.1|	-	2.1	7.8	16.9	3.7	7.0	1.2	3.8	1	1	3	4	4	4	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Phlebovirus_NSM	PF07246.6	gi|292655413|ref|YP_003535310.1|	-	2.2	7.3	15.1	7.8	5.5	5.6	2.8	1	1	0	2	2	2	0	Phlebovirus	nonstructural	protein	NS-M
Dzip-like_N	PF13815.1	gi|292655413|ref|YP_003535310.1|	-	2.3	8.0	22.0	0.86	9.4	1.9	3.3	1	1	2	3	3	3	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
CDC37_N	PF03234.9	gi|292655413|ref|YP_003535310.1|	-	2.5	8.4	17.2	5.4	7.3	11.9	1.6	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
Exonuc_VII_L	PF02601.10	gi|292655413|ref|YP_003535310.1|	-	2.5	7.1	22.3	75	2.3	15.5	2.0	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Golgin_A5	PF09787.4	gi|292655413|ref|YP_003535310.1|	-	2.7	6.4	25.5	0.63	8.4	8.0	2.0	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
HisKA_3	PF07730.8	gi|292655413|ref|YP_003535310.1|	-	2.8	8.3	17.4	4.4	7.7	0.6	3.7	1	1	1	3	3	3	0	Histidine	kinase
DUF4337	PF14235.1	gi|292655413|ref|YP_003535310.1|	-	2.8	7.7	15.4	8.7e+02	-0.4	10.7	2.9	1	1	0	1	1	0	0	Domain	of	unknown	function	(DUF4337)
DUF3508	PF12018.3	gi|292655413|ref|YP_003535310.1|	-	2.8	6.8	11.7	0.5	9.3	2.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3508)
Prp19	PF08606.6	gi|292655413|ref|YP_003535310.1|	-	2.8	7.7	10.7	2.6	7.8	0.1	3.5	2	1	1	3	3	3	0	Prp19/Pso4-like
DUF4164	PF13747.1	gi|292655413|ref|YP_003535310.1|	-	2.9	8.0	34.6	0.046	13.8	10.4	3.0	1	1	2	3	3	2	0	Domain	of	unknown	function	(DUF4164)
Cauli_AT	PF03233.8	gi|292655413|ref|YP_003535310.1|	-	3	7.5	10.7	4.2	7.0	5.8	1.9	1	1	1	2	2	2	0	Aphid	transmission	protein
DUF2935	PF11155.3	gi|292655413|ref|YP_003535310.1|	-	3	7.9	7.4	2e+02	2.0	5.1	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
HAUS-augmin3	PF14932.1	gi|292655413|ref|YP_003535310.1|	-	3.1	6.9	26.1	2.5e+02	0.6	18.0	2.0	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
NTR2	PF15458.1	gi|292655413|ref|YP_003535310.1|	-	3.2	6.9	30.6	0.072	12.3	3.2	3.7	1	1	1	2	2	1	0	Nineteen	complex-related	protein	2
Nnf1	PF03980.9	gi|292655413|ref|YP_003535310.1|	-	3.2	7.7	25.9	3.1	7.8	0.5	4.3	1	1	3	4	4	3	0	Nnf1
DUF3391	PF11871.3	gi|292655413|ref|YP_003535310.1|	-	3.3	7.9	10.0	14	5.8	0.4	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF3391)
Init_tRNA_PT	PF04179.7	gi|292655413|ref|YP_003535310.1|	-	3.4	6.4	9.8	5.9	5.6	6.6	1.5	1	1	1	2	2	1	0	Initiator	tRNA	phosphoribosyl	transferase
Phage_GPO	PF05929.6	gi|292655413|ref|YP_003535310.1|	-	3.5	6.7	21.5	6.9	5.8	4.7	2.7	1	1	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Baculo_p24	PF05073.7	gi|292655413|ref|YP_003535310.1|	-	3.9	6.9	13.4	97	2.4	9.3	2.6	1	1	0	1	1	1	0	Baculovirus	P24	capsid	protein
DUF848	PF05852.6	gi|292655413|ref|YP_003535310.1|	-	3.9	7.2	26.2	8.6	6.1	7.6	2.8	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
SseC	PF04888.7	gi|292655413|ref|YP_003535310.1|	-	4.1	6.6	9.2	0.4	9.9	0.2	2.3	1	1	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
Sec20	PF03908.8	gi|292655413|ref|YP_003535310.1|	-	4.3	7.0	16.5	14	5.4	3.3	3.4	1	1	2	3	3	3	0	Sec20
DUF1843	PF08898.5	gi|292655413|ref|YP_003535310.1|	-	4.4	7.4	12.7	0.25	11.4	0.4	3.9	2	1	2	4	4	3	0	Domain	of	unknown	function	(DUF1843)
Erp_C	PF06780.6	gi|292655413|ref|YP_003535310.1|	-	4.8	7.0	20.2	17	5.2	2.7	3.2	1	1	2	3	3	2	0	Erp	protein	C-terminus
EMP24_GP25L	PF01105.19	gi|292655413|ref|YP_003535310.1|	-	4.8	6.8	24.9	0.14	11.8	0.6	3.7	1	1	1	2	2	1	0	emp24/gp25L/p24	family/GOLD
UPF0242	PF06785.6	gi|292655413|ref|YP_003535310.1|	-	4.9	5.7	20.0	4.6	5.8	7.3	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)
Vac_Fusion	PF02346.11	gi|292655413|ref|YP_003535310.1|	-	5	6.6	9.1	1.6	8.1	1.1	3.3	1	1	3	4	4	2	0	Chordopoxvirus	fusion	protein
RapA_C	PF12137.3	gi|292655413|ref|YP_003535310.1|	-	5.2	5.8	16.7	3.8	6.2	9.6	2.0	1	1	1	2	2	2	0	RNA	polymerase	recycling	family	C-terminal
DUF3186	PF11382.3	gi|292655413|ref|YP_003535310.1|	-	5.5	6.0	26.7	3.6	6.6	4.1	3.9	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3186)
DUF1510	PF07423.6	gi|292655413|ref|YP_003535310.1|	-	5.6	6.2	14.5	81	2.4	10.1	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Ly49	PF08391.5	gi|292655413|ref|YP_003535310.1|	-	5.8	7.0	12.0	0.94	9.6	0.9	2.7	1	1	2	3	3	3	0	Ly49-like	protein,	N-terminal	region
Gp58	PF07902.6	gi|292655413|ref|YP_003535310.1|	-	6	4.9	13.3	7.1	4.7	5.9	2.0	1	1	1	2	2	2	0	gp58-like	protein
DUF883	PF05957.8	gi|292655413|ref|YP_003535310.1|	-	6.6	7.2	20.5	2.3	8.6	1.1	3.4	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Swi5	PF07061.6	gi|292655413|ref|YP_003535310.1|	-	6.6	6.5	17.1	3.2	7.5	0.2	4.0	1	1	3	4	4	4	0	Swi5
DUF1043	PF06295.7	gi|292655413|ref|YP_003535310.1|	-	6.9	6.3	9.4	28	4.3	0.2	2.9	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1043)
YvrJ	PF12841.2	gi|292655413|ref|YP_003535310.1|	-	6.9	6.0	5.5	28	4.1	0.1	3.3	3	0	0	3	3	2	0	YvrJ	protein	family
Tweety	PF04906.8	gi|292655413|ref|YP_003535310.1|	-	6.9	4.9	8.9	0.89	7.8	2.7	1.9	1	1	1	2	2	2	0	Tweety
Troponin	PF00992.15	gi|292655413|ref|YP_003535310.1|	-	7.2	6.6	22.2	2.4	8.2	6.3	2.4	1	1	1	2	2	2	0	Troponin
bZIP_Maf	PF03131.12	gi|292655413|ref|YP_003535310.1|	-	7.5	6.9	27.6	3.2	8.0	3.6	3.9	1	1	2	3	3	2	0	bZIP	Maf	transcription	factor
Hemagglutinin	PF00509.13	gi|292655413|ref|YP_003535310.1|	-	7.7	4.5	9.7	11	4.0	5.9	1.7	1	1	1	2	2	2	0	Haemagglutinin
PHTB1_C	PF14728.1	gi|292655413|ref|YP_003535310.1|	-	7.8	5.1	12.9	4.4	5.9	3.3	2.1	1	1	1	2	2	2	0	PTHB1	C-terminus
SpoIIIAH	PF12685.2	gi|292655413|ref|YP_003535310.1|	-	7.8	5.9	16.3	13	5.2	11.3	1.3	1	1	0	1	1	1	0	SpoIIIAH-like	protein
YjcZ	PF13990.1	gi|292655413|ref|YP_003535310.1|	-	7.8	5.5	13.4	5.3	6.0	5.8	2.2	1	1	1	2	2	2	0	YjcZ-like	protein
Adeno_PIX	PF03955.9	gi|292655413|ref|YP_003535310.1|	-	7.9	7.0	16.5	5.4e+02	1.1	5.6	3.4	1	1	1	2	2	1	0	Adenovirus	hexon-associated	protein	(IX)
FimP	PF09766.4	gi|292655413|ref|YP_003535310.1|	-	8.3	5.3	18.8	1.2e+02	1.5	13.1	2.4	1	1	0	1	1	1	0	Fms-interacting	protein
AbiH	PF14253.1	gi|292655413|ref|YP_003535310.1|	-	9.3	5.7	13.5	2.2	7.7	1.7	2.0	1	1	1	2	2	2	0	Bacteriophage	abortive	infection	AbiH
VWA_2	PF13519.1	gi|292655414|ref|YP_003535311.1|	-	2.9e-28	99.1	17.5	4.9e-25	88.6	0.1	4.3	3	1	0	3	3	3	2	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|292655414|ref|YP_003535311.1|	-	9.2e-19	67.8	1.1	9e-15	54.8	0.0	2.8	3	0	0	3	3	3	2	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|292655414|ref|YP_003535311.1|	-	1.7e-15	57.0	0.1	2.9e-14	53.0	0.0	2.5	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|292655414|ref|YP_003535311.1|	-	8.7e-09	34.8	3.1	1.8e-06	27.2	0.0	3.1	2	1	1	3	3	3	2	VWA	domain	containing	CoxE-like	protein
DUF1355	PF07090.6	gi|292655414|ref|YP_003535311.1|	-	3.2e-08	33.1	0.0	6e-08	32.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1355)
DUF4131	PF13567.1	gi|292655414|ref|YP_003535311.1|	-	0.12	11.7	1.7	0.36	10.2	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4131)
BatA	PF07584.6	gi|292655415|ref|YP_003535312.1|	-	2.8e-11	43.4	8.2	2.8e-11	43.4	5.7	1.8	2	0	0	2	2	2	1	Aerotolerance	regulator	N-terminal
VWA_2	PF13519.1	gi|292655415|ref|YP_003535312.1|	-	2.3e-07	31.0	7.3	5.3e-07	29.8	4.3	2.0	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
DUF58	PF01882.13	gi|292655415|ref|YP_003535312.1|	-	0.077	13.1	0.1	0.32	11.1	0.1	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF58
DUF2749	PF10907.3	gi|292655415|ref|YP_003535312.1|	-	0.42	10.5	4.6	12	5.8	0.5	3.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
Na_H_antiporter	PF03553.9	gi|292655416|ref|YP_003535313.1|	-	1e-58	198.8	37.9	2.6e-56	190.9	14.7	2.0	1	1	1	2	2	2	2	Na+/H+	antiporter	family
bPH_2	PF03703.9	gi|292655417|ref|YP_003535314.1|	-	3.2e-14	52.6	0.1	5.2e-14	52.0	0.1	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
UbiA	PF01040.13	gi|292655417|ref|YP_003535314.1|	-	0.013	14.7	0.3	0.015	14.4	0.2	1.1	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
bPH_2	PF03703.9	gi|292655418|ref|YP_003535315.1|	-	1.1e-14	54.1	0.0	1.7e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
AsnC_trans_reg	PF01037.16	gi|292655419|ref|YP_003535316.1|	-	1.1e-17	63.4	1.4	1.4e-17	63.1	0.2	1.7	2	0	0	2	2	2	1	AsnC	family
HTH_24	PF13412.1	gi|292655419|ref|YP_003535316.1|	-	1.4e-07	30.7	0.0	2.7e-07	29.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292655419|ref|YP_003535316.1|	-	5.6e-06	25.7	3.4	8.9e-06	25.1	0.7	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655419|ref|YP_003535316.1|	-	0.00062	19.3	0.1	0.0013	18.3	0.1	1.5	1	0	0	1	1	1	1	MarR	family
FeoC	PF09012.5	gi|292655419|ref|YP_003535316.1|	-	0.0034	17.0	0.0	0.0056	16.3	0.0	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
RPA_C	PF08784.6	gi|292655419|ref|YP_003535316.1|	-	0.008	16.5	0.0	0.024	15.0	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	C	terminal
TrmB	PF01978.14	gi|292655419|ref|YP_003535316.1|	-	0.0088	15.7	0.0	0.015	14.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|292655419|ref|YP_003535316.1|	-	0.016	14.9	0.0	0.033	13.9	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292655419|ref|YP_003535316.1|	-	0.032	14.0	0.2	0.065	13.0	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|292655419|ref|YP_003535316.1|	-	0.049	13.9	0.1	0.16	12.2	0.1	1.8	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF3562	PF12085.3	gi|292655419|ref|YP_003535316.1|	-	0.051	13.4	0.2	0.23	11.3	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3562)
MarR	PF01047.17	gi|292655419|ref|YP_003535316.1|	-	0.051	13.2	0.0	0.088	12.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Aminotran_1_2	PF00155.16	gi|292655420|ref|YP_003535317.1|	-	7.4e-70	235.7	0.0	8.4e-70	235.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|292655420|ref|YP_003535317.1|	-	2e-07	30.4	0.0	3.1e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|292655420|ref|YP_003535317.1|	-	0.00029	19.7	0.0	0.00045	19.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|292655420|ref|YP_003535317.1|	-	0.0052	15.8	0.2	0.012	14.7	0.1	1.5	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Usp	PF00582.21	gi|292655421|ref|YP_003535318.1|	-	3e-31	108.4	3.5	3.5e-31	108.2	2.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
HalX	PF08663.5	gi|292655425|ref|YP_003535322.1|	-	1.4e-19	69.8	5.6	1.4e-19	69.8	3.9	2.0	2	1	0	2	2	2	1	HalX	domain
Response_reg	PF00072.19	gi|292655425|ref|YP_003535322.1|	-	4.3e-18	65.3	0.1	7.9e-18	64.5	0.0	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF834	PF05754.9	gi|292655425|ref|YP_003535322.1|	-	0.17	11.7	0.5	0.67	9.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF834)
MtrG	PF04210.8	gi|292655425|ref|YP_003535322.1|	-	0.24	11.1	0.1	0.24	11.1	0.1	1.9	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Regulator_TrmB	PF11495.3	gi|292655426|ref|YP_003535323.1|	-	2.8e-67	226.1	0.3	3.8e-67	225.7	0.2	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|292655426|ref|YP_003535323.1|	-	4.4e-15	55.1	0.0	8.9e-15	54.1	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.9	gi|292655426|ref|YP_003535323.1|	-	0.0006	19.5	0.0	0.0017	18.1	0.0	1.8	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.2	gi|292655426|ref|YP_003535323.1|	-	0.00092	18.8	0.1	0.0022	17.6	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292655426|ref|YP_003535323.1|	-	0.0085	15.4	0.0	0.034	13.5	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|292655426|ref|YP_003535323.1|	-	0.016	14.8	0.1	0.05	13.1	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292655426|ref|YP_003535323.1|	-	0.032	14.0	0.1	0.12	12.1	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|292655426|ref|YP_003535323.1|	-	0.039	13.6	0.0	0.11	12.2	0.0	1.8	2	0	0	2	2	2	0	MarR	family
HTH_34	PF13601.1	gi|292655426|ref|YP_003535323.1|	-	0.12	12.4	0.0	0.26	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
IMPDH	PF00478.20	gi|292655427|ref|YP_003535324.1|	-	3.4e-131	437.3	7.2	3.9e-131	437.1	5.0	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.23	gi|292655427|ref|YP_003535324.1|	-	5.5e-26	90.0	6.5	3e-14	52.5	0.6	2.9	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.10	gi|292655427|ref|YP_003535324.1|	-	5.3e-13	48.8	1.6	4.2e-07	29.4	0.3	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|292655427|ref|YP_003535324.1|	-	4.9e-10	38.8	4.4	9e-10	37.9	3.0	1.4	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
DHO_dh	PF01180.16	gi|292655427|ref|YP_003535324.1|	-	0.00012	21.1	1.4	0.00025	20.1	1.0	1.5	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
ThiG	PF05690.9	gi|292655427|ref|YP_003535324.1|	-	0.00019	20.6	1.3	0.00019	20.6	0.9	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Glu_synthase	PF01645.12	gi|292655427|ref|YP_003535324.1|	-	0.00033	19.7	3.9	0.00062	18.7	2.7	1.4	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
His_biosynth	PF00977.16	gi|292655427|ref|YP_003535324.1|	-	0.00041	19.7	2.4	0.00087	18.6	1.6	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|292655427|ref|YP_003535324.1|	-	0.0011	17.8	0.1	0.0026	16.6	0.1	1.5	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|292655427|ref|YP_003535324.1|	-	0.0035	16.6	4.4	0.017	14.3	0.3	2.9	2	0	0	2	2	2	1	PcrB	family
PEP_mutase	PF13714.1	gi|292655427|ref|YP_003535324.1|	-	0.056	12.6	4.6	0.24	10.5	0.1	3.0	3	0	0	3	3	3	0	Phosphoenolpyruvate	phosphomutase
Methyltransf_24	PF13578.1	gi|292655427|ref|YP_003535324.1|	-	0.081	13.7	0.4	0.18	12.6	0.3	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0047	PF01894.12	gi|292655430|ref|YP_003535327.1|	-	8e-33	112.7	0.0	1e-32	112.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Elf1	PF05129.8	gi|292655431|ref|YP_003535328.1|	-	0.0089	15.6	0.4	0.015	14.9	0.3	1.4	1	1	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS1595	PF12760.2	gi|292655431|ref|YP_003535328.1|	-	0.029	14.1	0.7	0.052	13.3	0.5	1.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF1_Zn_bind	PF09416.5	gi|292655431|ref|YP_003535328.1|	-	0.031	13.8	0.0	0.031	13.8	0.0	1.2	1	0	0	1	1	1	0	RNA	helicase	(UPF2	interacting	domain)
Zn-ribbon_8	PF09723.5	gi|292655431|ref|YP_003535328.1|	-	0.034	14.0	2.2	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|292655431|ref|YP_003535328.1|	-	0.039	13.1	0.5	0.3	10.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292655431|ref|YP_003535328.1|	-	0.058	13.2	0.7	0.1	12.4	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF1610	PF07754.6	gi|292655431|ref|YP_003535328.1|	-	0.081	13.0	0.4	0.081	13.0	0.2	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zf-Mss51	PF13824.1	gi|292655431|ref|YP_003535328.1|	-	0.084	12.7	1.0	1.5	8.7	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
C1_3	PF07649.7	gi|292655431|ref|YP_003535328.1|	-	0.086	12.8	0.6	2.9	8.0	0.1	2.1	2	0	0	2	2	2	0	C1-like	domain
UPF0547	PF10571.4	gi|292655431|ref|YP_003535328.1|	-	0.13	11.9	1.0	0.29	10.8	0.7	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|292655431|ref|YP_003535328.1|	-	0.19	11.4	1.7	0.37	10.4	1.2	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.14	gi|292655431|ref|YP_003535328.1|	-	0.29	10.6	1.9	0.4	10.2	0.1	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Rubredoxin	PF00301.15	gi|292655431|ref|YP_003535328.1|	-	0.36	10.7	4.0	5.8	6.8	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin
DHFR_1	PF00186.14	gi|292655434|ref|YP_003535331.1|	-	5.2e-38	130.1	0.0	5.7e-38	130.0	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
MFS_1	PF07690.11	gi|292655435|ref|YP_003535332.1|	-	4.6e-55	186.7	48.8	7.2e-29	100.5	10.6	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|292655435|ref|YP_003535332.1|	-	5.7e-13	48.2	26.4	8e-09	34.5	4.5	2.5	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_2	PF13347.1	gi|292655435|ref|YP_003535332.1|	-	2.3e-10	39.4	21.4	3.1e-10	39.0	14.9	1.2	1	0	0	1	1	1	1	MFS/sugar	transport	protein
MFS_3	PF05977.8	gi|292655435|ref|YP_003535332.1|	-	0.00027	19.1	23.3	0.014	13.5	3.4	2.6	2	1	0	2	2	2	2	Transmembrane	secretion	effector
MFS_1_like	PF12832.2	gi|292655435|ref|YP_003535332.1|	-	0.015	15.0	0.0	0.082	12.7	0.0	2.2	2	0	0	2	2	2	0	MFS_1	like	family
TRI12	PF06609.8	gi|292655435|ref|YP_003535332.1|	-	1.5	6.9	12.3	0.039	12.1	1.2	2.6	2	1	1	3	3	3	0	Fungal	trichothecene	efflux	pump	(TRI12)
OATP	PF03137.15	gi|292655435|ref|YP_003535332.1|	-	1.9	6.4	11.2	1	7.3	2.7	2.2	2	0	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF4212	PF13937.1	gi|292655435|ref|YP_003535332.1|	-	3.8	7.5	6.1	1.9	8.5	0.1	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4212)
Glycos_transf_1	PF00534.15	gi|292655436|ref|YP_003535333.1|	-	4.8e-37	127.0	0.0	1.3e-36	125.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|292655436|ref|YP_003535333.1|	-	8.3e-17	61.6	0.2	2e-16	60.3	0.1	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|292655436|ref|YP_003535333.1|	-	1.1e-11	44.8	0.1	7.2e-11	42.2	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292655436|ref|YP_003535333.1|	-	2.4e-07	31.0	9.6	2.4e-07	31.0	6.7	2.9	2	2	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|292655436|ref|YP_003535333.1|	-	4.1e-06	26.6	1.1	1.1e-05	25.2	0.7	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
B12-binding	PF02310.14	gi|292655436|ref|YP_003535333.1|	-	0.12	12.2	0.5	1.1	9.1	0.1	2.5	2	1	0	2	2	2	0	B12	binding	domain
PTPS	PF01242.14	gi|292655437|ref|YP_003535334.1|	-	4.2e-21	74.8	0.0	4.6e-21	74.7	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Uricase	PF01014.13	gi|292655437|ref|YP_003535334.1|	-	0.022	14.8	0.0	0.028	14.5	0.0	1.3	1	0	0	1	1	1	0	Uricase
ADH_zinc_N	PF00107.21	gi|292655438|ref|YP_003535335.1|	-	3.7e-11	42.6	0.0	6.8e-11	41.8	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|292655438|ref|YP_003535335.1|	-	0.0028	17.4	0.0	0.0068	16.1	0.0	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|292655438|ref|YP_003535335.1|	-	0.0032	18.3	0.0	0.0067	17.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
GGDN	PF05165.7	gi|292655439|ref|YP_003535336.1|	-	9e-86	286.9	0.5	1.2e-85	286.5	0.3	1.0	1	0	0	1	1	1	1	GGDN	family
ELF	PF03317.8	gi|292655439|ref|YP_003535336.1|	-	0.13	11.5	0.1	0.23	10.7	0.1	1.4	1	1	0	1	1	1	0	ELF	protein
ABC2_membrane_2	PF12679.2	gi|292655440|ref|YP_003535337.1|	-	0.22	10.3	6.7	0.24	10.2	4.7	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Bap31	PF05529.7	gi|292655440|ref|YP_003535337.1|	-	0.31	10.4	1.1	0.33	10.3	0.8	1.1	1	0	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
DUF677	PF05055.7	gi|292655440|ref|YP_003535337.1|	-	1.7	7.2	4.5	1.8	7.1	3.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Hydrolase_6	PF13344.1	gi|292655441|ref|YP_003535338.1|	-	2.9e-24	84.8	0.0	4.6e-24	84.2	0.0	1.3	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292655441|ref|YP_003535338.1|	-	1.2e-18	66.6	0.2	1.2e-18	66.6	0.1	2.1	3	0	0	3	3	3	1	HAD-hyrolase-like
HAD_2	PF13419.1	gi|292655441|ref|YP_003535338.1|	-	1.6e-10	41.4	0.4	2.1e-05	24.8	0.0	3.2	2	1	1	3	3	3	3	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292655441|ref|YP_003535338.1|	-	1.3e-09	38.7	1.4	3.3e-09	37.4	1.0	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.5	gi|292655441|ref|YP_003535338.1|	-	0.008	15.5	0.0	0.043	13.1	0.0	2.0	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
DJ-1_PfpI	PF01965.19	gi|292655442|ref|YP_003535339.1|	-	1.6e-37	128.1	0.0	2e-37	127.9	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|292655442|ref|YP_003535339.1|	-	2e-11	43.4	0.0	3.1e-11	42.8	0.0	1.3	1	1	0	1	1	1	1	Putative	amidotransferase
GATase_3	PF07685.9	gi|292655442|ref|YP_003535339.1|	-	7e-05	22.4	0.0	0.00061	19.4	0.0	2.0	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|292655442|ref|YP_003535339.1|	-	9.4e-05	21.9	0.0	0.00013	21.5	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_5	PF13507.1	gi|292655442|ref|YP_003535339.1|	-	0.032	13.1	0.0	0.043	12.7	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
SnoaL_3	PF13474.1	gi|292655442|ref|YP_003535339.1|	-	0.036	14.0	0.0	0.057	13.4	0.0	1.3	1	0	0	1	1	1	0	SnoaL-like	domain
Glyco_trans_4_4	PF13579.1	gi|292655442|ref|YP_003535339.1|	-	0.13	12.3	1.9	1.1	9.3	1.2	2.1	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Peptidase_C26	PF07722.8	gi|292655442|ref|YP_003535339.1|	-	0.14	11.5	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	Peptidase	C26
OsmC	PF02566.14	gi|292655444|ref|YP_003535341.1|	-	1.6e-14	53.9	0.0	2e-14	53.5	0.0	1.1	1	0	0	1	1	1	1	OsmC-like	protein
Lactamase_B_3	PF13483.1	gi|292655445|ref|YP_003535342.1|	-	2.4e-20	72.8	0.4	3.2e-20	72.4	0.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|292655445|ref|YP_003535342.1|	-	2.4e-17	63.1	0.7	3e-17	62.7	0.5	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|292655445|ref|YP_003535342.1|	-	4.6e-09	36.2	7.6	6.9e-09	35.6	5.2	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
FAA_hydrolase	PF01557.13	gi|292655446|ref|YP_003535343.1|	-	1.8e-66	223.7	0.3	2.2e-66	223.4	0.2	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF1648	PF07853.6	gi|292655447|ref|YP_003535344.1|	-	2.7e-11	42.7	2.3	2.7e-11	42.7	1.6	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1648)
Gluconate_2-dh3	PF13618.1	gi|292655448|ref|YP_003535345.1|	-	9e-14	51.7	0.0	1.2e-13	51.3	0.0	1.1	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
DUF2059	PF09832.4	gi|292655448|ref|YP_003535345.1|	-	0.013	15.4	0.1	0.048	13.6	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
GMC_oxred_C	PF05199.8	gi|292655449|ref|YP_003535346.1|	-	3.9e-22	79.0	0.4	1.4e-21	77.2	0.2	1.9	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.14	gi|292655449|ref|YP_003535346.1|	-	2.6e-14	53.0	0.0	6.3e-14	51.8	0.0	1.7	1	1	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.19	gi|292655449|ref|YP_003535346.1|	-	4.1e-11	42.3	1.2	7.7e-06	25.0	0.1	2.9	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|292655449|ref|YP_003535346.1|	-	3.3e-09	36.1	1.6	0.0001	21.3	0.4	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|292655449|ref|YP_003535346.1|	-	2.5e-06	26.7	5.0	0.0001	21.4	0.2	2.7	3	0	0	3	3	3	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292655449|ref|YP_003535346.1|	-	7.8e-06	25.8	0.2	2.9e-05	23.9	0.1	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|292655449|ref|YP_003535346.1|	-	2.5e-05	24.2	0.1	0.0019	18.1	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655449|ref|YP_003535346.1|	-	6.3e-05	22.0	0.2	0.0001	21.3	0.2	1.3	1	0	0	1	1	1	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.2	gi|292655449|ref|YP_003535346.1|	-	0.00066	18.8	0.9	0.0041	16.2	0.4	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292655449|ref|YP_003535346.1|	-	0.00079	17.9	2.4	0.002	16.6	0.6	1.9	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|292655449|ref|YP_003535346.1|	-	0.0019	17.3	0.1	0.0032	16.5	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
ApbA	PF02558.11	gi|292655449|ref|YP_003535346.1|	-	0.0083	15.5	0.3	0.027	13.9	0.0	1.9	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_3	PF13738.1	gi|292655449|ref|YP_003535346.1|	-	0.014	15.4	0.2	0.038	14.0	0.1	1.7	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_7	PF12838.2	gi|292655449|ref|YP_003535346.1|	-	0.04	14.2	0.4	0.11	12.9	0.3	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
GIDA	PF01134.17	gi|292655449|ref|YP_003535346.1|	-	0.045	12.5	0.3	0.12	11.2	0.1	1.7	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Fer4_8	PF13183.1	gi|292655449|ref|YP_003535346.1|	-	0.059	13.4	0.1	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|292655449|ref|YP_003535346.1|	-	0.077	13.3	0.0	0.16	12.3	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Pyr_redox	PF00070.22	gi|292655449|ref|YP_003535346.1|	-	0.1	13.0	0.4	0.51	10.7	0.1	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|292655449|ref|YP_003535346.1|	-	0.11	12.0	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292655449|ref|YP_003535346.1|	-	0.14	12.4	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Aminotran_1_2	PF00155.16	gi|292655450|ref|YP_003535347.1|	-	8.5e-71	238.7	0.0	9.7e-71	238.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.8	gi|292655450|ref|YP_003535347.1|	-	0.006	15.2	0.0	0.0096	14.6	0.0	1.3	1	0	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.15	gi|292655450|ref|YP_003535347.1|	-	0.0065	14.7	0.0	0.015	13.5	0.0	1.6	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|292655450|ref|YP_003535347.1|	-	0.036	12.8	0.0	2.9	6.5	0.0	2.2	2	0	0	2	2	2	0	Aminotransferase	class-V
Rot1	PF10681.4	gi|292655450|ref|YP_003535347.1|	-	0.08	12.2	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	Chaperone	for	protein-folding	within	the	ER,	fungal
Acetyltransf_6	PF13480.1	gi|292655450|ref|YP_003535347.1|	-	0.11	12.3	1.4	9.7	6.1	0.0	2.3	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
AAA_18	PF13238.1	gi|292655451|ref|YP_003535348.1|	-	1.2e-22	80.6	0.1	1.5e-22	80.2	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292655451|ref|YP_003535348.1|	-	3.1e-16	60.2	1.6	5.3e-16	59.5	0.5	1.7	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|292655451|ref|YP_003535348.1|	-	3.5e-07	30.1	2.0	0.0022	17.8	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|292655451|ref|YP_003535348.1|	-	3e-05	23.6	0.0	6.3e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_28	PF13521.1	gi|292655451|ref|YP_003535348.1|	-	8.7e-05	22.5	0.3	8.7e-05	22.5	0.2	2.2	1	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|292655451|ref|YP_003535348.1|	-	0.00012	22.1	0.0	0.00017	21.7	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|292655451|ref|YP_003535348.1|	-	0.00021	21.2	0.1	0.17	11.7	0.0	2.1	2	0	0	2	2	2	2	Shikimate	kinase
AAA	PF00004.24	gi|292655451|ref|YP_003535348.1|	-	0.00031	20.9	0.0	0.00042	20.5	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|292655451|ref|YP_003535348.1|	-	0.001	18.8	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	NTPase
AAA_16	PF13191.1	gi|292655451|ref|YP_003535348.1|	-	0.0018	18.3	0.3	0.0028	17.6	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|292655451|ref|YP_003535348.1|	-	0.0064	15.6	0.3	0.045	12.8	0.0	2.2	2	1	1	3	3	3	1	Zeta	toxin
ADK	PF00406.17	gi|292655451|ref|YP_003535348.1|	-	0.018	14.9	0.1	3.2	7.6	0.0	2.2	2	0	0	2	2	2	0	Adenylate	kinase
ATP_bind_2	PF03668.10	gi|292655451|ref|YP_003535348.1|	-	0.026	13.6	0.1	0.032	13.3	0.1	1.1	1	0	0	1	1	1	0	P-loop	ATPase	protein	family
KTI12	PF08433.5	gi|292655451|ref|YP_003535348.1|	-	0.028	13.6	0.0	0.037	13.2	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_5	PF07728.9	gi|292655451|ref|YP_003535348.1|	-	0.028	14.1	0.0	0.16	11.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|292655451|ref|YP_003535348.1|	-	0.035	13.5	0.1	0.045	13.1	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|292655451|ref|YP_003535348.1|	-	0.04	12.7	0.1	0.074	11.8	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_24	PF13479.1	gi|292655451|ref|YP_003535348.1|	-	0.041	13.4	0.2	0.35	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|292655451|ref|YP_003535348.1|	-	0.055	13.6	0.0	0.12	12.5	0.0	1.7	2	0	0	2	2	2	0	RNA	helicase
Viral_helicase1	PF01443.13	gi|292655451|ref|YP_003535348.1|	-	0.061	12.8	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
DUF2075	PF09848.4	gi|292655451|ref|YP_003535348.1|	-	0.065	12.1	0.0	0.094	11.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
MobB	PF03205.9	gi|292655451|ref|YP_003535348.1|	-	0.067	12.8	0.1	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MRP	PF09387.5	gi|292655451|ref|YP_003535348.1|	-	0.088	12.5	0.3	0.13	11.9	0.2	1.2	1	0	0	1	1	1	0	Mitochondrial	RNA	binding	protein	MRP
dNK	PF01712.14	gi|292655451|ref|YP_003535348.1|	-	0.092	12.6	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	Deoxynucleoside	kinase
cobW	PF02492.14	gi|292655451|ref|YP_003535348.1|	-	0.12	11.7	0.0	0.57	9.6	0.0	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
CDP-OH_P_transf	PF01066.16	gi|292655452|ref|YP_003535349.1|	-	2.9e-13	49.9	9.1	9.7e-13	48.2	6.3	1.9	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
HATPase_c	PF02518.21	gi|292655453|ref|YP_003535350.1|	-	9.3e-20	70.4	0.0	1.5e-19	69.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|292655453|ref|YP_003535350.1|	-	3.7e-13	49.7	0.0	8.6e-06	26.0	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|292655453|ref|YP_003535350.1|	-	6.2e-13	48.7	3.0	4.1e-07	30.0	0.0	3.5	3	1	1	4	4	4	2	PAS	fold
PAS	PF00989.19	gi|292655453|ref|YP_003535350.1|	-	1.3e-08	34.5	0.0	0.002	17.8	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.1	gi|292655453|ref|YP_003535350.1|	-	3e-07	30.0	0.1	0.001	18.8	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.1	gi|292655453|ref|YP_003535350.1|	-	1.7e-05	24.5	0.2	6.9e-05	22.6	0.1	2.0	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|292655453|ref|YP_003535350.1|	-	0.00078	19.1	0.1	0.0016	18.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|292655453|ref|YP_003535350.1|	-	0.0017	18.4	0.0	0.029	14.4	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
HATPase_c_5	PF14501.1	gi|292655453|ref|YP_003535350.1|	-	0.0028	17.3	0.0	0.0046	16.6	0.0	1.3	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.20	gi|292655453|ref|YP_003535350.1|	-	0.023	14.6	1.1	0.056	13.4	0.7	1.7	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
HTH_3	PF01381.17	gi|292655454|ref|YP_003535351.1|	-	1.4e-11	44.0	1.0	2.2e-11	43.4	0.7	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|292655454|ref|YP_003535351.1|	-	3.5e-10	39.7	0.4	6.5e-10	38.9	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|292655454|ref|YP_003535351.1|	-	1.2e-09	38.2	0.0	2e-09	37.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|292655454|ref|YP_003535351.1|	-	1.9e-06	27.3	0.5	3e-06	26.7	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|292655454|ref|YP_003535351.1|	-	0.011	15.5	0.2	0.019	14.7	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.7	gi|292655454|ref|YP_003535351.1|	-	0.012	15.3	0.6	0.028	14.1	0.4	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
SR-25	PF10500.4	gi|292655454|ref|YP_003535351.1|	-	0.085	12.3	11.6	0.1	12.0	8.1	1.3	1	0	0	1	1	1	0	Nuclear	RNA-splicing-associated	protein
DUF3775	PF12616.3	gi|292655454|ref|YP_003535351.1|	-	0.091	12.5	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3775)
Macoilin	PF09726.4	gi|292655454|ref|YP_003535351.1|	-	0.26	9.5	6.5	0.29	9.3	4.5	1.0	1	0	0	1	1	1	0	Transmembrane	protein
Period_C	PF12114.3	gi|292655454|ref|YP_003535351.1|	-	0.28	10.7	8.8	0.38	10.3	6.1	1.3	1	0	0	1	1	1	0	Period	protein	2/3C-terminal	region
Corona_nucleoca	PF00937.13	gi|292655454|ref|YP_003535351.1|	-	1.2	8.0	6.9	1.3	7.9	4.8	1.1	1	0	0	1	1	1	0	Coronavirus	nucleocapsid	protein
TIM	PF00121.13	gi|292655455|ref|YP_003535352.1|	-	8.5e-21	74.1	0.6	2.4e-18	66.0	0.4	2.0	1	1	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.9	gi|292655455|ref|YP_003535352.1|	-	0.00013	21.1	1.2	0.00013	21.1	0.8	1.9	2	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.16	gi|292655455|ref|YP_003535352.1|	-	0.00085	18.4	0.0	0.0013	17.8	0.0	1.4	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
Hydrolase_like	PF13242.1	gi|292655455|ref|YP_003535352.1|	-	0.0055	16.3	0.8	0.2	11.4	0.1	2.5	2	0	0	2	2	2	1	HAD-hyrolase-like
FMN_dh	PF01070.13	gi|292655455|ref|YP_003535352.1|	-	0.0097	14.7	3.0	0.0097	14.7	2.1	1.7	2	1	0	2	2	2	1	FMN-dependent	dehydrogenase
AAA_10	PF12846.2	gi|292655456|ref|YP_003535353.1|	-	3.8e-20	72.5	0.2	5e-10	39.3	0.0	2.9	2	1	0	3	3	3	2	AAA-like	domain
DUF87	PF01935.12	gi|292655456|ref|YP_003535353.1|	-	6.2e-12	45.8	0.9	1e-11	45.0	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|292655456|ref|YP_003535353.1|	-	0.00013	20.5	0.1	0.0082	14.5	0.0	2.5	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
Med4	PF10018.4	gi|292655456|ref|YP_003535353.1|	-	0.00015	21.2	0.5	0.00038	19.8	0.4	1.6	1	0	0	1	1	1	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
FtsK_SpoIIIE	PF01580.13	gi|292655456|ref|YP_003535353.1|	-	0.001	18.6	2.2	0.0087	15.5	0.0	2.9	2	1	0	2	2	2	1	FtsK/SpoIIIE	family
Zot	PF05707.7	gi|292655456|ref|YP_003535353.1|	-	0.0018	17.8	0.1	0.29	10.5	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
CbiA	PF01656.18	gi|292655456|ref|YP_003535353.1|	-	0.003	17.0	0.0	0.0057	16.0	0.0	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Atg14	PF10186.4	gi|292655456|ref|YP_003535353.1|	-	0.013	14.4	0.5	0.02	13.8	0.4	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
AAA_17	PF13207.1	gi|292655456|ref|YP_003535353.1|	-	0.013	16.2	0.7	0.099	13.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Med9	PF07544.8	gi|292655456|ref|YP_003535353.1|	-	0.024	14.3	3.2	0.05	13.3	2.2	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AAA_25	PF13481.1	gi|292655456|ref|YP_003535353.1|	-	0.026	13.9	0.0	0.09	12.1	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.15	gi|292655456|ref|YP_003535353.1|	-	0.028	14.0	0.0	0.084	12.5	0.0	1.8	2	0	0	2	2	1	0	Adenylylsulphate	kinase
AAA_19	PF13245.1	gi|292655456|ref|YP_003535353.1|	-	0.046	13.4	0.0	0.12	12.0	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
TMF_DNA_bd	PF12329.3	gi|292655456|ref|YP_003535353.1|	-	0.048	13.4	2.1	0.11	12.3	1.4	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
TrwB_AAD_bind	PF10412.4	gi|292655456|ref|YP_003535353.1|	-	0.086	11.4	0.0	0.19	10.3	0.0	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_13	PF13166.1	gi|292655456|ref|YP_003535353.1|	-	0.11	10.9	0.3	0.16	10.3	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|292655456|ref|YP_003535353.1|	-	0.14	11.8	0.0	0.3	10.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DivIC	PF04977.10	gi|292655456|ref|YP_003535353.1|	-	0.16	11.4	4.7	0.42	10.1	3.3	1.6	1	0	0	1	1	1	0	Septum	formation	initiator
IncA	PF04156.9	gi|292655456|ref|YP_003535353.1|	-	0.27	10.7	3.5	0.47	10.0	2.4	1.3	1	0	0	1	1	1	0	IncA	protein
DUF641	PF04859.7	gi|292655456|ref|YP_003535353.1|	-	0.71	9.6	4.0	0.86	9.3	1.6	2.0	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
AAA_23	PF13476.1	gi|292655456|ref|YP_003535353.1|	-	6.4	7.0	6.5	47	4.2	4.5	2.0	1	1	0	1	1	1	0	AAA	domain
IMS	PF00817.15	gi|292655457|ref|YP_003535354.1|	-	1.2e-36	125.7	0.0	2.5e-36	124.7	0.0	1.5	2	0	0	2	2	2	1	impB/mucB/samB	family
IMS_C	PF11799.3	gi|292655457|ref|YP_003535354.1|	-	1.1e-17	64.0	0.0	2.8e-17	62.8	0.0	1.6	2	0	0	2	2	2	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.3	gi|292655457|ref|YP_003535354.1|	-	4.1e-07	29.6	0.0	7.8e-07	28.7	0.0	1.5	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.1	gi|292655457|ref|YP_003535354.1|	-	8.7e-07	29.0	0.0	2.7e-06	27.4	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|292655457|ref|YP_003535354.1|	-	0.00033	20.1	0.1	0.0011	18.4	0.0	1.8	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|292655457|ref|YP_003535354.1|	-	0.18	11.7	0.0	0.43	10.5	0.0	1.6	1	0	0	1	1	1	0	Pathogenicity	locus
HTH_24	PF13412.1	gi|292655458|ref|YP_003535355.1|	-	3.4e-13	48.7	0.1	8.3e-13	47.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|292655458|ref|YP_003535355.1|	-	4.2e-10	39.1	0.1	6.7e-10	38.5	0.1	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|292655458|ref|YP_003535355.1|	-	9.1e-09	34.7	0.1	2e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655458|ref|YP_003535355.1|	-	7.7e-07	28.6	0.0	1.7e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|292655458|ref|YP_003535355.1|	-	1.2e-06	28.2	0.0	2.9e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292655458|ref|YP_003535355.1|	-	2.6e-06	27.2	0.1	8.9e-06	25.5	0.0	1.9	2	1	1	3	3	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.17	gi|292655458|ref|YP_003535355.1|	-	3.1e-06	26.7	0.0	8.8e-06	25.3	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.1	gi|292655458|ref|YP_003535355.1|	-	7.4e-06	25.4	0.0	1.8e-05	24.1	0.0	1.6	2	0	0	2	2	1	1	Homeodomain-like	domain
MarR_2	PF12802.2	gi|292655458|ref|YP_003535355.1|	-	9.4e-06	25.2	0.0	6.2e-05	22.5	0.0	2.2	2	1	1	3	3	3	1	MarR	family
HTH_DeoR	PF08220.7	gi|292655458|ref|YP_003535355.1|	-	2.2e-05	23.9	0.0	4.8e-05	22.8	0.0	1.5	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655458|ref|YP_003535355.1|	-	3.7e-05	23.3	0.0	6.5e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.1	gi|292655458|ref|YP_003535355.1|	-	6.2e-05	23.0	0.0	0.00014	21.9	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|292655458|ref|YP_003535355.1|	-	0.00021	21.3	0.0	0.00097	19.2	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|292655458|ref|YP_003535355.1|	-	0.00025	20.5	0.0	0.00043	19.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|292655458|ref|YP_003535355.1|	-	0.00027	20.5	0.2	0.00053	19.6	0.0	1.5	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.1	gi|292655458|ref|YP_003535355.1|	-	0.0018	18.3	0.0	0.0025	17.9	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|292655458|ref|YP_003535355.1|	-	0.0026	17.7	0.0	0.0044	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|292655458|ref|YP_003535355.1|	-	0.0057	16.9	0.1	0.011	15.9	0.0	1.6	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|292655458|ref|YP_003535355.1|	-	0.0085	15.9	0.0	0.025	14.4	0.0	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_10	PF04967.7	gi|292655458|ref|YP_003535355.1|	-	0.0085	15.6	0.1	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GntR	PF00392.16	gi|292655458|ref|YP_003535355.1|	-	0.0093	15.3	0.0	0.018	14.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.12	gi|292655458|ref|YP_003535355.1|	-	0.015	14.7	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_34	PF13601.1	gi|292655458|ref|YP_003535355.1|	-	0.016	15.2	0.0	0.028	14.4	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
LacI	PF00356.16	gi|292655458|ref|YP_003535355.1|	-	0.019	14.5	0.0	0.11	12.1	0.0	2.2	3	0	0	3	3	2	0	Bacterial	regulatory	proteins,	lacI	family
HTH_6	PF01418.12	gi|292655458|ref|YP_003535355.1|	-	0.024	14.3	0.0	0.044	13.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
Sigma70_r4_2	PF08281.7	gi|292655458|ref|YP_003535355.1|	-	0.029	13.8	0.0	0.056	12.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_N	PF00440.18	gi|292655458|ref|YP_003535355.1|	-	0.042	13.5	0.0	0.1	12.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
FaeA	PF04703.7	gi|292655458|ref|YP_003535355.1|	-	0.06	13.5	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
Stirrup	PF09061.1	gi|292655458|ref|YP_003535355.1|	-	0.067	13.0	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Stirrup
HTH_31	PF13560.1	gi|292655458|ref|YP_003535355.1|	-	0.074	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|292655458|ref|YP_003535355.1|	-	0.076	12.5	0.1	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292655458|ref|YP_003535355.1|	-	0.099	12.4	0.0	0.46	10.3	0.0	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|292655458|ref|YP_003535355.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Transposase
HTH_CodY	PF08222.6	gi|292655458|ref|YP_003535355.1|	-	0.12	11.6	0.0	0.32	10.3	0.0	1.7	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_3	PF01381.17	gi|292655458|ref|YP_003535355.1|	-	0.14	12.0	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
HTH_45	PF14947.1	gi|292655458|ref|YP_003535355.1|	-	0.14	11.9	0.0	0.33	10.8	0.0	1.6	2	0	0	2	2	1	0	Winged	helix-turn-helix
TPP_enzyme_C	PF02775.16	gi|292655459|ref|YP_003535356.1|	-	1.2e-30	106.1	0.2	1.8e-30	105.5	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR	PF01558.13	gi|292655460|ref|YP_003535357.1|	-	1.9e-49	167.9	0.0	3.4e-49	167.0	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
POR_N	PF01855.14	gi|292655460|ref|YP_003535357.1|	-	6.7e-49	166.4	0.2	1.4e-48	165.4	0.1	1.5	1	1	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
TPP_enzyme_N	PF02776.13	gi|292655460|ref|YP_003535357.1|	-	0.00038	19.9	0.0	0.00085	18.8	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.15	gi|292655460|ref|YP_003535357.1|	-	0.0035	17.2	0.0	0.0094	15.8	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Glyco_tran_WecB	PF03808.8	gi|292655460|ref|YP_003535357.1|	-	0.16	11.3	0.0	0.52	9.6	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	WecB/TagA/CpsF	family
Chorismate_synt	PF01264.16	gi|292655461|ref|YP_003535358.1|	-	2.3e-123	411.0	0.0	2.7e-123	410.8	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
SCP-1	PF05483.7	gi|292655461|ref|YP_003535358.1|	-	0.18	9.5	0.4	0.25	9.0	0.3	1.0	1	0	0	1	1	1	0	Synaptonemal	complex	protein	1	(SCP-1)
EPSP_synthase	PF00275.15	gi|292655463|ref|YP_003535360.1|	-	9.3e-103	343.8	0.1	1.1e-102	343.5	0.1	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.6	gi|292655463|ref|YP_003535360.1|	-	0.078	13.3	0.2	0.8	10.0	0.1	2.4	2	1	0	2	2	2	0	Copper	amine	oxidase	N-terminal	domain
Peptidase_M24	PF00557.19	gi|292655464|ref|YP_003535361.1|	-	1.4e-41	142.4	0.3	1.8e-41	142.0	0.2	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|292655464|ref|YP_003535361.1|	-	6e-05	23.5	0.1	0.00017	22.1	0.0	1.8	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
PepSY	PF03413.14	gi|292655464|ref|YP_003535361.1|	-	0.069	13.7	0.8	0.78	10.4	0.1	2.5	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
DUF1643	PF07799.7	gi|292655465|ref|YP_003535362.1|	-	0.063	12.9	0.0	0.097	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1643)
adh_short	PF00106.20	gi|292655466|ref|YP_003535363.1|	-	5.1e-28	98.0	0.1	6.6e-28	97.7	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292655466|ref|YP_003535363.1|	-	5.3e-11	42.7	0.0	6.7e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|292655466|ref|YP_003535363.1|	-	3.9e-10	39.6	0.0	5.7e-10	39.1	0.0	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|292655466|ref|YP_003535363.1|	-	0.0052	16.2	0.0	0.0066	15.8	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
PDH	PF02153.12	gi|292655467|ref|YP_003535364.1|	-	1.4e-13	50.3	0.4	4.2e-12	45.5	0.3	2.0	1	1	0	1	1	1	1	Prephenate	dehydrogenase
GFO_IDH_MocA	PF01408.17	gi|292655467|ref|YP_003535364.1|	-	0.072	13.6	1.7	0.22	12.0	0.1	2.5	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|292655467|ref|YP_003535364.1|	-	0.082	13.3	0.8	0.33	11.4	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Methyltransf_12	PF08242.7	gi|292655468|ref|YP_003535365.1|	-	1.2e-08	35.3	0.6	9.6e-08	32.4	0.0	2.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655468|ref|YP_003535365.1|	-	2.6e-08	33.7	0.0	4.8e-08	32.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655468|ref|YP_003535365.1|	-	2.4e-06	28.0	0.3	7.1e-06	26.5	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Rsm22	PF09243.5	gi|292655468|ref|YP_003535365.1|	-	2.5e-06	26.7	0.0	3.5e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
Methyltransf_11	PF08241.7	gi|292655468|ref|YP_003535365.1|	-	7.4e-06	26.3	0.3	3.3e-05	24.3	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655468|ref|YP_003535365.1|	-	2.8e-05	23.7	0.0	7e-05	22.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655468|ref|YP_003535365.1|	-	0.00079	19.4	0.5	0.0017	18.3	0.3	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655468|ref|YP_003535365.1|	-	0.004	17.4	0.0	0.0095	16.2	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
PALP	PF00291.20	gi|292655468|ref|YP_003535365.1|	-	0.011	15.0	0.0	0.016	14.4	0.0	1.2	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
SurE	PF01975.12	gi|292655469|ref|YP_003535366.1|	-	3.4e-46	157.0	0.1	4.3e-46	156.7	0.0	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
YIF1	PF03878.10	gi|292655470|ref|YP_003535367.1|	-	0.0069	15.5	0.4	0.0074	15.4	0.3	1.1	1	0	0	1	1	1	1	YIF1
UL2	PF08196.6	gi|292655470|ref|YP_003535367.1|	-	0.42	10.3	4.6	0.31	10.8	0.3	2.0	2	0	0	2	2	2	0	UL2	protein
DUF373	PF04123.8	gi|292655471|ref|YP_003535368.1|	-	0.16	10.9	1.9	0.18	10.7	1.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
IncA	PF04156.9	gi|292655471|ref|YP_003535368.1|	-	0.64	9.5	11.2	0.73	9.3	7.8	1.0	1	0	0	1	1	1	0	IncA	protein
DUF1469	PF07332.6	gi|292655471|ref|YP_003535368.1|	-	4.2	7.1	12.6	4.9	6.9	8.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Antibiotic_NAT	PF02522.9	gi|292655472|ref|YP_003535369.1|	-	3.2e-85	285.0	0.0	3.7e-85	284.8	0.0	1.0	1	0	0	1	1	1	1	Aminoglycoside	3-N-acetyltransferase
OsmC	PF02566.14	gi|292655473|ref|YP_003535370.1|	-	1.7e-18	66.6	0.0	2.4e-18	66.1	0.0	1.2	1	0	0	1	1	1	1	OsmC-like	protein
LysE	PF01810.13	gi|292655474|ref|YP_003535371.1|	-	3.6e-17	62.2	2.3	4.2e-17	62.0	1.6	1.0	1	0	0	1	1	1	1	LysE	type	translocator
DUF4040	PF13244.1	gi|292655474|ref|YP_003535371.1|	-	5	7.1	12.4	13	5.8	4.9	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4040)
CM_2	PF01817.16	gi|292655476|ref|YP_003535373.1|	-	1.6e-17	63.3	3.2	1.9e-17	63.0	2.2	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DUF4404	PF14357.1	gi|292655476|ref|YP_003535373.1|	-	0.0055	17.0	0.6	0.0078	16.6	0.4	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4404)
NPFF	PF15085.1	gi|292655476|ref|YP_003535373.1|	-	0.093	13.0	0.3	0.093	13.0	0.2	1.4	2	0	0	2	2	2	0	Neuropeptide	FF
GHMP_kinases_N	PF00288.21	gi|292655477|ref|YP_003535374.1|	-	8.9e-10	38.4	2.6	8.9e-10	38.4	1.8	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|292655477|ref|YP_003535374.1|	-	0.012	15.7	0.0	0.032	14.4	0.0	1.7	1	0	0	1	1	1	0	GHMP	kinases	C	terminal
Repressor_Mnt	PF11423.3	gi|292655479|ref|YP_003535376.1|	-	0.7	9.2	2.5	1.1	8.6	0.2	2.1	2	0	0	2	2	2	0	Regulatory	protein	Mnt
Zn-ribbon_8	PF09723.5	gi|292655480|ref|YP_003535377.1|	-	0.017	15.0	0.6	0.022	14.6	0.4	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.1	gi|292655480|ref|YP_003535377.1|	-	0.017	14.6	1.2	0.025	14.1	0.8	1.3	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2	PF00096.21	gi|292655480|ref|YP_003535377.1|	-	0.018	15.3	0.1	0.029	14.6	0.1	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
C1_4	PF07975.7	gi|292655480|ref|YP_003535377.1|	-	0.054	13.4	0.1	0.063	13.2	0.1	1.2	1	0	0	1	1	1	0	TFIIH	C1-like	domain
AAA	PF00004.24	gi|292655481|ref|YP_003535378.1|	-	1.3e-94	313.3	0.0	1.5e-46	157.8	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|292655481|ref|YP_003535378.1|	-	3.2e-21	75.0	1.1	1.8e-20	72.6	0.3	2.6	3	0	0	3	3	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|292655481|ref|YP_003535378.1|	-	3.7e-15	55.6	0.0	1.1e-06	27.9	0.0	3.2	4	0	0	4	4	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|292655481|ref|YP_003535378.1|	-	2.8e-14	53.5	0.3	1.1e-05	25.5	0.0	3.4	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.9	gi|292655481|ref|YP_003535378.1|	-	4.3e-14	52.7	0.0	1.4e-05	25.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.1	gi|292655481|ref|YP_003535378.1|	-	1.5e-13	50.8	0.1	4.8e-06	26.5	0.0	3.2	3	1	0	3	3	2	2	AAA	domain
AAA_5	PF07728.9	gi|292655481|ref|YP_003535378.1|	-	2.3e-13	50.0	0.2	4e-05	23.3	0.0	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|292655481|ref|YP_003535378.1|	-	4.2e-12	46.3	0.2	0.001	19.2	0.0	4.4	3	2	1	4	4	4	2	AAA	domain
AAA_17	PF13207.1	gi|292655481|ref|YP_003535378.1|	-	2.3e-11	44.5	0.0	0.00045	21.0	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|292655481|ref|YP_003535378.1|	-	1e-10	41.1	2.6	0.00063	19.4	0.1	3.8	3	0	0	3	3	3	2	Part	of	AAA	domain
TIP49	PF06068.8	gi|292655481|ref|YP_003535378.1|	-	2.1e-10	39.9	0.0	9.6e-05	21.2	0.0	2.5	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_14	PF13173.1	gi|292655481|ref|YP_003535378.1|	-	7e-10	38.9	0.0	0.00054	19.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|292655481|ref|YP_003535378.1|	-	5.6e-09	35.3	0.1	0.001	18.2	0.0	2.9	3	0	0	3	3	3	2	Zeta	toxin
AAA_28	PF13521.1	gi|292655481|ref|YP_003535378.1|	-	1e-08	35.2	0.0	0.0016	18.4	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|292655481|ref|YP_003535378.1|	-	2.2e-08	33.7	0.0	0.0026	17.2	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|292655481|ref|YP_003535378.1|	-	2e-07	31.3	0.0	0.033	14.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|292655481|ref|YP_003535378.1|	-	3.1e-07	29.7	0.5	0.0096	15.0	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
CDC48_2	PF02933.12	gi|292655481|ref|YP_003535378.1|	-	5.7e-07	29.0	0.0	1.3e-06	27.9	0.0	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
RNA_helicase	PF00910.17	gi|292655481|ref|YP_003535378.1|	-	9.4e-07	28.9	0.0	0.022	14.9	0.0	2.9	3	0	0	3	3	2	2	RNA	helicase
AAA_3	PF07726.6	gi|292655481|ref|YP_003535378.1|	-	1.4e-06	27.9	0.0	0.027	14.0	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|292655481|ref|YP_003535378.1|	-	1.8e-06	27.7	1.5	0.072	12.7	0.1	4.0	3	1	1	4	4	4	2	NACHT	domain
Sigma54_activat	PF00158.21	gi|292655481|ref|YP_003535378.1|	-	8.8e-06	25.2	0.0	0.24	10.8	0.0	3.3	4	0	0	4	4	3	2	Sigma-54	interaction	domain
AAA_25	PF13481.1	gi|292655481|ref|YP_003535378.1|	-	1.3e-05	24.6	7.9	0.13	11.6	0.8	4.3	2	2	1	3	3	3	2	AAA	domain
Sigma54_activ_2	PF14532.1	gi|292655481|ref|YP_003535378.1|	-	2.2e-05	24.5	0.0	0.2	11.7	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|292655481|ref|YP_003535378.1|	-	2.8e-05	24.4	0.0	0.15	12.3	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
PhoH	PF02562.11	gi|292655481|ref|YP_003535378.1|	-	4e-05	22.9	0.3	0.31	10.2	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
AAA_11	PF13086.1	gi|292655481|ref|YP_003535378.1|	-	4.7e-05	23.0	0.0	0.26	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
T2SE	PF00437.15	gi|292655481|ref|YP_003535378.1|	-	7.5e-05	21.7	0.8	1.3	7.8	0.1	3.3	3	0	0	3	3	3	2	Type	II/IV	secretion	system	protein
Parvo_NS1	PF01057.12	gi|292655481|ref|YP_003535378.1|	-	8.3e-05	21.5	0.0	0.34	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.1	gi|292655481|ref|YP_003535378.1|	-	0.00012	21.7	0.1	0.53	9.8	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.17	gi|292655481|ref|YP_003535378.1|	-	0.00012	21.0	0.0	0.14	10.9	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
DUF2075	PF09848.4	gi|292655481|ref|YP_003535378.1|	-	0.00017	20.6	0.0	0.13	11.2	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|292655481|ref|YP_003535378.1|	-	0.00019	21.0	0.0	0.49	9.8	0.0	2.2	2	0	0	2	2	2	2	Viral	(Superfamily	1)	RNA	helicase
UPF0079	PF02367.12	gi|292655481|ref|YP_003535378.1|	-	0.00025	20.6	0.0	0.55	9.8	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
ResIII	PF04851.10	gi|292655481|ref|YP_003535378.1|	-	0.00046	20.0	0.0	0.6	9.9	0.0	2.5	2	1	1	3	3	2	1	Type	III	restriction	enzyme,	res	subunit
Torsin	PF06309.6	gi|292655481|ref|YP_003535378.1|	-	0.0011	18.9	0.0	2.2	8.1	0.0	2.5	2	0	0	2	2	2	2	Torsin
CPT	PF07931.7	gi|292655481|ref|YP_003535378.1|	-	0.0013	18.4	0.0	1.9	8.0	0.0	2.8	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
KaiC	PF06745.8	gi|292655481|ref|YP_003535378.1|	-	0.0025	16.9	0.0	0.73	8.9	0.0	2.5	2	0	0	2	2	2	1	KaiC
SKI	PF01202.17	gi|292655481|ref|YP_003535378.1|	-	0.0028	17.5	0.0	2	8.2	0.0	2.5	2	0	0	2	2	2	1	Shikimate	kinase
DUF815	PF05673.8	gi|292655481|ref|YP_003535378.1|	-	0.0034	16.3	0.0	0.86	8.4	0.0	2.5	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|292655481|ref|YP_003535378.1|	-	0.0042	16.8	0.0	6.9	6.2	0.0	3.2	2	2	1	3	3	3	0	Archaeal	ATPase
NTPase_1	PF03266.10	gi|292655481|ref|YP_003535378.1|	-	0.0058	16.3	0.0	1.5	8.4	0.0	3.0	2	1	0	2	2	2	1	NTPase
AFG1_ATPase	PF03969.11	gi|292655481|ref|YP_003535378.1|	-	0.007	15.2	0.0	0.78	8.4	0.0	2.3	2	0	0	2	2	2	1	AFG1-like	ATPase
AAA_24	PF13479.1	gi|292655481|ref|YP_003535378.1|	-	0.01	15.4	0.4	4.7	6.7	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|292655481|ref|YP_003535378.1|	-	0.038	13.4	0.0	4	6.8	0.0	2.7	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|292655481|ref|YP_003535378.1|	-	0.057	13.7	0.0	6.7	6.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|292655481|ref|YP_003535378.1|	-	0.07	11.7	0.0	5.8	5.4	0.0	2.1	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
Bac_DnaA	PF00308.13	gi|292655481|ref|YP_003535378.1|	-	0.13	11.8	0.0	23	4.5	0.0	2.5	2	0	0	2	2	2	0	Bacterial	dnaA	protein
DAP3	PF10236.4	gi|292655481|ref|YP_003535378.1|	-	0.25	10.2	0.0	5.4	5.8	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
KTI12	PF08433.5	gi|292655481|ref|YP_003535378.1|	-	0.25	10.5	0.0	9.4	5.3	0.0	2.3	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Methyltransf_11	PF08241.7	gi|292655483|ref|YP_003535380.1|	-	2.8e-08	34.1	0.0	4.1e-08	33.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655483|ref|YP_003535380.1|	-	5.7e-08	33.3	0.0	9.9e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655483|ref|YP_003535380.1|	-	1e-07	31.6	0.0	1.4e-07	31.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655483|ref|YP_003535380.1|	-	7.8e-07	28.9	0.0	1.1e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655483|ref|YP_003535380.1|	-	7.8e-05	22.6	1.1	0.00013	22.0	0.7	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655483|ref|YP_003535380.1|	-	8.9e-05	22.7	0.0	0.00015	22.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655483|ref|YP_003535380.1|	-	0.00014	22.2	0.0	0.00024	21.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292655483|ref|YP_003535380.1|	-	0.00051	19.4	0.0	0.00079	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|292655483|ref|YP_003535380.1|	-	0.00052	19.2	0.1	0.00063	18.9	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
ADH_zinc_N	PF00107.21	gi|292655483|ref|YP_003535380.1|	-	0.0077	15.7	0.3	0.012	15.1	0.2	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_9	PF08003.6	gi|292655483|ref|YP_003535380.1|	-	0.064	11.9	0.0	0.079	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Ubie_methyltran	PF01209.13	gi|292655483|ref|YP_003535380.1|	-	0.071	12.2	0.0	0.11	11.5	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
TehB	PF03848.9	gi|292655483|ref|YP_003535380.1|	-	0.097	11.8	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
HTH_20	PF12840.2	gi|292655485|ref|YP_003535382.1|	-	3.3e-12	46.0	0.2	5e-12	45.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655485|ref|YP_003535382.1|	-	7.9e-08	31.8	0.0	1.1e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|292655485|ref|YP_003535382.1|	-	1.7e-07	30.7	0.1	3e-07	30.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|292655485|ref|YP_003535382.1|	-	2.4e-06	27.1	0.1	9.6e-06	25.2	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292655485|ref|YP_003535382.1|	-	6.9e-06	25.3	0.0	9.5e-06	24.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292655485|ref|YP_003535382.1|	-	1.3e-05	24.8	0.0	1.9e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|292655485|ref|YP_003535382.1|	-	7.5e-05	22.9	0.0	0.00011	22.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.4	gi|292655485|ref|YP_003535382.1|	-	0.00014	21.8	0.0	0.00018	21.4	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
TFIIE_alpha	PF02002.12	gi|292655485|ref|YP_003535382.1|	-	0.00017	21.0	0.0	0.0002	20.7	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
B-block_TFIIIC	PF04182.7	gi|292655485|ref|YP_003535382.1|	-	0.00071	19.3	0.0	0.0014	18.4	0.0	1.5	2	0	0	2	2	1	1	B-block	binding	subunit	of	TFIIIC
HTH_34	PF13601.1	gi|292655485|ref|YP_003535382.1|	-	0.0014	18.6	0.0	0.0019	18.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|292655485|ref|YP_003535382.1|	-	0.0037	17.1	0.2	0.013	15.3	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_10	PF04967.7	gi|292655485|ref|YP_003535382.1|	-	0.0039	16.7	0.1	0.029	13.9	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.14	gi|292655485|ref|YP_003535382.1|	-	0.0041	17.0	0.0	0.0069	16.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_30	PF13556.1	gi|292655485|ref|YP_003535382.1|	-	0.0061	16.1	1.8	0.015	14.9	0.1	2.3	2	1	1	3	3	3	1	PucR	C-terminal	helix-turn-helix	domain
GntR	PF00392.16	gi|292655485|ref|YP_003535382.1|	-	0.0064	15.8	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.5	gi|292655485|ref|YP_003535382.1|	-	0.0081	15.7	0.1	0.014	14.9	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|292655485|ref|YP_003535382.1|	-	0.0097	15.6	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.15	gi|292655485|ref|YP_003535382.1|	-	0.077	13.1	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
RP-C	PF03428.8	gi|292655485|ref|YP_003535382.1|	-	0.11	11.9	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
RNA_pol_Rpo13	PF12136.3	gi|292655486|ref|YP_003535383.1|	-	0.054	13.2	1.0	2.9	7.6	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	Rpo13	subunit	HTH	domain
DEAD_assoc	PF08494.6	gi|292655487|ref|YP_003535384.1|	-	5.8e-39	133.7	0.0	1.1e-38	132.8	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|292655487|ref|YP_003535384.1|	-	3.5e-30	104.7	0.0	1.2e-28	99.7	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|292655487|ref|YP_003535384.1|	-	3.3e-18	65.3	0.0	3.7e-17	61.9	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292655487|ref|YP_003535384.1|	-	1.1e-08	35.1	0.0	2.1e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|292655487|ref|YP_003535384.1|	-	1.7e-06	27.0	0.0	3.3e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_19	PF13245.1	gi|292655487|ref|YP_003535384.1|	-	6.1e-05	22.6	0.0	0.0018	17.9	0.0	2.9	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|292655487|ref|YP_003535384.1|	-	0.00019	20.9	0.1	0.00058	19.3	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
Zn-ribbon_8	PF09723.5	gi|292655487|ref|YP_003535384.1|	-	0.013	15.4	0.5	0.026	14.4	0.3	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
AAA_11	PF13086.1	gi|292655487|ref|YP_003535384.1|	-	0.081	12.4	0.0	0.22	11.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
DUF805	PF05656.9	gi|292655488|ref|YP_003535385.1|	-	0.072	12.9	1.3	0.086	12.6	0.9	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF3487	PF11990.3	gi|292655488|ref|YP_003535385.1|	-	0.13	11.6	0.2	0.15	11.4	0.1	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF2628	PF10947.3	gi|292655488|ref|YP_003535385.1|	-	0.41	10.4	2.5	0.23	11.2	0.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DUF3482	PF11981.3	gi|292655488|ref|YP_003535385.1|	-	0.42	9.7	7.4	0.52	9.5	5.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
HemY_N	PF07219.8	gi|292655489|ref|YP_003535386.1|	-	0.078	12.5	0.5	0.092	12.3	0.4	1.2	1	0	0	1	1	1	0	HemY	protein	N-terminus
PSII	PF00421.14	gi|292655489|ref|YP_003535386.1|	-	0.093	11.3	0.9	0.098	11.2	0.6	1.0	1	0	0	1	1	1	0	Photosystem	II	protein
DUF202	PF02656.10	gi|292655489|ref|YP_003535386.1|	-	0.36	11.0	6.7	0.7	10.1	0.7	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF998	PF06197.8	gi|292655489|ref|YP_003535386.1|	-	1.5	8.0	9.6	0.53	9.5	1.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF998)
Metallophos_2	PF12850.2	gi|292655490|ref|YP_003535387.1|	-	4.8e-06	26.4	0.2	7.2e-06	25.9	0.1	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|292655490|ref|YP_003535387.1|	-	3e-05	23.5	0.8	0.00059	19.2	0.0	2.2	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.20	gi|292655492|ref|YP_003535389.1|	-	2.5e-05	24.0	4.5	1.6	8.6	0.1	3.9	4	0	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
Glycos_transf_1	PF00534.15	gi|292655494|ref|YP_003535391.1|	-	2.7e-28	98.5	0.0	4.9e-28	97.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|292655494|ref|YP_003535391.1|	-	3.2e-17	62.9	0.0	1.1e-16	61.1	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292655494|ref|YP_003535391.1|	-	7.4e-14	52.1	0.0	1.4e-13	51.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|292655494|ref|YP_003535391.1|	-	1.5e-06	28.0	0.0	3.3e-06	26.9	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_transf_5	PF08323.6	gi|292655494|ref|YP_003535391.1|	-	0.00013	21.5	0.0	0.15	11.5	0.0	2.7	1	1	1	2	2	2	2	Starch	synthase	catalytic	domain
RibD_C	PF01872.12	gi|292655495|ref|YP_003535392.1|	-	1.1e-48	165.4	0.1	1.3e-48	165.3	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Thioredoxin	PF00085.15	gi|292655496|ref|YP_003535393.1|	-	2.3e-27	94.6	0.0	2.6e-27	94.5	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|292655496|ref|YP_003535393.1|	-	7e-10	39.0	0.1	5.7e-09	36.1	0.1	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.1	gi|292655496|ref|YP_003535393.1|	-	2.4e-05	24.2	0.0	4.1e-05	23.5	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_8	PF13905.1	gi|292655496|ref|YP_003535393.1|	-	7.3e-05	22.8	0.0	0.00048	20.1	0.0	2.0	1	1	1	2	2	2	1	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|292655496|ref|YP_003535393.1|	-	9e-05	22.2	0.2	0.00014	21.6	0.1	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_4	PF13462.1	gi|292655496|ref|YP_003535393.1|	-	0.00028	20.9	0.1	0.24	11.3	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin
Thioredoxin_9	PF14595.1	gi|292655496|ref|YP_003535393.1|	-	0.00035	20.1	0.0	0.00039	19.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.16	gi|292655496|ref|YP_003535393.1|	-	0.0025	17.4	0.0	0.0028	17.3	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Glutaredoxin	PF00462.19	gi|292655496|ref|YP_003535393.1|	-	0.015	15.2	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	Glutaredoxin
DIM1	PF02966.11	gi|292655496|ref|YP_003535393.1|	-	0.043	13.3	0.2	0.12	11.8	0.1	1.7	1	1	0	1	1	1	0	Mitosis	protein	DIM1
DUF836	PF05768.9	gi|292655496|ref|YP_003535393.1|	-	0.048	13.9	0.1	0.065	13.4	0.0	1.4	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.1	gi|292655496|ref|YP_003535393.1|	-	0.077	12.4	0.0	0.095	12.1	0.0	1.2	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
HyaE	PF07449.6	gi|292655496|ref|YP_003535393.1|	-	0.11	12.3	0.3	0.26	11.1	0.2	1.7	1	1	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Sigma70_r3	PF04539.11	gi|292655496|ref|YP_003535393.1|	-	0.13	12.1	2.0	1.2	9.0	0.2	2.4	2	0	0	2	2	2	0	Sigma-70	region	3
NifU	PF01106.12	gi|292655497|ref|YP_003535394.1|	-	1.2e-09	37.7	0.1	2.2e-09	36.9	0.0	1.5	1	1	1	2	2	2	1	NifU-like	domain
SBDS	PF01172.13	gi|292655498|ref|YP_003535395.1|	-	2.7e-25	87.9	0.0	4.2e-25	87.3	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|292655498|ref|YP_003535395.1|	-	3.9e-19	68.5	0.0	5.7e-19	68.0	0.0	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
FUN14	PF04930.10	gi|292655499|ref|YP_003535396.1|	-	1.1e-19	70.5	2.9	1.3e-19	70.2	2.0	1.0	1	0	0	1	1	1	1	FUN14	family
Tmemb_14	PF03647.8	gi|292655499|ref|YP_003535396.1|	-	0.74	10.2	5.5	0.35	11.3	0.2	2.2	2	0	0	2	2	2	0	Transmembrane	proteins	14C
ATPase_gene1	PF09527.5	gi|292655499|ref|YP_003535396.1|	-	3.3	7.5	6.3	3.7	7.4	2.1	2.4	2	1	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
MMR_HSR1	PF01926.18	gi|292655500|ref|YP_003535397.1|	-	6.4e-19	68.0	0.0	2e-18	66.4	0.0	1.8	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|292655500|ref|YP_003535397.1|	-	2.6e-12	46.5	0.0	6.6e-12	45.2	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP-bdg_N	PF13167.1	gi|292655500|ref|YP_003535397.1|	-	1.4e-10	41.1	0.0	3.1e-10	40.0	0.0	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
cobW	PF02492.14	gi|292655500|ref|YP_003535397.1|	-	2e-05	24.1	0.0	0.00089	18.7	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.13	gi|292655500|ref|YP_003535397.1|	-	2.9e-05	23.3	0.8	0.044	13.0	0.0	2.9	4	0	0	4	4	4	2	Ferrous	iron	transport	protein	B
PduV-EutP	PF10662.4	gi|292655500|ref|YP_003535397.1|	-	0.00028	20.3	0.0	0.096	12.1	0.0	2.3	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
Arf	PF00025.16	gi|292655500|ref|YP_003535397.1|	-	0.0043	16.2	0.4	2	7.6	0.0	2.5	2	1	0	2	2	2	2	ADP-ribosylation	factor	family
Miro	PF08477.8	gi|292655500|ref|YP_003535397.1|	-	0.006	17.0	0.0	0.03	14.8	0.0	2.2	2	1	0	2	2	2	1	Miro-like	protein
AAA_18	PF13238.1	gi|292655500|ref|YP_003535397.1|	-	0.01	16.1	0.1	0.058	13.6	0.0	2.4	2	1	1	3	3	2	0	AAA	domain
AAA_17	PF13207.1	gi|292655500|ref|YP_003535397.1|	-	0.012	16.4	2.2	0.069	13.9	0.0	3.0	2	2	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|292655500|ref|YP_003535397.1|	-	0.023	14.4	0.0	0.079	12.6	0.0	2.1	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|292655500|ref|YP_003535397.1|	-	0.023	14.5	0.5	0.078	12.8	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|292655500|ref|YP_003535397.1|	-	0.033	13.5	1.8	0.2	11.0	0.0	2.9	2	1	1	3	3	3	0	AAA	domain
ATP_bind_1	PF03029.12	gi|292655500|ref|YP_003535397.1|	-	0.08	12.4	0.1	3.7	7.0	0.0	2.2	1	1	1	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_22	PF13401.1	gi|292655500|ref|YP_003535397.1|	-	0.11	12.6	0.0	0.36	10.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|292655500|ref|YP_003535397.1|	-	0.56	10.4	3.6	7.9	6.7	0.0	2.3	1	1	1	2	2	2	0	AAA	domain
MoaC	PF01967.16	gi|292655501|ref|YP_003535398.1|	-	3.8e-43	146.4	1.0	4.4e-43	146.2	0.7	1.0	1	0	0	1	1	1	1	MoaC	family
Carb_kinase	PF01256.12	gi|292655502|ref|YP_003535399.1|	-	3.1e-51	174.0	0.5	6.5e-51	172.9	0.3	1.5	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.10	gi|292655502|ref|YP_003535399.1|	-	4.9e-41	140.1	1.4	4.9e-41	140.1	1.0	1.8	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.10	gi|292655502|ref|YP_003535399.1|	-	1.7e-05	24.1	0.0	2.9e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|292655502|ref|YP_003535399.1|	-	0.05	12.8	0.0	0.096	11.8	0.0	1.4	1	0	0	1	1	1	0	Phosphomethylpyrimidine	kinase
MFS_1	PF07690.11	gi|292655503|ref|YP_003535400.1|	-	4.7e-40	137.3	77.2	2.3e-34	118.6	34.0	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|292655503|ref|YP_003535400.1|	-	0.78	7.7	8.1	0.026	12.5	0.5	1.9	2	0	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
HTH_20	PF12840.2	gi|292655504|ref|YP_003535401.1|	-	2.7e-09	36.7	0.4	3.5e-09	36.3	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655504|ref|YP_003535401.1|	-	5.6e-05	22.7	0.0	8e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|292655504|ref|YP_003535401.1|	-	0.00011	21.5	0.0	0.00015	21.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292655504|ref|YP_003535401.1|	-	0.0013	18.3	0.0	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292655504|ref|YP_003535401.1|	-	0.023	14.3	0.2	0.033	13.8	0.1	1.3	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|292655504|ref|YP_003535401.1|	-	0.12	12.5	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.1	gi|292655504|ref|YP_003535401.1|	-	0.14	11.9	0.0	0.18	11.6	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
Helicase_C_2	PF13307.1	gi|292655505|ref|YP_003535402.1|	-	5.6e-31	107.7	0.0	1.8e-30	106.0	0.0	1.8	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|292655505|ref|YP_003535402.1|	-	1.9e-08	33.8	0.0	4.3e-08	32.7	0.0	1.6	1	1	0	1	1	1	1	DEAD_2
AAA_19	PF13245.1	gi|292655505|ref|YP_003535402.1|	-	0.00017	21.2	0.3	0.00067	19.3	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
PhoH	PF02562.11	gi|292655505|ref|YP_003535402.1|	-	0.00028	20.1	0.0	0.00068	18.9	0.0	1.5	2	0	0	2	2	2	1	PhoH-like	protein
ResIII	PF04851.10	gi|292655505|ref|YP_003535402.1|	-	0.0012	18.7	0.0	0.017	14.9	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.1	gi|292655505|ref|YP_003535402.1|	-	0.0072	15.9	0.0	0.09	12.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF2075	PF09848.4	gi|292655505|ref|YP_003535402.1|	-	0.0091	15.0	0.0	0.074	12.0	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
DEAD	PF00270.24	gi|292655505|ref|YP_003535402.1|	-	0.015	14.7	0.0	1.5	8.3	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
zf-FCS	PF06467.9	gi|292655506|ref|YP_003535403.1|	-	0.0034	17.0	0.5	0.0076	15.8	0.4	1.5	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-ribbon_3	PF13248.1	gi|292655506|ref|YP_003535403.1|	-	0.034	13.3	0.6	0.058	12.6	0.1	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2116	PF09889.4	gi|292655506|ref|YP_003535403.1|	-	0.037	13.8	3.3	0.62	9.8	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-dskA_traR	PF01258.12	gi|292655506|ref|YP_003535403.1|	-	0.19	11.4	0.1	0.19	11.4	0.1	1.8	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
MutS_V	PF00488.16	gi|292655508|ref|YP_003535405.1|	-	1.2e-07	31.4	0.0	2e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.1	gi|292655508|ref|YP_003535405.1|	-	0.0027	17.6	2.8	0.0065	16.4	0.1	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|292655508|ref|YP_003535405.1|	-	0.0048	16.7	0.0	0.0098	15.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_21	PF13304.1	gi|292655508|ref|YP_003535405.1|	-	0.019	14.9	0.1	0.054	13.4	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
IMS_HHH	PF11798.3	gi|292655508|ref|YP_003535405.1|	-	0.032	14.2	0.0	0.084	12.9	0.0	1.7	1	0	0	1	1	1	0	IMS	family	HHH	motif
Apolipoprotein	PF01442.13	gi|292655508|ref|YP_003535405.1|	-	0.13	11.7	1.5	0.25	10.8	1.0	1.4	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
UPF0058	PF01893.11	gi|292655509|ref|YP_003535406.1|	-	5.5e-11	42.3	0.0	6.2e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
HATPase_c	PF02518.21	gi|292655510|ref|YP_003535407.1|	-	2.9e-20	72.0	0.0	6.8e-20	70.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.1	gi|292655510|ref|YP_003535407.1|	-	1e-18	68.2	2.2	9.5e-18	65.1	0.3	2.5	2	0	0	2	2	2	1	GAF	domain
PAS_4	PF08448.5	gi|292655510|ref|YP_003535407.1|	-	2.1e-16	59.9	1.5	4.9e-16	58.7	1.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|292655510|ref|YP_003535407.1|	-	2.6e-13	50.2	0.0	8.7e-13	48.5	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292655510|ref|YP_003535407.1|	-	6.9e-09	35.5	0.1	2.2e-08	33.9	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|292655510|ref|YP_003535407.1|	-	0.00024	20.7	0.0	0.00058	19.5	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
PAS	PF00989.19	gi|292655510|ref|YP_003535407.1|	-	0.00064	19.4	0.1	0.0025	17.6	0.0	2.1	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|292655510|ref|YP_003535407.1|	-	0.0049	16.6	0.1	0.015	15.1	0.1	1.9	1	0	0	1	1	1	1	PAS	domain
DASH_Duo1	PF08651.5	gi|292655510|ref|YP_003535407.1|	-	0.016	14.7	1.5	0.25	10.9	0.0	2.9	2	1	0	2	2	2	0	DASH	complex	subunit	Duo1
GAF_3	PF13492.1	gi|292655510|ref|YP_003535407.1|	-	0.018	15.1	0.9	0.29	11.2	0.0	2.9	3	0	0	3	3	3	0	GAF	domain
HTH_10	PF04967.7	gi|292655511|ref|YP_003535408.1|	-	5.2e-21	73.9	0.0	1e-20	73.0	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.19	gi|292655511|ref|YP_003535408.1|	-	6.9e-17	61.4	0.2	2e-16	60.0	0.2	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|292655511|ref|YP_003535408.1|	-	3.6e-05	23.6	3.1	3.6e-05	23.6	2.1	2.6	2	1	0	2	2	1	1	HalX	domain
GerE	PF00196.14	gi|292655511|ref|YP_003535408.1|	-	0.00045	19.4	0.0	0.002	17.4	0.0	2.0	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
GAF	PF01590.21	gi|292655511|ref|YP_003535408.1|	-	0.001	19.1	0.1	0.0042	17.2	0.1	2.2	1	0	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.11	gi|292655511|ref|YP_003535408.1|	-	0.0026	17.0	0.0	0.01	15.1	0.0	2.1	1	0	0	1	1	1	1	Sigma-70,	region	4
GAF_3	PF13492.1	gi|292655511|ref|YP_003535408.1|	-	0.0046	17.0	1.8	0.068	13.2	0.1	3.0	3	0	0	3	3	3	1	GAF	domain
LexA_DNA_bind	PF01726.11	gi|292655511|ref|YP_003535408.1|	-	0.015	14.8	0.1	0.049	13.2	0.0	1.9	1	1	0	1	1	1	0	LexA	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|292655511|ref|YP_003535408.1|	-	0.037	13.4	0.0	0.33	10.4	0.0	2.3	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.1	gi|292655511|ref|YP_003535408.1|	-	0.039	13.3	0.0	0.066	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292655511|ref|YP_003535408.1|	-	0.054	13.1	0.3	0.18	11.5	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Flagellin_IN	PF07196.8	gi|292655511|ref|YP_003535408.1|	-	0.093	12.7	2.0	1.1	9.2	0.1	2.9	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
DUF1522	PF07482.6	gi|292655511|ref|YP_003535408.1|	-	0.34	11.0	5.7	0.73	10.0	3.9	1.6	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1522)
Response_reg	PF00072.19	gi|292655512|ref|YP_003535409.1|	-	5.7e-14	52.0	0.0	7.6e-14	51.6	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
TIR_2	PF13676.1	gi|292655512|ref|YP_003535409.1|	-	0.11	12.6	0.1	1.3	9.2	0.1	2.1	1	1	0	1	1	1	0	TIR	domain
TIR-like	PF10137.4	gi|292655512|ref|YP_003535409.1|	-	0.14	11.7	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
PDGF	PF00341.12	gi|292655513|ref|YP_003535410.1|	-	0.0034	17.4	1.4	0.0037	17.3	0.5	1.4	1	1	0	1	1	1	1	PDGF/VEGF	domain
Zn-ribbon_8	PF09723.5	gi|292655513|ref|YP_003535410.1|	-	0.02	14.8	3.5	1	9.3	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|292655513|ref|YP_003535410.1|	-	0.057	13.7	1.5	0.092	13.0	1.1	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
CpXC	PF14353.1	gi|292655513|ref|YP_003535410.1|	-	0.13	12.2	1.8	0.15	12.0	1.2	1.1	1	0	0	1	1	1	0	CpXC	protein
Zn_Tnp_IS1595	PF12760.2	gi|292655513|ref|YP_003535410.1|	-	0.15	11.9	4.8	12	5.7	0.3	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
RecR	PF02132.10	gi|292655513|ref|YP_003535410.1|	-	0.22	10.9	2.7	1.4	8.4	0.2	2.2	2	0	0	2	2	2	0	RecR	protein
zinc_ribbon_4	PF13717.1	gi|292655513|ref|YP_003535410.1|	-	0.44	10.2	4.7	1.7	8.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
RNHCP	PF12647.2	gi|292655513|ref|YP_003535410.1|	-	0.58	10.0	4.0	8.4	6.3	2.8	2.1	1	1	0	1	1	1	0	RNHCP	domain
zinc_ribbon_5	PF13719.1	gi|292655513|ref|YP_003535410.1|	-	0.65	9.6	5.1	1.7	8.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292655513|ref|YP_003535410.1|	-	1.3	8.8	5.2	3.2	7.6	3.6	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2387	PF09526.5	gi|292655513|ref|YP_003535410.1|	-	2.1	8.3	6.1	53	3.8	1.0	2.1	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zf-DNL	PF05180.7	gi|292655513|ref|YP_003535410.1|	-	4.8	6.9	6.2	28	4.5	0.1	2.8	1	1	2	3	3	3	0	DNL	zinc	finger
zf-TFIIB	PF13453.1	gi|292655513|ref|YP_003535410.1|	-	7.6	5.8	6.9	28	4.0	0.4	2.0	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
TrmB	PF01978.14	gi|292655514|ref|YP_003535411.1|	-	4.3e-16	58.3	0.0	5.7e-16	57.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|292655514|ref|YP_003535411.1|	-	1.6e-06	28.1	0.1	2.2e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.2	gi|292655514|ref|YP_003535411.1|	-	5.9e-06	25.8	0.1	9.1e-06	25.2	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292655514|ref|YP_003535411.1|	-	7.9e-05	22.1	0.1	0.00015	21.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292655514|ref|YP_003535411.1|	-	0.00043	20.5	0.0	0.00061	20.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|292655514|ref|YP_003535411.1|	-	0.0006	19.4	0.2	0.0014	18.2	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292655514|ref|YP_003535411.1|	-	0.00092	18.5	0.0	0.0016	17.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|292655514|ref|YP_003535411.1|	-	0.0019	17.9	0.2	0.0028	17.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.8	gi|292655514|ref|YP_003535411.1|	-	0.0023	17.4	0.0	0.0046	16.5	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_11	PF08279.7	gi|292655514|ref|YP_003535411.1|	-	0.0029	17.1	0.0	0.0041	16.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
GntR	PF00392.16	gi|292655514|ref|YP_003535411.1|	-	0.008	15.5	0.3	0.013	14.8	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_23	PF13384.1	gi|292655514|ref|YP_003535411.1|	-	0.02	14.5	0.1	0.032	13.8	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
PadR	PF03551.9	gi|292655514|ref|YP_003535411.1|	-	0.02	14.6	0.3	0.039	13.7	0.2	1.6	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_Crp_2	PF13545.1	gi|292655514|ref|YP_003535411.1|	-	0.024	14.4	0.3	0.045	13.5	0.2	1.6	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.1	gi|292655514|ref|YP_003535411.1|	-	0.024	14.1	0.0	0.039	13.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|292655514|ref|YP_003535411.1|	-	0.029	14.5	0.0	0.04	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_5	PF01022.15	gi|292655514|ref|YP_003535411.1|	-	0.036	13.7	0.0	0.056	13.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|292655514|ref|YP_003535411.1|	-	0.071	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
UMPH-1	PF05822.7	gi|292655514|ref|YP_003535411.1|	-	0.073	12.3	0.1	0.09	12.0	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
FUR	PF01475.14	gi|292655514|ref|YP_003535411.1|	-	0.1	12.5	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Rio2_N	PF09202.6	gi|292655514|ref|YP_003535411.1|	-	0.14	12.2	0.2	0.23	11.5	0.1	1.4	1	1	0	1	1	1	0	Rio2,	N-terminal
HTH_AsnC-type	PF13404.1	gi|292655514|ref|YP_003535411.1|	-	0.16	11.5	1.1	0.3	10.6	0.3	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
TauE	PF01925.14	gi|292655515|ref|YP_003535412.1|	-	4.6e-38	131.0	26.2	4.6e-38	131.0	18.2	2.0	1	1	1	2	2	2	1	Sulfite	exporter	TauE/SafE
Sulf_transp	PF04143.9	gi|292655517|ref|YP_003535414.1|	-	1.9e-09	37.3	7.2	1.9e-09	37.3	5.0	2.8	3	0	0	3	3	3	2	Sulphur	transport
DUF4235	PF14019.1	gi|292655517|ref|YP_003535414.1|	-	3.9	7.3	6.3	19	5.2	0.3	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4235)
DUF4341	PF14241.1	gi|292655518|ref|YP_003535415.1|	-	1.7e-17	62.8	6.1	7.5e-16	57.5	1.9	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4341)
Sulf_transp	PF04143.9	gi|292655518|ref|YP_003535415.1|	-	1.4e-10	41.0	4.1	1.4e-10	41.0	2.9	3.2	3	1	0	3	3	3	2	Sulphur	transport
DUF1469	PF07332.6	gi|292655518|ref|YP_003535415.1|	-	0.67	9.7	0.0	0.67	9.7	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1469)
DUF1761	PF08570.5	gi|292655518|ref|YP_003535415.1|	-	0.81	9.7	9.3	4.1	7.4	0.2	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1761)
Lactamase_B	PF00753.22	gi|292655519|ref|YP_003535416.1|	-	1.2e-21	77.2	10.4	1.2e-21	77.2	7.2	1.7	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|292655519|ref|YP_003535416.1|	-	1.5e-09	38.2	0.0	2.8e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|292655519|ref|YP_003535416.1|	-	0.038	13.5	1.1	0.11	12.0	0.8	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292655519|ref|YP_003535416.1|	-	0.091	12.4	0.1	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
TusA	PF01206.12	gi|292655520|ref|YP_003535417.1|	-	2.3e-18	65.5	0.0	2.6e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|292655520|ref|YP_003535417.1|	-	2.3e-05	23.8	0.0	6.1e-05	22.5	0.0	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
DrsE_2	PF13686.1	gi|292655521|ref|YP_003535418.1|	-	5.7e-54	181.9	1.5	8.8e-54	181.3	1.0	1.3	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|292655521|ref|YP_003535418.1|	-	1e-05	25.5	0.4	0.00015	21.7	0.1	2.5	2	1	0	2	2	2	1	DsrE/DsrF-like	family
DUF3138	PF11336.3	gi|292655521|ref|YP_003535418.1|	-	0.007	14.6	0.2	0.095	10.8	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3138)
DUF1192	PF06698.6	gi|292655521|ref|YP_003535418.1|	-	0.046	13.5	0.0	0.099	12.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
FlxA	PF14282.1	gi|292655521|ref|YP_003535418.1|	-	0.052	13.4	0.6	0.077	12.9	0.1	1.5	2	0	0	2	2	2	0	FlxA-like	protein
RgpF	PF05045.7	gi|292655521|ref|YP_003535418.1|	-	0.087	11.3	0.0	0.14	10.7	0.0	1.2	1	0	0	1	1	1	0	Rhamnan	synthesis	protein	F
Lactamase_B	PF00753.22	gi|292655522|ref|YP_003535419.1|	-	1.9e-19	70.0	12.9	2.7e-19	69.5	8.9	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292655522|ref|YP_003535419.1|	-	0.00039	20.0	2.1	0.00052	19.6	1.4	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292655522|ref|YP_003535419.1|	-	0.024	14.3	0.5	0.037	13.7	0.4	1.4	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
AIM24	PF01987.12	gi|292655523|ref|YP_003535420.1|	-	1.8e-45	155.0	0.5	2.1e-45	154.8	0.4	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Aldedh	PF00171.17	gi|292655524|ref|YP_003535421.1|	-	1.3e-21	76.4	3.9	6e-18	64.4	0.9	2.3	2	1	0	2	2	2	2	Aldehyde	dehydrogenase	family
DUF4226	PF10774.4	gi|292655524|ref|YP_003535421.1|	-	0.024	14.6	5.9	0.5	10.4	0.0	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
AA_kinase	PF00696.23	gi|292655525|ref|YP_003535422.1|	-	1.4e-39	136.0	0.9	1.4e-39	136.0	0.6	1.6	2	0	0	2	2	2	1	Amino	acid	kinase	family
PGK	PF00162.14	gi|292655525|ref|YP_003535422.1|	-	0.053	12.0	0.0	0.066	11.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoglycerate	kinase
Adaptin_binding	PF10199.4	gi|292655525|ref|YP_003535422.1|	-	2.1	8.6	4.6	1.2	9.3	1.9	1.5	2	0	0	2	2	2	0	Alpha	and	gamma	adaptin	binding	protein	p34
P5CR_dimer	PF14748.1	gi|292655526|ref|YP_003535423.1|	-	2.9e-37	126.9	1.0	5.4e-37	126.0	0.7	1.5	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|292655526|ref|YP_003535423.1|	-	7.7e-18	64.7	1.4	4.9e-17	62.1	0.0	2.7	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|292655526|ref|YP_003535423.1|	-	6.6e-07	29.3	0.0	2.3e-06	27.5	0.0	1.9	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PDH	PF02153.12	gi|292655526|ref|YP_003535423.1|	-	5.1e-05	22.2	0.5	0.003	16.4	0.1	2.1	2	0	0	2	2	2	1	Prephenate	dehydrogenase
3HCDH_N	PF02737.13	gi|292655526|ref|YP_003535423.1|	-	0.0004	20.0	1.3	0.0014	18.2	0.0	2.5	1	1	2	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|292655526|ref|YP_003535423.1|	-	0.0006	19.5	2.3	0.043	13.5	1.6	2.4	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.13	gi|292655526|ref|YP_003535423.1|	-	0.0021	18.0	0.3	0.011	15.7	0.0	2.4	2	1	0	2	2	2	1	TrkA-N	domain
ApbA	PF02558.11	gi|292655526|ref|YP_003535423.1|	-	0.0094	15.3	1.5	0.079	12.4	1.1	2.2	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.17	gi|292655526|ref|YP_003535423.1|	-	0.06	13.8	0.8	0.31	11.5	0.0	2.5	1	1	3	4	4	4	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Methyltransf_26	PF13659.1	gi|292655526|ref|YP_003535423.1|	-	0.19	11.7	2.3	0.35	10.9	1.6	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
CoA_binding_2	PF13380.1	gi|292655526|ref|YP_003535423.1|	-	0.27	11.4	2.1	0.25	11.5	0.3	2.0	2	2	0	2	2	2	0	CoA	binding	domain
ThiF	PF00899.16	gi|292655526|ref|YP_003535423.1|	-	0.53	10.1	3.2	0.63	9.8	1.0	2.2	1	1	0	2	2	2	0	ThiF	family
adh_short	PF00106.20	gi|292655526|ref|YP_003535423.1|	-	3.5	7.5	7.2	0.3	10.9	1.2	1.9	2	0	0	2	2	2	0	short	chain	dehydrogenase
Acyl-CoA_dh_1	PF00441.19	gi|292655527|ref|YP_003535424.1|	-	2.2e-44	151.1	2.8	2.2e-44	151.1	1.9	1.6	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|292655527|ref|YP_003535424.1|	-	4.3e-25	88.4	1.2	4.3e-25	88.4	0.8	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|292655527|ref|YP_003535424.1|	-	5.4e-19	67.4	1.2	1.1e-18	66.5	0.2	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|292655527|ref|YP_003535424.1|	-	4.1e-17	62.6	4.2	8.4e-17	61.6	2.9	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.3	gi|292655527|ref|YP_003535424.1|	-	0.00018	20.9	0.1	0.0014	18.0	0.1	2.1	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
AMP-binding	PF00501.23	gi|292655528|ref|YP_003535425.1|	-	1.2e-86	290.7	0.0	1.4e-86	290.4	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655528|ref|YP_003535425.1|	-	9.5e-20	71.3	0.2	2e-19	70.2	0.2	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
BssC_TutF	PF08201.6	gi|292655528|ref|YP_003535425.1|	-	0.1	12.1	2.6	0.84	9.1	0.1	2.6	2	0	0	2	2	2	0	BssC/TutF	protein
AMP-binding	PF00501.23	gi|292655529|ref|YP_003535426.1|	-	7.9e-89	297.9	0.6	1.1e-88	297.4	0.5	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655529|ref|YP_003535426.1|	-	8.3e-16	58.7	0.4	4.8e-15	56.2	0.1	2.5	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
Glyoxalase_4	PF13669.1	gi|292655530|ref|YP_003535427.1|	-	1.3e-18	67.0	0.3	1.5e-18	66.7	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|292655530|ref|YP_003535427.1|	-	7.6e-09	36.1	0.2	8.3e-09	36.0	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.1	gi|292655530|ref|YP_003535427.1|	-	3.4e-08	33.5	0.4	4e-08	33.3	0.3	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|292655530|ref|YP_003535427.1|	-	2.3e-06	27.5	0.3	2.7e-06	27.3	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Zn_peptidase	PF04228.8	gi|292655530|ref|YP_003535427.1|	-	0.13	11.4	0.0	0.17	11.0	0.0	1.1	1	0	0	1	1	1	0	Putative	neutral	zinc	metallopeptidase
YbjQ_1	PF01906.12	gi|292655531|ref|YP_003535428.1|	-	7.8e-36	122.6	6.9	9.1e-36	122.4	4.8	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
SeleniumBinding	PF11524.3	gi|292655531|ref|YP_003535428.1|	-	0.16	12.1	0.1	0.16	12.1	0.1	1.5	2	0	0	2	2	2	0	Selenium	binding	protein
DUF3816	PF12822.2	gi|292655532|ref|YP_003535429.1|	-	0.13	12.1	1.6	0.16	11.8	1.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
MM_CoA_mutase	PF01642.17	gi|292655534|ref|YP_003535431.1|	-	2.8e-208	692.2	2.1	3.2e-208	692.0	1.4	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
DUF547	PF04784.9	gi|292655534|ref|YP_003535431.1|	-	0.14	12.0	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF547
Methyltransf_3	PF01596.12	gi|292655535|ref|YP_003535432.1|	-	1.3e-21	76.5	0.0	1.7e-21	76.1	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.1	gi|292655535|ref|YP_003535432.1|	-	3e-14	53.7	2.0	3.7e-14	53.4	0.8	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655535|ref|YP_003535432.1|	-	2.4e-08	34.5	0.3	3.9e-08	33.8	0.2	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655535|ref|YP_003535432.1|	-	7.2e-08	32.4	0.3	1.8e-07	31.2	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655535|ref|YP_003535432.1|	-	0.00013	21.6	0.0	0.00016	21.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Glyco_tranf_2_3	PF13641.1	gi|292655535|ref|YP_003535432.1|	-	0.022	14.5	0.1	0.15	11.8	0.0	2.2	2	1	0	2	2	2	0	Glycosyltransferase	like	family	2
DUF938	PF06080.7	gi|292655535|ref|YP_003535432.1|	-	0.17	11.4	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
NAC	PF01849.13	gi|292655536|ref|YP_003535433.1|	-	1.7e-18	65.8	0.5	2.3e-18	65.4	0.4	1.2	1	0	0	1	1	1	1	NAC	domain
UBA	PF00627.26	gi|292655536|ref|YP_003535433.1|	-	0.00014	21.6	2.6	0.00025	20.7	0.2	2.3	2	0	0	2	2	2	1	UBA/TS-N	domain
UBA_4	PF14555.1	gi|292655536|ref|YP_003535433.1|	-	0.012	15.0	0.1	0.025	14.1	0.1	1.4	1	0	0	1	1	1	0	UBA-like	domain
CUE	PF02845.11	gi|292655536|ref|YP_003535433.1|	-	0.048	13.1	0.0	0.091	12.2	0.0	1.4	1	0	0	1	1	1	0	CUE	domain
DUF3867	PF12983.2	gi|292655536|ref|YP_003535433.1|	-	0.11	12.4	0.0	0.15	12.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3867)
GreA_GreB	PF01272.14	gi|292655536|ref|YP_003535433.1|	-	0.12	12.1	0.1	0.22	11.2	0.1	1.5	1	1	0	1	1	1	0	Transcription	elongation	factor,	GreA/GreB,	C-term
GCD14	PF08704.5	gi|292655537|ref|YP_003535434.1|	-	8.2e-19	68.0	0.0	1.2e-15	57.7	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_18	PF12847.2	gi|292655537|ref|YP_003535434.1|	-	2e-15	57.3	0.1	3e-15	56.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655537|ref|YP_003535434.1|	-	2.2e-12	47.0	0.8	9.4e-12	45.0	0.5	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655537|ref|YP_003535434.1|	-	5.6e-09	35.7	0.0	7.5e-09	35.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292655537|ref|YP_003535434.1|	-	1.5e-07	30.9	0.1	4.4e-07	29.4	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_3	PF01596.12	gi|292655537|ref|YP_003535434.1|	-	3.8e-06	26.0	0.0	5e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_23	PF13489.1	gi|292655537|ref|YP_003535434.1|	-	1.1e-05	25.2	0.0	8.9e-05	22.2	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|292655537|ref|YP_003535434.1|	-	2.3e-05	23.6	0.1	2.9e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.15	gi|292655537|ref|YP_003535434.1|	-	3.7e-05	22.8	0.0	5.3e-05	22.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_24	PF13578.1	gi|292655537|ref|YP_003535434.1|	-	4e-05	24.3	0.3	8.7e-05	23.3	0.1	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655537|ref|YP_003535434.1|	-	9.2e-05	22.8	0.1	0.00014	22.2	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|292655537|ref|YP_003535434.1|	-	0.00011	21.8	0.1	0.00014	21.4	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.7	gi|292655537|ref|YP_003535434.1|	-	0.00081	18.8	0.1	0.0013	18.1	0.1	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.15	gi|292655537|ref|YP_003535434.1|	-	0.0058	15.7	0.0	0.0069	15.4	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_12	PF08242.7	gi|292655537|ref|YP_003535434.1|	-	0.017	15.5	0.1	0.031	14.7	0.1	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.9	gi|292655537|ref|YP_003535434.1|	-	0.021	14.0	0.0	0.03	13.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Cons_hypoth95	PF03602.10	gi|292655537|ref|YP_003535434.1|	-	0.027	13.8	0.0	0.037	13.4	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
UPF0020	PF01170.13	gi|292655537|ref|YP_003535434.1|	-	0.077	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_15	PF09445.5	gi|292655537|ref|YP_003535434.1|	-	0.13	11.7	0.0	0.17	11.4	0.0	1.1	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.11	gi|292655537|ref|YP_003535434.1|	-	0.16	11.5	0.0	0.2	11.1	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
TFIIS_C	PF01096.13	gi|292655539|ref|YP_003535436.1|	-	1.4e-17	62.9	2.8	1.4e-17	62.9	2.0	2.1	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|292655539|ref|YP_003535436.1|	-	2.5e-05	23.8	0.5	2.5e-05	23.8	0.3	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.6	gi|292655539|ref|YP_003535436.1|	-	0.00014	21.4	4.9	0.044	13.4	0.4	2.4	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|292655539|ref|YP_003535436.1|	-	0.00025	20.7	5.4	0.055	13.2	0.9	2.4	2	1	0	2	2	2	2	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|292655539|ref|YP_003535436.1|	-	0.00033	20.3	1.0	0.00033	20.3	0.7	2.2	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
DUF2387	PF09526.5	gi|292655539|ref|YP_003535436.1|	-	0.0012	18.6	1.8	0.0012	18.6	1.2	2.2	2	1	0	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
Zn_ribbon_recom	PF13408.1	gi|292655539|ref|YP_003535436.1|	-	0.014	15.5	1.6	1.9	8.8	0.0	2.4	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Lar_restr_allev	PF14354.1	gi|292655539|ref|YP_003535436.1|	-	0.017	15.4	6.0	0.024	14.9	0.8	2.4	2	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
Prok-RING_1	PF14446.1	gi|292655539|ref|YP_003535436.1|	-	0.036	13.7	5.3	1.9	8.2	0.1	3.1	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
PhnA_Zn_Ribbon	PF08274.7	gi|292655539|ref|YP_003535436.1|	-	0.052	13.3	8.5	3.3	7.5	0.1	3.8	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
FdhE	PF04216.7	gi|292655539|ref|YP_003535436.1|	-	0.062	13.0	1.0	0.071	12.8	0.1	1.5	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
DUF4379	PF14311.1	gi|292655539|ref|YP_003535436.1|	-	0.066	13.0	3.5	9.2	6.1	0.2	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4379)
Tnp_zf-ribbon_2	PF13842.1	gi|292655539|ref|YP_003535436.1|	-	0.094	13.1	2.5	7.9	6.9	0.0	3.1	3	0	0	3	3	3	0	DDE_Tnp_1-like	zinc-ribbon
zf-ribbon_3	PF13248.1	gi|292655539|ref|YP_003535436.1|	-	0.11	11.7	5.6	0.96	8.7	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
Baculo_LEF5_C	PF11792.3	gi|292655539|ref|YP_003535436.1|	-	0.15	11.5	4.8	0.082	12.3	1.5	2.0	2	0	0	2	2	2	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
UPF0547	PF10571.4	gi|292655539|ref|YP_003535436.1|	-	0.16	11.6	0.0	0.16	11.6	0.0	3.5	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
GFA	PF04828.9	gi|292655539|ref|YP_003535436.1|	-	0.2	11.5	5.5	1.6	8.7	0.1	2.7	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
PolC_DP2	PF03833.8	gi|292655539|ref|YP_003535436.1|	-	0.23	9.0	4.9	2.4	5.7	0.1	1.9	1	1	1	2	2	2	0	DNA	polymerase	II	large	subunit	DP2
Nudix_N_2	PF14803.1	gi|292655539|ref|YP_003535436.1|	-	0.23	11.1	7.3	4.6	7.0	1.3	3.1	3	1	0	3	3	2	0	Nudix	N-terminal
Terminase_GpA	PF05876.7	gi|292655539|ref|YP_003535436.1|	-	0.23	9.7	4.6	0.086	11.1	0.7	1.8	2	0	0	2	2	2	0	Phage	terminase	large	subunit	(GpA)
Auto_anti-p27	PF06677.7	gi|292655539|ref|YP_003535436.1|	-	0.3	10.8	8.6	0.32	10.7	0.2	2.6	3	0	0	3	3	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_5	PF13719.1	gi|292655539|ref|YP_003535436.1|	-	0.38	10.3	7.1	2.2	7.9	0.0	3.3	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-RING_4	PF14570.1	gi|292655539|ref|YP_003535436.1|	-	0.39	10.3	4.7	8.6	6.0	0.1	3.1	3	0	0	3	3	3	0	RING/Ubox	like	zinc-binding	domain
NOB1_Zn_bind	PF08772.6	gi|292655539|ref|YP_003535436.1|	-	0.39	10.5	4.2	3.9	7.3	0.1	2.5	2	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Rpr2	PF04032.11	gi|292655539|ref|YP_003535436.1|	-	0.51	10.2	4.1	30	4.5	2.9	2.3	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DNA_ligase_ZBD	PF03119.11	gi|292655539|ref|YP_003535436.1|	-	0.56	9.9	5.7	0.97	9.1	0.0	2.8	3	1	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_2	PF13240.1	gi|292655539|ref|YP_003535436.1|	-	0.59	9.6	0.1	0.59	9.6	0.1	3.0	4	0	0	4	4	3	0	zinc-ribbon	domain
zf-C2HC5	PF06221.8	gi|292655539|ref|YP_003535436.1|	-	0.63	9.8	2.7	7.7	6.3	0.0	2.7	2	1	1	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
zinc-ribbons_6	PF07191.7	gi|292655539|ref|YP_003535436.1|	-	0.77	9.5	5.4	1.3	8.8	0.7	2.4	2	1	0	2	2	2	0	zinc-ribbons
zf-TFIIIC	PF12660.2	gi|292655539|ref|YP_003535436.1|	-	1	9.3	3.9	10	6.0	0.1	2.4	1	1	0	2	2	2	0	Putative	zinc-finger	of	transcription	factor	IIIC	complex
HypA	PF01155.14	gi|292655539|ref|YP_003535436.1|	-	1.2	8.8	6.0	13	5.5	0.1	2.6	1	1	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-C4_Topoisom	PF01396.14	gi|292655539|ref|YP_003535436.1|	-	1.2	8.6	5.6	9.7	5.7	1.7	2.6	2	1	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
TerY-C	PF15616.1	gi|292655539|ref|YP_003535436.1|	-	1.3	8.9	5.0	0.58	10.0	0.5	2.0	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
DUF2082	PF09855.4	gi|292655539|ref|YP_003535436.1|	-	1.5	8.7	5.9	0.63	9.9	0.7	2.7	2	2	2	4	4	4	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-IS66	PF13005.2	gi|292655539|ref|YP_003535436.1|	-	1.6	8.7	8.9	4.5	7.3	0.0	3.9	3	1	1	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
FYDLN_acid	PF09538.5	gi|292655539|ref|YP_003535436.1|	-	2	9.0	8.2	2.9	8.5	0.7	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zinc_ribbon_4	PF13717.1	gi|292655539|ref|YP_003535436.1|	-	2.5	7.8	9.8	1.8	8.3	0.1	3.2	4	0	0	4	4	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292655539|ref|YP_003535436.1|	-	4.2	6.7	12.7	5.9	6.3	0.2	3.9	3	1	1	4	4	4	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|292655539|ref|YP_003535436.1|	-	6.2	6.8	12.5	1.4	8.9	0.4	3.9	2	2	0	3	3	3	0	Zinc	ribbon	domain
IBR	PF01485.16	gi|292655539|ref|YP_003535436.1|	-	8.1	6.4	10.1	6e+02	0.4	7.0	2.9	1	1	0	1	1	1	0	IBR	domain
ECH	PF00378.15	gi|292655541|ref|YP_003535438.1|	-	5.2e-63	212.4	0.0	5.8e-63	212.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
SDH_sah	PF01972.11	gi|292655541|ref|YP_003535438.1|	-	0.0011	17.8	0.0	0.0016	17.2	0.0	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
PqqD	PF05402.7	gi|292655542|ref|YP_003535439.1|	-	0.0029	17.5	0.1	0.0067	16.4	0.0	1.7	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
GntR	PF00392.16	gi|292655542|ref|YP_003535439.1|	-	0.066	12.6	0.0	0.17	11.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|292655542|ref|YP_003535439.1|	-	0.086	12.5	0.1	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Methyltransf_31	PF13847.1	gi|292655543|ref|YP_003535440.1|	-	7.2e-17	61.3	0.0	8e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655543|ref|YP_003535440.1|	-	1.9e-14	53.9	0.1	2.8e-14	53.3	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655543|ref|YP_003535440.1|	-	2.5e-13	50.5	0.3	3.6e-13	50.0	0.2	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655543|ref|YP_003535440.1|	-	1.4e-11	44.4	1.1	2e-11	43.9	0.7	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655543|ref|YP_003535440.1|	-	8.5e-11	42.2	0.1	1.2e-10	41.7	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655543|ref|YP_003535440.1|	-	9.7e-09	35.1	0.0	1.1e-08	34.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292655543|ref|YP_003535440.1|	-	1.3e-07	31.1	0.0	1.9e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|292655543|ref|YP_003535440.1|	-	3e-06	27.5	0.1	4.8e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.6	gi|292655543|ref|YP_003535440.1|	-	5.3e-06	25.6	0.1	6.8e-06	25.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Ubie_methyltran	PF01209.13	gi|292655543|ref|YP_003535440.1|	-	1.7e-05	24.0	0.0	2.2e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_4	PF02390.12	gi|292655543|ref|YP_003535440.1|	-	2.3e-05	23.5	0.0	8.7e-05	21.6	0.0	1.7	2	0	0	2	2	2	1	Putative	methyltransferase
CMAS	PF02353.15	gi|292655543|ref|YP_003535440.1|	-	3.7e-05	22.9	0.0	4.8e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Met_10	PF02475.11	gi|292655543|ref|YP_003535440.1|	-	4.5e-05	23.1	0.0	5.8e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
PCMT	PF01135.14	gi|292655543|ref|YP_003535440.1|	-	9.6e-05	22.0	0.0	0.00014	21.4	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_24	PF13578.1	gi|292655543|ref|YP_003535440.1|	-	0.00018	22.3	0.3	0.00026	21.7	0.2	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|292655543|ref|YP_003535440.1|	-	0.0027	16.8	0.2	0.0033	16.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.1	gi|292655543|ref|YP_003535440.1|	-	0.033	13.8	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292655543|ref|YP_003535440.1|	-	0.037	13.0	0.0	0.048	12.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
tRNA_U5-meth_tr	PF05958.6	gi|292655543|ref|YP_003535440.1|	-	0.037	12.7	0.0	0.044	12.4	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_8	PF05148.10	gi|292655543|ref|YP_003535440.1|	-	0.081	12.5	0.1	0.55	9.8	0.0	1.9	1	1	0	1	1	1	0	Hypothetical	methyltransferase
NUDIX	PF00293.23	gi|292655545|ref|YP_003535442.1|	-	7.6e-19	67.6	0.3	9.1e-19	67.4	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
Ribosomal_S10	PF00338.17	gi|292655546|ref|YP_003535443.1|	-	8.7e-12	44.7	0.0	1e-11	44.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
S1	PF00575.18	gi|292655547|ref|YP_003535444.1|	-	0.086	12.9	1.3	0.24	11.5	0.9	1.8	1	1	0	1	1	1	0	S1	RNA	binding	domain
Na_H_antiporter	PF03553.9	gi|292655548|ref|YP_003535445.1|	-	7.1e-29	100.7	44.2	8.2e-15	54.6	12.4	2.6	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Peptidase_M20	PF01546.23	gi|292655549|ref|YP_003535446.1|	-	2.7e-20	72.6	5.7	5.1e-20	71.7	4.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292655549|ref|YP_003535446.1|	-	1.7e-08	34.2	0.6	4.4e-08	32.8	0.4	1.7	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
HATPase_c	PF02518.21	gi|292655550|ref|YP_003535447.1|	-	7.4e-18	64.2	0.4	3.8e-17	61.9	0.3	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292655550|ref|YP_003535447.1|	-	1.8e-11	43.8	1.2	3.2e-11	43.0	0.8	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.1	gi|292655550|ref|YP_003535447.1|	-	0.00035	20.3	0.0	0.001	18.8	0.0	1.8	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|292655550|ref|YP_003535447.1|	-	0.011	15.3	0.0	0.022	14.4	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DAO	PF01266.19	gi|292655551|ref|YP_003535448.1|	-	5.4e-12	45.2	6.8	7e-06	25.1	0.5	2.5	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.9	gi|292655551|ref|YP_003535448.1|	-	6e-12	44.9	0.8	4e-07	29.0	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_2	PF00890.19	gi|292655551|ref|YP_003535448.1|	-	6.6e-11	41.7	3.7	1.9e-06	26.9	1.4	2.4	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|292655551|ref|YP_003535448.1|	-	3.1e-10	39.6	6.2	5.3e-09	35.5	4.3	2.5	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|292655551|ref|YP_003535448.1|	-	8.5e-10	38.2	2.8	8e-05	21.8	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|292655551|ref|YP_003535448.1|	-	2.9e-06	27.5	10.2	6.5e-06	26.4	0.1	2.6	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|292655551|ref|YP_003535448.1|	-	3e-06	26.3	3.1	5.9e-06	25.3	2.1	1.6	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|292655551|ref|YP_003535448.1|	-	6.6e-06	26.0	0.5	6.6e-06	26.0	0.3	3.0	3	0	0	3	3	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|292655551|ref|YP_003535448.1|	-	6.6e-06	26.1	0.2	6.6e-06	26.1	0.2	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655551|ref|YP_003535448.1|	-	6.6e-06	26.3	0.5	0.00049	20.2	0.1	1.9	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292655551|ref|YP_003535448.1|	-	1.3e-05	23.8	0.6	0.00012	20.6	0.2	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|292655551|ref|YP_003535448.1|	-	3e-05	23.2	3.8	6.4e-05	22.1	0.1	2.6	2	1	1	3	3	3	1	Thi4	family
3HCDH_N	PF02737.13	gi|292655551|ref|YP_003535448.1|	-	0.00012	21.7	0.0	0.00026	20.7	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|292655551|ref|YP_003535448.1|	-	0.0006	19.2	0.0	0.001	18.5	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
AlaDh_PNT_C	PF01262.16	gi|292655551|ref|YP_003535448.1|	-	0.0055	16.2	0.2	0.012	15.2	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|292655551|ref|YP_003535448.1|	-	0.032	13.1	5.8	0.064	12.1	0.1	2.7	2	1	0	2	2	2	0	Lycopene	cyclase	protein
Mqo	PF06039.10	gi|292655551|ref|YP_003535448.1|	-	0.044	11.9	0.0	0.11	10.5	0.0	1.6	2	0	0	2	2	2	0	Malate:quinone	oxidoreductase	(Mqo)
FBPase	PF00316.15	gi|292655551|ref|YP_003535448.1|	-	0.051	12.4	0.1	0.077	11.8	0.1	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
Shikimate_DH	PF01488.15	gi|292655551|ref|YP_003535448.1|	-	0.064	13.3	0.1	0.16	12.0	0.0	1.8	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|292655551|ref|YP_003535448.1|	-	0.072	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
ThiF	PF00899.16	gi|292655551|ref|YP_003535448.1|	-	0.076	12.8	1.4	0.1	12.4	0.1	1.8	2	0	0	2	2	2	0	ThiF	family
NAD_binding_7	PF13241.1	gi|292655551|ref|YP_003535448.1|	-	0.092	13.0	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
BPD_transp_2	PF02653.11	gi|292655552|ref|YP_003535449.1|	-	2e-36	125.3	32.2	2e-36	125.3	22.3	1.6	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|292655553|ref|YP_003535450.1|	-	3.5e-47	160.6	29.3	3.5e-47	160.6	20.3	2.0	1	1	1	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|292655554|ref|YP_003535451.1|	-	1.7e-48	164.4	0.0	1.3e-30	106.5	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|292655554|ref|YP_003535451.1|	-	1.8e-13	51.1	0.0	1.7e-06	28.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292655554|ref|YP_003535451.1|	-	4.6e-06	26.0	0.1	0.014	14.8	0.0	2.7	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
Bac_DnaA	PF00308.13	gi|292655554|ref|YP_003535451.1|	-	2e-05	24.3	0.5	5.8e-05	22.8	0.0	1.9	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_15	PF13175.1	gi|292655554|ref|YP_003535451.1|	-	0.00021	20.4	0.0	0.38	9.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|292655554|ref|YP_003535451.1|	-	0.00079	18.6	0.0	0.056	12.6	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|292655554|ref|YP_003535451.1|	-	0.006	16.9	0.0	0.024	14.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|292655554|ref|YP_003535451.1|	-	0.0068	15.6	0.0	3.8	6.6	0.0	3.0	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|292655554|ref|YP_003535451.1|	-	0.11	12.6	0.4	2.4	8.3	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_30	PF13604.1	gi|292655554|ref|YP_003535451.1|	-	0.12	11.9	0.1	0.59	9.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|292655554|ref|YP_003535451.1|	-	0.19	11.1	0.4	2.8	7.3	0.0	2.5	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
Bmp	PF02608.9	gi|292655555|ref|YP_003535452.1|	-	3.1e-63	213.3	6.1	3.8e-63	213.0	4.3	1.1	1	0	0	1	1	1	1	Basic	membrane	protein
TAT_signal	PF10518.4	gi|292655555|ref|YP_003535452.1|	-	0.0056	16.5	1.6	0.0056	16.5	1.1	2.2	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PLDc	PF00614.17	gi|292655555|ref|YP_003535452.1|	-	0.2	11.5	0.5	6.1	6.7	0.0	2.8	2	1	0	2	2	2	0	Phospholipase	D	Active	site	motif
PGM_PMM_I	PF02878.11	gi|292655556|ref|YP_003535453.1|	-	8.6e-36	122.4	0.1	2.1e-35	121.1	0.0	1.6	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|292655556|ref|YP_003535453.1|	-	1.5e-22	79.9	0.5	3.4e-22	78.7	0.2	1.7	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|292655556|ref|YP_003535453.1|	-	2.5e-10	40.1	0.1	1.1e-09	38.0	0.0	2.1	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.11	gi|292655556|ref|YP_003535453.1|	-	0.0024	17.8	0.0	0.0055	16.7	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Acylphosphatase	PF00708.13	gi|292655557|ref|YP_003535454.1|	-	2.8e-27	94.6	0.0	2.9e-27	94.5	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
DUF429	PF04250.8	gi|292655560|ref|YP_003535457.1|	-	3.8e-45	153.7	11.1	1.9e-42	144.8	7.7	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
HTH_20	PF12840.2	gi|292655561|ref|YP_003535458.1|	-	2e-05	24.2	0.5	5.2e-05	22.9	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292655561|ref|YP_003535458.1|	-	0.00012	21.5	0.6	0.00044	19.7	0.2	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655561|ref|YP_003535458.1|	-	0.0007	19.2	0.3	0.0022	17.5	0.2	1.9	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|292655561|ref|YP_003535458.1|	-	0.00074	19.7	0.0	0.0018	18.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_1	PF00126.22	gi|292655561|ref|YP_003535458.1|	-	0.0022	17.7	0.1	0.0049	16.5	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.1	gi|292655561|ref|YP_003535458.1|	-	0.0041	16.8	0.0	0.011	15.4	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292655561|ref|YP_003535458.1|	-	0.0045	16.6	0.1	0.0084	15.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.4	gi|292655561|ref|YP_003535458.1|	-	0.015	15.2	0.0	0.085	12.7	0.0	2.2	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_29	PF13551.1	gi|292655561|ref|YP_003535458.1|	-	0.027	14.6	0.0	0.06	13.4	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
TrmB	PF01978.14	gi|292655561|ref|YP_003535458.1|	-	0.034	13.8	0.0	0.062	13.0	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|292655561|ref|YP_003535458.1|	-	0.037	13.4	0.0	0.097	12.0	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF3117	PF11314.3	gi|292655561|ref|YP_003535458.1|	-	0.041	13.4	0.1	0.16	11.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3117)
Rrf2	PF02082.15	gi|292655561|ref|YP_003535458.1|	-	0.052	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.1	gi|292655561|ref|YP_003535458.1|	-	0.058	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|292655561|ref|YP_003535458.1|	-	0.091	12.8	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DoxX	PF07681.7	gi|292655562|ref|YP_003535459.1|	-	1.1e-09	38.6	12.3	1.1e-09	38.6	8.5	1.7	2	0	0	2	2	2	1	DoxX
HR_lesion	PF05514.6	gi|292655562|ref|YP_003535459.1|	-	0.00058	19.6	1.1	0.002	17.9	0.1	1.9	1	1	1	2	2	2	1	HR-like	lesion-inducing
SURF4	PF02077.10	gi|292655562|ref|YP_003535459.1|	-	0.034	13.4	0.2	0.051	12.9	0.1	1.2	1	0	0	1	1	1	0	SURF4	family
Flavin_Reduct	PF01613.13	gi|292655563|ref|YP_003535460.1|	-	1.1e-26	93.5	0.4	1.4e-26	93.2	0.3	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
RskA	PF10099.4	gi|292655564|ref|YP_003535461.1|	-	0.0058	16.3	0.6	0.015	15.0	0.4	1.7	1	0	0	1	1	1	1	Anti-sigma-K	factor	rskA
Herpes_gE	PF02480.11	gi|292655564|ref|YP_003535461.1|	-	0.059	11.6	0.0	0.091	11.0	0.0	1.2	1	0	0	1	1	1	0	Alphaherpesvirus	glycoprotein	E
Polyketide_cyc2	PF10604.4	gi|292655565|ref|YP_003535462.1|	-	1.3e-14	54.5	8.1	1.6e-14	54.2	5.6	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|292655565|ref|YP_003535462.1|	-	2.6e-05	24.2	0.4	3.7e-05	23.7	0.3	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
GHMP_kinases_N	PF00288.21	gi|292655566|ref|YP_003535463.1|	-	6.9e-07	29.2	3.0	7.3e-06	25.9	2.2	2.2	1	1	1	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|292655566|ref|YP_003535463.1|	-	0.0019	18.3	0.0	0.0041	17.2	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
TarH	PF02203.10	gi|292655566|ref|YP_003535463.1|	-	0.065	13.0	1.8	0.09	12.6	0.9	1.4	1	1	0	1	1	1	0	Tar	ligand	binding	domain	homologue
Pyr_redox	PF00070.22	gi|292655567|ref|YP_003535464.1|	-	1.5e-15	57.3	1.1	3.7e-11	43.2	0.3	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292655567|ref|YP_003535464.1|	-	1.6e-11	44.4	0.1	4.6e-11	42.9	0.1	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292655567|ref|YP_003535464.1|	-	1e-06	27.9	7.9	0.025	13.4	0.1	3.9	4	0	0	4	4	4	3	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655567|ref|YP_003535464.1|	-	2e-05	24.7	2.3	0.0029	17.6	0.4	3.2	1	1	3	4	4	4	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|292655567|ref|YP_003535464.1|	-	2.5e-05	24.1	4.1	1.6	8.5	0.1	3.5	2	2	1	3	3	3	3	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|292655567|ref|YP_003535464.1|	-	0.0003	20.7	0.1	0.62	10.1	0.0	3.2	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
Saccharop_dh	PF03435.13	gi|292655567|ref|YP_003535464.1|	-	0.014	14.4	0.2	0.02	13.8	0.1	1.3	1	1	0	1	1	1	0	Saccharopine	dehydrogenase
TrkA_N	PF02254.13	gi|292655567|ref|YP_003535464.1|	-	0.014	15.3	0.2	3.3	7.7	0.0	3.0	2	1	1	3	3	3	0	TrkA-N	domain
Lycopene_cycl	PF05834.7	gi|292655567|ref|YP_003535464.1|	-	0.68	8.7	3.9	4.6	6.0	0.0	2.7	2	1	1	3	3	3	0	Lycopene	cyclase	protein
DUF4147	PF13660.1	gi|292655567|ref|YP_003535464.1|	-	3.3	6.7	6.8	0.19	10.7	0.1	2.3	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4147)
HATPase_c	PF02518.21	gi|292655568|ref|YP_003535465.1|	-	3.6e-17	62.0	0.0	6.7e-17	61.2	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|292655568|ref|YP_003535465.1|	-	4e-09	36.4	3.9	2.7e-06	27.4	0.5	3.4	2	1	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.1	gi|292655568|ref|YP_003535465.1|	-	0.00066	19.4	0.5	0.0037	17.0	0.0	2.4	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.1	gi|292655568|ref|YP_003535465.1|	-	0.00073	19.8	0.0	0.17	12.2	0.0	2.6	1	1	0	1	1	1	1	PAS	domain
PAS_7	PF12860.2	gi|292655568|ref|YP_003535465.1|	-	0.0016	18.3	0.0	0.63	10.0	0.0	2.5	1	1	0	2	2	2	1	PAS	fold
SPOB_a	PF14689.1	gi|292655568|ref|YP_003535465.1|	-	0.0071	15.8	0.1	0.014	14.9	0.1	1.4	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
7TMR-DISM_7TM	PF07695.6	gi|292655568|ref|YP_003535465.1|	-	0.017	14.7	12.8	0.027	14.1	8.9	1.3	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
PAS	PF00989.19	gi|292655568|ref|YP_003535465.1|	-	0.021	14.5	0.0	0.13	12.0	0.0	2.1	1	1	0	2	2	2	0	PAS	fold
PAS_8	PF13188.1	gi|292655568|ref|YP_003535465.1|	-	0.036	13.9	0.0	0.12	12.3	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
HisKA	PF00512.20	gi|292655568|ref|YP_003535465.1|	-	0.06	13.3	2.1	0.16	11.9	1.4	1.8	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
Peptidase_M50B	PF13398.1	gi|292655568|ref|YP_003535465.1|	-	0.69	9.2	10.1	0.069	12.5	3.2	1.9	2	0	0	2	2	2	0	Peptidase	M50B-like
5TM-5TMR_LYT	PF07694.7	gi|292655568|ref|YP_003535465.1|	-	1	8.6	6.9	0.084	12.2	0.7	2.1	2	1	0	2	2	2	0	5TMR	of	5TMR-LYT
HAD_2	PF13419.1	gi|292655569|ref|YP_003535466.1|	-	7.8e-30	104.3	1.1	9.1e-30	104.1	0.8	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292655569|ref|YP_003535466.1|	-	3.6e-12	45.8	0.1	7.8e-12	44.7	0.0	1.6	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|292655569|ref|YP_003535466.1|	-	3.9e-11	43.7	2.5	4.7e-10	40.2	1.7	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292655569|ref|YP_003535466.1|	-	3.1e-05	24.2	0.1	3.7e-05	23.9	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NIF	PF03031.13	gi|292655569|ref|YP_003535466.1|	-	0.082	12.5	0.0	0.73	9.4	0.0	2.0	2	0	0	2	2	2	0	NLI	interacting	factor-like	phosphatase
APH	PF01636.18	gi|292655570|ref|YP_003535467.1|	-	7.6e-14	52.0	12.4	8.4e-14	51.8	8.1	1.4	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Fructosamin_kin	PF03881.9	gi|292655570|ref|YP_003535467.1|	-	0.0041	16.1	0.0	0.007	15.3	0.0	1.3	1	0	0	1	1	1	1	Fructosamine	kinase
DUF318	PF03773.8	gi|292655571|ref|YP_003535468.1|	-	2.1e-43	148.4	2.4	3e-43	147.9	1.6	1.2	1	0	0	1	1	1	1	Predicted	permease
YHS	PF04945.8	gi|292655571|ref|YP_003535468.1|	-	2.5e-14	52.8	1.1	5e-14	51.8	0.8	1.5	1	0	0	1	1	1	1	YHS	domain
Ribosomal_L24e	PF01246.15	gi|292655571|ref|YP_003535468.1|	-	0.00014	21.5	0.2	0.00056	19.7	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	protein	L24e
zf-FCS	PF06467.9	gi|292655571|ref|YP_003535468.1|	-	0.003	17.1	0.3	0.0056	16.2	0.2	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.5	gi|292655571|ref|YP_003535468.1|	-	0.062	13.4	0.1	0.11	12.7	0.1	1.3	1	0	0	1	1	1	0	Archaeal	TRASH	domain
DUF4244	PF14029.1	gi|292655571|ref|YP_003535468.1|	-	0.32	10.1	3.7	26	3.9	0.0	3.9	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF4244)
HTH_10	PF04967.7	gi|292655572|ref|YP_003535469.1|	-	1.3e-18	66.2	0.1	2.3e-18	65.5	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|292655572|ref|YP_003535469.1|	-	0.00037	19.8	0.1	0.011	15.1	0.0	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|292655572|ref|YP_003535469.1|	-	0.0016	17.7	1.6	0.0048	16.1	0.7	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_37	PF13744.1	gi|292655572|ref|YP_003535469.1|	-	0.0032	17.2	0.1	0.0057	16.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655572|ref|YP_003535469.1|	-	0.0038	16.8	0.1	0.01	15.4	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292655572|ref|YP_003535469.1|	-	0.015	14.6	0.0	0.029	13.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.14	gi|292655572|ref|YP_003535469.1|	-	0.015	15.2	0.0	0.029	14.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_1	PF00126.22	gi|292655572|ref|YP_003535469.1|	-	0.04	13.6	0.3	0.11	12.2	0.2	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r3	PF04539.11	gi|292655572|ref|YP_003535469.1|	-	0.049	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Sigma-70	region	3
TetR_N	PF00440.18	gi|292655572|ref|YP_003535469.1|	-	0.05	13.2	0.0	0.14	11.8	0.0	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_26	PF13443.1	gi|292655572|ref|YP_003535469.1|	-	0.062	13.5	0.0	0.13	12.4	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
MarR	PF01047.17	gi|292655572|ref|YP_003535469.1|	-	0.074	12.7	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|292655572|ref|YP_003535469.1|	-	0.1	12.6	0.0	0.72	9.9	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF2493	PF10686.4	gi|292655573|ref|YP_003535470.1|	-	0.0049	16.3	0.1	0.0061	16.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2493)
ADH_zinc_N_2	PF13602.1	gi|292655574|ref|YP_003535471.1|	-	3.8e-19	69.8	0.0	4.6e-19	69.5	0.0	1.0	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.21	gi|292655574|ref|YP_003535471.1|	-	8e-05	22.2	0.0	0.0044	16.5	0.0	2.4	3	0	0	3	3	3	1	Zinc-binding	dehydrogenase
Phage_integrase	PF00589.17	gi|292655575|ref|YP_003535472.1|	-	6.1e-10	39.0	0.0	2.2e-08	33.9	0.0	2.5	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|292655575|ref|YP_003535472.1|	-	6.8e-08	32.5	0.2	2.6e-07	30.6	0.0	2.2	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|292655575|ref|YP_003535472.1|	-	0.00076	19.7	0.1	0.027	14.7	0.0	2.7	2	1	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Mrr_N	PF14338.1	gi|292655576|ref|YP_003535473.1|	-	4.9e-05	23.3	0.0	0.00033	20.6	0.0	1.8	1	1	1	2	2	2	1	Mrr	N-terminal	domain
DUF2161	PF09929.4	gi|292655576|ref|YP_003535473.1|	-	0.00043	20.1	0.0	0.00055	19.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2161)
HTH_24	PF13412.1	gi|292655576|ref|YP_003535473.1|	-	0.00054	19.2	0.0	0.00076	18.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|292655576|ref|YP_003535473.1|	-	0.001	18.8	0.0	0.0016	18.2	0.0	1.3	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.2	gi|292655576|ref|YP_003535473.1|	-	0.0026	17.3	0.0	0.0038	16.8	0.0	1.4	1	1	0	1	1	1	1	MarR	family
Phage_rep_org_N	PF09681.5	gi|292655576|ref|YP_003535473.1|	-	0.042	13.4	0.0	0.046	13.2	0.0	1.1	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF4095	PF13338.1	gi|292655576|ref|YP_003535473.1|	-	0.072	13.2	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4095)
DUF3052	PF11253.3	gi|292655578|ref|YP_003535475.1|	-	0.098	12.2	0.7	0.16	11.5	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
Imm37	PF15598.1	gi|292655579|ref|YP_003535476.1|	-	0.029	14.2	0.7	0.093	12.5	0.4	1.9	1	1	1	2	2	2	0	Immunity	protein	37
DUF3530	PF12048.3	gi|292655582|ref|YP_003535479.1|	-	0.0011	18.0	0.2	0.0014	17.6	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3530)
DUF1180	PF06679.7	gi|292655582|ref|YP_003535479.1|	-	0.074	12.9	1.4	0.13	12.1	1.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
MarB	PF13999.1	gi|292655582|ref|YP_003535479.1|	-	0.14	11.7	0.6	0.24	11.0	0.4	1.3	1	0	0	1	1	1	0	MarB	protein
Gly-zipper_Omp	PF13488.1	gi|292655582|ref|YP_003535479.1|	-	4.9	6.8	9.4	7.4	6.2	3.7	2.5	2	0	0	2	2	2	0	Glycine	zipper
SoxE	PF06525.6	gi|292655582|ref|YP_003535479.1|	-	7.4	5.8	6.4	25	4.0	1.7	2.2	1	1	1	2	2	2	0	Sulfocyanin	(SoxE)
CR6_interact	PF10147.4	gi|292655584|ref|YP_003535481.1|	-	3.2	6.9	6.3	3.7	6.8	1.3	2.4	3	0	0	3	3	3	0	Growth	arrest	and	DNA-damage-inducible	proteins-interacting	protein	1
PAP2	PF01569.16	gi|292655585|ref|YP_003535482.1|	-	0.079	12.6	2.2	0.11	12.1	1.5	1.5	1	1	0	1	1	1	0	PAP2	superfamily
DoxX	PF07681.7	gi|292655585|ref|YP_003535482.1|	-	0.44	11.0	4.6	8.7	6.8	0.2	2.3	2	0	0	2	2	2	0	DoxX
UbiA	PF01040.13	gi|292655588|ref|YP_003535485.1|	-	3.3e-42	144.4	21.7	4.1e-42	144.1	15.0	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF835	PF05763.7	gi|292655589|ref|YP_003535486.1|	-	0.0063	16.0	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
CoA_binding_2	PF13380.1	gi|292655590|ref|YP_003535487.1|	-	3.6e-37	127.0	0.0	4.1e-37	126.8	0.0	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|292655590|ref|YP_003535487.1|	-	2.7e-05	24.6	0.0	3.7e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	CoA	binding	domain
SseB_C	PF14581.1	gi|292655590|ref|YP_003535487.1|	-	0.043	13.6	0.0	0.076	12.8	0.0	1.4	1	0	0	1	1	1	0	SseB	protein	C-terminal	domain
SIS	PF01380.17	gi|292655590|ref|YP_003535487.1|	-	0.058	12.9	0.0	0.069	12.7	0.0	1.2	1	0	0	1	1	1	0	SIS	domain
TusA	PF01206.12	gi|292655590|ref|YP_003535487.1|	-	0.12	12.0	0.0	0.19	11.3	0.0	1.4	1	0	0	1	1	1	0	Sulfurtransferase	TusA
PALP	PF00291.20	gi|292655591|ref|YP_003535488.1|	-	9.7e-51	172.8	0.5	1.1e-50	172.6	0.3	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Cep57_CLD_2	PF14197.1	gi|292655592|ref|YP_003535489.1|	-	7.2e-05	22.6	2.7	0.00013	21.8	1.9	1.3	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	PPC89
DegS	PF05384.6	gi|292655592|ref|YP_003535489.1|	-	0.0016	17.7	2.6	0.0017	17.5	1.8	1.1	1	0	0	1	1	1	1	Sensor	protein	DegS
Atg14	PF10186.4	gi|292655592|ref|YP_003535489.1|	-	0.0035	16.3	1.6	0.004	16.1	1.1	1.1	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Snapin_Pallidin	PF14712.1	gi|292655592|ref|YP_003535489.1|	-	0.0038	17.5	0.8	0.0069	16.6	0.5	1.4	1	0	0	1	1	1	1	Snapin/Pallidin
GldM_N	PF12081.3	gi|292655592|ref|YP_003535489.1|	-	0.0041	16.6	1.3	0.0047	16.4	0.9	1.1	1	0	0	1	1	1	1	GldM	N-terminal	domain
CENP-F_leu_zip	PF10473.4	gi|292655592|ref|YP_003535489.1|	-	0.0042	16.9	2.0	0.0052	16.6	1.4	1.2	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.6	gi|292655592|ref|YP_003535489.1|	-	0.0048	15.6	2.4	0.0051	15.5	1.6	1.0	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Med9	PF07544.8	gi|292655592|ref|YP_003535489.1|	-	0.013	15.1	2.2	0.013	15.1	1.5	1.4	2	0	0	2	2	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF2802	PF10975.3	gi|292655592|ref|YP_003535489.1|	-	0.017	14.8	5.6	0.017	14.8	2.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2802)
TPR_MLP1_2	PF07926.7	gi|292655592|ref|YP_003535489.1|	-	0.017	14.8	5.7	0.026	14.2	3.6	1.6	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
Reo_sigmaC	PF04582.7	gi|292655592|ref|YP_003535489.1|	-	0.019	14.1	0.3	0.019	14.1	0.2	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
DUF711	PF05167.7	gi|292655592|ref|YP_003535489.1|	-	0.022	13.4	1.8	0.026	13.2	1.2	1.0	1	0	0	1	1	1	0	Uncharacterised	ACR	(DUF711)
LOH1CR12	PF10158.4	gi|292655592|ref|YP_003535489.1|	-	0.023	14.4	0.3	0.036	13.8	0.2	1.3	1	1	0	1	1	1	0	Tumour	suppressor	protein
DUF972	PF06156.8	gi|292655592|ref|YP_003535489.1|	-	0.028	14.7	3.0	0.033	14.5	2.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
TBPIP	PF07106.8	gi|292655592|ref|YP_003535489.1|	-	0.03	13.8	1.0	0.036	13.5	0.7	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF3373	PF11853.3	gi|292655592|ref|YP_003535489.1|	-	0.034	12.6	1.2	0.044	12.3	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
RmuC	PF02646.11	gi|292655592|ref|YP_003535489.1|	-	0.041	12.7	1.9	0.049	12.4	1.4	1.1	1	0	0	1	1	1	0	RmuC	family
COG2	PF06148.6	gi|292655592|ref|YP_003535489.1|	-	0.047	13.5	1.8	0.054	13.3	1.2	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
CK2S	PF15011.1	gi|292655592|ref|YP_003535489.1|	-	0.051	13.3	2.5	0.067	12.9	1.7	1.1	1	0	0	1	1	1	0	Casein	Kinase	2	substrate
DASH_Spc34	PF08657.5	gi|292655592|ref|YP_003535489.1|	-	0.056	13.1	3.3	0.063	12.9	2.3	1.1	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
Rop-like	PF05082.8	gi|292655592|ref|YP_003535489.1|	-	0.057	12.8	0.9	0.31	10.5	0.1	2.1	1	1	1	2	2	2	0	Rop-like
DUF3826	PF12875.2	gi|292655592|ref|YP_003535489.1|	-	0.06	13.0	2.3	0.074	12.7	1.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3826)
DUF4201	PF13870.1	gi|292655592|ref|YP_003535489.1|	-	0.069	12.5	2.4	0.091	12.1	1.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
ING	PF12998.2	gi|292655592|ref|YP_003535489.1|	-	0.072	13.3	0.9	0.089	13.0	0.6	1.2	1	0	0	1	1	1	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
HR1	PF02185.11	gi|292655592|ref|YP_003535489.1|	-	0.076	12.7	1.4	0.096	12.4	0.4	1.7	1	1	0	1	1	1	0	Hr1	repeat
AATF-Che1	PF13339.1	gi|292655592|ref|YP_003535489.1|	-	0.079	13.1	3.1	0.1	12.7	2.1	1.3	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
IncA	PF04156.9	gi|292655592|ref|YP_003535489.1|	-	0.088	12.3	3.2	0.11	12.1	2.2	1.2	1	0	0	1	1	1	0	IncA	protein
DUF948	PF06103.6	gi|292655592|ref|YP_003535489.1|	-	0.098	12.5	0.4	0.16	11.8	0.3	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
FbpA	PF05833.6	gi|292655592|ref|YP_003535489.1|	-	0.11	11.0	4.7	0.12	10.8	3.2	1.1	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
FlxA	PF14282.1	gi|292655592|ref|YP_003535489.1|	-	0.11	12.4	2.8	0.15	11.9	1.9	1.3	1	0	0	1	1	1	0	FlxA-like	protein
eIF3_N	PF09440.5	gi|292655592|ref|YP_003535489.1|	-	0.12	12.5	2.0	0.15	12.1	1.4	1.2	1	0	0	1	1	1	0	eIF3	subunit	6	N	terminal	domain
GP41	PF00517.12	gi|292655592|ref|YP_003535489.1|	-	0.14	11.7	0.4	0.18	11.3	0.3	1.1	1	0	0	1	1	1	0	Retroviral	envelope	protein
Ax_dynein_light	PF10211.4	gi|292655592|ref|YP_003535489.1|	-	0.16	11.7	4.9	0.2	11.5	3.4	1.1	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
DUF1664	PF07889.7	gi|292655592|ref|YP_003535489.1|	-	0.17	11.6	1.0	0.24	11.2	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Vac_Fusion	PF02346.11	gi|292655592|ref|YP_003535489.1|	-	0.19	11.1	0.9	0.28	10.6	0.7	1.2	1	0	0	1	1	1	0	Chordopoxvirus	fusion	protein
RHH_4	PF13467.1	gi|292655592|ref|YP_003535489.1|	-	0.22	11.4	1.0	0.53	10.2	0.4	1.8	1	1	1	2	2	2	0	Ribbon-helix-helix	domain
PhoU	PF01895.14	gi|292655592|ref|YP_003535489.1|	-	0.26	11.7	4.2	0.34	11.3	2.6	1.4	1	1	0	1	1	1	0	PhoU	domain
Nairo_nucleo	PF02477.10	gi|292655592|ref|YP_003535489.1|	-	0.27	9.8	1.8	0.31	9.7	1.2	1.1	1	0	0	1	1	1	0	Nucleocapsid	N	protein
Striatin	PF08232.7	gi|292655592|ref|YP_003535489.1|	-	0.28	11.4	3.5	0.41	10.9	2.4	1.3	1	1	0	1	1	1	0	Striatin	family
APG6	PF04111.7	gi|292655592|ref|YP_003535489.1|	-	0.3	10.1	4.4	0.32	10.0	3.0	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Microtub_assoc	PF07989.6	gi|292655592|ref|YP_003535489.1|	-	0.3	10.9	3.5	0.5	10.2	2.4	1.4	1	0	0	1	1	1	0	Microtubule	associated
Spc24	PF08286.6	gi|292655592|ref|YP_003535489.1|	-	0.3	10.7	6.0	0.47	10.1	4.1	1.6	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF2203	PF09969.4	gi|292655592|ref|YP_003535489.1|	-	0.34	11.1	1.8	0.42	10.8	1.2	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF2968	PF11180.3	gi|292655592|ref|YP_003535489.1|	-	0.43	9.9	7.1	0.067	12.5	1.9	1.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
EMP24_GP25L	PF01105.19	gi|292655592|ref|YP_003535489.1|	-	0.5	10.0	2.5	0.49	10.0	0.9	1.4	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
FlaC_arch	PF05377.6	gi|292655592|ref|YP_003535489.1|	-	0.58	10.1	4.5	0.78	9.6	1.0	2.0	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
YtxH	PF12732.2	gi|292655592|ref|YP_003535489.1|	-	0.8	10.1	4.1	1.2	9.5	2.8	1.6	1	1	0	1	1	1	0	YtxH-like	protein
TMF_DNA_bd	PF12329.3	gi|292655592|ref|YP_003535489.1|	-	0.85	9.4	7.5	2.5	7.9	4.4	2.2	2	1	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
MIF4G_like_2	PF09090.6	gi|292655592|ref|YP_003535489.1|	-	0.93	8.6	3.6	1.1	8.4	2.5	1.1	1	0	0	1	1	1	0	MIF4G	like
ERM	PF00769.14	gi|292655592|ref|YP_003535489.1|	-	0.94	8.9	11.1	1.3	8.5	7.7	1.2	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
DivIC	PF04977.10	gi|292655592|ref|YP_003535489.1|	-	1.2	8.6	5.6	1.1	8.8	2.8	1.7	1	1	0	1	1	1	0	Septum	formation	initiator
DivIVA	PF05103.8	gi|292655592|ref|YP_003535489.1|	-	4.3	7.3	10.8	6.6	6.7	7.5	1.3	1	1	0	1	1	1	0	DivIVA	protein
ABC2_membrane_3	PF12698.2	gi|292655593|ref|YP_003535490.1|	-	4.2e-16	58.9	0.0	6.1e-16	58.3	0.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|292655593|ref|YP_003535490.1|	-	4e-11	42.2	0.0	7.2e-11	41.4	0.0	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|292655593|ref|YP_003535490.1|	-	0.00011	21.4	6.5	0.00011	21.4	4.5	1.8	2	0	0	2	2	2	1	ABC-2	type	transporter
Nitrate_red_gam	PF02665.9	gi|292655593|ref|YP_003535490.1|	-	4.3	6.6	7.4	0.46	9.8	1.6	1.9	2	1	0	2	2	2	0	Nitrate	reductase	gamma	subunit
ABC2_membrane_3	PF12698.2	gi|292655594|ref|YP_003535491.1|	-	0.0016	17.5	17.3	0.0016	17.5	12.0	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|292655595|ref|YP_003535492.1|	-	3.5e-28	98.6	0.0	6.4e-28	97.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655595|ref|YP_003535492.1|	-	3.4e-14	53.5	0.0	4.9e-12	46.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|292655595|ref|YP_003535492.1|	-	0.00019	21.1	0.5	0.0067	16.0	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
AAA_23	PF13476.1	gi|292655595|ref|YP_003535492.1|	-	0.0003	21.2	0.1	0.00044	20.6	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
DUF4162	PF13732.1	gi|292655595|ref|YP_003535492.1|	-	0.0015	19.0	0.0	0.003	18.0	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_22	PF13401.1	gi|292655595|ref|YP_003535492.1|	-	0.0023	18.0	0.6	0.014	15.5	0.1	2.3	2	1	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|292655595|ref|YP_003535492.1|	-	0.0065	15.9	0.0	0.011	15.2	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|292655595|ref|YP_003535492.1|	-	0.0077	15.6	0.1	0.065	12.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|292655595|ref|YP_003535492.1|	-	0.0094	16.7	1.9	0.04	14.7	1.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292655595|ref|YP_003535492.1|	-	0.02	14.9	0.2	0.27	11.2	0.0	2.3	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292655595|ref|YP_003535492.1|	-	0.031	13.7	0.3	0.052	13.0	0.2	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|292655595|ref|YP_003535492.1|	-	0.035	13.5	1.2	0.28	10.5	0.1	2.3	2	1	0	3	3	3	0	AAA-like	domain
ArgK	PF03308.11	gi|292655595|ref|YP_003535492.1|	-	0.038	12.7	0.2	0.072	11.8	0.1	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_33	PF13671.1	gi|292655595|ref|YP_003535492.1|	-	0.049	13.4	0.1	0.2	11.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|292655595|ref|YP_003535492.1|	-	0.092	12.4	0.2	0.19	11.4	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|292655595|ref|YP_003535492.1|	-	0.11	12.3	0.7	0.23	11.2	0.1	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
SMC_N	PF02463.14	gi|292655595|ref|YP_003535492.1|	-	0.14	11.3	0.2	2.4	7.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_24	PF13479.1	gi|292655595|ref|YP_003535492.1|	-	0.27	10.7	0.8	1.8	8.1	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
3HCDH_N	PF02737.13	gi|292655596|ref|YP_003535493.1|	-	1.2e-62	210.7	0.3	1.6e-62	210.3	0.2	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|292655596|ref|YP_003535493.1|	-	1.2e-33	115.3	0.7	8.5e-32	109.4	0.0	2.5	2	1	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.10	gi|292655596|ref|YP_003535493.1|	-	0.0003	20.6	0.8	0.00048	19.9	0.5	1.5	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292655596|ref|YP_003535493.1|	-	0.0097	15.0	0.1	0.015	14.4	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|292655596|ref|YP_003535493.1|	-	0.014	15.7	0.1	0.03	14.7	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|292655596|ref|YP_003535493.1|	-	0.068	12.9	0.0	0.09	12.5	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
HHH_5	PF14520.1	gi|292655597|ref|YP_003535494.1|	-	5.1e-08	32.9	0.5	0.00017	21.6	0.1	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|292655597|ref|YP_003535494.1|	-	2.7e-05	24.1	0.0	8.9e-05	22.4	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|292655597|ref|YP_003535494.1|	-	0.01	15.7	0.0	0.52	10.2	0.0	2.2	2	0	0	2	2	2	0	Pathogenicity	locus
FBPase	PF00316.15	gi|292655598|ref|YP_003535495.1|	-	5.6e-66	222.5	0.0	6.6e-66	222.3	0.0	1.0	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
Inositol_P	PF00459.20	gi|292655598|ref|YP_003535495.1|	-	0.00083	18.7	0.2	0.0022	17.3	0.0	1.7	2	0	0	2	2	2	1	Inositol	monophosphatase	family
Carboxyl_trans	PF01039.17	gi|292655599|ref|YP_003535496.1|	-	1.1e-131	439.5	0.0	1.4e-131	439.2	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
DUF63	PF01889.12	gi|292655600|ref|YP_003535497.1|	-	0.019	15.0	0.2	0.024	14.7	0.1	1.1	1	0	0	1	1	1	0	Membrane	protein	of	unknown	function	DUF63
DoxX	PF07681.7	gi|292655601|ref|YP_003535498.1|	-	3.7e-09	36.8	7.4	1.1e-08	35.3	5.0	1.8	1	1	0	1	1	1	1	DoxX
VPEP	PF07589.6	gi|292655601|ref|YP_003535498.1|	-	0.0034	17.1	1.7	0.29	11.0	0.0	3.0	2	0	0	2	2	2	2	PEP-CTERM	motif
DUF3265	PF11665.3	gi|292655601|ref|YP_003535498.1|	-	0.14	12.0	2.8	0.67	9.8	2.0	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3265)
MaoC_dehydratas	PF01575.14	gi|292655602|ref|YP_003535499.1|	-	5.2e-24	83.9	0.1	7e-24	83.5	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|292655602|ref|YP_003535499.1|	-	3e-06	27.0	0.2	2e-05	24.4	0.1	1.9	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT_3	PF13622.1	gi|292655602|ref|YP_003535499.1|	-	0.095	12.4	0.0	0.11	12.2	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
ELFV_dehydrog	PF00208.16	gi|292655603|ref|YP_003535500.1|	-	5.2e-72	242.3	0.0	7.7e-72	241.7	0.0	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|292655603|ref|YP_003535500.1|	-	1.9e-52	176.3	0.0	3.7e-52	175.3	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
NAD_binding_7	PF13241.1	gi|292655603|ref|YP_003535500.1|	-	0.014	15.6	0.0	0.031	14.5	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.14	gi|292655603|ref|YP_003535500.1|	-	0.017	14.3	0.0	0.032	13.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Bac_GDH	PF05088.7	gi|292655603|ref|YP_003535500.1|	-	0.017	12.5	0.1	0.025	11.9	0.1	1.1	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
HpcH_HpaI	PF03328.9	gi|292655604|ref|YP_003535501.1|	-	1.6e-54	184.1	3.1	2.1e-54	183.7	2.2	1.1	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.1	gi|292655604|ref|YP_003535501.1|	-	7.7e-10	38.1	0.0	6e-06	25.3	0.0	2.2	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
ELFV_dehydrog	PF00208.16	gi|292655605|ref|YP_003535502.1|	-	3.9e-75	252.5	0.0	5.3e-75	252.1	0.0	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|292655605|ref|YP_003535502.1|	-	1.5e-50	170.1	0.0	2.4e-50	169.4	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|292655605|ref|YP_003535502.1|	-	0.00035	19.7	0.0	0.00074	18.7	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292655605|ref|YP_003535502.1|	-	0.0099	15.4	0.1	0.02	14.4	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
HHH_8	PF14716.1	gi|292655605|ref|YP_003535502.1|	-	0.025	14.7	0.0	0.069	13.3	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
OTCace_N	PF02729.16	gi|292655606|ref|YP_003535503.1|	-	4.7e-44	149.4	0.0	8.3e-44	148.6	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|292655606|ref|YP_003535503.1|	-	2.6e-37	128.1	0.0	3.5e-37	127.6	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PyrI	PF01948.13	gi|292655607|ref|YP_003535504.1|	-	5.6e-37	125.6	0.3	7.6e-37	125.2	0.2	1.2	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|292655607|ref|YP_003535504.1|	-	2.6e-17	61.9	0.6	4.3e-17	61.2	0.4	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
HATPase_c	PF02518.21	gi|292655608|ref|YP_003535505.1|	-	3.2e-21	75.1	0.0	1.2e-20	73.2	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|292655608|ref|YP_003535505.1|	-	1.5e-13	50.7	1.1	4.1e-13	49.3	0.1	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|292655608|ref|YP_003535505.1|	-	4.2e-13	49.5	0.0	1.5e-12	47.7	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
HisKA	PF00512.20	gi|292655608|ref|YP_003535505.1|	-	3.1e-12	46.3	1.1	1.1e-11	44.5	0.4	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|292655608|ref|YP_003535505.1|	-	1.7e-10	40.6	0.0	3.4e-10	39.6	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.19	gi|292655608|ref|YP_003535505.1|	-	2.6e-08	33.8	0.1	8.5e-08	32.1	0.1	1.8	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_3	PF08447.6	gi|292655608|ref|YP_003535505.1|	-	1.4e-06	28.2	0.0	2.8e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.1	gi|292655608|ref|YP_003535505.1|	-	6.5e-06	25.9	0.1	3.7e-05	23.4	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.2	gi|292655608|ref|YP_003535505.1|	-	0.00047	20.1	0.0	0.002	18.0	0.0	2.2	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|292655608|ref|YP_003535505.1|	-	0.0015	18.2	0.0	0.005	16.6	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|292655608|ref|YP_003535505.1|	-	0.021	14.4	0.3	0.19	11.4	0.0	2.2	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_11	PF14598.1	gi|292655608|ref|YP_003535505.1|	-	0.047	13.6	0.0	0.088	12.7	0.0	1.4	1	0	0	1	1	1	0	PAS	domain
PAS_5	PF07310.8	gi|292655608|ref|YP_003535505.1|	-	0.11	12.0	0.0	0.44	10.0	0.0	2.0	1	1	0	1	1	1	0	PAS	domain
SPOB_a	PF14689.1	gi|292655608|ref|YP_003535505.1|	-	0.16	11.5	0.1	0.28	10.7	0.0	1.4	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF4015	PF13200.1	gi|292655609|ref|YP_003535506.1|	-	9.2e-05	21.4	0.0	0.00017	20.6	0.0	1.4	1	1	0	1	1	1	1	Putative	glycosyl	hydrolase	domain
GHL6	PF14871.1	gi|292655609|ref|YP_003535506.1|	-	0.043	13.8	0.0	0.084	12.9	0.0	1.4	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
Glyco_hydro_42	PF02449.10	gi|292655609|ref|YP_003535506.1|	-	0.084	11.9	0.0	0.16	11.0	0.0	1.3	1	0	0	1	1	1	0	Beta-galactosidase
ThuA	PF06283.6	gi|292655611|ref|YP_003535508.1|	-	9.4e-51	172.5	0.2	1.1e-50	172.4	0.1	1.0	1	0	0	1	1	1	1	Trehalose	utilisation
ECH	PF00378.15	gi|292655612|ref|YP_003535509.1|	-	1.1e-45	155.7	0.1	1.3e-45	155.4	0.1	1.1	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
MR_MLE	PF01188.16	gi|292655613|ref|YP_003535510.1|	-	2.2e-18	66.5	5.6	3.1e-18	66.0	2.7	2.3	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|292655613|ref|YP_003535510.1|	-	1.9e-15	56.8	0.5	6.1e-15	55.1	0.4	1.9	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|292655613|ref|YP_003535510.1|	-	0.0012	18.8	1.3	0.0033	17.3	0.9	1.8	1	1	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.13	gi|292655614|ref|YP_003535511.1|	-	1.4e-39	135.9	23.4	1.8e-39	135.5	16.2	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
YjbE	PF11106.3	gi|292655614|ref|YP_003535511.1|	-	1.6	8.7	7.5	1.2	9.0	1.5	2.6	2	0	0	2	2	2	0	Exopolysaccharide	production	protein	YjbE
DAO	PF01266.19	gi|292655615|ref|YP_003535512.1|	-	1.7e-06	27.1	4.6	0.0083	15.0	0.2	2.3	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|292655615|ref|YP_003535512.1|	-	5.8e-05	22.2	0.2	0.00012	21.2	0.0	1.6	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292655615|ref|YP_003535512.1|	-	0.00011	22.1	0.2	0.00023	21.0	0.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|292655615|ref|YP_003535512.1|	-	0.024	14.6	0.1	0.054	13.5	0.1	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|292655615|ref|YP_003535512.1|	-	0.065	12.3	0.0	0.13	11.3	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
GIDA	PF01134.17	gi|292655615|ref|YP_003535512.1|	-	0.096	11.5	0.3	0.15	10.8	0.2	1.4	1	1	0	1	1	1	0	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|292655615|ref|YP_003535512.1|	-	0.11	11.4	2.6	0.072	12.1	0.4	1.6	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Peripla_BP_2	PF01497.13	gi|292655616|ref|YP_003535513.1|	-	1.5e-23	83.1	0.0	2.8e-23	82.2	0.0	1.4	1	0	0	1	1	1	1	Periplasmic	binding	protein
ECH	PF00378.15	gi|292655617|ref|YP_003535514.1|	-	6.2e-44	149.9	0.0	5.8e-43	146.7	0.0	1.9	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
CopD	PF05425.8	gi|292655618|ref|YP_003535515.1|	-	4.8e-05	23.5	11.8	4.8e-05	23.5	8.2	2.1	2	0	0	2	2	2	2	Copper	resistance	protein	D
CcmD	PF04995.9	gi|292655618|ref|YP_003535515.1|	-	3.6	7.3	7.1	1.8	8.3	1.2	2.7	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
DUF3792	PF12670.2	gi|292655619|ref|YP_003535516.1|	-	0.032	14.1	9.9	0.032	14.1	6.9	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3792)
DUF485	PF04341.7	gi|292655619|ref|YP_003535516.1|	-	7.1	6.4	11.4	0.081	12.6	0.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF485
INSIG	PF07281.7	gi|292655620|ref|YP_003535517.1|	-	0.027	13.7	1.0	0.045	13.0	0.3	1.7	1	1	0	1	1	1	0	Insulin-induced	protein	(INSIG)
TPP_enzyme_N	PF02776.13	gi|292655621|ref|YP_003535518.1|	-	2e-31	108.7	0.6	6.4e-31	107.1	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|292655621|ref|YP_003535518.1|	-	2.5e-08	33.6	0.0	6.5e-08	32.2	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TrbC_Ftype	PF09673.5	gi|292655621|ref|YP_003535518.1|	-	0.026	14.1	0.0	5.4	6.6	0.0	2.5	2	0	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
Chorismate_bind	PF00425.13	gi|292655622|ref|YP_003535519.1|	-	1e-73	247.8	0.0	1.3e-73	247.5	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
Oxidored_molyb	PF00174.14	gi|292655623|ref|YP_003535520.1|	-	3e-43	147.1	0.0	3.6e-43	146.9	0.0	1.0	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
UPF0058	PF01893.11	gi|292655625|ref|YP_003535522.1|	-	4.5e-33	113.1	0.5	5e-33	113.0	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF2580	PF10824.3	gi|292655625|ref|YP_003535522.1|	-	0.12	12.7	0.0	0.18	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2580)
Rhomboid	PF01694.17	gi|292655626|ref|YP_003535523.1|	-	4.2e-07	30.1	16.5	4.2e-07	30.1	11.5	2.9	3	1	0	3	3	3	1	Rhomboid	family
PSI_PsaE	PF02427.12	gi|292655626|ref|YP_003535523.1|	-	0.096	12.0	0.1	2.7	7.4	0.0	2.7	2	0	0	2	2	2	0	Photosystem	I	reaction	centre	subunit	IV	/	PsaE
YqjK	PF13997.1	gi|292655626|ref|YP_003535523.1|	-	5.9	7.1	11.5	0.041	14.0	1.2	2.6	3	0	0	3	3	3	0	YqjK-like	protein
Methyltransf_26	PF13659.1	gi|292655627|ref|YP_003535524.1|	-	2.4e-15	56.5	0.5	3.7e-15	55.9	0.3	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|292655627|ref|YP_003535524.1|	-	3e-11	43.2	0.0	4.1e-11	42.7	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|292655627|ref|YP_003535524.1|	-	4.8e-11	42.3	0.0	7.3e-11	41.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Cons_hypoth95	PF03602.10	gi|292655627|ref|YP_003535524.1|	-	5.3e-10	38.9	0.0	6.8e-10	38.6	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_18	PF12847.2	gi|292655627|ref|YP_003535524.1|	-	3.7e-09	37.1	0.4	6.5e-09	36.3	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655627|ref|YP_003535524.1|	-	3.4e-08	33.2	0.0	4.3e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|292655627|ref|YP_003535524.1|	-	5.4e-07	29.0	0.2	7.4e-07	28.5	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.1	gi|292655627|ref|YP_003535524.1|	-	1.3e-06	28.6	0.0	3.7e-06	27.2	0.0	1.8	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292655627|ref|YP_003535524.1|	-	1.8e-05	25.1	0.0	3.6e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292655627|ref|YP_003535524.1|	-	6.6e-05	22.1	0.0	0.00012	21.2	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_15	PF09445.5	gi|292655627|ref|YP_003535524.1|	-	0.0027	17.2	0.0	0.0035	16.9	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_32	PF13679.1	gi|292655627|ref|YP_003535524.1|	-	0.0029	17.3	0.0	0.0042	16.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|292655627|ref|YP_003535524.1|	-	0.0032	17.0	0.0	0.0044	16.5	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_16	PF10294.4	gi|292655627|ref|YP_003535524.1|	-	0.0033	16.9	0.1	0.0049	16.3	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
RrnaAD	PF00398.15	gi|292655627|ref|YP_003535524.1|	-	0.01	14.9	0.0	0.013	14.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
DOT1	PF08123.8	gi|292655627|ref|YP_003535524.1|	-	0.013	14.8	0.0	0.02	14.1	0.0	1.3	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
CMAS	PF02353.15	gi|292655627|ref|YP_003535524.1|	-	0.019	14.0	0.0	0.022	13.8	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_23	PF13489.1	gi|292655627|ref|YP_003535524.1|	-	0.027	14.1	0.0	0.036	13.7	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|292655627|ref|YP_003535524.1|	-	0.043	12.8	0.0	0.059	12.4	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase
Met_10	PF02475.11	gi|292655627|ref|YP_003535524.1|	-	0.047	13.2	0.0	0.06	12.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
DUF43	PF01861.11	gi|292655627|ref|YP_003535524.1|	-	0.062	12.2	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF43
PALP	PF00291.20	gi|292655627|ref|YP_003535524.1|	-	0.065	12.4	0.0	0.065	12.4	0.0	1.1	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
STAS_2	PF13466.1	gi|292655628|ref|YP_003535525.1|	-	0.002	18.1	4.5	0.011	15.6	1.3	2.2	2	0	0	2	2	2	2	STAS	domain
LTD	PF00932.14	gi|292655629|ref|YP_003535526.1|	-	2.4e-23	82.4	6.3	2.4e-23	82.4	4.4	1.8	2	0	0	2	2	2	1	Lamin	Tail	Domain
SNase	PF00565.12	gi|292655629|ref|YP_003535526.1|	-	7.7e-21	74.3	0.0	1.3e-20	73.6	0.0	1.4	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
TFIIB	PF00382.14	gi|292655630|ref|YP_003535527.1|	-	3e-46	155.1	1.8	6.7e-24	83.4	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292655630|ref|YP_003535527.1|	-	4.1e-19	67.6	1.3	6.7e-19	66.9	0.9	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|292655630|ref|YP_003535527.1|	-	0.00019	20.7	1.8	0.00036	19.8	1.2	1.5	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Ribosomal_S27e	PF01667.12	gi|292655630|ref|YP_003535527.1|	-	0.00057	19.3	0.3	0.0011	18.4	0.2	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S27
OrfB_Zn_ribbon	PF07282.6	gi|292655630|ref|YP_003535527.1|	-	0.01	15.4	0.4	0.028	14.0	0.2	1.8	2	0	0	2	2	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|292655630|ref|YP_003535527.1|	-	0.011	14.8	0.3	0.02	14.0	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HTH_23	PF13384.1	gi|292655630|ref|YP_003535527.1|	-	0.012	15.2	0.3	0.64	9.7	0.1	3.3	3	0	0	3	3	3	0	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|292655630|ref|YP_003535527.1|	-	0.012	14.9	0.8	0.3	10.4	0.0	3.4	3	1	0	3	3	3	0	Sigma-70,	region	4
DZR	PF12773.2	gi|292655630|ref|YP_003535527.1|	-	0.017	14.8	0.9	0.039	13.7	0.6	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
RRN7	PF11781.3	gi|292655630|ref|YP_003535527.1|	-	0.019	14.4	0.6	0.037	13.5	0.4	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Lar_restr_allev	PF14354.1	gi|292655630|ref|YP_003535527.1|	-	0.034	14.4	0.4	0.085	13.1	0.3	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Cyclin_C	PF02984.14	gi|292655630|ref|YP_003535527.1|	-	0.045	13.6	0.0	0.26	11.2	0.0	2.0	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
PhnA_Zn_Ribbon	PF08274.7	gi|292655630|ref|YP_003535527.1|	-	0.047	13.4	1.9	0.11	12.2	1.3	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Cyclin_N	PF00134.18	gi|292655630|ref|YP_003535527.1|	-	0.053	13.0	0.0	0.24	10.9	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HTH_3	PF01381.17	gi|292655630|ref|YP_003535527.1|	-	0.1	12.4	0.1	6.1	6.7	0.0	3.2	3	0	0	3	3	3	0	Helix-turn-helix
Elf1	PF05129.8	gi|292655630|ref|YP_003535527.1|	-	0.11	12.2	0.2	0.27	10.9	0.1	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Trm112p	PF03966.11	gi|292655630|ref|YP_003535527.1|	-	0.15	12.4	0.3	0.52	10.7	0.2	1.9	1	0	0	1	1	1	0	Trm112p-like	protein
Zn-ribbon_8	PF09723.5	gi|292655630|ref|YP_003535527.1|	-	0.16	11.9	4.5	0.45	10.4	0.7	2.4	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-CHY	PF05495.7	gi|292655630|ref|YP_003535527.1|	-	0.19	11.9	0.6	0.44	10.7	0.4	1.6	1	0	0	1	1	1	0	CHY	zinc	finger
zf-trcl	PF13451.1	gi|292655630|ref|YP_003535527.1|	-	1.7	8.3	6.4	1	9.0	0.4	2.5	1	1	1	2	2	2	0	Probable	zinc-binding	domain
PMT_2	PF13231.1	gi|292655631|ref|YP_003535528.1|	-	2.7e-06	27.3	6.8	2.7e-06	27.3	4.7	3.3	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Usp	PF00582.21	gi|292655633|ref|YP_003535530.1|	-	7.4e-38	129.9	2.4	7.4e-38	129.9	1.7	1.3	2	0	0	2	2	2	1	Universal	stress	protein	family
PTS_IIB	PF02302.12	gi|292655633|ref|YP_003535530.1|	-	0.17	12.3	0.6	0.67	10.4	0.0	2.1	1	1	1	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Fer2	PF00111.22	gi|292655634|ref|YP_003535531.1|	-	1.8e-11	43.6	2.4	2.2e-11	43.3	1.6	1.1	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|292655634|ref|YP_003535531.1|	-	0.0054	16.5	0.1	0.0058	16.4	0.1	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.4	gi|292655634|ref|YP_003535531.1|	-	0.082	12.4	0.5	0.19	11.2	0.1	1.8	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Lactamase_B	PF00753.22	gi|292655635|ref|YP_003535532.1|	-	8.5e-16	58.1	0.8	1.5e-15	57.4	0.6	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|292655635|ref|YP_003535532.1|	-	2.4e-08	34.3	0.0	4.4e-08	33.4	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
MCPsignal	PF00015.16	gi|292655636|ref|YP_003535533.1|	-	2.7e-46	157.8	46.3	2.3e-43	148.2	20.5	2.2	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.3	gi|292655636|ref|YP_003535533.1|	-	1.5e-24	86.4	2.8	7.5e-24	84.1	0.1	3.0	2	1	0	2	2	2	1	Protoglobin
DUF948	PF06103.6	gi|292655636|ref|YP_003535533.1|	-	0.00047	19.9	13.0	0.72	9.7	0.1	4.1	3	1	1	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF948)
Muted	PF14942.1	gi|292655636|ref|YP_003535533.1|	-	0.0043	16.9	10.3	0.37	10.6	3.5	2.8	2	1	0	2	2	2	2	Organelle	biogenesis,	Muted-like	protein
FH2	PF02181.18	gi|292655636|ref|YP_003535533.1|	-	0.04	12.8	7.0	0.049	12.5	1.9	2.2	2	0	0	2	2	2	0	Formin	Homology	2	Domain
DUF2408	PF10303.4	gi|292655636|ref|YP_003535533.1|	-	0.14	12.2	1.9	2.2	8.3	0.4	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2408)
V_ATPase_I	PF01496.14	gi|292655636|ref|YP_003535533.1|	-	0.17	9.6	8.7	0.27	9.0	6.0	1.3	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
BLOC1_2	PF10046.4	gi|292655636|ref|YP_003535533.1|	-	0.18	11.9	10.9	0.92	9.6	0.7	4.0	3	1	0	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
CorA	PF01544.13	gi|292655636|ref|YP_003535533.1|	-	0.23	10.4	14.0	0.15	11.1	3.8	3.2	2	1	0	3	3	3	0	CorA-like	Mg2+	transporter	protein
DASH_Duo1	PF08651.5	gi|292655636|ref|YP_003535533.1|	-	0.34	10.4	3.9	0.3	10.6	0.1	2.8	4	0	0	4	4	3	0	DASH	complex	subunit	Duo1
GvpG	PF05120.7	gi|292655636|ref|YP_003535533.1|	-	0.36	10.6	4.4	7.9	6.3	0.5	3.4	2	0	0	2	2	2	0	Gas	vesicle	protein	G
Laminin_II	PF06009.7	gi|292655636|ref|YP_003535533.1|	-	1.1	8.9	26.0	2.8	7.6	0.5	4.4	2	2	1	4	4	4	0	Laminin	Domain	II
DUF2580	PF10824.3	gi|292655636|ref|YP_003535533.1|	-	1.6	9.1	41.3	0.47	10.8	1.8	5.0	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF2580)
FlaC_arch	PF05377.6	gi|292655636|ref|YP_003535533.1|	-	1.6	8.6	7.5	2.1	8.2	0.3	3.7	3	1	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Z1	PF10593.4	gi|292655636|ref|YP_003535533.1|	-	1.8	7.7	4.9	1.1	8.3	0.8	2.3	1	1	0	2	2	2	0	Z1	domain
Tup_N	PF08581.5	gi|292655636|ref|YP_003535533.1|	-	2	8.6	5.1	1.3	9.2	0.0	3.0	3	0	0	3	3	2	0	Tup	N-terminal
AAA_13	PF13166.1	gi|292655636|ref|YP_003535533.1|	-	2.2	6.6	15.1	1.8	6.9	6.2	2.1	1	1	1	2	2	2	0	AAA	domain
DUF4200	PF13863.1	gi|292655636|ref|YP_003535533.1|	-	4	7.3	11.2	0.12	12.2	2.6	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
RmuC	PF02646.11	gi|292655636|ref|YP_003535533.1|	-	5.1	5.8	13.8	1.7	7.4	0.3	4.1	1	1	2	4	4	4	0	RmuC	family
IncA	PF04156.9	gi|292655636|ref|YP_003535533.1|	-	5.4	6.5	18.5	2.2	7.8	5.7	3.0	1	1	1	3	3	3	0	IncA	protein
Prefoldin_2	PF01920.15	gi|292655636|ref|YP_003535533.1|	-	5.8	6.7	12.9	3	7.6	0.5	3.9	3	2	1	4	4	4	0	Prefoldin	subunit
DUF1664	PF07889.7	gi|292655636|ref|YP_003535533.1|	-	6	6.6	15.9	2.5	7.9	2.7	3.8	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Herpes_UL6	PF01763.11	gi|292655636|ref|YP_003535533.1|	-	6.6	4.7	8.9	0.7	7.9	2.9	1.7	2	0	0	2	2	2	0	Herpesvirus	UL6	like
BDV_P24	PF06595.6	gi|292655636|ref|YP_003535533.1|	-	6.9	6.3	9.7	0.44	10.2	0.2	2.6	3	0	0	3	3	2	0	Borna	disease	virus	P24	protein
Reo_sigmaC	PF04582.7	gi|292655636|ref|YP_003535533.1|	-	7.5	5.6	20.6	2.6	7.1	2.2	2.5	1	1	1	3	3	3	0	Reovirus	sigma	C	capsid	protein
Rubrerythrin	PF02915.12	gi|292655637|ref|YP_003535534.1|	-	0.00045	20.5	0.3	0.0022	18.3	0.2	1.9	2	0	0	2	2	2	1	Rubrerythrin
MOSC	PF03473.12	gi|292655638|ref|YP_003535535.1|	-	7.1e-13	48.1	0.0	9.7e-13	47.7	0.0	1.2	1	0	0	1	1	1	1	MOSC	domain
PAS_4	PF08448.5	gi|292655638|ref|YP_003535535.1|	-	0.01	15.8	0.1	0.026	14.5	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
GalKase_gal_bdg	PF10509.4	gi|292655639|ref|YP_003535536.1|	-	2.7e-16	58.5	0.2	5.3e-16	57.6	0.2	1.5	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
GHMP_kinases_C	PF08544.8	gi|292655639|ref|YP_003535536.1|	-	4.1e-15	55.7	0.3	9.9e-15	54.5	0.2	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.21	gi|292655639|ref|YP_003535536.1|	-	1.5e-12	47.3	2.1	1.5e-12	47.3	1.5	2.7	3	0	0	3	3	3	1	GHMP	kinases	N	terminal	domain
MR_MLE_C	PF13378.1	gi|292655640|ref|YP_003535537.1|	-	2.9e-29	101.2	0.0	6.2e-29	100.2	0.0	1.6	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|292655640|ref|YP_003535537.1|	-	3.4e-14	52.8	0.1	1.5e-13	50.7	0.0	2.0	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MR_MLE	PF01188.16	gi|292655640|ref|YP_003535537.1|	-	1.2e-11	44.9	2.9	8.9e-11	42.1	0.0	3.3	4	0	0	4	4	4	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
SBP_bac_11	PF13531.1	gi|292655640|ref|YP_003535537.1|	-	0.0044	16.6	0.0	0.0073	15.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF3788	PF12663.2	gi|292655641|ref|YP_003535538.1|	-	0.047	13.3	0.0	0.067	12.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3788)
DUF1510	PF07423.6	gi|292655642|ref|YP_003535539.1|	-	0.014	14.7	11.4	0.015	14.7	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1510)
Hydrolase_3	PF08282.7	gi|292655643|ref|YP_003535540.1|	-	1.7e-10	40.9	0.0	0.00032	20.3	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292655643|ref|YP_003535540.1|	-	1.3e-05	25.4	0.3	0.00028	21.0	0.2	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|292655643|ref|YP_003535540.1|	-	0.0023	17.2	0.1	0.092	12.0	0.0	2.3	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
Dehydrin	PF00257.14	gi|292655644|ref|YP_003535541.1|	-	0.03	14.6	0.5	0.03	14.6	0.3	1.1	1	0	0	1	1	1	0	Dehydrin
Glypican	PF01153.14	gi|292655644|ref|YP_003535541.1|	-	0.035	12.7	0.7	0.042	12.4	0.5	1.1	1	0	0	1	1	1	0	Glypican
RHH_1	PF01402.16	gi|292655645|ref|YP_003535542.1|	-	0.00072	19.3	1.3	0.0045	16.8	0.1	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF4415	PF14384.1	gi|292655645|ref|YP_003535542.1|	-	0.14	12.3	0.1	0.19	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4415)
F_bP_aldolase	PF01116.15	gi|292655646|ref|YP_003535543.1|	-	6e-84	281.5	0.0	7.1e-84	281.2	0.0	1.0	1	0	0	1	1	1	1	Fructose-bisphosphate	aldolase	class-II
TIM-br_sig_trns	PF09370.5	gi|292655646|ref|YP_003535543.1|	-	9.1e-05	21.6	0.4	0.0082	15.2	0.0	2.6	2	1	0	2	2	2	2	TIM-barrel	signal	transduction	protein
PTS_IIB	PF02302.12	gi|292655647|ref|YP_003535544.1|	-	4e-16	59.2	0.8	7.1e-16	58.4	0.5	1.4	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
PEP-utilizers_C	PF02896.13	gi|292655648|ref|YP_003535545.1|	-	2.2e-101	338.6	0.0	2.9e-101	338.2	0.0	1.1	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.8	gi|292655648|ref|YP_003535545.1|	-	6.7e-29	100.1	0.2	6.7e-29	100.1	0.1	2.3	2	0	0	2	2	2	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.18	gi|292655648|ref|YP_003535545.1|	-	5.3e-27	93.1	0.3	1.3e-26	91.9	0.2	1.7	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
PTS-HPr	PF00381.14	gi|292655649|ref|YP_003535546.1|	-	1.6e-25	88.7	0.1	1.8e-25	88.6	0.0	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PTS_EIIA_2	PF00359.17	gi|292655650|ref|YP_003535547.1|	-	7.2e-36	123.0	0.0	8e-36	122.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
RNA_pol_Rpb2_2	PF04561.9	gi|292655650|ref|YP_003535547.1|	-	0.0041	16.5	0.6	1.1	8.6	0.0	2.1	2	0	0	2	2	2	2	RNA	polymerase	Rpb2,	domain	2
Band_3_cyto	PF07565.8	gi|292655650|ref|YP_003535547.1|	-	0.059	12.8	0.0	0.069	12.6	0.0	1.3	1	0	0	1	1	1	0	Band	3	cytoplasmic	domain
Erythro-docking	PF09277.6	gi|292655650|ref|YP_003535547.1|	-	0.71	9.5	4.5	2	8.1	0.9	2.3	2	0	0	2	2	2	0	Erythronolide	synthase,	docking
PTS_EIIC	PF02378.13	gi|292655651|ref|YP_003535548.1|	-	8.9e-21	74.0	47.4	4.2e-20	71.8	32.1	2.0	1	1	0	1	1	1	1	Phosphotransferase	system,	EIIC
DUF4112	PF13430.1	gi|292655651|ref|YP_003535548.1|	-	0.077	12.9	2.9	3.2	7.7	0.2	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4112)
PfkB	PF00294.19	gi|292655652|ref|YP_003535549.1|	-	4.8e-49	167.1	3.9	6.7e-49	166.6	2.7	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|292655652|ref|YP_003535549.1|	-	4.8e-05	22.6	0.0	7.5e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
B12-binding	PF02310.14	gi|292655652|ref|YP_003535549.1|	-	0.0084	15.9	0.1	0.38	10.6	0.0	2.6	2	0	0	2	2	2	1	B12	binding	domain
UPF0126	PF03458.8	gi|292655652|ref|YP_003535549.1|	-	0.7	9.5	3.1	0.33	10.6	0.2	1.8	2	0	0	2	2	2	0	UPF0126	domain
DeoRC	PF00455.17	gi|292655653|ref|YP_003535550.1|	-	6.5e-52	175.4	0.1	8.3e-52	175.0	0.1	1.1	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
HTH_DeoR	PF08220.7	gi|292655653|ref|YP_003535550.1|	-	8.2e-17	60.4	0.2	1.5e-16	59.6	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655653|ref|YP_003535550.1|	-	6.4e-07	28.9	0.1	1.5e-06	27.7	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.15	gi|292655653|ref|YP_003535550.1|	-	6.5e-07	28.9	0.1	1.1e-06	28.1	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292655653|ref|YP_003535550.1|	-	3e-06	26.9	0.1	7.7e-06	25.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655653|ref|YP_003535550.1|	-	3.5e-06	26.5	0.3	1.3e-05	24.7	0.2	2.0	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292655653|ref|YP_003535550.1|	-	6.9e-06	25.3	1.8	0.00018	20.8	0.1	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|292655653|ref|YP_003535550.1|	-	2.5e-05	23.8	0.0	5.9e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|292655653|ref|YP_003535550.1|	-	3.7e-05	23.0	0.1	0.00011	21.5	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|292655653|ref|YP_003535550.1|	-	6.9e-05	22.4	0.0	0.00017	21.1	0.0	1.7	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292655653|ref|YP_003535550.1|	-	0.00025	20.5	0.1	0.00053	19.5	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292655653|ref|YP_003535550.1|	-	0.00044	19.9	0.0	0.0011	18.7	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292655653|ref|YP_003535550.1|	-	0.00061	19.3	0.1	0.0015	18.1	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_12	PF08461.5	gi|292655653|ref|YP_003535550.1|	-	0.0011	18.5	0.1	0.029	14.1	0.0	2.5	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_36	PF13730.1	gi|292655653|ref|YP_003535550.1|	-	0.0015	18.5	0.0	0.0057	16.7	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|292655653|ref|YP_003535550.1|	-	0.0026	18.0	0.1	0.0077	16.5	0.0	1.8	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|292655653|ref|YP_003535550.1|	-	0.0074	16.2	0.1	0.017	15.1	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|292655653|ref|YP_003535550.1|	-	0.023	14.6	0.1	0.063	13.2	0.0	1.8	1	0	0	1	1	1	0	Transposase
DUF2250	PF10007.4	gi|292655653|ref|YP_003535550.1|	-	0.025	14.4	0.0	0.056	13.3	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RP-C	PF03428.8	gi|292655653|ref|YP_003535550.1|	-	0.048	13.1	0.0	0.11	11.9	0.0	1.6	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
DUF977	PF06163.6	gi|292655653|ref|YP_003535550.1|	-	0.078	12.7	0.1	0.14	11.9	0.0	1.5	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
Fe_dep_repress	PF01325.14	gi|292655653|ref|YP_003535550.1|	-	0.12	12.3	0.1	0.3	11.0	0.0	1.8	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.1	gi|292655653|ref|YP_003535550.1|	-	0.4	10.2	1.9	0.65	9.5	0.0	2.4	3	0	0	3	3	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292655653|ref|YP_003535550.1|	-	0.43	10.1	2.4	5.5	6.6	0.1	3.0	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Iso_dh	PF00180.15	gi|292655654|ref|YP_003535551.1|	-	2.9e-87	292.8	0.0	3.5e-87	292.5	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Aconitase_C	PF00694.14	gi|292655655|ref|YP_003535552.1|	-	1.8e-21	76.6	0.0	2.7e-21	76.0	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase	PF00330.15	gi|292655656|ref|YP_003535553.1|	-	1.2e-149	498.7	0.0	1.4e-149	498.5	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
IlvN	PF07991.7	gi|292655658|ref|YP_003535555.1|	-	3.2e-69	231.5	0.3	4.3e-69	231.1	0.2	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|292655658|ref|YP_003535555.1|	-	4.9e-55	185.4	0.0	7e-55	184.9	0.0	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|292655658|ref|YP_003535555.1|	-	9.1e-09	35.6	0.2	1.8e-08	34.6	0.2	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|292655658|ref|YP_003535555.1|	-	2.7e-07	29.9	0.0	4.9e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|292655658|ref|YP_003535555.1|	-	9.3e-06	25.5	0.0	1.7e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.11	gi|292655658|ref|YP_003535555.1|	-	0.0038	16.6	0.0	0.0065	15.9	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|292655658|ref|YP_003535555.1|	-	0.0075	15.9	0.2	0.014	15.0	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
CoA_binding_2	PF13380.1	gi|292655658|ref|YP_003535555.1|	-	0.013	15.6	2.3	0.12	12.5	0.3	2.5	2	1	1	3	3	3	0	CoA	binding	domain
NAD_binding_7	PF13241.1	gi|292655658|ref|YP_003535555.1|	-	0.016	15.4	0.1	0.14	12.4	0.0	2.4	3	0	0	3	3	3	0	Putative	NAD(P)-binding
AdoHcyase_NAD	PF00670.16	gi|292655658|ref|YP_003535555.1|	-	0.042	13.6	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Mur_ligase	PF01225.20	gi|292655658|ref|YP_003535555.1|	-	0.045	13.8	0.7	0.098	12.7	0.5	1.5	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
GFO_IDH_MocA	PF01408.17	gi|292655658|ref|YP_003535555.1|	-	0.056	13.9	0.2	0.12	12.9	0.1	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ThiF	PF00899.16	gi|292655658|ref|YP_003535555.1|	-	0.085	12.6	0.0	0.19	11.5	0.0	1.6	1	0	0	1	1	1	0	ThiF	family
NAD_Gly3P_dh_N	PF01210.18	gi|292655658|ref|YP_003535555.1|	-	0.1	12.3	0.4	0.32	10.7	0.3	1.9	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ALS_ss_C	PF10369.4	gi|292655659|ref|YP_003535556.1|	-	5e-20	71.0	0.0	8.2e-20	70.3	0.0	1.4	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.1	gi|292655659|ref|YP_003535556.1|	-	3.4e-17	61.9	0.0	2.9e-15	55.8	0.0	2.3	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|292655659|ref|YP_003535556.1|	-	1e-11	44.0	1.3	2.4e-11	42.8	0.0	2.2	3	0	0	3	3	3	1	ACT	domain
ACT_6	PF13740.1	gi|292655659|ref|YP_003535556.1|	-	0.0076	15.9	0.0	0.02	14.6	0.0	1.6	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|292655659|ref|YP_003535556.1|	-	0.07	13.4	0.0	0.14	12.5	0.0	1.5	1	1	0	1	1	1	0	ACT	domain
TPP_enzyme_N	PF02776.13	gi|292655660|ref|YP_003535557.1|	-	7.9e-52	175.1	1.0	3.6e-51	173.0	0.7	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|292655660|ref|YP_003535557.1|	-	5.9e-50	168.8	0.9	1e-49	168.0	0.0	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|292655660|ref|YP_003535557.1|	-	2.4e-40	137.4	1.0	5e-40	136.4	0.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.11	gi|292655660|ref|YP_003535557.1|	-	0.0013	18.3	0.0	0.0021	17.6	0.0	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
DUF953	PF06110.6	gi|292655660|ref|YP_003535557.1|	-	0.082	12.3	0.1	7.2	6.0	0.0	2.4	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF953)
HMGL-like	PF00682.14	gi|292655662|ref|YP_003535559.1|	-	6.9e-70	235.3	7.7	1.2e-69	234.6	5.3	1.4	1	0	0	1	1	1	1	HMGL-like
Radical_SAM	PF04055.16	gi|292655662|ref|YP_003535559.1|	-	0.00089	19.4	0.6	0.005	17.0	0.1	2.4	2	1	1	3	3	3	1	Radical	SAM	superfamily
AP_endonuc_2	PF01261.19	gi|292655662|ref|YP_003535559.1|	-	0.013	14.7	3.7	0.01	15.1	0.9	2.1	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
RHH_1	PF01402.16	gi|292655667|ref|YP_003535564.1|	-	9.3e-05	22.1	0.2	0.00027	20.7	0.0	1.7	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|292655667|ref|YP_003535564.1|	-	0.04	14.0	0.2	0.15	12.2	0.1	1.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0156)
DUF320	PF03777.8	gi|292655668|ref|YP_003535565.1|	-	0.081	12.7	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Small	secreted	domain	(DUF320)
Glycos_transf_2	PF00535.21	gi|292655669|ref|YP_003535566.1|	-	1.1e-17	64.2	0.0	2.1e-17	63.2	0.0	1.4	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292655669|ref|YP_003535566.1|	-	4e-10	39.8	0.1	5.8e-10	39.3	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|292655669|ref|YP_003535566.1|	-	2.8e-06	27.5	0.0	4.6e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF2910	PF11139.3	gi|292655669|ref|YP_003535566.1|	-	0.0036	16.4	0.2	0.0052	15.9	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2910)
Methyltransf_21	PF05050.7	gi|292655671|ref|YP_003535568.1|	-	8.9e-23	81.0	0.0	1.3e-22	80.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|292655671|ref|YP_003535568.1|	-	0.0003	21.3	0.0	0.00057	20.4	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|292655671|ref|YP_003535568.1|	-	0.087	12.4	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	Met-10+	like-protein
Ebola_NP	PF05505.7	gi|292655672|ref|YP_003535569.1|	-	0.012	13.7	0.0	0.016	13.3	0.0	1.1	1	0	0	1	1	1	0	Ebola	nucleoprotein
Prenyltrans_2	PF13249.1	gi|292655672|ref|YP_003535569.1|	-	0.07	13.5	0.1	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	Prenyltransferase-like
Glycos_transf_2	PF00535.21	gi|292655673|ref|YP_003535570.1|	-	2.3e-34	118.4	0.0	3.1e-34	118.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292655673|ref|YP_003535570.1|	-	6.1e-23	81.8	0.0	7.8e-23	81.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|292655673|ref|YP_003535570.1|	-	2e-13	50.0	0.0	2.8e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|292655673|ref|YP_003535570.1|	-	3.6e-10	39.8	0.1	4.7e-10	39.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.1	gi|292655673|ref|YP_003535570.1|	-	0.15	12.4	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Polysacc_synt_C	PF14667.1	gi|292655674|ref|YP_003535571.1|	-	4.4e-17	62.2	14.1	4.4e-17	62.2	9.8	4.5	2	2	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.1	gi|292655674|ref|YP_003535571.1|	-	1.1e-10	41.4	21.8	1.1e-10	41.4	15.1	3.1	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.12	gi|292655674|ref|YP_003535571.1|	-	8e-09	35.1	21.0	8e-09	35.1	14.6	2.6	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|292655674|ref|YP_003535571.1|	-	2.9e-08	32.5	13.6	2.9e-08	32.5	9.4	1.8	2	0	0	2	2	2	1	MviN-like	protein
FUSC-like	PF12805.2	gi|292655674|ref|YP_003535571.1|	-	0.00046	19.2	0.4	0.00046	19.2	0.3	3.1	3	1	0	4	4	4	1	FUSC-like	inner	membrane	protein	yccS
TMEM51	PF15345.1	gi|292655674|ref|YP_003535571.1|	-	1.6	8.3	3.0	1.4	8.5	0.6	1.9	2	0	0	2	2	2	0	Transmembrane	protein	51
NTP_transferase	PF00483.18	gi|292655677|ref|YP_003535574.1|	-	2e-43	148.4	0.0	2.2e-43	148.3	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|292655677|ref|YP_003535574.1|	-	8.8e-15	55.1	0.0	1e-14	54.9	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|292655677|ref|YP_003535574.1|	-	2.8e-06	27.0	0.0	7.8e-06	25.5	0.0	1.7	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|292655678|ref|YP_003535575.1|	-	3.4e-30	104.9	0.1	4.4e-30	104.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292655678|ref|YP_003535575.1|	-	4.7e-28	98.5	0.1	5.9e-28	98.2	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|292655678|ref|YP_003535575.1|	-	3e-14	52.7	0.0	6.6e-13	48.3	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|292655678|ref|YP_003535575.1|	-	9.3e-11	41.7	0.0	1.3e-10	41.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|292655678|ref|YP_003535575.1|	-	7.6e-07	28.5	0.0	1.1e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.1	gi|292655678|ref|YP_003535575.1|	-	0.092	13.0	0.1	0.17	12.2	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glycos_transf_2	PF00535.21	gi|292655679|ref|YP_003535576.1|	-	7.2e-27	94.1	0.1	1.1e-26	93.4	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292655679|ref|YP_003535576.1|	-	3.9e-16	59.5	0.1	5.3e-16	59.1	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|292655679|ref|YP_003535576.1|	-	7.9e-09	34.9	0.0	3.4e-08	32.9	0.0	1.9	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|292655679|ref|YP_003535576.1|	-	0.00065	19.4	1.1	0.00065	19.4	0.1	1.7	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_64	PF09258.5	gi|292655679|ref|YP_003535576.1|	-	0.013	14.7	0.0	0.018	14.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	64	domain
STT3	PF02516.9	gi|292655680|ref|YP_003535577.1|	-	1.4e-20	73.7	29.0	1.4e-18	67.1	16.9	3.1	2	1	0	2	2	2	1	Oligosaccharyl	transferase	STT3	subunit
PMT_2	PF13231.1	gi|292655680|ref|YP_003535577.1|	-	0.0098	15.7	0.3	0.0098	15.7	0.2	4.5	3	1	1	4	4	4	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
UDPG_MGDP_dh_N	PF03721.9	gi|292655681|ref|YP_003535578.1|	-	7.2e-53	178.7	0.1	2.3e-52	177.0	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|292655681|ref|YP_003535578.1|	-	2e-32	111.2	0.0	3.9e-32	110.3	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|292655681|ref|YP_003535578.1|	-	4.3e-27	94.3	0.2	8.1e-27	93.4	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|292655681|ref|YP_003535578.1|	-	2.4e-07	30.6	0.0	1.8e-06	27.7	0.0	2.2	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|292655681|ref|YP_003535578.1|	-	1.5e-06	28.5	0.4	0.24	11.8	0.0	3.6	3	1	0	3	3	3	2	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|292655681|ref|YP_003535578.1|	-	5.2e-06	26.2	0.0	1.4e-05	24.8	0.0	1.8	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292655681|ref|YP_003535578.1|	-	0.00063	19.3	0.0	0.0012	18.4	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.11	gi|292655681|ref|YP_003535578.1|	-	0.0024	17.3	0.0	0.0048	16.3	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.22	gi|292655681|ref|YP_003535578.1|	-	0.0045	17.3	0.2	0.014	15.7	0.1	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|292655681|ref|YP_003535578.1|	-	0.013	15.5	2.5	0.11	12.4	0.0	3.4	4	0	0	4	4	4	0	TrkA-N	domain
NAD_binding_2	PF03446.10	gi|292655681|ref|YP_003535578.1|	-	0.014	15.2	0.0	0.7	9.7	0.0	2.5	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292655681|ref|YP_003535578.1|	-	0.014	14.5	0.2	0.84	8.7	0.0	2.7	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DAO	PF01266.19	gi|292655681|ref|YP_003535578.1|	-	0.029	13.2	0.7	0.072	11.9	0.1	1.9	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
HTH_26	PF13443.1	gi|292655681|ref|YP_003535578.1|	-	0.12	12.6	0.0	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
DUF368	PF04018.8	gi|292655682|ref|YP_003535579.1|	-	9.3e-69	231.4	13.5	9.3e-69	231.4	9.4	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
HypA	PF01155.14	gi|292655683|ref|YP_003535580.1|	-	0.0014	18.2	0.3	0.0014	18.2	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|292655683|ref|YP_003535580.1|	-	0.0023	17.8	3.5	0.0046	16.8	2.4	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF2039	PF10217.4	gi|292655683|ref|YP_003535580.1|	-	0.0027	17.6	0.3	0.0028	17.6	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2039)
Zn_Tnp_IS1595	PF12760.2	gi|292655683|ref|YP_003535580.1|	-	0.0028	17.4	1.5	0.36	10.6	0.1	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DUF1272	PF06906.6	gi|292655683|ref|YP_003535580.1|	-	0.0061	16.3	0.4	0.0071	16.1	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
Prim_Zn_Ribbon	PF08273.7	gi|292655683|ref|YP_003535580.1|	-	0.012	15.7	1.5	0.39	10.8	0.1	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DnaJ_CXXCXGXG	PF00684.14	gi|292655683|ref|YP_003535580.1|	-	0.036	14.1	0.5	0.041	13.9	0.3	1.2	1	0	0	1	1	1	0	DnaJ	central	domain
DUF1451	PF07295.6	gi|292655683|ref|YP_003535580.1|	-	0.049	13.4	0.4	0.055	13.2	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
zf-HC2	PF13490.1	gi|292655683|ref|YP_003535580.1|	-	0.077	12.9	0.6	0.077	12.9	0.4	2.1	2	0	0	2	2	2	0	Putative	zinc-finger
zf-IS66	PF13005.2	gi|292655683|ref|YP_003535580.1|	-	0.092	12.7	4.9	0.15	12.0	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DZR	PF12773.2	gi|292655683|ref|YP_003535580.1|	-	0.12	12.2	1.7	0.18	11.6	1.2	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-H2C2_2	PF13465.1	gi|292655683|ref|YP_003535580.1|	-	0.13	12.6	1.8	2.5	8.5	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2	PF00096.21	gi|292655683|ref|YP_003535580.1|	-	0.49	10.8	5.0	2.6	8.5	0.2	2.2	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
RNA_POL_M_15KD	PF02150.11	gi|292655683|ref|YP_003535580.1|	-	1.3	8.7	4.0	5.6	6.7	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-TFIIB	PF13453.1	gi|292655683|ref|YP_003535580.1|	-	5.5	6.2	6.6	3.6	6.8	2.2	1.9	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
Methyltransf_11	PF08241.7	gi|292655684|ref|YP_003535581.1|	-	7e-19	68.1	0.1	1.1e-18	67.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655684|ref|YP_003535581.1|	-	3.5e-12	46.5	0.1	5.2e-12	46.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655684|ref|YP_003535581.1|	-	3.8e-10	39.5	0.0	5e-10	39.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655684|ref|YP_003535581.1|	-	2e-09	37.3	0.0	2.8e-09	36.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655684|ref|YP_003535581.1|	-	2.7e-09	37.0	0.4	4.3e-09	36.4	0.3	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292655684|ref|YP_003535581.1|	-	6.3e-09	35.2	0.0	8.7e-09	34.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|292655684|ref|YP_003535581.1|	-	4.4e-08	33.6	0.0	7.3e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655684|ref|YP_003535581.1|	-	2.5e-05	24.6	0.0	4e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292655684|ref|YP_003535581.1|	-	0.00041	19.4	0.0	0.00052	19.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.14	gi|292655684|ref|YP_003535581.1|	-	0.00058	19.9	0.0	0.0011	18.9	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_8	PF05148.10	gi|292655684|ref|YP_003535581.1|	-	0.002	17.8	0.0	0.0055	16.3	0.0	2.0	1	1	1	2	2	2	1	Hypothetical	methyltransferase
MTS	PF05175.9	gi|292655684|ref|YP_003535581.1|	-	0.002	17.5	0.0	0.003	16.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
DREV	PF05219.7	gi|292655684|ref|YP_003535581.1|	-	0.018	13.9	0.0	0.019	13.8	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_24	PF13578.1	gi|292655684|ref|YP_003535581.1|	-	0.019	15.7	0.3	0.027	15.3	0.2	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
HCV_NS4a	PF01006.15	gi|292655684|ref|YP_003535581.1|	-	0.035	13.6	0.1	0.066	12.7	0.1	1.4	1	0	0	1	1	1	0	Hepatitis	C	virus	non-structural	protein	NS4a
Methyltransf_29	PF03141.11	gi|292655684|ref|YP_003535581.1|	-	0.04	12.2	0.0	0.054	11.8	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DUF4350	PF14258.1	gi|292655684|ref|YP_003535581.1|	-	0.05	13.8	0.7	0.54	10.5	0.1	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
NodS	PF05401.6	gi|292655684|ref|YP_003535581.1|	-	0.098	12.0	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Hydrolase_3	PF08282.7	gi|292655686|ref|YP_003535583.1|	-	3.9e-26	92.1	0.0	3.7e-16	59.4	0.0	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|292655686|ref|YP_003535583.1|	-	6e-05	22.4	0.0	0.0014	18.0	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.2	gi|292655686|ref|YP_003535583.1|	-	0.00015	21.9	3.3	0.017	15.2	0.1	2.5	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292655686|ref|YP_003535583.1|	-	0.00015	22.2	4.3	0.0002	21.8	0.7	2.4	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.11	gi|292655686|ref|YP_003535583.1|	-	0.00033	19.6	0.5	0.0013	17.7	0.0	1.9	2	0	0	2	2	2	1	Trehalose-phosphatase
HAD_2	PF13419.1	gi|292655686|ref|YP_003535583.1|	-	0.0082	16.3	1.2	0.35	11.0	0.8	2.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
BMC	PF00936.14	gi|292655686|ref|YP_003535583.1|	-	0.057	13.1	2.6	3.4	7.4	0.3	2.4	2	0	0	2	2	2	0	BMC	domain
AAA_16	PF13191.1	gi|292655687|ref|YP_003535584.1|	-	5.4e-12	46.0	2.8	5.4e-12	46.0	2.0	1.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292655687|ref|YP_003535584.1|	-	0.00099	19.2	0.0	0.0017	18.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|292655687|ref|YP_003535584.1|	-	0.013	15.2	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	NTPase
Rrf2	PF02082.15	gi|292655687|ref|YP_003535584.1|	-	0.024	14.7	0.0	0.053	13.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|292655687|ref|YP_003535584.1|	-	0.04	13.5	0.0	0.13	11.8	0.0	1.9	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292655687|ref|YP_003535584.1|	-	0.045	13.2	0.1	0.15	11.6	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
AAA_19	PF13245.1	gi|292655687|ref|YP_003535584.1|	-	0.053	13.2	0.8	0.053	13.2	0.5	2.9	3	1	0	3	3	3	0	Part	of	AAA	domain
AAA	PF00004.24	gi|292655687|ref|YP_003535584.1|	-	0.086	13.0	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|292655687|ref|YP_003535584.1|	-	0.11	12.6	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
DAO	PF01266.19	gi|292655688|ref|YP_003535585.1|	-	6.5e-65	219.3	1.0	9e-65	218.9	0.7	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|292655688|ref|YP_003535585.1|	-	3e-09	36.2	3.5	2.5e-08	33.2	2.4	2.0	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292655688|ref|YP_003535585.1|	-	1.6e-08	34.6	0.2	0.00034	20.5	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|292655688|ref|YP_003535585.1|	-	2.4e-07	30.1	5.5	0.0025	16.9	0.8	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Fer2_BFD	PF04324.10	gi|292655688|ref|YP_003535585.1|	-	1.1e-06	28.5	3.8	2.5e-06	27.4	1.7	2.3	2	0	0	2	2	1	1	BFD-like	[2Fe-2S]	binding	domain
FAD_oxidored	PF12831.2	gi|292655688|ref|YP_003535585.1|	-	3.7e-05	22.9	6.0	0.00021	20.5	4.2	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655688|ref|YP_003535585.1|	-	0.00096	19.2	0.1	1.1	9.2	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|292655688|ref|YP_003535585.1|	-	0.0011	18.6	0.2	0.0024	17.5	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|292655688|ref|YP_003535585.1|	-	0.0018	18.2	0.4	0.0078	16.2	0.2	2.2	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|292655688|ref|YP_003535585.1|	-	0.0051	15.9	2.8	0.69	8.9	0.1	2.5	2	0	0	2	2	2	2	Thi4	family
Pyr_redox	PF00070.22	gi|292655688|ref|YP_003535585.1|	-	0.032	14.6	0.5	0.032	14.6	0.3	2.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
YbjQ_1	PF01906.12	gi|292655688|ref|YP_003535585.1|	-	0.053	13.9	0.0	0.14	12.6	0.0	1.6	1	0	0	1	1	1	0	Putative	heavy-metal-binding
Amino_oxidase	PF01593.19	gi|292655688|ref|YP_003535585.1|	-	0.073	12.1	0.5	0.53	9.2	0.1	2.1	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
ApbA	PF02558.11	gi|292655688|ref|YP_003535585.1|	-	0.078	12.4	0.2	0.17	11.3	0.2	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
HI0933_like	PF03486.9	gi|292655688|ref|YP_003535585.1|	-	0.11	10.8	1.6	0.15	10.4	0.1	1.9	3	0	0	3	3	3	0	HI0933-like	protein
NAD_binding_10	PF13460.1	gi|292655688|ref|YP_003535585.1|	-	0.18	11.7	2.5	0.32	10.9	0.5	2.2	2	0	0	2	2	2	0	NADH(P)-binding
GMC_oxred_N	PF00732.14	gi|292655688|ref|YP_003535585.1|	-	0.26	10.4	4.4	0.39	9.8	0.1	3.0	2	1	1	3	3	3	0	GMC	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655688|ref|YP_003535585.1|	-	0.45	9.3	1.9	1.1	8.0	0.1	2.1	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|292655688|ref|YP_003535585.1|	-	0.75	9.5	3.3	5.8	6.6	0.2	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|292655688|ref|YP_003535585.1|	-	1.6	7.5	4.1	0.54	9.0	0.6	1.8	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|292655689|ref|YP_003535586.1|	-	2.5e-28	99.0	4.9	6.3e-28	97.7	3.4	2.1	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|292655689|ref|YP_003535586.1|	-	2.3e-12	46.4	2.8	2.6e-06	26.5	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|292655689|ref|YP_003535586.1|	-	9.9e-10	38.0	1.5	8e-06	25.1	1.3	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292655689|ref|YP_003535586.1|	-	1.9e-08	34.4	0.1	0.0023	17.8	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292655689|ref|YP_003535586.1|	-	2.2e-07	29.6	0.5	0.0021	16.5	0.3	2.4	3	0	0	3	3	3	2	HI0933-like	protein
GIDA	PF01134.17	gi|292655689|ref|YP_003535586.1|	-	8.1e-07	28.2	2.7	3.2e-06	26.2	1.2	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.22	gi|292655689|ref|YP_003535586.1|	-	7.8e-05	23.0	0.2	0.0036	17.6	0.2	2.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|292655689|ref|YP_003535586.1|	-	0.01	14.8	0.3	0.85	8.6	0.3	2.2	2	0	0	2	2	2	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292655689|ref|YP_003535586.1|	-	0.021	14.4	0.7	0.19	11.2	0.1	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.1	gi|292655689|ref|YP_003535586.1|	-	0.03	14.5	2.0	0.037	14.2	0.0	2.0	2	0	0	2	2	2	0	Putative	NAD(P)-binding
NAD_binding_8	PF13450.1	gi|292655689|ref|YP_003535586.1|	-	0.041	13.8	0.8	0.14	12.1	0.5	2.0	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|292655689|ref|YP_003535586.1|	-	0.064	13.3	0.1	6	6.8	0.0	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655689|ref|YP_003535586.1|	-	0.07	12.0	0.2	0.11	11.3	0.1	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
CCG	PF02754.11	gi|292655690|ref|YP_003535587.1|	-	7.2e-23	80.3	0.9	2e-11	43.7	0.0	2.7	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|292655690|ref|YP_003535587.1|	-	2e-08	34.1	7.3	2e-08	34.1	5.1	2.7	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292655690|ref|YP_003535587.1|	-	5.8e-06	26.0	11.7	9.8e-06	25.2	5.0	3.1	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|292655690|ref|YP_003535587.1|	-	1.1e-05	25.7	9.1	1.1e-05	25.7	6.3	3.2	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|292655690|ref|YP_003535587.1|	-	2.5e-05	24.5	9.2	0.0083	16.5	0.2	3.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|292655690|ref|YP_003535587.1|	-	0.00011	22.3	15.1	0.013	15.7	9.3	3.7	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|292655690|ref|YP_003535587.1|	-	0.00086	19.6	11.6	0.00086	19.6	8.0	2.7	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|292655690|ref|YP_003535587.1|	-	0.0017	19.0	13.1	0.026	15.2	8.0	3.3	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
DUF3390	PF11870.3	gi|292655690|ref|YP_003535587.1|	-	0.03	14.2	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3390)
Fer4_21	PF14697.1	gi|292655690|ref|YP_003535587.1|	-	0.045	13.6	10.6	0.18	11.6	0.6	3.3	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
DDE_Tnp_ISAZ013	PF07592.6	gi|292655690|ref|YP_003535587.1|	-	0.12	11.0	0.0	0.19	10.4	0.0	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
zf-CSL	PF05207.8	gi|292655690|ref|YP_003535587.1|	-	1.6	8.3	0.0	1.6	8.3	0.0	3.8	4	1	0	4	4	3	0	CSL	zinc	finger
FGGY_N	PF00370.16	gi|292655691|ref|YP_003535588.1|	-	7.9e-77	257.8	0.0	1e-76	257.4	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|292655691|ref|YP_003535588.1|	-	9e-62	208.2	0.5	1.6e-61	207.4	0.3	1.4	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.15	gi|292655691|ref|YP_003535588.1|	-	1.7e-06	27.5	0.1	0.00043	19.6	0.0	2.2	2	0	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
Gly-zipper_OmpA	PF13436.1	gi|292655692|ref|YP_003535589.1|	-	0.0035	17.0	3.5	0.0035	17.0	2.4	3.0	3	0	0	3	3	3	1	Glycine-zipper	containing	OmpA-like	membrane	domain
FA_desaturase	PF00487.19	gi|292655692|ref|YP_003535589.1|	-	9.7	5.5	7.1	2.2	7.6	0.7	2.5	2	0	0	2	2	2	0	Fatty	acid	desaturase
PTS-HPr	PF00381.14	gi|292655693|ref|YP_003535590.1|	-	6.5e-26	90.0	0.1	7.2e-26	89.8	0.0	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
EIIA-man	PF03610.11	gi|292655694|ref|YP_003535591.1|	-	2.5e-21	75.9	1.8	3.1e-21	75.6	1.3	1.0	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
Dak2	PF02734.12	gi|292655695|ref|YP_003535592.1|	-	4.7e-45	153.3	2.4	1.3e-44	151.9	0.5	1.9	1	1	1	2	2	2	1	DAK2	domain
Dak1	PF02733.12	gi|292655696|ref|YP_003535593.1|	-	6.6e-106	353.5	4.1	7.5e-106	353.3	2.8	1.0	1	0	0	1	1	1	1	Dak1	domain
tRNA-synt_1	PF00133.17	gi|292655697|ref|YP_003535594.1|	-	2.8e-184	613.4	0.9	3.8e-184	613.0	0.6	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|292655697|ref|YP_003535594.1|	-	2.7e-29	102.0	0.4	2.2e-10	39.7	0.0	4.3	4	1	0	4	4	4	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|292655697|ref|YP_003535594.1|	-	9.7e-27	93.6	0.2	2.3e-26	92.3	0.2	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.1	gi|292655697|ref|YP_003535594.1|	-	0.00026	20.3	0.0	0.00067	19.0	0.0	1.7	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.13	gi|292655697|ref|YP_003535594.1|	-	0.0011	17.7	0.0	0.029	13.0	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.14	gi|292655697|ref|YP_003535594.1|	-	0.0056	15.8	0.0	0.012	14.7	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
zf-FPG_IleRS	PF06827.9	gi|292655697|ref|YP_003535594.1|	-	0.0087	15.6	0.3	0.023	14.3	0.2	1.8	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
4HBT	PF03061.17	gi|292655700|ref|YP_003535597.1|	-	3.4e-17	62.3	0.2	5.2e-17	61.7	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
MaoC_dehydratas	PF01575.14	gi|292655700|ref|YP_003535597.1|	-	0.067	12.5	0.1	0.12	11.7	0.1	1.5	1	1	0	1	1	1	0	MaoC	like	domain
DNase-RNase	PF02577.9	gi|292655701|ref|YP_003535598.1|	-	2.4e-37	127.1	0.0	2.8e-37	126.9	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
HTH_20	PF12840.2	gi|292655702|ref|YP_003535599.1|	-	5.8e-16	58.0	0.8	1.3e-15	56.9	0.6	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655702|ref|YP_003535599.1|	-	6.8e-09	35.2	0.2	1.2e-08	34.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292655702|ref|YP_003535599.1|	-	1.5e-08	33.9	0.0	2.4e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292655702|ref|YP_003535599.1|	-	7.6e-07	28.7	0.1	1.5e-06	27.7	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|292655702|ref|YP_003535599.1|	-	2.7e-05	23.7	0.1	7.3e-05	22.3	0.1	1.7	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|292655702|ref|YP_003535599.1|	-	0.00053	20.0	0.0	0.001	19.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|292655702|ref|YP_003535599.1|	-	0.0033	17.0	0.0	0.0065	16.0	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|292655702|ref|YP_003535599.1|	-	0.0045	16.6	0.0	0.0083	15.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
DUF2513	PF10711.4	gi|292655702|ref|YP_003535599.1|	-	0.0051	16.8	0.0	0.0079	16.2	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_12	PF08461.5	gi|292655702|ref|YP_003535599.1|	-	0.0071	16.0	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.1	gi|292655702|ref|YP_003535599.1|	-	0.016	15.5	0.0	0.037	14.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|292655702|ref|YP_003535599.1|	-	0.019	14.8	0.0	0.028	14.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_34	PF13601.1	gi|292655702|ref|YP_003535599.1|	-	0.03	14.3	0.0	0.063	13.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TraC_F_IV	PF11130.3	gi|292655702|ref|YP_003535599.1|	-	0.03	13.7	0.0	0.059	12.7	0.0	1.5	1	1	0	1	1	1	0	F	pilus	assembly	Type-IV	secretion	system	for	plasmid	transfer
Fe_dep_repress	PF01325.14	gi|292655702|ref|YP_003535599.1|	-	0.078	12.9	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Phage_rep_org_N	PF09681.5	gi|292655702|ref|YP_003535599.1|	-	0.099	12.2	0.0	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF1846	PF08903.6	gi|292655702|ref|YP_003535599.1|	-	0.12	10.8	0.0	0.15	10.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1846)
DUF4147	PF13660.1	gi|292655703|ref|YP_003535600.1|	-	2.5e-81	272.3	0.2	4.8e-81	271.3	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|292655703|ref|YP_003535600.1|	-	7.5e-24	83.9	1.8	1.5e-23	82.9	1.2	1.5	1	0	0	1	1	1	1	MOFRL	family
TraB	PF01963.12	gi|292655704|ref|YP_003535601.1|	-	1.8e-39	135.7	0.2	3e-21	76.0	0.0	2.2	2	0	0	2	2	2	2	TraB	family
DUF399	PF04187.8	gi|292655704|ref|YP_003535601.1|	-	0.037	13.5	0.2	0.082	12.3	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF399
Peptidase_M50	PF02163.17	gi|292655705|ref|YP_003535602.1|	-	4.8e-07	28.9	18.7	1.2e-05	24.3	12.9	2.5	1	1	0	1	1	1	1	Peptidase	family	M50
AIRS_C	PF02769.17	gi|292655707|ref|YP_003535604.1|	-	1.1e-20	74.2	0.1	1.7e-20	73.5	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|292655707|ref|YP_003535604.1|	-	2.1e-15	56.7	1.6	2.1e-15	56.7	1.1	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
p450	PF00067.17	gi|292655708|ref|YP_003535605.1|	-	9.6e-74	248.5	0.0	1.2e-73	248.2	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
CBS	PF00571.23	gi|292655709|ref|YP_003535606.1|	-	2e-20	72.2	3.2	3.4e-12	45.9	0.0	2.9	2	1	0	2	2	2	2	CBS	domain
HTH_31	PF13560.1	gi|292655709|ref|YP_003535606.1|	-	4e-11	42.9	1.1	9.3e-11	41.7	0.8	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|292655709|ref|YP_003535606.1|	-	6.1e-11	41.9	0.1	1.4e-10	40.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|292655709|ref|YP_003535606.1|	-	1.1e-08	34.9	0.0	3.2e-08	33.4	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|292655709|ref|YP_003535606.1|	-	0.00039	20.1	0.0	0.00068	19.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|292655709|ref|YP_003535606.1|	-	0.0012	18.4	0.2	0.0031	17.1	0.0	1.8	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|292655709|ref|YP_003535606.1|	-	0.027	14.6	0.0	0.049	13.8	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|292655709|ref|YP_003535606.1|	-	0.07	12.9	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF555	PF04475.7	gi|292655710|ref|YP_003535607.1|	-	2.1e-46	156.1	0.1	2.4e-46	155.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zinc_ribbon_2	PF13240.1	gi|292655710|ref|YP_003535607.1|	-	0.02	14.3	0.2	0.032	13.7	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2561	PF10812.3	gi|292655711|ref|YP_003535608.1|	-	0.016	14.8	0.2	0.016	14.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2561)
Proteasome	PF00227.21	gi|292655712|ref|YP_003535609.1|	-	6.9e-51	172.2	0.5	7.9e-51	172.0	0.3	1.0	1	0	0	1	1	1	1	Proteasome	subunit
DNA_ligase_A_M	PF01068.16	gi|292655715|ref|YP_003535612.1|	-	3.4e-45	153.9	0.0	4.8e-45	153.4	0.0	1.2	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|292655715|ref|YP_003535612.1|	-	8.1e-38	129.9	0.0	1.4e-37	129.1	0.0	1.4	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|292655715|ref|YP_003535612.1|	-	1.1e-15	57.8	0.0	2.8e-15	56.4	0.0	1.8	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
Lactamase_B_3	PF13483.1	gi|292655717|ref|YP_003535614.1|	-	5.5e-29	100.9	0.2	7e-29	100.6	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
XdhC_C	PF13478.1	gi|292655717|ref|YP_003535614.1|	-	0.042	14.1	0.1	0.11	12.7	0.0	1.7	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Abhydrolase_6	PF12697.2	gi|292655718|ref|YP_003535615.1|	-	5.1e-20	72.3	9.0	8.1e-20	71.6	6.1	1.4	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292655718|ref|YP_003535615.1|	-	1.1e-09	38.2	0.5	0.00012	21.7	1.1	2.2	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|292655718|ref|YP_003535615.1|	-	1.2e-06	28.3	3.4	5.8e-06	26.1	2.4	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Thioesterase	PF00975.15	gi|292655718|ref|YP_003535615.1|	-	0.011	15.9	0.0	0.014	15.5	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
DLH	PF01738.13	gi|292655718|ref|YP_003535615.1|	-	0.038	13.2	0.0	1.2	8.3	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Esterase	PF00756.15	gi|292655718|ref|YP_003535615.1|	-	0.062	12.7	0.1	0.089	12.1	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
UPF0227	PF05728.7	gi|292655718|ref|YP_003535615.1|	-	0.19	11.4	0.0	0.29	10.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
DUF4118	PF13493.1	gi|292655719|ref|YP_003535616.1|	-	0.18	12.0	2.3	0.2	11.8	1.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4118)
TP6A_N	PF04406.9	gi|292655720|ref|YP_003535617.1|	-	9.6e-20	70.0	0.1	1.6e-19	69.2	0.1	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
Topo-VIb_trans	PF09239.6	gi|292655721|ref|YP_003535618.1|	-	8.7e-66	220.3	0.0	2.2e-65	219.0	0.0	1.7	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.21	gi|292655721|ref|YP_003535618.1|	-	8.3e-17	60.9	0.0	2.5e-16	59.3	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|292655721|ref|YP_003535618.1|	-	1.2e-13	50.9	0.0	3.8e-13	49.2	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292655721|ref|YP_003535618.1|	-	7.6e-05	22.5	0.1	0.00079	19.2	0.0	2.6	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|292655721|ref|YP_003535618.1|	-	0.098	12.3	0.0	0.33	10.7	0.0	1.9	1	0	0	1	1	1	0	GHKL	domain
MAF_flag10	PF01973.13	gi|292655721|ref|YP_003535618.1|	-	0.12	11.8	0.0	0.22	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
DNA_gyraseB	PF00204.20	gi|292655722|ref|YP_003535619.1|	-	3.4e-60	202.1	0.2	6.1e-60	201.3	0.1	1.4	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.16	gi|292655722|ref|YP_003535619.1|	-	2.3e-29	100.9	0.0	5.4e-29	99.7	0.0	1.7	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
Toprim	PF01751.17	gi|292655722|ref|YP_003535619.1|	-	6.3e-26	90.2	0.1	1.6e-25	88.9	0.0	1.7	2	0	0	2	2	2	1	Toprim	domain
HATPase_c	PF02518.21	gi|292655722|ref|YP_003535619.1|	-	2e-19	69.3	0.1	5e-19	68.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|292655722|ref|YP_003535619.1|	-	1.6e-05	24.5	0.0	3.8e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DNA_topoisoIV	PF00521.15	gi|292655723|ref|YP_003535620.1|	-	1.2e-152	508.6	0.0	1.5e-152	508.3	0.0	1.1	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.8	gi|292655723|ref|YP_003535620.1|	-	3.7e-67	221.4	12.2	1e-12	47.1	0.5	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
NUDIX	PF00293.23	gi|292655724|ref|YP_003535621.1|	-	1.1e-14	54.2	0.1	1.3e-14	53.9	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
Arginase	PF00491.16	gi|292655725|ref|YP_003535622.1|	-	1.4e-76	257.4	5.3	1.6e-76	257.2	3.7	1.0	1	0	0	1	1	1	1	Arginase	family
IlvN	PF07991.7	gi|292655725|ref|YP_003535622.1|	-	0.026	13.8	0.0	0.059	12.7	0.0	1.6	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Epimerase	PF01370.16	gi|292655726|ref|YP_003535623.1|	-	1.1e-46	159.1	0.1	1.4e-46	158.8	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|292655726|ref|YP_003535623.1|	-	1.7e-18	66.5	0.0	2.2e-18	66.1	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|292655726|ref|YP_003535623.1|	-	4.1e-13	48.6	0.0	6.4e-13	48.0	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|292655726|ref|YP_003535623.1|	-	9.9e-12	44.3	0.0	8.7e-09	34.6	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|292655726|ref|YP_003535623.1|	-	2.2e-10	39.9	0.1	2.8e-07	29.7	0.0	2.4	3	0	0	3	3	3	2	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|292655726|ref|YP_003535623.1|	-	8.2e-07	29.0	1.7	0.003	17.4	0.0	2.6	2	1	1	3	3	3	2	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|292655726|ref|YP_003535623.1|	-	0.0001	22.3	0.0	0.00016	21.7	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|292655726|ref|YP_003535623.1|	-	0.0036	16.9	0.1	0.31	10.7	0.0	2.3	2	0	0	2	2	2	1	KR	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292655726|ref|YP_003535623.1|	-	0.023	14.1	0.2	8.2	5.7	0.0	2.7	3	0	0	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
2OG-FeII_Oxy_4	PF13661.1	gi|292655726|ref|YP_003535623.1|	-	0.049	13.2	0.2	0.11	12.1	0.2	1.5	1	0	0	1	1	1	0	2OG-Fe(II)	oxygenase	superfamily
Ldh_1_N	PF00056.18	gi|292655726|ref|YP_003535623.1|	-	0.14	12.0	0.0	0.54	10.0	0.0	1.9	2	0	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
HrcA_DNA-bdg	PF03444.10	gi|292655727|ref|YP_003535624.1|	-	6.6e-38	128.0	0.1	9.2e-38	127.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|292655727|ref|YP_003535624.1|	-	5.3e-09	36.0	0.0	8.2e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|292655727|ref|YP_003535624.1|	-	2.6e-06	26.9	0.0	3.9e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|292655727|ref|YP_003535624.1|	-	0.021	14.5	0.0	0.03	14.0	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_terminase	PF10668.4	gi|292655727|ref|YP_003535624.1|	-	0.062	13.0	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Phage	terminase	small	subunit
IFT43	PF15305.1	gi|292655727|ref|YP_003535624.1|	-	0.099	12.6	0.0	4.5	7.2	0.0	2.1	2	0	0	2	2	2	0	Intraflagellar	transport	protein	43
MarR_2	PF12802.2	gi|292655727|ref|YP_003535624.1|	-	0.13	11.8	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_38	PF13936.1	gi|292655727|ref|YP_003535624.1|	-	0.15	11.6	0.0	0.3	10.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Pyr_redox_2	PF07992.9	gi|292655728|ref|YP_003535625.1|	-	1.1e-19	71.1	0.0	2.5e-19	69.9	0.0	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292655728|ref|YP_003535625.1|	-	1.7e-07	31.5	0.2	8.7e-06	26.0	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655728|ref|YP_003535625.1|	-	1.1e-06	28.9	0.2	0.0027	17.7	0.0	3.0	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|292655728|ref|YP_003535625.1|	-	0.0088	15.6	0.6	3.7	7.0	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.1	gi|292655728|ref|YP_003535625.1|	-	0.014	15.1	1.2	2.7	7.7	0.0	2.6	3	0	0	3	3	3	0	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|292655728|ref|YP_003535625.1|	-	0.19	10.5	0.0	3.2	6.5	0.0	2.2	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
PNP_UDP_1	PF01048.15	gi|292655729|ref|YP_003535626.1|	-	1.1e-47	162.0	2.7	1.2e-47	161.8	1.9	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Peptidase_M10	PF00413.19	gi|292655730|ref|YP_003535627.1|	-	0.00052	19.7	0.0	0.0014	18.3	0.0	1.8	2	0	0	2	2	2	1	Matrixin
Reprolysin_5	PF13688.1	gi|292655730|ref|YP_003535627.1|	-	0.0012	18.7	0.0	0.0018	18.1	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.1	gi|292655730|ref|YP_003535627.1|	-	0.0013	19.2	0.0	0.0088	16.5	0.0	2.1	2	0	0	2	2	2	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.1	gi|292655730|ref|YP_003535627.1|	-	0.002	17.7	0.0	0.0029	17.1	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.1	gi|292655730|ref|YP_003535627.1|	-	0.009	16.0	0.0	0.016	15.2	0.0	1.4	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M57	PF12388.3	gi|292655730|ref|YP_003535627.1|	-	0.015	14.6	0.0	0.033	13.5	0.0	1.5	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
Peptidase_M43	PF05572.8	gi|292655730|ref|YP_003535627.1|	-	0.025	14.1	0.0	0.042	13.4	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Peptidase_M90	PF06167.7	gi|292655730|ref|YP_003535627.1|	-	0.046	13.0	0.2	0.35	10.2	0.0	2.2	3	0	0	3	3	3	0	Glucose-regulated	metallo-peptidase	M90
DUF3152	PF11350.3	gi|292655730|ref|YP_003535627.1|	-	0.15	11.5	0.1	0.89	9.0	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3152)
dCMP_cyt_deam_1	PF00383.17	gi|292655731|ref|YP_003535628.1|	-	1e-17	63.5	0.3	1.3e-17	63.3	0.2	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|292655731|ref|YP_003535628.1|	-	3e-13	49.8	0.3	4.2e-13	49.3	0.2	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.1	gi|292655731|ref|YP_003535628.1|	-	0.074	12.6	0.3	0.14	11.7	0.2	1.5	1	1	0	1	1	1	0	MafB19-like	deaminase
Flavi_NS4A	PF01350.12	gi|292655731|ref|YP_003535628.1|	-	0.076	12.5	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Flavivirus	non-structural	protein	NS4A
YwqJ-deaminase	PF14431.1	gi|292655731|ref|YP_003535628.1|	-	0.17	11.7	0.8	1.6	8.6	0.4	1.9	1	1	1	2	2	2	0	YwqJ-like	deaminase
DUF2970	PF11174.3	gi|292655732|ref|YP_003535629.1|	-	0.24	11.0	0.1	0.24	11.0	0.1	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2970)
FtsX	PF02687.16	gi|292655732|ref|YP_003535629.1|	-	0.8	9.4	6.5	1.1	8.9	4.5	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
Acetyltransf_1	PF00583.19	gi|292655734|ref|YP_003535631.1|	-	9e-09	35.2	0.1	1.4e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.1	gi|292655734|ref|YP_003535631.1|	-	0.00022	21.0	0.0	0.00083	19.2	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292655734|ref|YP_003535631.1|	-	0.0004	20.4	0.0	0.00057	20.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292655734|ref|YP_003535631.1|	-	0.0016	18.3	0.0	0.0024	17.7	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.1	gi|292655734|ref|YP_003535631.1|	-	0.0078	16.3	0.0	0.012	15.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AMP-binding	PF00501.23	gi|292655735|ref|YP_003535632.1|	-	5.4e-76	255.6	0.0	7.1e-76	255.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|292655735|ref|YP_003535632.1|	-	1.8e-19	70.4	0.1	4.8e-19	69.0	0.1	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
SDF	PF00375.13	gi|292655736|ref|YP_003535633.1|	-	2e-115	385.6	30.9	2.3e-115	385.4	21.4	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
AMP-binding	PF00501.23	gi|292655737|ref|YP_003535634.1|	-	3.3e-12	45.5	0.0	2.7e-08	32.6	0.0	2.8	2	1	1	3	3	3	2	AMP-binding	enzyme
Cupin_2	PF07883.6	gi|292655738|ref|YP_003535635.1|	-	6.1e-10	38.4	0.2	7.8e-10	38.1	0.2	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.7	gi|292655738|ref|YP_003535635.1|	-	0.00012	21.3	0.0	0.00019	20.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.14	gi|292655738|ref|YP_003535635.1|	-	0.00044	19.9	0.0	0.00052	19.7	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
AraC_binding_2	PF14525.1	gi|292655738|ref|YP_003535635.1|	-	0.00053	19.6	0.0	0.00055	19.5	0.0	1.1	1	0	0	1	1	1	1	AraC-binding-like	domain
Pirin_C	PF05726.8	gi|292655738|ref|YP_003535635.1|	-	0.049	13.6	0.0	0.062	13.3	0.0	1.1	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
CTDII	PF01556.13	gi|292655739|ref|YP_003535636.1|	-	3.9e-32	109.9	0.0	9.1e-23	79.9	0.0	2.7	3	0	0	3	3	3	2	DnaJ	C	terminal	domain
DnaJ	PF00226.26	gi|292655739|ref|YP_003535636.1|	-	4.2e-25	87.2	4.8	7.3e-25	86.4	3.3	1.4	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.14	gi|292655739|ref|YP_003535636.1|	-	2e-15	56.5	18.6	3.8e-15	55.6	12.9	1.5	1	0	0	1	1	1	1	DnaJ	central	domain
RPT	PF13446.1	gi|292655739|ref|YP_003535636.1|	-	0.058	12.8	0.2	0.11	11.9	0.1	1.4	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
DZR	PF12773.2	gi|292655739|ref|YP_003535636.1|	-	1.1	9.1	13.2	3.1	7.6	9.2	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|292655739|ref|YP_003535636.1|	-	4.5	7.0	12.5	7.1	6.3	1.8	2.3	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
HSP70	PF00012.15	gi|292655740|ref|YP_003535637.1|	-	1.9e-241	802.2	14.4	2.8e-211	702.5	7.5	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.8	gi|292655740|ref|YP_003535637.1|	-	2.4e-21	75.6	0.2	2.4e-21	75.6	0.1	2.1	2	0	0	2	2	2	1	MreB/Mbl	protein
StbA	PF06406.6	gi|292655740|ref|YP_003535637.1|	-	0.0069	15.3	0.0	0.018	14.0	0.0	1.6	1	0	0	1	1	1	1	StbA	protein
FGGY_C	PF02782.11	gi|292655740|ref|YP_003535637.1|	-	0.008	15.8	0.0	0.024	14.2	0.0	1.8	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FtsA	PF14450.1	gi|292655740|ref|YP_003535637.1|	-	0.019	14.7	0.3	15	5.4	0.0	3.8	2	1	0	2	2	2	0	Cell	division	protein	FtsA
PhyH	PF05721.8	gi|292655740|ref|YP_003535637.1|	-	0.047	13.7	1.7	0.094	12.7	0.6	1.9	2	0	0	2	2	2	0	Phytanoyl-CoA	dioxygenase	(PhyH)
Hydantoinase_A	PF01968.13	gi|292655740|ref|YP_003535637.1|	-	0.074	12.1	7.0	0.2	10.7	0.0	3.6	4	0	0	4	4	4	0	Hydantoinase/oxoprolinase
DUF2937	PF11157.3	gi|292655740|ref|YP_003535637.1|	-	3.1	7.1	5.2	1.7	7.9	1.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Cwf_Cwc_15	PF04889.7	gi|292655740|ref|YP_003535637.1|	-	3.8	7.1	16.2	9.8	5.8	11.2	1.7	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Abhydrolase_6	PF12697.2	gi|292655741|ref|YP_003535638.1|	-	1.7e-06	28.0	4.6	2.4e-06	27.5	3.2	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|292655741|ref|YP_003535638.1|	-	3.8e-06	26.7	0.0	4.8e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
GrpE	PF01025.14	gi|292655742|ref|YP_003535639.1|	-	8.9e-40	135.9	10.2	1.4e-39	135.3	7.0	1.5	1	1	0	1	1	1	1	GrpE
Fib_alpha	PF08702.5	gi|292655742|ref|YP_003535639.1|	-	0.00024	21.2	0.8	0.00038	20.5	0.6	1.3	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
ADIP	PF11559.3	gi|292655742|ref|YP_003535639.1|	-	0.0036	17.2	4.4	0.0067	16.3	3.0	1.4	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
DUF4407	PF14362.1	gi|292655742|ref|YP_003535639.1|	-	0.0042	16.1	17.1	0.0063	15.5	11.8	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
IncA	PF04156.9	gi|292655742|ref|YP_003535639.1|	-	0.0048	16.5	2.5	0.0057	16.2	1.7	1.3	1	0	0	1	1	1	1	IncA	protein
Atg14	PF10186.4	gi|292655742|ref|YP_003535639.1|	-	0.0061	15.5	1.9	0.0075	15.2	1.3	1.1	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4472	PF14739.1	gi|292655742|ref|YP_003535639.1|	-	0.018	15.5	1.7	0.042	14.3	1.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
TMF_DNA_bd	PF12329.3	gi|292655742|ref|YP_003535639.1|	-	0.019	14.7	6.2	0.038	13.7	3.4	2.1	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Syntaxin_2	PF14523.1	gi|292655742|ref|YP_003535639.1|	-	0.02	14.9	0.5	0.037	14.0	0.3	1.4	1	0	0	1	1	1	0	Syntaxin-like	protein
Striatin	PF08232.7	gi|292655742|ref|YP_003535639.1|	-	0.02	15.1	2.3	0.02	15.1	1.6	2.0	2	0	0	2	2	2	0	Striatin	family
SlyX	PF04102.7	gi|292655742|ref|YP_003535639.1|	-	0.024	14.9	3.2	0.064	13.6	2.2	1.8	1	0	0	1	1	1	0	SlyX
TFIIS_M	PF07500.9	gi|292655742|ref|YP_003535639.1|	-	0.029	14.4	2.0	0.075	13.1	1.2	1.7	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS),	central	domain
Tho2	PF11262.3	gi|292655742|ref|YP_003535639.1|	-	0.031	13.3	0.1	0.041	12.9	0.1	1.1	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
CENP-Q	PF13094.1	gi|292655742|ref|YP_003535639.1|	-	0.036	14.1	3.2	0.076	13.0	2.2	1.5	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
AAA_13	PF13166.1	gi|292655742|ref|YP_003535639.1|	-	0.046	12.1	2.0	0.064	11.7	1.4	1.2	1	0	0	1	1	1	0	AAA	domain
Mnd1	PF03962.10	gi|292655742|ref|YP_003535639.1|	-	0.055	13.1	4.4	0.08	12.6	3.0	1.4	1	0	0	1	1	1	0	Mnd1	family
PA26	PF04636.8	gi|292655742|ref|YP_003535639.1|	-	0.073	11.7	4.0	0.094	11.4	2.8	1.1	1	0	0	1	1	1	0	PA26	p53-induced	protein	(sestrin)
DUF4482	PF14818.1	gi|292655742|ref|YP_003535639.1|	-	0.075	13.6	6.9	0.036	14.7	1.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4482)
CRISPR_Cse1	PF09481.5	gi|292655742|ref|YP_003535639.1|	-	0.076	11.7	8.1	0.11	11.2	5.6	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	Cse1	(CRISPR_cse1)
SseC	PF04888.7	gi|292655742|ref|YP_003535639.1|	-	0.079	12.2	7.3	0.12	11.6	5.1	1.2	1	0	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
DivIC	PF04977.10	gi|292655742|ref|YP_003535639.1|	-	0.12	11.9	9.3	0.12	11.8	1.4	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
ATG16	PF08614.6	gi|292655742|ref|YP_003535639.1|	-	0.12	12.1	7.9	0.19	11.5	5.5	1.3	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
TMCO5	PF14992.1	gi|292655742|ref|YP_003535639.1|	-	0.13	11.3	4.5	0.19	10.8	3.1	1.2	1	0	0	1	1	1	0	TMCO5	family
Bap31	PF05529.7	gi|292655742|ref|YP_003535639.1|	-	0.13	11.6	2.9	0.22	10.9	2.0	1.4	1	1	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
DUF904	PF06005.7	gi|292655742|ref|YP_003535639.1|	-	0.15	12.4	3.3	0.27	11.5	2.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
APG6	PF04111.7	gi|292655742|ref|YP_003535639.1|	-	0.16	11.0	5.0	0.2	10.7	3.4	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Ax_dynein_light	PF10211.4	gi|292655742|ref|YP_003535639.1|	-	0.21	11.4	5.1	0.36	10.6	3.6	1.3	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
DUF812	PF05667.6	gi|292655742|ref|YP_003535639.1|	-	0.29	9.6	9.4	0.35	9.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
OmpH	PF03938.9	gi|292655742|ref|YP_003535639.1|	-	0.32	10.8	15.6	0.8	9.6	10.8	1.7	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF972	PF06156.8	gi|292655742|ref|YP_003535639.1|	-	0.37	11.1	3.2	0.81	10.0	2.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
PilJ	PF13675.1	gi|292655742|ref|YP_003535639.1|	-	0.41	10.9	14.2	0.03	14.6	3.5	2.8	2	1	1	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Rep_4	PF05797.6	gi|292655742|ref|YP_003535639.1|	-	0.52	8.9	6.0	0.85	8.2	4.2	1.3	1	0	0	1	1	1	0	Yeast	trans-acting	factor	(REP1/REP2)
ERM	PF00769.14	gi|292655742|ref|YP_003535639.1|	-	0.7	9.3	16.5	1.9	7.9	11.5	1.7	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
DUF4349	PF14257.1	gi|292655742|ref|YP_003535639.1|	-	1	8.5	18.6	0.49	9.5	10.9	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
Prefoldin_2	PF01920.15	gi|292655742|ref|YP_003535639.1|	-	1.4	8.6	9.8	0.084	12.6	0.5	2.5	2	1	2	4	4	3	0	Prefoldin	subunit
DUF334	PF03904.8	gi|292655742|ref|YP_003535639.1|	-	1.9	7.7	5.3	21	4.3	3.6	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF334)
DivIVA	PF05103.8	gi|292655742|ref|YP_003535639.1|	-	2.3	8.2	18.1	0.073	13.1	5.0	2.2	2	0	0	2	2	2	0	DivIVA	protein
HrpB7	PF09486.5	gi|292655742|ref|YP_003535639.1|	-	2.7	7.9	24.5	7.2	6.5	17.0	1.7	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
Laminin_I	PF06008.9	gi|292655742|ref|YP_003535639.1|	-	5.6	6.1	13.5	8.9	5.5	9.4	1.4	1	1	0	1	1	1	0	Laminin	Domain	I
PAC2	PF09754.4	gi|292655743|ref|YP_003535640.1|	-	3.6e-42	144.6	0.0	4.2e-42	144.4	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
Nol1_Nop2_Fmu	PF01189.12	gi|292655744|ref|YP_003535641.1|	-	9.3e-52	176.1	0.0	1.1e-51	175.9	0.0	1.0	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|292655744|ref|YP_003535641.1|	-	2.8e-06	26.9	0.0	3.9e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292655744|ref|YP_003535641.1|	-	1.8e-05	25.2	0.0	7.3e-05	23.3	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292655744|ref|YP_003535641.1|	-	5e-05	23.3	0.1	0.00011	22.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|292655744|ref|YP_003535641.1|	-	0.012	15.5	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Nol1_Nop2_Fmu_2	PF13636.1	gi|292655745|ref|YP_003535642.1|	-	8.4e-17	61.1	0.0	1e-16	60.8	0.0	1.1	1	0	0	1	1	1	1	pre-rRNA	processing	and	ribosome	biogenesis
DUF790	PF05626.6	gi|292655746|ref|YP_003535643.1|	-	3.6e-92	308.8	0.0	4.2e-92	308.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Levi_coat	PF01819.12	gi|292655746|ref|YP_003535643.1|	-	0.11	12.1	0.1	2.4	7.7	0.0	2.5	2	0	0	2	2	2	0	Levivirus	coat	protein
DUF1034	PF06280.7	gi|292655747|ref|YP_003535644.1|	-	0.027	14.8	0.0	0.033	14.6	0.0	1.2	1	0	0	1	1	1	0	Fn3-like	domain	(DUF1034)
Cytomega_UL20A	PF05984.7	gi|292655747|ref|YP_003535644.1|	-	0.064	13.4	1.4	0.16	12.1	0.1	1.9	2	0	0	2	2	2	0	Cytomegalovirus	UL20A	protein
ResIII	PF04851.10	gi|292655748|ref|YP_003535645.1|	-	3.1e-21	76.0	0.0	5.7e-19	68.6	0.0	3.3	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|292655748|ref|YP_003535645.1|	-	6.4e-17	61.1	0.1	1.4e-16	60.0	0.1	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|292655748|ref|YP_003535645.1|	-	6.8e-10	38.6	0.0	3.5e-09	36.3	0.0	2.1	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.1	gi|292655748|ref|YP_003535645.1|	-	0.0097	15.8	0.0	0.3	11.0	0.0	2.5	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DUF348	PF03990.9	gi|292655748|ref|YP_003535645.1|	-	0.092	12.3	0.9	0.25	10.9	0.7	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF348)
NMO	PF03060.10	gi|292655750|ref|YP_003535647.1|	-	0.012	14.7	0.0	0.012	14.7	0.0	1.1	1	0	0	1	1	1	0	Nitronate	monooxygenase
DUF282	PF03380.9	gi|292655750|ref|YP_003535647.1|	-	0.11	12.2	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Caenorhabditis	protein	of	unknown	function,	DUF282
TAT_signal	PF10518.4	gi|292655750|ref|YP_003535647.1|	-	0.35	10.9	2.6	0.65	10.1	1.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|292655751|ref|YP_003535648.1|	-	3.3e-32	111.6	0.0	4.7e-32	111.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655751|ref|YP_003535648.1|	-	4e-06	26.9	0.0	0.0014	18.6	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292655751|ref|YP_003535648.1|	-	7e-06	26.1	0.0	1.1e-05	25.4	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|292655751|ref|YP_003535648.1|	-	0.00023	20.3	0.0	0.00037	19.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
IstB_IS21	PF01695.12	gi|292655751|ref|YP_003535648.1|	-	0.00077	18.9	0.0	0.0013	18.1	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA	PF00004.24	gi|292655751|ref|YP_003535648.1|	-	0.0013	18.8	0.0	0.0034	17.5	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|292655751|ref|YP_003535648.1|	-	0.0015	19.3	0.1	0.006	17.3	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|292655751|ref|YP_003535648.1|	-	0.0018	18.6	0.0	0.0027	18.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292655751|ref|YP_003535648.1|	-	0.0024	17.3	0.3	0.03	13.7	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.1	gi|292655751|ref|YP_003535648.1|	-	0.0031	17.6	0.0	0.0063	16.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292655751|ref|YP_003535648.1|	-	0.0047	16.1	0.0	1.2	8.2	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Arch_ATPase	PF01637.13	gi|292655751|ref|YP_003535648.1|	-	0.0066	16.1	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_28	PF13521.1	gi|292655751|ref|YP_003535648.1|	-	0.0093	15.9	0.2	0.036	14.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.17	gi|292655751|ref|YP_003535648.1|	-	0.01	14.7	0.0	0.019	13.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ATP-synt_ab	PF00006.20	gi|292655751|ref|YP_003535648.1|	-	0.012	15.1	0.0	0.012	15.1	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NACHT	PF05729.7	gi|292655751|ref|YP_003535648.1|	-	0.015	14.9	0.0	0.031	13.9	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_18	PF13238.1	gi|292655751|ref|YP_003535648.1|	-	0.016	15.4	0.5	0.048	13.9	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|292655751|ref|YP_003535648.1|	-	0.02	14.6	1.0	0.11	12.3	0.1	2.6	2	1	1	3	3	3	0	Part	of	AAA	domain
AAA_29	PF13555.1	gi|292655751|ref|YP_003535648.1|	-	0.02	14.3	0.0	0.045	13.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.9	gi|292655751|ref|YP_003535648.1|	-	0.021	14.5	0.0	0.051	13.2	0.0	1.6	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|292655751|ref|YP_003535648.1|	-	0.025	14.3	0.1	0.054	13.1	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|292655751|ref|YP_003535648.1|	-	0.027	13.6	0.0	0.99	8.5	0.0	2.4	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.1	gi|292655751|ref|YP_003535648.1|	-	0.032	14.0	0.2	0.09	12.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.4	gi|292655751|ref|YP_003535648.1|	-	0.036	12.6	0.1	0.58	8.6	0.0	2.2	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_14	PF13173.1	gi|292655751|ref|YP_003535648.1|	-	0.043	13.7	0.0	0.13	12.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|292655751|ref|YP_003535648.1|	-	0.062	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.1	gi|292655751|ref|YP_003535648.1|	-	0.074	12.6	0.1	0.27	10.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|292655751|ref|YP_003535648.1|	-	0.074	12.6	0.3	0.45	10.0	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.7	gi|292655751|ref|YP_003535648.1|	-	0.1	11.6	0.0	0.33	9.9	0.0	1.7	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Rad17	PF03215.10	gi|292655751|ref|YP_003535648.1|	-	0.13	10.9	0.0	0.17	10.5	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
RNA_helicase	PF00910.17	gi|292655751|ref|YP_003535648.1|	-	0.14	12.3	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
UPF0079	PF02367.12	gi|292655751|ref|YP_003535648.1|	-	0.15	11.6	0.0	0.29	10.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
BPD_transp_1	PF00528.17	gi|292655752|ref|YP_003535649.1|	-	1.3e-21	76.9	8.9	1.3e-21	76.9	6.2	1.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
Ldh_2	PF02615.9	gi|292655752|ref|YP_003535649.1|	-	0.038	12.7	0.0	0.053	12.2	0.0	1.1	1	0	0	1	1	1	0	Malate/L-lactate	dehydrogenase
NMT1_2	PF13379.1	gi|292655753|ref|YP_003535650.1|	-	3e-31	108.6	0.2	4e-31	108.3	0.1	1.1	1	0	0	1	1	1	1	NMT1-like	family
Phosphonate-bd	PF12974.2	gi|292655753|ref|YP_003535650.1|	-	6.2e-05	22.4	0.0	8.8e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|292655753|ref|YP_003535650.1|	-	0.00041	20.0	0.0	0.0012	18.5	0.0	1.7	1	1	0	1	1	1	1	NMT1/THI5	like
TAT_signal	PF10518.4	gi|292655753|ref|YP_003535650.1|	-	0.0059	16.5	3.7	0.0059	16.5	2.6	2.5	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Phage_holin_5	PF06946.6	gi|292655753|ref|YP_003535650.1|	-	0.11	12.6	0.3	0.26	11.4	0.2	1.6	1	0	0	1	1	1	0	Phage	holin
Aminotran_1_2	PF00155.16	gi|292655754|ref|YP_003535651.1|	-	8e-68	229.0	0.0	9e-68	228.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|292655754|ref|YP_003535651.1|	-	4.8e-15	55.4	0.2	7.5e-15	54.8	0.1	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|292655754|ref|YP_003535651.1|	-	1.7e-09	37.2	0.0	3.6e-09	36.1	0.0	1.5	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|292655754|ref|YP_003535651.1|	-	6.9e-09	34.4	0.0	9.6e-09	33.9	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|292655754|ref|YP_003535651.1|	-	8.7e-08	31.2	0.0	1.2e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Na_H_antiporter	PF03553.9	gi|292655755|ref|YP_003535652.1|	-	3.3e-68	229.9	24.0	5.9e-65	219.2	4.2	2.2	1	1	1	2	2	2	2	Na+/H+	antiporter	family
DUF202	PF02656.10	gi|292655756|ref|YP_003535653.1|	-	6.2	7.1	11.2	0.21	11.8	2.5	2.2	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
PRC	PF05239.11	gi|292655757|ref|YP_003535654.1|	-	0.086	12.7	0.7	0.75	9.7	0.5	1.9	1	1	0	1	1	1	0	PRC-barrel	domain
MMR_HSR1_C	PF08438.5	gi|292655758|ref|YP_003535655.1|	-	1.2e-30	105.9	0.0	2.1e-30	105.1	0.0	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|292655758|ref|YP_003535655.1|	-	1.1e-15	57.6	0.0	6.5e-15	55.1	0.0	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|292655758|ref|YP_003535655.1|	-	8.8e-14	51.0	0.0	1.8e-13	50.0	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|292655758|ref|YP_003535655.1|	-	5.1e-08	32.3	0.0	1.5e-06	27.5	0.0	2.6	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|292655758|ref|YP_003535655.1|	-	0.12	11.7	0.0	1.7	8.0	0.0	2.6	3	0	0	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
DUF4349	PF14257.1	gi|292655759|ref|YP_003535656.1|	-	7.7e-72	241.6	6.5	9e-72	241.4	4.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4349)
CENP-F_leu_zip	PF10473.4	gi|292655759|ref|YP_003535656.1|	-	0.0021	17.9	4.2	0.0033	17.2	2.9	1.2	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Prefoldin_2	PF01920.15	gi|292655759|ref|YP_003535656.1|	-	0.021	14.5	4.6	0.71	9.6	1.1	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
DUF4140	PF13600.1	gi|292655759|ref|YP_003535656.1|	-	0.065	13.6	7.9	1.1	9.7	3.8	2.5	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DivIC	PF04977.10	gi|292655759|ref|YP_003535656.1|	-	0.071	12.6	9.4	0.25	10.8	1.2	3.0	2	1	1	3	3	3	0	Septum	formation	initiator
DUF2408	PF10303.4	gi|292655759|ref|YP_003535656.1|	-	0.076	13.1	0.5	0.54	10.3	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
DUF4201	PF13870.1	gi|292655759|ref|YP_003535656.1|	-	0.078	12.4	2.1	0.13	11.6	1.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
APG6	PF04111.7	gi|292655759|ref|YP_003535656.1|	-	0.084	11.9	2.8	0.053	12.5	0.9	1.3	2	0	0	2	2	1	0	Autophagy	protein	Apg6
Laminin_II	PF06009.7	gi|292655759|ref|YP_003535656.1|	-	0.13	12.0	5.5	0.17	11.6	2.9	1.9	2	1	0	2	2	1	0	Laminin	Domain	II
NPV_P10	PF05531.7	gi|292655759|ref|YP_003535656.1|	-	0.13	12.5	4.6	1.5	9.1	0.7	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
V_ATPase_I	PF01496.14	gi|292655759|ref|YP_003535656.1|	-	0.13	10.0	0.6	0.21	9.4	0.4	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF1664	PF07889.7	gi|292655759|ref|YP_003535656.1|	-	0.16	11.7	1.9	0.34	10.7	1.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.6	gi|292655759|ref|YP_003535656.1|	-	0.17	10.5	2.1	0.28	9.8	1.5	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Cauli_AT	PF03233.8	gi|292655759|ref|YP_003535656.1|	-	0.17	11.5	0.3	0.31	10.7	0.2	1.4	1	0	0	1	1	1	0	Aphid	transmission	protein
EMP24_GP25L	PF01105.19	gi|292655759|ref|YP_003535656.1|	-	0.21	11.2	7.4	0.086	12.5	0.6	2.6	2	1	1	3	3	3	0	emp24/gp25L/p24	family/GOLD
IFT20	PF14931.1	gi|292655759|ref|YP_003535656.1|	-	0.23	11.3	8.0	1.3	8.9	0.2	2.4	2	1	1	3	3	2	0	Intraflagellar	transport	complex	B,	subunit	20
DASH_Dam1	PF08653.5	gi|292655759|ref|YP_003535656.1|	-	0.3	10.8	0.9	2.5	7.9	0.0	2.8	2	1	1	3	3	3	0	DASH	complex	subunit	Dam1
COG2	PF06148.6	gi|292655759|ref|YP_003535656.1|	-	0.35	10.7	4.4	0.25	11.2	1.9	1.6	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Baculo_PEP_C	PF04513.7	gi|292655759|ref|YP_003535656.1|	-	0.35	10.6	2.5	0.85	9.4	1.6	1.7	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Spc24	PF08286.6	gi|292655759|ref|YP_003535656.1|	-	0.36	10.5	4.9	6.7	6.4	0.5	2.3	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF4200	PF13863.1	gi|292655759|ref|YP_003535656.1|	-	0.6	10.0	4.7	2.6	7.9	3.2	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
HR1	PF02185.11	gi|292655759|ref|YP_003535656.1|	-	0.71	9.6	4.2	2.1	8.1	0.8	2.2	1	1	1	2	2	2	0	Hr1	repeat
Viral_P18	PF04521.8	gi|292655759|ref|YP_003535656.1|	-	0.82	9.1	3.4	2.8	7.3	0.2	2.1	1	1	1	2	2	2	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
MerR-DNA-bind	PF09278.6	gi|292655759|ref|YP_003535656.1|	-	1.6	9.2	9.4	2.2	8.7	1.3	2.4	1	1	1	2	2	2	0	MerR,	DNA	binding
Osmo_CC	PF08946.5	gi|292655759|ref|YP_003535656.1|	-	1.9	8.5	5.8	7.5	6.6	0.9	2.3	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
SlyX	PF04102.7	gi|292655759|ref|YP_003535656.1|	-	2.2	8.6	5.5	5.3	7.4	1.3	2.4	1	1	1	2	2	2	0	SlyX
Tropomyosin_1	PF12718.2	gi|292655759|ref|YP_003535656.1|	-	4.6	7.0	9.5	5.8	6.7	5.5	1.7	2	0	0	2	2	2	0	Tropomyosin	like
Bactofilin	PF04519.8	gi|292655760|ref|YP_003535657.1|	-	5.9e-12	45.4	5.7	1.5e-09	37.7	0.3	3.4	2	2	1	3	3	3	3	Polymer-forming	cytoskeletal
Hexapep	PF00132.19	gi|292655760|ref|YP_003535657.1|	-	0.011	15.2	14.8	1.4	8.5	0.1	6.3	6	1	1	7	7	7	0	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|292655760|ref|YP_003535657.1|	-	3.7	7.1	8.5	9.5	5.8	0.1	4.0	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
DUF3179	PF11376.3	gi|292655762|ref|YP_003535659.1|	-	0.0017	17.5	5.0	0.05	12.7	1.3	2.7	1	1	1	3	3	3	2	Protein	of	unknown	function	(DUF3179)
TAT_signal	PF10518.4	gi|292655762|ref|YP_003535659.1|	-	0.31	11.1	0.2	0.31	11.1	0.1	2.3	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glycos_transf_2	PF00535.21	gi|292655763|ref|YP_003535660.1|	-	7.5e-20	71.2	0.0	9.3e-20	70.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292655763|ref|YP_003535660.1|	-	6.4e-09	35.9	0.1	8e-09	35.6	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF4193	PF13834.1	gi|292655764|ref|YP_003535661.1|	-	0.16	12.1	2.4	0.55	10.4	1.6	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4193)
RNase_H_2	PF13482.1	gi|292655765|ref|YP_003535662.1|	-	2.1e-36	125.1	0.0	2.8e-36	124.8	0.0	1.1	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.15	gi|292655765|ref|YP_003535662.1|	-	0.00023	20.6	0.0	0.00036	20.0	0.0	1.4	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo1	PF03104.14	gi|292655765|ref|YP_003535662.1|	-	0.098	11.5	0.0	2.1	7.1	0.0	2.0	1	1	1	2	2	2	0	DNA	polymerase	family	B,	exonuclease	domain
DUF159	PF02586.9	gi|292655766|ref|YP_003535663.1|	-	3.7e-60	203.0	0.0	4.2e-60	202.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
RHH_1	PF01402.16	gi|292655769|ref|YP_003535666.1|	-	0.036	13.9	0.6	0.11	12.4	0.0	2.1	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Cytidylate_kin2	PF13189.1	gi|292655769|ref|YP_003535666.1|	-	0.057	13.3	0.0	0.15	11.9	0.0	1.7	1	1	0	1	1	1	0	Cytidylate	kinase-like	family
Phage_integrase	PF00589.17	gi|292655770|ref|YP_003535667.1|	-	2.1e-15	56.8	0.0	3.3e-15	56.1	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|292655770|ref|YP_003535667.1|	-	1.3e-08	35.0	0.0	2.6e-08	34.0	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|292655770|ref|YP_003535667.1|	-	1.4e-07	31.5	0.1	3.4e-07	30.3	0.1	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Ribonuc_L-PSP	PF01042.16	gi|292655771|ref|YP_003535668.1|	-	9e-19	67.4	0.0	9.7e-19	67.3	0.0	1.1	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
HTH_20	PF12840.2	gi|292655772|ref|YP_003535669.1|	-	3.1e-13	49.3	0.2	6.3e-13	48.3	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655772|ref|YP_003535669.1|	-	4.2e-07	29.5	0.2	7.5e-07	28.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|292655772|ref|YP_003535669.1|	-	2.5e-06	26.7	0.0	4.1e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|292655772|ref|YP_003535669.1|	-	0.0066	16.7	0.4	0.016	15.5	0.0	1.8	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|292655772|ref|YP_003535669.1|	-	0.017	14.7	0.0	0.04	13.5	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|292655772|ref|YP_003535669.1|	-	0.022	14.4	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Maff2	PF12750.2	gi|292655772|ref|YP_003535669.1|	-	0.032	13.7	2.2	0.052	13.0	0.1	2.1	2	0	0	2	2	2	0	Maff2	family
ACT_6	PF13740.1	gi|292655772|ref|YP_003535669.1|	-	0.091	12.4	0.1	7.2	6.4	0.0	2.5	2	0	0	2	2	2	0	ACT	domain
DUF1049	PF06305.6	gi|292655772|ref|YP_003535669.1|	-	1.5	8.3	5.6	0.83	9.1	1.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
META	PF03724.11	gi|292655773|ref|YP_003535670.1|	-	0.004	16.9	0.0	0.071	12.9	0.0	2.3	2	0	0	2	2	2	1	META	domain
AAA_13	PF13166.1	gi|292655775|ref|YP_003535672.1|	-	3.2e-09	35.8	2.6	6.9e-05	21.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
Laminin_I	PF06008.9	gi|292655775|ref|YP_003535672.1|	-	1.8e-07	30.7	10.6	0.0085	15.4	0.6	3.3	2	1	1	3	3	3	3	Laminin	Domain	I
Spc7	PF08317.6	gi|292655775|ref|YP_003535672.1|	-	1.1e-06	27.5	8.4	0.00019	20.2	3.6	2.6	1	1	2	3	3	3	2	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.7	gi|292655775|ref|YP_003535672.1|	-	2.3e-06	27.4	3.7	0.048	13.4	0.1	4.0	1	1	2	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Reo_sigmaC	PF04582.7	gi|292655775|ref|YP_003535672.1|	-	6.3e-06	25.5	8.9	0.0028	16.8	1.2	2.3	1	1	1	2	2	2	2	Reovirus	sigma	C	capsid	protein
Tropomyosin	PF00261.15	gi|292655775|ref|YP_003535672.1|	-	4.4e-05	22.6	6.6	4.4e-05	22.6	4.6	2.7	1	1	1	2	2	2	1	Tropomyosin
Laminin_II	PF06009.7	gi|292655775|ref|YP_003535672.1|	-	4.6e-05	23.1	6.3	0.036	13.8	1.2	4.0	2	1	2	4	4	4	1	Laminin	Domain	II
IncA	PF04156.9	gi|292655775|ref|YP_003535672.1|	-	5e-05	22.9	16.4	0.1	12.1	3.5	3.5	1	1	2	3	3	3	2	IncA	protein
COG2	PF06148.6	gi|292655775|ref|YP_003535672.1|	-	5.1e-05	23.1	9.6	0.3	10.9	1.3	4.4	1	1	2	3	3	3	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
TPR_MLP1_2	PF07926.7	gi|292655775|ref|YP_003535672.1|	-	0.00017	21.3	5.8	0.019	14.7	1.3	4.1	1	1	2	3	3	3	1	TPR/MLP1/MLP2-like	protein
DUF4200	PF13863.1	gi|292655775|ref|YP_003535672.1|	-	0.00033	20.6	8.7	0.026	14.4	0.8	4.1	3	1	2	5	5	4	1	Domain	of	unknown	function	(DUF4200)
DUF3584	PF12128.3	gi|292655775|ref|YP_003535672.1|	-	0.00071	17.0	15.7	0.0012	16.2	10.9	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
NPV_P10	PF05531.7	gi|292655775|ref|YP_003535672.1|	-	0.00089	19.4	16.2	1.2	9.4	1.3	5.9	1	1	4	6	6	6	1	Nucleopolyhedrovirus	P10	protein
EzrA	PF06160.7	gi|292655775|ref|YP_003535672.1|	-	0.0013	17.0	5.5	0.0029	15.8	2.1	2.3	1	1	1	2	2	2	1	Septation	ring	formation	regulator,	EzrA
Cast	PF10174.4	gi|292655775|ref|YP_003535672.1|	-	0.0017	16.4	22.4	0.0034	15.5	15.5	1.5	1	1	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
RmuC	PF02646.11	gi|292655775|ref|YP_003535672.1|	-	0.0018	17.2	0.5	2.9	6.6	0.0	3.5	1	1	0	3	3	3	0	RmuC	family
DUF1664	PF07889.7	gi|292655775|ref|YP_003535672.1|	-	0.0032	17.2	13.0	0.59	9.9	0.5	4.3	1	1	3	4	4	4	1	Protein	of	unknown	function	(DUF1664)
MscS_porin	PF12795.2	gi|292655775|ref|YP_003535672.1|	-	0.0048	16.2	3.8	0.96	8.7	0.0	3.1	1	1	3	4	4	4	1	Mechanosensitive	ion	channel	porin	domain
WEMBL	PF05701.6	gi|292655775|ref|YP_003535672.1|	-	0.0049	15.4	16.7	0.089	11.2	1.0	2.3	1	1	1	2	2	2	2	Weak	chloroplast	movement	under	blue	light
Seryl_tRNA_N	PF02403.17	gi|292655775|ref|YP_003535672.1|	-	0.0052	16.7	7.9	4.6	7.3	0.8	4.8	2	2	3	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
Mnd1	PF03962.10	gi|292655775|ref|YP_003535672.1|	-	0.016	14.9	7.8	0.12	12.0	1.8	3.1	1	1	1	3	3	3	0	Mnd1	family
DUF16	PF01519.11	gi|292655775|ref|YP_003535672.1|	-	0.022	14.9	1.8	1.3	9.2	0.1	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF16
Atg14	PF10186.4	gi|292655775|ref|YP_003535672.1|	-	0.024	13.6	1.0	5.1	5.9	0.9	2.3	1	1	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Fib_alpha	PF08702.5	gi|292655775|ref|YP_003535672.1|	-	0.024	14.7	0.8	0.47	10.5	0.0	2.9	2	1	2	4	4	3	0	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.4	gi|292655775|ref|YP_003535672.1|	-	0.026	14.6	10.7	7.4	6.7	0.0	4.5	3	1	2	5	5	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
WXG100	PF06013.7	gi|292655775|ref|YP_003535672.1|	-	0.028	14.4	8.2	5.5	7.0	0.5	5.0	2	1	1	4	4	3	0	Proteins	of	100	residues	with	WXG
DUF1515	PF07439.6	gi|292655775|ref|YP_003535672.1|	-	0.035	13.9	0.7	0.035	13.9	0.5	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1515)
DUF3450	PF11932.3	gi|292655775|ref|YP_003535672.1|	-	0.037	13.2	6.9	8.8	5.5	0.0	3.9	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3450)
CCDC144C	PF14915.1	gi|292655775|ref|YP_003535672.1|	-	0.039	12.8	2.7	0.19	10.5	0.1	2.4	1	1	1	2	2	2	0	CCDC144C	protein	coiled-coil	region
DASH_Dam1	PF08653.5	gi|292655775|ref|YP_003535672.1|	-	0.041	13.6	2.5	4.4	7.1	0.0	4.8	6	1	0	6	6	5	0	DASH	complex	subunit	Dam1
TMF_DNA_bd	PF12329.3	gi|292655775|ref|YP_003535672.1|	-	0.053	13.3	6.8	14	5.5	0.2	4.9	1	1	6	7	7	7	0	TATA	element	modulatory	factor	1	DNA	binding
TSC22	PF01166.13	gi|292655775|ref|YP_003535672.1|	-	0.056	13.4	3.2	0.27	11.2	0.5	2.7	2	0	0	2	2	2	0	TSC-22/dip/bun	family
Prefoldin	PF02996.12	gi|292655775|ref|YP_003535672.1|	-	0.06	13.0	10.4	5.3	6.7	0.6	5.3	2	2	3	6	6	6	0	Prefoldin	subunit
APG6	PF04111.7	gi|292655775|ref|YP_003535672.1|	-	0.065	12.2	10.0	3.4	6.6	5.2	2.8	1	1	1	2	2	2	0	Autophagy	protein	Apg6
DUF2408	PF10303.4	gi|292655775|ref|YP_003535672.1|	-	0.075	13.1	4.0	13	5.9	0.5	3.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2408)
DUF2730	PF10805.3	gi|292655775|ref|YP_003535672.1|	-	0.14	11.8	5.6	0.82	9.4	0.2	4.1	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF2730)
Streptin-Immun	PF11083.3	gi|292655775|ref|YP_003535672.1|	-	0.15	12.0	0.9	3.7	7.6	0.1	3.1	2	1	1	3	3	3	0	Lantibiotic	streptin	immunity	protein
Nup54	PF13874.1	gi|292655775|ref|YP_003535672.1|	-	0.16	11.6	4.0	1.4	8.6	0.5	3.2	2	1	2	4	4	3	0	Nucleoporin	complex	subunit	54
DUF4201	PF13870.1	gi|292655775|ref|YP_003535672.1|	-	0.16	11.3	0.9	1.8	7.9	0.1	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
Med2	PF11214.3	gi|292655775|ref|YP_003535672.1|	-	0.17	11.9	5.4	3.2	7.8	1.0	3.2	1	1	0	2	2	2	0	Mediator	complex	subunit	2
Tropomyosin_1	PF12718.2	gi|292655775|ref|YP_003535672.1|	-	0.22	11.3	22.3	0.91	9.3	0.7	3.6	1	1	2	3	3	3	0	Tropomyosin	like
APG17	PF04108.7	gi|292655775|ref|YP_003535672.1|	-	0.3	9.8	9.0	5.1	5.7	3.6	3.2	1	1	1	2	2	2	0	Autophagy	protein	Apg17
Fzo_mitofusin	PF04799.8	gi|292655775|ref|YP_003535672.1|	-	0.32	10.3	2.0	27	4.0	0.1	3.1	3	0	0	3	3	3	0	fzo-like	conserved	region
CENP-F_leu_zip	PF10473.4	gi|292655775|ref|YP_003535672.1|	-	0.33	10.8	11.0	4.5	7.1	4.7	3.6	1	1	2	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Syntaxin-6_N	PF09177.6	gi|292655775|ref|YP_003535672.1|	-	0.41	11.0	11.8	0.37	11.2	0.2	4.3	1	1	3	4	4	4	0	Syntaxin	6,	N-terminal
DUF869	PF05911.6	gi|292655775|ref|YP_003535672.1|	-	0.41	8.8	12.6	0.67	8.1	1.2	2.9	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
Flagellin_C	PF00700.16	gi|292655775|ref|YP_003535672.1|	-	0.99	9.6	5.9	43	4.3	0.4	4.2	3	1	1	5	5	3	0	Bacterial	flagellin	C-terminal	helical	region
TBPIP	PF07106.8	gi|292655775|ref|YP_003535672.1|	-	1.2	8.7	3.7	7.8	6.0	0.4	3.2	1	1	1	3	3	3	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF812	PF05667.6	gi|292655775|ref|YP_003535672.1|	-	2.1	6.7	13.8	5.8	5.3	1.5	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
Flagellin_N	PF00669.15	gi|292655775|ref|YP_003535672.1|	-	2.3	7.9	10.1	5.3	6.8	0.4	3.8	2	2	1	3	3	3	0	Bacterial	flagellin	N-terminal	helical	region
Rootletin	PF15035.1	gi|292655775|ref|YP_003535672.1|	-	2.5	8.0	10.8	13	5.6	0.1	3.0	1	1	2	3	3	3	0	Ciliary	rootlet	component,	centrosome	cohesion
DASH_Spc34	PF08657.5	gi|292655775|ref|YP_003535672.1|	-	3.2	7.3	10.8	0.6	9.7	2.2	2.7	2	1	0	2	2	2	0	DASH	complex	subunit	Spc34
IFT57	PF10498.4	gi|292655775|ref|YP_003535672.1|	-	3.5	6.2	14.7	0.17	10.5	0.5	2.7	2	1	1	3	3	2	0	Intra-flagellar	transport	protein	57
MtrB	PF05440.7	gi|292655775|ref|YP_003535672.1|	-	4.1	7.5	5.8	32	4.6	0.0	4.4	2	2	3	5	5	4	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
CorA	PF01544.13	gi|292655775|ref|YP_003535672.1|	-	4.3	6.2	21.7	0.94	8.4	1.1	2.8	2	1	1	3	3	2	0	CorA-like	Mg2+	transporter	protein
MtrG	PF04210.8	gi|292655775|ref|YP_003535672.1|	-	4.4	7.0	13.2	15	5.3	0.2	5.1	3	2	1	5	5	5	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Syntaxin	PF00804.20	gi|292655775|ref|YP_003535672.1|	-	5.2	7.2	8.9	73	3.6	0.5	3.7	2	1	1	3	3	3	0	Syntaxin
DUF2077	PF09850.4	gi|292655775|ref|YP_003535672.1|	-	5.7	6.2	9.0	0.56	9.5	0.2	3.1	3	1	1	4	4	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
V_ATPase_I	PF01496.14	gi|292655775|ref|YP_003535672.1|	-	6.1	4.5	4.2	10	3.8	1.9	1.8	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
AATF-Che1	PF13339.1	gi|292655775|ref|YP_003535672.1|	-	7.1	6.8	5.9	41	4.3	1.3	3.2	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
FlgN	PF05130.7	gi|292655775|ref|YP_003535672.1|	-	7.4	6.8	12.1	9	6.5	5.3	2.9	2	1	1	3	3	3	0	FlgN	protein
ATP-synt_B	PF00430.13	gi|292655775|ref|YP_003535672.1|	-	8.2	6.2	12.3	12	5.6	2.9	3.5	3	2	0	3	3	2	0	ATP	synthase	B/B'	CF(0)
Lactamase_B_2	PF12706.2	gi|292655776|ref|YP_003535673.1|	-	6.8e-16	58.3	0.7	8.8e-16	58.0	0.5	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292655776|ref|YP_003535673.1|	-	1.8e-12	47.2	0.1	2.5e-12	46.7	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|292655776|ref|YP_003535673.1|	-	6e-05	22.7	10.0	0.0018	17.9	0.3	2.6	2	1	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lysine_decarbox	PF03641.9	gi|292655778|ref|YP_003535675.1|	-	7.8e-08	32.2	0.1	1.3e-07	31.5	0.1	1.3	1	0	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.10	gi|292655778|ref|YP_003535675.1|	-	2.5e-07	29.8	1.9	3.2e-06	26.1	0.4	2.0	2	0	0	2	2	2	2	DNA	recombination-mediator	protein	A
AA_kinase	PF00696.23	gi|292655778|ref|YP_003535675.1|	-	0.087	12.3	0.3	0.14	11.6	0.2	1.4	1	1	0	1	1	1	0	Amino	acid	kinase	family
Hydrolase_like	PF13242.1	gi|292655778|ref|YP_003535675.1|	-	0.096	12.4	0.1	0.24	11.1	0.1	1.7	1	0	0	1	1	1	0	HAD-hyrolase-like
TctB	PF07331.6	gi|292655780|ref|YP_003535677.1|	-	0.62	9.7	17.7	0.91	9.1	12.3	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
MotA_ExbB	PF01618.11	gi|292655780|ref|YP_003535677.1|	-	1.5	8.4	4.0	2.6	7.6	2.8	1.4	1	0	0	1	1	1	0	MotA/TolQ/ExbB	proton	channel	family
Diphthamide_syn	PF01866.12	gi|292655781|ref|YP_003535678.1|	-	6e-94	314.7	0.0	7e-94	314.5	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
DUF3529	PF12046.3	gi|292655781|ref|YP_003535678.1|	-	0.033	13.2	0.0	0.054	12.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3529)
Hydrolase_4	PF12146.3	gi|292655781|ref|YP_003535678.1|	-	0.1	12.4	0.0	12	5.8	0.0	2.4	2	0	0	2	2	2	0	Putative	lysophospholipase
Abhydrolase_2	PF02230.11	gi|292655782|ref|YP_003535679.1|	-	8.9e-24	84.1	0.0	1e-23	83.9	0.0	1.0	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_5	PF12695.2	gi|292655782|ref|YP_003535679.1|	-	1.8e-14	53.7	0.2	2.3e-14	53.3	0.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|292655782|ref|YP_003535679.1|	-	7.7e-09	35.7	4.3	2.5e-06	27.5	1.7	2.8	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|292655782|ref|YP_003535679.1|	-	1.7e-07	30.7	0.0	2.8e-07	30.0	0.0	1.3	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.16	gi|292655782|ref|YP_003535679.1|	-	7.9e-06	25.2	0.0	0.0025	17.0	0.0	2.5	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
Esterase	PF00756.15	gi|292655782|ref|YP_003535679.1|	-	5.3e-05	22.7	0.0	7.2e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Putative	esterase
LIP	PF03583.9	gi|292655782|ref|YP_003535679.1|	-	0.0024	17.1	0.0	0.066	12.4	0.0	2.1	2	0	0	2	2	2	1	Secretory	lipase
FSH1	PF03959.8	gi|292655782|ref|YP_003535679.1|	-	0.013	14.9	0.0	0.026	13.9	0.0	1.7	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
Peptidase_S15	PF02129.13	gi|292655782|ref|YP_003535679.1|	-	0.033	13.5	0.0	0.039	13.3	0.0	1.2	1	0	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.3	gi|292655782|ref|YP_003535679.1|	-	0.05	13.4	0.1	4.2	7.3	0.0	3.2	3	1	1	4	4	4	0	Putative	lysophospholipase
Esterase_phd	PF10503.4	gi|292655782|ref|YP_003535679.1|	-	0.083	12.1	0.3	0.33	10.1	0.2	2.0	1	1	0	1	1	1	0	Esterase	PHB	depolymerase
Abhydrolase_3	PF07859.8	gi|292655782|ref|YP_003535679.1|	-	0.089	12.3	0.1	2.2	7.8	0.0	2.2	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Tautomerase	PF01361.16	gi|292655782|ref|YP_003535679.1|	-	0.11	12.0	0.0	4.4	6.9	0.0	2.6	2	0	0	2	2	2	0	Tautomerase	enzyme
DUF964	PF06133.6	gi|292655783|ref|YP_003535680.1|	-	6.2e-21	74.4	4.2	6.8e-21	74.3	2.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF964)
Seryl_tRNA_N	PF02403.17	gi|292655783|ref|YP_003535680.1|	-	0.005	16.8	2.9	0.0082	16.1	2.0	1.5	1	1	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
SH3BP5	PF05276.9	gi|292655783|ref|YP_003535680.1|	-	0.042	13.1	2.8	0.075	12.3	1.9	1.4	1	1	0	1	1	1	0	SH3	domain-binding	protein	5	(SH3BP5)
BMFP	PF04380.8	gi|292655783|ref|YP_003535680.1|	-	0.049	13.7	1.9	0.15	12.2	1.3	1.8	1	1	0	1	1	1	0	Membrane	fusogenic	activity
COG2	PF06148.6	gi|292655783|ref|YP_003535680.1|	-	0.059	13.2	1.6	0.09	12.6	1.1	1.3	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RGCC	PF15151.1	gi|292655783|ref|YP_003535680.1|	-	0.13	12.7	1.2	0.29	11.5	0.6	1.9	1	1	1	2	2	2	0	Response	gene	to	complement	32	protein	family
LUC7	PF03194.10	gi|292655783|ref|YP_003535680.1|	-	0.37	10.2	2.7	0.44	10.0	1.9	1.1	1	0	0	1	1	1	0	LUC7	N_terminus
DUF3073	PF11273.3	gi|292655783|ref|YP_003535680.1|	-	0.44	11.1	2.8	2.4	8.7	1.8	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3073)
TBPIP	PF07106.8	gi|292655783|ref|YP_003535680.1|	-	0.52	9.8	2.9	1.2	8.6	1.9	1.6	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
CENP-F_leu_zip	PF10473.4	gi|292655783|ref|YP_003535680.1|	-	1.2	8.9	6.9	1.9	8.3	4.8	1.3	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Uso1_p115_C	PF04871.8	gi|292655783|ref|YP_003535680.1|	-	6.5	6.6	10.1	17	5.3	0.3	2.2	1	1	1	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
CbiA	PF01656.18	gi|292655784|ref|YP_003535681.1|	-	1.8e-17	63.4	0.0	2.2e-17	63.1	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|292655784|ref|YP_003535681.1|	-	5.6e-06	26.0	0.6	0.047	13.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.6	gi|292655784|ref|YP_003535681.1|	-	0.00064	18.8	0.0	0.00081	18.5	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
ParA	PF10609.4	gi|292655784|ref|YP_003535681.1|	-	0.0056	16.5	0.1	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
DUF1065	PF06358.6	gi|292655784|ref|YP_003535681.1|	-	0.053	13.2	0.1	0.082	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1065)
Zeta_toxin	PF06414.7	gi|292655784|ref|YP_003535681.1|	-	0.053	12.6	0.1	0.07	12.2	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_31	PF13614.1	gi|292655784|ref|YP_003535681.1|	-	0.17	11.8	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
KaiC	PF06745.8	gi|292655785|ref|YP_003535682.1|	-	4.1e-07	29.3	0.0	0.0028	16.7	0.0	2.1	2	0	0	2	2	2	2	KaiC
PAXNEB	PF05625.6	gi|292655785|ref|YP_003535682.1|	-	0.033	13.0	0.0	0.064	12.0	0.0	1.5	2	0	0	2	2	2	0	PAXNEB	protein
EmrE	PF13536.1	gi|292655786|ref|YP_003535683.1|	-	0.11	12.6	4.0	0.15	12.2	2.7	1.2	1	0	0	1	1	1	0	Multidrug	resistance	efflux	transporter
VIT1	PF01988.14	gi|292655786|ref|YP_003535683.1|	-	2.5	7.5	5.4	0.69	9.3	1.7	1.5	1	1	0	1	1	1	0	VIT	family
FKBP_C	PF00254.23	gi|292655787|ref|YP_003535684.1|	-	6.8e-11	42.0	0.5	1.5e-10	40.9	0.1	1.8	2	0	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
DUF1967	PF09269.6	gi|292655787|ref|YP_003535684.1|	-	0.13	11.9	1.8	25	4.6	0.0	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF1967)
DctQ	PF04290.7	gi|292655788|ref|YP_003535685.1|	-	0.083	12.6	3.5	1	9.1	0.9	2.2	1	1	1	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF3054	PF11255.3	gi|292655789|ref|YP_003535686.1|	-	0.082	12.7	0.9	0.11	12.3	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3054)
MFS_1	PF07690.11	gi|292655790|ref|YP_003535687.1|	-	0.024	13.3	1.4	0.029	13.1	0.9	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF1469	PF07332.6	gi|292655790|ref|YP_003535687.1|	-	1.3	8.8	7.8	1.6	8.4	5.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Claudin_2	PF13903.1	gi|292655790|ref|YP_003535687.1|	-	3.8	7.1	7.9	4.7	6.8	5.5	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
7TMR-DISM_7TM	PF07695.6	gi|292655791|ref|YP_003535688.1|	-	0.014	15.1	2.5	0.016	14.8	1.8	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
DUF2244	PF10003.4	gi|292655791|ref|YP_003535688.1|	-	3.5	7.0	6.7	1.1	8.6	2.7	1.6	1	1	1	2	2	2	0	Integral	membrane	protein	(DUF2244)
NnrS	PF05940.7	gi|292655792|ref|YP_003535689.1|	-	0.036	12.9	1.6	0.04	12.8	1.1	1.2	1	0	0	1	1	1	0	NnrS	protein
DUF4137	PF13593.1	gi|292655792|ref|YP_003535689.1|	-	0.059	12.4	0.7	0.067	12.2	0.5	1.3	1	1	0	1	1	1	0	SBF-like	CPA	transporter	family	(DUF4137)
COX4_pro	PF03626.9	gi|292655793|ref|YP_003535690.1|	-	4.3e-11	42.7	10.8	4.9e-11	42.5	7.5	1.0	1	0	0	1	1	1	1	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
HlyIII	PF03006.15	gi|292655793|ref|YP_003535690.1|	-	1.3	8.3	7.9	1.7	8.0	5.5	1.0	1	0	0	1	1	1	0	Haemolysin-III	related
DUF983	PF06170.7	gi|292655793|ref|YP_003535690.1|	-	1.4	9.1	7.9	1.8	8.6	3.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF4131	PF13567.1	gi|292655793|ref|YP_003535690.1|	-	4.4	6.6	7.7	4.1	6.7	4.9	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF1469	PF07332.6	gi|292655793|ref|YP_003535690.1|	-	8.1	6.1	18.0	0.3	10.8	5.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
COX1	PF00115.15	gi|292655794|ref|YP_003535691.1|	-	3.9e-144	480.5	65.4	3.9e-144	480.5	45.3	2.5	2	1	0	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.13	gi|292655794|ref|YP_003535691.1|	-	1.7e-20	73.5	9.7	1.7e-20	73.5	6.7	3.5	3	0	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
DUF2583	PF10762.4	gi|292655794|ref|YP_003535691.1|	-	1.8	8.7	8.3	0.67	10.1	2.2	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
COX2	PF00116.15	gi|292655795|ref|YP_003535692.1|	-	2.4e-20	72.5	0.1	8.8e-20	70.7	0.0	1.9	1	1	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.1	gi|292655795|ref|YP_003535692.1|	-	7.2e-05	22.6	0.0	0.00012	21.9	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Oxidored_q1_N	PF00662.15	gi|292655795|ref|YP_003535692.1|	-	7.5	6.1	10.8	12	5.5	0.3	2.4	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
PDGLE	PF13190.1	gi|292655796|ref|YP_003535693.1|	-	0.53	10.0	0.0	0.53	10.0	0.0	2.2	2	0	0	2	2	2	0	PDGLE	domain
CYTH	PF01928.16	gi|292655797|ref|YP_003535694.1|	-	3.9e-42	144.0	1.2	4.4e-42	143.8	0.9	1.0	1	0	0	1	1	1	1	CYTH	domain
AdoMet_Synthase	PF01941.14	gi|292655798|ref|YP_003535695.1|	-	2.4e-178	592.6	5.6	2.7e-178	592.4	3.9	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
PP_kinase_C	PF13090.1	gi|292655799|ref|YP_003535696.1|	-	9.3e-154	511.2	0.0	1.2e-153	510.8	0.0	1.1	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain
PP_kinase	PF02503.12	gi|292655799|ref|YP_003535696.1|	-	8.1e-65	218.2	3.7	1.2e-64	217.6	2.5	1.3	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.1	gi|292655799|ref|YP_003535696.1|	-	8.4e-39	132.0	0.0	2.2e-38	130.6	0.0	1.8	1	0	0	1	1	1	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.1	gi|292655799|ref|YP_003535696.1|	-	3.6e-10	39.6	0.0	0.00014	21.5	0.0	2.4	2	0	0	2	2	2	2	PLD-like	domain
ThiI	PF02568.9	gi|292655800|ref|YP_003535697.1|	-	1.5e-46	158.3	0.0	2e-46	157.9	0.0	1.1	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.12	gi|292655800|ref|YP_003535697.1|	-	8.6e-17	61.3	0.0	1.9e-16	60.2	0.0	1.6	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.8	gi|292655800|ref|YP_003535697.1|	-	7.4e-05	22.1	0.0	0.018	14.3	0.0	2.7	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.11	gi|292655800|ref|YP_003535697.1|	-	0.088	11.3	0.0	0.13	10.7	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
DUF3263	PF11662.3	gi|292655801|ref|YP_003535698.1|	-	0.058	12.8	0.0	0.073	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3263)
Ldl_recept_b	PF00058.12	gi|292655801|ref|YP_003535698.1|	-	0.12	12.6	0.0	0.17	12.2	0.0	1.2	1	0	0	1	1	1	0	Low-density	lipoprotein	receptor	repeat	class	B
RRN7	PF11781.3	gi|292655801|ref|YP_003535698.1|	-	0.47	9.9	5.3	0.64	9.5	0.4	2.1	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
PALP	PF00291.20	gi|292655803|ref|YP_003535700.1|	-	9.4e-61	205.6	0.2	1.2e-60	205.2	0.2	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.21	gi|292655803|ref|YP_003535700.1|	-	0.089	12.3	0.1	0.21	11.1	0.1	1.8	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
Thioredoxin	PF00085.15	gi|292655804|ref|YP_003535701.1|	-	4.8e-05	22.9	0.0	9.8e-05	21.9	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_9	PF14595.1	gi|292655804|ref|YP_003535701.1|	-	0.024	14.1	0.1	0.075	12.6	0.0	1.8	1	1	0	1	1	1	0	Thioredoxin
Thioredoxin_2	PF13098.1	gi|292655804|ref|YP_003535701.1|	-	0.037	14.2	0.1	0.26	11.4	0.1	2.0	1	1	0	1	1	1	0	Thioredoxin-like	domain
Thioredox_DsbH	PF03190.10	gi|292655805|ref|YP_003535702.1|	-	6.6e-75	250.3	0.0	1e-74	249.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|292655805|ref|YP_003535702.1|	-	7.1e-13	48.3	0.0	1.8e-12	47.1	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|292655805|ref|YP_003535702.1|	-	0.0076	16.4	0.0	0.017	15.2	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like	domain
Glyco_hydro_76	PF03663.9	gi|292655805|ref|YP_003535702.1|	-	0.16	11.3	0.0	1.2	8.3	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	76
GARS_A	PF01071.14	gi|292655806|ref|YP_003535703.1|	-	6.8e-51	172.5	0.2	1.5e-50	171.5	0.0	1.6	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|292655806|ref|YP_003535703.1|	-	1.1e-23	83.5	0.3	2.1e-23	82.6	0.2	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.11	gi|292655806|ref|YP_003535703.1|	-	2.6e-21	75.5	0.7	7.3e-21	74.1	0.1	2.0	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|292655806|ref|YP_003535703.1|	-	3.4e-19	69.2	0.2	1e-18	67.7	0.0	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|292655806|ref|YP_003535703.1|	-	6.1e-07	28.4	0.0	3.9e-05	22.5	0.0	2.4	2	1	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|292655806|ref|YP_003535703.1|	-	6.4e-05	22.8	0.0	0.00017	21.4	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
TPR_16	PF13432.1	gi|292655806|ref|YP_003535703.1|	-	0.092	13.4	4.0	0.19	12.4	0.0	3.3	4	0	0	4	4	4	0	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|292655806|ref|YP_003535703.1|	-	0.15	12.4	0.5	2.3	8.6	0.0	2.8	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Hexapep	PF00132.19	gi|292655807|ref|YP_003535704.1|	-	1.1e-10	40.5	4.1	8.2e-09	34.5	0.1	2.5	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|292655807|ref|YP_003535704.1|	-	3.6e-10	39.2	2.0	8.3e-08	31.6	0.1	2.7	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.13	gi|292655808|ref|YP_003535705.1|	-	1.2e-14	54.0	1.2	1.2e-14	54.0	0.8	2.5	3	0	0	3	3	3	1	Mechanosensitive	ion	channel
TM_helix	PF05552.7	gi|292655808|ref|YP_003535705.1|	-	5.5e-07	29.1	20.9	2.7e-06	26.9	1.7	3.3	3	0	0	3	3	3	2	Conserved	TM	helix
DUF443	PF04276.7	gi|292655808|ref|YP_003535705.1|	-	0.52	9.7	6.5	0.93	8.8	4.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF443)
DisA_N	PF02457.11	gi|292655809|ref|YP_003535706.1|	-	5.8e-25	86.7	0.0	8.9e-25	86.1	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Bac_globin	PF01152.16	gi|292655810|ref|YP_003535707.1|	-	7.3e-27	93.7	0.0	7.8e-27	93.6	0.0	1.0	1	0	0	1	1	1	1	Bacterial-like	globin
Protoglobin	PF11563.3	gi|292655810|ref|YP_003535707.1|	-	0.00029	20.5	0.1	0.0033	17.0	0.0	2.0	2	0	0	2	2	2	1	Protoglobin
UbiA	PF01040.13	gi|292655811|ref|YP_003535708.1|	-	0.012	14.8	2.5	0.012	14.8	1.7	1.0	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
SdpI	PF13630.1	gi|292655811|ref|YP_003535708.1|	-	0.2	11.3	2.1	0.27	10.9	1.5	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
TFIIB	PF00382.14	gi|292655812|ref|YP_003535709.1|	-	3.6e-05	23.5	0.3	5e-05	23.0	0.2	1.4	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_28	PF13518.1	gi|292655812|ref|YP_003535709.1|	-	0.0024	17.8	0.0	0.0046	16.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|292655812|ref|YP_003535709.1|	-	0.013	14.8	0.3	0.045	13.0	0.2	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
TMEM107	PF14995.1	gi|292655813|ref|YP_003535710.1|	-	0.15	12.2	1.8	0.17	12.0	1.2	1.1	1	0	0	1	1	1	0	Transmembrane	protein
DUF4190	PF13828.1	gi|292655813|ref|YP_003535710.1|	-	0.91	9.1	7.1	2	8.0	4.9	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4190)
DUF3487	PF11990.3	gi|292655813|ref|YP_003535710.1|	-	1.2	8.5	5.0	1.4	8.3	3.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF2892	PF11127.3	gi|292655813|ref|YP_003535710.1|	-	3.8	7.4	8.9	5.9	6.8	6.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Fst_toxin	PF13955.1	gi|292655813|ref|YP_003535710.1|	-	4.2	7.1	7.8	1.6	8.4	2.8	2.2	2	1	0	2	2	2	0	Toxin	Fst,	type	I	toxin-antitoxin	system
CTP_transf_2	PF01467.21	gi|292655814|ref|YP_003535711.1|	-	3.3e-13	49.9	0.0	1.3e-11	44.7	0.0	2.0	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|292655814|ref|YP_003535711.1|	-	0.0023	17.5	0.4	0.053	13.1	0.2	2.2	2	0	0	2	2	2	1	FAD	synthetase
TrmB	PF01978.14	gi|292655815|ref|YP_003535712.1|	-	8.7e-08	31.7	0.1	1.2e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|292655815|ref|YP_003535712.1|	-	6.4e-05	22.2	0.0	8.8e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|292655815|ref|YP_003535712.1|	-	7.5e-05	22.4	0.6	0.00014	21.6	0.2	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|292655815|ref|YP_003535712.1|	-	0.00012	21.4	0.1	0.00029	20.2	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.12	gi|292655815|ref|YP_003535712.1|	-	0.00018	20.9	0.0	0.00023	20.5	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_IclR	PF09339.5	gi|292655815|ref|YP_003535712.1|	-	0.011	15.3	0.1	0.017	14.6	0.1	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655815|ref|YP_003535712.1|	-	0.011	15.4	0.2	0.025	14.2	0.1	1.7	2	0	0	2	2	2	0	MarR	family
Rrf2	PF02082.15	gi|292655815|ref|YP_003535712.1|	-	0.026	14.6	0.0	0.042	13.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|292655815|ref|YP_003535712.1|	-	0.046	13.6	0.0	0.081	12.8	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GCS2	PF04107.8	gi|292655816|ref|YP_003535713.1|	-	2.6e-75	253.2	0.2	3e-75	252.9	0.1	1.0	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Amidoligase_2	PF12224.3	gi|292655816|ref|YP_003535713.1|	-	0.0011	18.7	0.3	1.2	8.6	0.0	2.5	3	0	0	3	3	3	2	Putative	amidoligase	enzyme
Fibrillarin	PF01269.12	gi|292655817|ref|YP_003535714.1|	-	2.4e-52	177.1	0.0	2.8e-52	176.8	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Nop	PF01798.13	gi|292655818|ref|YP_003535715.1|	-	8.8e-41	138.6	0.0	1.5e-40	137.9	0.0	1.3	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
Exosortase_EpsH	PF09721.5	gi|292655820|ref|YP_003535717.1|	-	0.019	14.1	0.4	0.023	13.9	0.2	1.0	1	0	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
FA_desaturase	PF00487.19	gi|292655820|ref|YP_003535717.1|	-	0.042	13.3	1.4	0.054	12.9	0.1	1.7	1	1	1	2	2	2	0	Fatty	acid	desaturase
DUF3188	PF11384.3	gi|292655822|ref|YP_003535719.1|	-	2.3	7.8	5.1	3.8	7.1	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
CorA	PF01544.13	gi|292655823|ref|YP_003535720.1|	-	1.2e-66	224.7	0.0	1.4e-66	224.5	0.0	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
DUF552	PF04472.7	gi|292655823|ref|YP_003535720.1|	-	0.1	12.5	0.0	0.29	11.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF552)
TFIIB	PF00382.14	gi|292655824|ref|YP_003535721.1|	-	2.2e-39	133.1	0.1	1.9e-18	66.0	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|292655824|ref|YP_003535721.1|	-	1.1e-16	59.8	3.3	2.1e-16	58.9	2.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|292655824|ref|YP_003535721.1|	-	0.0024	17.7	0.0	2.4	8.1	0.0	2.4	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.11	gi|292655824|ref|YP_003535721.1|	-	0.027	13.7	3.5	0.16	11.2	0.0	3.5	4	0	0	4	4	4	0	Sigma-70,	region	4
A2L_zn_ribbon	PF08792.5	gi|292655825|ref|YP_003535722.1|	-	0.0039	16.5	0.3	0.42	10.1	0.0	2.1	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
DZR	PF12773.2	gi|292655825|ref|YP_003535722.1|	-	0.005	16.6	2.3	0.009	15.8	1.6	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
NMD3	PF04981.8	gi|292655825|ref|YP_003535722.1|	-	0.0053	15.9	0.2	0.0054	15.8	0.1	1.1	1	0	0	1	1	1	1	NMD3	family
Zn-ribbon_8	PF09723.5	gi|292655825|ref|YP_003535722.1|	-	0.0062	16.4	1.1	1.9	8.4	0.1	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292655825|ref|YP_003535722.1|	-	0.0077	16.0	0.7	0.013	15.2	0.5	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|292655825|ref|YP_003535722.1|	-	0.0095	15.3	0.6	1.1	8.8	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|292655825|ref|YP_003535722.1|	-	0.011	14.9	1.5	2	7.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|292655825|ref|YP_003535722.1|	-	0.012	15.2	0.3	0.013	15.1	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Stc1	PF12898.2	gi|292655825|ref|YP_003535722.1|	-	0.026	14.5	0.6	0.032	14.2	0.4	1.2	1	0	0	1	1	1	0	Stc1	domain
TF_Zn_Ribbon	PF08271.7	gi|292655825|ref|YP_003535722.1|	-	0.027	13.7	2.9	0.077	12.3	1.8	1.8	1	1	1	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.1	gi|292655825|ref|YP_003535722.1|	-	0.03	14.0	1.0	0.055	13.1	0.7	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292655825|ref|YP_003535722.1|	-	0.031	13.8	1.0	0.072	12.6	0.7	1.6	1	1	1	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|292655825|ref|YP_003535722.1|	-	0.032	13.8	1.3	1.9	8.2	0.0	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
OrfB_Zn_ribbon	PF07282.6	gi|292655825|ref|YP_003535722.1|	-	0.033	13.8	0.9	0.047	13.3	0.6	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|292655825|ref|YP_003535722.1|	-	0.041	13.5	1.2	0.16	11.6	0.0	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|292655825|ref|YP_003535722.1|	-	0.047	13.4	1.6	0.13	12.0	0.1	2.0	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TFIIS_C	PF01096.13	gi|292655825|ref|YP_003535722.1|	-	0.072	12.7	1.0	3.9	7.1	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-CHY	PF05495.7	gi|292655825|ref|YP_003535722.1|	-	0.079	13.1	0.2	0.09	12.9	0.1	1.2	1	0	0	1	1	1	0	CHY	zinc	finger
Lar_restr_allev	PF14354.1	gi|292655825|ref|YP_003535722.1|	-	0.11	12.8	1.9	0.3	11.4	1.3	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF2752	PF10825.3	gi|292655825|ref|YP_003535722.1|	-	0.11	12.5	0.4	1.8	8.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2752)
DNA_RNApol_7kD	PF03604.8	gi|292655825|ref|YP_003535722.1|	-	0.12	11.9	0.9	11	5.5	0.1	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-TFIIB	PF13453.1	gi|292655825|ref|YP_003535722.1|	-	0.12	11.5	1.7	0.23	10.6	1.2	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zf-IS66	PF13005.2	gi|292655825|ref|YP_003535722.1|	-	0.13	12.2	1.0	10	6.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc-ribbons_6	PF07191.7	gi|292655825|ref|YP_003535722.1|	-	0.13	12.0	1.8	0.64	9.8	1.3	1.8	1	1	1	2	2	2	0	zinc-ribbons
zf-CSL	PF05207.8	gi|292655825|ref|YP_003535722.1|	-	0.17	11.4	0.7	0.29	10.6	0.3	1.5	1	1	1	2	2	2	0	CSL	zinc	finger
DUF1610	PF07754.6	gi|292655825|ref|YP_003535722.1|	-	0.2	11.8	4.6	1.2	9.3	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-Mss51	PF13824.1	gi|292655825|ref|YP_003535722.1|	-	0.22	11.3	3.0	0.94	9.3	2.5	1.8	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-nanos	PF05741.8	gi|292655825|ref|YP_003535722.1|	-	0.54	10.2	2.7	2.3	8.2	0.4	2.1	1	1	1	2	2	2	0	Nanos	RNA	binding	domain
Nudix_N_2	PF14803.1	gi|292655825|ref|YP_003535722.1|	-	0.57	9.9	3.9	2.4	7.9	2.6	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
Ribosomal_S27e	PF01667.12	gi|292655825|ref|YP_003535722.1|	-	0.67	9.5	2.5	4.6	6.8	1.7	2.0	1	1	0	1	1	1	0	Ribosomal	protein	S27
Tnp_zf-ribbon_2	PF13842.1	gi|292655825|ref|YP_003535722.1|	-	1	9.7	3.7	8.5	6.8	2.5	2.0	1	1	0	1	1	1	0	DDE_Tnp_1-like	zinc-ribbon
Rubredoxin	PF00301.15	gi|292655825|ref|YP_003535722.1|	-	1.2	9.1	4.0	4.8	7.1	0.1	2.2	1	1	1	2	2	2	0	Rubredoxin
Ogr_Delta	PF04606.7	gi|292655825|ref|YP_003535722.1|	-	3.2	7.4	5.4	54	3.5	3.7	2.2	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-HYPF	PF07503.7	gi|292655825|ref|YP_003535722.1|	-	3.6	7.0	6.0	9.7	5.7	4.2	1.7	1	1	0	1	1	1	0	HypF	finger
eIF-5_eIF-2B	PF01873.12	gi|292655826|ref|YP_003535723.1|	-	9.6e-32	109.2	0.0	1.1e-31	109.0	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
RecR	PF02132.10	gi|292655826|ref|YP_003535723.1|	-	0.0059	16.0	0.0	0.14	11.5	0.0	2.2	2	0	0	2	2	2	1	RecR	protein
Zn-ribbon_8	PF09723.5	gi|292655826|ref|YP_003535723.1|	-	0.023	14.6	0.8	0.044	13.7	0.5	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292655826|ref|YP_003535723.1|	-	0.025	14.2	0.2	0.042	13.4	0.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.1	gi|292655826|ref|YP_003535723.1|	-	0.28	10.9	3.2	6.8	6.5	2.6	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
Lar_restr_allev	PF14354.1	gi|292655826|ref|YP_003535723.1|	-	0.35	11.1	1.5	2.2	8.6	0.0	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|292655826|ref|YP_003535723.1|	-	0.66	9.2	2.8	16	4.8	2.5	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
UPF0058	PF01893.11	gi|292655827|ref|YP_003535724.1|	-	2.9e-21	75.3	0.1	3.4e-21	75.1	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.7	gi|292655828|ref|YP_003535725.1|	-	1.1e-38	131.3	0.1	1.4e-38	131.0	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
OGG_N	PF07934.7	gi|292655829|ref|YP_003535726.1|	-	2.1e-16	59.9	0.0	3.8e-16	59.0	0.0	1.4	1	0	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HhH-GPD	PF00730.20	gi|292655829|ref|YP_003535726.1|	-	6.1e-14	52.2	0.0	8.9e-14	51.6	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
MS_channel	PF00924.13	gi|292655830|ref|YP_003535727.1|	-	2.2e-27	95.7	1.3	5.6e-27	94.4	0.9	1.8	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
Glyco_hydro_77	PF02446.12	gi|292655831|ref|YP_003535728.1|	-	1e-129	433.3	0.0	1.2e-129	433.1	0.0	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
tRNA-synt_2b	PF00587.20	gi|292655832|ref|YP_003535729.1|	-	2.3e-38	131.4	0.0	4.2e-38	130.6	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|292655832|ref|YP_003535729.1|	-	3.5e-19	68.5	0.4	8.8e-19	67.2	0.2	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA_SAD	PF07973.9	gi|292655832|ref|YP_003535729.1|	-	1.5e-13	50.4	0.0	3.2e-13	49.3	0.0	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
TGS	PF02824.16	gi|292655832|ref|YP_003535729.1|	-	5.1e-13	48.6	0.2	1e-12	47.6	0.1	1.6	1	0	0	1	1	1	1	TGS	domain
Abhydrolase_5	PF12695.2	gi|292655833|ref|YP_003535730.1|	-	3.7e-10	39.7	0.0	6.4e-10	38.9	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|292655833|ref|YP_003535730.1|	-	1.6e-08	34.7	9.1	1.6e-08	34.7	6.3	2.8	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
DUF2048	PF09752.4	gi|292655833|ref|YP_003535730.1|	-	5.8e-07	28.7	0.0	1.8e-06	27.0	0.0	1.7	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2048)
Peptidase_S15	PF02129.13	gi|292655833|ref|YP_003535730.1|	-	0.0019	17.6	0.7	0.0038	16.6	0.5	1.4	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
MFS_1	PF07690.11	gi|292655834|ref|YP_003535731.1|	-	2.5e-24	85.6	58.7	4.1e-19	68.5	25.6	2.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF939	PF06081.6	gi|292655834|ref|YP_003535731.1|	-	0.00066	19.5	2.6	0.002	18.0	1.8	1.8	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF939)
DUF1700	PF08006.6	gi|292655834|ref|YP_003535731.1|	-	0.095	11.9	0.3	0.32	10.2	0.2	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
2CSK_N	PF08521.5	gi|292655835|ref|YP_003535732.1|	-	0.089	12.3	1.0	0.13	11.7	0.7	1.2	1	0	0	1	1	1	0	Two-component	sensor	kinase	N-terminal
DUF389	PF04087.9	gi|292655836|ref|YP_003535733.1|	-	0.0045	16.9	1.1	0.0063	16.4	0.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF389)
Bac_export_3	PF01313.14	gi|292655836|ref|YP_003535733.1|	-	6.5	6.5	7.7	2.4	7.8	0.3	2.1	2	0	0	2	2	2	0	Bacterial	export	proteins,	family	3
TrkA_N	PF02254.13	gi|292655837|ref|YP_003535734.1|	-	3.3e-20	72.2	1.3	9.5e-20	70.7	0.9	1.9	1	0	0	1	1	1	1	TrkA-N	domain
DHH	PF01368.15	gi|292655837|ref|YP_003535734.1|	-	3.9e-13	49.2	0.0	1e-12	47.9	0.0	1.7	1	0	0	1	1	1	1	DHH	family
F420_oxidored	PF03807.12	gi|292655837|ref|YP_003535734.1|	-	5.7e-07	29.8	0.2	3e-06	27.5	0.1	2.3	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|292655837|ref|YP_003535734.1|	-	7.5e-07	28.7	0.0	2.2e-05	23.9	0.0	2.3	1	1	1	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_10	PF13460.1	gi|292655837|ref|YP_003535734.1|	-	3.3e-06	27.2	1.6	7.7e-06	26.0	0.7	1.9	2	0	0	2	2	2	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|292655837|ref|YP_003535734.1|	-	5.1e-06	25.7	0.3	8.7e-06	24.9	0.2	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|292655837|ref|YP_003535734.1|	-	6.2e-06	26.0	0.0	1.3e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DHHA1	PF02272.14	gi|292655837|ref|YP_003535734.1|	-	2.2e-05	24.0	0.0	5.1e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	DHHA1	domain
IlvN	PF07991.7	gi|292655837|ref|YP_003535734.1|	-	2.3e-05	23.7	0.1	4.9e-05	22.7	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|292655837|ref|YP_003535734.1|	-	0.00016	21.5	0.0	0.00028	20.7	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|292655837|ref|YP_003535734.1|	-	0.00031	20.1	0.1	0.00076	18.9	0.0	1.8	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292655837|ref|YP_003535734.1|	-	0.00062	19.9	0.9	0.0021	18.2	0.4	2.1	1	1	1	2	2	2	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|292655837|ref|YP_003535734.1|	-	0.0043	16.7	0.0	0.0099	15.5	0.0	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|292655837|ref|YP_003535734.1|	-	0.0084	15.2	0.0	0.015	14.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292655837|ref|YP_003535734.1|	-	0.017	15.1	0.0	0.05	13.6	0.0	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|292655837|ref|YP_003535734.1|	-	0.026	13.4	0.1	0.086	11.7	0.0	1.9	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
ThiF	PF00899.16	gi|292655837|ref|YP_003535734.1|	-	0.027	14.3	1.0	0.072	12.9	0.4	2.1	1	1	1	2	2	2	0	ThiF	family
2-Hacid_dh_C	PF02826.14	gi|292655837|ref|YP_003535734.1|	-	0.028	13.5	0.0	0.06	12.4	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.1	gi|292655837|ref|YP_003535734.1|	-	0.052	13.8	0.5	0.25	11.6	0.1	2.2	1	1	1	2	2	2	0	XdhC	Rossmann	domain
ADH_zinc_N	PF00107.21	gi|292655837|ref|YP_003535734.1|	-	0.06	12.8	0.1	0.29	10.6	0.0	2.1	3	0	0	3	3	2	0	Zinc-binding	dehydrogenase
adh_short	PF00106.20	gi|292655837|ref|YP_003535734.1|	-	0.12	12.2	5.0	0.14	12.0	0.6	2.8	2	1	1	3	3	3	0	short	chain	dehydrogenase
NAD_binding_3	PF03447.11	gi|292655837|ref|YP_003535734.1|	-	0.15	12.4	2.5	3.2	8.1	0.1	2.5	1	1	1	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
PRC	PF05239.11	gi|292655838|ref|YP_003535735.1|	-	1.2e-13	50.7	0.7	1.5e-13	50.3	0.5	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
DUF162	PF02589.10	gi|292655839|ref|YP_003535736.1|	-	5.7e-40	136.8	0.2	1e-39	136.0	0.2	1.4	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|292655839|ref|YP_003535736.1|	-	5.3e-09	35.9	4.4	1.1e-08	34.9	3.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|292655839|ref|YP_003535736.1|	-	3.3e-08	33.8	5.1	2e-05	24.9	0.3	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292655839|ref|YP_003535736.1|	-	1.8e-07	30.8	3.1	0.0012	18.5	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|292655839|ref|YP_003535736.1|	-	1.1e-06	28.8	3.7	2.9e-06	27.5	2.6	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|292655839|ref|YP_003535736.1|	-	1.6e-06	28.3	2.8	3.5e-06	27.2	1.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|292655839|ref|YP_003535736.1|	-	5.8e-05	22.7	12.8	0.00066	19.4	1.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|292655839|ref|YP_003535736.1|	-	0.00011	21.8	12.3	0.0042	16.9	2.4	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|292655839|ref|YP_003535736.1|	-	0.00018	20.9	13.4	0.0011	18.5	1.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|292655839|ref|YP_003535736.1|	-	0.00019	21.6	9.8	0.0021	18.3	7.1	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292655839|ref|YP_003535736.1|	-	0.00099	18.9	10.9	0.0086	15.9	7.6	2.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|292655839|ref|YP_003535736.1|	-	0.01	16.0	14.8	0.045	14.0	2.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Abhydrolase_6	PF12697.2	gi|292655839|ref|YP_003535736.1|	-	0.013	15.3	0.8	0.045	13.6	0.3	2.1	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
Fer4_20	PF14691.1	gi|292655839|ref|YP_003535736.1|	-	0.04	13.5	1.8	0.094	12.3	0.1	2.2	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.2	gi|292655839|ref|YP_003535736.1|	-	0.09	13.3	17.6	0.25	11.9	3.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|292655839|ref|YP_003535736.1|	-	0.8	10.4	10.3	4.1	8.2	7.2	2.1	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|292655839|ref|YP_003535736.1|	-	0.81	10.2	5.9	0.92	10.1	0.2	3.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF162	PF02589.10	gi|292655840|ref|YP_003535737.1|	-	1.5e-21	76.7	0.0	2.3e-21	76.1	0.0	1.4	1	1	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
HTH_20	PF12840.2	gi|292655842|ref|YP_003535739.1|	-	0.00017	21.3	0.2	0.00031	20.4	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292655842|ref|YP_003535739.1|	-	0.00023	20.7	0.0	0.00041	19.9	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|292655842|ref|YP_003535739.1|	-	0.0094	15.5	0.1	0.018	14.5	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|292655842|ref|YP_003535739.1|	-	0.023	14.3	0.0	0.039	13.6	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292655842|ref|YP_003535739.1|	-	0.08	12.6	0.6	0.16	11.6	0.2	1.6	2	0	0	2	2	2	0	MarR	family
HTH_DeoR	PF08220.7	gi|292655842|ref|YP_003535739.1|	-	0.083	12.4	0.1	0.15	11.5	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Lactate_perm	PF02652.9	gi|292655843|ref|YP_003535740.1|	-	8.2e-108	361.1	34.6	1.1e-107	360.7	24.0	1.2	1	0	0	1	1	1	1	L-lactate	permease
FAD-oxidase_C	PF02913.14	gi|292655844|ref|YP_003535741.1|	-	1.2e-62	211.4	0.1	3.3e-62	210.0	0.1	1.8	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|292655844|ref|YP_003535741.1|	-	2.9e-43	146.6	0.3	5.9e-43	145.6	0.2	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|292655844|ref|YP_003535741.1|	-	4.4e-07	30.1	3.5	8.4e-07	29.2	2.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|292655844|ref|YP_003535741.1|	-	7.2e-07	29.1	5.0	1.4e-06	28.2	3.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|292655844|ref|YP_003535741.1|	-	1.6e-05	24.8	0.0	0.0012	18.8	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_18	PF13746.1	gi|292655844|ref|YP_003535741.1|	-	0.00097	19.5	2.7	0.0012	19.1	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292655844|ref|YP_003535741.1|	-	0.015	15.0	4.0	0.037	13.8	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.5	gi|292655844|ref|YP_003535741.1|	-	0.033	13.3	0.0	0.058	12.5	0.0	1.3	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_21	PF14697.1	gi|292655844|ref|YP_003535741.1|	-	0.24	11.2	9.0	0.048	13.5	0.3	2.6	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|292655844|ref|YP_003535741.1|	-	5.5	7.4	8.5	1.1e+02	3.3	6.4	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|292655844|ref|YP_003535741.1|	-	6.1	7.1	10.2	0.89	9.8	1.9	2.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
CBS	PF00571.23	gi|292655845|ref|YP_003535742.1|	-	1.4e-20	72.7	2.5	2.1e-11	43.4	0.2	2.5	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.13	gi|292655845|ref|YP_003535742.1|	-	5.6e-08	32.7	0.1	9.9e-08	31.9	0.1	1.4	1	0	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.6	gi|292655845|ref|YP_003535742.1|	-	0.0075	16.1	0.1	0.06	13.1	0.1	2.1	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
Aminotran_1_2	PF00155.16	gi|292655846|ref|YP_003535743.1|	-	1.8e-28	99.5	0.0	3.2e-28	98.7	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
HTH_20	PF12840.2	gi|292655847|ref|YP_003535744.1|	-	2.4e-08	33.6	1.1	9.5e-08	31.7	0.2	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655847|ref|YP_003535744.1|	-	2.5e-06	27.0	0.6	5.6e-06	25.9	0.4	1.6	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|292655847|ref|YP_003535744.1|	-	2.7e-06	26.9	0.0	4.4e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|292655847|ref|YP_003535744.1|	-	8.5e-06	25.3	0.0	1.6e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292655847|ref|YP_003535744.1|	-	2.8e-05	23.5	2.1	5.7e-05	22.6	0.1	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292655847|ref|YP_003535744.1|	-	0.00019	21.3	0.0	0.00038	20.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.16	gi|292655847|ref|YP_003535744.1|	-	0.0006	19.1	0.1	0.0013	18.0	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.7	gi|292655847|ref|YP_003535744.1|	-	0.00076	19.0	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_36	PF13730.1	gi|292655847|ref|YP_003535744.1|	-	0.0012	18.9	0.0	0.0023	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|292655847|ref|YP_003535744.1|	-	0.0022	17.6	0.0	0.0045	16.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|292655847|ref|YP_003535744.1|	-	0.0039	16.9	0.0	0.0056	16.4	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|292655847|ref|YP_003535744.1|	-	0.013	15.5	0.0	0.024	14.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Gly_kinase	PF02595.10	gi|292655847|ref|YP_003535744.1|	-	0.017	13.8	0.1	0.024	13.3	0.1	1.1	1	0	0	1	1	1	0	Glycerate	kinase	family
Trp_repressor	PF01371.14	gi|292655847|ref|YP_003535744.1|	-	0.019	14.8	0.0	0.037	13.9	0.0	1.4	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_41	PF14502.1	gi|292655847|ref|YP_003535744.1|	-	0.025	14.2	0.0	0.17	11.5	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|292655847|ref|YP_003535744.1|	-	0.038	13.8	0.0	0.057	13.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_CodY	PF08222.6	gi|292655847|ref|YP_003535744.1|	-	0.048	13.0	0.0	0.098	12.0	0.0	1.5	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292655847|ref|YP_003535744.1|	-	0.054	13.8	0.1	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|292655847|ref|YP_003535744.1|	-	0.061	13.3	0.0	0.16	12.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292655847|ref|YP_003535744.1|	-	0.12	11.9	0.2	0.25	10.9	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_30	PF13556.1	gi|292655847|ref|YP_003535744.1|	-	0.17	11.4	0.3	2.4	7.8	0.1	2.7	1	1	2	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
DUF123	PF01986.11	gi|292655848|ref|YP_003535745.1|	-	1.4e-26	92.5	0.0	1.7e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
DUF393	PF04134.7	gi|292655849|ref|YP_003535746.1|	-	5.5e-07	30.6	0.2	7.5e-07	30.2	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
DEAD	PF00270.24	gi|292655850|ref|YP_003535747.1|	-	1.3e-21	76.8	0.0	1.9e-21	76.2	0.0	1.2	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|292655850|ref|YP_003535747.1|	-	1.2e-17	64.2	0.1	3.2e-17	62.8	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|292655850|ref|YP_003535747.1|	-	3.8e-10	39.4	0.1	2e-09	37.1	0.0	2.2	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
RGP	PF03214.8	gi|292655851|ref|YP_003535748.1|	-	4.6e-17	61.7	0.0	5.9e-17	61.4	0.0	1.1	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
Glyco_tranf_2_3	PF13641.1	gi|292655851|ref|YP_003535748.1|	-	0.018	14.8	0.9	0.032	14.0	0.6	1.7	1	1	0	1	1	1	0	Glycosyltransferase	like	family	2
SBP_bac_6	PF13343.1	gi|292655852|ref|YP_003535749.1|	-	5.6e-17	61.8	0.0	7.3e-17	61.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|292655852|ref|YP_003535749.1|	-	9.7e-14	51.7	0.1	1.3e-13	51.3	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|292655852|ref|YP_003535749.1|	-	6.9e-12	45.4	0.2	9.6e-05	22.1	0.2	2.0	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292655852|ref|YP_003535749.1|	-	1.7e-08	34.5	0.7	5.3e-08	32.9	0.5	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.4	gi|292655852|ref|YP_003535749.1|	-	0.054	12.6	0.8	0.13	11.4	0.5	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|292655852|ref|YP_003535749.1|	-	0.2	11.7	5.3	0.71	10.0	3.7	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|292655853|ref|YP_003535750.1|	-	1.1e-27	96.7	40.8	5.2e-15	55.4	10.5	3.6	3	2	0	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|292655854|ref|YP_003535751.1|	-	1.8e-34	119.0	0.0	2.7e-34	118.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655854|ref|YP_003535751.1|	-	6.2e-07	29.6	0.1	0.0035	17.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|292655854|ref|YP_003535751.1|	-	1.7e-06	27.9	0.3	5.6e-06	26.2	0.0	2.1	2	0	0	2	2	1	1	TOBE	domain
AAA_16	PF13191.1	gi|292655854|ref|YP_003535751.1|	-	1.2e-05	25.4	0.1	1.9e-05	24.7	0.1	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.10	gi|292655854|ref|YP_003535751.1|	-	0.0012	17.5	0.0	0.0017	17.1	0.0	1.2	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|292655854|ref|YP_003535751.1|	-	0.0025	17.9	0.5	0.015	15.4	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|292655854|ref|YP_003535751.1|	-	0.0029	17.8	0.0	0.025	14.7	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|292655854|ref|YP_003535751.1|	-	0.0097	14.7	0.0	0.014	14.2	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
DUF258	PF03193.11	gi|292655854|ref|YP_003535751.1|	-	0.019	14.1	0.0	0.031	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|292655854|ref|YP_003535751.1|	-	0.023	14.5	0.2	0.11	12.3	0.2	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|292655854|ref|YP_003535751.1|	-	0.035	14.9	0.1	0.073	13.8	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|292655854|ref|YP_003535751.1|	-	0.062	13.1	0.4	0.27	11.1	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|292655854|ref|YP_003535751.1|	-	0.067	12.2	0.0	0.29	10.1	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_28	PF13521.1	gi|292655854|ref|YP_003535751.1|	-	0.091	12.7	0.1	0.77	9.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|292655854|ref|YP_003535751.1|	-	0.11	12.3	0.1	0.32	10.7	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
Arch_ATPase	PF01637.13	gi|292655854|ref|YP_003535751.1|	-	0.19	11.3	0.0	0.37	10.4	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_5	PF07728.9	gi|292655854|ref|YP_003535751.1|	-	0.22	11.2	0.6	0.73	9.5	0.1	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
PMT_2	PF13231.1	gi|292655855|ref|YP_003535752.1|	-	1.8e-11	44.2	15.3	1.8e-11	44.2	10.6	2.9	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glyco_transf_22	PF03901.12	gi|292655855|ref|YP_003535752.1|	-	0.022	13.7	1.7	0.035	13.1	1.2	1.2	1	0	0	1	1	1	0	Alg9-like	mannosyltransferase	family
MFS_1	PF07690.11	gi|292655856|ref|YP_003535753.1|	-	2.3e-21	75.8	25.5	3.3e-21	75.4	17.7	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Herpes_glycop	PF01528.11	gi|292655856|ref|YP_003535753.1|	-	4.2	5.9	10.3	0.16	10.6	0.2	2.3	2	0	0	2	2	2	0	Herpesvirus	glycoprotein	M
Alpha-amylase	PF00128.19	gi|292655857|ref|YP_003535754.1|	-	6.4e-55	186.7	0.2	1.1e-53	182.6	0.1	2.1	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
DUF3459	PF11941.3	gi|292655857|ref|YP_003535754.1|	-	7.9e-06	25.9	0.2	3.9e-05	23.6	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3459)
Alpha-amylase_C	PF02806.13	gi|292655857|ref|YP_003535754.1|	-	0.0016	18.4	0.0	0.0066	16.5	0.0	2.0	2	0	0	2	2	2	1	Alpha	amylase,	C-terminal	all-beta	domain
hDGE_amylase	PF14701.1	gi|292655857|ref|YP_003535754.1|	-	0.0035	16.3	0.0	0.0074	15.2	0.0	1.5	2	0	0	2	2	2	1	glucanotransferase	domain	of	human	glycogen	debranching	enzyme
Radical_SAM	PF04055.16	gi|292655857|ref|YP_003535754.1|	-	0.013	15.6	0.0	0.26	11.4	0.0	2.5	2	0	0	2	2	2	0	Radical	SAM	superfamily
Surp	PF01805.15	gi|292655857|ref|YP_003535754.1|	-	0.053	13.1	2.8	1.7	8.3	0.0	2.5	2	0	0	2	2	2	0	Surp	module
DUF4434	PF14488.1	gi|292655857|ref|YP_003535754.1|	-	0.084	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4434)
Glucodextran_N	PF09137.6	gi|292655858|ref|YP_003535755.1|	-	2e-37	128.8	0.1	1.8e-35	122.4	0.1	2.5	1	1	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_15	PF00723.16	gi|292655858|ref|YP_003535755.1|	-	1.8e-30	105.9	1.1	1.8e-21	76.2	0.0	4.2	3	1	0	3	3	3	2	Glycosyl	hydrolases	family	15
Prenyltrans_1	PF13243.1	gi|292655858|ref|YP_003535755.1|	-	0.068	13.1	5.3	0.56	10.2	0.2	3.8	3	1	0	3	3	3	0	Prenyltransferase-like
TAN	PF11640.3	gi|292655858|ref|YP_003535755.1|	-	0.39	10.4	0.0	2.3	7.9	0.0	1.9	2	0	0	2	2	2	0	Telomere-length	maintenance	and	DNA	damage	repair
Polyketide_cyc	PF03364.15	gi|292655859|ref|YP_003535756.1|	-	6.6e-12	45.5	0.1	8.7e-12	45.1	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.4	gi|292655859|ref|YP_003535756.1|	-	7.1e-11	42.4	2.1	8.5e-11	42.1	1.4	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Response_reg	PF00072.19	gi|292655860|ref|YP_003535757.1|	-	1.3e-20	73.4	0.0	2.7e-20	72.4	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|292655860|ref|YP_003535757.1|	-	1.5e-15	56.8	0.0	6e-15	54.9	0.0	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292655860|ref|YP_003535757.1|	-	4.5e-15	55.4	0.1	1.6e-14	53.6	0.1	2.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.1	gi|292655860|ref|YP_003535757.1|	-	2.9e-12	46.7	0.0	8.9e-12	45.2	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
PAS_9	PF13426.1	gi|292655860|ref|YP_003535757.1|	-	8e-08	32.6	0.0	2.1e-07	31.2	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|292655860|ref|YP_003535757.1|	-	6e-07	29.4	0.1	1.9e-06	27.8	0.1	2.0	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|292655860|ref|YP_003535757.1|	-	1.7e-06	27.8	0.0	3.7e-06	26.6	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.21	gi|292655860|ref|YP_003535757.1|	-	8.9e-06	25.9	0.3	4.2e-05	23.7	0.1	2.2	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.1	gi|292655860|ref|YP_003535757.1|	-	4.4e-05	24.0	0.1	0.00013	22.5	0.0	1.9	2	0	0	2	2	1	1	GAF	domain
HATPase_c_2	PF13581.1	gi|292655860|ref|YP_003535757.1|	-	0.00056	19.6	0.1	0.002	17.8	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|292655860|ref|YP_003535757.1|	-	0.01	15.6	0.0	0.038	13.8	0.0	2.0	1	0	0	1	1	1	0	PAS	domain
HATPase_c_3	PF13589.1	gi|292655860|ref|YP_003535757.1|	-	0.055	13.1	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.1	gi|292655860|ref|YP_003535757.1|	-	0.15	11.6	0.0	0.3	10.6	0.0	1.5	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
EamA	PF00892.15	gi|292655861|ref|YP_003535758.1|	-	1.6e-26	92.8	20.7	1.4e-14	54.1	4.5	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|292655861|ref|YP_003535758.1|	-	6.5e-09	35.9	24.0	3.2e-08	33.7	3.4	3.0	2	1	1	3	3	3	2	Multidrug	resistance	efflux	transporter
DUF914	PF06027.7	gi|292655861|ref|YP_003535758.1|	-	0.005	15.7	1.4	0.0074	15.1	1.0	1.4	1	0	0	1	1	1	1	Eukaryotic	protein	of	unknown	function	(DUF914)
Methyltransf_11	PF08241.7	gi|292655862|ref|YP_003535759.1|	-	2.4e-20	72.8	0.1	5.2e-20	71.7	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292655862|ref|YP_003535759.1|	-	6.1e-16	58.5	0.1	1.1e-15	57.7	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292655862|ref|YP_003535759.1|	-	6.5e-10	39.2	0.1	1.2e-09	38.4	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292655862|ref|YP_003535759.1|	-	7.5e-10	38.5	0.0	9.4e-10	38.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292655862|ref|YP_003535759.1|	-	4.4e-08	32.5	0.0	6.7e-08	31.9	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|292655862|ref|YP_003535759.1|	-	2.8e-06	27.9	0.3	6.8e-06	26.6	0.2	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292655862|ref|YP_003535759.1|	-	3.5e-06	27.4	0.0	6.6e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|292655862|ref|YP_003535759.1|	-	8.8e-06	24.3	0.2	1.2e-05	23.8	0.1	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_26	PF13659.1	gi|292655862|ref|YP_003535759.1|	-	2.2e-05	24.4	4.6	2.2e-05	24.4	3.2	2.0	2	1	0	2	2	2	1	Methyltransferase	domain
Hydrolase	PF00702.21	gi|292655862|ref|YP_003535759.1|	-	0.05	14.0	1.8	0.078	13.3	1.3	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
PBP_like	PF12727.2	gi|292655862|ref|YP_003535759.1|	-	0.1	11.4	2.1	3.1	6.7	1.0	2.6	3	0	0	3	3	3	0	PBP	superfamily	domain
QueC	PF06508.8	gi|292655863|ref|YP_003535760.1|	-	7.3e-72	241.0	0.0	8.3e-72	240.8	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|292655863|ref|YP_003535760.1|	-	8.4e-08	31.9	0.0	1.4e-07	31.2	0.0	1.3	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.11	gi|292655863|ref|YP_003535760.1|	-	0.00036	19.2	0.0	0.00047	18.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|292655863|ref|YP_003535760.1|	-	0.0011	18.5	0.1	0.0019	17.7	0.1	1.4	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|292655863|ref|YP_003535760.1|	-	0.004	16.0	0.0	0.0066	15.3	0.0	1.4	1	1	0	1	1	1	1	NAD	synthase
Radical_SAM	PF04055.16	gi|292655864|ref|YP_003535761.1|	-	1.1e-22	81.0	0.1	6.2e-22	78.5	0.1	1.9	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|292655864|ref|YP_003535761.1|	-	5.6e-16	58.6	0.0	9e-16	57.9	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|292655864|ref|YP_003535761.1|	-	5.3e-08	33.0	0.0	7.9e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PTPS	PF01242.14	gi|292655865|ref|YP_003535762.1|	-	2.3e-23	82.1	0.0	3e-23	81.8	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
4HBT_2	PF13279.1	gi|292655866|ref|YP_003535763.1|	-	5.2e-14	52.7	0.0	6.7e-14	52.3	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.17	gi|292655866|ref|YP_003535763.1|	-	4e-11	42.8	0.4	8e-11	41.9	0.0	1.7	2	1	0	2	2	2	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.12	gi|292655866|ref|YP_003535763.1|	-	4.2e-06	25.9	0.0	7.8e-05	21.7	0.0	2.0	1	1	1	2	2	2	2	Acyl-ACP	thioesterase
Sigma70_r4_2	PF08281.7	gi|292655867|ref|YP_003535764.1|	-	0.047	13.1	0.0	0.093	12.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Fer2	PF00111.22	gi|292655868|ref|YP_003535765.1|	-	5.8e-09	35.5	0.5	1.9e-08	33.9	0.2	2.0	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|292655868|ref|YP_003535765.1|	-	0.008	15.9	0.1	0.012	15.4	0.1	1.5	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
SNF2_N	PF00176.18	gi|292655869|ref|YP_003535766.1|	-	6.9e-15	54.6	0.0	1.1e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.10	gi|292655869|ref|YP_003535766.1|	-	1.1e-14	54.6	0.0	2.6e-14	53.4	0.0	1.6	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|292655869|ref|YP_003535766.1|	-	7e-10	38.6	0.0	1.5e-09	37.5	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|292655869|ref|YP_003535766.1|	-	3.1e-08	33.2	0.0	5.5e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|292655869|ref|YP_003535766.1|	-	2.5e-05	23.9	0.3	0.00018	21.2	0.0	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|292655869|ref|YP_003535766.1|	-	0.0012	18.9	0.1	0.03	14.4	0.1	2.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|292655869|ref|YP_003535766.1|	-	0.0015	18.1	0.0	0.0089	15.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Flavi_DEAD	PF07652.9	gi|292655869|ref|YP_003535766.1|	-	0.022	14.5	0.0	0.043	13.5	0.0	1.5	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
TrmB	PF01978.14	gi|292655869|ref|YP_003535766.1|	-	0.035	13.8	0.0	0.094	12.4	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292655869|ref|YP_003535766.1|	-	0.038	13.6	0.1	0.097	12.3	0.1	1.7	1	0	0	1	1	1	0	MarR	family
Zeta_toxin	PF06414.7	gi|292655869|ref|YP_003535766.1|	-	0.061	12.4	1.1	0.8	8.7	0.6	2.4	2	1	0	2	2	2	0	Zeta	toxin
DUF2075	PF09848.4	gi|292655869|ref|YP_003535766.1|	-	0.062	12.2	0.0	0.12	11.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Cdc6_C	PF09079.6	gi|292655871|ref|YP_003535768.1|	-	2.2e-19	68.9	0.0	5.1e-19	67.7	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|292655871|ref|YP_003535768.1|	-	4e-15	56.1	0.2	1.4e-14	54.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292655871|ref|YP_003535768.1|	-	6.3e-14	52.3	0.9	2.2e-12	47.3	0.0	3.0	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292655871|ref|YP_003535768.1|	-	5e-06	26.7	0.2	1.9e-05	24.8	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292655871|ref|YP_003535768.1|	-	5.9e-06	26.0	0.0	1.8e-05	24.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|292655871|ref|YP_003535768.1|	-	8e-06	25.4	0.0	2e-05	24.1	0.0	1.7	2	0	0	2	2	1	1	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|292655871|ref|YP_003535768.1|	-	9.6e-05	22.0	0.0	0.00019	21.1	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activ_2	PF14532.1	gi|292655871|ref|YP_003535768.1|	-	0.00084	19.3	0.0	0.0019	18.2	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|292655871|ref|YP_003535768.1|	-	0.00086	18.2	0.0	0.0016	17.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.9	gi|292655871|ref|YP_003535768.1|	-	0.0012	18.7	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
PhoH	PF02562.11	gi|292655871|ref|YP_003535768.1|	-	0.0014	17.8	0.7	1.4	8.0	0.0	2.7	2	1	1	3	3	3	2	PhoH-like	protein
DEAD	PF00270.24	gi|292655871|ref|YP_003535768.1|	-	0.0021	17.5	1.6	0.22	10.9	1.1	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
RNA_helicase	PF00910.17	gi|292655871|ref|YP_003535768.1|	-	0.0027	17.8	0.0	0.0057	16.8	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
AAA_24	PF13479.1	gi|292655871|ref|YP_003535768.1|	-	0.0028	17.2	0.2	0.0042	16.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
KAP_NTPase	PF07693.9	gi|292655871|ref|YP_003535768.1|	-	0.0075	15.2	0.3	0.37	9.7	0.0	2.3	1	1	0	2	2	2	1	KAP	family	P-loop	domain
IstB_IS21	PF01695.12	gi|292655871|ref|YP_003535768.1|	-	0.014	14.8	0.8	0.31	10.4	0.0	2.3	1	1	0	2	2	2	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|292655871|ref|YP_003535768.1|	-	0.016	14.4	0.0	0.029	13.5	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Arch_ATPase	PF01637.13	gi|292655871|ref|YP_003535768.1|	-	0.019	14.6	0.0	0.032	13.9	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
DUF2075	PF09848.4	gi|292655871|ref|YP_003535768.1|	-	0.02	13.8	0.0	0.029	13.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.17	gi|292655871|ref|YP_003535768.1|	-	0.036	12.9	0.0	0.057	12.2	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
FtsK_SpoIIIE	PF01580.13	gi|292655871|ref|YP_003535768.1|	-	0.039	13.4	0.0	0.091	12.2	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF87	PF01935.12	gi|292655871|ref|YP_003535768.1|	-	0.045	13.5	0.6	0.1	12.4	0.1	1.8	2	0	0	2	2	1	0	Domain	of	unknown	function	DUF87
T2SE	PF00437.15	gi|292655871|ref|YP_003535768.1|	-	0.056	12.3	0.1	0.096	11.5	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
KaiC	PF06745.8	gi|292655871|ref|YP_003535768.1|	-	0.088	11.9	0.1	0.18	10.8	0.0	1.5	1	0	0	1	1	1	0	KaiC
AAA_25	PF13481.1	gi|292655871|ref|YP_003535768.1|	-	0.1	12.0	0.9	0.65	9.3	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
Zot	PF05707.7	gi|292655871|ref|YP_003535768.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
AAA_17	PF13207.1	gi|292655871|ref|YP_003535768.1|	-	0.14	12.9	0.7	0.33	11.7	0.3	2.2	1	1	0	1	1	1	0	AAA	domain
HTH_29	PF13551.1	gi|292655871|ref|YP_003535768.1|	-	0.19	11.9	1.1	0.44	10.7	0.8	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
MarR_2	PF12802.2	gi|292655872|ref|YP_003535769.1|	-	0.0027	17.3	0.0	0.0061	16.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292655872|ref|YP_003535769.1|	-	0.012	15.2	0.0	0.025	14.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_45	PF14947.1	gi|292655872|ref|YP_003535769.1|	-	0.036	13.8	0.0	0.07	12.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|292655872|ref|YP_003535769.1|	-	0.07	12.9	0.2	0.14	11.9	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RHS_repeat	PF05593.9	gi|292655872|ref|YP_003535769.1|	-	0.13	12.4	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	RHS	Repeat
Crp	PF00325.15	gi|292655872|ref|YP_003535769.1|	-	0.6	9.6	2.7	0.8	9.2	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	crp	family
TBP	PF00352.16	gi|292655873|ref|YP_003535770.1|	-	1.4e-65	216.6	0.0	3.2e-32	109.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|292655873|ref|YP_003535770.1|	-	0.00021	21.2	0.0	0.61	10.1	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
CENP-F_C_Rb_bdg	PF10490.4	gi|292655873|ref|YP_003535770.1|	-	0.2	10.9	0.6	8.1	5.8	0.2	2.2	2	0	0	2	2	2	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
FaeA	PF04703.7	gi|292655874|ref|YP_003535771.1|	-	0.046	13.8	0.0	0.13	12.4	0.0	1.7	1	0	0	1	1	1	0	FaeA-like	protein
SWIM	PF04434.12	gi|292655876|ref|YP_003535773.1|	-	1.3e-06	27.7	0.3	2.8e-06	26.6	0.2	1.5	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2274	PF10038.4	gi|292655876|ref|YP_003535773.1|	-	0.0032	17.5	0.1	0.012	15.7	0.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2274)
TPR_14	PF13428.1	gi|292655876|ref|YP_003535773.1|	-	0.048	14.3	6.7	1.5	9.6	0.0	5.0	5	0	0	5	5	5	0	Tetratricopeptide	repeat
Uteroglobin	PF01099.12	gi|292655876|ref|YP_003535773.1|	-	0.19	11.5	0.7	13	5.7	0.0	2.9	3	0	0	3	3	3	0	Uteroglobin	family
TPR_16	PF13432.1	gi|292655876|ref|YP_003535773.1|	-	0.93	10.2	6.7	30	5.4	0.6	4.5	4	0	0	4	4	4	0	Tetratricopeptide	repeat
Helicase_C	PF00271.26	gi|292655877|ref|YP_003535774.1|	-	3.6e-19	68.3	1.1	6.4e-19	67.5	0.0	1.9	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292655877|ref|YP_003535774.1|	-	3.7e-19	69.2	0.0	5.8e-18	65.3	0.0	2.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|292655877|ref|YP_003535774.1|	-	3.6e-07	29.8	0.0	2.1e-06	27.3	0.0	2.2	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|292655877|ref|YP_003535774.1|	-	0.013	15.6	0.0	0.055	13.6	0.0	2.0	2	1	1	3	3	3	0	AAA	domain
DUF790	PF05626.6	gi|292655878|ref|YP_003535775.1|	-	4.2e-129	430.3	0.0	4.8e-129	430.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Calci_bind_CcbP	PF11535.3	gi|292655879|ref|YP_003535776.1|	-	6.6e-33	113.1	0.4	7.6e-33	112.9	0.3	1.0	1	0	0	1	1	1	1	Calcium	binding
PRiA4_ORF3	PF07929.6	gi|292655880|ref|YP_003535777.1|	-	0.024	14.0	0.0	0.037	13.4	0.0	1.2	1	0	0	1	1	1	0	Plasmid	pRiA4b	ORF-3-like	protein
DUF3141	PF11339.3	gi|292655881|ref|YP_003535778.1|	-	0.042	12.2	0.1	0.06	11.6	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3141)
zf-C2H2_6	PF13912.1	gi|292655882|ref|YP_003535779.1|	-	0.043	13.7	0.1	0.072	13.0	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
OmpH	PF03938.9	gi|292655882|ref|YP_003535779.1|	-	0.045	13.6	0.0	0.074	12.9	0.0	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
zf-C2H2	PF00096.21	gi|292655882|ref|YP_003535779.1|	-	0.13	12.6	0.3	0.25	11.7	0.2	1.5	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Pheromone	PF08015.6	gi|292655882|ref|YP_003535779.1|	-	0.14	12.9	3.5	0.17	12.7	1.0	2.2	2	1	1	3	3	3	0	Fungal	mating-type	pheromone
HTH_16	PF12645.2	gi|292655882|ref|YP_003535779.1|	-	0.27	11.1	0.1	0.27	11.1	0.1	2.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
PRiA4_ORF3	PF07929.6	gi|292655883|ref|YP_003535780.1|	-	7.6e-13	48.2	0.3	2.2e-12	46.7	0.2	1.6	1	1	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
SWIM	PF04434.12	gi|292655884|ref|YP_003535781.1|	-	3.9e-07	29.4	0.1	7.4e-07	28.5	0.1	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Thioesterase	PF00975.15	gi|292655884|ref|YP_003535781.1|	-	0.14	12.3	2.0	0.19	11.9	0.3	1.8	2	1	0	2	2	2	0	Thioesterase	domain
DEAD	PF00270.24	gi|292655885|ref|YP_003535782.1|	-	2.9e-25	88.6	0.0	5e-25	87.9	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|292655885|ref|YP_003535782.1|	-	1.4e-16	60.8	0.2	3.4e-16	59.5	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|292655885|ref|YP_003535782.1|	-	2.7e-09	36.7	0.0	2.9e-08	33.4	0.0	2.6	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292655885|ref|YP_003535782.1|	-	0.00097	19.0	0.0	0.0017	18.1	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|292655885|ref|YP_003535782.1|	-	0.0057	15.4	0.0	0.0085	14.9	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
HHH_5	PF14520.1	gi|292655886|ref|YP_003535783.1|	-	6.6e-05	23.0	0.0	0.00012	22.2	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|292655886|ref|YP_003535783.1|	-	0.00024	20.9	0.0	0.00093	19.0	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DUF2800	PF10926.3	gi|292655887|ref|YP_003535784.1|	-	6.6e-06	25.4	0.1	1.2e-05	24.6	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DivIC	PF04977.10	gi|292655887|ref|YP_003535784.1|	-	0.039	13.4	0.6	0.27	10.7	0.1	2.5	3	0	0	3	3	3	0	Septum	formation	initiator
PilJ	PF13675.1	gi|292655887|ref|YP_003535784.1|	-	0.5	10.6	3.8	3.2	8.1	0.2	3.0	3	0	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
PG_binding_4	PF12229.3	gi|292655890|ref|YP_003535787.1|	-	1.8	8.8	6.1	1.9	8.7	0.3	2.7	1	1	1	2	2	2	0	Putative	peptidoglycan	binding	domain
G3P_acyltransf	PF02660.10	gi|292655891|ref|YP_003535788.1|	-	0.35	10.4	4.2	0.41	10.1	2.9	1.1	1	0	0	1	1	1	0	Glycerol-3-phosphate	acyltransferase
DUF202	PF02656.10	gi|292655891|ref|YP_003535788.1|	-	1.3	9.2	6.5	0.25	11.5	0.7	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Cyt_c_ox_IV	PF12270.3	gi|292655891|ref|YP_003535788.1|	-	2.3	7.9	6.9	0.6	9.8	2.7	1.5	1	1	1	2	2	2	0	Cytochrome	c	oxidase	subunit	IV
Hydrolase	PF00702.21	gi|292655892|ref|YP_003535789.1|	-	7e-55	186.7	10.4	1.2e-54	185.9	7.2	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|292655892|ref|YP_003535789.1|	-	2.5e-50	170.6	0.3	4.5e-50	169.8	0.2	1.4	1	0	0	1	1	1	1	E1-E2	ATPase
HMA	PF00403.21	gi|292655892|ref|YP_003535789.1|	-	9.7e-29	99.3	0.1	8.9e-15	54.5	0.0	3.2	3	0	0	3	3	3	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|292655892|ref|YP_003535789.1|	-	1.2e-20	74.4	0.3	2.7e-20	73.3	0.2	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|292655892|ref|YP_003535789.1|	-	6.9e-07	29.0	0.9	0.0008	19.0	0.4	2.5	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|292655892|ref|YP_003535789.1|	-	0.00036	20.3	2.5	0.0015	18.4	0.0	3.3	4	1	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HTH_AsnC-type	PF13404.1	gi|292655893|ref|YP_003535790.1|	-	1.9e-16	59.2	1.1	5e-16	57.9	0.8	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292655893|ref|YP_003535790.1|	-	4e-16	58.1	0.0	1e-15	56.7	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292655893|ref|YP_003535790.1|	-	2.1e-07	30.4	0.1	5.6e-07	29.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|292655893|ref|YP_003535790.1|	-	9.2e-07	28.4	0.5	2e-06	27.3	0.2	1.7	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|292655893|ref|YP_003535790.1|	-	1.4e-05	24.6	0.0	2.5e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292655893|ref|YP_003535790.1|	-	4.5e-05	22.9	0.0	0.00011	21.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292655893|ref|YP_003535790.1|	-	5.5e-05	22.8	0.4	0.00012	21.8	0.1	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.5	gi|292655893|ref|YP_003535790.1|	-	0.00035	20.6	1.4	0.00057	19.9	1.0	1.4	1	0	0	1	1	1	1	Archaeal	TRASH	domain
YHS	PF04945.8	gi|292655893|ref|YP_003535790.1|	-	0.0017	18.1	0.9	0.0036	17.1	0.6	1.5	1	0	0	1	1	1	1	YHS	domain
HTH_27	PF13463.1	gi|292655893|ref|YP_003535790.1|	-	0.0027	17.9	0.1	0.014	15.6	0.0	2.2	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|292655893|ref|YP_003535790.1|	-	0.0036	16.4	0.0	0.0066	15.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
LIM	PF00412.17	gi|292655893|ref|YP_003535790.1|	-	0.022	14.8	0.6	0.034	14.1	0.4	1.3	1	0	0	1	1	1	0	LIM	domain
HTH_28	PF13518.1	gi|292655893|ref|YP_003535790.1|	-	0.024	14.6	0.0	0.051	13.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292655893|ref|YP_003535790.1|	-	0.031	13.9	0.0	0.063	12.9	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|292655893|ref|YP_003535790.1|	-	0.034	14.1	0.0	0.064	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
zf-FCS	PF06467.9	gi|292655893|ref|YP_003535790.1|	-	0.053	13.1	3.6	0.081	12.5	2.5	1.3	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_23	PF13384.1	gi|292655893|ref|YP_003535790.1|	-	0.06	13.0	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_1	PF00126.22	gi|292655893|ref|YP_003535790.1|	-	0.07	12.8	0.0	0.17	11.6	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
ATPase-cat_bd	PF12156.3	gi|292655893|ref|YP_003535790.1|	-	0.36	11.3	2.3	0.61	10.6	1.6	1.3	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HMA	PF00403.21	gi|292655894|ref|YP_003535791.1|	-	8.6e-18	64.2	0.3	9.5e-18	64.1	0.2	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF1275	PF06912.6	gi|292655895|ref|YP_003535792.1|	-	0.045	12.9	1.7	0.05	12.7	1.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
Nucleos_tra2_N	PF01773.15	gi|292655895|ref|YP_003535792.1|	-	0.092	13.1	3.4	0.14	12.5	2.2	1.5	1	1	0	1	1	1	0	Na+	dependent	nucleoside	transporter	N-terminus
Tmemb_14	PF03647.8	gi|292655895|ref|YP_003535792.1|	-	0.1	13.0	0.3	0.1	13.0	0.2	1.0	1	0	0	1	1	1	0	Transmembrane	proteins	14C
DUF2398	PF09661.5	gi|292655895|ref|YP_003535792.1|	-	0.11	11.2	0.2	0.12	11.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2398)
DUF1212	PF06738.7	gi|292655895|ref|YP_003535792.1|	-	0.17	11.3	1.2	0.16	11.3	0.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1212)
DUF3382	PF11862.3	gi|292655895|ref|YP_003535792.1|	-	0.19	11.6	1.7	0.26	11.2	1.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3382)
Gram_pos_anchor	PF00746.16	gi|292655895|ref|YP_003535792.1|	-	6.9	6.6	6.3	15	5.5	1.4	2.1	2	0	0	2	2	2	0	Gram	positive	anchor
RIG-I_C-RD	PF11648.3	gi|292655896|ref|YP_003535793.1|	-	0.019	14.8	0.0	0.037	13.8	0.0	1.5	1	1	0	1	1	1	0	C-terminal	domain	of	RIG-I
zf-CSL	PF05207.8	gi|292655896|ref|YP_003535793.1|	-	0.051	13.0	0.4	0.18	11.3	0.3	1.9	1	1	1	2	2	2	0	CSL	zinc	finger
MerB	PF03243.10	gi|292655896|ref|YP_003535793.1|	-	0.12	12.2	0.2	0.16	11.7	0.1	1.3	1	0	0	1	1	1	0	Alkylmercury	lyase
zinc_ribbon_5	PF13719.1	gi|292655896|ref|YP_003535793.1|	-	0.16	11.5	1.0	0.63	9.6	0.0	2.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Acetyltransf_3	PF13302.1	gi|292655897|ref|YP_003535794.1|	-	3.8e-13	49.8	0.0	4.7e-13	49.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292655897|ref|YP_003535794.1|	-	6.4e-13	48.5	0.1	1.2e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|292655897|ref|YP_003535794.1|	-	1.4e-07	31.1	0.0	2.4e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|292655897|ref|YP_003535794.1|	-	1.8e-07	31.2	0.0	2.3e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292655897|ref|YP_003535794.1|	-	3.2e-06	27.0	0.0	0.031	14.1	0.0	2.2	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|292655897|ref|YP_003535794.1|	-	3.4e-06	27.0	0.0	4.2e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292655897|ref|YP_003535794.1|	-	0.00028	20.9	0.0	0.00041	20.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292655897|ref|YP_003535794.1|	-	0.012	15.5	0.3	0.023	14.5	0.0	1.6	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Fer4_15	PF13459.1	gi|292655897|ref|YP_003535794.1|	-	0.021	15.3	0.2	0.072	13.6	0.0	2.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Acetyltransf_CG	PF14542.1	gi|292655897|ref|YP_003535794.1|	-	0.042	13.7	0.1	0.071	13.0	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
SAP18	PF06487.7	gi|292655897|ref|YP_003535794.1|	-	0.17	11.6	0.0	0.3	10.8	0.0	1.5	1	1	0	1	1	1	0	Sin3	associated	polypeptide	p18	(SAP18)
DoxX	PF07681.7	gi|292655898|ref|YP_003535795.1|	-	2.6e-07	30.9	10.9	2.6e-07	30.9	7.5	1.7	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.8	gi|292655898|ref|YP_003535795.1|	-	0.0028	17.3	3.4	0.0056	16.3	2.4	1.5	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
DAO	PF01266.19	gi|292655899|ref|YP_003535796.1|	-	4.2e-10	39.0	4.8	2.4e-06	26.7	0.4	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292655899|ref|YP_003535796.1|	-	5.3e-07	29.7	0.0	1e-06	28.7	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|292655899|ref|YP_003535796.1|	-	3.9e-06	26.2	2.2	3.9e-06	26.2	1.5	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|292655899|ref|YP_003535796.1|	-	6.5e-06	26.0	1.8	1.1e-05	25.3	0.3	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.17	gi|292655899|ref|YP_003535796.1|	-	2.5e-05	23.3	0.2	4.2e-05	22.5	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|292655899|ref|YP_003535796.1|	-	5e-05	22.5	2.7	0.00011	21.3	0.2	2.2	1	1	1	2	2	2	1	FAD	binding	domain
FAD_binding_2	PF00890.19	gi|292655899|ref|YP_003535796.1|	-	5.3e-05	22.2	0.6	5.3e-05	22.2	0.5	2.3	2	1	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|292655899|ref|YP_003535796.1|	-	8.4e-05	21.2	0.4	0.00021	19.8	0.1	1.7	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|292655899|ref|YP_003535796.1|	-	0.00049	19.2	0.1	0.00084	18.5	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|292655899|ref|YP_003535796.1|	-	0.00064	19.8	1.3	0.0069	16.4	0.9	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292655899|ref|YP_003535796.1|	-	0.00065	20.0	0.2	0.0019	18.5	0.1	1.8	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|292655899|ref|YP_003535796.1|	-	0.022	14.4	0.0	0.04	13.5	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.7	gi|292655899|ref|YP_003535796.1|	-	0.034	13.0	1.6	0.13	11.1	0.1	2.3	2	1	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|292655899|ref|YP_003535796.1|	-	0.068	12.9	3.3	1.7	8.4	0.2	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FecCD	PF01032.13	gi|292655900|ref|YP_003535797.1|	-	2.4e-89	299.2	36.2	3.1e-89	298.8	25.1	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC_tran	PF00005.22	gi|292655901|ref|YP_003535798.1|	-	1e-30	106.7	0.0	1.7e-30	106.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292655901|ref|YP_003535798.1|	-	9.8e-12	45.4	0.5	4.1e-06	26.9	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292655901|ref|YP_003535798.1|	-	2e-10	40.2	0.2	0.00019	20.7	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|292655901|ref|YP_003535798.1|	-	2.5e-07	29.6	0.1	0.0047	15.5	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.1	gi|292655901|ref|YP_003535798.1|	-	1.6e-06	27.5	0.0	3.5e-06	26.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|292655901|ref|YP_003535798.1|	-	1.9e-06	27.4	0.5	1.6e-05	24.4	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292655901|ref|YP_003535798.1|	-	6.9e-06	26.2	1.1	7.3e-05	22.9	0.8	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292655901|ref|YP_003535798.1|	-	2.3e-05	25.1	0.0	4.2e-05	24.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292655901|ref|YP_003535798.1|	-	2.8e-05	24.1	3.4	0.0002	21.4	2.4	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|292655901|ref|YP_003535798.1|	-	7.6e-05	22.6	0.0	0.00037	20.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|292655901|ref|YP_003535798.1|	-	8.9e-05	21.7	0.0	0.016	14.2	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|292655901|ref|YP_003535798.1|	-	0.00013	22.3	0.1	0.0003	21.1	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292655901|ref|YP_003535798.1|	-	0.00028	20.7	0.0	0.00072	19.4	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
HD	PF01966.17	gi|292655901|ref|YP_003535798.1|	-	0.00031	20.7	0.0	0.00073	19.5	0.0	1.5	1	0	0	1	1	1	1	HD	domain
Mg_chelatase	PF01078.16	gi|292655901|ref|YP_003535798.1|	-	0.00052	19.2	0.0	0.42	9.7	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.9	gi|292655901|ref|YP_003535798.1|	-	0.00079	19.1	0.1	0.0023	17.6	0.0	1.8	2	0	0	2	2	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|292655901|ref|YP_003535798.1|	-	0.00087	19.0	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_18	PF13238.1	gi|292655901|ref|YP_003535798.1|	-	0.001	19.3	0.0	0.0018	18.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|292655901|ref|YP_003535798.1|	-	0.0012	18.5	0.0	0.0037	16.9	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
DUF258	PF03193.11	gi|292655901|ref|YP_003535798.1|	-	0.0016	17.6	0.2	0.0021	17.2	0.2	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|292655901|ref|YP_003535798.1|	-	0.0026	17.2	0.2	0.0074	15.7	0.0	1.7	2	0	0	2	2	2	1	AAA-like	domain
RNA_helicase	PF00910.17	gi|292655901|ref|YP_003535798.1|	-	0.0038	17.3	0.0	0.0069	16.5	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
AAA_5	PF07728.9	gi|292655901|ref|YP_003535798.1|	-	0.0061	16.2	0.0	0.017	14.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|292655901|ref|YP_003535798.1|	-	0.0064	16.7	0.0	0.012	15.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.18	gi|292655901|ref|YP_003535798.1|	-	0.015	15.2	0.1	0.049	13.5	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
APS_kinase	PF01583.15	gi|292655901|ref|YP_003535798.1|	-	0.016	14.8	0.1	0.19	11.3	0.0	2.1	2	0	0	2	2	2	0	Adenylylsulphate	kinase
SRP54	PF00448.17	gi|292655901|ref|YP_003535798.1|	-	0.021	14.2	0.0	0.039	13.3	0.0	1.6	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.14	gi|292655901|ref|YP_003535798.1|	-	0.026	13.9	0.1	0.087	12.2	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATP_bind_1	PF03029.12	gi|292655901|ref|YP_003535798.1|	-	0.027	14.0	0.3	0.51	9.8	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.1	gi|292655901|ref|YP_003535798.1|	-	0.027	14.4	0.1	0.086	12.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|292655901|ref|YP_003535798.1|	-	0.042	13.4	0.0	0.1	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|292655901|ref|YP_003535798.1|	-	0.042	13.4	0.0	0.088	12.4	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Rad17	PF03215.10	gi|292655901|ref|YP_003535798.1|	-	0.05	12.2	0.0	0.069	11.8	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
SbcCD_C	PF13558.1	gi|292655901|ref|YP_003535798.1|	-	0.061	13.2	0.0	0.67	9.9	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Zeta_toxin	PF06414.7	gi|292655901|ref|YP_003535798.1|	-	0.099	11.7	0.2	0.22	10.5	0.0	1.6	2	0	0	2	2	1	0	Zeta	toxin
ATP-synt_ab	PF00006.20	gi|292655901|ref|YP_003535798.1|	-	0.12	11.8	0.0	0.27	10.6	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Miro	PF08477.8	gi|292655901|ref|YP_003535798.1|	-	0.12	12.8	0.1	0.33	11.4	0.0	1.7	2	0	0	2	2	1	0	Miro-like	protein
RecA	PF00154.16	gi|292655901|ref|YP_003535798.1|	-	0.14	11.1	0.0	0.24	10.4	0.0	1.3	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_24	PF13479.1	gi|292655901|ref|YP_003535798.1|	-	0.15	11.6	0.6	0.24	10.9	0.1	1.5	2	0	0	2	2	1	0	AAA	domain
FKBP_C	PF00254.23	gi|292655902|ref|YP_003535799.1|	-	7.5e-26	89.9	0.1	1.3e-25	89.2	0.1	1.3	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
YajC	PF02699.10	gi|292655902|ref|YP_003535799.1|	-	0.0055	16.3	0.1	0.012	15.2	0.1	1.5	1	0	0	1	1	1	1	Preprotein	translocase	subunit
TOBE	PF03459.12	gi|292655902|ref|YP_003535799.1|	-	0.25	11.4	1.9	0.53	10.4	0.3	2.1	2	0	0	2	2	2	0	TOBE	domain
Fer2	PF00111.22	gi|292655903|ref|YP_003535800.1|	-	2.9e-13	49.3	0.1	5.8e-13	48.3	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DnaJ	PF00226.26	gi|292655903|ref|YP_003535800.1|	-	2.6e-10	39.8	0.0	4.2e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.1	gi|292655903|ref|YP_003535800.1|	-	0.008	15.5	0.0	0.014	14.8	0.0	1.4	1	0	0	1	1	1	1	A	repeated	domain	in	UCH-protein
UPF0104	PF03706.8	gi|292655904|ref|YP_003535801.1|	-	1.8e-17	63.5	36.1	2.4e-17	63.1	25.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
HTH_5	PF01022.15	gi|292655907|ref|YP_003535804.1|	-	3.5e-10	39.3	0.4	5.6e-10	38.7	0.1	1.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292655907|ref|YP_003535804.1|	-	1.3e-07	31.3	0.2	2.2e-07	30.5	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292655907|ref|YP_003535804.1|	-	9.2e-06	24.9	0.8	1.2e-05	24.5	0.2	1.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|292655907|ref|YP_003535804.1|	-	0.00044	20.0	0.1	0.0005	19.8	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|292655907|ref|YP_003535804.1|	-	0.024	14.3	0.0	0.037	13.7	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|292655907|ref|YP_003535804.1|	-	0.04	14.0	0.0	0.046	13.8	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_23	PF13384.1	gi|292655907|ref|YP_003535804.1|	-	0.1	12.3	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.7	gi|292655907|ref|YP_003535804.1|	-	0.11	12.2	0.1	0.18	11.4	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
HxlR	PF01638.12	gi|292655907|ref|YP_003535804.1|	-	0.11	12.1	0.1	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
BPD_transp_1	PF00528.17	gi|292655908|ref|YP_003535805.1|	-	1.1e-39	135.8	10.9	1.5e-39	135.4	7.6	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
oligo_HPY	PF08352.7	gi|292655909|ref|YP_003535806.1|	-	1.2e-20	73.6	0.2	2.2e-20	72.7	0.2	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
ABC_tran	PF00005.22	gi|292655909|ref|YP_003535806.1|	-	1.1e-09	38.6	0.0	1.8e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OppC_N	PF12911.2	gi|292655909|ref|YP_003535806.1|	-	3.9e-09	35.7	0.0	6.6e-09	35.0	0.0	1.4	1	0	0	1	1	1	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
AAA_21	PF13304.1	gi|292655909|ref|YP_003535806.1|	-	1.3e-05	25.3	0.0	1.8e-05	24.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|292655909|ref|YP_003535806.1|	-	0.25	10.3	0.0	0.35	9.8	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|292655910|ref|YP_003535807.1|	-	1.4e-33	116.0	0.0	2.1e-33	115.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292655910|ref|YP_003535807.1|	-	1.8e-15	57.0	0.1	3.3e-15	56.1	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292655910|ref|YP_003535807.1|	-	1.8e-11	44.5	0.1	2.1e-08	34.5	0.0	2.3	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292655910|ref|YP_003535807.1|	-	4.2e-06	26.1	0.1	1.5e-05	24.3	0.1	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|292655910|ref|YP_003535807.1|	-	0.0064	16.3	0.0	0.12	12.3	0.0	2.6	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.1	gi|292655910|ref|YP_003535807.1|	-	0.0097	15.3	0.1	0.06	12.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292655910|ref|YP_003535807.1|	-	0.011	15.9	0.2	0.042	13.9	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|292655910|ref|YP_003535807.1|	-	0.016	14.7	0.3	0.028	13.9	0.2	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|292655910|ref|YP_003535807.1|	-	0.028	13.8	0.0	5.5	6.3	0.0	2.2	2	0	0	2	2	2	0	AAA-like	domain
AAA_5	PF07728.9	gi|292655910|ref|YP_003535807.1|	-	0.032	13.9	0.0	0.84	9.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_15	PF13175.1	gi|292655910|ref|YP_003535807.1|	-	0.048	12.6	0.1	0.18	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_13	PF13166.1	gi|292655910|ref|YP_003535807.1|	-	0.049	12.0	0.3	0.17	10.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Glyco_hydro_65N	PF03636.10	gi|292655910|ref|YP_003535807.1|	-	0.13	11.5	0.0	0.22	10.7	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	N-terminal	domain
AAA_16	PF13191.1	gi|292655910|ref|YP_003535807.1|	-	0.15	12.0	0.3	0.29	11.1	0.2	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF258	PF03193.11	gi|292655910|ref|YP_003535807.1|	-	0.23	10.6	1.1	3.3	6.8	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
DUF917	PF06032.7	gi|292655912|ref|YP_003535809.1|	-	3e-69	233.2	5.5	3.5e-69	233.0	3.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF917)
DUF1177	PF06675.6	gi|292655913|ref|YP_003535810.1|	-	5.4e-53	179.3	0.1	1.1e-30	106.1	0.1	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1177)
AroM	PF07302.6	gi|292655914|ref|YP_003535811.1|	-	2.8e-59	200.1	0.0	3.1e-59	199.9	0.0	1.0	1	0	0	1	1	1	1	AroM	protein
Peptidase_M29	PF02073.10	gi|292655915|ref|YP_003535812.1|	-	1.4e-17	63.5	0.0	5.2e-16	58.4	0.0	2.0	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
Nitroreductase	PF00881.19	gi|292655916|ref|YP_003535813.1|	-	1.1e-23	83.8	0.0	1.9e-23	83.0	0.0	1.4	1	0	0	1	1	1	1	Nitroreductase	family
Asp_Glu_race	PF01177.17	gi|292655917|ref|YP_003535814.1|	-	3.1e-14	53.4	2.4	4e-14	53.0	1.6	1.1	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
Se-cys_synth_N	PF12390.3	gi|292655917|ref|YP_003535814.1|	-	1.2	9.3	3.8	27	4.9	0.2	3.3	3	1	0	3	3	3	0	Selenocysteine	synthase	N	terminal
peroxidase	PF00141.18	gi|292655918|ref|YP_003535815.1|	-	8.7e-88	293.6	0.0	1.9e-48	164.9	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
MCPsignal	PF00015.16	gi|292655919|ref|YP_003535816.1|	-	1.6e-37	129.1	52.9	1e-36	126.5	21.8	3.1	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.6	gi|292655919|ref|YP_003535816.1|	-	0.00025	20.8	24.9	0.027	14.3	0.7	5.4	4	1	1	5	5	5	2	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_I	PF06008.9	gi|292655919|ref|YP_003535816.1|	-	0.00082	18.7	6.8	0.00082	18.7	4.7	4.6	3	1	1	4	4	4	1	Laminin	Domain	I
Laminin_II	PF06009.7	gi|292655919|ref|YP_003535816.1|	-	0.0016	18.2	31.2	0.014	15.1	0.8	5.1	3	2	1	4	4	4	2	Laminin	Domain	II
BLOC1_2	PF10046.4	gi|292655919|ref|YP_003535816.1|	-	0.0076	16.3	18.3	0.17	12.0	0.2	5.0	4	1	2	6	6	6	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_13	PF13166.1	gi|292655919|ref|YP_003535816.1|	-	0.0085	14.6	22.0	0.05	12.0	4.1	2.4	1	1	0	2	2	2	2	AAA	domain
TPR_MLP1_2	PF07926.7	gi|292655919|ref|YP_003535816.1|	-	0.012	15.3	22.0	0.099	12.3	0.0	4.9	2	1	2	4	4	4	0	TPR/MLP1/MLP2-like	protein
Spectrin	PF00435.16	gi|292655919|ref|YP_003535816.1|	-	0.015	15.5	0.5	0.015	15.5	0.3	5.0	1	1	5	6	6	6	0	Spectrin	repeat
LXG	PF04740.7	gi|292655919|ref|YP_003535816.1|	-	0.018	14.8	1.5	0.018	14.8	1.1	4.4	1	1	2	4	4	4	0	LXG	domain	of	WXG	superfamily
NPV_P10	PF05531.7	gi|292655919|ref|YP_003535816.1|	-	0.025	14.8	27.1	0.15	12.3	1.7	6.3	3	2	3	6	6	6	0	Nucleopolyhedrovirus	P10	protein
Bacillus_HBL	PF05791.6	gi|292655919|ref|YP_003535816.1|	-	0.025	13.9	0.4	0.025	13.9	0.3	4.1	3	2	1	5	5	5	0	Bacillus	haemolytic	enterotoxin	(HBL)
Mod_r	PF07200.8	gi|292655919|ref|YP_003535816.1|	-	0.044	13.7	14.8	0.24	11.2	0.1	4.8	3	1	2	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
CENP-F_leu_zip	PF10473.4	gi|292655919|ref|YP_003535816.1|	-	0.18	11.6	24.8	1.4	8.7	0.0	4.8	4	1	0	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Mto2_bdg	PF12808.2	gi|292655919|ref|YP_003535816.1|	-	0.25	11.4	0.1	0.25	11.4	0.1	2.7	3	0	0	3	3	2	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
DUF1664	PF07889.7	gi|292655919|ref|YP_003535816.1|	-	0.32	10.7	23.7	0.17	11.6	0.3	5.3	3	2	3	6	6	6	0	Protein	of	unknown	function	(DUF1664)
WEMBL	PF05701.6	gi|292655919|ref|YP_003535816.1|	-	0.51	8.7	36.0	0.77	8.1	25.0	1.2	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
Reo_sigmaC	PF04582.7	gi|292655919|ref|YP_003535816.1|	-	1	8.4	29.8	0.19	10.8	7.9	3.0	1	1	2	3	3	3	0	Reovirus	sigma	C	capsid	protein
Myosin_tail_1	PF01576.14	gi|292655919|ref|YP_003535816.1|	-	1.5	6.4	29.3	1.2	6.7	5.0	3.0	1	1	1	2	2	2	0	Myosin	tail
Spc7	PF08317.6	gi|292655919|ref|YP_003535816.1|	-	2.2	6.8	23.3	0.091	11.4	1.2	3.8	1	1	4	5	5	5	0	Spc7	kinetochore	protein
Prominin	PF05478.6	gi|292655919|ref|YP_003535816.1|	-	2.9	5.3	18.3	0.37	8.2	1.5	3.8	2	1	1	3	3	3	0	Prominin
Ran-binding	PF05508.6	gi|292655919|ref|YP_003535816.1|	-	2.9	6.6	9.1	0.73	8.6	3.5	2.0	1	1	0	2	2	2	0	RanGTP-binding	protein
IFT57	PF10498.4	gi|292655919|ref|YP_003535816.1|	-	3.6	6.2	19.5	1.7	7.3	4.3	3.5	1	1	3	4	4	4	0	Intra-flagellar	transport	protein	57
ADIP	PF11559.3	gi|292655919|ref|YP_003535816.1|	-	4.2	7.2	20.0	5.5	6.8	0.5	4.7	3	1	1	5	5	5	0	Afadin-	and	alpha	-actinin-Binding
TBPIP	PF07106.8	gi|292655920|ref|YP_003535817.1|	-	0.00037	20.0	1.0	0.00069	19.2	0.7	1.4	1	1	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Mnd1	PF03962.10	gi|292655920|ref|YP_003535817.1|	-	0.0049	16.5	1.3	0.0072	16.0	0.9	1.2	1	0	0	1	1	1	1	Mnd1	family
GvpK	PF05121.7	gi|292655920|ref|YP_003535817.1|	-	0.0062	16.3	0.3	2.8	7.8	0.0	2.3	1	1	1	2	2	2	2	Gas	vesicle	protein	K
Lebercilin	PF15619.1	gi|292655920|ref|YP_003535817.1|	-	0.012	15.0	0.8	0.95	8.8	0.2	2.0	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
TrmB	PF01978.14	gi|292655920|ref|YP_003535817.1|	-	0.012	15.2	0.0	0.031	13.9	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|292655920|ref|YP_003535817.1|	-	0.02	14.6	0.0	0.032	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
Cep57_MT_bd	PF06657.8	gi|292655920|ref|YP_003535817.1|	-	0.036	14.0	1.4	0.39	10.6	0.0	2.5	2	1	1	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
RepL	PF05732.6	gi|292655920|ref|YP_003535817.1|	-	0.04	13.1	0.0	0.099	11.8	0.0	1.6	1	1	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
Orthopox_F7	PF05813.7	gi|292655920|ref|YP_003535817.1|	-	0.13	12.2	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Orthopoxvirus	F7	protein
HTH_24	PF13412.1	gi|292655920|ref|YP_003535817.1|	-	0.13	11.6	0.0	0.33	10.3	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FUSC	PF04632.7	gi|292655920|ref|YP_003535817.1|	-	0.67	8.3	4.2	0.84	7.9	2.9	1.3	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF2228	PF10228.4	gi|292655921|ref|YP_003535818.1|	-	0.16	11.4	0.2	0.23	11.0	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2228)
Peptidase_M20	PF01546.23	gi|292655923|ref|YP_003535820.1|	-	9.1e-28	97.0	0.4	1.1e-27	96.7	0.3	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292655923|ref|YP_003535820.1|	-	1.6e-05	24.5	0.0	3.5e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
NIR_SIR	PF01077.17	gi|292655928|ref|YP_003535825.1|	-	6.9e-46	155.4	0.0	5e-32	110.4	0.0	2.5	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|292655928|ref|YP_003535825.1|	-	2.7e-38	129.4	0.2	5.2e-18	64.4	0.1	3.4	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
WPP	PF13943.1	gi|292655929|ref|YP_003535826.1|	-	0.033	14.3	0.4	0.84	9.8	0.0	2.0	2	0	0	2	2	2	0	WPP	domain
EamA	PF00892.15	gi|292655930|ref|YP_003535827.1|	-	1.2e-27	96.4	28.0	1.7e-14	53.9	6.8	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|292655930|ref|YP_003535827.1|	-	0.0024	18.0	8.4	0.0024	18.0	5.8	4.1	1	1	2	4	4	4	3	Multidrug	resistance	efflux	transporter
UPF0060	PF02694.10	gi|292655930|ref|YP_003535827.1|	-	0.041	13.9	7.9	0.022	14.7	3.1	2.3	1	1	0	2	2	2	0	Uncharacterised	BCR,	YnfA/UPF0060	family
TPT	PF03151.11	gi|292655930|ref|YP_003535827.1|	-	0.25	10.9	20.8	0.083	12.5	1.8	3.3	2	2	1	3	3	3	0	Triose-phosphate	Transporter	family
DUF1459	PF07312.6	gi|292655930|ref|YP_003535827.1|	-	1.2	9.1	8.8	0.18	11.7	2.2	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1459)
EamA	PF00892.15	gi|292655931|ref|YP_003535828.1|	-	1.2e-33	115.7	26.2	1.8e-17	63.5	5.1	2.5	2	1	1	3	3	3	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|292655931|ref|YP_003535828.1|	-	7.6e-06	26.1	3.5	7.6e-06	26.1	2.4	3.5	2	1	2	4	4	4	2	Multidrug	resistance	efflux	transporter
Nuc_sug_transp	PF04142.10	gi|292655931|ref|YP_003535828.1|	-	0.038	13.1	1.0	0.097	11.7	0.0	1.9	2	0	0	2	2	2	0	Nucleotide-sugar	transporter
TPT	PF03151.11	gi|292655931|ref|YP_003535828.1|	-	0.053	13.1	18.1	0.023	14.3	4.2	2.6	2	2	0	2	2	2	0	Triose-phosphate	Transporter	family
DUF2964	PF11177.3	gi|292655931|ref|YP_003535828.1|	-	2.3	8.2	10.3	3.8	7.5	0.8	4.1	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF2964)
AsnC_trans_reg	PF01037.16	gi|292655932|ref|YP_003535829.1|	-	1.2e-11	44.1	0.3	2e-11	43.4	0.2	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|292655932|ref|YP_003535829.1|	-	1.2e-07	31.0	0.0	2e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|292655932|ref|YP_003535829.1|	-	0.0006	19.3	0.0	0.0011	18.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292655932|ref|YP_003535829.1|	-	0.0015	18.3	0.0	0.0038	16.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
GYD	PF08734.6	gi|292655932|ref|YP_003535829.1|	-	0.0026	17.4	0.0	0.0039	16.8	0.0	1.4	1	0	0	1	1	1	1	GYD	domain
TrmB	PF01978.14	gi|292655932|ref|YP_003535829.1|	-	0.0035	17.0	0.0	0.0065	16.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292655932|ref|YP_003535829.1|	-	0.042	13.5	0.0	0.068	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|292655932|ref|YP_003535829.1|	-	0.057	13.7	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|292655932|ref|YP_003535829.1|	-	0.087	12.5	0.0	0.46	10.1	0.0	2.0	2	0	0	2	2	2	0	MarR	family
PAS_3	PF08447.6	gi|292655933|ref|YP_003535830.1|	-	1.6e-10	40.9	0.1	1.8e-09	37.5	0.1	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|292655933|ref|YP_003535830.1|	-	1.2e-09	38.5	0.4	1.9e-06	28.1	0.0	3.1	3	0	0	3	3	3	2	PAS	domain
HATPase_c	PF02518.21	gi|292655933|ref|YP_003535830.1|	-	2.4e-05	23.9	1.5	0.00011	21.9	1.1	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292655933|ref|YP_003535830.1|	-	4.7e-05	23.3	0.4	4.7e-05	23.3	0.3	2.3	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|292655933|ref|YP_003535830.1|	-	0.00048	20.1	4.3	0.0017	18.3	0.7	2.9	2	1	1	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.1	gi|292655933|ref|YP_003535830.1|	-	0.023	14.3	0.1	0.047	13.3	0.1	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292655933|ref|YP_003535830.1|	-	1.9	8.2	7.1	0.43	10.3	0.7	2.7	2	2	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|292655934|ref|YP_003535831.1|	-	2.5e-06	27.1	0.1	4.4e-06	26.3	0.1	1.3	1	0	0	1	1	1	1	PAS	domain
SHOCT	PF09851.4	gi|292655935|ref|YP_003535832.1|	-	1.7e-08	33.6	2.8	2.5e-08	33.1	2.0	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|292655935|ref|YP_003535832.1|	-	9.2e-05	22.1	3.7	0.00019	21.0	2.6	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.7	gi|292655935|ref|YP_003535832.1|	-	0.0011	18.6	0.1	0.0018	18.0	0.1	1.3	1	0	0	1	1	1	1	Gas	vesicle	protein	G
Beta-Casp	PF10996.3	gi|292655937|ref|YP_003535834.1|	-	2e-20	73.0	0.0	3.9e-20	72.0	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|292655937|ref|YP_003535834.1|	-	5.8e-14	52.1	4.6	5.8e-14	52.1	3.2	2.3	3	0	0	3	3	3	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|292655937|ref|YP_003535834.1|	-	6.3e-10	38.7	1.0	2.4e-09	36.8	0.0	2.4	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|292655937|ref|YP_003535834.1|	-	2.5e-08	33.7	0.8	5.6e-08	32.5	0.6	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292655937|ref|YP_003535834.1|	-	0.055	13.1	1.4	0.45	10.1	1.0	2.3	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Rhodanese	PF00581.15	gi|292655937|ref|YP_003535834.1|	-	0.091	13.1	0.0	0.28	11.5	0.0	1.8	2	0	0	2	2	2	0	Rhodanese-like	domain
Flexi_CP_N	PF08358.5	gi|292655937|ref|YP_003535834.1|	-	0.12	12.1	0.0	0.29	10.9	0.0	1.6	1	0	0	1	1	1	0	Carlavirus	coat
AAA_27	PF13514.1	gi|292655938|ref|YP_003535835.1|	-	0.02	12.6	1.8	0.023	12.4	1.3	1.0	1	0	0	1	1	1	0	AAA	domain
TPR_16	PF13432.1	gi|292655938|ref|YP_003535835.1|	-	0.33	11.6	5.2	1.9	9.2	0.4	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_4	PF07721.9	gi|292655938|ref|YP_003535835.1|	-	0.96	10.0	8.9	1.2	9.7	1.8	2.9	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DAO	PF01266.19	gi|292655939|ref|YP_003535836.1|	-	3.4e-12	45.9	0.0	1.3e-06	27.5	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292655939|ref|YP_003535836.1|	-	2.5e-09	36.5	0.0	4.8e-07	29.0	0.0	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|292655939|ref|YP_003535836.1|	-	8.5e-08	31.6	0.0	7.6e-06	25.2	0.0	2.4	1	1	0	1	1	1	1	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|292655939|ref|YP_003535836.1|	-	1.2e-07	30.7	0.0	0.00046	18.9	0.0	2.7	2	1	1	3	3	3	2	Tryptophan	halogenase
FAD_oxidored	PF12831.2	gi|292655939|ref|YP_003535836.1|	-	5.3e-07	29.0	0.4	1.7e-06	27.4	0.2	1.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292655939|ref|YP_003535836.1|	-	2e-06	27.8	0.0	5.4e-06	26.4	0.0	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292655939|ref|YP_003535836.1|	-	2.6e-05	23.2	0.1	0.00024	20.0	0.1	2.0	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|292655939|ref|YP_003535836.1|	-	4.9e-05	22.3	0.0	0.0005	19.0	0.0	2.2	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|292655939|ref|YP_003535836.1|	-	5.3e-05	22.4	0.0	0.00048	19.3	0.0	2.1	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.9	gi|292655939|ref|YP_003535836.1|	-	6.5e-05	21.5	0.0	0.0075	14.7	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|292655939|ref|YP_003535836.1|	-	0.0057	16.6	0.0	0.018	15.0	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GMC_oxred_N	PF00732.14	gi|292655939|ref|YP_003535836.1|	-	0.025	13.7	0.0	1.5	7.9	0.0	2.3	2	0	0	2	2	2	0	GMC	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292655939|ref|YP_003535836.1|	-	0.064	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Reprolysin_3	PF13582.1	gi|292655942|ref|YP_003535839.1|	-	8.1e-06	26.3	0.0	2.4e-05	24.8	0.0	1.8	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.19	gi|292655942|ref|YP_003535839.1|	-	1.2e-05	25.0	0.0	0.00025	20.7	0.0	2.2	2	0	0	2	2	2	1	Matrixin
Reprolysin_2	PF13574.1	gi|292655942|ref|YP_003535839.1|	-	0.00044	20.3	0.0	0.00069	19.7	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.1	gi|292655942|ref|YP_003535839.1|	-	0.00044	20.2	0.0	0.0009	19.2	0.0	1.5	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Reprolysin_4	PF13583.1	gi|292655942|ref|YP_003535839.1|	-	0.0005	19.6	0.0	0.0008	18.9	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M66	PF10462.4	gi|292655942|ref|YP_003535839.1|	-	0.025	13.4	0.0	0.033	13.0	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M66
Astacin	PF01400.19	gi|292655942|ref|YP_003535839.1|	-	0.03	13.7	0.0	0.047	13.0	0.0	1.2	1	0	0	1	1	1	0	Astacin	(Peptidase	family	M12A)
Peptidase_M54	PF07998.6	gi|292655942|ref|YP_003535839.1|	-	0.041	13.6	0.0	0.061	13.0	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	M54
Herpes_UL32	PF06070.6	gi|292655942|ref|YP_003535839.1|	-	8.3	4.7	6.6	11	4.2	4.6	1.1	1	0	0	1	1	1	0	Herpesvirus	large	structural	phosphoprotein	UL32
AMMECR1	PF01871.12	gi|292655943|ref|YP_003535840.1|	-	1.2e-48	164.5	0.0	1.3e-48	164.3	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
QRPTase_C	PF01729.14	gi|292655944|ref|YP_003535841.1|	-	3.7e-16	59.1	0.0	5.2e-16	58.6	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|292655944|ref|YP_003535841.1|	-	0.00013	21.7	0.0	0.00058	19.6	0.0	2.1	3	0	0	3	3	3	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Adipogenin	PF15202.1	gi|292655945|ref|YP_003535842.1|	-	0.013	15.3	0.2	0.045	13.6	0.0	1.8	2	0	0	2	2	2	0	Adipogenin
Peptidase_MA_2	PF13485.1	gi|292655946|ref|YP_003535843.1|	-	9.5e-09	35.3	1.3	4.1e-08	33.3	0.0	2.6	3	1	0	3	3	3	1	Peptidase	MA	superfamily
DUF955	PF06114.8	gi|292655946|ref|YP_003535843.1|	-	0.0099	15.5	0.0	0.02	14.5	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
DUF4157	PF13699.1	gi|292655946|ref|YP_003535843.1|	-	0.011	15.8	0.0	0.032	14.3	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
Peptidase_M76	PF09768.4	gi|292655946|ref|YP_003535843.1|	-	0.069	12.6	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M76	family
Peptidase_MA_2	PF13485.1	gi|292655948|ref|YP_003535845.1|	-	4.4e-06	26.7	0.2	2.4e-05	24.3	0.0	2.3	2	0	0	2	2	2	1	Peptidase	MA	superfamily
Peptidase_M76	PF09768.4	gi|292655948|ref|YP_003535845.1|	-	0.028	13.8	0.0	0.05	13.0	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M76	family
Isochorismatase	PF00857.15	gi|292655949|ref|YP_003535846.1|	-	4.4e-45	153.7	0.0	5e-45	153.5	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
4HBT	PF03061.17	gi|292655950|ref|YP_003535847.1|	-	7.2e-14	51.6	0.1	1.1e-13	51.0	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.1	gi|292655950|ref|YP_003535847.1|	-	1.1e-08	35.1	0.0	1.4e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
D-ser_dehydrat	PF14031.1	gi|292655950|ref|YP_003535847.1|	-	0.11	12.7	0.0	0.22	11.7	0.0	1.5	1	0	0	1	1	1	0	Putative	serine	dehydratase	domain
PAS_9	PF13426.1	gi|292655951|ref|YP_003535848.1|	-	1.8e-37	127.8	0.8	8e-12	45.4	0.0	3.9	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.19	gi|292655951|ref|YP_003535848.1|	-	4.7e-31	106.8	0.2	1.3e-11	44.2	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.5	gi|292655951|ref|YP_003535848.1|	-	2.4e-29	101.5	15.3	1.3e-12	47.6	0.1	4.3	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|292655951|ref|YP_003535848.1|	-	1.3e-23	82.8	0.0	3.1e-23	81.5	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|292655951|ref|YP_003535848.1|	-	3.3e-23	81.6	0.0	4.7e-12	45.8	0.0	4.0	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.1	gi|292655951|ref|YP_003535848.1|	-	4.3e-14	51.7	0.1	4.8e-06	26.2	0.0	4.0	3	0	0	3	3	3	3	PAS	domain
HisKA	PF00512.20	gi|292655951|ref|YP_003535848.1|	-	3.7e-12	46.0	0.1	2.1e-11	43.6	0.1	2.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.1	gi|292655951|ref|YP_003535848.1|	-	5.2e-09	36.7	3.9	3e-07	31.0	0.2	4.1	3	1	0	4	4	4	1	GAF	domain
PAS_10	PF13596.1	gi|292655951|ref|YP_003535848.1|	-	5.4e-08	33.0	0.0	0.093	13.0	0.0	3.7	3	0	0	3	3	3	2	PAS	domain
PAS_7	PF12860.2	gi|292655951|ref|YP_003535848.1|	-	2.5e-06	27.4	1.4	0.025	14.6	0.0	4.1	3	1	0	3	3	3	2	PAS	fold
PAS_11	PF14598.1	gi|292655951|ref|YP_003535848.1|	-	4.6e-06	26.5	0.0	0.0013	18.6	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292655951|ref|YP_003535848.1|	-	2.5e-05	24.0	0.5	0.0004	20.1	0.0	2.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
GAF_3	PF13492.1	gi|292655951|ref|YP_003535848.1|	-	8.7e-05	22.6	0.5	0.0012	18.9	0.1	2.9	3	0	0	3	3	3	1	GAF	domain
HATPase_c_3	PF13589.1	gi|292655951|ref|YP_003535848.1|	-	0.015	14.9	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PfkB	PF00294.19	gi|292655952|ref|YP_003535849.1|	-	0.048	12.7	0.6	0.37	9.8	0.5	1.9	2	0	0	2	2	2	0	pfkB	family	carbohydrate	kinase
HTH_10	PF04967.7	gi|292655953|ref|YP_003535850.1|	-	0.00029	20.3	0.0	0.00043	19.7	0.0	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|292655953|ref|YP_003535850.1|	-	0.0033	16.7	0.3	0.0059	15.8	0.2	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.7	gi|292655953|ref|YP_003535850.1|	-	0.0096	15.3	0.1	0.015	14.7	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|292655953|ref|YP_003535850.1|	-	0.042	13.5	0.2	0.073	12.7	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.1	gi|292655953|ref|YP_003535850.1|	-	0.16	11.3	0.3	0.73	9.2	0.2	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Peptidase_M23	PF01551.17	gi|292655954|ref|YP_003535851.1|	-	0.039	13.9	0.0	0.28	11.2	0.0	2.3	1	1	0	1	1	1	0	Peptidase	family	M23
BPL_LplA_LipB	PF03099.14	gi|292655955|ref|YP_003535852.1|	-	7e-06	26.0	0.0	9.6e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Amidohydro_4	PF13147.1	gi|292655956|ref|YP_003535853.1|	-	4.7e-31	108.8	22.4	6.3e-31	108.4	15.5	1.2	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|292655956|ref|YP_003535853.1|	-	1e-20	74.7	0.1	2e-20	73.7	0.1	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|292655956|ref|YP_003535853.1|	-	2.4e-14	52.8	0.6	1.3e-13	50.5	0.2	2.3	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|292655956|ref|YP_003535853.1|	-	1.6e-05	24.3	10.2	0.0017	17.6	4.5	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
DHOase	PF12890.2	gi|292655956|ref|YP_003535853.1|	-	0.0015	18.2	0.0	0.0044	16.6	0.0	1.9	1	1	0	1	1	1	1	Dihydro-orotase-like
TatD_DNase	PF01026.16	gi|292655956|ref|YP_003535853.1|	-	0.023	13.8	0.0	0.15	11.2	0.0	2.1	1	1	0	1	1	1	0	TatD	related	DNase
Usp	PF00582.21	gi|292655960|ref|YP_003535857.1|	-	1.4e-16	60.9	0.2	2.5e-16	60.1	0.2	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
DUF4349	PF14257.1	gi|292655960|ref|YP_003535857.1|	-	0.33	10.1	2.3	0.44	9.7	1.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Acetyltransf_1	PF00583.19	gi|292655961|ref|YP_003535858.1|	-	9.5e-18	64.0	0.2	1.4e-17	63.4	0.2	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|292655961|ref|YP_003535858.1|	-	6.8e-09	36.0	0.0	8.5e-09	35.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292655961|ref|YP_003535858.1|	-	4.8e-08	33.0	0.0	7.5e-08	32.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292655961|ref|YP_003535858.1|	-	5.4e-08	32.9	0.0	6.8e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292655961|ref|YP_003535858.1|	-	6e-07	29.3	0.0	2.8e-06	27.1	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292655961|ref|YP_003535858.1|	-	6.7e-05	22.5	0.0	0.00011	21.9	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|292655961|ref|YP_003535858.1|	-	0.00094	19.1	0.0	0.0012	18.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|292655961|ref|YP_003535858.1|	-	0.0038	17.1	0.1	0.0056	16.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Mec-17	PF05301.6	gi|292655961|ref|YP_003535858.1|	-	0.094	12.6	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	Touch	receptor	neuron	protein	Mec-17
Acetyltransf_CG	PF14542.1	gi|292655961|ref|YP_003535858.1|	-	0.1	12.5	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Usp	PF00582.21	gi|292655962|ref|YP_003535859.1|	-	1.1e-13	51.5	8.4	2.9e-13	50.2	5.8	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.21	gi|292655963|ref|YP_003535860.1|	-	4.7e-34	117.5	5.9	5.4e-34	117.3	4.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF1108	PF06531.6	gi|292655963|ref|YP_003535860.1|	-	0.016	15.3	0.0	0.026	14.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1108)
DNA_photolyase	PF00875.13	gi|292655963|ref|YP_003535860.1|	-	0.045	13.4	0.0	0.061	13.0	0.0	1.1	1	0	0	1	1	1	0	DNA	photolyase
Sipho_Gp37	PF14594.1	gi|292655963|ref|YP_003535860.1|	-	0.11	11.7	1.1	0.14	11.3	0.7	1.1	1	0	0	1	1	1	0	Siphovirus	ReqiPepy6	Gp37-like	protein
Glyco_hydro_3_C	PF01915.17	gi|292655963|ref|YP_003535860.1|	-	0.21	11.0	1.2	0.25	10.8	0.9	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	3	C-terminal	domain
DHHA1	PF02272.14	gi|292655964|ref|YP_003535861.1|	-	0.001	18.7	0.0	0.0033	17.0	0.0	1.9	1	0	0	1	1	1	1	DHHA1	domain
PGA_cap	PF09587.5	gi|292655964|ref|YP_003535861.1|	-	0.021	14.2	0.1	0.29	10.4	0.0	2.4	2	0	0	2	2	2	0	Bacterial	capsule	synthesis	protein	PGA_cap
DUF506	PF04720.7	gi|292655964|ref|YP_003535861.1|	-	0.72	9.4	3.7	18	4.8	0.0	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF506)
DUF1840	PF08895.6	gi|292655964|ref|YP_003535861.1|	-	2.2	8.3	7.4	0.61	10.1	0.6	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1840)
DUF4484	PF14831.1	gi|292655964|ref|YP_003535861.1|	-	3.8	7.5	8.7	9.6	6.2	2.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4484)
DUF4611	PF15387.1	gi|292655964|ref|YP_003535861.1|	-	9.7	6.4	16.9	5.5	7.1	4.1	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4611)
Ribosomal_S6e	PF01092.14	gi|292655967|ref|YP_003535864.1|	-	1.4e-36	124.9	0.4	1.5e-36	124.7	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
DZR	PF12773.2	gi|292655968|ref|YP_003535865.1|	-	0.00047	19.9	0.7	0.00071	19.3	0.5	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292655968|ref|YP_003535865.1|	-	0.0005	19.1	2.2	0.00087	18.4	1.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
HypA	PF01155.14	gi|292655968|ref|YP_003535865.1|	-	0.0034	17.0	0.6	0.004	16.8	0.4	1.2	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
OrfB_Zn_ribbon	PF07282.6	gi|292655968|ref|YP_003535865.1|	-	0.0061	16.1	2.0	0.011	15.4	1.4	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|292655968|ref|YP_003535865.1|	-	0.0084	15.7	3.5	1	9.1	0.1	2.3	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
DnaJ_CXXCXGXG	PF00684.14	gi|292655968|ref|YP_003535865.1|	-	0.02	14.9	0.5	0.029	14.3	0.3	1.2	1	0	0	1	1	1	0	DnaJ	central	domain
zf-NADH-PPase	PF09297.6	gi|292655968|ref|YP_003535865.1|	-	0.025	14.0	2.0	0.13	11.8	1.4	2.1	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|292655968|ref|YP_003535865.1|	-	0.028	13.9	2.7	0.83	9.2	0.1	2.7	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-H2C2_2	PF13465.1	gi|292655968|ref|YP_003535865.1|	-	0.029	14.6	2.1	0.18	12.1	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
RNA_POL_M_15KD	PF02150.11	gi|292655968|ref|YP_003535865.1|	-	0.03	14.0	2.0	0.49	10.1	0.2	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
TF_Zn_Ribbon	PF08271.7	gi|292655968|ref|YP_003535865.1|	-	0.035	13.4	3.5	0.53	9.6	0.3	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF1272	PF06906.6	gi|292655968|ref|YP_003535865.1|	-	0.035	13.9	3.3	0.12	12.2	2.3	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-IS66	PF13005.2	gi|292655968|ref|YP_003535865.1|	-	0.05	13.5	0.4	0.05	13.5	0.3	2.6	2	1	1	3	3	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_2	PF13240.1	gi|292655968|ref|YP_003535865.1|	-	0.12	11.9	5.5	0.3	10.6	3.8	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|292655968|ref|YP_003535865.1|	-	0.12	12.1	0.6	0.17	11.6	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
DNA_ligase_ZBD	PF03119.11	gi|292655968|ref|YP_003535865.1|	-	0.12	12.0	3.9	1.4	8.6	0.2	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
GFA	PF04828.9	gi|292655968|ref|YP_003535865.1|	-	0.18	11.7	1.5	1.5	8.8	1.0	2.1	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.5	gi|292655968|ref|YP_003535865.1|	-	0.22	11.5	5.8	10	6.1	0.4	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|292655968|ref|YP_003535865.1|	-	0.25	11.2	5.3	7.2	6.5	3.7	2.2	1	1	0	1	1	1	0	Rubredoxin
Cys_rich_CPCC	PF14206.1	gi|292655968|ref|YP_003535865.1|	-	0.27	10.8	2.3	0.45	10.1	1.6	1.4	1	0	0	1	1	1	0	Cysteine-rich	CPCC
Nudix_N_2	PF14803.1	gi|292655968|ref|YP_003535865.1|	-	0.28	10.9	4.6	7.8	6.2	0.1	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Ribosomal_L32p	PF01783.18	gi|292655968|ref|YP_003535865.1|	-	0.47	10.6	2.2	5	7.3	1.5	2.1	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-TFIIB	PF13453.1	gi|292655968|ref|YP_003535865.1|	-	0.48	9.6	6.2	17	4.6	4.3	2.3	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-LITAF-like	PF10601.4	gi|292655968|ref|YP_003535865.1|	-	0.65	9.9	3.2	1.2	9.0	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292655968|ref|YP_003535865.1|	-	0.68	9.7	6.5	3	7.7	0.4	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-tcix	PF14952.1	gi|292655968|ref|YP_003535865.1|	-	0.78	9.1	3.6	14	5.0	0.3	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Prim_Zn_Ribbon	PF08273.7	gi|292655968|ref|YP_003535865.1|	-	1.5	8.9	4.8	15	5.7	0.3	2.2	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
FYVE	PF01363.16	gi|292655968|ref|YP_003535865.1|	-	1.5	8.7	4.6	13	5.7	3.1	2.0	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-ISL3	PF14690.1	gi|292655968|ref|YP_003535865.1|	-	2.4	8.2	7.1	6.4	6.9	0.6	2.5	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Peptidase_M29	PF02073.10	gi|292655969|ref|YP_003535866.1|	-	4e-115	384.7	1.6	4.6e-115	384.5	1.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
NAD_binding_2	PF03446.10	gi|292655970|ref|YP_003535867.1|	-	5.3e-38	130.4	0.1	7.9e-38	129.8	0.1	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.14	gi|292655970|ref|YP_003535867.1|	-	8.4e-23	81.0	0.0	1.4e-22	80.2	0.0	1.4	1	1	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.12	gi|292655970|ref|YP_003535867.1|	-	8.4e-06	26.1	0.1	1.4e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|292655970|ref|YP_003535867.1|	-	0.00011	21.8	0.3	0.00018	21.2	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.1	gi|292655970|ref|YP_003535867.1|	-	0.00061	19.8	0.3	0.0058	16.6	0.0	2.4	2	1	0	2	2	2	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292655970|ref|YP_003535867.1|	-	0.00066	18.8	0.0	0.00092	18.4	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|292655970|ref|YP_003535867.1|	-	0.0024	17.8	0.1	0.0042	17.0	0.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Methyltransf_18	PF12847.2	gi|292655970|ref|YP_003535867.1|	-	0.015	15.9	0.7	0.035	14.6	0.4	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
DapB_N	PF01113.15	gi|292655970|ref|YP_003535867.1|	-	0.027	14.3	1.3	0.086	12.7	0.9	1.8	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.1	gi|292655970|ref|YP_003535867.1|	-	0.03	14.3	2.3	0.22	11.4	0.1	2.8	3	0	0	3	3	3	0	NADH(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|292655970|ref|YP_003535867.1|	-	0.12	11.7	0.1	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Fer2	PF00111.22	gi|292655971|ref|YP_003535868.1|	-	2.6e-12	46.3	0.4	2.6e-12	46.3	0.3	1.6	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|292655971|ref|YP_003535868.1|	-	0.08	12.7	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
MatE	PF01554.13	gi|292655972|ref|YP_003535869.1|	-	5.8e-66	221.0	32.8	4.2e-34	117.5	11.2	2.5	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|292655972|ref|YP_003535869.1|	-	1.8e-08	34.2	7.8	1.8e-08	34.2	5.4	4.6	4	3	1	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
Yae1_N	PF09811.4	gi|292655972|ref|YP_003535869.1|	-	0.11	12.0	0.3	0.33	10.5	0.2	1.8	1	0	0	1	1	1	0	Essential	protein	Yae1,	N	terminal
MVIN	PF03023.9	gi|292655972|ref|YP_003535869.1|	-	0.16	10.3	33.3	57	1.9	23.1	3.8	1	1	0	1	1	1	0	MviN-like	protein
DDE_Tnp_1	PF01609.16	gi|292655973|ref|YP_003535870.1|	-	1.3e-27	96.7	0.0	1.8e-27	96.3	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|292655973|ref|YP_003535870.1|	-	0.0052	16.9	0.0	0.014	15.5	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292655973|ref|YP_003535870.1|	-	0.0059	15.6	0.1	0.014	14.4	0.1	1.5	2	0	0	2	2	2	1	Archaeal	putative	transposase	ISC1217
DUF2249	PF10006.4	gi|292655973|ref|YP_003535870.1|	-	0.049	13.2	0.1	0.21	11.1	0.1	2.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
CcmD	PF04995.9	gi|292655973|ref|YP_003535870.1|	-	1.4	8.7	4.1	0.37	10.5	0.3	2.0	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
Resolvase	PF00239.16	gi|292655974|ref|YP_003535871.1|	-	5.5e-34	117.0	0.2	6.2e-34	116.8	0.2	1.0	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
Pox_F16	PF04708.7	gi|292655974|ref|YP_003535871.1|	-	0.011	15.0	0.0	0.012	14.9	0.0	1.1	1	0	0	1	1	1	0	Poxvirus	F16	protein
Phage_integrase	PF00589.17	gi|292655975|ref|YP_003535872.1|	-	2.1e-12	47.0	0.0	2.7e-11	43.4	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|292655975|ref|YP_003535872.1|	-	7.1e-07	29.2	0.1	2e-06	27.8	0.1	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|292655975|ref|YP_003535872.1|	-	0.0088	16.3	0.3	0.026	14.8	0.0	1.9	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DehI	PF10778.4	gi|292655975|ref|YP_003535872.1|	-	0.13	11.8	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	Halocarboxylic	acid	dehydrogenase	DehI
DUF3268	PF11672.3	gi|292655976|ref|YP_003535873.1|	-	0.0093	16.0	0.1	0.011	15.8	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3268)
DZR	PF12773.2	gi|292655976|ref|YP_003535873.1|	-	0.011	15.5	0.5	0.019	14.8	0.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|292655976|ref|YP_003535873.1|	-	0.099	12.3	3.7	0.2	11.3	2.6	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
zf-RING_3	PF14369.1	gi|292655976|ref|YP_003535873.1|	-	0.26	11.3	1.8	3.6	7.6	0.1	2.2	2	0	0	2	2	2	0	zinc-finger
DNA_RNApol_7kD	PF03604.8	gi|292655976|ref|YP_003535873.1|	-	0.28	10.6	1.7	2.6	7.6	0.1	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.5	gi|292655976|ref|YP_003535873.1|	-	0.42	10.5	3.3	4.4	7.3	0.1	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292655976|ref|YP_003535873.1|	-	0.53	9.9	3.9	1.3	8.7	0.1	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
HTH_IclR	PF09339.5	gi|292655977|ref|YP_003535874.1|	-	0.0014	18.1	0.0	0.0031	17.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292655977|ref|YP_003535874.1|	-	0.0017	18.0	0.3	0.0056	16.3	0.0	2.1	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.1	gi|292655977|ref|YP_003535874.1|	-	0.0078	15.5	0.0	0.022	14.1	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292655977|ref|YP_003535874.1|	-	0.016	14.9	0.0	0.06	13.0	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Peptidase_M3	PF01432.15	gi|292655982|ref|YP_003535879.1|	-	6e-71	239.8	1.8	6e-71	239.8	1.2	1.9	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.5	gi|292655982|ref|YP_003535879.1|	-	2.1e-20	72.4	0.3	1.4e-19	69.8	0.2	2.6	1	0	0	1	1	1	1	Oligopeptidase	F
GldM_N	PF12081.3	gi|292655982|ref|YP_003535879.1|	-	0.11	12.0	0.4	8.7	5.8	0.1	2.4	1	1	1	2	2	2	0	GldM	N-terminal	domain
Peptidase_MA_2	PF13485.1	gi|292655982|ref|YP_003535879.1|	-	0.35	10.9	7.1	0.14	12.2	1.4	2.9	2	2	1	3	3	3	0	Peptidase	MA	superfamily
zf-ribbon_3	PF13248.1	gi|292655983|ref|YP_003535880.1|	-	0.01	15.0	1.1	2.5	7.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|292655983|ref|YP_003535880.1|	-	0.023	14.5	0.7	0.033	14.0	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ISL3	PF14690.1	gi|292655983|ref|YP_003535880.1|	-	0.047	13.7	0.7	0.72	9.9	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PhnA_Zn_Ribbon	PF08274.7	gi|292655983|ref|YP_003535880.1|	-	0.17	11.6	2.6	5.6	6.8	0.1	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Opy2	PF09463.5	gi|292655983|ref|YP_003535880.1|	-	0.24	11.5	2.7	6.6	6.9	0.1	2.1	2	0	0	2	2	2	0	Opy2	protein
UPF0547	PF10571.4	gi|292655983|ref|YP_003535880.1|	-	0.34	10.6	2.4	1.1	9.0	1.9	1.7	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|292655983|ref|YP_003535880.1|	-	0.51	9.9	2.8	2.1	7.9	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4182	PF13790.1	gi|292655983|ref|YP_003535880.1|	-	0.76	9.6	3.7	7.5	6.4	0.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4182)
zf-RING_3	PF14369.1	gi|292655983|ref|YP_003535880.1|	-	1	9.4	5.8	18	5.4	4.1	2.1	1	1	0	1	1	1	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|292655983|ref|YP_003535880.1|	-	1.6	8.7	4.8	15	5.6	3.1	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292655983|ref|YP_003535880.1|	-	2.4	8.0	6.1	0.93	9.3	0.6	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Peptidase_M28	PF04389.12	gi|292655984|ref|YP_003535881.1|	-	9.6e-28	97.1	0.2	1.3e-27	96.6	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.17	gi|292655984|ref|YP_003535881.1|	-	1.5e-08	34.2	0.2	2.4e-07	30.3	0.1	2.5	2	1	1	3	3	3	1	PA	domain
Peptidase_M42	PF05343.9	gi|292655984|ref|YP_003535881.1|	-	6.8e-05	21.7	0.2	0.0001	21.1	0.1	1.2	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|292655984|ref|YP_003535881.1|	-	0.00024	20.6	0.4	0.0004	19.9	0.3	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
DUF2892	PF11127.3	gi|292655985|ref|YP_003535882.1|	-	0.12	12.2	12.7	1.2	9.0	3.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Kinocilin	PF15033.1	gi|292655985|ref|YP_003535882.1|	-	0.76	9.3	3.6	1.5	8.3	2.5	1.4	1	1	0	1	1	1	0	Kinocilin	protein
HAD_2	PF13419.1	gi|292655986|ref|YP_003535883.1|	-	8.1e-15	55.4	0.3	1e-14	55.1	0.2	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292655986|ref|YP_003535883.1|	-	6.3e-09	35.4	0.3	1.4e-08	34.2	0.0	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|292655986|ref|YP_003535883.1|	-	6.9e-06	26.6	0.9	4.5e-05	23.9	0.6	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292655986|ref|YP_003535883.1|	-	0.022	14.9	0.7	0.052	13.7	0.5	1.6	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
PseudoU_synth_1	PF01416.15	gi|292655987|ref|YP_003535884.1|	-	4.4e-16	59.1	0.0	5.4e-10	39.6	0.0	2.5	3	0	0	3	3	3	2	tRNA	pseudouridine	synthase
Usp	PF00582.21	gi|292655988|ref|YP_003535885.1|	-	3.3e-38	131.0	4.9	3.7e-38	130.8	3.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
tRNA-synt_His	PF13393.1	gi|292655989|ref|YP_003535886.1|	-	8.9e-51	172.7	0.0	1.2e-50	172.4	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|292655989|ref|YP_003535886.1|	-	7.8e-22	77.6	0.0	1.1e-21	77.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|292655989|ref|YP_003535886.1|	-	8.3e-15	54.5	0.0	1.7e-14	53.5	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.15	gi|292655989|ref|YP_003535886.1|	-	0.03	13.5	0.0	0.061	12.5	0.0	1.4	1	1	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
EamA	PF00892.15	gi|292655990|ref|YP_003535887.1|	-	9e-19	67.7	23.5	6.7e-10	39.0	2.3	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|292655990|ref|YP_003535887.1|	-	0.0048	17.0	32.9	0.0072	16.5	5.8	3.5	1	1	2	4	4	4	2	Multidrug	resistance	efflux	transporter
UPF0546	PF10639.4	gi|292655990|ref|YP_003535887.1|	-	0.016	14.9	0.5	0.016	14.9	0.3	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0546
Asn_synthase	PF00733.16	gi|292655991|ref|YP_003535888.1|	-	0.00038	20.0	0.0	0.00058	19.4	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
PAPS_reduct	PF01507.14	gi|292655991|ref|YP_003535888.1|	-	0.0067	16.2	0.0	0.014	15.1	0.0	1.6	1	1	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_4	PF01902.12	gi|292655991|ref|YP_003535888.1|	-	0.16	11.3	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	ATP-binding	region
tRNA_Me_trans	PF03054.11	gi|292655991|ref|YP_003535888.1|	-	0.17	10.4	0.0	0.32	9.4	0.0	1.5	1	1	0	1	1	1	0	tRNA	methyl	transferase
dsDNA_bind	PF01984.15	gi|292655992|ref|YP_003535889.1|	-	2.9e-30	104.4	16.7	3.4e-30	104.1	11.6	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
PCI	PF01399.22	gi|292655992|ref|YP_003535889.1|	-	0.028	14.7	0.3	0.052	13.8	0.2	1.8	1	1	0	1	1	1	0	PCI	domain
Radial_spoke_3	PF06098.6	gi|292655992|ref|YP_003535889.1|	-	0.79	8.6	11.3	0.95	8.4	7.8	1.1	1	0	0	1	1	1	0	Radial	spoke	protein	3
Mnd1	PF03962.10	gi|292655992|ref|YP_003535889.1|	-	1.1	8.9	10.5	1.3	8.6	7.3	1.2	1	0	0	1	1	1	0	Mnd1	family
Caps_synth_GfcC	PF06251.6	gi|292655992|ref|YP_003535889.1|	-	5.5	6.0	8.4	7.2	5.7	5.8	1.3	1	1	0	1	1	1	0	Capsule	biosynthesis	GfcC
DUF4407	PF14362.1	gi|292655992|ref|YP_003535889.1|	-	5.7	5.8	10.2	6.6	5.5	7.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Ribosomal_S19e	PF01090.14	gi|292655993|ref|YP_003535890.1|	-	2.4e-46	156.6	0.0	2.7e-46	156.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.16	gi|292655993|ref|YP_003535890.1|	-	0.0029	16.9	0.3	0.053	12.9	0.1	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_12	PF08461.5	gi|292655993|ref|YP_003535890.1|	-	0.01	15.5	0.1	0.021	14.5	0.0	1.5	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Rrf2	PF02082.15	gi|292655993|ref|YP_003535890.1|	-	0.022	14.8	0.0	0.04	14.0	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.1	gi|292655993|ref|YP_003535890.1|	-	0.023	14.4	0.0	0.036	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
UPF0104	PF03706.8	gi|292655994|ref|YP_003535891.1|	-	3.9e-34	118.2	33.3	5.6e-34	117.7	23.1	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
AIRS	PF00586.19	gi|292655996|ref|YP_003535893.1|	-	4.8e-16	58.7	3.4	1.1e-15	57.5	2.4	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|292655996|ref|YP_003535893.1|	-	2.6e-09	37.2	0.5	4.1e-09	36.6	0.3	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
Peptidase_M50	PF02163.17	gi|292655997|ref|YP_003535894.1|	-	6.1e-18	64.4	2.8	1.3e-16	60.1	1.9	2.3	1	1	0	1	1	1	1	Peptidase	family	M50
MoaE	PF02391.12	gi|292655999|ref|YP_003535896.1|	-	4.9e-22	77.9	0.2	7.3e-22	77.3	0.2	1.3	1	0	0	1	1	1	1	MoaE	protein
AAA_18	PF13238.1	gi|292655999|ref|YP_003535896.1|	-	0.042	14.1	0.0	0.61	10.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
TauE	PF01925.14	gi|292656000|ref|YP_003535897.1|	-	0.0041	16.6	0.3	0.0053	16.2	0.2	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF202	PF02656.10	gi|292656000|ref|YP_003535897.1|	-	0.02	15.0	3.6	0.094	12.9	0.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF4131	PF13567.1	gi|292656000|ref|YP_003535897.1|	-	0.59	9.5	4.4	5.1	6.4	3.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
CopD	PF05425.8	gi|292656000|ref|YP_003535897.1|	-	0.71	10.1	6.8	4.3	7.5	4.7	2.0	1	1	0	1	1	1	0	Copper	resistance	protein	D
AA_kinase	PF00696.23	gi|292656001|ref|YP_003535898.1|	-	3.6e-27	95.4	5.5	4.3e-27	95.2	3.8	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Phosphonate-bd	PF12974.2	gi|292656001|ref|YP_003535898.1|	-	0.074	12.4	0.7	0.46	9.8	0.0	2.2	2	2	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
tRNA-synt_1f	PF01921.13	gi|292656002|ref|YP_003535899.1|	-	3.4e-104	348.3	0.0	5.5e-104	347.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.6	gi|292656002|ref|YP_003535899.1|	-	8.6e-08	31.2	0.0	2.2e-06	26.6	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|292656002|ref|YP_003535899.1|	-	3.8e-05	22.9	0.0	0.0063	15.6	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF1510	PF07423.6	gi|292656004|ref|YP_003535901.1|	-	0.00042	19.7	2.9	0.00042	19.7	2.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1510)
FixQ	PF05545.6	gi|292656004|ref|YP_003535901.1|	-	0.034	13.7	0.0	0.058	13.0	0.0	1.3	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF2946	PF11162.3	gi|292656004|ref|YP_003535901.1|	-	0.13	12.4	2.0	0.67	10.1	1.4	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2946)
UPF0233	PF06781.7	gi|292656004|ref|YP_003535901.1|	-	0.14	11.7	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0233)
SpoIIIAH	PF12685.2	gi|292656004|ref|YP_003535901.1|	-	0.57	9.6	7.9	0.026	14.0	1.8	1.5	2	0	0	2	2	2	0	SpoIIIAH-like	protein
Peptidase_M50	PF02163.17	gi|292656005|ref|YP_003535902.1|	-	2.4e-27	95.1	0.0	8.4e-27	93.3	0.0	1.9	2	1	0	2	2	2	1	Peptidase	family	M50
PDZ_2	PF13180.1	gi|292656005|ref|YP_003535902.1|	-	4.5e-20	71.3	0.2	6.9e-08	32.2	0.0	3.4	2	1	1	3	3	3	3	PDZ	domain
PDZ	PF00595.19	gi|292656005|ref|YP_003535902.1|	-	1.1e-07	31.9	0.6	4.5e-06	26.7	0.0	3.3	4	1	0	4	4	4	1	PDZ	domain	(Also	known	as	DHR	or	GLGF)
Tricorn_PDZ	PF14685.1	gi|292656005|ref|YP_003535902.1|	-	9.5e-05	22.1	0.9	0.0055	16.4	0.1	3.2	3	0	0	3	3	3	1	Tricorn	protease	PDZ	domain
Chlor_dismutase	PF06778.7	gi|292656006|ref|YP_003535903.1|	-	3.4e-57	193.3	0.0	5.1e-57	192.7	0.0	1.3	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.11	gi|292656006|ref|YP_003535903.1|	-	5.5e-12	45.5	5.7	1.4e-09	37.8	0.1	3.7	3	0	0	3	3	3	2	Antibiotic	biosynthesis	monooxygenase
Bac_transf	PF02397.11	gi|292656007|ref|YP_003535904.1|	-	0.053	12.6	0.0	0.055	12.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	sugar	transferase
Aldo_ket_red	PF00248.16	gi|292656009|ref|YP_003535906.1|	-	5.1e-48	163.3	0.0	6e-48	163.1	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Frankia_peptide	PF14407.1	gi|292656009|ref|YP_003535906.1|	-	0.38	10.5	3.0	3.2	7.5	0.1	3.4	3	1	1	4	4	4	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
Hexapep	PF00132.19	gi|292656010|ref|YP_003535907.1|	-	3.3e-09	35.8	5.7	3.9e-05	22.9	0.7	3.4	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|292656010|ref|YP_003535907.1|	-	0.00012	21.5	3.1	0.0039	16.7	0.2	2.8	2	1	0	2	2	2	2	Hexapeptide	repeat	of	succinyl-transferase
zinc_ribbon_2	PF13240.1	gi|292656011|ref|YP_003535908.1|	-	0.00012	21.4	1.1	0.00024	20.4	0.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|292656011|ref|YP_003535908.1|	-	0.00048	19.8	0.8	0.00065	19.4	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292656011|ref|YP_003535908.1|	-	0.00049	19.2	0.3	0.00049	19.2	0.2	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF2614	PF11023.3	gi|292656011|ref|YP_003535908.1|	-	0.15	11.8	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2614)
TF_Zn_Ribbon	PF08271.7	gi|292656011|ref|YP_003535908.1|	-	0.45	9.8	4.3	0.19	11.0	0.4	1.6	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-CCHC	PF00098.18	gi|292656011|ref|YP_003535908.1|	-	1.6	8.7	5.0	7.8	6.6	0.2	2.2	2	0	0	2	2	2	0	Zinc	knuckle
NAD_synthase	PF02540.12	gi|292656012|ref|YP_003535909.1|	-	6.6e-81	270.7	0.0	7.7e-81	270.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|292656012|ref|YP_003535909.1|	-	1.2e-05	24.0	0.0	0.0018	16.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|292656012|ref|YP_003535909.1|	-	2.7e-05	23.7	0.0	3.3e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|292656012|ref|YP_003535909.1|	-	0.011	14.9	0.0	0.046	12.9	0.0	1.9	1	1	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
HTH_23	PF13384.1	gi|292656012|ref|YP_003535909.1|	-	0.13	11.9	0.0	1.7	8.3	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
ECH	PF00378.15	gi|292656013|ref|YP_003535910.1|	-	1.9e-42	145.0	0.0	2.2e-42	144.8	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|292656013|ref|YP_003535910.1|	-	0.061	13.1	0.1	0.7	9.6	0.0	2.1	2	0	0	2	2	2	0	Peptidase	family	S49
Pectinesterase	PF01095.14	gi|292656015|ref|YP_003535912.1|	-	3e-73	246.0	0.0	3.7e-73	245.7	0.0	1.0	1	0	0	1	1	1	1	Pectinesterase
Beta_helix	PF13229.1	gi|292656015|ref|YP_003535912.1|	-	0.091	12.5	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Right	handed	beta	helix	region
DUF457	PF04307.9	gi|292656016|ref|YP_003535913.1|	-	8.7e-06	25.1	14.9	8.7e-06	25.1	10.4	1.8	1	1	1	2	2	2	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
FUSC_2	PF13515.1	gi|292656016|ref|YP_003535913.1|	-	1.2	9.0	11.8	0.21	11.5	3.5	2.4	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein-like
DUF2238	PF09997.4	gi|292656017|ref|YP_003535914.1|	-	2e-05	24.0	1.6	0.0064	15.8	0.5	2.4	1	1	1	2	2	2	2	Predicted	membrane	protein	(DUF2238)
DUF4234	PF14018.1	gi|292656017|ref|YP_003535914.1|	-	0.053	13.2	3.1	0.3	10.8	0.6	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4234)
Ferric_reduct	PF01794.14	gi|292656017|ref|YP_003535914.1|	-	1.3	9.1	9.6	2.1	8.4	6.4	1.5	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
DUF2628	PF10947.3	gi|292656017|ref|YP_003535914.1|	-	9.2	6.1	13.0	7.6	6.3	2.8	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
TrkA_N	PF02254.13	gi|292656018|ref|YP_003535915.1|	-	8.9e-26	90.1	0.1	1.2e-25	89.7	0.0	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|292656018|ref|YP_003535915.1|	-	2.1e-11	43.2	0.1	4.9e-11	42.0	0.1	1.6	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292656018|ref|YP_003535915.1|	-	3e-07	30.0	0.1	6.3e-07	28.9	0.1	1.5	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292656018|ref|YP_003535915.1|	-	2.9e-06	27.4	0.0	4.2e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|292656018|ref|YP_003535915.1|	-	3.4e-06	27.1	0.1	4.6e-06	26.7	0.1	1.2	1	0	0	1	1	1	1	NADH(P)-binding
ApbA	PF02558.11	gi|292656018|ref|YP_003535915.1|	-	2.7e-05	23.6	0.1	4.5e-05	22.9	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.7	gi|292656018|ref|YP_003535915.1|	-	6.3e-05	22.4	0.1	0.0001	21.6	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|292656018|ref|YP_003535915.1|	-	7.7e-05	22.5	0.1	0.00027	20.7	0.0	1.9	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292656018|ref|YP_003535915.1|	-	0.00012	21.2	0.1	0.00039	19.6	0.1	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|292656018|ref|YP_003535915.1|	-	0.00012	21.7	0.1	0.0002	21.0	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|292656018|ref|YP_003535915.1|	-	0.00015	22.1	0.3	0.00033	20.9	0.2	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|292656018|ref|YP_003535915.1|	-	0.00028	20.0	0.0	0.00032	19.8	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|292656018|ref|YP_003535915.1|	-	0.00035	19.5	0.0	0.0011	17.9	0.0	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Saccharop_dh	PF03435.13	gi|292656018|ref|YP_003535915.1|	-	0.00053	19.0	0.2	0.00068	18.7	0.2	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292656018|ref|YP_003535915.1|	-	0.0015	18.1	0.1	0.0023	17.5	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.1	gi|292656018|ref|YP_003535915.1|	-	0.0034	17.7	0.0	0.005	17.1	0.0	1.3	1	0	0	1	1	1	1	XdhC	Rossmann	domain
CPSase_L_chain	PF00289.17	gi|292656018|ref|YP_003535915.1|	-	0.015	15.4	0.1	0.035	14.2	0.0	1.6	1	1	1	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
AdoHcyase_NAD	PF00670.16	gi|292656018|ref|YP_003535915.1|	-	0.046	13.5	0.1	0.068	13.0	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|292656018|ref|YP_003535915.1|	-	0.046	14.2	0.0	0.066	13.7	0.0	1.3	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_8	PF13450.1	gi|292656018|ref|YP_003535915.1|	-	0.06	13.3	0.0	0.18	11.8	0.0	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
F420_oxidored	PF03807.12	gi|292656018|ref|YP_003535915.1|	-	0.079	13.3	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|292656018|ref|YP_003535915.1|	-	0.082	12.6	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.9	gi|292656018|ref|YP_003535915.1|	-	0.1	12.4	0.2	0.16	11.8	0.1	1.7	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ABC_tran	PF00005.22	gi|292656019|ref|YP_003535916.1|	-	4e-32	111.3	0.0	5.7e-32	110.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656019|ref|YP_003535916.1|	-	5.6e-11	42.9	0.0	3e-06	27.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|292656019|ref|YP_003535916.1|	-	7.4e-05	22.8	0.2	0.00016	21.7	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|292656019|ref|YP_003535916.1|	-	0.00011	21.8	0.3	0.025	14.3	0.0	2.7	2	0	0	2	2	2	1	Part	of	AAA	domain
MobB	PF03205.9	gi|292656019|ref|YP_003535916.1|	-	0.00041	20.0	0.0	0.0062	16.2	0.0	2.5	3	0	0	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|292656019|ref|YP_003535916.1|	-	0.00058	20.0	0.0	0.0012	18.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292656019|ref|YP_003535916.1|	-	0.00058	19.7	0.6	0.0028	17.5	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|292656019|ref|YP_003535916.1|	-	0.0016	18.2	0.3	0.017	14.9	0.2	2.4	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.1	gi|292656019|ref|YP_003535916.1|	-	0.002	17.7	0.1	0.064	12.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|292656019|ref|YP_003535916.1|	-	0.0027	18.5	0.0	0.0062	17.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292656019|ref|YP_003535916.1|	-	0.0032	16.9	0.0	1.1	8.6	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_25	PF13481.1	gi|292656019|ref|YP_003535916.1|	-	0.0053	16.1	0.0	0.093	12.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|292656019|ref|YP_003535916.1|	-	0.013	15.6	0.0	0.12	12.5	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|292656019|ref|YP_003535916.1|	-	0.018	14.2	0.0	0.028	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|292656019|ref|YP_003535916.1|	-	0.018	14.9	0.0	0.052	13.5	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|292656019|ref|YP_003535916.1|	-	0.036	13.2	0.0	0.44	9.7	0.0	2.0	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_18	PF13238.1	gi|292656019|ref|YP_003535916.1|	-	0.039	14.2	0.0	0.098	12.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|292656019|ref|YP_003535916.1|	-	0.057	12.9	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|292656019|ref|YP_003535916.1|	-	0.067	12.8	0.0	0.55	9.8	0.0	2.0	2	0	0	2	2	2	0	Archaeal	ATPase
AAA_5	PF07728.9	gi|292656019|ref|YP_003535916.1|	-	0.14	11.9	0.0	0.33	10.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.1	gi|292656019|ref|YP_003535916.1|	-	0.14	12.4	0.0	0.18	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|292656019|ref|YP_003535916.1|	-	0.16	11.5	0.0	0.3	10.6	0.0	1.4	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.17	gi|292656020|ref|YP_003535917.1|	-	5.9e-11	42.2	12.7	5.9e-11	42.2	8.8	1.3	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.2	gi|292656021|ref|YP_003535918.1|	-	5.8e-26	91.5	4.0	5.8e-26	91.5	2.8	1.4	2	0	0	2	2	2	1	PBP	superfamily	domain
SBP_bac_11	PF13531.1	gi|292656021|ref|YP_003535918.1|	-	1.9e-11	44.0	0.1	3e-11	43.3	0.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|292656021|ref|YP_003535918.1|	-	2.8e-05	23.1	0.1	4.5e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
LysR_substrate	PF03466.15	gi|292656021|ref|YP_003535918.1|	-	0.015	14.4	0.0	0.022	13.8	0.0	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
gerPA	PF10676.4	gi|292656021|ref|YP_003535918.1|	-	0.13	12.1	0.8	0.3	10.9	0.5	1.6	1	0	0	1	1	1	0	Spore	germination	protein	gerPA/gerPF
PIN_3	PF13470.1	gi|292656022|ref|YP_003535919.1|	-	9.6e-06	26.2	2.6	2.4e-05	24.9	1.8	1.6	1	1	0	1	1	1	1	PIN	domain
DsbD_2	PF13386.1	gi|292656023|ref|YP_003535920.1|	-	0.097	12.4	4.5	0.099	12.3	3.1	1.1	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2759	PF10958.3	gi|292656023|ref|YP_003535920.1|	-	0.13	11.9	0.2	0.13	11.9	0.1	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2759)
DUF1772	PF08592.6	gi|292656023|ref|YP_003535920.1|	-	0.13	12.0	4.5	0.14	11.8	3.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
SdpI	PF13630.1	gi|292656023|ref|YP_003535920.1|	-	0.33	10.6	1.6	0.4	10.4	1.1	1.0	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Ribosomal_S5_C	PF03719.10	gi|292656023|ref|YP_003535920.1|	-	0.75	9.1	4.6	0.63	9.3	0.9	1.9	1	1	1	2	2	2	0	Ribosomal	protein	S5,	C-terminal	domain
DUF4407	PF14362.1	gi|292656023|ref|YP_003535920.1|	-	2.6	6.9	5.8	2.7	6.8	4.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Eno-Rase_NADH_b	PF12242.3	gi|292656023|ref|YP_003535920.1|	-	6.2	6.6	8.3	9.7	6.0	5.6	1.5	1	1	1	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
ACT_7	PF13840.1	gi|292656025|ref|YP_003535922.1|	-	3.7e-17	61.5	0.5	5.1e-17	61.1	0.0	1.5	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|292656025|ref|YP_003535922.1|	-	0.00028	20.3	1.1	0.0008	18.8	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
Ham1p_like	PF01725.11	gi|292656026|ref|YP_003535923.1|	-	1.2e-42	145.3	0.0	3.6e-42	143.8	0.0	1.6	1	1	0	1	1	1	1	Ham1	family
DUF3318	PF11780.3	gi|292656027|ref|YP_003535924.1|	-	0.072	12.6	0.0	0.072	12.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3318)
Peptidase_M22	PF00814.20	gi|292656028|ref|YP_003535925.1|	-	1.3e-72	244.5	0.0	2e-72	243.9	0.0	1.3	1	0	0	1	1	1	1	Glycoprotease	family
Kdo	PF06293.9	gi|292656028|ref|YP_003535925.1|	-	0.00013	21.1	0.0	0.00023	20.2	0.0	1.4	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.18	gi|292656028|ref|YP_003535925.1|	-	0.00021	21.0	11.1	0.0024	17.6	7.7	2.8	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Ribosomal_S24e	PF01282.14	gi|292656029|ref|YP_003535926.1|	-	4.9e-28	96.7	0.5	6.6e-28	96.3	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
hNIFK_binding	PF12196.3	gi|292656029|ref|YP_003535926.1|	-	0.058	12.7	0.2	1.3	8.4	0.0	2.3	2	0	0	2	2	2	0	FHA	Ki67	binding	domain	of	hNIFK
DUF359	PF04019.7	gi|292656030|ref|YP_003535927.1|	-	9.2e-39	131.5	0.0	1.2e-38	131.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
HEM4	PF02602.10	gi|292656030|ref|YP_003535927.1|	-	0.0012	18.1	1.8	0.026	13.7	1.3	2.0	1	1	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
AraC_binding_2	PF14525.1	gi|292656030|ref|YP_003535927.1|	-	0.024	14.1	0.4	0.044	13.3	0.2	1.5	1	1	0	1	1	1	0	AraC-binding-like	domain
Spt4	PF06093.8	gi|292656031|ref|YP_003535928.1|	-	2e-15	56.4	0.1	2.3e-15	56.2	0.0	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.2	gi|292656031|ref|YP_003535928.1|	-	0.00058	19.6	1.8	0.00079	19.2	1.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.6	gi|292656031|ref|YP_003535928.1|	-	0.0086	15.8	0.1	0.0093	15.7	0.1	1.2	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-RanBP	PF00641.13	gi|292656031|ref|YP_003535928.1|	-	0.02	13.9	3.2	0.027	13.5	2.2	1.3	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.1	gi|292656031|ref|YP_003535928.1|	-	0.037	13.2	3.8	0.11	11.6	2.9	1.6	1	1	1	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|292656031|ref|YP_003535928.1|	-	0.063	12.9	2.9	0.79	9.4	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.14	gi|292656031|ref|YP_003535928.1|	-	0.09	12.4	0.4	0.1	12.2	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|292656031|ref|YP_003535928.1|	-	0.099	12.6	0.5	11	6.1	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Cytochrom_c3_2	PF14537.1	gi|292656031|ref|YP_003535928.1|	-	0.14	12.4	1.9	0.21	11.9	1.3	1.3	1	0	0	1	1	1	0	Cytochrome	c3
TF_Zn_Ribbon	PF08271.7	gi|292656031|ref|YP_003535928.1|	-	0.41	10.0	0.2	0.41	10.0	0.1	2.0	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|292656031|ref|YP_003535928.1|	-	0.86	9.6	4.1	11	6.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_2	PF13240.1	gi|292656031|ref|YP_003535928.1|	-	1.3	8.6	4.8	2.1	7.9	3.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292656031|ref|YP_003535928.1|	-	1.9	8.5	6.0	8.6	6.4	4.0	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|292656031|ref|YP_003535928.1|	-	2.3	7.7	4.6	24	4.4	0.4	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
SHS2_Rpb7-N	PF03876.12	gi|292656032|ref|YP_003535929.1|	-	2.7e-15	56.2	0.1	4.7e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.18	gi|292656032|ref|YP_003535929.1|	-	3.5e-13	49.4	0.3	8e-13	48.2	0.2	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
S1_2	PF13509.1	gi|292656032|ref|YP_003535929.1|	-	0.088	12.7	0.0	3.6	7.5	0.0	2.4	1	1	0	1	1	1	0	S1	domain
Fcf1	PF04900.7	gi|292656033|ref|YP_003535930.1|	-	3.7e-08	33.3	0.0	4.8e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	Fcf1
PIN_4	PF13638.1	gi|292656033|ref|YP_003535930.1|	-	5.2e-06	26.6	0.0	3.5e-05	23.9	0.0	1.9	1	1	1	2	2	2	1	PIN	domain
DUF188	PF02639.9	gi|292656033|ref|YP_003535930.1|	-	1e-05	24.9	0.2	1.7e-05	24.2	0.2	1.3	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
PIN_3	PF13470.1	gi|292656033|ref|YP_003535930.1|	-	0.0049	17.5	3.5	0.034	14.8	2.4	2.0	1	1	0	1	1	1	1	PIN	domain
DUF4411	PF14367.1	gi|292656033|ref|YP_003535930.1|	-	0.1	12.2	0.1	6.4	6.4	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4411)
GTP_EFTU	PF00009.22	gi|292656034|ref|YP_003535931.1|	-	1.3e-40	138.8	0.2	2.1e-40	138.1	0.2	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|292656034|ref|YP_003535931.1|	-	5.9e-27	93.5	0.0	1.1e-26	92.6	0.0	1.4	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|292656034|ref|YP_003535931.1|	-	2.6e-09	37.0	1.0	7.2e-09	35.6	0.7	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
PduV-EutP	PF10662.4	gi|292656034|ref|YP_003535931.1|	-	0.0016	17.9	0.7	0.11	11.9	0.0	2.4	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|292656034|ref|YP_003535931.1|	-	0.0025	17.7	0.0	0.005	16.7	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|292656034|ref|YP_003535931.1|	-	0.0055	15.9	1.3	0.77	9.0	0.0	2.5	1	1	1	2	2	2	2	Ferrous	iron	transport	protein	B
SRPRB	PF09439.5	gi|292656034|ref|YP_003535931.1|	-	0.016	14.3	0.1	0.47	9.6	0.1	2.1	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
RhaT	PF06379.7	gi|292656037|ref|YP_003535934.1|	-	0.021	13.8	0.3	0.023	13.6	0.2	1.1	1	0	0	1	1	1	0	L-rhamnose-proton	symport	protein	(RhaT)
SdpI	PF13630.1	gi|292656037|ref|YP_003535934.1|	-	0.071	12.8	0.7	0.081	12.6	0.5	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
UNC-50	PF05216.8	gi|292656037|ref|YP_003535934.1|	-	0.099	11.8	0.5	0.11	11.7	0.4	1.0	1	0	0	1	1	1	0	UNC-50	family
Lactamase_B_2	PF12706.2	gi|292656038|ref|YP_003535935.1|	-	1.1e-14	54.4	0.1	1.7e-14	53.8	0.1	1.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|292656038|ref|YP_003535935.1|	-	6.3e-07	29.2	4.3	9.3e-07	28.6	3.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Cytochrom_B_N	PF00033.14	gi|292656039|ref|YP_003535936.1|	-	0.0014	18.0	0.1	0.0014	18.0	0.0	2.2	1	1	1	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|292656039|ref|YP_003535936.1|	-	0.13	11.6	7.8	0.11	11.9	2.5	2.7	2	1	0	2	2	2	0	Prokaryotic	cytochrome	b561
DUF202	PF02656.10	gi|292656039|ref|YP_003535936.1|	-	1.6	9.0	11.7	1.3e+03	-0.4	8.1	3.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
AAA	PF00004.24	gi|292656040|ref|YP_003535937.1|	-	3.9e-40	137.1	0.0	8.3e-40	136.0	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|292656040|ref|YP_003535937.1|	-	8.6e-09	36.2	6.3	1.2e-08	35.7	0.1	3.2	3	1	0	3	3	2	1	AAA	domain
AAA_5	PF07728.9	gi|292656040|ref|YP_003535937.1|	-	1.3e-06	28.2	0.0	7e-06	25.8	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|292656040|ref|YP_003535937.1|	-	1.9e-06	28.2	0.9	1.8e-05	25.0	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|292656040|ref|YP_003535937.1|	-	5.2e-06	26.3	0.0	1.2e-05	25.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292656040|ref|YP_003535937.1|	-	1.7e-05	24.9	1.2	0.0024	17.9	0.4	3.2	2	1	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|292656040|ref|YP_003535937.1|	-	1.9e-05	24.6	2.2	3.4e-05	23.8	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.1	gi|292656040|ref|YP_003535937.1|	-	2e-05	24.6	6.7	0.0021	18.0	0.0	3.8	1	1	3	4	4	4	1	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|292656040|ref|YP_003535937.1|	-	5e-05	22.4	0.1	0.00013	21.0	0.1	1.8	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|292656040|ref|YP_003535937.1|	-	0.00014	21.8	0.0	0.00044	20.2	0.0	1.9	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.1	gi|292656040|ref|YP_003535937.1|	-	0.00022	20.6	0.9	0.021	14.2	0.0	3.3	1	1	1	3	3	3	1	AAA	domain
MMR_HSR1	PF01926.18	gi|292656040|ref|YP_003535937.1|	-	0.0014	18.5	0.0	0.0031	17.4	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
T2SE	PF00437.15	gi|292656040|ref|YP_003535937.1|	-	0.0015	17.5	0.0	0.0026	16.7	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
TIP49	PF06068.8	gi|292656040|ref|YP_003535937.1|	-	0.002	16.9	0.0	0.0039	15.9	0.0	1.5	1	0	0	1	1	1	1	TIP49	C-terminus
SKI	PF01202.17	gi|292656040|ref|YP_003535937.1|	-	0.0021	17.9	0.0	0.0048	16.7	0.0	1.6	1	0	0	1	1	1	1	Shikimate	kinase
AAA_19	PF13245.1	gi|292656040|ref|YP_003535937.1|	-	0.0031	17.2	0.0	0.0081	15.8	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|292656040|ref|YP_003535937.1|	-	0.0045	16.8	0.0	0.011	15.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin2	PF13189.1	gi|292656040|ref|YP_003535937.1|	-	0.0057	16.5	0.0	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
IstB_IS21	PF01695.12	gi|292656040|ref|YP_003535937.1|	-	0.011	15.2	0.1	0.031	13.7	0.0	1.8	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
Sigma54_activ_2	PF14532.1	gi|292656040|ref|YP_003535937.1|	-	0.012	15.7	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|292656040|ref|YP_003535937.1|	-	0.012	15.7	0.0	0.029	14.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.7	gi|292656040|ref|YP_003535937.1|	-	0.016	14.9	0.0	4.5	6.8	0.0	2.5	1	1	0	2	2	2	0	NACHT	domain
AAA_3	PF07726.6	gi|292656040|ref|YP_003535937.1|	-	0.027	14.0	0.0	0.054	13.1	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MobB	PF03205.9	gi|292656040|ref|YP_003535937.1|	-	0.04	13.6	0.0	0.13	11.9	0.0	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ABC_tran	PF00005.22	gi|292656040|ref|YP_003535937.1|	-	0.043	14.1	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
AAA_11	PF13086.1	gi|292656040|ref|YP_003535937.1|	-	0.044	13.3	0.0	0.12	11.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|292656040|ref|YP_003535937.1|	-	0.045	12.9	0.0	0.081	12.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Rad17	PF03215.10	gi|292656040|ref|YP_003535937.1|	-	0.063	11.9	0.0	0.089	11.4	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
Zeta_toxin	PF06414.7	gi|292656040|ref|YP_003535937.1|	-	0.077	12.0	0.0	0.18	10.8	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
ResIII	PF04851.10	gi|292656040|ref|YP_003535937.1|	-	0.097	12.4	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
SRP54	PF00448.17	gi|292656040|ref|YP_003535937.1|	-	0.13	11.6	1.1	0.34	10.3	0.0	2.1	2	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Molybdopterin	PF00384.17	gi|292656041|ref|YP_003535938.1|	-	3.6e-52	177.5	0.0	4.7e-52	177.1	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|292656041|ref|YP_003535938.1|	-	1.7e-11	43.9	0.2	6e-11	42.1	0.1	2.0	1	1	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|292656041|ref|YP_003535938.1|	-	7.7e-08	32.0	1.3	1.8e-07	30.8	0.9	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Thiolase_N	PF00108.18	gi|292656043|ref|YP_003535940.1|	-	1.3e-77	260.3	0.3	2.2e-77	259.6	0.2	1.4	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|292656043|ref|YP_003535940.1|	-	1.3e-41	140.8	0.1	2.3e-41	140.0	0.0	1.4	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|292656043|ref|YP_003535940.1|	-	0.00065	19.2	2.0	0.00065	19.2	1.4	2.2	3	1	0	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|292656043|ref|YP_003535940.1|	-	0.0023	17.5	2.6	0.71	9.5	0.0	3.0	3	0	0	3	3	3	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
ACP_syn_III_C	PF08541.5	gi|292656043|ref|YP_003535940.1|	-	0.074	13.0	0.0	0.23	11.5	0.0	1.8	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF4646	PF15496.1	gi|292656043|ref|YP_003535940.1|	-	0.13	12.3	0.1	0.49	10.4	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4646)
UPF0104	PF03706.8	gi|292656044|ref|YP_003535941.1|	-	0.088	12.0	6.8	0.088	12.0	4.7	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0104)
DUF1212	PF06738.7	gi|292656044|ref|YP_003535941.1|	-	0.35	10.2	4.5	0.36	10.2	3.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1212)
DUF979	PF06166.7	gi|292656044|ref|YP_003535941.1|	-	5.1	5.9	6.1	5.6	5.8	4.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF979)
IncA	PF04156.9	gi|292656044|ref|YP_003535941.1|	-	5.8	6.4	5.2	6.1	6.3	3.6	1.0	1	0	0	1	1	1	0	IncA	protein
Na_H_Exchanger	PF00999.16	gi|292656045|ref|YP_003535942.1|	-	3.3e-37	127.9	39.7	4.5e-37	127.4	27.5	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.13	gi|292656045|ref|YP_003535942.1|	-	1.4e-30	105.6	0.5	3.8e-30	104.2	0.4	1.8	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|292656045|ref|YP_003535942.1|	-	2.7e-14	52.5	2.7	3.6e-14	52.0	0.4	2.2	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|292656045|ref|YP_003535942.1|	-	1.1e-08	35.2	0.1	6e-08	32.8	0.1	2.2	2	0	0	2	2	2	1	Putative	NAD(P)-binding
DAO	PF01266.19	gi|292656045|ref|YP_003535942.1|	-	1.3e-05	24.3	0.1	2e-05	23.7	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_10	PF13460.1	gi|292656045|ref|YP_003535942.1|	-	2.4e-05	24.4	0.7	8.6e-05	22.6	0.4	2.0	2	0	0	2	2	1	1	NADH(P)-binding
F420_oxidored	PF03807.12	gi|292656045|ref|YP_003535942.1|	-	9.3e-05	22.7	1.0	9.3e-05	22.7	0.7	3.3	3	1	1	4	4	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|292656045|ref|YP_003535942.1|	-	0.00013	21.4	0.2	0.0004	19.8	0.2	1.9	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|292656045|ref|YP_003535942.1|	-	0.00016	20.8	0.3	0.00025	20.2	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Saccharop_dh	PF03435.13	gi|292656045|ref|YP_003535942.1|	-	0.0011	18.0	0.7	0.002	17.2	0.5	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Pyr_redox	PF00070.22	gi|292656045|ref|YP_003535942.1|	-	0.0012	19.2	0.5	0.0045	17.3	0.2	2.2	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|292656045|ref|YP_003535942.1|	-	0.0014	18.3	0.1	0.0035	17.1	0.1	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|292656045|ref|YP_003535942.1|	-	0.0014	18.2	0.5	0.0014	18.2	0.3	2.0	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292656045|ref|YP_003535942.1|	-	0.0014	17.9	0.1	0.0026	17.1	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
IlvN	PF07991.7	gi|292656045|ref|YP_003535942.1|	-	0.0031	16.9	0.2	0.0062	15.9	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
XdhC_C	PF13478.1	gi|292656045|ref|YP_003535942.1|	-	0.0048	17.1	0.1	0.011	16.1	0.0	1.6	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.9	gi|292656045|ref|YP_003535942.1|	-	0.0065	16.3	0.6	0.012	15.4	0.1	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.14	gi|292656045|ref|YP_003535942.1|	-	0.01	14.9	0.1	0.028	13.5	0.1	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Spermine_synth	PF01564.12	gi|292656045|ref|YP_003535942.1|	-	0.01	14.7	0.1	0.016	14.1	0.1	1.2	1	0	0	1	1	1	0	Spermine/spermidine	synthase
DFP	PF04127.10	gi|292656045|ref|YP_003535942.1|	-	0.013	15.1	0.1	0.031	13.8	0.1	1.6	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
NAD_binding_2	PF03446.10	gi|292656045|ref|YP_003535942.1|	-	0.018	14.8	0.1	0.039	13.7	0.0	1.7	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Lycopene_cycl	PF05834.7	gi|292656045|ref|YP_003535942.1|	-	0.019	13.9	0.1	0.028	13.3	0.1	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|292656045|ref|YP_003535942.1|	-	0.032	14.2	0.2	0.085	12.8	0.1	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Epimerase	PF01370.16	gi|292656045|ref|YP_003535942.1|	-	0.042	13.2	0.2	0.081	12.3	0.1	1.5	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
HI0933_like	PF03486.9	gi|292656045|ref|YP_003535942.1|	-	0.056	11.9	0.2	0.093	11.1	0.1	1.3	1	0	0	1	1	1	0	HI0933-like	protein
Shikimate_DH	PF01488.15	gi|292656045|ref|YP_003535942.1|	-	0.065	13.3	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
RrnaAD	PF00398.15	gi|292656045|ref|YP_003535942.1|	-	0.25	10.3	0.0	0.38	9.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
AMP-binding	PF00501.23	gi|292656046|ref|YP_003535943.1|	-	5.4e-94	314.9	0.0	6.2e-94	314.7	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
Lactamase_B	PF00753.22	gi|292656047|ref|YP_003535944.1|	-	8.8e-26	90.7	10.6	1.4e-25	90.0	7.3	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292656047|ref|YP_003535944.1|	-	0.0008	19.0	0.7	0.0011	18.5	0.5	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
HTH_3	PF01381.17	gi|292656048|ref|YP_003535945.1|	-	0.066	13.0	0.1	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix
HTH_19	PF12844.2	gi|292656048|ref|YP_003535945.1|	-	0.12	12.4	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Na_sulph_symp	PF00939.14	gi|292656049|ref|YP_003535946.1|	-	7.7e-71	239.3	37.2	9.2e-71	239.1	25.8	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.11	gi|292656049|ref|YP_003535946.1|	-	2.7e-16	59.1	34.3	1.8e-09	36.6	0.4	3.4	2	2	1	3	3	3	3	Citrate	transporter
tRNA-synt_2b	PF00587.20	gi|292656050|ref|YP_003535947.1|	-	2.2e-32	111.9	0.0	3.3e-32	111.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|292656050|ref|YP_003535947.1|	-	7.3e-30	103.1	6.5	1.2e-29	102.5	4.5	1.3	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
GreA_GreB_N	PF03449.10	gi|292656050|ref|YP_003535947.1|	-	0.021	14.8	8.7	0.051	13.6	6.0	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor,	N-terminal
bZIP_1	PF00170.16	gi|292656050|ref|YP_003535947.1|	-	0.057	13.3	3.0	4.6	7.2	0.8	2.4	2	0	0	2	2	2	0	bZIP	transcription	factor
Allexi_40kDa	PF05549.6	gi|292656050|ref|YP_003535947.1|	-	0.06	12.6	0.1	0.096	11.9	0.1	1.2	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
Mnd1	PF03962.10	gi|292656050|ref|YP_003535947.1|	-	0.061	12.9	4.4	0.1	12.2	3.0	1.3	1	0	0	1	1	1	0	Mnd1	family
DUF342	PF03961.8	gi|292656050|ref|YP_003535947.1|	-	0.084	11.2	1.5	0.12	10.7	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
PaRep2b	PF07775.6	gi|292656050|ref|YP_003535947.1|	-	0.097	10.8	0.3	0.17	10.0	0.2	1.3	1	0	0	1	1	1	0	PaRep2b	protein
OmpH	PF03938.9	gi|292656050|ref|YP_003535947.1|	-	0.11	12.4	1.8	0.21	11.5	1.2	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
APG6	PF04111.7	gi|292656050|ref|YP_003535947.1|	-	0.12	11.3	5.2	0.2	10.6	3.6	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
TMF_TATA_bd	PF12325.3	gi|292656050|ref|YP_003535947.1|	-	0.14	11.8	6.5	0.28	10.9	4.5	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
DUF904	PF06005.7	gi|292656050|ref|YP_003535947.1|	-	0.16	12.2	9.4	2.6	8.4	2.3	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
DUF1771	PF08590.5	gi|292656050|ref|YP_003535947.1|	-	0.29	11.1	3.9	0.88	9.6	0.6	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1771)
IncA	PF04156.9	gi|292656050|ref|YP_003535947.1|	-	0.32	10.5	4.9	0.58	9.7	3.4	1.4	1	0	0	1	1	1	0	IncA	protein
Borrelia_P83	PF05262.6	gi|292656050|ref|YP_003535947.1|	-	0.83	7.8	4.7	1.2	7.3	3.2	1.1	1	0	0	1	1	1	0	Borrelia	P83/100	protein
Syntaxin-6_N	PF09177.6	gi|292656050|ref|YP_003535947.1|	-	0.84	10.0	4.3	18	5.7	3.0	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
SnoaL_2	PF12680.2	gi|292656051|ref|YP_003535948.1|	-	4.5e-10	39.8	0.4	5.3e-10	39.6	0.3	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL	PF07366.7	gi|292656051|ref|YP_003535948.1|	-	0.00085	18.9	0.1	0.0016	17.9	0.0	1.4	2	0	0	2	2	2	1	SnoaL-like	polyketide	cyclase
NTF2	PF02136.15	gi|292656051|ref|YP_003535948.1|	-	0.0013	19.1	0.1	0.0019	18.5	0.1	1.3	1	1	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
SnoaL_4	PF13577.1	gi|292656051|ref|YP_003535948.1|	-	0.0059	16.5	0.4	0.0071	16.2	0.3	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.1	gi|292656051|ref|YP_003535948.1|	-	0.017	15.3	0.1	0.021	15.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4440)
DUF4443	PF14544.1	gi|292656051|ref|YP_003535948.1|	-	0.038	13.8	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4443)
DUF367	PF04034.8	gi|292656052|ref|YP_003535949.1|	-	3.4e-46	155.9	0.0	4.2e-46	155.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
RLI	PF04068.10	gi|292656052|ref|YP_003535949.1|	-	2.8e-09	36.3	0.1	4.4e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
DTW	PF03942.10	gi|292656052|ref|YP_003535949.1|	-	0.029	13.5	0.0	0.2	10.8	0.0	2.0	1	1	0	1	1	1	0	DTW	domain
DUF4212	PF13937.1	gi|292656053|ref|YP_003535950.1|	-	6.3	6.8	6.0	3	7.9	0.8	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4212)
NOG1	PF06858.9	gi|292656054|ref|YP_003535951.1|	-	1.1e-20	73.2	0.0	2.4e-20	72.1	0.0	1.6	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.18	gi|292656054|ref|YP_003535951.1|	-	8.1e-19	67.6	0.0	1.5e-18	66.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|292656054|ref|YP_003535951.1|	-	3e-11	42.8	0.0	4.9e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|292656054|ref|YP_003535951.1|	-	1.5e-05	25.4	0.0	3.4e-05	24.3	0.0	1.6	1	0	0	1	1	1	1	Miro-like	protein
AIG1	PF04548.11	gi|292656054|ref|YP_003535951.1|	-	0.00031	19.9	0.0	0.00048	19.3	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
Dynamin_N	PF00350.18	gi|292656054|ref|YP_003535951.1|	-	0.00047	20.0	0.3	0.27	11.0	0.0	2.8	2	2	1	3	3	3	2	Dynamin	family
OmpH	PF03938.9	gi|292656054|ref|YP_003535951.1|	-	0.0097	15.8	1.9	0.91	9.4	0.2	2.3	2	0	0	2	2	2	1	Outer	membrane	protein	(OmpH-like)
SRPRB	PF09439.5	gi|292656054|ref|YP_003535951.1|	-	0.02	14.0	0.0	0.052	12.7	0.0	1.7	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
DUF1822	PF08852.6	gi|292656054|ref|YP_003535951.1|	-	0.029	13.1	0.1	0.041	12.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1822)
Myosin_tail_1	PF01576.14	gi|292656054|ref|YP_003535951.1|	-	0.035	11.8	1.9	0.046	11.4	1.3	1.1	1	0	0	1	1	1	0	Myosin	tail
AAA_17	PF13207.1	gi|292656054|ref|YP_003535951.1|	-	0.036	14.8	0.5	1.2	10.0	0.0	2.5	2	2	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|292656054|ref|YP_003535951.1|	-	0.086	12.0	0.0	0.23	10.6	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|292656054|ref|YP_003535951.1|	-	0.092	12.4	0.0	0.2	11.3	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|292656054|ref|YP_003535951.1|	-	0.095	12.0	0.1	5.6	6.3	0.0	2.7	1	1	2	3	3	3	0	AAA	domain
Ras	PF00071.17	gi|292656054|ref|YP_003535951.1|	-	0.1	11.9	0.1	1	8.6	0.0	2.6	2	1	0	2	2	2	0	Ras	family
SIMPL	PF04402.9	gi|292656055|ref|YP_003535952.1|	-	1.7e-42	145.6	11.1	2e-42	145.4	7.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
IL13	PF03487.8	gi|292656055|ref|YP_003535952.1|	-	0.03	14.0	1.1	3.3	7.5	0.1	2.5	2	0	0	2	2	2	0	Interleukin-13
DUF389	PF04087.9	gi|292656056|ref|YP_003535953.1|	-	9.2e-35	119.5	18.0	9.2e-35	119.5	12.5	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
5-FTHF_cyc-lig	PF01812.15	gi|292656057|ref|YP_003535954.1|	-	9.6e-27	93.9	0.0	1.1e-26	93.7	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
HTH_10	PF04967.7	gi|292656058|ref|YP_003535955.1|	-	4.8e-16	58.0	0.2	1.6e-15	56.3	0.0	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|292656058|ref|YP_003535955.1|	-	0.0002	20.9	0.0	0.00056	19.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|292656058|ref|YP_003535955.1|	-	0.00022	20.7	0.8	0.00052	19.4	0.5	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656058|ref|YP_003535955.1|	-	0.00077	18.7	0.1	0.0014	17.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|292656058|ref|YP_003535955.1|	-	0.0021	17.3	0.1	0.021	14.0	0.1	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
TetR_N	PF00440.18	gi|292656058|ref|YP_003535955.1|	-	0.11	12.2	0.1	0.34	10.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
Fe_dep_repress	PF01325.14	gi|292656058|ref|YP_003535955.1|	-	0.11	12.3	0.1	7	6.6	0.0	2.5	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
hGDE_N	PF14699.1	gi|292656058|ref|YP_003535955.1|	-	0.13	12.1	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	N-terminal	domain	from	the	human	glycogen	debranching	enzyme
HTH_20	PF12840.2	gi|292656059|ref|YP_003535956.1|	-	0.026	14.3	0.9	0.18	11.5	0.7	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
MMR_HSR1	PF01926.18	gi|292656060|ref|YP_003535957.1|	-	5.8e-20	71.3	0.0	8.1e-20	70.9	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|292656060|ref|YP_003535957.1|	-	3.5e-13	49.1	0.2	5.4e-12	45.2	0.1	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|292656060|ref|YP_003535957.1|	-	3.1e-06	26.7	0.2	0.0022	17.4	0.0	2.4	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AIG1	PF04548.11	gi|292656060|ref|YP_003535957.1|	-	5e-05	22.5	0.1	8.8e-05	21.7	0.0	1.4	1	1	0	1	1	1	1	AIG1	family
AAA_18	PF13238.1	gi|292656060|ref|YP_003535957.1|	-	0.00011	22.4	0.0	0.00017	21.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Dynamin_N	PF00350.18	gi|292656060|ref|YP_003535957.1|	-	0.00028	20.7	0.2	0.0095	15.7	0.1	2.2	1	1	1	2	2	2	1	Dynamin	family
DUF258	PF03193.11	gi|292656060|ref|YP_003535957.1|	-	0.00055	19.1	0.0	0.00087	18.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|292656060|ref|YP_003535957.1|	-	0.0019	18.9	0.1	0.0043	17.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
Miro	PF08477.8	gi|292656060|ref|YP_003535957.1|	-	0.0052	17.2	0.2	0.021	15.3	0.2	2.1	1	1	0	1	1	1	1	Miro-like	protein
ABC_tran	PF00005.22	gi|292656060|ref|YP_003535957.1|	-	0.0052	17.0	0.0	0.0067	16.7	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
MobB	PF03205.9	gi|292656060|ref|YP_003535957.1|	-	0.02	14.5	0.1	0.048	13.3	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Ras	PF00071.17	gi|292656060|ref|YP_003535957.1|	-	0.037	13.3	0.2	0.098	12.0	0.0	1.8	2	1	1	3	3	3	0	Ras	family
AAA_29	PF13555.1	gi|292656060|ref|YP_003535957.1|	-	0.048	13.1	0.0	0.089	12.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|292656060|ref|YP_003535957.1|	-	0.051	13.7	0.7	0.16	12.0	0.1	2.1	2	2	1	3	3	2	0	AAA	domain
AAA_15	PF13175.1	gi|292656060|ref|YP_003535957.1|	-	0.058	12.4	0.0	0.068	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
RNA_helicase	PF00910.17	gi|292656060|ref|YP_003535957.1|	-	0.061	13.5	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
PduV-EutP	PF10662.4	gi|292656060|ref|YP_003535957.1|	-	0.078	12.4	0.3	0.27	10.7	0.0	1.9	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.5	gi|292656060|ref|YP_003535957.1|	-	0.082	12.1	0.1	0.15	11.2	0.1	1.6	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
TIP49	PF06068.8	gi|292656060|ref|YP_003535957.1|	-	0.086	11.5	0.4	0.13	10.8	0.2	1.2	1	0	0	1	1	1	0	TIP49	C-terminus
ATP_bind_1	PF03029.12	gi|292656060|ref|YP_003535957.1|	-	0.086	12.3	2.6	0.59	9.6	0.1	2.4	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DUF2730	PF10805.3	gi|292656060|ref|YP_003535957.1|	-	0.09	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
AAA_25	PF13481.1	gi|292656060|ref|YP_003535957.1|	-	0.1	11.9	0.4	0.78	9.1	0.3	2.2	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|292656060|ref|YP_003535957.1|	-	0.13	11.9	0.0	0.18	11.4	0.0	1.4	1	1	0	1	1	1	0	Archaeal	ATPase
2-Hacid_dh_C	PF02826.14	gi|292656061|ref|YP_003535958.1|	-	1.8e-54	183.6	0.0	2.3e-54	183.2	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|292656061|ref|YP_003535958.1|	-	2.1e-05	24.0	0.1	3.1e-05	23.4	0.1	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.12	gi|292656061|ref|YP_003535958.1|	-	7.8e-05	23.0	0.1	0.00014	22.2	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|292656061|ref|YP_003535958.1|	-	0.00013	21.8	0.1	0.0002	21.2	0.1	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_10	PF13460.1	gi|292656061|ref|YP_003535958.1|	-	0.00066	19.7	1.1	0.00098	19.1	0.4	1.6	1	1	0	1	1	1	1	NADH(P)-binding
AdoHcyase_NAD	PF00670.16	gi|292656061|ref|YP_003535958.1|	-	0.0012	18.7	0.1	0.0042	16.9	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|292656061|ref|YP_003535958.1|	-	0.012	15.2	0.2	0.019	14.6	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|292656061|ref|YP_003535958.1|	-	0.019	14.9	0.2	0.045	13.7	0.1	1.7	1	1	0	1	1	1	0	TrkA-N	domain
IlvN	PF07991.7	gi|292656061|ref|YP_003535958.1|	-	0.032	13.5	0.0	0.05	12.9	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_7	PF13241.1	gi|292656061|ref|YP_003535958.1|	-	0.058	13.6	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Gp_dh_N	PF00044.19	gi|292656061|ref|YP_003535958.1|	-	0.11	12.3	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.16	gi|292656061|ref|YP_003535958.1|	-	4.4	7.1	5.0	9.7	6.0	2.0	2.3	1	1	1	2	2	2	0	ThiF	family
DUF3179	PF11376.3	gi|292656062|ref|YP_003535959.1|	-	2.3e-12	46.6	0.0	2.6e-12	46.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
IF-2B	PF01008.12	gi|292656063|ref|YP_003535960.1|	-	8.3e-39	133.2	0.2	2.5e-38	131.6	0.2	1.7	1	1	0	1	1	1	1	Initiation	factor	2	subunit	family
NUDIX	PF00293.23	gi|292656063|ref|YP_003535960.1|	-	4.7e-12	45.7	2.7	7.3e-12	45.0	1.4	1.7	1	1	1	2	2	2	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|292656063|ref|YP_003535960.1|	-	0.0013	18.1	0.0	0.003	16.9	0.0	1.6	1	0	0	1	1	1	1	NUDIX	domain
Metallophos_2	PF12850.2	gi|292656064|ref|YP_003535961.1|	-	1.6e-23	83.2	0.2	1.8e-23	83.0	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
F420_ligase	PF01996.11	gi|292656065|ref|YP_003535962.1|	-	1.7e-66	223.5	0.0	2e-66	223.3	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Bac_luciferase	PF00296.15	gi|292656066|ref|YP_003535963.1|	-	5.2e-61	206.4	2.5	5.2e-61	206.4	1.7	1.6	1	1	1	2	2	2	1	Luciferase-like	monooxygenase
Nudix_N_2	PF14803.1	gi|292656067|ref|YP_003535964.1|	-	0.00033	20.2	0.7	0.00083	18.9	0.5	1.7	1	1	0	1	1	1	1	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.2	gi|292656067|ref|YP_003535964.1|	-	0.00062	19.5	1.4	0.0019	17.9	1.0	1.7	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292656067|ref|YP_003535964.1|	-	0.0019	18.1	1.0	0.053	13.4	0.0	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
DZR	PF12773.2	gi|292656067|ref|YP_003535964.1|	-	0.0093	15.7	0.4	0.016	15.0	0.3	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292656067|ref|YP_003535964.1|	-	0.061	12.5	0.4	0.18	11.0	0.0	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292656067|ref|YP_003535964.1|	-	0.084	12.5	1.1	0.11	12.1	0.8	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS91	PF14319.1	gi|292656067|ref|YP_003535964.1|	-	0.1	12.1	0.6	0.13	11.7	0.4	1.2	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zinc_ribbon_2	PF13240.1	gi|292656067|ref|YP_003535964.1|	-	0.23	10.9	0.1	0.23	10.9	0.1	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|292656067|ref|YP_003535964.1|	-	0.74	9.8	3.4	1.8	8.6	0.3	2.2	1	1	1	2	2	2	0	zinc-finger
A2L_zn_ribbon	PF08792.5	gi|292656067|ref|YP_003535964.1|	-	2.4	7.7	4.4	3.3	7.2	0.2	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
MutL_C	PF08676.6	gi|292656068|ref|YP_003535965.1|	-	9.7e-32	109.5	0.0	1.5e-31	108.9	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.14	gi|292656068|ref|YP_003535965.1|	-	1.2e-28	98.9	0.0	1.9e-28	98.3	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.1	gi|292656068|ref|YP_003535965.1|	-	5.1e-12	45.6	0.0	9.3e-12	44.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|292656068|ref|YP_003535965.1|	-	1.9e-10	40.4	0.1	3.8e-10	39.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MutS_V	PF00488.16	gi|292656069|ref|YP_003535966.1|	-	5.2e-91	304.2	0.0	7.3e-91	303.7	0.0	1.2	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|292656069|ref|YP_003535966.1|	-	7.4e-45	153.2	6.0	8.5e-45	153.0	3.1	1.9	2	0	0	2	2	2	1	MutS	domain	III
MutS_I	PF01624.15	gi|292656069|ref|YP_003535966.1|	-	1e-34	118.9	0.0	1.9e-34	118.0	0.0	1.5	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.13	gi|292656069|ref|YP_003535966.1|	-	4.3e-29	100.5	0.0	9.9e-29	99.3	0.0	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|292656069|ref|YP_003535966.1|	-	6.3e-11	42.4	0.0	2.7e-10	40.4	0.0	2.1	1	1	0	1	1	1	1	MutS	domain	II
AAA_29	PF13555.1	gi|292656069|ref|YP_003535966.1|	-	0.0081	15.6	0.0	0.021	14.3	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|292656069|ref|YP_003535966.1|	-	0.018	14.4	4.5	0.027	13.8	0.0	3.1	2	2	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|292656069|ref|YP_003535966.1|	-	0.17	11.8	0.0	0.45	10.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_3	PF07726.6	gi|292656070|ref|YP_003535967.1|	-	7e-59	197.1	0.1	1.1e-58	196.5	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292656070|ref|YP_003535967.1|	-	1.3e-13	50.8	0.0	2.7e-13	49.8	0.0	1.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|292656070|ref|YP_003535967.1|	-	7.1e-08	32.7	0.0	1.3e-07	31.8	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.18	gi|292656070|ref|YP_003535967.1|	-	4.6e-05	22.3	0.1	0.044	12.5	0.0	2.5	2	1	0	2	2	2	2	MCM2/3/5	family
Sigma54_activat	PF00158.21	gi|292656070|ref|YP_003535967.1|	-	6.7e-05	22.4	0.0	0.00055	19.4	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|292656070|ref|YP_003535967.1|	-	0.00037	19.7	0.0	0.0021	17.2	0.0	2.0	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.7	gi|292656070|ref|YP_003535967.1|	-	0.0022	17.0	0.0	0.011	14.8	0.0	2.0	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|292656070|ref|YP_003535967.1|	-	0.069	13.2	0.0	0.36	10.9	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
POR	PF01558.13	gi|292656070|ref|YP_003535967.1|	-	0.094	12.6	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
AAA_2	PF07724.9	gi|292656070|ref|YP_003535967.1|	-	0.11	12.4	0.0	0.33	10.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
DUF58	PF01882.13	gi|292656071|ref|YP_003535968.1|	-	4.7e-18	65.1	0.1	1.3e-17	63.6	0.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Transglut_core	PF01841.14	gi|292656072|ref|YP_003535969.1|	-	1.1e-30	106.1	0.1	2.5e-30	104.9	0.0	1.7	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF4129	PF13559.1	gi|292656072|ref|YP_003535969.1|	-	1.1e-07	31.6	10.0	1.1e-07	31.6	6.9	3.0	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4129)
Transglut_core3	PF13471.1	gi|292656072|ref|YP_003535969.1|	-	0.00015	21.5	0.0	0.00056	19.6	0.0	2.0	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
HTH_41	PF14502.1	gi|292656073|ref|YP_003535970.1|	-	0.022	14.3	0.3	0.052	13.1	0.2	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656073|ref|YP_003535970.1|	-	0.045	13.1	0.1	0.071	12.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|292656073|ref|YP_003535970.1|	-	0.086	13.1	0.0	0.22	11.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4366	PF14283.1	gi|292656073|ref|YP_003535970.1|	-	0.6	9.4	5.7	4	6.8	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4366)
Fmp27_WPPW	PF10359.4	gi|292656074|ref|YP_003535971.1|	-	0.012	14.0	0.5	0.019	13.3	0.4	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
MerR-DNA-bind	PF09278.6	gi|292656074|ref|YP_003535971.1|	-	1.7	9.1	5.3	1.7	9.0	1.4	2.4	1	1	1	2	2	2	0	MerR,	DNA	binding
SUI1	PF01253.17	gi|292656075|ref|YP_003535972.1|	-	1e-25	89.3	0.0	1.2e-25	89.1	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.9	gi|292656075|ref|YP_003535972.1|	-	0.11	12.7	0.0	0.14	12.4	0.0	1.5	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.10	gi|292656075|ref|YP_003535972.1|	-	0.17	11.0	0.7	0.2	10.8	0.5	1.1	1	0	0	1	1	1	0	DTW	domain
Rhodanese	PF00581.15	gi|292656076|ref|YP_003535973.1|	-	1e-11	45.1	0.0	1.5e-11	44.6	0.0	1.2	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.23	gi|292656077|ref|YP_003535974.1|	-	1.4e-15	57.0	1.1	2e-15	56.6	0.7	1.2	1	0	0	1	1	1	1	NUDIX	domain
HTH_10	PF04967.7	gi|292656081|ref|YP_003535978.1|	-	2.5e-18	65.3	0.0	5.1e-18	64.4	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|292656081|ref|YP_003535978.1|	-	0.0056	16.0	0.1	0.59	9.5	0.0	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
GAF	PF01590.21	gi|292656081|ref|YP_003535978.1|	-	0.021	14.9	0.7	0.18	11.8	0.0	2.4	1	1	1	2	2	2	0	GAF	domain
HTH_20	PF12840.2	gi|292656081|ref|YP_003535978.1|	-	0.031	14.0	0.4	0.75	9.6	0.0	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
PAS_9	PF13426.1	gi|292656082|ref|YP_003535979.1|	-	7.3e-20	71.2	0.0	7.9e-09	35.8	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.19	gi|292656082|ref|YP_003535979.1|	-	2.1e-19	69.3	0.0	5.2e-11	42.3	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.5	gi|292656082|ref|YP_003535979.1|	-	3.5e-19	68.8	12.0	1.9e-09	37.5	0.3	3.8	4	0	0	4	4	4	2	PAS	fold
GAF_2	PF13185.1	gi|292656082|ref|YP_003535979.1|	-	6e-15	56.0	12.3	3.6e-08	34.0	0.4	4.0	4	0	0	4	4	4	2	GAF	domain
PAS_8	PF13188.1	gi|292656082|ref|YP_003535979.1|	-	3.4e-11	42.5	0.1	6.9e-05	22.5	0.0	3.6	2	0	0	2	2	2	2	PAS	domain
GAF	PF01590.21	gi|292656082|ref|YP_003535979.1|	-	3.4e-11	43.4	1.6	1.9e-10	41.0	0.1	2.8	2	1	0	2	2	2	1	GAF	domain
GAF_3	PF13492.1	gi|292656082|ref|YP_003535979.1|	-	1.6e-10	41.1	0.3	1.6e-05	25.0	0.0	2.7	2	0	0	2	2	2	2	GAF	domain
PAS_7	PF12860.2	gi|292656082|ref|YP_003535979.1|	-	1.6e-06	28.0	1.3	0.14	12.1	0.0	4.2	3	2	0	3	3	3	2	PAS	fold
Response_reg	PF00072.19	gi|292656082|ref|YP_003535979.1|	-	0.0069	16.3	0.1	0.017	15.1	0.1	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF1382	PF07131.6	gi|292656082|ref|YP_003535979.1|	-	0.09	12.8	2.6	0.82	9.8	0.2	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1382)
DUF732	PF05305.9	gi|292656082|ref|YP_003535979.1|	-	0.18	11.9	3.4	1	9.4	1.9	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF732)
Corona_S2	PF01601.11	gi|292656082|ref|YP_003535979.1|	-	0.32	9.0	0.0	0.49	8.4	0.0	1.1	1	0	0	1	1	1	0	Coronavirus	S2	glycoprotein
Acetyltransf_1	PF00583.19	gi|292656083|ref|YP_003535980.1|	-	1.2e-15	57.3	0.0	1.6e-15	56.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656083|ref|YP_003535980.1|	-	3.2e-12	46.5	0.0	4.9e-12	46.0	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656083|ref|YP_003535980.1|	-	1e-09	38.0	0.0	2e-09	37.0	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.1	gi|292656083|ref|YP_003535980.1|	-	2.7e-09	37.0	0.0	3.7e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656083|ref|YP_003535980.1|	-	6e-07	29.3	0.0	9.1e-07	28.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292656083|ref|YP_003535980.1|	-	2e-05	24.4	0.0	2.7e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|292656083|ref|YP_003535980.1|	-	0.0017	18.3	0.0	0.0022	17.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656083|ref|YP_003535980.1|	-	0.0053	16.9	0.0	0.0063	16.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|292656083|ref|YP_003535980.1|	-	0.012	15.1	0.0	0.016	14.8	0.0	1.3	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Aconitase	PF00330.15	gi|292656084|ref|YP_003535981.1|	-	3.9e-100	335.5	0.4	1.8e-69	234.4	0.0	2.2	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|292656084|ref|YP_003535981.1|	-	9.3e-22	77.5	0.0	1.8e-21	76.5	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
dUTPase	PF00692.14	gi|292656085|ref|YP_003535982.1|	-	5.1e-11	42.1	0.0	6.5e-11	41.8	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|292656085|ref|YP_003535982.1|	-	0.072	11.4	0.0	0.38	9.1	0.0	2.0	1	1	0	1	1	1	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
AAA	PF00004.24	gi|292656086|ref|YP_003535983.1|	-	2.2e-45	154.0	0.6	1.1e-44	151.8	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|292656086|ref|YP_003535983.1|	-	1.4e-08	34.8	0.1	3.5e-08	33.5	0.0	1.7	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|292656086|ref|YP_003535983.1|	-	8.2e-08	32.0	0.4	3.7e-07	29.9	0.0	2.3	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|292656086|ref|YP_003535983.1|	-	1.4e-07	31.6	1.7	0.0008	19.4	0.0	3.3	2	1	1	3	3	3	2	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|292656086|ref|YP_003535983.1|	-	3.8e-07	29.3	0.0	1.1e-06	27.8	0.0	1.7	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|292656086|ref|YP_003535983.1|	-	9.6e-07	29.0	2.7	0.00015	21.8	0.1	3.2	2	1	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|292656086|ref|YP_003535983.1|	-	1.4e-05	24.1	0.0	2.8e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_17	PF13207.1	gi|292656086|ref|YP_003535983.1|	-	4e-05	24.4	3.1	6e-05	23.8	0.1	2.7	2	2	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|292656086|ref|YP_003535983.1|	-	0.0001	22.1	0.0	0.00037	20.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|292656086|ref|YP_003535983.1|	-	0.00024	19.9	0.1	0.00086	18.1	0.0	1.9	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_18	PF13238.1	gi|292656086|ref|YP_003535983.1|	-	0.00036	20.8	0.2	0.0099	16.1	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|292656086|ref|YP_003535983.1|	-	0.0011	18.2	0.3	0.0034	16.5	0.1	1.8	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.1	gi|292656086|ref|YP_003535983.1|	-	0.0011	18.6	0.1	0.0029	17.2	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|292656086|ref|YP_003535983.1|	-	0.0013	18.1	0.0	0.0027	17.1	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.1	gi|292656086|ref|YP_003535983.1|	-	0.0019	18.1	0.0	0.0059	16.5	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|292656086|ref|YP_003535983.1|	-	0.0021	17.7	1.2	0.023	14.4	0.0	2.6	3	0	0	3	3	2	1	NTPase
NACHT	PF05729.7	gi|292656086|ref|YP_003535983.1|	-	0.0021	17.7	0.1	0.038	13.6	0.0	2.3	1	1	0	2	2	2	1	NACHT	domain
Sigma54_activat	PF00158.21	gi|292656086|ref|YP_003535983.1|	-	0.0023	17.4	0.0	0.033	13.6	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|292656086|ref|YP_003535983.1|	-	0.0034	17.0	0.4	0.01	15.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292656086|ref|YP_003535983.1|	-	0.0034	16.5	0.2	0.0075	15.3	0.0	1.7	2	0	0	2	2	1	1	Zeta	toxin
AAA_25	PF13481.1	gi|292656086|ref|YP_003535983.1|	-	0.0042	16.4	9.5	0.017	14.4	0.0	3.6	3	1	1	4	4	3	1	AAA	domain
RNA_helicase	PF00910.17	gi|292656086|ref|YP_003535983.1|	-	0.0051	16.9	0.0	0.02	15.0	0.0	2.1	2	0	0	2	2	1	1	RNA	helicase
AAA_33	PF13671.1	gi|292656086|ref|YP_003535983.1|	-	0.0096	15.8	1.8	0.012	15.4	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
IPT	PF01745.11	gi|292656086|ref|YP_003535983.1|	-	0.015	14.4	0.6	0.7	9.0	0.0	2.5	3	0	0	3	3	3	0	Isopentenyl	transferase
Arch_ATPase	PF01637.13	gi|292656086|ref|YP_003535983.1|	-	0.02	14.6	0.4	0.13	11.9	0.0	2.3	2	1	0	2	2	2	0	Archaeal	ATPase
KaiC	PF06745.8	gi|292656086|ref|YP_003535983.1|	-	0.021	13.9	0.3	0.18	10.9	0.1	2.5	1	1	0	1	1	1	0	KaiC
AAA_3	PF07726.6	gi|292656086|ref|YP_003535983.1|	-	0.022	14.3	0.0	0.04	13.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|292656086|ref|YP_003535983.1|	-	0.024	13.5	0.1	0.086	11.6	0.0	1.8	2	0	0	2	2	2	0	NB-ARC	domain
DMPK_coil	PF08826.5	gi|292656086|ref|YP_003535983.1|	-	0.024	14.5	1.4	0.087	12.7	1.0	2.0	1	0	0	1	1	1	0	DMPK	coiled	coil	domain	like
DUF2203	PF09969.4	gi|292656086|ref|YP_003535983.1|	-	0.028	14.6	0.4	0.079	13.1	0.3	1.7	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Atrophin-1	PF03154.10	gi|292656086|ref|YP_003535983.1|	-	0.031	12.4	0.3	0.045	11.9	0.2	1.1	1	0	0	1	1	1	0	Atrophin-1	family
DUF904	PF06005.7	gi|292656086|ref|YP_003535983.1|	-	0.032	14.5	0.5	0.095	13.0	0.3	1.8	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF904)
Sigma54_activ_2	PF14532.1	gi|292656086|ref|YP_003535983.1|	-	0.04	13.9	0.0	0.13	12.3	0.0	1.8	2	0	0	2	2	1	0	Sigma-54	interaction	domain
KAP_NTPase	PF07693.9	gi|292656086|ref|YP_003535983.1|	-	0.04	12.9	0.2	0.83	8.5	0.0	2.3	2	1	0	2	2	2	0	KAP	family	P-loop	domain
Parvo_NS1	PF01057.12	gi|292656086|ref|YP_003535983.1|	-	0.042	12.7	0.0	0.08	11.7	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Bac_DnaA	PF00308.13	gi|292656086|ref|YP_003535983.1|	-	0.061	12.9	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Bacterial	dnaA	protein
YkyA	PF10368.4	gi|292656086|ref|YP_003535983.1|	-	0.11	11.8	0.9	0.24	10.7	0.5	1.6	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
ABC_tran	PF00005.22	gi|292656086|ref|YP_003535983.1|	-	0.11	12.7	0.1	0.42	10.9	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter
DUF2075	PF09848.4	gi|292656086|ref|YP_003535983.1|	-	0.18	10.7	1.4	0.5	9.2	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
SKI	PF01202.17	gi|292656086|ref|YP_003535983.1|	-	0.32	10.8	2.2	1	9.2	0.1	2.7	2	1	0	2	2	2	0	Shikimate	kinase
PvlArgDC	PF01862.11	gi|292656087|ref|YP_003535984.1|	-	1.6e-27	96.1	0.1	1.8e-27	95.9	0.1	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
HATPase_c	PF02518.21	gi|292656088|ref|YP_003535985.1|	-	8e-16	57.7	0.0	1.6e-15	56.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292656088|ref|YP_003535985.1|	-	1.6e-07	31.1	0.0	3.3e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.20	gi|292656088|ref|YP_003535985.1|	-	6.2e-05	22.9	1.6	0.00011	22.0	0.3	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|292656088|ref|YP_003535985.1|	-	0.015	14.9	0.0	0.028	14.0	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PGPGW	PF09656.5	gi|292656090|ref|YP_003535987.1|	-	0.12	11.6	2.4	0.14	11.5	1.7	1.1	1	0	0	1	1	1	0	Putative	transmembrane	protein	(PGPGW)
DUF454	PF04304.8	gi|292656090|ref|YP_003535987.1|	-	0.14	12.2	1.5	0.19	11.7	1.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF454)
MscS_TM	PF12794.2	gi|292656090|ref|YP_003535987.1|	-	0.14	10.7	0.7	0.17	10.4	0.5	1.0	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF4131	PF13567.1	gi|292656090|ref|YP_003535987.1|	-	0.15	11.4	1.2	0.16	11.3	0.8	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF308	PF03729.8	gi|292656090|ref|YP_003535987.1|	-	0.16	11.9	4.2	0.27	11.2	2.9	1.4	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
VPEP	PF07589.6	gi|292656090|ref|YP_003535987.1|	-	3.3	7.7	12.0	2.5	8.1	3.9	2.4	2	1	0	2	2	2	0	PEP-CTERM	motif
GTP_EFTU	PF00009.22	gi|292656092|ref|YP_003535989.1|	-	2.3e-32	111.9	0.0	1.4e-31	109.3	0.0	2.2	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.3	gi|292656092|ref|YP_003535989.1|	-	5e-24	84.2	1.0	1.2e-23	83.0	0.7	1.6	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|292656092|ref|YP_003535989.1|	-	2.8e-16	59.3	4.3	6.1e-12	45.4	0.1	2.9	2	0	0	2	2	2	2	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|292656092|ref|YP_003535989.1|	-	3.2e-11	42.7	0.1	8.8e-11	41.2	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|292656092|ref|YP_003535989.1|	-	2.4e-07	30.7	0.0	6.9e-07	29.2	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|292656092|ref|YP_003535989.1|	-	0.00019	21.2	0.1	0.27	11.0	0.0	2.6	1	1	0	2	2	2	2	Dynamin	family
Miro	PF08477.8	gi|292656092|ref|YP_003535989.1|	-	0.0034	17.8	0.0	0.0076	16.7	0.0	1.6	1	0	0	1	1	1	1	Miro-like	protein
ATP_bind_1	PF03029.12	gi|292656092|ref|YP_003535989.1|	-	0.014	14.9	0.0	0.038	13.5	0.0	1.8	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Ras	PF00071.17	gi|292656092|ref|YP_003535989.1|	-	0.034	13.5	0.0	0.11	11.8	0.0	1.9	1	1	0	1	1	1	0	Ras	family
MobB	PF03205.9	gi|292656092|ref|YP_003535989.1|	-	0.036	13.7	0.0	0.1	12.3	0.0	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PRC	PF05239.11	gi|292656093|ref|YP_003535990.1|	-	1.3e-10	40.9	0.0	1.4e-10	40.8	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Rad50_zn_hook	PF04423.9	gi|292656094|ref|YP_003535991.1|	-	0.0027	17.1	3.8	0.13	11.8	0.3	2.7	1	1	1	2	2	2	2	Rad50	zinc	hook	motif
DZR	PF12773.2	gi|292656094|ref|YP_003535991.1|	-	0.0037	17.0	0.4	0.0056	16.4	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
UPF0278	PF08745.6	gi|292656094|ref|YP_003535991.1|	-	0.0051	16.0	0.4	0.0072	15.6	0.3	1.3	1	0	0	1	1	1	1	UPF0278	family
DUF4411	PF14367.1	gi|292656094|ref|YP_003535991.1|	-	0.018	14.7	0.2	0.078	12.6	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4411)
Mut7-C	PF01927.11	gi|292656094|ref|YP_003535991.1|	-	0.039	13.9	0.0	0.053	13.4	0.0	1.2	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
zf-C2H2	PF00096.21	gi|292656094|ref|YP_003535991.1|	-	0.043	14.1	2.1	4.9	7.6	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-C3HC4_3	PF13920.1	gi|292656094|ref|YP_003535991.1|	-	0.054	13.1	1.1	0.077	12.6	0.8	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|292656094|ref|YP_003535991.1|	-	0.055	13.4	4.3	0.54	10.2	3.0	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
PIN	PF01850.16	gi|292656094|ref|YP_003535991.1|	-	0.087	13.1	1.6	0.39	11.0	0.2	2.0	1	1	1	2	2	2	0	PIN	domain
zf-NADH-PPase	PF09297.6	gi|292656094|ref|YP_003535991.1|	-	0.12	11.8	1.7	1.6	8.3	0.1	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.14	gi|292656094|ref|YP_003535991.1|	-	0.15	11.7	1.8	0.22	11.1	1.2	1.5	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C2HC_2	PF13913.1	gi|292656094|ref|YP_003535991.1|	-	0.16	11.6	0.7	0.16	11.6	0.5	2.3	1	1	1	2	2	2	0	zinc-finger	of	a	C2HC-type
NOB1_Zn_bind	PF08772.6	gi|292656094|ref|YP_003535991.1|	-	0.17	11.7	1.7	0.19	11.5	0.6	1.5	2	0	0	2	2	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Prok-RING_1	PF14446.1	gi|292656094|ref|YP_003535991.1|	-	0.2	11.4	2.4	0.52	10.0	1.6	1.7	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C2H2_4	PF13894.1	gi|292656094|ref|YP_003535991.1|	-	0.2	12.0	1.2	24	5.5	0.1	2.3	1	1	1	2	2	2	0	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.1	gi|292656094|ref|YP_003535991.1|	-	0.21	10.8	1.3	0.36	10.1	0.9	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Abi	PF02517.11	gi|292656095|ref|YP_003535992.1|	-	1.6e-16	60.1	6.5	1.6e-16	60.1	4.5	2.0	2	1	0	2	2	2	1	CAAX	protease	self-immunity
Pik1	PF11522.3	gi|292656095|ref|YP_003535992.1|	-	0.49	10.1	2.9	1.4	8.7	0.9	2.4	2	0	0	2	2	2	0	Yeast	phosphatidylinositol-4-OH	kinase	Pik1
PrgI	PF12666.2	gi|292656095|ref|YP_003535992.1|	-	3.1	8.0	8.3	1.1	9.4	0.1	2.9	3	0	0	3	3	3	0	PrgI	family	protein
PGI	PF00342.14	gi|292656096|ref|YP_003535993.1|	-	2.9e-54	184.3	0.0	3.9e-54	183.8	0.0	1.1	1	0	0	1	1	1	1	Phosphoglucose	isomerase
DUF378	PF04070.7	gi|292656097|ref|YP_003535994.1|	-	0.051	13.2	5.1	0.15	11.6	3.5	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF378)
Yip1	PF04893.12	gi|292656097|ref|YP_003535994.1|	-	0.2	11.1	13.1	0.3	10.5	9.1	1.3	1	0	0	1	1	1	0	Yip1	domain
ABC2_membrane_3	PF12698.2	gi|292656097|ref|YP_003535994.1|	-	0.81	8.6	5.4	1	8.3	3.7	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF805	PF05656.9	gi|292656097|ref|YP_003535994.1|	-	2.3	8.0	5.9	3.4	7.5	4.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF4131	PF13567.1	gi|292656097|ref|YP_003535994.1|	-	5.6	6.3	11.2	23	4.3	7.5	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2189	PF09955.4	gi|292656097|ref|YP_003535994.1|	-	6.6	6.6	14.1	0.074	12.9	0.8	3.2	3	1	0	3	3	3	0	Predicted	integral	membrane	protein	(DUF2189)
SNARE_assoc	PF09335.6	gi|292656098|ref|YP_003535995.1|	-	4.7e-23	81.7	5.8	4.7e-23	81.7	4.0	1.8	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
PHP_C	PF13263.1	gi|292656099|ref|YP_003535996.1|	-	6.7e-20	70.3	0.3	2.2e-19	68.6	0.1	2.0	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|292656099|ref|YP_003535996.1|	-	2.3e-18	66.5	0.3	3.2e-17	62.8	0.2	2.0	1	1	0	1	1	1	1	PHP	domain
CDP-OH_P_transf	PF01066.16	gi|292656100|ref|YP_003535997.1|	-	1.4e-14	54.1	4.9	1.4e-14	54.1	3.4	1.9	2	0	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
MVIN	PF03023.9	gi|292656100|ref|YP_003535997.1|	-	0.016	13.6	1.0	0.021	13.2	0.7	1.2	1	0	0	1	1	1	0	MviN-like	protein
Acetyltransf_1	PF00583.19	gi|292656101|ref|YP_003535998.1|	-	3.7e-12	46.1	0.0	6.6e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|292656101|ref|YP_003535998.1|	-	1.4e-06	27.9	0.0	3.9e-06	26.5	0.0	1.6	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_7	PF13508.1	gi|292656101|ref|YP_003535998.1|	-	1.3e-05	25.2	0.0	1.9e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656101|ref|YP_003535998.1|	-	2.4e-05	24.4	0.0	6.6e-05	23.0	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656101|ref|YP_003535998.1|	-	0.00016	21.8	0.0	0.00023	21.3	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656101|ref|YP_003535998.1|	-	0.00018	21.3	0.1	0.00039	20.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656101|ref|YP_003535998.1|	-	0.011	15.5	0.9	0.029	14.2	0.1	2.0	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.1	gi|292656101|ref|YP_003535998.1|	-	0.11	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
DUF2984	PF11203.3	gi|292656101|ref|YP_003535998.1|	-	2.7	8.1	7.7	0.35	10.9	0.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2984)
CDC48_2	PF02933.12	gi|292656103|ref|YP_003536000.1|	-	0.14	11.8	0.0	0.19	11.3	0.0	1.4	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	domain	2
SecD_SecF	PF02355.11	gi|292656104|ref|YP_003536001.1|	-	6.6e-32	110.2	13.2	6.6e-32	110.2	9.2	1.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.9	gi|292656104|ref|YP_003536001.1|	-	2.3e-06	26.5	0.0	6.8e-06	25.0	0.0	1.9	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
Patched	PF02460.13	gi|292656104|ref|YP_003536001.1|	-	0.037	11.9	13.7	0.05	11.5	9.5	1.1	1	0	0	1	1	1	0	Patched	family
Herpes_US9	PF06072.6	gi|292656104|ref|YP_003536001.1|	-	0.11	12.3	0.1	0.11	12.3	0.1	2.4	3	0	0	3	3	3	0	Alphaherpesvirus	tegument	protein	US9
SecD_SecF	PF02355.11	gi|292656105|ref|YP_003536002.1|	-	1.6e-13	50.2	5.6	2.8e-13	49.4	3.9	1.3	1	0	0	1	1	1	1	Protein	export	membrane	protein
Sterol-sensing	PF12349.3	gi|292656105|ref|YP_003536002.1|	-	0.00034	20.0	1.6	0.00064	19.2	1.1	1.4	1	0	0	1	1	1	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
MMPL	PF03176.10	gi|292656105|ref|YP_003536002.1|	-	0.001	17.8	10.2	0.001	17.8	7.1	1.7	2	0	0	2	2	2	1	MMPL	family
RNase_HII	PF01351.13	gi|292656107|ref|YP_003536004.1|	-	6.9e-39	133.5	0.0	7.8e-39	133.3	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
THUMP	PF02926.12	gi|292656108|ref|YP_003536005.1|	-	6.7e-09	35.7	0.0	1.2e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.14	gi|292656108|ref|YP_003536005.1|	-	0.0021	18.0	1.4	0.0021	18.0	1.0	3.0	3	0	0	3	3	3	1	DnaJ	central	domain
DUF3279	PF11682.3	gi|292656108|ref|YP_003536005.1|	-	0.12	11.9	0.8	0.23	11.0	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3279)
EamA	PF00892.15	gi|292656109|ref|YP_003536006.1|	-	1.1e-35	122.3	25.1	7.1e-20	71.3	8.2	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.11	gi|292656109|ref|YP_003536006.1|	-	4.2e-10	39.4	15.7	1.4e-08	34.5	6.7	2.5	2	0	0	2	2	2	2	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|292656109|ref|YP_003536006.1|	-	0.00015	21.9	6.1	0.00015	21.9	4.2	4.1	1	1	2	4	4	4	2	Multidrug	resistance	efflux	transporter
UPF0546	PF10639.4	gi|292656109|ref|YP_003536006.1|	-	0.032	14.0	3.2	0.37	10.6	1.1	2.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0546
TAT_signal	PF10518.4	gi|292656110|ref|YP_003536007.1|	-	0.11	12.5	1.0	0.25	11.4	0.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mucin	PF01456.12	gi|292656110|ref|YP_003536007.1|	-	3.9	7.2	39.4	0.55	10.0	16.9	2.2	2	0	0	2	2	2	0	Mucin-like	glycoprotein
DUF4112	PF13430.1	gi|292656111|ref|YP_003536008.1|	-	5.2e-15	55.2	0.4	7.4e-15	54.7	0.0	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4112)
DUF3040	PF11239.3	gi|292656111|ref|YP_003536008.1|	-	0.13	12.2	1.5	0.23	11.5	1.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
HpcH_HpaI	PF03328.9	gi|292656112|ref|YP_003536009.1|	-	2.6e-07	29.7	0.0	7e-07	28.3	0.0	1.8	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
PEP_mutase	PF13714.1	gi|292656113|ref|YP_003536010.1|	-	2.3e-45	154.7	0.1	2.7e-45	154.4	0.1	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|292656113|ref|YP_003536010.1|	-	9e-36	123.1	2.0	1.6e-17	62.9	0.0	2.1	1	1	1	2	2	2	2	Isocitrate	lyase	family
ABC_tran	PF00005.22	gi|292656114|ref|YP_003536011.1|	-	1e-30	106.7	0.0	1.6e-30	106.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656114|ref|YP_003536011.1|	-	1.6e-16	61.0	0.4	2.9e-10	40.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|292656114|ref|YP_003536011.1|	-	0.00052	19.4	0.2	0.0012	18.3	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|292656114|ref|YP_003536011.1|	-	0.0012	18.3	0.0	0.0023	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
AAA_23	PF13476.1	gi|292656114|ref|YP_003536011.1|	-	0.0043	17.3	0.0	0.0059	16.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|292656114|ref|YP_003536011.1|	-	0.0077	15.3	0.0	0.29	10.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
NTPase_1	PF03266.10	gi|292656114|ref|YP_003536011.1|	-	0.014	15.0	0.1	1.7	8.3	0.0	3.0	3	0	0	3	3	3	0	NTPase
AAA_29	PF13555.1	gi|292656114|ref|YP_003536011.1|	-	0.023	14.2	0.1	0.045	13.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|292656114|ref|YP_003536011.1|	-	0.055	13.2	0.0	0.19	11.4	0.0	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
DUF258	PF03193.11	gi|292656114|ref|YP_003536011.1|	-	0.064	12.4	0.1	0.19	10.9	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|292656114|ref|YP_003536011.1|	-	0.08	13.0	0.1	8.2	6.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.14	gi|292656114|ref|YP_003536011.1|	-	0.18	10.9	0.0	2	7.5	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ABC2_membrane	PF01061.19	gi|292656115|ref|YP_003536012.1|	-	3.1e-30	104.9	18.1	4e-30	104.5	12.5	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|292656115|ref|YP_003536012.1|	-	5.7e-07	28.8	18.8	8.1e-07	28.3	13.0	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Peptidase_S49	PF01343.13	gi|292656116|ref|YP_003536013.1|	-	3.1e-17	62.7	3.0	5.1e-08	32.8	0.6	2.4	2	0	0	2	2	2	2	Peptidase	family	S49
CLP_protease	PF00574.18	gi|292656116|ref|YP_003536013.1|	-	0.00033	20.3	0.5	0.0028	17.3	0.1	2.0	2	0	0	2	2	2	1	Clp	protease
STAS	PF01740.16	gi|292656116|ref|YP_003536013.1|	-	0.011	15.1	0.0	0.021	14.2	0.0	1.4	1	0	0	1	1	1	0	STAS	domain
OKR_DC_1_N	PF03709.10	gi|292656116|ref|YP_003536013.1|	-	0.07	13.1	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
ABC_transp_aux	PF09822.4	gi|292656117|ref|YP_003536014.1|	-	0.00031	20.3	0.0	0.00043	19.8	0.0	1.2	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Methyltrn_RNA_2	PF04013.7	gi|292656118|ref|YP_003536015.1|	-	8.8e-68	227.7	0.0	9.8e-68	227.6	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
Peripla_BP_2	PF01497.13	gi|292656119|ref|YP_003536016.1|	-	4.8e-18	65.1	0.1	6.4e-18	64.7	0.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|292656119|ref|YP_003536016.1|	-	0.04	13.9	0.4	0.095	12.7	0.2	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DICT	PF10069.4	gi|292656119|ref|YP_003536016.1|	-	0.065	12.7	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
CSD	PF00313.17	gi|292656120|ref|YP_003536017.1|	-	6e-19	67.5	0.0	6.5e-19	67.4	0.0	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|292656120|ref|YP_003536017.1|	-	0.017	14.8	0.2	0.022	14.4	0.1	1.3	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.6	gi|292656120|ref|YP_003536017.1|	-	0.037	13.5	3.3	0.052	13.0	2.3	1.2	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
Methyltransf_23	PF13489.1	gi|292656121|ref|YP_003536018.1|	-	2.7e-13	49.9	0.1	3.2e-13	49.6	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292656121|ref|YP_003536018.1|	-	2.1e-10	40.9	0.0	3.4e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292656121|ref|YP_003536018.1|	-	3.3e-10	40.2	0.0	5.8e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292656121|ref|YP_003536018.1|	-	2e-08	34.2	0.0	2.9e-08	33.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292656121|ref|YP_003536018.1|	-	1.2e-07	32.2	0.0	1.7e-07	31.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292656121|ref|YP_003536018.1|	-	2.1e-07	31.3	0.0	3.2e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292656121|ref|YP_003536018.1|	-	2.3e-06	27.2	0.0	2.7e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|292656121|ref|YP_003536018.1|	-	8.6e-05	21.9	0.0	0.00012	21.5	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
TehB	PF03848.9	gi|292656121|ref|YP_003536018.1|	-	0.046	12.8	0.0	0.075	12.1	0.0	1.3	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Methyltransf_17	PF12692.2	gi|292656121|ref|YP_003536018.1|	-	0.063	12.9	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
DUF938	PF06080.7	gi|292656121|ref|YP_003536018.1|	-	0.064	12.7	0.0	0.089	12.3	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
DUF4149	PF13664.1	gi|292656122|ref|YP_003536019.1|	-	0.13	12.3	13.2	0.12	12.4	0.4	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4149)
DUF1772	PF08592.6	gi|292656122|ref|YP_003536019.1|	-	1.2	8.8	19.2	0.079	12.6	0.3	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF1772)
YhhN	PF07947.9	gi|292656122|ref|YP_003536019.1|	-	4.9	6.4	13.8	0.22	10.8	2.9	2.1	1	1	0	2	2	2	0	YhhN-like	protein
FliD_C	PF07195.7	gi|292656123|ref|YP_003536020.1|	-	0.0029	16.9	0.0	0.39	9.9	0.0	2.2	2	0	0	2	2	2	2	Flagellar	hook-associated	protein	2	C-terminus
DUF2580	PF10824.3	gi|292656123|ref|YP_003536020.1|	-	0.024	14.9	0.4	3.7	7.9	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2580)
NPV_P10	PF05531.7	gi|292656123|ref|YP_003536020.1|	-	0.11	12.7	0.5	1.6	9.0	0.0	2.6	3	0	0	3	3	3	0	Nucleopolyhedrovirus	P10	protein
NUDIX	PF00293.23	gi|292656124|ref|YP_003536021.1|	-	1.2e-12	47.6	0.2	1.7e-12	47.1	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
Abi	PF02517.11	gi|292656125|ref|YP_003536022.1|	-	1.8e-16	60.0	1.2	1.8e-16	60.0	0.8	2.5	2	1	0	2	2	2	1	CAAX	protease	self-immunity
CitMHS	PF03600.11	gi|292656126|ref|YP_003536023.1|	-	1.3e-44	152.1	0.0	1.1e-38	132.7	0.0	2.1	1	1	1	2	2	2	2	Citrate	transporter
Na_sulph_symp	PF00939.14	gi|292656126|ref|YP_003536023.1|	-	3.2e-24	85.6	42.5	1.3e-16	60.5	13.1	3.2	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
TrkA_C	PF02080.16	gi|292656126|ref|YP_003536023.1|	-	4.4e-20	71.0	2.5	1.1e-11	44.1	0.1	2.8	2	0	0	2	2	2	2	TrkA-C	domain
MCPsignal	PF00015.16	gi|292656127|ref|YP_003536024.1|	-	1.7e-47	161.7	63.8	3.9e-46	157.2	27.5	3.5	1	1	2	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
BicD	PF09730.4	gi|292656127|ref|YP_003536024.1|	-	1.6e-06	26.8	23.6	0.00045	18.7	7.2	2.1	2	0	0	2	2	2	2	Microtubule-associated	protein	Bicaudal-D
DUF948	PF06103.6	gi|292656127|ref|YP_003536024.1|	-	0.017	14.9	39.4	0.046	13.5	2.4	6.2	3	3	2	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
GAS	PF13851.1	gi|292656127|ref|YP_003536024.1|	-	0.021	14.0	23.2	0.071	12.2	3.0	2.8	3	0	0	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
Mod_r	PF07200.8	gi|292656127|ref|YP_003536024.1|	-	0.021	14.7	28.4	0.17	11.7	2.2	4.4	3	2	1	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Laminin_II	PF06009.7	gi|292656127|ref|YP_003536024.1|	-	0.031	14.0	41.7	0.23	11.2	2.2	4.5	2	2	3	5	5	5	0	Laminin	Domain	II
Spc7	PF08317.6	gi|292656127|ref|YP_003536024.1|	-	0.13	10.9	33.0	0.074	11.6	7.1	3.0	2	1	1	3	3	3	0	Spc7	kinetochore	protein
DUF1129	PF06570.6	gi|292656127|ref|YP_003536024.1|	-	0.13	11.5	1.8	0.29	10.4	1.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
BLOC1_2	PF10046.4	gi|292656127|ref|YP_003536024.1|	-	0.76	9.9	41.1	0.088	12.9	2.3	6.0	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF869	PF05911.6	gi|292656127|ref|YP_003536024.1|	-	1.1	7.3	40.5	0.71	8.0	12.7	2.1	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
Nup54	PF13874.1	gi|292656127|ref|YP_003536024.1|	-	6.8	6.3	28.8	0.05	13.2	5.0	3.3	3	2	1	4	4	4	0	Nucleoporin	complex	subunit	54
BAR_2	PF10455.4	gi|292656127|ref|YP_003536024.1|	-	9.1	5.1	28.3	2e+02	0.6	18.1	3.0	1	1	0	1	1	1	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
7TMR-DISM_7TM	PF07695.6	gi|292656128|ref|YP_003536025.1|	-	0.005	16.5	1.5	0.0057	16.3	1.0	1.1	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
YhhN	PF07947.9	gi|292656128|ref|YP_003536025.1|	-	0.092	12.1	2.9	0.12	11.7	2.0	1.1	1	0	0	1	1	1	0	YhhN-like	protein
TGT	PF01702.13	gi|292656129|ref|YP_003536026.1|	-	2.3e-47	161.3	0.0	3e-47	160.8	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
TGT_C1	PF14809.1	gi|292656129|ref|YP_003536026.1|	-	0.046	13.5	0.1	1.6	8.5	0.0	2.4	2	0	0	2	2	2	0	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
HTH_5	PF01022.15	gi|292656130|ref|YP_003536027.1|	-	3.8e-10	39.2	0.0	4.6e-10	38.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656130|ref|YP_003536027.1|	-	5.2e-07	29.3	0.0	7.5e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292656130|ref|YP_003536027.1|	-	7e-05	22.4	0.0	0.00011	21.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|292656130|ref|YP_003536027.1|	-	0.00037	20.2	0.0	0.00056	19.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|292656130|ref|YP_003536027.1|	-	0.00041	19.6	0.0	0.00061	19.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.12	gi|292656130|ref|YP_003536027.1|	-	0.0079	15.6	0.0	0.0097	15.4	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Penicillinase_R	PF03965.11	gi|292656130|ref|YP_003536027.1|	-	0.016	15.2	0.0	0.045	13.8	0.0	1.6	1	1	0	1	1	1	0	Penicillinase	repressor
Phage_rep_org_N	PF09681.5	gi|292656130|ref|YP_003536027.1|	-	0.027	14.0	0.0	0.028	13.9	0.0	1.1	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
MarR_2	PF12802.2	gi|292656130|ref|YP_003536027.1|	-	0.066	12.8	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Rio2_N	PF09202.6	gi|292656130|ref|YP_003536027.1|	-	0.12	12.5	0.0	0.21	11.6	0.0	1.4	1	1	0	1	1	1	0	Rio2,	N-terminal
HTH_12	PF08461.5	gi|292656130|ref|YP_003536027.1|	-	0.13	12.0	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_11	PF08279.7	gi|292656130|ref|YP_003536027.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_IclR	PF09339.5	gi|292656130|ref|YP_003536027.1|	-	0.14	11.7	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Hexapep	PF00132.19	gi|292656132|ref|YP_003536029.1|	-	4.3e-13	48.1	7.2	3.2e-07	29.5	1.5	3.4	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.9	gi|292656132|ref|YP_003536029.1|	-	0.00019	21.6	0.0	0.00032	20.9	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.1	gi|292656132|ref|YP_003536029.1|	-	0.0064	16.0	2.1	0.0064	16.0	1.4	3.0	2	2	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
PAS_7	PF12860.2	gi|292656134|ref|YP_003536031.1|	-	9.1e-13	48.2	4.5	0.016	15.1	0.0	5.4	5	0	0	5	5	5	5	PAS	fold
PrcB_C	PF14343.1	gi|292656134|ref|YP_003536031.1|	-	0.0022	17.6	4.9	0.11	12.2	0.0	4.5	5	0	0	5	5	5	1	PrcB	C-terminal
Collagen_bind	PF05737.7	gi|292656134|ref|YP_003536031.1|	-	0.089	12.9	4.7	2.1	8.5	0.1	3.8	4	0	0	4	4	4	0	Collagen	binding	domain
Pyridox_ox_2	PF12900.2	gi|292656135|ref|YP_003536032.1|	-	0.0009	19.0	0.1	0.0012	18.7	0.1	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|292656135|ref|YP_003536032.1|	-	0.14	12.2	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
TGT_C2	PF14810.1	gi|292656136|ref|YP_003536033.1|	-	2.5e-20	72.1	0.0	9.4e-20	70.2	0.0	2.0	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.13	gi|292656136|ref|YP_003536033.1|	-	3.5e-14	52.6	0.0	1.1e-13	51.0	0.0	1.8	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.15	gi|292656136|ref|YP_003536033.1|	-	1.4e-13	50.3	0.3	3.3e-13	49.1	0.2	1.5	1	0	0	1	1	1	1	PUA	domain
HTH_45	PF14947.1	gi|292656138|ref|YP_003536035.1|	-	0.00016	21.4	0.0	0.00023	20.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|292656138|ref|YP_003536035.1|	-	0.0044	16.3	0.0	0.0067	15.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|292656138|ref|YP_003536035.1|	-	0.073	12.8	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|292656138|ref|YP_003536035.1|	-	0.13	12.5	0.0	0.21	11.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3322	PF11795.3	gi|292656139|ref|YP_003536036.1|	-	0.076	12.6	0.3	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
Response_reg	PF00072.19	gi|292656140|ref|YP_003536037.1|	-	6.5e-06	26.1	0.0	1e-05	25.5	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Tubulin	PF00091.20	gi|292656141|ref|YP_003536038.1|	-	1.1e-22	80.9	0.0	1.7e-22	80.2	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.1	gi|292656141|ref|YP_003536038.1|	-	0.0014	17.5	0.0	0.0023	16.9	0.0	1.3	1	0	0	1	1	1	1	Tubulin	like
zf-FPG_IleRS	PF06827.9	gi|292656142|ref|YP_003536039.1|	-	8.5e-05	22.0	2.6	0.00016	21.2	1.8	1.5	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
zf-TFIIB	PF13453.1	gi|292656142|ref|YP_003536039.1|	-	0.00031	19.8	1.7	0.00061	18.9	1.2	1.5	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.1	gi|292656142|ref|YP_003536039.1|	-	0.00062	18.8	0.7	0.0013	17.9	0.5	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.4	gi|292656142|ref|YP_003536039.1|	-	0.025	14.2	1.7	0.092	12.4	1.2	1.8	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.7	gi|292656142|ref|YP_003536039.1|	-	0.076	12.3	0.7	0.17	11.2	0.5	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|292656142|ref|YP_003536039.1|	-	0.097	12.5	0.9	0.32	10.8	0.6	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|292656142|ref|YP_003536039.1|	-	0.12	12.1	0.3	0.18	11.5	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
Lar_restr_allev	PF14354.1	gi|292656142|ref|YP_003536039.1|	-	4.9	7.5	7.2	0.28	11.5	0.6	2.3	2	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
CENP-T	PF15511.1	gi|292656142|ref|YP_003536039.1|	-	7.5	5.6	18.8	8.5	5.5	13.0	1.1	1	0	0	1	1	1	0	Centromere	kinetochore	component	CENP-T
Actin	PF00022.14	gi|292656143|ref|YP_003536040.1|	-	0.016	13.6	0.0	0.52	8.6	0.0	2.2	2	0	0	2	2	2	0	Actin
Tetraspannin	PF00335.15	gi|292656144|ref|YP_003536041.1|	-	0.084	12.1	0.3	0.14	11.4	0.2	1.4	1	0	0	1	1	1	0	Tetraspanin	family
DUF3484	PF11983.3	gi|292656144|ref|YP_003536041.1|	-	0.14	12.9	0.3	0.42	11.4	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3484)
Ribosomal_60s	PF00428.14	gi|292656144|ref|YP_003536041.1|	-	1.4	9.4	11.2	0.23	11.9	2.5	2.6	2	0	0	2	2	2	0	60s	Acidic	ribosomal	protein
Yip1	PF04893.12	gi|292656144|ref|YP_003536041.1|	-	10	5.6	16.1	36	3.8	11.2	1.8	1	1	0	1	1	1	0	Yip1	domain
Pentapeptide_3	PF13576.1	gi|292656145|ref|YP_003536042.1|	-	2.9e-21	75.0	16.0	2.8e-06	27.0	0.5	6.9	4	3	2	7	7	7	7	Pentapeptide	repeats	(9	copies)
Bactofilin	PF04519.8	gi|292656145|ref|YP_003536042.1|	-	0.093	12.7	1.6	1.2	9.2	0.2	3.2	5	0	0	5	5	5	0	Polymer-forming	cytoskeletal
PRC	PF05239.11	gi|292656147|ref|YP_003536044.1|	-	1.4e-12	47.2	0.0	1.5e-12	47.1	0.0	1.0	1	0	0	1	1	1	1	PRC-barrel	domain
DUF502	PF04367.8	gi|292656148|ref|YP_003536045.1|	-	7.6e-21	73.9	0.7	1.4e-20	73.1	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
DUF805	PF05656.9	gi|292656148|ref|YP_003536045.1|	-	0.07	12.9	3.3	0.24	11.2	2.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
LHC	PF00556.15	gi|292656148|ref|YP_003536045.1|	-	0.3	10.9	3.9	2.8	7.8	2.9	2.3	2	0	0	2	2	2	0	Antenna	complex	alpha/beta	subunit
HTH_20	PF12840.2	gi|292656152|ref|YP_003536049.1|	-	0.08	12.7	0.7	2.5	7.9	0.4	2.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292656152|ref|YP_003536049.1|	-	0.15	11.8	0.0	0.33	10.7	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PAS_9	PF13426.1	gi|292656153|ref|YP_003536050.1|	-	1.2e-34	118.8	0.0	1.6e-18	66.9	0.0	2.9	3	0	0	3	3	3	2	PAS	domain
Response_reg	PF00072.19	gi|292656153|ref|YP_003536050.1|	-	3.5e-20	72.0	0.0	7.5e-20	71.0	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.5	gi|292656153|ref|YP_003536050.1|	-	2.9e-19	69.1	0.4	7.9e-11	41.9	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.19	gi|292656153|ref|YP_003536050.1|	-	5.8e-19	67.9	0.0	3.5e-08	33.2	0.0	2.3	2	0	0	2	2	2	2	PAS	fold
PAS_3	PF08447.6	gi|292656153|ref|YP_003536050.1|	-	3.5e-10	39.8	0.0	4.3e-08	33.1	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|292656153|ref|YP_003536050.1|	-	7.6e-10	38.2	0.0	0.00058	19.6	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
PAS_7	PF12860.2	gi|292656153|ref|YP_003536050.1|	-	0.02	14.9	0.0	10	6.1	0.0	3.2	3	0	0	3	3	3	0	PAS	fold
SBP_bac_3	PF00497.15	gi|292656153|ref|YP_003536050.1|	-	0.044	13.0	0.0	0.095	11.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
HR_lesion	PF05514.6	gi|292656155|ref|YP_003536052.1|	-	3e-05	23.8	0.1	0.0017	18.1	0.1	2.1	1	1	1	2	2	2	2	HR-like	lesion-inducing
DoxX	PF07681.7	gi|292656155|ref|YP_003536052.1|	-	9e-05	22.8	1.4	0.00015	22.1	0.9	1.3	1	0	0	1	1	1	1	DoxX
PAS_9	PF13426.1	gi|292656157|ref|YP_003536054.1|	-	7.7e-60	199.7	0.0	6.5e-27	93.9	0.0	4.2	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.19	gi|292656157|ref|YP_003536054.1|	-	5.9e-34	116.2	0.1	9e-13	48.0	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.5	gi|292656157|ref|YP_003536054.1|	-	4.5e-31	107.1	4.3	1.9e-09	37.4	0.0	4.3	4	1	1	5	5	5	3	PAS	fold
PAS_8	PF13188.1	gi|292656157|ref|YP_003536054.1|	-	7e-22	76.4	0.0	4e-06	26.4	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.6	gi|292656157|ref|YP_003536054.1|	-	1.1e-13	51.1	0.1	4.7e-07	29.8	0.0	4.3	4	1	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|292656157|ref|YP_003536054.1|	-	1.6e-13	50.3	0.1	4.1e-13	49.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292656157|ref|YP_003536054.1|	-	5.3e-12	45.5	0.6	5.3e-12	45.5	0.4	3.3	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.19	gi|292656157|ref|YP_003536054.1|	-	0.00012	22.0	0.0	0.0048	16.8	0.0	2.8	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c_3	PF13589.1	gi|292656157|ref|YP_003536054.1|	-	0.022	14.4	0.0	0.044	13.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
AsnC_trans_reg	PF01037.16	gi|292656158|ref|YP_003536055.1|	-	1.5e-12	47.0	0.0	2.7e-12	46.1	0.0	1.5	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|292656158|ref|YP_003536055.1|	-	2.2e-12	46.1	1.3	3.1e-12	45.6	0.2	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292656158|ref|YP_003536055.1|	-	6e-10	38.6	0.1	1.9e-09	37.0	0.1	1.9	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656158|ref|YP_003536055.1|	-	2.4e-08	33.6	0.2	6e-08	32.3	0.1	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292656158|ref|YP_003536055.1|	-	5.3e-08	32.2	2.0	7.1e-08	31.8	0.4	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656158|ref|YP_003536055.1|	-	4.1e-07	29.5	0.1	1.2e-06	28.1	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|292656158|ref|YP_003536055.1|	-	7.6e-06	25.5	0.0	1.6e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|292656158|ref|YP_003536055.1|	-	2.1e-05	23.8	0.1	4.4e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|292656158|ref|YP_003536055.1|	-	3e-05	23.9	0.0	5.4e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656158|ref|YP_003536055.1|	-	9.5e-05	21.9	0.0	0.00021	20.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292656158|ref|YP_003536055.1|	-	0.00011	21.7	0.1	0.00029	20.3	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|292656158|ref|YP_003536055.1|	-	0.0002	20.9	0.0	0.00044	19.8	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.1	gi|292656158|ref|YP_003536055.1|	-	0.00035	20.0	0.0	0.00062	19.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.7	gi|292656158|ref|YP_003536055.1|	-	0.00042	19.8	0.0	0.00084	18.8	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|292656158|ref|YP_003536055.1|	-	0.00052	19.5	0.2	0.0011	18.4	0.1	1.6	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656158|ref|YP_003536055.1|	-	0.0017	17.9	0.0	0.0033	17.0	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|292656158|ref|YP_003536055.1|	-	0.0027	17.4	0.0	0.005	16.5	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292656158|ref|YP_003536055.1|	-	0.0071	16.2	0.0	0.015	15.2	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Mga	PF05043.8	gi|292656158|ref|YP_003536055.1|	-	0.0075	16.5	0.0	0.019	15.2	0.0	1.6	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
HTH_36	PF13730.1	gi|292656158|ref|YP_003536055.1|	-	0.011	15.8	0.0	0.018	15.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_41	PF14502.1	gi|292656158|ref|YP_003536055.1|	-	0.015	14.9	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|292656158|ref|YP_003536055.1|	-	0.017	14.9	0.0	0.048	13.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
RPA_C	PF08784.6	gi|292656158|ref|YP_003536055.1|	-	0.03	14.7	0.2	0.17	12.3	0.0	2.0	2	1	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_1	PF00126.22	gi|292656158|ref|YP_003536055.1|	-	0.03	14.0	0.0	0.065	12.9	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Tnp_ISL3	PF13542.1	gi|292656158|ref|YP_003536055.1|	-	0.031	13.4	0.0	0.08	12.1	0.0	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Rrf2	PF02082.15	gi|292656158|ref|YP_003536055.1|	-	0.035	14.2	0.0	0.16	12.1	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_29	PF13551.1	gi|292656158|ref|YP_003536055.1|	-	0.042	13.9	0.0	0.17	12.0	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_CodY	PF08222.6	gi|292656158|ref|YP_003536055.1|	-	0.06	12.6	0.2	0.13	11.6	0.0	1.6	2	0	0	2	2	1	0	CodY	helix-turn-helix	domain
DDRGK	PF09756.4	gi|292656158|ref|YP_003536055.1|	-	0.073	12.4	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
RepL	PF05732.6	gi|292656158|ref|YP_003536055.1|	-	0.1	11.8	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_34	PF13601.1	gi|292656158|ref|YP_003536055.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Mga	PF08280.6	gi|292656158|ref|YP_003536055.1|	-	0.12	12.1	0.0	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
GerE	PF00196.14	gi|292656158|ref|YP_003536055.1|	-	0.12	11.6	0.0	0.29	10.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.7	gi|292656158|ref|YP_003536055.1|	-	0.14	11.6	0.0	0.28	10.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Bmp	PF02608.9	gi|292656159|ref|YP_003536056.1|	-	2.7e-45	154.4	4.3	3.6e-45	154.0	3.0	1.2	1	0	0	1	1	1	1	Basic	membrane	protein
TAT_signal	PF10518.4	gi|292656159|ref|YP_003536056.1|	-	0.018	15.0	0.1	0.018	15.0	0.1	2.3	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|292656160|ref|YP_003536057.1|	-	4e-44	150.2	0.0	1.3e-26	93.5	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|292656160|ref|YP_003536057.1|	-	2.1e-11	44.3	0.0	9.8e-05	22.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|292656160|ref|YP_003536057.1|	-	0.0034	16.4	0.0	0.1	11.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292656160|ref|YP_003536057.1|	-	0.004	16.6	0.0	0.018	14.5	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|292656160|ref|YP_003536057.1|	-	0.0052	17.1	0.0	0.0087	16.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|292656160|ref|YP_003536057.1|	-	0.006	15.7	0.1	0.058	12.5	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|292656160|ref|YP_003536057.1|	-	0.026	14.6	0.1	0.15	12.2	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|292656160|ref|YP_003536057.1|	-	0.049	13.0	0.1	0.52	9.7	0.0	2.4	3	0	0	3	3	3	0	AAA-like	domain
AAA_16	PF13191.1	gi|292656160|ref|YP_003536057.1|	-	0.065	13.2	0.2	0.74	9.7	0.2	2.5	1	1	0	1	1	1	0	AAA	ATPase	domain
SMC_N	PF02463.14	gi|292656160|ref|YP_003536057.1|	-	0.11	11.7	0.2	0.6	9.2	0.0	2.2	2	1	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|292656160|ref|YP_003536057.1|	-	0.19	10.2	1.8	7.4	5.0	0.0	3.3	3	1	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
BPD_transp_2	PF02653.11	gi|292656161|ref|YP_003536058.1|	-	1.4e-47	161.9	29.5	1.4e-47	161.9	20.4	1.9	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|292656162|ref|YP_003536059.1|	-	1.2e-34	119.5	39.3	1.2e-34	119.5	27.2	1.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Phage_holin_2	PF04550.7	gi|292656162|ref|YP_003536059.1|	-	0.088	12.9	0.4	0.088	12.9	0.3	3.8	3	1	1	4	4	4	0	Phage	holin	family	2
Regulator_TrmB	PF11495.3	gi|292656163|ref|YP_003536060.1|	-	4.1e-52	176.4	0.0	5.3e-52	176.1	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|292656163|ref|YP_003536060.1|	-	4.5e-18	64.7	0.1	1e-17	63.5	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292656163|ref|YP_003536060.1|	-	0.0009	18.8	0.1	0.0078	15.8	0.0	2.5	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|292656163|ref|YP_003536060.1|	-	0.0024	17.4	0.0	0.014	14.9	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|292656163|ref|YP_003536060.1|	-	0.0086	16.1	0.0	0.018	15.1	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_29	PF13551.1	gi|292656163|ref|YP_003536060.1|	-	0.0087	16.1	0.0	0.021	14.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.17	gi|292656163|ref|YP_003536060.1|	-	0.011	15.3	0.0	0.033	13.8	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|292656163|ref|YP_003536060.1|	-	0.016	14.8	0.1	0.25	11.0	0.0	2.4	2	0	0	2	2	2	0	HTH	domain
HTH_24	PF13412.1	gi|292656163|ref|YP_003536060.1|	-	0.031	13.6	0.2	0.54	9.6	0.0	2.9	4	0	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|292656163|ref|YP_003536060.1|	-	0.033	13.9	0.0	0.073	12.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656163|ref|YP_003536060.1|	-	0.079	12.6	0.1	0.34	10.6	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
SHOCT	PF09851.4	gi|292656165|ref|YP_003536062.1|	-	2.3e-06	26.8	0.1	3.1e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1469	PF07332.6	gi|292656165|ref|YP_003536062.1|	-	0.0078	15.9	1.6	0.01	15.5	1.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1469)
DUF1707	PF08044.6	gi|292656165|ref|YP_003536062.1|	-	0.0081	15.8	0.3	0.0081	15.8	0.2	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.7	gi|292656165|ref|YP_003536062.1|	-	0.02	14.6	0.0	0.025	14.3	0.0	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Peripla_BP_2	PF01497.13	gi|292656167|ref|YP_003536064.1|	-	1.4e-11	44.0	0.0	2e-11	43.4	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|292656167|ref|YP_003536064.1|	-	0.016	15.1	0.7	0.036	14.0	0.5	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF2339	PF10101.4	gi|292656168|ref|YP_003536065.1|	-	0.0039	15.5	11.8	0.0043	15.4	8.2	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2339)
Epimerase	PF01370.16	gi|292656169|ref|YP_003536066.1|	-	5.8e-42	143.7	0.0	7e-42	143.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|292656169|ref|YP_003536066.1|	-	4.2e-14	52.1	0.0	5.1e-14	51.8	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|292656169|ref|YP_003536066.1|	-	1.3e-10	40.4	0.0	2.6e-10	39.4	0.0	1.5	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|292656169|ref|YP_003536066.1|	-	2e-09	36.7	0.0	2.3e-06	26.7	0.0	2.3	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|292656169|ref|YP_003536066.1|	-	3.9e-08	32.5	0.0	2.2e-05	23.5	0.0	2.1	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|292656169|ref|YP_003536066.1|	-	3.8e-05	23.6	0.1	0.0069	16.3	0.0	2.4	1	1	0	2	2	2	1	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|292656169|ref|YP_003536066.1|	-	0.00074	19.5	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|292656169|ref|YP_003536066.1|	-	0.078	12.3	0.0	10	5.4	0.0	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
KR	PF08659.5	gi|292656169|ref|YP_003536066.1|	-	0.12	12.0	0.0	0.33	10.5	0.0	1.7	2	0	0	2	2	2	0	KR	domain
7TMR-DISM_7TM	PF07695.6	gi|292656170|ref|YP_003536067.1|	-	0.0073	15.9	1.6	0.0088	15.7	1.1	1.0	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
DAD	PF02109.11	gi|292656170|ref|YP_003536067.1|	-	0.026	14.5	0.2	0.029	14.4	0.2	1.1	1	0	0	1	1	1	0	DAD	family
DUF2244	PF10003.4	gi|292656170|ref|YP_003536067.1|	-	0.085	12.2	2.4	0.099	12.0	1.7	1.1	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Cdc6_C	PF09079.6	gi|292656171|ref|YP_003536068.1|	-	8.4e-20	70.2	0.0	1.7e-19	69.3	0.0	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|292656171|ref|YP_003536068.1|	-	2.2e-12	47.3	0.2	2.3e-11	44.0	0.1	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656171|ref|YP_003536068.1|	-	2.9e-12	46.8	0.0	9.8e-12	45.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_32	PF13654.1	gi|292656171|ref|YP_003536068.1|	-	0.00043	19.0	0.1	0.19	10.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.24	gi|292656171|ref|YP_003536068.1|	-	0.001	19.2	0.0	0.0025	18.0	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|292656171|ref|YP_003536068.1|	-	0.0031	16.4	0.0	0.005	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|292656171|ref|YP_003536068.1|	-	0.0031	17.2	0.0	0.007	16.0	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|292656171|ref|YP_003536068.1|	-	0.026	14.1	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.17	gi|292656171|ref|YP_003536068.1|	-	0.028	13.2	0.0	0.047	12.5	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|292656171|ref|YP_003536068.1|	-	0.033	14.4	0.0	0.059	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|292656171|ref|YP_003536068.1|	-	0.036	14.8	0.0	0.065	14.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|292656171|ref|YP_003536068.1|	-	0.045	13.9	0.0	0.088	12.9	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Sigma54_activat	PF00158.21	gi|292656171|ref|YP_003536068.1|	-	0.053	13.0	0.0	0.09	12.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|292656171|ref|YP_003536068.1|	-	0.091	12.4	0.1	1.6	8.4	0.0	2.9	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Borrelia_orfA	PF02414.10	gi|292656171|ref|YP_003536068.1|	-	0.11	11.6	0.0	0.17	10.9	0.0	1.2	1	0	0	1	1	1	0	Borrelia	ORF-A
Glycos_transf_1	PF00534.15	gi|292656172|ref|YP_003536069.1|	-	1.9e-27	95.7	0.0	2.6e-27	95.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|292656172|ref|YP_003536069.1|	-	6.2e-17	62.0	0.1	9.2e-17	61.4	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
LAGLIDADG_2	PF03161.8	gi|292656173|ref|YP_003536070.1|	-	9.2e-13	48.4	0.0	1.3e-12	47.9	0.0	1.2	1	0	0	1	1	1	1	LAGLIDADG	DNA	endonuclease	family
HTH_10	PF04967.7	gi|292656173|ref|YP_003536070.1|	-	3.6e-05	23.2	0.7	0.37	10.4	0.0	2.9	3	0	0	3	3	3	2	HTH	DNA	binding	domain
HTH_7	PF02796.10	gi|292656173|ref|YP_003536070.1|	-	5.6e-05	22.9	0.0	0.00042	20.1	0.0	2.3	2	1	1	3	3	3	1	Helix-turn-helix	domain	of	resolvase
Sigma70_r4_2	PF08281.7	gi|292656173|ref|YP_003536070.1|	-	0.00011	21.6	0.4	0.0035	16.7	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|292656173|ref|YP_003536070.1|	-	0.00013	21.4	0.2	0.0014	18.2	0.0	2.4	3	0	0	3	3	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|292656173|ref|YP_003536070.1|	-	0.00023	20.4	3.4	0.0042	16.3	0.1	2.9	3	0	0	3	3	2	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|292656173|ref|YP_003536070.1|	-	0.00025	20.5	0.0	0.0013	18.1	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|292656173|ref|YP_003536070.1|	-	0.00027	20.8	0.1	0.0028	17.6	0.0	2.5	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656173|ref|YP_003536070.1|	-	0.00041	19.6	0.0	0.0019	17.5	0.0	2.2	3	0	0	3	3	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292656173|ref|YP_003536070.1|	-	0.0009	18.7	0.3	0.013	15.0	0.0	2.8	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656173|ref|YP_003536070.1|	-	0.0025	17.4	0.2	0.53	9.9	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_psq	PF05225.11	gi|292656173|ref|YP_003536070.1|	-	0.0039	16.6	0.0	0.016	14.7	0.0	2.0	2	0	0	2	2	2	1	helix-turn-helix,	Psq	domain
HTH_Tnp_IS630	PF01710.11	gi|292656173|ref|YP_003536070.1|	-	0.0069	16.0	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Transposase
HTH_20	PF12840.2	gi|292656173|ref|YP_003536070.1|	-	0.0095	15.7	0.0	0.39	10.5	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656173|ref|YP_003536070.1|	-	0.014	15.0	0.0	0.04	13.5	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292656173|ref|YP_003536070.1|	-	0.014	14.9	0.3	0.96	9.0	0.0	2.6	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
DUF3962	PF13111.1	gi|292656173|ref|YP_003536070.1|	-	0.016	14.5	0.1	0.025	13.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3962)
GntR	PF00392.16	gi|292656173|ref|YP_003536070.1|	-	0.018	14.5	0.0	0.061	12.7	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
UPF0122	PF04297.9	gi|292656173|ref|YP_003536070.1|	-	0.022	14.7	0.1	1.2	9.2	0.0	2.4	2	0	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_Tnp_1	PF01527.15	gi|292656173|ref|YP_003536070.1|	-	0.026	14.4	0.0	7.6	6.5	0.0	2.3	2	0	0	2	2	2	0	Transposase
HTH_Tnp_ISL3	PF13542.1	gi|292656173|ref|YP_003536070.1|	-	0.035	13.2	0.0	0.12	11.5	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
GcrA	PF07750.6	gi|292656173|ref|YP_003536070.1|	-	0.045	13.9	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	GcrA	cell	cycle	regulator
GerE	PF00196.14	gi|292656173|ref|YP_003536070.1|	-	0.09	12.0	0.0	0.34	10.2	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_ECF	PF07638.6	gi|292656173|ref|YP_003536070.1|	-	0.12	12.0	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	ECF	sigma	factor
HTH_27	PF13463.1	gi|292656174|ref|YP_003536071.1|	-	0.0018	18.5	0.0	0.0026	18.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Sulfatase	PF00884.18	gi|292656175|ref|YP_003536072.1|	-	5.3e-19	68.5	0.0	2.3e-14	53.3	0.0	2.2	2	0	0	2	2	2	2	Sulfatase
DUF229	PF02995.12	gi|292656175|ref|YP_003536072.1|	-	0.0022	16.5	0.0	0.0025	16.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Phosphodiest	PF01663.17	gi|292656175|ref|YP_003536072.1|	-	0.03	13.6	1.1	2.3	7.4	0.2	2.2	1	1	1	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|292656176|ref|YP_003536073.1|	-	0.0033	16.6	0.1	0.0042	16.3	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Glycos_transf_1	PF00534.15	gi|292656177|ref|YP_003536074.1|	-	1.9e-28	99.0	0.0	8.3e-28	96.9	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|292656177|ref|YP_003536074.1|	-	1.3e-14	54.5	0.0	2.8e-14	53.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|292656177|ref|YP_003536074.1|	-	3.7e-10	39.7	0.0	5.2e-10	39.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|292656177|ref|YP_003536074.1|	-	0.00052	20.1	0.0	0.00094	19.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|292656177|ref|YP_003536074.1|	-	0.043	14.0	0.0	0.14	12.4	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.21	gi|292656178|ref|YP_003536075.1|	-	4.1e-14	52.6	0.1	1.2e-13	51.0	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292656178|ref|YP_003536075.1|	-	6.2e-06	26.1	0.0	4.2e-05	23.4	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|292656178|ref|YP_003536075.1|	-	0.0014	18.4	0.0	0.0017	18.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
NTP_transf_3	PF12804.2	gi|292656178|ref|YP_003536075.1|	-	0.074	13.1	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
DDE_Tnp_1	PF01609.16	gi|292656179|ref|YP_003536076.1|	-	2.7e-27	95.7	0.0	3.6e-27	95.3	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|292656179|ref|YP_003536076.1|	-	0.0048	17.0	0.0	0.013	15.6	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292656179|ref|YP_003536076.1|	-	0.0051	15.8	0.1	0.012	14.6	0.1	1.5	2	0	0	2	2	2	1	Archaeal	putative	transposase	ISC1217
DUF2249	PF10006.4	gi|292656179|ref|YP_003536076.1|	-	0.05	13.1	0.1	0.21	11.1	0.1	2.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
CcmD	PF04995.9	gi|292656179|ref|YP_003536076.1|	-	1.4	8.7	4.1	0.37	10.5	0.3	2.0	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
Glycos_transf_1	PF00534.15	gi|292656181|ref|YP_003536078.1|	-	5.6e-19	68.2	0.0	8.5e-19	67.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|292656181|ref|YP_003536078.1|	-	5.8e-17	62.1	0.0	1e-16	61.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|292656181|ref|YP_003536078.1|	-	6e-05	23.2	0.0	0.00011	22.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|292656181|ref|YP_003536078.1|	-	0.00091	19.4	0.0	0.002	18.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Epimerase_2	PF02350.14	gi|292656181|ref|YP_003536078.1|	-	0.03	13.0	0.0	0.052	12.3	0.0	1.4	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
Polysacc_synt_C	PF14667.1	gi|292656183|ref|YP_003536080.1|	-	2.2e-25	89.1	24.0	2.2e-25	89.1	16.6	3.4	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|292656183|ref|YP_003536080.1|	-	7.4e-22	77.8	48.1	2.6e-21	76.1	12.9	2.4	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|292656183|ref|YP_003536080.1|	-	3.1e-12	45.6	32.2	6.6e-12	44.5	22.3	1.5	1	1	0	1	1	1	1	MviN-like	protein
Polysacc_synt_3	PF13440.1	gi|292656183|ref|YP_003536080.1|	-	5e-11	42.5	19.4	5e-11	42.5	13.5	3.0	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.13	gi|292656183|ref|YP_003536080.1|	-	6.7e-09	35.5	13.8	6.7e-09	35.5	9.5	3.8	3	2	0	4	4	4	1	MatE
Bac_export_2	PF01312.14	gi|292656183|ref|YP_003536080.1|	-	1.1	8.0	13.5	0.86	8.4	6.8	2.3	2	1	0	2	2	2	0	FlhB	HrpN	YscU	SpaS	Family
dTDP_sugar_isom	PF00908.12	gi|292656184|ref|YP_003536081.1|	-	6.4e-14	51.6	0.0	8.6e-14	51.2	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.6	gi|292656184|ref|YP_003536081.1|	-	1.6e-06	27.6	0.0	2.3e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.6	gi|292656184|ref|YP_003536081.1|	-	0.013	14.9	0.3	0.16	11.4	0.2	2.1	1	1	0	1	1	1	0	Cupin	domain
NTP_transferase	PF00483.18	gi|292656185|ref|YP_003536082.1|	-	3e-56	190.4	0.0	3.6e-56	190.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|292656185|ref|YP_003536082.1|	-	8e-10	39.0	0.0	1e-09	38.6	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|292656185|ref|YP_003536082.1|	-	6e-08	31.8	5.3	0.00015	21.1	0.2	3.5	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.14	gi|292656185|ref|YP_003536082.1|	-	0.0016	18.0	0.0	0.003	17.1	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.1	gi|292656185|ref|YP_003536082.1|	-	0.014	14.9	8.4	1.1	8.9	0.2	4.0	4	0	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
RmlD_sub_bind	PF04321.12	gi|292656186|ref|YP_003536083.1|	-	1e-74	251.0	0.0	1.2e-74	250.8	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|292656186|ref|YP_003536083.1|	-	1.6e-27	96.4	0.0	2.3e-27	95.9	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|292656186|ref|YP_003536083.1|	-	3.3e-11	43.5	0.0	5.3e-11	42.8	0.0	1.4	1	1	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|292656186|ref|YP_003536083.1|	-	4.9e-11	42.0	0.0	3.5e-08	32.6	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
3Beta_HSD	PF01073.14	gi|292656186|ref|YP_003536083.1|	-	3.2e-09	35.9	0.0	6.7e-09	34.8	0.0	1.6	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|292656186|ref|YP_003536083.1|	-	1e-07	31.1	0.1	2.1e-06	26.8	0.1	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|292656186|ref|YP_003536083.1|	-	0.0011	18.9	2.9	0.018	14.9	2.0	2.2	1	1	0	1	1	1	1	short	chain	dehydrogenase
Saccharop_dh	PF03435.13	gi|292656186|ref|YP_003536083.1|	-	0.079	11.9	0.1	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_2	PF03446.10	gi|292656186|ref|YP_003536083.1|	-	0.12	12.1	0.0	1.7	8.4	0.0	2.1	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UPF0172	PF03665.8	gi|292656186|ref|YP_003536083.1|	-	0.15	11.5	0.0	11	5.5	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0172)
Epimerase	PF01370.16	gi|292656187|ref|YP_003536084.1|	-	3.8e-69	232.7	0.0	4.7e-69	232.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292656187|ref|YP_003536084.1|	-	1.3e-25	89.7	0.0	1.6e-25	89.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|292656187|ref|YP_003536084.1|	-	1.4e-23	83.1	0.0	1.6e-23	83.0	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|292656187|ref|YP_003536084.1|	-	1.6e-18	66.6	0.0	1.1e-17	63.8	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|292656187|ref|YP_003536084.1|	-	5.8e-18	64.7	0.0	1.3e-16	60.3	0.0	2.1	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|292656187|ref|YP_003536084.1|	-	3.9e-12	46.5	0.0	5.9e-12	45.9	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|292656187|ref|YP_003536084.1|	-	2e-06	27.8	0.3	2.1e-05	24.4	0.1	2.1	2	0	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|292656187|ref|YP_003536084.1|	-	2.8e-05	23.4	0.0	4.4e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|292656187|ref|YP_003536084.1|	-	0.0083	15.8	0.0	0.062	12.9	0.0	2.2	1	1	0	1	1	1	1	KR	domain
Saccharop_dh	PF03435.13	gi|292656187|ref|YP_003536084.1|	-	0.0083	15.1	0.1	0.013	14.5	0.0	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_3	PF03447.11	gi|292656187|ref|YP_003536084.1|	-	0.099	13.0	0.0	0.2	12.0	0.0	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|292656187|ref|YP_003536084.1|	-	0.1	12.5	0.2	0.41	10.5	0.0	2.1	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
NUDIX	PF00293.23	gi|292656188|ref|YP_003536085.1|	-	3.8e-12	46.0	0.1	4.5e-12	45.7	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|292656188|ref|YP_003536085.1|	-	0.09	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	NUDIX	domain
Glycos_transf_2	PF00535.21	gi|292656189|ref|YP_003536086.1|	-	1e-21	77.3	0.0	1.6e-21	76.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|292656189|ref|YP_003536086.1|	-	6.3e-10	39.2	0.0	8.7e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|292656189|ref|YP_003536086.1|	-	0.2	10.6	0.0	0.26	10.3	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF1628	PF07790.6	gi|292656190|ref|YP_003536087.1|	-	8e-25	87.4	3.3	8e-25	87.4	2.3	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1628)
DUF2029	PF09594.5	gi|292656193|ref|YP_003536090.1|	-	0.088	12.3	9.5	0.1	12.1	6.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2029)
Cytochrom_B_C	PF00032.12	gi|292656193|ref|YP_003536090.1|	-	0.11	12.7	2.4	0.16	12.1	1.7	1.3	1	0	0	1	1	1	0	Cytochrome	b(C-terminal)/b6/petD
DUF2231	PF09990.4	gi|292656193|ref|YP_003536090.1|	-	0.18	12.1	4.2	0.26	11.6	2.9	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2231)
TcpE	PF12648.2	gi|292656193|ref|YP_003536090.1|	-	0.47	10.6	2.8	0.55	10.3	1.9	1.1	1	0	0	1	1	1	0	TcpE	family
DUF962	PF06127.6	gi|292656193|ref|YP_003536090.1|	-	0.68	9.8	3.0	1.1	9.2	2.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF962)
CARDB	PF07705.6	gi|292656194|ref|YP_003536091.1|	-	6.2e-10	39.0	13.8	0.002	18.1	0.2	4.0	3	1	1	4	4	4	3	CARDB
Transglut_C	PF00927.17	gi|292656194|ref|YP_003536091.1|	-	3e-05	24.0	0.3	0.0061	16.5	0.0	2.7	3	0	0	3	3	3	1	Transglutaminase	family,	C-terminal	ig	like	domain
Tol_Tol_Ttg2	PF05494.7	gi|292656194|ref|YP_003536091.1|	-	0.0024	17.4	1.3	0.0068	15.9	0.1	2.2	2	1	0	2	2	2	1	Toluene	tolerance,	Ttg2
TRAP_beta	PF05753.9	gi|292656194|ref|YP_003536091.1|	-	0.023	13.8	5.4	0.24	10.5	0.3	2.9	3	0	0	3	3	3	0	Translocon-associated	protein	beta	(TRAPB)
NPCBM_assoc	PF10633.4	gi|292656194|ref|YP_003536091.1|	-	0.2	11.7	16.0	0.21	11.6	0.5	4.7	5	1	1	6	6	6	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF2892	PF11127.3	gi|292656194|ref|YP_003536091.1|	-	5.5	6.9	6.1	1.5	8.7	1.4	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
TetR_N	PF00440.18	gi|292656195|ref|YP_003536092.1|	-	1.6e-13	50.0	0.0	3e-13	49.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|292656195|ref|YP_003536092.1|	-	4.7e-09	36.2	0.0	1.1e-08	35.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	repressor
HTH_7	PF02796.10	gi|292656195|ref|YP_003536092.1|	-	6.3e-05	22.7	0.1	0.00012	21.8	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|292656195|ref|YP_003536092.1|	-	0.0013	18.3	0.0	0.0023	17.5	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|292656195|ref|YP_003536092.1|	-	0.002	17.7	0.0	0.0046	16.5	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_CodY	PF08222.6	gi|292656195|ref|YP_003536092.1|	-	0.0081	15.4	0.0	0.016	14.5	0.0	1.5	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_19	PF12844.2	gi|292656195|ref|YP_003536092.1|	-	0.012	15.5	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|292656195|ref|YP_003536092.1|	-	0.012	15.3	0.1	0.04	13.7	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix
HTH_38	PF13936.1	gi|292656195|ref|YP_003536092.1|	-	0.014	14.9	0.3	0.054	13.0	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656195|ref|YP_003536092.1|	-	0.02	14.2	0.1	0.057	12.8	0.0	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_1_2	PF13022.1	gi|292656195|ref|YP_003536092.1|	-	0.034	13.9	0.0	0.084	12.6	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.18	gi|292656195|ref|YP_003536092.1|	-	0.044	13.3	0.0	0.12	12.0	0.0	1.8	1	0	0	1	1	1	0	MerR	family	regulatory	protein
WHG	PF13305.1	gi|292656195|ref|YP_003536092.1|	-	0.046	14.2	0.0	0.73	10.4	0.0	2.6	2	1	1	3	3	3	0	WHG	domain
HTH_psq	PF05225.11	gi|292656195|ref|YP_003536092.1|	-	0.047	13.2	0.0	0.074	12.6	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_17	PF12728.2	gi|292656195|ref|YP_003536092.1|	-	0.083	13.1	0.0	0.74	10.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|292656195|ref|YP_003536092.1|	-	0.099	12.1	0.1	0.32	10.4	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
Tubulin	PF00091.20	gi|292656196|ref|YP_003536093.1|	-	4e-12	46.4	0.0	7.2e-12	45.5	0.0	1.4	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
MMPL	PF03176.10	gi|292656197|ref|YP_003536094.1|	-	2e-34	118.7	29.4	9.7e-18	63.9	6.7	2.3	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|292656197|ref|YP_003536094.1|	-	1.5e-12	47.2	8.9	2.6e-09	36.7	2.4	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|292656197|ref|YP_003536094.1|	-	2.6e-11	42.2	24.5	1.3e-09	36.6	6.6	2.4	2	1	0	2	2	2	2	Patched	family
CARDB	PF07705.6	gi|292656198|ref|YP_003536095.1|	-	4.9e-14	52.1	15.5	0.00059	19.8	0.0	4.7	4	1	0	4	4	4	4	CARDB
NPCBM_assoc	PF10633.4	gi|292656198|ref|YP_003536095.1|	-	4.5e-12	45.8	18.5	3.2e-05	23.8	0.0	6.7	4	4	1	5	5	5	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Transglut_C	PF00927.17	gi|292656198|ref|YP_003536095.1|	-	0.00046	20.1	0.1	2.9	7.9	0.0	3.8	3	1	0	3	3	3	2	Transglutaminase	family,	C-terminal	ig	like	domain
DUF11	PF01345.13	gi|292656198|ref|YP_003536095.1|	-	0.0012	18.8	4.1	0.0012	18.8	2.9	4.2	5	0	0	5	5	5	2	Domain	of	unknown	function	DUF11
A2M_N_2	PF07703.9	gi|292656198|ref|YP_003536095.1|	-	0.027	14.2	3.7	0.77	9.5	0.7	3.2	1	1	1	2	2	2	0	Alpha-2-macroglobulin	family	N-terminal	region
TRAP_alpha	PF03896.11	gi|292656198|ref|YP_003536095.1|	-	0.044	12.7	0.4	4.8	6.0	0.0	2.7	3	0	0	3	3	3	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Filamin	PF00630.14	gi|292656199|ref|YP_003536096.1|	-	0.012	16.1	0.2	0.37	11.3	0.0	2.7	2	1	0	2	2	2	0	Filamin/ABP280	repeat
T2SN	PF01203.14	gi|292656199|ref|YP_003536096.1|	-	0.016	14.8	0.0	0.055	13.0	0.0	1.9	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	N
A2M_N	PF01835.14	gi|292656200|ref|YP_003536097.1|	-	0.0044	17.2	5.7	0.97	9.7	0.4	4.7	5	1	0	5	5	5	2	MG2	domain
TrmB	PF01978.14	gi|292656201|ref|YP_003536098.1|	-	7.3e-19	67.2	0.0	1.7e-18	66.0	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|292656201|ref|YP_003536098.1|	-	0.00024	20.8	0.1	0.0018	18.0	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656201|ref|YP_003536098.1|	-	0.0014	18.2	0.0	0.0034	16.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292656201|ref|YP_003536098.1|	-	0.0039	16.7	0.2	0.015	14.8	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_9	PF08221.6	gi|292656201|ref|YP_003536098.1|	-	0.04	13.8	0.0	0.088	12.6	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|292656201|ref|YP_003536098.1|	-	0.074	13.1	0.0	0.44	10.6	0.0	1.9	1	1	1	2	2	2	0	Penicillinase	repressor
FixG_C	PF11614.3	gi|292656203|ref|YP_003536100.1|	-	0.01	15.9	0.2	0.67	10.0	0.0	2.4	1	1	1	2	2	2	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
RNA_GG_bind	PF10258.4	gi|292656203|ref|YP_003536100.1|	-	0.021	14.5	0.0	0.044	13.4	0.0	1.5	1	0	0	1	1	1	0	PHAX	RNA-binding	domain
CARDB	PF07705.6	gi|292656203|ref|YP_003536100.1|	-	0.085	12.9	1.4	3.6	7.7	0.2	2.1	2	0	0	2	2	2	0	CARDB
OrfB_IS605	PF01385.14	gi|292656204|ref|YP_003536101.1|	-	7e-40	136.8	0.0	9.5e-40	136.3	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|292656204|ref|YP_003536101.1|	-	2e-18	65.7	1.7	5.1e-18	64.4	1.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656204|ref|YP_003536101.1|	-	0.00028	20.6	0.6	0.00084	19.0	0.4	1.8	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292656204|ref|YP_003536101.1|	-	0.23	10.8	3.1	0.68	9.2	2.2	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|292656204|ref|YP_003536101.1|	-	0.36	10.3	2.2	0.96	9.0	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_3	PF07649.7	gi|292656204|ref|YP_003536101.1|	-	2.1	8.4	5.1	1.1	9.3	1.5	2.1	2	0	0	2	2	2	0	C1-like	domain
RIP	PF00161.14	gi|292656205|ref|YP_003536102.1|	-	0.0084	15.3	0.1	0.01	15.0	0.1	1.1	1	0	0	1	1	1	1	Ribosome	inactivating	protein
fn3	PF00041.16	gi|292656205|ref|YP_003536102.1|	-	0.1	12.7	0.2	0.62	10.2	0.0	2.0	2	0	0	2	2	2	0	Fibronectin	type	III	domain
CARDB	PF07705.6	gi|292656205|ref|YP_003536102.1|	-	0.13	12.3	0.3	0.27	11.3	0.1	1.5	1	1	0	1	1	1	0	CARDB
EF-1_beta_acid	PF10587.4	gi|292656205|ref|YP_003536102.1|	-	0.21	11.7	0.8	0.36	11.0	0.6	1.4	1	0	0	1	1	1	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
bPH_2	PF03703.9	gi|292656206|ref|YP_003536103.1|	-	2.4e-07	30.6	0.0	4.3e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
CopD	PF05425.8	gi|292656206|ref|YP_003536103.1|	-	0.011	15.8	1.4	0.022	14.9	1.0	1.5	1	0	0	1	1	1	0	Copper	resistance	protein	D
DUF3180	PF11377.3	gi|292656206|ref|YP_003536103.1|	-	0.018	14.9	0.8	0.03	14.1	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3180)
DUF202	PF02656.10	gi|292656206|ref|YP_003536103.1|	-	0.19	11.9	7.7	0.6	10.3	1.1	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Tetraspannin	PF00335.15	gi|292656206|ref|YP_003536103.1|	-	0.83	8.8	3.1	1.7	7.8	2.1	1.4	1	0	0	1	1	1	0	Tetraspanin	family
MMPL	PF03176.10	gi|292656207|ref|YP_003536104.1|	-	3.5e-48	164.0	15.6	1.4e-26	93.0	4.7	2.4	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|292656207|ref|YP_003536104.1|	-	6e-11	42.0	0.0	6e-11	42.0	0.0	3.8	3	2	2	5	5	5	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
ACR_tran	PF00873.14	gi|292656207|ref|YP_003536104.1|	-	6.2e-09	33.8	9.4	6.7e-05	20.5	1.4	2.2	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
Patched	PF02460.13	gi|292656207|ref|YP_003536104.1|	-	2.6e-06	25.7	5.6	8.8e-05	20.6	0.4	3.0	3	0	0	3	3	3	2	Patched	family
Wzy_C	PF04932.10	gi|292656207|ref|YP_003536104.1|	-	0.061	13.1	17.0	3.4	7.4	0.2	4.8	4	2	1	5	5	5	0	O-Antigen	ligase
DUF2368	PF10166.4	gi|292656207|ref|YP_003536104.1|	-	0.1	12.1	1.4	0.32	10.5	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2368)
OAD_gamma	PF04277.8	gi|292656207|ref|YP_003536104.1|	-	5.3	7.4	12.1	20	5.6	0.8	4.3	4	0	0	4	4	4	0	Oxaloacetate	decarboxylase,	gamma	chain
CARDB	PF07705.6	gi|292656208|ref|YP_003536105.1|	-	1.3e-15	57.2	15.9	1.2e-05	25.2	0.9	4.2	5	0	0	5	5	5	3	CARDB
NPCBM_assoc	PF10633.4	gi|292656208|ref|YP_003536105.1|	-	3.4e-14	52.6	23.8	0.00038	20.4	1.2	5.9	4	2	0	4	4	4	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Fn3-like	PF14310.1	gi|292656208|ref|YP_003536105.1|	-	0.001	18.9	3.4	4.5	7.2	0.0	5.3	7	0	0	7	7	7	2	Fibronectin	type	III-like	domain
DUF4621	PF15414.1	gi|292656208|ref|YP_003536105.1|	-	0.0052	15.5	0.1	0.078	11.6	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4621)
Lipocalin_6	PF13944.1	gi|292656208|ref|YP_003536105.1|	-	0.78	9.8	7.3	7.2	6.7	0.0	4.2	4	2	0	5	5	5	0	Lipocalin-like	domain
Beta_helix	PF13229.1	gi|292656209|ref|YP_003536106.1|	-	3.6e-28	98.3	19.2	6.7e-10	38.9	1.5	5.6	3	1	2	5	5	5	4	Right	handed	beta	helix	region
NosD	PF05048.8	gi|292656209|ref|YP_003536106.1|	-	3.5e-14	52.5	16.6	2.8e-10	39.7	3.0	4.5	3	1	1	4	4	4	2	Periplasmic	copper-binding	protein	(NosD)
DUF2808	PF10989.3	gi|292656209|ref|YP_003536106.1|	-	0.037	13.6	0.2	0.8	9.3	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2808)
CARDB	PF07705.6	gi|292656210|ref|YP_003536107.1|	-	5.2e-09	36.0	10.1	0.00044	20.2	0.0	3.9	3	1	1	4	4	4	3	CARDB
DUF11	PF01345.13	gi|292656210|ref|YP_003536107.1|	-	0.0055	16.7	12.7	0.34	10.9	1.5	3.8	3	1	0	3	3	3	2	Domain	of	unknown	function	DUF11
DUF2393	PF09624.5	gi|292656210|ref|YP_003536107.1|	-	0.35	10.4	2.0	5.8	6.4	0.0	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2393)
ABC_tran	PF00005.22	gi|292656211|ref|YP_003536108.1|	-	1.8e-37	128.7	0.0	2.6e-37	128.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656211|ref|YP_003536108.1|	-	4.7e-11	43.1	0.0	3.9e-05	23.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292656211|ref|YP_003536108.1|	-	2.7e-06	26.7	0.0	0.013	14.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292656211|ref|YP_003536108.1|	-	8e-06	25.2	0.1	1.4e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|292656211|ref|YP_003536108.1|	-	6.4e-05	23.0	0.1	0.0001	22.3	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656211|ref|YP_003536108.1|	-	8.2e-05	22.7	0.4	0.00031	20.8	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292656211|ref|YP_003536108.1|	-	0.001	18.5	0.3	0.015	14.7	0.1	2.1	2	0	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|292656211|ref|YP_003536108.1|	-	0.0013	17.9	0.0	0.002	17.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|292656211|ref|YP_003536108.1|	-	0.0017	18.7	0.0	0.0028	18.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292656211|ref|YP_003536108.1|	-	0.0046	17.7	0.3	0.0069	17.2	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292656211|ref|YP_003536108.1|	-	0.0046	16.3	0.0	0.067	12.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|292656211|ref|YP_003536108.1|	-	0.0067	15.5	0.0	1	8.3	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292656211|ref|YP_003536108.1|	-	0.017	15.2	0.4	2.6	8.2	0.1	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|292656211|ref|YP_003536108.1|	-	0.024	14.5	0.3	0.031	14.1	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|292656211|ref|YP_003536108.1|	-	0.03	13.9	0.1	0.13	11.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|292656211|ref|YP_003536108.1|	-	0.073	12.7	0.1	0.43	10.2	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
TerD	PF02342.13	gi|292656211|ref|YP_003536108.1|	-	0.073	12.3	0.1	0.087	12.1	0.0	1.3	1	0	0	1	1	1	0	TerD	domain
AAA_14	PF13173.1	gi|292656211|ref|YP_003536108.1|	-	0.078	12.8	0.0	0.19	11.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|292656211|ref|YP_003536108.1|	-	0.081	12.8	0.0	0.25	11.3	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.1	gi|292656211|ref|YP_003536108.1|	-	0.093	13.0	1.3	0.27	11.5	0.9	2.0	1	1	0	1	1	1	0	AAA	domain
G-alpha	PF00503.15	gi|292656211|ref|YP_003536108.1|	-	0.095	11.3	0.0	0.097	11.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
FtsK_SpoIIIE	PF01580.13	gi|292656211|ref|YP_003536108.1|	-	0.098	12.1	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
IstB_IS21	PF01695.12	gi|292656211|ref|YP_003536108.1|	-	0.099	12.0	0.0	0.23	10.8	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|292656211|ref|YP_003536108.1|	-	0.13	11.9	0.3	0.29	10.8	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MacB_PCD	PF12704.2	gi|292656212|ref|YP_003536109.1|	-	1.1e-25	90.5	2.9	1.1e-25	90.5	2.0	2.1	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|292656212|ref|YP_003536109.1|	-	8.4e-19	67.5	11.2	1.8e-18	66.4	5.4	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
UbiA	PF01040.13	gi|292656213|ref|YP_003536110.1|	-	1.3e-11	44.2	15.6	2e-11	43.6	10.8	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF3611	PF12263.3	gi|292656213|ref|YP_003536110.1|	-	0.15	11.4	5.0	0.24	10.7	0.2	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3611)
HATPase_c	PF02518.21	gi|292656214|ref|YP_003536111.1|	-	5.4e-14	51.8	0.0	1.2e-13	50.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292656214|ref|YP_003536111.1|	-	2.2e-10	40.4	0.0	4.9e-10	39.2	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
BioY	PF02632.9	gi|292656214|ref|YP_003536111.1|	-	0.00037	20.1	9.1	0.0006	19.4	6.3	1.3	1	0	0	1	1	1	1	BioY	family
HATPase_c_3	PF13589.1	gi|292656214|ref|YP_003536111.1|	-	0.0005	19.7	0.0	0.00097	18.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|292656214|ref|YP_003536111.1|	-	0.0015	18.5	0.0	0.017	15.1	0.0	2.5	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|292656214|ref|YP_003536111.1|	-	0.0025	18.1	0.1	0.014	15.7	0.0	2.2	1	1	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|292656214|ref|YP_003536111.1|	-	0.0087	15.8	0.1	0.2	11.4	0.1	2.4	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|292656214|ref|YP_003536111.1|	-	0.015	15.1	0.0	0.042	13.7	0.0	1.7	1	0	0	1	1	1	0	PAS	domain
HisKA	PF00512.20	gi|292656214|ref|YP_003536111.1|	-	0.02	14.8	0.0	0.042	13.8	0.0	1.6	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
Glyco_hydro_3	PF00933.16	gi|292656215|ref|YP_003536112.1|	-	1.5e-84	283.5	0.0	2.7e-84	282.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|292656215|ref|YP_003536112.1|	-	1.9e-58	197.6	1.1	3.9e-58	196.6	0.8	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|292656215|ref|YP_003536112.1|	-	1.5e-15	56.8	0.0	3.2e-15	55.7	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Glyco_hydro_3	PF00933.16	gi|292656216|ref|YP_003536113.1|	-	1.4e-76	257.3	0.0	1.9e-76	256.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|292656216|ref|YP_003536113.1|	-	5.2e-54	183.1	0.0	2.3e-53	181.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|292656216|ref|YP_003536113.1|	-	1.3e-18	66.7	0.5	3e-18	65.5	0.0	1.9	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF4232	PF14016.1	gi|292656216|ref|YP_003536113.1|	-	0.00059	19.5	1.7	0.0011	18.5	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4232)
CARDB	PF07705.6	gi|292656216|ref|YP_003536113.1|	-	0.027	14.5	0.1	0.057	13.4	0.0	1.5	1	0	0	1	1	1	0	CARDB
DUF11	PF01345.13	gi|292656216|ref|YP_003536113.1|	-	0.059	13.4	5.5	0.27	11.2	0.7	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF11
Leucyl-specific	PF14795.1	gi|292656217|ref|YP_003536114.1|	-	0.0037	17.1	0.2	0.0058	16.4	0.1	1.3	1	0	0	1	1	1	1	Leucine-tRNA	synthetase-specific	domain
WD-3	PF09765.4	gi|292656217|ref|YP_003536114.1|	-	0.11	11.7	0.0	0.15	11.3	0.0	1.1	1	0	0	1	1	1	0	WD-repeat	region
Aminotran_3	PF00202.16	gi|292656218|ref|YP_003536115.1|	-	1.2e-72	244.6	0.0	4.8e-72	242.6	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|292656218|ref|YP_003536115.1|	-	0.0017	17.5	0.0	0.0026	16.9	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Bac_thur_toxin	PF01338.13	gi|292656218|ref|YP_003536115.1|	-	0.087	12.0	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	Bacillus	thuringiensis	toxin
IclR	PF01614.13	gi|292656219|ref|YP_003536116.1|	-	3.1e-33	114.1	0.0	4.8e-33	113.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|292656219|ref|YP_003536116.1|	-	1.6e-08	33.9	0.0	4.4e-08	32.5	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656219|ref|YP_003536116.1|	-	3.3e-07	29.8	0.0	1.4e-06	27.8	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292656219|ref|YP_003536116.1|	-	3.1e-06	26.4	0.0	5.3e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292656219|ref|YP_003536116.1|	-	4.2e-06	26.3	0.0	1.2e-05	24.8	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|292656219|ref|YP_003536116.1|	-	0.00043	20.5	0.1	0.0017	18.6	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|292656219|ref|YP_003536116.1|	-	0.00046	19.9	0.0	0.0013	18.5	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656219|ref|YP_003536116.1|	-	0.0044	16.6	0.0	0.014	15.0	0.0	1.9	1	0	0	1	1	1	1	HTH	domain
FeoC	PF09012.5	gi|292656219|ref|YP_003536116.1|	-	0.0059	16.2	0.0	0.013	15.1	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_41	PF14502.1	gi|292656219|ref|YP_003536116.1|	-	0.019	14.5	0.0	0.077	12.6	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|292656219|ref|YP_003536116.1|	-	0.019	15.0	0.0	0.034	14.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292656219|ref|YP_003536116.1|	-	0.02	14.6	0.0	0.049	13.3	0.0	1.8	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.7	gi|292656219|ref|YP_003536116.1|	-	0.033	13.7	0.0	0.11	12.0	0.0	1.9	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292656219|ref|YP_003536116.1|	-	0.099	12.7	0.0	0.22	11.6	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
Na_H_antiporter	PF03553.9	gi|292656220|ref|YP_003536117.1|	-	1.1e-54	185.5	43.8	8.1e-52	176.1	16.3	2.0	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Peripla_BP_2	PF01497.13	gi|292656221|ref|YP_003536118.1|	-	4.2e-17	62.0	0.0	6.2e-15	54.9	0.0	2.1	1	1	1	2	2	2	2	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|292656221|ref|YP_003536118.1|	-	0.0076	16.1	0.0	0.017	15.1	0.0	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ADH_zinc_N	PF00107.21	gi|292656222|ref|YP_003536119.1|	-	3.9e-16	58.7	0.1	6.2e-16	58.1	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|292656222|ref|YP_003536119.1|	-	3.4e-09	37.6	0.1	6.2e-09	36.8	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.1	gi|292656223|ref|YP_003536120.1|	-	1.9e-36	125.7	0.4	2.3e-36	125.4	0.2	1.0	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292656223|ref|YP_003536120.1|	-	1.4e-12	47.5	0.0	2e-12	47.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292656223|ref|YP_003536120.1|	-	5.1e-09	35.2	0.0	7.7e-09	34.6	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.8	gi|292656223|ref|YP_003536120.1|	-	2.4e-07	30.2	0.0	5.7e-07	29.0	0.0	1.7	1	1	0	1	1	1	1	NmrA-like	family
ApbA	PF02558.11	gi|292656223|ref|YP_003536120.1|	-	0.00082	18.8	0.0	0.0014	18.0	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Semialdhyde_dh	PF01118.19	gi|292656223|ref|YP_003536120.1|	-	0.0012	19.1	0.1	0.0024	18.1	0.1	1.6	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Polysacc_synt_2	PF02719.10	gi|292656223|ref|YP_003536120.1|	-	0.0023	16.9	0.0	0.086	11.7	0.0	2.2	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|292656223|ref|YP_003536120.1|	-	0.01	15.7	1.1	1.2	9.0	0.1	2.5	2	1	1	3	3	3	0	short	chain	dehydrogenase
KR	PF08659.5	gi|292656223|ref|YP_003536120.1|	-	0.013	15.1	0.1	4.7	6.8	0.0	2.2	1	1	1	2	2	2	0	KR	domain
RmlD_sub_bind	PF04321.12	gi|292656223|ref|YP_003536120.1|	-	0.041	12.7	0.0	0.12	11.2	0.0	1.7	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
Ldh_1_N	PF00056.18	gi|292656223|ref|YP_003536120.1|	-	0.069	12.9	0.5	1.3	8.8	0.4	2.2	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|292656223|ref|YP_003536120.1|	-	0.087	12.8	0.0	0.19	11.7	0.0	1.7	1	0	0	1	1	1	0	TrkA-N	domain
DapB_N	PF01113.15	gi|292656223|ref|YP_003536120.1|	-	0.088	12.7	0.1	0.15	11.9	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
MFS_1	PF07690.11	gi|292656224|ref|YP_003536121.1|	-	6.5e-49	166.5	93.0	2.6e-35	121.7	37.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|292656224|ref|YP_003536121.1|	-	1.6e-05	23.7	42.8	2.7e-05	22.9	11.2	2.5	2	2	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.2	gi|292656224|ref|YP_003536121.1|	-	0.22	11.3	8.5	0.39	10.5	0.1	4.0	3	1	1	4	4	4	0	MFS_1	like	family
DUF898	PF05987.8	gi|292656225|ref|YP_003536122.1|	-	0.047	12.5	0.4	0.043	12.6	0.3	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
Dioxygenase_C	PF00775.16	gi|292656226|ref|YP_003536123.1|	-	6e-17	61.4	0.2	8.4e-16	57.7	0.2	2.2	1	1	0	1	1	1	1	Dioxygenase
PTS-HPr	PF00381.14	gi|292656228|ref|YP_003536125.1|	-	2.4e-28	97.8	0.3	2.8e-28	97.6	0.2	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PTS_EIIA_2	PF00359.17	gi|292656229|ref|YP_003536126.1|	-	3.2e-19	69.0	0.0	3.9e-19	68.8	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
SLT_L	PF14718.1	gi|292656229|ref|YP_003536126.1|	-	0.13	12.0	0.6	0.28	10.9	0.1	1.7	2	0	0	2	2	2	0	Soluble	lytic	murein	transglycosylase	L	domain
EIIC-GAT	PF03611.9	gi|292656230|ref|YP_003536127.1|	-	2.3e-72	244.0	37.9	2.9e-72	243.7	26.3	1.1	1	0	0	1	1	1	1	PTS	system	sugar-specific	permease	component
PTS_IIB	PF02302.12	gi|292656231|ref|YP_003536128.1|	-	1.8e-12	47.5	0.1	2.1e-12	47.3	0.1	1.1	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
TIM	PF00121.13	gi|292656232|ref|YP_003536129.1|	-	1.6e-13	50.2	0.0	1.3e-11	44.0	0.0	2.1	1	1	1	2	2	2	2	Triosephosphate	isomerase
B12-binding	PF02310.14	gi|292656232|ref|YP_003536129.1|	-	0.017	14.9	0.1	0.076	12.8	0.0	2.0	2	0	0	2	2	2	0	B12	binding	domain
His_biosynth	PF00977.16	gi|292656232|ref|YP_003536129.1|	-	0.029	13.6	0.0	0.098	11.9	0.0	1.8	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
DeoC	PF01791.4	gi|292656233|ref|YP_003536130.1|	-	5.2e-25	88.1	0.0	6.3e-25	87.8	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
UPF0047	PF01894.12	gi|292656234|ref|YP_003536131.1|	-	1.2e-29	102.5	0.0	1.4e-29	102.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
IclR	PF01614.13	gi|292656235|ref|YP_003536132.1|	-	7.1e-35	119.5	0.0	1.2e-34	118.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|292656235|ref|YP_003536132.1|	-	1.3e-13	50.2	0.3	6e-13	48.1	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656235|ref|YP_003536132.1|	-	2.3e-07	30.3	0.1	1.1e-06	28.2	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|292656235|ref|YP_003536132.1|	-	2.8e-07	29.7	0.0	4.7e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292656235|ref|YP_003536132.1|	-	4.9e-07	29.3	0.0	1.2e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656235|ref|YP_003536132.1|	-	7.2e-06	25.7	0.2	1.8e-05	24.4	0.0	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|292656235|ref|YP_003536132.1|	-	8.4e-06	25.3	0.0	1.8e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|292656235|ref|YP_003536132.1|	-	5.1e-05	22.8	0.1	0.0003	20.3	0.0	2.3	2	1	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|292656235|ref|YP_003536132.1|	-	0.00033	20.3	0.1	0.0021	17.7	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_1	PF00126.22	gi|292656235|ref|YP_003536132.1|	-	0.0023	17.6	0.1	0.0053	16.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_38	PF13936.1	gi|292656235|ref|YP_003536132.1|	-	0.0047	16.4	0.0	0.01	15.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292656235|ref|YP_003536132.1|	-	0.0061	16.0	0.0	0.016	14.7	0.0	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292656235|ref|YP_003536132.1|	-	0.012	15.5	0.0	0.17	11.8	0.0	2.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|292656235|ref|YP_003536132.1|	-	0.031	14.0	0.0	0.67	9.7	0.0	2.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_10	PF04967.7	gi|292656235|ref|YP_003536132.1|	-	0.034	13.7	0.0	0.072	12.6	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_9	PF08221.6	gi|292656235|ref|YP_003536132.1|	-	0.045	13.6	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292656235|ref|YP_003536132.1|	-	0.05	13.1	0.1	0.31	10.5	0.0	2.2	1	1	1	2	2	2	0	DeoR-like	helix-turn-helix	domain
GntR	PF00392.16	gi|292656235|ref|YP_003536132.1|	-	0.065	12.6	0.1	0.21	11.0	0.0	1.9	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.12	gi|292656235|ref|YP_003536132.1|	-	0.095	12.2	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_Tnp_ISL3	PF13542.1	gi|292656235|ref|YP_003536132.1|	-	0.11	11.6	0.1	0.24	10.6	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.1	gi|292656235|ref|YP_003536132.1|	-	0.11	12.4	0.0	0.66	10.0	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
UPF0270	PF06794.7	gi|292656235|ref|YP_003536132.1|	-	0.13	11.9	0.1	0.79	9.5	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0270)
FGGY_N	PF00370.16	gi|292656236|ref|YP_003536133.1|	-	5.4e-12	45.5	0.0	1e-11	44.6	0.0	1.5	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|292656236|ref|YP_003536133.1|	-	5.1e-08	32.7	0.0	1e-07	31.7	0.0	1.5	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
IclR	PF01614.13	gi|292656237|ref|YP_003536134.1|	-	3.9e-28	97.7	0.0	1.2e-27	96.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|292656237|ref|YP_003536134.1|	-	1.4e-12	46.9	0.1	3.3e-12	45.7	0.1	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656237|ref|YP_003536134.1|	-	7.5e-08	31.9	0.0	4.1e-07	29.5	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|292656237|ref|YP_003536134.1|	-	4.6e-07	29.4	0.3	1e-06	28.3	0.2	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|292656237|ref|YP_003536134.1|	-	2e-05	23.9	0.0	5e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|292656237|ref|YP_003536134.1|	-	8.2e-05	22.3	0.1	0.00017	21.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|292656237|ref|YP_003536134.1|	-	0.00027	20.9	0.0	0.00058	19.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Mga	PF08280.6	gi|292656237|ref|YP_003536134.1|	-	0.0025	17.5	0.0	0.0055	16.4	0.0	1.6	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_11	PF08279.7	gi|292656237|ref|YP_003536134.1|	-	0.0082	15.7	0.0	0.11	12.1	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_AsnC-type	PF13404.1	gi|292656237|ref|YP_003536134.1|	-	0.027	14.0	0.1	0.092	12.3	0.0	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_40	PF14493.1	gi|292656237|ref|YP_003536134.1|	-	0.035	14.3	0.0	0.096	12.9	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF742	PF05331.6	gi|292656237|ref|YP_003536134.1|	-	0.052	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Rho_GDI	PF02115.12	gi|292656237|ref|YP_003536134.1|	-	0.1	12.0	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	RHO	protein	GDP	dissociation	inhibitor
Sulfolobus_pRN	PF05584.6	gi|292656237|ref|YP_003536134.1|	-	0.13	12.1	0.1	0.31	11.0	0.1	1.7	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
PdxA	PF04166.7	gi|292656238|ref|YP_003536135.1|	-	3.7e-99	331.7	0.5	4.4e-99	331.4	0.4	1.0	1	0	0	1	1	1	1	Pyridoxal	phosphate	biosynthetic	protein	PdxA
DUF1537	PF07005.6	gi|292656239|ref|YP_003536136.1|	-	1.9e-26	93.1	13.1	1.9e-26	93.1	9.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF1537
SBP_bac_8	PF13416.1	gi|292656240|ref|YP_003536137.1|	-	2.5e-13	50.3	0.0	5.7e-13	49.2	0.0	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292656240|ref|YP_003536137.1|	-	4.1e-09	36.5	0.0	1.2e-08	35.0	0.0	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
DUF830	PF05708.7	gi|292656240|ref|YP_003536137.1|	-	0.0036	17.2	0.0	0.016	15.1	0.0	1.9	1	1	0	1	1	1	1	Orthopoxvirus	protein	of	unknown	function	(DUF830)
Gly-zipper_OmpA	PF13436.1	gi|292656240|ref|YP_003536137.1|	-	0.0057	16.2	6.5	0.01	15.4	4.5	1.4	1	0	0	1	1	1	1	Glycine-zipper	containing	OmpA-like	membrane	domain
Serglycin	PF04360.7	gi|292656240|ref|YP_003536137.1|	-	0.014	15.0	3.4	0.039	13.6	2.3	1.7	1	0	0	1	1	1	0	Serglycin
DHDPS	PF00701.17	gi|292656241|ref|YP_003536138.1|	-	1.7e-48	164.6	0.0	1.9e-48	164.5	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF4341	PF14241.1	gi|292656241|ref|YP_003536138.1|	-	0.024	14.3	0.1	0.15	11.7	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4341)
Aldo_ket_red	PF00248.16	gi|292656242|ref|YP_003536139.1|	-	2.2e-66	223.5	0.0	2.6e-66	223.3	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
BPD_transp_1	PF00528.17	gi|292656243|ref|YP_003536140.1|	-	7.9e-23	80.9	17.8	7.9e-23	80.9	12.3	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
RAB3GAP2_N	PF14655.1	gi|292656243|ref|YP_003536140.1|	-	0.062	12.3	0.1	0.089	11.7	0.1	1.2	1	0	0	1	1	1	0	Rab3	GTPase-activating	protein	regulatory	subunit	N-terminus
BPD_transp_1	PF00528.17	gi|292656244|ref|YP_003536141.1|	-	4.1e-14	52.5	19.8	4.1e-14	52.5	13.7	2.1	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|292656245|ref|YP_003536142.1|	-	1.6e-30	106.2	0.0	2.6e-30	105.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|292656245|ref|YP_003536142.1|	-	7.8e-09	35.4	2.5	2.2e-08	33.9	0.1	2.4	1	1	1	2	2	2	1	TOBE	domain
AAA_21	PF13304.1	gi|292656245|ref|YP_003536142.1|	-	1.5e-05	25.1	0.0	0.19	11.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|292656245|ref|YP_003536142.1|	-	0.0013	18.8	3.6	0.074	13.1	0.8	2.4	2	0	0	2	2	2	1	TOBE	domain
AAA	PF00004.24	gi|292656245|ref|YP_003536142.1|	-	0.0031	17.7	0.1	0.014	15.6	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|292656245|ref|YP_003536142.1|	-	0.0045	17.3	0.8	0.0045	17.3	0.5	1.9	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292656245|ref|YP_003536142.1|	-	0.0046	16.9	0.1	0.009	16.0	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|292656245|ref|YP_003536142.1|	-	0.0094	15.4	0.1	0.021	14.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|292656245|ref|YP_003536142.1|	-	0.029	13.5	0.0	0.05	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|292656245|ref|YP_003536142.1|	-	0.034	14.3	0.0	0.085	13.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|292656245|ref|YP_003536142.1|	-	0.054	12.5	0.2	4.1	6.3	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
His_biosynth	PF00977.16	gi|292656245|ref|YP_003536142.1|	-	0.056	12.7	0.1	0.097	11.9	0.0	1.3	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
AAA_25	PF13481.1	gi|292656245|ref|YP_003536142.1|	-	0.058	12.8	0.0	0.16	11.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|292656245|ref|YP_003536142.1|	-	0.19	10.3	0.0	0.24	10.0	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
BNR_2	PF13088.1	gi|292656247|ref|YP_003536144.1|	-	1.6e-18	66.9	0.2	3.9e-18	65.7	0.1	1.5	1	1	1	2	2	2	2	BNR	repeat-like	domain
BNR_3	PF13859.1	gi|292656247|ref|YP_003536144.1|	-	8.4e-08	31.6	0.0	1.4e-07	30.9	0.0	1.3	1	0	0	1	1	1	1	BNR	repeat-like	domain
BNR	PF02012.15	gi|292656247|ref|YP_003536144.1|	-	1.9e-07	29.8	32.9	0.12	12.2	0.1	6.7	7	0	0	7	7	7	5	BNR/Asp-box	repeat
ABC_tran	PF00005.22	gi|292656249|ref|YP_003536146.1|	-	4.5e-33	114.4	0.0	6.5e-33	113.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292656249|ref|YP_003536146.1|	-	4.7e-20	71.7	0.6	8e-20	70.9	0.4	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292656249|ref|YP_003536146.1|	-	4.4e-07	30.1	0.1	5.5e-05	23.2	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292656249|ref|YP_003536146.1|	-	1.8e-05	24.8	0.6	0.00046	20.3	0.4	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|292656249|ref|YP_003536146.1|	-	0.0015	17.9	0.2	0.0028	17.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|292656249|ref|YP_003536146.1|	-	0.0049	16.8	3.5	0.022	14.7	2.3	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292656249|ref|YP_003536146.1|	-	0.016	15.4	0.0	0.13	12.5	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|292656249|ref|YP_003536146.1|	-	0.044	12.6	0.4	0.082	11.7	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
AAA_33	PF13671.1	gi|292656249|ref|YP_003536146.1|	-	0.085	12.7	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.21	gi|292656249|ref|YP_003536146.1|	-	0.087	12.2	0.1	2.4	7.5	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AIG1	PF04548.11	gi|292656249|ref|YP_003536146.1|	-	0.11	11.6	0.0	0.17	10.9	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
MobB	PF03205.9	gi|292656249|ref|YP_003536146.1|	-	0.12	12.1	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|292656249|ref|YP_003536146.1|	-	0.15	11.4	0.5	1.1	8.6	0.2	2.3	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|292656250|ref|YP_003536147.1|	-	5.1e-26	91.5	0.0	7e-26	91.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292656250|ref|YP_003536147.1|	-	7.9e-23	80.5	0.3	1.6e-22	79.6	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292656250|ref|YP_003536147.1|	-	2.5e-09	37.5	0.0	3.6e-08	33.7	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|292656250|ref|YP_003536147.1|	-	0.00039	19.8	0.0	0.07	12.5	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292656250|ref|YP_003536147.1|	-	0.002	17.3	0.0	0.0032	16.7	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|292656250|ref|YP_003536147.1|	-	0.0027	16.8	0.0	0.0069	15.4	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292656250|ref|YP_003536147.1|	-	0.025	14.0	0.3	0.15	11.5	0.1	2.1	1	1	1	2	2	2	0	AAA-like	domain
AAA_22	PF13401.1	gi|292656250|ref|YP_003536147.1|	-	0.045	13.9	0.7	0.85	9.7	0.5	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|292656250|ref|YP_003536147.1|	-	0.075	12.5	0.1	0.13	11.7	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP-synt_ab	PF00006.20	gi|292656250|ref|YP_003536147.1|	-	0.098	12.1	0.1	0.31	10.4	0.1	1.7	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF87	PF01935.12	gi|292656250|ref|YP_003536147.1|	-	0.2	11.4	0.2	0.46	10.2	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
BPD_transp_1	PF00528.17	gi|292656251|ref|YP_003536148.1|	-	8.6e-33	113.4	5.5	8.6e-33	113.4	3.8	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|292656251|ref|YP_003536148.1|	-	1.1e-11	43.9	4.6	1.4e-11	43.5	0.0	3.1	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
FtsX	PF02687.16	gi|292656251|ref|YP_003536148.1|	-	6.4	6.5	16.5	0.77	9.5	2.8	3.2	3	1	0	3	3	3	0	FtsX-like	permease	family
BPD_transp_1	PF00528.17	gi|292656252|ref|YP_003536149.1|	-	6e-38	130.2	10.5	6e-38	130.2	7.3	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3561	PF12084.3	gi|292656252|ref|YP_003536149.1|	-	0.86	9.4	4.7	0.39	10.5	0.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3561)
RDD	PF06271.7	gi|292656252|ref|YP_003536149.1|	-	2.8	7.8	8.4	0.14	12.0	0.5	2.4	3	0	0	3	3	3	0	RDD	family
SBP_bac_5	PF00496.17	gi|292656253|ref|YP_003536150.1|	-	3.4e-72	243.3	1.8	3.4e-72	243.3	1.3	1.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|292656253|ref|YP_003536150.1|	-	0.03	14.3	2.5	0.03	14.3	1.7	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peptidase_M20	PF01546.23	gi|292656254|ref|YP_003536151.1|	-	6.9e-25	87.6	3.5	8.7e-25	87.3	1.1	1.9	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292656254|ref|YP_003536151.1|	-	9.1e-10	38.2	1.4	1.2e-09	37.8	0.2	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M20	PF01546.23	gi|292656255|ref|YP_003536152.1|	-	9.8e-21	74.1	2.7	1.3e-20	73.6	1.9	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|292656255|ref|YP_003536152.1|	-	5.7e-07	29.2	0.1	1.3e-06	28.0	0.1	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
IclR	PF01614.13	gi|292656257|ref|YP_003536154.1|	-	1.5e-36	124.9	0.0	3.2e-36	123.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_5	PF01022.15	gi|292656257|ref|YP_003536154.1|	-	1.8e-09	37.0	0.0	4.5e-09	35.8	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|292656257|ref|YP_003536154.1|	-	5e-09	35.6	0.2	3.1e-08	33.0	0.0	2.3	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292656257|ref|YP_003536154.1|	-	0.0001	22.0	0.0	0.00023	20.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656257|ref|YP_003536154.1|	-	0.00011	21.7	0.1	0.0011	18.5	0.0	2.7	3	0	0	3	3	2	1	HTH	domain
TrmB	PF01978.14	gi|292656257|ref|YP_003536154.1|	-	0.00036	20.1	0.1	0.0014	18.2	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292656257|ref|YP_003536154.1|	-	0.00082	19.0	0.0	0.0019	17.8	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|292656257|ref|YP_003536154.1|	-	0.0011	18.6	0.0	0.0027	17.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_17	PF12728.2	gi|292656257|ref|YP_003536154.1|	-	0.0029	17.7	0.0	0.081	13.1	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656257|ref|YP_003536154.1|	-	0.0082	15.7	0.0	0.033	13.8	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF4423	PF14394.1	gi|292656257|ref|YP_003536154.1|	-	0.013	15.0	0.0	0.025	14.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.1	gi|292656257|ref|YP_003536154.1|	-	0.024	14.9	0.1	0.072	13.4	0.1	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_40	PF14493.1	gi|292656257|ref|YP_003536154.1|	-	0.029	14.5	0.0	0.067	13.4	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|292656257|ref|YP_003536154.1|	-	0.049	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
MotA_activ	PF09114.5	gi|292656257|ref|YP_003536154.1|	-	0.063	13.0	0.4	0.24	11.1	0.0	2.0	2	0	0	2	2	2	0	Transcription	factor	MotA,	activation	domain
HTH_9	PF08221.6	gi|292656257|ref|YP_003536154.1|	-	0.09	12.6	0.0	0.24	11.2	0.0	1.7	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292656257|ref|YP_003536154.1|	-	0.13	11.7	0.5	0.36	10.4	0.0	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
FBPase	PF00316.15	gi|292656258|ref|YP_003536155.1|	-	2.6e-55	187.5	0.0	3e-55	187.3	0.0	1.0	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
Inositol_P	PF00459.20	gi|292656258|ref|YP_003536155.1|	-	0.041	13.1	0.0	0.064	12.5	0.0	1.2	1	0	0	1	1	1	0	Inositol	monophosphatase	family
NADH_dh_m_C1	PF15088.1	gi|292656259|ref|YP_003536156.1|	-	0.54	9.7	2.2	0.45	10.0	0.4	1.7	1	1	1	2	2	2	0	NADH	dehydrogenase	[ubiquinone]	1	subunit	C1,	mitochondrial
AAA_16	PF13191.1	gi|292656260|ref|YP_003536157.1|	-	5.1e-12	46.1	0.4	2.7e-11	43.7	0.0	2.2	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656260|ref|YP_003536157.1|	-	2.9e-07	30.6	0.0	1.6e-06	28.2	0.0	2.1	3	0	0	3	3	2	1	AAA	domain
Rrf2	PF02082.15	gi|292656260|ref|YP_003536157.1|	-	0.00016	21.7	0.1	0.00035	20.6	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.1	gi|292656260|ref|YP_003536157.1|	-	0.00025	21.3	0.3	0.13	12.5	0.1	2.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|292656260|ref|YP_003536157.1|	-	0.00041	19.6	0.0	0.00095	18.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292656260|ref|YP_003536157.1|	-	0.00054	19.5	1.5	0.0011	18.5	0.3	2.2	2	0	0	2	2	2	1	MarR	family
AAA_25	PF13481.1	gi|292656260|ref|YP_003536157.1|	-	0.0085	15.5	0.0	0.025	14.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
HTH_IclR	PF09339.5	gi|292656260|ref|YP_003536157.1|	-	0.014	15.0	0.1	0.032	13.8	0.1	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292656260|ref|YP_003536157.1|	-	0.015	15.4	0.3	0.047	13.8	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_7	PF02796.10	gi|292656260|ref|YP_003536157.1|	-	0.017	14.9	0.0	0.12	12.2	0.0	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_ISL3	PF13542.1	gi|292656260|ref|YP_003536157.1|	-	0.02	14.0	0.0	0.064	12.4	0.0	2.0	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_AsnC-type	PF13404.1	gi|292656260|ref|YP_003536157.1|	-	0.025	14.0	0.3	0.12	11.9	0.1	2.3	1	1	1	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656260|ref|YP_003536157.1|	-	0.03	13.9	0.0	0.1	12.3	0.0	1.9	1	0	0	1	1	1	0	Homeodomain-like	domain
Arch_ATPase	PF01637.13	gi|292656260|ref|YP_003536157.1|	-	0.031	13.9	0.0	0.048	13.3	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
AAA	PF00004.24	gi|292656260|ref|YP_003536157.1|	-	0.036	14.2	0.0	0.073	13.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|292656260|ref|YP_003536157.1|	-	0.044	13.9	0.0	0.079	13.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_29	PF13555.1	gi|292656260|ref|YP_003536157.1|	-	0.071	12.6	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Pas_Saposin	PF09016.5	gi|292656260|ref|YP_003536157.1|	-	0.084	12.8	0.0	0.31	11.0	0.0	1.9	2	0	0	2	2	2	0	Pas	factor	saposin	fold
HTH_Crp_2	PF13545.1	gi|292656260|ref|YP_003536157.1|	-	0.11	12.3	0.1	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF815	PF05673.8	gi|292656260|ref|YP_003536157.1|	-	0.12	11.2	0.0	0.24	10.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
HTH_20	PF12840.2	gi|292656260|ref|YP_003536157.1|	-	0.19	11.5	2.0	0.99	9.2	0.2	2.9	4	0	0	4	4	3	0	Helix-turn-helix	domain
DUF2249	PF10006.4	gi|292656261|ref|YP_003536158.1|	-	7.8e-25	86.2	0.3	8.6e-25	86.1	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
COX1	PF00115.15	gi|292656262|ref|YP_003536159.1|	-	0.00084	18.0	38.8	0.00089	17.9	7.8	4.2	1	1	2	4	4	4	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cupin_2	PF07883.6	gi|292656264|ref|YP_003536161.1|	-	1e-09	37.7	0.1	1.2e-09	37.4	0.1	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.7	gi|292656264|ref|YP_003536161.1|	-	0.0058	15.9	0.0	0.012	14.9	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF861)
Pirin	PF02678.11	gi|292656264|ref|YP_003536161.1|	-	0.014	15.2	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	Pirin
DUF1637	PF07847.7	gi|292656264|ref|YP_003536161.1|	-	0.015	14.6	0.1	0.017	14.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1637)
AraC_binding	PF02311.14	gi|292656264|ref|YP_003536161.1|	-	0.034	13.8	0.0	0.046	13.4	0.0	1.1	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Pirin_C	PF05726.8	gi|292656264|ref|YP_003536161.1|	-	0.049	13.7	0.0	0.058	13.4	0.0	1.1	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Ni_hydr_CYTB	PF01292.15	gi|292656267|ref|YP_003536164.1|	-	0.09	12.1	0.1	0.099	12.0	0.0	1.0	1	0	0	1	1	1	0	Prokaryotic	cytochrome	b561
Cu-oxidase_3	PF07732.10	gi|292656268|ref|YP_003536165.1|	-	4.3e-13	49.0	0.3	2.6e-12	46.5	0.1	2.1	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|292656268|ref|YP_003536165.1|	-	5.2e-08	32.4	2.3	1e-06	28.2	0.7	3.1	2	2	0	2	2	2	1	Multicopper	oxidase
Copper-bind	PF00127.15	gi|292656268|ref|YP_003536165.1|	-	7.6e-07	29.2	0.6	2.3e-05	24.5	0.1	2.5	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|292656268|ref|YP_003536165.1|	-	5.7e-05	22.9	0.0	0.00047	20.0	0.0	2.1	2	0	0	2	2	2	1	Cupredoxin-like	domain
zinc-ribbons_6	PF07191.7	gi|292656269|ref|YP_003536166.1|	-	0.0022	17.7	0.3	0.0031	17.2	0.2	1.2	1	0	0	1	1	1	1	zinc-ribbons
DRP	PF06044.7	gi|292656269|ref|YP_003536166.1|	-	0.0037	16.2	0.1	0.0043	16.0	0.0	1.1	1	0	0	1	1	1	1	Dam-replacing	family
DZR	PF12773.2	gi|292656269|ref|YP_003536166.1|	-	0.005	16.6	0.9	0.0075	16.0	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
C1_1	PF00130.17	gi|292656269|ref|YP_003536166.1|	-	0.0069	16.0	1.1	0.01	15.5	0.8	1.3	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PhnA_Zn_Ribbon	PF08274.7	gi|292656269|ref|YP_003536166.1|	-	0.017	14.8	0.1	0.039	13.7	0.0	1.5	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
IBR	PF01485.16	gi|292656269|ref|YP_003536166.1|	-	0.03	14.1	0.3	0.04	13.7	0.2	1.2	1	0	0	1	1	1	0	IBR	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656269|ref|YP_003536166.1|	-	0.051	13.4	1.1	0.072	12.9	0.8	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|292656269|ref|YP_003536166.1|	-	0.066	12.8	0.9	0.087	12.4	0.6	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|292656269|ref|YP_003536166.1|	-	0.07	12.4	0.5	0.22	10.8	0.3	1.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-trcl	PF13451.1	gi|292656269|ref|YP_003536166.1|	-	0.075	12.6	3.0	0.8	9.3	0.1	2.2	2	0	0	2	2	2	0	Probable	zinc-binding	domain
Prim_Zn_Ribbon	PF08273.7	gi|292656269|ref|YP_003536166.1|	-	0.092	12.8	3.6	0.16	12.0	2.5	1.5	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
HypA	PF01155.14	gi|292656269|ref|YP_003536166.1|	-	0.11	12.1	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
GFA	PF04828.9	gi|292656269|ref|YP_003536166.1|	-	0.11	12.4	3.9	0.12	12.2	0.1	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zinc_ribbon_2	PF13240.1	gi|292656269|ref|YP_003536166.1|	-	0.52	9.8	3.9	5.1	6.7	0.0	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF2249	PF10006.4	gi|292656270|ref|YP_003536167.1|	-	2.4e-16	59.0	0.2	2.8e-16	58.8	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.12	gi|292656270|ref|YP_003536167.1|	-	0.00046	19.7	0.0	0.00055	19.4	0.0	1.2	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Radical_SAM	PF04055.16	gi|292656271|ref|YP_003536168.1|	-	1.3e-18	67.7	0.0	1.9e-18	67.2	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|292656271|ref|YP_003536168.1|	-	0.00024	21.2	0.0	0.00039	20.5	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|292656271|ref|YP_003536168.1|	-	0.00025	21.0	0.0	0.00047	20.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Lyase_aromatic	PF00221.14	gi|292656271|ref|YP_003536168.1|	-	0.12	10.8	0.1	0.16	10.3	0.1	1.1	1	0	0	1	1	1	0	Aromatic	amino	acid	lyase
Copper-bind	PF00127.15	gi|292656272|ref|YP_003536169.1|	-	6.4e-16	58.4	0.8	6.2e-15	55.2	0.5	2.2	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|292656272|ref|YP_003536169.1|	-	4.3e-06	26.5	0.0	6.2e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
PKD	PF00801.15	gi|292656272|ref|YP_003536169.1|	-	0.014	15.1	2.6	0.014	15.1	1.8	2.4	2	1	0	2	2	2	0	PKD	domain
CoA_transf_3	PF02515.12	gi|292656273|ref|YP_003536170.1|	-	0.0023	17.2	0.4	0.0038	16.4	0.1	1.4	1	1	0	1	1	1	1	CoA-transferase	family	III
Tim17	PF02466.14	gi|292656273|ref|YP_003536170.1|	-	1.7	8.6	7.2	0.11	12.5	0.3	2.2	2	1	0	2	2	2	0	Tim17/Tim22/Tim23/Pmp24	family
COX1	PF00115.15	gi|292656274|ref|YP_003536171.1|	-	8.3e-46	156.5	46.9	8.3e-46	156.5	32.5	1.7	2	1	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2871	PF11070.3	gi|292656274|ref|YP_003536171.1|	-	0.0048	17.0	1.3	0.0048	17.0	0.9	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2871)
DUF4307	PF14155.1	gi|292656274|ref|YP_003536171.1|	-	0.18	11.5	4.3	15	5.3	0.0	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4307)
Phage_Coat_Gp8	PF05371.7	gi|292656274|ref|YP_003536171.1|	-	2.9	7.5	8.6	0.11	12.0	0.7	2.4	2	0	0	2	2	2	0	Phage	major	coat	protein,	Gp8
TAT_signal	PF10518.4	gi|292656276|ref|YP_003536173.1|	-	1.4	9.1	4.9	3.2	7.9	3.4	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1427	PF07235.6	gi|292656277|ref|YP_003536174.1|	-	1.9e-05	24.6	3.3	2.1e-05	24.4	2.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
Copper-bind	PF00127.15	gi|292656278|ref|YP_003536175.1|	-	4.4e-33	113.4	1.2	1.5e-15	57.2	0.1	3.5	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|292656278|ref|YP_003536175.1|	-	6.5e-11	42.0	0.0	3e-05	23.8	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
Jag_N	PF14804.1	gi|292656278|ref|YP_003536175.1|	-	0.016	15.1	0.1	3.2	7.8	0.0	2.4	2	0	0	2	2	2	0	Jag	N-terminus
Aurora-A_bind	PF09041.5	gi|292656278|ref|YP_003536175.1|	-	0.15	11.8	0.1	12	5.6	0.0	2.3	2	0	0	2	2	2	0	Aurora-A	binding
CytB6-F_Fe-S	PF08802.5	gi|292656278|ref|YP_003536175.1|	-	6	6.9	6.9	0.46	10.5	0.7	2.3	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
HTH_10	PF04967.7	gi|292656279|ref|YP_003536176.1|	-	2e-18	65.6	0.0	3.5e-18	64.9	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_IclR	PF09339.5	gi|292656279|ref|YP_003536176.1|	-	0.00028	20.4	0.7	0.00093	18.7	0.1	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|292656279|ref|YP_003536176.1|	-	0.0079	15.7	0.2	0.054	13.0	0.1	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656279|ref|YP_003536176.1|	-	0.016	14.5	0.0	0.028	13.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292656279|ref|YP_003536176.1|	-	0.049	13.2	0.0	0.15	11.7	0.0	1.9	2	0	0	2	2	2	0	MarR	family
MarR	PF01047.17	gi|292656279|ref|YP_003536176.1|	-	0.082	12.6	0.1	0.18	11.5	0.1	1.7	1	1	0	1	1	1	0	MarR	family
PuR_N	PF09182.5	gi|292656279|ref|YP_003536176.1|	-	0.12	11.9	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
HTH_20	PF12840.2	gi|292656280|ref|YP_003536177.1|	-	1.3e-15	56.9	0.1	2.2e-15	56.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656280|ref|YP_003536177.1|	-	5.2e-11	41.9	0.0	1.1e-10	40.9	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656280|ref|YP_003536177.1|	-	3.2e-10	39.5	0.6	7e-10	38.4	0.4	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|292656280|ref|YP_003536177.1|	-	5.5e-08	32.3	0.0	9.6e-08	31.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292656280|ref|YP_003536177.1|	-	9.6e-07	28.3	0.0	1.7e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_7	PF02796.10	gi|292656280|ref|YP_003536177.1|	-	9.5e-06	25.3	0.0	1.9e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
MarR	PF01047.17	gi|292656280|ref|YP_003536177.1|	-	3.7e-05	23.3	0.0	0.00051	19.6	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|292656280|ref|YP_003536177.1|	-	9.8e-05	22.6	0.0	0.00016	21.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|292656280|ref|YP_003536177.1|	-	0.00018	20.8	0.0	0.00035	19.8	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|292656280|ref|YP_003536177.1|	-	0.00024	20.8	0.0	0.00042	20.0	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292656280|ref|YP_003536177.1|	-	0.0011	19.0	0.1	0.0017	18.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|292656280|ref|YP_003536177.1|	-	0.0021	17.6	0.1	0.0036	16.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
DUF742	PF05331.6	gi|292656280|ref|YP_003536177.1|	-	0.0034	16.9	0.1	0.0081	15.7	0.1	1.7	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF742)
RuvB_C	PF05491.8	gi|292656280|ref|YP_003536177.1|	-	0.0044	16.6	0.0	0.01	15.4	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
FUR	PF01475.14	gi|292656280|ref|YP_003536177.1|	-	0.0045	16.9	0.0	0.007	16.2	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_AsnC-type	PF13404.1	gi|292656280|ref|YP_003536177.1|	-	0.013	15.0	0.0	0.03	13.8	0.0	1.7	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_38	PF13936.1	gi|292656280|ref|YP_003536177.1|	-	0.019	14.5	0.0	0.035	13.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|292656280|ref|YP_003536177.1|	-	0.03	14.3	0.0	0.053	13.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.8	gi|292656280|ref|YP_003536177.1|	-	0.03	13.7	0.0	0.046	13.1	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Rrf2	PF02082.15	gi|292656280|ref|YP_003536177.1|	-	0.032	14.3	0.0	0.055	13.5	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_CodY	PF08222.6	gi|292656280|ref|YP_003536177.1|	-	0.066	12.5	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656280|ref|YP_003536177.1|	-	0.069	12.8	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
DUF4423	PF14394.1	gi|292656280|ref|YP_003536177.1|	-	0.082	12.4	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|292656280|ref|YP_003536177.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Cu-oxidase_2	PF07731.9	gi|292656281|ref|YP_003536178.1|	-	2.5e-30	104.7	13.6	9.9e-20	70.4	2.1	3.2	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_3	PF07732.10	gi|292656281|ref|YP_003536178.1|	-	4.8e-23	81.1	8.9	7.1e-18	64.4	0.7	2.6	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|292656281|ref|YP_003536178.1|	-	7.8e-14	51.8	0.1	2.4e-13	50.2	0.0	1.8	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|292656281|ref|YP_003536178.1|	-	1.3e-05	25.0	0.0	0.27	11.1	0.0	2.6	2	1	0	2	2	2	2	Cupredoxin-like	domain
UCR_Fe-S_N	PF10399.4	gi|292656281|ref|YP_003536178.1|	-	0.0012	17.9	1.7	0.0022	17.1	1.1	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|292656281|ref|YP_003536178.1|	-	0.0023	17.7	2.4	0.0043	16.9	1.7	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ThiC	PF01964.13	gi|292656282|ref|YP_003536179.1|	-	3.7e-195	648.3	0.0	4.2e-195	648.1	0.0	1.0	1	0	0	1	1	1	1	ThiC	family
zf-ribbon_3	PF13248.1	gi|292656282|ref|YP_003536179.1|	-	0.082	12.1	0.3	0.16	11.2	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Na_Ca_ex	PF01699.19	gi|292656283|ref|YP_003536180.1|	-	6.4e-40	135.9	25.5	2.6e-20	72.4	3.7	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
2TM	PF13239.1	gi|292656283|ref|YP_003536180.1|	-	0.012	15.6	0.1	0.052	13.6	0.0	2.1	2	0	0	2	2	2	0	2TM	domain
Usp	PF00582.21	gi|292656284|ref|YP_003536181.1|	-	8.6e-63	210.6	7.9	3.8e-35	121.1	0.3	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
FR47	PF08445.5	gi|292656284|ref|YP_003536181.1|	-	0.085	12.6	0.1	0.27	10.9	0.0	1.8	2	0	0	2	2	2	0	FR47-like	protein
PTA_PTB	PF01515.14	gi|292656286|ref|YP_003536183.1|	-	1.6e-92	310.0	0.0	2.3e-92	309.4	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
Malic_M	PF03949.10	gi|292656286|ref|YP_003536183.1|	-	7.2e-67	225.6	1.0	8e-67	225.4	0.0	1.6	2	0	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|292656286|ref|YP_003536183.1|	-	3.5e-29	101.6	0.0	1.4e-26	93.2	0.0	2.8	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Acyl-CoA_dh_C	PF12806.2	gi|292656286|ref|YP_003536183.1|	-	0.016	15.0	0.8	1.6	8.6	0.1	3.0	3	0	0	3	3	3	0	Acetyl-CoA	dehydrogenase	C-terminal	like
Big_3_4	PF13754.1	gi|292656288|ref|YP_003536185.1|	-	3.3e-11	43.3	39.3	1.2e-05	25.5	2.2	24.7	21	6	6	27	27	27	10	Bacterial	Ig-like	domain	(group	3)
CARDB	PF07705.6	gi|292656288|ref|YP_003536185.1|	-	9.9e-11	41.5	15.5	5.5e-06	26.3	0.3	12.8	12	1	2	14	14	14	4	CARDB
Big_3_3	PF13750.1	gi|292656288|ref|YP_003536185.1|	-	5.4e-09	35.6	60.6	0.00017	21.0	4.7	10.6	9	3	0	9	9	9	5	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.1	gi|292656288|ref|YP_003536185.1|	-	3.7e-07	30.3	15.3	0.95	9.5	0.2	9.3	8	1	2	11	11	11	2	Domain	of	unknown	function	(DUF4625)
Y_Y_Y	PF07495.8	gi|292656288|ref|YP_003536185.1|	-	3.5e-06	26.6	12.9	0.082	12.6	0.2	8.1	10	0	0	10	10	10	2	Y_Y_Y	domain
Big_3_2	PF12245.3	gi|292656288|ref|YP_003536185.1|	-	1.6e-05	24.3	13.0	0.0021	17.5	0.2	5.7	6	0	0	6	6	6	2	Bacterial	Ig-like	domain	(group	3)
Transglut_C	PF00927.17	gi|292656288|ref|YP_003536185.1|	-	0.00069	19.6	6.2	5.4	7.1	0.0	5.3	4	0	0	4	4	4	2	Transglutaminase	family,	C-terminal	ig	like	domain
HupF_HypC	PF01455.13	gi|292656288|ref|YP_003536185.1|	-	0.054	13.4	0.1	0.25	11.3	0.0	2.2	1	0	0	1	1	1	0	HupF/HypC	family
DUF3244	PF11589.3	gi|292656289|ref|YP_003536186.1|	-	0.035	13.8	0.5	11	5.7	0.0	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3244)
Ribosomal_L21p	PF00829.16	gi|292656289|ref|YP_003536186.1|	-	0.064	13.3	0.2	0.16	12.1	0.1	1.7	1	1	0	1	1	1	0	Ribosomal	prokaryotic	L21	protein
CbtB	PF09489.5	gi|292656289|ref|YP_003536186.1|	-	0.064	13.1	0.1	0.2	11.6	0.1	1.8	1	0	0	1	1	1	0	Probable	cobalt	transporter	subunit	(CbtB)
Menin	PF05053.8	gi|292656289|ref|YP_003536186.1|	-	0.17	10.0	4.1	0.23	9.5	2.8	1.2	1	0	0	1	1	1	0	Menin
DUF457	PF04307.9	gi|292656290|ref|YP_003536187.1|	-	1.8e-12	46.8	6.3	2.2e-12	46.6	4.4	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
ABC_tran	PF00005.22	gi|292656291|ref|YP_003536188.1|	-	2.3e-35	121.8	0.0	3.1e-35	121.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|292656291|ref|YP_003536188.1|	-	2e-09	36.9	0.0	7.8e-08	31.8	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|292656291|ref|YP_003536188.1|	-	6.3e-09	36.2	0.0	0.00088	19.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292656291|ref|YP_003536188.1|	-	3.8e-05	23.1	0.1	6.4e-05	22.4	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|292656291|ref|YP_003536188.1|	-	8e-05	22.5	0.2	0.00075	19.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292656291|ref|YP_003536188.1|	-	0.00012	22.1	1.7	0.00024	21.1	1.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656291|ref|YP_003536188.1|	-	0.00017	21.7	0.1	0.0013	18.9	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292656291|ref|YP_003536188.1|	-	0.00019	21.7	0.0	0.004	17.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|292656291|ref|YP_003536188.1|	-	0.00028	21.7	0.7	0.0005	20.8	0.5	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292656291|ref|YP_003536188.1|	-	0.00094	18.6	0.2	0.0035	16.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|292656291|ref|YP_003536188.1|	-	0.0011	18.5	0.0	0.0015	18.0	0.0	1.4	1	1	0	1	1	1	1	AAA-like	domain
DUF258	PF03193.11	gi|292656291|ref|YP_003536188.1|	-	0.0017	17.5	0.0	0.0026	16.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|292656291|ref|YP_003536188.1|	-	0.0021	18.0	0.4	0.011	15.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|292656291|ref|YP_003536188.1|	-	0.0025	17.4	1.0	0.088	12.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.10	gi|292656291|ref|YP_003536188.1|	-	0.005	16.5	0.1	0.18	11.5	0.0	2.1	2	0	0	2	2	2	1	NTPase
IstB_IS21	PF01695.12	gi|292656291|ref|YP_003536188.1|	-	0.0057	16.0	0.0	0.15	11.4	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|292656291|ref|YP_003536188.1|	-	0.0083	15.8	2.5	0.034	13.8	0.2	2.5	2	1	0	2	2	2	1	Part	of	AAA	domain
T2SE	PF00437.15	gi|292656291|ref|YP_003536188.1|	-	0.0098	14.8	0.0	0.019	13.8	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|292656291|ref|YP_003536188.1|	-	0.012	15.0	0.0	0.025	14.0	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NACHT	PF05729.7	gi|292656291|ref|YP_003536188.1|	-	0.038	13.6	0.0	0.078	12.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_23	PF13476.1	gi|292656291|ref|YP_003536188.1|	-	0.042	14.1	0.0	0.061	13.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|292656291|ref|YP_003536188.1|	-	0.052	13.4	0.1	0.56	10.1	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|292656291|ref|YP_003536188.1|	-	0.056	13.1	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Miro	PF08477.8	gi|292656291|ref|YP_003536188.1|	-	0.057	13.9	0.0	0.13	12.8	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
Rad17	PF03215.10	gi|292656291|ref|YP_003536188.1|	-	0.061	11.9	0.1	0.43	9.2	0.0	1.7	1	1	1	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
MMR_HSR1	PF01926.18	gi|292656291|ref|YP_003536188.1|	-	0.074	13.0	0.1	0.14	12.1	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|292656291|ref|YP_003536188.1|	-	0.082	11.9	0.3	0.13	11.2	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_14	PF13173.1	gi|292656291|ref|YP_003536188.1|	-	0.13	12.1	0.0	0.49	10.3	0.0	1.8	1	1	1	2	2	2	0	AAA	domain
PIF1	PF05970.9	gi|292656291|ref|YP_003536188.1|	-	0.17	10.8	0.0	0.31	9.9	0.0	1.4	1	1	1	2	2	2	0	PIF1-like	helicase
FtsX	PF02687.16	gi|292656292|ref|YP_003536189.1|	-	8.6e-14	51.3	15.2	5.7e-12	45.4	7.4	2.2	2	0	0	2	2	2	2	FtsX-like	permease	family
MacB_PCD	PF12704.2	gi|292656292|ref|YP_003536189.1|	-	1.5e-08	34.5	1.3	1.5e-08	34.5	0.9	2.4	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
MacB_PCD	PF12704.2	gi|292656293|ref|YP_003536190.1|	-	4.4e-29	101.7	3.3	6.7e-29	101.1	2.3	1.3	1	0	0	1	1	1	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|292656293|ref|YP_003536190.1|	-	6e-12	45.4	11.7	6e-12	45.4	8.1	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
DAGK_prokar	PF01219.14	gi|292656294|ref|YP_003536191.1|	-	0.093	12.3	2.4	0.13	11.8	1.6	1.2	1	0	0	1	1	1	0	Prokaryotic	diacylglycerol	kinase
Cellulose_synt	PF03552.9	gi|292656294|ref|YP_003536191.1|	-	0.21	9.8	1.4	0.22	9.7	1.0	1.0	1	0	0	1	1	1	0	Cellulose	synthase
DUF4350	PF14258.1	gi|292656295|ref|YP_003536192.1|	-	4.7e-10	39.5	0.4	4.7e-10	39.5	0.2	2.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
PA	PF02225.17	gi|292656295|ref|YP_003536192.1|	-	0.0048	16.5	3.7	1.2	8.8	0.0	3.1	3	1	1	4	4	4	2	PA	domain
Glyco_hydro_42M	PF08532.5	gi|292656295|ref|YP_003536192.1|	-	0.011	14.9	0.0	1.6	7.8	0.0	2.3	2	0	0	2	2	2	0	Beta-galactosidase	trimerisation	domain
ABC_transp_aux	PF09822.4	gi|292656295|ref|YP_003536192.1|	-	0.041	13.3	0.0	0.056	12.8	0.0	1.2	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
DUF4159	PF13709.1	gi|292656295|ref|YP_003536192.1|	-	0.051	12.6	0.0	0.067	12.2	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4159)
AAA_3	PF07726.6	gi|292656296|ref|YP_003536193.1|	-	5.5e-62	207.1	0.1	1e-61	206.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292656296|ref|YP_003536193.1|	-	2.2e-16	59.8	0.0	3.6e-16	59.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|292656296|ref|YP_003536193.1|	-	2e-09	36.6	0.0	4.6e-08	32.2	0.0	2.2	1	1	0	1	1	1	1	MCM2/3/5	family
Mg_chelatase	PF01078.16	gi|292656296|ref|YP_003536193.1|	-	3.5e-07	29.5	0.2	0.0053	15.9	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|292656296|ref|YP_003536193.1|	-	1e-05	25.0	0.0	0.00012	21.5	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|292656296|ref|YP_003536193.1|	-	1.1e-05	24.5	0.2	5.4e-05	22.3	0.1	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA	PF00004.24	gi|292656296|ref|YP_003536193.1|	-	5.5e-05	23.3	0.0	0.00015	21.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|292656296|ref|YP_003536193.1|	-	0.004	17.9	0.0	0.0094	16.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|292656296|ref|YP_003536193.1|	-	0.0086	15.8	0.2	0.026	14.2	0.1	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|292656296|ref|YP_003536193.1|	-	0.017	15.0	0.0	0.053	13.5	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|292656296|ref|YP_003536193.1|	-	0.021	15.1	0.0	0.032	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_2	PF07724.9	gi|292656296|ref|YP_003536193.1|	-	0.035	14.0	0.0	0.056	13.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
MOZART2	PF12926.2	gi|292656296|ref|YP_003536193.1|	-	0.18	11.3	0.5	0.43	10.1	0.0	1.8	2	0	0	2	2	2	0	Mitotic-spindle	organizing	gamma-tubulin	ring	associated
Exonuc_VIII	PF06630.6	gi|292656297|ref|YP_003536194.1|	-	0.082	12.2	0.3	0.12	11.6	0.2	1.3	1	0	0	1	1	1	0	Enterobacterial	exodeoxyribonuclease	VIII
DUF58	PF01882.13	gi|292656299|ref|YP_003536196.1|	-	5.5e-20	71.3	0.0	4e-19	68.5	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF4129	PF13559.1	gi|292656300|ref|YP_003536197.1|	-	6.9e-09	35.5	14.1	2.5e-08	33.7	1.7	3.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4129)
DUF1616	PF07760.6	gi|292656301|ref|YP_003536198.1|	-	2.2e-95	319.1	0.0	2.4e-95	318.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
A1_Propeptide	PF07966.7	gi|292656302|ref|YP_003536199.1|	-	0.035	13.8	0.6	0.096	12.5	0.0	2.1	2	0	0	2	2	2	0	A1	Propeptide
AAA_23	PF13476.1	gi|292656303|ref|YP_003536200.1|	-	1.2e-11	45.3	0.0	1.2e-11	45.3	0.0	4.0	3	1	0	3	3	2	1	AAA	domain
TPR_MLP1_2	PF07926.7	gi|292656303|ref|YP_003536200.1|	-	5.4e-08	32.6	28.7	2.6e-05	23.9	0.2	4.3	1	1	2	4	4	4	4	TPR/MLP1/MLP2-like	protein
Spc7	PF08317.6	gi|292656303|ref|YP_003536200.1|	-	2.8e-06	26.2	45.3	0.00012	20.8	6.2	4.4	2	2	1	4	4	4	3	Spc7	kinetochore	protein
AAA_13	PF13166.1	gi|292656303|ref|YP_003536200.1|	-	0.00016	20.3	28.5	0.0012	17.3	6.7	3.0	2	1	1	3	3	3	3	AAA	domain
FliD_N	PF02465.13	gi|292656303|ref|YP_003536200.1|	-	0.0017	18.7	13.1	1.3	9.3	2.1	5.2	3	1	1	4	4	3	2	Flagellar	hook-associated	protein	2	N-terminus
FlxA	PF14282.1	gi|292656303|ref|YP_003536200.1|	-	0.0017	18.2	21.2	0.16	11.9	3.4	4.7	3	2	2	5	5	5	2	FlxA-like	protein
SMC_N	PF02463.14	gi|292656303|ref|YP_003536200.1|	-	0.0028	16.9	0.2	0.031	13.5	0.1	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
CENP-F_leu_zip	PF10473.4	gi|292656303|ref|YP_003536200.1|	-	0.0047	16.7	17.5	0.0047	16.7	12.1	4.9	2	2	3	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TMF_TATA_bd	PF12325.3	gi|292656303|ref|YP_003536200.1|	-	0.0048	16.6	59.0	0.13	12.0	1.8	6.1	2	2	3	5	5	5	2	TATA	element	modulatory	factor	1	TATA	binding
NPV_P10	PF05531.7	gi|292656303|ref|YP_003536200.1|	-	0.0054	16.9	17.4	1.3	9.2	0.2	5.5	3	2	2	5	5	5	1	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.7	gi|292656303|ref|YP_003536200.1|	-	0.022	14.5	14.0	1.6	8.5	0.4	4.6	2	2	2	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Reo_sigmaC	PF04582.7	gi|292656303|ref|YP_003536200.1|	-	0.04	13.1	19.9	0.17	11.0	2.6	4.4	1	1	2	4	4	4	0	Reovirus	sigma	C	capsid	protein
Seryl_tRNA_N	PF02403.17	gi|292656303|ref|YP_003536200.1|	-	0.042	13.8	45.1	1.2	9.1	7.0	4.8	3	1	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
GAS	PF13851.1	gi|292656303|ref|YP_003536200.1|	-	0.06	12.5	45.9	0.054	12.6	5.5	4.5	2	2	1	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
LPP	PF04728.8	gi|292656303|ref|YP_003536200.1|	-	0.06	13.1	2.6	10	5.9	0.1	3.7	3	0	0	3	3	3	0	Lipoprotein	leucine-zipper
BLOC1_2	PF10046.4	gi|292656303|ref|YP_003536200.1|	-	0.069	13.2	26.5	1.6	8.9	1.4	5.4	3	2	0	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_27	PF13514.1	gi|292656303|ref|YP_003536200.1|	-	0.088	10.4	58.8	1	6.9	24.9	2.8	1	1	2	3	3	3	0	AAA	domain
Fzo_mitofusin	PF04799.8	gi|292656303|ref|YP_003536200.1|	-	0.16	11.3	25.0	0.023	14.1	0.9	5.4	4	3	2	6	6	6	0	fzo-like	conserved	region
PilJ	PF13675.1	gi|292656303|ref|YP_003536200.1|	-	0.16	12.2	37.0	0.89	9.8	2.2	4.8	2	2	2	4	4	4	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Snapin_Pallidin	PF14712.1	gi|292656303|ref|YP_003536200.1|	-	0.17	12.2	26.0	0.14	12.4	0.3	5.9	2	2	3	6	6	6	0	Snapin/Pallidin
Sipho_Gp157	PF05565.6	gi|292656303|ref|YP_003536200.1|	-	0.18	11.3	0.1	0.18	11.3	0.1	5.0	3	2	1	4	4	4	0	Siphovirus	Gp157
DUF3450	PF11932.3	gi|292656303|ref|YP_003536200.1|	-	0.19	10.9	30.5	0.72	9.0	5.1	5.1	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF3450)
Tropomyosin_1	PF12718.2	gi|292656303|ref|YP_003536200.1|	-	0.21	11.4	66.9	0.051	13.4	3.3	5.2	2	2	3	5	5	5	0	Tropomyosin	like
DUF342	PF03961.8	gi|292656303|ref|YP_003536200.1|	-	0.22	9.8	28.7	0.6	8.4	3.9	3.8	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF342)
ERM	PF00769.14	gi|292656303|ref|YP_003536200.1|	-	0.23	10.9	56.9	0.049	13.1	11.2	3.9	2	2	1	3	3	3	0	Ezrin/radixin/moesin	family
DUF1664	PF07889.7	gi|292656303|ref|YP_003536200.1|	-	0.26	11.0	28.8	1.1	9.0	0.3	5.4	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1664)
APG6	PF04111.7	gi|292656303|ref|YP_003536200.1|	-	0.26	10.2	51.9	0.038	13.0	9.5	3.8	2	2	1	3	3	3	0	Autophagy	protein	Apg6
DUF2981	PF11200.3	gi|292656303|ref|YP_003536200.1|	-	0.28	10.2	0.4	0.59	9.1	0.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2981)
Atg14	PF10186.4	gi|292656303|ref|YP_003536200.1|	-	0.31	9.9	48.2	0.084	11.8	6.8	4.4	1	1	3	4	4	4	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
TBPIP	PF07106.8	gi|292656303|ref|YP_003536200.1|	-	0.33	10.4	39.8	0.036	13.6	1.7	4.8	2	2	2	4	4	4	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
COG2	PF06148.6	gi|292656303|ref|YP_003536200.1|	-	0.71	9.7	39.4	0.41	10.5	1.5	6.7	2	2	3	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Bacillus_HBL	PF05791.6	gi|292656303|ref|YP_003536200.1|	-	0.82	9.0	14.2	3.4	6.9	0.2	3.9	2	2	1	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
IncA	PF04156.9	gi|292656303|ref|YP_003536200.1|	-	1.2	8.7	78.2	0.062	12.8	12.7	5.0	2	2	2	4	4	4	0	IncA	protein
Prefoldin	PF02996.12	gi|292656303|ref|YP_003536200.1|	-	1.7	8.3	37.2	13	5.5	0.2	8.0	3	3	8	11	11	11	0	Prefoldin	subunit
DivIC	PF04977.10	gi|292656303|ref|YP_003536200.1|	-	2.1	7.9	57.7	0.1	12.0	1.6	9.0	3	2	7	10	10	9	0	Septum	formation	initiator
DUF3584	PF12128.3	gi|292656303|ref|YP_003536200.1|	-	2.7	5.1	47.9	0.19	8.9	10.8	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Sec34	PF04136.10	gi|292656303|ref|YP_003536200.1|	-	2.9	7.5	15.1	3	7.5	0.1	4.2	2	2	2	4	4	4	0	Sec34-like	family
DUF2968	PF11180.3	gi|292656303|ref|YP_003536200.1|	-	3	7.1	47.4	0.53	9.6	5.5	5.5	2	2	4	6	6	6	0	Protein	of	unknown	function	(DUF2968)
Flagellin_C	PF00700.16	gi|292656303|ref|YP_003536200.1|	-	3.4	7.8	7.9	0.81	9.8	0.8	3.3	3	2	0	3	3	3	0	Bacterial	flagellin	C-terminal	helical	region
CCDC155	PF14662.1	gi|292656303|ref|YP_003536200.1|	-	4.2	6.9	52.3	0.035	13.7	7.1	4.3	3	1	1	4	4	4	0	Coiled-coil	region	of	CCDC155
DUF972	PF06156.8	gi|292656303|ref|YP_003536200.1|	-	4.4	7.6	37.1	0.55	10.5	0.8	5.8	2	2	3	5	5	4	0	Protein	of	unknown	function	(DUF972)
DUF4140	PF13600.1	gi|292656303|ref|YP_003536200.1|	-	4.9	7.6	64.1	13	6.2	7.0	9.0	2	1	4	6	6	4	0	N-terminal	domain	of	unknown	function	(DUF4140)
WEMBL	PF05701.6	gi|292656303|ref|YP_003536200.1|	-	6.8	5.0	52.4	0.026	12.9	12.4	3.2	2	1	0	3	3	3	0	Weak	chloroplast	movement	under	blue	light
MAD	PF05557.8	gi|292656303|ref|YP_003536200.1|	-	7	4.6	47.8	0.026	12.6	12.5	2.5	2	1	0	2	2	2	0	Mitotic	checkpoint	protein
ThiS	PF02597.15	gi|292656305|ref|YP_003536202.1|	-	4.7e-17	62.1	0.1	5.6e-17	61.9	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
DUF1952	PF09189.5	gi|292656306|ref|YP_003536203.1|	-	0.0023	17.5	0.1	0.003	17.2	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1952)
Pro_Al_protease	PF02983.9	gi|292656306|ref|YP_003536203.1|	-	0.07	13.0	0.1	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Alpha-lytic	protease	prodomain
AzlC	PF03591.9	gi|292656308|ref|YP_003536205.1|	-	2.2e-42	144.3	7.9	2.2e-42	144.3	5.5	1.8	2	0	0	2	2	2	1	AzlC	protein
AzlD	PF05437.7	gi|292656309|ref|YP_003536206.1|	-	9.2e-26	89.6	8.7	1e-25	89.5	6.1	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	protein	(AzlD)
DUF2014	PF09427.5	gi|292656309|ref|YP_003536206.1|	-	0.0016	17.6	0.4	0.0026	16.9	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF2014)
AFOR_C	PF01314.13	gi|292656311|ref|YP_003536208.1|	-	1.1e-118	396.3	1.6	1.3e-118	396.0	1.1	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|292656311|ref|YP_003536208.1|	-	5.1e-78	261.0	0.3	8.2e-78	260.3	0.2	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Big_2	PF02368.13	gi|292656312|ref|YP_003536209.1|	-	0.16	11.8	0.9	2.8	7.8	0.6	2.0	1	1	0	1	1	1	0	Bacterial	Ig-like	domain	(group	2)
CytB6-F_Fe-S	PF08802.5	gi|292656312|ref|YP_003536209.1|	-	0.39	10.7	0.1	0.39	10.7	0.1	2.1	3	0	0	3	3	3	0	Cytochrome	B6-F	complex	Fe-S	subunit
EGF	PF00008.22	gi|292656313|ref|YP_003536210.1|	-	0.09	12.7	2.7	0.13	12.2	1.8	1.3	1	1	0	1	1	1	0	EGF-like	domain
Toxin_32	PF08120.6	gi|292656313|ref|YP_003536210.1|	-	0.18	11.4	5.0	0.3	10.7	3.4	1.5	1	1	0	1	1	1	0	Tamulustoxin	family
DICT	PF10069.4	gi|292656314|ref|YP_003536211.1|	-	4.3e-18	65.0	0.0	6.9e-18	64.4	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
Radical_SAM	PF04055.16	gi|292656315|ref|YP_003536212.1|	-	7.6e-05	22.9	0.0	0.00014	22.1	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
GATase_5	PF13507.1	gi|292656316|ref|YP_003536213.1|	-	7.7e-42	142.9	0.0	9.3e-42	142.7	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|292656316|ref|YP_003536213.1|	-	1.8e-07	30.8	0.0	2.4e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|292656316|ref|YP_003536213.1|	-	0.00048	19.7	0.0	0.00074	19.1	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF4066	PF13278.1	gi|292656316|ref|YP_003536213.1|	-	0.0068	15.6	0.0	0.009	15.2	0.0	1.2	1	0	0	1	1	1	1	Putative	amidotransferase
DJ-1_PfpI	PF01965.19	gi|292656316|ref|YP_003536213.1|	-	0.014	14.8	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	DJ-1/PfpI	family
Peptidase_C26	PF07722.8	gi|292656316|ref|YP_003536213.1|	-	0.054	12.9	0.0	0.082	12.3	0.0	1.2	1	0	0	1	1	1	0	Peptidase	C26
PurS	PF02700.9	gi|292656317|ref|YP_003536214.1|	-	2.1e-25	88.4	0.0	2.3e-25	88.3	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
AP_endonuc_2	PF01261.19	gi|292656317|ref|YP_003536214.1|	-	0.035	13.3	0.2	0.04	13.2	0.1	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
GntP_permease	PF02447.11	gi|292656318|ref|YP_003536215.1|	-	4.6e-93	312.1	29.0	5.7e-93	311.8	20.1	1.0	1	0	0	1	1	1	1	GntP	family	permease
Formyl_trans_N	PF00551.14	gi|292656319|ref|YP_003536216.1|	-	3.2e-41	140.8	0.0	4.5e-41	140.3	0.0	1.2	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.1	gi|292656319|ref|YP_003536216.1|	-	7.2e-08	32.0	0.2	1.8e-07	30.7	0.1	1.6	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|292656319|ref|YP_003536216.1|	-	2.3e-06	26.9	0.7	5.9e-06	25.6	0.1	2.1	2	0	0	2	2	2	1	ACT	domain
TMV_coat	PF00721.16	gi|292656319|ref|YP_003536216.1|	-	0.00037	20.4	0.0	0.0012	18.7	0.0	1.8	2	0	0	2	2	2	1	Virus	coat	protein	(TMV	like)
ACT_4	PF13291.1	gi|292656319|ref|YP_003536216.1|	-	0.00071	19.8	0.1	0.0024	18.1	0.1	1.9	1	0	0	1	1	1	1	ACT	domain
SAICAR_synt	PF01259.13	gi|292656321|ref|YP_003536218.1|	-	3.5e-17	62.3	0.0	7.5e-17	61.2	0.0	1.4	1	1	0	1	1	1	1	SAICAR	synthetase
SIR2	PF02146.12	gi|292656322|ref|YP_003536219.1|	-	1.2e-44	152.1	0.0	1.5e-44	151.8	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
TPP_enzyme_M	PF00205.17	gi|292656322|ref|YP_003536219.1|	-	0.0021	17.8	0.0	0.013	15.2	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DUF164	PF02591.10	gi|292656322|ref|YP_003536219.1|	-	0.24	11.2	1.1	0.83	9.5	0.2	2.2	2	1	0	2	2	2	0	Putative	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292656322|ref|YP_003536219.1|	-	0.41	10.6	2.7	3	7.8	2.0	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
PAS_9	PF13426.1	gi|292656323|ref|YP_003536220.1|	-	4.5e-13	49.4	0.1	3.2e-12	46.7	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.5	gi|292656323|ref|YP_003536220.1|	-	2e-10	40.6	2.2	2.5e-10	40.3	0.2	2.3	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.20	gi|292656323|ref|YP_003536220.1|	-	2.1e-09	37.2	1.5	2.1e-09	37.2	1.0	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.1	gi|292656323|ref|YP_003536220.1|	-	8.3e-09	35.6	0.2	3.4e-08	33.6	0.1	2.1	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.19	gi|292656323|ref|YP_003536220.1|	-	1.8e-08	34.1	0.0	4.6e-08	32.8	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|292656323|ref|YP_003536220.1|	-	1.4e-07	31.0	0.1	5.8e-07	29.1	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.6	gi|292656323|ref|YP_003536220.1|	-	1.9e-06	27.9	0.0	4.6e-06	26.6	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
GAF_2	PF13185.1	gi|292656323|ref|YP_003536220.1|	-	1.6e-05	25.4	0.3	3.7e-05	24.2	0.2	1.7	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.21	gi|292656323|ref|YP_003536220.1|	-	0.0012	19.0	1.1	0.0045	17.1	0.2	2.5	2	1	0	2	2	2	1	GAF	domain
PAS_7	PF12860.2	gi|292656323|ref|YP_003536220.1|	-	0.056	13.4	1.4	0.2	11.7	0.1	2.5	2	1	0	2	2	2	0	PAS	fold
DUF848	PF05852.6	gi|292656323|ref|YP_003536220.1|	-	0.066	13.0	0.4	0.33	10.8	0.0	2.1	2	0	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
PAS_11	PF14598.1	gi|292656323|ref|YP_003536220.1|	-	0.07	13.0	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	PAS	domain
HATPase_c	PF02518.21	gi|292656324|ref|YP_003536221.1|	-	2.8e-15	55.9	0.4	3.2e-15	55.7	0.3	1.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292656324|ref|YP_003536221.1|	-	0.0021	17.8	0.0	0.0024	17.6	0.0	1.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|292656324|ref|YP_003536221.1|	-	0.0058	16.2	0.0	0.01	15.5	0.0	1.5	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Gp5_OB	PF06714.6	gi|292656325|ref|YP_003536222.1|	-	1.1	9.2	4.4	0.23	11.4	0.5	1.6	2	0	0	2	2	2	0	Gp5	N-terminal	OB	domain
Radical_SAM	PF04055.16	gi|292656326|ref|YP_003536223.1|	-	1.4e-13	51.3	0.1	3.8e-13	49.9	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
DUF457	PF04307.9	gi|292656327|ref|YP_003536224.1|	-	5.3e-08	32.3	13.3	8.6e-08	31.6	9.2	1.4	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
PRA1	PF03208.14	gi|292656327|ref|YP_003536224.1|	-	0.11	11.8	0.1	0.21	10.9	0.1	1.5	1	0	0	1	1	1	0	PRA1	family	protein
DUF457	PF04307.9	gi|292656328|ref|YP_003536225.1|	-	3.3e-07	29.7	9.4	5.2e-07	29.1	6.5	1.4	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Radical_SAM	PF04055.16	gi|292656329|ref|YP_003536226.1|	-	8.9e-17	61.7	0.0	2.3e-16	60.4	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
CofC	PF01983.11	gi|292656330|ref|YP_003536227.1|	-	6.7e-37	126.5	0.0	7.9e-37	126.3	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.2	gi|292656330|ref|YP_003536227.1|	-	0.013	15.5	3.0	0.02	14.9	2.0	1.4	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
DUF4398	PF14346.1	gi|292656331|ref|YP_003536228.1|	-	0.00073	19.5	8.9	0.0014	18.6	6.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4398)
Tubulin	PF00091.20	gi|292656332|ref|YP_003536229.1|	-	9.5e-25	87.6	0.0	2.1e-24	86.5	0.0	1.5	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
NAD_binding_10	PF13460.1	gi|292656333|ref|YP_003536230.1|	-	1.8e-29	103.0	0.0	2.2e-29	102.7	0.0	1.1	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292656333|ref|YP_003536230.1|	-	6.8e-24	84.6	0.0	8.4e-23	81.0	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292656333|ref|YP_003536230.1|	-	9.7e-16	57.2	0.0	1.8e-14	53.1	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|292656333|ref|YP_003536230.1|	-	1.2e-13	50.6	0.0	3.4e-07	29.4	0.0	2.4	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
NmrA	PF05368.8	gi|292656333|ref|YP_003536230.1|	-	3.3e-08	33.0	0.0	4.8e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
NAD_binding_4	PF07993.7	gi|292656333|ref|YP_003536230.1|	-	6.2e-06	25.3	0.0	0.026	13.4	0.0	2.2	1	1	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|292656333|ref|YP_003536230.1|	-	3.7e-05	22.7	0.1	0.00028	19.8	0.1	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|292656333|ref|YP_003536230.1|	-	0.00011	22.1	0.0	0.0002	21.3	0.0	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
Saccharop_dh	PF03435.13	gi|292656333|ref|YP_003536230.1|	-	0.00031	19.8	0.0	0.00046	19.2	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Glyco_transf_4	PF13439.1	gi|292656333|ref|YP_003536230.1|	-	0.0069	16.1	0.0	0.012	15.2	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
NAD_binding_2	PF03446.10	gi|292656333|ref|YP_003536230.1|	-	0.033	14.0	0.0	0.063	13.1	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DapB_N	PF01113.15	gi|292656333|ref|YP_003536230.1|	-	0.036	14.0	0.0	0.068	13.0	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
2-Hacid_dh_C	PF02826.14	gi|292656333|ref|YP_003536230.1|	-	0.056	12.6	0.0	0.092	11.8	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|292656333|ref|YP_003536230.1|	-	0.086	12.4	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	KR	domain
TrkA_N	PF02254.13	gi|292656333|ref|YP_003536230.1|	-	0.096	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
F420_oxidored	PF03807.12	gi|292656333|ref|YP_003536230.1|	-	0.11	12.9	0.0	0.22	11.9	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.22	gi|292656333|ref|YP_003536230.1|	-	0.12	12.8	0.0	0.23	11.8	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thymidylate_kin	PF02223.12	gi|292656335|ref|YP_003536232.1|	-	2.6e-37	127.9	0.0	3.2e-37	127.7	0.0	1.1	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_33	PF13671.1	gi|292656335|ref|YP_003536232.1|	-	6.2e-07	29.3	0.0	1e-06	28.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292656335|ref|YP_003536232.1|	-	0.00032	20.9	0.0	0.00078	19.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|292656335|ref|YP_003536232.1|	-	0.00066	19.6	0.3	0.00088	19.2	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
VirE	PF05272.6	gi|292656335|ref|YP_003536232.1|	-	0.077	12.4	0.0	3.5	7.0	0.0	2.7	2	1	0	2	2	2	0	Virulence-associated	protein	E
AAA_5	PF07728.9	gi|292656335|ref|YP_003536232.1|	-	0.12	12.0	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|292656335|ref|YP_003536232.1|	-	0.13	12.4	0.0	0.55	10.3	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
ABC2_membrane_4	PF12730.2	gi|292656336|ref|YP_003536233.1|	-	0.021	13.9	9.9	0.023	13.8	6.8	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
YesK	PF14150.1	gi|292656336|ref|YP_003536233.1|	-	0.028	14.5	8.1	0.042	13.9	5.6	1.3	1	0	0	1	1	1	0	YesK-like	protein
ABC2_membrane_2	PF12679.2	gi|292656336|ref|YP_003536233.1|	-	0.24	10.2	7.6	0.28	10.0	5.3	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2628	PF10947.3	gi|292656336|ref|YP_003536233.1|	-	7.2	6.4	11.2	18	5.1	7.7	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
E1_dh	PF00676.15	gi|292656337|ref|YP_003536234.1|	-	1.6e-77	260.2	0.0	2e-77	259.8	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
Transketolase_N	PF00456.16	gi|292656337|ref|YP_003536234.1|	-	3.4e-06	26.1	0.0	5.5e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.1	gi|292656337|ref|YP_003536234.1|	-	0.00021	20.2	0.0	0.00031	19.7	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|292656337|ref|YP_003536234.1|	-	0.0025	17.3	1.7	0.065	12.8	0.7	2.8	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
AsnC_trans_reg	PF01037.16	gi|292656338|ref|YP_003536235.1|	-	4.9e-09	35.7	0.1	5.4e-09	35.6	0.1	1.0	1	0	0	1	1	1	1	AsnC	family
TrkA_N	PF02254.13	gi|292656339|ref|YP_003536236.1|	-	7.3e-23	80.7	0.4	1.2e-22	80.0	0.3	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|292656339|ref|YP_003536236.1|	-	1.7e-10	40.3	2.2	6.4e-09	35.2	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292656339|ref|YP_003536236.1|	-	6e-07	29.0	0.0	1.2e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.19	gi|292656339|ref|YP_003536236.1|	-	1.4e-05	24.1	0.1	1.8e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|292656339|ref|YP_003536236.1|	-	0.00013	21.6	0.1	0.00025	20.7	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|292656339|ref|YP_003536236.1|	-	0.00018	20.9	0.2	0.00033	20.1	0.0	1.5	2	0	0	2	2	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.1	gi|292656339|ref|YP_003536236.1|	-	0.00031	20.9	0.5	0.00055	20.1	0.1	1.7	2	0	0	2	2	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|292656339|ref|YP_003536236.1|	-	0.00032	19.8	0.0	0.00035	19.7	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292656339|ref|YP_003536236.1|	-	0.00077	19.3	0.3	0.0042	16.9	0.2	2.1	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.10	gi|292656339|ref|YP_003536236.1|	-	0.0016	18.3	0.1	0.1	12.4	0.0	2.8	2	1	1	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292656339|ref|YP_003536236.1|	-	0.0019	17.7	0.1	0.0042	16.6	0.0	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.22	gi|292656339|ref|YP_003536236.1|	-	0.0031	17.8	0.6	0.0076	16.6	0.1	2.0	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|292656339|ref|YP_003536236.1|	-	0.0043	17.0	0.1	0.0078	16.2	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
CPSase_L_chain	PF00289.17	gi|292656339|ref|YP_003536236.1|	-	0.0051	16.9	0.1	0.011	15.7	0.0	1.7	2	0	0	2	2	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NAD_binding_10	PF13460.1	gi|292656339|ref|YP_003536236.1|	-	0.0064	16.5	0.4	0.012	15.6	0.3	1.4	1	0	0	1	1	1	1	NADH(P)-binding
IlvN	PF07991.7	gi|292656339|ref|YP_003536236.1|	-	0.0077	15.6	0.0	0.014	14.7	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Saccharop_dh	PF03435.13	gi|292656339|ref|YP_003536236.1|	-	0.021	13.8	0.2	0.027	13.4	0.2	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292656339|ref|YP_003536236.1|	-	0.026	13.6	0.1	0.059	12.5	0.0	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_18	PF12847.2	gi|292656339|ref|YP_003536236.1|	-	0.03	14.9	0.2	0.068	13.7	0.1	1.6	2	0	0	2	2	1	0	Methyltransferase	domain
F420_oxidored	PF03807.12	gi|292656339|ref|YP_003536236.1|	-	0.035	14.5	0.3	0.11	12.9	0.1	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|292656339|ref|YP_003536236.1|	-	0.037	13.7	0.0	0.07	12.8	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GFO_IDH_MocA	PF01408.17	gi|292656339|ref|YP_003536236.1|	-	0.041	14.4	0.2	0.068	13.6	0.1	1.8	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
XdhC_C	PF13478.1	gi|292656339|ref|YP_003536236.1|	-	0.047	14.0	0.1	0.12	12.6	0.0	1.7	2	0	0	2	2	2	0	XdhC	Rossmann	domain
FAD_binding_2	PF00890.19	gi|292656339|ref|YP_003536236.1|	-	0.047	12.5	0.1	0.084	11.7	0.1	1.4	1	1	0	1	1	1	0	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|292656339|ref|YP_003536236.1|	-	0.13	12.3	0.3	0.33	10.9	0.1	1.9	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AsnC_trans_reg	PF01037.16	gi|292656340|ref|YP_003536237.1|	-	1.7e-09	37.2	0.1	1.9e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	AsnC	family
MCPsignal	PF00015.16	gi|292656342|ref|YP_003536239.1|	-	2.6e-43	148.0	55.8	1e-41	142.8	23.8	3.2	1	1	2	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|292656342|ref|YP_003536239.1|	-	3e-12	46.5	5.6	3e-12	46.5	3.9	5.7	5	0	0	5	5	4	1	HAMP	domain
AAA_13	PF13166.1	gi|292656342|ref|YP_003536239.1|	-	7.5e-05	21.4	4.9	0.00096	17.7	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
DUF4446	PF14584.1	gi|292656342|ref|YP_003536239.1|	-	0.024	14.4	0.8	1.4	8.7	0.0	3.6	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4446)
Baculo_PEP_C	PF04513.7	gi|292656342|ref|YP_003536239.1|	-	0.038	13.8	5.1	3.6	7.3	0.1	4.2	2	1	1	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FlaC_arch	PF05377.6	gi|292656342|ref|YP_003536239.1|	-	0.055	13.3	5.8	4.8	7.1	0.1	4.6	4	2	0	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
IFT57	PF10498.4	gi|292656342|ref|YP_003536239.1|	-	0.13	10.9	1.9	3.1	6.4	0.0	3.3	3	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
DUF3584	PF12128.3	gi|292656342|ref|YP_003536239.1|	-	0.15	9.3	23.9	0.022	12.1	12.7	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
WXG100	PF06013.7	gi|292656342|ref|YP_003536239.1|	-	0.77	9.7	33.0	4.8	7.2	0.1	6.7	2	1	3	6	6	6	0	Proteins	of	100	residues	with	WXG
NPV_P10	PF05531.7	gi|292656342|ref|YP_003536239.1|	-	0.98	9.7	10.5	4	7.7	0.3	4.3	3	2	0	3	3	3	0	Nucleopolyhedrovirus	P10	protein
IncA	PF04156.9	gi|292656342|ref|YP_003536239.1|	-	1.3	8.5	12.2	22	4.5	5.0	4.2	1	1	1	2	2	2	0	IncA	protein
DUF1664	PF07889.7	gi|292656342|ref|YP_003536239.1|	-	2.4	7.9	12.7	22	4.8	0.0	4.6	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.6	gi|292656342|ref|YP_003536239.1|	-	3.1	7.6	12.1	17	5.2	0.2	4.9	3	2	1	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Laminin_II	PF06009.7	gi|292656342|ref|YP_003536239.1|	-	3.1	7.5	21.5	4.6	6.9	0.5	4.8	1	1	2	4	4	4	0	Laminin	Domain	II
ALIX_LYPXL_bnd	PF13949.1	gi|292656342|ref|YP_003536239.1|	-	3.2	6.6	13.4	0.43	9.4	1.5	2.8	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
APG6	PF04111.7	gi|292656342|ref|YP_003536239.1|	-	4.6	6.1	7.0	6.4	5.7	0.9	2.5	2	1	0	2	2	2	0	Autophagy	protein	Apg6
Reo_sigmaC	PF04582.7	gi|292656342|ref|YP_003536239.1|	-	7.7	5.5	23.7	1.1	8.3	3.5	4.0	2	1	1	4	4	4	0	Reovirus	sigma	C	capsid	protein
Fer4_15	PF13459.1	gi|292656345|ref|YP_003536242.1|	-	2.2e-05	24.8	0.3	3.1e-05	24.4	0.2	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|292656345|ref|YP_003536242.1|	-	0.002	18.4	0.6	0.0035	17.7	0.4	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
MCPsignal	PF00015.16	gi|292656347|ref|YP_003536244.1|	-	1.1e-48	165.6	41.5	4.4e-46	157.0	17.4	2.7	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
SBP_bac_8	PF13416.1	gi|292656347|ref|YP_003536244.1|	-	3.4e-44	151.6	0.0	1.2e-43	149.8	0.0	1.9	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292656347|ref|YP_003536244.1|	-	9.6e-30	104.3	0.8	9.6e-30	104.3	0.5	1.8	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
DUF489	PF04356.7	gi|292656347|ref|YP_003536244.1|	-	0.0069	15.9	2.6	0.069	12.7	0.2	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF489)
DUF1484	PF07363.6	gi|292656347|ref|YP_003536244.1|	-	0.027	14.7	8.6	3.7	7.9	0.0	4.5	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF1484)
CK2S	PF15011.1	gi|292656347|ref|YP_003536244.1|	-	0.037	13.8	3.1	2.7	7.7	0.1	3.6	2	1	0	2	2	2	0	Casein	Kinase	2	substrate
AAA_13	PF13166.1	gi|292656347|ref|YP_003536244.1|	-	0.079	11.4	9.4	0.017	13.6	2.3	2.0	2	0	0	2	2	2	0	AAA	domain
DUF948	PF06103.6	gi|292656347|ref|YP_003536244.1|	-	0.14	12.0	10.9	1	9.2	1.0	4.0	3	1	1	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
TPR_MLP1_2	PF07926.7	gi|292656347|ref|YP_003536244.1|	-	0.14	11.8	11.0	1.7	8.3	0.3	3.6	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
ISG65-75	PF11727.3	gi|292656347|ref|YP_003536244.1|	-	0.28	10.2	15.9	0.032	13.2	2.1	2.6	2	1	0	2	2	2	0	Invariant	surface	glycoprotein
V_ATPase_I	PF01496.14	gi|292656347|ref|YP_003536244.1|	-	0.37	8.5	5.8	0.35	8.6	0.4	1.8	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Baculo_PEP_C	PF04513.7	gi|292656347|ref|YP_003536244.1|	-	0.46	10.2	9.7	0.28	10.9	2.1	3.1	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IFT57	PF10498.4	gi|292656347|ref|YP_003536244.1|	-	0.54	8.9	2.1	1.3	7.6	0.2	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
Spc7	PF08317.6	gi|292656347|ref|YP_003536244.1|	-	0.7	8.4	10.0	0.15	10.6	0.2	2.9	1	1	2	3	3	3	0	Spc7	kinetochore	protein
WXG100	PF06013.7	gi|292656347|ref|YP_003536244.1|	-	1.1	9.3	19.0	2.9	7.9	0.6	5.3	2	2	4	6	6	6	0	Proteins	of	100	residues	with	WXG
NPV_P10	PF05531.7	gi|292656347|ref|YP_003536244.1|	-	1.1	9.5	16.5	21	5.4	0.2	5.4	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Fib_alpha	PF08702.5	gi|292656347|ref|YP_003536244.1|	-	1.2	9.2	2.2	9.2	6.3	0.0	2.8	1	1	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
Laminin_II	PF06009.7	gi|292656347|ref|YP_003536244.1|	-	1.8	8.3	18.3	0.39	10.4	1.0	4.2	2	2	2	4	4	4	0	Laminin	Domain	II
IncA	PF04156.9	gi|292656347|ref|YP_003536244.1|	-	2.9	7.4	9.1	3.3	7.2	1.7	3.0	1	1	1	2	2	2	0	IncA	protein
Atg14	PF10186.4	gi|292656347|ref|YP_003536244.1|	-	2.9	6.7	3.6	8.6	5.2	1.3	2.5	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
APG6	PF04111.7	gi|292656347|ref|YP_003536244.1|	-	3	6.7	7.6	3.6	6.5	0.7	2.3	2	0	0	2	2	2	0	Autophagy	protein	Apg6
Seryl_tRNA_N	PF02403.17	gi|292656347|ref|YP_003536244.1|	-	4.6	7.3	12.1	3.4	7.7	0.8	4.2	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3357	PF11837.3	gi|292656348|ref|YP_003536245.1|	-	0.06	13.1	0.1	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
Pro_isomerase	PF00160.16	gi|292656349|ref|YP_003536246.1|	-	6e-49	166.2	0.0	6.7e-49	166.0	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
SBF	PF01758.11	gi|292656350|ref|YP_003536247.1|	-	7.5e-42	142.8	12.8	7.5e-42	142.8	8.9	1.5	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
Mem_trans	PF03547.13	gi|292656350|ref|YP_003536247.1|	-	0.037	12.3	12.8	0.0049	15.2	5.1	2.2	2	1	1	3	3	3	0	Membrane	transport	protein
DUF2892	PF11127.3	gi|292656351|ref|YP_003536248.1|	-	4.8e-12	45.5	5.5	9.7e-12	44.5	3.8	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF1469	PF07332.6	gi|292656351|ref|YP_003536248.1|	-	5.2	6.8	8.3	6.8	6.4	5.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
AstE_AspA	PF04952.9	gi|292656352|ref|YP_003536249.1|	-	4.4e-34	117.7	0.0	5.6e-34	117.3	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.19	gi|292656352|ref|YP_003536249.1|	-	0.00048	19.8	0.0	0.14	11.7	0.0	2.2	2	0	0	2	2	2	2	Zinc	carboxypeptidase
Amidohydro_2	PF04909.9	gi|292656352|ref|YP_003536249.1|	-	0.021	14.3	0.5	0.092	12.2	0.0	1.9	2	0	0	2	2	2	0	Amidohydrolase
Glycos_transf_3	PF00591.16	gi|292656353|ref|YP_003536250.1|	-	1.9e-30	106.1	0.0	8.8e-30	103.9	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|292656353|ref|YP_003536250.1|	-	2.1e-13	49.6	0.4	2.1e-13	49.6	0.3	2.8	3	0	0	3	3	3	1	Glycosyl	transferase	family,	helical	bundle	domain
HTH_AsnC-type	PF13404.1	gi|292656354|ref|YP_003536251.1|	-	8e-07	28.5	1.8	0.00014	21.2	0.2	2.7	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
DUF1793	PF08760.6	gi|292656354|ref|YP_003536251.1|	-	0.087	12.6	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1793)
AsnC_trans_reg	PF01037.16	gi|292656354|ref|YP_003536251.1|	-	0.12	12.1	0.0	7.4	6.3	0.0	2.8	2	1	0	2	2	2	0	AsnC	family
PHP_C	PF13263.1	gi|292656355|ref|YP_003536252.1|	-	9.5e-23	79.4	0.2	3.7e-22	77.5	0.1	2.0	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|292656355|ref|YP_003536252.1|	-	1.5e-12	47.6	0.0	1.5e-11	44.3	0.0	2.1	1	1	0	1	1	1	1	PHP	domain
NAD_binding_8	PF13450.1	gi|292656356|ref|YP_003536253.1|	-	1.5e-16	60.1	1.5	3.6e-16	58.9	1.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Amino_oxidase	PF01593.19	gi|292656356|ref|YP_003536253.1|	-	1.7e-14	53.8	5.7	2.9e-09	36.5	0.7	2.1	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
DAO	PF01266.19	gi|292656356|ref|YP_003536253.1|	-	4.5e-10	38.9	2.1	1.3e-09	37.4	0.6	2.0	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|292656356|ref|YP_003536253.1|	-	8.9e-07	28.3	1.2	1.2e-06	27.8	0.8	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292656356|ref|YP_003536253.1|	-	2.6e-05	24.2	1.6	4.2e-05	23.5	1.1	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|292656356|ref|YP_003536253.1|	-	5.8e-05	22.2	0.3	8.5e-05	21.7	0.2	1.2	1	0	0	1	1	1	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|292656356|ref|YP_003536253.1|	-	9.2e-05	22.5	0.4	0.00019	21.5	0.3	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|292656356|ref|YP_003536253.1|	-	0.00012	21.1	2.5	0.00012	21.1	1.8	1.6	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|292656356|ref|YP_003536253.1|	-	0.00053	18.5	0.9	0.00093	17.7	0.6	1.3	1	0	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.17	gi|292656356|ref|YP_003536253.1|	-	0.00069	18.5	3.0	0.0055	15.6	1.2	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
ApbA	PF02558.11	gi|292656356|ref|YP_003536253.1|	-	0.00081	18.8	0.1	0.0071	15.7	0.1	2.1	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|292656356|ref|YP_003536253.1|	-	0.0015	17.6	0.2	0.0025	16.9	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|292656356|ref|YP_003536253.1|	-	0.0016	18.7	0.6	0.0092	16.3	0.2	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|292656356|ref|YP_003536253.1|	-	0.0056	16.4	0.1	1	9.0	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
3HCDH_N	PF02737.13	gi|292656356|ref|YP_003536253.1|	-	0.011	15.3	0.1	0.017	14.7	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292656356|ref|YP_003536253.1|	-	0.014	15.6	0.0	0.021	15.0	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|292656356|ref|YP_003536253.1|	-	0.017	14.0	0.7	0.025	13.5	0.2	1.5	2	0	0	2	2	2	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.16	gi|292656356|ref|YP_003536253.1|	-	0.02	14.4	0.1	0.038	13.5	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|292656356|ref|YP_003536253.1|	-	0.035	14.1	0.1	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	TrkA-N	domain
Shikimate_DH	PF01488.15	gi|292656356|ref|YP_003536253.1|	-	0.055	13.5	0.3	0.093	12.8	0.2	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
HAD_2	PF13419.1	gi|292656357|ref|YP_003536254.1|	-	2.3e-11	44.2	0.4	3e-11	43.8	0.3	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292656357|ref|YP_003536254.1|	-	2.8e-11	42.9	0.1	6.4e-11	41.8	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|292656357|ref|YP_003536254.1|	-	0.00015	22.2	1.3	0.0029	18.0	0.0	2.3	1	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HTH_31	PF13560.1	gi|292656357|ref|YP_003536254.1|	-	0.00033	20.7	1.0	0.13	12.4	0.0	2.8	2	1	1	3	3	3	2	Helix-turn-helix	domain
HAD	PF12710.2	gi|292656357|ref|YP_003536254.1|	-	0.1	12.7	0.1	0.2	11.7	0.1	1.6	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Aldo_ket_red	PF00248.16	gi|292656358|ref|YP_003536255.1|	-	3.4e-60	203.2	0.0	4e-60	203.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
KaiC	PF06745.8	gi|292656359|ref|YP_003536256.1|	-	1.7e-43	148.3	0.0	1.9e-43	148.1	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|292656359|ref|YP_003536256.1|	-	3.5e-08	33.0	0.0	5.9e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292656359|ref|YP_003536256.1|	-	4.1e-06	26.4	0.0	4.9e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
GvpD	PF07088.6	gi|292656359|ref|YP_003536256.1|	-	6.4e-06	24.7	0.0	2e-05	23.0	0.0	1.6	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_22	PF13401.1	gi|292656359|ref|YP_003536256.1|	-	1.9e-05	24.8	0.1	8.5e-05	22.6	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|292656359|ref|YP_003536256.1|	-	3.6e-05	23.4	0.0	9.3e-05	22.1	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|292656359|ref|YP_003536256.1|	-	0.00011	22.0	0.0	0.00021	21.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|292656359|ref|YP_003536256.1|	-	0.00018	20.9	0.0	0.00034	20.0	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
RecA	PF00154.16	gi|292656359|ref|YP_003536256.1|	-	0.00079	18.5	0.1	0.0023	17.0	0.0	1.7	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
MEDS	PF14417.1	gi|292656359|ref|YP_003536256.1|	-	0.0016	17.5	0.0	0.0028	16.7	0.0	1.5	2	0	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_17	PF13207.1	gi|292656359|ref|YP_003536256.1|	-	0.0024	18.6	0.0	0.0046	17.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292656359|ref|YP_003536256.1|	-	0.0036	17.1	0.1	0.0053	16.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|292656359|ref|YP_003536256.1|	-	0.0072	16.0	0.0	0.0094	15.6	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_18	PF13238.1	gi|292656359|ref|YP_003536256.1|	-	0.016	15.4	0.0	0.025	14.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|292656359|ref|YP_003536256.1|	-	0.017	15.3	0.1	0.041	14.0	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|292656359|ref|YP_003536256.1|	-	0.02	14.8	0.0	0.06	13.3	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|292656359|ref|YP_003536256.1|	-	0.022	14.7	0.0	0.035	14.0	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.9	gi|292656359|ref|YP_003536256.1|	-	0.026	14.2	0.0	0.044	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|292656359|ref|YP_003536256.1|	-	0.027	14.1	0.0	0.065	12.8	0.0	1.7	2	1	0	2	2	2	0	NACHT	domain
AAA_35	PF14516.1	gi|292656359|ref|YP_003536256.1|	-	0.032	12.8	0.0	0.054	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
DnaB_C	PF03796.10	gi|292656359|ref|YP_003536256.1|	-	0.036	12.9	0.0	0.062	12.1	0.0	1.4	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
RNA_helicase	PF00910.17	gi|292656359|ref|YP_003536256.1|	-	0.049	13.8	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
cobW	PF02492.14	gi|292656359|ref|YP_003536256.1|	-	0.08	12.3	0.0	0.13	11.6	0.0	1.6	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
KTI12	PF08433.5	gi|292656359|ref|YP_003536256.1|	-	0.11	11.7	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
ATP_bind_1	PF03029.12	gi|292656359|ref|YP_003536256.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Miro	PF08477.8	gi|292656359|ref|YP_003536256.1|	-	0.13	12.7	0.1	2.4	8.6	0.0	2.2	1	1	1	2	2	2	0	Miro-like	protein
DAP3	PF10236.4	gi|292656359|ref|YP_003536256.1|	-	0.13	11.1	0.0	0.21	10.4	0.0	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
ArgK	PF03308.11	gi|292656359|ref|YP_003536256.1|	-	0.14	10.9	0.0	0.27	9.9	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
Zeta_toxin	PF06414.7	gi|292656359|ref|YP_003536256.1|	-	0.15	11.0	0.0	0.28	10.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
SelR	PF01641.13	gi|292656361|ref|YP_003536258.1|	-	1.2e-49	167.0	0.1	1.4e-49	166.8	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.9	gi|292656361|ref|YP_003536258.1|	-	0.008	16.1	0.1	0.016	15.2	0.1	1.5	1	1	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
DUF2296	PF10058.4	gi|292656361|ref|YP_003536258.1|	-	0.0094	15.6	0.1	1.1	9.1	0.0	2.3	2	0	0	2	2	2	1	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DZR	PF12773.2	gi|292656361|ref|YP_003536258.1|	-	0.013	15.3	1.7	0.18	11.6	1.3	2.4	1	1	1	2	2	2	0	Double	zinc	ribbon
HNH_5	PF14279.1	gi|292656361|ref|YP_003536258.1|	-	0.13	12.2	0.3	0.31	11.0	0.1	1.7	2	0	0	2	2	2	0	HNH	endonuclease
Ribosomal_L37e	PF01907.14	gi|292656361|ref|YP_003536258.1|	-	0.35	10.7	0.2	0.35	10.7	0.1	1.7	2	0	0	2	2	2	0	Ribosomal	protein	L37e
RRN7	PF11781.3	gi|292656361|ref|YP_003536258.1|	-	8.6	5.9	7.6	1.3	8.5	0.4	2.6	2	1	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
PepSY_TM_3	PF13706.1	gi|292656362|ref|YP_003536259.1|	-	0.33	10.4	0.0	0.33	10.4	0.0	2.4	3	0	0	3	3	3	0	PepSY-associated	TM	helix
HTH_5	PF01022.15	gi|292656363|ref|YP_003536260.1|	-	1.1e-07	31.4	0.1	1.5e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656363|ref|YP_003536260.1|	-	3.6e-07	29.8	0.3	6.6e-07	29.0	0.1	1.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|292656363|ref|YP_003536260.1|	-	0.00045	19.9	0.2	0.00052	19.7	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|292656363|ref|YP_003536260.1|	-	0.066	12.6	0.2	0.11	11.8	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292656363|ref|YP_003536260.1|	-	0.08	12.6	0.0	0.14	11.8	0.0	1.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292656363|ref|YP_003536260.1|	-	0.095	12.3	0.0	0.29	10.8	0.0	1.7	2	0	0	2	2	2	0	MarR	family
LMBR1	PF04791.11	gi|292656365|ref|YP_003536262.1|	-	0.69	8.4	4.4	0.83	8.1	3.1	1.0	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Usp	PF00582.21	gi|292656366|ref|YP_003536263.1|	-	1.6e-31	109.3	2.3	1.8e-31	109.2	1.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
CBS	PF00571.23	gi|292656366|ref|YP_003536263.1|	-	0.0068	16.1	0.6	6	6.7	0.0	2.9	2	1	0	3	3	3	2	CBS	domain
AP_endonuc_2	PF01261.19	gi|292656366|ref|YP_003536263.1|	-	0.12	11.6	0.7	0.17	11.1	0.5	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
HHH_5	PF14520.1	gi|292656367|ref|YP_003536264.1|	-	1.9e-05	24.7	0.1	1.9e-05	24.7	0.1	2.4	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|292656367|ref|YP_003536264.1|	-	0.00039	20.3	0.3	0.00098	19.0	0.1	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
HHH_2	PF12826.2	gi|292656367|ref|YP_003536264.1|	-	0.024	14.4	0.5	0.052	13.4	0.0	1.7	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Cdd1	PF11731.3	gi|292656367|ref|YP_003536264.1|	-	0.025	14.5	0.0	0.043	13.7	0.0	1.3	1	0	0	1	1	1	0	Pathogenicity	locus
HTH_23	PF13384.1	gi|292656367|ref|YP_003536264.1|	-	0.047	13.3	0.4	0.09	12.4	0.2	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
TfoX_C	PF04994.8	gi|292656367|ref|YP_003536264.1|	-	0.099	12.5	0.0	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	TfoX	C-terminal	domain
DNA_pol_lambd_f	PF10391.4	gi|292656367|ref|YP_003536264.1|	-	0.11	12.0	0.0	0.19	11.3	0.0	1.4	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
eIF-5_eIF-2B	PF01873.12	gi|292656369|ref|YP_003536266.1|	-	3.6e-27	94.4	0.0	5.5e-27	93.9	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.15	gi|292656369|ref|YP_003536266.1|	-	3.8e-08	32.9	0.3	6.7e-08	32.2	0.2	1.4	1	0	0	1	1	1	1	TRAM	domain
DUF2387	PF09526.5	gi|292656369|ref|YP_003536266.1|	-	0.055	13.4	0.4	0.11	12.4	0.3	1.5	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.1	gi|292656369|ref|YP_003536266.1|	-	0.32	11.3	1.5	5.2	7.4	1.0	2.2	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DNA_RNApol_7kD	PF03604.8	gi|292656369|ref|YP_003536266.1|	-	0.5	9.8	3.2	13	5.4	2.6	2.2	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Transgly_assoc	PF04226.8	gi|292656370|ref|YP_003536267.1|	-	0.0068	16.4	1.7	0.0099	15.9	1.2	1.2	1	0	0	1	1	1	1	Transglycosylase	associated	protein
DUF4131	PF13567.1	gi|292656370|ref|YP_003536267.1|	-	0.11	11.8	0.0	0.13	11.6	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
FAA_hydrolase	PF01557.13	gi|292656371|ref|YP_003536268.1|	-	3.3e-48	164.0	0.0	4.3e-48	163.6	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Ion_trans_2	PF07885.11	gi|292656374|ref|YP_003536271.1|	-	2.8e-17	62.2	6.0	4.2e-17	61.6	2.6	2.2	2	0	0	2	2	2	1	Ion	channel
Ion_trans	PF00520.26	gi|292656374|ref|YP_003536271.1|	-	3.4e-13	49.3	9.2	5.1e-13	48.7	6.4	1.2	1	0	0	1	1	1	1	Ion	transport	protein
zf-ribbon_3	PF13248.1	gi|292656374|ref|YP_003536271.1|	-	0.00022	20.3	1.4	0.00033	19.7	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|292656374|ref|YP_003536271.1|	-	0.012	15.4	0.5	0.018	14.8	0.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|292656374|ref|YP_003536271.1|	-	0.1	12.1	1.9	0.16	11.5	1.3	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
FYVE	PF01363.16	gi|292656374|ref|YP_003536271.1|	-	0.14	12.1	1.6	0.21	11.5	1.1	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|292656374|ref|YP_003536271.1|	-	0.21	10.9	0.6	12	5.3	0.4	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.8	gi|292656374|ref|YP_003536271.1|	-	0.28	10.7	2.2	14	5.2	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ribosomal_L37e	PF01907.14	gi|292656374|ref|YP_003536271.1|	-	0.5	10.2	2.4	1.1	9.1	1.6	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-C2H2_3	PF13878.1	gi|292656374|ref|YP_003536271.1|	-	0.74	9.4	3.9	0.98	9.0	0.7	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Xan_ur_permease	PF00860.15	gi|292656376|ref|YP_003536273.1|	-	5.6e-88	295.0	44.7	7.7e-88	294.5	31.0	1.2	1	0	0	1	1	1	1	Permease	family
Pribosyltran	PF00156.22	gi|292656377|ref|YP_003536274.1|	-	3.3e-18	65.5	1.2	4.4e-18	65.1	0.8	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|292656377|ref|YP_003536274.1|	-	0.00097	18.3	0.1	0.001	18.3	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|292656377|ref|YP_003536274.1|	-	0.029	13.6	0.1	0.051	12.8	0.1	1.5	1	1	0	1	1	1	0	Phosphoribosyl	transferase
ASRT	PF07100.6	gi|292656377|ref|YP_003536274.1|	-	0.033	13.9	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Anabaena	sensory	rhodopsin	transducer
Lactate_perm	PF02652.9	gi|292656378|ref|YP_003536275.1|	-	8.5e-93	311.6	29.7	8.6e-92	308.2	20.6	1.9	1	1	0	1	1	1	1	L-lactate	permease
COX2	PF00116.15	gi|292656380|ref|YP_003536277.1|	-	0.067	13.0	0.1	0.11	12.2	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF328	PF03883.9	gi|292656381|ref|YP_003536278.1|	-	0.0054	16.0	0.0	0.011	15.0	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF328)
DUF262	PF03235.9	gi|292656383|ref|YP_003536280.1|	-	6.5e-16	58.9	10.7	6.5e-15	55.7	7.3	2.4	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF262
HNH	PF01844.18	gi|292656383|ref|YP_003536280.1|	-	2.9e-06	27.0	0.6	5.4e-06	26.1	0.4	1.5	1	0	0	1	1	1	1	HNH	endonuclease
ParBc	PF02195.13	gi|292656383|ref|YP_003536280.1|	-	0.0019	18.2	0.0	0.0044	17.0	0.0	1.6	1	0	0	1	1	1	1	ParB-like	nuclease	domain
YgbA_NO	PF11756.3	gi|292656384|ref|YP_003536281.1|	-	0.083	12.9	0.0	0.09	12.8	0.0	1.0	1	0	0	1	1	1	0	Nitrous	oxide-stimulated	promoter
Nup54	PF13874.1	gi|292656385|ref|YP_003536282.1|	-	0.019	14.6	4.7	0.11	12.1	0.4	2.5	1	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
DUF2937	PF11157.3	gi|292656385|ref|YP_003536282.1|	-	0.024	13.9	4.4	0.11	11.8	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Effector_1	PF04518.7	gi|292656385|ref|YP_003536282.1|	-	0.027	13.4	0.4	0.027	13.4	0.3	1.6	2	0	0	2	2	2	0	Effector	from	type	III	secretion	system
PhoU	PF01895.14	gi|292656385|ref|YP_003536282.1|	-	0.042	14.2	3.9	0.39	11.2	0.5	2.3	1	1	1	2	2	2	0	PhoU	domain
Med14	PF08638.6	gi|292656385|ref|YP_003536282.1|	-	0.049	12.8	0.3	1.6	7.8	0.1	2.1	2	0	0	2	2	2	0	Mediator	complex	subunit	MED14
DUF1515	PF07439.6	gi|292656385|ref|YP_003536282.1|	-	0.11	12.3	0.9	0.39	10.5	0.6	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
Plasmid_stabil	PF05016.9	gi|292656385|ref|YP_003536282.1|	-	0.16	12.3	2.0	18	5.7	0.1	2.8	2	1	1	3	3	3	0	Plasmid	stabilisation	system	protein
DUF3658	PF12395.3	gi|292656385|ref|YP_003536282.1|	-	0.17	11.4	1.9	0.13	11.7	0.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function
MscS_porin	PF12795.2	gi|292656385|ref|YP_003536282.1|	-	0.2	10.9	7.4	0.81	8.9	0.5	2.2	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Cep57_CLD_2	PF14197.1	gi|292656385|ref|YP_003536282.1|	-	0.2	11.5	3.6	0.53	10.2	2.4	1.8	1	1	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
Phage_GP20	PF06810.6	gi|292656385|ref|YP_003536282.1|	-	0.21	11.0	3.1	1	8.7	0.2	2.2	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
Lebercilin	PF15619.1	gi|292656385|ref|YP_003536282.1|	-	0.24	10.7	4.3	1.1	8.6	0.1	2.5	3	0	0	3	3	3	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Med9	PF07544.8	gi|292656385|ref|YP_003536282.1|	-	0.24	11.1	4.2	0.62	9.8	2.9	1.7	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF4482	PF14818.1	gi|292656385|ref|YP_003536282.1|	-	0.3	11.7	4.3	0.16	12.6	0.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4482)
Cob_adeno_trans	PF01923.13	gi|292656385|ref|YP_003536282.1|	-	0.32	10.7	2.0	1.3	8.7	1.4	2.0	1	1	0	1	1	1	0	Cobalamin	adenosyltransferase
FlxA	PF14282.1	gi|292656385|ref|YP_003536282.1|	-	0.4	10.6	11.1	1.1	9.1	2.4	2.4	1	1	1	2	2	2	0	FlxA-like	protein
ADIP	PF11559.3	gi|292656385|ref|YP_003536282.1|	-	0.61	9.9	4.5	1.7	8.5	3.1	1.9	1	1	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Tropomyosin_1	PF12718.2	gi|292656385|ref|YP_003536282.1|	-	0.8	9.5	4.9	2.2	8.1	0.0	2.7	3	1	0	3	3	3	0	Tropomyosin	like
NPV_P10	PF05531.7	gi|292656385|ref|YP_003536282.1|	-	0.87	9.8	7.0	8.6	6.6	4.9	2.1	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DivIC	PF04977.10	gi|292656385|ref|YP_003536282.1|	-	0.9	9.0	3.7	0.78	9.2	0.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF3450	PF11932.3	gi|292656385|ref|YP_003536282.1|	-	0.99	8.6	9.3	0.15	11.3	2.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF148	PF02520.12	gi|292656385|ref|YP_003536282.1|	-	1.1	9.0	4.9	4.2	7.1	1.5	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF148
Baculo_PEP_C	PF04513.7	gi|292656385|ref|YP_003536282.1|	-	1.1	9.0	6.3	2.6	7.8	4.4	1.6	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4094	PF13334.1	gi|292656385|ref|YP_003536282.1|	-	1.1	9.6	5.2	1.5	9.2	0.8	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
DUF4047	PF13256.1	gi|292656385|ref|YP_003536282.1|	-	1.3	8.9	3.8	1.6	8.6	1.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4047)
ECM11	PF15463.1	gi|292656385|ref|YP_003536282.1|	-	2.5	8.3	6.5	1.4	9.2	1.6	1.9	1	1	1	2	2	2	0	Extracellular	mutant	protein	11
Uds1	PF15456.1	gi|292656385|ref|YP_003536282.1|	-	3	7.8	6.6	3.2	7.7	1.9	2.6	2	1	0	2	2	2	0	Up-regulated	During	Septation
SlyX	PF04102.7	gi|292656385|ref|YP_003536282.1|	-	6	7.3	11.5	2.5	8.5	1.5	2.4	1	1	1	2	2	2	0	SlyX
FliJ	PF02050.11	gi|292656385|ref|YP_003536282.1|	-	7.4	6.6	12.2	1.6	8.8	3.7	2.5	2	1	0	2	2	2	0	Flagellar	FliJ	protein
Phage_integrase	PF00589.17	gi|292656386|ref|YP_003536283.1|	-	1.3e-26	93.3	0.0	1.9e-26	92.7	0.0	1.2	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|292656386|ref|YP_003536283.1|	-	4.9e-10	39.5	0.2	8.8e-10	38.7	0.1	1.4	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|292656386|ref|YP_003536283.1|	-	3.5e-05	23.8	0.1	0.00017	21.6	0.1	2.1	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
HTH_24	PF13412.1	gi|292656390|ref|YP_003536287.1|	-	1.5e-06	27.5	0.1	4.8e-06	25.8	0.0	2.0	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|292656390|ref|YP_003536287.1|	-	1.2e-05	24.8	0.0	2.7e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656390|ref|YP_003536287.1|	-	1.5e-05	24.7	0.0	3.6e-05	23.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656390|ref|YP_003536287.1|	-	0.00012	21.5	0.0	0.00047	19.6	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_38	PF13936.1	gi|292656390|ref|YP_003536287.1|	-	0.00088	18.7	0.2	0.0036	16.8	0.1	2.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|292656390|ref|YP_003536287.1|	-	0.0021	18.1	0.0	0.005	16.9	0.0	1.7	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_11	PF08279.7	gi|292656390|ref|YP_003536287.1|	-	0.0029	17.1	0.1	0.011	15.3	0.1	2.0	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|292656390|ref|YP_003536287.1|	-	0.0033	17.1	0.0	0.0066	16.1	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.5	gi|292656390|ref|YP_003536287.1|	-	0.0035	17.0	0.0	0.0085	15.7	0.0	1.7	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
LexA_DNA_bind	PF01726.11	gi|292656390|ref|YP_003536287.1|	-	0.0082	15.6	0.1	0.078	12.5	0.0	2.5	2	1	0	2	2	2	1	LexA	DNA	binding	domain
MarR	PF01047.17	gi|292656390|ref|YP_003536287.1|	-	0.012	15.2	0.1	0.029	14.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|292656390|ref|YP_003536287.1|	-	0.013	15.5	0.0	0.034	14.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HrcA_DNA-bdg	PF03444.10	gi|292656390|ref|YP_003536287.1|	-	0.022	14.1	0.1	0.055	12.9	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_DeoR	PF08220.7	gi|292656390|ref|YP_003536287.1|	-	0.023	14.2	0.1	0.049	13.1	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|292656390|ref|YP_003536287.1|	-	0.024	14.1	0.0	0.053	13.0	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
AAA_19	PF13245.1	gi|292656390|ref|YP_003536287.1|	-	0.065	12.9	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
FaeA	PF04703.7	gi|292656390|ref|YP_003536287.1|	-	0.076	13.1	0.0	0.21	11.7	0.0	1.8	2	0	0	2	2	1	0	FaeA-like	protein
FeoC	PF09012.5	gi|292656390|ref|YP_003536287.1|	-	0.092	12.4	0.0	0.2	11.3	0.0	1.5	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_AsnC-type	PF13404.1	gi|292656390|ref|YP_003536287.1|	-	0.11	12.0	0.0	0.51	9.9	0.0	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Suf	PF05843.9	gi|292656390|ref|YP_003536287.1|	-	0.91	9.1	6.4	1.7	8.2	4.5	1.4	1	0	0	1	1	1	0	Suppressor	of	forked	protein	(Suf)
CBFD_NFYB_HMF	PF00808.18	gi|292656392|ref|YP_003536289.1|	-	0.033	14.2	0.0	0.051	13.6	0.0	1.3	1	0	0	1	1	1	0	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
DUF1249	PF06853.7	gi|292656393|ref|YP_003536290.1|	-	0.0073	15.9	0.2	0.17	11.4	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1249)
WYL	PF13280.1	gi|292656394|ref|YP_003536291.1|	-	0.087	12.6	0.2	0.087	12.6	0.1	1.9	2	1	0	2	2	2	0	WYL	domain
TBP	PF00352.16	gi|292656395|ref|YP_003536292.1|	-	2.8e-44	148.3	0.0	4.5e-24	83.6	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|292656395|ref|YP_003536292.1|	-	0.006	16.6	0.0	0.44	10.6	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
EcoEI_R_C	PF08463.5	gi|292656396|ref|YP_003536293.1|	-	1.7e-42	145.0	5.5	4.3e-42	143.7	3.8	1.7	1	0	0	1	1	1	1	EcoEI	R	protein	C-terminal
ResIII	PF04851.10	gi|292656396|ref|YP_003536293.1|	-	9.8e-32	110.2	0.0	2.7e-31	108.8	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|292656396|ref|YP_003536293.1|	-	4.1e-11	42.6	0.0	1.1e-10	41.3	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HSDR_N	PF04313.9	gi|292656396|ref|YP_003536293.1|	-	7.5e-11	42.1	6.4	1.8e-08	34.3	0.0	4.0	3	1	1	4	4	4	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Helicase_C	PF00271.26	gi|292656396|ref|YP_003536293.1|	-	2.1e-07	30.7	0.0	5.7e-07	29.3	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
Spc42p	PF11544.3	gi|292656396|ref|YP_003536293.1|	-	0.016	15.1	1.1	0.041	13.8	0.8	1.7	1	0	0	1	1	1	0	Spindle	pole	body	component	Spc42p
AAA_19	PF13245.1	gi|292656396|ref|YP_003536293.1|	-	0.036	13.8	0.0	0.77	9.5	0.0	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
PhoH	PF02562.11	gi|292656396|ref|YP_003536293.1|	-	0.038	13.2	0.0	0.1	11.8	0.0	1.7	1	0	0	1	1	1	0	PhoH-like	protein
N6_Mtase	PF02384.11	gi|292656397|ref|YP_003536294.1|	-	5.6e-71	239.1	0.0	7.6e-71	238.7	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|292656397|ref|YP_003536294.1|	-	7e-19	67.9	0.0	1.3e-18	67.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
HsdM_N	PF12161.3	gi|292656397|ref|YP_003536294.1|	-	9.9e-15	55.1	1.5	1.6e-13	51.2	0.0	3.0	2	2	1	3	3	3	1	HsdM	N-terminal	domain
UPF0020	PF01170.13	gi|292656397|ref|YP_003536294.1|	-	4.7e-09	36.0	0.0	8.8e-09	35.1	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Eco57I	PF07669.6	gi|292656397|ref|YP_003536294.1|	-	0.00016	21.9	0.0	0.00035	20.8	0.0	1.5	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
MTS	PF05175.9	gi|292656397|ref|YP_003536294.1|	-	0.03	13.7	0.0	0.061	12.6	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methylase_S	PF01420.14	gi|292656398|ref|YP_003536295.1|	-	5.1e-47	159.9	0.0	1e-25	90.6	0.0	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
Nop14	PF04147.7	gi|292656399|ref|YP_003536296.1|	-	0.0062	14.5	4.7	0.0074	14.2	3.2	1.0	1	0	0	1	1	1	1	Nop14-like	family
DUF1192	PF06698.6	gi|292656399|ref|YP_003536296.1|	-	0.0099	15.6	1.0	0.021	14.6	0.7	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1192)
RHH_1	PF01402.16	gi|292656399|ref|YP_003536296.1|	-	0.013	15.3	0.1	0.013	15.3	0.1	2.9	3	1	1	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
ADIP	PF11559.3	gi|292656399|ref|YP_003536296.1|	-	0.022	14.6	4.6	0.027	14.3	3.2	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
HOOK	PF05622.7	gi|292656399|ref|YP_003536296.1|	-	0.046	11.5	7.2	0.062	11.1	5.0	1.2	1	1	0	1	1	1	0	HOOK	protein
End3	PF12761.2	gi|292656399|ref|YP_003536296.1|	-	0.12	11.9	5.1	0.15	11.7	3.5	1.2	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
Cpn60_TCP1	PF00118.19	gi|292656399|ref|YP_003536296.1|	-	0.14	10.7	0.2	0.14	10.7	0.1	1.1	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
DUF87	PF01935.12	gi|292656399|ref|YP_003536296.1|	-	0.15	11.8	1.8	0.19	11.5	1.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
SlyX	PF04102.7	gi|292656399|ref|YP_003536296.1|	-	0.15	12.4	3.1	0.29	11.5	1.6	2.0	1	1	1	2	2	2	0	SlyX
Lzipper-MIP1	PF14389.1	gi|292656399|ref|YP_003536296.1|	-	0.21	11.7	6.8	0.53	10.4	4.7	1.8	1	1	0	1	1	1	0	Leucine-zipper	of	ternary	complex	factor	MIP1
bZIP_2	PF07716.10	gi|292656399|ref|YP_003536296.1|	-	0.49	10.2	5.4	1.1	9.1	3.8	1.6	1	0	0	1	1	1	0	Basic	region	leucine	zipper
Uds1	PF15456.1	gi|292656399|ref|YP_003536296.1|	-	0.59	10.1	6.3	1.4	8.9	4.3	1.7	1	1	0	1	1	1	0	Up-regulated	During	Septation
DUF4140	PF13600.1	gi|292656399|ref|YP_003536296.1|	-	2.6	8.5	5.4	3.2	8.2	3.1	1.8	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Phage_integrase	PF00589.17	gi|292656400|ref|YP_003536297.1|	-	5.7e-31	107.5	0.1	9.3e-31	106.8	0.1	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|292656400|ref|YP_003536297.1|	-	2.1e-09	37.5	0.9	4.9e-09	36.3	0.6	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|292656400|ref|YP_003536297.1|	-	1.4e-05	25.1	1.8	7.5e-05	22.8	1.2	2.3	1	1	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3945	PF13101.1	gi|292656401|ref|YP_003536298.1|	-	0.019	14.2	0.0	0.038	13.2	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3945)
N6_Mtase	PF02384.11	gi|292656402|ref|YP_003536299.1|	-	1.6e-16	60.3	0.0	2.8e-16	59.4	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|292656402|ref|YP_003536299.1|	-	1.3e-15	57.4	0.0	5.3e-15	55.4	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292656402|ref|YP_003536299.1|	-	2.8e-07	30.2	0.1	2.2e-06	27.3	0.0	2.6	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292656402|ref|YP_003536299.1|	-	7.4e-06	26.5	0.0	7.2e-05	23.3	0.0	2.7	2	0	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292656402|ref|YP_003536299.1|	-	1.6e-05	24.0	0.0	6.4e-05	22.0	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
MTS	PF05175.9	gi|292656402|ref|YP_003536299.1|	-	3.1e-05	23.4	0.0	0.00069	19.0	0.0	2.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|292656402|ref|YP_003536299.1|	-	0.0002	21.6	0.1	0.0021	18.3	0.0	2.6	2	0	0	2	2	2	1	Methyltransferase	domain
TaqI_C	PF12950.2	gi|292656402|ref|YP_003536299.1|	-	0.059	13.1	0.0	0.18	11.5	0.0	1.8	2	0	0	2	2	2	0	TaqI-like	C-terminal	specificity	domain
N6_N4_Mtase	PF01555.13	gi|292656402|ref|YP_003536299.1|	-	0.064	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	DNA	methylase
IstB_IS21	PF01695.12	gi|292656403|ref|YP_003536300.1|	-	0.0027	17.1	0.0	0.0077	15.6	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.1	gi|292656403|ref|YP_003536300.1|	-	0.0035	17.4	0.1	0.021	14.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|292656403|ref|YP_003536300.1|	-	0.005	16.5	0.0	0.068	12.8	0.0	2.3	1	1	0	1	1	1	1	NACHT	domain
Peptidase_M75	PF09375.5	gi|292656403|ref|YP_003536300.1|	-	0.02	14.2	1.1	0.063	12.5	0.0	2.2	2	1	0	2	2	2	0	Imelysin
NB-ARC	PF00931.17	gi|292656403|ref|YP_003536300.1|	-	0.025	13.4	0.0	0.081	11.7	0.0	1.9	1	0	0	1	1	1	0	NB-ARC	domain
AAA_19	PF13245.1	gi|292656403|ref|YP_003536300.1|	-	0.28	10.9	0.0	0.57	9.9	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
Syntaxin-6_N	PF09177.6	gi|292656403|ref|YP_003536300.1|	-	0.39	11.1	5.0	0.24	11.8	0.6	3.0	4	0	0	4	4	4	0	Syntaxin	6,	N-terminal
Herpes_UL47	PF03362.8	gi|292656403|ref|YP_003536300.1|	-	0.49	8.6	0.0	0.71	8.1	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	UL47	protein
IncA	PF04156.9	gi|292656403|ref|YP_003536300.1|	-	3.7	7.0	8.7	11	5.5	6.0	1.8	1	0	0	1	1	1	0	IncA	protein
DUF2250	PF10007.4	gi|292656404|ref|YP_003536301.1|	-	0.00062	19.6	3.2	0.001	18.9	1.2	1.9	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.2	gi|292656404|ref|YP_003536301.1|	-	0.045	13.5	0.0	0.076	12.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656404|ref|YP_003536301.1|	-	0.047	13.3	0.0	0.095	12.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
AAA_10	PF12846.2	gi|292656405|ref|YP_003536302.1|	-	1.5e-21	77.1	0.1	2.2e-21	76.5	0.1	1.2	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|292656405|ref|YP_003536302.1|	-	3.7e-09	35.6	0.1	1.9e-08	33.3	0.0	2.0	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.2	gi|292656405|ref|YP_003536302.1|	-	2.3e-07	30.7	0.1	8.9e-07	28.8	0.0	2.1	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.1	gi|292656405|ref|YP_003536302.1|	-	0.00015	21.9	0.1	0.024	14.7	0.0	3.3	3	1	0	3	3	3	1	AAA	domain
DEAD	PF00270.24	gi|292656405|ref|YP_003536302.1|	-	0.032	13.7	0.0	0.094	12.2	0.0	1.8	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA	PF00004.24	gi|292656405|ref|YP_003536302.1|	-	0.06	13.5	0.2	3.4	7.8	0.0	3.4	3	1	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IF-2B	PF01008.12	gi|292656407|ref|YP_003536304.1|	-	0.0041	16.1	4.9	0.0048	15.9	3.4	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DUF2336	PF10098.4	gi|292656407|ref|YP_003536304.1|	-	0.049	12.8	2.8	0.056	12.6	1.9	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2336)
FUSC	PF04632.7	gi|292656407|ref|YP_003536304.1|	-	0.057	11.8	2.5	0.061	11.7	1.7	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
HAUS6_N	PF14661.1	gi|292656407|ref|YP_003536304.1|	-	0.058	12.7	9.7	0.07	12.4	6.8	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF4340	PF14238.1	gi|292656407|ref|YP_003536304.1|	-	0.074	12.7	0.2	0.11	12.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4340)
Swi3	PF07962.7	gi|292656407|ref|YP_003536304.1|	-	0.076	12.6	1.8	0.11	12.1	0.8	1.5	1	1	0	1	1	1	0	Replication	Fork	Protection	Component	Swi3
Pox_F11	PF04943.7	gi|292656407|ref|YP_003536304.1|	-	0.21	10.4	5.1	0.26	10.1	3.5	1.0	1	0	0	1	1	1	0	Poxvirus	F11	protein
YdfA_immunity	PF12127.3	gi|292656407|ref|YP_003536304.1|	-	0.38	9.5	3.7	0.44	9.4	2.6	1.1	1	0	0	1	1	1	0	SigmaW	regulon	antibacterial
TIP120	PF08623.5	gi|292656407|ref|YP_003536304.1|	-	0.47	10.0	5.1	0.58	9.7	3.5	1.1	1	0	0	1	1	1	0	TATA-binding	protein	interacting	(TIP20)
AAA_23	PF13476.1	gi|292656407|ref|YP_003536304.1|	-	0.64	10.3	11.3	0.8	9.9	7.8	1.0	1	0	0	1	1	1	0	AAA	domain
UPF0242	PF06785.6	gi|292656407|ref|YP_003536304.1|	-	0.7	8.5	10.9	0.79	8.3	7.5	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)
PA26	PF04636.8	gi|292656407|ref|YP_003536304.1|	-	0.74	8.4	6.9	0.78	8.3	4.8	1.0	1	0	0	1	1	1	0	PA26	p53-induced	protein	(sestrin)
V_ATPase_I	PF01496.14	gi|292656407|ref|YP_003536304.1|	-	0.83	7.4	8.5	0.77	7.5	5.9	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
NAGLU_C	PF12972.2	gi|292656407|ref|YP_003536304.1|	-	1.2	8.4	7.4	3	7.1	4.8	1.7	1	1	1	2	2	2	0	Alpha-N-acetylglucosaminidase	(NAGLU)	C-terminal	domain
DUF3829	PF12889.2	gi|292656407|ref|YP_003536304.1|	-	1.7	7.7	11.6	2.2	7.3	8.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
Spore_GerAC	PF05504.6	gi|292656407|ref|YP_003536304.1|	-	2.1	8.1	11.0	0.21	11.3	3.9	1.8	1	1	1	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
NPV_P10	PF05531.7	gi|292656407|ref|YP_003536304.1|	-	2.2	8.6	14.0	9.3	6.5	0.5	3.1	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
PRTase_1	PF11202.3	gi|292656407|ref|YP_003536304.1|	-	2.2	7.1	5.4	2.7	6.9	3.8	1.1	1	0	0	1	1	1	0	Phosphoribosyl	transferase	(PRTase)
Exonuc_VII_L	PF02601.10	gi|292656407|ref|YP_003536304.1|	-	3.5	6.7	10.3	4	6.5	7.2	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
KxDL	PF10241.4	gi|292656407|ref|YP_003536304.1|	-	3.6	7.5	15.4	4.9	7.1	9.2	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
Neur_chan_memb	PF02932.11	gi|292656407|ref|YP_003536304.1|	-	4.1	7.2	5.9	5.6	6.7	4.1	1.1	1	0	0	1	1	1	0	Neurotransmitter-gated	ion-channel	transmembrane	region
DUF3373	PF11853.3	gi|292656407|ref|YP_003536304.1|	-	4.1	5.8	7.4	5	5.5	5.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
DUF342	PF03961.8	gi|292656407|ref|YP_003536304.1|	-	5.1	5.3	9.5	5.6	5.2	6.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DUF2924	PF11149.3	gi|292656407|ref|YP_003536304.1|	-	6.9	6.6	7.7	10	6.1	5.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2924)
DELLA	PF12041.3	gi|292656407|ref|YP_003536304.1|	-	8.1	6.1	9.2	2.7	7.7	2.6	2.2	1	1	1	2	2	2	0	Transcriptional	regulator	DELLA	protein	N	terminal
AAA_10	PF12846.2	gi|292656408|ref|YP_003536305.1|	-	1.5e-24	87.0	0.1	2.3e-12	46.9	0.0	2.7	1	1	1	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|292656408|ref|YP_003536305.1|	-	4.2e-10	39.8	0.4	3.7e-09	36.7	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
FtsK_SpoIIIE	PF01580.13	gi|292656408|ref|YP_003536305.1|	-	0.00092	18.7	0.0	0.0071	15.8	0.0	2.4	3	0	0	3	3	3	1	FtsK/SpoIIIE	family
DEAD	PF00270.24	gi|292656408|ref|YP_003536305.1|	-	0.0014	18.1	0.2	0.019	14.4	0.1	2.6	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|292656408|ref|YP_003536305.1|	-	0.0024	18.0	3.0	0.017	15.2	0.2	3.2	3	1	0	3	3	3	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|292656408|ref|YP_003536305.1|	-	0.013	14.1	0.0	1.1	7.7	0.0	2.4	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ResIII	PF04851.10	gi|292656408|ref|YP_003536305.1|	-	0.074	12.8	0.6	0.45	10.3	0.3	2.4	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
VESA1_N	PF12785.2	gi|292656408|ref|YP_003536305.1|	-	0.099	11.5	0.1	0.15	10.9	0.0	1.1	1	0	0	1	1	1	0	Variant	erythrocyte	surface	antigen-1
S1FA	PF04689.8	gi|292656410|ref|YP_003536307.1|	-	1.5	8.7	4.4	1.2	9.0	0.8	2.4	2	0	0	2	2	2	0	DNA	binding	protein	S1FA
FixG_C	PF11614.3	gi|292656413|ref|YP_003536310.1|	-	0.024	14.7	0.5	0.024	14.7	0.4	2.1	2	1	0	2	2	2	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
DUF932	PF06067.6	gi|292656414|ref|YP_003536311.1|	-	3.9e-06	26.3	0.0	1.8e-05	24.1	0.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF932)
Creatinase_N	PF01321.13	gi|292656414|ref|YP_003536311.1|	-	0.026	15.0	0.0	0.08	13.4	0.0	1.8	1	0	0	1	1	1	0	Creatinase/Prolidase	N-terminal	domain
DUF2254	PF10011.4	gi|292656415|ref|YP_003536312.1|	-	0.033	12.6	3.6	3	6.1	2.1	2.4	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2254)
AAA_10	PF12846.2	gi|292656416|ref|YP_003536313.1|	-	1.9e-19	70.2	0.0	2.8e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|292656416|ref|YP_003536313.1|	-	4e-05	22.4	0.0	0.066	11.8	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_29	PF13555.1	gi|292656416|ref|YP_003536313.1|	-	0.00031	20.2	0.3	0.0036	16.8	0.1	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.12	gi|292656416|ref|YP_003536313.1|	-	0.00093	19.0	0.0	0.0057	16.4	0.0	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_33	PF13671.1	gi|292656416|ref|YP_003536313.1|	-	0.0079	16.0	0.0	0.16	11.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|292656416|ref|YP_003536313.1|	-	0.026	15.3	0.4	0.48	11.2	0.0	3.2	2	2	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|292656416|ref|YP_003536313.1|	-	0.069	12.6	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_16	PF13191.1	gi|292656416|ref|YP_003536313.1|	-	0.072	13.0	0.0	0.18	11.7	0.0	1.8	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656416|ref|YP_003536313.1|	-	0.12	12.4	0.0	0.39	10.8	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Phage_integrase	PF00589.17	gi|292656417|ref|YP_003536314.1|	-	6.9e-14	51.8	0.0	1.6e-13	50.7	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.1	gi|292656417|ref|YP_003536314.1|	-	9.6e-05	21.4	5.2	0.0034	16.5	0.4	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|292656417|ref|YP_003536314.1|	-	0.00013	21.7	6.9	0.0053	16.5	0.7	2.5	2	0	0	2	2	2	2	Double	zinc	ribbon
Phage_int_SAM_1	PF02899.12	gi|292656417|ref|YP_003536314.1|	-	0.0025	17.9	0.2	0.37	10.9	0.0	2.8	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
zinc_ribbon_2	PF13240.1	gi|292656417|ref|YP_003536314.1|	-	0.0062	15.9	6.3	0.029	13.8	1.1	2.8	2	0	0	2	2	2	1	zinc-ribbon	domain
Stc1	PF12898.2	gi|292656417|ref|YP_003536314.1|	-	0.011	15.7	2.2	0.011	15.7	1.5	2.1	2	0	0	2	2	2	0	Stc1	domain
Phage_int_SAM_4	PF13495.1	gi|292656417|ref|YP_003536314.1|	-	0.025	14.8	0.0	3.3	8.0	0.0	2.6	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
zf-BED	PF02892.10	gi|292656417|ref|YP_003536314.1|	-	0.026	14.2	6.8	3.8	7.3	0.1	3.5	2	1	1	3	3	3	0	BED	zinc	finger
CENP-F_C_Rb_bdg	PF10490.4	gi|292656417|ref|YP_003536314.1|	-	0.071	12.4	0.0	0.17	11.2	0.0	1.5	1	0	0	1	1	1	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
FYVE	PF01363.16	gi|292656417|ref|YP_003536314.1|	-	0.085	12.7	4.9	0.75	9.7	0.4	2.4	2	0	0	2	2	2	0	FYVE	zinc	finger
DUF2616	PF11077.3	gi|292656417|ref|YP_003536314.1|	-	0.13	11.7	3.1	0.44	10.0	0.5	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2616)
FdhE	PF04216.7	gi|292656417|ref|YP_003536314.1|	-	0.36	10.5	5.0	0.3	10.7	1.8	2.0	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
Ribosomal_L37e	PF01907.14	gi|292656417|ref|YP_003536314.1|	-	0.59	9.9	8.3	2.8	7.8	0.9	3.1	3	0	0	3	3	3	0	Ribosomal	protein	L37e
UPF0547	PF10571.4	gi|292656417|ref|YP_003536314.1|	-	4	7.2	8.4	2.6	7.8	0.1	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Prominin	PF05478.6	gi|292656419|ref|YP_003536316.1|	-	0.0006	17.4	0.6	0.00071	17.2	0.4	1.1	1	0	0	1	1	1	1	Prominin
DUF1351	PF07083.6	gi|292656419|ref|YP_003536316.1|	-	0.0013	18.3	1.4	0.0013	18.3	1.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1351)
Peptidase_C2	PF00648.16	gi|292656419|ref|YP_003536316.1|	-	0.0045	16.0	0.0	0.0053	15.7	0.0	1.1	1	0	0	1	1	1	1	Calpain	family	cysteine	protease
Sec8_exocyst	PF04048.9	gi|292656419|ref|YP_003536316.1|	-	0.0088	15.6	6.2	0.019	14.5	4.3	1.7	1	1	0	1	1	1	1	Sec8	exocyst	complex	component	specific	domain
AAA_13	PF13166.1	gi|292656419|ref|YP_003536316.1|	-	0.01	14.3	10.4	0.011	14.1	7.2	1.0	1	0	0	1	1	1	0	AAA	domain
SF-assemblin	PF06705.6	gi|292656419|ref|YP_003536316.1|	-	0.012	14.8	9.0	0.019	14.1	6.2	1.3	1	1	0	1	1	1	0	SF-assemblin/beta	giardin
Glypican	PF01153.14	gi|292656419|ref|YP_003536316.1|	-	0.015	13.9	2.7	0.016	13.8	1.9	1.2	1	0	0	1	1	1	0	Glypican
TraB	PF01963.12	gi|292656419|ref|YP_003536316.1|	-	0.024	14.0	6.4	0.031	13.7	4.4	1.1	1	0	0	1	1	1	0	TraB	family
Baculo_PEP_C	PF04513.7	gi|292656419|ref|YP_003536316.1|	-	0.029	14.1	0.8	0.044	13.5	0.4	1.4	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Tweety	PF04906.8	gi|292656419|ref|YP_003536316.1|	-	0.048	12.0	1.3	0.059	11.7	0.7	1.3	1	1	0	1	1	1	0	Tweety
FliD_N	PF02465.13	gi|292656419|ref|YP_003536316.1|	-	0.064	13.6	0.3	0.11	12.8	0.1	1.6	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	N-terminus
Atg14	PF10186.4	gi|292656419|ref|YP_003536316.1|	-	0.1	11.5	9.2	0.12	11.2	6.4	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
ISG65-75	PF11727.3	gi|292656419|ref|YP_003536316.1|	-	0.14	11.1	1.5	0.18	10.8	1.0	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
DUF349	PF03993.7	gi|292656419|ref|YP_003536316.1|	-	0.18	11.9	0.1	0.18	11.9	0.1	3.1	1	1	2	3	3	3	0	Domain	of	Unknown	Function	(DUF349)
ING	PF12998.2	gi|292656419|ref|YP_003536316.1|	-	0.18	12.0	12.1	7.2	6.9	6.9	2.8	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
WXG100	PF06013.7	gi|292656419|ref|YP_003536316.1|	-	0.21	11.5	4.0	0.33	10.9	0.9	2.5	1	1	2	3	3	3	0	Proteins	of	100	residues	with	WXG
Exonuc_VII_L	PF02601.10	gi|292656419|ref|YP_003536316.1|	-	0.23	10.6	5.4	0.29	10.2	3.8	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Sec20	PF03908.8	gi|292656419|ref|YP_003536316.1|	-	0.25	11.0	4.1	0.43	10.3	2.2	1.9	1	1	1	2	2	2	0	Sec20
POX	PF07526.6	gi|292656419|ref|YP_003536316.1|	-	0.29	11.3	3.1	0.18	12.0	0.7	1.7	1	1	1	2	2	2	0	Associated	with	HOX
DUF1732	PF08340.6	gi|292656419|ref|YP_003536316.1|	-	0.31	10.8	7.1	0.17	11.7	3.6	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1732)
DUF1664	PF07889.7	gi|292656419|ref|YP_003536316.1|	-	0.4	10.4	2.5	0.58	9.9	0.5	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF342	PF03961.8	gi|292656419|ref|YP_003536316.1|	-	0.45	8.8	8.1	0.67	8.2	5.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
Mnd1	PF03962.10	gi|292656419|ref|YP_003536316.1|	-	0.7	9.5	15.5	23	4.6	10.7	2.0	1	1	0	1	1	1	0	Mnd1	family
DUF3901	PF13040.1	gi|292656419|ref|YP_003536316.1|	-	0.75	9.1	13.7	0.092	12.0	1.7	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3901)
Laminin_II	PF06009.7	gi|292656419|ref|YP_003536316.1|	-	0.81	9.4	5.9	0.22	11.2	0.5	2.1	1	1	1	2	2	2	0	Laminin	Domain	II
Phage_Mu_Gam	PF07352.7	gi|292656419|ref|YP_003536316.1|	-	1	8.8	8.9	9	5.8	5.3	2.3	1	1	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF2937	PF11157.3	gi|292656419|ref|YP_003536316.1|	-	1	8.6	3.8	0.95	8.7	1.5	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
RmuC	PF02646.11	gi|292656419|ref|YP_003536316.1|	-	1.2	7.8	9.2	0.7	8.6	3.7	1.9	1	1	1	2	2	2	0	RmuC	family
DUF4200	PF13863.1	gi|292656419|ref|YP_003536316.1|	-	1.7	8.6	20.8	4.1	7.3	8.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF1311	PF07007.7	gi|292656419|ref|YP_003536316.1|	-	1.7	8.7	6.2	50	4.0	4.3	2.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1311)
AbiH	PF14253.1	gi|292656419|ref|YP_003536316.1|	-	1.9	8.0	6.8	2.3	7.7	4.7	1.2	1	0	0	1	1	1	0	Bacteriophage	abortive	infection	AbiH
T2SF	PF00482.18	gi|292656419|ref|YP_003536316.1|	-	2	8.3	5.0	8.2	6.3	3.4	2.2	1	1	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
DUF4407	PF14362.1	gi|292656419|ref|YP_003536316.1|	-	2.1	7.2	5.9	3.8	6.3	4.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
KIP1	PF07765.7	gi|292656419|ref|YP_003536316.1|	-	2.6	7.9	6.5	4.3	7.2	0.4	2.8	1	1	2	3	3	3	0	KIP1-like	protein
CDC37_N	PF03234.9	gi|292656419|ref|YP_003536316.1|	-	2.7	8.2	8.4	4.8	7.4	5.8	1.3	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF4446	PF14584.1	gi|292656419|ref|YP_003536316.1|	-	2.8	7.7	6.7	2.5	7.9	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Enkurin	PF13864.1	gi|292656419|ref|YP_003536316.1|	-	3.4	7.9	18.4	1.4	9.2	6.8	2.7	1	1	1	2	2	2	0	Calmodulin-binding
zf-ZPR1	PF03367.8	gi|292656419|ref|YP_003536316.1|	-	3.8	6.6	6.6	3.9	6.5	0.4	2.0	1	1	1	2	2	2	0	ZPR1	zinc-finger	domain
DUF883	PF05957.8	gi|292656419|ref|YP_003536316.1|	-	4.3	7.7	7.3	2.7	8.4	1.0	2.5	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF1451	PF07295.6	gi|292656419|ref|YP_003536316.1|	-	4.6	6.9	10.6	11	5.8	6.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
DUF2508	PF10704.4	gi|292656419|ref|YP_003536316.1|	-	4.9	7.4	12.9	0.5	10.5	3.9	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2508)
PilJ	PF13675.1	gi|292656419|ref|YP_003536316.1|	-	5.4	7.3	8.1	7.1	6.9	4.2	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
GBP_C	PF02841.9	gi|292656419|ref|YP_003536316.1|	-	6.1	5.9	15.7	0.5	9.5	6.7	1.8	1	1	1	2	2	2	0	Guanylate-binding	protein,	C-terminal	domain
OmpH	PF03938.9	gi|292656419|ref|YP_003536316.1|	-	6.6	6.6	12.5	20	5.1	8.7	1.7	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
PhoU	PF01895.14	gi|292656419|ref|YP_003536316.1|	-	6.7	7.2	10.9	14	6.2	1.9	2.3	1	1	1	2	2	2	0	PhoU	domain
HSCB_C	PF07743.8	gi|292656419|ref|YP_003536316.1|	-	7.1	7.1	17.5	6.9	7.2	4.4	2.8	1	1	2	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
TPR_MLP1_2	PF07926.7	gi|292656419|ref|YP_003536316.1|	-	7.2	6.3	20.9	15	5.2	9.8	2.8	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF4047	PF13256.1	gi|292656419|ref|YP_003536316.1|	-	7.3	6.5	9.3	20	5.1	6.2	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4047)
TBPIP	PF07106.8	gi|292656419|ref|YP_003536316.1|	-	9.3	5.7	11.4	7.5	6.0	6.4	1.7	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
ACCA	PF03255.9	gi|292656419|ref|YP_003536316.1|	-	9.7	5.7	9.2	3.4	7.2	0.8	2.2	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
Cdc6_C	PF09079.6	gi|292656420|ref|YP_003536317.1|	-	1.9e-14	53.1	0.3	1.1e-13	50.6	0.1	2.3	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|292656420|ref|YP_003536317.1|	-	5.4e-12	46.0	1.6	6.4e-10	39.3	0.6	3.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656420|ref|YP_003536317.1|	-	5.1e-11	42.8	1.5	1.1e-10	41.8	0.2	2.0	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|292656420|ref|YP_003536317.1|	-	3.6e-08	33.6	0.0	8e-08	32.5	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|292656420|ref|YP_003536317.1|	-	8.6e-06	24.8	0.1	1.6e-05	23.9	0.0	1.5	2	0	0	2	2	2	1	NB-ARC	domain
AAA_14	PF13173.1	gi|292656420|ref|YP_003536317.1|	-	2.8e-05	24.0	0.1	9.4e-05	22.3	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|292656420|ref|YP_003536317.1|	-	3e-05	23.8	0.6	9e-05	22.2	0.1	2.0	2	1	0	2	2	2	1	Archaeal	ATPase
IstB_IS21	PF01695.12	gi|292656420|ref|YP_003536317.1|	-	0.00027	20.4	0.6	0.0025	17.2	0.3	2.6	2	2	0	2	2	2	1	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|292656420|ref|YP_003536317.1|	-	0.00042	19.8	0.2	0.00099	18.6	0.2	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Elong_Iki1	PF10483.4	gi|292656420|ref|YP_003536317.1|	-	0.0028	17.0	0.0	0.0065	15.8	0.0	1.5	1	1	0	1	1	1	1	Elongator	subunit	Iki1
Sigma54_activ_2	PF14532.1	gi|292656420|ref|YP_003536317.1|	-	0.0029	17.6	0.3	0.02	14.9	0.0	2.6	3	1	0	3	3	2	1	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|292656420|ref|YP_003536317.1|	-	0.0037	16.2	0.0	0.012	14.5	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.9	gi|292656420|ref|YP_003536317.1|	-	0.004	16.8	0.1	0.015	15.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_35	PF14516.1	gi|292656420|ref|YP_003536317.1|	-	0.0052	15.4	0.7	0.05	12.2	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
AAA_17	PF13207.1	gi|292656420|ref|YP_003536317.1|	-	0.0066	17.2	0.2	0.016	16.0	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
HTH_36	PF13730.1	gi|292656420|ref|YP_003536317.1|	-	0.011	15.8	0.1	0.11	12.6	0.0	2.7	2	2	1	3	3	3	0	Helix-turn-helix	domain
Mg_chelatase	PF01078.16	gi|292656420|ref|YP_003536317.1|	-	0.017	14.2	0.0	0.028	13.5	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Bac_DnaA	PF00308.13	gi|292656420|ref|YP_003536317.1|	-	0.056	13.0	0.1	0.15	11.6	0.1	1.8	1	1	0	1	1	1	0	Bacterial	dnaA	protein
AAA_6	PF12774.2	gi|292656420|ref|YP_003536317.1|	-	0.056	12.9	0.0	0.083	12.4	0.0	1.2	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region	D1
AAA_33	PF13671.1	gi|292656420|ref|YP_003536317.1|	-	0.063	13.1	0.3	0.2	11.4	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
DUF835	PF05763.7	gi|292656420|ref|YP_003536317.1|	-	0.066	12.7	0.1	5.8	6.4	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF835)
PhoH	PF02562.11	gi|292656420|ref|YP_003536317.1|	-	0.068	12.4	0.2	0.21	10.7	0.0	2.0	2	0	0	2	2	2	0	PhoH-like	protein
AAA_22	PF13401.1	gi|292656421|ref|YP_003536318.1|	-	2.8e-17	63.1	0.0	6.2e-17	61.9	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292656421|ref|YP_003536318.1|	-	4.5e-16	59.3	0.2	4e-15	56.2	0.1	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|292656421|ref|YP_003536318.1|	-	2.2e-09	37.3	0.0	3.3e-08	33.5	0.0	2.0	1	1	0	1	1	1	1	Archaeal	ATPase
Bac_DnaA	PF00308.13	gi|292656421|ref|YP_003536318.1|	-	4.6e-09	36.2	0.0	4.2e-06	26.5	0.0	2.1	2	0	0	2	2	2	2	Bacterial	dnaA	protein
AAA	PF00004.24	gi|292656421|ref|YP_003536318.1|	-	3e-06	27.4	0.0	7e-06	26.2	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292656421|ref|YP_003536318.1|	-	3e-05	23.7	0.0	5.9e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|292656421|ref|YP_003536318.1|	-	4.7e-05	23.0	0.0	7.6e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activ_2	PF14532.1	gi|292656421|ref|YP_003536318.1|	-	0.00024	21.1	0.0	0.0019	18.2	0.0	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_14	PF13173.1	gi|292656421|ref|YP_003536318.1|	-	0.0003	20.6	0.0	0.00065	19.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|292656421|ref|YP_003536318.1|	-	0.0004	19.3	0.0	0.00055	18.8	0.0	1.4	1	1	0	1	1	1	1	NB-ARC	domain
AAA_17	PF13207.1	gi|292656421|ref|YP_003536318.1|	-	0.00083	20.1	0.0	0.0014	19.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|292656421|ref|YP_003536318.1|	-	0.0013	17.7	0.0	0.0027	16.6	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.21	gi|292656421|ref|YP_003536318.1|	-	0.0014	18.1	0.0	0.0021	17.5	0.0	1.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|292656421|ref|YP_003536318.1|	-	0.0015	18.1	0.0	0.0025	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AFG1_ATPase	PF03969.11	gi|292656421|ref|YP_003536318.1|	-	0.0045	15.8	0.0	0.0071	15.1	0.0	1.3	1	0	0	1	1	1	1	AFG1-like	ATPase
RNA_helicase	PF00910.17	gi|292656421|ref|YP_003536318.1|	-	0.0054	16.8	0.0	0.013	15.6	0.0	1.7	2	0	0	2	2	1	1	RNA	helicase
KAP_NTPase	PF07693.9	gi|292656421|ref|YP_003536318.1|	-	0.0075	15.3	0.0	0.018	14.0	0.0	1.6	1	1	1	2	2	2	1	KAP	family	P-loop	domain
RuvB_N	PF05496.7	gi|292656421|ref|YP_003536318.1|	-	0.0084	15.1	0.0	0.018	14.1	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
NTPase_1	PF03266.10	gi|292656421|ref|YP_003536318.1|	-	0.009	15.7	0.0	0.018	14.7	0.0	1.5	1	0	0	1	1	1	1	NTPase
Barstar	PF01337.13	gi|292656421|ref|YP_003536318.1|	-	0.054	13.3	0.0	0.18	11.6	0.0	1.9	2	0	0	2	2	2	0	Barstar	(barnase	inhibitor)
AAA_10	PF12846.2	gi|292656421|ref|YP_003536318.1|	-	0.057	12.8	0.1	0.52	9.6	0.0	2.3	1	1	0	2	2	2	0	AAA-like	domain
Rad17	PF03215.10	gi|292656421|ref|YP_003536318.1|	-	0.058	12.0	0.0	0.55	8.8	0.0	2.1	2	1	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_19	PF13245.1	gi|292656421|ref|YP_003536318.1|	-	0.065	13.0	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
ATP_bind_1	PF03029.12	gi|292656421|ref|YP_003536318.1|	-	0.071	12.6	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.1	gi|292656421|ref|YP_003536318.1|	-	0.096	12.2	0.0	0.22	11.1	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
Amido_AtzD_TrzD	PF09663.5	gi|292656421|ref|YP_003536318.1|	-	0.11	11.0	0.0	3.4	6.1	0.0	2.1	2	0	0	2	2	2	0	Amidohydrolase	ring-opening	protein	(Amido_AtzD_TrzD)
NOA36	PF06524.7	gi|292656422|ref|YP_003536319.1|	-	2.2	7.4	5.3	3.1	6.9	3.7	1.1	1	0	0	1	1	1	0	NOA36	protein
AA_permease	PF00324.16	gi|292656423|ref|YP_003536320.1|	-	6.5e-11	41.2	10.9	7.3e-11	41.0	7.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.1	gi|292656423|ref|YP_003536320.1|	-	2.4e-09	36.2	13.7	2.7e-09	36.0	9.5	1.0	1	0	0	1	1	1	1	Amino	acid	permease
HTH_10	PF04967.7	gi|292656424|ref|YP_003536321.1|	-	4.4e-17	61.4	0.1	6.9e-17	60.7	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|292656424|ref|YP_003536321.1|	-	0.0044	16.6	0.9	0.025	14.2	0.1	2.4	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|292656424|ref|YP_003536321.1|	-	0.0064	16.2	0.1	0.018	14.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656424|ref|YP_003536321.1|	-	0.036	13.7	0.1	0.07	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|292656424|ref|YP_003536321.1|	-	0.043	13.2	0.1	0.073	12.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|292656424|ref|YP_003536321.1|	-	0.081	12.5	0.1	0.22	11.1	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
DS	PF01916.12	gi|292656425|ref|YP_003536322.1|	-	2.6e-74	250.0	0.0	1.7e-51	175.1	0.0	2.0	2	0	0	2	2	2	2	Deoxyhypusine	synthase
NIF3	PF01784.13	gi|292656426|ref|YP_003536323.1|	-	1.3e-50	172.2	0.0	1.6e-50	171.9	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
Usp	PF00582.21	gi|292656426|ref|YP_003536323.1|	-	0.027	14.6	0.8	0.3	11.2	0.1	2.2	2	0	0	2	2	2	0	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|292656426|ref|YP_003536323.1|	-	0.032	13.5	0.3	0.21	10.8	0.1	2.3	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Arginase	PF00491.16	gi|292656427|ref|YP_003536324.1|	-	9.7e-58	195.6	2.4	1.1e-57	195.4	1.7	1.0	1	0	0	1	1	1	1	Arginase	family
eIF-5a	PF01287.15	gi|292656428|ref|YP_003536325.1|	-	7e-07	29.1	0.6	1.5e-06	28.0	0.4	1.6	1	1	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|292656428|ref|YP_003536325.1|	-	0.011	15.6	0.0	0.032	14.0	0.0	1.7	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	KOW-like	domain
ABC1	PF03109.11	gi|292656430|ref|YP_003536327.1|	-	6.6e-28	97.0	0.0	1.7e-27	95.7	0.0	1.7	2	0	0	2	2	2	1	ABC1	family
APH	PF01636.18	gi|292656430|ref|YP_003536327.1|	-	0.00067	19.4	1.1	0.1	12.2	0.4	2.8	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
DUF1469	PF07332.6	gi|292656430|ref|YP_003536327.1|	-	0.0023	17.6	0.3	0.0082	15.8	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1469)
Rhomboid	PF01694.17	gi|292656430|ref|YP_003536327.1|	-	0.0042	17.1	0.1	0.0073	16.3	0.1	1.3	1	0	0	1	1	1	1	Rhomboid	family
HSP20	PF00011.16	gi|292656431|ref|YP_003536328.1|	-	6.3e-11	42.0	0.0	7.2e-11	41.8	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|292656431|ref|YP_003536328.1|	-	0.025	14.0	0.0	0.03	13.7	0.0	1.1	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
MoeA_N	PF03453.12	gi|292656432|ref|YP_003536329.1|	-	2.8e-42	143.8	0.6	4.5e-42	143.1	0.4	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|292656432|ref|YP_003536329.1|	-	6.6e-29	100.1	0.3	1.1e-28	99.3	0.2	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|292656432|ref|YP_003536329.1|	-	2.9e-19	68.8	0.0	1.2e-18	66.7	0.0	2.2	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
MoeA_N	PF03453.12	gi|292656433|ref|YP_003536330.1|	-	3.6e-47	159.7	2.1	6.6e-47	158.8	1.5	1.5	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|292656433|ref|YP_003536330.1|	-	1.3e-27	96.0	0.0	2.2e-27	95.2	0.0	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.2	gi|292656433|ref|YP_003536330.1|	-	2.1e-26	92.0	0.1	8e-26	90.1	0.1	1.9	1	1	0	1	1	1	1	PBP	superfamily	domain
MoeA_C	PF03454.10	gi|292656433|ref|YP_003536330.1|	-	1.9e-15	56.5	0.5	5.6e-15	55.0	0.1	2.1	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.1	gi|292656433|ref|YP_003536330.1|	-	0.00018	21.2	0.1	0.00039	20.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Response_reg	PF00072.19	gi|292656434|ref|YP_003536331.1|	-	1.5e-11	44.3	0.1	3.2e-11	43.2	0.1	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HAD_2	PF13419.1	gi|292656435|ref|YP_003536332.1|	-	1.3e-24	87.3	0.1	1.6e-24	87.0	0.1	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292656435|ref|YP_003536332.1|	-	1.5e-07	31.7	0.4	2.9e-07	30.8	0.3	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292656435|ref|YP_003536332.1|	-	0.00027	21.3	0.0	0.03	14.7	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
adh_short	PF00106.20	gi|292656435|ref|YP_003536332.1|	-	0.027	14.4	0.0	0.049	13.5	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
NIF	PF03031.13	gi|292656435|ref|YP_003536332.1|	-	0.12	11.9	0.0	12	5.5	0.0	2.1	2	0	0	2	2	2	0	NLI	interacting	factor-like	phosphatase
Hydrolase_like	PF13242.1	gi|292656435|ref|YP_003536332.1|	-	0.12	12.0	0.2	0.22	11.2	0.1	1.5	1	0	0	1	1	1	0	HAD-hyrolase-like
Pterin_4a	PF01329.14	gi|292656437|ref|YP_003536334.1|	-	1.1e-22	79.5	0.0	1.2e-22	79.4	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
tRNA_anti-codon	PF01336.20	gi|292656438|ref|YP_003536335.1|	-	0.0014	18.3	1.0	0.0019	17.9	0.1	1.6	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
GIDE	PF12483.3	gi|292656438|ref|YP_003536335.1|	-	0.018	14.4	0.7	0.029	13.7	0.0	1.6	2	0	0	2	2	2	0	E3	Ubiquitin	ligase
GlutR_N	PF05201.10	gi|292656439|ref|YP_003536336.1|	-	5.7e-35	120.1	1.2	7.9e-35	119.6	0.1	1.7	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|292656439|ref|YP_003536336.1|	-	3.5e-30	104.8	0.2	8e-30	103.6	0.0	1.7	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.15	gi|292656439|ref|YP_003536336.1|	-	1.2e-20	73.3	0.9	3.1e-20	71.9	0.6	1.8	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.12	gi|292656439|ref|YP_003536336.1|	-	0.0022	18.4	1.5	0.0089	16.4	0.1	2.5	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ThiF	PF00899.16	gi|292656439|ref|YP_003536336.1|	-	0.0031	17.3	0.8	0.0093	15.7	0.4	2.0	1	1	0	1	1	1	1	ThiF	family
NAD_binding_7	PF13241.1	gi|292656439|ref|YP_003536336.1|	-	0.1	12.8	0.6	0.28	11.4	0.4	1.9	1	1	0	1	1	1	0	Putative	NAD(P)-binding
NAD_binding_7	PF13241.1	gi|292656440|ref|YP_003536337.1|	-	5.9e-23	81.0	0.1	1e-22	80.3	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.1	gi|292656440|ref|YP_003536337.1|	-	2.8e-05	22.9	0.0	0.00041	19.2	0.0	2.4	2	0	0	2	2	2	1	Sirohaem	biosynthesis	protein	central
TrkA_N	PF02254.13	gi|292656440|ref|YP_003536337.1|	-	0.045	13.7	2.2	0.52	10.3	1.0	2.5	2	1	0	2	2	2	0	TrkA-N	domain
FlaF	PF07309.6	gi|292656440|ref|YP_003536337.1|	-	0.098	12.5	0.2	0.16	11.8	0.2	1.3	1	0	0	1	1	1	0	Flagellar	protein	FlaF
Prenyltransf	PF01255.14	gi|292656443|ref|YP_003536340.1|	-	1.6e-67	226.9	0.0	2e-67	226.5	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Serpin	PF00079.15	gi|292656444|ref|YP_003536341.1|	-	4.2e-111	371.6	0.0	5e-111	371.4	0.0	1.1	1	0	0	1	1	1	1	Serpin	(serine	protease	inhibitor)
TAT_signal	PF10518.4	gi|292656444|ref|YP_003536341.1|	-	0.061	13.3	0.9	0.061	13.3	0.6	2.6	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Prenyltransf	PF01255.14	gi|292656446|ref|YP_003536343.1|	-	8.4e-26	90.4	0.0	1.2e-25	89.9	0.0	1.2	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
DUF92	PF01940.11	gi|292656447|ref|YP_003536344.1|	-	8.5e-59	198.4	23.0	8.5e-59	198.4	15.9	2.8	3	1	0	3	3	3	1	Integral	membrane	protein	DUF92
V_ATPase_I	PF01496.14	gi|292656447|ref|YP_003536344.1|	-	1	7.1	2.6	1.4	6.6	1.8	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Acetyltransf_1	PF00583.19	gi|292656448|ref|YP_003536345.1|	-	1.7e-10	40.7	0.0	3.3e-10	39.8	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656448|ref|YP_003536345.1|	-	7e-08	32.6	0.0	9.4e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656448|ref|YP_003536345.1|	-	1.3e-06	28.0	0.0	2.2e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.1	gi|292656448|ref|YP_003536345.1|	-	3.3e-05	23.9	0.0	4.7e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656448|ref|YP_003536345.1|	-	0.0052	16.9	0.0	0.011	15.8	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656448|ref|YP_003536345.1|	-	0.013	15.3	0.0	0.12	12.1	0.0	2.2	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292656448|ref|YP_003536345.1|	-	0.013	15.3	0.0	0.047	13.5	0.0	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Toprim_4	PF13662.1	gi|292656449|ref|YP_003536346.1|	-	3.7e-11	42.8	1.0	2.1e-10	40.4	0.7	2.4	1	1	0	1	1	1	1	Toprim	domain
Toprim	PF01751.17	gi|292656449|ref|YP_003536346.1|	-	0.027	14.4	0.1	0.16	11.9	0.1	2.3	1	1	0	1	1	1	0	Toprim	domain
Toprim_2	PF13155.1	gi|292656449|ref|YP_003536346.1|	-	0.039	14.2	0.0	0.093	13.0	0.0	1.6	1	0	0	1	1	1	0	Toprim-like
AP_endonuc_2	PF01261.19	gi|292656450|ref|YP_003536347.1|	-	4e-27	94.8	3.4	5.2e-27	94.5	2.4	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DUF3311	PF11755.3	gi|292656451|ref|YP_003536348.1|	-	2.4e-13	49.3	11.4	2.5e-13	49.3	7.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.7	gi|292656451|ref|YP_003536348.1|	-	0.64	9.5	2.4	0.78	9.2	1.7	1.2	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
FA_desaturase	PF00487.19	gi|292656451|ref|YP_003536348.1|	-	3.1	7.1	11.0	3.3	7.0	7.6	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
SSF	PF00474.12	gi|292656452|ref|YP_003536349.1|	-	3.3e-46	157.7	29.9	4.8e-46	157.2	20.7	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Acetyltransf_1	PF00583.19	gi|292656454|ref|YP_003536351.1|	-	6e-19	67.8	0.1	7.9e-19	67.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656454|ref|YP_003536351.1|	-	4.2e-08	33.3	0.2	7e-08	32.6	0.1	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656454|ref|YP_003536351.1|	-	4e-06	27.0	0.0	4.7e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656454|ref|YP_003536351.1|	-	1.4e-05	25.1	0.0	1.7e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656454|ref|YP_003536351.1|	-	6.7e-05	22.5	0.0	0.00015	21.4	0.0	1.5	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|292656454|ref|YP_003536351.1|	-	6.9e-05	22.7	0.0	8.9e-05	22.4	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656454|ref|YP_003536351.1|	-	0.00033	20.5	0.1	0.0015	18.4	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656454|ref|YP_003536351.1|	-	0.034	14.0	0.0	0.071	13.0	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
YqcI_YcgG	PF08892.6	gi|292656455|ref|YP_003536352.1|	-	3.7e-74	248.9	0.0	4.4e-74	248.7	0.0	1.0	1	0	0	1	1	1	1	YqcI/YcgG	family
Isochorismatase	PF00857.15	gi|292656456|ref|YP_003536353.1|	-	7.5e-37	126.9	0.1	1.3e-36	126.1	0.0	1.4	1	1	0	1	1	1	1	Isochorismatase	family
DUF4282	PF14110.1	gi|292656457|ref|YP_003536354.1|	-	3.3	7.9	9.7	39	4.5	6.7	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
Sulfate_transp	PF00916.15	gi|292656458|ref|YP_003536355.1|	-	2.4e-09	36.6	14.1	9.4e-09	34.6	6.4	2.5	1	1	0	2	2	2	2	Sulfate	transporter	family
DUF973	PF06157.6	gi|292656458|ref|YP_003536355.1|	-	0.27	10.1	5.4	0.78	8.6	3.7	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF4491	PF14898.1	gi|292656458|ref|YP_003536355.1|	-	1.8	8.7	7.2	0.21	11.7	0.2	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4491)
DUF1405	PF07187.6	gi|292656463|ref|YP_003536360.1|	-	9.9e-48	161.9	14.4	1.4e-47	161.4	10.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
SOR_SNZ	PF01680.12	gi|292656464|ref|YP_003536361.1|	-	1.5e-102	341.5	4.8	2.1e-102	341.1	3.3	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|292656464|ref|YP_003536361.1|	-	7e-10	38.3	3.3	6.1e-05	22.2	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|292656464|ref|YP_003536361.1|	-	0.018	13.9	1.4	0.94	8.2	0.2	2.3	1	1	1	2	2	2	0	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.16	gi|292656464|ref|YP_003536361.1|	-	0.024	13.6	0.0	0.25	10.3	0.0	2.1	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
Usp	PF00582.21	gi|292656465|ref|YP_003536362.1|	-	1.2e-16	61.2	0.5	1.5e-16	60.8	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|292656465|ref|YP_003536362.1|	-	0.0031	17.2	0.2	0.0044	16.7	0.1	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
GHMP_kinases_N	PF00288.21	gi|292656466|ref|YP_003536363.1|	-	4.6e-16	58.6	1.8	1.4e-15	57.0	1.3	1.9	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|292656466|ref|YP_003536363.1|	-	2.3e-06	27.7	0.2	4.9e-06	26.6	0.1	1.5	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
HATPase_c	PF02518.21	gi|292656467|ref|YP_003536364.1|	-	6.2e-17	61.3	1.9	2.8e-16	59.2	1.3	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292656467|ref|YP_003536364.1|	-	1.1e-15	57.3	0.3	2.6e-15	56.1	0.2	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|292656467|ref|YP_003536364.1|	-	6e-12	45.5	0.3	2.4e-11	43.6	0.2	2.0	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|292656467|ref|YP_003536364.1|	-	3.4e-11	42.9	0.0	6.1e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|292656467|ref|YP_003536364.1|	-	6.3e-06	25.8	0.2	2.6e-05	23.9	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS_9	PF13426.1	gi|292656467|ref|YP_003536364.1|	-	8e-06	26.1	0.0	1.9e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|292656467|ref|YP_003536364.1|	-	0.00071	19.3	0.1	0.002	17.9	0.1	1.7	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|292656467|ref|YP_003536364.1|	-	0.016	14.8	0.0	0.027	14.1	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Amino_oxidase	PF01593.19	gi|292656468|ref|YP_003536365.1|	-	5.5e-27	94.9	1.0	8e-23	81.2	0.1	2.1	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|292656468|ref|YP_003536365.1|	-	8.1e-16	57.8	0.3	3e-15	55.9	0.2	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|292656468|ref|YP_003536365.1|	-	6.3e-10	38.4	2.6	2.6e-07	29.8	0.1	2.5	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|292656468|ref|YP_003536365.1|	-	5.7e-06	25.4	3.4	1e-05	24.5	1.0	2.0	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|292656468|ref|YP_003536365.1|	-	2.3e-05	24.1	0.3	0.023	14.4	0.0	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.9	gi|292656468|ref|YP_003536365.1|	-	3.9e-05	23.6	0.1	0.0011	18.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292656468|ref|YP_003536365.1|	-	0.00014	22.1	0.4	0.0015	18.8	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|292656468|ref|YP_003536365.1|	-	0.00018	20.7	0.1	0.00052	19.2	0.0	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292656468|ref|YP_003536365.1|	-	0.00045	18.8	2.3	0.0027	16.2	0.6	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|292656468|ref|YP_003536365.1|	-	0.00048	20.2	0.8	0.00059	19.9	0.1	1.5	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|292656468|ref|YP_003536365.1|	-	0.0022	17.1	1.0	0.0067	15.5	0.3	2.1	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.17	gi|292656468|ref|YP_003536365.1|	-	0.0055	15.6	0.1	0.0055	15.6	0.1	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|292656468|ref|YP_003536365.1|	-	0.0086	15.0	0.0	0.14	11.0	0.0	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|292656468|ref|YP_003536365.1|	-	0.029	13.4	0.9	0.056	12.4	0.4	1.6	2	0	0	2	2	2	0	FAD	binding	domain
3HCDH_N	PF02737.13	gi|292656468|ref|YP_003536365.1|	-	0.051	13.2	0.0	0.084	12.5	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.9	gi|292656468|ref|YP_003536365.1|	-	0.087	11.4	0.4	0.31	9.5	0.0	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
NAD_Gly3P_dh_N	PF01210.18	gi|292656468|ref|YP_003536365.1|	-	0.12	12.1	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
YjeF_N	PF03853.10	gi|292656468|ref|YP_003536365.1|	-	0.15	11.6	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
TetR_N	PF00440.18	gi|292656469|ref|YP_003536366.1|	-	3.6e-11	42.5	0.2	6.4e-11	41.7	0.2	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|292656469|ref|YP_003536366.1|	-	3.5e-10	39.9	2.9	3.5e-10	39.9	2.0	2.1	2	1	0	2	2	2	1	Bacterial	transcriptional	repressor
MatE	PF01554.13	gi|292656470|ref|YP_003536367.1|	-	5.4e-64	214.7	26.2	1.4e-34	119.1	5.2	2.5	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|292656470|ref|YP_003536367.1|	-	1.1e-07	31.7	22.7	5.7e-07	29.4	6.6	5.3	4	3	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF4225	PF13988.1	gi|292656470|ref|YP_003536367.1|	-	0.063	12.7	1.0	0.11	11.9	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4225)
HTH_20	PF12840.2	gi|292656472|ref|YP_003536369.1|	-	2.3e-07	30.5	0.0	4.9e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TF_Zn_Ribbon	PF08271.7	gi|292656472|ref|YP_003536369.1|	-	0.067	12.5	2.7	3.5	7.0	0.1	2.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ZPR1	PF03367.8	gi|292656472|ref|YP_003536369.1|	-	0.068	12.3	0.0	0.12	11.5	0.0	1.4	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
DZR	PF12773.2	gi|292656472|ref|YP_003536369.1|	-	0.076	12.8	7.2	1.5	8.7	0.3	3.1	3	1	0	3	3	3	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|292656472|ref|YP_003536369.1|	-	0.099	12.4	0.6	0.099	12.4	0.4	2.6	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
C1_1	PF00130.17	gi|292656472|ref|YP_003536369.1|	-	0.43	10.3	0.1	0.43	10.3	0.0	2.8	3	1	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Lar_restr_allev	PF14354.1	gi|292656472|ref|YP_003536369.1|	-	2.5	8.4	9.1	6.5	7.1	0.6	3.2	3	1	0	3	3	3	0	Restriction	alleviation	protein	Lar
Pyr_redox_2	PF07992.9	gi|292656473|ref|YP_003536370.1|	-	3.7e-29	102.0	0.1	5.1e-29	101.6	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292656473|ref|YP_003536370.1|	-	7.9e-09	35.8	0.1	0.00011	22.5	0.0	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292656473|ref|YP_003536370.1|	-	8.7e-07	29.2	0.0	0.00057	19.9	0.0	3.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292656473|ref|YP_003536370.1|	-	9.1e-05	21.5	0.3	0.33	9.8	0.0	3.6	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.1	gi|292656473|ref|YP_003536370.1|	-	0.00031	20.5	4.3	0.32	10.7	0.0	3.4	4	0	0	4	4	4	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|292656473|ref|YP_003536370.1|	-	0.002	18.1	0.1	0.072	13.1	0.0	3.0	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|292656473|ref|YP_003536370.1|	-	0.013	13.9	0.0	1.9	6.9	0.0	3.2	3	1	1	4	4	4	0	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|292656473|ref|YP_003536370.1|	-	0.02	13.7	0.3	0.23	10.3	0.0	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
FAD_binding_2	PF00890.19	gi|292656473|ref|YP_003536370.1|	-	0.34	9.7	4.0	4.3	6.0	0.0	3.1	2	1	0	3	3	3	0	FAD	binding	domain
DUF1707	PF08044.6	gi|292656474|ref|YP_003536371.1|	-	0.086	12.5	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
GCHY-1	PF02649.9	gi|292656476|ref|YP_003536373.1|	-	1.2e-86	290.4	1.1	1.3e-86	290.2	0.7	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
TrmB	PF01978.14	gi|292656477|ref|YP_003536374.1|	-	1.6e-19	69.3	0.2	3.7e-19	68.1	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_9	PF08221.6	gi|292656477|ref|YP_003536374.1|	-	0.037	13.9	0.0	0.072	12.9	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
FUSC	PF04632.7	gi|292656477|ref|YP_003536374.1|	-	0.27	9.6	2.9	0.29	9.5	2.0	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Thioredox_DsbH	PF03190.10	gi|292656478|ref|YP_003536375.1|	-	5.7e-31	107.4	0.0	8.8e-31	106.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|292656478|ref|YP_003536375.1|	-	2.1e-14	53.2	0.0	6.5e-14	51.7	0.0	1.8	2	0	0	2	2	2	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|292656478|ref|YP_003536375.1|	-	7.6e-07	29.3	0.0	2.9e-06	27.4	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|292656478|ref|YP_003536375.1|	-	9.3e-07	28.4	0.0	1.6e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Glyco_hydro_76	PF03663.9	gi|292656478|ref|YP_003536375.1|	-	0.0017	17.7	0.3	0.68	9.2	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	hydrolase	family	76
DUF1680	PF07944.7	gi|292656478|ref|YP_003536375.1|	-	0.012	13.9	0.0	0.54	8.4	0.0	2.1	2	0	0	2	2	2	0	Putative	glycosyl	hydrolase	of	unknown	function	(DUF1680)
Thioredoxin_8	PF13905.1	gi|292656478|ref|YP_003536375.1|	-	0.021	14.9	0.0	0.8	9.8	0.0	2.2	1	1	1	2	2	2	0	Thioredoxin-like
Glyco_hydro_47	PF01532.15	gi|292656478|ref|YP_003536375.1|	-	0.069	11.8	0.0	9	4.8	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	47
FxsA	PF04186.8	gi|292656479|ref|YP_003536376.1|	-	7.3e-31	106.2	4.4	9.5e-31	105.9	3.1	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
Na_Ca_ex	PF01699.19	gi|292656482|ref|YP_003536379.1|	-	1.5e-39	134.8	23.9	1.5e-21	76.4	8.9	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Calcyon	PF06387.6	gi|292656482|ref|YP_003536379.1|	-	0.036	13.4	0.0	0.062	12.6	0.0	1.3	1	0	0	1	1	1	0	D1	dopamine	receptor-interacting	protein	(calcyon)
SCP2_2	PF13530.1	gi|292656483|ref|YP_003536380.1|	-	8e-61	205.1	4.3	1.2e-60	204.5	2.9	1.3	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_9	PF13527.1	gi|292656483|ref|YP_003536380.1|	-	7.4e-23	80.7	0.7	4.7e-21	74.9	0.0	2.8	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656483|ref|YP_003536380.1|	-	2.4e-05	24.4	0.0	0.0003	20.8	0.0	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656483|ref|YP_003536380.1|	-	0.0035	17.4	0.3	0.019	15.0	0.0	2.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292656483|ref|YP_003536380.1|	-	0.013	15.5	0.0	0.11	12.5	0.0	2.3	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	family
DUF3040	PF11239.3	gi|292656485|ref|YP_003536382.1|	-	0.11	12.5	2.0	0.16	12.0	1.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF2651	PF10852.3	gi|292656485|ref|YP_003536382.1|	-	0.26	11.6	2.7	0.39	11.1	1.8	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2651)
PGPGW	PF09656.5	gi|292656485|ref|YP_003536382.1|	-	0.96	8.7	5.0	4.6	6.6	0.2	2.7	3	0	0	3	3	3	0	Putative	transmembrane	protein	(PGPGW)
Peptidase_S66	PF02016.10	gi|292656487|ref|YP_003536384.1|	-	8.6e-60	202.0	0.0	9.8e-60	201.9	0.0	1.0	1	0	0	1	1	1	1	LD-carboxypeptidase
CPSase_L_D2	PF02786.12	gi|292656488|ref|YP_003536385.1|	-	1.5e-95	318.4	0.1	5.3e-57	192.5	0.0	2.7	2	1	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|292656488|ref|YP_003536385.1|	-	2.5e-44	149.8	0.2	7.9e-22	77.4	0.0	2.6	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|292656488|ref|YP_003536385.1|	-	5.8e-31	107.6	0.0	3.8e-18	65.8	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
CPSase_L_D3	PF02787.14	gi|292656488|ref|YP_003536385.1|	-	1.6e-22	79.5	0.0	3.3e-22	78.5	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATPgrasp_Ter	PF15632.1	gi|292656488|ref|YP_003536385.1|	-	1.4e-20	73.2	0.0	1.4e-10	40.5	0.0	3.8	3	1	0	3	3	3	3	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|292656488|ref|YP_003536385.1|	-	1.4e-12	47.2	0.0	1e-07	31.4	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|292656488|ref|YP_003536385.1|	-	1.5e-11	44.1	0.0	3e-08	33.2	0.0	2.5	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.9	gi|292656488|ref|YP_003536385.1|	-	9.5e-10	38.5	0.1	0.00061	19.6	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
RimK	PF08443.6	gi|292656488|ref|YP_003536385.1|	-	0.058	12.8	0.0	0.52	9.7	0.0	2.5	2	0	0	2	2	2	0	RimK-like	ATP-grasp	domain
NAD_binding_10	PF13460.1	gi|292656489|ref|YP_003536386.1|	-	3e-30	105.5	5.5	3.8e-30	105.2	3.8	1.1	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|292656489|ref|YP_003536386.1|	-	5.3e-13	48.7	0.0	7.6e-13	48.2	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.16	gi|292656489|ref|YP_003536386.1|	-	7.9e-11	41.8	0.2	1.1e-10	41.3	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|292656489|ref|YP_003536386.1|	-	2.5e-07	29.6	0.1	3.5e-07	29.2	0.1	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.13	gi|292656489|ref|YP_003536386.1|	-	3.4e-05	23.8	0.5	6.5e-05	22.9	0.4	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_4	PF07993.7	gi|292656489|ref|YP_003536386.1|	-	0.0046	15.9	0.2	0.56	9.0	0.1	2.3	2	1	0	2	2	2	2	Male	sterility	protein
Semialdhyde_dh	PF01118.19	gi|292656489|ref|YP_003536386.1|	-	0.015	15.6	0.3	0.022	15.0	0.2	1.3	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|292656489|ref|YP_003536386.1|	-	0.029	14.0	3.9	0.18	11.4	1.4	2.4	2	0	0	2	2	2	0	KR	domain
DapB_N	PF01113.15	gi|292656489|ref|YP_003536386.1|	-	0.042	13.7	0.1	0.068	13.0	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.20	gi|292656489|ref|YP_003536386.1|	-	0.16	11.8	9.8	1.8	8.4	6.3	2.6	1	1	1	2	2	2	0	short	chain	dehydrogenase
NAD_kinase	PF01513.16	gi|292656490|ref|YP_003536387.1|	-	2.2e-36	125.1	0.2	2.6e-36	124.8	0.2	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|292656490|ref|YP_003536387.1|	-	0.023	14.1	0.5	0.052	12.9	0.2	1.7	2	0	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
KaiC	PF06745.8	gi|292656491|ref|YP_003536388.1|	-	8.5e-54	182.0	0.0	9.6e-54	181.8	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|292656491|ref|YP_003536388.1|	-	9.6e-10	38.1	0.0	1.3e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|292656491|ref|YP_003536388.1|	-	1.6e-05	23.4	0.3	5.1e-05	21.7	0.2	1.6	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.10	gi|292656491|ref|YP_003536388.1|	-	0.00013	20.9	0.0	0.024	13.5	0.0	2.1	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
RecA	PF00154.16	gi|292656491|ref|YP_003536388.1|	-	0.0013	17.8	0.0	0.0021	17.2	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_24	PF13479.1	gi|292656491|ref|YP_003536388.1|	-	0.0099	15.4	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|292656491|ref|YP_003536388.1|	-	0.016	14.6	0.0	0.025	13.9	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.1	gi|292656491|ref|YP_003536388.1|	-	0.019	14.5	0.0	0.031	13.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|292656491|ref|YP_003536388.1|	-	0.033	13.6	0.0	0.04	13.3	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
PhoH	PF02562.11	gi|292656491|ref|YP_003536388.1|	-	0.046	12.9	0.1	0.1	11.8	0.1	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_14	PF13173.1	gi|292656491|ref|YP_003536388.1|	-	0.046	13.6	0.0	0.087	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|292656491|ref|YP_003536388.1|	-	0.055	13.6	0.1	0.14	12.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
PPV_E1_C	PF00519.12	gi|292656491|ref|YP_003536388.1|	-	0.11	11.1	0.0	0.14	10.6	0.0	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
Nitroreductase	PF00881.19	gi|292656492|ref|YP_003536389.1|	-	1.3e-31	109.6	0.0	2.1e-31	108.9	0.0	1.3	1	1	0	1	1	1	1	Nitroreductase	family
Usp	PF00582.21	gi|292656493|ref|YP_003536390.1|	-	1.2e-27	96.7	1.5	1.5e-27	96.5	1.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Chorismate_synt	PF01264.16	gi|292656493|ref|YP_003536390.1|	-	0.12	10.8	0.0	6.8	5.0	0.0	2.0	2	0	0	2	2	2	0	Chorismate	synthase
AAA_10	PF12846.2	gi|292656494|ref|YP_003536391.1|	-	7e-20	71.6	0.0	4.6e-19	68.9	0.0	2.0	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|292656494|ref|YP_003536391.1|	-	2.3e-11	43.9	0.0	4.2e-11	43.0	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|292656494|ref|YP_003536391.1|	-	4.6e-08	31.8	0.3	0.00013	20.4	0.1	2.4	2	1	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|292656494|ref|YP_003536391.1|	-	9.1e-06	25.2	0.0	0.0087	15.5	0.0	2.6	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
T2SE	PF00437.15	gi|292656494|ref|YP_003536391.1|	-	0.0017	17.2	0.0	0.003	16.5	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|292656494|ref|YP_003536391.1|	-	0.0069	16.1	0.0	0.025	14.2	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
Zot	PF05707.7	gi|292656494|ref|YP_003536391.1|	-	0.0085	15.5	0.0	0.93	8.9	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TrwB_AAD_bind	PF10412.4	gi|292656494|ref|YP_003536391.1|	-	0.011	14.4	0.0	0.02	13.5	0.0	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|292656494|ref|YP_003536391.1|	-	0.019	15.1	0.0	0.12	12.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.24	gi|292656494|ref|YP_003536391.1|	-	0.041	13.3	0.1	0.93	8.9	0.0	2.2	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
Zeta_toxin	PF06414.7	gi|292656494|ref|YP_003536391.1|	-	0.076	12.1	0.0	0.15	11.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
HAS-barrel	PF09378.5	gi|292656494|ref|YP_003536391.1|	-	0.076	12.9	0.0	0.25	11.2	0.0	1.9	2	0	0	2	2	2	0	HAS	barrel	domain
AAA_18	PF13238.1	gi|292656494|ref|YP_003536391.1|	-	0.081	13.2	0.2	1.6	9.0	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
PepSY	PF03413.14	gi|292656495|ref|YP_003536392.1|	-	0.092	13.4	0.7	1.4	9.6	0.1	2.1	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
NurA	PF09376.5	gi|292656496|ref|YP_003536393.1|	-	2.1e-22	79.8	0.0	2.6e-22	79.4	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
HAD_2	PF13419.1	gi|292656497|ref|YP_003536394.1|	-	2.6e-28	99.4	0.0	3.2e-28	99.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292656497|ref|YP_003536394.1|	-	1.7e-11	44.9	0.4	3.3e-11	44.0	0.2	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292656497|ref|YP_003536394.1|	-	7.1e-11	41.6	0.2	2e-10	40.2	0.2	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
5_nucleotid	PF05761.9	gi|292656497|ref|YP_003536394.1|	-	0.0051	15.3	0.3	0.38	9.2	0.0	2.6	2	1	1	3	3	3	2	5'	nucleotidase	family
DUF2240	PF09999.4	gi|292656499|ref|YP_003536396.1|	-	4.1e-49	165.7	0.2	4.6e-49	165.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
Ribosomal_S8e	PF01201.17	gi|292656500|ref|YP_003536397.1|	-	1.3e-33	115.9	2.9	1.4e-33	115.8	2.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
PhoU	PF01895.14	gi|292656501|ref|YP_003536398.1|	-	2.7e-22	78.9	6.0	2.2e-18	66.4	0.9	2.4	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|292656501|ref|YP_003536398.1|	-	1.2e-11	44.0	0.0	2.9e-11	42.8	0.0	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PBP_like_2	PF12849.2	gi|292656502|ref|YP_003536399.1|	-	4.1e-32	111.7	2.6	6.6e-32	111.0	1.8	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|292656502|ref|YP_003536399.1|	-	5.2e-17	61.4	0.0	1.8e-16	59.6	0.0	1.9	1	1	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.4	gi|292656502|ref|YP_003536399.1|	-	0.083	12.9	3.2	0.21	11.6	2.2	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_11	PF13531.1	gi|292656502|ref|YP_003536399.1|	-	0.097	12.2	0.1	0.21	11.1	0.0	1.6	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.4	gi|292656502|ref|YP_003536399.1|	-	0.14	11.3	0.1	0.25	10.5	0.1	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.17	gi|292656503|ref|YP_003536400.1|	-	3.5e-17	62.5	17.3	3.5e-17	62.5	12.0	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|292656504|ref|YP_003536401.1|	-	5.8e-22	78.1	12.8	5.8e-22	78.1	8.9	4.1	2	2	2	4	4	4	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|292656505|ref|YP_003536402.1|	-	1.5e-30	106.2	0.0	3.1e-30	105.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656505|ref|YP_003536402.1|	-	6.9e-14	52.4	0.0	4.1e-11	43.3	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292656505|ref|YP_003536402.1|	-	3.3e-08	33.0	0.2	6.3e-07	28.8	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|292656505|ref|YP_003536402.1|	-	0.0002	20.5	0.0	0.07	12.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656505|ref|YP_003536402.1|	-	0.00032	20.8	0.0	0.0007	19.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|292656505|ref|YP_003536402.1|	-	0.00045	19.6	0.0	0.0012	18.3	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|292656505|ref|YP_003536402.1|	-	0.00094	18.4	0.0	0.0018	17.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|292656505|ref|YP_003536402.1|	-	0.0037	17.6	0.0	0.0081	16.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292656505|ref|YP_003536402.1|	-	0.0044	16.8	0.0	0.015	15.2	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|292656505|ref|YP_003536402.1|	-	0.006	16.0	0.3	0.081	12.3	0.1	2.1	1	1	1	2	2	2	1	AAA-like	domain
DeoRC	PF00455.17	gi|292656505|ref|YP_003536402.1|	-	0.0064	16.1	0.0	0.0097	15.5	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
AAA_16	PF13191.1	gi|292656505|ref|YP_003536402.1|	-	0.0067	16.4	1.1	0.076	13.0	0.7	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|292656505|ref|YP_003536402.1|	-	0.0075	15.6	0.3	0.15	11.4	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|292656505|ref|YP_003536402.1|	-	0.021	14.5	0.0	3.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|292656505|ref|YP_003536402.1|	-	0.047	13.2	0.0	2.8	7.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DUF552	PF04472.7	gi|292656505|ref|YP_003536402.1|	-	0.07	13.0	0.2	0.17	11.8	0.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF552)
ABC_ATPase	PF09818.4	gi|292656505|ref|YP_003536402.1|	-	0.081	11.4	0.0	5.8	5.3	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_17	PF13207.1	gi|292656505|ref|YP_003536402.1|	-	0.098	13.4	0.7	0.31	11.8	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.10	gi|292656505|ref|YP_003536402.1|	-	0.11	11.1	0.0	0.54	8.8	0.0	1.9	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
YflT	PF11181.3	gi|292656505|ref|YP_003536402.1|	-	0.11	12.6	0.5	0.99	9.5	0.1	2.5	3	0	0	3	3	3	0	Heat	induced	stress	protein	YflT
PhoU	PF01895.14	gi|292656506|ref|YP_003536403.1|	-	5.5e-37	126.1	11.2	2.3e-19	69.5	1.5	2.1	2	0	0	2	2	2	2	PhoU	domain
AAA	PF00004.24	gi|292656507|ref|YP_003536404.1|	-	2.8e-101	334.9	0.0	1.4e-49	167.6	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|292656507|ref|YP_003536404.1|	-	9.6e-30	102.3	0.0	4.8e-29	100.1	0.0	2.2	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_5	PF07728.9	gi|292656507|ref|YP_003536404.1|	-	2e-15	56.7	1.5	8.1e-07	28.8	0.0	3.9	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|292656507|ref|YP_003536404.1|	-	4.1e-15	56.2	0.0	2.3e-07	31.0	0.0	3.3	2	1	0	2	2	2	2	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|292656507|ref|YP_003536404.1|	-	4.2e-15	55.4	0.0	5.2e-07	28.9	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
CDC48_2	PF02933.12	gi|292656507|ref|YP_003536404.1|	-	1e-14	53.9	0.1	6.9e-14	51.2	0.1	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.1	gi|292656507|ref|YP_003536404.1|	-	8e-14	51.9	1.2	0.00064	19.8	0.0	5.2	3	2	1	4	4	4	2	AAA	domain
AAA_17	PF13207.1	gi|292656507|ref|YP_003536404.1|	-	4e-13	50.2	0.1	8.3e-05	23.3	0.0	3.3	3	1	0	3	3	2	2	AAA	domain
AAA_2	PF07724.9	gi|292656507|ref|YP_003536404.1|	-	9.7e-13	48.3	0.0	1e-05	25.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
TIP49	PF06068.8	gi|292656507|ref|YP_003536404.1|	-	1.2e-11	43.9	0.0	2.4e-05	23.2	0.0	2.9	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|292656507|ref|YP_003536404.1|	-	1.9e-11	44.0	0.0	3.5e-05	23.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|292656507|ref|YP_003536404.1|	-	2e-09	37.4	0.0	0.0021	17.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|292656507|ref|YP_003536404.1|	-	8.2e-09	35.1	0.0	0.0036	16.7	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|292656507|ref|YP_003536404.1|	-	8.3e-09	35.0	3.9	0.0017	18.0	0.1	3.2	3	0	0	3	3	2	2	Part	of	AAA	domain
Zeta_toxin	PF06414.7	gi|292656507|ref|YP_003536404.1|	-	2e-08	33.5	0.1	0.0024	16.9	0.0	3.0	3	0	0	3	3	3	2	Zeta	toxin
AAA_18	PF13238.1	gi|292656507|ref|YP_003536404.1|	-	2.9e-08	34.0	0.0	0.0042	17.3	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|292656507|ref|YP_003536404.1|	-	1.9e-07	30.7	0.1	0.022	14.2	0.0	3.7	3	1	0	3	3	3	2	Sigma-54	interaction	domain
AAA_25	PF13481.1	gi|292656507|ref|YP_003536404.1|	-	4.2e-07	29.5	8.0	1.2	8.5	0.0	4.4	2	2	2	4	4	4	3	AAA	domain
AAA_28	PF13521.1	gi|292656507|ref|YP_003536404.1|	-	6.8e-07	29.3	0.0	0.012	15.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|292656507|ref|YP_003536404.1|	-	1.2e-06	27.9	0.1	0.037	13.1	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|292656507|ref|YP_003536404.1|	-	1.9e-06	28.0	0.0	0.087	12.9	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
PhoH	PF02562.11	gi|292656507|ref|YP_003536404.1|	-	3.9e-06	26.2	0.3	0.17	11.1	0.0	3.3	3	0	0	3	3	3	2	PhoH-like	protein
Arch_ATPase	PF01637.13	gi|292656507|ref|YP_003536404.1|	-	4.9e-06	26.4	0.0	0.088	12.4	0.0	3.8	2	2	1	3	3	3	2	Archaeal	ATPase
AAA_3	PF07726.6	gi|292656507|ref|YP_003536404.1|	-	6.8e-06	25.7	0.0	0.09	12.3	0.0	2.6	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|292656507|ref|YP_003536404.1|	-	6.8e-06	25.1	0.0	0.067	12.0	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
DUF815	PF05673.8	gi|292656507|ref|YP_003536404.1|	-	7.9e-06	24.9	0.0	0.096	11.5	0.0	2.6	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
KaiC	PF06745.8	gi|292656507|ref|YP_003536404.1|	-	8.3e-06	25.0	0.9	0.34	10.0	0.0	3.5	2	1	1	3	3	3	2	KaiC
Sigma54_activ_2	PF14532.1	gi|292656507|ref|YP_003536404.1|	-	1.1e-05	25.4	0.0	0.22	11.5	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|292656507|ref|YP_003536404.1|	-	1.1e-05	25.7	0.0	0.18	12.0	0.0	3.0	3	0	0	3	3	2	2	ABC	transporter
DUF2075	PF09848.4	gi|292656507|ref|YP_003536404.1|	-	6e-05	22.1	0.1	0.3	10.0	0.0	2.4	2	1	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
SKI	PF01202.17	gi|292656507|ref|YP_003536404.1|	-	6.2e-05	22.9	0.0	0.32	10.8	0.0	2.5	2	0	0	2	2	2	2	Shikimate	kinase
NACHT	PF05729.7	gi|292656507|ref|YP_003536404.1|	-	7.3e-05	22.4	0.2	0.27	10.8	0.0	3.6	4	0	0	4	4	4	1	NACHT	domain
AAA_24	PF13479.1	gi|292656507|ref|YP_003536404.1|	-	0.00011	21.8	0.1	0.13	11.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.1	gi|292656507|ref|YP_003536404.1|	-	0.00013	21.6	0.0	0.42	10.1	0.0	2.4	2	1	0	2	2	2	2	AAA	domain
Parvo_NS1	PF01057.12	gi|292656507|ref|YP_003536404.1|	-	0.00024	20.0	0.1	0.19	10.5	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.1	gi|292656507|ref|YP_003536404.1|	-	0.00041	19.9	0.1	1.1	8.8	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.10	gi|292656507|ref|YP_003536404.1|	-	0.00072	19.2	0.3	1.9	8.2	0.0	3.3	2	1	1	3	3	3	1	NTPase
ResIII	PF04851.10	gi|292656507|ref|YP_003536404.1|	-	0.0019	18.0	0.0	2	8.1	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
UPF0079	PF02367.12	gi|292656507|ref|YP_003536404.1|	-	0.0023	17.5	0.0	1.6	8.3	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
IPT	PF01745.11	gi|292656507|ref|YP_003536404.1|	-	0.0027	16.9	0.4	0.97	8.5	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
Bac_DnaA	PF00308.13	gi|292656507|ref|YP_003536404.1|	-	0.0038	16.8	0.0	1.7	8.2	0.0	2.7	2	2	0	2	2	2	1	Bacterial	dnaA	protein
KAP_NTPase	PF07693.9	gi|292656507|ref|YP_003536404.1|	-	0.0056	15.7	0.0	2.4	7.0	0.0	2.6	2	1	0	3	3	3	1	KAP	family	P-loop	domain
ATP-synt_ab	PF00006.20	gi|292656507|ref|YP_003536404.1|	-	0.0069	15.8	0.0	1.7	8.0	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
CPT	PF07931.7	gi|292656507|ref|YP_003536404.1|	-	0.0092	15.6	0.0	1.6	8.3	0.0	2.5	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
Cytidylate_kin2	PF13189.1	gi|292656507|ref|YP_003536404.1|	-	0.0095	15.8	0.0	2.6	7.9	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
T2SE	PF00437.15	gi|292656507|ref|YP_003536404.1|	-	0.016	14.0	0.0	2.3	7.0	0.0	2.4	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Viral_helicase1	PF01443.13	gi|292656507|ref|YP_003536404.1|	-	0.02	14.4	0.0	2.2	7.7	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Torsin	PF06309.6	gi|292656507|ref|YP_003536404.1|	-	0.023	14.5	0.0	3.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.11	gi|292656507|ref|YP_003536404.1|	-	0.027	13.2	0.0	2	7.1	0.0	2.3	2	0	0	2	2	2	0	AFG1-like	ATPase
KTI12	PF08433.5	gi|292656507|ref|YP_003536404.1|	-	0.048	12.8	0.1	11	5.1	0.0	2.9	3	0	0	3	3	3	0	Chromatin	associated	protein	KTI12
Guanylate_kin	PF00625.16	gi|292656507|ref|YP_003536404.1|	-	0.062	12.7	0.2	36	3.7	0.0	3.6	2	1	1	3	3	3	0	Guanylate	kinase
AAA_23	PF13476.1	gi|292656507|ref|YP_003536404.1|	-	0.24	11.6	0.5	24	5.1	0.0	3.0	2	1	1	3	3	3	0	AAA	domain
DUF111	PF01969.12	gi|292656508|ref|YP_003536405.1|	-	1.9e-132	441.6	3.6	3.5e-132	440.8	2.5	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF111
DUF460	PF04312.8	gi|292656509|ref|YP_003536406.1|	-	0.0075	15.7	0.3	0.014	14.9	0.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
Big_3_3	PF13750.1	gi|292656509|ref|YP_003536406.1|	-	0.068	12.6	0.0	0.1	12.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
Rad51	PF08423.6	gi|292656510|ref|YP_003536407.1|	-	1.2e-32	112.8	0.1	1.6e-32	112.4	0.1	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.1	gi|292656510|ref|YP_003536407.1|	-	4.6e-17	62.0	0.6	6.2e-17	61.6	0.4	1.1	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|292656510|ref|YP_003536407.1|	-	1.9e-12	46.9	0.1	2.1e-12	46.7	0.1	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
KaiC	PF06745.8	gi|292656510|ref|YP_003536407.1|	-	1.6e-10	40.4	0.0	6.9e-10	38.4	0.0	1.9	1	1	0	1	1	1	1	KaiC
Zot	PF05707.7	gi|292656510|ref|YP_003536407.1|	-	1.9e-09	37.2	0.0	2.1e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_24	PF13479.1	gi|292656510|ref|YP_003536407.1|	-	0.0019	17.8	0.0	0.0026	17.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292656510|ref|YP_003536407.1|	-	0.0026	17.2	0.2	0.096	12.1	0.0	2.3	1	1	0	2	2	2	1	AAA-like	domain
AAA_19	PF13245.1	gi|292656510|ref|YP_003536407.1|	-	0.004	16.8	0.1	0.011	15.5	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|292656510|ref|YP_003536407.1|	-	0.0041	17.1	0.4	0.0055	16.7	0.3	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|292656510|ref|YP_003536407.1|	-	0.0059	16.0	0.2	0.03	13.7	0.0	1.9	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
CobU	PF02283.11	gi|292656510|ref|YP_003536407.1|	-	0.051	12.9	0.9	0.28	10.5	0.6	1.9	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Arch_ATPase	PF01637.13	gi|292656510|ref|YP_003536407.1|	-	0.12	12.0	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
CBS	PF00571.23	gi|292656511|ref|YP_003536408.1|	-	7.1e-44	147.3	9.9	1.1e-15	57.1	0.2	4.4	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.14	gi|292656511|ref|YP_003536408.1|	-	0.00014	22.2	0.6	0.015	15.6	0.0	2.7	2	1	0	2	2	2	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
PcrB	PF01884.12	gi|292656511|ref|YP_003536408.1|	-	0.027	13.7	0.2	6.9	5.8	0.0	2.4	2	0	0	2	2	2	0	PcrB	family
AroM	PF07302.6	gi|292656511|ref|YP_003536408.1|	-	0.062	12.6	0.0	0.16	11.2	0.0	1.6	1	0	0	1	1	1	0	AroM	protein
T2SE	PF00437.15	gi|292656512|ref|YP_003536409.1|	-	1.5e-42	145.3	0.0	2.9e-42	144.4	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|292656512|ref|YP_003536409.1|	-	0.00012	21.5	0.1	0.00023	20.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
T2SF	PF00482.18	gi|292656513|ref|YP_003536410.1|	-	6.3e-32	110.1	16.3	1.1e-16	60.8	0.1	3.3	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
IncA	PF04156.9	gi|292656513|ref|YP_003536410.1|	-	0.12	11.9	0.2	0.12	11.9	0.1	3.3	3	1	0	3	3	3	0	IncA	protein
DUF824	PF05688.6	gi|292656514|ref|YP_003536411.1|	-	0.00067	19.2	1.8	0.0053	16.3	0.3	2.9	2	0	0	2	2	2	1	Salmonella	repeat	of	unknown	function	(DUF824)
Big_1	PF02369.11	gi|292656515|ref|YP_003536412.1|	-	0.00012	21.9	2.0	0.00055	19.7	1.2	2.3	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
DUF2771	PF10969.3	gi|292656515|ref|YP_003536412.1|	-	0.039	13.2	1.7	0.18	11.0	0.0	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2771)
HAD_2	PF13419.1	gi|292656516|ref|YP_003536413.1|	-	9.4e-30	104.1	1.2	1.1e-29	103.8	0.8	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292656516|ref|YP_003536413.1|	-	6.8e-05	23.3	0.4	0.00011	22.7	0.2	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292656516|ref|YP_003536413.1|	-	0.0069	16.5	0.0	0.0083	16.3	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|292656516|ref|YP_003536413.1|	-	0.027	13.6	0.2	0.049	12.7	0.0	1.4	2	0	0	2	2	2	0	Putative	Phosphatase
Hydrolase_like	PF13242.1	gi|292656516|ref|YP_003536413.1|	-	0.035	13.8	0.1	0.19	11.4	0.1	2.2	2	1	0	2	2	2	0	HAD-hyrolase-like
Hydrolase_6	PF13344.1	gi|292656516|ref|YP_003536413.1|	-	0.054	13.3	0.0	0.13	12.1	0.0	1.6	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Pox_I5	PF04713.7	gi|292656517|ref|YP_003536414.1|	-	0.073	12.7	0.4	0.48	10.1	0.0	2.1	2	0	0	2	2	2	0	Poxvirus	protein	I5
DUF4006	PF13179.1	gi|292656518|ref|YP_003536415.1|	-	0.39	10.2	4.0	0.74	9.4	2.8	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF4006)
Cob_adeno_trans	PF01923.13	gi|292656521|ref|YP_003536418.1|	-	3.2e-59	199.3	0.0	3.6e-59	199.1	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
AAA_27	PF13514.1	gi|292656521|ref|YP_003536418.1|	-	0.069	10.8	0.1	0.08	10.6	0.0	1.0	1	0	0	1	1	1	0	AAA	domain
GST_N_3	PF13417.1	gi|292656522|ref|YP_003536419.1|	-	5.4e-16	58.5	0.0	5.8e-16	58.4	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.19	gi|292656522|ref|YP_003536419.1|	-	4.3e-14	52.2	0.0	5.3e-14	51.9	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.1	gi|292656522|ref|YP_003536419.1|	-	9.9e-13	47.8	0.0	1.1e-12	47.7	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.15	gi|292656522|ref|YP_003536419.1|	-	1.3e-06	28.4	0.0	1.6e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|292656522|ref|YP_003536419.1|	-	0.0052	17.0	0.0	0.0058	16.8	0.0	1.2	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.1	gi|292656522|ref|YP_003536419.1|	-	0.084	13.0	0.1	0.15	12.2	0.1	1.6	1	1	0	1	1	1	0	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|292656522|ref|YP_003536419.1|	-	0.1	12.4	0.0	0.12	12.2	0.0	1.3	1	1	0	1	1	1	0	Thioredoxin	domain
TroA	PF01297.12	gi|292656523|ref|YP_003536420.1|	-	1.2e-44	152.5	0.1	1.5e-44	152.2	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
ABC_tran	PF00005.22	gi|292656524|ref|YP_003536421.1|	-	1.3e-32	112.9	0.0	1.8e-32	112.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656524|ref|YP_003536421.1|	-	2.3e-12	47.4	0.0	2.6e-06	27.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|292656524|ref|YP_003536421.1|	-	3.7e-06	26.3	0.0	1e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|292656524|ref|YP_003536421.1|	-	2.5e-05	23.6	0.1	0.00011	21.5	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|292656524|ref|YP_003536421.1|	-	5.1e-05	23.3	0.1	0.00018	21.5	0.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|292656524|ref|YP_003536421.1|	-	0.0002	21.7	0.0	0.00029	21.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292656524|ref|YP_003536421.1|	-	0.00037	20.0	0.5	0.0007	19.1	0.3	1.8	1	1	0	1	1	1	1	AAA-like	domain
AAA_19	PF13245.1	gi|292656524|ref|YP_003536421.1|	-	0.00053	19.6	0.0	0.0018	17.9	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|292656524|ref|YP_003536421.1|	-	0.001	19.9	0.1	0.011	16.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|292656524|ref|YP_003536421.1|	-	0.001	18.9	0.5	0.028	14.3	0.3	2.6	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
ABC_ATPase	PF09818.4	gi|292656524|ref|YP_003536421.1|	-	0.0013	17.3	0.1	1.3	7.5	0.0	3.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.1	gi|292656524|ref|YP_003536421.1|	-	0.0025	17.9	0.2	0.028	14.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292656524|ref|YP_003536421.1|	-	0.0043	16.4	0.1	0.04	13.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|292656524|ref|YP_003536421.1|	-	0.0066	16.1	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|292656524|ref|YP_003536421.1|	-	0.0084	15.7	0.1	0.037	13.5	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|292656524|ref|YP_003536421.1|	-	0.015	14.9	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.1	gi|292656524|ref|YP_003536421.1|	-	0.02	14.7	0.1	0.042	13.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|292656524|ref|YP_003536421.1|	-	0.021	14.5	0.0	0.051	13.2	0.0	1.7	2	0	0	2	2	2	0	NTPase
DUF87	PF01935.12	gi|292656524|ref|YP_003536421.1|	-	0.029	14.1	0.0	0.061	13.1	0.0	1.5	2	0	0	2	2	1	0	Domain	of	unknown	function	DUF87
MMR_HSR1	PF01926.18	gi|292656524|ref|YP_003536421.1|	-	0.032	14.1	0.0	0.069	13.1	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Arch_ATPase	PF01637.13	gi|292656524|ref|YP_003536421.1|	-	0.073	12.7	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
Spore_IV_A	PF09547.5	gi|292656524|ref|YP_003536421.1|	-	0.078	11.6	0.0	0.12	11.0	0.0	1.1	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
DUF258	PF03193.11	gi|292656524|ref|YP_003536421.1|	-	0.08	12.1	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MutS_V	PF00488.16	gi|292656524|ref|YP_003536421.1|	-	0.083	12.2	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	MutS	domain	V
AAA_14	PF13173.1	gi|292656524|ref|YP_003536421.1|	-	0.089	12.6	0.0	0.33	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|292656524|ref|YP_003536421.1|	-	0.095	12.1	0.2	12	5.2	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF3584	PF12128.3	gi|292656524|ref|YP_003536421.1|	-	0.1	9.9	0.0	0.15	9.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
NB-ARC	PF00931.17	gi|292656524|ref|YP_003536421.1|	-	0.11	11.2	0.0	0.19	10.5	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|292656524|ref|YP_003536421.1|	-	0.12	12.6	0.0	0.26	11.5	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
ABC-3	PF00950.12	gi|292656525|ref|YP_003536422.1|	-	9e-60	202.1	40.9	1.1e-59	201.8	28.3	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|292656525|ref|YP_003536422.1|	-	1.7e-05	23.7	36.8	1.7e-05	23.7	25.5	1.6	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.1	gi|292656525|ref|YP_003536422.1|	-	0.11	12.3	1.4	0.28	11.0	0.9	1.6	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656526|ref|YP_003536423.1|	-	9.8e-05	22.0	0.5	0.00013	21.6	0.4	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|292656526|ref|YP_003536423.1|	-	0.0064	16.7	0.4	0.0074	16.5	0.3	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-H2C2_2	PF13465.1	gi|292656526|ref|YP_003536423.1|	-	0.015	15.5	2.1	0.38	11.1	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
TerY-C	PF15616.1	gi|292656526|ref|YP_003536423.1|	-	0.022	14.6	0.1	0.022	14.6	0.0	1.1	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn-ribbon_8	PF09723.5	gi|292656526|ref|YP_003536423.1|	-	0.029	14.3	0.8	0.4	10.6	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292656526|ref|YP_003536423.1|	-	0.031	13.7	0.1	0.72	9.4	0.0	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.2	gi|292656526|ref|YP_003536423.1|	-	0.04	13.7	0.3	0.053	13.3	0.2	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ISL3	PF14690.1	gi|292656526|ref|YP_003536423.1|	-	0.052	13.5	2.5	1.4	8.9	0.0	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ribbon_3	PF13248.1	gi|292656526|ref|YP_003536423.1|	-	0.06	12.5	0.7	0.32	10.2	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF983	PF06170.7	gi|292656526|ref|YP_003536423.1|	-	0.081	13.0	0.4	3.9	7.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
TFIIS_C	PF01096.13	gi|292656526|ref|YP_003536423.1|	-	0.11	12.1	2.1	1.1	8.9	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin	PF00301.15	gi|292656526|ref|YP_003536423.1|	-	0.12	12.3	2.3	3.6	7.5	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin
DUF2072	PF09845.4	gi|292656526|ref|YP_003536423.1|	-	0.16	11.9	0.5	0.23	11.3	0.3	1.5	1	1	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
DUF3279	PF11682.3	gi|292656526|ref|YP_003536423.1|	-	0.16	11.5	2.2	0.76	9.3	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3279)
DUF3797	PF12677.2	gi|292656526|ref|YP_003536423.1|	-	0.58	9.8	2.4	0.69	9.5	0.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
RNA_POL_M_15KD	PF02150.11	gi|292656526|ref|YP_003536423.1|	-	0.76	9.5	3.4	6.8	6.4	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-RanBP	PF00641.13	gi|292656526|ref|YP_003536423.1|	-	1.6	7.9	6.1	5.8	6.1	1.2	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Aminotran_5	PF00266.14	gi|292656527|ref|YP_003536424.1|	-	5.6e-10	38.5	0.0	9.4e-10	37.7	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
GDC-P	PF02347.11	gi|292656527|ref|YP_003536424.1|	-	1.4e-08	33.8	0.0	1.3e-06	27.3	0.0	2.1	2	0	0	2	2	2	2	Glycine	cleavage	system	P-protein
Beta_elim_lyase	PF01212.16	gi|292656527|ref|YP_003536424.1|	-	0.0043	16.2	0.0	0.0069	15.5	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|292656527|ref|YP_003536424.1|	-	0.028	13.3	0.0	0.04	12.8	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|292656527|ref|YP_003536424.1|	-	0.12	11.3	0.0	0.22	10.5	0.0	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GDC-P	PF02347.11	gi|292656528|ref|YP_003536425.1|	-	3.8e-110	368.5	0.0	4.3e-110	368.3	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Cys_Met_Meta_PP	PF01053.15	gi|292656528|ref|YP_003536425.1|	-	1.5e-05	23.5	0.0	1.9e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|292656528|ref|YP_003536425.1|	-	0.0099	14.6	0.0	0.016	13.9	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Macscav_rec	PF03523.8	gi|292656528|ref|YP_003536425.1|	-	0.016	14.9	0.0	0.085	12.6	0.0	2.3	2	0	0	2	2	2	0	Macrophage	scavenger	receptor
GCV_H	PF01597.14	gi|292656529|ref|YP_003536426.1|	-	2.6e-43	146.5	0.0	2.9e-43	146.4	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.17	gi|292656529|ref|YP_003536426.1|	-	0.00018	21.0	0.1	0.0039	16.7	0.0	2.1	2	0	0	2	2	2	1	Biotin-requiring	enzyme
RnfC_N	PF13375.1	gi|292656529|ref|YP_003536426.1|	-	0.012	15.3	0.0	0.023	14.4	0.0	1.4	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
GCV_T	PF01571.16	gi|292656530|ref|YP_003536427.1|	-	1.3e-67	227.2	0.1	1.7e-67	226.8	0.1	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|292656530|ref|YP_003536427.1|	-	1.1e-25	89.4	0.1	2e-25	88.6	0.1	1.4	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
TrmE_N	PF10396.4	gi|292656530|ref|YP_003536427.1|	-	0.00064	19.6	0.0	0.073	13.0	0.0	2.3	2	0	0	2	2	2	1	GTP-binding	protein	TrmE	N-terminus
SoxG	PF04268.7	gi|292656530|ref|YP_003536427.1|	-	0.00087	19.1	0.1	0.15	11.8	0.0	2.3	2	0	0	2	2	2	2	Sarcosine	oxidase,	gamma	subunit	family
ABC_tran	PF00005.22	gi|292656531|ref|YP_003536428.1|	-	2.2e-28	99.2	0.0	3.1e-28	98.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656531|ref|YP_003536428.1|	-	2e-06	27.9	0.0	0.044	13.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292656531|ref|YP_003536428.1|	-	6e-05	22.3	0.0	0.14	11.3	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|292656531|ref|YP_003536428.1|	-	0.00019	20.8	0.0	0.00062	19.2	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|292656531|ref|YP_003536428.1|	-	0.0006	19.6	0.1	0.0041	17.0	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
FtsK_SpoIIIE	PF01580.13	gi|292656531|ref|YP_003536428.1|	-	0.0095	15.4	0.1	0.022	14.2	0.0	1.6	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_25	PF13481.1	gi|292656531|ref|YP_003536428.1|	-	0.016	14.5	0.1	0.031	13.6	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|292656531|ref|YP_003536428.1|	-	0.035	14.9	0.1	0.46	11.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|292656531|ref|YP_003536428.1|	-	0.054	13.4	0.8	0.36	10.8	0.5	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_28	PF13521.1	gi|292656531|ref|YP_003536428.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|292656531|ref|YP_003536428.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
CbiQ	PF02361.11	gi|292656532|ref|YP_003536429.1|	-	8.3e-31	107.2	6.4	1.1e-30	106.9	4.4	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
NAD_binding_1	PF00175.16	gi|292656532|ref|YP_003536429.1|	-	0.075	13.6	0.0	0.12	12.9	0.0	1.2	1	0	0	1	1	1	0	Oxidoreductase	NAD-binding	domain
PDGLE	PF13190.1	gi|292656533|ref|YP_003536430.1|	-	1.5e-13	50.2	3.1	2e-13	49.8	2.2	1.1	1	0	0	1	1	1	1	PDGLE	domain
CytB6-F_Fe-S	PF08802.5	gi|292656533|ref|YP_003536430.1|	-	0.26	11.3	0.3	0.26	11.3	0.2	2.1	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
CbiM	PF01891.11	gi|292656534|ref|YP_003536431.1|	-	9.7e-64	214.7	21.1	1.1e-63	214.5	14.6	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF3816	PF12822.2	gi|292656534|ref|YP_003536431.1|	-	5.4	6.8	24.2	70	3.2	16.8	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
NikR_C	PF08753.6	gi|292656535|ref|YP_003536432.1|	-	3.1e-24	84.6	3.1	4.2e-24	84.2	2.1	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|292656535|ref|YP_003536432.1|	-	1.4e-05	24.7	0.0	2.7e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|292656535|ref|YP_003536432.1|	-	0.0035	17.4	0.0	0.0069	16.5	0.0	1.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
ACT_6	PF13740.1	gi|292656535|ref|YP_003536432.1|	-	0.01	15.5	0.1	0.02	14.5	0.1	1.6	1	0	0	1	1	1	0	ACT	domain
L27	PF02828.11	gi|292656535|ref|YP_003536432.1|	-	0.11	12.2	0.2	20	4.9	0.0	2.8	3	0	0	3	3	3	0	L27	domain
DUF2309	PF10070.4	gi|292656536|ref|YP_003536433.1|	-	1.5e-250	833.6	0.0	2.1e-250	833.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Oxidored_q1	PF00361.15	gi|292656537|ref|YP_003536434.1|	-	3.2e-37	128.2	8.1	3.2e-37	128.2	5.6	1.7	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|292656537|ref|YP_003536434.1|	-	2e-06	27.2	0.1	4.9e-06	26.0	0.1	1.6	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
HTH_24	PF13412.1	gi|292656538|ref|YP_003536435.1|	-	1.5e-15	56.2	0.1	2.3e-15	55.6	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292656538|ref|YP_003536435.1|	-	8.2e-13	47.6	1.2	1.4e-12	46.9	0.9	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656538|ref|YP_003536435.1|	-	1.8e-07	30.7	0.0	3.6e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|292656538|ref|YP_003536435.1|	-	5.7e-07	29.0	0.0	1.1e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292656538|ref|YP_003536435.1|	-	7.8e-07	28.5	0.0	1.5e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292656538|ref|YP_003536435.1|	-	1.4e-05	24.9	0.0	2.8e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.2	gi|292656538|ref|YP_003536435.1|	-	1.5e-05	24.7	0.0	3.1e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656538|ref|YP_003536435.1|	-	3.7e-05	23.2	0.0	6.5e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|292656538|ref|YP_003536435.1|	-	5.1e-05	23.3	0.0	0.00015	21.7	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|292656538|ref|YP_003536435.1|	-	8.7e-05	21.9	0.1	0.00017	20.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.1	gi|292656538|ref|YP_003536435.1|	-	0.00021	21.5	0.1	0.00081	19.6	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|292656538|ref|YP_003536435.1|	-	0.00056	19.4	0.0	0.0013	18.3	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|292656538|ref|YP_003536435.1|	-	0.0014	18.5	0.1	0.003	17.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292656538|ref|YP_003536435.1|	-	0.0016	17.9	0.1	0.022	14.2	0.0	2.3	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|292656538|ref|YP_003536435.1|	-	0.0041	16.2	0.2	0.024	13.7	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
GntR	PF00392.16	gi|292656538|ref|YP_003536435.1|	-	0.0043	16.4	0.0	0.0097	15.3	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|292656538|ref|YP_003536435.1|	-	0.005	16.5	0.0	0.0094	15.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|292656538|ref|YP_003536435.1|	-	0.0082	15.8	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.1	gi|292656538|ref|YP_003536435.1|	-	0.01	15.3	0.2	0.033	13.7	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|292656538|ref|YP_003536435.1|	-	0.017	14.8	0.0	0.029	14.1	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_10	PF04967.7	gi|292656538|ref|YP_003536435.1|	-	0.021	14.3	0.1	0.046	13.3	0.1	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_36	PF13730.1	gi|292656538|ref|YP_003536435.1|	-	0.022	14.8	0.0	0.038	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|292656538|ref|YP_003536435.1|	-	0.033	13.6	0.0	0.055	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_29	PF13551.1	gi|292656538|ref|YP_003536435.1|	-	0.034	14.3	0.0	0.068	13.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_12	PF08461.5	gi|292656538|ref|YP_003536435.1|	-	0.037	13.7	0.1	0.15	11.7	0.0	2.1	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_1	PF00126.22	gi|292656538|ref|YP_003536435.1|	-	0.053	13.2	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_30	PF13556.1	gi|292656538|ref|YP_003536435.1|	-	0.077	12.6	0.0	0.3	10.7	0.0	1.9	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
GTP_EFTU	PF00009.22	gi|292656539|ref|YP_003536436.1|	-	7.2e-58	195.1	0.0	8.6e-58	194.8	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|292656539|ref|YP_003536436.1|	-	5.7e-30	103.4	0.0	1.4e-29	102.1	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|292656539|ref|YP_003536436.1|	-	1.8e-19	69.5	2.0	1.5e-18	66.6	0.9	2.4	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|292656539|ref|YP_003536436.1|	-	8.4e-09	35.4	0.0	2e-08	34.1	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|292656539|ref|YP_003536436.1|	-	2.5e-05	24.7	0.1	0.0011	19.4	0.0	3.0	2	1	0	2	2	2	1	Miro-like	protein
GTP_EFTU_D4	PF14578.1	gi|292656539|ref|YP_003536436.1|	-	3.5e-05	23.3	0.1	0.00011	21.7	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
Ras	PF00071.17	gi|292656539|ref|YP_003536436.1|	-	0.00033	20.0	0.7	0.0017	17.7	0.2	2.1	2	1	0	2	2	2	1	Ras	family
Dynamin_N	PF00350.18	gi|292656539|ref|YP_003536436.1|	-	0.0013	18.6	0.2	0.73	9.6	0.0	2.6	1	1	1	2	2	2	2	Dynamin	family
Gtr1_RagA	PF04670.7	gi|292656539|ref|YP_003536436.1|	-	0.0021	17.2	0.0	0.35	9.9	0.0	2.2	2	0	0	2	2	2	2	Gtr1/RagA	G	protein	conserved	region
Septin	PF00735.13	gi|292656539|ref|YP_003536436.1|	-	0.01	14.8	0.2	0.021	13.8	0.0	1.5	2	0	0	2	2	2	0	Septin
FeoB_N	PF02421.13	gi|292656539|ref|YP_003536436.1|	-	0.011	15.0	0.5	0.28	10.4	0.2	2.8	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
SRPRB	PF09439.5	gi|292656539|ref|YP_003536436.1|	-	0.012	14.7	0.1	0.51	9.5	0.0	2.3	1	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Hemolysin_N	PF12563.3	gi|292656539|ref|YP_003536436.1|	-	0.038	13.4	0.1	0.061	12.7	0.0	1.2	1	0	0	1	1	1	0	Hemolytic	toxin	N	terminal
ORF6C	PF10552.4	gi|292656540|ref|YP_003536437.1|	-	0.061	13.0	0.0	0.08	12.6	0.0	1.1	1	0	0	1	1	1	0	ORF6C	domain
PDZ_2	PF13180.1	gi|292656540|ref|YP_003536437.1|	-	0.072	12.9	0.0	0.13	12.1	0.0	1.6	1	1	0	1	1	1	0	PDZ	domain
NYN	PF01936.13	gi|292656541|ref|YP_003536438.1|	-	4.2e-19	69.2	0.1	5e-19	69.0	0.1	1.0	1	0	0	1	1	1	1	NYN	domain
Peripla_BP_4	PF13407.1	gi|292656541|ref|YP_003536438.1|	-	0.00031	20.2	0.2	0.00036	19.9	0.2	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
AP_endonuc_2	PF01261.19	gi|292656541|ref|YP_003536438.1|	-	0.027	13.7	0.2	0.051	12.8	0.2	1.5	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
TPK_catalytic	PF04263.11	gi|292656541|ref|YP_003536438.1|	-	0.041	13.4	0.1	0.052	13.1	0.1	1.2	1	0	0	1	1	1	0	Thiamin	pyrophosphokinase,	catalytic	domain
Hydrolase_like	PF13242.1	gi|292656541|ref|YP_003536438.1|	-	0.042	13.5	0.5	0.14	11.8	0.1	1.9	1	1	1	2	2	2	0	HAD-hyrolase-like
CoA_binding_2	PF13380.1	gi|292656541|ref|YP_003536438.1|	-	0.074	13.2	0.2	4.9	7.3	0.0	2.1	1	1	1	2	2	2	0	CoA	binding	domain
TatD_DNase	PF01026.16	gi|292656542|ref|YP_003536439.1|	-	7.4e-22	77.7	0.0	2.6e-20	72.6	0.0	2.0	1	1	0	1	1	1	1	TatD	related	DNase
DUF2150	PF09920.4	gi|292656543|ref|YP_003536440.1|	-	6.6e-60	201.9	7.1	7.6e-60	201.7	5.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
Big_1	PF02369.11	gi|292656544|ref|YP_003536441.1|	-	1.2e-11	44.3	0.8	1.2e-11	44.3	0.6	4.8	4	2	0	4	4	4	1	Bacterial	Ig-like	domain	(group	1)
PKD	PF00801.15	gi|292656544|ref|YP_003536441.1|	-	6.9e-06	25.7	2.3	6.9e-06	25.7	1.6	4.3	5	1	0	5	5	5	1	PKD	domain
DUF4236	PF14020.1	gi|292656544|ref|YP_003536441.1|	-	0.0068	16.4	0.8	0.039	14.0	0.5	2.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4236)
PilZ	PF07238.9	gi|292656544|ref|YP_003536441.1|	-	0.031	14.2	0.1	0.21	11.6	0.0	2.5	2	0	0	2	2	2	0	PilZ	domain
DUF1628	PF07790.6	gi|292656544|ref|YP_003536441.1|	-	0.096	13.4	1.6	2	9.2	0.0	3.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1628)
DUF824	PF05688.6	gi|292656544|ref|YP_003536441.1|	-	1.1	8.9	7.0	2.4	7.8	0.0	3.5	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
HMG_CoA_synt_N	PF01154.12	gi|292656545|ref|YP_003536442.1|	-	4.2e-26	91.5	0.0	6e-26	91.0	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.5	gi|292656545|ref|YP_003536442.1|	-	9e-21	74.5	0.0	1.9e-20	73.4	0.0	1.4	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
FMN_red	PF03358.10	gi|292656545|ref|YP_003536442.1|	-	0.074	12.5	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	NADPH-dependent	FMN	reductase
Glucosaminidase	PF01832.15	gi|292656545|ref|YP_003536442.1|	-	0.076	13.1	0.0	0.32	11.0	0.0	2.0	2	0	0	2	2	2	0	Mannosyl-glycoprotein	endo-beta-N-acetylglucosaminidase
AIF-MLS	PF14962.1	gi|292656546|ref|YP_003536443.1|	-	0.11	12.0	0.3	0.12	11.9	0.2	1.0	1	0	0	1	1	1	0	Mitochondria	Localisation	Sequence
HTH_31	PF13560.1	gi|292656547|ref|YP_003536444.1|	-	2.1e-09	37.4	0.1	8.6e-09	35.4	0.0	2.0	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|292656547|ref|YP_003536444.1|	-	1.8e-08	34.0	0.0	4.4e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|292656547|ref|YP_003536444.1|	-	3.1e-08	33.5	0.0	6.6e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|292656547|ref|YP_003536444.1|	-	0.027	14.6	0.0	0.094	12.9	0.0	1.9	2	0	0	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_37	PF13744.1	gi|292656547|ref|YP_003536444.1|	-	0.028	14.2	0.0	0.062	13.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656547|ref|YP_003536444.1|	-	0.051	13.2	0.1	0.47	10.1	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
DUF457	PF04307.9	gi|292656548|ref|YP_003536445.1|	-	6.3e-12	45.0	3.1	7.1e-12	44.9	2.2	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Acetyltransf_1	PF00583.19	gi|292656549|ref|YP_003536446.1|	-	3.1e-13	49.5	0.0	6.7e-13	48.4	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656549|ref|YP_003536446.1|	-	1.9e-09	37.6	0.0	2.9e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656549|ref|YP_003536446.1|	-	6.7e-08	32.7	0.0	1.3e-07	31.8	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292656549|ref|YP_003536446.1|	-	1.1e-07	31.8	0.0	1.7e-07	31.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656549|ref|YP_003536446.1|	-	2.3e-07	30.8	0.0	3.6e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656549|ref|YP_003536446.1|	-	0.00017	21.3	0.0	0.0003	20.6	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|292656549|ref|YP_003536446.1|	-	0.0012	18.7	0.0	0.0021	17.9	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656549|ref|YP_003536446.1|	-	0.022	14.4	0.0	0.037	13.7	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|292656549|ref|YP_003536446.1|	-	0.023	14.6	0.0	0.034	14.0	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
ExoD	PF06055.7	gi|292656550|ref|YP_003536447.1|	-	0.13	11.3	5.3	0.26	10.3	3.6	1.5	1	0	0	1	1	1	0	Exopolysaccharide	synthesis,	ExoD
RseC_MucC	PF04246.7	gi|292656550|ref|YP_003536447.1|	-	2	8.0	7.4	1.6	8.3	2.7	2.2	2	1	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
Acetyltransf_3	PF13302.1	gi|292656551|ref|YP_003536448.1|	-	5.4e-22	78.4	0.1	8.9e-22	77.7	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292656551|ref|YP_003536448.1|	-	0.039	13.9	0.0	0.065	13.2	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
AAA	PF00004.24	gi|292656553|ref|YP_003536450.1|	-	8e-11	42.2	0.0	2.9e-10	40.4	0.0	2.0	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|292656553|ref|YP_003536450.1|	-	1.5e-06	27.2	0.0	0.01	14.5	0.0	2.3	1	1	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|292656553|ref|YP_003536450.1|	-	8.4e-06	25.0	0.0	1.5e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|292656553|ref|YP_003536450.1|	-	4.1e-05	23.7	0.0	0.00049	20.2	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292656553|ref|YP_003536450.1|	-	9.6e-05	22.4	0.3	0.029	14.3	0.0	3.1	1	1	2	3	3	3	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|292656553|ref|YP_003536450.1|	-	0.00041	20.6	0.2	0.67	10.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|292656553|ref|YP_003536450.1|	-	0.00061	18.9	0.0	0.0012	17.9	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.1	gi|292656553|ref|YP_003536450.1|	-	0.0007	20.4	4.7	0.0016	19.2	0.0	2.9	2	1	1	3	3	3	1	AAA	domain
IstB_IS21	PF01695.12	gi|292656553|ref|YP_003536450.1|	-	0.0018	17.7	0.0	0.0033	16.8	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|292656553|ref|YP_003536450.1|	-	0.002	18.0	0.2	0.0071	16.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|292656553|ref|YP_003536450.1|	-	0.0045	16.9	0.0	0.012	15.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|292656553|ref|YP_003536450.1|	-	0.012	15.2	3.3	0.019	14.5	1.7	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|292656553|ref|YP_003536450.1|	-	0.017	14.9	0.0	0.034	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.13	gi|292656553|ref|YP_003536450.1|	-	0.019	14.6	0.0	0.09	12.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_19	PF13245.1	gi|292656553|ref|YP_003536450.1|	-	0.031	14.0	0.1	0.12	12.1	0.1	2.1	1	0	0	1	1	1	0	Part	of	AAA	domain
RNA_helicase	PF00910.17	gi|292656553|ref|YP_003536450.1|	-	0.049	13.8	0.0	0.095	12.8	0.0	1.6	1	1	0	1	1	1	0	RNA	helicase
TIP49	PF06068.8	gi|292656553|ref|YP_003536450.1|	-	0.05	12.3	0.0	2.1	6.9	0.0	2.2	2	0	0	2	2	2	0	TIP49	C-terminus
AAA_25	PF13481.1	gi|292656553|ref|YP_003536450.1|	-	0.052	12.9	0.6	0.81	9.0	0.1	2.7	1	1	1	2	2	2	0	AAA	domain
PhoH	PF02562.11	gi|292656553|ref|YP_003536450.1|	-	0.082	12.1	0.0	6.3	5.9	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
NACHT	PF05729.7	gi|292656553|ref|YP_003536450.1|	-	0.084	12.5	0.0	0.3	10.7	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
AAA_5	PF07728.9	gi|292656553|ref|YP_003536450.1|	-	0.1	12.3	0.0	0.28	10.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ADH_N	PF08240.7	gi|292656554|ref|YP_003536451.1|	-	9.5e-27	92.9	1.0	2.2e-26	91.7	0.7	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|292656554|ref|YP_003536451.1|	-	4e-26	91.0	0.3	6.1e-26	90.4	0.2	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292656554|ref|YP_003536451.1|	-	0.00014	21.4	0.6	0.00027	20.5	0.4	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N_2	PF13602.1	gi|292656554|ref|YP_003536451.1|	-	0.00065	20.6	0.1	0.0015	19.3	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|292656554|ref|YP_003536451.1|	-	0.016	14.3	0.1	0.028	13.5	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|292656554|ref|YP_003536451.1|	-	0.028	14.0	0.1	0.041	13.4	0.1	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Methyltransf_18	PF12847.2	gi|292656554|ref|YP_003536451.1|	-	0.056	14.0	0.2	0.15	12.6	0.2	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
XdhC_C	PF13478.1	gi|292656554|ref|YP_003536451.1|	-	0.095	13.0	0.2	0.22	11.8	0.1	1.6	1	1	1	2	2	2	0	XdhC	Rossmann	domain
TrkA_N	PF02254.13	gi|292656554|ref|YP_003536451.1|	-	0.1	12.6	0.3	0.18	11.7	0.2	1.4	1	0	0	1	1	1	0	TrkA-N	domain
3HCDH_N	PF02737.13	gi|292656554|ref|YP_003536451.1|	-	0.14	11.7	1.2	0.22	11.1	0.8	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lar_restr_allev	PF14354.1	gi|292656555|ref|YP_003536452.1|	-	0.0023	18.1	0.3	0.0031	17.7	0.2	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|292656555|ref|YP_003536452.1|	-	0.0072	16.1	0.3	0.013	15.3	0.2	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292656555|ref|YP_003536452.1|	-	0.011	14.9	0.2	1.5	8.1	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
GFA	PF04828.9	gi|292656555|ref|YP_003536452.1|	-	0.014	15.3	0.2	2.2	8.3	0.0	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
UPF0547	PF10571.4	gi|292656555|ref|YP_003536452.1|	-	0.021	14.5	1.1	0.14	11.8	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
A2L_zn_ribbon	PF08792.5	gi|292656555|ref|YP_003536452.1|	-	0.027	13.9	0.4	5.9	6.4	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Ribosomal_S14	PF00253.16	gi|292656555|ref|YP_003536452.1|	-	0.08	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
zinc_ribbon_2	PF13240.1	gi|292656555|ref|YP_003536452.1|	-	0.082	12.4	0.5	9.5	5.8	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-Mss51	PF13824.1	gi|292656555|ref|YP_003536452.1|	-	0.088	12.6	0.4	0.18	11.6	0.3	1.7	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HypA	PF01155.14	gi|292656555|ref|YP_003536452.1|	-	0.11	12.2	0.1	0.13	11.9	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Nudix_N_2	PF14803.1	gi|292656555|ref|YP_003536452.1|	-	0.11	12.2	5.0	0.38	10.4	3.0	2.1	1	1	1	2	2	2	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.5	gi|292656555|ref|YP_003536452.1|	-	0.15	12.0	0.4	5.1	7.1	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|292656555|ref|YP_003536452.1|	-	0.16	11.6	1.4	9.7	5.9	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn_ribbon_recom	PF13408.1	gi|292656555|ref|YP_003536452.1|	-	0.17	12.1	0.3	0.82	9.9	0.4	1.7	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
ABC_tran	PF00005.22	gi|292656556|ref|YP_003536453.1|	-	3.2e-36	124.6	0.0	4e-36	124.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656556|ref|YP_003536453.1|	-	2.8e-12	47.2	0.0	3.5e-06	27.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292656556|ref|YP_003536453.1|	-	3.7e-09	36.1	0.1	1e-07	31.4	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|292656556|ref|YP_003536453.1|	-	1.6e-06	28.2	0.3	3.2e-06	27.2	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656556|ref|YP_003536453.1|	-	2.8e-05	24.2	0.1	0.00013	22.1	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|292656556|ref|YP_003536453.1|	-	8.3e-05	22.0	0.0	0.00017	21.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|292656556|ref|YP_003536453.1|	-	0.00015	21.3	0.0	0.0048	16.3	0.0	2.2	2	1	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|292656556|ref|YP_003536453.1|	-	0.00064	18.9	0.0	0.001	18.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|292656556|ref|YP_003536453.1|	-	0.00077	19.2	0.0	0.023	14.4	0.0	2.2	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|292656556|ref|YP_003536453.1|	-	0.00092	18.9	0.0	0.0042	16.7	0.0	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
ABC_ATPase	PF09818.4	gi|292656556|ref|YP_003536453.1|	-	0.00097	17.8	0.1	1.3	7.4	0.2	2.8	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.1	gi|292656556|ref|YP_003536453.1|	-	0.0011	18.6	0.0	0.0023	17.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|292656556|ref|YP_003536453.1|	-	0.0027	17.1	1.2	0.031	13.6	0.8	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|292656556|ref|YP_003536453.1|	-	0.0039	17.5	0.0	0.007	16.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292656556|ref|YP_003536453.1|	-	0.011	15.5	0.1	0.024	14.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|292656556|ref|YP_003536453.1|	-	0.015	16.0	0.7	0.028	15.2	0.5	1.7	1	1	0	1	1	1	0	AAA	domain
DUF3987	PF13148.1	gi|292656556|ref|YP_003536453.1|	-	0.016	13.8	0.0	0.023	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_5	PF07728.9	gi|292656556|ref|YP_003536453.1|	-	0.019	14.7	0.1	3.2	7.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|292656556|ref|YP_003536453.1|	-	0.024	14.8	0.1	0.48	10.6	0.1	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRC	PF05239.11	gi|292656556|ref|YP_003536453.1|	-	0.028	14.2	0.4	0.33	10.8	0.1	2.2	2	0	0	2	2	2	0	PRC-barrel	domain
MutS_V	PF00488.16	gi|292656556|ref|YP_003536453.1|	-	0.034	13.5	0.0	0.055	12.8	0.0	1.4	1	0	0	1	1	1	0	MutS	domain	V
SbcCD_C	PF13558.1	gi|292656556|ref|YP_003536453.1|	-	0.039	13.8	0.3	0.45	10.4	0.2	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_14	PF13173.1	gi|292656556|ref|YP_003536453.1|	-	0.046	13.6	0.0	0.36	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|292656556|ref|YP_003536453.1|	-	0.049	13.5	0.0	0.12	12.3	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|292656556|ref|YP_003536453.1|	-	0.065	12.9	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|292656556|ref|YP_003536453.1|	-	0.072	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.17	gi|292656556|ref|YP_003536453.1|	-	0.082	11.7	0.0	0.4	9.4	0.0	1.9	2	1	0	2	2	2	0	NB-ARC	domain
T2SE	PF00437.15	gi|292656556|ref|YP_003536453.1|	-	0.088	11.6	0.0	0.18	10.7	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_18	PF13238.1	gi|292656556|ref|YP_003536453.1|	-	0.12	12.6	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.10	gi|292656556|ref|YP_003536453.1|	-	0.18	10.4	0.0	0.39	9.3	0.0	1.5	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.17	gi|292656557|ref|YP_003536454.1|	-	3.6e-17	62.4	8.9	3.6e-17	62.4	6.2	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_3	PF00497.15	gi|292656558|ref|YP_003536455.1|	-	6.7e-63	211.9	1.7	8.1e-63	211.6	1.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Phosphonate-bd	PF12974.2	gi|292656558|ref|YP_003536455.1|	-	5.9e-06	25.8	0.1	1.2e-05	24.8	0.1	1.6	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.4	gi|292656558|ref|YP_003536455.1|	-	1.6e-05	24.5	3.8	3.2e-05	23.5	2.6	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NMT1	PF09084.6	gi|292656558|ref|YP_003536455.1|	-	0.0005	19.7	0.1	0.00072	19.2	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
COX15-CtaA	PF02628.10	gi|292656559|ref|YP_003536456.1|	-	2e-25	89.3	37.3	2.3e-25	89.1	15.3	2.6	1	1	2	3	3	3	2	Cytochrome	oxidase	assembly	protein
OrfB_IS605	PF01385.14	gi|292656560|ref|YP_003536457.1|	-	4e-47	160.5	0.0	5.7e-47	160.0	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|292656560|ref|YP_003536457.1|	-	1.9e-22	78.6	1.9	3.7e-22	77.7	1.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|292656560|ref|YP_003536457.1|	-	0.021	14.7	2.9	0.036	13.9	0.9	2.1	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|292656560|ref|YP_003536457.1|	-	0.31	10.8	5.0	1	9.2	3.5	1.9	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Peptidase_M24	PF00557.19	gi|292656561|ref|YP_003536458.1|	-	8.6e-19	67.9	1.0	1.4e-18	67.2	0.7	1.3	1	0	0	1	1	1	1	Metallopeptidase	family	M24
PTA_PTB	PF01515.14	gi|292656562|ref|YP_003536459.1|	-	7.4e-97	324.2	0.0	1e-96	323.7	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
Malic_M	PF03949.10	gi|292656562|ref|YP_003536459.1|	-	1.9e-69	234.0	0.3	1.9e-69	234.0	0.2	1.5	2	0	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|292656562|ref|YP_003536459.1|	-	2.8e-30	105.2	0.2	4e-28	98.2	0.2	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
DUF1974	PF09317.6	gi|292656562|ref|YP_003536459.1|	-	0.051	12.9	0.2	0.097	12.0	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1974)
TatC	PF00902.13	gi|292656563|ref|YP_003536460.1|	-	0.00039	19.8	0.2	0.00071	19.0	0.0	1.6	2	0	0	2	2	2	1	Sec-independent	protein	translocase	protein	(TatC)
PsaL	PF02605.10	gi|292656563|ref|YP_003536460.1|	-	0.032	13.7	0.7	0.075	12.5	0.5	1.8	1	1	0	1	1	1	0	Photosystem	I	reaction	centre	subunit	XI
RNase_H	PF00075.19	gi|292656564|ref|YP_003536461.1|	-	0.0016	18.7	0.0	0.0018	18.5	0.0	1.2	1	0	0	1	1	1	1	RNase	H
BPD_transp_1	PF00528.17	gi|292656565|ref|YP_003536462.1|	-	1.3e-39	135.5	13.1	2.2e-39	134.8	9.1	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|292656566|ref|YP_003536463.1|	-	3.5e-23	82.4	0.0	6.6e-23	81.5	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292656566|ref|YP_003536463.1|	-	1.5e-17	63.6	0.0	3.1e-17	62.6	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292656566|ref|YP_003536463.1|	-	4.3e-09	36.7	0.0	1.4e-08	35.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|292656566|ref|YP_003536463.1|	-	0.0029	17.7	0.1	0.23	11.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|292656566|ref|YP_003536463.1|	-	0.0089	15.1	0.0	0.032	13.2	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|292656566|ref|YP_003536463.1|	-	0.15	11.4	0.2	13	5.1	0.0	2.4	1	1	1	2	2	2	0	AAA-like	domain
ABC_tran	PF00005.22	gi|292656567|ref|YP_003536464.1|	-	1.4e-30	106.3	0.0	1.8e-30	106.0	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|292656567|ref|YP_003536464.1|	-	2.5e-11	43.7	0.0	4.6e-11	42.9	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|292656567|ref|YP_003536464.1|	-	7.5e-07	29.3	0.0	0.00019	21.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292656567|ref|YP_003536464.1|	-	0.0013	18.9	0.1	0.0074	16.4	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292656567|ref|YP_003536464.1|	-	0.002	17.4	0.0	0.029	13.6	0.0	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|292656567|ref|YP_003536464.1|	-	0.019	14.9	1.1	0.051	13.5	0.8	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.9	gi|292656567|ref|YP_003536464.1|	-	0.023	14.4	0.0	1	9.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.1	gi|292656567|ref|YP_003536464.1|	-	0.033	13.7	0.1	0.064	12.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Sigma54_activat	PF00158.21	gi|292656567|ref|YP_003536464.1|	-	0.051	13.0	0.1	7.4	6.0	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
SbcCD_C	PF13558.1	gi|292656567|ref|YP_003536464.1|	-	0.058	13.3	0.1	0.24	11.3	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.1	gi|292656567|ref|YP_003536464.1|	-	0.075	12.4	0.0	2.7	7.3	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AIG1	PF04548.11	gi|292656567|ref|YP_003536464.1|	-	0.1	11.6	0.2	0.16	11.0	0.1	1.3	1	0	0	1	1	1	0	AIG1	family
DUF258	PF03193.11	gi|292656567|ref|YP_003536464.1|	-	0.11	11.6	0.1	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|292656567|ref|YP_003536464.1|	-	0.13	12.6	0.1	0.28	11.4	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|292656567|ref|YP_003536464.1|	-	1.8	6.9	3.3	5.3	5.3	0.0	2.2	3	0	0	3	3	3	0	AAA	domain
EamA	PF00892.15	gi|292656569|ref|YP_003536466.1|	-	9.6e-30	103.2	22.2	9.9e-16	57.9	5.3	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|292656569|ref|YP_003536466.1|	-	0.0057	16.8	4.1	0.0057	16.8	2.9	3.4	2	2	1	4	4	4	2	Multidrug	resistance	efflux	transporter
TraX	PF05857.6	gi|292656569|ref|YP_003536466.1|	-	0.36	10.4	4.4	0.13	11.8	0.2	2.2	1	1	0	2	2	2	0	TraX	protein
TPT	PF03151.11	gi|292656569|ref|YP_003536466.1|	-	1.5	8.4	17.3	0.35	10.4	2.8	3.1	3	1	0	3	3	3	0	Triose-phosphate	Transporter	family
Aldo_ket_red	PF00248.16	gi|292656571|ref|YP_003536468.1|	-	3.2e-78	262.4	0.0	3.9e-78	262.1	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF1684	PF07920.6	gi|292656572|ref|YP_003536469.1|	-	1.7e-55	186.7	0.1	2.2e-55	186.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
DUF872	PF05915.7	gi|292656573|ref|YP_003536470.1|	-	0.31	10.8	1.9	1	9.2	0.2	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
ExoD	PF06055.7	gi|292656573|ref|YP_003536470.1|	-	0.4	9.7	3.3	0.43	9.6	2.3	1.0	1	0	0	1	1	1	0	Exopolysaccharide	synthesis,	ExoD
DUF1628	PF07790.6	gi|292656574|ref|YP_003536471.1|	-	3.4e-22	78.9	9.6	6.6e-22	78.0	3.4	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1628)
BPD_transp_1	PF00528.17	gi|292656574|ref|YP_003536471.1|	-	0.04	13.4	1.2	0.051	13.0	0.8	1.2	1	0	0	1	1	1	0	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1628	PF07790.6	gi|292656575|ref|YP_003536472.1|	-	1.4e-25	89.8	3.6	1.9e-25	89.4	1.3	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
Ribonuc_red_lgC	PF02867.10	gi|292656576|ref|YP_003536473.1|	-	4.7e-150	500.7	0.0	5.8e-150	500.4	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
TSCPD	PF12637.2	gi|292656576|ref|YP_003536473.1|	-	3.7e-27	94.0	0.0	1.4e-26	92.2	0.0	2.1	1	0	0	1	1	1	1	TSCPD	domain
Ribonuc_red_lgN	PF00317.16	gi|292656576|ref|YP_003536473.1|	-	1.2e-22	79.4	0.0	5.4e-22	77.3	0.0	2.2	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
TraG-D_C	PF12696.2	gi|292656576|ref|YP_003536473.1|	-	0.1	12.4	0.0	0.34	10.7	0.0	1.8	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
TrwB_AAD_bind	PF10412.4	gi|292656576|ref|YP_003536473.1|	-	0.11	11.0	0.4	0.22	10.0	0.0	1.6	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|292656576|ref|YP_003536473.1|	-	0.72	9.1	6.5	1.6	8.0	4.5	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
GATase	PF00117.23	gi|292656577|ref|YP_003536474.1|	-	1.7e-45	154.8	0.0	1.9e-45	154.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292656577|ref|YP_003536474.1|	-	3.9e-07	29.7	0.0	2.1e-06	27.3	0.0	1.9	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.13	gi|292656578|ref|YP_003536475.1|	-	3.8e-91	304.9	0.0	1.7e-90	302.8	0.0	1.8	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|292656578|ref|YP_003536475.1|	-	1.2e-20	74.0	0.5	2.5e-19	69.7	0.1	3.1	2	2	1	3	3	3	1	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.17	gi|292656579|ref|YP_003536476.1|	-	1.5e-37	129.0	0.0	1.8e-37	128.8	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TMP-TENI	PF02581.12	gi|292656579|ref|YP_003536476.1|	-	0.07	12.2	0.4	0.31	10.1	0.0	2.1	3	0	0	3	3	3	0	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|292656579|ref|YP_003536476.1|	-	0.075	12.1	6.0	0.16	11.0	4.1	1.6	1	1	0	1	1	1	0	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|292656579|ref|YP_003536476.1|	-	0.2	10.8	4.1	0.089	12.0	0.1	2.3	2	1	1	3	3	3	0	Histidine	biosynthesis	protein
DUF982	PF06169.7	gi|292656579|ref|YP_003536476.1|	-	0.21	11.3	2.8	5.4	6.8	0.2	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF982)
Glycos_transf_3	PF00591.16	gi|292656580|ref|YP_003536477.1|	-	4.6e-103	344.0	2.6	6.2e-103	343.6	1.8	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|292656580|ref|YP_003536477.1|	-	3.1e-18	65.0	2.9	7.4e-18	63.8	2.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.3	gi|292656580|ref|YP_003536477.1|	-	0.034	13.6	0.0	0.098	12.1	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2717)
DUF788	PF05620.6	gi|292656581|ref|YP_003536478.1|	-	0.049	13.4	0.0	0.053	13.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF788)
DUF2852	PF11014.3	gi|292656581|ref|YP_003536478.1|	-	0.092	12.7	0.0	0.1	12.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2852)
DUF2062	PF09835.4	gi|292656582|ref|YP_003536479.1|	-	2e-19	69.7	5.8	2.4e-19	69.4	4.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
RskA	PF10099.4	gi|292656582|ref|YP_003536479.1|	-	0.68	9.6	7.7	2.3	7.9	0.5	2.1	2	0	0	2	2	2	0	Anti-sigma-K	factor	rskA
CBS	PF00571.23	gi|292656583|ref|YP_003536480.1|	-	2.5e-23	81.5	1.1	3.4e-11	42.7	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
ACP_syn_III	PF08545.5	gi|292656583|ref|YP_003536480.1|	-	0.12	12.0	3.1	6	6.5	0.3	2.2	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
MCPsignal	PF00015.16	gi|292656584|ref|YP_003536481.1|	-	2.1e-51	174.4	50.6	9.7e-47	159.2	22.4	2.5	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|292656584|ref|YP_003536481.1|	-	1.1e-11	44.6	8.4	2.9e-10	40.1	1.3	5.9	6	2	1	7	7	5	2	HAMP	domain
AAA_13	PF13166.1	gi|292656584|ref|YP_003536481.1|	-	0.00058	18.4	17.4	0.00096	17.7	3.6	2.1	1	1	1	2	2	2	1	AAA	domain
TMF_TATA_bd	PF12325.3	gi|292656584|ref|YP_003536481.1|	-	0.0057	16.3	1.9	0.0057	16.3	1.3	3.9	2	2	2	4	4	4	1	TATA	element	modulatory	factor	1	TATA	binding
BLOC1_2	PF10046.4	gi|292656584|ref|YP_003536481.1|	-	0.012	15.7	23.1	0.15	12.2	0.4	4.9	3	1	1	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2130	PF09903.4	gi|292656584|ref|YP_003536481.1|	-	0.014	14.1	2.0	0.083	11.6	0.1	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
DUF948	PF06103.6	gi|292656584|ref|YP_003536481.1|	-	0.027	14.3	27.6	0.54	10.1	1.0	6.1	4	2	1	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
IFT57	PF10498.4	gi|292656584|ref|YP_003536481.1|	-	0.14	10.8	8.8	1.9	7.1	1.2	2.8	2	1	0	3	3	3	0	Intra-flagellar	transport	protein	57
Reo_sigmaC	PF04582.7	gi|292656584|ref|YP_003536481.1|	-	0.19	10.8	30.6	0.22	10.6	7.0	3.2	1	1	1	3	3	3	0	Reovirus	sigma	C	capsid	protein
Baculo_PEP_C	PF04513.7	gi|292656584|ref|YP_003536481.1|	-	0.23	11.3	20.6	0.63	9.8	0.7	4.4	2	1	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF812	PF05667.6	gi|292656584|ref|YP_003536481.1|	-	0.24	9.8	22.6	0.92	7.9	7.8	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
LOH1CR12	PF10158.4	gi|292656584|ref|YP_003536481.1|	-	0.32	10.7	10.7	0.86	9.3	0.2	3.7	3	1	1	4	4	4	0	Tumour	suppressor	protein
Nup54	PF13874.1	gi|292656584|ref|YP_003536481.1|	-	0.39	10.3	9.1	1.7	8.2	0.7	3.4	2	2	1	3	3	3	0	Nucleoporin	complex	subunit	54
LemA	PF04011.7	gi|292656584|ref|YP_003536481.1|	-	0.66	9.0	4.5	0.31	10.1	0.2	2.4	1	1	0	2	2	2	0	LemA	family
ISG65-75	PF11727.3	gi|292656584|ref|YP_003536481.1|	-	0.82	8.6	24.2	0.15	11.0	0.8	3.5	2	2	1	3	3	3	0	Invariant	surface	glycoprotein
Laminin_II	PF06009.7	gi|292656584|ref|YP_003536481.1|	-	0.87	9.3	28.5	1.9	8.2	1.0	4.9	1	1	2	4	4	4	0	Laminin	Domain	II
Spectrin	PF00435.16	gi|292656584|ref|YP_003536481.1|	-	0.93	9.8	16.3	7.1	6.9	0.2	5.2	3	1	3	6	6	6	0	Spectrin	repeat
Prominin	PF05478.6	gi|292656584|ref|YP_003536481.1|	-	1.1	6.6	13.7	0.68	7.4	7.5	1.8	1	1	0	1	1	1	0	Prominin
Sec34	PF04136.10	gi|292656584|ref|YP_003536481.1|	-	1.2	8.8	5.8	2.3	7.8	0.1	3.1	2	2	1	3	3	3	0	Sec34-like	family
APG17	PF04108.7	gi|292656584|ref|YP_003536481.1|	-	1.7	7.3	14.3	10	4.8	9.6	2.4	1	1	0	1	1	1	0	Autophagy	protein	Apg17
ERM	PF00769.14	gi|292656584|ref|YP_003536481.1|	-	2.4	7.6	15.1	0.26	10.8	4.9	2.3	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
Spc7	PF08317.6	gi|292656584|ref|YP_003536481.1|	-	3.9	6.0	15.9	3	6.4	0.2	2.6	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF1664	PF07889.7	gi|292656584|ref|YP_003536481.1|	-	4.7	7.0	22.0	1.1	9.0	0.9	4.5	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
DUF4200	PF13863.1	gi|292656584|ref|YP_003536481.1|	-	4.9	7.1	8.9	20	5.1	0.1	3.4	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
COG2	PF06148.6	gi|292656584|ref|YP_003536481.1|	-	6.2	6.7	20.7	3.9	7.3	1.5	4.8	2	2	1	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Fib_alpha	PF08702.5	gi|292656584|ref|YP_003536481.1|	-	6.3	6.9	10.9	3.9	7.5	0.2	3.6	1	1	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
Syntaxin	PF00804.20	gi|292656584|ref|YP_003536481.1|	-	6.5	6.9	21.2	12	6.1	1.7	4.1	1	1	1	2	2	2	0	Syntaxin
Filament	PF00038.16	gi|292656584|ref|YP_003536481.1|	-	6.9	6.0	21.0	1.3	8.4	3.9	3.0	1	1	0	2	2	2	0	Intermediate	filament	protein
Prefoldin_2	PF01920.15	gi|292656584|ref|YP_003536481.1|	-	8.2	6.2	8.8	36	4.1	1.8	3.5	2	1	1	3	3	3	0	Prefoldin	subunit
DZR	PF12773.2	gi|292656585|ref|YP_003536482.1|	-	0.01	15.6	0.4	0.014	15.2	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L37e	PF01907.14	gi|292656585|ref|YP_003536482.1|	-	3.8	7.4	5.5	6.4	6.6	3.8	1.3	1	1	0	1	1	1	0	Ribosomal	protein	L37e
CoA_binding	PF02629.14	gi|292656586|ref|YP_003536483.1|	-	9.9e-26	90.1	2.7	1.9e-25	89.1	0.3	2.2	2	0	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|292656586|ref|YP_003536483.1|	-	3.1e-13	49.5	0.6	5.7e-13	48.7	0.4	1.4	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|292656586|ref|YP_003536483.1|	-	4.8e-09	35.9	0.0	7.1e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|292656586|ref|YP_003536483.1|	-	2.2e-08	34.2	0.0	8.3e-06	25.9	0.0	2.2	2	0	0	2	2	2	2	CoA	binding	domain
GFO_IDH_MocA	PF01408.17	gi|292656586|ref|YP_003536483.1|	-	0.039	14.4	0.1	0.15	12.5	0.0	1.9	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ATP-grasp_2	PF08442.5	gi|292656587|ref|YP_003536484.1|	-	6.4e-67	224.8	0.3	9.7e-67	224.2	0.2	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|292656587|ref|YP_003536484.1|	-	8.7e-19	67.6	7.4	1.9e-17	63.2	3.8	2.8	2	1	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|292656587|ref|YP_003536484.1|	-	1.2e-13	50.9	0.6	3.5e-13	49.4	0.4	1.8	1	0	0	1	1	1	1	CoA-ligase
CPSase_L_D2	PF02786.12	gi|292656587|ref|YP_003536484.1|	-	1.8e-12	46.9	2.6	8.3e-10	38.3	0.5	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.1	gi|292656587|ref|YP_003536484.1|	-	1.1e-09	38.3	0.4	4.8e-09	36.2	0.1	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|292656587|ref|YP_003536484.1|	-	2.3e-08	33.5	0.1	4.1e-08	32.7	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.14	gi|292656587|ref|YP_003536484.1|	-	6.8e-08	32.2	1.6	1.1e-07	31.5	0.2	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATPgrasp_Ter	PF15632.1	gi|292656587|ref|YP_003536484.1|	-	0.009	14.7	0.0	0.017	13.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
RimK	PF08443.6	gi|292656587|ref|YP_003536484.1|	-	0.01	15.2	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
ADH_zinc_N	PF00107.21	gi|292656589|ref|YP_003536486.1|	-	5.4e-19	68.0	0.7	9.7e-19	67.2	0.5	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|292656589|ref|YP_003536486.1|	-	6.6e-17	62.6	0.9	6.6e-17	62.6	0.6	2.1	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|292656589|ref|YP_003536486.1|	-	4.9e-14	52.0	0.4	2.8e-13	49.5	0.2	2.1	1	1	1	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
DUF2493	PF10686.4	gi|292656589|ref|YP_003536486.1|	-	0.002	17.6	5.5	0.0037	16.7	3.1	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2493)
adh_short	PF00106.20	gi|292656589|ref|YP_003536486.1|	-	0.0026	17.6	2.7	0.0026	17.6	1.9	2.4	3	0	0	3	3	3	1	short	chain	dehydrogenase
Eno-Rase_NADH_b	PF12242.3	gi|292656589|ref|YP_003536486.1|	-	0.15	11.8	3.5	0.39	10.5	2.4	1.6	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DUF4225	PF13988.1	gi|292656589|ref|YP_003536486.1|	-	0.29	10.5	1.3	0.47	9.8	0.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
adh_short	PF00106.20	gi|292656590|ref|YP_003536487.1|	-	2.9e-23	82.6	0.3	4.2e-23	82.0	0.2	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292656590|ref|YP_003536487.1|	-	7.4e-19	68.4	0.0	2.8e-18	66.5	0.0	1.7	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|292656590|ref|YP_003536487.1|	-	2.2e-08	33.8	0.0	3.7e-08	33.0	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.5	gi|292656590|ref|YP_003536487.1|	-	3.6e-07	30.0	0.3	9.2e-07	28.6	0.2	1.6	1	1	0	1	1	1	1	KR	domain
3Beta_HSD	PF01073.14	gi|292656590|ref|YP_003536487.1|	-	6.6e-05	21.7	0.1	9.6e-05	21.2	0.1	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.8	gi|292656590|ref|YP_003536487.1|	-	0.00019	20.7	0.1	0.00039	19.7	0.0	1.5	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.12	gi|292656590|ref|YP_003536487.1|	-	0.012	14.5	0.0	0.018	13.9	0.0	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|292656590|ref|YP_003536487.1|	-	0.017	15.1	1.4	0.026	14.5	0.9	1.5	1	1	0	1	1	1	0	NADH(P)-binding
Eno-Rase_NADH_b	PF12242.3	gi|292656590|ref|YP_003536487.1|	-	0.054	13.2	0.5	0.17	11.6	0.3	1.8	2	0	0	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DapB_N	PF01113.15	gi|292656590|ref|YP_003536487.1|	-	0.097	12.5	0.1	0.18	11.7	0.1	1.3	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
SNF	PF00209.13	gi|292656591|ref|YP_003536488.1|	-	1.3e-51	175.7	33.2	1.7e-30	105.9	11.0	2.0	1	1	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
SNF	PF00209.13	gi|292656592|ref|YP_003536489.1|	-	2.4e-46	158.2	23.8	1.9e-25	89.3	2.6	2.2	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
DUF3742	PF12553.3	gi|292656592|ref|YP_003536489.1|	-	0.24	11.8	2.7	1.5	9.3	0.2	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3742)
Carboxyl_trans	PF01039.17	gi|292656593|ref|YP_003536490.1|	-	2.2e-203	676.0	0.0	2.5e-203	675.9	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.6	gi|292656593|ref|YP_003536490.1|	-	0.0029	16.8	0.0	0.0089	15.2	0.0	1.7	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
CbiM	PF01891.11	gi|292656595|ref|YP_003536492.1|	-	0.025	14.1	2.9	0.61	9.6	0.0	2.1	2	0	0	2	2	2	0	Cobalt	uptake	substrate-specific	transmembrane	region
Bax1-I	PF01027.15	gi|292656595|ref|YP_003536492.1|	-	0.24	11.0	2.5	0.27	10.7	1.7	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF202	PF02656.10	gi|292656595|ref|YP_003536492.1|	-	0.97	9.7	4.7	7.1	6.9	3.3	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF4233	PF14017.1	gi|292656595|ref|YP_003536492.1|	-	1.1	9.1	7.0	7.6	6.5	0.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4233)
DUF389	PF04087.9	gi|292656595|ref|YP_003536492.1|	-	5.6	6.9	7.4	18	5.2	5.1	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF389)
GDPD	PF03009.12	gi|292656596|ref|YP_003536493.1|	-	8.2e-34	117.2	0.0	8.3e-32	110.6	0.0	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|292656596|ref|YP_003536493.1|	-	0.0012	19.0	0.1	0.0023	18.0	0.0	1.5	1	0	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
Ribosomal_S17e	PF00833.13	gi|292656597|ref|YP_003536494.1|	-	1.6e-14	53.6	0.1	2e-14	53.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DUF4019	PF13211.1	gi|292656597|ref|YP_003536494.1|	-	0.048	13.9	0.0	0.049	13.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
DUF447	PF04289.7	gi|292656598|ref|YP_003536495.1|	-	1.6e-36	125.4	0.0	2.1e-36	125.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Phage_P2_GpE	PF06528.7	gi|292656598|ref|YP_003536495.1|	-	0.056	12.8	0.6	0.11	11.9	0.4	1.5	1	0	0	1	1	1	0	Phage	P2	GpE
CitG	PF01874.11	gi|292656599|ref|YP_003536496.1|	-	2.6e-60	203.9	5.5	3e-60	203.7	3.8	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Dus	PF01207.12	gi|292656600|ref|YP_003536497.1|	-	6.1e-10	38.4	1.0	2.9e-09	36.1	0.7	1.8	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
Radical_SAM	PF04055.16	gi|292656600|ref|YP_003536497.1|	-	0.00016	21.9	0.0	0.74	9.9	0.0	2.5	1	1	2	3	3	3	2	Radical	SAM	superfamily
His_biosynth	PF00977.16	gi|292656600|ref|YP_003536497.1|	-	0.0027	17.0	0.0	0.0082	15.4	0.0	1.7	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|292656600|ref|YP_003536497.1|	-	0.014	14.6	0.0	0.032	13.4	0.0	1.5	1	1	0	1	1	1	0	PcrB	family
IMPDH	PF00478.20	gi|292656600|ref|YP_003536497.1|	-	0.11	11.3	0.2	0.13	11.1	0.1	1.1	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
Ribul_P_3_epim	PF00834.14	gi|292656600|ref|YP_003536497.1|	-	0.12	11.5	0.2	0.21	10.6	0.1	1.4	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
IGPS	PF00218.16	gi|292656600|ref|YP_003536497.1|	-	0.15	11.1	0.0	0.27	10.2	0.0	1.5	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
UPF0052	PF01933.13	gi|292656601|ref|YP_003536498.1|	-	5e-42	144.2	0.0	7.4e-42	143.7	0.0	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
DUF998	PF06197.8	gi|292656602|ref|YP_003536499.1|	-	0.0089	15.3	12.0	0.0094	15.2	8.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
RDD	PF06271.7	gi|292656602|ref|YP_003536499.1|	-	0.11	12.4	1.1	0.12	12.2	0.8	1.2	1	0	0	1	1	1	0	RDD	family
HD	PF01966.17	gi|292656603|ref|YP_003536500.1|	-	5.6e-10	39.2	2.9	1.3e-09	38.0	2.0	1.7	1	0	0	1	1	1	1	HD	domain
HD	PF01966.17	gi|292656604|ref|YP_003536501.1|	-	6.7e-10	39.0	2.8	6.7e-10	39.0	1.9	1.8	2	0	0	2	2	2	1	HD	domain
Amidohydro_1	PF01979.15	gi|292656605|ref|YP_003536502.1|	-	1.6e-20	74.0	4.2	3.3e-19	69.7	2.9	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|292656605|ref|YP_003536502.1|	-	1.9e-11	44.5	12.2	1.5e-10	41.5	8.4	2.1	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|292656605|ref|YP_003536502.1|	-	2.9e-06	27.0	0.0	6.5e-06	25.8	0.0	1.7	1	0	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|292656605|ref|YP_003536502.1|	-	2.9e-05	23.1	0.0	4.5e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.6	gi|292656605|ref|YP_003536502.1|	-	0.009	15.2	7.9	0.061	12.5	2.3	2.6	1	1	1	2	2	2	2	Amidohydrolase	family
Usp	PF00582.21	gi|292656606|ref|YP_003536503.1|	-	5.4e-38	130.3	2.7	5.4e-38	130.3	1.8	1.5	2	0	0	2	2	2	1	Universal	stress	protein	family
BPL_LplA_LipB	PF03099.14	gi|292656607|ref|YP_003536504.1|	-	1.2e-17	64.0	0.0	2e-17	63.3	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.7	gi|292656607|ref|YP_003536504.1|	-	6.9e-11	41.6	0.0	1.1e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
BPL_C	PF02237.12	gi|292656607|ref|YP_003536504.1|	-	1.5e-07	31.0	0.1	2.7e-07	30.1	0.1	1.5	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
HTH_24	PF13412.1	gi|292656607|ref|YP_003536504.1|	-	1.9e-06	27.1	0.0	3.2e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|292656607|ref|YP_003536504.1|	-	5.2e-06	26.1	0.0	1.2e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656607|ref|YP_003536504.1|	-	9.5e-05	21.9	0.0	0.00017	21.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|292656607|ref|YP_003536504.1|	-	0.00042	19.9	0.0	0.0012	18.4	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|292656607|ref|YP_003536504.1|	-	0.002	17.6	0.2	0.0078	15.7	0.1	2.2	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.14	gi|292656607|ref|YP_003536504.1|	-	0.032	13.9	0.0	0.065	12.9	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|292656607|ref|YP_003536504.1|	-	0.039	13.8	0.0	0.071	13.0	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|292656607|ref|YP_003536504.1|	-	0.072	12.7	0.0	0.24	11.0	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_10	PF04967.7	gi|292656607|ref|YP_003536504.1|	-	0.13	11.8	0.0	0.29	10.7	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
CPSase_L_D2	PF02786.12	gi|292656608|ref|YP_003536505.1|	-	4.9e-75	251.4	0.1	7.6e-75	250.8	0.1	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|292656608|ref|YP_003536505.1|	-	2.6e-42	143.3	0.2	2.1e-41	140.4	0.1	2.5	3	0	0	3	3	3	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Biotin_carb_C	PF02785.14	gi|292656608|ref|YP_003536505.1|	-	8.9e-37	125.3	0.0	2.4e-36	123.9	0.0	1.8	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
ATP-grasp_4	PF13535.1	gi|292656608|ref|YP_003536505.1|	-	1.6e-20	73.5	1.1	5.9e-20	71.7	0.4	2.1	2	0	0	2	2	2	1	ATP-grasp	domain
Biotin_lipoyl	PF00364.17	gi|292656608|ref|YP_003536505.1|	-	4.1e-18	64.7	4.1	1.7e-17	62.8	2.8	2.2	1	0	0	1	1	1	1	Biotin-requiring	enzyme
ATPgrasp_Ter	PF15632.1	gi|292656608|ref|YP_003536505.1|	-	8.9e-15	54.2	0.3	4.9e-14	51.8	0.1	2.2	2	1	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|292656608|ref|YP_003536505.1|	-	1.8e-11	43.8	0.0	3.8e-11	42.7	0.0	1.5	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
Biotin_lipoyl_2	PF13533.1	gi|292656608|ref|YP_003536505.1|	-	6.4e-10	38.5	2.8	0.00048	19.7	0.3	3.3	3	1	1	4	4	4	2	Biotin-lipoyl	like
ATP-grasp	PF02222.17	gi|292656608|ref|YP_003536505.1|	-	5.2e-09	35.6	0.1	3e-08	33.2	0.1	2.1	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|292656608|ref|YP_003536505.1|	-	0.00039	20.3	0.0	0.001	18.9	0.0	1.7	1	0	0	1	1	1	1	ATP-grasp	domain
HlyD	PF00529.15	gi|292656608|ref|YP_003536505.1|	-	0.0013	18.1	1.7	0.15	11.3	0.3	2.5	2	0	0	2	2	2	1	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|292656608|ref|YP_003536505.1|	-	0.0018	18.5	0.4	2.5	8.4	0.0	3.3	3	0	0	3	3	3	1	HlyD	family	secretion	protein
GARS_A	PF01071.14	gi|292656608|ref|YP_003536505.1|	-	0.0021	17.6	0.1	0.0039	16.7	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.1	gi|292656608|ref|YP_003536505.1|	-	0.0058	15.8	0.0	0.011	14.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
DUF4019	PF13211.1	gi|292656608|ref|YP_003536505.1|	-	0.011	16.0	0.1	0.028	14.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
RimK	PF08443.6	gi|292656608|ref|YP_003536505.1|	-	0.012	15.1	0.0	0.75	9.2	0.0	2.2	2	0	0	2	2	2	0	RimK-like	ATP-grasp	domain
GCV_H	PF01597.14	gi|292656608|ref|YP_003536505.1|	-	0.021	14.4	0.6	0.061	13.0	0.4	1.7	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
B12-binding	PF02310.14	gi|292656608|ref|YP_003536505.1|	-	0.023	14.5	0.8	17	5.3	0.1	3.4	3	1	0	3	3	2	0	B12	binding	domain
QRPTase_N	PF02749.11	gi|292656608|ref|YP_003536505.1|	-	0.11	12.3	0.2	14	5.6	0.0	3.2	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PTS_EIIA_1	PF00358.15	gi|292656608|ref|YP_003536505.1|	-	0.14	11.7	2.0	2.1	7.9	0.0	3.1	3	1	1	4	4	4	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
Semialdhyde_dh	PF01118.19	gi|292656609|ref|YP_003536506.1|	-	3.2e-34	117.8	0.0	6e-34	116.9	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|292656609|ref|YP_003536506.1|	-	9.8e-30	103.7	0.0	1.4e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|292656609|ref|YP_003536506.1|	-	9.2e-05	22.3	0.0	0.00018	21.4	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.11	gi|292656609|ref|YP_003536506.1|	-	0.00072	20.0	0.0	0.0014	19.1	0.0	1.5	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
GFO_IDH_MocA	PF01408.17	gi|292656609|ref|YP_003536506.1|	-	0.00074	20.0	0.0	0.0014	19.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Gp_dh_C	PF02800.15	gi|292656609|ref|YP_003536506.1|	-	0.021	14.2	0.0	0.089	12.2	0.0	1.9	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
HPP	PF04982.8	gi|292656610|ref|YP_003536507.1|	-	0.00091	19.0	1.0	0.0012	18.7	0.7	1.2	1	0	0	1	1	1	1	HPP	family
IlvB_leader	PF08049.6	gi|292656610|ref|YP_003536507.1|	-	0.35	10.6	4.1	0.52	10.0	2.8	1.3	1	0	0	1	1	1	0	IlvB	leader	peptide
DZR	PF12773.2	gi|292656611|ref|YP_003536508.1|	-	0.0071	16.1	9.0	1.2	9.0	6.3	2.9	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.6	gi|292656611|ref|YP_003536508.1|	-	0.038	13.8	8.9	0.3	10.9	1.2	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1272)
zf-C4_Topoisom	PF01396.14	gi|292656611|ref|YP_003536508.1|	-	0.11	12.0	3.6	0.13	11.7	0.0	2.5	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
RNHCP	PF12647.2	gi|292656611|ref|YP_003536508.1|	-	0.45	10.3	5.0	0.15	11.8	0.9	2.1	2	1	0	2	2	2	0	RNHCP	domain
Zn-ribbon_8	PF09723.5	gi|292656611|ref|YP_003536508.1|	-	0.46	10.4	7.8	5.1	7.1	1.3	3.5	2	1	2	4	4	4	0	Zinc	ribbon	domain
C1_1	PF00130.17	gi|292656611|ref|YP_003536508.1|	-	0.52	10.0	6.4	3.9	7.2	0.0	2.9	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-piccolo	PF05715.8	gi|292656611|ref|YP_003536508.1|	-	0.88	9.6	6.2	1.5	8.8	0.2	2.5	3	0	0	3	3	3	0	Piccolo	Zn-finger
TF_Zn_Ribbon	PF08271.7	gi|292656611|ref|YP_003536508.1|	-	1.2	8.4	12.1	4.9	6.5	0.5	3.7	1	1	3	4	4	4	0	TFIIB	zinc-binding
DUF2318	PF10080.4	gi|292656611|ref|YP_003536508.1|	-	1.4	8.7	4.2	0.56	10.0	1.5	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
UPF0547	PF10571.4	gi|292656611|ref|YP_003536508.1|	-	2.3	8.0	10.5	6.8	6.4	1.5	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Auto_anti-p27	PF06677.7	gi|292656611|ref|YP_003536508.1|	-	2.3	8.0	0.0	2.3	8.0	0.0	2.9	2	1	1	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-TFIIB	PF13453.1	gi|292656611|ref|YP_003536508.1|	-	2.4	7.4	11.5	6.6	6.0	0.1	3.2	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.1	gi|292656611|ref|YP_003536508.1|	-	6.9	6.0	11.1	11	5.3	0.0	3.8	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|292656611|ref|YP_003536508.1|	-	7.9	6.2	9.4	17	5.1	3.2	2.9	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
PNPase_C	PF12111.3	gi|292656612|ref|YP_003536509.1|	-	0.52	9.5	5.8	0.5	9.6	0.7	2.3	2	1	0	2	2	2	0	Polyribonucleotide	phosphorylase	C	terminal
DUF2029	PF09594.5	gi|292656613|ref|YP_003536510.1|	-	0.014	14.9	0.2	0.015	14.8	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2029)
TruB_N	PF01509.13	gi|292656614|ref|YP_003536511.1|	-	1.5e-21	77.1	0.1	2.2e-12	47.3	0.0	3.1	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
PUA	PF01472.15	gi|292656614|ref|YP_003536511.1|	-	4.8e-10	39.0	0.5	8.8e-10	38.1	0.4	1.4	1	0	0	1	1	1	1	PUA	domain
DKCLD	PF08068.7	gi|292656614|ref|YP_003536511.1|	-	3e-09	36.6	0.1	6.2e-09	35.6	0.1	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
Cytidylate_kin2	PF13189.1	gi|292656615|ref|YP_003536512.1|	-	6.9e-18	65.1	0.6	2.3e-16	60.2	0.4	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|292656615|ref|YP_003536512.1|	-	5.3e-17	62.3	0.0	8.4e-17	61.6	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|292656615|ref|YP_003536512.1|	-	1.2e-14	55.2	2.3	1.2e-14	55.1	0.3	1.8	1	1	1	2	2	2	1	AAA	domain
ADK	PF00406.17	gi|292656615|ref|YP_003536512.1|	-	1.3e-08	34.8	0.0	3.6e-08	33.4	0.0	1.7	1	1	1	2	2	2	1	Adenylate	kinase
AAA_33	PF13671.1	gi|292656615|ref|YP_003536512.1|	-	4.2e-08	33.1	0.1	1.1e-06	28.6	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|292656615|ref|YP_003536512.1|	-	1.9e-05	24.6	1.1	0.0002	21.2	0.8	2.0	1	1	0	1	1	1	1	Shikimate	kinase
AAA	PF00004.24	gi|292656615|ref|YP_003536512.1|	-	0.00023	21.3	0.0	0.00037	20.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|292656615|ref|YP_003536512.1|	-	0.0003	20.4	0.1	0.00075	19.2	0.0	1.7	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|292656615|ref|YP_003536512.1|	-	0.0011	19.1	0.0	0.0015	18.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
KTI12	PF08433.5	gi|292656615|ref|YP_003536512.1|	-	0.0012	18.0	0.0	0.002	17.3	0.0	1.4	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
Thymidylate_kin	PF02223.12	gi|292656615|ref|YP_003536512.1|	-	0.0013	18.1	0.0	1.1	8.5	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
AAA_28	PF13521.1	gi|292656615|ref|YP_003536512.1|	-	0.0019	18.1	0.0	0.004	17.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|292656615|ref|YP_003536512.1|	-	0.0022	17.4	0.1	0.0032	16.9	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292656615|ref|YP_003536512.1|	-	0.0027	17.7	0.3	0.0042	17.0	0.2	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|292656615|ref|YP_003536512.1|	-	0.015	14.4	0.0	0.028	13.5	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
AAA_30	PF13604.1	gi|292656615|ref|YP_003536512.1|	-	0.017	14.7	0.5	0.088	12.3	0.1	2.0	1	1	1	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|292656615|ref|YP_003536512.1|	-	0.018	14.5	0.1	0.048	13.1	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.9	gi|292656615|ref|YP_003536512.1|	-	0.019	14.6	0.0	0.032	13.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Cytidylate_kin	PF02224.13	gi|292656615|ref|YP_003536512.1|	-	0.035	13.5	0.1	0.054	12.9	0.1	1.4	1	1	0	1	1	1	0	Cytidylate	kinase
RNA_helicase	PF00910.17	gi|292656615|ref|YP_003536512.1|	-	0.041	14.0	0.0	0.072	13.2	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
CbiA	PF01656.18	gi|292656615|ref|YP_003536512.1|	-	0.044	13.1	0.2	0.082	12.3	0.2	1.7	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_10	PF12846.2	gi|292656615|ref|YP_003536512.1|	-	0.044	13.2	0.1	0.085	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA-like	domain
CPT	PF07931.7	gi|292656615|ref|YP_003536512.1|	-	0.054	13.1	0.2	4.1	6.9	0.0	2.2	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
ABC_tran	PF00005.22	gi|292656615|ref|YP_003536512.1|	-	0.079	13.2	0.0	0.097	12.9	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
SRP54	PF00448.17	gi|292656615|ref|YP_003536512.1|	-	0.085	12.2	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.12	gi|292656615|ref|YP_003536512.1|	-	0.15	11.6	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
T2SE	PF00437.15	gi|292656615|ref|YP_003536512.1|	-	0.15	10.9	0.1	0.22	10.3	0.1	1.5	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF106	PF01956.11	gi|292656616|ref|YP_003536513.1|	-	3.2e-46	156.9	1.2	4e-46	156.6	0.8	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	DUF106
60KD_IMP	PF02096.15	gi|292656616|ref|YP_003536513.1|	-	5.2e-06	26.2	0.5	8.6e-06	25.5	0.4	1.4	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
THDPS_N_2	PF14805.1	gi|292656616|ref|YP_003536513.1|	-	0.11	12.3	0.3	0.27	11.1	0.2	1.6	1	0	0	1	1	1	0	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Vma12	PF11712.3	gi|292656616|ref|YP_003536513.1|	-	0.12	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
ADK	PF00406.17	gi|292656617|ref|YP_003536514.1|	-	4.7e-45	153.1	0.0	5.6e-45	152.8	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
ADK_lid	PF05191.9	gi|292656617|ref|YP_003536514.1|	-	5.7e-17	61.0	3.8	9.3e-17	60.4	2.6	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_17	PF13207.1	gi|292656617|ref|YP_003536514.1|	-	4.9e-11	43.5	0.1	7e-11	42.9	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|292656617|ref|YP_003536514.1|	-	4.1e-07	29.9	0.0	7.6e-07	29.0	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292656617|ref|YP_003536514.1|	-	2e-06	28.1	0.0	4.4e-06	27.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
zf-IS66	PF13005.2	gi|292656617|ref|YP_003536514.1|	-	0.00082	19.3	3.8	0.0092	15.9	0.9	2.5	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
HypA	PF01155.14	gi|292656617|ref|YP_003536514.1|	-	0.0042	16.7	0.1	0.006	16.2	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
AAA_28	PF13521.1	gi|292656617|ref|YP_003536514.1|	-	0.0047	16.8	0.5	0.007	16.3	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
DZR	PF12773.2	gi|292656617|ref|YP_003536514.1|	-	0.0064	16.2	0.4	0.01	15.6	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
GFA	PF04828.9	gi|292656617|ref|YP_003536514.1|	-	0.0074	16.2	0.2	0.41	10.6	0.2	2.3	1	1	0	1	1	1	1	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.5	gi|292656617|ref|YP_003536514.1|	-	0.0097	15.8	1.8	0.0097	15.8	1.2	2.0	2	0	0	2	2	2	1	Zinc	ribbon	domain
Thymidylate_kin	PF02223.12	gi|292656617|ref|YP_003536514.1|	-	0.012	15.0	0.7	19	4.5	0.0	3.0	3	0	0	3	3	3	0	Thymidylate	kinase
SKI	PF01202.17	gi|292656617|ref|YP_003536514.1|	-	0.019	14.8	0.4	0.052	13.4	0.1	1.9	2	1	0	2	2	2	0	Shikimate	kinase
A2L_zn_ribbon	PF08792.5	gi|292656617|ref|YP_003536514.1|	-	0.028	13.8	1.6	2.7	7.5	0.2	2.4	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|292656617|ref|YP_003536514.1|	-	0.032	13.7	0.3	0.82	9.2	0.0	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
RuvB_N	PF05496.7	gi|292656617|ref|YP_003536514.1|	-	0.045	12.8	0.1	0.068	12.2	0.1	1.4	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
SRP54	PF00448.17	gi|292656617|ref|YP_003536514.1|	-	0.05	13.0	0.1	0.12	11.7	0.0	1.6	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
PAS_7	PF12860.2	gi|292656617|ref|YP_003536514.1|	-	0.065	13.2	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	PAS	fold
DUF3039	PF11238.3	gi|292656617|ref|YP_003536514.1|	-	0.095	12.1	0.1	0.22	11.0	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3039)
Zeta_toxin	PF06414.7	gi|292656617|ref|YP_003536514.1|	-	0.1	11.6	0.1	0.16	11.0	0.1	1.6	1	1	0	1	1	1	0	Zeta	toxin
Prok-RING_1	PF14446.1	gi|292656617|ref|YP_003536514.1|	-	0.16	11.7	2.4	5.5	6.8	0.0	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
TF_Zn_Ribbon	PF08271.7	gi|292656617|ref|YP_003536514.1|	-	0.2	10.9	4.4	0.48	9.7	3.1	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF1272	PF06906.6	gi|292656617|ref|YP_003536514.1|	-	0.27	11.1	1.4	1.4	8.8	1.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Nudix_N_2	PF14803.1	gi|292656617|ref|YP_003536514.1|	-	1.1	9.0	4.8	7.9	6.2	0.4	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Cons_hypoth698	PF03601.9	gi|292656618|ref|YP_003536515.1|	-	5.7e-55	186.0	20.9	7.3e-55	185.7	14.5	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	698
Usp	PF00582.21	gi|292656620|ref|YP_003536517.1|	-	4.2e-13	49.6	0.8	4.9e-13	49.4	0.6	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
TIR_2	PF13676.1	gi|292656620|ref|YP_003536517.1|	-	0.1	12.7	0.1	0.17	12.0	0.1	1.3	1	0	0	1	1	1	0	TIR	domain
PIG-L	PF02585.12	gi|292656620|ref|YP_003536517.1|	-	0.12	12.8	0.5	0.15	12.5	0.3	1.3	1	1	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
AA_permease_2	PF13520.1	gi|292656621|ref|YP_003536518.1|	-	4.2e-46	157.3	44.7	5.3e-46	157.0	31.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|292656621|ref|YP_003536518.1|	-	1.6e-38	132.2	39.6	2.3e-38	131.7	27.5	1.2	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|292656621|ref|YP_003536518.1|	-	2.9e-21	76.1	10.1	8.9e-12	45.3	0.2	3.1	2	1	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.1	gi|292656621|ref|YP_003536518.1|	-	0.057	13.2	8.3	0.018	14.8	3.1	2.3	2	0	0	2	2	2	0	C-terminus	of	AA_permease
Trp_Tyr_perm	PF03222.8	gi|292656621|ref|YP_003536518.1|	-	0.16	10.7	25.3	0.087	11.6	15.9	1.7	2	0	0	2	2	2	0	Tryptophan/tyrosine	permease	family
2TM	PF13239.1	gi|292656621|ref|YP_003536518.1|	-	6.8	6.8	6.2	1.6	8.8	0.5	2.7	2	0	0	2	2	2	0	2TM	domain
Abhydrolase_6	PF12697.2	gi|292656622|ref|YP_003536519.1|	-	4.7e-39	134.6	15.5	5.9e-39	134.2	10.8	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292656622|ref|YP_003536519.1|	-	1e-26	93.8	0.3	2.7e-25	89.2	0.2	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|292656622|ref|YP_003536519.1|	-	1.6e-20	73.3	0.0	5.8e-20	71.5	0.0	1.8	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.3	gi|292656622|ref|YP_003536519.1|	-	8.4e-07	28.7	0.2	3.8e-06	26.6	0.0	2.1	1	1	1	2	2	2	1	Putative	lysophospholipase
Esterase	PF00756.15	gi|292656622|ref|YP_003536519.1|	-	0.0068	15.8	0.0	0.014	14.7	0.0	1.6	1	1	0	1	1	1	1	Putative	esterase
Ndr	PF03096.9	gi|292656622|ref|YP_003536519.1|	-	0.041	12.3	0.0	0.075	11.4	0.0	1.3	1	0	0	1	1	1	0	Ndr	family
DLH	PF01738.13	gi|292656622|ref|YP_003536519.1|	-	0.072	12.3	0.0	4.1	6.6	0.0	2.6	3	0	0	3	3	3	0	Dienelactone	hydrolase	family
AIRS_C	PF02769.17	gi|292656623|ref|YP_003536520.1|	-	1.2e-19	70.8	0.9	1.8e-19	70.2	0.6	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|292656623|ref|YP_003536520.1|	-	2.4e-05	24.5	2.3	5.4e-05	23.3	0.0	2.6	3	0	0	3	3	3	1	AIR	synthase	related	protein,	N-terminal	domain
Aminotran_5	PF00266.14	gi|292656624|ref|YP_003536521.1|	-	3.9e-25	88.3	0.0	4.5e-25	88.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|292656624|ref|YP_003536521.1|	-	0.0052	15.7	0.0	0.008	15.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|292656624|ref|YP_003536521.1|	-	0.0073	14.6	0.0	0.0099	14.1	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
adh_short	PF00106.20	gi|292656625|ref|YP_003536522.1|	-	3.9e-23	82.1	0.2	7e-23	81.3	0.1	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292656625|ref|YP_003536522.1|	-	5.1e-10	39.5	0.0	6.9e-10	39.0	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_10	PF13460.1	gi|292656625|ref|YP_003536522.1|	-	7.5e-09	35.8	0.9	1.3e-08	35.0	0.6	1.3	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|292656625|ref|YP_003536522.1|	-	1.7e-07	30.9	0.0	2.1e-07	30.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.5	gi|292656625|ref|YP_003536522.1|	-	2.2e-05	24.1	0.0	0.0001	22.0	0.0	1.8	1	1	0	1	1	1	1	KR	domain
RmlD_sub_bind	PF04321.12	gi|292656625|ref|YP_003536522.1|	-	0.12	11.2	0.1	0.15	10.8	0.1	1.1	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Prok-JAB	PF14464.1	gi|292656626|ref|YP_003536523.1|	-	1.6e-17	62.9	0.9	2.1e-17	62.6	0.6	1.1	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|292656626|ref|YP_003536523.1|	-	1.2e-08	34.6	0.0	1.8e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
DUF4329	PF14220.1	gi|292656626|ref|YP_003536523.1|	-	0.023	14.6	0.0	0.049	13.5	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4329)
NUDIX	PF00293.23	gi|292656627|ref|YP_003536524.1|	-	4.7e-10	39.2	1.1	5.8e-10	38.9	0.7	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|292656627|ref|YP_003536524.1|	-	0.0018	17.7	0.3	0.0034	16.7	0.2	1.6	1	1	0	1	1	1	1	NUDIX	domain
Sigma70_r3	PF04539.11	gi|292656627|ref|YP_003536524.1|	-	0.1	12.5	2.8	0.8	9.6	0.2	2.7	3	0	0	3	3	3	0	Sigma-70	region	3
HTH_AsnC-type	PF13404.1	gi|292656628|ref|YP_003536525.1|	-	1.1e-17	63.2	1.4	1.8e-17	62.5	1.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656628|ref|YP_003536525.1|	-	4.4e-17	61.2	0.1	7.1e-17	60.5	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|292656628|ref|YP_003536525.1|	-	3.8e-10	39.3	1.3	3.8e-10	39.3	0.9	1.6	2	0	0	2	2	2	1	AsnC	family
MarR_2	PF12802.2	gi|292656628|ref|YP_003536525.1|	-	1.6e-06	27.6	0.5	2.8e-06	26.9	0.1	1.6	2	0	0	2	2	1	1	MarR	family
HTH_IclR	PF09339.5	gi|292656628|ref|YP_003536525.1|	-	3.2e-06	26.6	0.0	6e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292656628|ref|YP_003536525.1|	-	6.6e-06	25.8	0.1	1.1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|292656628|ref|YP_003536525.1|	-	0.00012	21.6	0.1	0.00047	19.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.1	gi|292656628|ref|YP_003536525.1|	-	0.00027	20.4	0.0	0.00044	19.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|292656628|ref|YP_003536525.1|	-	0.00042	19.7	0.1	0.0018	17.6	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
GntR	PF00392.16	gi|292656628|ref|YP_003536525.1|	-	0.0017	17.7	0.3	0.0028	17.0	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.7	gi|292656628|ref|YP_003536525.1|	-	0.002	17.7	0.1	0.004	16.7	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.7	gi|292656628|ref|YP_003536525.1|	-	0.0027	17.2	0.2	0.0058	16.1	0.2	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|292656628|ref|YP_003536525.1|	-	0.003	16.6	0.1	0.0065	15.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_29	PF13551.1	gi|292656628|ref|YP_003536525.1|	-	0.003	17.6	0.1	0.0061	16.6	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
PaaX	PF07848.7	gi|292656628|ref|YP_003536525.1|	-	0.0038	17.2	0.2	0.007	16.3	0.1	1.5	1	1	0	1	1	1	1	PaaX-like	protein
TrmB	PF01978.14	gi|292656628|ref|YP_003536525.1|	-	0.0049	16.5	0.1	0.01	15.5	0.1	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|292656628|ref|YP_003536525.1|	-	0.0062	16.8	0.3	0.015	15.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|292656628|ref|YP_003536525.1|	-	0.0074	15.9	0.0	0.015	14.9	0.0	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.14	gi|292656628|ref|YP_003536525.1|	-	0.0094	15.2	0.1	0.021	14.1	0.0	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	luxR	family
KorB	PF08535.5	gi|292656628|ref|YP_003536525.1|	-	0.011	15.9	0.2	1.4	9.1	0.0	2.1	1	1	1	2	2	2	0	KorB	domain
HrcA_DNA-bdg	PF03444.10	gi|292656628|ref|YP_003536525.1|	-	0.016	14.6	0.0	0.043	13.2	0.0	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
GYD	PF08734.6	gi|292656628|ref|YP_003536525.1|	-	0.02	14.6	0.7	0.07	12.8	0.1	2.1	1	1	0	2	2	2	0	GYD	domain
NapD	PF03927.8	gi|292656628|ref|YP_003536525.1|	-	0.025	14.4	0.5	0.067	13.0	0.2	1.8	2	0	0	2	2	2	0	NapD	protein
HTH_28	PF13518.1	gi|292656628|ref|YP_003536525.1|	-	0.026	14.5	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|292656628|ref|YP_003536525.1|	-	0.035	13.4	0.2	0.064	12.5	0.2	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
RP-C	PF03428.8	gi|292656628|ref|YP_003536525.1|	-	0.041	13.3	0.1	0.091	12.2	0.0	1.7	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
Stk19	PF10494.4	gi|292656628|ref|YP_003536525.1|	-	0.071	12.5	0.1	0.071	12.5	0.1	1.1	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
HTH_Crp_2	PF13545.1	gi|292656628|ref|YP_003536525.1|	-	0.076	12.8	0.1	0.14	11.9	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
RPA_C	PF08784.6	gi|292656628|ref|YP_003536525.1|	-	0.085	13.2	0.0	0.17	12.3	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_38	PF13936.1	gi|292656628|ref|YP_003536525.1|	-	0.091	12.3	0.3	0.2	11.2	0.2	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF746	PF05344.6	gi|292656628|ref|YP_003536525.1|	-	0.13	11.7	0.2	2	8.0	0.0	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
CPSase_sm_chain	PF00988.17	gi|292656629|ref|YP_003536526.1|	-	4.5e-37	126.4	0.0	1.1e-35	122.0	0.0	2.4	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|292656629|ref|YP_003536526.1|	-	1.2e-34	119.4	0.0	1.7e-34	118.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292656629|ref|YP_003536526.1|	-	7.1e-09	35.4	0.3	1.8e-06	27.6	0.1	2.8	1	1	1	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|292656629|ref|YP_003536526.1|	-	0.00021	20.7	0.1	0.00052	19.4	0.1	1.6	1	0	0	1	1	1	1	DJ-1/PfpI	family
Pro-kuma_activ	PF09286.6	gi|292656629|ref|YP_003536526.1|	-	0.1	12.6	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Pro-kumamolisin,	activation	domain
PAS_4	PF08448.5	gi|292656630|ref|YP_003536527.1|	-	1.6e-05	24.9	0.2	4.2e-05	23.5	0.1	1.8	1	0	0	1	1	1	1	PAS	fold
ACC_epsilon	PF13822.1	gi|292656630|ref|YP_003536527.1|	-	0.1	12.9	8.3	0.76	10.1	0.2	2.9	2	0	0	2	2	2	0	Acyl-CoA	carboxylase	epsilon	subunit
Acetyltransf_1	PF00583.19	gi|292656631|ref|YP_003536528.1|	-	2e-12	46.9	0.0	4.7e-12	45.7	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|292656631|ref|YP_003536528.1|	-	1.2e-08	35.1	0.2	2.7e-08	34.0	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656631|ref|YP_003536528.1|	-	0.00069	19.7	5.4	0.045	13.8	0.5	2.8	2	2	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656631|ref|YP_003536528.1|	-	0.00073	19.3	0.1	0.0041	16.9	0.1	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656631|ref|YP_003536528.1|	-	0.0011	18.8	0.1	0.0024	17.7	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.1	gi|292656631|ref|YP_003536528.1|	-	0.019	14.8	0.1	0.051	13.4	0.0	1.8	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|292656631|ref|YP_003536528.1|	-	0.026	14.4	0.7	0.026	14.4	0.5	2.3	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656631|ref|YP_003536528.1|	-	0.064	13.0	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
Asparaginase	PF00710.15	gi|292656632|ref|YP_003536529.1|	-	8.8e-85	284.3	0.7	1e-84	284.0	0.5	1.0	1	0	0	1	1	1	1	Asparaginase
PLDc_N	PF13396.1	gi|292656633|ref|YP_003536530.1|	-	1.6e-06	27.6	12.4	3.4e-06	26.5	7.0	2.0	1	1	1	2	2	2	1	Phospholipase_D-nuclease	N-terminal
FixQ	PF05545.6	gi|292656633|ref|YP_003536530.1|	-	0.0012	18.4	1.0	0.0012	18.4	0.7	2.2	1	1	1	2	2	2	1	Cbb3-type	cytochrome	oxidase	component	FixQ
BCD	PF15461.1	gi|292656633|ref|YP_003536530.1|	-	0.031	13.7	4.9	0.037	13.4	3.4	1.0	1	0	0	1	1	1	0	Beta-carotene	15,15'-dioxygenase
DUF2976	PF11190.3	gi|292656633|ref|YP_003536530.1|	-	0.04	13.4	1.0	0.046	13.2	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2976)
DUF4153	PF13687.1	gi|292656633|ref|YP_003536530.1|	-	0.043	13.3	4.0	0.047	13.2	2.8	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4153)
Glucos_trans_II	PF14264.1	gi|292656633|ref|YP_003536530.1|	-	0.062	12.2	3.1	0.065	12.2	2.2	1.0	1	0	0	1	1	1	0	Glucosyl	transferase	GtrII
DUF4131	PF13567.1	gi|292656633|ref|YP_003536530.1|	-	0.063	12.6	0.6	0.063	12.6	0.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
TraS	PF10624.4	gi|292656633|ref|YP_003536530.1|	-	0.095	12.2	2.8	0.28	10.7	2.0	1.7	1	1	0	1	1	1	0	Plasmid	conjugative	transfer	entry	exclusion	protein	TraS
Bax1-I	PF01027.15	gi|292656633|ref|YP_003536530.1|	-	0.1	12.1	4.7	0.11	12.0	3.2	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
Tad	PF13400.1	gi|292656633|ref|YP_003536530.1|	-	0.13	12.2	0.4	0.13	12.2	0.3	2.1	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
Yip1	PF04893.12	gi|292656633|ref|YP_003536530.1|	-	0.15	11.5	6.7	0.17	11.3	4.7	1.1	1	0	0	1	1	1	0	Yip1	domain
Herpes_LMP1	PF05297.6	gi|292656633|ref|YP_003536530.1|	-	0.32	9.8	1.4	0.25	10.2	0.2	1.4	1	1	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
AtpR	PF12966.2	gi|292656633|ref|YP_003536530.1|	-	0.35	11.0	6.4	0.4	10.8	4.4	1.1	1	0	0	1	1	1	0	N-ATPase,	AtpR	subunit
MARVEL	PF01284.18	gi|292656633|ref|YP_003536530.1|	-	0.35	10.6	3.9	0.43	10.3	2.7	1.1	1	0	0	1	1	1	0	Membrane-associating	domain
LAB_N	PF07578.6	gi|292656633|ref|YP_003536530.1|	-	0.43	10.5	3.2	0.6	10.0	2.2	1.3	1	1	0	1	1	1	0	Lipid	A	Biosynthesis	N-terminal	domain
Brevenin	PF03032.10	gi|292656633|ref|YP_003536530.1|	-	0.52	10.1	0.2	0.52	10.1	0.1	1.8	2	0	0	2	2	2	0	Brevenin/esculentin/gaegurin/rugosin	family
YjgP_YjgQ	PF03739.9	gi|292656633|ref|YP_003536530.1|	-	0.7	8.5	6.3	0.77	8.4	4.4	1.0	1	0	0	1	1	1	0	Predicted	permease	YjgP/YjgQ	family
DUF2069	PF09842.4	gi|292656633|ref|YP_003536530.1|	-	0.95	9.4	5.1	1.2	9.1	3.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2069)
DUF1269	PF06897.7	gi|292656633|ref|YP_003536530.1|	-	1.4	8.9	4.4	0.98	9.4	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
CcmD	PF04995.9	gi|292656633|ref|YP_003536530.1|	-	1.7	8.4	5.8	3.5	7.4	0.0	2.4	2	1	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
DUF1469	PF07332.6	gi|292656633|ref|YP_003536530.1|	-	1.9	8.2	7.5	6.3	6.5	4.8	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
RseC_MucC	PF04246.7	gi|292656633|ref|YP_003536530.1|	-	5.9	6.4	7.8	7	6.2	1.4	2.0	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
HTH_5	PF01022.15	gi|292656635|ref|YP_003536532.1|	-	1.9e-22	78.6	0.5	5e-16	58.1	0.1	3.1	3	0	0	3	3	3	2	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656635|ref|YP_003536532.1|	-	2.4e-18	65.6	1.1	5.9e-14	51.6	0.1	3.0	3	0	0	3	3	3	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656635|ref|YP_003536532.1|	-	5.5e-15	54.7	1.0	4.6e-09	35.8	0.1	3.3	3	0	0	3	3	3	2	MarR	family
TrmB	PF01978.14	gi|292656635|ref|YP_003536532.1|	-	2.7e-12	46.1	0.0	1.2e-06	28.0	0.0	2.8	4	0	0	4	4	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|292656635|ref|YP_003536532.1|	-	1.4e-11	43.6	0.1	2.1e-09	36.5	0.0	2.9	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|292656635|ref|YP_003536532.1|	-	1.2e-10	40.9	0.1	1.2e-07	31.3	0.1	3.0	4	0	0	4	4	3	1	MarR	family
HTH_27	PF13463.1	gi|292656635|ref|YP_003536532.1|	-	1.5e-10	41.2	0.1	1.3e-05	25.4	0.0	2.5	2	1	0	2	2	2	2	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|292656635|ref|YP_003536532.1|	-	3.3e-09	36.5	0.0	0.00019	21.2	0.0	2.5	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|292656635|ref|YP_003536532.1|	-	1.5e-07	31.0	0.0	0.00072	19.2	0.0	2.7	2	1	0	2	2	2	2	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|292656635|ref|YP_003536532.1|	-	1.7e-07	31.2	0.0	0.002	18.2	0.0	2.3	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_23	PF13384.1	gi|292656635|ref|YP_003536532.1|	-	1.5e-06	27.6	0.0	0.0099	15.5	0.0	2.9	3	0	0	3	3	2	2	Homeodomain-like	domain
HTH_11	PF08279.7	gi|292656635|ref|YP_003536532.1|	-	2.8e-06	26.8	0.1	1.3e-05	24.7	0.0	2.2	3	0	0	3	3	1	1	HTH	domain
HTH_28	PF13518.1	gi|292656635|ref|YP_003536532.1|	-	8.4e-06	25.6	0.5	0.15	12.1	0.0	3.1	3	0	0	3	3	3	2	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|292656635|ref|YP_003536532.1|	-	1.8e-05	24.8	0.3	0.14	12.3	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn	helix
LexA_DNA_bind	PF01726.11	gi|292656635|ref|YP_003536532.1|	-	4.7e-05	22.8	0.0	0.014	14.9	0.0	2.7	2	0	0	2	2	2	1	LexA	DNA	binding	domain
IF2_N	PF04760.10	gi|292656635|ref|YP_003536532.1|	-	5.3e-05	22.7	0.0	1.1	8.9	0.0	3.9	3	1	0	3	3	3	1	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_IclR	PF09339.5	gi|292656635|ref|YP_003536532.1|	-	6.2e-05	22.5	0.7	0.55	9.8	0.0	3.2	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.6	gi|292656635|ref|YP_003536532.1|	-	6.5e-05	22.1	0.0	0.00022	20.5	0.0	1.9	2	0	0	2	2	1	1	CodY	helix-turn-helix	domain
PadR	PF03551.9	gi|292656635|ref|YP_003536532.1|	-	7.8e-05	22.3	0.1	0.003	17.2	0.0	3.2	3	1	0	3	3	3	1	Transcriptional	regulator	PadR-like	family
DUF4423	PF14394.1	gi|292656635|ref|YP_003536532.1|	-	0.0001	21.9	0.0	0.32	10.5	0.0	2.4	3	0	0	3	3	2	2	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.16	gi|292656635|ref|YP_003536532.1|	-	0.0003	20.1	0.0	0.63	9.5	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.4	gi|292656635|ref|YP_003536532.1|	-	0.00032	20.5	0.0	0.068	13.0	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.1	gi|292656635|ref|YP_003536532.1|	-	0.00061	19.5	0.0	1.2	9.0	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix
TFIIE_alpha	PF02002.12	gi|292656635|ref|YP_003536532.1|	-	0.00065	19.1	0.0	0.5	9.8	0.0	2.4	2	1	0	2	2	2	1	TFIIE	alpha	subunit
B-block_TFIIIC	PF04182.7	gi|292656635|ref|YP_003536532.1|	-	0.00068	19.4	0.0	0.078	12.8	0.0	2.2	2	0	0	2	2	2	1	B-block	binding	subunit	of	TFIIIC
ArsR	PF09824.4	gi|292656635|ref|YP_003536532.1|	-	0.00094	18.5	0.0	0.034	13.4	0.0	2.3	2	1	1	3	3	3	1	ArsR	transcriptional	regulator
HTH_10	PF04967.7	gi|292656635|ref|YP_003536532.1|	-	0.0016	17.9	0.0	0.0083	15.6	0.0	2.2	2	0	0	2	2	1	1	HTH	DNA	binding	domain
HTH_36	PF13730.1	gi|292656635|ref|YP_003536532.1|	-	0.0022	18.0	0.0	0.02	15.0	0.0	2.3	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|292656635|ref|YP_003536532.1|	-	0.0029	17.5	0.0	0.053	13.5	0.0	2.6	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.4	gi|292656635|ref|YP_003536532.1|	-	0.0037	17.3	0.0	0.019	15.0	0.0	1.9	2	0	0	2	2	2	1	Hypothetical	protein	(DUF2513)
Sulfolobus_pRN	PF05584.6	gi|292656635|ref|YP_003536532.1|	-	0.0039	17.1	0.0	0.13	12.2	0.0	2.4	2	0	0	2	2	2	1	Sulfolobus	plasmid	regulatory	protein
HTH_AsnC-type	PF13404.1	gi|292656635|ref|YP_003536532.1|	-	0.0045	16.5	1.4	0.35	10.4	0.0	3.9	3	1	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HemN_C	PF06969.11	gi|292656635|ref|YP_003536532.1|	-	0.0056	16.7	0.3	3	7.9	0.0	3.1	4	0	0	4	4	3	1	HemN	C-terminal	domain
HTH_Tnp_ISL3	PF13542.1	gi|292656635|ref|YP_003536532.1|	-	0.0058	15.7	0.0	1.6	7.9	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_38	PF13936.1	gi|292656635|ref|YP_003536532.1|	-	0.0071	15.8	0.0	6	6.5	0.0	3.3	4	0	0	4	4	3	0	Helix-turn-helix	domain
DDRGK	PF09756.4	gi|292656635|ref|YP_003536532.1|	-	0.0077	15.6	0.0	0.015	14.7	0.0	1.4	1	0	0	1	1	1	1	DDRGK	domain
HxlR	PF01638.12	gi|292656635|ref|YP_003536532.1|	-	0.015	14.8	0.0	0.082	12.5	0.0	2.1	2	0	0	2	2	2	0	HxlR-like	helix-turn-helix
FeoC	PF09012.5	gi|292656635|ref|YP_003536532.1|	-	0.015	14.9	0.0	4.9	6.9	0.0	2.7	3	0	0	3	3	2	0	FeoC	like	transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|292656635|ref|YP_003536532.1|	-	0.024	14.0	0.0	0.98	8.9	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF742	PF05331.6	gi|292656635|ref|YP_003536532.1|	-	0.025	14.1	0.0	1.7	8.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF742)
MerR	PF00376.18	gi|292656635|ref|YP_003536532.1|	-	0.036	13.6	0.0	0.52	9.9	0.1	2.8	2	1	0	2	2	1	0	MerR	family	regulatory	protein
HTH_DeoR	PF08220.7	gi|292656635|ref|YP_003536532.1|	-	0.051	13.1	0.0	0.14	11.7	0.0	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_17	PF12728.2	gi|292656635|ref|YP_003536532.1|	-	0.052	13.7	0.0	1	9.6	0.0	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
Cdc6_C	PF09079.6	gi|292656635|ref|YP_003536532.1|	-	0.059	13.1	0.1	0.64	9.7	0.0	2.6	3	1	1	4	4	2	0	CDC6,	C	terminal
GerE	PF00196.14	gi|292656635|ref|YP_003536532.1|	-	0.069	12.4	0.0	12	5.3	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
EAP30	PF04157.11	gi|292656635|ref|YP_003536532.1|	-	0.075	12.1	0.0	19	4.3	0.0	2.7	2	1	1	3	3	3	0	EAP30/Vps36	family
DUF2089	PF09862.4	gi|292656635|ref|YP_003536532.1|	-	0.11	12.2	0.0	0.59	9.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
FaeA	PF04703.7	gi|292656635|ref|YP_003536532.1|	-	0.13	12.4	0.0	0.3	11.2	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
DUF1405	PF07187.6	gi|292656636|ref|YP_003536533.1|	-	2e-38	131.7	9.5	2.7e-38	131.2	6.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
iPGM_N	PF06415.8	gi|292656637|ref|YP_003536534.1|	-	1.4e-77	260.0	0.0	1.8e-77	259.6	0.0	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.13	gi|292656637|ref|YP_003536534.1|	-	3.4e-70	236.3	0.0	5e-70	235.7	0.0	1.2	1	1	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.17	gi|292656637|ref|YP_003536534.1|	-	6.7e-08	32.2	0.2	1.5e-07	31.0	0.1	1.6	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|292656637|ref|YP_003536534.1|	-	0.0012	18.5	0.1	0.0027	17.3	0.1	1.6	1	0	0	1	1	1	1	PglZ	domain
Sulfatase	PF00884.18	gi|292656637|ref|YP_003536534.1|	-	0.0019	17.4	0.1	0.03	13.5	0.0	2.9	2	1	0	2	2	2	1	Sulfatase
SNARE_assoc	PF09335.6	gi|292656638|ref|YP_003536535.1|	-	4.4e-10	39.8	8.8	4.4e-10	39.8	6.1	2.2	2	1	1	3	3	3	1	SNARE	associated	Golgi	protein
DUF2688	PF10892.3	gi|292656639|ref|YP_003536536.1|	-	0.068	12.8	0.5	0.25	11.0	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2688)
bPH_3	PF14470.1	gi|292656640|ref|YP_003536537.1|	-	0.032	14.4	0.0	0.14	12.3	0.0	1.9	2	0	0	2	2	2	0	Bacterial	PH	domain
Neur_chan_memb	PF02932.11	gi|292656640|ref|YP_003536537.1|	-	0.081	12.8	0.1	0.13	12.1	0.1	1.3	1	0	0	1	1	1	0	Neurotransmitter-gated	ion-channel	transmembrane	region
DUF21	PF01595.15	gi|292656642|ref|YP_003536539.1|	-	1.2e-30	106.1	0.8	1.5e-30	105.8	0.6	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|292656642|ref|YP_003536539.1|	-	8.5e-13	47.8	0.0	3.1e-06	26.8	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
HTH_24	PF13412.1	gi|292656643|ref|YP_003536540.1|	-	4.2e-12	45.2	0.4	6.5e-12	44.6	0.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|292656643|ref|YP_003536540.1|	-	2.2e-10	39.9	4.9	5e-10	38.7	3.4	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656643|ref|YP_003536540.1|	-	3.5e-07	29.7	0.1	6.2e-07	28.9	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|292656643|ref|YP_003536540.1|	-	6.8e-06	25.6	0.5	2.6e-05	23.7	0.2	1.9	2	0	0	2	2	2	1	MarR	family
Fe_dep_repress	PF01325.14	gi|292656643|ref|YP_003536540.1|	-	2.3e-05	24.2	0.0	7.7e-05	22.5	0.0	1.8	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.1	gi|292656643|ref|YP_003536540.1|	-	0.00024	21.3	0.1	0.00048	20.3	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|292656643|ref|YP_003536540.1|	-	0.00059	19.3	0.2	0.0014	18.1	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292656643|ref|YP_003536540.1|	-	0.001	18.8	0.2	0.0019	17.9	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|292656643|ref|YP_003536540.1|	-	0.0016	18.0	0.0	0.004	16.8	0.0	1.6	1	0	0	1	1	1	1	AsnC	family
HrcA_DNA-bdg	PF03444.10	gi|292656643|ref|YP_003536540.1|	-	0.0033	16.8	0.0	0.0064	15.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_DeoR	PF08220.7	gi|292656643|ref|YP_003536540.1|	-	0.0055	16.2	0.2	0.011	15.2	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GntR	PF00392.16	gi|292656643|ref|YP_003536540.1|	-	0.0075	15.6	0.5	0.03	13.7	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Put_DNA-bind_N	PF06971.8	gi|292656643|ref|YP_003536540.1|	-	0.0096	15.6	0.2	0.024	14.3	0.2	1.6	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
Sigma70_r4_2	PF08281.7	gi|292656643|ref|YP_003536540.1|	-	0.016	14.6	0.1	0.031	13.7	0.1	1.6	1	1	0	1	1	1	0	Sigma-70,	region	4
MarR	PF01047.17	gi|292656643|ref|YP_003536540.1|	-	0.028	14.1	0.0	0.047	13.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
GerE	PF00196.14	gi|292656643|ref|YP_003536540.1|	-	0.032	13.5	0.0	0.055	12.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_10	PF04967.7	gi|292656643|ref|YP_003536540.1|	-	0.038	13.5	0.2	0.083	12.4	0.1	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rrf2	PF02082.15	gi|292656643|ref|YP_003536540.1|	-	0.041	13.9	0.0	0.078	13.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
PaaX	PF07848.7	gi|292656643|ref|YP_003536540.1|	-	0.046	13.7	0.1	0.097	12.6	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
HTH_23	PF13384.1	gi|292656643|ref|YP_003536540.1|	-	0.046	13.3	0.2	0.11	12.2	0.1	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.1	gi|292656643|ref|YP_003536540.1|	-	0.065	12.7	0.9	0.13	11.8	0.6	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|292656643|ref|YP_003536540.1|	-	0.079	12.4	0.0	8.8	5.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_1	PF00126.22	gi|292656643|ref|YP_003536540.1|	-	0.11	12.2	0.3	0.21	11.3	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|292656643|ref|YP_003536540.1|	-	0.12	12.0	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_Tc3_2	PF01498.13	gi|292656643|ref|YP_003536540.1|	-	0.14	12.2	0.2	0.28	11.2	0.2	1.5	1	0	0	1	1	1	0	Transposase
zf-Mss51	PF13824.1	gi|292656644|ref|YP_003536541.1|	-	0.057	13.2	6.8	0.1	12.4	4.7	1.5	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-tcix	PF14952.1	gi|292656644|ref|YP_003536541.1|	-	0.22	10.8	1.4	0.36	10.2	0.8	1.6	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
TF_Zn_Ribbon	PF08271.7	gi|292656644|ref|YP_003536541.1|	-	0.23	10.8	4.9	0.46	9.8	3.4	1.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-C2HC5	PF06221.8	gi|292656644|ref|YP_003536541.1|	-	1	9.1	5.1	1.8	8.3	2.8	1.8	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
A2L_zn_ribbon	PF08792.5	gi|292656644|ref|YP_003536541.1|	-	1.4	8.4	6.1	4.4	6.8	0.2	2.3	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656644|ref|YP_003536541.1|	-	1.7	8.5	5.9	3.2	7.6	4.1	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF1610	PF07754.6	gi|292656644|ref|YP_003536541.1|	-	2.3	8.3	10.7	0.91	9.7	1.0	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
SQS_PSY	PF00494.14	gi|292656645|ref|YP_003536542.1|	-	1.6e-64	217.7	8.2	2.1e-64	217.4	5.7	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
PIN	PF01850.16	gi|292656645|ref|YP_003536542.1|	-	0.083	13.2	0.2	0.21	11.9	0.1	1.7	1	1	0	1	1	1	0	PIN	domain
HTH_10	PF04967.7	gi|292656646|ref|YP_003536543.1|	-	4.4e-06	26.1	0.0	1.3e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
DUF422	PF04240.7	gi|292656647|ref|YP_003536544.1|	-	3e-70	235.9	17.7	3.8e-70	235.6	12.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF422)
UbiA	PF01040.13	gi|292656648|ref|YP_003536545.1|	-	1.1e-30	106.7	23.9	1.4e-30	106.3	16.6	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF2955	PF11168.3	gi|292656648|ref|YP_003536545.1|	-	0.017	14.7	6.0	0.69	9.5	0.7	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2955)
Amino_oxidase	PF01593.19	gi|292656649|ref|YP_003536546.1|	-	2.3e-29	102.7	0.1	9.5e-29	100.7	0.0	1.8	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
DAO	PF01266.19	gi|292656649|ref|YP_003536546.1|	-	3.3e-18	65.7	0.0	4.9e-09	35.5	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|292656649|ref|YP_003536546.1|	-	5.3e-18	64.8	0.1	1.6e-17	63.2	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|292656649|ref|YP_003536546.1|	-	2.4e-09	37.4	0.2	1.3e-06	28.6	0.1	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292656649|ref|YP_003536546.1|	-	7.5e-08	32.6	0.0	0.00092	19.3	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292656649|ref|YP_003536546.1|	-	1.7e-07	30.0	0.0	0.00059	18.4	0.2	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|292656649|ref|YP_003536546.1|	-	6.2e-07	28.6	1.2	2.2e-06	26.7	0.6	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|292656649|ref|YP_003536546.1|	-	2.6e-06	27.4	0.0	2.1e-05	24.5	0.1	2.1	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|292656649|ref|YP_003536546.1|	-	9.4e-06	24.9	0.0	1.4e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|292656649|ref|YP_003536546.1|	-	5.4e-05	22.4	0.2	8.3e-05	21.7	0.2	1.2	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.14	gi|292656649|ref|YP_003536546.1|	-	5.8e-05	22.2	0.1	8.6e-05	21.7	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|292656649|ref|YP_003536546.1|	-	0.00044	20.0	0.1	1.1	8.9	0.0	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|292656649|ref|YP_003536546.1|	-	0.0024	16.8	0.6	0.0035	16.2	0.4	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|292656649|ref|YP_003536546.1|	-	0.012	15.8	0.0	0.023	14.9	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Strep_67kDa_ant	PF06100.6	gi|292656649|ref|YP_003536546.1|	-	0.029	12.7	0.0	0.039	12.3	0.0	1.2	1	0	0	1	1	1	0	Streptococcal	67	kDa	myosin-cross-reactive	antigen	like	family
3HCDH_N	PF02737.13	gi|292656649|ref|YP_003536546.1|	-	0.057	13.0	0.1	0.088	12.4	0.1	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.9	gi|292656649|ref|YP_003536546.1|	-	0.057	12.0	0.3	0.085	11.4	0.2	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
UDPG_MGDP_dh_N	PF03721.9	gi|292656649|ref|YP_003536546.1|	-	0.096	12.0	0.2	0.15	11.3	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
adh_short	PF00106.20	gi|292656650|ref|YP_003536547.1|	-	3.3e-27	95.4	8.3	4.6e-27	94.9	5.8	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292656650|ref|YP_003536547.1|	-	2.2e-20	73.4	0.0	2.8e-20	73.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|292656650|ref|YP_003536547.1|	-	7.6e-13	48.5	5.6	1e-12	48.0	3.9	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|292656650|ref|YP_003536547.1|	-	2.9e-07	30.1	2.7	3.3e-06	26.7	0.5	2.6	1	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|292656650|ref|YP_003536547.1|	-	4.7e-06	26.7	6.1	9.8e-06	25.6	4.1	1.6	1	1	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|292656650|ref|YP_003536547.1|	-	4.8e-05	22.4	0.0	0.00025	20.0	0.0	2.2	1	1	1	2	2	2	1	Male	sterility	protein
Eno-Rase_NADH_b	PF12242.3	gi|292656650|ref|YP_003536547.1|	-	0.0085	15.8	2.2	0.027	14.2	1.5	1.8	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DFP	PF04127.10	gi|292656650|ref|YP_003536547.1|	-	0.0091	15.6	2.4	0.016	14.8	1.6	1.3	1	0	0	1	1	1	1	DNA	/	pantothenate	metabolism	flavoprotein
THF_DHG_CYH_C	PF02882.14	gi|292656650|ref|YP_003536547.1|	-	0.0098	14.9	0.1	0.017	14.2	0.1	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
HEM4	PF02602.10	gi|292656650|ref|YP_003536547.1|	-	0.18	10.9	4.3	2.1	7.5	2.9	2.4	1	1	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
NmrA	PF05368.8	gi|292656650|ref|YP_003536547.1|	-	0.23	10.6	0.7	0.38	9.9	0.5	1.3	1	0	0	1	1	1	0	NmrA-like	family
Saccharop_dh	PF03435.13	gi|292656650|ref|YP_003536547.1|	-	0.59	9.0	2.4	1.6	7.6	0.7	2.1	1	1	2	3	3	3	0	Saccharopine	dehydrogenase
HHH_5	PF14520.1	gi|292656650|ref|YP_003536547.1|	-	0.63	10.2	3.4	5.9	7.1	2.3	2.5	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Zip	PF02535.17	gi|292656651|ref|YP_003536548.1|	-	0.0017	17.4	7.2	0.0017	17.4	5.0	2.3	2	1	0	2	2	2	1	ZIP	Zinc	transporter
DUF2956	PF11169.3	gi|292656651|ref|YP_003536548.1|	-	0.24	11.3	0.4	0.37	10.7	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2956)
GARS_A	PF01071.14	gi|292656652|ref|YP_003536549.1|	-	1.1e-12	47.9	0.0	2.7e-12	46.6	0.0	1.7	2	1	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.11	gi|292656652|ref|YP_003536549.1|	-	1e-09	38.3	0.1	3e-09	36.9	0.0	1.8	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|292656652|ref|YP_003536549.1|	-	2e-07	30.9	0.0	3.6e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Glyco_transf_28	PF03033.15	gi|292656652|ref|YP_003536549.1|	-	0.0009	19.0	0.2	0.19	11.4	0.0	2.4	2	0	0	2	2	2	2	Glycosyltransferase	family	28	N-terminal	domain
ATP-grasp_5	PF13549.1	gi|292656652|ref|YP_003536549.1|	-	0.025	13.7	0.0	0.074	12.2	0.0	1.8	1	1	0	1	1	1	0	ATP-grasp	domain
Glyco_trans_4_4	PF13579.1	gi|292656652|ref|YP_003536549.1|	-	0.031	14.3	0.8	2.1	8.4	0.1	3.1	3	0	0	3	3	3	0	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|292656652|ref|YP_003536549.1|	-	0.052	13.2	0.7	0.3	10.7	0.1	2.3	2	1	1	3	3	3	0	Glycosyltransferase	Family	4
DUF1980	PF09323.5	gi|292656653|ref|YP_003536550.1|	-	0.0088	15.7	0.2	0.0088	15.7	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1980)
TrbL	PF04610.9	gi|292656653|ref|YP_003536550.1|	-	0.0092	15.7	0.2	0.011	15.4	0.1	1.1	1	0	0	1	1	1	1	TrbL/VirB6	plasmid	conjugal	transfer	protein
CARDB	PF07705.6	gi|292656654|ref|YP_003536551.1|	-	1.4e-05	25.0	2.5	0.0046	16.9	0.0	2.6	2	1	0	2	2	2	2	CARDB
GPI-anchored	PF10342.4	gi|292656654|ref|YP_003536551.1|	-	0.011	16.1	1.6	0.82	10.1	0.0	2.7	2	2	0	2	2	2	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
Usp	PF00582.21	gi|292656655|ref|YP_003536552.1|	-	2.9e-13	50.2	0.4	3.7e-13	49.8	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2635	PF10948.3	gi|292656655|ref|YP_003536552.1|	-	0.077	12.3	0.1	0.21	10.9	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2635)
DUF4349	PF14257.1	gi|292656656|ref|YP_003536553.1|	-	0.14	11.3	2.2	0.19	10.9	1.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Saccharop_dh_N	PF04455.7	gi|292656657|ref|YP_003536554.1|	-	1.9e-37	127.4	0.0	3.5e-37	126.6	0.0	1.4	1	0	0	1	1	1	1	LOR/SDH	bifunctional	enzyme	conserved	region
TPP_enzyme_M	PF00205.17	gi|292656657|ref|YP_003536554.1|	-	0.0001	22.1	0.1	0.023	14.4	0.0	2.7	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	central	domain
AA_kinase	PF00696.23	gi|292656657|ref|YP_003536554.1|	-	0.05	13.1	0.1	0.091	12.2	0.1	1.4	1	0	0	1	1	1	0	Amino	acid	kinase	family
Anophelin	PF10731.4	gi|292656658|ref|YP_003536555.1|	-	0.011	15.7	0.1	0.021	14.9	0.1	1.5	1	0	0	1	1	1	0	Thrombin	inhibitor	from	mosquito
Abhydrolase_6	PF12697.2	gi|292656659|ref|YP_003536556.1|	-	1.4e-25	90.5	10.8	1.9e-25	90.0	7.5	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|292656659|ref|YP_003536556.1|	-	1.5e-19	70.1	0.1	8.1e-19	67.8	0.1	1.9	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292656659|ref|YP_003536556.1|	-	6.6e-07	29.1	1.7	9.4e-06	25.3	0.9	2.5	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
DLH	PF01738.13	gi|292656659|ref|YP_003536556.1|	-	6.8e-06	25.5	0.1	0.001	18.4	0.0	2.2	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.13	gi|292656659|ref|YP_003536556.1|	-	0.00011	21.7	0.0	0.00054	19.4	0.0	1.9	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
FSH1	PF03959.8	gi|292656659|ref|YP_003536556.1|	-	0.0017	17.8	0.0	0.0024	17.3	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Peptidase_S9	PF00326.16	gi|292656659|ref|YP_003536556.1|	-	0.0093	15.2	0.1	1.3	8.2	0.0	2.1	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.3	gi|292656659|ref|YP_003536556.1|	-	0.011	15.6	0.0	0.028	14.2	0.0	1.7	1	0	0	1	1	1	0	Putative	lysophospholipase
Abhydrolase_4	PF08386.5	gi|292656659|ref|YP_003536556.1|	-	0.023	14.6	0.0	0.063	13.1	0.0	1.7	2	0	0	2	2	2	0	TAP-like	protein
AXE1	PF05448.7	gi|292656659|ref|YP_003536556.1|	-	0.038	12.4	0.1	0.13	10.7	0.0	1.9	1	1	1	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
PhoPQ_related	PF10142.4	gi|292656659|ref|YP_003536556.1|	-	0.11	10.9	0.0	0.46	8.9	0.0	1.8	2	0	0	2	2	2	0	PhoPQ-activated	pathogenicity-related	protein
Creatinase_N	PF01321.13	gi|292656661|ref|YP_003536558.1|	-	0.082	13.3	0.0	0.15	12.5	0.0	1.6	1	1	0	1	1	1	0	Creatinase/Prolidase	N-terminal	domain
SecY	PF00344.15	gi|292656662|ref|YP_003536559.1|	-	7.6e-94	314.4	20.5	9.1e-94	314.2	14.2	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|292656662|ref|YP_003536559.1|	-	1.7e-11	43.4	0.6	1.7e-11	43.4	0.4	2.3	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
Ribosomal_L18e	PF00828.14	gi|292656663|ref|YP_003536560.1|	-	8.3e-27	94.1	0.3	8.3e-27	94.1	0.2	1.7	1	1	1	2	2	2	1	Ribosomal	protein	L18e/L15
Ribosomal_L30	PF00327.15	gi|292656664|ref|YP_003536561.1|	-	2e-15	56.0	0.0	3e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
OHCU_decarbox	PF09349.5	gi|292656664|ref|YP_003536561.1|	-	0.11	12.8	0.0	0.15	12.3	0.0	1.3	1	1	0	1	1	1	0	OHCU	decarboxylase
Ribosomal_S5	PF00333.15	gi|292656665|ref|YP_003536562.1|	-	2.2e-26	91.3	0.7	5.4e-26	90.1	0.5	1.7	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.10	gi|292656665|ref|YP_003536562.1|	-	2.9e-23	80.9	0.2	4.5e-23	80.3	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L18p	PF00861.17	gi|292656666|ref|YP_003536563.1|	-	3.3e-35	120.8	0.0	4.1e-35	120.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	L18p/L5e	family
Ribosomal_L19e	PF01280.15	gi|292656667|ref|YP_003536564.1|	-	3e-57	192.5	10.0	3.3e-57	192.4	6.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
SHOCT	PF09851.4	gi|292656667|ref|YP_003536564.1|	-	0.035	13.5	1.7	0.074	12.5	0.3	2.2	2	0	0	2	2	2	0	Short	C-terminal	domain
Ribosomal_L32e	PF01655.13	gi|292656668|ref|YP_003536565.1|	-	9.6e-35	118.9	0.3	2e-34	117.9	0.2	1.6	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.1	gi|292656668|ref|YP_003536565.1|	-	6.3e-14	51.8	11.0	8.5e-13	48.2	0.6	3.0	3	1	0	3	3	3	2	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|292656668|ref|YP_003536565.1|	-	8e-09	34.7	0.7	0.0022	17.5	0.1	2.9	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|292656668|ref|YP_003536565.1|	-	7.3e-07	28.6	0.0	2.5e-06	26.9	0.0	2.0	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.2	gi|292656668|ref|YP_003536565.1|	-	3.3e-06	26.8	0.4	3.3e-06	26.8	0.2	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|292656668|ref|YP_003536565.1|	-	0.00067	19.5	0.5	0.2	11.5	0.0	3.2	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
Cdd1	PF11731.3	gi|292656668|ref|YP_003536565.1|	-	0.0015	18.3	0.0	0.0052	16.6	0.0	1.9	1	1	0	1	1	1	1	Pathogenicity	locus
HHH_8	PF14716.1	gi|292656668|ref|YP_003536565.1|	-	0.0057	16.8	0.2	0.71	10.1	0.0	2.9	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|292656668|ref|YP_003536565.1|	-	0.084	12.8	0.0	0.2	11.6	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
PG_binding_2	PF08823.6	gi|292656668|ref|YP_003536565.1|	-	0.14	12.2	2.7	0.41	10.7	1.9	1.7	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
DUF2890	PF11081.3	gi|292656668|ref|YP_003536565.1|	-	9.9	6.1	12.7	13	5.7	8.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2890)
Ribosomal_L6	PF00347.18	gi|292656669|ref|YP_003536566.1|	-	6.2e-24	84.2	0.4	5.5e-11	42.8	0.0	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
OspE	PF02471.12	gi|292656669|ref|YP_003536566.1|	-	0.02	14.7	0.1	0.038	13.8	0.1	1.4	1	0	0	1	1	1	0	Borrelia	outer	surface	protein	E
BON	PF04972.12	gi|292656669|ref|YP_003536566.1|	-	0.096	12.4	1.2	6.6	6.5	0.0	2.8	3	0	0	3	3	3	0	BON	domain
HSP20	PF00011.16	gi|292656669|ref|YP_003536566.1|	-	1.4	8.8	3.7	24	4.8	0.1	3.4	3	1	1	4	4	4	0	Hsp20/alpha	crystallin	family
Ribosomal_S8	PF00410.14	gi|292656670|ref|YP_003536567.1|	-	1.3e-22	79.9	0.0	1.9e-22	79.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.16	gi|292656671|ref|YP_003536568.1|	-	2.5e-17	61.9	4.9	2.9e-17	61.7	3.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.1	gi|292656671|ref|YP_003536568.1|	-	0.0016	18.1	0.2	0.0018	17.9	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
DUF2616	PF11077.3	gi|292656671|ref|YP_003536568.1|	-	0.041	13.3	0.5	0.039	13.4	0.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2616)
RNA_POL_M_15KD	PF02150.11	gi|292656671|ref|YP_003536568.1|	-	0.36	10.5	3.4	1.7	8.3	0.4	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|292656671|ref|YP_003536568.1|	-	0.37	10.6	2.8	3.5	7.5	2.3	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L5_C	PF00673.16	gi|292656672|ref|YP_003536569.1|	-	3.6e-22	77.9	0.0	5.9e-22	77.2	0.0	1.4	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|292656672|ref|YP_003536569.1|	-	1.7e-15	56.5	0.0	3e-15	55.7	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S4e	PF00900.15	gi|292656673|ref|YP_003536570.1|	-	3.2e-25	87.5	0.0	8e-25	86.3	0.0	1.7	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|292656673|ref|YP_003536570.1|	-	3.1e-12	46.1	0.3	5e-12	45.4	0.2	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.20	gi|292656673|ref|YP_003536570.1|	-	0.00016	21.0	0.0	0.00046	19.5	0.0	1.9	1	0	0	1	1	1	1	S4	domain
KOW	PF00467.24	gi|292656673|ref|YP_003536570.1|	-	0.0074	15.9	0.3	0.0074	15.9	0.2	2.5	3	0	0	3	3	3	1	KOW	motif
KOW	PF00467.24	gi|292656674|ref|YP_003536571.1|	-	1.1e-05	24.8	0.1	1.1e-05	24.8	0.1	1.9	3	0	0	3	3	3	1	KOW	motif
Ribosomal_L14	PF00238.14	gi|292656675|ref|YP_003536572.1|	-	2.3e-37	127.4	0.2	2.6e-37	127.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
TRAM	PF01938.15	gi|292656675|ref|YP_003536572.1|	-	0.063	13.0	0.0	0.16	11.7	0.0	1.7	1	0	0	1	1	1	0	TRAM	domain
Ribosomal_S17	PF00366.15	gi|292656676|ref|YP_003536573.1|	-	3.3e-27	94.3	1.6	4.1e-27	94.0	1.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
UPF0086	PF01868.11	gi|292656677|ref|YP_003536574.1|	-	1.6e-26	91.7	0.0	2e-26	91.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.18	gi|292656678|ref|YP_003536575.1|	-	1.9e-17	62.6	0.1	2.1e-17	62.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	L29	protein
KH_2	PF07650.12	gi|292656679|ref|YP_003536576.1|	-	4.6e-16	58.1	0.0	9.7e-16	57.1	0.0	1.6	1	0	0	1	1	1	1	KH	domain
Ribosomal_S3_C	PF00189.15	gi|292656679|ref|YP_003536576.1|	-	2.6e-15	56.3	0.2	4e-15	55.8	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_1	PF00013.24	gi|292656679|ref|YP_003536576.1|	-	0.00074	19.1	1.9	0.0015	18.1	0.1	2.4	3	0	0	3	3	3	1	KH	domain
KH_5	PF13184.1	gi|292656679|ref|YP_003536576.1|	-	0.0084	15.8	0.0	0.047	13.5	0.0	2.3	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_3	PF13014.1	gi|292656679|ref|YP_003536576.1|	-	0.033	13.8	2.6	0.051	13.2	0.6	2.3	2	0	0	2	2	2	0	KH	domain
KH_4	PF13083.1	gi|292656679|ref|YP_003536576.1|	-	4.8	6.9	7.7	0.28	10.8	0.2	2.6	2	0	0	2	2	2	0	KH	domain
Ribosomal_L22	PF00237.14	gi|292656680|ref|YP_003536577.1|	-	1.5e-25	89.1	0.0	1.8e-25	88.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
ATP-grasp_5	PF13549.1	gi|292656680|ref|YP_003536577.1|	-	0.062	12.5	0.0	0.077	12.2	0.0	1.1	1	0	0	1	1	1	0	ATP-grasp	domain
Ribosomal_S19	PF00203.16	gi|292656681|ref|YP_003536578.1|	-	2.2e-27	94.4	0.0	2.9e-27	94.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Citrate_synt	PF00285.16	gi|292656681|ref|YP_003536578.1|	-	0.012	14.3	0.1	0.012	14.3	0.0	1.2	1	0	0	1	1	1	0	Citrate	synthase
Ribosomal_L2_C	PF03947.13	gi|292656682|ref|YP_003536579.1|	-	2.6e-48	163.1	1.4	3.5e-48	162.6	1.0	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|292656682|ref|YP_003536579.1|	-	4.1e-16	58.7	0.0	2.2e-15	56.3	0.0	2.3	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.15	gi|292656683|ref|YP_003536580.1|	-	1.8e-20	72.6	2.4	2.8e-20	72.0	1.7	1.3	1	1	0	1	1	1	1	Ribosomal	protein	L23
Ribosomal_L4	PF00573.17	gi|292656684|ref|YP_003536581.1|	-	2.3e-42	144.5	0.2	2.6e-42	144.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.17	gi|292656685|ref|YP_003536582.1|	-	1.1e-85	287.1	0.0	2.2e-85	286.2	0.0	1.4	2	0	0	2	2	2	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.12	gi|292656686|ref|YP_003536583.1|	-	4.6e-49	167.3	0.0	5.3e-49	167.1	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
DUF998	PF06197.8	gi|292656687|ref|YP_003536584.1|	-	0.048	12.9	8.7	0.057	12.7	6.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
Sex_peptide	PF08138.6	gi|292656687|ref|YP_003536584.1|	-	0.23	11.3	3.0	1	9.2	0.0	2.7	3	0	0	3	3	3	0	Sex	peptide	(SP)	family
HypA	PF01155.14	gi|292656689|ref|YP_003536586.1|	-	0.0039	16.8	0.1	0.0045	16.6	0.1	1.2	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Rubredoxin	PF00301.15	gi|292656689|ref|YP_003536586.1|	-	0.01	15.6	1.4	1.2	9.0	0.1	2.4	2	0	0	2	2	2	0	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|292656689|ref|YP_003536586.1|	-	0.67	9.9	4.0	2	8.4	2.8	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF35_N	PF12172.3	gi|292656689|ref|YP_003536586.1|	-	0.82	9.6	5.3	4.3	7.3	3.6	2.1	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-dskA_traR	PF01258.12	gi|292656689|ref|YP_003536586.1|	-	0.95	9.2	5.2	7.8	6.3	1.1	2.6	2	1	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Virul_fac_BrkB	PF03631.10	gi|292656690|ref|YP_003536587.1|	-	7.2e-39	133.7	23.2	8.4e-39	133.4	16.0	1.1	1	0	0	1	1	1	1	Virulence	factor	BrkB
YqhR	PF11085.3	gi|292656690|ref|YP_003536587.1|	-	0.36	10.3	6.1	2.6	7.5	1.0	2.3	2	0	0	2	2	2	0	Conserved	membrane	protein	YqhR
DUF2512	PF10710.4	gi|292656690|ref|YP_003536587.1|	-	0.45	9.9	2.7	1.5	8.2	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2512)
DUF1129	PF06570.6	gi|292656690|ref|YP_003536587.1|	-	8.4	5.6	6.9	1.5	8.0	1.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
ABC2_membrane_5	PF13346.1	gi|292656690|ref|YP_003536587.1|	-	8.7	5.5	10.2	0.77	9.0	3.8	1.6	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
DUF77	PF01910.12	gi|292656691|ref|YP_003536588.1|	-	2.2e-24	84.9	0.3	2.6e-24	84.7	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
Nucleo_P87	PF07267.6	gi|292656691|ref|YP_003536588.1|	-	0.086	11.5	0.0	0.086	11.5	0.0	1.0	1	0	0	1	1	1	0	Nucleopolyhedrovirus	capsid	protein	P87
MCH	PF02289.11	gi|292656692|ref|YP_003536589.1|	-	4.7e-87	291.9	0.1	5.2e-87	291.7	0.0	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
GTP_EFTU	PF00009.22	gi|292656694|ref|YP_003536591.1|	-	2.5e-35	121.6	0.0	3.9e-35	120.9	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|292656694|ref|YP_003536591.1|	-	1.6e-16	60.2	0.0	3.7e-16	59.0	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|292656694|ref|YP_003536591.1|	-	6.6e-10	38.9	0.3	2.1e-09	37.3	0.2	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|292656694|ref|YP_003536591.1|	-	0.0034	17.3	0.0	0.0065	16.4	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
ATP_bind_1	PF03029.12	gi|292656694|ref|YP_003536591.1|	-	0.004	16.7	1.0	0.024	14.1	0.0	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU_D4	PF14578.1	gi|292656694|ref|YP_003536591.1|	-	0.0049	16.4	1.6	0.0063	16.1	0.2	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
DnaJ	PF00226.26	gi|292656695|ref|YP_003536592.1|	-	7.7e-12	44.7	0.8	1.1e-11	44.2	0.1	1.6	2	0	0	2	2	2	1	DnaJ	domain
RPT	PF13446.1	gi|292656695|ref|YP_003536592.1|	-	0.0091	15.3	0.0	0.013	14.8	0.0	1.3	1	0	0	1	1	1	1	A	repeated	domain	in	UCH-protein
DUF3353	PF11833.3	gi|292656695|ref|YP_003536592.1|	-	1.4	8.3	6.6	5.8	6.3	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3353)
OMPdecase	PF00215.19	gi|292656696|ref|YP_003536593.1|	-	7.5e-32	110.5	0.0	8.9e-32	110.3	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
MFS_1	PF07690.11	gi|292656697|ref|YP_003536594.1|	-	6e-17	61.3	45.1	1e-11	44.2	12.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|292656697|ref|YP_003536594.1|	-	3e-05	23.7	0.1	0.00015	21.5	0.1	2.2	1	0	0	1	1	1	1	MFS_1	like	family
Sugar_tr	PF00083.19	gi|292656697|ref|YP_003536594.1|	-	0.0087	14.6	12.8	0.018	13.6	3.0	3.0	2	2	0	2	2	2	2	Sugar	(and	other)	transporter
DUF3767	PF12597.3	gi|292656697|ref|YP_003536594.1|	-	9.2	5.9	6.8	0.45	10.1	0.6	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3767)
QRPTase_C	PF01729.14	gi|292656698|ref|YP_003536595.1|	-	7.7e-52	175.2	0.2	1.3e-51	174.5	0.1	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|292656698|ref|YP_003536595.1|	-	1.1e-18	66.7	0.2	2.9e-18	65.4	0.1	1.7	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
FAD_binding_2	PF00890.19	gi|292656699|ref|YP_003536596.1|	-	6.4e-76	255.8	10.8	8.6e-76	255.4	7.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|292656699|ref|YP_003536596.1|	-	5e-12	45.4	10.8	1.4e-10	40.6	7.5	2.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292656699|ref|YP_003536596.1|	-	2.2e-10	40.7	0.0	2.9e-09	37.1	0.0	2.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|292656699|ref|YP_003536596.1|	-	1.2e-07	31.0	0.9	4e-06	25.9	0.9	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|292656699|ref|YP_003536596.1|	-	5.4e-07	29.0	10.3	6.2e-07	28.8	4.3	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292656699|ref|YP_003536596.1|	-	1.7e-06	26.7	0.2	0.002	16.6	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|292656699|ref|YP_003536596.1|	-	0.0001	22.2	0.6	0.0003	20.7	0.4	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|292656699|ref|YP_003536596.1|	-	0.00055	19.0	0.1	0.0012	18.0	0.1	1.5	1	0	0	1	1	1	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292656699|ref|YP_003536596.1|	-	0.005	16.4	0.3	0.0084	15.6	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.22	gi|292656699|ref|YP_003536596.1|	-	0.0053	17.1	0.2	0.014	15.7	0.1	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Succ_DH_flav_C	PF02910.15	gi|292656699|ref|YP_003536596.1|	-	0.019	14.8	0.0	0.038	13.8	0.0	1.4	1	0	0	1	1	1	0	Fumarate	reductase	flavoprotein	C-term
3HCDH_N	PF02737.13	gi|292656699|ref|YP_003536596.1|	-	0.025	14.2	0.8	0.053	13.1	0.5	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292656699|ref|YP_003536596.1|	-	0.03	14.5	0.1	0.055	13.7	0.1	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Thi4	PF01946.12	gi|292656699|ref|YP_003536596.1|	-	0.069	12.2	0.4	0.16	11.0	0.1	1.7	2	0	0	2	2	2	0	Thi4	family
Pyr_redox_3	PF13738.1	gi|292656699|ref|YP_003536596.1|	-	0.089	12.8	0.1	0.95	9.4	0.1	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|292656699|ref|YP_003536596.1|	-	0.11	11.4	0.8	0.16	10.8	0.6	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
DUF4250	PF14056.1	gi|292656699|ref|YP_003536596.1|	-	0.18	11.5	0.2	0.35	10.6	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
Trp_halogenase	PF04820.9	gi|292656699|ref|YP_003536596.1|	-	0.26	9.8	1.1	1.7	7.1	0.2	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
NadA	PF02445.11	gi|292656700|ref|YP_003536597.1|	-	1.5e-94	316.1	0.0	1.8e-94	315.9	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Glyco_hydro_71	PF03659.9	gi|292656700|ref|YP_003536597.1|	-	0.016	13.7	0.0	0.023	13.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	71
Amidohydro_3	PF07969.6	gi|292656701|ref|YP_003536598.1|	-	3.1e-18	66.2	0.2	3.8e-18	65.8	0.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|292656701|ref|YP_003536598.1|	-	1.8e-11	43.6	0.0	3.4e-11	42.8	0.0	1.5	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|292656701|ref|YP_003536598.1|	-	7.5e-07	29.4	0.3	1.1e-06	28.9	0.2	1.4	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|292656701|ref|YP_003536598.1|	-	0.00064	19.4	0.0	0.00098	18.8	0.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|292656701|ref|YP_003536598.1|	-	0.077	13.1	0.1	0.17	12.0	0.1	1.6	1	0	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
HMG-CoA_red	PF00368.13	gi|292656702|ref|YP_003536599.1|	-	3.1e-139	463.7	8.9	3.5e-139	463.6	6.2	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
zf-Di19	PF05605.7	gi|292656703|ref|YP_003536600.1|	-	0.074	13.1	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Zn-ribbon_8	PF09723.5	gi|292656703|ref|YP_003536600.1|	-	0.099	12.6	0.9	0.22	11.5	0.6	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF1922	PF09082.5	gi|292656703|ref|YP_003536600.1|	-	0.13	12.3	0.1	0.2	11.7	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1922)
Cupin_2	PF07883.6	gi|292656704|ref|YP_003536601.1|	-	4.6e-15	54.8	1.8	6.1e-15	54.4	1.3	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.14	gi|292656704|ref|YP_003536601.1|	-	5.2e-05	22.9	0.3	6.3e-05	22.6	0.2	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_6	PF12852.2	gi|292656704|ref|YP_003536601.1|	-	0.032	13.8	0.1	0.035	13.7	0.1	1.1	1	0	0	1	1	1	0	Cupin
Cupin_1	PF00190.17	gi|292656704|ref|YP_003536601.1|	-	0.095	12.1	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Cupin
DUF1637	PF07847.7	gi|292656704|ref|YP_003536601.1|	-	0.17	11.2	0.1	0.65	9.3	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1637)
Iso_dh	PF00180.15	gi|292656707|ref|YP_003536604.1|	-	6.4e-107	357.5	0.0	1.3e-106	356.5	0.0	1.4	1	1	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
FtsJ	PF01728.14	gi|292656707|ref|YP_003536604.1|	-	0.049	13.6	0.0	0.084	12.8	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
RHH_1	PF01402.16	gi|292656707|ref|YP_003536604.1|	-	1.4	8.8	3.5	7.6	6.6	0.0	3.5	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
Asparaginase_2	PF01112.13	gi|292656708|ref|YP_003536605.1|	-	4.3e-50	170.2	6.5	8.4e-25	87.1	0.1	2.0	2	0	0	2	2	2	2	Asparaginase
adh_short	PF00106.20	gi|292656709|ref|YP_003536606.1|	-	2.7e-18	66.4	0.3	4.4e-18	65.7	0.2	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|292656709|ref|YP_003536606.1|	-	1.5e-07	31.3	0.1	2.4e-07	30.5	0.1	1.3	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|292656709|ref|YP_003536606.1|	-	0.00028	20.7	0.0	0.00042	20.1	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|292656709|ref|YP_003536606.1|	-	0.0012	18.2	0.0	0.0021	17.5	0.0	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|292656709|ref|YP_003536606.1|	-	0.055	12.3	0.0	0.081	11.7	0.0	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DSBA	PF01323.15	gi|292656711|ref|YP_003536608.1|	-	2.2e-36	125.2	0.0	2.5e-36	125.0	0.0	1.0	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_4	PF13462.1	gi|292656711|ref|YP_003536608.1|	-	3.2e-10	40.2	0.1	1.4e-06	28.3	0.0	2.2	1	1	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.1	gi|292656711|ref|YP_003536608.1|	-	7.1e-08	32.6	0.1	2.9e-06	27.4	0.1	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
E1_dh	PF00676.15	gi|292656714|ref|YP_003536611.1|	-	1.1e-68	231.1	0.0	1.4e-68	230.8	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|292656714|ref|YP_003536611.1|	-	1.2e-06	27.7	0.1	2e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|292656714|ref|YP_003536611.1|	-	1.5e-05	24.6	0.5	0.00024	20.7	0.3	2.5	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transketolase_N	PF00456.16	gi|292656714|ref|YP_003536611.1|	-	0.00028	19.8	0.0	0.00042	19.2	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
RecX	PF02631.11	gi|292656714|ref|YP_003536611.1|	-	0.1	12.7	0.1	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	RecX	family
Transket_pyr	PF02779.19	gi|292656715|ref|YP_003536612.1|	-	4.3e-45	153.3	0.6	6.2e-45	152.8	0.4	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|292656715|ref|YP_003536612.1|	-	1.5e-33	115.3	0.1	2.6e-33	114.5	0.1	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Biotin_lipoyl	PF00364.17	gi|292656716|ref|YP_003536613.1|	-	4.4e-17	61.4	0.0	5.2e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.1	gi|292656716|ref|YP_003536613.1|	-	3.6e-10	39.3	0.0	0.00023	20.7	0.2	2.1	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD	PF00529.15	gi|292656716|ref|YP_003536613.1|	-	3.4e-06	26.6	0.1	0.00095	18.5	0.1	2.0	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|292656716|ref|YP_003536613.1|	-	1.4e-05	25.3	0.1	0.025	14.9	0.1	2.1	1	1	1	2	2	2	2	HlyD	family	secretion	protein
QRPTase_N	PF02749.11	gi|292656716|ref|YP_003536613.1|	-	4.8e-05	23.1	0.1	0.13	12.0	0.0	2.1	1	1	1	2	2	2	2	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
HlyD_2	PF12700.2	gi|292656716|ref|YP_003536613.1|	-	5.2e-05	22.5	0.0	0.081	12.0	0.0	2.0	1	1	1	2	2	2	2	HlyD	family	secretion	protein
RnfC_N	PF13375.1	gi|292656716|ref|YP_003536613.1|	-	7.5e-05	22.3	0.2	0.0004	20.0	0.1	1.8	1	1	1	2	2	2	1	RnfC	Barrel	sandwich	hybrid	domain
GCV_H	PF01597.14	gi|292656716|ref|YP_003536613.1|	-	0.017	14.7	0.2	0.021	14.5	0.1	1.2	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
PTS_EIIA_1	PF00358.15	gi|292656716|ref|YP_003536613.1|	-	0.046	13.2	0.1	0.21	11.1	0.0	1.9	1	1	1	2	2	2	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
NQRA	PF05896.6	gi|292656716|ref|YP_003536613.1|	-	0.053	12.7	0.1	0.083	12.0	0.1	1.3	1	1	0	1	1	1	0	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
DUF2118	PF09891.4	gi|292656716|ref|YP_003536613.1|	-	0.087	12.5	0.1	0.51	10.0	0.1	1.8	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
PP_kinase_C	PF13090.1	gi|292656717|ref|YP_003536614.1|	-	1e-155	517.7	0.0	1.3e-155	517.3	0.0	1.1	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain
PP_kinase	PF02503.12	gi|292656717|ref|YP_003536614.1|	-	5.3e-57	192.6	0.0	1e-56	191.7	0.0	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.1	gi|292656717|ref|YP_003536614.1|	-	1.2e-36	125.1	0.0	2.4e-36	124.1	0.0	1.6	1	0	0	1	1	1	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.1	gi|292656717|ref|YP_003536614.1|	-	8.3e-09	35.2	0.0	0.00017	21.3	0.0	2.4	2	0	0	2	2	2	2	PLD-like	domain
Metallophos	PF00149.23	gi|292656718|ref|YP_003536615.1|	-	2.2e-12	46.8	1.2	1e-11	44.6	0.8	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|292656718|ref|YP_003536615.1|	-	1.9e-10	40.7	0.0	3.9e-10	39.7	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|292656718|ref|YP_003536615.1|	-	0.0017	17.5	0.0	0.011	14.9	0.0	2.0	1	1	1	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
Peptidase_M24	PF00557.19	gi|292656719|ref|YP_003536616.1|	-	1.3e-44	152.3	0.8	1.5e-44	152.0	0.5	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
HIT	PF01230.18	gi|292656720|ref|YP_003536617.1|	-	3e-12	46.9	0.0	4.6e-12	46.3	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|292656720|ref|YP_003536617.1|	-	0.00012	22.2	0.0	0.00022	21.4	0.0	1.4	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|292656720|ref|YP_003536617.1|	-	0.00067	19.2	0.0	0.0016	18.1	0.0	1.5	2	0	0	2	2	2	1	Protein	similar	to	CwfJ	C-terminus	1
RecR	PF02132.10	gi|292656720|ref|YP_003536617.1|	-	1	8.8	3.4	2.8	7.4	1.8	1.9	2	0	0	2	2	2	0	RecR	protein
Cation_efflux	PF01545.16	gi|292656721|ref|YP_003536618.1|	-	6e-56	189.6	0.5	6.7e-56	189.4	0.3	1.0	1	0	0	1	1	1	1	Cation	efflux	family
Peptidase_S24	PF00717.18	gi|292656722|ref|YP_003536619.1|	-	1.7e-05	24.3	0.3	9.2e-05	22.0	0.2	2.0	1	1	0	1	1	1	1	Peptidase	S24-like
PNP_UDP_1	PF01048.15	gi|292656722|ref|YP_003536619.1|	-	0.051	12.5	0.1	0.063	12.2	0.0	1.3	1	0	0	1	1	1	0	Phosphorylase	superfamily
Acetyltransf_1	PF00583.19	gi|292656723|ref|YP_003536620.1|	-	1.9e-11	43.8	0.0	2.8e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|292656723|ref|YP_003536620.1|	-	2.1e-09	37.3	0.0	2.9e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656723|ref|YP_003536620.1|	-	7.1e-07	29.1	0.0	1.2e-06	28.3	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656723|ref|YP_003536620.1|	-	0.00026	21.0	0.0	0.00031	20.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656723|ref|YP_003536620.1|	-	0.00032	20.8	0.0	0.00038	20.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656723|ref|YP_003536620.1|	-	0.0011	18.7	0.0	0.0016	18.1	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
GNAT_acetyltr_2	PF13718.1	gi|292656723|ref|YP_003536620.1|	-	0.0058	15.9	0.0	0.028	13.7	0.0	1.8	2	0	0	2	2	2	1	GNAT	acetyltransferase	2
Acetyltransf_CG	PF14542.1	gi|292656723|ref|YP_003536620.1|	-	0.0078	16.0	0.1	0.012	15.4	0.1	1.2	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Radical_SAM	PF04055.16	gi|292656724|ref|YP_003536621.1|	-	6.9e-24	84.8	0.1	1.3e-23	84.0	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|292656724|ref|YP_003536621.1|	-	3e-19	68.6	0.1	7.1e-19	67.4	0.1	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.15	gi|292656724|ref|YP_003536621.1|	-	2.4e-05	24.0	0.1	5.1e-05	22.9	0.1	1.6	1	0	0	1	1	1	1	TRAM	domain
PQQ_2	PF13360.1	gi|292656725|ref|YP_003536622.1|	-	1.6e-28	99.8	4.9	1.7e-12	47.3	0.5	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|292656725|ref|YP_003536622.1|	-	3.1e-24	84.4	18.0	4.5e-07	29.9	0.5	8.5	8	0	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.16	gi|292656725|ref|YP_003536622.1|	-	2.6e-17	61.3	5.8	7.7e-06	25.1	0.0	6.5	6	0	0	6	6	6	5	PQQ	enzyme	repeat
PQQ_2	PF13360.1	gi|292656726|ref|YP_003536623.1|	-	8.2e-26	90.9	9.0	2.8e-13	49.9	2.1	4.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|292656726|ref|YP_003536623.1|	-	3.8e-20	71.5	30.3	0.0095	16.1	0.1	8.4	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.16	gi|292656726|ref|YP_003536623.1|	-	2.2e-06	26.8	2.2	0.74	9.4	0.0	5.6	6	0	0	6	6	6	3	PQQ	enzyme	repeat
Na_Ca_ex	PF01699.19	gi|292656727|ref|YP_003536624.1|	-	5.9e-06	25.9	5.8	7.3e-06	25.6	4.0	1.1	1	0	0	1	1	1	1	Sodium/calcium	exchanger	protein
DUF4231	PF14015.1	gi|292656727|ref|YP_003536624.1|	-	0.4	10.6	4.5	0.48	10.4	3.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
PRA1	PF03208.14	gi|292656727|ref|YP_003536624.1|	-	0.4	10.0	3.5	0.41	9.9	2.4	1.2	1	0	0	1	1	1	0	PRA1	family	protein
UCR_Fe-S_N	PF10399.4	gi|292656727|ref|YP_003536624.1|	-	3.5	6.8	6.4	0.35	10.0	1.1	1.9	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Na_Ca_ex	PF01699.19	gi|292656728|ref|YP_003536625.1|	-	6.5e-27	93.8	7.5	9.6e-27	93.2	5.2	1.3	1	0	0	1	1	1	1	Sodium/calcium	exchanger	protein
DUF2124	PF09897.4	gi|292656728|ref|YP_003536625.1|	-	0.12	12.0	0.0	0.69	9.5	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2124)
DeoC	PF01791.4	gi|292656729|ref|YP_003536626.1|	-	5.2e-41	140.4	4.6	5.8e-41	140.3	3.2	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
DUF63	PF01889.12	gi|292656730|ref|YP_003536627.1|	-	3.1e-18	66.8	2.8	4.2e-18	66.3	1.9	1.1	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
PfkB	PF00294.19	gi|292656731|ref|YP_003536628.1|	-	2e-53	181.4	3.7	2.4e-53	181.2	2.5	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
MEA1	PF06910.6	gi|292656731|ref|YP_003536628.1|	-	0.072	12.7	1.2	0.11	12.1	0.2	1.7	2	0	0	2	2	2	0	Male	enhanced	antigen	1	(MEA1)
GtrA	PF04138.9	gi|292656732|ref|YP_003536629.1|	-	0.11	12.4	6.3	0.073	13.0	2.6	2.0	2	1	0	2	2	2	0	GtrA-like	protein
PNP_UDP_1	PF01048.15	gi|292656733|ref|YP_003536630.1|	-	5.1e-47	159.8	1.8	6e-47	159.5	1.3	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Usp	PF00582.21	gi|292656734|ref|YP_003536631.1|	-	2.9e-13	50.2	1.7	3.9e-08	33.6	0.1	3.1	2	1	0	2	2	2	2	Universal	stress	protein	family
HPP	PF04982.8	gi|292656734|ref|YP_003536631.1|	-	9.5e-06	25.4	3.7	9.5e-06	25.4	2.6	1.8	2	0	0	2	2	2	1	HPP	family
TrkA_N	PF02254.13	gi|292656735|ref|YP_003536632.1|	-	1.6e-28	99.0	0.5	2.3e-28	98.4	0.3	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.11	gi|292656735|ref|YP_003536632.1|	-	1.1e-11	44.2	5.0	1.1e-11	44.2	3.4	2.5	3	0	0	3	3	3	1	Ion	channel
Ion_trans	PF00520.26	gi|292656735|ref|YP_003536632.1|	-	0.00041	19.6	0.5	0.00062	19.0	0.3	1.3	1	0	0	1	1	1	1	Ion	transport	protein
ADH_zinc_N	PF00107.21	gi|292656735|ref|YP_003536632.1|	-	0.032	13.7	0.5	2.5	7.6	0.0	2.5	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
NTP_transf_3	PF12804.2	gi|292656735|ref|YP_003536632.1|	-	0.033	14.2	0.5	0.11	12.5	0.3	1.8	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
Saccharop_dh	PF03435.13	gi|292656735|ref|YP_003536632.1|	-	0.052	12.5	0.0	0.1	11.5	0.0	1.5	1	1	0	1	1	1	0	Saccharopine	dehydrogenase
Dak1_2	PF13684.1	gi|292656735|ref|YP_003536632.1|	-	0.14	11.0	0.0	0.2	10.5	0.0	1.3	1	0	0	1	1	1	0	Dihydroxyacetone	kinase	family
TrkA_C	PF02080.16	gi|292656736|ref|YP_003536633.1|	-	1.6e-14	53.2	0.2	1.4e-13	50.2	0.0	2.4	2	0	0	2	2	2	1	TrkA-C	domain
DUF4131	PF13567.1	gi|292656736|ref|YP_003536633.1|	-	0.055	12.8	0.5	0.21	10.9	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
TrkA_C	PF02080.16	gi|292656737|ref|YP_003536634.1|	-	3.8e-07	29.5	0.6	1.3e-06	27.9	0.4	2.0	1	0	0	1	1	1	1	TrkA-C	domain
ABC2_membrane	PF01061.19	gi|292656737|ref|YP_003536634.1|	-	1.2	8.3	5.4	1.9	7.5	3.8	1.2	1	0	0	1	1	1	0	ABC-2	type	transporter
ThiS	PF02597.15	gi|292656738|ref|YP_003536635.1|	-	4.1e-14	52.7	0.1	4.6e-14	52.5	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.1	gi|292656738|ref|YP_003536635.1|	-	0.024	14.1	0.0	5	6.7	0.0	2.1	2	0	0	2	2	2	0	Mut7-C	ubiquitin
Rieske	PF00355.21	gi|292656739|ref|YP_003536636.1|	-	1.7e-06	27.4	0.1	3.2e-06	26.6	0.1	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
PEPcase	PF00311.12	gi|292656740|ref|YP_003536637.1|	-	5.6e-245	814.9	0.1	7.6e-245	814.5	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.1	gi|292656740|ref|YP_003536637.1|	-	0.00031	19.1	0.1	0.00079	17.8	0.0	1.6	2	0	0	2	2	2	1	Phosphoenolpyruvate	carboxylase
Aldo_ket_red	PF00248.16	gi|292656741|ref|YP_003536638.1|	-	3e-61	206.7	0.0	3.6e-61	206.4	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Mac	PF12464.3	gi|292656742|ref|YP_003536639.1|	-	1.8e-23	82.2	0.3	6.8e-23	80.4	0.3	1.7	2	0	0	2	2	2	1	Maltose	acetyltransferase
Hexapep_2	PF14602.1	gi|292656742|ref|YP_003536639.1|	-	1.4e-15	56.5	6.4	2.3e-11	43.0	1.0	2.6	2	0	0	2	2	2	2	Hexapeptide	repeat	of	succinyl-transferase
Hexapep	PF00132.19	gi|292656742|ref|YP_003536639.1|	-	1.9e-14	52.3	8.3	1.5e-10	40.0	1.5	2.8	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
CTP_synth_N	PF06418.9	gi|292656743|ref|YP_003536640.1|	-	3.2e-125	416.7	0.0	4.7e-125	416.2	0.0	1.2	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|292656743|ref|YP_003536640.1|	-	6.8e-52	175.7	0.0	1.1e-51	174.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|292656743|ref|YP_003536640.1|	-	8.1e-10	38.5	0.0	4.1e-09	36.2	0.0	1.9	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.18	gi|292656743|ref|YP_003536640.1|	-	1e-07	31.5	0.1	1.7e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GMP_synt_C	PF00958.17	gi|292656744|ref|YP_003536641.1|	-	4.5e-29	100.0	0.1	8.6e-29	99.1	0.0	1.4	1	0	0	1	1	1	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|292656744|ref|YP_003536641.1|	-	1.1e-08	34.3	0.0	2.5e-05	23.2	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|292656744|ref|YP_003536641.1|	-	2.5e-05	22.9	0.0	0.0011	17.6	0.0	2.1	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|292656744|ref|YP_003536641.1|	-	9.6e-05	21.9	0.1	0.00031	20.3	0.0	1.8	2	1	0	2	2	2	1	Asparagine	synthase
ThiI	PF02568.9	gi|292656744|ref|YP_003536641.1|	-	0.00028	20.4	0.0	0.00065	19.2	0.0	1.6	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
PAPS_reduct	PF01507.14	gi|292656744|ref|YP_003536641.1|	-	0.013	15.3	0.0	0.02	14.7	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
Arginosuc_synth	PF00764.14	gi|292656744|ref|YP_003536641.1|	-	0.046	12.7	0.0	0.07	12.1	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
QueC	PF06508.8	gi|292656744|ref|YP_003536641.1|	-	0.06	12.6	0.0	0.18	11.0	0.0	1.8	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
TrkA_N	PF02254.13	gi|292656745|ref|YP_003536642.1|	-	1e-06	28.6	0.3	1.2e-06	28.4	0.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
YukD	PF08817.5	gi|292656745|ref|YP_003536642.1|	-	0.089	13.3	0.6	0.14	12.7	0.1	1.7	2	0	0	2	2	2	0	WXG100	protein	secretion	system	(Wss),	protein	YukD
DUF4397	PF14344.1	gi|292656746|ref|YP_003536643.1|	-	5.1e-55	185.0	7.9	3e-38	130.8	2.4	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4397)
GHMP_kinases_N	PF00288.21	gi|292656747|ref|YP_003536644.1|	-	1.3e-06	28.3	0.1	2.4e-06	27.4	0.1	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|292656747|ref|YP_003536644.1|	-	3e-06	27.3	0.2	7.5e-06	26.0	0.0	1.8	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
KaiC	PF06745.8	gi|292656748|ref|YP_003536645.1|	-	3.8e-09	36.0	0.0	0.00033	19.8	0.0	2.1	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|292656748|ref|YP_003536645.1|	-	4.1e-07	29.5	0.8	4.5e-06	26.1	0.5	2.2	1	1	0	1	1	1	1	AAA	domain
T2SF	PF00482.18	gi|292656749|ref|YP_003536646.1|	-	0.0028	17.5	0.2	0.0051	16.7	0.2	1.4	1	0	0	1	1	1	1	Type	II	secretion	system	(T2SS),	protein	F
Reo_sigmaC	PF04582.7	gi|292656749|ref|YP_003536646.1|	-	0.0069	15.6	0.1	0.0095	15.1	0.1	1.1	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
zf-C3HC4_3	PF13920.1	gi|292656749|ref|YP_003536646.1|	-	0.013	15.1	0.8	0.019	14.6	0.5	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Baculo_PEP_C	PF04513.7	gi|292656749|ref|YP_003536646.1|	-	0.031	14.0	0.3	0.71	9.6	0.1	2.2	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HypA	PF01155.14	gi|292656749|ref|YP_003536646.1|	-	0.052	13.2	0.2	0.091	12.4	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
MtrG	PF04210.8	gi|292656749|ref|YP_003536646.1|	-	0.063	12.9	1.1	2.1	8.0	0.0	2.6	2	1	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
FH2	PF02181.18	gi|292656749|ref|YP_003536646.1|	-	0.11	11.3	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	Formin	Homology	2	Domain
IncA	PF04156.9	gi|292656749|ref|YP_003536646.1|	-	0.37	10.3	3.8	1.8	8.1	2.6	1.9	1	1	0	1	1	1	0	IncA	protein
Zn-ribbon_8	PF09723.5	gi|292656749|ref|YP_003536646.1|	-	0.82	9.6	3.8	2.8	7.9	2.6	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292656749|ref|YP_003536646.1|	-	1.6	8.4	4.1	22	4.7	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4140	PF13600.1	gi|292656749|ref|YP_003536646.1|	-	1.7	9.1	9.1	1.1	9.7	1.5	2.9	2	1	1	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
zinc_ribbon_4	PF13717.1	gi|292656749|ref|YP_003536646.1|	-	2.5	7.8	4.2	27	4.5	0.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
CCDC-167	PF15188.1	gi|292656749|ref|YP_003536646.1|	-	2.8	7.9	6.2	2.7	7.9	0.6	2.5	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
TFIIS_C	PF01096.13	gi|292656751|ref|YP_003536648.1|	-	1.2e-16	60.0	3.7	1.2e-16	60.0	2.6	2.7	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|292656751|ref|YP_003536648.1|	-	9.8e-05	21.9	10.8	0.00012	21.6	1.4	3.2	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.6	gi|292656751|ref|YP_003536648.1|	-	0.00021	20.8	10.7	0.042	13.5	0.8	2.9	2	1	1	3	3	3	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|292656751|ref|YP_003536648.1|	-	0.00096	18.9	9.5	0.13	12.0	0.8	2.6	2	1	1	3	3	3	2	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|292656751|ref|YP_003536648.1|	-	0.0039	16.9	1.7	0.0039	16.9	1.2	2.3	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|292656751|ref|YP_003536648.1|	-	0.08	12.4	10.6	0.64	9.5	0.1	3.5	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
SpdB	PF05122.8	gi|292656751|ref|YP_003536648.1|	-	0.091	12.8	1.2	0.28	11.2	0.1	2.1	2	0	0	2	2	2	0	Mobile	element	transfer	protein
UPF0547	PF10571.4	gi|292656751|ref|YP_003536648.1|	-	0.31	10.7	12.8	1.3	8.7	0.2	3.4	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Ogr_Delta	PF04606.7	gi|292656751|ref|YP_003536648.1|	-	0.38	10.4	11.4	4.4	7.0	0.0	3.9	2	2	1	3	3	3	0	Ogr/Delta-like	zinc	finger
IBR	PF01485.16	gi|292656751|ref|YP_003536648.1|	-	0.39	10.6	9.3	45	4.0	6.4	3.0	1	1	0	1	1	1	0	IBR	domain
HypA	PF01155.14	gi|292656751|ref|YP_003536648.1|	-	0.79	9.4	8.8	0.73	9.5	1.6	2.6	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Nudix_N_2	PF14803.1	gi|292656751|ref|YP_003536648.1|	-	0.8	9.4	10.6	3.5	7.3	0.1	3.8	3	1	1	4	4	4	0	Nudix	N-terminal
GFA	PF04828.9	gi|292656751|ref|YP_003536648.1|	-	0.93	9.4	9.0	3.5	7.6	0.3	3.0	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Terminase_GpA	PF05876.7	gi|292656751|ref|YP_003536648.1|	-	1.4	7.1	4.8	0.64	8.2	1.9	1.4	1	1	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
YhfH	PF14149.1	gi|292656751|ref|YP_003536648.1|	-	1.5	8.6	11.3	9.1	6.1	1.9	3.6	3	1	0	3	3	3	0	YhfH-like	protein
zinc_ribbon_5	PF13719.1	gi|292656751|ref|YP_003536648.1|	-	3.4	7.3	7.5	11	5.6	0.2	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|292656751|ref|YP_003536648.1|	-	3.9	7.2	10.9	12	5.6	0.6	3.7	4	0	0	4	4	4	0	Adenylate	kinase,	active	site	lid
zf-tcix	PF14952.1	gi|292656751|ref|YP_003536648.1|	-	5.3	6.4	6.3	2.6	7.4	0.2	2.7	3	0	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-C4_Topoisom	PF01396.14	gi|292656751|ref|YP_003536648.1|	-	5.6	6.5	9.5	1	8.9	0.6	3.1	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ribbon_3	PF13248.1	gi|292656751|ref|YP_003536648.1|	-	6.1	6.1	10.1	22	4.4	0.8	3.7	3	1	0	3	3	3	0	zinc-ribbon	domain
C1_1	PF00130.17	gi|292656751|ref|YP_003536648.1|	-	6.9	6.4	11.1	8.9	6.1	0.9	2.9	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zinc_ribbon_4	PF13717.1	gi|292656751|ref|YP_003536648.1|	-	8.7	6.1	9.2	10	5.9	0.2	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
Sgf11	PF08209.6	gi|292656751|ref|YP_003536648.1|	-	10	5.5	6.4	18	4.7	0.1	2.9	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
LMP	PF04778.7	gi|292656752|ref|YP_003536649.1|	-	0.0022	17.7	1.9	0.0031	17.2	0.8	1.6	2	0	0	2	2	2	1	LMP	repeated	region
Abhydrolase_5	PF12695.2	gi|292656754|ref|YP_003536651.1|	-	5.8e-16	58.5	1.4	7.8e-16	58.1	0.9	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|292656754|ref|YP_003536651.1|	-	6.2e-08	32.7	12.1	0.00013	21.9	3.9	2.3	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|292656754|ref|YP_003536651.1|	-	3.3e-07	29.8	0.2	4.6e-07	29.3	0.1	1.3	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.13	gi|292656754|ref|YP_003536651.1|	-	0.00023	20.7	0.2	0.00086	18.8	0.1	1.7	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_1	PF00561.15	gi|292656754|ref|YP_003536651.1|	-	0.003	17.1	1.6	0.29	10.6	0.3	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
FSH1	PF03959.8	gi|292656754|ref|YP_003536651.1|	-	0.011	15.1	0.0	0.029	13.8	0.0	1.6	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.11	gi|292656754|ref|YP_003536651.1|	-	0.015	14.7	0.0	0.02	14.3	0.0	1.1	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
Lipase_3	PF01764.20	gi|292656754|ref|YP_003536651.1|	-	0.015	14.8	0.0	0.021	14.4	0.0	1.2	1	0	0	1	1	1	0	Lipase	(class	3)
Peptidase_S9	PF00326.16	gi|292656754|ref|YP_003536651.1|	-	0.024	13.8	0.8	0.076	12.2	0.3	1.9	1	1	1	2	2	2	0	Prolyl	oligopeptidase	family
BAAT_C	PF08840.6	gi|292656754|ref|YP_003536651.1|	-	0.025	14.3	0.0	0.038	13.6	0.0	1.5	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF1100	PF06500.6	gi|292656754|ref|YP_003536651.1|	-	0.039	12.5	0.0	0.052	12.1	0.0	1.1	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1100)
DUF2048	PF09752.4	gi|292656754|ref|YP_003536651.1|	-	0.075	11.8	0.2	0.1	11.4	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
PspA_IM30	PF04012.7	gi|292656755|ref|YP_003536652.1|	-	1e-28	100.2	41.6	5.4e-28	97.8	28.8	1.8	1	1	0	1	1	1	1	PspA/IM30	family
Spc7	PF08317.6	gi|292656755|ref|YP_003536652.1|	-	0.0041	15.8	23.0	0.0041	15.8	15.9	1.8	1	1	1	2	2	2	1	Spc7	kinetochore	protein
Snf7	PF03357.16	gi|292656755|ref|YP_003536652.1|	-	0.015	14.6	17.8	0.015	14.6	12.3	3.8	1	1	2	3	3	3	0	Snf7
Flagellin_C	PF00700.16	gi|292656755|ref|YP_003536652.1|	-	0.035	14.2	12.2	0.21	11.7	0.0	4.1	1	1	2	3	3	3	0	Bacterial	flagellin	C-terminal	helical	region
DUF4200	PF13863.1	gi|292656755|ref|YP_003536652.1|	-	0.08	12.8	37.3	0.13	12.2	2.6	4.0	2	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Cut8_C	PF08559.5	gi|292656755|ref|YP_003536652.1|	-	0.12	12.2	2.0	0.61	9.8	0.0	2.8	3	1	1	4	4	4	0	Cut8	six-helix	bundle
DUF972	PF06156.8	gi|292656755|ref|YP_003536652.1|	-	0.31	11.4	25.7	1.1	9.6	5.3	3.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
AAA_13	PF13166.1	gi|292656755|ref|YP_003536652.1|	-	0.32	9.3	23.5	0.07	11.5	13.6	1.6	1	1	0	1	1	1	0	AAA	domain
UCH	PF00443.24	gi|292656755|ref|YP_003536652.1|	-	0.44	9.6	3.7	0.47	9.5	2.6	1.2	1	0	0	1	1	1	0	Ubiquitin	carboxyl-terminal	hydrolase
DUF342	PF03961.8	gi|292656755|ref|YP_003536652.1|	-	0.91	7.8	22.9	0.33	9.3	10.9	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF342)
STAT_alpha	PF01017.15	gi|292656755|ref|YP_003536652.1|	-	0.94	9.1	18.9	3.3	7.4	2.8	2.6	1	1	0	2	2	2	0	STAT	protein,	all-alpha	domain
ERM	PF00769.14	gi|292656755|ref|YP_003536652.1|	-	1.4	8.3	42.0	0.049	13.1	24.2	1.8	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
Prominin	PF05478.6	gi|292656755|ref|YP_003536652.1|	-	2.4	5.5	11.0	3.9	4.8	7.6	1.3	1	0	0	1	1	1	0	Prominin
MerR-DNA-bind	PF09278.6	gi|292656755|ref|YP_003536652.1|	-	2.8	8.3	21.7	7.3	7.0	5.0	4.6	4	1	1	5	5	4	0	MerR,	DNA	binding
YlqD	PF11068.3	gi|292656755|ref|YP_003536652.1|	-	3.1	7.8	30.6	1.7	8.7	10.8	3.2	2	1	1	3	3	3	0	YlqD	protein
DUF3450	PF11932.3	gi|292656755|ref|YP_003536652.1|	-	3.7	6.7	28.1	2.4	7.3	6.7	2.9	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3450)
Filament	PF00038.16	gi|292656755|ref|YP_003536652.1|	-	5.7	6.3	35.8	15	4.9	24.8	2.0	1	1	0	1	1	1	0	Intermediate	filament	protein
ATG_C	PF09333.6	gi|292656755|ref|YP_003536652.1|	-	7.8	6.7	8.0	2.7	8.1	0.2	2.9	1	1	2	3	3	3	0	ATG	C	terminal	domain
TPR_MLP1_2	PF07926.7	gi|292656755|ref|YP_003536652.1|	-	7.9	6.2	36.6	0.23	11.2	18.2	2.7	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF948	PF06103.6	gi|292656755|ref|YP_003536652.1|	-	8.3	6.3	10.9	38	4.2	2.2	3.4	1	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DivIC	PF04977.10	gi|292656755|ref|YP_003536652.1|	-	9.2	5.8	30.9	0.52	9.8	4.3	4.1	3	1	0	4	4	4	0	Septum	formation	initiator
MR_MLE_C	PF13378.1	gi|292656757|ref|YP_003536654.1|	-	4.6e-22	78.1	0.5	1.7e-19	69.8	0.2	2.5	2	0	0	2	2	2	2	Enolase	C-terminal	domain-like
MR_MLE	PF01188.16	gi|292656757|ref|YP_003536654.1|	-	2.5e-15	56.7	1.5	4.3e-15	55.9	0.5	1.9	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_N	PF02746.11	gi|292656757|ref|YP_003536654.1|	-	5.6e-15	55.3	0.2	1.1e-14	54.4	0.1	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MAAL_C	PF07476.6	gi|292656757|ref|YP_003536654.1|	-	0.014	14.3	0.0	0.028	13.3	0.0	1.4	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
DHO_dh	PF01180.16	gi|292656757|ref|YP_003536654.1|	-	0.018	13.9	0.0	0.036	13.0	0.0	1.5	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
Enolase_C	PF00113.17	gi|292656757|ref|YP_003536654.1|	-	0.027	13.4	0.0	0.051	12.5	0.0	1.4	1	0	0	1	1	1	0	Enolase,	C-terminal	TIM	barrel	domain
DUF1382	PF07131.6	gi|292656757|ref|YP_003536654.1|	-	0.042	13.9	0.0	0.13	12.4	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1382)
DUF3526	PF12040.3	gi|292656757|ref|YP_003536654.1|	-	0.058	13.5	0.0	0.25	11.4	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3526)
DUF1611	PF07755.6	gi|292656758|ref|YP_003536655.1|	-	4.2e-109	363.8	0.0	4.9e-109	363.6	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1611)
GFO_IDH_MocA	PF01408.17	gi|292656758|ref|YP_003536655.1|	-	0.0041	17.6	0.1	0.026	15.0	0.0	2.2	2	1	1	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
AAA_26	PF13500.1	gi|292656758|ref|YP_003536655.1|	-	0.011	15.2	0.1	3.4	7.2	0.0	2.6	1	1	1	2	2	2	0	AAA	domain
PK_C	PF02887.11	gi|292656758|ref|YP_003536655.1|	-	0.047	13.2	0.0	0.24	10.9	0.0	2.2	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
Tropomyosin	PF00261.15	gi|292656759|ref|YP_003536656.1|	-	0.0035	16.4	5.3	0.0049	15.9	3.7	1.2	1	0	0	1	1	1	1	Tropomyosin
DivIC	PF04977.10	gi|292656759|ref|YP_003536656.1|	-	0.0049	16.3	8.0	0.029	13.8	1.4	2.4	1	1	1	2	2	2	1	Septum	formation	initiator
FadA	PF09403.5	gi|292656759|ref|YP_003536656.1|	-	0.012	15.6	0.9	0.019	14.9	0.6	1.2	1	0	0	1	1	1	0	Adhesion	protein	FadA
WD40_alt	PF14077.1	gi|292656759|ref|YP_003536656.1|	-	0.053	13.1	2.8	0.75	9.4	0.1	2.5	2	0	0	2	2	2	0	Alternative	WD40	repeat	motif
PilJ	PF13675.1	gi|292656759|ref|YP_003536656.1|	-	0.075	13.3	3.7	0.14	12.4	2.1	1.9	2	0	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
IncA	PF04156.9	gi|292656759|ref|YP_003536656.1|	-	0.079	12.5	4.7	0.14	11.7	3.2	1.3	1	0	0	1	1	1	0	IncA	protein
DUF904	PF06005.7	gi|292656759|ref|YP_003536656.1|	-	0.11	12.8	5.2	2.3	8.5	1.5	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
HR1	PF02185.11	gi|292656759|ref|YP_003536656.1|	-	0.17	11.6	1.6	0.39	10.4	0.5	2.0	1	1	1	2	2	2	0	Hr1	repeat
TSC22	PF01166.13	gi|292656759|ref|YP_003536656.1|	-	0.18	11.7	2.1	2.3	8.2	0.2	2.3	2	0	0	2	2	2	0	TSC-22/dip/bun	family
Mnd1	PF03962.10	gi|292656759|ref|YP_003536656.1|	-	0.18	11.4	2.2	0.29	10.7	1.5	1.2	1	0	0	1	1	1	0	Mnd1	family
Striatin	PF08232.7	gi|292656759|ref|YP_003536656.1|	-	0.34	11.2	6.6	2.7	8.2	4.6	2.1	1	1	0	1	1	1	0	Striatin	family
Tropomyosin_1	PF12718.2	gi|292656759|ref|YP_003536656.1|	-	0.44	10.3	8.2	0.82	9.5	5.7	1.3	1	0	0	1	1	1	0	Tropomyosin	like
Atg14	PF10186.4	gi|292656759|ref|YP_003536656.1|	-	0.66	8.8	1.8	1	8.2	1.2	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
bZIP_1	PF00170.16	gi|292656759|ref|YP_003536656.1|	-	0.9	9.5	6.6	16	5.5	0.2	2.4	1	1	1	2	2	2	0	bZIP	transcription	factor
DUF4140	PF13600.1	gi|292656759|ref|YP_003536656.1|	-	1.3	9.5	11.4	4.4	7.7	3.0	2.8	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4200	PF13863.1	gi|292656759|ref|YP_003536656.1|	-	1.8	8.4	6.2	5.8	6.8	4.3	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
DUF4164	PF13747.1	gi|292656759|ref|YP_003536656.1|	-	2.2	8.4	17.5	13	6.0	8.5	3.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4164)
HalX	PF08663.5	gi|292656759|ref|YP_003536656.1|	-	4.9	7.2	16.0	1.4	8.9	2.7	3.2	2	1	1	3	3	3	0	HalX	domain
E3_binding	PF02817.12	gi|292656760|ref|YP_003536657.1|	-	0.09	12.4	0.2	0.14	11.7	0.2	1.3	1	0	0	1	1	1	0	e3	binding	domain
ADH_zinc_N	PF00107.21	gi|292656762|ref|YP_003536659.1|	-	1.1e-39	134.9	0.1	1.8e-39	134.2	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|292656762|ref|YP_003536659.1|	-	2.7e-21	76.7	0.0	6.2e-21	75.6	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|292656762|ref|YP_003536659.1|	-	1.6e-19	69.6	0.0	5.4e-19	67.9	0.0	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
NAD_binding_10	PF13460.1	gi|292656762|ref|YP_003536659.1|	-	4.7e-05	23.4	0.1	6.9e-05	22.9	0.1	1.3	1	0	0	1	1	1	1	NADH(P)-binding
AlaDh_PNT_C	PF01262.16	gi|292656762|ref|YP_003536659.1|	-	0.00012	21.6	0.2	0.00028	20.4	0.1	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Eno-Rase_NADH_b	PF12242.3	gi|292656762|ref|YP_003536659.1|	-	0.0018	18.0	0.3	0.0042	16.8	0.2	1.6	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DapB_N	PF01113.15	gi|292656762|ref|YP_003536659.1|	-	0.0045	16.9	0.5	0.011	15.6	0.4	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|292656762|ref|YP_003536659.1|	-	0.047	14.0	0.3	0.081	13.2	0.2	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.8	gi|292656762|ref|YP_003536659.1|	-	0.06	12.6	0.1	0.091	11.9	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
ACP_syn_III_C	PF08541.5	gi|292656762|ref|YP_003536659.1|	-	0.83	9.7	4.6	0.43	10.6	0.2	2.5	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
TrmB	PF01978.14	gi|292656763|ref|YP_003536660.1|	-	1.9e-05	24.2	0.0	5.8e-05	22.7	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292656763|ref|YP_003536660.1|	-	0.0019	17.8	0.0	0.004	16.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|292656763|ref|YP_003536660.1|	-	0.0026	17.3	0.7	0.0064	16.1	0.2	1.9	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|292656763|ref|YP_003536660.1|	-	0.0067	16.1	2.0	0.012	15.3	0.4	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656763|ref|YP_003536660.1|	-	0.0095	15.5	0.2	0.019	14.5	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292656763|ref|YP_003536660.1|	-	0.02	15.1	0.3	0.063	13.6	0.2	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
GntR	PF00392.16	gi|292656763|ref|YP_003536660.1|	-	0.021	14.2	0.1	0.045	13.1	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.17	gi|292656763|ref|YP_003536660.1|	-	0.028	14.1	0.0	0.056	13.1	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_23	PF13384.1	gi|292656763|ref|YP_003536660.1|	-	0.028	14.0	0.1	0.058	13.0	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|292656763|ref|YP_003536660.1|	-	0.03	14.0	0.1	0.072	12.8	0.0	1.6	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF1803	PF08820.5	gi|292656763|ref|YP_003536660.1|	-	0.18	11.5	0.0	0.34	10.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
MoCF_biosynth	PF00994.19	gi|292656764|ref|YP_003536661.1|	-	9.3e-29	99.6	0.5	1.2e-28	99.3	0.4	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
SBP_bac_5	PF00496.17	gi|292656764|ref|YP_003536661.1|	-	0.039	12.7	0.0	0.051	12.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ILVD_EDD	PF00920.16	gi|292656765|ref|YP_003536662.1|	-	9.7e-212	703.9	1.5	1.1e-211	703.8	1.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
2-Hacid_dh_C	PF02826.14	gi|292656767|ref|YP_003536664.1|	-	7.3e-52	175.0	0.0	9.7e-52	174.6	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|292656767|ref|YP_003536664.1|	-	3.2e-11	42.8	0.0	4e-11	42.5	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|292656767|ref|YP_003536664.1|	-	0.00051	19.9	0.0	0.00079	19.3	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|292656767|ref|YP_003536664.1|	-	0.008	16.5	0.0	0.022	15.1	0.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.7	gi|292656767|ref|YP_003536664.1|	-	0.023	14.0	0.0	0.21	10.9	0.0	2.3	2	1	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
ThiF	PF00899.16	gi|292656767|ref|YP_003536664.1|	-	0.038	13.8	2.9	0.084	12.6	0.2	2.7	4	0	0	4	4	4	0	ThiF	family
TrkA_N	PF02254.13	gi|292656767|ref|YP_003536664.1|	-	0.081	12.9	0.2	2	8.4	0.1	3.0	3	1	0	3	3	3	0	TrkA-N	domain
DAO	PF01266.19	gi|292656769|ref|YP_003536666.1|	-	8.7e-12	44.5	4.4	2.8e-05	23.1	1.2	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|292656769|ref|YP_003536666.1|	-	7.3e-08	31.8	2.0	0.00012	21.3	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|292656769|ref|YP_003536666.1|	-	1e-07	30.9	0.9	4.2e-05	22.3	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_oxidored	PF12831.2	gi|292656769|ref|YP_003536666.1|	-	3.4e-06	26.4	1.4	6.2e-06	25.5	0.9	1.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292656769|ref|YP_003536666.1|	-	5.9e-06	26.2	3.4	9.5e-05	22.3	2.4	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292656769|ref|YP_003536666.1|	-	1.3e-05	23.8	2.8	0.00086	17.8	2.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|292656769|ref|YP_003536666.1|	-	2e-05	23.6	4.2	4e-05	22.6	2.9	1.5	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|292656769|ref|YP_003536666.1|	-	4.3e-05	23.4	1.0	0.0012	18.8	0.1	2.9	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|292656769|ref|YP_003536666.1|	-	0.00015	21.5	3.9	0.014	15.1	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|292656769|ref|YP_003536666.1|	-	0.00037	19.4	2.0	0.0025	16.7	1.5	1.9	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|292656769|ref|YP_003536666.1|	-	0.00099	18.1	2.1	0.11	11.3	0.6	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
Thi4	PF01946.12	gi|292656769|ref|YP_003536666.1|	-	0.0064	15.6	0.2	0.013	14.5	0.2	1.5	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.16	gi|292656769|ref|YP_003536666.1|	-	0.044	13.3	0.8	0.093	12.2	0.5	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.22	gi|292656769|ref|YP_003536666.1|	-	0.11	12.9	0.1	1	9.7	0.1	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292656769|ref|YP_003536666.1|	-	0.12	12.4	1.5	3	7.8	0.7	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
TAT_signal	PF10518.4	gi|292656770|ref|YP_003536667.1|	-	0.029	14.3	4.4	0.067	13.2	3.1	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Lge1	PF11488.3	gi|292656770|ref|YP_003536667.1|	-	0.14	12.4	0.0	0.2	11.8	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulatory	protein	LGE1
Polysacc_synt_3	PF13440.1	gi|292656771|ref|YP_003536668.1|	-	9.2e-16	58.0	20.9	9.2e-16	58.0	14.5	2.7	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.12	gi|292656771|ref|YP_003536668.1|	-	1.5e-11	44.1	4.2	1.5e-11	44.1	2.9	2.3	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.1	gi|292656771|ref|YP_003536668.1|	-	6.2e-11	42.2	18.5	6.2e-11	42.2	12.8	4.3	2	1	2	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
Tom7	PF08038.7	gi|292656771|ref|YP_003536668.1|	-	0.22	10.9	1.1	0.55	9.7	0.8	1.6	1	0	0	1	1	1	0	TOM7	family
Cytochrom_B_N_2	PF13631.1	gi|292656773|ref|YP_003536670.1|	-	3.9e-41	140.6	6.1	3.9e-41	140.6	4.2	2.6	3	0	0	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.12	gi|292656773|ref|YP_003536670.1|	-	2.1e-06	27.8	0.8	2.1e-06	27.8	0.6	3.3	3	1	0	3	3	3	1	Cytochrome	b(C-terminal)/b6/petD
DUF4405	PF14358.1	gi|292656773|ref|YP_003536670.1|	-	1.1	9.4	16.3	9.1	6.5	8.6	3.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
Rieske	PF00355.21	gi|292656774|ref|YP_003536671.1|	-	6e-14	51.3	0.0	1.1e-13	50.6	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.4	gi|292656774|ref|YP_003536671.1|	-	0.012	15.5	0.9	0.012	15.5	0.7	2.3	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Copper-bind	PF00127.15	gi|292656776|ref|YP_003536673.1|	-	2e-13	50.3	0.0	3e-13	49.8	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
PKD	PF00801.15	gi|292656776|ref|YP_003536673.1|	-	0.78	9.5	4.3	2	8.2	2.2	2.3	1	1	0	1	1	1	0	PKD	domain
Nramp	PF01566.13	gi|292656777|ref|YP_003536674.1|	-	3.3e-61	207.0	34.7	3.3e-61	207.0	24.0	1.4	2	0	0	2	2	2	1	Natural	resistance-associated	macrophage	protein
PAS_9	PF13426.1	gi|292656778|ref|YP_003536675.1|	-	1.6e-24	86.2	0.0	5.8e-13	49.1	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|292656778|ref|YP_003536675.1|	-	1.7e-23	82.7	6.5	1.1e-13	51.1	0.1	3.2	4	0	0	4	4	3	2	PAS	fold
HATPase_c	PF02518.21	gi|292656778|ref|YP_003536675.1|	-	2.4e-21	75.5	0.1	1.1e-20	73.4	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.19	gi|292656778|ref|YP_003536675.1|	-	9.8e-19	67.2	0.1	5.2e-12	45.5	0.1	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.1	gi|292656778|ref|YP_003536675.1|	-	1.2e-12	47.1	0.1	2.7e-08	33.3	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.1	gi|292656778|ref|YP_003536675.1|	-	3.5e-07	30.0	0.9	9.6e-07	28.6	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|292656778|ref|YP_003536675.1|	-	2.2e-06	27.3	0.0	4e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.20	gi|292656778|ref|YP_003536675.1|	-	2.7e-06	27.2	0.3	2.7e-06	27.2	0.2	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.6	gi|292656778|ref|YP_003536675.1|	-	6.6e-06	26.1	0.0	0.13	12.4	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.19	gi|292656778|ref|YP_003536675.1|	-	7.2e-05	22.7	0.9	0.00023	21.1	0.0	2.3	3	0	0	3	3	3	1	Response	regulator	receiver	domain
PAS_7	PF12860.2	gi|292656778|ref|YP_003536675.1|	-	0.0025	17.7	3.8	0.46	10.5	0.2	4.4	3	2	0	3	3	3	1	PAS	fold
SPOB_a	PF14689.1	gi|292656778|ref|YP_003536675.1|	-	0.011	15.2	0.2	0.035	13.6	0.1	2.0	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF336	PF03928.9	gi|292656778|ref|YP_003536675.1|	-	0.017	14.9	0.8	8.3	6.2	0.0	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF336)
Phage_Gp23	PF10669.4	gi|292656778|ref|YP_003536675.1|	-	0.046	13.8	0.4	1.5	8.9	0.0	2.5	2	0	0	2	2	2	0	Protein	gp23	(Bacteriophage	A118)
SusD	PF07980.6	gi|292656778|ref|YP_003536675.1|	-	0.13	11.7	0.5	0.3	10.5	0.4	1.5	1	0	0	1	1	1	0	SusD	family
Tautomerase	PF01361.16	gi|292656779|ref|YP_003536676.1|	-	1.9e-10	40.1	0.1	5.6e-08	32.2	0.0	2.1	2	0	0	2	2	2	2	Tautomerase	enzyme
Tautomerase_2	PF14552.1	gi|292656779|ref|YP_003536676.1|	-	5.8e-05	23.0	0.0	0.00011	22.1	0.0	1.6	1	1	0	1	1	1	1	Tautomerase	enzyme
MIF	PF01187.13	gi|292656779|ref|YP_003536676.1|	-	0.0039	17.2	0.0	0.0047	17.0	0.0	1.0	1	0	0	1	1	1	1	Macrophage	migration	inhibitory	factor	(MIF)
Aminotran_5	PF00266.14	gi|292656780|ref|YP_003536677.1|	-	2.4e-30	105.5	0.0	2.7e-30	105.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|292656780|ref|YP_003536677.1|	-	0.0079	15.1	0.0	0.013	14.4	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Glyoxalase	PF00903.20	gi|292656781|ref|YP_003536678.1|	-	1.5e-23	83.1	0.0	3.4e-23	82.0	0.0	1.8	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|292656781|ref|YP_003536678.1|	-	1.1e-09	38.8	1.3	0.00051	20.6	0.1	2.3	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|292656781|ref|YP_003536678.1|	-	7.1e-08	32.4	0.0	0.039	13.9	0.0	3.3	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Aldo_ket_red	PF00248.16	gi|292656782|ref|YP_003536679.1|	-	2.7e-30	105.1	0.0	3.2e-30	104.9	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_11	PF08241.7	gi|292656783|ref|YP_003536680.1|	-	9.9e-12	45.2	0.0	1.5e-11	44.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292656783|ref|YP_003536680.1|	-	5e-07	30.0	0.0	1.3e-06	28.7	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|292656783|ref|YP_003536680.1|	-	1.2e-05	25.2	2.7	1.7e-05	24.8	1.5	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292656783|ref|YP_003536680.1|	-	1.5e-05	25.5	0.1	3.7e-05	24.2	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292656783|ref|YP_003536680.1|	-	0.0025	16.8	0.0	0.0034	16.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.7	gi|292656783|ref|YP_003536680.1|	-	0.0078	16.6	0.0	0.012	16.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292656783|ref|YP_003536680.1|	-	0.023	13.8	0.0	0.035	13.2	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_24	PF13578.1	gi|292656783|ref|YP_003536680.1|	-	0.032	15.0	0.2	0.09	13.6	0.1	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
HpcH_HpaI	PF03328.9	gi|292656784|ref|YP_003536681.1|	-	1.1e-33	115.9	0.0	1.5e-33	115.5	0.0	1.1	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
Phos_pyr_kin	PF08543.7	gi|292656785|ref|YP_003536682.1|	-	2.4e-85	285.6	1.6	2.7e-85	285.4	1.1	1.0	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.19	gi|292656785|ref|YP_003536682.1|	-	7.8e-13	48.2	2.2	1e-12	47.8	1.5	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.12	gi|292656785|ref|YP_003536682.1|	-	0.002	17.4	0.3	0.0027	17.0	0.2	1.3	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.10	gi|292656785|ref|YP_003536682.1|	-	0.0025	17.0	1.0	1.3	8.1	0.1	2.2	2	0	0	2	2	2	2	Hydroxyethylthiazole	kinase	family
MoCF_biosynth	PF00994.19	gi|292656785|ref|YP_003536682.1|	-	0.013	14.8	0.5	0.024	14.0	0.4	1.5	1	0	0	1	1	1	0	Probable	molybdopterin	binding	domain
HK	PF02110.10	gi|292656786|ref|YP_003536683.1|	-	1.4e-65	220.9	4.5	1.6e-65	220.7	3.1	1.0	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|292656786|ref|YP_003536683.1|	-	3.7e-05	23.0	0.1	5.6e-05	22.4	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Carb_kinase	PF01256.12	gi|292656786|ref|YP_003536683.1|	-	0.0016	17.7	1.1	0.0016	17.7	0.8	1.7	2	0	0	2	2	2	1	Carbohydrate	kinase
TMP-TENI	PF02581.12	gi|292656787|ref|YP_003536684.1|	-	4e-61	205.2	3.6	4.8e-61	205.0	2.5	1.1	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
ThiG	PF05690.9	gi|292656787|ref|YP_003536684.1|	-	5.1e-06	25.7	2.3	5.1e-06	25.7	1.6	2.1	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|292656787|ref|YP_003536684.1|	-	0.00027	19.8	0.5	0.0011	17.8	0.0	1.8	1	1	1	2	2	2	1	Dihydrouridine	synthase	(Dus)
NanE	PF04131.9	gi|292656787|ref|YP_003536684.1|	-	0.0008	18.4	0.7	0.0013	17.7	0.5	1.5	1	0	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
NMO	PF03060.10	gi|292656787|ref|YP_003536684.1|	-	0.0088	15.2	11.1	0.016	14.4	7.7	1.3	1	1	0	1	1	1	1	Nitronate	monooxygenase
FlpD	PF02662.11	gi|292656787|ref|YP_003536684.1|	-	0.023	14.3	0.1	0.054	13.1	0.1	1.6	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Ribul_P_3_epim	PF00834.14	gi|292656787|ref|YP_003536684.1|	-	2.4	7.2	4.9	0.76	8.8	0.5	2.2	3	0	0	3	3	3	0	Ribulose-phosphate	3	epimerase	family
Flavodoxin_5	PF12724.2	gi|292656788|ref|YP_003536685.1|	-	2.1e-34	118.5	0.0	2.5e-34	118.3	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.20	gi|292656788|ref|YP_003536685.1|	-	5.8e-05	23.1	0.9	0.00011	22.1	0.5	1.8	1	1	1	2	2	2	1	Flavodoxin
Flavodoxin_3	PF12641.2	gi|292656788|ref|YP_003536685.1|	-	0.002	17.5	0.0	0.0033	16.8	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_4	PF12682.2	gi|292656788|ref|YP_003536685.1|	-	0.097	12.0	0.0	3.4	7.0	0.0	2.4	1	1	1	2	2	2	0	Flavodoxin
DHFR_1	PF00186.14	gi|292656788|ref|YP_003536685.1|	-	0.097	12.2	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Dihydrofolate	reductase
FAD-oxidase_C	PF02913.14	gi|292656789|ref|YP_003536686.1|	-	3.8e-56	190.1	0.4	8.5e-56	189.0	0.3	1.6	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|292656789|ref|YP_003536686.1|	-	2.2e-40	137.3	1.4	3.6e-40	136.6	0.2	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|292656789|ref|YP_003536686.1|	-	6.8e-09	35.9	5.3	1.3e-08	35.0	3.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|292656789|ref|YP_003536686.1|	-	1e-08	35.0	6.1	2.2e-08	33.9	4.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|292656789|ref|YP_003536686.1|	-	1.7e-07	31.1	0.5	7.3e-05	22.6	0.0	3.2	4	0	0	4	4	3	1	Cysteine-rich	domain
Fer4_7	PF12838.2	gi|292656789|ref|YP_003536686.1|	-	5e-05	23.6	5.8	0.00011	22.4	4.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|292656789|ref|YP_003536686.1|	-	0.00019	21.7	8.3	0.00067	20.0	4.4	2.5	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292656789|ref|YP_003536686.1|	-	0.00073	19.3	3.1	0.04	13.7	0.3	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|292656789|ref|YP_003536686.1|	-	0.001	18.8	8.9	0.13	12.2	0.7	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|292656789|ref|YP_003536686.1|	-	0.0097	16.1	8.7	0.039	14.2	6.2	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|292656789|ref|YP_003536686.1|	-	0.018	14.6	12.6	0.19	11.3	2.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|292656789|ref|YP_003536686.1|	-	0.018	14.7	11.0	0.15	11.8	1.2	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|292656789|ref|YP_003536686.1|	-	0.81	10.1	12.1	1	9.8	2.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|292656789|ref|YP_003536686.1|	-	1	9.3	11.6	2.5	8.1	2.0	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|292656789|ref|YP_003536686.1|	-	2.4	8.9	6.6	7.1	7.4	4.6	1.8	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Aminotran_5	PF00266.14	gi|292656790|ref|YP_003536687.1|	-	1.2e-31	109.7	0.0	1.4e-31	109.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|292656790|ref|YP_003536687.1|	-	9.1e-06	24.1	0.0	1.4e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
B12-binding	PF02310.14	gi|292656790|ref|YP_003536687.1|	-	0.052	13.4	0.2	0.45	10.4	0.0	2.5	3	0	0	3	3	3	0	B12	binding	domain
Nramp	PF01566.13	gi|292656793|ref|YP_003536690.1|	-	1.3e-112	376.2	28.1	1.6e-112	375.9	19.4	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
Histidinol_dh	PF00815.15	gi|292656794|ref|YP_003536691.1|	-	2.8e-152	507.1	4.4	3.3e-152	506.8	3.0	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
DUF3708	PF12501.3	gi|292656794|ref|YP_003536691.1|	-	7.3	6.4	11.0	14	5.4	0.2	2.5	2	0	0	2	2	2	0	Phosphate	ATP-binding	cassette	transporter
Fe-S_biosyn	PF01521.15	gi|292656795|ref|YP_003536692.1|	-	8.7e-21	73.9	0.0	9.9e-21	73.7	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
DNA_RNApol_7kD	PF03604.8	gi|292656796|ref|YP_003536693.1|	-	0.0036	16.7	1.2	0.0057	16.0	0.8	1.3	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
Nudix_N_2	PF14803.1	gi|292656796|ref|YP_003536693.1|	-	0.0049	16.5	0.3	1.2	8.9	0.1	2.4	3	0	0	3	3	3	2	Nudix	N-terminal
zinc_ribbon_6	PF14599.1	gi|292656796|ref|YP_003536693.1|	-	0.065	13.0	3.5	3.7	7.4	0.1	2.3	1	1	1	2	2	2	0	Zinc-ribbon
Mcm10	PF09332.6	gi|292656796|ref|YP_003536693.1|	-	0.12	11.6	0.1	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Mcm10	replication	factor
5TM-5TMR_LYT	PF07694.7	gi|292656798|ref|YP_003536695.1|	-	0.15	11.3	15.5	0.037	13.3	2.8	2.9	2	1	2	4	4	4	0	5TMR	of	5TMR-LYT
DUF2238	PF09997.4	gi|292656799|ref|YP_003536696.1|	-	0.0023	17.3	1.2	0.0023	17.3	0.9	1.7	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2238)
DUF4234	PF14018.1	gi|292656799|ref|YP_003536696.1|	-	5.6	6.7	7.1	1.8	8.3	2.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4234)
MarR_2	PF12802.2	gi|292656800|ref|YP_003536697.1|	-	1.5e-06	27.7	0.8	3e-06	26.7	0.6	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|292656800|ref|YP_003536697.1|	-	9.1e-06	25.2	1.4	1.1e-05	25.0	0.3	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|292656800|ref|YP_003536697.1|	-	0.00012	21.8	0.4	0.00028	20.6	0.3	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656800|ref|YP_003536697.1|	-	0.00012	21.6	1.0	0.0002	20.9	0.7	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|292656800|ref|YP_003536697.1|	-	0.0003	21.0	0.1	0.00066	19.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|292656800|ref|YP_003536697.1|	-	0.00035	20.2	0.1	0.00069	19.2	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|292656800|ref|YP_003536697.1|	-	0.0004	20.1	0.0	0.00064	19.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|292656800|ref|YP_003536697.1|	-	0.00053	19.5	1.0	0.0011	18.4	0.7	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|292656800|ref|YP_003536697.1|	-	0.00074	18.8	1.1	0.0014	18.0	0.7	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HemN_C	PF06969.11	gi|292656800|ref|YP_003536697.1|	-	0.0032	17.5	0.0	0.011	15.7	0.0	1.9	2	0	0	2	2	2	1	HemN	C-terminal	domain
HTH_23	PF13384.1	gi|292656800|ref|YP_003536697.1|	-	0.005	16.4	0.3	0.01	15.4	0.2	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
DUF1724	PF08350.5	gi|292656800|ref|YP_003536697.1|	-	0.0052	16.2	0.0	0.0087	15.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
MarR	PF01047.17	gi|292656800|ref|YP_003536697.1|	-	0.0094	15.6	0.1	0.018	14.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.7	gi|292656800|ref|YP_003536697.1|	-	0.011	15.1	0.5	0.02	14.4	0.3	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292656800|ref|YP_003536697.1|	-	0.047	13.4	0.2	0.096	12.4	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|292656800|ref|YP_003536697.1|	-	0.048	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Dodecin	PF07311.7	gi|292656801|ref|YP_003536698.1|	-	2.8e-22	78.4	1.0	3.1e-22	78.3	0.7	1.0	1	0	0	1	1	1	1	Dodecin
5_nucleotid_C	PF02872.13	gi|292656802|ref|YP_003536699.1|	-	1e-27	97.0	0.0	1.7e-27	96.3	0.0	1.3	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.23	gi|292656802|ref|YP_003536699.1|	-	4.6e-08	32.7	0.0	6.3e-08	32.2	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|292656802|ref|YP_003536699.1|	-	0.031	14.1	1.7	0.079	12.7	0.6	2.1	2	1	0	2	2	2	0	Calcineurin-like	phosphoesterase	superfamily	domain
Usp	PF00582.21	gi|292656803|ref|YP_003536700.1|	-	6.7e-12	45.7	2.6	1.1e-11	45.1	1.8	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|292656803|ref|YP_003536700.1|	-	0.095	12.4	0.3	0.64	9.7	0.2	2.1	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
MS_channel	PF00924.13	gi|292656804|ref|YP_003536701.1|	-	6.4e-31	107.2	0.2	9e-31	106.8	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
PAC2	PF09754.4	gi|292656805|ref|YP_003536702.1|	-	1.6e-05	24.8	0.0	1.8e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	PAC2	family
PAC2	PF09754.4	gi|292656806|ref|YP_003536703.1|	-	5.6e-19	68.8	0.0	6.7e-19	68.6	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
Regulator_TrmB	PF11495.3	gi|292656807|ref|YP_003536704.1|	-	2.9e-75	252.2	1.3	3.3e-75	252.0	0.4	1.4	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|292656807|ref|YP_003536704.1|	-	3.9e-21	74.5	0.0	8.6e-21	73.4	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292656807|ref|YP_003536704.1|	-	1.7e-06	27.5	0.1	4.3e-06	26.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|292656807|ref|YP_003536704.1|	-	3.2e-06	26.8	0.0	1.1e-05	25.1	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656807|ref|YP_003536704.1|	-	0.00014	21.4	0.1	0.00032	20.2	0.1	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656807|ref|YP_003536704.1|	-	0.00024	20.4	0.0	0.0011	18.3	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_CodY	PF08222.6	gi|292656807|ref|YP_003536704.1|	-	0.0018	17.5	0.0	0.0056	15.9	0.0	1.8	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
Rrf2	PF02082.15	gi|292656807|ref|YP_003536704.1|	-	0.0021	18.1	0.0	0.0048	16.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|292656807|ref|YP_003536704.1|	-	0.0042	16.7	0.0	0.013	15.1	0.0	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.4	gi|292656807|ref|YP_003536704.1|	-	0.026	14.4	0.0	0.052	13.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_9	PF08221.6	gi|292656807|ref|YP_003536704.1|	-	0.043	13.7	0.0	0.21	11.5	0.0	2.0	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|292656807|ref|YP_003536704.1|	-	0.047	12.9	0.2	2.3	7.5	0.0	2.9	2	1	0	2	2	2	0	Sigma-70,	region	4
MarR	PF01047.17	gi|292656807|ref|YP_003536704.1|	-	0.062	13.0	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
BssS	PF13991.1	gi|292656807|ref|YP_003536704.1|	-	0.072	12.8	0.0	0.3	10.8	0.0	2.0	2	0	0	2	2	2	0	BssS	protein	family
HTH_37	PF13744.1	gi|292656807|ref|YP_003536704.1|	-	0.14	12.0	0.1	2.4	8.0	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656807|ref|YP_003536704.1|	-	0.2	11.3	3.2	18	5.0	0.0	3.3	4	0	0	4	4	3	0	HTH	domain
TF_Zn_Ribbon	PF08271.7	gi|292656808|ref|YP_003536705.1|	-	0.086	12.1	10.2	1.1	8.6	0.2	3.3	3	0	0	3	3	3	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|292656808|ref|YP_003536705.1|	-	0.19	11.4	4.8	5	6.8	0.7	2.6	1	1	1	2	2	2	0	Nudix	N-terminal
NMD3	PF04981.8	gi|292656808|ref|YP_003536705.1|	-	0.66	9.0	2.3	1.1	8.3	1.6	1.3	1	0	0	1	1	1	0	NMD3	family
zf-TFIIB	PF13453.1	gi|292656808|ref|YP_003536705.1|	-	1.1	8.5	4.3	4.5	6.5	3.0	2.0	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
GFO_IDH_MocA	PF01408.17	gi|292656809|ref|YP_003536706.1|	-	1.9e-27	96.1	0.0	3.5e-27	95.3	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|292656809|ref|YP_003536706.1|	-	7.3e-10	38.6	0.1	1e-08	34.9	0.0	2.4	1	1	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
2-Hacid_dh_C	PF02826.14	gi|292656809|ref|YP_003536706.1|	-	5.5e-07	28.9	0.0	1.3e-06	27.7	0.0	1.6	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|292656809|ref|YP_003536706.1|	-	2.9e-06	27.6	0.2	1e-05	25.8	0.0	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.7	gi|292656809|ref|YP_003536706.1|	-	2.1e-05	23.9	0.0	4.2e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|292656809|ref|YP_003536706.1|	-	8.6e-05	22.4	0.0	0.00017	21.5	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
CoA_binding	PF02629.14	gi|292656809|ref|YP_003536706.1|	-	0.00042	20.7	0.0	0.00085	19.7	0.0	1.5	1	0	0	1	1	1	1	CoA	binding	domain
Semialdhyde_dh	PF01118.19	gi|292656809|ref|YP_003536706.1|	-	0.0013	18.9	0.0	0.0035	17.6	0.0	1.7	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.16	gi|292656809|ref|YP_003536706.1|	-	0.011	15.6	1.8	0.49	10.2	0.4	2.3	1	1	1	2	2	2	0	ThiF	family
ABC_tran	PF00005.22	gi|292656811|ref|YP_003536708.1|	-	1.2e-31	109.8	0.0	2.1e-31	109.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656811|ref|YP_003536708.1|	-	1.4e-10	41.6	0.0	8.3e-06	25.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|292656811|ref|YP_003536708.1|	-	2.1e-06	27.1	0.2	1.2e-05	24.6	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|292656811|ref|YP_003536708.1|	-	4.1e-05	22.8	0.0	0.0033	16.5	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
TOBE	PF03459.12	gi|292656811|ref|YP_003536708.1|	-	0.0002	21.3	0.1	2.9	8.0	0.0	4.1	3	1	1	4	4	4	1	TOBE	domain
TOBE_2	PF08402.5	gi|292656811|ref|YP_003536708.1|	-	0.00041	20.2	0.2	0.011	15.7	0.1	2.6	1	1	0	1	1	1	1	TOBE	domain
AAA_29	PF13555.1	gi|292656811|ref|YP_003536708.1|	-	0.00066	19.1	0.0	0.0022	17.4	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|292656811|ref|YP_003536708.1|	-	0.002	17.5	0.1	0.022	14.1	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|292656811|ref|YP_003536708.1|	-	0.0021	18.1	0.1	0.021	14.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|292656811|ref|YP_003536708.1|	-	0.0023	18.7	1.1	0.012	16.4	0.8	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|292656811|ref|YP_003536708.1|	-	0.003	17.5	0.1	0.0077	16.2	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.10	gi|292656811|ref|YP_003536708.1|	-	0.0044	15.7	0.0	0.0054	15.4	0.0	1.1	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_23	PF13476.1	gi|292656811|ref|YP_003536708.1|	-	0.0066	16.7	0.0	0.0098	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|292656811|ref|YP_003536708.1|	-	0.0089	15.2	0.0	0.017	14.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|292656811|ref|YP_003536708.1|	-	0.012	15.7	0.7	0.069	13.3	0.5	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|292656811|ref|YP_003536708.1|	-	0.013	15.2	0.0	0.029	14.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|292656811|ref|YP_003536708.1|	-	0.026	13.9	0.2	0.047	13.1	0.1	1.5	1	1	0	1	1	1	0	AAA-like	domain
AAA_33	PF13671.1	gi|292656811|ref|YP_003536708.1|	-	0.03	14.1	0.2	0.18	11.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|292656811|ref|YP_003536708.1|	-	0.033	14.3	0.0	0.081	13.1	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.1	gi|292656811|ref|YP_003536708.1|	-	0.036	13.6	0.1	1	8.8	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|292656811|ref|YP_003536708.1|	-	0.11	12.4	0.0	0.64	9.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.17	gi|292656812|ref|YP_003536709.1|	-	2.3e-10	40.3	18.6	2.3e-10	40.3	12.9	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|292656813|ref|YP_003536710.1|	-	2.1e-17	63.2	18.5	2.1e-17	63.2	12.8	2.7	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.1	gi|292656814|ref|YP_003536711.1|	-	2.8e-14	53.5	0.4	6.2e-14	52.3	0.3	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|292656814|ref|YP_003536711.1|	-	7.7e-12	45.5	0.5	1.3e-11	44.8	0.4	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|292656814|ref|YP_003536711.1|	-	0.00051	19.8	2.5	0.00051	19.8	1.7	1.9	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Aldo_ket_red	PF00248.16	gi|292656815|ref|YP_003536712.1|	-	2e-81	272.9	0.0	2.3e-81	272.7	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
TMEM61	PF15105.1	gi|292656815|ref|YP_003536712.1|	-	0.00089	18.8	0.0	0.0026	17.3	0.0	1.7	2	0	0	2	2	2	1	TMEM61	protein	family
DNA_primase_S	PF01896.14	gi|292656816|ref|YP_003536713.1|	-	6.5e-23	81.1	0.0	1.1e-22	80.4	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
DUF2762	PF10960.3	gi|292656817|ref|YP_003536714.1|	-	0.63	9.7	4.5	3.9	7.2	0.5	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2762)
AhpC-TSA	PF00578.16	gi|292656818|ref|YP_003536715.1|	-	4.6e-37	126.4	0.0	5.4e-37	126.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|292656818|ref|YP_003536715.1|	-	3.7e-24	84.9	0.0	4.2e-24	84.7	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.7	gi|292656818|ref|YP_003536715.1|	-	0.0039	16.6	0.0	0.0041	16.5	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
SCO1-SenC	PF02630.9	gi|292656818|ref|YP_003536715.1|	-	0.02	14.4	0.0	0.054	13.1	0.0	1.7	1	1	0	1	1	1	0	SCO1/SenC
AAA	PF00004.24	gi|292656819|ref|YP_003536716.1|	-	8.9e-100	330.0	0.9	8.6e-49	165.1	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|292656819|ref|YP_003536716.1|	-	1.3e-22	79.5	0.0	5.7e-22	77.4	0.0	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|292656819|ref|YP_003536716.1|	-	6.6e-19	68.4	0.1	2.3e-08	34.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|292656819|ref|YP_003536716.1|	-	1.3e-16	60.3	0.0	2e-08	33.5	0.0	2.7	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|292656819|ref|YP_003536716.1|	-	5e-16	59.2	0.0	1.4e-08	34.9	0.0	3.2	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|292656819|ref|YP_003536716.1|	-	1.1e-12	48.2	0.1	0.00074	19.6	0.0	3.8	2	2	0	2	2	2	2	AAA	domain
CDC48_2	PF02933.12	gi|292656819|ref|YP_003536716.1|	-	3.5e-12	45.7	0.3	8.1e-12	44.6	0.2	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_17	PF13207.1	gi|292656819|ref|YP_003536716.1|	-	1.7e-11	45.0	2.2	0.00015	22.5	0.0	3.6	3	1	0	3	3	2	2	AAA	domain
AAA_5	PF07728.9	gi|292656819|ref|YP_003536716.1|	-	2e-11	43.7	0.9	0.00014	21.5	0.0	4.2	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|292656819|ref|YP_003536716.1|	-	2.6e-11	43.5	0.0	0.0002	21.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|292656819|ref|YP_003536716.1|	-	4.6e-11	42.1	0.3	0.00073	18.6	0.0	3.4	3	0	0	3	3	3	2	Zeta	toxin
TIP49	PF06068.8	gi|292656819|ref|YP_003536716.1|	-	1.6e-10	40.2	0.0	0.00011	21.0	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|292656819|ref|YP_003536716.1|	-	2.3e-10	40.5	0.0	0.00043	20.1	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|292656819|ref|YP_003536716.1|	-	6.2e-10	38.6	0.0	0.00071	19.2	0.0	3.0	2	0	0	2	2	2	2	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|292656819|ref|YP_003536716.1|	-	1e-08	34.8	0.0	0.0011	18.3	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.17	gi|292656819|ref|YP_003536716.1|	-	7.5e-08	32.5	0.0	0.022	14.9	0.0	2.7	2	1	0	2	2	2	2	RNA	helicase
AAA_3	PF07726.6	gi|292656819|ref|YP_003536716.1|	-	2.9e-07	30.1	0.0	0.0094	15.5	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|292656819|ref|YP_003536716.1|	-	3.4e-07	30.6	0.0	0.012	15.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|292656819|ref|YP_003536716.1|	-	4.2e-07	29.3	0.4	0.013	14.6	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.1	gi|292656819|ref|YP_003536716.1|	-	1e-06	28.3	6.9	0.83	9.0	0.0	4.6	2	2	2	4	4	4	3	AAA	domain
AAA_28	PF13521.1	gi|292656819|ref|YP_003536716.1|	-	1.3e-06	28.4	0.0	0.03	14.2	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.7	gi|292656819|ref|YP_003536716.1|	-	3e-06	27.0	0.1	0.57	9.8	0.0	4.1	3	1	0	4	4	4	2	NACHT	domain
DUF815	PF05673.8	gi|292656819|ref|YP_003536716.1|	-	3.5e-06	26.1	0.0	0.0076	15.1	0.0	2.7	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.11	gi|292656819|ref|YP_003536716.1|	-	5.3e-06	25.7	0.1	0.05	12.8	0.0	2.6	2	0	0	2	2	2	2	PhoH-like	protein
DUF2075	PF09848.4	gi|292656819|ref|YP_003536716.1|	-	6.5e-06	25.3	0.0	0.032	13.2	0.0	2.5	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.21	gi|292656819|ref|YP_003536716.1|	-	7.1e-06	25.6	0.0	0.15	11.5	0.0	3.1	3	1	0	3	3	3	2	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|292656819|ref|YP_003536716.1|	-	9.1e-06	24.7	0.0	0.097	11.5	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
ABC_tran	PF00005.22	gi|292656819|ref|YP_003536716.1|	-	1.7e-05	25.1	0.0	0.33	11.2	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
KaiC	PF06745.8	gi|292656819|ref|YP_003536716.1|	-	2.3e-05	23.6	0.2	0.8	8.7	0.0	3.6	2	1	1	3	3	3	2	KaiC
Sigma54_activ_2	PF14532.1	gi|292656819|ref|YP_003536716.1|	-	2.7e-05	24.2	0.0	0.22	11.5	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|292656819|ref|YP_003536716.1|	-	3.1e-05	23.7	0.0	0.54	9.9	0.0	3.4	2	2	1	3	3	3	2	Archaeal	ATPase
NTPase_1	PF03266.10	gi|292656819|ref|YP_003536716.1|	-	6.7e-05	22.6	1.0	0.83	9.3	0.0	3.9	2	2	1	3	3	3	2	NTPase
AAA_11	PF13086.1	gi|292656819|ref|YP_003536716.1|	-	7.2e-05	22.4	0.0	0.19	11.2	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_30	PF13604.1	gi|292656819|ref|YP_003536716.1|	-	0.0001	21.9	0.0	0.51	9.8	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.13	gi|292656819|ref|YP_003536716.1|	-	0.00011	21.9	0.0	0.05	13.2	0.0	2.6	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_24	PF13479.1	gi|292656819|ref|YP_003536716.1|	-	0.00013	21.5	0.0	0.065	12.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.12	gi|292656819|ref|YP_003536716.1|	-	0.0002	20.3	0.0	0.54	9.0	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
UPF0079	PF02367.12	gi|292656819|ref|YP_003536716.1|	-	0.00067	19.2	0.0	0.87	9.2	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
ATP-synt_ab	PF00006.20	gi|292656819|ref|YP_003536716.1|	-	0.0018	17.8	0.0	0.57	9.6	0.0	2.5	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SE	PF00437.15	gi|292656819|ref|YP_003536716.1|	-	0.0018	17.2	0.0	0.92	8.3	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
SKI	PF01202.17	gi|292656819|ref|YP_003536716.1|	-	0.0023	17.8	0.0	2.1	8.2	0.0	2.6	2	0	0	2	2	2	1	Shikimate	kinase
ResIII	PF04851.10	gi|292656819|ref|YP_003536716.1|	-	0.0058	16.4	0.0	2.6	7.8	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Cytidylate_kin2	PF13189.1	gi|292656819|ref|YP_003536716.1|	-	0.0089	15.9	0.0	0.6	9.9	0.0	2.5	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
KAP_NTPase	PF07693.9	gi|292656819|ref|YP_003536716.1|	-	0.014	14.3	0.1	1.2	8.0	0.0	2.8	2	2	1	3	3	3	0	KAP	family	P-loop	domain
AFG1_ATPase	PF03969.11	gi|292656819|ref|YP_003536716.1|	-	0.025	13.4	0.0	3.1	6.4	0.0	2.5	2	0	0	2	2	2	0	AFG1-like	ATPase
KTI12	PF08433.5	gi|292656819|ref|YP_003536716.1|	-	0.046	12.9	0.0	8.3	5.5	0.0	2.5	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
DEAD	PF00270.24	gi|292656819|ref|YP_003536716.1|	-	0.055	12.9	1.3	19	4.6	0.0	3.4	2	2	2	4	4	4	0	DEAD/DEAH	box	helicase
Torsin	PF06309.6	gi|292656819|ref|YP_003536716.1|	-	0.063	13.1	0.0	2.8	7.8	0.0	2.3	2	0	0	2	2	2	0	Torsin
Zot	PF05707.7	gi|292656819|ref|YP_003536716.1|	-	0.071	12.5	0.3	23	4.4	0.1	3.4	2	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Viral_helicase1	PF01443.13	gi|292656819|ref|YP_003536716.1|	-	0.22	11.0	0.0	16	4.9	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
HSP20	PF00011.16	gi|292656820|ref|YP_003536717.1|	-	0.0041	16.9	0.3	0.28	11.0	0.2	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|292656820|ref|YP_003536717.1|	-	0.01	15.4	0.5	0.011	15.3	0.3	1.0	1	0	0	1	1	1	0	GvpH
Abhydrolase_6	PF12697.2	gi|292656821|ref|YP_003536718.1|	-	2.4e-35	122.4	6.7	2.8e-35	122.2	4.6	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|292656821|ref|YP_003536718.1|	-	1e-19	70.7	1.1	5.7e-19	68.3	0.8	1.9	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292656821|ref|YP_003536718.1|	-	1.9e-18	66.9	0.4	4e-17	62.5	0.3	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.5	gi|292656821|ref|YP_003536718.1|	-	4e-05	23.4	0.0	9.1e-05	22.2	0.0	1.6	1	0	0	1	1	1	1	TAP-like	protein
Hydrolase_4	PF12146.3	gi|292656821|ref|YP_003536718.1|	-	0.0022	17.8	1.4	0.0052	16.6	1.0	1.8	1	1	0	1	1	1	1	Putative	lysophospholipase
FSH1	PF03959.8	gi|292656821|ref|YP_003536718.1|	-	0.017	14.5	0.0	0.049	13.0	0.0	2.0	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
Esterase	PF00756.15	gi|292656821|ref|YP_003536718.1|	-	0.033	13.6	0.2	0.081	12.3	0.2	1.7	1	1	0	1	1	1	0	Putative	esterase
Abhydrolase_8	PF06259.7	gi|292656821|ref|YP_003536718.1|	-	0.056	12.9	0.9	0.088	12.2	0.6	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase
Pantoate_transf	PF02548.10	gi|292656822|ref|YP_003536719.1|	-	2.2e-98	328.5	0.9	2.5e-98	328.3	0.6	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|292656822|ref|YP_003536719.1|	-	3.9e-06	26.2	4.8	6.3e-05	22.3	3.3	2.5	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
DUF1628	PF07790.6	gi|292656823|ref|YP_003536720.1|	-	4.3e-15	56.2	0.5	7.9e-14	52.1	0.2	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
PDGLE	PF13190.1	gi|292656823|ref|YP_003536720.1|	-	0.22	11.2	1.3	15	5.3	0.0	2.5	3	0	0	3	3	3	0	PDGLE	domain
IF-2B	PF01008.12	gi|292656825|ref|YP_003536722.1|	-	1.3e-43	149.0	0.1	1.5e-43	148.8	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
GFO_IDH_MocA	PF01408.17	gi|292656826|ref|YP_003536723.1|	-	1.6e-17	64.1	0.0	2.5e-17	63.4	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|292656826|ref|YP_003536723.1|	-	4.6e-12	45.7	0.8	1.7e-11	43.9	0.2	2.3	2	1	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
ox_reductase_C	PF08635.5	gi|292656826|ref|YP_003536723.1|	-	0.018	14.4	0.0	0.074	12.4	0.0	1.9	1	1	0	1	1	1	0	Putative	oxidoreductase	C	terminal
AP_endonuc_2	PF01261.19	gi|292656827|ref|YP_003536724.1|	-	5.2e-30	104.3	1.4	8e-30	103.7	1.0	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.7	gi|292656827|ref|YP_003536724.1|	-	3.4e-18	64.9	0.0	6.9e-18	63.9	0.0	1.6	1	0	0	1	1	1	1	AP	endonuclease	family	2	C	terminus
DUF3122	PF11320.3	gi|292656827|ref|YP_003536724.1|	-	0.031	14.1	0.0	0.11	12.4	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3122)
Acetyltransf_7	PF13508.1	gi|292656828|ref|YP_003536725.1|	-	3e-13	49.7	0.2	6.5e-13	48.6	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292656828|ref|YP_003536725.1|	-	1.3e-12	47.5	0.0	3e-12	46.4	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656828|ref|YP_003536725.1|	-	4.4e-12	46.1	0.1	6.6e-12	45.5	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656828|ref|YP_003536725.1|	-	1.2e-11	44.1	0.0	2.2e-11	43.3	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|292656828|ref|YP_003536725.1|	-	5.2e-05	23.1	0.3	7.2e-05	22.7	0.2	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656828|ref|YP_003536725.1|	-	0.00056	19.7	0.1	0.012	15.5	0.0	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|292656828|ref|YP_003536725.1|	-	0.0013	18.6	0.0	0.0022	17.9	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Archease	PF01951.11	gi|292656829|ref|YP_003536726.1|	-	4.9e-28	97.7	0.0	5.5e-28	97.6	0.0	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
DEDD_Tnp_IS110	PF01548.12	gi|292656829|ref|YP_003536726.1|	-	0.0043	16.7	0.0	0.0079	15.8	0.0	1.4	1	1	1	2	2	2	1	Transposase
DUF2793	PF10983.3	gi|292656829|ref|YP_003536726.1|	-	0.048	13.4	0.2	0.24	11.2	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2793)
DoxX	PF07681.7	gi|292656830|ref|YP_003536727.1|	-	1.2e-07	32.0	8.0	1.2e-07	32.0	5.6	4.0	3	1	0	3	3	3	2	DoxX
DoxD	PF04173.8	gi|292656830|ref|YP_003536727.1|	-	0.079	12.6	9.9	5.5	6.6	0.7	3.7	2	1	1	3	3	3	0	TQO	small	subunit	DoxD
RtcB	PF01139.12	gi|292656831|ref|YP_003536728.1|	-	1.7e-146	488.5	0.0	1.9e-146	488.3	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DUF4131	PF13567.1	gi|292656832|ref|YP_003536729.1|	-	0.09	12.1	1.1	0.24	10.8	0.1	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF2665	PF11654.3	gi|292656832|ref|YP_003536729.1|	-	0.23	11.0	1.2	0.83	9.2	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2665)
DUF1212	PF06738.7	gi|292656832|ref|YP_003536729.1|	-	1.9	7.9	9.2	0.11	12.0	1.8	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1212)
IncA	PF04156.9	gi|292656832|ref|YP_003536729.1|	-	2	7.9	7.7	27	4.2	4.8	2.1	2	0	0	2	2	2	0	IncA	protein
MitoNEET_N	PF10660.4	gi|292656832|ref|YP_003536729.1|	-	3.4	7.6	5.3	4.6	7.1	0.1	2.3	2	0	0	2	2	2	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
zf-ribbon_3	PF13248.1	gi|292656833|ref|YP_003536730.1|	-	0.026	13.7	1.1	0.049	12.8	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292656833|ref|YP_003536730.1|	-	0.048	13.1	0.2	0.21	11.1	0.0	2.0	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF2296	PF10058.4	gi|292656833|ref|YP_003536730.1|	-	0.049	13.3	0.1	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Nudix_N_2	PF14803.1	gi|292656833|ref|YP_003536730.1|	-	0.077	12.6	0.4	0.49	10.1	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
DUF1610	PF07754.6	gi|292656833|ref|YP_003536730.1|	-	0.12	12.5	2.6	0.71	10.0	0.7	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.1	gi|292656833|ref|YP_003536730.1|	-	0.13	11.7	0.2	0.13	11.7	0.1	2.1	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|292656833|ref|YP_003536730.1|	-	0.26	10.6	1.6	0.98	8.7	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
RRN7	PF11781.3	gi|292656833|ref|YP_003536730.1|	-	0.28	10.6	1.7	0.99	8.9	0.1	2.4	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
HAD_2	PF13419.1	gi|292656834|ref|YP_003536731.1|	-	6e-14	52.6	2.9	4.6e-13	49.7	2.0	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292656834|ref|YP_003536731.1|	-	7e-06	25.6	0.0	1.6e-05	24.4	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|292656834|ref|YP_003536731.1|	-	8.2e-05	23.1	0.4	0.038	14.3	0.0	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|292656834|ref|YP_003536731.1|	-	0.0016	18.6	1.3	0.0022	18.2	0.9	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Acyl-CoA_dh_1	PF00441.19	gi|292656835|ref|YP_003536732.1|	-	5e-52	175.9	1.1	7.6e-52	175.4	0.8	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|292656835|ref|YP_003536732.1|	-	2.4e-33	115.0	0.5	6.4e-33	113.7	0.4	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|292656835|ref|YP_003536732.1|	-	5.9e-24	84.8	2.5	1.2e-23	83.8	1.8	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|292656835|ref|YP_003536732.1|	-	2.8e-18	65.1	0.0	7e-18	63.8	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
tRNA_SAD	PF07973.9	gi|292656836|ref|YP_003536733.1|	-	2.1e-12	46.7	0.1	3.5e-12	46.0	0.0	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.14	gi|292656836|ref|YP_003536733.1|	-	8.5e-08	30.9	0.1	1.2e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.14	gi|292656836|ref|YP_003536733.1|	-	4.1e-05	23.1	4.0	0.00017	21.2	2.8	2.1	1	0	0	1	1	1	1	DHHA1	domain
HTH_3	PF01381.17	gi|292656837|ref|YP_003536734.1|	-	6.8e-05	22.6	0.2	0.0001	22.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_25	PF13413.1	gi|292656837|ref|YP_003536734.1|	-	0.00012	21.6	1.3	0.00022	20.7	0.6	1.6	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|292656837|ref|YP_003536734.1|	-	0.00064	19.8	1.7	0.00064	19.8	1.2	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|292656837|ref|YP_003536734.1|	-	0.0064	16.5	0.0	0.0099	15.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.7	gi|292656837|ref|YP_003536734.1|	-	0.0077	15.9	0.1	0.018	14.8	0.1	1.6	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
DUF420	PF04238.7	gi|292656838|ref|YP_003536735.1|	-	2.2e-38	131.2	11.1	3.3e-38	130.6	7.7	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.4	gi|292656838|ref|YP_003536735.1|	-	5.2e-05	23.3	3.7	5.2e-05	23.3	2.5	2.6	1	1	2	3	3	3	1	Predicted	membrane	protein	(DUF2306)
DUF4149	PF13664.1	gi|292656838|ref|YP_003536735.1|	-	0.49	10.4	13.2	0.27	11.3	1.5	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
DUF1240	PF06836.7	gi|292656838|ref|YP_003536735.1|	-	2.4	8.4	11.0	0.045	13.9	1.9	2.2	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1240)
DUF165	PF02592.10	gi|292656838|ref|YP_003536735.1|	-	6.4	6.9	10.8	6.5	6.9	0.4	2.8	1	1	2	3	3	3	0	Uncharacterized	ACR,	YhhQ	family	COG1738
GATase_7	PF13537.1	gi|292656839|ref|YP_003536736.1|	-	4.4e-23	81.3	0.0	8.4e-23	80.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|292656839|ref|YP_003536736.1|	-	1.2e-22	80.3	0.0	2.3e-22	79.3	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|292656839|ref|YP_003536736.1|	-	5.2e-22	78.0	0.0	7e-09	34.8	0.0	3.2	2	1	1	3	3	3	3	Glutamine	amidotransferases	class-II
Pribosyltran	PF00156.22	gi|292656839|ref|YP_003536736.1|	-	2.7e-10	40.0	0.0	8.6e-10	38.4	0.0	1.8	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.1	gi|292656839|ref|YP_003536736.1|	-	4e-05	22.4	0.0	6.5e-05	21.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Ribosomal_L37e	PF01907.14	gi|292656840|ref|YP_003536737.1|	-	7.2e-26	89.7	14.2	7.8e-26	89.6	9.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DZR	PF12773.2	gi|292656840|ref|YP_003536737.1|	-	0.00098	18.8	2.4	0.0012	18.5	1.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|292656840|ref|YP_003536737.1|	-	0.015	14.4	4.4	0.043	13.0	2.9	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_6	PF14599.1	gi|292656840|ref|YP_003536737.1|	-	0.047	13.4	1.9	0.055	13.2	1.3	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zf-RanBP	PF00641.13	gi|292656840|ref|YP_003536737.1|	-	0.084	11.9	3.2	1.1	8.4	0.1	2.2	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
HypA	PF01155.14	gi|292656840|ref|YP_003536737.1|	-	0.14	11.8	2.1	0.16	11.6	1.5	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|292656840|ref|YP_003536737.1|	-	0.15	11.6	5.7	0.62	9.6	3.8	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.1	gi|292656840|ref|YP_003536737.1|	-	0.21	11.1	3.5	0.23	10.9	2.4	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Ribosomal_L32p	PF01783.18	gi|292656840|ref|YP_003536737.1|	-	0.34	11.1	8.9	0.49	10.6	5.9	1.5	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
FYVE_2	PF02318.11	gi|292656840|ref|YP_003536737.1|	-	0.34	10.8	4.6	0.4	10.6	3.2	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Baculo_ME53	PF06061.6	gi|292656840|ref|YP_003536737.1|	-	0.63	8.9	4.4	0.64	8.9	3.1	1.0	1	0	0	1	1	1	0	Baculoviridae	ME53
Cas_CXXC_CXXC	PF09706.5	gi|292656840|ref|YP_003536737.1|	-	0.63	10.2	3.7	0.74	10.0	2.5	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
OrfB_Zn_ribbon	PF07282.6	gi|292656840|ref|YP_003536737.1|	-	1.1	8.9	7.6	1.9	8.1	5.2	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-piccolo	PF05715.8	gi|292656840|ref|YP_003536737.1|	-	1.3	9.1	4.5	4.7	7.3	3.1	1.8	1	1	0	1	1	1	0	Piccolo	Zn-finger
RNA_POL_M_15KD	PF02150.11	gi|292656840|ref|YP_003536737.1|	-	1.9	8.2	6.0	4.1	7.1	0.4	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_3	PF13878.1	gi|292656840|ref|YP_003536737.1|	-	2	8.0	8.5	6.1	6.4	0.7	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-HIT	PF04438.11	gi|292656840|ref|YP_003536737.1|	-	2.3	7.9	7.6	7.7	6.2	0.7	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
TFIIS_C	PF01096.13	gi|292656840|ref|YP_003536737.1|	-	4.7	6.9	6.4	4.5	6.9	0.4	2.6	2	1	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
LSM	PF01423.17	gi|292656841|ref|YP_003536738.1|	-	8.6e-15	54.0	0.0	1e-14	53.8	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|292656841|ref|YP_003536738.1|	-	2.3e-06	27.4	0.0	3.1e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Lactamase_B	PF00753.22	gi|292656842|ref|YP_003536739.1|	-	7.2e-12	45.3	3.7	2.2e-11	43.7	2.4	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292656842|ref|YP_003536739.1|	-	4.2e-07	29.7	1.2	3.5e-06	26.7	0.1	2.2	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|292656842|ref|YP_003536739.1|	-	0.00091	18.9	0.6	0.00091	18.9	0.4	2.2	3	0	0	3	3	3	1	RNA-metabolising	metallo-beta-lactamase
DUF1413	PF07205.6	gi|292656842|ref|YP_003536739.1|	-	0.056	12.9	0.0	2.7	7.6	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1413)
polyprenyl_synt	PF00348.12	gi|292656843|ref|YP_003536740.1|	-	1.3e-58	197.8	1.0	1.7e-58	197.5	0.7	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
tRNA-synt_1c	PF00749.16	gi|292656844|ref|YP_003536741.1|	-	5.3e-59	199.4	0.0	6.9e-59	199.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|292656844|ref|YP_003536741.1|	-	1.8e-14	53.7	0.0	5.7e-14	52.1	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Cyclase	PF04199.8	gi|292656845|ref|YP_003536742.1|	-	5.5e-27	94.5	0.0	6.9e-27	94.2	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
DUF456	PF04306.8	gi|292656846|ref|YP_003536743.1|	-	2.2e-27	95.8	23.6	2.2e-27	95.8	16.4	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF456)
UbiA	PF01040.13	gi|292656846|ref|YP_003536743.1|	-	0.0027	16.9	22.5	0.0034	16.6	15.6	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Fer4_7	PF12838.2	gi|292656847|ref|YP_003536744.1|	-	1.7e-12	47.4	22.5	1.4e-07	31.8	5.1	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|292656847|ref|YP_003536744.1|	-	6.7e-12	44.4	12.4	5e-08	32.2	2.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|292656847|ref|YP_003536744.1|	-	8.5e-10	38.7	4.8	1.2e-09	38.2	3.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|292656847|ref|YP_003536744.1|	-	1.2e-08	34.4	13.9	1.4e-06	27.8	3.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|292656847|ref|YP_003536744.1|	-	3.4e-07	29.9	18.6	0.00015	21.5	5.6	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|292656847|ref|YP_003536744.1|	-	6.7e-07	29.0	9.0	2e-06	27.5	6.3	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|292656847|ref|YP_003536744.1|	-	1e-06	28.6	4.8	1.5e-05	24.8	4.0	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|292656847|ref|YP_003536744.1|	-	2.2e-06	27.2	9.8	0.00059	19.6	2.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|292656847|ref|YP_003536744.1|	-	4.5e-06	26.9	0.8	0.031	14.6	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|292656847|ref|YP_003536744.1|	-	6e-06	26.9	5.5	7.9e-05	23.3	0.7	2.4	3	0	0	3	3	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|292656847|ref|YP_003536744.1|	-	3.9e-05	23.6	8.9	0.00037	20.5	2.4	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|292656847|ref|YP_003536744.1|	-	4.8e-05	23.6	3.8	0.00084	19.7	1.0	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|292656847|ref|YP_003536744.1|	-	0.0019	18.6	12.7	0.0026	18.2	3.6	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|292656847|ref|YP_003536744.1|	-	0.015	15.6	13.6	0.11	12.9	9.5	2.3	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|292656847|ref|YP_003536744.1|	-	0.25	11.9	15.4	3.6	8.2	4.0	2.5	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
ETF	PF01012.16	gi|292656848|ref|YP_003536745.1|	-	2.4e-29	102.1	0.0	3.7e-29	101.5	0.0	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|292656849|ref|YP_003536746.1|	-	6e-24	83.4	1.0	9.7e-24	82.8	0.2	1.8	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|292656849|ref|YP_003536746.1|	-	1.3e-18	67.2	0.0	3.8e-18	65.7	0.0	1.8	1	1	0	1	1	1	1	Electron	transfer	flavoprotein	domain
DAO	PF01266.19	gi|292656850|ref|YP_003536747.1|	-	1.5e-09	37.2	0.6	0.00016	20.6	0.0	2.5	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|292656850|ref|YP_003536747.1|	-	2.2e-09	36.8	2.8	0.00045	19.3	0.4	2.8	2	1	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|292656850|ref|YP_003536747.1|	-	1.7e-06	27.3	0.9	4.7e-06	25.9	0.2	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|292656850|ref|YP_003536747.1|	-	0.00027	20.8	2.5	0.00054	19.9	0.3	2.7	3	0	0	3	3	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|292656850|ref|YP_003536747.1|	-	0.0006	19.7	0.0	0.0023	17.8	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|292656850|ref|YP_003536747.1|	-	0.0006	18.9	1.4	0.00069	18.7	0.3	1.6	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.19	gi|292656850|ref|YP_003536747.1|	-	0.0016	17.3	7.1	0.007	15.2	2.4	2.2	1	1	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|292656850|ref|YP_003536747.1|	-	0.0029	16.1	1.8	0.0044	15.5	0.8	1.6	2	0	0	2	2	2	1	HI0933-like	protein
Fer4_7	PF12838.2	gi|292656850|ref|YP_003536747.1|	-	0.022	15.1	2.0	0.042	14.2	1.4	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Pyr_redox_3	PF13738.1	gi|292656850|ref|YP_003536747.1|	-	0.03	14.3	0.0	0.053	13.5	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|292656850|ref|YP_003536747.1|	-	0.046	14.1	2.7	1.8	9.0	0.7	2.8	3	0	0	3	3	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF1905	PF08922.6	gi|292656850|ref|YP_003536747.1|	-	0.055	13.0	0.0	0.18	11.4	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
Fer4_10	PF13237.1	gi|292656850|ref|YP_003536747.1|	-	0.2	11.4	1.3	0.37	10.6	0.9	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|292656850|ref|YP_003536747.1|	-	0.21	11.8	1.4	0.4	10.9	0.9	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
GIDA	PF01134.17	gi|292656850|ref|YP_003536747.1|	-	0.38	9.5	5.4	0.27	10.0	2.0	1.9	3	0	0	3	3	3	0	Glucose	inhibited	division	protein	A
Fer4_6	PF12837.2	gi|292656850|ref|YP_003536747.1|	-	5.6	7.0	6.5	0.5	10.3	0.5	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Acetyltransf_4	PF13420.1	gi|292656852|ref|YP_003536749.1|	-	4e-15	56.0	0.0	5.7e-15	55.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292656852|ref|YP_003536749.1|	-	1.1e-14	54.2	0.0	1.9e-14	53.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656852|ref|YP_003536749.1|	-	1.3e-12	47.8	0.0	2e-12	47.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656852|ref|YP_003536749.1|	-	1.1e-07	31.8	0.0	2.8e-07	30.5	0.0	1.7	2	0	0	2	2	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656852|ref|YP_003536749.1|	-	1.4e-06	28.5	0.0	2.9e-06	27.5	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656852|ref|YP_003536749.1|	-	0.00026	20.8	0.0	0.00069	19.4	0.0	1.8	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|292656852|ref|YP_003536749.1|	-	0.00028	20.7	0.0	0.00047	20.0	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FeoC	PF09012.5	gi|292656852|ref|YP_003536749.1|	-	0.0033	17.0	0.0	0.007	16.0	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
Acetyltransf_8	PF13523.1	gi|292656852|ref|YP_003536749.1|	-	0.0049	16.7	0.3	0.017	15.0	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Fe_dep_repress	PF01325.14	gi|292656852|ref|YP_003536749.1|	-	0.0069	16.3	0.0	0.068	13.1	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Acetyltransf_6	PF13480.1	gi|292656852|ref|YP_003536749.1|	-	0.013	15.4	0.5	0.032	14.1	0.0	2.0	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
LexA_DNA_bind	PF01726.11	gi|292656852|ref|YP_003536749.1|	-	0.015	14.8	0.0	0.037	13.5	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_20	PF12840.2	gi|292656852|ref|YP_003536749.1|	-	0.024	14.4	0.0	0.079	12.7	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
FR47	PF08445.5	gi|292656852|ref|YP_003536749.1|	-	0.078	12.7	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	FR47-like	protein
HTH_27	PF13463.1	gi|292656852|ref|YP_003536749.1|	-	0.11	12.7	0.1	0.78	10.1	0.0	2.3	3	0	0	3	3	2	0	Winged	helix	DNA-binding	domain
GNAT_acetyltr_2	PF13718.1	gi|292656854|ref|YP_003536751.1|	-	4.5e-49	166.4	0.0	2.9e-48	163.8	0.0	2.0	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
Helicase_RecD	PF05127.9	gi|292656854|ref|YP_003536751.1|	-	4e-48	163.3	0.0	6.2e-48	162.7	0.0	1.3	1	0	0	1	1	1	1	Helicase
DUF1726	PF08351.6	gi|292656854|ref|YP_003536751.1|	-	2.7e-22	78.2	0.0	2.1e-21	75.4	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
tRNA_bind_2	PF13725.1	gi|292656854|ref|YP_003536751.1|	-	1.2e-11	44.5	0.0	8.9e-11	41.7	0.0	2.2	2	0	0	2	2	2	1	Possible	tRNA	binding	domain
AAA_30	PF13604.1	gi|292656854|ref|YP_003536751.1|	-	5.6e-06	26.0	1.9	1.5e-05	24.6	1.3	1.7	1	0	0	1	1	1	1	AAA	domain
Acetyltransf_7	PF13508.1	gi|292656854|ref|YP_003536751.1|	-	2.7e-05	24.2	0.0	5.3e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656854|ref|YP_003536751.1|	-	0.0023	17.7	0.0	0.0065	16.3	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656854|ref|YP_003536751.1|	-	0.072	13.2	0.0	3.9	7.6	0.0	3.2	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
DEAD	PF00270.24	gi|292656854|ref|YP_003536751.1|	-	0.15	11.5	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
Ribosomal_L7Ae	PF01248.21	gi|292656855|ref|YP_003536752.1|	-	2.6e-25	87.7	0.0	3.1e-25	87.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|292656855|ref|YP_003536752.1|	-	0.0011	18.7	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
DUF1269	PF06897.7	gi|292656855|ref|YP_003536752.1|	-	0.013	15.4	2.5	0.15	12.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
Ribosomal_S28e	PF01200.13	gi|292656856|ref|YP_003536753.1|	-	3.2e-29	100.4	0.7	3.6e-29	100.3	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.15	gi|292656857|ref|YP_003536754.1|	-	5.3e-24	83.8	0.0	5.7e-24	83.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
NDK	PF00334.14	gi|292656858|ref|YP_003536755.1|	-	3e-56	188.9	0.0	3.4e-56	188.7	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Meth_synt_2	PF01717.13	gi|292656860|ref|YP_003536757.1|	-	3.9e-77	259.4	0.0	4.6e-77	259.1	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|292656860|ref|YP_003536757.1|	-	7.4e-20	71.4	0.0	3.3e-19	69.3	0.0	1.8	2	0	0	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|292656860|ref|YP_003536757.1|	-	1.2e-05	24.3	0.0	1.8e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Meth_synt_1	PF08267.7	gi|292656861|ref|YP_003536758.1|	-	1.5e-24	86.8	0.0	6e-22	78.2	0.0	2.1	1	1	1	2	2	2	2	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.13	gi|292656861|ref|YP_003536758.1|	-	6.3e-12	45.0	0.0	7.7e-12	44.8	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Methyltransf_26	PF13659.1	gi|292656862|ref|YP_003536759.1|	-	4.1e-19	68.7	0.2	5.8e-19	68.2	0.2	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292656862|ref|YP_003536759.1|	-	5.3e-15	55.1	0.0	6.8e-15	54.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|292656862|ref|YP_003536759.1|	-	6.9e-11	42.7	0.0	1.1e-10	42.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|292656862|ref|YP_003536759.1|	-	2.7e-10	40.6	0.0	1.6e-07	31.7	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292656862|ref|YP_003536759.1|	-	3.2e-07	30.7	0.0	2.8e-05	24.5	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292656862|ref|YP_003536759.1|	-	7.5e-07	28.8	0.0	1.1e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292656862|ref|YP_003536759.1|	-	8.5e-07	28.8	0.0	6.6e-05	22.6	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|292656862|ref|YP_003536759.1|	-	5.4e-05	23.4	0.0	0.00014	22.1	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292656862|ref|YP_003536759.1|	-	0.00071	18.7	0.0	0.26	10.3	0.0	2.1	2	0	0	2	2	2	2	ubiE/COQ5	methyltransferase	family
DUF1269	PF06897.7	gi|292656862|ref|YP_003536759.1|	-	0.0058	16.6	0.1	0.065	13.2	0.0	2.2	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1269)
UPF0146	PF03686.8	gi|292656862|ref|YP_003536759.1|	-	0.012	15.4	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
PrmA	PF06325.8	gi|292656862|ref|YP_003536759.1|	-	0.019	14.1	0.1	0.046	12.8	0.1	1.6	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.1	gi|292656862|ref|YP_003536759.1|	-	0.025	14.2	0.0	0.034	13.8	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.13	gi|292656862|ref|YP_003536759.1|	-	0.025	14.1	0.0	0.29	10.7	0.0	2.0	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.10	gi|292656862|ref|YP_003536759.1|	-	0.052	12.9	0.0	0.07	12.5	0.0	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_24	PF13578.1	gi|292656862|ref|YP_003536759.1|	-	0.093	13.5	0.0	0.15	12.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.15	gi|292656862|ref|YP_003536759.1|	-	0.1	11.6	0.0	0.13	11.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
PCMT	PF01135.14	gi|292656862|ref|YP_003536759.1|	-	0.11	12.0	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MS_channel	PF00924.13	gi|292656863|ref|YP_003536760.1|	-	3.5e-47	160.4	0.1	3.5e-47	160.4	0.0	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
RrnaAD	PF00398.15	gi|292656864|ref|YP_003536761.1|	-	8.2e-49	165.9	0.0	8.9e-49	165.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|292656864|ref|YP_003536761.1|	-	7.9e-08	32.3	0.0	1.4e-07	31.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292656864|ref|YP_003536761.1|	-	0.00049	20.6	0.0	0.00094	19.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|292656864|ref|YP_003536761.1|	-	0.015	14.6	0.0	0.022	14.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|292656864|ref|YP_003536761.1|	-	0.043	14.1	0.0	0.096	13.0	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292656864|ref|YP_003536761.1|	-	0.054	13.9	0.0	0.13	12.7	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
DUF655	PF04919.7	gi|292656865|ref|YP_003536762.1|	-	1.9e-61	206.9	0.1	2.2e-61	206.7	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_3	PF12836.2	gi|292656865|ref|YP_003536762.1|	-	5.3e-08	32.6	0.1	1.5e-07	31.2	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_6	PF14579.1	gi|292656865|ref|YP_003536762.1|	-	0.00021	21.2	0.0	0.00061	19.7	0.0	1.7	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|292656865|ref|YP_003536762.1|	-	0.00055	20.0	0.1	0.0035	17.4	0.0	2.1	1	1	1	2	2	2	2	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|292656865|ref|YP_003536762.1|	-	0.012	15.2	0.0	0.058	13.1	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
FKBP_C	PF00254.23	gi|292656865|ref|YP_003536762.1|	-	0.099	12.6	0.0	0.32	11.0	0.0	1.8	2	0	0	2	2	2	0	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
HHH_8	PF14716.1	gi|292656865|ref|YP_003536762.1|	-	0.12	12.6	0.0	0.28	11.3	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
RNA_pol_Rpb4	PF03874.11	gi|292656866|ref|YP_003536763.1|	-	4.4e-17	62.1	0.8	5e-17	61.9	0.5	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
FliG_N	PF14842.1	gi|292656866|ref|YP_003536763.1|	-	0.014	15.5	1.3	0.056	13.5	0.0	2.4	2	1	0	2	2	2	0	FliG	N-terminal	domain
DUF1128	PF06569.6	gi|292656866|ref|YP_003536763.1|	-	0.095	12.4	0.9	0.48	10.1	0.3	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1128)
Prp19_bind	PF06991.6	gi|292656866|ref|YP_003536763.1|	-	0.19	10.9	3.0	0.2	10.9	2.1	1.1	1	0	0	1	1	1	0	Splicing	factor,	Prp19-binding	domain
Gluconate_2-dh3	PF13618.1	gi|292656866|ref|YP_003536763.1|	-	0.38	10.9	2.3	1.7	8.8	1.5	2.1	1	1	1	2	2	2	0	Gluconate	2-dehydrogenase	subunit	3
Ribosomal_L21e	PF01157.13	gi|292656867|ref|YP_003536764.1|	-	3.4e-31	106.9	0.1	3.7e-31	106.8	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
Myosin_N	PF02736.14	gi|292656867|ref|YP_003536764.1|	-	0.063	12.9	1.4	0.11	12.1	0.9	1.5	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
Cys_Met_Meta_PP	PF01053.15	gi|292656868|ref|YP_003536765.1|	-	4.4e-152	505.8	0.0	4.9e-152	505.6	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|292656868|ref|YP_003536765.1|	-	0.00015	20.6	0.0	0.00023	19.9	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.6	gi|292656868|ref|YP_003536765.1|	-	0.00026	19.4	0.0	0.00034	19.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	gamma-lyase
DegT_DnrJ_EryC1	PF01041.12	gi|292656868|ref|YP_003536765.1|	-	0.0012	17.9	0.1	0.0025	16.9	0.0	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DUF543	PF04418.7	gi|292656869|ref|YP_003536766.1|	-	0.009	15.9	0.9	1.2	9.1	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF543)
RseC_MucC	PF04246.7	gi|292656869|ref|YP_003536766.1|	-	0.054	13.0	0.0	0.058	12.9	0.0	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF2407_C	PF13373.1	gi|292656869|ref|YP_003536766.1|	-	0.39	10.6	3.6	6.5	6.6	0.0	2.0	1	1	1	2	2	2	0	DUF2407	C-terminal	domain
EF1_GNE	PF00736.14	gi|292656870|ref|YP_003536767.1|	-	1.7e-21	75.7	0.2	1.8e-21	75.6	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.6	gi|292656871|ref|YP_003536768.1|	-	1.5e-10	40.9	13.8	3.6e-05	23.7	0.9	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
DZR	PF12773.2	gi|292656871|ref|YP_003536768.1|	-	0.0033	17.2	12.8	0.7	9.7	8.9	2.3	1	1	0	1	1	1	1	Double	zinc	ribbon
C1_3	PF07649.7	gi|292656871|ref|YP_003536768.1|	-	0.0037	17.2	9.8	0.019	14.9	1.2	2.2	2	0	0	2	2	2	1	C1-like	domain
zf-Mss51	PF13824.1	gi|292656871|ref|YP_003536768.1|	-	0.0088	15.8	13.9	0.64	9.9	1.7	3.1	1	1	1	2	2	2	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
OrfB_Zn_ribbon	PF07282.6	gi|292656871|ref|YP_003536768.1|	-	0.017	14.7	11.4	0.094	12.3	4.8	2.4	1	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF2039	PF10217.4	gi|292656871|ref|YP_003536768.1|	-	0.028	14.4	7.0	0.045	13.7	4.9	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
PolC_DP2	PF03833.8	gi|292656871|ref|YP_003536768.1|	-	0.031	11.9	6.0	0.031	11.9	4.2	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zinc_ribbon_2	PF13240.1	gi|292656871|ref|YP_003536768.1|	-	0.034	13.6	15.7	0.56	9.7	3.1	4.0	3	1	1	4	4	4	0	zinc-ribbon	domain
DUF2296	PF10058.4	gi|292656871|ref|YP_003536768.1|	-	0.034	13.8	7.6	4	7.2	0.0	3.6	3	1	0	3	3	3	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
FYVE_2	PF02318.11	gi|292656871|ref|YP_003536768.1|	-	0.058	13.2	7.6	0.063	13.1	5.2	1.0	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Sgf11	PF08209.6	gi|292656871|ref|YP_003536768.1|	-	0.06	12.6	0.5	0.06	12.6	0.3	3.8	2	1	2	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
zf-UBP	PF02148.14	gi|292656871|ref|YP_003536768.1|	-	0.064	13.3	1.4	0.064	13.3	1.0	2.5	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
Zn_Tnp_IS91	PF14319.1	gi|292656871|ref|YP_003536768.1|	-	0.09	12.2	10.1	0.11	12.0	7.0	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Ribosomal_L37ae	PF01780.14	gi|292656871|ref|YP_003536768.1|	-	0.13	12.1	8.3	0.3	10.9	1.7	2.4	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
zf-C3HC4_3	PF13920.1	gi|292656871|ref|YP_003536768.1|	-	0.14	11.8	11.9	0.066	12.8	2.1	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C2H2	PF00096.21	gi|292656871|ref|YP_003536768.1|	-	0.2	12.0	17.2	2.9	8.4	0.3	4.1	3	1	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-HIT	PF04438.11	gi|292656871|ref|YP_003536768.1|	-	0.24	11.0	14.3	3.6	7.3	3.1	2.8	1	1	1	2	2	2	0	HIT	zinc	finger
C1_1	PF00130.17	gi|292656871|ref|YP_003536768.1|	-	0.25	11.0	11.2	0.2	11.3	0.8	2.2	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L34e	PF01199.13	gi|292656871|ref|YP_003536768.1|	-	0.27	11.4	3.8	6.2	7.1	0.1	2.3	1	1	1	2	2	2	0	Ribosomal	protein	L34e
Zn-ribbon_8	PF09723.5	gi|292656871|ref|YP_003536768.1|	-	0.3	11.0	17.4	0.36	10.8	8.4	2.9	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-RING_5	PF14634.1	gi|292656871|ref|YP_003536768.1|	-	0.39	10.4	11.7	1.6	8.5	1.1	2.3	2	0	0	2	2	2	0	zinc-RING	finger	domain
zinc-ribbons_6	PF07191.7	gi|292656871|ref|YP_003536768.1|	-	0.44	10.3	11.7	2.1	8.2	4.7	2.2	1	1	1	2	2	2	0	zinc-ribbons
PhnA_Zn_Ribbon	PF08274.7	gi|292656871|ref|YP_003536768.1|	-	0.46	10.3	0.2	0.46	10.3	0.2	3.4	2	1	1	3	3	2	0	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|292656871|ref|YP_003536768.1|	-	0.48	9.6	14.4	5.7	6.2	2.7	3.8	2	1	0	3	3	3	0	zinc-ribbon	domain
YhfH	PF14149.1	gi|292656871|ref|YP_003536768.1|	-	0.53	10.1	14.9	8.1	6.3	0.1	3.5	2	1	1	3	3	3	0	YhfH-like	protein
zf-H2C2_2	PF13465.1	gi|292656871|ref|YP_003536768.1|	-	0.56	10.6	16.6	2.9	8.3	0.5	4.0	2	1	2	4	4	4	0	Zinc-finger	double	domain
NMDAR2_C	PF10565.4	gi|292656871|ref|YP_003536768.1|	-	0.59	8.7	8.5	0.63	8.6	5.9	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
NMD3	PF04981.8	gi|292656871|ref|YP_003536768.1|	-	0.75	8.8	9.0	0.85	8.6	6.2	1.0	1	0	0	1	1	1	0	NMD3	family
Zn_Tnp_IS1595	PF12760.2	gi|292656871|ref|YP_003536768.1|	-	1	9.2	18.6	72	3.3	0.3	3.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-tcix	PF14952.1	gi|292656871|ref|YP_003536768.1|	-	1.3	8.4	14.7	6.2	6.2	0.0	3.6	2	1	1	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
RNHCP	PF12647.2	gi|292656871|ref|YP_003536768.1|	-	1.4	8.8	11.6	2.4	8.0	4.0	2.2	1	1	1	2	2	2	0	RNHCP	domain
SprT-like	PF10263.4	gi|292656871|ref|YP_003536768.1|	-	1.5	8.4	7.5	5.1	6.7	5.2	1.7	1	1	0	1	1	1	0	SprT-like	family
IBR	PF01485.16	gi|292656871|ref|YP_003536768.1|	-	1.9	8.4	12.7	14	5.6	8.8	2.2	1	1	0	1	1	1	0	IBR	domain
DUF1272	PF06906.6	gi|292656871|ref|YP_003536768.1|	-	1.9	8.3	10.8	8.3	6.3	7.5	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-UBR	PF02207.15	gi|292656871|ref|YP_003536768.1|	-	2.3	8.0	12.2	8.9	6.1	2.3	2.7	1	1	1	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
HypA	PF01155.14	gi|292656871|ref|YP_003536768.1|	-	2.9	7.6	11.5	57	3.4	8.0	2.1	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
NOB1_Zn_bind	PF08772.6	gi|292656871|ref|YP_003536768.1|	-	3.5	7.5	10.7	0.68	9.7	0.8	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Nudix_N_2	PF14803.1	gi|292656871|ref|YP_003536768.1|	-	3.8	7.2	10.5	10	5.8	0.0	3.7	3	1	1	4	4	4	0	Nudix	N-terminal
zinc_ribbon_5	PF13719.1	gi|292656871|ref|YP_003536768.1|	-	3.8	7.1	14.5	6.5	6.4	0.1	3.8	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-dskA_traR	PF01258.12	gi|292656871|ref|YP_003536768.1|	-	4	7.2	13.3	5.3	6.8	2.1	3.6	3	1	1	4	4	4	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DNA_ligase_ZBD	PF03119.11	gi|292656871|ref|YP_003536768.1|	-	5.6	6.7	9.4	2.3	8.0	0.8	2.6	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-MYND	PF01753.13	gi|292656871|ref|YP_003536768.1|	-	5.7	6.9	11.3	11	6.0	1.8	2.5	1	1	1	2	2	2	0	MYND	finger
UPF0547	PF10571.4	gi|292656871|ref|YP_003536768.1|	-	6.3	6.5	18.0	0.73	9.5	7.0	3.3	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|292656871|ref|YP_003536768.1|	-	6.7	6.4	14.7	5.6	6.7	0.1	3.8	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|292656871|ref|YP_003536768.1|	-	6.9	6.7	15.4	3	7.8	0.1	3.8	3	1	1	4	4	4	0	C2H2-type	zinc	finger
CpXC	PF14353.1	gi|292656871|ref|YP_003536768.1|	-	6.9	6.6	12.9	4.3	7.3	1.3	3.3	1	1	3	4	4	4	0	CpXC	protein
zf-4CXXC_R1	PF10497.4	gi|292656871|ref|YP_003536768.1|	-	7.6	6.7	10.6	14	5.8	7.4	1.7	1	1	0	1	1	1	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
Ribosomal_L32p	PF01783.18	gi|292656871|ref|YP_003536768.1|	-	7.7	6.7	7.3	6.5e+02	0.6	5.0	2.9	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-C2H2_4	PF13894.1	gi|292656871|ref|YP_003536768.1|	-	8.6	6.9	13.8	20	5.7	0.2	3.9	3	1	0	3	3	3	0	C2H2-type	zinc	finger
TFIIS_C	PF01096.13	gi|292656871|ref|YP_003536768.1|	-	8.7	6.0	16.5	11	5.7	0.5	4.0	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
Desulfoferrod_N	PF06397.7	gi|292656871|ref|YP_003536768.1|	-	9.1	5.7	10.4	4.2	6.8	0.0	3.3	2	1	1	3	3	3	0	Desulfoferrodoxin,	N-terminal	domain
DUF2387	PF09526.5	gi|292656871|ref|YP_003536768.1|	-	9.4	6.2	13.1	6.9	6.6	0.3	2.4	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
TctA	PF01970.11	gi|292656872|ref|YP_003536769.1|	-	1.7e-53	181.5	38.2	2.2e-53	181.1	26.5	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Ribosomal_60s	PF00428.14	gi|292656873|ref|YP_003536770.1|	-	3.2e-14	53.1	25.3	4.8e-14	52.5	17.5	1.3	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
PepSY_2	PF13670.1	gi|292656873|ref|YP_003536770.1|	-	0.046	13.6	4.2	3	7.8	0.0	2.2	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
CENP-T	PF15511.1	gi|292656873|ref|YP_003536770.1|	-	0.55	9.4	9.3	0.64	9.2	6.5	1.0	1	0	0	1	1	1	0	Centromere	kinetochore	component	CENP-T
NOA36	PF06524.7	gi|292656873|ref|YP_003536770.1|	-	0.62	9.2	8.2	0.73	9.0	5.7	1.1	1	0	0	1	1	1	0	NOA36	protein
Cwf_Cwc_15	PF04889.7	gi|292656873|ref|YP_003536770.1|	-	1.7	8.3	7.0	2	8.0	4.9	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
CDC45	PF02724.9	gi|292656873|ref|YP_003536770.1|	-	2.2	6.2	5.6	2.3	6.1	3.9	1.1	1	0	0	1	1	1	0	CDC45-like	protein
DUF2457	PF10446.4	gi|292656873|ref|YP_003536770.1|	-	6.9	5.2	14.5	6.6	5.3	10.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Sigma70_ner	PF04546.8	gi|292656873|ref|YP_003536770.1|	-	8.9	5.8	15.0	14	5.2	10.4	1.4	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
Ribosomal_L10	PF00466.15	gi|292656874|ref|YP_003536771.1|	-	9.8e-22	76.7	0.0	2e-21	75.7	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L10
BUD22	PF09073.5	gi|292656874|ref|YP_003536771.1|	-	0.051	12.6	1.8	0.073	12.1	1.2	1.1	1	0	0	1	1	1	0	BUD22
Ribosomal_60s	PF00428.14	gi|292656874|ref|YP_003536771.1|	-	0.063	13.6	16.5	0.057	13.8	9.5	2.4	2	1	0	2	2	2	0	60s	Acidic	ribosomal	protein
CobT	PF06213.7	gi|292656874|ref|YP_003536771.1|	-	0.58	9.2	15.1	1	8.4	10.4	1.3	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
RNA_pol_3_Rpc31	PF11705.3	gi|292656874|ref|YP_003536771.1|	-	6.7	6.5	11.9	11	5.8	8.2	1.3	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
Ribosomal_L1	PF00687.16	gi|292656875|ref|YP_003536772.1|	-	1.2e-43	148.9	0.0	1.5e-43	148.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L11_N	PF03946.9	gi|292656876|ref|YP_003536773.1|	-	5.1e-21	73.8	0.1	8e-21	73.2	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.14	gi|292656876|ref|YP_003536773.1|	-	3.9e-19	68.5	0.0	5.2e-19	68.1	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
F420_ligase	PF01996.11	gi|292656876|ref|YP_003536773.1|	-	0.076	12.0	0.1	0.11	11.6	0.0	1.1	1	0	0	1	1	1	0	F420-0:Gamma-glutamyl	ligase
Peptidase_M42	PF05343.9	gi|292656877|ref|YP_003536774.1|	-	4.8e-76	255.3	5.1	5.5e-76	255.1	3.5	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|292656877|ref|YP_003536774.1|	-	1.1e-09	38.0	0.1	1.9e-09	37.3	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.10	gi|292656877|ref|YP_003536774.1|	-	3.9e-07	28.9	0.3	0.00039	19.0	0.0	2.2	2	0	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
GHMP_kinases_N	PF00288.21	gi|292656879|ref|YP_003536776.1|	-	1.2e-17	63.7	0.3	2.9e-17	62.4	0.1	1.8	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|292656879|ref|YP_003536776.1|	-	6.9e-13	48.6	0.4	6.1e-12	45.5	0.0	2.3	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|292656879|ref|YP_003536776.1|	-	0.00036	19.7	0.1	0.00084	18.5	0.0	1.7	2	0	0	2	2	2	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.23	gi|292656880|ref|YP_003536777.1|	-	2.2e-37	128.8	4.3	2.5e-37	128.7	3.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Lactamase_B_2	PF12706.2	gi|292656881|ref|YP_003536778.1|	-	2.1e-18	66.6	0.3	1e-17	64.3	0.1	1.8	1	1	1	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|292656881|ref|YP_003536778.1|	-	1.2e-14	54.4	3.8	2.7e-14	53.2	1.0	2.0	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|292656881|ref|YP_003536778.1|	-	0.0074	16.0	0.1	0.044	13.4	0.0	2.0	1	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
BPD_transp_1	PF00528.17	gi|292656882|ref|YP_003536779.1|	-	1.2e-19	70.5	9.3	1.2e-19	70.5	6.4	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Colicin_V	PF02674.11	gi|292656882|ref|YP_003536779.1|	-	4.9	6.9	12.2	1.2	8.9	0.0	3.2	4	0	0	4	4	4	0	Colicin	V	production	protein
BPD_transp_1	PF00528.17	gi|292656883|ref|YP_003536780.1|	-	3.1e-23	82.2	6.1	3.1e-23	82.2	4.2	2.1	4	0	0	4	4	4	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|292656883|ref|YP_003536780.1|	-	0.049	13.0	0.1	0.049	13.0	0.1	2.4	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DEAD_assoc	PF08494.6	gi|292656884|ref|YP_003536781.1|	-	7.8e-52	175.7	0.7	2.7e-51	173.9	0.4	2.0	3	0	0	3	3	3	1	DEAD/H	associated
DEAD	PF00270.24	gi|292656884|ref|YP_003536781.1|	-	1.3e-31	109.3	0.0	3e-30	104.9	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|292656884|ref|YP_003536781.1|	-	4.2e-16	58.5	0.1	6.1e-15	54.8	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|292656884|ref|YP_003536781.1|	-	1.1e-08	35.0	0.0	2.4e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.1	gi|292656884|ref|YP_003536781.1|	-	0.00061	19.9	0.1	0.0037	17.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
SNF2_N	PF00176.18	gi|292656884|ref|YP_003536781.1|	-	0.098	11.4	0.0	0.4	9.4	0.0	2.0	2	1	0	2	2	2	0	SNF2	family	N-terminal	domain
AAA_11	PF13086.1	gi|292656885|ref|YP_003536782.1|	-	3.9e-40	137.9	0.0	1.1e-20	74.2	0.0	2.6	1	1	1	2	2	2	2	AAA	domain
AAA_12	PF13087.1	gi|292656885|ref|YP_003536782.1|	-	1.3e-38	132.3	0.0	2.1e-38	131.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Dna2	PF08696.6	gi|292656885|ref|YP_003536782.1|	-	1.5e-36	125.6	0.0	6.7e-36	123.5	0.0	1.9	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_30	PF13604.1	gi|292656885|ref|YP_003536782.1|	-	4e-18	65.6	1.9	5.7e-17	61.9	0.2	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|292656885|ref|YP_003536782.1|	-	2.3e-17	62.4	2.1	1.9e-14	53.1	0.1	2.8	2	0	0	2	2	2	2	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|292656885|ref|YP_003536782.1|	-	2.1e-11	43.7	0.0	6.6e-11	42.0	0.0	1.8	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.13	gi|292656885|ref|YP_003536782.1|	-	9.8e-08	31.7	0.0	0.37	10.2	0.0	3.3	3	0	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
UvrD-helicase	PF00580.16	gi|292656885|ref|YP_003536782.1|	-	4.2e-06	26.2	0.0	8.9e-06	25.2	0.0	1.5	2	0	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C_2	PF13538.1	gi|292656885|ref|YP_003536782.1|	-	0.00014	21.9	0.0	0.00044	20.3	0.0	1.9	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
AAA_16	PF13191.1	gi|292656885|ref|YP_003536782.1|	-	0.00058	19.9	1.5	0.0013	18.7	0.3	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
Cas_Cas4	PF01930.12	gi|292656885|ref|YP_003536782.1|	-	0.0017	18.3	0.0	0.0073	16.2	0.0	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF83
Helicase_RecD	PF05127.9	gi|292656885|ref|YP_003536782.1|	-	0.0028	17.3	0.5	0.0078	15.8	0.1	1.9	2	1	0	2	2	2	1	Helicase
AAA_22	PF13401.1	gi|292656885|ref|YP_003536782.1|	-	0.0058	16.7	0.0	0.025	14.7	0.0	2.2	2	1	0	2	2	1	1	AAA	domain
ResIII	PF04851.10	gi|292656885|ref|YP_003536782.1|	-	0.0073	16.1	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.4	gi|292656885|ref|YP_003536782.1|	-	0.011	14.6	0.0	0.086	11.8	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.1	gi|292656885|ref|YP_003536782.1|	-	0.017	14.5	0.2	0.09	12.1	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|292656885|ref|YP_003536782.1|	-	0.024	14.0	0.0	0.059	12.7	0.0	1.6	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|292656885|ref|YP_003536782.1|	-	0.046	13.4	0.0	0.13	12.0	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
T2SE	PF00437.15	gi|292656885|ref|YP_003536782.1|	-	0.049	12.5	0.0	0.094	11.5	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|292656885|ref|YP_003536782.1|	-	0.058	12.8	0.0	7.5	5.8	0.0	2.5	1	1	1	2	2	2	0	AAA-like	domain
AAA_33	PF13671.1	gi|292656885|ref|YP_003536782.1|	-	0.059	13.2	0.0	0.21	11.4	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|292656885|ref|YP_003536782.1|	-	0.061	13.5	0.4	0.18	11.9	0.3	1.8	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.11	gi|292656885|ref|YP_003536782.1|	-	0.19	10.9	0.0	0.64	9.2	0.0	1.9	2	0	0	2	2	2	0	PhoH-like	protein
FtsX	PF02687.16	gi|292656887|ref|YP_003536784.1|	-	0.0025	17.5	1.4	0.0029	17.3	1.0	1.1	1	0	0	1	1	1	1	FtsX-like	permease	family
DUF1212	PF06738.7	gi|292656887|ref|YP_003536784.1|	-	0.0069	15.8	0.8	0.0077	15.7	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1212)
Ammonium_transp	PF00909.16	gi|292656887|ref|YP_003536784.1|	-	0.01	14.3	0.9	0.011	14.2	0.6	1.0	1	0	0	1	1	1	0	Ammonium	Transporter	Family
Polysacc_synt	PF01943.12	gi|292656887|ref|YP_003536784.1|	-	0.033	13.4	1.0	0.036	13.3	0.7	1.0	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
DUF3754	PF12576.3	gi|292656887|ref|YP_003536784.1|	-	0.06	12.9	0.4	0.068	12.8	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3754)
DUF485	PF04341.7	gi|292656887|ref|YP_003536784.1|	-	0.15	11.7	1.0	0.19	11.4	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF485
DUF4229	PF14012.1	gi|292656887|ref|YP_003536784.1|	-	0.39	10.6	5.2	0.51	10.2	3.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4229)
PepSY_TM_2	PF13703.1	gi|292656887|ref|YP_003536784.1|	-	0.6	10.3	4.1	1.1	9.4	2.9	1.6	1	1	0	1	1	1	0	PepSY-associated	TM	helix
DUF1049	PF06305.6	gi|292656887|ref|YP_003536784.1|	-	1.1	8.7	7.3	2.1	7.8	4.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1049)
DUF2342	PF10103.4	gi|292656888|ref|YP_003536785.1|	-	1.2e-83	280.9	2.4	6.2e-44	150.3	0.0	2.0	1	1	1	2	2	2	2	Uncharacterised	conserved	protein	(DUF2342)
Peptidase_MA_2	PF13485.1	gi|292656888|ref|YP_003536785.1|	-	0.011	15.7	0.8	0.033	14.2	0.6	1.8	1	1	0	1	1	1	0	Peptidase	MA	superfamily
Glyoxalase_3	PF13468.1	gi|292656889|ref|YP_003536786.1|	-	6.6e-26	91.2	0.7	2.1e-25	89.6	0.3	1.8	2	0	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|292656889|ref|YP_003536786.1|	-	0.0074	16.2	0.0	0.048	13.6	0.0	2.2	2	1	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Lactamase_B	PF00753.22	gi|292656890|ref|YP_003536787.1|	-	4.7e-18	65.5	8.3	4.7e-18	65.5	5.7	1.7	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|292656890|ref|YP_003536787.1|	-	1.3e-14	54.4	0.0	2.4e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|292656890|ref|YP_003536787.1|	-	0.0028	17.2	0.2	0.005	16.4	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Ribosomal_S2	PF00318.15	gi|292656891|ref|YP_003536788.1|	-	1.1e-37	129.3	0.0	8.1e-19	67.6	0.2	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
TRAP_alpha	PF03896.11	gi|292656891|ref|YP_003536788.1|	-	4.9	6.0	7.2	6.4	5.6	5.0	1.3	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Enolase_C	PF00113.17	gi|292656892|ref|YP_003536789.1|	-	3.9e-74	249.2	0.3	5.4e-74	248.8	0.2	1.2	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|292656892|ref|YP_003536789.1|	-	2e-38	131.3	0.4	9.2e-38	129.1	0.2	2.1	2	0	0	2	2	2	1	Enolase,	N-terminal	domain
MR_MLE	PF01188.16	gi|292656892|ref|YP_003536789.1|	-	2e-05	25.0	0.0	4.8e-05	23.7	0.0	1.7	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MAAL_C	PF07476.6	gi|292656892|ref|YP_003536789.1|	-	3e-05	23.1	1.0	6.6e-05	21.9	0.1	1.8	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
MR_MLE_C	PF13378.1	gi|292656892|ref|YP_003536789.1|	-	0.00045	20.1	0.2	0.0015	18.4	0.0	1.9	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
RNA_pol_Rpb6	PF01192.17	gi|292656893|ref|YP_003536790.1|	-	2.7e-18	65.4	0.0	3.1e-18	65.2	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.12	gi|292656894|ref|YP_003536791.1|	-	2e-28	98.1	0.3	2.2e-28	98.0	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Ribosomal_S9	PF00380.14	gi|292656895|ref|YP_003536792.1|	-	8.5e-37	126.0	0.2	9.6e-37	125.9	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.13	gi|292656896|ref|YP_003536793.1|	-	7.6e-23	80.9	0.0	1e-22	80.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18e	PF00828.14	gi|292656897|ref|YP_003536794.1|	-	1.5e-14	54.4	0.2	1.8e-14	54.2	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
RNA_pol_A_bac	PF01000.21	gi|292656898|ref|YP_003536795.1|	-	3.3e-20	72.3	0.0	1.8e-19	69.9	0.0	2.0	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|292656898|ref|YP_003536795.1|	-	2.6e-10	39.2	0.0	3.3e-10	38.9	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF4198	PF10670.4	gi|292656898|ref|YP_003536795.1|	-	0.024	14.6	0.1	0.064	13.2	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4198)
CusF_Ec	PF11604.3	gi|292656898|ref|YP_003536795.1|	-	0.083	12.7	0.0	11	5.9	0.0	2.7	1	1	1	2	2	2	0	Copper	binding	periplasmic	protein	CusF
Ribosomal_S11	PF00411.14	gi|292656899|ref|YP_003536796.1|	-	6.4e-44	148.6	0.6	7.4e-44	148.4	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.20	gi|292656900|ref|YP_003536797.1|	-	1.5e-12	46.7	0.4	8.1e-12	44.3	0.0	2.1	2	0	0	2	2	2	1	S4	domain
S4_2	PF13275.1	gi|292656900|ref|YP_003536797.1|	-	0.0021	17.6	0.0	0.0034	16.9	0.0	1.3	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.14	gi|292656900|ref|YP_003536797.1|	-	0.023	15.0	1.2	0.08	13.3	0.2	2.0	2	0	0	2	2	2	0	Ribosomal	protein	S4/S9	N-terminal	domain
DUF4185	PF13810.1	gi|292656900|ref|YP_003536797.1|	-	0.13	11.1	0.0	0.17	10.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4185)
Ribosomal_S13	PF00416.17	gi|292656901|ref|YP_003536798.1|	-	4.3e-35	120.3	1.0	5.3e-35	120.0	0.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HHH_5	PF14520.1	gi|292656901|ref|YP_003536798.1|	-	0.034	14.3	0.4	0.046	13.9	0.3	1.6	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Thioredoxin	PF00085.15	gi|292656902|ref|YP_003536799.1|	-	2.5e-14	52.8	0.0	2.8e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|292656902|ref|YP_003536799.1|	-	3.2e-05	24.0	0.0	0.00042	20.5	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|292656902|ref|YP_003536799.1|	-	0.001	18.8	0.0	0.0017	18.0	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
HyaE	PF07449.6	gi|292656902|ref|YP_003536799.1|	-	0.0091	15.8	0.1	0.017	15.0	0.0	1.4	2	0	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.9	gi|292656902|ref|YP_003536799.1|	-	0.041	14.1	0.0	0.051	13.8	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.1	gi|292656902|ref|YP_003536799.1|	-	0.061	12.7	0.0	0.23	10.9	0.0	1.8	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
Phosducin	PF02114.11	gi|292656902|ref|YP_003536799.1|	-	0.1	11.3	0.0	0.11	11.2	0.0	1.1	1	0	0	1	1	1	0	Phosducin
zf-ribbon_3	PF13248.1	gi|292656903|ref|YP_003536800.1|	-	2.7e-07	29.5	0.4	4.3e-07	28.9	0.3	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|292656903|ref|YP_003536800.1|	-	2.3e-05	24.1	0.3	3e-05	23.7	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|292656903|ref|YP_003536800.1|	-	0.0013	18.1	0.2	0.0018	17.6	0.2	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.4	gi|292656903|ref|YP_003536800.1|	-	0.0015	18.1	1.3	0.0026	17.4	0.9	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
TM2	PF05154.11	gi|292656903|ref|YP_003536800.1|	-	0.013	15.7	2.0	0.013	15.7	1.4	1.7	2	0	0	2	2	2	0	TM2	domain
Sgf11	PF08209.6	gi|292656903|ref|YP_003536800.1|	-	0.016	14.4	0.1	0.026	13.8	0.0	1.3	1	0	0	1	1	1	0	Sgf11	(transcriptional	regulation	protein)
Prok-RING_1	PF14446.1	gi|292656903|ref|YP_003536800.1|	-	0.019	14.7	1.5	0.026	14.2	1.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
TF_Zn_Ribbon	PF08271.7	gi|292656903|ref|YP_003536800.1|	-	0.028	13.7	0.2	0.053	12.8	0.1	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|292656903|ref|YP_003536800.1|	-	0.11	12.1	0.4	7.8	6.2	0.0	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
DUF2614	PF11023.3	gi|292656903|ref|YP_003536800.1|	-	0.12	12.1	0.3	0.12	12.1	0.2	1.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2614)
OrfB_Zn_ribbon	PF07282.6	gi|292656903|ref|YP_003536800.1|	-	0.17	11.5	0.3	0.26	10.9	0.2	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF2628	PF10947.3	gi|292656903|ref|YP_003536800.1|	-	0.38	10.5	4.8	0.61	9.9	3.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
zf-RING_3	PF14369.1	gi|292656903|ref|YP_003536800.1|	-	0.61	10.1	3.6	1.1	9.3	0.2	2.2	2	0	0	2	2	2	0	zinc-finger
DUF4131	PF13567.1	gi|292656903|ref|YP_003536800.1|	-	3.5	6.9	6.6	2.2	7.6	3.5	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Usp	PF00582.21	gi|292656904|ref|YP_003536801.1|	-	3.9e-09	36.8	9.2	6.5e-08	32.8	6.4	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
Mob_synth_C	PF06463.8	gi|292656905|ref|YP_003536802.1|	-	2.7e-29	101.4	0.0	5.3e-29	100.4	0.0	1.5	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Radical_SAM	PF04055.16	gi|292656905|ref|YP_003536802.1|	-	1.9e-25	89.9	0.1	4.7e-24	85.4	0.0	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|292656905|ref|YP_003536802.1|	-	1.5e-08	34.8	0.0	3.1e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|292656905|ref|YP_003536802.1|	-	2.3e-08	34.0	0.0	4.8e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Cytochrome_C7	PF14522.1	gi|292656905|ref|YP_003536802.1|	-	0.071	12.7	1.0	8.9	6.0	0.0	2.3	2	0	0	2	2	2	0	Cytochrome	c7
ParA	PF10609.4	gi|292656906|ref|YP_003536803.1|	-	5.3e-35	119.1	0.0	9.1e-35	118.3	0.0	1.4	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|292656906|ref|YP_003536803.1|	-	2.2e-19	69.6	0.0	3.1e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF59	PF01883.14	gi|292656906|ref|YP_003536803.1|	-	4.4e-12	45.8	0.6	8.5e-12	44.8	0.4	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
MipZ	PF09140.6	gi|292656906|ref|YP_003536803.1|	-	6.4e-09	35.2	0.0	8.7e-09	34.8	0.0	1.2	1	0	0	1	1	1	1	ATPase	MipZ
AAA_31	PF13614.1	gi|292656906|ref|YP_003536803.1|	-	6.8e-09	35.8	0.0	1.7e-07	31.2	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
VirC1	PF07015.6	gi|292656906|ref|YP_003536803.1|	-	8.8e-05	21.6	0.0	0.00015	20.9	0.0	1.4	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.10	gi|292656906|ref|YP_003536803.1|	-	0.00012	21.2	2.9	0.00057	19.0	0.7	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|292656906|ref|YP_003536803.1|	-	0.00031	20.0	0.0	0.013	14.6	0.1	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_26	PF13500.1	gi|292656906|ref|YP_003536803.1|	-	0.0033	17.0	0.0	1.6	8.2	0.0	2.7	3	0	0	3	3	3	2	AAA	domain
AAA_25	PF13481.1	gi|292656906|ref|YP_003536803.1|	-	0.0043	16.4	0.0	0.0077	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.15	gi|292656906|ref|YP_003536803.1|	-	0.0051	16.4	0.1	0.41	10.2	0.0	2.2	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_19	PF13245.1	gi|292656906|ref|YP_003536803.1|	-	0.27	11.0	3.8	11	5.8	0.1	2.7	2	1	0	2	2	2	0	Part	of	AAA	domain
UDG	PF03167.14	gi|292656908|ref|YP_003536805.1|	-	1.2e-24	86.4	0.0	1.5e-24	86.2	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF2064	PF09837.4	gi|292656909|ref|YP_003536806.1|	-	0.00011	21.7	0.0	0.00018	21.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
CofC	PF01983.11	gi|292656909|ref|YP_003536806.1|	-	0.064	12.2	0.0	0.62	8.9	0.0	2.0	2	0	0	2	2	2	0	Guanylyl	transferase	CofC	like
Acetyltransf_4	PF13420.1	gi|292656910|ref|YP_003536807.1|	-	1e-10	41.7	0.0	1.4e-10	41.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292656910|ref|YP_003536807.1|	-	1.5e-10	40.9	0.0	2.7e-10	40.1	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656910|ref|YP_003536807.1|	-	1.8e-06	28.0	0.0	2.6e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656910|ref|YP_003536807.1|	-	0.00059	19.9	0.0	0.00099	19.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|292656910|ref|YP_003536807.1|	-	0.00087	19.2	0.4	0.0041	17.0	0.3	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656910|ref|YP_003536807.1|	-	0.0018	18.1	0.0	0.0042	16.9	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.1	gi|292656910|ref|YP_003536807.1|	-	0.0049	17.0	0.0	0.0082	16.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656910|ref|YP_003536807.1|	-	0.026	14.4	0.1	0.056	13.2	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
HemN_C	PF06969.11	gi|292656910|ref|YP_003536807.1|	-	0.11	12.5	0.0	1.8	8.6	0.0	2.4	2	0	0	2	2	2	0	HemN	C-terminal	domain
CMAS	PF02353.15	gi|292656911|ref|YP_003536808.1|	-	0.082	11.9	0.3	0.094	11.7	0.2	1.0	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PRK	PF00485.13	gi|292656912|ref|YP_003536809.1|	-	5.8e-53	179.3	0.1	7.8e-53	178.9	0.1	1.1	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_17	PF13207.1	gi|292656912|ref|YP_003536809.1|	-	2e-07	31.8	1.1	4.4e-07	30.7	0.8	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292656912|ref|YP_003536809.1|	-	2.8e-07	30.8	1.1	7e-07	29.6	0.8	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_26	PF13500.1	gi|292656912|ref|YP_003536809.1|	-	5.9e-05	22.7	0.1	0.0083	15.7	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292656912|ref|YP_003536809.1|	-	0.00011	21.3	0.0	0.00024	20.2	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
CoaE	PF01121.15	gi|292656912|ref|YP_003536809.1|	-	0.00014	21.2	1.9	0.03	13.7	0.0	2.6	3	0	0	3	3	3	2	Dephospho-CoA	kinase
AAA_28	PF13521.1	gi|292656912|ref|YP_003536809.1|	-	0.00028	20.8	0.1	0.00059	19.8	0.0	1.5	2	0	0	2	2	1	1	AAA	domain
ABC_tran	PF00005.22	gi|292656912|ref|YP_003536809.1|	-	0.00047	20.4	0.1	0.00085	19.6	0.1	1.5	1	1	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.1	gi|292656912|ref|YP_003536809.1|	-	0.001	19.2	0.0	0.0018	18.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
CPT	PF07931.7	gi|292656912|ref|YP_003536809.1|	-	0.0063	16.1	0.0	0.01	15.4	0.0	1.6	1	1	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
Cytidylate_kin2	PF13189.1	gi|292656912|ref|YP_003536809.1|	-	0.0076	16.1	0.1	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
dNK	PF01712.14	gi|292656912|ref|YP_003536809.1|	-	0.039	13.8	0.1	0.068	13.0	0.1	1.4	1	0	0	1	1	1	0	Deoxynucleoside	kinase
AAA_33	PF13671.1	gi|292656912|ref|YP_003536809.1|	-	0.05	13.4	0.1	0.14	12.0	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
CbiA	PF01656.18	gi|292656912|ref|YP_003536809.1|	-	0.064	12.6	0.2	0.34	10.2	0.2	2.0	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
UPF0079	PF02367.12	gi|292656912|ref|YP_003536809.1|	-	0.068	12.8	0.0	0.41	10.2	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_23	PF13476.1	gi|292656912|ref|YP_003536809.1|	-	0.069	13.4	0.4	0.39	10.9	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|292656912|ref|YP_003536809.1|	-	0.069	13.1	0.0	0.094	12.6	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
MobB	PF03205.9	gi|292656912|ref|YP_003536809.1|	-	0.088	12.5	0.3	2.3	7.9	0.0	2.7	2	1	1	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|292656912|ref|YP_003536809.1|	-	0.091	12.5	0.3	0.26	11.0	0.2	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
RNA_helicase	PF00910.17	gi|292656912|ref|YP_003536809.1|	-	0.13	12.4	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
Torsin	PF06309.6	gi|292656912|ref|YP_003536809.1|	-	0.15	11.9	0.0	0.35	10.7	0.0	1.6	1	1	0	1	1	1	0	Torsin
Peripla_BP_6	PF13458.1	gi|292656913|ref|YP_003536810.1|	-	1.3e-24	87.1	4.9	3.3e-20	72.7	0.4	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|292656913|ref|YP_003536810.1|	-	9.1e-17	60.8	2.7	1.3e-14	53.8	0.6	2.1	2	0	0	2	2	2	2	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|292656913|ref|YP_003536810.1|	-	0.00048	18.9	0.1	0.00097	17.9	0.1	1.5	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|292656913|ref|YP_003536810.1|	-	0.011	15.6	2.4	0.011	15.6	1.7	3.0	2	1	1	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|292656915|ref|YP_003536812.1|	-	3.9e-30	104.9	0.0	6.4e-30	104.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656915|ref|YP_003536812.1|	-	2.5e-11	44.1	0.0	6.3e-09	36.1	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292656915|ref|YP_003536812.1|	-	0.00012	21.4	0.0	0.0039	16.4	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|292656915|ref|YP_003536812.1|	-	0.0007	19.1	0.3	0.0069	15.8	0.1	2.1	2	0	0	2	2	2	1	AAA-like	domain
AAA_29	PF13555.1	gi|292656915|ref|YP_003536812.1|	-	0.0013	18.1	0.1	0.0026	17.2	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|292656915|ref|YP_003536812.1|	-	0.0017	18.7	0.0	0.0022	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|292656915|ref|YP_003536812.1|	-	0.009	16.1	0.1	0.24	11.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MutS_V	PF00488.16	gi|292656915|ref|YP_003536812.1|	-	0.012	15.0	0.0	0.016	14.5	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
AAA_30	PF13604.1	gi|292656915|ref|YP_003536812.1|	-	0.043	13.3	0.6	0.085	12.4	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|292656915|ref|YP_003536812.1|	-	0.053	13.2	0.1	0.089	12.4	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|292656915|ref|YP_003536812.1|	-	0.063	12.6	0.0	0.37	10.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|292656915|ref|YP_003536812.1|	-	0.073	12.9	0.0	0.3	10.9	0.0	2.0	1	1	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|292656915|ref|YP_003536812.1|	-	0.099	12.5	2.0	2.5	8.0	1.4	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|292656915|ref|YP_003536812.1|	-	0.11	12.5	0.2	0.58	10.1	0.1	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|292656915|ref|YP_003536812.1|	-	0.13	11.1	0.2	0.19	10.5	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
ABC_tran	PF00005.22	gi|292656916|ref|YP_003536813.1|	-	4.4e-31	108.0	0.0	5.9e-31	107.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292656916|ref|YP_003536813.1|	-	1.6e-12	47.9	0.2	2.5e-06	27.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|292656916|ref|YP_003536813.1|	-	2.7e-11	42.8	0.0	5.5e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_29	PF13555.1	gi|292656916|ref|YP_003536813.1|	-	9.5e-06	25.0	0.5	1.9e-05	24.1	0.4	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|292656916|ref|YP_003536813.1|	-	2.5e-05	24.6	0.1	3.6e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|292656916|ref|YP_003536813.1|	-	0.0011	18.3	0.2	0.53	9.4	0.2	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.24	gi|292656916|ref|YP_003536813.1|	-	0.0018	18.4	0.1	0.16	12.1	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|292656916|ref|YP_003536813.1|	-	0.0091	15.4	0.2	1	8.7	0.2	2.3	1	1	0	2	2	2	1	AAA-like	domain
MukB	PF04310.7	gi|292656916|ref|YP_003536813.1|	-	0.027	13.8	0.1	0.043	13.1	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
MMR_HSR1	PF01926.18	gi|292656916|ref|YP_003536813.1|	-	0.038	13.9	0.0	0.062	13.2	0.0	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|292656916|ref|YP_003536813.1|	-	0.095	11.7	0.0	0.18	10.8	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_22	PF13401.1	gi|292656916|ref|YP_003536813.1|	-	0.11	12.5	0.5	0.56	10.3	0.4	2.2	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|292656916|ref|YP_003536813.1|	-	0.12	11.5	0.1	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
BPD_transp_2	PF02653.11	gi|292656917|ref|YP_003536814.1|	-	3.7e-43	147.4	28.7	3.7e-43	147.4	19.9	1.6	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
MerE	PF05052.7	gi|292656917|ref|YP_003536814.1|	-	6.9	6.7	9.5	7.4	6.6	1.7	2.5	2	0	0	2	2	2	0	MerE	protein
BPD_transp_2	PF02653.11	gi|292656918|ref|YP_003536815.1|	-	1.4e-31	109.4	44.5	1.4e-31	109.4	30.8	2.1	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Acetyltransf_1	PF00583.19	gi|292656919|ref|YP_003536816.1|	-	1.1e-16	60.5	0.3	1.9e-16	59.8	0.2	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292656919|ref|YP_003536816.1|	-	4.8e-11	42.8	0.7	8.7e-11	41.9	0.5	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292656919|ref|YP_003536816.1|	-	2.4e-10	40.4	0.0	3.2e-10	40.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656919|ref|YP_003536816.1|	-	4.3e-06	26.3	0.0	8.3e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|292656919|ref|YP_003536816.1|	-	3.7e-05	23.7	0.0	4.8e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292656919|ref|YP_003536816.1|	-	3.7e-05	23.6	0.1	4.4e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292656919|ref|YP_003536816.1|	-	6.3e-05	23.1	0.0	7e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656919|ref|YP_003536816.1|	-	6.5e-05	22.7	0.1	0.00024	20.9	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|292656919|ref|YP_003536816.1|	-	0.002	17.7	0.1	0.0041	16.7	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292656919|ref|YP_003536816.1|	-	0.034	14.0	0.1	0.064	13.1	0.1	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
zf-ribbon_3	PF13248.1	gi|292656921|ref|YP_003536818.1|	-	0.001	18.1	2.0	0.62	9.3	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|292656921|ref|YP_003536818.1|	-	0.0029	17.3	0.6	0.0046	16.7	0.4	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
UPF0547	PF10571.4	gi|292656921|ref|YP_003536818.1|	-	0.0038	16.8	1.4	0.11	12.2	0.1	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|292656921|ref|YP_003536818.1|	-	0.054	12.9	1.4	6.9	6.3	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|292656921|ref|YP_003536818.1|	-	0.14	11.8	2.7	0.87	9.3	1.9	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
zf-ISL3	PF14690.1	gi|292656921|ref|YP_003536818.1|	-	0.21	11.6	1.2	3.4	7.7	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PhnA_Zn_Ribbon	PF08274.7	gi|292656921|ref|YP_003536818.1|	-	0.73	9.6	3.3	10	6.0	0.1	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.7	gi|292656921|ref|YP_003536818.1|	-	0.78	9.1	4.5	3.9	6.8	3.1	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|292656921|ref|YP_003536818.1|	-	1.2	8.6	3.8	12	5.4	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|292656921|ref|YP_003536818.1|	-	1.2	8.7	4.5	3.6	7.1	0.3	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656921|ref|YP_003536818.1|	-	1.2	8.9	5.3	1.5	8.6	0.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292656921|ref|YP_003536818.1|	-	2.3	8.2	5.5	37	4.3	3.6	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
TrmB	PF01978.14	gi|292656922|ref|YP_003536819.1|	-	1.1e-05	25.0	0.0	1.4e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.1	gi|292656922|ref|YP_003536819.1|	-	0.00018	21.5	0.2	0.00024	21.1	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|292656922|ref|YP_003536819.1|	-	0.00023	20.6	0.0	0.00032	20.2	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FeoC	PF09012.5	gi|292656922|ref|YP_003536819.1|	-	0.022	14.4	0.0	0.028	14.1	0.0	1.1	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
MarR	PF01047.17	gi|292656922|ref|YP_003536819.1|	-	0.024	14.3	0.0	0.033	13.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.9	gi|292656922|ref|YP_003536819.1|	-	0.024	14.4	0.0	0.04	13.6	0.0	1.3	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|292656922|ref|YP_003536819.1|	-	0.055	13.5	0.1	0.075	13.0	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|292656922|ref|YP_003536819.1|	-	0.072	12.8	0.0	0.09	12.5	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
FAD_binding_2	PF00890.19	gi|292656923|ref|YP_003536820.1|	-	4.1e-121	404.7	7.2	5.4e-121	404.3	5.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|292656923|ref|YP_003536820.1|	-	6.1e-39	132.8	1.2	1e-38	132.1	0.8	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|292656923|ref|YP_003536820.1|	-	8.7e-08	32.2	9.8	4e-06	26.8	6.8	3.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292656923|ref|YP_003536820.1|	-	5.2e-07	28.9	6.9	3.3e-05	22.9	4.7	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|292656923|ref|YP_003536820.1|	-	0.00028	19.4	1.5	0.00028	19.4	1.1	2.1	3	0	0	3	3	3	1	HI0933-like	protein
Thi4	PF01946.12	gi|292656923|ref|YP_003536820.1|	-	0.001	18.1	2.7	0.0039	16.3	0.4	2.4	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.17	gi|292656923|ref|YP_003536820.1|	-	0.0012	17.7	5.2	0.002	17.0	2.3	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|292656923|ref|YP_003536820.1|	-	0.0021	17.1	7.8	0.0065	15.5	5.4	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|292656923|ref|YP_003536820.1|	-	0.0024	17.4	0.1	0.0051	16.3	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|292656923|ref|YP_003536820.1|	-	0.0054	15.8	1.1	0.011	14.8	0.7	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|292656923|ref|YP_003536820.1|	-	0.013	15.8	5.8	0.13	12.6	0.8	3.2	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|292656923|ref|YP_003536820.1|	-	0.027	14.7	0.0	0.072	13.3	0.0	1.8	2	0	0	2	2	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|292656923|ref|YP_003536820.1|	-	0.08	12.9	0.3	0.19	11.7	0.2	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|292656923|ref|YP_003536820.1|	-	0.99	9.4	4.6	0.27	11.3	0.2	2.4	2	1	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Fer2_3	PF13085.1	gi|292656924|ref|YP_003536821.1|	-	7.9e-32	109.3	0.0	1.5e-31	108.4	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|292656924|ref|YP_003536821.1|	-	9.6e-11	41.5	4.3	2.6e-10	40.1	3.0	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|292656924|ref|YP_003536821.1|	-	3.8e-06	27.0	1.4	1.4e-05	25.2	0.9	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|292656924|ref|YP_003536821.1|	-	4.2e-06	27.0	0.9	1.6e-05	25.1	0.5	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|292656924|ref|YP_003536821.1|	-	4.5e-05	23.7	4.6	4.5e-05	23.7	3.2	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|292656924|ref|YP_003536821.1|	-	0.00018	21.2	6.6	0.0005	19.8	4.6	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|292656924|ref|YP_003536821.1|	-	0.00057	20.2	13.2	0.0032	17.8	0.1	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|292656924|ref|YP_003536821.1|	-	0.025	14.1	6.8	0.64	9.6	0.3	2.7	1	1	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.1	gi|292656924|ref|YP_003536821.1|	-	0.038	14.7	6.8	0.48	11.2	0.6	2.9	3	0	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
YtkA	PF13115.1	gi|292656924|ref|YP_003536821.1|	-	0.065	13.5	0.1	0.25	11.6	0.0	2.0	2	0	0	2	2	2	0	YtkA-like
Fer4_2	PF12797.2	gi|292656924|ref|YP_003536821.1|	-	0.07	13.0	1.0	0.07	13.0	0.7	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|292656924|ref|YP_003536821.1|	-	2.4	8.1	9.7	2.4	8.1	1.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Sdh_cyt	PF01127.17	gi|292656925|ref|YP_003536822.1|	-	7.6e-11	41.8	4.9	9.5e-11	41.5	3.4	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Colicin_V	PF02674.11	gi|292656925|ref|YP_003536822.1|	-	0.64	9.8	7.2	0.92	9.3	5.0	1.2	1	0	0	1	1	1	0	Colicin	V	production	protein
DUF4282	PF14110.1	gi|292656925|ref|YP_003536822.1|	-	3.2	7.9	6.9	0.33	11.1	0.8	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4282)
Sdh_cyt	PF01127.17	gi|292656926|ref|YP_003536823.1|	-	9.5e-23	80.3	6.6	1.1e-22	80.1	4.6	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Ferric_reduct	PF01794.14	gi|292656926|ref|YP_003536823.1|	-	0.089	12.8	6.7	0.15	12.1	4.7	1.5	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
PgaD	PF13994.1	gi|292656926|ref|YP_003536823.1|	-	0.097	12.1	4.9	0.15	11.5	3.4	1.3	1	0	0	1	1	1	0	PgaD-like	protein
AstE_AspA	PF04952.9	gi|292656927|ref|YP_003536824.1|	-	3.4e-64	216.5	0.0	4e-64	216.3	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
FB_lectin	PF07367.6	gi|292656927|ref|YP_003536824.1|	-	0.17	11.5	0.1	0.38	10.3	0.0	1.5	1	0	0	1	1	1	0	Fungal	fruit	body	lectin
RimK	PF08443.6	gi|292656928|ref|YP_003536825.1|	-	2.3e-25	89.1	0.0	3.8e-25	88.4	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Zn_protease	PF05618.6	gi|292656928|ref|YP_003536825.1|	-	3.1e-09	36.6	0.3	1.8e-07	30.9	0.0	2.3	1	1	0	2	2	2	1	Putative	ATP-dependant	zinc	protease
GSH-S_ATP	PF02955.11	gi|292656928|ref|YP_003536825.1|	-	2.1e-06	27.0	0.0	4.2e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
Asp_protease_2	PF13650.1	gi|292656928|ref|YP_003536825.1|	-	0.00022	21.6	0.7	0.00051	20.4	0.5	1.6	1	0	0	1	1	1	1	Aspartyl	protease
ATP-grasp_3	PF02655.9	gi|292656928|ref|YP_003536825.1|	-	0.0044	16.9	0.0	0.029	14.2	0.0	2.1	1	1	0	1	1	1	1	ATP-grasp	domain
gag-asp_proteas	PF13975.1	gi|292656928|ref|YP_003536825.1|	-	0.012	15.3	0.1	0.024	14.4	0.1	1.5	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
RVP	PF00077.15	gi|292656928|ref|YP_003536825.1|	-	0.095	12.6	0.1	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Retroviral	aspartyl	protease
HhH-GPD	PF00730.20	gi|292656929|ref|YP_003536826.1|	-	3.9e-19	68.9	0.0	4.9e-19	68.6	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
DUF1441	PF07278.6	gi|292656929|ref|YP_003536826.1|	-	0.096	12.3	0.1	0.14	11.7	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
3HCDH_N	PF02737.13	gi|292656930|ref|YP_003536827.1|	-	3.1e-68	228.9	0.2	5.4e-68	228.1	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH	PF00378.15	gi|292656930|ref|YP_003536827.1|	-	1.2e-60	204.6	0.0	1.8e-60	204.0	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
3HCDH	PF00725.17	gi|292656930|ref|YP_003536827.1|	-	6.6e-50	167.4	3.4	1.3e-33	115.2	0.1	3.5	3	0	0	3	3	3	3	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|292656930|ref|YP_003536827.1|	-	2.6e-10	40.2	0.0	4.5e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|292656930|ref|YP_003536827.1|	-	1.5e-05	25.3	1.9	8e-05	22.9	1.3	2.2	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|292656930|ref|YP_003536827.1|	-	2.5e-05	24.1	0.1	6.8e-05	22.7	0.1	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|292656930|ref|YP_003536827.1|	-	0.0075	15.8	0.1	0.017	14.7	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292656930|ref|YP_003536827.1|	-	0.035	13.4	0.1	0.061	12.6	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DFP	PF04127.10	gi|292656930|ref|YP_003536827.1|	-	0.054	13.1	0.1	0.35	10.4	0.1	2.3	2	0	0	2	2	2	0	DNA	/	pantothenate	metabolism	flavoprotein
Phage_integrase	PF00589.17	gi|292656931|ref|YP_003536828.1|	-	1.1e-18	67.5	0.0	1.9e-18	66.7	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|292656931|ref|YP_003536828.1|	-	3.6e-07	30.4	0.2	1.1e-06	28.9	0.1	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|292656931|ref|YP_003536828.1|	-	0.00092	19.3	1.0	0.00092	19.3	0.7	3.0	2	2	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Malate_DH	PF12434.3	gi|292656931|ref|YP_003536828.1|	-	0.0088	15.7	0.2	0.034	13.8	0.2	2.0	1	0	0	1	1	1	1	Malate	dehydrogenase	enzyme
Phage_integrase	PF00589.17	gi|292656933|ref|YP_003536830.1|	-	2.1e-16	60.0	0.0	3.2e-16	59.4	0.0	1.2	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|292656933|ref|YP_003536830.1|	-	0.00019	21.6	0.3	0.00072	19.8	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|292656933|ref|YP_003536830.1|	-	0.0014	18.7	1.0	0.0089	16.1	0.1	2.5	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Malate_DH	PF12434.3	gi|292656933|ref|YP_003536830.1|	-	0.012	15.2	0.1	0.034	13.8	0.1	1.7	1	0	0	1	1	1	0	Malate	dehydrogenase	enzyme
YebF	PF13995.1	gi|292656933|ref|YP_003536830.1|	-	0.055	13.4	0.1	7.2	6.7	0.0	2.5	2	0	0	2	2	2	0	YebF-like	protein
DEDD_Tnp_IS110	PF01548.12	gi|292656935|ref|YP_003536832.1|	-	3.7e-24	85.0	0.9	6.7e-24	84.1	0.6	1.4	1	0	0	1	1	1	1	Transposase
Transposase_20	PF02371.11	gi|292656935|ref|YP_003536832.1|	-	1.1e-21	76.7	0.0	2.9e-21	75.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
Zwint	PF15556.1	gi|292656935|ref|YP_003536832.1|	-	0.015	14.5	0.0	0.022	13.9	0.0	1.2	1	0	0	1	1	1	0	ZW10	interactor
Rbsn	PF11464.3	gi|292656935|ref|YP_003536832.1|	-	0.16	11.5	1.3	4.5	6.9	0.2	2.9	2	0	0	2	2	2	0	Rabenosyn	Rab	binding	domain
HTH_24	PF13412.1	gi|292656936|ref|YP_003536833.1|	-	4.6e-05	22.7	0.0	6.6e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|292656936|ref|YP_003536833.1|	-	0.0063	16.0	0.2	0.0089	15.6	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292656936|ref|YP_003536833.1|	-	0.0066	16.7	0.2	0.0086	16.3	0.2	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|292656936|ref|YP_003536833.1|	-	0.05	13.1	0.0	0.074	12.6	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
MarR_2	PF12802.2	gi|292656936|ref|YP_003536833.1|	-	0.092	12.4	0.1	0.13	11.9	0.1	1.3	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.1	gi|292656936|ref|YP_003536833.1|	-	0.094	12.5	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|292656936|ref|YP_003536833.1|	-	0.12	12.4	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Tn7_Tnp_TnsA_C	PF08721.6	gi|292656936|ref|YP_003536833.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	TnsA	endonuclease	C	terminal
HTH_20	PF12840.2	gi|292656937|ref|YP_003536834.1|	-	0.00014	21.5	2.1	0.0018	18.0	1.5	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656937|ref|YP_003536834.1|	-	0.0049	16.5	0.3	3.3	7.4	0.1	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HNH	PF01844.18	gi|292656938|ref|YP_003536835.1|	-	0.00033	20.4	3.4	0.00051	19.8	2.4	1.3	1	0	0	1	1	1	1	HNH	endonuclease
RRN7	PF11781.3	gi|292656938|ref|YP_003536835.1|	-	0.069	12.6	1.0	7.2	6.2	0.0	2.5	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
UvrD_C	PF13361.1	gi|292656940|ref|YP_003536837.1|	-	0.15	11.5	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	UvrD-like	helicase	C-terminal	domain
UvrD-helicase	PF00580.16	gi|292656941|ref|YP_003536838.1|	-	4.1e-15	55.8	0.0	7.8e-15	54.9	0.0	1.3	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|292656941|ref|YP_003536838.1|	-	2.1e-12	47.1	0.0	3e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.2	gi|292656941|ref|YP_003536838.1|	-	3.1e-09	36.5	0.0	1e-08	34.8	0.0	1.9	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.1	gi|292656941|ref|YP_003536838.1|	-	8.6e-06	25.8	0.1	0.16	12.0	0.0	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_22	PF13401.1	gi|292656941|ref|YP_003536838.1|	-	0.0056	16.8	0.0	7.3	6.7	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|292656941|ref|YP_003536838.1|	-	0.015	15.0	0.0	0.055	13.2	0.0	1.9	1	0	0	1	1	1	0	Part	of	AAA	domain
Viral_helicase1	PF01443.13	gi|292656941|ref|YP_003536838.1|	-	0.03	13.8	0.1	20	4.6	0.0	3.3	3	0	0	3	3	3	0	Viral	(Superfamily	1)	RNA	helicase
Phage_integrase	PF00589.17	gi|292656943|ref|YP_003536840.1|	-	3.3e-24	85.4	0.0	3.9e-24	85.2	0.0	1.1	1	0	0	1	1	1	1	Phage	integrase	family
DDE_Tnp_1	PF01609.16	gi|292656944|ref|YP_003536841.1|	-	5.4e-24	84.9	0.0	7e-24	84.5	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|292656944|ref|YP_003536841.1|	-	0.014	14.4	0.0	0.022	13.7	0.0	1.3	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
DUF1814	PF08843.6	gi|292656946|ref|YP_003536843.1|	-	0.15	11.8	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
HTH_20	PF12840.2	gi|292656947|ref|YP_003536844.1|	-	9.6e-12	44.5	0.4	8.8e-06	25.4	0.1	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|292656947|ref|YP_003536844.1|	-	4.8e-11	42.1	0.8	3.8e-05	23.2	0.1	2.5	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.14	gi|292656947|ref|YP_003536844.1|	-	6e-10	38.6	0.0	1.4e-06	27.8	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292656947|ref|YP_003536844.1|	-	1.1e-08	34.4	0.3	3.3e-05	23.3	0.1	2.6	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656947|ref|YP_003536844.1|	-	9.6e-08	31.2	0.1	0.00072	18.8	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|292656947|ref|YP_003536844.1|	-	5.4e-07	29.6	0.4	0.0011	19.0	0.0	3.0	3	0	0	3	3	3	1	Transcriptional	regulator
HTH_27	PF13463.1	gi|292656947|ref|YP_003536844.1|	-	1.1e-06	28.8	0.2	0.0017	18.6	0.1	2.6	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|292656947|ref|YP_003536844.1|	-	1.4e-06	27.8	0.2	0.023	14.3	0.0	2.4	2	0	0	2	2	2	2	HTH	domain
MarR	PF01047.17	gi|292656947|ref|YP_003536844.1|	-	4e-05	23.2	0.0	0.0028	17.3	0.0	2.5	2	0	0	2	2	2	1	MarR	family
Sigma70_r3	PF04539.11	gi|292656947|ref|YP_003536844.1|	-	7.5e-05	22.5	0.2	0.092	12.6	0.0	3.1	3	0	0	3	3	3	1	Sigma-70	region	3
HTH_36	PF13730.1	gi|292656947|ref|YP_003536844.1|	-	0.00013	21.9	0.0	0.16	12.1	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|292656947|ref|YP_003536844.1|	-	0.00016	21.5	0.2	0.56	10.2	0.0	3.6	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|292656947|ref|YP_003536844.1|	-	0.00044	19.9	0.0	0.42	10.4	0.0	2.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|292656947|ref|YP_003536844.1|	-	0.0006	19.9	1.2	0.014	15.4	0.3	2.5	1	1	1	2	2	2	1	Winged	helix-turn	helix
HTH_7	PF02796.10	gi|292656947|ref|YP_003536844.1|	-	0.00096	18.9	0.0	0.29	11.0	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_10	PF04967.7	gi|292656947|ref|YP_003536844.1|	-	0.0011	18.5	0.0	0.044	13.3	0.0	2.5	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|292656947|ref|YP_003536844.1|	-	0.0018	17.7	0.4	0.85	9.2	0.0	3.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656947|ref|YP_003536844.1|	-	0.0034	16.9	0.2	0.29	10.8	0.0	2.9	2	0	0	2	2	2	1	Homeodomain-like	domain
GntR	PF00392.16	gi|292656947|ref|YP_003536844.1|	-	0.0037	16.6	2.0	0.74	9.2	0.0	3.8	4	0	0	4	4	4	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.15	gi|292656947|ref|YP_003536844.1|	-	0.0079	15.8	0.0	0.32	10.7	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TFIIE_alpha	PF02002.12	gi|292656947|ref|YP_003536844.1|	-	0.017	14.6	0.0	0.13	11.7	0.0	2.1	2	0	0	2	2	2	0	TFIIE	alpha	subunit
DUF2250	PF10007.4	gi|292656947|ref|YP_003536844.1|	-	0.055	13.3	0.0	0.34	10.8	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_CodY	PF08222.6	gi|292656947|ref|YP_003536844.1|	-	0.071	12.4	0.0	0.19	11.1	0.0	1.6	2	0	0	2	2	1	0	CodY	helix-turn-helix	domain
HTH_13	PF11972.3	gi|292656947|ref|YP_003536844.1|	-	0.08	12.7	0.9	6.5	6.6	0.0	2.8	3	0	0	3	3	2	0	HTH	DNA	binding	domain
HTH_15	PF12324.3	gi|292656947|ref|YP_003536844.1|	-	0.11	12.1	0.2	1.3	8.7	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
Clat_adaptor_s	PF01217.15	gi|292656947|ref|YP_003536844.1|	-	0.17	11.6	0.0	0.3	10.8	0.0	1.3	1	0	0	1	1	1	0	Clathrin	adaptor	complex	small	chain
HhH-GPD	PF00730.20	gi|292656948|ref|YP_003536845.1|	-	1e-13	51.4	0.0	1.3e-13	51.1	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|292656948|ref|YP_003536845.1|	-	2.1e-05	23.9	0.0	6.2e-05	22.4	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|292656948|ref|YP_003536845.1|	-	0.00026	21.0	3.8	0.0005	20.1	2.6	1.5	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HATPase_c	PF02518.21	gi|292656949|ref|YP_003536846.1|	-	6.4e-19	67.7	0.2	3.1e-18	65.4	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|292656949|ref|YP_003536846.1|	-	1.9e-09	37.3	1.5	1e-08	35.0	0.6	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|292656949|ref|YP_003536846.1|	-	0.039	13.6	0.0	0.065	12.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
IL5	PF02025.10	gi|292656949|ref|YP_003536846.1|	-	0.046	13.7	0.0	0.081	12.9	0.0	1.3	1	0	0	1	1	1	0	Interleukin	5
ChaB	PF06150.7	gi|292656949|ref|YP_003536846.1|	-	0.096	12.4	2.9	9.2	6.1	0.0	2.7	2	1	0	2	2	2	0	ChaB
HTH_10	PF04967.7	gi|292656950|ref|YP_003536847.1|	-	2.5e-14	52.5	0.2	5.1e-14	51.5	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_2	PF13185.1	gi|292656950|ref|YP_003536847.1|	-	2.8e-13	50.5	2.5	3.5e-13	50.2	0.7	2.0	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.1	gi|292656950|ref|YP_003536847.1|	-	2e-07	31.1	0.1	5.7e-07	29.6	0.1	1.8	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.5	gi|292656950|ref|YP_003536847.1|	-	2.9e-06	27.2	2.8	2.5e-05	24.2	0.1	3.4	3	1	0	3	3	3	1	PAS	fold
HTH_20	PF12840.2	gi|292656950|ref|YP_003536847.1|	-	0.0016	18.2	0.1	0.0066	16.2	0.1	2.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
GAF	PF01590.21	gi|292656950|ref|YP_003536847.1|	-	0.008	16.3	0.1	0.018	15.2	0.1	1.6	1	0	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.11	gi|292656950|ref|YP_003536847.1|	-	0.028	13.7	1.6	0.048	12.9	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
PAS_9	PF13426.1	gi|292656950|ref|YP_003536847.1|	-	0.064	13.6	0.0	1.2	9.5	0.0	2.9	3	0	0	3	3	3	0	PAS	domain
GerE	PF00196.14	gi|292656950|ref|YP_003536847.1|	-	0.14	11.4	0.3	1.5	8.1	0.0	2.7	2	1	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Response_reg	PF00072.19	gi|292656952|ref|YP_003536849.1|	-	1.4e-16	60.4	0.1	2e-16	59.9	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|292656952|ref|YP_003536849.1|	-	6.1e-06	26.1	1.6	6.1e-06	26.1	1.1	2.2	2	0	0	2	2	2	1	HalX	domain
TOBE_3	PF12857.2	gi|292656952|ref|YP_003536849.1|	-	0.023	14.5	0.3	0.05	13.4	0.2	1.5	1	0	0	1	1	1	0	TOBE-like	domain
HTH_20	PF12840.2	gi|292656953|ref|YP_003536850.1|	-	1.8e-09	37.2	0.0	2.7e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|292656953|ref|YP_003536850.1|	-	7.7e-08	31.8	0.0	1.3e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|292656953|ref|YP_003536850.1|	-	2e-07	30.6	0.0	2.7e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|292656953|ref|YP_003536850.1|	-	4.9e-06	26.0	0.1	1e-05	25.0	0.0	1.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656953|ref|YP_003536850.1|	-	4.2e-05	22.8	0.0	7.5e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|292656953|ref|YP_003536850.1|	-	0.00054	19.5	0.1	0.00087	18.9	0.1	1.4	1	0	0	1	1	1	1	MarR	family
LZ_Tnp_IS481	PF13011.1	gi|292656953|ref|YP_003536850.1|	-	0.0077	16.5	0.1	0.012	15.8	0.0	1.3	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
HTH_AsnC-type	PF13404.1	gi|292656953|ref|YP_003536850.1|	-	0.009	15.5	0.2	0.016	14.6	0.1	1.5	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|292656953|ref|YP_003536850.1|	-	0.015	14.9	0.1	0.026	14.2	0.1	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|292656953|ref|YP_003536850.1|	-	0.018	14.9	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|292656953|ref|YP_003536850.1|	-	0.026	14.1	0.0	0.049	13.2	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
TetR_N	PF00440.18	gi|292656953|ref|YP_003536850.1|	-	0.032	13.8	0.1	0.12	12.0	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
ArsR	PF09824.4	gi|292656953|ref|YP_003536850.1|	-	0.068	12.4	0.0	0.079	12.2	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
LacI	PF00356.16	gi|292656953|ref|YP_003536850.1|	-	0.068	12.7	0.6	0.18	11.4	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
FUR	PF01475.14	gi|292656953|ref|YP_003536850.1|	-	0.082	12.8	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Rrf2	PF02082.15	gi|292656953|ref|YP_003536850.1|	-	0.087	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
PadR	PF03551.9	gi|292656953|ref|YP_003536850.1|	-	0.098	12.4	0.0	0.23	11.2	0.0	1.7	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
HATPase_c	PF02518.21	gi|292656954|ref|YP_003536851.1|	-	3.2e-15	55.8	0.1	7.4e-15	54.6	0.0	1.6	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|292656954|ref|YP_003536851.1|	-	6.2e-07	29.2	0.5	3e-06	27.0	0.0	2.1	1	1	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|292656954|ref|YP_003536851.1|	-	6.3e-05	22.6	0.0	0.00026	20.7	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
PAS_9	PF13426.1	gi|292656954|ref|YP_003536851.1|	-	0.00012	22.4	0.0	0.00068	19.9	0.0	2.2	1	1	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|292656954|ref|YP_003536851.1|	-	0.00057	19.9	0.4	0.0022	18.0	0.3	2.1	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|292656954|ref|YP_003536851.1|	-	0.0011	18.6	0.0	0.0028	17.4	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.1	gi|292656954|ref|YP_003536851.1|	-	0.0038	16.8	0.0	0.0091	15.6	0.0	1.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.2	gi|292656954|ref|YP_003536851.1|	-	0.047	13.7	0.1	0.28	11.1	0.1	2.3	1	1	0	1	1	1	0	PAS	fold
RDD	PF06271.7	gi|292656955|ref|YP_003536852.1|	-	2.3e-16	59.9	1.4	2.8e-16	59.6	1.0	1.0	1	0	0	1	1	1	1	RDD	family
DUF4010	PF13194.1	gi|292656956|ref|YP_003536853.1|	-	5.8e-52	176.0	21.3	5.8e-52	176.0	14.8	2.9	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.11	gi|292656956|ref|YP_003536853.1|	-	1.2e-07	31.6	8.3	8.5e-06	25.6	1.1	4.6	4	1	0	4	4	4	3	MgtC	family
DsbB	PF02600.11	gi|292656957|ref|YP_003536854.1|	-	6.1e-29	100.8	8.7	9.6e-29	100.1	6.0	1.3	1	1	0	1	1	1	1	Disulfide	bond	formation	protein	DsbB
Rubi_NSP_C	PF12601.3	gi|292656957|ref|YP_003536854.1|	-	0.33	10.8	2.0	0.52	10.2	0.0	2.3	3	0	0	3	3	3	0	Rubivirus	non-structural	protein
FAD_binding_7	PF03441.9	gi|292656958|ref|YP_003536855.1|	-	1.5e-74	250.6	1.5	1.9e-74	250.3	1.1	1.1	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|292656958|ref|YP_003536855.1|	-	1.6e-42	145.0	0.0	4.1e-42	143.7	0.0	1.7	2	0	0	2	2	2	1	DNA	photolyase
Usp	PF00582.21	gi|292656958|ref|YP_003536855.1|	-	0.028	14.6	0.1	0.07	13.3	0.1	1.6	1	0	0	1	1	1	0	Universal	stress	protein	family
DUF1469	PF07332.6	gi|292656959|ref|YP_003536856.1|	-	0.36	10.5	4.9	0.55	9.9	3.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
SpoVR	PF04293.8	gi|292656960|ref|YP_003536857.1|	-	7.1e-85	284.9	7.2	8.3e-72	241.8	1.1	2.1	2	0	0	2	2	2	2	SpoVR	like	protein
DUF444	PF04285.7	gi|292656961|ref|YP_003536858.1|	-	2.3e-95	319.7	0.2	2.6e-95	319.5	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
VWA_2	PF13519.1	gi|292656961|ref|YP_003536858.1|	-	0.018	15.1	0.1	0.48	10.5	0.0	2.3	1	1	0	2	2	2	0	von	Willebrand	factor	type	A	domain
DUF3738	PF12543.3	gi|292656961|ref|YP_003536858.1|	-	0.11	12.0	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3738)
AAA_PrkA	PF08298.6	gi|292656962|ref|YP_003536859.1|	-	1.1e-14	53.9	0.0	1.9e-11	43.2	0.0	2.9	2	1	0	2	2	2	2	PrkA	AAA	domain
PrkA	PF06798.7	gi|292656962|ref|YP_003536859.1|	-	4.4e-06	26.1	0.1	3.7e-05	23.1	0.0	2.1	1	1	0	1	1	1	1	PrkA	serine	protein	kinase	C-terminal	domain
PrkA	PF06798.7	gi|292656963|ref|YP_003536860.1|	-	4.7e-76	255.4	6.3	4.7e-76	255.4	4.4	1.6	2	0	0	2	2	2	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.6	gi|292656963|ref|YP_003536860.1|	-	1.3e-62	211.5	0.0	2.3e-62	210.7	0.0	1.4	1	1	0	1	1	1	1	PrkA	AAA	domain
CLTH	PF10607.4	gi|292656963|ref|YP_003536860.1|	-	0.11	12.1	0.2	4.4	6.9	0.0	2.9	3	0	0	3	3	3	0	CTLH/CRA	C-terminal	to	LisH	motif	domain
Rsa3	PF14615.1	gi|292656963|ref|YP_003536860.1|	-	1.1	8.5	4.5	0.92	8.8	0.2	3.0	3	1	0	3	3	3	0	Ribosome-assembly	protein	3
UPF0179	PF03684.8	gi|292656965|ref|YP_003536862.1|	-	1.4e-50	170.5	0.0	1.6e-50	170.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.1	gi|292656965|ref|YP_003536862.1|	-	0.0079	16.1	0.7	0.026	14.5	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
Cofilin_ADF	PF00241.15	gi|292656965|ref|YP_003536862.1|	-	0.16	11.8	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Cofilin/tropomyosin-type	actin-binding	protein
AstE_AspA	PF04952.9	gi|292656966|ref|YP_003536863.1|	-	4.4e-10	38.9	0.0	5.6e-10	38.5	0.0	1.3	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
DUF309	PF03745.9	gi|292656967|ref|YP_003536864.1|	-	3.2e-15	55.3	0.5	4.5e-15	54.8	0.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Aldo_ket_red	PF00248.16	gi|292656967|ref|YP_003536864.1|	-	0.046	12.5	0.0	0.072	11.9	0.0	1.3	1	0	0	1	1	1	0	Aldo/keto	reductase	family
JCAD	PF15351.1	gi|292656968|ref|YP_003536865.1|	-	0.049	11.2	1.5	0.061	10.9	1.0	1.0	1	0	0	1	1	1	0	Junctional	protein	associated	with	coronary	artery	disease
DUF1771	PF08590.5	gi|292656969|ref|YP_003536866.1|	-	0.017	15.1	0.3	0.029	14.3	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1771)
TPR_4	PF07721.9	gi|292656969|ref|YP_003536866.1|	-	0.082	13.3	2.9	0.2	12.1	2.0	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Inositol_P	PF00459.20	gi|292656970|ref|YP_003536867.1|	-	5.4e-52	176.7	2.1	6.5e-52	176.4	1.5	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
HTH_AsnC-type	PF13404.1	gi|292656971|ref|YP_003536868.1|	-	8.6e-17	60.3	1.2	1.8e-16	59.4	0.8	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|292656971|ref|YP_003536868.1|	-	4.8e-16	57.8	0.0	7.5e-16	57.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|292656971|ref|YP_003536868.1|	-	1.5e-15	56.6	0.0	2.3e-15	56.0	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
MarR_2	PF12802.2	gi|292656971|ref|YP_003536868.1|	-	1.4e-08	34.2	0.1	2.8e-07	30.0	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|292656971|ref|YP_003536868.1|	-	6.1e-08	32.3	0.0	1.1e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|292656971|ref|YP_003536868.1|	-	1.1e-05	25.0	0.0	2.5e-05	23.8	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|292656971|ref|YP_003536868.1|	-	1.9e-05	24.1	0.0	6.6e-05	22.4	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292656971|ref|YP_003536868.1|	-	0.00087	18.8	0.0	0.0019	17.8	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|292656971|ref|YP_003536868.1|	-	0.0029	17.8	0.0	0.026	14.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Sigma70_r4	PF04545.11	gi|292656971|ref|YP_003536868.1|	-	0.0034	16.6	1.3	2.8	7.3	0.0	3.1	3	0	0	3	3	3	1	Sigma-70,	region	4
Fe_dep_repress	PF01325.14	gi|292656971|ref|YP_003536868.1|	-	0.0054	16.6	0.0	0.0081	16.0	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.1	gi|292656971|ref|YP_003536868.1|	-	0.0097	15.4	0.0	0.018	14.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|292656971|ref|YP_003536868.1|	-	0.012	15.3	0.0	0.025	14.2	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|292656971|ref|YP_003536868.1|	-	0.031	13.9	0.0	0.05	13.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_ISL3	PF13542.1	gi|292656971|ref|YP_003536868.1|	-	0.05	12.7	0.1	0.087	12.0	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.7	gi|292656971|ref|YP_003536868.1|	-	0.052	13.0	0.0	0.14	11.6	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2774	PF11242.3	gi|292656971|ref|YP_003536868.1|	-	0.076	13.0	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
Myb_DNA-bind_6	PF13921.1	gi|292656971|ref|YP_003536868.1|	-	0.095	12.8	0.1	1.2	9.2	0.0	2.4	3	0	0	3	3	2	0	Myb-like	DNA-binding	domain
GYD	PF08734.6	gi|292656971|ref|YP_003536868.1|	-	0.12	12.1	0.1	0.2	11.3	0.1	1.4	1	0	0	1	1	1	0	GYD	domain
DUF63	PF01889.12	gi|292656972|ref|YP_003536869.1|	-	9.2e-36	124.3	7.1	1.7e-34	120.1	5.0	2.4	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
ApoO	PF09769.4	gi|292656972|ref|YP_003536869.1|	-	2.6	7.7	4.0	26	4.4	0.6	2.5	2	0	0	2	2	2	0	Apolipoprotein	O
YcaO	PF02624.11	gi|292656973|ref|YP_003536870.1|	-	3.6e-67	227.2	8.3	3.6e-67	227.2	5.8	1.4	2	0	0	2	2	2	1	YcaO-like	family
SHMT	PF00464.14	gi|292656975|ref|YP_003536872.1|	-	6.2e-155	515.4	0.0	7.4e-155	515.2	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.16	gi|292656975|ref|YP_003536872.1|	-	2.1e-10	40.1	0.0	3.8e-10	39.2	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|292656975|ref|YP_003536872.1|	-	1.9e-06	27.2	0.1	1.6e-05	24.2	0.0	2.0	1	1	0	1	1	1	1	Beta-eliminating	lyase
Trypsin_2	PF13365.1	gi|292656975|ref|YP_003536872.1|	-	0.073	13.0	0.0	0.13	12.2	0.0	1.6	1	1	0	1	1	1	0	Trypsin-like	peptidase	domain
DUF211	PF02680.9	gi|292656976|ref|YP_003536873.1|	-	5.9e-32	109.3	0.3	6.5e-32	109.1	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
VIT1	PF01988.14	gi|292656977|ref|YP_003536874.1|	-	7.1e-17	61.6	19.3	6.5e-15	55.2	13.4	2.0	1	1	0	1	1	1	1	VIT	family
DUF1127	PF06568.6	gi|292656977|ref|YP_003536874.1|	-	0.068	12.6	0.1	0.17	11.3	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1127)
DUF4491	PF14898.1	gi|292656977|ref|YP_003536874.1|	-	0.38	10.9	3.2	0.7	10.0	0.0	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4491)
MerE	PF05052.7	gi|292656977|ref|YP_003536874.1|	-	2	8.4	9.6	0.087	12.8	0.6	2.4	2	1	0	2	2	2	0	MerE	protein
THF_DHG_CYH_C	PF02882.14	gi|292656978|ref|YP_003536875.1|	-	1.5e-67	225.6	2.3	2.1e-67	225.1	1.6	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|292656978|ref|YP_003536875.1|	-	6.7e-39	132.5	0.1	1e-38	131.9	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
GreA_GreB	PF01272.14	gi|292656978|ref|YP_003536875.1|	-	0.015	14.9	0.1	0.29	10.8	0.0	2.3	2	0	0	2	2	2	0	Transcription	elongation	factor,	GreA/GreB,	C-term
SBP_bac_5	PF00496.17	gi|292656978|ref|YP_003536875.1|	-	0.071	11.9	0.0	0.14	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
zf-RING_3	PF14369.1	gi|292656979|ref|YP_003536876.1|	-	0.12	12.4	0.1	0.22	11.5	0.0	1.6	2	0	0	2	2	2	0	zinc-finger
HypA	PF01155.14	gi|292656980|ref|YP_003536877.1|	-	0.0034	17.0	0.8	0.0057	16.3	0.6	1.3	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DUF1451	PF07295.6	gi|292656980|ref|YP_003536877.1|	-	0.036	13.8	0.6	0.11	12.2	0.4	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
TF_Zn_Ribbon	PF08271.7	gi|292656980|ref|YP_003536877.1|	-	0.045	13.0	1.0	0.09	12.1	0.7	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
BRK	PF07533.11	gi|292656980|ref|YP_003536877.1|	-	0.11	11.9	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	BRK	domain
Zn_Tnp_IS1595	PF12760.2	gi|292656980|ref|YP_003536877.1|	-	1.3	8.9	6.0	7.1	6.5	0.4	2.4	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|292656980|ref|YP_003536877.1|	-	2.1	8.0	5.2	7.6	6.2	1.1	2.6	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
PadR	PF03551.9	gi|292656982|ref|YP_003536879.1|	-	8.1e-17	60.7	2.4	1e-16	60.4	1.7	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|292656982|ref|YP_003536879.1|	-	0.00022	21.5	0.1	0.00027	21.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.6	gi|292656982|ref|YP_003536879.1|	-	0.0028	17.2	0.0	0.0042	16.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.1	gi|292656982|ref|YP_003536879.1|	-	0.0062	16.3	0.1	0.008	15.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|292656982|ref|YP_003536879.1|	-	0.046	13.7	0.0	0.055	13.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HemN_C	PF06969.11	gi|292656982|ref|YP_003536879.1|	-	0.1	12.6	0.0	0.16	12.0	0.0	1.4	1	1	0	1	1	1	0	HemN	C-terminal	domain
MarR_2	PF12802.2	gi|292656982|ref|YP_003536879.1|	-	0.17	11.5	0.4	4.3	7.0	0.1	2.2	2	0	0	2	2	2	0	MarR	family
UPF0118	PF01594.11	gi|292656983|ref|YP_003536880.1|	-	3.8e-25	88.5	36.4	2.8e-24	85.7	25.2	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF20
Aminotran_3	PF00202.16	gi|292656984|ref|YP_003536881.1|	-	2.1e-63	214.2	0.0	1.1e-62	211.8	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class-III
TAT_signal	PF10518.4	gi|292656985|ref|YP_003536882.1|	-	0.15	12.1	1.9	0.47	10.5	1.3	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
XPG_I	PF00867.13	gi|292656986|ref|YP_003536883.1|	-	7e-26	90.1	0.1	1.4e-25	89.1	0.0	1.5	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|292656986|ref|YP_003536883.1|	-	7.6e-13	48.5	0.0	1.3e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|292656986|ref|YP_003536883.1|	-	5.2e-05	23.4	0.1	0.00014	22.0	0.0	1.8	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
5_3_exonuc_N	PF02739.11	gi|292656986|ref|YP_003536883.1|	-	0.0021	17.4	0.0	0.0044	16.4	0.0	1.7	1	1	0	1	1	1	1	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
Acetyltransf_1	PF00583.19	gi|292656987|ref|YP_003536884.1|	-	0.00037	20.4	0.0	0.00061	19.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|292656987|ref|YP_003536884.1|	-	0.021	14.9	0.0	0.038	14.1	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656987|ref|YP_003536884.1|	-	0.023	14.8	0.1	0.053	13.6	0.0	1.5	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Methyltransf_11	PF08241.7	gi|292656988|ref|YP_003536885.1|	-	2.1e-17	63.3	0.0	3.4e-17	62.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|292656988|ref|YP_003536885.1|	-	4.5e-12	45.9	0.0	6.7e-12	45.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|292656988|ref|YP_003536885.1|	-	1.8e-10	40.5	0.0	2.2e-10	40.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|292656988|ref|YP_003536885.1|	-	7.9e-10	38.2	0.0	1.5e-09	37.3	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|292656988|ref|YP_003536885.1|	-	4e-08	33.5	0.0	7.7e-08	32.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|292656988|ref|YP_003536885.1|	-	5.6e-08	33.1	0.0	9.3e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|292656988|ref|YP_003536885.1|	-	5.8e-07	30.0	0.2	1.4e-06	28.8	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|292656988|ref|YP_003536885.1|	-	0.0015	18.1	0.0	0.0031	17.1	0.0	1.6	1	1	0	1	1	1	1	Hypothetical	methyltransferase
MetW	PF07021.7	gi|292656988|ref|YP_003536885.1|	-	0.0045	16.3	0.0	0.0067	15.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|292656988|ref|YP_003536885.1|	-	0.087	12.8	2.0	0.9	9.5	1.4	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
DUF3054	PF11255.3	gi|292656989|ref|YP_003536886.1|	-	4.8e-29	100.4	10.8	5.5e-29	100.2	7.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
HGWP	PF03578.10	gi|292656989|ref|YP_003536886.1|	-	0.0033	16.6	0.3	0.008	15.4	0.2	1.7	1	0	0	1	1	1	1	HGWP	repeat
MFS_1	PF07690.11	gi|292656990|ref|YP_003536887.1|	-	8.6e-28	97.0	61.4	3.1e-19	68.9	20.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|292656990|ref|YP_003536887.1|	-	0.12	10.9	29.7	0.02	13.4	8.6	2.4	3	0	0	3	3	3	0	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|292656990|ref|YP_003536887.1|	-	0.36	8.8	23.9	0.036	12.2	4.8	2.6	2	1	0	2	2	2	0	Transmembrane	secretion	effector
PepSY_TM_1	PF13172.1	gi|292656990|ref|YP_003536887.1|	-	1.3	8.8	12.0	0.96	9.2	1.7	4.0	2	0	0	2	2	2	0	PepSY-associated	TM	helix
IncA	PF04156.9	gi|292656991|ref|YP_003536888.1|	-	0.00015	21.4	4.9	0.00019	21.1	3.4	1.0	1	0	0	1	1	1	1	IncA	protein
OCD_Mu_crystall	PF02423.10	gi|292656992|ref|YP_003536889.1|	-	2.4e-62	210.5	2.9	3e-62	210.1	2.0	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
F420_oxidored	PF03807.12	gi|292656992|ref|YP_003536889.1|	-	0.0008	19.7	0.2	0.0017	18.7	0.2	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.15	gi|292656992|ref|YP_003536889.1|	-	0.088	12.9	0.0	0.14	12.2	0.0	1.2	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
eRF1_1	PF03463.10	gi|292656993|ref|YP_003536890.1|	-	7.6e-32	109.6	0.3	1.1e-31	109.1	0.2	1.2	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|292656993|ref|YP_003536890.1|	-	3.1e-24	85.4	0.1	3.1e-24	85.4	0.1	2.2	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|292656993|ref|YP_003536890.1|	-	2.1e-16	60.4	0.0	4.2e-16	59.4	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
Tachylectin	PF14517.1	gi|292656993|ref|YP_003536890.1|	-	0.076	12.3	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Tachylectin
DUF4013	PF13197.1	gi|292656994|ref|YP_003536891.1|	-	2.7e-33	114.6	20.2	2.7e-33	114.6	14.0	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
DUF4492	PF14899.1	gi|292656994|ref|YP_003536891.1|	-	0.17	11.3	2.2	0.31	10.5	0.8	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4492)
Sensor	PF13796.1	gi|292656994|ref|YP_003536891.1|	-	0.93	9.0	19.6	0.49	9.9	0.1	3.0	3	1	0	3	3	3	0	Putative	sensor
DUF4017	PF13209.1	gi|292656994|ref|YP_003536891.1|	-	6.2	6.6	12.8	2.7	7.8	0.8	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4017)
DUF4013	PF13197.1	gi|292656995|ref|YP_003536892.1|	-	1.1e-41	142.0	22.9	1.1e-41	142.0	15.9	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
EI24	PF07264.6	gi|292656995|ref|YP_003536892.1|	-	1.4e-05	24.6	21.0	0.0071	15.8	14.6	2.1	1	1	0	1	1	1	1	Etoposide-induced	protein	2.4	(EI24)
Peptidase_M50	PF02163.17	gi|292656995|ref|YP_003536892.1|	-	0.22	10.4	6.7	0.17	10.7	0.8	2.4	1	1	1	2	2	2	0	Peptidase	family	M50
TMP_2	PF06791.8	gi|292656995|ref|YP_003536892.1|	-	0.6	9.6	2.9	2.7	7.5	2.2	1.9	2	0	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
XhlA	PF10779.4	gi|292656995|ref|YP_003536892.1|	-	0.99	9.3	2.9	2.5	8.0	0.0	2.5	2	0	0	2	2	2	0	Haemolysin	XhlA
FbpA	PF05833.6	gi|292656996|ref|YP_003536893.1|	-	1.5e-95	320.4	0.0	1.9e-95	320.1	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|292656996|ref|YP_003536893.1|	-	2.4e-27	94.6	0.0	4.3e-27	93.8	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
THOC7	PF05615.8	gi|292656996|ref|YP_003536893.1|	-	0.081	13.1	4.8	2.5	8.3	0.1	2.5	2	0	0	2	2	2	0	Tho	complex	subunit	7
Med8	PF10232.4	gi|292656996|ref|YP_003536893.1|	-	1.2	8.6	5.3	0.16	11.4	0.2	1.9	2	0	0	2	2	2	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
SDF	PF00375.13	gi|292656998|ref|YP_003536895.1|	-	5.2e-112	374.4	37.9	5.9e-112	374.2	26.3	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
Acetyltransf_1	PF00583.19	gi|292656999|ref|YP_003536896.1|	-	6.5e-15	54.9	0.7	9e-15	54.4	0.5	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|292656999|ref|YP_003536896.1|	-	1.1e-11	44.7	0.0	1.5e-11	44.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292656999|ref|YP_003536896.1|	-	6.5e-10	39.1	0.1	7.9e-10	38.8	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|292656999|ref|YP_003536896.1|	-	2.5e-09	37.0	0.3	5e-09	36.0	0.2	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292656999|ref|YP_003536896.1|	-	4.5e-07	29.5	0.0	6.4e-07	29.0	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.1	gi|292656999|ref|YP_003536896.1|	-	0.0016	18.2	0.0	0.003	17.4	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.1	gi|292656999|ref|YP_003536896.1|	-	0.0026	17.7	0.0	0.003	17.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Autoind_synth	PF00765.12	gi|292656999|ref|YP_003536896.1|	-	0.047	12.9	0.0	0.082	12.1	0.0	1.3	1	0	0	1	1	1	0	Autoinducer	synthetase
MS_channel	PF00924.13	gi|292657000|ref|YP_003536897.1|	-	1.1e-45	155.4	0.1	2.2e-45	154.5	0.0	1.5	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Radical_SAM	PF04055.16	gi|292657001|ref|YP_003536898.1|	-	1.4e-22	80.5	0.0	3.2e-22	79.4	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.19	gi|292657001|ref|YP_003536898.1|	-	4.9e-09	36.1	0.3	1.4e-08	34.6	0.1	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|292657001|ref|YP_003536898.1|	-	0.0094	16.0	0.0	0.025	14.7	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|292657001|ref|YP_003536898.1|	-	0.014	15.5	0.0	0.048	13.7	0.0	2.0	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
tRNA_anti-codon	PF01336.20	gi|292657002|ref|YP_003536899.1|	-	1e-11	44.5	0.1	2.2e-11	43.4	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.18	gi|292657002|ref|YP_003536899.1|	-	6.5e-09	35.7	0.0	2.1e-08	34.1	0.0	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.1	gi|292657002|ref|YP_003536899.1|	-	0.0018	18.1	0.0	0.0049	16.7	0.0	1.7	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-like	PF12869.2	gi|292657002|ref|YP_003536899.1|	-	0.018	14.5	0.1	0.039	13.4	0.0	1.5	1	0	0	1	1	1	0	tRNA_anti-like
RAP1	PF07218.6	gi|292657002|ref|YP_003536899.1|	-	0.054	11.6	3.9	0.076	11.1	2.7	1.2	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
PPP4R2	PF09184.6	gi|292657002|ref|YP_003536899.1|	-	1.1	8.6	17.7	1.8	8.0	12.3	1.3	1	0	0	1	1	1	0	PPP4R2
Yip1	PF04893.12	gi|292657003|ref|YP_003536900.1|	-	6.4e-12	45.3	14.2	8.7e-12	44.8	9.9	1.2	1	0	0	1	1	1	1	Yip1	domain
TK	PF00265.13	gi|292657004|ref|YP_003536901.1|	-	3.9e-48	163.3	0.0	4.4e-48	163.1	0.0	1.0	1	0	0	1	1	1	1	Thymidine	kinase
FMN_red	PF03358.10	gi|292657005|ref|YP_003536902.1|	-	1e-34	119.2	0.0	1.2e-34	118.9	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|292657005|ref|YP_003536902.1|	-	3.7e-07	29.8	0.0	5.3e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
DrsE	PF02635.10	gi|292657006|ref|YP_003536903.1|	-	3.9e-21	75.3	0.0	4.5e-21	75.1	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
HTH_10	PF04967.7	gi|292657007|ref|YP_003536904.1|	-	2.2e-15	55.9	0.0	3.4e-15	55.3	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
SseB_C	PF14581.1	gi|292657007|ref|YP_003536904.1|	-	0.1	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	SseB	protein	C-terminal	domain
Abhydrolase_6	PF12697.2	gi|292657008|ref|YP_003536905.1|	-	7.6e-23	81.5	11.9	1e-22	81.1	8.2	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|292657008|ref|YP_003536905.1|	-	2.8e-12	46.5	0.1	1.5e-11	44.2	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|292657008|ref|YP_003536905.1|	-	6e-06	25.9	1.5	4e-05	23.2	1.0	2.3	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
HhH-GPD	PF00730.20	gi|292657009|ref|YP_003536906.1|	-	3.5e-16	59.4	0.0	5.2e-16	58.8	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|292657009|ref|YP_003536906.1|	-	4.4e-07	29.2	0.0	9.1e-07	28.2	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
BolA	PF01722.13	gi|292657012|ref|YP_003536909.1|	-	2.2e-22	78.8	0.1	2.5e-22	78.6	0.1	1.1	1	0	0	1	1	1	1	BolA-like	protein
Lyase_1	PF00206.15	gi|292657013|ref|YP_003536910.1|	-	3.1e-107	358.3	0.1	4.8e-107	357.7	0.0	1.3	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|292657013|ref|YP_003536910.1|	-	3.4e-25	87.8	0.4	1e-24	86.3	0.3	1.9	1	0	0	1	1	1	1	Fumarase	C	C-terminus
A2L_zn_ribbon	PF08792.5	gi|292657014|ref|YP_003536911.1|	-	0.0024	17.2	0.5	0.23	10.9	0.1	2.2	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292657014|ref|YP_003536911.1|	-	0.0024	17.7	0.4	0.0034	17.2	0.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
C1_4	PF07975.7	gi|292657014|ref|YP_003536911.1|	-	0.0063	16.4	0.1	0.008	16.1	0.1	1.1	1	0	0	1	1	1	1	TFIIH	C1-like	domain
RNA_POL_M_15KD	PF02150.11	gi|292657014|ref|YP_003536911.1|	-	0.012	15.2	1.1	0.12	12.0	0.0	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF3039	PF11238.3	gi|292657014|ref|YP_003536911.1|	-	0.031	13.6	1.2	0.043	13.2	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3039)
PHD	PF00628.24	gi|292657014|ref|YP_003536911.1|	-	0.035	13.7	3.0	1.3	8.7	2.1	2.0	1	1	0	1	1	1	0	PHD-finger
DZR	PF12773.2	gi|292657014|ref|YP_003536911.1|	-	0.051	13.4	0.9	0.11	12.3	0.6	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2296	PF10058.4	gi|292657014|ref|YP_003536911.1|	-	0.062	13.0	0.7	0.077	12.7	0.5	1.3	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
C1_3	PF07649.7	gi|292657014|ref|YP_003536911.1|	-	0.065	13.2	1.0	0.18	11.8	0.0	1.9	2	0	0	2	2	2	0	C1-like	domain
Prok-RING_1	PF14446.1	gi|292657014|ref|YP_003536911.1|	-	0.066	12.9	0.1	2.3	8.0	0.0	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_4	PF13717.1	gi|292657014|ref|YP_003536911.1|	-	0.075	12.7	0.7	2.6	7.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|292657014|ref|YP_003536911.1|	-	0.081	12.5	0.6	2.4	7.8	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|292657014|ref|YP_003536911.1|	-	0.14	12.1	0.5	7.5	6.6	0.0	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-Sec23_Sec24	PF04810.10	gi|292657014|ref|YP_003536911.1|	-	0.17	11.5	1.0	0.48	10.0	0.7	1.7	1	1	0	1	1	1	0	Sec23/Sec24	zinc	finger
zf-C2H2	PF00096.21	gi|292657014|ref|YP_003536911.1|	-	0.27	11.6	1.5	20	5.7	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Rubredoxin	PF00301.15	gi|292657014|ref|YP_003536911.1|	-	0.3	10.9	3.4	5.9	6.8	2.3	2.1	1	1	0	1	1	1	0	Rubredoxin
UPF0547	PF10571.4	gi|292657014|ref|YP_003536911.1|	-	0.32	10.7	4.3	4	7.2	0.8	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.7	gi|292657014|ref|YP_003536911.1|	-	0.93	8.8	4.6	44	3.4	0.1	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|292657014|ref|YP_003536911.1|	-	1.7	8.4	4.8	4.8	7.0	0.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
GatB_N	PF02934.10	gi|292657015|ref|YP_003536912.1|	-	9.6e-74	247.8	0.0	1.4e-73	247.2	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|292657015|ref|YP_003536912.1|	-	2.6e-25	88.8	0.1	4.9e-25	87.9	0.1	1.5	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.9	gi|292657015|ref|YP_003536912.1|	-	7.4e-14	51.6	0.0	1.5e-13	50.6	0.0	1.6	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.5	gi|292657015|ref|YP_003536912.1|	-	0.00078	19.3	2.2	0.0008	19.2	0.4	1.8	2	0	0	2	2	2	1	Yqey-like	protein
DUF2999	PF11212.3	gi|292657015|ref|YP_003536912.1|	-	0.021	14.8	0.0	0.088	12.8	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2999)
tRNA_synt_1c_R1	PF04558.10	gi|292657015|ref|YP_003536912.1|	-	0.094	12.2	0.1	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
DUF4153	PF13687.1	gi|292657016|ref|YP_003536913.1|	-	2.3	7.6	7.9	1.2	8.6	2.7	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4153)
Peptidase_M48	PF01435.13	gi|292657017|ref|YP_003536914.1|	-	2.5e-25	89.4	0.0	3.6e-25	88.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|292657017|ref|YP_003536914.1|	-	2.1e-05	23.6	0.2	4.7e-05	22.5	0.0	1.7	1	1	1	2	2	2	1	BlaR1	peptidase	M56
FTR1	PF03239.9	gi|292657017|ref|YP_003536914.1|	-	0.75	8.6	4.4	0.2	10.5	1.1	1.5	2	0	0	2	2	2	0	Iron	permease	FTR1	family
RseC_MucC	PF04246.7	gi|292657017|ref|YP_003536914.1|	-	9.2	5.8	6.5	34	4.0	2.3	2.2	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
MaoC_dehydratas	PF01575.14	gi|292657018|ref|YP_003536915.1|	-	8e-14	51.0	0.0	1e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|292657018|ref|YP_003536915.1|	-	0.0027	17.5	0.1	0.0041	16.9	0.1	1.3	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
SpoU_methylase	PF00588.14	gi|292657019|ref|YP_003536916.1|	-	5.4e-30	104.1	0.0	8e-30	103.5	0.0	1.3	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Pterin_bind	PF00809.17	gi|292657021|ref|YP_003536918.1|	-	1.4e-29	102.9	0.0	2.4e-29	102.2	0.0	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
MAF_flag10	PF01973.13	gi|292657022|ref|YP_003536919.1|	-	3.6e-24	85.1	0.0	4.5e-24	84.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
Lar_restr_allev	PF14354.1	gi|292657023|ref|YP_003536920.1|	-	0.018	15.3	1.7	0.042	14.1	1.1	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF4131	PF13567.1	gi|292657023|ref|YP_003536920.1|	-	0.041	13.3	0.5	0.063	12.6	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
FAD_binding_7	PF03441.9	gi|292657024|ref|YP_003536921.1|	-	1e-102	343.0	1.4	1.3e-102	342.7	1.0	1.1	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|292657024|ref|YP_003536921.1|	-	3.1e-42	144.1	0.1	5.1e-41	140.1	0.0	2.2	2	0	0	2	2	2	1	DNA	photolyase
DUF4066	PF13278.1	gi|292657025|ref|YP_003536922.1|	-	3.6e-36	123.9	0.3	4.2e-36	123.7	0.2	1.0	1	0	0	1	1	1	1	Putative	amidotransferase
DJ-1_PfpI	PF01965.19	gi|292657025|ref|YP_003536922.1|	-	3.2e-14	52.6	0.2	4.6e-14	52.1	0.2	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.9	gi|292657025|ref|YP_003536922.1|	-	0.001	18.6	0.0	0.0024	17.4	0.0	1.5	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Sod_Fe_C	PF02777.13	gi|292657026|ref|YP_003536923.1|	-	1.6e-36	124.3	0.4	2.9e-36	123.5	0.1	1.5	2	0	0	2	2	2	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|292657026|ref|YP_003536923.1|	-	8.4e-33	112.4	1.3	1.4e-32	111.8	0.9	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
adh_short	PF00106.20	gi|292657029|ref|YP_003536926.1|	-	2.1e-35	122.1	5.3	2.6e-35	121.7	3.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|292657029|ref|YP_003536926.1|	-	1.1e-29	103.8	0.0	1.4e-29	103.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|292657029|ref|YP_003536926.1|	-	4.5e-14	52.5	2.7	6.3e-14	52.0	1.9	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|292657029|ref|YP_003536926.1|	-	8.2e-05	22.1	0.1	0.00021	20.8	0.1	1.7	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.3	gi|292657029|ref|YP_003536926.1|	-	0.01	15.5	0.9	0.025	14.3	0.6	1.6	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
3HCDH_N	PF02737.13	gi|292657029|ref|YP_003536926.1|	-	0.028	14.0	0.9	0.046	13.3	0.6	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF3726	PF12525.3	gi|292657029|ref|YP_003536926.1|	-	0.21	11.4	1.6	0.68	9.7	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3726)
Lactamase_B	PF00753.22	gi|292657030|ref|YP_003536927.1|	-	6.1e-22	78.2	9.2	1e-21	77.5	6.3	1.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|292657030|ref|YP_003536927.1|	-	7.5e-06	25.6	0.7	2.8e-05	23.7	0.5	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|292657030|ref|YP_003536927.1|	-	0.032	13.9	0.1	0.045	13.4	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Thymidylat_synt	PF00303.14	gi|292657031|ref|YP_003536928.1|	-	2.7e-100	334.8	0.0	3.1e-100	334.6	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase
DHFR_1	PF00186.14	gi|292657032|ref|YP_003536929.1|	-	3e-48	163.4	0.0	3.5e-48	163.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
DUF4177	PF13783.1	gi|292657033|ref|YP_003536930.1|	-	1.8e-16	59.5	0.0	2e-16	59.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
Lar_restr_allev	PF14354.1	gi|292657034|ref|YP_003536931.1|	-	0.033	14.4	3.4	0.083	13.2	2.3	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF4633	PF15464.1	gi|292657034|ref|YP_003536931.1|	-	0.16	11.7	1.8	0.3	10.9	0.0	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4633)
DUF1508	PF07411.7	gi|292657035|ref|YP_003536932.1|	-	2.9e-23	81.0	0.2	3.3e-23	80.8	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
Proteasome	PF00227.21	gi|292657036|ref|YP_003536933.1|	-	3.1e-51	173.3	0.0	4.1e-51	172.9	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|292657036|ref|YP_003536933.1|	-	2e-12	46.1	0.9	2.9e-12	45.6	0.1	1.7	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
MOSC	PF03473.12	gi|292657037|ref|YP_003536934.1|	-	2.8e-17	62.4	0.0	4.1e-17	61.8	0.0	1.2	1	0	0	1	1	1	1	MOSC	domain
MOSC_N	PF03476.11	gi|292657037|ref|YP_003536934.1|	-	5.1e-12	45.5	0.0	1.7e-11	43.8	0.0	1.9	2	0	0	2	2	2	1	MOSC	N-terminal	beta	barrel	domain
Amidohydro_1	PF01979.15	gi|292657039|ref|YP_003536936.1|	-	6.5e-33	114.7	3.9	7.2e-33	114.6	2.7	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|292657039|ref|YP_003536936.1|	-	3.2e-16	60.1	13.3	4.4e-14	53.1	9.1	3.1	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|292657039|ref|YP_003536936.1|	-	3.1e-12	46.4	8.0	4e-12	46.0	4.7	1.7	1	1	1	2	2	2	2	Amidohydrolase	family
HTH_10	PF04967.7	gi|292657040|ref|YP_003536937.1|	-	1.2e-12	47.2	0.0	2.1e-12	46.3	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|292657040|ref|YP_003536937.1|	-	0.003	17.2	0.1	0.0062	16.1	0.0	1.6	1	1	0	1	1	1	1	MarR	family
HTH_30	PF13556.1	gi|292657040|ref|YP_003536937.1|	-	0.0031	17.0	0.0	0.0098	15.4	0.0	1.9	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292657040|ref|YP_003536937.1|	-	0.0094	15.7	0.0	0.025	14.3	0.0	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292657040|ref|YP_003536937.1|	-	0.032	13.6	0.0	0.097	12.0	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|292657040|ref|YP_003536937.1|	-	0.049	13.2	0.0	0.12	11.9	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|292657040|ref|YP_003536937.1|	-	0.11	12.7	0.0	0.25	11.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Amidohydro_1	PF01979.15	gi|292657041|ref|YP_003536938.1|	-	2.2e-46	159.0	0.5	2.8e-46	158.7	0.3	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|292657041|ref|YP_003536938.1|	-	1.8e-13	51.1	6.2	1.9e-12	47.7	4.3	2.4	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|292657041|ref|YP_003536938.1|	-	6.1e-11	42.1	2.8	6.3e-11	42.1	0.2	2.2	2	1	0	2	2	2	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|292657041|ref|YP_003536938.1|	-	1e-05	25.2	2.0	1.6e-05	24.6	0.1	2.4	2	0	0	2	2	2	1	Amidohydrolase
A_deaminase	PF00962.17	gi|292657041|ref|YP_003536938.1|	-	0.00067	18.6	0.0	0.0011	18.0	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Acetyltransf_4	PF13420.1	gi|292657042|ref|YP_003536939.1|	-	2.7e-32	111.8	0.0	3.2e-32	111.6	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|292657042|ref|YP_003536939.1|	-	7.2e-14	51.5	0.1	1.1e-13	51.0	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|292657042|ref|YP_003536939.1|	-	1.2e-12	47.9	0.1	4.1e-12	46.2	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|292657042|ref|YP_003536939.1|	-	4.7e-12	46.2	0.0	6.2e-12	45.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|292657042|ref|YP_003536939.1|	-	6.5e-11	42.3	0.0	1.1e-10	41.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|292657042|ref|YP_003536939.1|	-	1e-07	32.0	0.0	1.5e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|292657042|ref|YP_003536939.1|	-	2.8e-07	30.1	0.0	4.4e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|292657042|ref|YP_003536939.1|	-	2.5e-05	24.1	0.1	5.3e-05	23.0	0.1	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|292657042|ref|YP_003536939.1|	-	0.014	15.2	0.0	0.022	14.6	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
MMR_HSR1_C	PF08438.5	gi|292657044|ref|YP_003536941.1|	-	7.8e-31	106.5	0.0	1.3e-30	105.8	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|292657044|ref|YP_003536941.1|	-	5.9e-19	68.1	0.0	7e-18	64.6	0.0	2.4	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|292657044|ref|YP_003536941.1|	-	1.7e-09	37.3	0.0	3.6e-09	36.3	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|292657044|ref|YP_003536941.1|	-	1.9e-05	24.0	0.0	0.00043	19.5	0.0	2.5	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|292657044|ref|YP_003536941.1|	-	0.0068	15.8	0.0	0.016	14.6	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.18	gi|292657044|ref|YP_003536941.1|	-	0.0073	16.1	0.0	0.4	10.4	0.0	2.9	3	0	0	3	3	3	1	Dynamin	family
Miro	PF08477.8	gi|292657044|ref|YP_003536941.1|	-	0.018	15.5	0.0	0.14	12.6	0.0	2.4	2	1	0	2	2	2	0	Miro-like	protein
Ras	PF00071.17	gi|292657044|ref|YP_003536941.1|	-	0.035	13.5	0.1	6	6.2	0.1	2.3	2	0	0	2	2	2	0	Ras	family
Bile_Hydr_Trans	PF04775.9	gi|292657047|ref|YP_003536944.1|	-	0.0015	18.2	0.5	0.71	9.5	0.0	2.6	3	0	0	3	3	3	2	Acyl-CoA	thioester	hydrolase/BAAT	N-terminal	region
DUF1939	PF09154.5	gi|292657047|ref|YP_003536944.1|	-	0.022	14.6	4.0	0.32	10.9	0.2	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1939)
YtkA	PF13115.1	gi|292657047|ref|YP_003536944.1|	-	0.045	14.1	0.9	0.045	14.1	0.6	3.1	1	1	2	3	3	3	0	YtkA-like
TFIIA	PF03153.8	gi|292657047|ref|YP_003536944.1|	-	0.097	12.5	9.9	0.14	12.0	6.8	1.2	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
CobT	PF06213.7	gi|292657047|ref|YP_003536944.1|	-	0.22	10.6	6.4	0.35	9.9	4.5	1.3	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
CarboxypepD_reg	PF13620.1	gi|292657047|ref|YP_003536944.1|	-	0.24	11.4	22.3	0.43	10.6	3.6	2.7	1	1	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
Sigma70_ner	PF04546.8	gi|292657047|ref|YP_003536944.1|	-	0.76	9.3	4.7	1.1	8.8	3.3	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
ECR1_N	PF14382.1	gi|292657047|ref|YP_003536944.1|	-	0.82	9.0	4.6	10	5.4	0.2	2.6	2	0	0	2	2	2	0	Exosome	complex	exonuclease	RRP4	N-terminal	region
NOA36	PF06524.7	gi|292657047|ref|YP_003536944.1|	-	7.9	5.6	11.8	13	4.9	8.2	1.2	1	0	0	1	1	1	0	NOA36	protein
DUF3956	PF13104.1	gi|292657048|ref|YP_003536945.1|	-	0.15	11.6	0.1	0.22	11.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3956)
MC1	PF05854.6	gi|292657049|ref|YP_003536946.1|	-	3.2e-42	142.4	0.3	3.6e-42	142.2	0.2	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
SymE_toxin	PF08845.5	gi|292657050|ref|YP_003536947.1|	-	0.0013	18.5	0.0	0.0014	18.4	0.0	1.2	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
Antitoxin-MazE	PF04014.13	gi|292657050|ref|YP_003536947.1|	-	0.013	15.1	0.1	0.02	14.5	0.1	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
DHO_dh	PF01180.16	gi|292657051|ref|YP_003536948.1|	-	3.6e-82	275.6	0.0	4.2e-82	275.4	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
PcrB	PF01884.12	gi|292657051|ref|YP_003536948.1|	-	0.0011	18.2	0.5	0.025	13.8	0.1	2.2	2	0	0	2	2	2	1	PcrB	family
NMO	PF03060.10	gi|292657051|ref|YP_003536948.1|	-	0.0037	16.4	0.2	0.01	14.9	0.2	1.6	2	0	0	2	2	2	1	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|292657051|ref|YP_003536948.1|	-	0.082	12.1	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
tRNA-synt_1	PF00133.17	gi|292657053|ref|YP_003536950.1|	-	3.8e-132	441.3	0.0	3.7e-131	438.0	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|292657053|ref|YP_003536950.1|	-	3.1e-31	108.2	0.3	6.9e-31	107.0	0.0	1.7	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|292657053|ref|YP_003536950.1|	-	2.3e-25	89.1	1.0	4.3e-12	45.3	0.0	3.8	3	1	1	4	4	4	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|292657053|ref|YP_003536950.1|	-	3.6e-06	26.4	0.0	5.8e-05	22.4	0.0	2.3	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|292657053|ref|YP_003536950.1|	-	5.4e-06	25.7	0.0	0.003	16.7	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|292657053|ref|YP_003536950.1|	-	0.00061	18.5	0.0	0.0062	15.2	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
TF_Zn_Ribbon	PF08271.7	gi|292657053|ref|YP_003536950.1|	-	0.46	9.8	3.5	3.4	7.0	0.0	3.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
UPF0547	PF10571.4	gi|292657053|ref|YP_003536950.1|	-	1	9.1	7.3	2.6	7.8	1.4	2.8	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|292657053|ref|YP_003536950.1|	-	8.4	6.4	8.5	21	5.1	2.6	3.1	3	1	0	3	3	3	0	Zinc	ribbon	domain
Cys_Met_Meta_PP	PF01053.15	gi|292657054|ref|YP_003536951.1|	-	5e-141	469.4	0.0	5.6e-141	469.2	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|292657054|ref|YP_003536951.1|	-	4.2e-11	42.4	3.4	7.3e-10	38.4	0.6	2.8	2	1	1	3	3	3	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|292657054|ref|YP_003536951.1|	-	1.7e-06	27.0	0.1	2.3e-06	26.6	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.6	gi|292657054|ref|YP_003536951.1|	-	6.5e-06	24.6	0.0	4.9e-05	21.8	0.0	1.9	1	1	0	1	1	1	1	Methionine	gamma-lyase
Beta_elim_lyase	PF01212.16	gi|292657054|ref|YP_003536951.1|	-	6.7e-06	25.4	0.2	1.6e-05	24.1	0.1	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|292657054|ref|YP_003536951.1|	-	6.8e-05	21.9	0.0	8.8e-05	21.6	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
B5	PF03484.10	gi|292657055|ref|YP_003536952.1|	-	3.7e-17	61.9	0.1	2.8e-15	55.8	0.1	2.6	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|292657055|ref|YP_003536952.1|	-	1.7e-11	43.8	0.0	2.7e-11	43.2	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.15	gi|292657055|ref|YP_003536952.1|	-	0.00092	18.4	0.0	0.0023	17.1	0.0	1.6	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
Phage_int_SAM_1	PF02899.12	gi|292657055|ref|YP_003536952.1|	-	0.16	12.1	0.2	0.34	11.1	0.1	1.5	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
tRNA-synt_2d	PF01409.15	gi|292657056|ref|YP_003536953.1|	-	7.8e-79	264.3	0.0	9.7e-79	264.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|292657056|ref|YP_003536953.1|	-	7.3e-06	24.9	0.8	0.0036	16.1	0.1	2.7	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_27	PF13463.1	gi|292657056|ref|YP_003536953.1|	-	0.00012	22.2	1.3	0.004	17.4	0.1	2.5	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|292657056|ref|YP_003536953.1|	-	0.0083	15.7	0.6	0.035	13.7	0.1	2.2	2	0	0	2	2	2	1	MarR	family
tRNA-synt_2b	PF00587.20	gi|292657056|ref|YP_003536953.1|	-	0.017	14.7	0.0	0.032	13.8	0.0	1.5	1	0	0	1	1	1	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Fe_dep_repress	PF01325.14	gi|292657056|ref|YP_003536953.1|	-	0.067	13.1	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.17	gi|292657056|ref|YP_003536953.1|	-	0.15	11.7	0.0	7	6.4	0.0	2.3	2	0	0	2	2	2	0	MarR	family
DAO	PF01266.19	gi|292657057|ref|YP_003536954.1|	-	2e-60	204.6	10.3	7.4e-39	133.6	2.1	2.0	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|292657057|ref|YP_003536954.1|	-	7.5e-07	29.0	2.7	2e-06	27.7	1.9	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|292657057|ref|YP_003536954.1|	-	9e-06	24.7	7.3	1.7e-05	23.8	5.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|292657057|ref|YP_003536954.1|	-	1.1e-05	25.7	3.1	2.9e-05	24.3	2.1	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|292657057|ref|YP_003536954.1|	-	0.00035	20.5	2.5	0.00055	19.8	1.8	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|292657057|ref|YP_003536954.1|	-	0.00051	19.2	1.8	0.00061	18.9	1.3	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|292657057|ref|YP_003536954.1|	-	0.0013	17.8	0.5	0.0018	17.4	0.3	1.2	1	0	0	1	1	1	1	Thi4	family
NAD_binding_7	PF13241.1	gi|292657057|ref|YP_003536954.1|	-	0.011	15.9	1.0	0.022	15.0	0.7	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|292657057|ref|YP_003536954.1|	-	0.02	14.9	0.2	0.03	14.3	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|292657057|ref|YP_003536954.1|	-	0.021	13.3	2.7	0.031	12.7	1.8	1.2	1	0	0	1	1	1	0	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|292657057|ref|YP_003536954.1|	-	0.058	12.4	6.0	0.086	11.8	4.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
3HCDH_N	PF02737.13	gi|292657057|ref|YP_003536954.1|	-	0.18	11.4	3.0	0.35	10.5	2.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292657057|ref|YP_003536954.1|	-	0.27	10.6	3.1	0.5	9.7	2.2	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AdoHcyase_NAD	PF00670.16	gi|292657057|ref|YP_003536954.1|	-	0.34	10.7	1.7	0.64	9.8	1.2	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292657057|ref|YP_003536954.1|	-	0.4	10.2	2.8	0.69	9.4	1.9	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.9	gi|292657057|ref|YP_003536954.1|	-	0.54	8.8	2.9	0.82	8.2	2.0	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
ApbA	PF02558.11	gi|292657057|ref|YP_003536954.1|	-	0.94	8.9	2.7	3	7.2	2.1	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.17	gi|292657057|ref|YP_003536954.1|	-	3.7	6.2	5.7	4.9	5.8	4.0	1.1	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
OCD_Mu_crystall	PF02423.10	gi|292657058|ref|YP_003536955.1|	-	5.1e-63	212.7	1.8	4.1e-59	199.9	1.0	2.0	1	1	1	2	2	2	2	Ornithine	cyclodeaminase/mu-crystallin	family
tRNA-synt_1b	PF00579.20	gi|292657059|ref|YP_003536956.1|	-	3.3e-39	134.7	0.0	7.9e-23	80.9	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
Nitro_FeMo-Co	PF02579.12	gi|292657059|ref|YP_003536956.1|	-	0.045	13.8	0.1	0.12	12.4	0.0	1.8	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
AA_permease_N	PF08403.5	gi|292657059|ref|YP_003536956.1|	-	0.061	12.6	0.0	0.17	11.2	0.0	1.6	1	0	0	1	1	1	0	Amino	acid	permease	N-terminal
tRNA_int_endo	PF01974.12	gi|292657060|ref|YP_003536957.1|	-	4.4e-39	132.1	0.0	1.8e-25	88.5	0.0	2.6	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|292657060|ref|YP_003536957.1|	-	8.8e-29	98.8	0.0	9.7e-15	53.8	0.0	2.5	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
Auto_anti-p27	PF06677.7	gi|292657061|ref|YP_003536958.1|	-	1e-08	34.8	4.1	5.5e-06	26.0	0.0	3.9	4	1	1	5	5	5	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.14	gi|292657061|ref|YP_003536958.1|	-	3.1e-08	32.9	0.6	1.9e-06	27.2	0.1	2.4	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
DUF91	PF01939.11	gi|292657061|ref|YP_003536958.1|	-	3.3e-07	29.7	0.0	4.2e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
zf-Mss51	PF13824.1	gi|292657061|ref|YP_003536958.1|	-	0.014	15.2	1.6	8	6.4	0.1	3.6	4	0	0	4	4	4	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
GFA	PF04828.9	gi|292657061|ref|YP_003536958.1|	-	0.037	13.9	0.1	8	6.4	0.0	2.5	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Nudix_N_2	PF14803.1	gi|292657061|ref|YP_003536958.1|	-	0.056	13.1	0.6	14	5.4	0.1	2.7	2	0	0	2	2	2	0	Nudix	N-terminal
ADK_lid	PF05191.9	gi|292657061|ref|YP_003536958.1|	-	3.8	7.2	8.3	4.7	6.9	0.0	3.2	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
HAD_2	PF13419.1	gi|292657062|ref|YP_003536959.1|	-	1.7e-26	93.5	0.4	2.1e-26	93.2	0.3	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292657062|ref|YP_003536959.1|	-	1e-15	58.7	0.1	1.3e-14	55.1	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|292657062|ref|YP_003536959.1|	-	4.6e-12	45.4	0.1	8.6e-12	44.5	0.1	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|292657062|ref|YP_003536959.1|	-	5.7e-07	29.8	0.1	6.6e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|292657062|ref|YP_003536959.1|	-	0.0015	18.4	0.1	0.023	14.5	0.1	2.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
CIDE-N	PF02017.10	gi|292657062|ref|YP_003536959.1|	-	0.0086	15.8	0.8	15	5.4	0.0	3.1	3	0	0	3	3	3	1	CIDE-N	domain
NT5C	PF06941.7	gi|292657062|ref|YP_003536959.1|	-	0.066	12.7	0.2	0.12	11.8	0.1	1.5	1	1	0	1	1	1	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
DEAD	PF00270.24	gi|292657063|ref|YP_003536960.1|	-	3.7e-28	98.1	0.0	4.5e-27	94.6	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Sec63	PF02889.11	gi|292657063|ref|YP_003536960.1|	-	4.2e-23	82.0	0.0	5.7e-23	81.6	0.0	1.1	1	0	0	1	1	1	1	Sec63	Brl	domain
Helicase_C	PF00271.26	gi|292657063|ref|YP_003536960.1|	-	2.9e-10	39.8	0.0	9.1e-10	38.2	0.0	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.1	gi|292657063|ref|YP_003536960.1|	-	1.7e-08	34.4	0.7	1.7e-08	34.4	0.5	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
ResIII	PF04851.10	gi|292657063|ref|YP_003536960.1|	-	1.6e-07	31.3	0.0	3e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.4	gi|292657063|ref|YP_003536960.1|	-	0.0046	16.4	0.0	0.017	14.6	0.0	2.0	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
SNF2_N	PF00176.18	gi|292657063|ref|YP_003536960.1|	-	0.014	14.2	0.0	0.022	13.5	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
TrmB	PF01978.14	gi|292657063|ref|YP_003536960.1|	-	0.045	13.4	0.0	0.24	11.1	0.0	2.2	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Radical_SAM	PF04055.16	gi|292657065|ref|YP_003536962.1|	-	1.5e-13	51.2	0.0	2.4e-13	50.6	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF2090	PF09863.4	gi|292657065|ref|YP_003536962.1|	-	0.13	11.0	0.0	13	4.5	0.0	2.8	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2090)
E1_dh	PF00676.15	gi|292657066|ref|YP_003536963.1|	-	1.6e-88	296.3	0.0	1.8e-88	296.1	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|292657066|ref|YP_003536963.1|	-	4.5e-07	29.0	0.0	6.3e-07	28.5	0.0	1.1	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.16	gi|292657066|ref|YP_003536963.1|	-	1.2e-06	27.6	0.0	2.9e-06	26.3	0.0	1.5	1	1	1	2	2	2	1	Transketolase,	thiamine	diphosphate	binding	domain
TPP_enzyme_C	PF02775.16	gi|292657066|ref|YP_003536963.1|	-	0.0006	19.4	0.0	0.0034	16.9	0.0	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
HTH_41	PF14502.1	gi|292657066|ref|YP_003536963.1|	-	0.1	12.2	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
BPL_C	PF02237.12	gi|292657066|ref|YP_003536963.1|	-	0.12	12.0	2.2	0.18	11.5	0.6	2.0	2	0	0	2	2	2	0	Biotin	protein	ligase	C	terminal	domain
Transket_pyr	PF02779.19	gi|292657067|ref|YP_003536964.1|	-	5e-46	156.4	0.0	6.6e-46	156.0	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|292657067|ref|YP_003536964.1|	-	4.3e-40	136.5	0.2	1.4e-39	134.8	0.1	1.8	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
2-oxoacid_dh	PF00198.18	gi|292657068|ref|YP_003536965.1|	-	2.9e-92	308.1	0.0	3.7e-92	307.7	0.0	1.1	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.17	gi|292657068|ref|YP_003536965.1|	-	2.2e-24	84.8	1.8	5e-24	83.7	1.3	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.12	gi|292657068|ref|YP_003536965.1|	-	4.7e-22	77.3	5.4	3.9e-16	58.3	0.7	2.6	2	0	0	2	2	2	2	e3	binding	domain
Biotin_lipoyl_2	PF13533.1	gi|292657068|ref|YP_003536965.1|	-	2.9e-07	30.0	11.2	1.5e-05	24.5	0.4	3.0	2	1	1	3	3	3	2	Biotin-lipoyl	like
HlyD_2	PF12700.2	gi|292657068|ref|YP_003536965.1|	-	7.5e-07	28.6	0.2	0.00012	21.3	0.1	2.6	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|292657068|ref|YP_003536965.1|	-	6.7e-05	23.1	2.3	0.00039	20.7	0.1	2.9	2	1	1	3	3	3	1	HlyD	family	secretion	protein
GCV_H	PF01597.14	gi|292657068|ref|YP_003536965.1|	-	0.0009	18.9	0.2	0.0026	17.4	0.1	1.8	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.1	gi|292657068|ref|YP_003536965.1|	-	0.032	13.9	0.1	0.07	12.8	0.1	1.6	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
Pyr_redox_2	PF07992.9	gi|292657069|ref|YP_003536966.1|	-	2.3e-42	145.1	10.4	6.3e-41	140.4	7.2	3.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|292657069|ref|YP_003536966.1|	-	1.5e-38	131.1	1.0	4.4e-38	129.6	0.7	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|292657069|ref|YP_003536966.1|	-	1.2e-22	80.0	7.1	1.5e-21	76.5	0.4	3.1	4	0	0	4	4	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|292657069|ref|YP_003536966.1|	-	2.1e-11	44.2	2.3	2e-07	31.2	1.0	3.1	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|292657069|ref|YP_003536966.1|	-	4.8e-11	42.1	12.5	0.0032	16.4	0.2	4.4	5	0	0	5	5	5	3	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|292657069|ref|YP_003536966.1|	-	3.2e-10	39.4	6.0	3.7e-07	29.3	2.5	2.7	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|292657069|ref|YP_003536966.1|	-	1.7e-08	33.7	6.1	5.1e-06	25.6	0.3	3.5	3	1	1	4	4	4	2	FAD	binding	domain
HI0933_like	PF03486.9	gi|292657069|ref|YP_003536966.1|	-	1.8e-08	33.2	5.5	0.0011	17.5	0.1	3.6	4	0	0	4	4	4	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|292657069|ref|YP_003536966.1|	-	2e-07	30.9	1.7	0.00066	19.6	0.2	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|292657069|ref|YP_003536966.1|	-	2.6e-07	30.0	3.7	6.5e-07	28.7	0.7	2.3	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|292657069|ref|YP_003536966.1|	-	1.5e-06	27.5	9.3	0.0038	16.3	0.2	3.2	2	1	1	3	3	3	3	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|292657069|ref|YP_003536966.1|	-	2.9e-05	23.5	1.4	0.00035	20.0	0.1	2.6	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|292657069|ref|YP_003536966.1|	-	3.6e-05	23.9	0.2	0.0087	16.3	0.0	2.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|292657069|ref|YP_003536966.1|	-	0.00084	19.0	4.9	0.016	14.8	0.1	2.6	3	0	0	3	3	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|292657069|ref|YP_003536966.1|	-	0.0032	17.0	1.9	0.01	15.4	0.0	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.1	gi|292657069|ref|YP_003536966.1|	-	0.0075	15.2	0.0	3.4	6.4	0.0	2.2	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
TrkA_N	PF02254.13	gi|292657069|ref|YP_003536966.1|	-	0.0089	16.0	0.5	0.44	10.5	0.0	2.9	2	0	0	2	2	2	1	TrkA-N	domain
CPSase_L_chain	PF00289.17	gi|292657069|ref|YP_003536966.1|	-	0.0094	16.0	0.2	35	4.5	0.0	3.8	3	0	0	3	3	3	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
XdhC_C	PF13478.1	gi|292657069|ref|YP_003536966.1|	-	0.016	15.5	0.3	0.27	11.5	0.0	2.8	3	1	0	3	3	3	0	XdhC	Rossmann	domain
Thi4	PF01946.12	gi|292657069|ref|YP_003536966.1|	-	0.019	14.0	5.3	0.17	10.9	0.1	3.2	3	1	1	4	4	4	0	Thi4	family
NAD_binding_9	PF13454.1	gi|292657069|ref|YP_003536966.1|	-	0.019	14.7	3.8	1.4	8.6	0.0	3.3	4	0	0	4	4	3	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|292657069|ref|YP_003536966.1|	-	0.095	11.6	0.9	6.3	5.5	0.0	2.3	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|292657069|ref|YP_003536966.1|	-	1.3	7.6	6.4	1.5	7.3	0.1	2.9	2	1	0	3	3	3	0	Tryptophan	halogenase
HTH_3	PF01381.17	gi|292657070|ref|YP_003536967.1|	-	3.5e-17	61.9	0.0	3.9e-17	61.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|292657070|ref|YP_003536967.1|	-	5.8e-12	45.4	0.0	6.8e-12	45.2	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|292657070|ref|YP_003536967.1|	-	3.5e-11	43.1	0.3	3.9e-11	42.9	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|292657070|ref|YP_003536967.1|	-	7.7e-07	29.2	0.0	9.4e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_25	PF13413.1	gi|292657070|ref|YP_003536967.1|	-	1.7e-05	24.3	0.2	2.1e-05	24.0	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292657070|ref|YP_003536967.1|	-	0.00081	18.7	0.0	0.0012	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|292657070|ref|YP_003536967.1|	-	0.0044	16.3	0.4	0.0065	15.7	0.3	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.1	gi|292657070|ref|YP_003536967.1|	-	0.0057	16.4	0.1	0.0081	15.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|292657070|ref|YP_003536967.1|	-	0.0069	16.0	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|292657070|ref|YP_003536967.1|	-	0.012	15.1	0.3	0.018	14.5	0.2	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|292657070|ref|YP_003536967.1|	-	0.014	14.9	0.1	0.022	14.3	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_37	PF13744.1	gi|292657070|ref|YP_003536967.1|	-	0.017	14.9	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|292657070|ref|YP_003536967.1|	-	0.022	14.4	0.0	0.031	13.9	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
Crp	PF00325.15	gi|292657070|ref|YP_003536967.1|	-	0.038	13.4	0.1	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
DUF1323	PF07037.6	gi|292657070|ref|YP_003536967.1|	-	0.049	13.8	0.0	0.064	13.4	0.0	1.1	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
MerR	PF00376.18	gi|292657070|ref|YP_003536967.1|	-	0.09	12.3	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HHH_5	PF14520.1	gi|292657070|ref|YP_003536967.1|	-	0.14	12.3	0.5	0.37	10.9	0.0	1.7	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
DUF4231	PF14015.1	gi|292657071|ref|YP_003536968.1|	-	0.0017	18.3	2.0	0.037	14.0	0.1	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4231)
TauE	PF01925.14	gi|292657071|ref|YP_003536968.1|	-	0.0096	15.3	9.4	0.022	14.1	6.5	1.6	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF2178	PF09946.4	gi|292657071|ref|YP_003536968.1|	-	0.028	14.1	0.0	0.034	13.9	0.0	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2178)
DUF4282	PF14110.1	gi|292657071|ref|YP_003536968.1|	-	0.26	11.4	2.6	1.7	8.8	1.8	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
DUF2244	PF10003.4	gi|292657071|ref|YP_003536968.1|	-	0.47	9.8	3.6	0.44	9.9	0.5	2.1	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
DUF3040	PF11239.3	gi|292657072|ref|YP_003536969.1|	-	2.1	8.4	4.9	3.4	7.7	3.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
HAD	PF12710.2	gi|292657073|ref|YP_003536970.1|	-	6e-21	75.4	0.1	7.2e-21	75.2	0.1	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|292657073|ref|YP_003536970.1|	-	3.8e-15	56.8	0.1	3.2e-10	40.7	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|292657073|ref|YP_003536970.1|	-	2e-13	50.5	0.1	3.5e-09	36.6	0.0	3.0	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|292657073|ref|YP_003536970.1|	-	5.2e-10	39.8	0.2	1.9e-08	34.7	0.0	2.4	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|292657073|ref|YP_003536970.1|	-	0.00053	19.2	0.0	0.033	13.3	0.0	2.1	2	0	0	2	2	2	1	Putative	Phosphatase
Glyco_trans_4_4	PF13579.1	gi|292657073|ref|YP_003536970.1|	-	0.023	14.8	0.1	0.061	13.4	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
UMPH-1	PF05822.7	gi|292657073|ref|YP_003536970.1|	-	0.035	13.4	0.0	0.046	13.0	0.0	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
S6PP	PF05116.8	gi|292657073|ref|YP_003536970.1|	-	0.071	12.3	0.0	0.16	11.1	0.0	1.7	2	0	0	2	2	2	0	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase_6	PF13344.1	gi|292657073|ref|YP_003536970.1|	-	0.094	12.6	0.0	0.7	9.8	0.0	2.4	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF835	PF05763.7	gi|292657075|ref|YP_003536972.1|	-	0.0018	17.8	0.0	0.0032	17.0	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
2-Hacid_dh_C	PF02826.14	gi|292657076|ref|YP_003536973.1|	-	4.6e-57	192.0	0.0	8.2e-57	191.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|292657076|ref|YP_003536973.1|	-	1.4e-36	124.9	0.5	3.5e-36	123.5	0.5	1.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.20	gi|292657076|ref|YP_003536973.1|	-	0.0041	16.5	0.4	0.033	13.6	0.0	2.7	2	0	0	2	2	2	1	ACT	domain
ELFV_dehydrog	PF00208.16	gi|292657076|ref|YP_003536973.1|	-	0.0091	15.6	0.1	0.031	13.8	0.1	1.9	1	1	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_2	PF03446.10	gi|292657076|ref|YP_003536973.1|	-	0.012	15.5	0.1	0.11	12.2	0.0	2.7	3	1	1	4	4	4	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|292657076|ref|YP_003536973.1|	-	0.015	15.2	1.5	0.091	12.7	0.0	3.0	3	0	0	3	3	3	0	TrkA-N	domain
PALP	PF00291.20	gi|292657077|ref|YP_003536974.1|	-	2.3e-64	217.5	2.2	2.6e-64	217.3	1.5	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
C1_2	PF03107.11	gi|292657077|ref|YP_003536974.1|	-	0.0088	16.1	1.1	0.016	15.3	0.8	1.4	1	0	0	1	1	1	1	C1	domain
DUF4621	PF15414.1	gi|292657077|ref|YP_003536974.1|	-	0.14	10.7	0.0	0.25	9.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4621)
TrmB	PF01978.14	gi|292657078|ref|YP_003536975.1|	-	1.9e-14	53.0	0.0	2.5e-14	52.7	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|292657078|ref|YP_003536975.1|	-	9e-08	31.6	0.1	1.2e-07	31.2	0.1	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|292657078|ref|YP_003536975.1|	-	6e-06	25.8	0.1	9e-06	25.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|292657078|ref|YP_003536975.1|	-	6.2e-05	23.2	0.1	9e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|292657078|ref|YP_003536975.1|	-	8.1e-05	21.9	0.1	0.00012	21.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Phage_rep_org_N	PF09681.5	gi|292657078|ref|YP_003536975.1|	-	0.00043	19.8	0.0	0.0075	15.8	0.0	2.1	1	1	1	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_IclR	PF09339.5	gi|292657078|ref|YP_003536975.1|	-	0.00045	19.7	0.1	0.00088	18.8	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|292657078|ref|YP_003536975.1|	-	0.0005	19.8	0.2	0.00084	19.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR-DNA-bind	PF09278.6	gi|292657078|ref|YP_003536975.1|	-	0.012	16.0	0.0	2	8.8	0.0	2.2	2	0	0	2	2	2	0	MerR,	DNA	binding
HTH_5	PF01022.15	gi|292657078|ref|YP_003536975.1|	-	0.017	14.7	0.0	0.028	14.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.16	gi|292657078|ref|YP_003536975.1|	-	0.091	12.2	0.1	0.16	11.4	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF296	PF03479.10	gi|292657079|ref|YP_003536976.1|	-	0.045	13.3	0.0	0.066	12.8	0.0	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF296)
hemP	PF10636.4	gi|292657079|ref|YP_003536976.1|	-	0.12	12.0	0.2	0.27	10.8	0.1	1.7	2	1	0	2	2	2	0	Hemin	uptake	protein	hemP
Tox-REase-2	PF15646.1	gi|292657080|ref|YP_003536977.1|	-	0.27	11.1	3.4	0.14	12.0	0.5	1.9	2	1	0	2	2	2	0	Restriction	endonuclease	fold	toxin	2
Cupin_2	PF07883.6	gi|292657082|ref|YP_003536979.1|	-	2.2e-12	46.3	0.1	2.9e-12	45.8	0.1	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.7	gi|292657082|ref|YP_003536979.1|	-	0.015	14.6	0.0	0.021	14.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
MannoseP_isomer	PF01050.13	gi|292657082|ref|YP_003536979.1|	-	0.08	12.5	0.0	0.096	12.3	0.0	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.14	gi|292657082|ref|YP_003536979.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
CstA	PF02554.9	gi|292657084|ref|YP_003536981.1|	-	5e-129	430.2	21.3	5e-129	430.2	14.7	1.9	2	1	0	2	2	2	1	Carbon	starvation	protein	CstA
DUF4161	PF13722.1	gi|292657084|ref|YP_003536981.1|	-	2.3e-31	108.7	1.6	2.3e-31	108.7	1.1	3.9	5	0	0	5	5	5	1	C-terminal	domain	on	CstA	(DUF4161)
Pox_P21	PF05313.7	gi|292657084|ref|YP_003536981.1|	-	0.1	11.8	8.2	0.13	11.5	2.9	2.5	3	0	0	3	3	3	0	Poxvirus	P21	membrane	protein
ArsA_ATPase	PF02374.10	gi|292657085|ref|YP_003536982.1|	-	9.7e-76	254.7	0.0	1.2e-75	254.4	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|292657085|ref|YP_003536982.1|	-	5.6e-14	52.0	0.0	8.6e-14	51.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|292657085|ref|YP_003536982.1|	-	9.2e-08	32.1	0.0	1.1e-06	28.6	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|292657085|ref|YP_003536982.1|	-	0.0024	17.3	0.0	0.0032	16.9	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
AAA_25	PF13481.1	gi|292657085|ref|YP_003536982.1|	-	0.0045	16.4	0.5	0.014	14.7	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.13	gi|292657085|ref|YP_003536982.1|	-	0.0053	15.9	0.0	0.0082	15.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
KaiC	PF06745.8	gi|292657085|ref|YP_003536982.1|	-	0.0069	15.5	0.1	0.012	14.7	0.1	1.4	1	1	0	1	1	1	1	KaiC
PhoH	PF02562.11	gi|292657085|ref|YP_003536982.1|	-	0.034	13.3	0.0	0.05	12.8	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.12	gi|292657085|ref|YP_003536982.1|	-	0.039	13.3	0.1	0.088	12.2	0.1	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
SRP54	PF00448.17	gi|292657085|ref|YP_003536982.1|	-	0.059	12.8	0.3	0.14	11.6	0.1	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Cbl_N	PF02262.11	gi|292657085|ref|YP_003536982.1|	-	0.12	12.1	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	CBL	proto-oncogene	N-terminal	domain	1
Cytochrom_B559a	PF00284.15	gi|292657086|ref|YP_003536983.1|	-	0.017	14.6	0.1	0.034	13.6	0.1	1.5	1	0	0	1	1	1	0	Lumenal	portion	of	Cytochrome	b559,	alpha	(gene	psbE)	subunit
cobW	PF02492.14	gi|292657087|ref|YP_003536984.1|	-	1.3e-43	148.4	0.0	1.7e-43	148.1	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|292657087|ref|YP_003536984.1|	-	8.8e-22	76.6	0.0	1.7e-21	75.7	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
Zeta_toxin	PF06414.7	gi|292657087|ref|YP_003536984.1|	-	0.00043	19.4	1.3	0.0059	15.7	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
UPF0079	PF02367.12	gi|292657087|ref|YP_003536984.1|	-	0.014	14.9	0.2	0.033	13.8	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
MobB	PF03205.9	gi|292657087|ref|YP_003536984.1|	-	0.021	14.5	0.1	0.46	10.1	0.0	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.4	gi|292657087|ref|YP_003536984.1|	-	0.026	13.1	0.0	0.041	12.5	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Arch_ATPase	PF01637.13	gi|292657087|ref|YP_003536984.1|	-	0.038	13.6	0.0	0.052	13.2	0.0	1.1	1	0	0	1	1	1	0	Archaeal	ATPase
DUF258	PF03193.11	gi|292657087|ref|YP_003536984.1|	-	0.048	12.8	0.0	0.072	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
CbiA	PF01656.18	gi|292657087|ref|YP_003536984.1|	-	0.053	12.9	0.2	0.087	12.2	0.1	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GTP_EFTU	PF00009.22	gi|292657087|ref|YP_003536984.1|	-	0.063	12.7	0.0	0.81	9.0	0.0	2.1	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_10	PF12846.2	gi|292657087|ref|YP_003536984.1|	-	0.081	12.3	0.1	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
Vma12	PF11712.3	gi|292657088|ref|YP_003536985.1|	-	0.082	12.6	0.1	0.085	12.5	0.1	1.1	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
UPRTase	PF14681.1	gi|292657089|ref|YP_003536986.1|	-	2.3e-57	193.5	0.0	2.7e-57	193.3	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|292657089|ref|YP_003536986.1|	-	1.8e-07	30.9	0.1	2.8e-07	30.3	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
DZR	PF12773.2	gi|292657090|ref|YP_003536987.1|	-	0.06	13.1	0.4	0.14	11.9	0.3	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
UPF0029	PF01205.14	gi|292657091|ref|YP_003536988.1|	-	4.1e-33	113.3	0.0	5.5e-33	112.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.6	gi|292657091|ref|YP_003536988.1|	-	5.1e-10	38.7	0.4	1.2e-09	37.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.19	gi|292657091|ref|YP_003536988.1|	-	0.0026	17.5	0.0	0.0055	16.5	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
ACT_7	PF13840.1	gi|292657092|ref|YP_003536989.1|	-	2e-06	27.1	0.1	5.2e-06	25.9	0.0	1.6	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|292657092|ref|YP_003536989.1|	-	5.3e-05	22.6	0.9	0.0002	20.7	0.1	2.4	2	1	0	2	2	2	1	ACT	domain
CM_2	PF01817.16	gi|292657092|ref|YP_003536989.1|	-	0.0021	18.0	0.0	0.0039	17.2	0.0	1.4	1	0	0	1	1	1	1	Chorismate	mutase	type	II
ACT_4	PF13291.1	gi|292657092|ref|YP_003536989.1|	-	0.034	14.4	0.1	0.78	10.1	0.0	2.3	2	0	0	2	2	2	0	ACT	domain
Lar_restr_allev	PF14354.1	gi|292657093|ref|YP_003536990.1|	-	0.0067	16.7	1.4	0.0084	16.3	0.1	1.9	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|292657093|ref|YP_003536990.1|	-	0.12	12.2	0.1	0.22	11.3	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
BUD22	PF09073.5	gi|292657093|ref|YP_003536990.1|	-	0.28	10.1	3.1	0.32	10.0	2.2	1.1	1	0	0	1	1	1	0	BUD22
Trypan_PARP	PF05887.6	gi|292657093|ref|YP_003536990.1|	-	2.3	8.0	18.9	3.9	7.2	13.1	1.4	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
IGPD	PF00475.13	gi|292657094|ref|YP_003536991.1|	-	3.5e-62	208.5	2.3	4.6e-62	208.1	1.6	1.1	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
CBM_15	PF03426.9	gi|292657094|ref|YP_003536991.1|	-	0.15	11.4	0.4	0.42	9.9	0.0	1.9	2	0	0	2	2	2	0	Carbohydrate	binding	domain	(family	15)
His_biosynth	PF00977.16	gi|292657096|ref|YP_003536993.1|	-	6.9e-76	254.5	2.6	7.7e-76	254.3	1.8	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|292657096|ref|YP_003536993.1|	-	3.2e-10	39.3	0.1	4.9e-06	25.5	0.0	2.2	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|292657096|ref|YP_003536993.1|	-	2.9e-09	36.5	3.7	0.00011	21.5	0.0	3.0	2	1	1	3	3	3	2	PcrB	family
DHO_dh	PF01180.16	gi|292657096|ref|YP_003536993.1|	-	1.7e-08	33.8	0.2	2.1e-05	23.6	0.1	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
ThiG	PF05690.9	gi|292657096|ref|YP_003536993.1|	-	1.8e-08	33.7	5.1	0.00013	21.1	0.1	2.1	1	1	1	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.16	gi|292657096|ref|YP_003536993.1|	-	1.1e-07	31.1	1.2	0.00035	19.7	0.1	3.5	2	2	2	4	4	4	2	Indole-3-glycerol	phosphate	synthase
NMO	PF03060.10	gi|292657096|ref|YP_003536993.1|	-	4.8e-07	29.2	8.3	6.4e-06	25.5	1.4	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
TMP-TENI	PF02581.12	gi|292657096|ref|YP_003536993.1|	-	4.6e-05	22.6	0.7	0.0038	16.3	0.2	2.2	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase/TENI
Trp_syntA	PF00290.15	gi|292657096|ref|YP_003536993.1|	-	0.00043	18.8	0.1	0.028	12.9	0.0	2.2	2	0	0	2	2	2	1	Tryptophan	synthase	alpha	chain
NanE	PF04131.9	gi|292657096|ref|YP_003536993.1|	-	0.012	14.5	0.4	2.6	6.9	0.0	2.4	2	0	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
Ribul_P_3_epim	PF00834.14	gi|292657096|ref|YP_003536993.1|	-	0.031	13.4	1.4	0.77	8.8	0.1	2.3	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
IMPDH	PF00478.20	gi|292657096|ref|YP_003536993.1|	-	0.078	11.8	1.6	1.2	7.9	0.1	2.1	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
G3P_antiterm	PF04309.7	gi|292657096|ref|YP_003536993.1|	-	0.087	11.8	0.4	0.48	9.4	0.1	1.9	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
B12-binding	PF02310.14	gi|292657096|ref|YP_003536993.1|	-	0.15	11.9	5.6	5.2	6.9	0.8	2.9	1	1	1	3	3	3	0	B12	binding	domain
FMN_dh	PF01070.13	gi|292657096|ref|YP_003536993.1|	-	0.15	10.9	10.4	0.62	8.8	1.0	2.2	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
PGM_PMM_I	PF02878.11	gi|292657097|ref|YP_003536994.1|	-	6.5e-35	119.6	0.0	1.1e-34	118.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|292657097|ref|YP_003536994.1|	-	1.5e-27	95.9	0.2	3.2e-27	94.8	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|292657097|ref|YP_003536994.1|	-	4.1e-17	61.9	0.3	2e-16	59.7	0.1	2.2	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.11	gi|292657097|ref|YP_003536994.1|	-	3.9e-12	46.2	0.0	1.3e-11	44.5	0.0	1.8	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
DUF3800	PF12686.2	gi|292657098|ref|YP_003536995.1|	-	8.4e-05	22.3	0.1	0.0013	18.3	0.1	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3800)
PRA-CH	PF01502.13	gi|292657100|ref|YP_003536997.1|	-	7e-36	121.7	0.2	1.1e-35	121.0	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Arc_PepC_II	PF06847.6	gi|292657101|ref|YP_003536998.1|	-	1.6e-15	57.3	0.0	5.8e-15	55.5	0.0	1.8	2	0	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.13	gi|292657101|ref|YP_003536998.1|	-	1.6e-09	37.8	7.3	1.6e-09	37.8	5.0	2.1	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
HupE_UreJ	PF04955.7	gi|292657102|ref|YP_003536999.1|	-	0.069	12.4	0.2	0.069	12.4	0.1	2.2	2	1	0	2	2	2	0	HupE	/	UreJ	protein
HPP	PF04982.8	gi|292657102|ref|YP_003536999.1|	-	0.47	10.3	5.7	2.1	8.2	3.9	2.2	1	1	0	1	1	1	0	HPP	family
ABC2_membrane	PF01061.19	gi|292657102|ref|YP_003536999.1|	-	1.2	8.2	8.1	3.1	6.9	5.6	1.7	1	1	0	1	1	1	0	ABC-2	type	transporter
DUF4131	PF13567.1	gi|292657102|ref|YP_003536999.1|	-	3.2	7.1	13.4	7	6.0	2.0	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Fer2	PF00111.22	gi|292657103|ref|YP_003537000.1|	-	1.7e-14	53.3	0.4	2.7e-14	52.6	0.3	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|292657103|ref|YP_003537000.1|	-	0.047	13.5	0.2	0.096	12.5	0.1	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
PHO4	PF01384.15	gi|292657104|ref|YP_003537001.1|	-	1.4e-68	230.9	19.2	1.9e-68	230.5	13.3	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
Cys_Met_Meta_PP	PF01053.15	gi|292657105|ref|YP_003537002.1|	-	9.9e-136	452.0	0.0	1.1e-135	451.8	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|292657105|ref|YP_003537002.1|	-	4.5e-10	39.0	0.0	7.5e-10	38.2	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|292657105|ref|YP_003537002.1|	-	5.2e-07	29.0	0.8	1e-06	28.0	0.6	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|292657105|ref|YP_003537002.1|	-	7.6e-05	21.6	0.4	0.00016	20.5	0.0	1.6	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|292657105|ref|YP_003537002.1|	-	0.00027	20.1	0.1	0.00065	18.9	0.0	1.7	2	0	0	2	2	2	1	Beta-eliminating	lyase
TPP_enzyme_N	PF02776.13	gi|292657105|ref|YP_003537002.1|	-	0.16	11.4	1.2	5.1	6.5	0.0	2.4	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
SLA_LP_auto_ag	PF05889.8	gi|292657105|ref|YP_003537002.1|	-	0.17	10.3	0.0	0.24	9.8	0.0	1.2	1	0	0	1	1	1	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
Abhydrolase_1	PF00561.15	gi|292657106|ref|YP_003537003.1|	-	2.5e-23	82.8	0.0	3.1e-23	82.5	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|292657106|ref|YP_003537003.1|	-	2.1e-16	60.5	10.9	3.8e-16	59.6	7.5	1.4	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Esterase	PF00756.15	gi|292657106|ref|YP_003537003.1|	-	0.0074	15.7	0.0	0.031	13.6	0.0	1.9	2	0	0	2	2	2	1	Putative	esterase
Cys_Met_Meta_PP	PF01053.15	gi|292657107|ref|YP_003537004.1|	-	1.9e-130	434.6	0.0	2.2e-130	434.4	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|292657107|ref|YP_003537004.1|	-	9.9e-09	34.6	0.0	1.4e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|292657107|ref|YP_003537004.1|	-	8.7e-06	25.0	2.1	1.5e-05	24.2	1.5	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|292657107|ref|YP_003537004.1|	-	0.00011	21.1	0.0	0.00024	19.9	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-V
SLA_LP_auto_ag	PF05889.8	gi|292657107|ref|YP_003537004.1|	-	0.098	11.1	0.0	0.15	10.5	0.0	1.2	1	0	0	1	1	1	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
DNA_ligase_aden	PF01653.13	gi|292657108|ref|YP_003537005.1|	-	2.6e-106	355.1	0.0	3.6e-106	354.6	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.11	gi|292657108|ref|YP_003537005.1|	-	1.5e-27	95.0	6.4	1.6e-27	94.9	3.3	1.8	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.2	gi|292657108|ref|YP_003537005.1|	-	3.5e-18	65.2	0.5	1.1e-14	54.0	0.1	3.3	2	1	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|292657108|ref|YP_003537005.1|	-	5.7e-18	64.8	2.4	8.6e-12	45.0	0.6	3.4	3	0	0	3	3	3	2	Helix-hairpin-helix	domain
BRCT	PF00533.21	gi|292657108|ref|YP_003537005.1|	-	2e-10	40.6	0.0	3.4e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
HHH	PF00633.18	gi|292657108|ref|YP_003537005.1|	-	1.7e-06	27.4	0.1	0.36	10.6	0.0	4.0	4	0	0	4	4	4	2	Helix-hairpin-helix	motif
DNA_ligase_ZBD	PF03119.11	gi|292657108|ref|YP_003537005.1|	-	6.2e-06	25.8	4.1	1.8e-05	24.3	2.8	1.9	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PTCB-BRCT	PF12738.2	gi|292657108|ref|YP_003537005.1|	-	0.012	15.4	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	twin	BRCT	domain
DNA_ligase_A_M	PF01068.16	gi|292657108|ref|YP_003537005.1|	-	0.061	12.6	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	ATP	dependent	DNA	ligase	domain
ABC2_membrane_2	PF12679.2	gi|292657109|ref|YP_003537006.1|	-	3.9e-42	144.0	18.8	5.1e-42	143.6	13.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|292657109|ref|YP_003537006.1|	-	3.4e-16	59.1	26.3	1.4e-15	57.0	18.2	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|292657109|ref|YP_003537006.1|	-	2.1e-07	30.3	19.0	2.1e-07	30.3	13.2	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|292657109|ref|YP_003537006.1|	-	2.2e-07	30.4	5.2	2.2e-07	30.4	3.6	2.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|292657110|ref|YP_003537007.1|	-	2e-29	102.6	0.0	2.9e-29	102.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|292657110|ref|YP_003537007.1|	-	4.5e-12	46.5	0.0	1e-07	32.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|292657110|ref|YP_003537007.1|	-	3.9e-05	24.0	0.0	8.2e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.1	gi|292657110|ref|YP_003537007.1|	-	0.0016	18.0	0.1	0.016	14.7	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|292657110|ref|YP_003537007.1|	-	0.0041	16.3	0.0	0.0061	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|292657110|ref|YP_003537007.1|	-	0.0047	16.4	0.1	0.0099	15.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ArgK	PF03308.11	gi|292657110|ref|YP_003537007.1|	-	0.0094	14.7	0.0	0.016	13.9	0.0	1.3	1	0	0	1	1	1	1	ArgK	protein
AAA_10	PF12846.2	gi|292657110|ref|YP_003537007.1|	-	0.011	15.2	0.1	0.24	10.7	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
SMC_N	PF02463.14	gi|292657110|ref|YP_003537007.1|	-	0.017	14.3	0.0	3.3	6.8	0.0	2.1	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|292657110|ref|YP_003537007.1|	-	0.017	15.4	0.1	0.029	14.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|292657110|ref|YP_003537007.1|	-	0.018	15.0	0.0	0.042	13.8	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|292657110|ref|YP_003537007.1|	-	0.02	14.8	0.1	0.057	13.3	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|292657110|ref|YP_003537007.1|	-	0.071	12.8	0.0	0.54	9.9	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|292657110|ref|YP_003537007.1|	-	0.081	12.8	0.0	0.39	10.6	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_19	PF13245.1	gi|292657110|ref|YP_003537007.1|	-	0.1	12.3	0.3	1.1	8.9	0.0	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
VIT1	PF01988.14	gi|292657112|ref|YP_003537009.1|	-	5.4e-08	32.5	4.2	0.0002	20.9	1.2	2.0	1	1	1	2	2	2	2	VIT	family
Peptidase_C8	PF03569.8	gi|292657112|ref|YP_003537009.1|	-	0.099	11.9	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	C8
DUF3411	PF11891.3	gi|292657112|ref|YP_003537009.1|	-	0.1	12.2	0.1	0.1	12.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3411)
MCPsignal	PF00015.16	gi|292657113|ref|YP_003537010.1|	-	2.9e-46	157.6	53.2	2.9e-44	151.1	21.9	3.1	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_9	PF13426.1	gi|292657113|ref|YP_003537010.1|	-	1.7e-06	28.3	0.0	1.2e-05	25.5	0.0	2.5	2	1	0	2	2	2	1	PAS	domain
PAS_4	PF08448.5	gi|292657113|ref|YP_003537010.1|	-	2.9e-05	24.0	0.6	2.9e-05	24.0	0.4	3.7	3	2	0	3	3	3	1	PAS	fold
PAS	PF00989.19	gi|292657113|ref|YP_003537010.1|	-	4.6e-05	23.1	0.0	0.00027	20.6	0.0	2.5	1	1	0	1	1	1	1	PAS	fold
CENP-F_leu_zip	PF10473.4	gi|292657113|ref|YP_003537010.1|	-	0.00074	19.3	8.6	0.00074	19.3	5.9	2.7	2	1	1	3	3	3	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3450	PF11932.3	gi|292657113|ref|YP_003537010.1|	-	0.00077	18.8	7.1	0.00077	18.8	5.0	2.8	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF3450)
TPR_MLP1_2	PF07926.7	gi|292657113|ref|YP_003537010.1|	-	0.0013	18.5	3.7	0.0013	18.5	2.5	3.7	3	1	1	4	4	4	1	TPR/MLP1/MLP2-like	protein
DUF948	PF06103.6	gi|292657113|ref|YP_003537010.1|	-	0.0031	17.3	1.2	0.0031	17.3	0.9	4.8	2	2	3	5	5	5	2	Bacterial	protein	of	unknown	function	(DUF948)
HSBP1	PF06825.7	gi|292657113|ref|YP_003537010.1|	-	0.014	14.9	2.1	0.05	13.1	0.2	2.9	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
Laminin_II	PF06009.7	gi|292657113|ref|YP_003537010.1|	-	0.059	13.1	31.9	0.067	12.9	2.2	4.7	2	2	2	4	4	4	0	Laminin	Domain	II
AAA_13	PF13166.1	gi|292657113|ref|YP_003537010.1|	-	0.097	11.1	23.1	0.092	11.1	6.9	2.1	1	1	1	2	2	2	0	AAA	domain
IFT57	PF10498.4	gi|292657113|ref|YP_003537010.1|	-	0.12	11.1	11.0	0.065	11.9	1.4	2.3	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
Spectrin	PF00435.16	gi|292657113|ref|YP_003537010.1|	-	0.32	11.3	18.1	1.2	9.4	1.3	3.8	1	1	1	3	3	3	0	Spectrin	repeat
Syntaxin-6_N	PF09177.6	gi|292657113|ref|YP_003537010.1|	-	0.51	10.7	25.3	0.54	10.7	0.9	5.0	3	2	2	5	5	5	0	Syntaxin	6,	N-terminal
PhageMin_Tail	PF10145.4	gi|292657113|ref|YP_003537010.1|	-	0.53	9.8	26.7	0.1	12.2	8.7	2.8	1	1	0	2	2	2	0	Phage-related	minor	tail	protein
Spc7	PF08317.6	gi|292657113|ref|YP_003537010.1|	-	0.61	8.6	18.4	0.6	8.7	4.7	2.6	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Syntaxin	PF00804.20	gi|292657113|ref|YP_003537010.1|	-	0.81	9.8	18.8	0.33	11.1	2.0	4.5	2	2	1	3	3	3	0	Syntaxin
DUF1664	PF07889.7	gi|292657113|ref|YP_003537010.1|	-	1.1	9.0	19.4	1.6	8.5	2.6	4.4	1	1	5	6	6	6	0	Protein	of	unknown	function	(DUF1664)
Seryl_tRNA_N	PF02403.17	gi|292657113|ref|YP_003537010.1|	-	1.3	9.0	18.1	0.94	9.5	0.8	4.2	1	1	3	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
Tropomyosin_1	PF12718.2	gi|292657113|ref|YP_003537010.1|	-	1.7	8.5	26.0	3	7.6	6.0	2.7	2	0	0	2	2	2	0	Tropomyosin	like
TMF_TATA_bd	PF12325.3	gi|292657113|ref|YP_003537010.1|	-	2	8.1	23.3	0.039	13.6	4.4	4.2	3	2	0	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
APG17	PF04108.7	gi|292657113|ref|YP_003537010.1|	-	2	7.1	19.8	0.16	10.7	2.4	4.0	2	2	2	4	4	4	0	Autophagy	protein	Apg17
TMPIT	PF07851.8	gi|292657113|ref|YP_003537010.1|	-	2.7	6.9	6.5	3.6	6.5	1.2	2.3	2	0	0	2	2	2	0	TMPIT-like	protein
Atg14	PF10186.4	gi|292657113|ref|YP_003537010.1|	-	2.8	6.8	10.0	3	6.7	2.1	2.3	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IncA	PF04156.9	gi|292657113|ref|YP_003537010.1|	-	8.9	5.8	17.5	0.3	10.6	3.3	3.1	2	2	0	2	2	2	0	IncA	protein
Cytochrom_C_2	PF01322.15	gi|292657113|ref|YP_003537010.1|	-	8.9	6.8	24.5	3.2	8.3	3.6	3.2	2	2	1	3	3	3	0	Cytochrome	C'
UvrC_HhH_N	PF08459.6	gi|292657114|ref|YP_003537011.1|	-	1.8e-41	141.2	0.0	3.4e-41	140.3	0.0	1.5	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH	PF00633.18	gi|292657114|ref|YP_003537011.1|	-	4.2e-13	48.1	0.3	1.5e-08	33.8	0.1	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|292657114|ref|YP_003537011.1|	-	6.8e-12	45.3	2.1	8.6e-11	41.8	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|292657114|ref|YP_003537011.1|	-	4.3e-10	39.3	0.0	9.2e-10	38.2	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
GIY-YIG	PF01541.19	gi|292657114|ref|YP_003537011.1|	-	1.5e-07	31.6	0.0	2.7e-07	30.8	0.0	1.4	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.14	gi|292657114|ref|YP_003537011.1|	-	3.5e-07	29.5	3.0	9.4e-07	28.1	2.1	1.7	1	0	0	1	1	1	1	UvrB/uvrC	motif
IMS_HHH	PF11798.3	gi|292657114|ref|YP_003537011.1|	-	3.6e-05	23.5	0.0	0.067	13.2	0.0	2.6	2	0	0	2	2	2	2	IMS	family	HHH	motif
5_3_exonuc	PF01367.15	gi|292657114|ref|YP_003537011.1|	-	7.2e-05	22.9	0.0	0.015	15.4	0.0	2.8	2	1	1	3	3	3	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_8	PF14716.1	gi|292657114|ref|YP_003537011.1|	-	0.021	14.9	0.0	3.6	7.8	0.0	2.7	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
GHMP_kinases_C	PF08544.8	gi|292657114|ref|YP_003537011.1|	-	0.035	14.3	0.0	6.8	6.9	0.0	3.0	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
HHH_3	PF12836.2	gi|292657114|ref|YP_003537011.1|	-	0.11	12.4	0.0	0.32	10.9	0.0	1.8	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
Ldh_1_N	PF00056.18	gi|292657115|ref|YP_003537012.1|	-	6.1e-39	133.0	0.2	8.7e-39	132.5	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|292657115|ref|YP_003537012.1|	-	4.8e-32	111.0	0.0	7.5e-32	110.4	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Semialdhyde_dh	PF01118.19	gi|292657115|ref|YP_003537012.1|	-	0.063	13.5	0.1	0.12	12.6	0.1	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Auto_anti-p27	PF06677.7	gi|292657116|ref|YP_003537013.1|	-	1.2e-19	69.7	0.8	1.7e-19	69.3	0.5	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.2	gi|292657116|ref|YP_003537013.1|	-	0.00066	19.4	1.7	0.0013	18.4	1.2	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|292657116|ref|YP_003537013.1|	-	0.0013	18.3	0.9	0.0021	17.7	0.6	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
GFA	PF04828.9	gi|292657116|ref|YP_003537013.1|	-	0.0078	16.1	1.1	0.24	11.3	0.0	2.4	1	1	1	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
DUF3279	PF11682.3	gi|292657116|ref|YP_003537013.1|	-	0.026	14.0	0.3	0.059	12.9	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3279)
FYVE	PF01363.16	gi|292657116|ref|YP_003537013.1|	-	0.079	12.8	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	FYVE	zinc	finger
zinc-ribbons_6	PF07191.7	gi|292657116|ref|YP_003537013.1|	-	0.1	12.4	1.0	0.17	11.6	0.7	1.3	1	0	0	1	1	1	0	zinc-ribbons
Rtf2	PF04641.7	gi|292657116|ref|YP_003537013.1|	-	0.27	10.4	6.2	0.19	10.9	3.1	1.6	1	1	0	1	1	1	0	Rtf2	RING-finger
zf-ribbon_3	PF13248.1	gi|292657116|ref|YP_003537013.1|	-	0.69	9.1	4.8	1.8	7.8	3.3	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF2072	PF09845.4	gi|292657116|ref|YP_003537013.1|	-	2	8.3	7.1	0.45	10.4	2.1	2.0	1	1	1	2	2	2	0	Zn-ribbon	containing	protein	(DUF2072)
Lar_restr_allev	PF14354.1	gi|292657116|ref|YP_003537013.1|	-	4.7	7.5	6.5	19	5.6	4.5	2.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Usp	PF00582.21	gi|292657117|ref|YP_003537014.1|	-	6.4e-19	68.5	0.2	7.7e-19	68.2	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ERCC4	PF02732.10	gi|292657118|ref|YP_003537015.1|	-	3e-24	85.4	0.1	9.4e-24	83.7	0.0	2.0	2	0	0	2	2	2	1	ERCC4	domain
Helicase_C	PF00271.26	gi|292657118|ref|YP_003537015.1|	-	1.2e-19	69.9	0.0	3.2e-19	68.5	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|292657118|ref|YP_003537015.1|	-	2.4e-17	62.9	0.0	7.9e-17	61.2	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.1	gi|292657118|ref|YP_003537015.1|	-	1.7e-11	44.0	0.7	4.9e-10	39.4	0.1	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
ResIII	PF04851.10	gi|292657118|ref|YP_003537015.1|	-	3.7e-11	43.2	0.0	1.3e-10	41.4	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HHH_2	PF12826.2	gi|292657118|ref|YP_003537015.1|	-	6e-11	42.0	0.5	3.9e-10	39.4	0.2	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|292657118|ref|YP_003537015.1|	-	7.5e-08	31.6	0.3	2.8e-05	23.5	0.0	3.3	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|292657118|ref|YP_003537015.1|	-	0.0025	17.9	0.3	0.011	15.9	0.0	2.2	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
Helicase_C_2	PF13307.1	gi|292657118|ref|YP_003537015.1|	-	0.012	15.5	0.0	0.041	13.8	0.0	1.9	1	0	0	1	1	1	0	Helicase	C-terminal	domain
P-II	PF00543.17	gi|292657118|ref|YP_003537015.1|	-	0.039	14.4	0.1	0.3	11.5	0.0	2.6	2	1	0	2	2	1	0	Nitrogen	regulatory	protein	P-II
IMS_HHH	PF11798.3	gi|292657118|ref|YP_003537015.1|	-	0.13	12.3	0.2	2.2	8.4	0.0	3.0	3	0	0	3	3	3	0	IMS	family	HHH	motif
DUF2072	PF09845.4	gi|292657120|ref|YP_003537017.1|	-	1.4e-28	99.4	1.4	2.5e-14	53.3	0.0	2.4	2	1	0	2	2	2	2	Zn-ribbon	containing	protein	(DUF2072)
zf-C2H2_6	PF13912.1	gi|292657120|ref|YP_003537017.1|	-	0.13	12.2	0.1	0.13	12.2	0.1	1.6	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF1451	PF07295.6	gi|292657120|ref|YP_003537017.1|	-	0.14	11.9	0.9	0.52	10.0	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1451)
zinc_ribbon_2	PF13240.1	gi|292657120|ref|YP_003537017.1|	-	0.37	10.3	5.1	0.63	9.6	3.5	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|292657120|ref|YP_003537017.1|	-	0.44	10.5	2.0	1.1	9.2	1.4	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|292657120|ref|YP_003537017.1|	-	0.99	9.2	2.6	2.2	8.1	1.8	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2H2	PF00096.21	gi|292657120|ref|YP_003537017.1|	-	2.8	8.4	4.5	1.2	9.5	0.4	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF2073	PF09846.4	gi|292657121|ref|YP_003537018.1|	-	2.7e-48	161.9	0.5	3.3e-48	161.6	0.3	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.18	gi|292657122|ref|YP_003537019.1|	-	2.1e-15	56.6	0.0	3.1e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|292657122|ref|YP_003537019.1|	-	2e-11	43.6	0.4	3.3e-05	23.4	0.1	2.8	2	2	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.16	gi|292657122|ref|YP_003537019.1|	-	2.8e-08	33.1	0.0	6.7e-05	22.2	0.1	2.6	1	1	2	3	3	3	2	ADP-ribosylation	factor	family
AAA_17	PF13207.1	gi|292657122|ref|YP_003537019.1|	-	1.1e-05	26.2	0.2	2.1e-05	25.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|292657122|ref|YP_003537019.1|	-	1.5e-05	25.3	0.1	2.1e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
FeoB_N	PF02421.13	gi|292657122|ref|YP_003537019.1|	-	4.3e-05	22.8	1.2	0.0006	19.1	0.8	2.5	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|292657122|ref|YP_003537019.1|	-	8.4e-05	23.0	0.0	0.00028	21.3	0.0	1.8	1	1	0	1	1	1	1	Miro-like	protein
Ras	PF00071.17	gi|292657122|ref|YP_003537019.1|	-	8.9e-05	21.9	0.1	0.018	14.4	0.0	2.4	2	1	0	2	2	2	1	Ras	family
NB-ARC	PF00931.17	gi|292657122|ref|YP_003537019.1|	-	0.0001	21.2	0.0	0.00045	19.1	0.0	1.8	2	0	0	2	2	2	1	NB-ARC	domain
SRPRB	PF09439.5	gi|292657122|ref|YP_003537019.1|	-	0.00011	21.4	0.0	0.049	12.8	0.0	2.2	2	0	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.13	gi|292657122|ref|YP_003537019.1|	-	0.00028	19.9	0.0	0.00052	19.1	0.0	1.5	1	1	1	2	2	2	1	Septin
Dynamin_N	PF00350.18	gi|292657122|ref|YP_003537019.1|	-	0.0015	18.3	0.0	0.15	11.8	0.0	2.5	1	1	1	2	2	2	1	Dynamin	family
AAA_28	PF13521.1	gi|292657122|ref|YP_003537019.1|	-	0.0029	17.5	0.1	0.044	13.7	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|292657122|ref|YP_003537019.1|	-	0.003	17.5	0.0	0.0043	17.0	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|292657122|ref|YP_003537019.1|	-	0.003	17.7	0.0	0.019	15.1	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|292657122|ref|YP_003537019.1|	-	0.0048	16.6	0.0	0.037	13.7	0.0	2.1	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|292657122|ref|YP_003537019.1|	-	0.0059	16.3	0.1	0.04	13.6	0.0	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|292657122|ref|YP_003537019.1|	-	0.0073	16.4	0.1	0.015	15.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|292657122|ref|YP_003537019.1|	-	0.0082	15.2	0.0	0.024	13.7	0.0	1.8	1	1	1	2	2	2	1	Zeta	toxin
RNA_helicase	PF00910.17	gi|292657122|ref|YP_003537019.1|	-	0.009	16.1	0.0	0.016	15.3	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
cobW	PF02492.14	gi|292657122|ref|YP_003537019.1|	-	0.01	15.2	0.1	3.6	6.9	0.0	2.4	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|292657122|ref|YP_003537019.1|	-	0.015	14.1	0.3	0.38	9.4	0.0	2.7	3	1	0	3	3	3	0	ArgK	protein
ATP-synt_ab	PF00006.20	gi|292657122|ref|YP_003537019.1|	-	0.018	14.5	0.0	0.023	14.1	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ABC_tran	PF00005.22	gi|292657122|ref|YP_003537019.1|	-	0.019	15.2	0.0	0.036	14.3	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.1	gi|292657122|ref|YP_003537019.1|	-	0.026	14.4	0.0	0.055	13.3	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|292657122|ref|YP_003537019.1|	-	0.033	13.8	0.0	0.078	12.6	0.0	1.6	2	0	0	2	2	1	0	NACHT	domain
ATP_bind_1	PF03029.12	gi|292657122|ref|YP_003537019.1|	-	0.053	13.0	0.0	2.2	7.7	0.0	2.6	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1_C	PF08438.5	gi|292657122|ref|YP_003537019.1|	-	0.055	13.6	0.2	0.14	12.4	0.0	1.7	2	0	0	2	2	2	0	GTPase	of	unknown	function	C-terminal
NTPase_1	PF03266.10	gi|292657122|ref|YP_003537019.1|	-	0.059	13.0	0.1	0.22	11.2	0.0	2.1	2	1	0	2	2	2	0	NTPase
PduV-EutP	PF10662.4	gi|292657122|ref|YP_003537019.1|	-	0.07	12.6	0.1	9	5.7	0.0	2.8	2	1	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_25	PF13481.1	gi|292657122|ref|YP_003537019.1|	-	0.071	12.5	0.0	0.11	11.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|292657122|ref|YP_003537019.1|	-	0.072	12.7	0.0	0.24	11.0	0.0	1.9	1	1	1	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RuvB_N	PF05496.7	gi|292657122|ref|YP_003537019.1|	-	0.075	12.0	0.0	0.15	11.1	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus