# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|292654179|ref|YP_003534076.1| - 3.1e-24 84.7 0.1 7.4e-24 83.5 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|292654179|ref|YP_003534076.1| - 3.7e-11 43.7 0.1 1.2e-10 42.0 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292654179|ref|YP_003534076.1| - 1.1e-08 35.5 0.6 5.2e-07 30.0 0.6 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|292654179|ref|YP_003534076.1| - 5e-08 33.5 1.0 1.3e-06 28.9 1.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|292654179|ref|YP_003534076.1| - 0.00063 19.7 0.3 0.0018 18.3 0.3 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|292654179|ref|YP_003534076.1| - 0.00086 18.8 0.4 0.006 16.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|292654179|ref|YP_003534076.1| - 0.0028 17.4 0.0 0.0067 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|292654179|ref|YP_003534076.1| - 0.0038 17.0 0.0 0.01 15.6 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|292654179|ref|YP_003534076.1| - 0.0039 16.4 0.0 0.0072 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|292654179|ref|YP_003534076.1| - 0.004 17.3 0.0 0.019 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|292654179|ref|YP_003534076.1| - 0.0048 16.1 0.0 0.0075 15.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain T2SSE PF00437.20 gi|292654179|ref|YP_003534076.1| - 0.0079 15.3 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|292654179|ref|YP_003534076.1| - 0.013 16.0 0.0 0.034 14.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|292654179|ref|YP_003534076.1| - 0.024 15.2 0.0 0.056 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain DNA_pol3_delta2 PF13177.6 gi|292654179|ref|YP_003534076.1| - 0.047 13.5 0.1 0.17 11.7 0.1 1.9 2 1 0 2 2 2 0 DNA polymerase III, delta subunit TIP49 PF06068.13 gi|292654179|ref|YP_003534076.1| - 0.051 12.8 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|292654179|ref|YP_003534076.1| - 0.055 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MutS_III PF05192.18 gi|292654179|ref|YP_003534076.1| - 0.063 13.5 3.3 0.38 11.0 3.3 2.0 1 1 0 1 1 1 0 MutS domain III AAA_assoc_2 PF16193.5 gi|292654179|ref|YP_003534076.1| - 0.074 13.4 0.3 0.3 11.5 0.3 2.0 1 0 0 1 1 1 0 AAA C-terminal domain KAP_NTPase PF07693.14 gi|292654179|ref|YP_003534076.1| - 0.078 12.2 0.4 0.34 10.1 0.4 1.9 1 1 0 1 1 1 0 KAP family P-loop domain FtsK_SpoIIIE PF01580.18 gi|292654179|ref|YP_003534076.1| - 0.084 12.2 1.5 0.2 10.9 0.4 2.1 2 1 0 2 2 2 0 FtsK/SpoIIIE family ATPase PF06745.13 gi|292654179|ref|YP_003534076.1| - 0.092 12.1 0.1 0.22 10.9 0.1 1.6 1 0 0 1 1 1 0 KaiC AAA_24 PF13479.6 gi|292654179|ref|YP_003534076.1| - 0.12 12.1 0.3 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|292654179|ref|YP_003534076.1| - 0.17 11.8 0.1 0.66 9.9 0.1 2.0 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|292654179|ref|YP_003534076.1| - 0.18 12.2 0.0 0.42 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|292654179|ref|YP_003534076.1| - 0.52 10.1 4.0 7.1 6.4 2.3 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase Peptidase_S24 PF00717.23 gi|292654180|ref|YP_003534077.1| - 0.0039 17.1 0.0 0.0071 16.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|292654181|ref|YP_003534078.1| - 3.8e-13 49.3 0.0 6.3e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|292654181|ref|YP_003534078.1| - 3.6e-12 46.8 2.7 9.1e-12 45.5 2.7 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292654181|ref|YP_003534078.1| - 5.3e-09 36.9 0.5 1.1e-08 35.9 0.5 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|292654181|ref|YP_003534078.1| - 0.062 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Oxidored_FMN PF00724.20 gi|292654182|ref|YP_003534079.1| - 4.2e-64 217.0 0.0 4.7e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|292654182|ref|YP_003534079.1| - 0.0011 18.5 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|292654182|ref|YP_003534079.1| - 0.025 13.8 0.1 0.078 12.2 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Zip PF02535.22 gi|292654183|ref|YP_003534080.1| - 1.1e-16 61.0 17.7 9.2e-12 44.8 10.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter AA_kinase PF00696.28 gi|292654185|ref|YP_003534082.1| - 1.9e-47 161.9 4.1 3e-47 161.2 4.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|292654185|ref|YP_003534082.1| - 2.2e-17 62.6 0.8 3e-09 36.5 0.0 3.2 4 0 0 4 4 4 2 ACT domain ACT PF01842.25 gi|292654185|ref|YP_003534082.1| - 1.3e-13 50.4 3.2 5e-06 26.2 0.1 3.1 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|292654185|ref|YP_003534082.1| - 1.4e-05 25.6 0.0 0.064 13.8 0.0 2.7 2 0 0 2 2 2 2 ACT domain BON PF04972.17 gi|292654185|ref|YP_003534082.1| - 0.0025 18.1 0.2 0.033 14.5 0.1 2.8 2 0 0 2 2 2 1 BON domain ACT_6 PF13740.6 gi|292654185|ref|YP_003534082.1| - 0.0033 17.4 0.9 2.9 7.9 0.1 3.1 3 0 0 3 3 3 2 ACT domain Beta_elim_lyase PF01212.21 gi|292654187|ref|YP_003534084.1| - 5.7e-72 242.5 0.0 8.6e-72 241.9 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Catalase_C PF18011.1 gi|292654187|ref|YP_003534084.1| - 0.06 13.0 0.2 0.11 12.1 0.2 1.4 1 0 0 1 1 1 0 C-terminal domain found in long catalases HrpB4 PF09502.10 gi|292654187|ref|YP_003534084.1| - 0.11 12.4 0.2 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB4) Metallophos_2 PF12850.7 gi|292654188|ref|YP_003534085.1| - 2.4e-31 109.1 0.0 2.9e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292654188|ref|YP_003534085.1| - 6.4e-12 46.4 0.1 5.6e-11 43.3 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|292654188|ref|YP_003534085.1| - 0.012 15.0 0.0 0.66 9.2 0.0 2.1 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily IMP_cyclohyd PF07826.11 gi|292654189|ref|YP_003534086.1| - 3.5e-67 225.7 0.0 4.2e-67 225.5 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.10 gi|292654190|ref|YP_003534087.1| - 1.9e-07 31.3 0.0 2.3e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DUF2007 PF09413.10 gi|292654190|ref|YP_003534087.1| - 0.25 11.5 2.0 10 6.3 0.1 2.6 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein DEAD PF00270.29 gi|292654191|ref|YP_003534088.1| - 1.4e-23 83.6 0.0 2.3e-23 82.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|292654191|ref|YP_003534088.1| - 3e-08 34.1 0.3 1e-07 32.4 0.3 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|292654191|ref|YP_003534088.1| - 8.4e-07 29.3 0.0 6.3e-06 26.5 0.0 2.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|292654191|ref|YP_003534088.1| - 0.00029 20.6 0.0 0.00095 19.0 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CXCR4_N PF12109.8 gi|292654191|ref|YP_003534088.1| - 0.036 14.3 0.1 0.12 12.6 0.1 1.9 1 0 0 1 1 1 0 CXCR4 Chemokine receptor N terminal HHH PF00633.23 gi|292654191|ref|YP_003534088.1| - 0.13 12.2 0.1 1.2 9.1 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif Fer4_15 PF13459.6 gi|292654192|ref|YP_003534089.1| - 4.9e-22 78.4 4.0 5.9e-22 78.2 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|292654192|ref|YP_003534089.1| - 6.3e-06 26.6 0.8 1.3e-05 25.7 0.8 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|292654192|ref|YP_003534089.1| - 0.047 13.5 1.7 1.2 9.0 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|292654192|ref|YP_003534089.1| - 0.14 12.3 2.8 2.5 8.3 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ATPase PF06745.13 gi|292654194|ref|YP_003534091.1| - 0.001 18.5 0.5 0.0013 18.1 0.5 1.1 1 0 0 1 1 1 1 KaiC DUF2391 PF09622.10 gi|292654195|ref|YP_003534092.1| - 6.1e-07 29.0 1.1 1.1e-06 28.3 1.1 1.5 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF3483 PF11982.8 gi|292654195|ref|YP_003534092.1| - 0.12 12.0 2.1 0.15 11.7 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) Methyltransf_11 PF08241.12 gi|292654196|ref|YP_003534093.1| - 4.4e-23 81.8 0.0 7.6e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292654196|ref|YP_003534093.1| - 2.3e-19 69.9 0.0 5.4e-19 68.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654196|ref|YP_003534093.1| - 1.1e-17 64.3 0.0 1.3e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292654196|ref|YP_003534093.1| - 4.9e-14 52.5 0.0 6.5e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292654196|ref|YP_003534093.1| - 4e-10 39.4 0.0 7.9e-10 38.5 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|292654196|ref|YP_003534093.1| - 4.8e-10 40.1 0.0 7.5e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|292654196|ref|YP_003534093.1| - 8.2e-06 25.5 0.0 1.5e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|292654196|ref|YP_003534093.1| - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|292654196|ref|YP_003534093.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|292654196|ref|YP_003534093.1| - 0.002 17.1 0.0 0.0042 16.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|292654196|ref|YP_003534093.1| - 0.0038 17.1 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|292654196|ref|YP_003534093.1| - 0.011 15.4 0.0 0.021 14.6 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|292654196|ref|YP_003534093.1| - 0.058 13.4 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.27 gi|292654197|ref|YP_003534094.1| - 4.3e-34 118.0 0.0 6.7e-34 117.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|292654197|ref|YP_003534094.1| - 1e-15 57.6 0.8 1e-15 57.6 0.8 2.5 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|292654197|ref|YP_003534094.1| - 1.2e-08 35.1 0.0 0.00038 20.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|292654197|ref|YP_003534094.1| - 4.1e-05 23.8 1.0 0.00015 22.0 0.7 2.3 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.6 gi|292654197|ref|YP_003534094.1| - 0.00096 19.4 0.0 0.0049 17.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292654197|ref|YP_003534094.1| - 0.0026 17.3 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|292654197|ref|YP_003534094.1| - 0.0027 17.5 0.0 0.0075 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292654197|ref|YP_003534094.1| - 0.0031 17.9 0.2 0.008 16.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|292654197|ref|YP_003534094.1| - 0.0049 16.8 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|292654197|ref|YP_003534094.1| - 0.0069 16.8 0.1 0.075 13.5 0.1 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|292654197|ref|YP_003534094.1| - 0.028 14.9 0.1 0.045 14.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|292654197|ref|YP_003534094.1| - 0.032 13.8 0.3 0.22 11.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|292654197|ref|YP_003534094.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|292654197|ref|YP_003534094.1| - 0.2 11.4 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|292654197|ref|YP_003534094.1| - 0.2 10.4 0.2 1.1 8.0 0.0 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|292654198|ref|YP_003534095.1| - 1.6e-26 93.2 31.0 9.8e-16 58.0 11.4 3.4 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|292654199|ref|YP_003534096.1| - 4e-24 85.4 0.1 6e-24 84.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|292654199|ref|YP_003534096.1| - 1.3e-21 77.7 0.4 1.8e-21 77.2 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|292654199|ref|YP_003534096.1| - 6.1e-09 36.3 0.5 8.5e-09 35.8 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|292654199|ref|YP_003534096.1| - 1.9e-05 24.6 1.0 2.7e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|292654199|ref|YP_003534096.1| - 0.0011 18.7 7.8 0.0024 17.6 7.8 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AI-2E_transport PF01594.16 gi|292654200|ref|YP_003534097.1| - 3.1e-16 59.5 32.4 2e-15 56.8 32.4 1.8 1 1 0 1 1 1 1 AI-2E family transporter DUF5531 PF17671.1 gi|292654200|ref|YP_003534097.1| - 0.04 13.8 1.0 0.085 12.7 0.6 1.9 1 1 0 1 1 1 0 Family of unknown function (DUF5531) Rhodanese PF00581.20 gi|292654201|ref|YP_003534098.1| - 3.7e-36 123.9 0.0 1.7e-19 70.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|292654202|ref|YP_003534099.1| - 4.8e-34 117.1 0.3 2.9e-17 63.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain SCFA_trans PF02667.14 gi|292654203|ref|YP_003534100.1| - 2.9e-126 422.1 24.1 3.4e-126 421.9 24.1 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DUF2939 PF11159.8 gi|292654204|ref|YP_003534101.1| - 0.11 12.9 0.6 0.11 12.9 0.6 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2939) DUF883 PF05957.13 gi|292654204|ref|YP_003534101.1| - 1.6 9.4 7.8 0.42 11.3 0.8 2.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) CdvA PF18822.1 gi|292654205|ref|YP_003534102.1| - 0.16 11.8 1.0 0.23 11.3 0.4 1.5 2 0 0 2 2 2 0 CdvA-like coiled-coil domain UvrB_inter PF17757.1 gi|292654206|ref|YP_003534103.1| - 3e-31 107.4 0.1 1.4e-30 105.3 0.0 2.2 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|292654206|ref|YP_003534103.1| - 2.1e-21 75.5 0.6 3.9e-21 74.6 0.6 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|292654206|ref|YP_003534103.1| - 3e-16 59.7 0.1 7.9e-16 58.4 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|292654206|ref|YP_003534103.1| - 7.3e-09 35.1 6.7 7.3e-09 35.1 6.7 3.7 3 0 0 3 3 3 1 UvrB/uvrC motif ResIII PF04851.15 gi|292654206|ref|YP_003534103.1| - 5.8e-07 29.7 0.0 1.8e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|292654206|ref|YP_003534103.1| - 0.00011 22.0 0.1 0.006 16.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|292654206|ref|YP_003534103.1| - 0.00076 19.8 0.5 1.3 9.3 0.6 2.7 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|292654206|ref|YP_003534103.1| - 0.0034 17.2 0.0 0.024 14.4 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.6 gi|292654206|ref|YP_003534103.1| - 0.011 15.8 0.0 0.049 13.6 0.0 2.2 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|292654206|ref|YP_003534103.1| - 0.021 14.9 0.8 0.066 13.3 0.1 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|292654206|ref|YP_003534103.1| - 0.046 14.0 0.9 9.5 6.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|292654206|ref|YP_003534103.1| - 0.057 13.8 0.1 6.8 7.1 0.0 3.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) NUDIX PF00293.28 gi|292654207|ref|YP_003534104.1| - 6.3e-21 74.8 1.1 7.6e-21 74.5 1.1 1.1 1 0 0 1 1 1 1 NUDIX domain TauE PF01925.19 gi|292654209|ref|YP_003534106.1| - 1.6e-25 90.1 26.0 1.6e-25 90.1 26.0 1.8 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE Usp PF00582.26 gi|292654210|ref|YP_003534107.1| - 4.6e-33 114.7 1.4 5.4e-33 114.5 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family FR47 PF08445.10 gi|292654210|ref|YP_003534107.1| - 0.033 14.2 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein 4HBT PF03061.22 gi|292654211|ref|YP_003534108.1| - 7.8e-18 64.6 0.3 1.2e-17 64.0 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|292654211|ref|YP_003534108.1| - 0.00059 20.2 0.4 0.00083 19.7 0.4 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT_2 PF13279.6 gi|292654211|ref|YP_003534108.1| - 0.00075 20.0 0.0 0.00096 19.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|292654211|ref|YP_003534108.1| - 0.0093 15.5 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain Band_7 PF01145.25 gi|292654212|ref|YP_003534109.1| - 5.5e-36 124.2 2.2 1.2e-35 123.1 2.2 1.5 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|292654212|ref|YP_003534109.1| - 0.024 14.4 0.0 0.042 13.6 0.0 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family DUF5337 PF17272.2 gi|292654213|ref|YP_003534110.1| - 0.61 9.9 5.3 3.8 7.4 0.9 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) DUF2116 PF09889.9 gi|292654213|ref|YP_003534110.1| - 1.9 8.5 3.2 4.5 7.3 0.3 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2839 PF10999.8 gi|292654213|ref|YP_003534110.1| - 3.4 8.1 8.0 0.33 11.3 1.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) 2_5_RNA_ligase2 PF13563.6 gi|292654214|ref|YP_003534111.1| - 3.2e-17 62.9 0.0 4.1e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|292654214|ref|YP_003534111.1| - 9.1e-07 29.0 0.0 0.0081 16.3 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase p450 PF00067.22 gi|292654215|ref|YP_003534112.1| - 1.2e-89 301.2 0.0 1.5e-89 300.9 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Helicase_C_2 PF13307.6 gi|292654216|ref|YP_003534113.1| - 1.7e-33 116.2 0.0 4.3e-33 114.9 0.0 1.7 2 0 0 2 2 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|292654216|ref|YP_003534113.1| - 1.9e-18 66.7 0.0 3.9e-18 65.7 0.0 1.6 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|292654216|ref|YP_003534113.1| - 9.3e-09 35.3 0.3 8e-06 25.7 0.1 3.4 2 1 1 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|292654216|ref|YP_003534113.1| - 5.2e-08 33.1 0.1 1.5e-05 25.1 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|292654216|ref|YP_003534113.1| - 0.00096 18.6 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 KaiC HBB PF06777.11 gi|292654216|ref|YP_003534113.1| - 0.011 15.4 0.5 0.08 12.6 0.0 2.2 2 0 0 2 2 2 0 Helical and beta-bridge domain T2SSE PF00437.20 gi|292654216|ref|YP_003534113.1| - 0.011 14.8 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|292654216|ref|YP_003534113.1| - 0.012 15.2 0.0 0.43 10.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|292654216|ref|YP_003534113.1| - 0.014 14.9 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.6 gi|292654216|ref|YP_003534113.1| - 0.018 15.3 0.9 0.19 12.0 0.4 2.5 1 1 1 2 2 2 0 AAA domain Asparaginase_C PF17763.1 gi|292654216|ref|YP_003534113.1| - 0.02 15.1 0.0 0.074 13.3 0.0 1.9 2 0 0 2 2 1 0 Glutaminase/Asparaginase C-terminal domain AAA_16 PF13191.6 gi|292654216|ref|YP_003534113.1| - 0.021 15.2 2.8 0.025 15.0 0.3 2.2 2 0 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|292654216|ref|YP_003534113.1| - 0.033 13.1 0.0 0.079 11.8 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|292654216|ref|YP_003534113.1| - 0.044 13.0 0.2 0.96 8.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|292654216|ref|YP_003534113.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_34 PF13872.6 gi|292654216|ref|YP_003534113.1| - 0.074 11.9 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA_7 PF12775.7 gi|292654216|ref|YP_003534113.1| - 0.11 12.1 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SecA_DEAD PF07517.14 gi|292654216|ref|YP_003534113.1| - 0.12 11.7 0.0 0.37 10.0 0.0 1.8 1 0 0 1 1 1 0 SecA DEAD-like domain DUF1440 PF07274.12 gi|292654217|ref|YP_003534114.1| - 0.00068 20.0 1.7 0.00081 19.8 0.6 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|292654217|ref|YP_003534114.1| - 0.01 15.8 4.3 0.024 14.6 4.3 1.6 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF4282 PF14110.6 gi|292654217|ref|YP_003534114.1| - 0.36 11.6 7.7 4.9 7.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) OTCace PF00185.24 gi|292654218|ref|YP_003534115.1| - 2e-51 174.2 0.0 2.7e-51 173.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|292654218|ref|YP_003534115.1| - 2.2e-49 167.3 0.0 3.1e-49 166.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Peptidase_M20 PF01546.28 gi|292654219|ref|YP_003534116.1| - 2.7e-27 95.8 0.1 4.4e-27 95.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292654219|ref|YP_003534116.1| - 9.3e-05 22.3 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|292654219|ref|YP_003534116.1| - 0.015 15.0 0.1 0.039 13.6 0.1 1.7 1 1 0 1 1 1 0 Peptidase family M28 Aminotran_3 PF00202.21 gi|292654220|ref|YP_003534117.1| - 1.3e-111 373.2 0.1 1.7e-111 372.8 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|292654220|ref|YP_003534117.1| - 0.02 13.5 0.0 0.061 11.8 0.0 1.7 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme AA_kinase PF00696.28 gi|292654221|ref|YP_003534118.1| - 5.2e-34 117.9 3.0 8.1e-34 117.3 3.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|292654222|ref|YP_003534119.1| - 4e-26 91.8 0.0 6.4e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|292654222|ref|YP_003534119.1| - 7.6e-07 29.4 0.0 3.5e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RimK PF08443.11 gi|292654223|ref|YP_003534120.1| - 6.5e-25 87.8 0.0 8.6e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|292654223|ref|YP_003534120.1| - 1.8e-09 37.8 0.0 2.7e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|292654223|ref|YP_003534120.1| - 3.2e-09 36.4 0.0 6e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|292654223|ref|YP_003534120.1| - 2e-06 27.5 0.0 3.9e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|292654223|ref|YP_003534120.1| - 4.1e-06 26.5 0.1 5.6e-05 22.8 0.0 2.5 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|292654223|ref|YP_003534120.1| - 3e-05 23.6 0.0 0.00016 21.2 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|292654223|ref|YP_003534120.1| - 0.0055 16.0 0.0 0.12 11.6 0.0 2.2 1 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|292654223|ref|YP_003534120.1| - 0.13 11.9 0.1 0.75 9.4 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain Lyase_1 PF00206.20 gi|292654225|ref|YP_003534122.1| - 1.6e-56 192.0 0.1 2.9e-56 191.1 0.1 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|292654225|ref|YP_003534122.1| - 1.3e-15 57.9 3.1 1.3e-15 57.9 3.1 2.7 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal DUF4262 PF14081.6 gi|292654225|ref|YP_003534122.1| - 0.15 12.3 0.1 0.42 10.8 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4262) Arginosuc_synth PF00764.19 gi|292654226|ref|YP_003534123.1| - 5.1e-146 486.9 0.0 6e-146 486.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|292654226|ref|YP_003534123.1| - 1.6e-05 24.5 0.0 2.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|292654226|ref|YP_003534123.1| - 0.00093 18.1 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|292654226|ref|YP_003534123.1| - 0.002 17.3 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|292654226|ref|YP_003534123.1| - 0.0076 15.9 0.1 0.018 14.7 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase Na_H_Exchanger PF00999.21 gi|292654228|ref|YP_003534125.1| - 2.8e-49 167.9 43.8 3.4e-49 167.6 43.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|292654229|ref|YP_003534126.1| - 6.2e-18 64.4 0.2 1.7e-17 63.0 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain HGTP_anticodon PF03129.20 gi|292654231|ref|YP_003534128.1| - 1.8e-22 79.3 0.0 3.5e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|292654231|ref|YP_003534128.1| - 1e-07 32.1 0.0 2.5e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF3969 PF13108.6 gi|292654231|ref|YP_003534128.1| - 0.036 14.1 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) LytR_C PF13399.6 gi|292654231|ref|YP_003534128.1| - 0.08 13.9 0.1 1 10.4 0.0 2.5 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator CBS PF00571.28 gi|292654232|ref|YP_003534129.1| - 6.3e-31 106.6 17.1 1.2e-09 38.5 0.9 4.1 4 0 0 4 4 4 4 CBS domain TusA PF01206.17 gi|292654232|ref|YP_003534129.1| - 0.052 13.4 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Sulfurtransferase TusA RDD PF06271.12 gi|292654234|ref|YP_003534131.1| - 0.057 13.6 0.6 0.21 11.8 0.6 1.7 2 0 0 2 2 2 0 RDD family ABC_tran PF00005.27 gi|292654235|ref|YP_003534132.1| - 2.2e-36 125.4 0.0 1e-35 123.2 0.0 1.9 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|292654235|ref|YP_003534132.1| - 1.8e-16 60.4 0.1 4e-16 59.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292654235|ref|YP_003534132.1| - 6.5e-07 29.5 0.2 0.0022 17.9 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|292654235|ref|YP_003534132.1| - 1.8e-06 28.2 0.1 8.3e-06 26.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292654235|ref|YP_003534132.1| - 3e-05 23.6 0.0 4.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292654235|ref|YP_003534132.1| - 0.00057 20.3 0.5 0.0023 18.4 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|292654235|ref|YP_003534132.1| - 0.0091 15.9 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase Sigma54_activat PF00158.26 gi|292654235|ref|YP_003534132.1| - 0.011 15.4 0.1 5.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.29 gi|292654235|ref|YP_003534132.1| - 0.024 15.1 0.1 0.15 12.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292654235|ref|YP_003534132.1| - 0.025 14.6 0.1 0.46 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|292654235|ref|YP_003534132.1| - 0.025 14.3 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|292654235|ref|YP_003534132.1| - 0.087 12.5 0.0 0.091 12.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 gi|292654235|ref|YP_003534132.1| - 0.12 12.9 0.0 0.35 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|292654235|ref|YP_003534132.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|292654235|ref|YP_003534132.1| - 0.14 11.7 0.0 5.9 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|292654235|ref|YP_003534132.1| - 0.17 11.2 0.0 0.34 10.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|292654236|ref|YP_003534133.1| - 2.2e-31 109.2 0.0 3.1e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292654236|ref|YP_003534133.1| - 2.9e-17 62.9 0.1 5.9e-17 61.9 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292654236|ref|YP_003534133.1| - 5.9e-08 32.9 0.1 5.7e-07 29.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292654236|ref|YP_003534133.1| - 3.9e-06 26.5 0.0 5.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|292654236|ref|YP_003534133.1| - 0.00062 20.1 0.2 0.17 12.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|292654236|ref|YP_003534133.1| - 0.012 16.0 0.3 0.022 15.2 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|292654236|ref|YP_003534133.1| - 0.016 14.8 0.1 0.022 14.4 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|292654236|ref|YP_003534133.1| - 0.019 15.1 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|292654236|ref|YP_003534133.1| - 0.025 14.3 0.1 0.27 10.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.12 gi|292654236|ref|YP_003534133.1| - 0.087 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.22 gi|292654237|ref|YP_003534134.1| - 1.7e-21 76.8 11.6 1.7e-21 76.8 11.6 2.7 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|292654237|ref|YP_003534134.1| - 7.8e-06 25.8 0.0 7.8e-06 25.8 0.0 4.4 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|292654238|ref|YP_003534135.1| - 7.4e-33 113.8 11.5 7.4e-33 113.8 11.5 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|292654239|ref|YP_003534136.1| - 7.8e-61 206.1 8.3 1.3e-60 205.4 8.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|292654239|ref|YP_003534136.1| - 2.2e-06 27.3 9.2 5.3e-06 26.1 9.2 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF296 PF03479.15 gi|292654241|ref|YP_003534138.1| - 2.2e-19 69.8 0.0 2.4e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain CAP59_mtransfer PF11735.8 gi|292654241|ref|YP_003534138.1| - 0.027 14.1 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 PolC_DP2 PF03833.13 gi|292654242|ref|YP_003534139.1| - 0 1330.0 0.0 0 1328.1 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Nop10p PF04135.12 gi|292654242|ref|YP_003534139.1| - 0.034 14.2 0.2 0.034 14.2 0.2 2.6 3 1 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family Sigma70_ner PF04546.13 gi|292654242|ref|YP_003534139.1| - 0.78 9.6 5.1 2.2 8.1 5.1 1.7 1 0 0 1 1 1 0 Sigma-70, non-essential region HypA PF01155.19 gi|292654242|ref|YP_003534139.1| - 0.83 9.7 15.3 2.7 8.0 0.4 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|292654242|ref|YP_003534139.1| - 0.88 9.6 11.9 12 6.0 0.1 2.9 2 1 0 2 2 2 0 zinc-ribbons DZR PF12773.7 gi|292654242|ref|YP_003534139.1| - 1.1 9.3 16.4 7.7 6.6 0.4 3.2 2 1 0 2 2 2 0 Double zinc ribbon PQQ_2 PF13360.6 gi|292654243|ref|YP_003534140.1| - 3e-23 82.6 22.9 5.8e-18 65.3 5.6 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|292654243|ref|YP_003534140.1| - 9.4e-19 67.3 27.4 2.6e-07 30.9 0.5 8.5 7 1 0 7 7 7 5 PQQ-like domain PQQ PF01011.21 gi|292654243|ref|YP_003534140.1| - 4.9e-10 38.9 0.5 0.00029 20.6 0.0 5.5 5 0 0 5 5 5 2 PQQ enzyme repeat Rubredoxin_2 PF18073.1 gi|292654244|ref|YP_003534141.1| - 0.00022 20.8 1.4 0.02 14.6 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain HypA PF01155.19 gi|292654244|ref|YP_003534141.1| - 0.00056 19.9 0.0 0.00062 19.8 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|292654244|ref|YP_003534141.1| - 0.013 15.0 0.5 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.20 gi|292654244|ref|YP_003534141.1| - 0.014 15.4 2.3 0.65 10.1 0.4 2.3 1 1 1 2 2 2 0 Rubredoxin DZR PF12773.7 gi|292654244|ref|YP_003534141.1| - 0.032 14.3 1.2 0.076 13.1 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|292654244|ref|YP_003534141.1| - 0.054 13.6 3.7 0.11 12.6 3.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain HalOD2 PF18547.1 gi|292654244|ref|YP_003534141.1| - 0.069 13.1 4.8 0.97 9.4 0.1 2.8 3 0 0 3 3 3 0 Halobacterial output domain 2 zinc_ribbon_2 PF13240.6 gi|292654244|ref|YP_003534141.1| - 0.071 12.8 4.5 0.87 9.4 4.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF2171 PF09939.9 gi|292654244|ref|YP_003534141.1| - 0.087 13.1 0.4 0.16 12.3 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2171) zf-ribbon_3 PF13248.6 gi|292654244|ref|YP_003534141.1| - 0.15 11.5 5.5 0.46 10.0 5.5 1.7 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|292654244|ref|YP_003534141.1| - 0.23 10.2 0.2 0.3 9.8 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|292654244|ref|YP_003534141.1| - 0.52 10.0 7.4 1.5 8.6 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-NADH-PPase PF09297.11 gi|292654244|ref|YP_003534141.1| - 1.4 8.7 5.1 11 5.8 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ApbA_C PF08546.11 gi|292654245|ref|YP_003534142.1| - 2.2e-33 115.1 0.8 2.2e-33 115.1 0.8 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|292654245|ref|YP_003534142.1| - 4.4e-27 94.6 0.1 6.9e-27 94.0 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sulfatase PF00884.23 gi|292654246|ref|YP_003534143.1| - 1.1e-45 156.4 0.8 1.8e-45 155.7 0.8 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|292654246|ref|YP_003534143.1| - 5.7e-11 42.6 1.3 1.3e-05 25.0 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|292654246|ref|YP_003534143.1| - 0.0081 15.3 0.1 0.019 14.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|292654246|ref|YP_003534143.1| - 0.036 12.7 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) CCDC144C PF14915.6 gi|292654246|ref|YP_003534143.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region NifU PF01106.17 gi|292654247|ref|YP_003534144.1| - 8.3e-14 51.5 0.0 1.2e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain Prok_Ub PF14454.6 gi|292654248|ref|YP_003534145.1| - 0.12 12.0 0.4 0.46 10.2 0.0 2.1 3 0 0 3 3 3 0 Prokaryotic Ubiquitin Snf7 PF03357.21 gi|292654248|ref|YP_003534145.1| - 1.6 8.3 4.8 3.6 7.2 2.3 2.0 1 1 1 2 2 2 0 Snf7 PPK2 PF03976.14 gi|292654250|ref|YP_003534147.1| - 1.6e-107 358.2 3.8 1.8e-107 358.0 3.8 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) AAA_33 PF13671.6 gi|292654250|ref|YP_003534147.1| - 0.06 13.5 0.3 1.3 9.2 0.3 2.4 1 1 0 1 1 1 0 AAA domain DHHA1 PF02272.19 gi|292654251|ref|YP_003534148.1| - 9.4e-20 71.4 1.4 3.2e-19 69.7 1.5 1.9 2 0 0 2 2 2 1 DHHA1 domain MFS_1 PF07690.16 gi|292654252|ref|YP_003534149.1| - 5e-26 91.5 63.8 5.3e-24 84.8 50.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292654252|ref|YP_003534149.1| - 0.69 8.7 14.3 0.49 9.2 6.0 2.9 3 0 0 3 3 3 0 MFS_1 like family FixP_N PF14715.6 gi|292654252|ref|YP_003534149.1| - 8.9 6.1 11.3 6.1 6.7 2.1 3.5 3 0 0 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP HEM4 PF02602.15 gi|292654253|ref|YP_003534150.1| - 2.8e-40 138.1 0.4 3.7e-40 137.7 0.5 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|292654253|ref|YP_003534150.1| - 0.16 11.8 0.0 0.43 10.5 0.0 1.7 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain TP_methylase PF00590.20 gi|292654254|ref|YP_003534151.1| - 3.6e-53 180.7 1.0 4.3e-53 180.4 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.20 gi|292654255|ref|YP_003534152.1| - 1.6e-65 220.4 0.8 5.3e-52 176.3 0.2 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|292654255|ref|YP_003534152.1| - 2.1e-09 37.6 0.0 6.1e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Tmemb_170 PF10190.9 gi|292654256|ref|YP_003534153.1| - 0.34 11.3 6.0 0.036 14.4 1.8 1.6 2 0 0 2 2 2 0 Putative transmembrane protein 170 DUF1616 PF07760.11 gi|292654257|ref|YP_003534154.1| - 0.13 11.7 0.1 0.14 11.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF4229 PF14012.6 gi|292654257|ref|YP_003534154.1| - 1.9 8.6 5.5 2.9 8.1 0.8 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) Aminotran_3 PF00202.21 gi|292654258|ref|YP_003534155.1| - 4.3e-67 226.5 0.0 6.3e-67 226.0 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|292654258|ref|YP_003534155.1| - 9.2e-05 21.8 0.0 0.00016 21.0 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II CPBP PF02517.16 gi|292654259|ref|YP_003534156.1| - 1.2e-06 28.7 8.1 4.4e-06 27.0 8.1 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease TMEM125 PF15109.6 gi|292654259|ref|YP_003534156.1| - 0.15 12.4 1.7 2.5 8.5 0.1 2.5 2 1 0 2 2 2 0 TMEM125 protein family P-II PF00543.22 gi|292654260|ref|YP_003534157.1| - 1.6e-33 115.3 0.1 1.9e-33 115.1 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|292654261|ref|YP_003534158.1| - 4.1e-96 322.1 38.5 4.7e-96 321.9 38.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|292654261|ref|YP_003534158.1| - 0.026 14.4 0.8 0.026 14.4 0.8 2.6 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.22 gi|292654262|ref|YP_003534159.1| - 5.6e-35 120.0 0.2 6.4e-35 119.8 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|292654263|ref|YP_003534160.1| - 1.3e-100 337.0 40.7 1.5e-100 336.8 40.7 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|292654263|ref|YP_003534160.1| - 0.016 15.1 0.2 0.016 15.1 0.2 3.2 3 0 0 3 3 3 0 Photosystem II protein Y (PsbY) Pilin_N PF07790.11 gi|292654263|ref|YP_003534160.1| - 0.047 14.6 2.4 0.077 13.9 0.1 2.7 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal ALAD PF00490.21 gi|292654264|ref|YP_003534161.1| - 1.8e-138 461.0 0.1 2.1e-138 460.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase PA PF02225.22 gi|292654264|ref|YP_003534161.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 PA domain DUF1684 PF07920.11 gi|292654264|ref|YP_003534161.1| - 0.14 12.4 0.2 0.58 10.4 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1684) RseC_MucC PF04246.12 gi|292654265|ref|YP_003534162.1| - 1.5 8.7 4.6 2.1 8.3 4.5 1.3 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC SNARE_assoc PF09335.11 gi|292654266|ref|YP_003534163.1| - 0.00068 20.1 0.5 0.00072 20.0 0.5 1.2 1 1 0 1 1 1 1 SNARE associated Golgi protein PyrI_C PF02748.15 gi|292654267|ref|YP_003534164.1| - 0.82 9.6 3.6 0.85 9.6 1.6 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain PHP PF02811.19 gi|292654268|ref|YP_003534165.1| - 6.7e-05 23.3 0.0 7.5e-05 23.1 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|292654268|ref|YP_003534165.1| - 0.0011 18.7 0.5 0.0033 17.1 0.0 2.0 2 0 0 2 2 2 1 PHP-associated DUF2795 PF11387.8 gi|292654269|ref|YP_003534166.1| - 0.13 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) NAD_binding_10 PF13460.6 gi|292654273|ref|YP_003534170.1| - 1.5e-21 77.1 0.1 2.4e-21 76.5 0.1 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|292654273|ref|YP_003534170.1| - 1.2e-14 54.4 0.0 1.9e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|292654273|ref|YP_003534170.1| - 3.6e-12 46.3 0.0 1.8e-11 44.0 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292654273|ref|YP_003534170.1| - 7e-08 31.8 0.0 1.9e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|292654273|ref|YP_003534170.1| - 7.1e-06 25.3 0.0 0.029 13.5 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|292654273|ref|YP_003534170.1| - 1.3e-05 24.8 0.0 2.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|292654273|ref|YP_003534170.1| - 9.4e-05 21.7 0.0 0.00017 20.9 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein TrkA_N PF02254.18 gi|292654273|ref|YP_003534170.1| - 0.0041 17.4 0.0 0.19 12.0 0.0 2.5 2 0 0 2 2 2 1 TrkA-N domain PAC2 PF09754.9 gi|292654273|ref|YP_003534170.1| - 0.038 14.0 0.0 0.061 13.3 0.0 1.4 1 1 0 1 1 1 0 PAC2 family CxxCxxCC PF03692.15 gi|292654274|ref|YP_003534171.1| - 0.00033 21.3 3.2 0.0065 17.1 3.2 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain zf-P11 PF03854.14 gi|292654275|ref|YP_003534172.1| - 0.069 12.8 0.3 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 P-11 zinc finger zf_UBZ PF18439.1 gi|292654275|ref|YP_003534172.1| - 0.14 11.8 0.8 14 5.4 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Helicase_C_2 PF13307.6 gi|292654276|ref|YP_003534173.1| - 1.9e-20 73.7 0.0 2.8e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|292654276|ref|YP_003534173.1| - 8.1e-06 25.6 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|292654276|ref|YP_003534173.1| - 7.4e-05 22.8 0.0 0.017 15.1 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|292654276|ref|YP_003534173.1| - 0.00031 21.0 0.0 0.0018 18.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|292654276|ref|YP_003534173.1| - 0.00048 19.9 0.0 0.17 11.7 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|292654276|ref|YP_003534173.1| - 0.00072 19.3 0.2 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|292654276|ref|YP_003534173.1| - 0.0039 17.6 0.2 0.019 15.3 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|292654276|ref|YP_003534173.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|292654276|ref|YP_003534173.1| - 0.014 15.0 2.0 0.37 10.4 0.0 3.3 3 1 0 4 4 4 0 AAA domain DUF2075 PF09848.9 gi|292654276|ref|YP_003534173.1| - 0.034 13.4 0.0 3.9 6.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|292654276|ref|YP_003534173.1| - 0.052 13.0 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DXP_redisom_C PF08436.12 gi|292654276|ref|YP_003534173.1| - 0.077 13.2 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAA PF00004.29 gi|292654276|ref|YP_003534173.1| - 0.11 13.0 0.0 0.98 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) OrsD PF12013.8 gi|292654276|ref|YP_003534173.1| - 0.12 12.9 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D AAA_19 PF13245.6 gi|292654276|ref|YP_003534173.1| - 0.17 12.2 0.0 0.45 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain UPF0175 PF03683.13 gi|292654277|ref|YP_003534174.1| - 1e-07 31.6 0.0 1.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) NMD3 PF04981.13 gi|292654278|ref|YP_003534175.1| - 1.4e-60 204.8 0.0 1.6e-60 204.6 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|292654278|ref|YP_003534175.1| - 0.0041 17.4 0.0 0.38 11.1 0.0 3.0 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|292654278|ref|YP_003534175.1| - 0.0046 16.9 4.8 0.054 13.5 1.7 3.0 2 1 0 2 2 2 1 Double zinc ribbon DUF2703 PF10865.8 gi|292654278|ref|YP_003534175.1| - 0.007 16.5 0.5 0.041 14.1 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF2703) GFA PF04828.14 gi|292654278|ref|YP_003534175.1| - 0.019 15.3 1.0 17 5.8 0.0 3.3 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|292654278|ref|YP_003534175.1| - 0.059 13.1 4.3 1.2 8.9 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|292654278|ref|YP_003534175.1| - 0.15 12.0 18.9 2.2 8.3 0.2 4.2 4 1 0 4 4 4 0 Nudix N-terminal eIF-5_eIF-2B PF01873.17 gi|292654278|ref|YP_003534175.1| - 1.8 8.5 3.0 0.57 10.1 0.3 1.6 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-TFIIB PF13453.6 gi|292654278|ref|YP_003534175.1| - 2.8 7.3 10.5 5.5 6.4 2.7 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|292654278|ref|YP_003534175.1| - 7.9 6.0 10.3 6.8 6.3 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|292654278|ref|YP_003534175.1| - 8 6.2 14.9 0.97 9.1 0.4 3.1 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain PknG_rubred PF16919.5 gi|292654278|ref|YP_003534175.1| - 8 6.6 7.1 6.1 7.0 0.1 3.3 4 0 0 4 4 4 0 Protein kinase G rubredoxin domain Pribosyltran PF00156.27 gi|292654279|ref|YP_003534176.1| - 3e-26 91.8 0.0 1.1e-25 90.0 0.0 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|292654279|ref|YP_003534176.1| - 0.0098 15.3 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|292654279|ref|YP_003534176.1| - 0.072 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Peptidase_M48 PF01435.18 gi|292654280|ref|YP_003534177.1| - 1.7e-42 145.4 0.0 2.7e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|292654280|ref|YP_003534177.1| - 1.2e-07 31.2 0.0 1e-05 24.9 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF3007 PF11460.8 gi|292654280|ref|YP_003534177.1| - 0.087 13.1 0.4 0.087 13.1 0.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3007) MgtE PF01769.16 gi|292654280|ref|YP_003534177.1| - 0.16 12.4 7.4 0.34 11.3 0.1 2.2 2 0 0 2 2 2 0 Divalent cation transporter DUF2268 PF10026.9 gi|292654280|ref|YP_003534177.1| - 0.23 11.0 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2207 PF09972.9 gi|292654280|ref|YP_003534177.1| - 0.25 10.1 4.7 1.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) CDP-OH_P_transf PF01066.21 gi|292654280|ref|YP_003534177.1| - 2.1 9.1 6.8 1.1 10.1 1.5 2.6 2 1 0 2 2 2 0 CDP-alcohol phosphatidyltransferase HemY_N PF07219.13 gi|292654280|ref|YP_003534177.1| - 2.2 8.5 6.5 6.4 7.0 0.1 3.0 2 1 0 2 2 2 0 HemY protein N-terminus DUF3021 PF11457.8 gi|292654280|ref|YP_003534177.1| - 2.5 8.5 11.6 8.3 6.8 1.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3021) VKOR PF07884.14 gi|292654280|ref|YP_003534177.1| - 2.8 8.1 7.9 12 6.1 3.2 2.2 2 0 0 2 2 2 0 Vitamin K epoxide reductase family FA_desaturase PF00487.24 gi|292654280|ref|YP_003534177.1| - 8 6.2 9.3 5.8 6.7 2.7 2.5 2 1 0 2 2 2 0 Fatty acid desaturase CdiI_2 PF18593.1 gi|292654281|ref|YP_003534178.1| - 0.022 15.4 0.1 0.069 13.8 0.1 1.8 2 0 0 2 2 2 0 CdiI immunity protein Rad51 PF08423.11 gi|292654282|ref|YP_003534179.1| - 5.4e-72 242.1 0.0 1.7e-71 240.5 0.0 1.6 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|292654282|ref|YP_003534179.1| - 1.5e-11 44.7 0.0 3.8e-11 43.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|292654282|ref|YP_003534179.1| - 2.4e-06 27.1 0.2 0.00014 21.5 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif RecA PF00154.21 gi|292654282|ref|YP_003534179.1| - 3e-06 26.9 0.0 0.0031 17.0 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|292654282|ref|YP_003534179.1| - 5.9e-06 26.0 0.0 9.3e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|292654282|ref|YP_003534179.1| - 0.00027 21.0 0.0 0.00077 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|292654282|ref|YP_003534179.1| - 0.00047 20.3 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|292654282|ref|YP_003534179.1| - 0.00062 19.2 0.3 0.00098 18.5 0.3 1.7 1 1 0 1 1 1 1 KaiC DNA_pol_lambd_f PF10391.9 gi|292654282|ref|YP_003534179.1| - 0.00082 19.2 0.1 0.0077 16.0 0.0 2.6 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|292654282|ref|YP_003534179.1| - 0.047 14.0 0.0 0.69 10.2 0.0 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|292654282|ref|YP_003534179.1| - 0.1 13.0 0.0 0.57 10.6 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 gi|292654282|ref|YP_003534179.1| - 0.13 12.6 0.0 0.46 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF3898 PF13037.6 gi|292654282|ref|YP_003534179.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3898) Pyr_redox_2 PF07992.14 gi|292654283|ref|YP_003534180.1| - 1.2e-24 87.1 0.0 3.7e-24 85.5 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|292654283|ref|YP_003534180.1| - 0.0022 18.0 0.9 3 7.8 0.1 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding DUF1641 PF07849.11 gi|292654284|ref|YP_003534181.1| - 1.3e-12 47.3 2.0 1.5e-11 44.0 0.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1641) NifU_N PF01592.16 gi|292654285|ref|YP_003534182.1| - 2e-27 95.9 0.1 2.4e-27 95.6 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Phage_TAC_7 PF10109.9 gi|292654285|ref|YP_003534182.1| - 0.05 13.7 0.1 0.091 12.9 0.1 1.5 1 1 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 MS_channel PF00924.18 gi|292654286|ref|YP_003534183.1| - 2.4e-15 56.7 0.2 4.1e-15 55.9 0.2 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF373 PF04123.13 gi|292654286|ref|YP_003534183.1| - 0.018 14.5 0.4 0.023 14.2 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) TM_helix PF05552.12 gi|292654286|ref|YP_003534183.1| - 1.4 9.0 8.4 0.1 12.6 1.5 2.5 3 0 0 3 3 3 0 Conserved TM helix Aminotran_5 PF00266.19 gi|292654287|ref|YP_003534184.1| - 2.6e-146 487.4 0.0 3.3e-146 487.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|292654287|ref|YP_003534184.1| - 3.5e-12 46.3 0.1 7.6e-12 45.2 0.2 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|292654287|ref|YP_003534184.1| - 5.1e-11 42.4 0.0 1.4e-09 37.7 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|292654287|ref|YP_003534184.1| - 1.2e-05 24.7 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|292654287|ref|YP_003534184.1| - 1.9e-05 23.4 0.0 3.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|292654287|ref|YP_003534184.1| - 0.00021 20.1 0.0 0.00051 18.9 0.0 1.5 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain HATPase_c PF02518.26 gi|292654288|ref|YP_003534185.1| - 8.5e-17 61.7 0.1 1.7e-16 60.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|292654288|ref|YP_003534185.1| - 2.2e-11 43.6 1.2 3.9e-11 42.8 1.2 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|292654288|ref|YP_003534185.1| - 1e-06 28.9 0.8 2.2e-06 27.9 0.2 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|292654288|ref|YP_003534185.1| - 0.0024 18.1 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain GGDEF_2 PF17853.1 gi|292654288|ref|YP_003534185.1| - 0.0066 16.7 1.7 0.016 15.5 1.7 1.6 1 0 0 1 1 1 1 GGDEF-like domain PAS PF00989.25 gi|292654288|ref|YP_003534185.1| - 0.0099 15.9 0.0 0.13 12.2 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|292654288|ref|YP_003534185.1| - 0.086 12.8 0.3 0.3 11.0 0.2 2.0 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain Nbl1_Borealin_N PF10444.9 gi|292654288|ref|YP_003534185.1| - 0.15 11.7 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal DUF424 PF04242.13 gi|292654289|ref|YP_003534186.1| - 2.2e-26 91.9 0.0 2.5e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Plectin PF00681.20 gi|292654289|ref|YP_003534186.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Plectin repeat TPR_2 PF07719.17 gi|292654290|ref|YP_003534187.1| - 2.5e-24 83.4 10.6 5.9e-06 26.0 0.2 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|292654290|ref|YP_003534187.1| - 1.3e-23 81.7 5.5 4.6e-07 29.4 0.0 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|292654290|ref|YP_003534187.1| - 4.2e-18 65.7 20.5 1.8e-08 34.9 3.7 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|292654290|ref|YP_003534187.1| - 6.6e-18 63.4 1.0 0.013 15.7 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|292654290|ref|YP_003534187.1| - 1.3e-15 57.5 15.7 1.6e-09 37.9 5.1 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|292654290|ref|YP_003534187.1| - 1e-13 50.7 8.5 3.1e-05 23.6 0.7 4.9 3 1 2 5 5 5 3 TPR repeat TPR_14 PF13428.6 gi|292654290|ref|YP_003534187.1| - 5.8e-12 45.4 19.9 5.6e-06 26.7 1.6 5.2 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|292654290|ref|YP_003534187.1| - 1.1e-10 41.1 1.5 0.0005 20.3 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|292654290|ref|YP_003534187.1| - 6.4e-10 39.0 13.1 0.00022 21.3 4.8 3.9 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|292654290|ref|YP_003534187.1| - 6.7e-09 35.2 9.9 0.00035 20.4 0.1 5.0 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|292654290|ref|YP_003534187.1| - 3.8e-07 30.5 8.1 0.0017 18.8 0.1 4.0 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|292654290|ref|YP_003534187.1| - 1e-05 25.9 7.7 1.3 9.8 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|292654290|ref|YP_003534187.1| - 7.8e-05 22.4 22.4 0.014 15.3 0.9 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|292654290|ref|YP_003534187.1| - 0.0002 21.5 0.1 0.19 11.9 0.1 3.2 1 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|292654290|ref|YP_003534187.1| - 0.0014 19.0 3.7 0.0014 19.0 3.7 4.5 4 1 0 4 4 4 1 Tetratricopeptide repeat YfiO PF13525.6 gi|292654290|ref|YP_003534187.1| - 0.0035 17.1 0.1 0.0056 16.4 0.1 1.4 1 0 0 1 1 1 1 Outer membrane lipoprotein DUF4332 PF14229.6 gi|292654290|ref|YP_003534187.1| - 0.0053 17.0 0.0 0.0095 16.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DUF3856 PF12968.7 gi|292654290|ref|YP_003534187.1| - 0.0097 16.0 10.9 1.3 9.1 0.5 4.1 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|292654290|ref|YP_003534187.1| - 0.025 14.9 8.1 0.21 11.9 0.2 3.4 1 1 2 3 3 3 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|292654290|ref|YP_003534187.1| - 0.035 14.2 0.2 13 5.9 0.0 3.0 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_5 PF12688.7 gi|292654290|ref|YP_003534187.1| - 0.073 13.3 1.5 1.1 9.5 0.1 2.4 2 1 0 2 2 2 0 Tetratrico peptide repeat Wzy_C_2 PF11846.8 gi|292654290|ref|YP_003534187.1| - 2.5 8.0 6.8 4.8 7.1 0.3 2.5 3 0 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal His_Phos_1 PF00300.22 gi|292654291|ref|YP_003534188.1| - 6.5e-24 84.7 1.4 8.3e-24 84.3 1.4 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) LigT_PEase PF02834.16 gi|292654292|ref|YP_003534189.1| - 4.3e-25 87.7 0.0 3e-13 49.8 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|292654292|ref|YP_003534189.1| - 9.8e-18 64.5 0.0 1.2e-17 64.2 0.0 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|292654292|ref|YP_003534189.1| - 5e-06 26.5 0.0 5.6e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Phage_P2_GpU PF06995.11 gi|292654292|ref|YP_003534189.1| - 0.11 12.1 0.0 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Phage P2 GpU Ribosomal_L39 PF00832.20 gi|292654293|ref|YP_003534190.1| - 5.9e-20 70.6 8.9 7.2e-20 70.3 8.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|292654294|ref|YP_003534191.1| - 4.6e-09 36.4 0.1 5.9e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_S24e PF01282.19 gi|292654294|ref|YP_003534191.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S24e eIF-6 PF01912.18 gi|292654295|ref|YP_003534192.1| - 2.5e-71 239.1 0.0 3e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|292654296|ref|YP_003534193.1| - 2.9e-08 33.9 0.0 3e-08 33.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|292654297|ref|YP_003534194.1| - 1.9e-22 79.4 13.3 1.9e-22 79.4 13.3 2.2 1 1 0 1 1 1 1 Prefoldin subunit Spc7 PF08317.11 gi|292654297|ref|YP_003534194.1| - 8.9e-06 24.8 22.5 0.0012 17.8 2.9 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein DivIC PF04977.15 gi|292654297|ref|YP_003534194.1| - 7.7e-05 22.4 6.4 7.7e-05 22.4 6.4 3.2 2 1 1 3 3 2 2 Septum formation initiator APG6_N PF17675.1 gi|292654297|ref|YP_003534194.1| - 8.5e-05 23.1 27.3 0.015 15.8 6.5 2.2 2 0 0 2 2 2 2 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|292654297|ref|YP_003534194.1| - 0.00062 19.8 20.2 0.026 14.5 2.5 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HCMV_UL139 PF12507.8 gi|292654297|ref|YP_003534194.1| - 0.0011 19.3 6.6 0.022 15.1 3.7 2.2 2 0 0 2 2 2 1 Human Cytomegalovirus UL139 protein YabA PF06156.13 gi|292654297|ref|YP_003534194.1| - 0.0011 19.5 12.7 0.1 13.3 0.1 2.2 2 0 0 2 2 2 1 Initiation control protein YabA Spectrin PF00435.21 gi|292654297|ref|YP_003534194.1| - 0.0014 19.1 19.1 0.11 13.0 1.9 2.4 2 0 0 2 2 2 2 Spectrin repeat GAS PF13851.6 gi|292654297|ref|YP_003534194.1| - 0.0018 17.6 19.2 0.033 13.6 0.7 2.0 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding CK2S PF15011.6 gi|292654297|ref|YP_003534194.1| - 0.0033 17.3 16.6 0.16 11.8 8.4 2.2 1 1 0 2 2 2 2 Casein Kinase 2 substrate DUF4337 PF14235.6 gi|292654297|ref|YP_003534194.1| - 0.0033 17.6 15.0 0.095 12.8 8.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4337) FapA PF03961.13 gi|292654297|ref|YP_003534194.1| - 0.0038 15.9 12.7 0.14 10.7 5.5 2.0 1 1 1 2 2 2 2 Flagellar Assembly Protein A Prefoldin_2 PF01920.20 gi|292654297|ref|YP_003534194.1| - 0.0039 17.1 23.9 0.018 15.0 9.2 3.3 1 1 2 3 3 2 2 Prefoldin subunit DUF3450 PF11932.8 gi|292654297|ref|YP_003534194.1| - 0.0041 16.5 23.2 0.042 13.2 2.4 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) DUF5082 PF16888.5 gi|292654297|ref|YP_003534194.1| - 0.0042 17.4 19.6 0.066 13.5 2.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF5082) Filament PF00038.21 gi|292654297|ref|YP_003534194.1| - 0.0045 16.6 21.7 0.12 11.9 12.2 2.0 2 0 0 2 2 2 2 Intermediate filament protein DUF812 PF05667.11 gi|292654297|ref|YP_003534194.1| - 0.0045 15.9 21.6 0.075 11.9 1.6 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) bZIP_1 PF00170.21 gi|292654297|ref|YP_003534194.1| - 0.0045 17.0 11.9 0.22 11.7 0.9 2.6 2 1 0 2 2 2 2 bZIP transcription factor TMF_DNA_bd PF12329.8 gi|292654297|ref|YP_003534194.1| - 0.0055 16.7 20.1 0.079 13.0 5.7 2.7 2 1 0 2 2 2 2 TATA element modulatory factor 1 DNA binding TMF_TATA_bd PF12325.8 gi|292654297|ref|YP_003534194.1| - 0.0059 16.8 25.5 0.035 14.3 4.5 2.3 1 1 0 2 2 2 1 TATA element modulatory factor 1 TATA binding BLOC1_2 PF10046.9 gi|292654297|ref|YP_003534194.1| - 0.0077 16.5 21.1 0.018 15.3 2.3 3.0 2 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4201 PF13870.6 gi|292654297|ref|YP_003534194.1| - 0.0082 15.9 11.0 0.46 10.2 3.8 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4201) TolA_bind_tri PF16331.5 gi|292654297|ref|YP_003534194.1| - 0.0093 16.0 2.7 0.0093 16.0 2.7 3.5 2 1 1 3 3 2 2 TolA binding protein trimerisation Tropomyosin_1 PF12718.7 gi|292654297|ref|YP_003534194.1| - 0.0096 16.1 26.6 0.024 14.8 4.6 2.4 2 1 1 3 3 3 1 Tropomyosin like DUF3287 PF11690.8 gi|292654297|ref|YP_003534194.1| - 0.012 15.4 1.7 4 7.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) Csm1_N PF18504.1 gi|292654297|ref|YP_003534194.1| - 0.013 15.8 22.3 0.054 13.8 4.2 3.4 2 1 2 4 4 2 0 Csm1 N-terminal domain DUF1664 PF07889.12 gi|292654297|ref|YP_003534194.1| - 0.014 15.5 17.1 0.26 11.3 1.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) FliD_C PF07195.12 gi|292654297|ref|YP_003534194.1| - 0.017 14.5 10.5 0.11 11.9 5.5 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ATP-synt_D PF01813.17 gi|292654297|ref|YP_003534194.1| - 0.018 14.9 7.9 0.077 12.8 4.2 2.2 2 0 0 2 2 2 0 ATP synthase subunit D DUF4988 PF16378.5 gi|292654297|ref|YP_003534194.1| - 0.021 14.5 9.5 0.1 12.3 0.3 3.0 2 1 1 3 3 3 0 Domain of unknown function ZapB PF06005.12 gi|292654297|ref|YP_003534194.1| - 0.022 15.2 31.1 0.45 11.0 8.5 2.6 1 1 1 2 2 2 0 Cell division protein ZapB GPS2_interact PF15784.5 gi|292654297|ref|YP_003534194.1| - 0.022 15.2 7.0 0.022 15.2 7.0 2.3 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain DHR10 PF18595.1 gi|292654297|ref|YP_003534194.1| - 0.023 14.7 24.6 0.11 12.5 3.4 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FliJ PF02050.16 gi|292654297|ref|YP_003534194.1| - 0.025 14.8 25.7 0.051 13.8 0.6 3.0 2 1 1 3 3 3 0 Flagellar FliJ protein Seryl_tRNA_N PF02403.22 gi|292654297|ref|YP_003534194.1| - 0.025 14.8 17.6 0.34 11.2 2.2 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain GrpE PF01025.19 gi|292654297|ref|YP_003534194.1| - 0.025 14.2 18.9 0.51 10.0 2.5 2.2 2 0 0 2 2 2 0 GrpE TSC22 PF01166.18 gi|292654297|ref|YP_003534194.1| - 0.026 14.8 5.0 0.026 14.8 5.0 3.1 2 1 1 3 3 2 0 TSC-22/dip/bun family FlaC_arch PF05377.11 gi|292654297|ref|YP_003534194.1| - 0.027 14.9 21.3 0.066 13.6 4.8 3.6 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) Sec34 PF04136.15 gi|292654297|ref|YP_003534194.1| - 0.028 14.3 12.2 0.14 12.0 1.2 2.2 2 0 0 2 2 2 0 Sec34-like family NPV_P10 PF05531.12 gi|292654297|ref|YP_003534194.1| - 0.029 14.8 19.7 0.28 11.7 0.6 2.7 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein ABC_tran_CTD PF16326.5 gi|292654297|ref|YP_003534194.1| - 0.032 14.5 8.4 0.032 14.5 8.4 3.1 2 1 1 3 3 3 0 ABC transporter C-terminal domain LPP PF04728.13 gi|292654297|ref|YP_003534194.1| - 0.034 14.5 20.7 0.11 12.9 4.0 3.9 2 2 2 4 4 3 0 Lipoprotein leucine-zipper PRKG1_interact PF15898.5 gi|292654297|ref|YP_003534194.1| - 0.035 15.0 13.2 0.34 11.8 6.1 2.3 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Tropomyosin PF00261.20 gi|292654297|ref|YP_003534194.1| - 0.05 13.0 19.9 0.22 10.9 9.8 2.1 2 0 0 2 2 2 0 Tropomyosin Phage_GP20 PF06810.11 gi|292654297|ref|YP_003534194.1| - 0.05 13.4 18.5 0.46 10.3 2.3 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 CC2-LZ PF16516.5 gi|292654297|ref|YP_003534194.1| - 0.052 13.9 1.9 0.052 13.9 1.9 2.7 2 1 0 2 2 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Dor1 PF04124.12 gi|292654297|ref|YP_003534194.1| - 0.055 12.2 9.5 0.12 11.0 2.8 2.1 2 0 0 2 2 2 0 Dor1-like family E2F_CC-MB PF16421.5 gi|292654297|ref|YP_003534194.1| - 0.057 13.8 19.9 0.15 12.4 2.6 2.7 2 1 0 2 2 2 0 E2F transcription factor CC-MB domain UPF0242 PF06785.11 gi|292654297|ref|YP_003534194.1| - 0.062 13.4 28.0 0.24 11.5 15.6 2.1 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Fib_alpha PF08702.10 gi|292654297|ref|YP_003534194.1| - 0.073 13.3 14.6 0.82 9.9 0.7 2.3 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Golgin_A5 PF09787.9 gi|292654297|ref|YP_003534194.1| - 0.076 12.5 30.7 0.049 13.1 17.9 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 DUF4618 PF15397.6 gi|292654297|ref|YP_003534194.1| - 0.079 12.4 17.1 0.11 11.9 0.8 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) DUF2046 PF09755.9 gi|292654297|ref|YP_003534194.1| - 0.081 12.1 14.0 0.11 11.7 7.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein H4 (DUF2046) DUF4407 PF14362.6 gi|292654297|ref|YP_003534194.1| - 0.092 12.1 20.0 0.88 8.9 20.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Syntaxin PF00804.25 gi|292654297|ref|YP_003534194.1| - 0.1 12.3 14.6 0.9 9.2 1.8 2.4 1 1 0 2 2 2 0 Syntaxin HAUS6_N PF14661.6 gi|292654297|ref|YP_003534194.1| - 0.1 12.1 14.5 0.61 9.6 8.8 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Jnk-SapK_ap_N PF09744.9 gi|292654297|ref|YP_003534194.1| - 0.11 12.7 22.2 0.24 11.6 11.1 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 LMBR1 PF04791.16 gi|292654297|ref|YP_003534194.1| - 0.11 11.4 6.8 0.14 11.0 6.8 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2730 PF10805.8 gi|292654297|ref|YP_003534194.1| - 0.11 12.6 9.5 1.2 9.2 1.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) HAUS-augmin3 PF14932.6 gi|292654297|ref|YP_003534194.1| - 0.12 12.0 17.8 0.23 11.0 2.1 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 FAM184 PF15665.5 gi|292654297|ref|YP_003534194.1| - 0.13 12.0 18.1 0.62 9.8 9.6 2.3 2 0 0 2 2 2 0 Family with sequence similarity 184, A and B DUF4763 PF15960.5 gi|292654297|ref|YP_003534194.1| - 0.15 11.3 14.3 0.24 10.7 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) IFT57 PF10498.9 gi|292654297|ref|YP_003534194.1| - 0.16 10.9 16.7 0.29 10.1 1.1 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF2570 PF10828.8 gi|292654297|ref|YP_003534194.1| - 0.17 11.8 17.1 0.19 11.5 11.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Mod_r PF07200.13 gi|292654297|ref|YP_003534194.1| - 0.18 11.9 18.8 1.4 9.0 1.8 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein COG2 PF06148.11 gi|292654297|ref|YP_003534194.1| - 0.22 11.6 17.6 0.27 11.3 2.4 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Not3 PF04065.15 gi|292654297|ref|YP_003534194.1| - 0.23 10.9 16.0 1.3 8.4 6.9 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF4140 PF13600.6 gi|292654297|ref|YP_003534194.1| - 0.23 11.9 20.5 0.73 10.3 3.6 2.7 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HalX PF08663.10 gi|292654297|ref|YP_003534194.1| - 0.26 11.6 19.9 0.11 12.8 4.9 3.2 2 1 0 2 2 2 0 HalX domain DUF948 PF06103.11 gi|292654297|ref|YP_003534194.1| - 0.27 11.5 11.8 0.15 12.3 0.7 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) Muted PF14942.6 gi|292654297|ref|YP_003534194.1| - 0.27 11.6 14.7 2.8 8.3 7.1 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein KASH_CCD PF14662.6 gi|292654297|ref|YP_003534194.1| - 0.27 11.0 28.8 1.2 9.0 4.6 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH SKA2 PF16740.5 gi|292654297|ref|YP_003534194.1| - 0.29 10.9 18.1 0.19 11.6 0.5 2.3 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Laminin_II PF06009.12 gi|292654297|ref|YP_003534194.1| - 0.29 11.1 14.5 0.29 11.1 1.7 2.2 1 1 0 2 2 2 0 Laminin Domain II TBCC_N PF16752.5 gi|292654297|ref|YP_003534194.1| - 0.32 11.5 12.7 0.71 10.3 0.8 2.3 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain DUF4515 PF14988.6 gi|292654297|ref|YP_003534194.1| - 0.32 10.8 20.3 0.29 10.9 3.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Hemagglutinin PF00509.18 gi|292654297|ref|YP_003534194.1| - 0.38 9.1 3.9 0.85 7.9 0.1 2.0 2 0 0 2 2 2 0 Haemagglutinin Spc24 PF08286.11 gi|292654297|ref|YP_003534194.1| - 0.39 11.0 24.2 1.8e+04 -5.5 24.2 2.7 1 1 0 1 1 0 0 Spc24 subunit of Ndc80 Med4 PF10018.9 gi|292654297|ref|YP_003534194.1| - 0.4 10.3 19.7 0.78 9.4 1.6 2.4 2 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nup54 PF13874.6 gi|292654297|ref|YP_003534194.1| - 0.46 10.6 14.2 0.81 9.8 7.0 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 MCU PF04678.13 gi|292654297|ref|YP_003534194.1| - 0.47 10.5 14.0 2.7 8.1 7.6 2.4 1 1 1 2 2 2 0 Mitochondrial calcium uniporter EzrA PF06160.12 gi|292654297|ref|YP_003534194.1| - 0.5 8.5 17.4 0.51 8.5 2.5 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA V_ATPase_I PF01496.19 gi|292654297|ref|YP_003534194.1| - 0.52 8.2 14.2 1 7.2 7.2 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF5320 PF17253.2 gi|292654297|ref|YP_003534194.1| - 0.53 11.4 0.0 0.53 11.4 0.0 3.3 3 0 0 3 3 2 0 Family of unknown function (DUF5320) FAM76 PF16046.5 gi|292654297|ref|YP_003534194.1| - 0.55 9.5 8.6 0.95 8.8 4.1 2.0 2 0 0 2 2 2 0 FAM76 protein ADIP PF11559.8 gi|292654297|ref|YP_003534194.1| - 0.68 10.0 20.6 1.6 8.8 2.0 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Fez1 PF06818.15 gi|292654297|ref|YP_003534194.1| - 0.71 10.3 21.5 2.6 8.5 21.5 1.7 1 1 0 1 1 1 0 Fez1 CorA PF01544.18 gi|292654297|ref|YP_003534194.1| - 0.77 9.0 14.9 6.1 6.1 14.8 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Uds1 PF15456.6 gi|292654297|ref|YP_003534194.1| - 0.85 9.8 14.3 12 6.1 14.3 2.2 1 1 0 1 1 1 0 Up-regulated During Septation TPR_MLP1_2 PF07926.12 gi|292654297|ref|YP_003534194.1| - 0.89 9.6 27.6 0.71 9.9 4.1 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF1515 PF07439.11 gi|292654297|ref|YP_003534194.1| - 0.96 9.5 12.1 0.23 11.5 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) zf-CpG_bind_C PF12269.8 gi|292654297|ref|YP_003534194.1| - 1 9.1 11.3 1.6 8.4 5.4 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain AAA_13 PF13166.6 gi|292654297|ref|YP_003534194.1| - 1.1 7.9 17.7 7.4 5.1 17.7 1.8 1 1 0 1 1 1 0 AAA domain COG6 PF06419.11 gi|292654297|ref|YP_003534194.1| - 1.1 7.4 11.5 1.7 6.7 0.5 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Occludin_ELL PF07303.13 gi|292654297|ref|YP_003534194.1| - 1.2 9.9 14.6 1.9 9.2 0.6 2.7 2 1 1 3 3 3 0 Occludin homology domain CENP-H PF05837.12 gi|292654297|ref|YP_003534194.1| - 1.3 9.5 23.4 2.3 8.7 3.0 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF4446 PF14584.6 gi|292654297|ref|YP_003534194.1| - 1.3 9.0 10.9 6.8 6.7 4.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Atg14 PF10186.9 gi|292654297|ref|YP_003534194.1| - 1.4 7.9 17.3 6.5 5.7 17.3 1.8 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Ax_dynein_light PF10211.9 gi|292654297|ref|YP_003534194.1| - 1.7 8.6 24.5 2 8.3 3.7 2.2 1 1 1 2 2 2 0 Axonemal dynein light chain Allexi_40kDa PF05549.11 gi|292654297|ref|YP_003534194.1| - 1.7 8.1 11.8 2.2 7.7 4.1 2.0 1 1 0 2 2 2 0 Allexivirus 40kDa protein Tektin PF03148.14 gi|292654297|ref|YP_003534194.1| - 1.7 7.3 22.8 0.43 9.3 3.1 2.8 1 1 0 2 2 2 0 Tektin family BCAS2 PF05700.11 gi|292654297|ref|YP_003534194.1| - 2.2 8.0 19.4 1.2 8.8 9.2 2.0 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Cep57_CLD_2 PF14197.6 gi|292654297|ref|YP_003534194.1| - 2.2 8.5 17.9 1 9.5 4.1 2.5 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DivIVA PF05103.13 gi|292654297|ref|YP_003534194.1| - 2.4 8.2 22.9 2.8 8.0 4.3 2.2 2 0 0 2 2 2 0 DivIVA protein Cortex-I_coil PF09304.10 gi|292654297|ref|YP_003534194.1| - 2.5 8.3 15.6 1.6 8.9 6.3 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil HrpB7 PF09486.10 gi|292654297|ref|YP_003534194.1| - 2.6 8.4 23.9 0.28 11.6 13.2 2.2 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) FUSC PF04632.12 gi|292654297|ref|YP_003534194.1| - 2.9 6.3 7.2 4.5 5.7 7.2 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3552 PF12072.8 gi|292654297|ref|YP_003534194.1| - 2.9 7.3 23.4 1.4 8.3 11.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Fungal_TACC PF12709.7 gi|292654297|ref|YP_003534194.1| - 3.1 8.3 19.8 0.2 12.1 3.4 3.0 2 1 1 3 3 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins ATG16 PF08614.11 gi|292654297|ref|YP_003534194.1| - 3.4 7.8 26.6 0.13 12.5 5.1 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Nsp1_C PF05064.13 gi|292654297|ref|YP_003534194.1| - 3.5 7.5 20.1 3.3 7.5 10.2 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region FlxA PF14282.6 gi|292654297|ref|YP_003534194.1| - 3.8 7.6 38.8 1.5 8.9 3.3 2.5 2 1 0 2 2 2 0 FlxA-like protein Syntaxin-6_N PF09177.11 gi|292654297|ref|YP_003534194.1| - 4.5 7.9 18.1 4 8.0 1.8 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal Phage_Mu_Gam PF07352.12 gi|292654297|ref|YP_003534194.1| - 4.7 7.1 16.6 0.48 10.3 5.3 2.6 3 0 0 3 3 2 0 Bacteriophage Mu Gam like protein DUF724 PF05266.14 gi|292654297|ref|YP_003534194.1| - 4.8 7.0 20.0 6.3e+03 -3.2 20.0 2.1 1 1 0 1 1 0 0 Protein of unknown function (DUF724) Nmad5 PF18757.1 gi|292654297|ref|YP_003534194.1| - 5 7.3 10.0 3 8.0 0.5 2.4 1 1 0 2 2 2 0 Nucleotide modification associated domain 5 RasGAP_C PF03836.15 gi|292654297|ref|YP_003534194.1| - 5.1 7.2 14.6 4.9 7.3 5.8 2.2 2 0 0 2 2 2 0 RasGAP C-terminus CCDC106 PF15794.5 gi|292654297|ref|YP_003534194.1| - 5.1 6.7 12.7 5.7 6.6 3.7 2.2 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 106 Paralemmin PF03285.15 gi|292654297|ref|YP_003534194.1| - 5.3 6.5 21.7 2.3 7.7 5.8 2.1 1 1 1 2 2 2 0 Paralemmin Prefoldin_3 PF13758.6 gi|292654297|ref|YP_003534194.1| - 5.6 7.1 14.6 2.5 8.2 7.7 2.6 1 1 1 2 2 2 0 Prefoldin subunit Cob_adeno_trans PF01923.18 gi|292654297|ref|YP_003534194.1| - 5.6 7.1 11.1 4.2 7.5 4.6 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase RPW8 PF05659.11 gi|292654297|ref|YP_003534194.1| - 6.4 6.5 10.1 11 5.6 2.3 2.5 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 UBA_e1_thiolCys PF10585.9 gi|292654297|ref|YP_003534194.1| - 6.7 6.6 8.5 13 5.6 2.9 2.1 2 0 0 2 2 2 0 Ubiquitin-activating enzyme active site Swi5 PF07061.11 gi|292654297|ref|YP_003534194.1| - 6.7 6.9 21.4 0.94 9.6 3.2 3.2 2 1 1 3 3 3 0 Swi5 LCD1 PF09798.9 gi|292654297|ref|YP_003534194.1| - 6.9 5.1 13.0 3 6.3 0.5 2.1 2 0 0 2 2 2 0 DNA damage checkpoint protein YlqD PF11068.8 gi|292654297|ref|YP_003534194.1| - 7 7.0 30.1 4.7 7.6 5.8 2.8 2 1 0 2 2 2 0 YlqD protein JIP_LZII PF16471.5 gi|292654297|ref|YP_003534194.1| - 7.1 6.9 20.2 3 8.1 3.9 3.0 2 1 1 3 3 3 0 JNK-interacting protein leucine zipper II Snapin_Pallidin PF14712.6 gi|292654297|ref|YP_003534194.1| - 7.2 7.1 25.3 5.8 7.4 4.3 2.6 2 1 0 2 2 2 0 Snapin/Pallidin AAA_lid_9 PF17871.1 gi|292654297|ref|YP_003534194.1| - 7.3 6.6 15.5 9.9 6.1 0.9 2.6 2 1 0 2 2 2 0 AAA lid domain XhlA PF10779.9 gi|292654297|ref|YP_003534194.1| - 8 6.8 15.5 9.1 6.6 4.6 2.9 2 1 0 2 2 2 0 Haemolysin XhlA Tho2 PF11262.8 gi|292654297|ref|YP_003534194.1| - 8.1 5.5 11.2 2 7.5 3.6 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 GIT_CC PF16559.5 gi|292654297|ref|YP_003534194.1| - 8.3 6.4 22.6 3.2 7.7 4.5 3.3 3 0 0 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor SRP54 PF00448.22 gi|292654298|ref|YP_003534195.1| - 1.9e-67 226.7 0.5 2.8e-67 226.2 0.5 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|292654298|ref|YP_003534195.1| - 1e-15 57.7 0.8 1e-15 57.7 0.8 1.8 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.20 gi|292654298|ref|YP_003534195.1| - 4.4e-05 23.4 0.0 7.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.23 gi|292654298|ref|YP_003534195.1| - 4.7e-05 23.4 0.2 0.00023 21.2 0.1 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|292654298|ref|YP_003534195.1| - 4.8e-05 23.1 0.2 0.00081 19.1 0.1 2.5 2 0 0 2 2 2 1 Thymidylate kinase AAA_30 PF13604.6 gi|292654298|ref|YP_003534195.1| - 0.0002 21.1 0.3 0.00046 20.0 0.3 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|292654298|ref|YP_003534195.1| - 0.00063 19.1 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|292654298|ref|YP_003534195.1| - 0.001 19.5 0.0 0.001 19.5 0.0 3.0 1 1 1 2 2 1 1 AAA ATPase domain SPX PF03105.19 gi|292654298|ref|YP_003534195.1| - 0.0042 17.1 5.0 0.0058 16.6 5.0 1.2 1 0 0 1 1 1 1 SPX domain KTI12 PF08433.10 gi|292654298|ref|YP_003534195.1| - 0.005 16.3 0.1 0.0099 15.4 0.0 1.5 2 0 0 2 2 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|292654298|ref|YP_003534195.1| - 0.0075 16.5 0.5 0.0075 16.5 0.5 3.0 3 1 0 3 3 2 1 AAA domain AAA_17 PF13207.6 gi|292654298|ref|YP_003534195.1| - 0.0091 16.4 0.1 0.0091 16.4 0.1 2.8 4 0 0 4 4 2 1 AAA domain AAA_19 PF13245.6 gi|292654298|ref|YP_003534195.1| - 0.013 15.8 0.1 0.032 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|292654298|ref|YP_003534195.1| - 0.015 14.9 0.1 0.031 13.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|292654298|ref|YP_003534195.1| - 0.019 14.9 0.3 0.043 13.7 0.3 1.5 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 gi|292654298|ref|YP_003534195.1| - 0.039 14.0 0.0 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|292654298|ref|YP_003534195.1| - 0.04 14.2 0.1 0.12 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain MeaB PF03308.16 gi|292654298|ref|YP_003534195.1| - 0.044 12.8 0.0 0.093 11.7 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ResIII PF04851.15 gi|292654298|ref|YP_003534195.1| - 0.048 13.6 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_31 PF13614.6 gi|292654298|ref|YP_003534195.1| - 0.058 13.3 0.2 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|292654298|ref|YP_003534195.1| - 0.061 13.7 0.5 0.2 12.1 0.1 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|292654298|ref|YP_003534195.1| - 0.063 13.8 0.0 0.19 12.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|292654298|ref|YP_003534195.1| - 0.089 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|292654298|ref|YP_003534195.1| - 0.091 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|292654298|ref|YP_003534195.1| - 0.095 12.9 0.1 0.31 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain LytR_C PF13399.6 gi|292654298|ref|YP_003534195.1| - 0.14 13.2 0.3 0.14 13.2 0.3 2.5 2 1 0 2 2 1 0 LytR cell envelope-related transcriptional attenuator ParA PF10609.9 gi|292654298|ref|YP_003534195.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_23 PF13476.6 gi|292654298|ref|YP_003534195.1| - 0.48 10.9 0.1 0.48 10.9 0.1 2.1 3 0 0 3 3 2 0 AAA domain YtxH PF12732.7 gi|292654298|ref|YP_003534195.1| - 1.2 9.7 6.5 1.4 9.5 1.9 3.0 2 1 0 2 2 2 0 YtxH-like protein LysE PF01810.18 gi|292654299|ref|YP_003534196.1| - 3.7e-34 117.9 8.0 4.5e-34 117.6 8.0 1.1 1 0 0 1 1 1 1 LysE type translocator B277 PF17623.2 gi|292654299|ref|YP_003534196.1| - 0.27 10.3 1.4 4.4 6.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function 2-Hacid_dh_C PF02826.19 gi|292654300|ref|YP_003534197.1| - 8.2e-53 178.4 0.0 1.1e-52 178.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|292654300|ref|YP_003534197.1| - 5.2e-16 58.5 0.0 6.2e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|292654300|ref|YP_003534197.1| - 0.026 14.7 0.0 0.049 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|292654300|ref|YP_003534197.1| - 0.026 15.1 0.1 0.18 12.4 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|292654300|ref|YP_003534197.1| - 0.042 13.2 0.2 0.092 12.1 0.0 1.6 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.20 gi|292654300|ref|YP_003534197.1| - 0.18 11.8 0.5 0.78 9.8 0.1 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase SRP54 PF00448.22 gi|292654301|ref|YP_003534198.1| - 6.5e-64 215.2 0.1 1.3e-63 214.2 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|292654301|ref|YP_003534198.1| - 6.8e-29 100.4 5.0 6.8e-29 100.4 5.0 2.9 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|292654301|ref|YP_003534198.1| - 1.7e-18 66.6 0.3 1.7e-18 66.6 0.3 3.1 4 0 0 4 4 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|292654301|ref|YP_003534198.1| - 6.7e-05 22.9 0.0 0.00017 21.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|292654301|ref|YP_003534198.1| - 0.0059 16.2 0.3 0.036 13.7 0.3 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 gi|292654301|ref|YP_003534198.1| - 0.0067 15.7 0.0 0.0067 15.7 0.0 3.3 4 0 0 4 4 4 1 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|292654301|ref|YP_003534198.1| - 0.0074 15.6 0.0 0.028 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin APS_kinase PF01583.20 gi|292654301|ref|YP_003534198.1| - 0.029 14.3 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|292654301|ref|YP_003534198.1| - 0.036 13.8 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|292654301|ref|YP_003534198.1| - 0.04 14.1 0.0 0.097 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|292654301|ref|YP_003534198.1| - 0.046 14.3 0.0 0.25 11.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain DCX PF03607.17 gi|292654301|ref|YP_003534198.1| - 0.048 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Doublecortin SMC_N PF02463.19 gi|292654301|ref|YP_003534198.1| - 0.052 13.0 0.0 0.097 12.1 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|292654301|ref|YP_003534198.1| - 0.07 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_31 PF13614.6 gi|292654301|ref|YP_003534198.1| - 0.071 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|292654301|ref|YP_003534198.1| - 0.084 12.9 0.3 0.37 10.8 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MobB PF03205.14 gi|292654301|ref|YP_003534198.1| - 0.095 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|292654301|ref|YP_003534198.1| - 0.17 11.9 0.3 0.86 9.7 0.3 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase SSXT PF05030.12 gi|292654301|ref|YP_003534198.1| - 3.6 7.3 5.4 8.4 6.1 5.4 1.6 1 0 0 1 1 1 0 SSXT protein (N-terminal region) T3SS_basalb_I PF17001.5 gi|292654301|ref|YP_003534198.1| - 7.5 7.2 13.0 0.53 10.9 1.4 3.3 3 0 0 3 3 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI MgtE PF01769.16 gi|292654302|ref|YP_003534199.1| - 9.9e-21 74.4 7.2 9.9e-21 74.4 7.2 1.7 2 0 0 2 2 2 1 Divalent cation transporter CitMHS PF03600.16 gi|292654302|ref|YP_003534199.1| - 0.39 9.9 15.9 0.61 9.2 15.9 1.5 1 1 0 1 1 1 0 Citrate transporter Phage_holin_3_7 PF05449.11 gi|292654302|ref|YP_003534199.1| - 1.8 8.6 9.6 3.2 7.8 0.9 2.6 2 0 0 2 2 2 0 Putative 3TM holin, Phage_holin_3 DUF3487 PF11990.8 gi|292654302|ref|YP_003534199.1| - 2.4 8.0 14.1 0.43 10.5 4.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) MgtE PF01769.16 gi|292654303|ref|YP_003534200.1| - 2e-21 76.6 10.3 2e-21 76.6 10.3 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF677 PF05055.12 gi|292654303|ref|YP_003534200.1| - 0.24 10.3 0.2 0.33 9.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) VirB8 PF04335.13 gi|292654304|ref|YP_003534201.1| - 0.0047 16.8 0.5 0.0047 16.8 0.5 2.8 2 1 0 3 3 3 1 VirB8 protein RNA_binding PF01877.17 gi|292654305|ref|YP_003534202.1| - 2.1e-09 37.7 0.4 6.8e-08 32.8 0.4 2.1 1 1 0 1 1 1 1 RNA binding DUF4878 PF12870.7 gi|292654305|ref|YP_003534202.1| - 0.14 12.5 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) AAA_17 PF13207.6 gi|292654306|ref|YP_003534203.1| - 1.3e-20 74.3 0.1 2.1e-20 73.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|292654306|ref|YP_003534203.1| - 2.8e-14 53.8 0.1 3.5e-14 53.5 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292654306|ref|YP_003534203.1| - 4.5e-07 30.1 0.0 8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|292654306|ref|YP_003534203.1| - 0.00022 21.0 0.1 0.054 13.2 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase ADK PF00406.22 gi|292654306|ref|YP_003534203.1| - 0.00052 20.2 0.1 0.00075 19.6 0.1 1.3 1 1 0 1 1 1 1 Adenylate kinase TrkA_C PF02080.21 gi|292654306|ref|YP_003534203.1| - 0.039 13.8 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 TrkA-C domain YccF PF03733.13 gi|292654307|ref|YP_003534204.1| - 4.2e-11 43.4 22.2 2.4e-05 25.0 8.3 2.1 2 0 0 2 2 2 2 Inner membrane component domain COPI_assoc PF08507.10 gi|292654307|ref|YP_003534204.1| - 0.14 12.2 3.8 2.7 8.0 1.2 2.1 2 0 0 2 2 2 0 COPI associated protein DUF1145 PF06611.12 gi|292654308|ref|YP_003534205.1| - 0.071 13.1 3.3 0.14 12.2 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1145) CoA_binding_3 PF13727.6 gi|292654308|ref|YP_003534205.1| - 0.18 11.8 2.1 0.22 11.5 2.1 1.1 1 0 0 1 1 1 0 CoA-binding domain DUF2516 PF10724.9 gi|292654308|ref|YP_003534205.1| - 0.55 10.6 7.6 7.1 7.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2516) DUF5353 PF17304.2 gi|292654308|ref|YP_003534205.1| - 0.88 9.4 5.6 0.4 10.4 2.7 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5353) CDP-OH_P_transf PF01066.21 gi|292654308|ref|YP_003534205.1| - 8.7 7.2 7.8 3e+02 2.3 7.8 2.3 1 1 0 1 1 1 0 CDP-alcohol phosphatidyltransferase DUF2724 PF10893.8 gi|292654309|ref|YP_003534206.1| - 0.025 14.4 0.0 0.028 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) PGM_PMM_II PF02879.16 gi|292654310|ref|YP_003534207.1| - 0.099 13.3 0.3 0.29 11.8 0.3 1.8 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Cpn60_TCP1 PF00118.24 gi|292654311|ref|YP_003534208.1| - 1.2e-178 594.8 14.7 1.3e-178 594.6 14.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.16 gi|292654311|ref|YP_003534208.1| - 0.032 14.8 1.3 9.4 6.9 0.0 2.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PepSY PF03413.19 gi|292654311|ref|YP_003534208.1| - 0.72 10.5 3.3 5.4 7.7 0.0 3.2 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain KH_1 PF00013.29 gi|292654312|ref|YP_003534209.1| - 2.7e-13 49.5 1.5 3.4e-07 30.0 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|292654312|ref|YP_003534209.1| - 2.1e-05 24.3 1.7 0.005 16.6 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|292654312|ref|YP_003534209.1| - 0.018 14.9 3.8 0.89 9.5 0.3 3.0 3 1 0 3 3 3 0 KH domain RIO1 PF01163.22 gi|292654313|ref|YP_003534210.1| - 4.5e-62 209.0 0.7 5.4e-62 208.7 0.0 1.4 2 0 0 2 2 2 1 RIO1 family Kdo PF06293.14 gi|292654313|ref|YP_003534210.1| - 1.1e-08 34.6 0.2 3.4e-08 33.1 0.2 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|292654313|ref|YP_003534210.1| - 1.4e-07 31.7 2.3 1.2e-05 25.4 0.1 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|292654313|ref|YP_003534210.1| - 0.00015 21.2 0.0 0.00027 20.4 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|292654313|ref|YP_003534210.1| - 0.00055 18.8 0.0 0.0007 18.5 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase WaaY PF06176.11 gi|292654313|ref|YP_003534210.1| - 0.0097 15.5 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) eIF-1a PF01176.19 gi|292654314|ref|YP_003534211.1| - 2.5e-23 81.7 0.7 3.2e-23 81.3 0.7 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF726 PF05277.12 gi|292654315|ref|YP_003534212.1| - 0.98 8.3 6.5 1 8.2 6.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Abhydrolase_3 PF07859.13 gi|292654316|ref|YP_003534213.1| - 1.7e-22 80.3 3.8 5.1e-22 78.8 3.8 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|292654316|ref|YP_003534213.1| - 2.3e-18 66.4 0.0 3.1e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.28 gi|292654316|ref|YP_003534213.1| - 4.1e-12 45.8 0.0 1.1e-11 44.3 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Hydrolase_4 PF12146.8 gi|292654316|ref|YP_003534213.1| - 6.5e-07 28.9 0.2 0.0021 17.4 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|292654316|ref|YP_003534213.1| - 1.3e-05 25.0 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S15 PF02129.18 gi|292654316|ref|YP_003534213.1| - 2.3e-05 24.2 0.0 0.0056 16.3 0.0 2.3 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|292654316|ref|YP_003534213.1| - 0.00089 19.0 0.3 0.19 11.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|292654316|ref|YP_003534213.1| - 0.0012 18.7 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|292654316|ref|YP_003534213.1| - 0.0027 17.3 0.2 0.022 14.3 0.2 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.9 gi|292654316|ref|YP_003534213.1| - 0.0036 16.8 3.9 0.026 14.0 4.2 2.1 2 1 0 2 2 2 1 Esterase PHB depolymerase Abhydrolase_6 PF12697.7 gi|292654316|ref|YP_003534213.1| - 0.0048 17.5 15.0 0.026 15.1 14.9 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|292654316|ref|YP_003534213.1| - 0.005 16.9 0.0 0.0099 16.0 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.20 gi|292654316|ref|YP_003534213.1| - 0.0063 16.2 0.1 0.018 14.7 0.0 1.6 2 0 0 2 2 2 1 Putative esterase Chlorophyllase2 PF12740.7 gi|292654316|ref|YP_003534213.1| - 0.0081 15.1 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme BAAT_C PF08840.11 gi|292654316|ref|YP_003534213.1| - 0.017 15.1 0.0 0.16 11.9 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Chlorophyllase PF07224.11 gi|292654316|ref|YP_003534213.1| - 0.037 13.0 0.0 0.05 12.6 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase Lipase_3 PF01764.25 gi|292654316|ref|YP_003534213.1| - 0.062 13.2 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 Lipase (class 3) Lipase PF00151.19 gi|292654316|ref|YP_003534213.1| - 0.071 12.4 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Lipase tRNA-synt_1b PF00579.25 gi|292654317|ref|YP_003534214.1| - 9.3e-49 166.3 0.0 1.3e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|292654317|ref|YP_003534214.1| - 0.028 13.4 0.0 5.3 5.9 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) PLDc_N PF13396.6 gi|292654318|ref|YP_003534215.1| - 9.9e-05 22.2 0.4 9.9e-05 22.2 0.4 3.0 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal DUF3040 PF11239.8 gi|292654318|ref|YP_003534215.1| - 0.61 10.4 9.0 2.4 8.5 4.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2207 PF09972.9 gi|292654318|ref|YP_003534215.1| - 2.6 6.7 4.2 3.6 6.2 4.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF805 PF05656.14 gi|292654318|ref|YP_003534215.1| - 3.8 8.0 6.6 5.5 7.4 6.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF460 PF04312.13 gi|292654319|ref|YP_003534216.1| - 1e-47 161.3 0.6 2.6e-47 160.0 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|292654319|ref|YP_003534216.1| - 1.7e-05 25.1 2.3 1.7e-05 25.1 2.3 2.9 3 1 0 3 3 1 1 Actinobacteria/chloroflexi VLRF1 release factor DUF812 PF05667.11 gi|292654319|ref|YP_003534216.1| - 0.00051 19.1 5.2 0.00051 19.1 5.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF812) TACC_C PF05010.14 gi|292654319|ref|YP_003534216.1| - 0.00061 19.6 6.7 0.00061 19.6 6.7 2.5 2 0 0 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Atg14 PF10186.9 gi|292654319|ref|YP_003534216.1| - 0.00075 18.7 3.3 0.00075 18.7 3.3 1.5 2 0 0 2 2 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 FAM76 PF16046.5 gi|292654319|ref|YP_003534216.1| - 0.0035 16.8 2.1 0.0035 16.8 2.1 1.7 2 0 0 2 2 2 1 FAM76 protein DUF641 PF04859.12 gi|292654319|ref|YP_003534216.1| - 0.0055 17.0 4.4 0.0055 17.0 4.4 3.0 3 1 1 4 4 4 1 Plant protein of unknown function (DUF641) Laminin_II PF06009.12 gi|292654319|ref|YP_003534216.1| - 0.015 15.3 3.9 0.053 13.5 3.9 1.9 1 0 0 1 1 1 0 Laminin Domain II Exonuc_VII_L PF02601.15 gi|292654319|ref|YP_003534216.1| - 0.015 14.9 0.2 0.035 13.7 0.2 1.7 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|292654319|ref|YP_003534216.1| - 0.018 15.3 4.8 0.018 15.3 4.8 2.8 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) Laminin_I PF06008.14 gi|292654319|ref|YP_003534216.1| - 0.055 13.2 9.1 0.14 11.9 9.1 1.6 1 0 0 1 1 1 0 Laminin Domain I V_ATPase_I PF01496.19 gi|292654319|ref|YP_003534216.1| - 0.093 10.6 2.5 0.18 9.7 2.5 1.5 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family bZIP_1 PF00170.21 gi|292654319|ref|YP_003534216.1| - 0.094 12.8 15.6 0.28 11.3 1.9 2.6 2 0 0 2 2 2 0 bZIP transcription factor SlyX PF04102.12 gi|292654319|ref|YP_003534216.1| - 0.099 13.3 5.3 8.2 7.1 0.4 3.1 1 1 1 2 2 2 0 SlyX LPP PF04728.13 gi|292654319|ref|YP_003534216.1| - 0.12 12.8 0.5 15 6.1 0.0 2.9 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DUF1664 PF07889.12 gi|292654319|ref|YP_003534216.1| - 0.4 10.7 3.4 1.9 8.5 3.4 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF148 PF02520.17 gi|292654319|ref|YP_003534216.1| - 0.58 10.3 4.1 12 6.0 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function DUF148 FapA PF03961.13 gi|292654319|ref|YP_003534216.1| - 0.73 8.4 4.9 1.5 7.3 4.9 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A Fez1 PF06818.15 gi|292654319|ref|YP_003534216.1| - 0.98 9.8 16.6 0.058 13.8 9.3 2.5 3 0 0 3 3 3 0 Fez1 BLOC1_2 PF10046.9 gi|292654319|ref|YP_003534216.1| - 2 8.7 7.2 13 6.2 0.2 2.9 2 1 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4407 PF14362.6 gi|292654319|ref|YP_003534216.1| - 3.6 6.8 9.8 0.22 10.9 3.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) TMF_DNA_bd PF12329.8 gi|292654319|ref|YP_003534216.1| - 3.8 7.6 26.2 0.025 14.6 14.7 3.0 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF3450 PF11932.8 gi|292654319|ref|YP_003534216.1| - 6.3 6.0 14.8 4.5 6.5 1.8 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) STAT_alpha PF01017.20 gi|292654319|ref|YP_003534216.1| - 7.7 6.4 11.9 0.11 12.4 3.9 1.9 3 0 0 3 3 3 0 STAT protein, all-alpha domain Band_7 PF01145.25 gi|292654320|ref|YP_003534217.1| - 2.2e-28 99.5 4.3 3e-28 99.0 4.3 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|292654320|ref|YP_003534217.1| - 0.0052 16.5 0.1 0.0088 15.8 0.1 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF2256 PF10013.9 gi|292654321|ref|YP_003534218.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) PhzC-PhzF PF02567.16 gi|292654322|ref|YP_003534219.1| - 6.4e-58 196.5 0.0 7.1e-58 196.3 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|292654322|ref|YP_003534219.1| - 0.0022 18.2 0.1 0.038 14.2 0.0 2.4 2 1 0 2 2 2 1 Diaminopimelate epimerase Chlorophyllase PF07224.11 gi|292654322|ref|YP_003534219.1| - 0.18 10.8 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase Lactamase_B_2 PF12706.7 gi|292654323|ref|YP_003534220.1| - 1.6e-21 76.7 1.7 4.2e-19 68.9 1.7 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292654323|ref|YP_003534220.1| - 7.2e-14 52.2 7.2 3e-12 46.9 7.2 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|292654323|ref|YP_003534220.1| - 0.00011 21.8 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease AAA PF00004.29 gi|292654324|ref|YP_003534221.1| - 5.1e-12 46.3 0.0 1.2e-11 45.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|292654324|ref|YP_003534221.1| - 3.1e-11 43.3 0.0 4.7e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|292654324|ref|YP_003534221.1| - 4.8e-08 33.3 0.1 1.1e-07 32.1 0.1 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.6 gi|292654324|ref|YP_003534221.1| - 9.9e-08 32.3 0.0 2.6e-07 31.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|292654324|ref|YP_003534221.1| - 3.5e-07 30.8 0.5 1.1e-06 29.1 0.0 2.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|292654324|ref|YP_003534221.1| - 4.6e-05 23.5 0.0 0.00012 22.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|292654324|ref|YP_003534221.1| - 0.00028 20.6 0.0 0.0071 16.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|292654324|ref|YP_003534221.1| - 0.00032 21.2 0.0 0.00077 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|292654324|ref|YP_003534221.1| - 0.00042 20.1 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|292654324|ref|YP_003534221.1| - 0.00051 20.4 0.2 0.033 14.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|292654324|ref|YP_003534221.1| - 0.00055 19.9 0.6 0.004 17.2 0.2 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|292654324|ref|YP_003534221.1| - 0.00074 19.4 0.0 0.0018 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|292654324|ref|YP_003534221.1| - 0.0018 18.1 0.0 0.007 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|292654324|ref|YP_003534221.1| - 0.002 18.1 0.0 0.0078 16.2 0.0 1.9 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.17 gi|292654324|ref|YP_003534221.1| - 0.0025 17.6 0.0 0.0095 15.7 0.0 1.9 1 1 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|292654324|ref|YP_003534221.1| - 0.019 14.9 0.0 3.4 7.5 0.0 2.3 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 gi|292654324|ref|YP_003534221.1| - 0.019 14.0 0.0 0.056 12.5 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|292654324|ref|YP_003534221.1| - 0.032 13.6 0.0 0.09 12.2 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|292654324|ref|YP_003534221.1| - 0.036 14.2 0.1 0.066 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|292654324|ref|YP_003534221.1| - 0.046 13.0 0.0 0.063 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|292654324|ref|YP_003534221.1| - 0.048 13.6 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|292654324|ref|YP_003534221.1| - 0.07 13.5 0.0 0.29 11.5 0.0 2.0 2 0 0 2 2 2 0 RNA helicase DNA_pol3_delta PF06144.13 gi|292654324|ref|YP_003534221.1| - 0.083 12.7 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DEAD PF00270.29 gi|292654324|ref|YP_003534221.1| - 0.093 12.5 0.0 14 5.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase Viral_helicase1 PF01443.18 gi|292654324|ref|YP_003534221.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.14 gi|292654324|ref|YP_003534221.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) ABC_tran PF00005.27 gi|292654324|ref|YP_003534221.1| - 0.13 12.8 0.0 0.25 11.8 0.0 1.8 1 1 0 1 1 1 0 ABC transporter PS_Dcarbxylase PF02666.15 gi|292654325|ref|YP_003534222.1| - 8.9e-31 107.0 0.3 1.8e-28 99.5 0.3 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|292654325|ref|YP_003534222.1| - 0.0054 16.7 0.6 8.6 6.4 0.2 3.3 3 1 0 3 3 3 2 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|292654325|ref|YP_003534222.1| - 0.0089 15.8 0.3 13 5.7 0.1 3.5 4 0 0 4 4 4 2 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 gi|292654325|ref|YP_003534222.1| - 0.068 12.9 0.1 10 5.9 0.0 3.1 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Urease_beta PF00699.20 gi|292654326|ref|YP_003534223.1| - 3.3e-46 155.3 0.1 4.1e-46 155.0 0.1 1.1 1 0 0 1 1 1 1 Urease beta subunit Amidohydro_1 PF01979.20 gi|292654327|ref|YP_003534224.1| - 1.3e-64 218.7 0.3 1.7e-64 218.3 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|292654327|ref|YP_003534224.1| - 3.9e-47 159.5 2.6 8.7e-47 158.4 2.6 1.6 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|292654327|ref|YP_003534224.1| - 2e-07 30.9 3.3 2.7e-06 27.1 0.3 2.7 1 1 1 2 2 2 2 Amidohydrolase family Urease_gamma PF00547.18 gi|292654328|ref|YP_003534225.1| - 7.1e-43 144.9 0.0 8.8e-43 144.7 0.0 1.1 1 0 0 1 1 1 1 Urease, gamma subunit cobW PF02492.19 gi|292654329|ref|YP_003534226.1| - 2.9e-32 111.7 0.0 3.6e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|292654329|ref|YP_003534226.1| - 2.2e-09 37.3 0.0 3.4e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|292654329|ref|YP_003534226.1| - 9.9e-09 34.6 0.8 6.4e-08 31.9 0.8 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|292654329|ref|YP_003534226.1| - 0.0017 18.9 0.0 0.0031 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|292654329|ref|YP_003534226.1| - 0.0065 16.4 0.0 2.3 8.1 0.0 2.5 3 0 0 3 3 3 1 RsgA GTPase TrwB_AAD_bind PF10412.9 gi|292654329|ref|YP_003534226.1| - 0.0079 15.1 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|292654329|ref|YP_003534226.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|292654329|ref|YP_003534226.1| - 0.015 15.2 0.1 0.026 14.5 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.6 gi|292654329|ref|YP_003534226.1| - 0.025 15.0 0.0 0.031 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain LpxK PF02606.14 gi|292654329|ref|YP_003534226.1| - 0.032 13.3 0.2 0.052 12.6 0.2 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ABC_tran PF00005.27 gi|292654329|ref|YP_003534226.1| - 0.071 13.6 0.0 0.097 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter SRP54 PF00448.22 gi|292654329|ref|YP_003534226.1| - 0.077 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|292654329|ref|YP_003534226.1| - 0.081 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.17 gi|292654329|ref|YP_003534226.1| - 0.094 12.5 0.0 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_26 PF13500.6 gi|292654329|ref|YP_003534226.1| - 0.14 12.0 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|292654329|ref|YP_003534226.1| - 0.14 11.4 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain ATPase_2 PF01637.18 gi|292654329|ref|YP_003534226.1| - 0.24 11.3 0.0 0.36 10.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea UreD PF01774.17 gi|292654330|ref|YP_003534227.1| - 1.4e-47 162.3 0.7 1.7e-47 162.1 0.7 1.1 1 0 0 1 1 1 1 UreD urease accessory protein DUF4823 PF16105.5 gi|292654330|ref|YP_003534227.1| - 0.031 14.2 0.0 0.83 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4823) UreE_N PF02814.15 gi|292654331|ref|YP_003534228.1| - 5e-10 38.8 7.7 5e-10 38.8 7.7 1.8 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.12 gi|292654331|ref|YP_003534228.1| - 0.038 14.5 44.2 1.3e+04 -3.2 44.2 3.1 1 1 0 1 1 1 0 UreE urease accessory protein, C-terminal domain UreF PF01730.16 gi|292654332|ref|YP_003534229.1| - 1.6e-33 116.1 3.1 2.1e-33 115.7 3.1 1.1 1 0 0 1 1 1 1 UreF PDE8 PF08629.10 gi|292654333|ref|YP_003534230.1| - 0.75 9.8 0.0 0.75 9.8 0.0 2.9 2 1 1 3 3 3 0 PDE8 phosphodiesterase DUF3087 PF11286.8 gi|292654334|ref|YP_003534231.1| - 0.057 12.9 0.6 0.065 12.7 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) DUF202 PF02656.15 gi|292654334|ref|YP_003534231.1| - 0.13 12.7 1.5 0.15 12.5 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF3899 PF13038.6 gi|292654334|ref|YP_003534231.1| - 1 9.9 4.1 9.1 6.9 4.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3899) UPF0020 PF01170.18 gi|292654335|ref|YP_003534232.1| - 4.5e-24 85.2 0.2 3e-23 82.6 0.1 2.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|292654335|ref|YP_003534232.1| - 4.6e-09 36.9 0.1 1.2e-08 35.5 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292654335|ref|YP_003534232.1| - 2.2e-07 31.4 0.0 5.7e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|292654335|ref|YP_003534232.1| - 9.1e-07 29.1 0.0 1.7e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|292654335|ref|YP_003534232.1| - 5.5e-06 26.2 0.0 7.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292654335|ref|YP_003534232.1| - 0.00065 19.6 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|292654335|ref|YP_003534232.1| - 0.0015 18.2 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|292654335|ref|YP_003534232.1| - 0.013 14.9 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family AviRa PF11599.8 gi|292654335|ref|YP_003534232.1| - 0.022 14.2 0.0 0.12 11.9 0.0 1.9 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|292654335|ref|YP_003534232.1| - 0.028 14.0 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|292654335|ref|YP_003534232.1| - 0.16 11.2 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase DUF2157 PF09925.9 gi|292654336|ref|YP_003534233.1| - 0.34 10.7 4.0 0.096 12.5 1.1 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) TBP PF00352.21 gi|292654337|ref|YP_003534234.1| - 1.2e-56 188.6 0.0 6.1e-28 96.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|292654337|ref|YP_003534234.1| - 9e-05 22.7 0.0 0.04 14.2 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|292654337|ref|YP_003534234.1| - 0.00044 20.3 0.0 0.77 9.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|292654337|ref|YP_003534234.1| - 0.0038 17.2 0.0 0.29 11.2 0.0 2.1 1 1 1 2 2 2 2 DUF218 domain DUF4260 PF14079.6 gi|292654338|ref|YP_003534235.1| - 0.016 15.1 2.7 0.016 15.1 2.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) Myc_target_1 PF15179.6 gi|292654338|ref|YP_003534235.1| - 0.48 10.3 1.2 0.74 9.7 1.2 1.2 1 0 0 1 1 1 0 Myc target protein 1 Yip1 PF04893.17 gi|292654338|ref|YP_003534235.1| - 1.6 8.4 18.3 0.71 9.6 0.5 2.0 1 1 1 2 2 2 0 Yip1 domain TraG_N PF07916.11 gi|292654338|ref|YP_003534235.1| - 4.3 6.1 8.9 0.32 9.8 3.9 1.5 2 0 0 2 2 2 0 TraG-like protein, N-terminal region CPBP PF02517.16 gi|292654339|ref|YP_003534236.1| - 8.2e-14 51.7 2.6 8.2e-14 51.7 2.6 3.3 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease HisG PF01634.18 gi|292654340|ref|YP_003534237.1| - 5.2e-49 166.3 0.2 7.1e-49 165.8 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|292654340|ref|YP_003534237.1| - 4.5e-28 97.2 0.1 1e-27 96.1 0.1 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|292654340|ref|YP_003534237.1| - 0.00017 21.6 0.0 0.0074 16.2 0.1 2.6 2 1 0 2 2 2 1 NMT1/THI5 like YjcB PF15940.5 gi|292654341|ref|YP_003534238.1| - 0.51 10.5 2.8 0.28 11.4 0.4 1.8 2 0 0 2 2 2 0 Family of unknown function Tetraspanin PF00335.20 gi|292654341|ref|YP_003534238.1| - 0.98 9.1 5.2 3.3 7.4 5.1 2.1 1 1 0 1 1 1 0 Tetraspanin family HTH_24 PF13412.6 gi|292654342|ref|YP_003534239.1| - 2e-12 46.5 0.0 1.5e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292654342|ref|YP_003534239.1| - 4.7e-11 42.4 1.7 3.7e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|292654342|ref|YP_003534239.1| - 3.5e-08 33.4 6.3 0.00086 19.3 1.4 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654342|ref|YP_003534239.1| - 3.5e-06 26.8 0.0 0.042 13.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|292654342|ref|YP_003534239.1| - 3.9e-06 26.7 0.0 0.033 14.1 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|292654342|ref|YP_003534239.1| - 7e-06 25.8 0.0 0.0005 19.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292654342|ref|YP_003534239.1| - 1.1e-05 25.2 0.1 0.017 14.9 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain BLACT_WH PF17778.1 gi|292654342|ref|YP_003534239.1| - 0.0096 15.9 0.5 1.4 8.9 0.1 2.6 3 0 0 3 3 3 1 Beta-lactamase associated winged helix domain DprA_WH PF17782.1 gi|292654342|ref|YP_003534239.1| - 0.012 15.7 0.8 0.063 13.4 0.0 2.4 2 1 0 2 2 2 0 DprA winged helix domain HTH_AsnC-type PF13404.6 gi|292654342|ref|YP_003534239.1| - 0.029 14.2 0.3 5.3 7.0 0.1 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|292654342|ref|YP_003534239.1| - 0.038 13.8 0.0 0.5 10.2 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Penicillinase_R PF03965.16 gi|292654342|ref|YP_003534239.1| - 0.085 13.2 0.0 2.4 8.5 0.0 2.2 1 1 1 2 2 2 0 Penicillinase repressor 7TMR-DISM_7TM PF07695.11 gi|292654343|ref|YP_003534240.1| - 0.0031 17.4 2.6 0.0041 17.0 2.6 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF2534 PF10749.9 gi|292654343|ref|YP_003534240.1| - 0.17 12.1 1.0 0.4 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2534) DoxX_3 PF13781.6 gi|292654343|ref|YP_003534240.1| - 0.43 11.2 8.7 0.56 10.9 8.0 1.7 1 1 0 1 1 1 0 DoxX-like family Amidohydro_1 PF01979.20 gi|292654344|ref|YP_003534241.1| - 9.8e-68 229.0 4.4 1.1e-67 228.8 4.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|292654344|ref|YP_003534241.1| - 6e-23 82.1 19.8 3.7e-18 66.3 15.2 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|292654344|ref|YP_003534241.1| - 2e-06 27.4 0.0 3.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Radical_SAM PF04055.21 gi|292654344|ref|YP_003534241.1| - 1.3 9.3 3.5 5.4 7.4 3.5 2.0 1 1 0 1 1 1 0 Radical SAM superfamily HTH_IclR PF09339.10 gi|292654345|ref|YP_003534242.1| - 0.00033 20.4 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|292654345|ref|YP_003534242.1| - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|292654345|ref|YP_003534242.1| - 0.0025 17.8 0.2 0.004 17.2 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292654345|ref|YP_003534242.1| - 0.036 14.0 0.1 0.091 12.7 0.0 1.6 2 0 0 2 2 2 0 HTH domain DUF4403 PF14356.6 gi|292654345|ref|YP_003534242.1| - 0.2 10.3 0.0 0.22 10.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4403) AdoHcyase_NAD PF00670.21 gi|292654346|ref|YP_003534243.1| - 2e-49 167.8 0.7 3.3e-49 167.1 0.3 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AdoHcyase PF05221.17 gi|292654346|ref|YP_003534243.1| - 3.9e-49 167.4 0.0 6e-25 88.0 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase 2-Hacid_dh_C PF02826.19 gi|292654346|ref|YP_003534243.1| - 5.7e-10 38.8 0.1 1e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|292654346|ref|YP_003534243.1| - 7.8e-06 25.6 0.7 1.4e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|292654346|ref|YP_003534243.1| - 0.013 15.8 0.1 0.031 14.5 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain UPF0180 PF03698.13 gi|292654346|ref|YP_003534243.1| - 0.13 12.5 0.2 1.1 9.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Multi_Drug_Res PF00893.19 gi|292654347|ref|YP_003534244.1| - 1.4e-25 89.8 3.1 1.8e-25 89.4 3.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|292654347|ref|YP_003534244.1| - 0.043 14.0 7.3 0.054 13.7 7.3 1.3 1 0 0 1 1 1 0 EamA-like transporter family TrmB PF01978.19 gi|292654348|ref|YP_003534245.1| - 1.4e-18 66.5 0.0 3.4e-18 65.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Hjc PF01870.18 gi|292654349|ref|YP_003534246.1| - 3e-31 107.3 0.0 3.7e-31 107.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.21 gi|292654349|ref|YP_003534246.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.17 gi|292654350|ref|YP_003534247.1| - 2.8e-05 23.7 0.0 4.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF5455 PF17537.2 gi|292654351|ref|YP_003534248.1| - 0.0071 16.7 2.4 0.0071 16.7 2.4 1.9 1 1 1 2 2 2 1 Family of unknown function (DUF5455) DUF2275 PF10039.9 gi|292654351|ref|YP_003534248.1| - 0.19 11.8 1.4 0.21 11.7 1.4 1.2 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2275) DNA_primase_lrg PF04104.14 gi|292654352|ref|YP_003534249.1| - 5.2e-19 68.7 0.0 2e-18 66.8 0.0 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF4651 PF15513.6 gi|292654352|ref|YP_003534249.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) Mg_chelatase PF01078.21 gi|292654353|ref|YP_003534250.1| - 0.23 10.8 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PCNA_N PF00705.18 gi|292654354|ref|YP_003534251.1| - 1.3e-09 37.8 0.1 4.8e-09 36.0 0.1 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|292654354|ref|YP_003534251.1| - 1.4e-08 35.0 0.0 4.1e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain LMWPc PF01451.21 gi|292654355|ref|YP_003534252.1| - 6.8e-31 107.6 0.0 8.5e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase AA_permease_2 PF13520.6 gi|292654356|ref|YP_003534253.1| - 7.4e-42 143.7 41.1 1e-41 143.2 41.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|292654356|ref|YP_003534253.1| - 1.2e-34 119.8 34.9 1.6e-34 119.4 34.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|292654356|ref|YP_003534253.1| - 9.9e-12 45.6 17.6 1.8e-09 38.2 3.9 3.3 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|292654356|ref|YP_003534253.1| - 0.0088 16.1 1.7 0.0088 16.1 1.7 2.4 2 0 0 2 2 2 1 C-terminus of AA_permease Phage_HK97_TLTM PF06120.11 gi|292654356|ref|YP_003534253.1| - 0.41 9.8 3.9 0.17 11.0 1.2 1.7 2 0 0 2 2 2 0 Tail length tape measure protein Spore_permease PF03845.13 gi|292654356|ref|YP_003534253.1| - 0.51 9.1 16.8 0.11 11.4 11.3 2.0 2 0 0 2 2 2 0 Spore germination protein HSA PF07529.13 gi|292654357|ref|YP_003534254.1| - 0.0022 18.3 0.8 0.0028 17.9 0.8 1.2 1 1 0 1 1 1 1 HSA HTH_AsnC-type PF13404.6 gi|292654358|ref|YP_003534255.1| - 4.1e-11 42.5 0.7 4.1e-11 42.5 0.7 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrkA_C PF02080.21 gi|292654358|ref|YP_003534255.1| - 1.3e-10 41.0 0.7 2.7e-10 39.9 0.7 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|292654358|ref|YP_003534255.1| - 2.5e-10 39.7 0.3 4.4e-10 38.9 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|292654358|ref|YP_003534255.1| - 3.8e-07 30.0 0.1 8.6e-07 28.8 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|292654358|ref|YP_003534255.1| - 1.3e-05 24.9 0.2 3.8e-05 23.5 0.2 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292654358|ref|YP_003534255.1| - 1.3e-05 25.1 0.7 2.9e-05 24.0 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654358|ref|YP_003534255.1| - 0.00045 20.0 0.0 0.00073 19.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|292654358|ref|YP_003534255.1| - 0.0041 16.8 0.0 0.0088 15.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|292654358|ref|YP_003534255.1| - 0.021 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|292654358|ref|YP_003534255.1| - 0.023 14.6 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 gi|292654358|ref|YP_003534255.1| - 0.036 13.7 0.1 0.08 12.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292654358|ref|YP_003534255.1| - 0.051 13.4 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_CodY PF08222.11 gi|292654358|ref|YP_003534255.1| - 0.054 13.0 0.5 0.13 11.9 0.5 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain TrmB PF01978.19 gi|292654358|ref|YP_003534255.1| - 0.076 12.9 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FtsJ PF01728.19 gi|292654359|ref|YP_003534256.1| - 5.5e-55 186.2 0.0 6.7e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|292654359|ref|YP_003534256.1| - 1.5e-12 47.3 0.3 2.9e-12 46.4 0.3 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|292654359|ref|YP_003534256.1| - 0.00024 20.9 0.0 0.002 17.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292654359|ref|YP_003534256.1| - 0.0025 17.7 0.0 0.0091 15.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain NSP16 PF06460.12 gi|292654359|ref|YP_003534256.1| - 0.0057 15.8 0.0 0.0066 15.6 0.0 1.1 1 0 0 1 1 1 1 Coronavirus NSP16 Methyltransf_25 PF13649.6 gi|292654359|ref|YP_003534256.1| - 0.04 14.6 0.3 0.12 13.0 0.3 2.0 1 1 0 1 1 1 0 Methyltransferase domain MauJ PF17419.2 gi|292654359|ref|YP_003534256.1| - 0.04 13.4 0.0 0.6 9.5 0.0 2.0 1 1 1 2 2 2 0 Methylamine utilization protein MauJ DUF1361 PF07099.11 gi|292654360|ref|YP_003534257.1| - 0.032 14.2 0.8 0.048 13.6 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1361) ATP1G1_PLM_MAT8 PF02038.16 gi|292654360|ref|YP_003534257.1| - 0.15 11.5 0.1 0.36 10.3 0.1 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF3487 PF11990.8 gi|292654360|ref|YP_003534257.1| - 1.5 8.7 3.9 1.1 9.1 2.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) zf-ribbon_3 PF13248.6 gi|292654361|ref|YP_003534258.1| - 0.0057 16.0 0.0 0.0086 15.5 0.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Mu-like_Com PF10122.9 gi|292654361|ref|YP_003534258.1| - 0.028 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_5 PF13719.6 gi|292654361|ref|YP_003534258.1| - 0.12 12.2 0.8 0.38 10.5 0.1 2.0 2 1 0 2 2 2 0 zinc-ribbon domain DUF2752 PF10825.8 gi|292654361|ref|YP_003534258.1| - 0.14 12.3 1.5 0.17 12.0 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) DUF1302 PF06980.11 gi|292654361|ref|YP_003534258.1| - 0.18 10.4 0.0 0.18 10.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1302) Vut_1 PF02592.15 gi|292654362|ref|YP_003534259.1| - 3e-48 164.0 6.4 3e-48 164.0 6.4 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter RHH_1 PF01402.21 gi|292654363|ref|YP_003534260.1| - 0.0001 22.1 1.1 0.0002 21.1 0.3 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TatC PF00902.18 gi|292654364|ref|YP_003534261.1| - 2.1e-69 233.5 41.7 3.4e-38 131.5 16.5 2.3 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) ISK_Channel PF02060.15 gi|292654364|ref|YP_003534261.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Slow voltage-gated potassium channel TatC PF00902.18 gi|292654365|ref|YP_003534262.1| - 1.6e-35 122.8 13.1 1.9e-35 122.6 13.1 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) PLDc_N PF13396.6 gi|292654366|ref|YP_003534263.1| - 0.00051 19.9 0.1 0.00087 19.2 0.1 1.3 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal RecR PF02132.15 gi|292654366|ref|YP_003534263.1| - 0.00062 19.3 1.2 0.00098 18.6 1.2 1.3 1 0 0 1 1 1 1 RecR protein zf-ribbon_3 PF13248.6 gi|292654366|ref|YP_003534263.1| - 0.0028 17.0 0.7 0.0042 16.5 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|292654366|ref|YP_003534263.1| - 0.027 14.5 0.8 0.034 14.2 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF2834 PF11196.8 gi|292654366|ref|YP_003534263.1| - 0.17 12.2 2.0 0.36 11.2 1.9 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2834) Zn-ribbon_8 PF09723.10 gi|292654366|ref|YP_003534263.1| - 1.2 9.3 4.1 0.87 9.8 0.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Polyketide_cyc2 PF10604.9 gi|292654367|ref|YP_003534264.1| - 2.9e-16 60.0 0.3 3.4e-16 59.8 0.3 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|292654367|ref|YP_003534264.1| - 1.8e-07 31.4 0.1 3.3e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|292654367|ref|YP_003534264.1| - 6e-07 29.7 0.0 7.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein His_Phos_1 PF00300.22 gi|292654368|ref|YP_003534265.1| - 5.2e-49 166.6 0.2 6.1e-49 166.3 0.2 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) CbiG_N PF11760.8 gi|292654368|ref|YP_003534265.1| - 0.075 13.1 0.0 2.2 8.3 0.0 2.7 2 1 1 3 3 3 0 Cobalamin synthesis G N-terminal Asn_synthase PF00733.21 gi|292654369|ref|YP_003534266.1| - 1.2e-12 48.2 0.3 1.9e-12 47.5 0.3 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|292654369|ref|YP_003534266.1| - 9.2e-10 38.0 0.0 1.4e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|292654369|ref|YP_003534266.1| - 3e-09 36.2 0.0 3.4e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|292654369|ref|YP_003534266.1| - 1.4e-05 24.7 0.0 0.00011 21.8 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|292654369|ref|YP_003534266.1| - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|292654369|ref|YP_003534266.1| - 0.0043 16.8 0.0 0.013 15.3 0.0 1.9 1 1 0 1 1 1 1 PP-loop family QueH PF02677.14 gi|292654369|ref|YP_003534266.1| - 0.018 15.1 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH ThiI PF02568.14 gi|292654369|ref|YP_003534266.1| - 0.026 14.1 0.0 0.081 12.5 0.0 1.8 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|292654369|ref|YP_003534266.1| - 0.098 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family MutS_V PF00488.21 gi|292654370|ref|YP_003534267.1| - 3.4e-08 33.7 0.2 6.1e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|292654370|ref|YP_003534267.1| - 0.00037 21.0 6.5 0.00057 20.4 0.5 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|292654370|ref|YP_003534267.1| - 0.0096 15.8 2.1 0.036 14.0 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|292654370|ref|YP_003534267.1| - 0.02 15.2 0.0 0.071 13.4 0.0 1.9 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family AAA_21 PF13304.6 gi|292654370|ref|YP_003534267.1| - 1.1 9.0 3.9 4.9 6.9 0.0 2.6 2 1 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system Ycf70 PF17382.2 gi|292654371|ref|YP_003534268.1| - 0.2 12.1 0.2 0.28 11.6 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized Ycf70-like DUF2207 PF09972.9 gi|292654371|ref|YP_003534268.1| - 0.76 8.5 2.3 0.81 8.4 2.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF5056 PF16479.5 gi|292654371|ref|YP_003534268.1| - 1.5 9.1 4.4 5.2 7.4 4.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF5056) Phage_holin_3_6 PF07332.11 gi|292654371|ref|YP_003534268.1| - 2.1 8.4 10.7 2.5 8.2 10.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III MHYT PF03707.16 gi|292654372|ref|YP_003534269.1| - 0.1 12.8 0.6 0.1 12.8 0.6 1.9 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat Metal_resist PF13801.6 gi|292654372|ref|YP_003534269.1| - 0.11 12.7 0.6 0.49 10.6 0.0 1.9 2 0 0 2 2 2 0 Heavy-metal resistance AAA_16 PF13191.6 gi|292654373|ref|YP_003534270.1| - 4.3e-13 50.0 0.7 5.3e-11 43.2 0.4 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292654373|ref|YP_003534270.1| - 1.2e-09 38.6 0.0 2.6e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|292654373|ref|YP_003534270.1| - 8.1e-06 26.3 0.0 2.4e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|292654373|ref|YP_003534270.1| - 1.1e-05 25.3 0.0 2.8e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_33 PF13671.6 gi|292654373|ref|YP_003534270.1| - 0.00041 20.5 0.0 0.00073 19.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|292654373|ref|YP_003534270.1| - 0.00055 19.8 0.0 0.00083 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|292654373|ref|YP_003534270.1| - 0.0026 17.3 0.0 0.023 14.2 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|292654373|ref|YP_003534270.1| - 0.0045 16.9 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|292654373|ref|YP_003534270.1| - 0.0054 16.5 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|292654373|ref|YP_003534270.1| - 0.0062 15.4 0.0 0.096 11.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain Rad17 PF03215.15 gi|292654373|ref|YP_003534270.1| - 0.013 15.4 0.0 0.066 13.1 0.0 2.2 1 1 1 2 2 2 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|292654373|ref|YP_003534270.1| - 0.014 15.2 0.7 2.1 8.0 0.0 2.6 3 0 0 3 3 2 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|292654373|ref|YP_003534270.1| - 0.016 15.1 0.2 0.029 14.3 0.2 1.4 1 0 0 1 1 1 0 NTPase TIP49_C PF17856.1 gi|292654373|ref|YP_003534270.1| - 0.02 15.0 0.0 0.064 13.4 0.0 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_6 PF12774.7 gi|292654373|ref|YP_003534270.1| - 0.026 13.5 0.0 0.049 12.6 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_14 PF13173.6 gi|292654373|ref|YP_003534270.1| - 0.031 14.3 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|292654373|ref|YP_003534270.1| - 0.041 13.6 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|292654373|ref|YP_003534270.1| - 0.043 14.1 0.0 0.08 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|292654373|ref|YP_003534270.1| - 0.048 12.7 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_32 PF13654.6 gi|292654373|ref|YP_003534270.1| - 0.084 11.6 0.0 7.7 5.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|292654373|ref|YP_003534270.1| - 0.088 13.4 0.1 0.2 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|292654373|ref|YP_003534270.1| - 0.088 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.18 gi|292654373|ref|YP_003534270.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|292654373|ref|YP_003534270.1| - 0.09 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|292654373|ref|YP_003534270.1| - 0.093 11.9 0.0 0.36 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|292654373|ref|YP_003534270.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|292654373|ref|YP_003534270.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|292654373|ref|YP_003534270.1| - 0.15 12.1 0.1 0.3 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Rib_5-P_isom_A PF06026.14 gi|292654374|ref|YP_003534271.1| - 2.6e-61 206.2 0.0 3.2e-61 205.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|292654374|ref|YP_003534271.1| - 2e-06 27.9 1.0 2e-05 24.6 0.2 2.2 1 1 0 2 2 2 1 DeoR C terminal sensor domain DUF1931 PF09123.11 gi|292654375|ref|YP_003534272.1| - 4.2e-05 23.7 1.2 4.6e-05 23.6 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|292654375|ref|YP_003534272.1| - 0.00027 21.2 0.1 0.00043 20.5 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DctP PF03480.13 gi|292654375|ref|YP_003534272.1| - 0.016 14.5 0.1 0.017 14.5 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Histone PF00125.24 gi|292654375|ref|YP_003534272.1| - 0.025 15.0 0.1 0.025 15.0 0.1 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Peptidase_M41 PF01434.18 gi|292654375|ref|YP_003534272.1| - 0.063 13.1 0.1 0.068 13.0 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M41 Glutaredoxin PF00462.24 gi|292654375|ref|YP_003534272.1| - 0.16 12.2 0.5 0.19 11.9 0.5 1.1 1 0 0 1 1 1 0 Glutaredoxin AIRC PF00731.20 gi|292654376|ref|YP_003534273.1| - 9.5e-16 57.7 3.3 9.5e-16 57.7 3.3 1.9 2 0 0 2 2 2 1 AIR carboxylase Creatininase PF02633.14 gi|292654376|ref|YP_003534273.1| - 0.0078 15.7 2.9 0.023 14.1 1.7 2.0 1 1 0 2 2 2 1 Creatinine amidohydrolase LytR_C PF13399.6 gi|292654376|ref|YP_003534273.1| - 0.34 11.9 6.7 2.5 9.2 0.2 2.8 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator Lar_restr_allev PF14354.6 gi|292654377|ref|YP_003534274.1| - 0.00046 20.5 0.6 0.00047 20.5 0.6 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|292654377|ref|YP_003534274.1| - 0.0011 19.2 1.9 0.071 13.3 0.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain DUF3268 PF11672.8 gi|292654377|ref|YP_003534274.1| - 0.0035 17.6 0.2 0.0036 17.6 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain DZR PF12773.7 gi|292654377|ref|YP_003534274.1| - 0.0036 17.3 0.4 0.0051 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|292654377|ref|YP_003534274.1| - 0.0058 16.0 2.1 0.61 9.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain C1_1 PF00130.22 gi|292654377|ref|YP_003534274.1| - 0.0068 16.3 0.3 0.009 15.9 0.3 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_10 PF10058.9 gi|292654377|ref|YP_003534274.1| - 0.014 15.2 1.0 0.22 11.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|292654377|ref|YP_003534274.1| - 0.015 15.4 2.8 0.058 13.5 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|292654377|ref|YP_003534274.1| - 0.031 14.2 0.8 0.072 13.0 0.8 1.6 1 1 0 1 1 1 0 Nudix N-terminal zf-RRN7 PF11781.8 gi|292654377|ref|YP_003534274.1| - 0.049 13.3 2.3 0.8 9.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|292654377|ref|YP_003534274.1| - 0.05 13.6 3.9 0.5 10.4 3.9 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|292654377|ref|YP_003534274.1| - 0.053 13.4 0.5 0.066 13.1 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain ATPase-cat_bd PF12156.8 gi|292654377|ref|YP_003534274.1| - 0.061 14.1 1.0 0.066 13.9 1.0 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Zn_Tnp_IS1595 PF12760.7 gi|292654377|ref|YP_003534274.1| - 0.11 12.5 3.7 3 7.9 3.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GIY-YIG PF01541.24 gi|292654378|ref|YP_003534275.1| - 2.4e-19 69.4 0.1 2.8e-19 69.1 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|292654378|ref|YP_003534275.1| - 0.017 15.7 0.1 0.019 15.5 0.1 1.2 1 0 0 1 1 1 0 T5orf172 domain PGM_PMM_I PF02878.16 gi|292654379|ref|YP_003534276.1| - 7.6e-38 129.3 0.0 1.3e-37 128.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|292654379|ref|YP_003534276.1| - 1.6e-25 89.7 0.8 3.6e-25 88.6 0.8 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|292654379|ref|YP_003534276.1| - 9.9e-24 83.7 0.1 2e-23 82.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|292654379|ref|YP_003534276.1| - 2.3e-13 50.1 0.1 1e-12 48.0 0.1 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain HTH_20 PF12840.7 gi|292654380|ref|YP_003534277.1| - 2.3e-06 27.6 0.2 4.3e-05 23.5 0.1 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654380|ref|YP_003534277.1| - 0.023 14.6 0.0 6.3 6.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Jag_N PF14804.6 gi|292654380|ref|YP_003534277.1| - 0.049 14.0 0.0 0.077 13.3 0.0 1.2 1 0 0 1 1 1 0 Jag N-terminus Acetyltransf_7 PF13508.7 gi|292654381|ref|YP_003534278.1| - 1.7e-12 47.6 0.0 2.3e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292654381|ref|YP_003534278.1| - 2.7e-10 40.3 0.0 3.9e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292654381|ref|YP_003534278.1| - 2.6e-09 37.3 0.0 3.7e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|292654381|ref|YP_003534278.1| - 5.3e-06 26.5 0.1 0.0015 18.6 0.1 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292654381|ref|YP_003534278.1| - 0.00096 19.1 0.2 0.0068 16.3 0.2 2.2 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|292654381|ref|YP_003534278.1| - 0.0021 18.1 0.0 0.0034 17.5 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Invasin_D3 PF09134.10 gi|292654382|ref|YP_003534279.1| - 0.059 13.7 0.0 0.067 13.5 0.0 1.1 1 0 0 1 1 1 0 Invasin, domain 3 Rep_fac_C PF08542.11 gi|292654383|ref|YP_003534280.1| - 2.8e-24 85.3 0.1 8.2e-24 83.8 0.1 1.8 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|292654383|ref|YP_003534280.1| - 3e-18 66.5 0.0 2.7e-16 60.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|292654383|ref|YP_003534280.1| - 8.4e-18 64.7 0.0 1.4e-12 47.7 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|292654383|ref|YP_003534280.1| - 8.1e-10 39.3 0.4 4.6e-06 27.1 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|292654383|ref|YP_003534280.1| - 6.9e-08 32.4 0.0 1.1e-06 28.5 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|292654383|ref|YP_003534280.1| - 3.3e-06 27.3 0.3 1.1e-05 25.6 0.3 2.1 1 1 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|292654383|ref|YP_003534280.1| - 4.8e-06 26.5 0.0 1.7e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|292654383|ref|YP_003534280.1| - 2.4e-05 24.1 0.0 0.00052 19.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|292654383|ref|YP_003534280.1| - 3.5e-05 23.8 0.0 7e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292654383|ref|YP_003534280.1| - 8.6e-05 22.8 0.4 0.6 10.4 0.0 2.6 1 1 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|292654383|ref|YP_003534280.1| - 0.00018 21.5 0.0 0.00034 20.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|292654383|ref|YP_003534280.1| - 0.00048 19.8 0.4 0.0022 17.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|292654383|ref|YP_003534280.1| - 0.0012 18.9 0.0 0.036 14.1 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|292654383|ref|YP_003534280.1| - 0.0029 17.0 0.0 0.76 9.1 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|292654383|ref|YP_003534280.1| - 0.0037 17.3 0.1 0.027 14.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|292654383|ref|YP_003534280.1| - 0.0045 16.8 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|292654383|ref|YP_003534280.1| - 0.0049 17.4 0.0 0.021 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|292654383|ref|YP_003534280.1| - 0.0065 16.2 0.0 0.31 10.7 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|292654383|ref|YP_003534280.1| - 0.01 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|292654383|ref|YP_003534280.1| - 0.019 15.4 0.1 0.032 14.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|292654383|ref|YP_003534280.1| - 0.032 13.9 0.1 0.35 10.5 0.0 2.3 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|292654383|ref|YP_003534280.1| - 0.054 13.0 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region SNF2_N PF00176.23 gi|292654383|ref|YP_003534280.1| - 0.078 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain RNA_helicase PF00910.22 gi|292654383|ref|YP_003534280.1| - 0.11 12.8 0.0 0.29 11.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase CbiA PF01656.23 gi|292654383|ref|YP_003534280.1| - 0.14 12.2 0.0 1.4 8.9 0.0 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|292654383|ref|YP_003534280.1| - 0.16 11.8 0.0 1.3 8.9 0.0 2.2 2 1 0 2 2 2 0 NACHT domain DEAD PF00270.29 gi|292654383|ref|YP_003534280.1| - 0.28 10.9 1.0 4.7 6.9 0.1 2.8 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|292654383|ref|YP_003534280.1| - 0.6 9.8 4.4 0.23 11.2 0.2 2.4 2 2 0 2 2 2 0 AAA domain GAF_2 PF13185.6 gi|292654384|ref|YP_003534281.1| - 3e-21 76.1 8.0 1.2e-11 45.0 0.4 3.9 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.26 gi|292654384|ref|YP_003534281.1| - 2.4e-14 53.8 0.1 6.7e-14 52.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|292654384|ref|YP_003534281.1| - 4.6e-12 45.8 1.4 4.6e-12 45.8 1.4 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|292654384|ref|YP_003534281.1| - 7.2e-11 42.5 0.0 7.5e-07 29.5 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|292654384|ref|YP_003534281.1| - 3.8e-08 34.0 0.0 0.0025 18.4 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|292654384|ref|YP_003534281.1| - 4.9e-08 33.0 0.0 1.7e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|292654384|ref|YP_003534281.1| - 1.7e-07 31.4 4.2 9.5e-07 29.0 0.1 3.8 3 1 1 4 4 4 1 PAS fold PAS_8 PF13188.7 gi|292654384|ref|YP_003534281.1| - 4.8e-07 29.6 0.2 1.9e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|292654384|ref|YP_003534281.1| - 0.00038 20.7 0.0 0.0012 19.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|292654384|ref|YP_003534281.1| - 0.002 18.1 0.4 0.01 15.8 0.2 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF3391 PF11871.8 gi|292654384|ref|YP_003534281.1| - 1.2 9.7 3.4 4.4 7.9 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) TspO_MBR PF03073.15 gi|292654385|ref|YP_003534282.1| - 1.9e-42 144.5 20.0 2.3e-42 144.3 20.0 1.0 1 0 0 1 1 1 1 TspO/MBR family Cyt_bd_oxida_II PF02322.15 gi|292654385|ref|YP_003534282.1| - 0.027 13.8 18.8 0.033 13.6 18.8 1.1 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II MHYT PF03707.16 gi|292654385|ref|YP_003534282.1| - 3.4 7.9 13.4 6.3 7.0 1.5 3.0 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat tRNA-synt_2c PF01411.19 gi|292654386|ref|YP_003534283.1| - 2.4e-119 399.3 0.0 3e-119 399.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|292654386|ref|YP_003534283.1| - 1.4e-16 61.2 2.1 2.7e-16 60.2 2.1 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|292654386|ref|YP_003534283.1| - 3.5e-12 46.2 0.7 6.6e-12 45.3 0.7 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Abhydrolase_1 PF00561.20 gi|292654387|ref|YP_003534284.1| - 2.7e-16 60.0 0.1 8e-10 38.8 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|292654387|ref|YP_003534284.1| - 4.5e-14 52.3 0.0 6.7e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|292654387|ref|YP_003534284.1| - 1.7e-13 51.7 16.2 2.1e-13 51.4 16.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|292654387|ref|YP_003534284.1| - 0.0012 19.0 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|292654387|ref|YP_003534284.1| - 0.03 14.1 0.0 6.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Thioesterase PF00975.20 gi|292654387|ref|YP_003534284.1| - 0.16 12.0 0.1 0.32 11.1 0.1 1.7 1 1 0 1 1 1 0 Thioesterase domain GATase PF00117.28 gi|292654388|ref|YP_003534285.1| - 5.5e-22 78.5 0.0 7e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292654388|ref|YP_003534285.1| - 7.7e-09 35.6 0.1 4.9e-08 33.0 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|292654388|ref|YP_003534285.1| - 0.18 11.4 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Acyl-CoA_dh_1 PF00441.24 gi|292654389|ref|YP_003534286.1| - 1.2e-33 116.4 1.3 1.6e-33 116.0 1.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|292654389|ref|YP_003534286.1| - 4.6e-26 91.7 0.0 1.1e-25 90.4 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|292654389|ref|YP_003534286.1| - 4.9e-24 84.4 0.2 1.1e-23 83.2 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|292654389|ref|YP_003534286.1| - 6.2e-12 45.9 2.1 9.3e-12 45.4 2.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|292654389|ref|YP_003534286.1| - 0.011 15.4 0.3 0.052 13.2 0.3 1.9 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Metal_resist PF13801.6 gi|292654390|ref|YP_003534287.1| - 0.18 12.0 4.6 0.24 11.6 4.6 1.1 1 0 0 1 1 1 0 Heavy-metal resistance Fer4_7 PF12838.7 gi|292654391|ref|YP_003534288.1| - 4e-13 49.7 20.6 1.4e-07 32.0 7.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|292654391|ref|YP_003534288.1| - 4.5e-12 45.3 13.8 1.6e-07 30.8 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|292654391|ref|YP_003534288.1| - 2.3e-09 36.9 14.1 1.6e-05 24.8 5.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|292654391|ref|YP_003534288.1| - 7.3e-08 32.5 4.8 2.1e-07 31.0 5.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292654391|ref|YP_003534288.1| - 2.2e-07 30.9 18.4 2.4e-05 24.3 8.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|292654391|ref|YP_003534288.1| - 5e-07 29.8 11.2 4.2e-06 26.8 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|292654391|ref|YP_003534288.1| - 8.8e-06 26.6 5.3 0.00068 20.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|292654391|ref|YP_003534288.1| - 3.2e-05 23.8 11.2 0.013 15.5 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|292654391|ref|YP_003534288.1| - 7.7e-05 23.2 1.5 0.081 13.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|292654391|ref|YP_003534288.1| - 0.00021 21.5 1.4 0.00021 21.5 1.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|292654391|ref|YP_003534288.1| - 0.00042 20.7 7.1 0.025 15.0 7.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|292654391|ref|YP_003534288.1| - 0.00062 20.5 11.1 0.0059 17.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|292654391|ref|YP_003534288.1| - 0.00062 20.3 14.1 0.025 15.1 14.1 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|292654391|ref|YP_003534288.1| - 0.0066 16.6 3.9 0.0066 16.6 3.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|292654391|ref|YP_003534288.1| - 0.012 15.7 0.8 0.016 15.4 0.8 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|292654391|ref|YP_003534288.1| - 1.4 9.8 15.0 35 5.2 15.0 2.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain Glyoxalase PF00903.25 gi|292654392|ref|YP_003534289.1| - 6.1e-12 45.9 0.1 7.1e-12 45.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|292654392|ref|YP_003534289.1| - 6.2e-08 32.9 0.1 2.6e-07 30.9 0.1 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|292654392|ref|YP_003534289.1| - 0.0082 16.1 0.0 0.055 13.4 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|292654392|ref|YP_003534289.1| - 0.045 13.9 0.2 0.34 11.0 0.3 1.9 1 1 1 2 2 2 0 Glyoxalase-like domain Ferritin PF00210.24 gi|292654393|ref|YP_003534290.1| - 9.6e-25 87.2 1.6 1.1e-24 87.0 1.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|292654393|ref|YP_003534290.1| - 6.3e-08 33.1 0.4 7.4e-08 32.9 0.4 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|292654393|ref|YP_003534290.1| - 0.00066 20.0 2.1 0.53 10.7 0.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) DUF892 PF05974.12 gi|292654393|ref|YP_003534290.1| - 0.00083 19.4 5.3 0.0034 17.4 5.3 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|292654393|ref|YP_003534290.1| - 0.0037 17.5 0.3 0.0051 17.0 0.3 1.3 1 0 0 1 1 1 1 Ferritin-like domain Mn_catalase PF05067.12 gi|292654393|ref|YP_003534290.1| - 0.0047 15.9 0.8 0.025 13.5 0.1 1.9 1 1 1 2 2 2 1 Manganese containing catalase Ferritin-like PF12902.7 gi|292654393|ref|YP_003534290.1| - 0.005 16.7 0.1 0.0062 16.4 0.1 1.2 1 1 0 1 1 1 1 Ferritin-like NTF2 PF02136.20 gi|292654393|ref|YP_003534290.1| - 0.014 16.0 0.0 0.016 15.8 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DUF349 PF03993.12 gi|292654393|ref|YP_003534290.1| - 0.065 13.5 2.5 1.4 9.3 0.1 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) Ldh_1_N PF00056.23 gi|292654394|ref|YP_003534291.1| - 3.4e-43 147.1 0.1 5.6e-43 146.4 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|292654394|ref|YP_003534291.1| - 2.5e-30 105.6 0.1 6e-28 97.9 0.0 2.1 2 0 0 2 2 2 2 lactate/malate dehydrogenase, alpha/beta C-terminal domain TrkA_N PF02254.18 gi|292654394|ref|YP_003534291.1| - 0.0072 16.6 0.2 0.016 15.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|292654394|ref|YP_003534291.1| - 0.021 15.2 0.1 0.041 14.3 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Arm_3 PF16186.5 gi|292654394|ref|YP_003534291.1| - 0.023 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Atypical Arm repeat 3Beta_HSD PF01073.19 gi|292654394|ref|YP_003534291.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family UDPG_MGDP_dh_N PF03721.14 gi|292654394|ref|YP_003534291.1| - 0.57 9.7 2.8 0.76 9.3 0.2 2.3 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CCG PF02754.16 gi|292654395|ref|YP_003534292.1| - 6.7e-19 67.9 0.0 3.4e-13 49.6 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|292654395|ref|YP_003534292.1| - 2e-10 40.9 4.3 2e-10 40.9 4.3 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292654395|ref|YP_003534292.1| - 4.2e-10 39.6 11.1 3e-08 33.6 11.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|292654395|ref|YP_003534292.1| - 1.1e-09 37.6 14.6 5.3e-05 22.9 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|292654395|ref|YP_003534292.1| - 2.3e-09 37.3 8.5 3.1e-09 36.8 5.6 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|292654395|ref|YP_003534292.1| - 6.1e-08 32.3 12.6 8.7e-05 22.4 2.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|292654395|ref|YP_003534292.1| - 7.6e-08 32.8 9.7 7.6e-08 32.8 9.7 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|292654395|ref|YP_003534292.1| - 1.2e-05 25.5 16.6 0.0039 17.6 0.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|292654395|ref|YP_003534292.1| - 0.00014 22.7 12.8 0.0081 17.1 13.6 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|292654395|ref|YP_003534292.1| - 0.00017 22.0 10.6 0.00017 22.0 10.6 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|292654395|ref|YP_003534292.1| - 0.0002 21.4 11.5 0.019 15.1 0.9 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|292654395|ref|YP_003534292.1| - 0.0012 18.9 5.6 0.0012 18.9 5.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|292654395|ref|YP_003534292.1| - 0.0045 17.8 7.4 0.051 14.4 0.4 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|292654395|ref|YP_003534292.1| - 0.16 12.7 8.0 0.41 11.4 0.7 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.14 gi|292654395|ref|YP_003534292.1| - 0.34 10.4 6.3 0.58 9.7 6.3 1.3 1 0 0 1 1 1 0 Nitrate reductase gamma subunit Fer4_13 PF13370.6 gi|292654395|ref|YP_003534292.1| - 1.8 9.1 16.3 5.3 7.7 3.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|292654395|ref|YP_003534292.1| - 3.9 7.7 11.6 5 7.4 2.6 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|292654395|ref|YP_003534292.1| - 4.6 8.4 27.4 0.65 11.1 5.1 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain CbiQ PF02361.16 gi|292654396|ref|YP_003534293.1| - 3.5e-13 49.7 7.2 1.4e-12 47.7 7.2 1.8 1 1 0 1 1 1 1 Cobalt transport protein NicO PF03824.16 gi|292654396|ref|YP_003534293.1| - 0.002 17.6 0.2 0.01 15.2 0.0 1.9 2 0 0 2 2 2 1 High-affinity nickel-transport protein QCR10 PF09796.9 gi|292654396|ref|YP_003534293.1| - 0.13 12.3 0.1 0.13 12.3 0.1 2.0 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) ABC_tran PF00005.27 gi|292654397|ref|YP_003534294.1| - 1.7e-26 93.3 0.0 2.3e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292654397|ref|YP_003534294.1| - 3.5e-09 36.9 0.0 0.00059 19.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|292654397|ref|YP_003534294.1| - 9.4e-07 29.4 0.8 1.8e-06 28.5 0.8 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|292654397|ref|YP_003534294.1| - 0.00014 22.5 0.2 0.53 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|292654397|ref|YP_003534294.1| - 0.00037 20.0 0.0 0.013 14.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292654397|ref|YP_003534294.1| - 0.00093 18.9 0.1 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|292654397|ref|YP_003534294.1| - 0.0013 19.0 0.1 0.025 14.8 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|292654397|ref|YP_003534294.1| - 0.0037 17.5 0.1 0.012 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|292654397|ref|YP_003534294.1| - 0.0072 16.6 0.1 0.013 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|292654397|ref|YP_003534294.1| - 0.0087 16.0 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.12 gi|292654397|ref|YP_003534294.1| - 0.015 14.6 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|292654397|ref|YP_003534294.1| - 0.017 14.7 0.9 0.46 10.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|292654397|ref|YP_003534294.1| - 0.018 15.2 0.4 0.059 13.5 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|292654397|ref|YP_003534294.1| - 0.02 14.6 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|292654397|ref|YP_003534294.1| - 0.028 13.8 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|292654397|ref|YP_003534294.1| - 0.03 14.0 0.6 0.049 13.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain Ploopntkinase1 PF18748.1 gi|292654397|ref|YP_003534294.1| - 0.039 13.5 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 cobW PF02492.19 gi|292654397|ref|YP_003534294.1| - 0.04 13.5 0.1 0.097 12.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|292654397|ref|YP_003534294.1| - 0.043 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|292654397|ref|YP_003534294.1| - 0.057 13.9 0.0 0.077 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|292654397|ref|YP_003534294.1| - 0.076 13.3 0.1 0.14 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|292654397|ref|YP_003534294.1| - 0.096 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 KaiC DLIC PF05783.11 gi|292654397|ref|YP_003534294.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|292654397|ref|YP_003534294.1| - 0.11 12.3 0.1 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|292654397|ref|YP_003534294.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|292654397|ref|YP_003534294.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_ATPase PF09818.9 gi|292654397|ref|YP_003534294.1| - 0.15 10.8 0.1 6 5.5 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|292654397|ref|YP_003534294.1| - 0.16 10.5 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|292654397|ref|YP_003534294.1| - 0.17 11.4 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF3584 PF12128.8 gi|292654397|ref|YP_003534294.1| - 0.18 9.3 0.1 0.24 8.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TsaE PF02367.17 gi|292654397|ref|YP_003534294.1| - 0.21 11.6 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE BioY PF02632.14 gi|292654398|ref|YP_003534295.1| - 2e-34 118.5 20.7 3e-34 118.0 20.7 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|292654398|ref|YP_003534295.1| - 0.00017 21.7 17.3 0.00022 21.4 17.3 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component HCV_NS5a_1a PF08300.13 gi|292654398|ref|YP_003534295.1| - 0.078 13.1 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain MCM PF00493.23 gi|292654400|ref|YP_003534297.1| - 1.9e-90 301.9 0.0 2.8e-90 301.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|292654400|ref|YP_003534297.1| - 1.6e-35 121.7 0.2 2.9e-35 120.9 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|292654400|ref|YP_003534297.1| - 7.9e-27 93.5 0.1 4.4e-26 91.1 0.1 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|292654400|ref|YP_003534297.1| - 7.1e-10 38.6 0.0 1.2e-05 24.8 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|292654400|ref|YP_003534297.1| - 3.6e-08 33.9 2.8 1.2e-07 32.2 1.2 2.6 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|292654400|ref|YP_003534297.1| - 2.2e-06 27.7 0.0 7.1e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|292654400|ref|YP_003534297.1| - 0.00052 20.4 0.0 0.0016 18.9 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|292654400|ref|YP_003534297.1| - 0.0033 17.2 0.0 0.061 13.0 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|292654400|ref|YP_003534297.1| - 0.038 13.7 0.1 0.081 12.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|292654400|ref|YP_003534297.1| - 0.046 14.1 0.0 0.15 12.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|292654400|ref|YP_003534297.1| - 0.06 13.2 0.0 0.28 11.1 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RcpC PF16976.5 gi|292654400|ref|YP_003534297.1| - 0.083 12.9 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Flp pilus assembly protein RcpC/CpaB AAA_7 PF12775.7 gi|292654400|ref|YP_003534297.1| - 0.17 11.4 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF773 PF05600.12 gi|292654402|ref|YP_003534299.1| - 0.15 10.8 0.1 0.15 10.7 0.1 1.1 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 XhlA PF10779.9 gi|292654403|ref|YP_003534300.1| - 0.57 10.4 3.4 10 6.4 0.1 3.0 2 1 1 3 3 3 0 Haemolysin XhlA NAM-associated PF14303.6 gi|292654403|ref|YP_003534300.1| - 0.85 10.3 6.6 1.2 9.9 6.6 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain Spc7 PF08317.11 gi|292654403|ref|YP_003534300.1| - 4.4 6.1 9.2 7.9 5.3 8.8 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein Atg14 PF10186.9 gi|292654403|ref|YP_003534300.1| - 7.6 5.5 6.3 21 4.1 6.3 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ParA PF10609.9 gi|292654405|ref|YP_003534302.1| - 4.8e-11 42.6 0.3 1.2e-06 28.1 0.1 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|292654405|ref|YP_003534302.1| - 1.3e-09 38.1 0.0 1.8e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|292654405|ref|YP_003534302.1| - 9e-09 35.5 0.0 0.0015 18.5 0.2 2.1 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|292654405|ref|YP_003534302.1| - 0.00076 19.0 0.1 0.58 9.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|292654405|ref|YP_003534302.1| - 0.002 17.3 0.1 0.0058 15.8 0.2 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_33 PF13671.6 gi|292654405|ref|YP_003534302.1| - 0.0035 17.5 0.0 0.0051 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|292654405|ref|YP_003534302.1| - 0.0039 16.7 0.4 1.5 8.2 0.0 2.9 3 0 0 3 3 3 1 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|292654405|ref|YP_003534302.1| - 0.0043 17.6 0.1 0.0093 16.5 0.0 1.8 2 1 0 2 2 2 1 AAA domain NAD_binding_3 PF03447.16 gi|292654405|ref|YP_003534302.1| - 0.028 15.1 0.8 0.044 14.4 0.1 1.8 2 0 0 2 2 1 0 Homoserine dehydrogenase, NAD binding domain MipZ PF09140.11 gi|292654405|ref|YP_003534302.1| - 0.069 12.4 0.6 5.4 6.2 0.2 2.1 2 0 0 2 2 2 0 ATPase MipZ AAA_24 PF13479.6 gi|292654405|ref|YP_003534302.1| - 0.079 12.7 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|292654405|ref|YP_003534302.1| - 0.13 12.4 0.1 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 Shikimate kinase RNA_helicase PF00910.22 gi|292654405|ref|YP_003534302.1| - 0.14 12.5 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TFIIB PF00382.19 gi|292654406|ref|YP_003534303.1| - 2.4e-32 110.8 0.6 1.9e-17 63.1 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292654406|ref|YP_003534303.1| - 4.8e-12 45.2 1.5 8.8e-12 44.3 1.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|292654406|ref|YP_003534303.1| - 0.00035 20.6 0.0 0.00059 19.9 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|292654406|ref|YP_003534303.1| - 0.17 11.4 1.9 0.38 10.2 1.9 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HTH_28 PF13518.6 gi|292654407|ref|YP_003534304.1| - 0.17 12.0 0.4 2.4 8.4 0.0 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain CBP_BcsQ PF06564.12 gi|292654408|ref|YP_003534305.1| - 2.7e-06 27.0 1.3 1.4e-05 24.7 1.3 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|292654408|ref|YP_003534305.1| - 5e-05 23.3 0.0 9.5e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|292654408|ref|YP_003534305.1| - 7.5e-05 22.8 0.0 0.00011 22.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|292654408|ref|YP_003534305.1| - 0.0014 17.9 0.9 0.081 12.2 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|292654408|ref|YP_003534305.1| - 0.0029 17.1 0.3 0.0047 16.4 0.3 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Bac_export_2 PF01312.19 gi|292654409|ref|YP_003534306.1| - 1.1 8.4 7.0 2.8 7.1 7.1 1.6 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family HIT PF01230.23 gi|292654410|ref|YP_003534307.1| - 7.4e-26 90.8 0.0 9.1e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|292654410|ref|YP_003534307.1| - 3.1e-13 50.2 0.0 3.9e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 gi|292654410|ref|YP_003534307.1| - 0.015 15.1 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain CwfJ_C_1 PF04677.15 gi|292654410|ref|YP_003534307.1| - 0.021 14.7 0.1 0.033 14.1 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 UDG PF03167.19 gi|292654411|ref|YP_003534308.1| - 9.8e-27 93.8 0.0 1.2e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Promethin PF16015.5 gi|292654412|ref|YP_003534309.1| - 0.068 13.1 3.3 0.084 12.8 3.3 1.1 1 0 0 1 1 1 0 Promethin Pribosyltran_N PF13793.6 gi|292654413|ref|YP_003534310.1| - 1.3e-20 73.5 0.0 3.7e-20 72.0 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|292654413|ref|YP_003534310.1| - 4.5e-14 52.3 1.3 1.4e-13 50.7 0.4 2.2 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|292654413|ref|YP_003534310.1| - 1.5e-08 34.9 0.2 2.8e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|292654413|ref|YP_003534310.1| - 0.00052 19.5 0.0 0.00084 18.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Glyco_hydro_42M PF08532.10 gi|292654413|ref|YP_003534310.1| - 0.002 17.6 0.1 0.0052 16.3 0.0 1.7 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain PAS_7 PF12860.7 gi|292654413|ref|YP_003534310.1| - 0.066 13.4 0.0 2 8.6 0.0 2.3 1 1 1 2 2 2 0 PAS fold Terminase_1 PF03354.15 gi|292654413|ref|YP_003534310.1| - 0.18 10.3 0.0 0.29 9.6 0.0 1.3 1 0 0 1 1 1 0 Phage Terminase SWIM PF04434.17 gi|292654415|ref|YP_003534312.1| - 2.2e-05 24.0 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger TRM PF02005.16 gi|292654416|ref|YP_003534313.1| - 1.1e-88 298.0 0.0 1.2e-88 297.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|292654416|ref|YP_003534313.1| - 0.0025 17.4 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|292654416|ref|YP_003534313.1| - 0.0047 17.6 0.1 0.014 16.1 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|292654416|ref|YP_003534313.1| - 0.0078 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|292654416|ref|YP_003534313.1| - 0.048 13.4 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Zn-ribbon_8 PF09723.10 gi|292654416|ref|YP_003534313.1| - 0.16 12.1 1.0 0.38 10.9 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain PrmA PF06325.13 gi|292654416|ref|YP_003534313.1| - 0.21 10.9 0.2 0.31 10.4 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Virul_fac_BrkB PF03631.15 gi|292654417|ref|YP_003534314.1| - 3.7e-41 141.5 25.3 3.7e-41 141.5 25.3 2.1 2 0 0 2 2 2 1 Virulence factor BrkB CENP-F_leu_zip PF10473.9 gi|292654417|ref|YP_003534314.1| - 0.056 13.5 0.2 0.091 12.8 0.2 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MDMPI_N PF11716.8 gi|292654417|ref|YP_003534314.1| - 0.064 13.9 4.4 0.13 13.0 4.4 1.4 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain ABC_tran_CTD PF16326.5 gi|292654417|ref|YP_003534314.1| - 0.11 12.7 0.5 0.11 12.7 0.5 1.8 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF2207 PF09972.9 gi|292654417|ref|YP_003534314.1| - 1.3 7.7 0.0 1.3 7.7 0.0 3.5 2 1 1 3 3 3 0 Predicted membrane protein (DUF2207) PAP2 PF01569.21 gi|292654418|ref|YP_003534315.1| - 4.4e-16 58.9 4.4 4.4e-16 58.9 4.4 3.1 2 2 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|292654418|ref|YP_003534315.1| - 2.5e-09 37.1 7.6 2.5e-09 37.1 7.6 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|292654418|ref|YP_003534315.1| - 0.014 15.9 2.8 0.015 15.8 0.4 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Gln-synt_C PF00120.24 gi|292654419|ref|YP_003534316.1| - 4.9e-139 463.1 0.0 6e-139 462.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|292654419|ref|YP_003534316.1| - 3.9e-31 106.6 0.9 2.6e-30 104.0 0.0 2.4 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|292654419|ref|YP_003534316.1| - 0.00071 19.4 0.0 0.0054 16.5 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain AsnC_trans_reg PF01037.21 gi|292654420|ref|YP_003534317.1| - 4.5e-13 49.0 0.0 7.9e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|292654420|ref|YP_003534317.1| - 3.2e-12 45.8 0.1 7.3e-12 44.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292654420|ref|YP_003534317.1| - 2.2e-08 33.9 0.1 4.2e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|292654420|ref|YP_003534317.1| - 2.4e-08 33.7 0.3 4.4e-08 32.8 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|292654420|ref|YP_003534317.1| - 4.3e-07 29.9 0.3 1.9e-06 27.8 0.1 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292654420|ref|YP_003534317.1| - 8.5e-07 28.8 0.1 3e-06 27.1 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|292654420|ref|YP_003534317.1| - 5.9e-05 23.1 0.0 0.00021 21.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|292654420|ref|YP_003534317.1| - 6.8e-05 22.7 0.0 0.00016 21.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|292654420|ref|YP_003534317.1| - 7.4e-05 22.3 0.0 0.00017 21.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|292654420|ref|YP_003534317.1| - 0.00014 21.5 0.1 0.00044 19.9 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|292654420|ref|YP_003534317.1| - 0.00016 21.4 0.1 0.00044 20.0 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|292654420|ref|YP_003534317.1| - 0.00016 21.6 0.0 0.00029 20.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|292654420|ref|YP_003534317.1| - 0.00023 21.0 0.1 0.00091 19.1 0.0 2.0 3 0 0 3 3 2 1 MarR family MarR_2 PF12802.7 gi|292654420|ref|YP_003534317.1| - 0.00025 20.9 0.1 0.0011 18.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|292654420|ref|YP_003534317.1| - 0.0015 18.2 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|292654420|ref|YP_003534317.1| - 0.004 17.3 0.0 0.0086 16.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_50 PF18024.1 gi|292654420|ref|YP_003534317.1| - 0.0044 16.6 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|292654420|ref|YP_003534317.1| - 0.0062 17.1 0.0 0.025 15.1 0.0 1.9 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_38 PF13936.6 gi|292654420|ref|YP_003534317.1| - 0.0067 16.2 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|292654420|ref|YP_003534317.1| - 0.0095 16.4 0.2 0.073 13.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|292654420|ref|YP_003534317.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|292654420|ref|YP_003534317.1| - 0.019 14.5 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|292654420|ref|YP_003534317.1| - 0.032 13.6 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|292654420|ref|YP_003534317.1| - 0.039 14.0 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix GYD PF08734.11 gi|292654420|ref|YP_003534317.1| - 0.04 13.9 0.1 0.077 12.9 0.0 1.6 2 0 0 2 2 1 0 GYD domain Rrf2 PF02082.20 gi|292654420|ref|YP_003534317.1| - 0.051 13.9 0.0 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_41 PF14502.6 gi|292654420|ref|YP_003534317.1| - 0.053 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|292654420|ref|YP_003534317.1| - 0.062 14.0 0.2 1.1 10.0 0.0 2.3 2 1 0 2 2 2 0 Replication protein A C terminal HTH_40 PF14493.6 gi|292654420|ref|YP_003534317.1| - 0.064 13.7 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|292654420|ref|YP_003534317.1| - 0.068 13.1 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|292654420|ref|YP_003534317.1| - 0.081 12.5 0.1 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_CodY PF08222.11 gi|292654420|ref|YP_003534317.1| - 0.084 12.4 0.1 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_1 PF00126.27 gi|292654420|ref|YP_003534317.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.6 gi|292654420|ref|YP_003534317.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|292654420|ref|YP_003534317.1| - 0.13 12.3 0.0 0.34 11.0 0.0 1.7 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain Ogr_Delta PF04606.12 gi|292654421|ref|YP_003534318.1| - 0.043 13.8 0.6 0.22 11.5 0.1 1.9 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PyrI_C PF02748.15 gi|292654421|ref|YP_003534318.1| - 0.046 13.6 0.1 0.049 13.5 0.1 1.1 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-Di19 PF05605.12 gi|292654421|ref|YP_003534318.1| - 0.064 13.6 0.1 0.087 13.1 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peptidase_M29 PF02073.15 gi|292654422|ref|YP_003534319.1| - 3.3e-69 233.6 0.0 3.8e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.23 gi|292654422|ref|YP_003534319.1| - 0.02 14.8 0.0 0.052 13.5 0.0 1.8 1 0 0 1 1 1 0 Peptidase S24-like UPF0146 PF03686.13 gi|292654422|ref|YP_003534319.1| - 0.042 13.7 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DUF2111 PF09884.9 gi|292654422|ref|YP_003534319.1| - 0.053 13.6 0.0 0.17 12.0 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) Beta_elim_lyase PF01212.21 gi|292654423|ref|YP_003534320.1| - 3.7e-87 292.3 0.4 4.6e-87 292.0 0.4 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|292654423|ref|YP_003534320.1| - 0.00026 20.4 0.1 0.0069 15.7 0.0 2.5 3 0 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|292654423|ref|YP_003534320.1| - 0.031 12.8 0.0 0.049 12.2 0.0 1.4 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cytomega_US3 PF05963.11 gi|292654423|ref|YP_003534320.1| - 0.18 11.4 0.1 0.8 9.3 0.0 1.9 2 0 0 2 2 2 0 Cytomegalovirus US3 protein Cation_efflux PF01545.21 gi|292654424|ref|YP_003534321.1| - 5.7e-27 94.7 4.1 9.8e-27 94.0 4.1 1.4 1 1 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|292654424|ref|YP_003534321.1| - 1.7e-10 40.9 1.0 2.7e-10 40.2 1.0 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter PMT_2 PF13231.6 gi|292654424|ref|YP_003534321.1| - 0.072 13.3 0.7 0.2 11.9 0.7 1.7 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase TrbC PF04956.13 gi|292654424|ref|YP_003534321.1| - 0.15 12.3 3.3 0.46 10.7 3.3 1.8 1 0 0 1 1 1 0 TrbC/VIRB2 family CopD PF05425.13 gi|292654424|ref|YP_003534321.1| - 1.7 9.1 11.6 0.052 14.0 3.0 2.7 2 1 1 3 3 3 0 Copper resistance protein D Metallophos_2 PF12850.7 gi|292654425|ref|YP_003534322.1| - 5.6e-24 85.2 0.5 6.7e-24 84.9 0.5 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292654425|ref|YP_003534322.1| - 4.3e-07 30.6 1.3 0.00063 20.3 0.3 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_20 PF12840.7 gi|292654426|ref|YP_003534323.1| - 1e-12 47.9 1.0 3.1e-12 46.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292654426|ref|YP_003534323.1| - 9.2e-08 31.9 0.0 2.5e-07 30.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292654426|ref|YP_003534323.1| - 3.1e-05 23.8 0.0 5e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292654426|ref|YP_003534323.1| - 0.00029 20.3 0.0 0.00056 19.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292654426|ref|YP_003534323.1| - 0.0074 16.2 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|292654426|ref|YP_003534323.1| - 0.016 15.1 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2513 PF10711.9 gi|292654426|ref|YP_003534323.1| - 0.028 14.7 0.0 0.053 13.8 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_Crp_2 PF13545.6 gi|292654426|ref|YP_003534323.1| - 0.063 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|292654426|ref|YP_003534323.1| - 0.085 13.2 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PHO4 PF01384.20 gi|292654428|ref|YP_003534325.1| - 1.2e-45 156.1 34.7 1.2e-45 156.1 34.7 1.4 1 1 0 1 1 1 1 Phosphate transporter family WBS28 PF15164.6 gi|292654429|ref|YP_003534326.1| - 0.23 10.7 4.1 0.26 10.5 4.1 1.0 1 0 0 1 1 1 0 Williams-Beuren syndrome chromosomal region 28 protein homologue DUF21 PF01595.20 gi|292654430|ref|YP_003534327.1| - 3.1e-48 163.8 1.2 4.4e-48 163.3 1.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|292654430|ref|YP_003534327.1| - 3e-22 78.4 1.2 7.8e-22 77.1 1.2 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|292654430|ref|YP_003534327.1| - 1.1e-11 45.0 3.3 2.9e-05 24.4 0.1 2.6 2 0 0 2 2 2 2 CBS domain Rrp44_S1 PF17215.3 gi|292654430|ref|YP_003534327.1| - 0.012 15.6 0.1 3.1 7.8 0.1 2.5 2 0 0 2 2 2 0 S1 domain GST_N_3 PF13417.6 gi|292654431|ref|YP_003534328.1| - 1.1e-15 57.7 0.0 1.2e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|292654431|ref|YP_003534328.1| - 5.2e-13 49.1 0.0 6.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|292654431|ref|YP_003534328.1| - 1.9e-12 47.2 0.0 2.6e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.20 gi|292654431|ref|YP_003534328.1| - 0.00019 21.7 0.0 0.00022 21.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Tom37 PF10568.9 gi|292654431|ref|YP_003534328.1| - 0.093 13.0 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein DUF836 PF05768.14 gi|292654431|ref|YP_003534328.1| - 0.14 12.6 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|292654432|ref|YP_003534329.1| - 1.2e-15 57.5 0.0 1.5e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|292654432|ref|YP_003534329.1| - 7.2e-08 32.3 0.0 1.5e-07 31.2 0.0 1.5 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|292654432|ref|YP_003534329.1| - 0.0073 16.4 0.0 0.34 11.0 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.18 gi|292654433|ref|YP_003534330.1| - 5e-50 169.5 0.0 5.7e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Cas_Cas4 PF01930.17 gi|292654434|ref|YP_003534331.1| - 0.0073 16.4 0.0 0.077 13.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 DUF3135 PF11333.8 gi|292654434|ref|YP_003534331.1| - 0.085 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) Spermine_synth PF01564.17 gi|292654435|ref|YP_003534332.1| - 3.2e-12 46.2 0.0 4.8e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|292654435|ref|YP_003534332.1| - 0.0028 18.3 0.0 0.01 16.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|292654435|ref|YP_003534332.1| - 0.007 15.7 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_30 PF05430.11 gi|292654435|ref|YP_003534332.1| - 0.011 15.7 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|292654435|ref|YP_003534332.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Phage_integrase PF00589.22 gi|292654438|ref|YP_003534335.1| - 1.2e-08 34.9 0.0 3.2e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|292654438|ref|YP_003534335.1| - 0.024 15.0 0.0 0.05 13.9 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|292654438|ref|YP_003534335.1| - 0.12 12.9 0.0 0.51 10.8 0.0 2.0 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain HTH_Crp_2 PF13545.6 gi|292654440|ref|YP_003534337.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|292654440|ref|YP_003534337.1| - 0.0029 17.5 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|292654440|ref|YP_003534337.1| - 0.0072 16.3 0.0 0.0083 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix AbiEi_4 PF13338.6 gi|292654440|ref|YP_003534337.1| - 0.0073 16.4 0.1 0.019 15.1 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_5 PF01022.20 gi|292654440|ref|YP_003534337.1| - 0.0081 16.0 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292654440|ref|YP_003534337.1| - 0.0086 16.1 0.2 0.031 14.3 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292654440|ref|YP_003534337.1| - 0.0093 15.9 0.1 0.019 14.9 0.1 1.7 1 1 0 1 1 1 1 HTH domain MarR PF01047.22 gi|292654440|ref|YP_003534337.1| - 0.0094 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|292654440|ref|YP_003534337.1| - 0.019 15.2 0.1 0.06 13.6 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.10 gi|292654440|ref|YP_003534337.1| - 0.026 14.4 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Mrr_N PF14338.6 gi|292654440|ref|YP_003534337.1| - 0.048 13.8 0.3 0.14 12.3 0.0 1.8 1 1 1 2 2 2 0 Mrr N-terminal domain Replic_Relax PF13814.6 gi|292654440|ref|YP_003534337.1| - 0.052 13.6 0.0 0.061 13.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_1 PF00126.27 gi|292654440|ref|YP_003534337.1| - 0.065 13.2 1.2 0.16 11.9 1.2 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF505 PF04458.12 gi|292654440|ref|YP_003534337.1| - 0.078 11.3 0.0 0.078 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_28 PF13518.6 gi|292654440|ref|YP_003534337.1| - 0.095 12.8 0.3 0.46 10.7 0.3 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|292654440|ref|YP_003534337.1| - 0.16 11.7 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ANAPC2 PF08672.11 gi|292654440|ref|YP_003534337.1| - 0.17 12.4 0.0 0.29 11.7 0.0 1.4 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 DUF4747 PF15931.5 gi|292654442|ref|YP_003534339.1| - 8.5e-07 28.9 0.0 1.1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4747) PB1 PF00564.24 gi|292654442|ref|YP_003534339.1| - 0.22 11.5 0.7 0.83 9.6 0.2 2.1 1 1 1 2 2 2 0 PB1 domain SpoIIIAC PF06686.11 gi|292654444|ref|YP_003534341.1| - 0.0076 16.4 2.7 0.011 15.9 2.7 1.1 1 0 0 1 1 1 1 Stage III sporulation protein AC/AD protein family Tetraspanin PF00335.20 gi|292654444|ref|YP_003534341.1| - 0.035 13.8 0.0 0.04 13.6 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family Peptidase_U49 PF10463.9 gi|292654444|ref|YP_003534341.1| - 0.058 13.1 0.1 0.065 13.0 0.1 1.1 1 0 0 1 1 1 0 Peptidase U49 SPC25 PF06703.11 gi|292654444|ref|YP_003534341.1| - 3.7 7.3 8.1 15 5.3 5.8 2.0 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) HicA_toxin PF07927.12 gi|292654447|ref|YP_003534344.1| - 5.5e-17 61.6 0.0 6.4e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Rubredoxin_C PF18267.1 gi|292654449|ref|YP_003534346.1| - 0.006 16.5 0.0 0.0095 15.8 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain FxsA PF04186.13 gi|292654449|ref|YP_003534346.1| - 0.32 11.1 4.0 3.8 7.7 0.2 2.3 1 1 1 2 2 2 0 FxsA cytoplasmic membrane protein DUF4307 PF14155.6 gi|292654451|ref|YP_003534348.1| - 4.4 7.2 12.1 0.13 12.1 4.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4307) DUF2749 PF10907.8 gi|292654453|ref|YP_003534350.1| - 0.011 15.9 4.4 0.19 11.9 1.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Gram_pos_anchor PF00746.21 gi|292654453|ref|YP_003534350.1| - 0.053 13.5 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF3446 PF11928.8 gi|292654453|ref|YP_003534350.1| - 0.13 12.6 5.0 0.18 12.1 2.2 2.1 2 0 0 2 2 2 0 Early growth response N-terminal domain DUF3371 PF11851.8 gi|292654454|ref|YP_003534351.1| - 0.073 14.2 0.1 0.12 13.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3371) AAA_25 PF13481.6 gi|292654455|ref|YP_003534352.1| - 5e-06 26.2 1.7 0.0073 15.9 0.2 3.2 1 1 2 3 3 3 2 AAA domain AAA PF00004.29 gi|292654455|ref|YP_003534352.1| - 0.00037 20.9 0.0 0.0011 19.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|292654455|ref|YP_003534352.1| - 0.0014 18.0 0.2 0.0021 17.3 0.2 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_11 PF13086.6 gi|292654455|ref|YP_003534352.1| - 0.003 17.4 0.0 0.29 10.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|292654455|ref|YP_003534352.1| - 0.0063 16.3 1.1 0.014 15.1 1.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292654455|ref|YP_003534352.1| - 0.012 16.0 0.3 0.024 15.0 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|292654455|ref|YP_003534352.1| - 0.035 13.8 0.3 1 9.1 0.0 2.5 2 1 1 3 3 3 0 AAA domain RuvB_N PF05496.12 gi|292654455|ref|YP_003534352.1| - 0.042 13.6 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DDE_Tnp_1 PF01609.21 gi|292654456|ref|YP_003534353.1| - 1.6e-26 93.3 0.0 2.2e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292654456|ref|YP_003534353.1| - 0.0071 15.6 0.1 0.016 14.4 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.21 gi|292654457|ref|YP_003534354.1| - 4.7e-25 88.5 0.1 6.5e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292654457|ref|YP_003534354.1| - 0.007 15.6 0.1 0.016 14.4 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 ARL6IP6 PF15062.6 gi|292654458|ref|YP_003534355.1| - 0.094 12.9 0.0 0.099 12.8 0.0 1.0 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix Transposase_20 PF02371.16 gi|292654459|ref|YP_003534356.1| - 2.1e-20 72.8 0.0 6.5e-20 71.2 0.0 1.9 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|292654459|ref|YP_003534356.1| - 1.4e-18 67.2 1.9 3.7e-18 65.9 0.9 1.9 2 0 0 2 2 2 1 Transposase Zwint PF15556.6 gi|292654459|ref|YP_003534356.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 ZW10 interactor HTH_29 PF13551.6 gi|292654460|ref|YP_003534357.1| - 4.4e-05 23.4 0.3 0.00047 20.1 0.2 2.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|292654460|ref|YP_003534357.1| - 0.00014 21.5 0.6 0.0029 17.4 0.4 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|292654460|ref|YP_003534357.1| - 0.00092 18.7 0.0 0.0024 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|292654460|ref|YP_003534357.1| - 0.0095 16.0 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix DUF5448 PF17526.2 gi|292654460|ref|YP_003534357.1| - 0.038 14.1 0.0 16 5.7 0.0 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5448) HTH_11 PF08279.12 gi|292654460|ref|YP_003534357.1| - 0.041 13.8 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 HTH domain Sigma70_r3 PF04539.16 gi|292654460|ref|YP_003534357.1| - 0.051 13.7 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_28 PF13518.6 gi|292654460|ref|YP_003534357.1| - 0.071 13.3 0.1 1 9.6 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3268 PF11672.8 gi|292654462|ref|YP_003534359.1| - 4.7e-06 26.9 0.3 5.7e-06 26.7 0.3 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain DZR PF12773.7 gi|292654462|ref|YP_003534359.1| - 0.0066 16.4 0.9 0.01 15.9 0.3 1.6 2 0 0 2 2 2 1 Double zinc ribbon zf_C2HC_14 PF18574.1 gi|292654462|ref|YP_003534359.1| - 0.037 13.8 0.9 3.9 7.4 0.1 2.2 2 0 0 2 2 2 0 C2HC Zing finger domain RNA_POL_M_15KD PF02150.16 gi|292654462|ref|YP_003534359.1| - 0.071 13.0 1.8 1.9 8.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|292654462|ref|YP_003534359.1| - 0.3 10.6 0.2 0.3 10.6 0.2 2.2 3 0 0 3 3 3 0 zinc-ribbon domain CitMHS PF03600.16 gi|292654463|ref|YP_003534360.1| - 4.8e-61 206.6 2.2 4.8e-61 206.6 2.2 1.5 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|292654463|ref|YP_003534360.1| - 1.1e-20 73.2 3.7 4.8e-13 48.7 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|292654463|ref|YP_003534360.1| - 5.5e-19 68.6 35.6 1.8e-12 47.0 13.7 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF3810 PF12725.7 gi|292654463|ref|YP_003534360.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DEAD PF00270.29 gi|292654464|ref|YP_003534361.1| - 2.2e-23 82.9 0.0 4.5e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|292654464|ref|YP_003534361.1| - 5.2e-14 52.5 0.0 1.2e-13 51.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|292654464|ref|YP_003534361.1| - 1e-10 41.9 0.0 1.8e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cupin_2 PF07883.11 gi|292654465|ref|YP_003534362.1| - 6e-18 64.3 0.2 7.6e-18 64.0 0.2 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|292654465|ref|YP_003534362.1| - 6.8e-08 32.2 0.0 1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|292654465|ref|YP_003534362.1| - 3e-06 27.2 0.0 3.6e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|292654465|ref|YP_003534362.1| - 0.00012 22.0 0.0 0.00015 21.7 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|292654465|ref|YP_003534362.1| - 0.0021 17.7 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.14 gi|292654465|ref|YP_003534362.1| - 0.0063 16.7 0.0 0.0086 16.3 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family CENP-C_C PF11699.8 gi|292654465|ref|YP_003534362.1| - 0.011 16.0 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like CBS PF00571.28 gi|292654466|ref|YP_003534363.1| - 1.6e-22 79.7 5.0 6e-15 55.4 0.4 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|292654466|ref|YP_003534363.1| - 9.6e-14 51.3 10.7 4.1e-09 36.1 0.2 3.0 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|292654466|ref|YP_003534363.1| - 4e-06 26.6 1.2 4e-06 26.6 1.2 2.5 1 1 1 3 3 3 1 Peptidase M50B-like DUF3267 PF11667.8 gi|292654466|ref|YP_003534363.1| - 0.019 15.2 0.5 0.019 15.2 0.5 2.6 3 0 0 3 3 3 0 Putative zincin peptidase MoCF_biosynth PF00994.24 gi|292654467|ref|YP_003534364.1| - 1e-33 116.0 0.1 1.6e-33 115.4 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain LDcluster4 PF18306.1 gi|292654467|ref|YP_003534364.1| - 0.063 12.9 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 SLOG cluster4 family RHH_1 PF01402.21 gi|292654470|ref|YP_003534367.1| - 8.3e-05 22.4 0.2 8.3e-05 22.4 0.2 2.4 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|292654470|ref|YP_003534367.1| - 0.0034 17.0 0.1 0.0072 15.9 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|292654470|ref|YP_003534367.1| - 0.0053 17.3 0.0 0.012 16.2 0.0 1.6 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system DUF2353 PF09789.9 gi|292654470|ref|YP_003534367.1| - 0.025 13.9 1.3 0.028 13.8 1.3 1.2 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Noc2 PF03715.13 gi|292654470|ref|YP_003534367.1| - 0.08 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Noc2p family DUF4047 PF13256.6 gi|292654470|ref|YP_003534367.1| - 0.087 13.0 0.5 0.12 12.5 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) zf-Mss51 PF13824.6 gi|292654470|ref|YP_003534367.1| - 0.31 11.2 4.1 0.34 11.0 1.7 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RMI1_C PF16099.5 gi|292654472|ref|YP_003534369.1| - 0.16 11.8 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold DUF1668 PF07893.13 gi|292654473|ref|YP_003534370.1| - 0.0056 16.1 0.1 0.0064 15.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1668) NTP_transferase PF00483.23 gi|292654474|ref|YP_003534371.1| - 8.7e-40 136.9 0.0 2.1e-39 135.6 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|292654474|ref|YP_003534371.1| - 6.7e-09 36.3 5.5 2e-08 34.8 5.4 2.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|292654474|ref|YP_003534371.1| - 0.00017 21.5 0.2 0.0003 20.7 0.2 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase HALZ PF02183.18 gi|292654475|ref|YP_003534372.1| - 0.12 12.7 0.5 0.19 12.0 0.5 1.3 1 0 0 1 1 1 0 Homeobox associated leucine zipper adh_short_C2 PF13561.6 gi|292654476|ref|YP_003534373.1| - 4.3e-51 173.7 0.1 6.6e-51 173.1 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|292654476|ref|YP_003534373.1| - 1.5e-37 129.0 0.2 1.9e-37 128.6 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|292654476|ref|YP_003534373.1| - 2.1e-09 37.5 0.1 3.2e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|292654476|ref|YP_003534373.1| - 0.0077 16.1 0.3 0.013 15.4 0.3 1.4 1 0 0 1 1 1 1 NAD(P)H-binding TFX_C PF14601.6 gi|292654477|ref|YP_003534374.1| - 9.3e-32 108.8 0.1 1.3e-31 108.4 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|292654477|ref|YP_003534374.1| - 4e-05 23.1 0.4 4e-05 23.1 0.4 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|292654477|ref|YP_003534374.1| - 0.0014 18.2 0.1 0.0022 17.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|292654477|ref|YP_003534374.1| - 0.019 14.8 0.2 0.04 13.7 0.2 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|292654477|ref|YP_003534374.1| - 0.036 14.0 0.4 0.08 12.9 0.4 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|292654477|ref|YP_003534374.1| - 0.048 13.6 0.1 0.12 12.4 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_31 PF13560.6 gi|292654477|ref|YP_003534374.1| - 0.06 13.7 2.1 0.12 12.7 0.9 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|292654477|ref|YP_003534374.1| - 0.12 12.5 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix TRAM PF01938.20 gi|292654478|ref|YP_003534375.1| - 1.6e-09 37.6 0.4 2.3e-09 37.1 0.4 1.2 1 0 0 1 1 1 1 TRAM domain PilI PF10623.9 gi|292654478|ref|YP_003534375.1| - 0.11 12.6 0.0 0.3 11.3 0.0 1.6 2 0 0 2 2 2 0 Plasmid conjugative transfer protein PilI MASE2 PF05230.11 gi|292654479|ref|YP_003534376.1| - 0.5 10.5 9.1 0.55 10.3 0.2 3.2 2 1 1 3 3 3 0 MASE2 domain Holin_9 PF16936.5 gi|292654479|ref|YP_003534376.1| - 9 6.5 20.5 2.4 8.4 0.2 4.2 4 2 1 5 5 5 0 Putative holin Radical_SAM PF04055.21 gi|292654480|ref|YP_003534377.1| - 6.6e-06 26.6 0.6 0.00018 22.0 0.2 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|292654480|ref|YP_003534377.1| - 6.6e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|292654480|ref|YP_003534377.1| - 0.058 13.7 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain PAS_3 PF08447.12 gi|292654481|ref|YP_003534378.1| - 1.9e-18 66.5 0.1 6.4e-12 45.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|292654481|ref|YP_003534378.1| - 1.4e-13 50.9 0.4 2.4e-07 30.8 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|292654481|ref|YP_003534378.1| - 1.9e-13 50.5 0.3 1.2e-07 32.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|292654481|ref|YP_003534378.1| - 2.4e-13 50.6 0.0 4.9e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|292654481|ref|YP_003534378.1| - 2.7e-13 50.1 0.0 8.4e-13 48.5 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|292654481|ref|YP_003534378.1| - 6.3e-10 38.8 0.4 0.001 19.1 0.1 3.2 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|292654481|ref|YP_003534378.1| - 1.7e-09 37.9 0.9 0.0013 19.0 0.1 3.3 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|292654481|ref|YP_003534378.1| - 6.2e-08 32.6 1.7 2.5e-07 30.6 1.7 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|292654481|ref|YP_003534378.1| - 0.013 15.4 0.5 0.44 10.5 0.0 2.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|292654481|ref|YP_003534378.1| - 0.016 14.9 0.0 0.18 11.4 0.0 2.2 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain PAS_11 PF14598.6 gi|292654481|ref|YP_003534378.1| - 0.076 13.2 0.0 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 PAS domain DUF373 PF04123.13 gi|292654482|ref|YP_003534379.1| - 4.2e-119 397.9 5.5 5.1e-119 397.6 5.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) polyprenyl_synt PF00348.17 gi|292654483|ref|YP_003534380.1| - 2.9e-54 183.8 0.0 3.5e-54 183.5 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Pertus-S4-tox PF09275.10 gi|292654483|ref|YP_003534380.1| - 0.085 13.1 0.1 0.23 11.7 0.1 1.7 2 0 0 2 2 2 0 Pertussis toxin S4 subunit ETF_alpha PF00766.19 gi|292654484|ref|YP_003534381.1| - 4.3e-37 126.0 0.5 1.5e-36 124.2 0.2 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|292654484|ref|YP_003534381.1| - 8.4e-31 107.3 1.4 1.4e-30 106.5 1.4 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|292654485|ref|YP_003534382.1| - 2.4e-41 141.6 2.9 3.3e-41 141.2 2.9 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain HTH_15 PF12324.8 gi|292654486|ref|YP_003534383.1| - 0.002 18.0 3.1 0.26 11.3 0.0 2.9 2 1 0 2 2 2 2 Helix-turn-helix domain of alkylmercury lyase HTH_IclR PF09339.10 gi|292654486|ref|YP_003534383.1| - 0.024 14.4 0.0 0.099 12.5 0.0 2.0 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292654486|ref|YP_003534383.1| - 0.051 13.5 0.1 0.69 9.8 0.0 2.5 2 0 0 2 2 2 0 MarR family DUF4360 PF14273.6 gi|292654486|ref|YP_003534383.1| - 0.1 12.5 0.9 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4360) Mod_r PF07200.13 gi|292654487|ref|YP_003534384.1| - 0.025 14.7 0.5 0.037 14.1 0.5 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Pilin_N PF07790.11 gi|292654488|ref|YP_003534385.1| - 3.5e-07 31.0 0.2 1e-06 29.6 0.1 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal LEA_2 PF03168.13 gi|292654488|ref|YP_003534385.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.8 1 1 0 1 1 1 0 Late embryogenesis abundant protein Methyltransf_11 PF08241.12 gi|292654489|ref|YP_003534386.1| - 8e-23 80.9 0.0 1.2e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292654489|ref|YP_003534386.1| - 8.5e-21 74.5 0.0 1.5e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654489|ref|YP_003534386.1| - 1.5e-16 60.5 0.0 1.9e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292654489|ref|YP_003534386.1| - 2.7e-16 59.6 0.0 4.8e-13 49.0 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|292654489|ref|YP_003534386.1| - 8e-14 51.8 0.0 1.5e-13 50.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292654489|ref|YP_003534386.1| - 7.3e-13 49.1 0.0 1.1e-12 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|292654489|ref|YP_003534386.1| - 4e-06 26.1 0.0 5.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|292654489|ref|YP_003534386.1| - 4.9e-06 26.4 0.0 8.1e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|292654489|ref|YP_003534386.1| - 5e-06 26.0 0.0 6.8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|292654489|ref|YP_003534386.1| - 0.00012 21.7 0.0 0.00024 20.8 0.0 1.5 1 1 1 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|292654489|ref|YP_003534386.1| - 0.0035 16.3 0.0 0.0048 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|292654489|ref|YP_003534386.1| - 0.0089 15.6 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|292654489|ref|YP_003534386.1| - 0.019 13.6 0.0 0.024 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|292654489|ref|YP_003534386.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.4 1 1 0 1 1 1 0 O-methyltransferase domain NodS PF05401.11 gi|292654489|ref|YP_003534386.1| - 0.024 14.3 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Cons_hypoth95 PF03602.15 gi|292654489|ref|YP_003534386.1| - 0.094 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|292654489|ref|YP_003534386.1| - 0.24 10.8 0.1 0.36 10.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) V-ATPase_G_2 PF16999.5 gi|292654490|ref|YP_003534387.1| - 8.6e-08 32.6 22.5 1.3e-07 32.0 22.5 1.3 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|292654490|ref|YP_003534387.1| - 0.0011 19.1 25.5 0.0036 17.4 24.9 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF885 PF05960.11 gi|292654490|ref|YP_003534387.1| - 0.0035 17.0 9.4 0.0038 17.0 9.4 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) DivIVA PF05103.13 gi|292654490|ref|YP_003534387.1| - 0.0054 16.8 16.0 0.013 15.5 10.6 2.1 1 1 1 2 2 2 1 DivIVA protein HrpE PF06188.12 gi|292654490|ref|YP_003534387.1| - 0.019 14.8 8.3 0.024 14.5 8.3 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E OmpH PF03938.14 gi|292654490|ref|YP_003534387.1| - 0.074 13.4 12.8 0.089 13.1 12.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF3552 PF12072.8 gi|292654490|ref|YP_003534387.1| - 0.08 12.3 23.3 0.24 10.8 23.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.15 gi|292654490|ref|YP_003534387.1| - 0.11 13.0 18.6 0.24 11.9 18.6 1.6 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF2240 PF09999.9 gi|292654490|ref|YP_003534387.1| - 0.15 11.7 7.2 0.084 12.5 3.8 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) Ish1 PF10281.9 gi|292654490|ref|YP_003534387.1| - 0.16 12.3 0.5 13 6.2 0.0 2.3 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein DUF883 PF05957.13 gi|292654490|ref|YP_003534387.1| - 0.34 11.5 14.4 1.9 9.1 3.7 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|292654490|ref|YP_003534387.1| - 0.83 10.2 11.1 2.3e+02 2.4 11.1 2.3 1 1 0 1 1 1 0 YtxH-like protein Caudo_TAP PF02413.17 gi|292654490|ref|YP_003534387.1| - 0.84 9.8 11.6 2.7 8.2 8.1 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK Spc7 PF08317.11 gi|292654490|ref|YP_003534387.1| - 1.5 7.7 12.6 1.7 7.4 12.6 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein PRKCSH-like PF12999.7 gi|292654490|ref|YP_003534387.1| - 1.5 8.6 6.2 5.8 6.7 3.0 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like ERp29 PF07749.12 gi|292654490|ref|YP_003534387.1| - 2.6 9.0 8.1 6.8 7.7 5.3 2.3 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain DUF615 PF04751.14 gi|292654490|ref|YP_003534387.1| - 2.6 8.0 12.5 4.5 7.2 5.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF615) V_ATPase_I PF01496.19 gi|292654491|ref|YP_003534388.1| - 2e-21 75.7 6.2 7.4e-13 47.3 0.2 3.3 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.8 gi|292654491|ref|YP_003534388.1| - 0.034 14.2 1.3 3.8 7.6 0.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Tektin PF03148.14 gi|292654491|ref|YP_003534388.1| - 0.072 11.8 0.5 2.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Tektin family DUF4140 PF13600.6 gi|292654491|ref|YP_003534388.1| - 0.076 13.5 3.9 0.58 10.6 0.5 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.20 gi|292654491|ref|YP_003534388.1| - 0.13 12.2 2.8 5.6 7.0 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit APG6_N PF17675.1 gi|292654491|ref|YP_003534388.1| - 0.14 12.6 8.7 2.8 8.5 1.9 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|292654491|ref|YP_003534388.1| - 0.17 11.9 4.3 3.4 7.7 0.1 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nmad5 PF18757.1 gi|292654491|ref|YP_003534388.1| - 0.18 12.0 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 Nucleotide modification associated domain 5 Seryl_tRNA_N PF02403.22 gi|292654491|ref|YP_003534388.1| - 0.57 10.4 3.5 0.99 9.7 0.3 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med4 PF10018.9 gi|292654491|ref|YP_003534388.1| - 0.64 9.7 3.0 16 5.1 0.1 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nas2_N PF18265.1 gi|292654491|ref|YP_003534388.1| - 0.65 10.0 1.9 21 5.1 0.4 2.3 2 0 0 2 2 2 0 Nas2 N_terminal domain XhlA PF10779.9 gi|292654491|ref|YP_003534388.1| - 1.5 9.1 4.2 21 5.4 0.3 2.5 2 0 0 2 2 2 0 Haemolysin XhlA FlaC_arch PF05377.11 gi|292654491|ref|YP_003534388.1| - 1.7 9.1 4.6 7.7 7.0 0.3 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) CCDC-167 PF15188.6 gi|292654491|ref|YP_003534388.1| - 3.2 8.2 7.2 10 6.5 1.8 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 ATP-synt_C PF00137.21 gi|292654492|ref|YP_003534389.1| - 5.9e-12 45.8 7.5 7.7e-12 45.4 7.5 1.2 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|292654493|ref|YP_003534390.1| - 4.7e-51 173.0 11.0 5.3e-51 172.9 11.0 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|292654493|ref|YP_003534390.1| - 0.00095 19.3 18.2 0.00095 19.3 18.2 2.1 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|292654493|ref|YP_003534390.1| - 0.14 11.5 19.6 0.22 10.9 19.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Tmemb_9 PF05434.11 gi|292654493|ref|YP_003534390.1| - 0.28 11.1 3.2 0.52 10.2 3.2 1.4 1 0 0 1 1 1 0 TMEM9 V_ATPase_I PF01496.19 gi|292654493|ref|YP_003534390.1| - 0.81 7.5 2.0 0.83 7.5 2.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family V-ATPase_G_2 PF16999.5 gi|292654493|ref|YP_003534390.1| - 0.9 10.0 23.3 0.83 10.1 21.7 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit YtxH PF12732.7 gi|292654493|ref|YP_003534390.1| - 3 8.4 9.1 0.77 10.3 1.9 2.6 2 1 1 3 3 3 0 YtxH-like protein M PF02370.16 gi|292654493|ref|YP_003534390.1| - 4 8.3 9.5 59 4.7 1.6 3.9 3 1 0 3 3 3 0 M protein repeat DivIVA PF05103.13 gi|292654493|ref|YP_003534390.1| - 4.4 7.4 15.3 78 3.4 15.2 2.4 1 1 0 1 1 1 0 DivIVA protein HrpE PF06188.12 gi|292654493|ref|YP_003534390.1| - 4.8 7.0 16.3 11 5.8 16.3 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Spc7 PF08317.11 gi|292654493|ref|YP_003534390.1| - 6.2 5.6 14.6 8.7 5.1 14.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein rRNA_processing PF08524.11 gi|292654493|ref|YP_003534390.1| - 8 6.5 10.5 12 6.0 10.5 1.2 1 0 0 1 1 1 0 rRNA processing DUF883 PF05957.13 gi|292654493|ref|YP_003534390.1| - 9.7 6.9 18.8 2.5 8.8 1.3 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.16 gi|292654494|ref|YP_003534391.1| - 2.6e-79 267.2 1.2 2.9e-79 267.0 1.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|292654495|ref|YP_003534392.1| - 6.9e-17 61.6 0.0 7.7e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|292654496|ref|YP_003534393.1| - 1.5e-92 309.0 0.0 2.2e-92 308.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|292654496|ref|YP_003534393.1| - 4.9e-39 132.9 0.0 8.6e-39 132.1 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|292654496|ref|YP_003534393.1| - 2.7e-12 47.0 3.7 2.7e-12 47.0 3.7 2.5 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|292654496|ref|YP_003534393.1| - 0.028 14.7 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain QRPTase_N PF02749.16 gi|292654496|ref|YP_003534393.1| - 0.078 13.0 0.4 14 5.8 0.0 3.1 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M23 PF01551.22 gi|292654496|ref|YP_003534393.1| - 0.09 13.0 0.7 7.8 6.8 0.0 2.8 3 0 0 3 3 3 0 Peptidase family M23 RnfC_N PF13375.6 gi|292654496|ref|YP_003534393.1| - 0.16 11.9 2.3 13 5.8 0.1 3.1 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.25 gi|292654497|ref|YP_003534394.1| - 1.3e-65 221.0 0.0 1.7e-65 220.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|292654497|ref|YP_003534394.1| - 2.1e-14 53.8 0.5 5.3e-14 52.5 0.5 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|292654497|ref|YP_003534394.1| - 0.0028 17.8 0.3 0.013 15.6 0.3 2.3 1 0 0 1 1 1 1 HAS barrel domain Crystallin PF00525.18 gi|292654497|ref|YP_003534394.1| - 0.12 12.5 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Alpha crystallin A chain, N terminal BAT PF15915.5 gi|292654498|ref|YP_003534395.1| - 2.9e-29 102.0 9.7 2.9e-29 102.0 9.7 3.2 3 0 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|292654498|ref|YP_003534395.1| - 2.7e-22 79.0 0.0 6.9e-22 77.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HTH_10 PF04967.12 gi|292654498|ref|YP_003534395.1| - 1.9e-19 69.2 0.0 3.6e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|292654498|ref|YP_003534395.1| - 3.7e-12 46.3 0.0 1.2e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|292654498|ref|YP_003534395.1| - 2.8e-10 40.4 5.9 6.3e-10 39.3 0.1 3.6 4 0 0 4 4 3 1 PAS fold GAF_2 PF13185.6 gi|292654498|ref|YP_003534395.1| - 1.2e-09 38.5 0.3 5e-09 36.6 0.3 2.1 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|292654498|ref|YP_003534395.1| - 5e-07 29.9 0.0 1.2e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|292654498|ref|YP_003534395.1| - 1.9e-06 27.8 0.0 1.1e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|292654498|ref|YP_003534395.1| - 2.9e-05 24.4 0.0 8.9e-05 22.8 0.0 1.9 1 0 0 1 1 1 1 GAF domain HTH_11 PF08279.12 gi|292654498|ref|YP_003534395.1| - 0.00079 19.3 0.0 0.0038 17.1 0.0 2.0 2 0 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.16 gi|292654498|ref|YP_003534395.1| - 0.0044 16.5 0.0 0.01 15.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GAF PF01590.26 gi|292654498|ref|YP_003534395.1| - 0.024 15.3 0.7 0.079 13.6 0.1 2.3 3 0 0 3 3 2 0 GAF domain Sigma70_r4_2 PF08281.12 gi|292654498|ref|YP_003534395.1| - 0.033 13.9 0.3 0.14 11.8 0.1 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 TetR_N PF00440.23 gi|292654498|ref|YP_003534395.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|292654498|ref|YP_003534395.1| - 0.19 11.9 0.0 0.44 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase ATP-synt_D PF01813.17 gi|292654499|ref|YP_003534396.1| - 8.8e-55 185.6 11.5 1.3e-54 185.0 11.5 1.3 1 0 0 1 1 1 1 ATP synthase subunit D eRF1_2 PF03464.15 gi|292654501|ref|YP_003534398.1| - 9.3e-42 142.5 0.0 2.3e-41 141.2 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|292654501|ref|YP_003534398.1| - 4.7e-27 94.7 0.5 1.2e-26 93.4 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|292654501|ref|YP_003534398.1| - 6.6e-18 65.2 0.0 2.8e-17 63.2 0.1 2.0 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|292654501|ref|YP_003534398.1| - 3.5e-14 53.2 0.0 9.5e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|292654501|ref|YP_003534398.1| - 4.5e-10 39.6 0.0 6.9e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|292654501|ref|YP_003534398.1| - 0.0023 18.5 0.0 0.006 17.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 CbiA PF01656.23 gi|292654502|ref|YP_003534399.1| - 1.9e-17 63.5 0.3 3.8e-17 62.5 0.3 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|292654502|ref|YP_003534399.1| - 1.1e-16 61.3 0.0 1.7e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|292654502|ref|YP_003534399.1| - 5.3e-15 55.5 6.7 1.9e-13 50.5 6.7 2.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|292654502|ref|YP_003534399.1| - 9.1e-09 35.1 0.1 0.00022 20.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|292654502|ref|YP_003534399.1| - 6.9e-08 32.3 0.1 4.9e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|292654502|ref|YP_003534399.1| - 1.6e-05 24.2 0.8 0.00015 21.0 0.8 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|292654502|ref|YP_003534399.1| - 0.00022 20.6 2.9 0.0052 16.1 2.9 2.4 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|292654502|ref|YP_003534399.1| - 0.00058 19.8 0.5 0.00058 19.8 0.5 2.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|292654502|ref|YP_003534399.1| - 0.0014 18.4 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Trypan_PARP PF05887.11 gi|292654502|ref|YP_003534399.1| - 0.0071 16.3 20.9 0.0071 16.3 20.9 5.0 1 1 3 4 4 2 2 Procyclic acidic repetitive protein (PARP) VirC1 PF07015.11 gi|292654502|ref|YP_003534399.1| - 0.016 14.5 0.6 0.037 13.3 0.2 1.7 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 gi|292654502|ref|YP_003534399.1| - 0.02 14.7 0.1 0.05 13.4 0.1 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glyco_transf_4 PF13439.6 gi|292654502|ref|YP_003534399.1| - 0.031 14.3 0.0 3.3 7.7 0.0 2.7 2 1 1 3 3 3 0 Glycosyltransferase Family 4 SRP54 PF00448.22 gi|292654502|ref|YP_003534399.1| - 0.3 10.7 5.0 0.95 9.1 0.6 2.8 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|292654502|ref|YP_003534399.1| - 0.45 9.5 5.1 0.8 8.6 3.4 2.1 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF1467 PF07330.12 gi|292654503|ref|YP_003534400.1| - 0.55 10.2 3.8 0.58 10.1 3.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1467) tRNA-synt_1d PF00750.19 gi|292654504|ref|YP_003534401.1| - 7.2e-36 123.8 0.0 9.9e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|292654504|ref|YP_003534401.1| - 2.8e-35 121.0 0.0 9e-35 119.4 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|292654504|ref|YP_003534401.1| - 4.1e-10 40.1 0.0 2e-09 37.9 0.0 2.2 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|292654504|ref|YP_003534401.1| - 9.5e-05 21.5 0.0 0.26 10.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) PhnA_Zn_Ribbon PF08274.12 gi|292654505|ref|YP_003534402.1| - 0.0051 16.7 0.2 0.012 15.5 0.2 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_9 PF14369.6 gi|292654505|ref|YP_003534402.1| - 0.0094 16.2 2.7 0.074 13.3 0.1 2.2 1 1 1 2 2 2 1 zinc-ribbon zf-ACC PF17848.1 gi|292654505|ref|YP_003534402.1| - 0.031 14.4 1.0 3.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF3268 PF11672.8 gi|292654505|ref|YP_003534402.1| - 0.065 13.6 0.9 0.14 12.5 0.9 1.6 1 1 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|292654505|ref|YP_003534402.1| - 0.07 13.3 0.9 0.12 12.5 0.9 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HE PF16278.5 gi|292654505|ref|YP_003534402.1| - 0.25 11.8 1.7 0.69 10.4 0.3 1.9 2 0 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger CTP-dep_RFKase PF01982.16 gi|292654506|ref|YP_003534403.1| - 7.7e-46 155.1 0.0 1.1e-45 154.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|292654506|ref|YP_003534403.1| - 4.4e-07 29.9 0.0 1e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292654506|ref|YP_003534403.1| - 2e-05 24.4 0.2 7.7e-05 22.5 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|292654506|ref|YP_003534403.1| - 0.00011 21.7 0.0 0.00023 20.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292654506|ref|YP_003534403.1| - 0.00033 20.5 0.0 0.00053 19.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|292654506|ref|YP_003534403.1| - 0.001 19.0 0.1 0.0025 17.8 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|292654506|ref|YP_003534403.1| - 0.0015 18.4 0.0 0.0035 17.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|292654506|ref|YP_003534403.1| - 0.02 14.6 0.1 0.037 13.8 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|292654506|ref|YP_003534403.1| - 0.025 14.8 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|292654506|ref|YP_003534403.1| - 0.03 14.1 0.0 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 gi|292654506|ref|YP_003534403.1| - 0.031 14.2 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|292654506|ref|YP_003534403.1| - 0.031 14.1 0.2 0.031 14.1 0.2 2.1 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|292654506|ref|YP_003534403.1| - 0.032 14.7 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|292654506|ref|YP_003534403.1| - 0.051 13.5 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain RNase_II_C_S1 PF18614.1 gi|292654506|ref|YP_003534403.1| - 0.4 10.7 3.8 2.8 8.0 0.1 3.2 4 0 0 4 4 3 0 RNase II-type exonuclease C-terminal S1 domain DHBP_synthase PF00926.19 gi|292654507|ref|YP_003534404.1| - 3.3e-55 186.6 0.0 3.9e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Epimerase PF01370.21 gi|292654508|ref|YP_003534405.1| - 3.1e-20 72.6 0.1 4.5e-20 72.2 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292654508|ref|YP_003534405.1| - 1.2e-14 54.5 0.5 6.1e-11 42.3 0.1 2.4 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|292654508|ref|YP_003534405.1| - 6.5e-09 35.9 1.1 1.9e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|292654508|ref|YP_003534405.1| - 2.3e-07 30.1 0.0 4.2e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|292654508|ref|YP_003534405.1| - 3.3e-06 26.4 0.1 4.6e-06 25.9 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 gi|292654508|ref|YP_003534405.1| - 2.7e-05 24.2 0.2 0.22 11.4 0.1 2.4 1 1 1 2 2 2 2 KR domain NAD_binding_4 PF07993.12 gi|292654508|ref|YP_003534405.1| - 5.4e-05 22.5 0.0 0.0083 15.3 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|292654508|ref|YP_003534405.1| - 0.001 18.2 0.3 0.15 11.2 0.4 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|292654508|ref|YP_003534405.1| - 0.0029 17.2 0.1 0.0045 16.6 0.1 1.5 1 0 0 1 1 1 1 NmrA-like family LpxI_N PF17930.1 gi|292654508|ref|YP_003534405.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 LpxI N-terminal domain Aminotran_4 PF01063.19 gi|292654509|ref|YP_003534406.1| - 2.3e-50 171.5 0.0 2.7e-50 171.3 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Nif11 PF07862.11 gi|292654509|ref|YP_003534406.1| - 0.085 13.2 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Nif11 domain DUF502 PF04367.13 gi|292654510|ref|YP_003534407.1| - 1.5e-19 69.8 1.5 3e-19 68.8 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF502) AA_permease PF00324.21 gi|292654510|ref|YP_003534407.1| - 0.0022 16.7 3.4 0.0027 16.4 3.4 1.1 1 0 0 1 1 1 1 Amino acid permease DUF4013 PF13197.6 gi|292654510|ref|YP_003534407.1| - 0.0076 16.1 7.6 0.011 15.6 7.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) TMEM234 PF10639.9 gi|292654510|ref|YP_003534407.1| - 0.15 12.1 2.3 0.38 10.8 1.3 1.9 2 0 0 2 2 2 0 Putative transmembrane family 234 ABC2_membrane_3 PF12698.7 gi|292654510|ref|YP_003534407.1| - 2 7.4 9.6 3.1 6.8 9.6 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Pro_dh PF01619.18 gi|292654511|ref|YP_003534408.1| - 5.6e-29 101.6 0.0 8.5e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 Proline dehydrogenase CarS-like PF01864.17 gi|292654512|ref|YP_003534409.1| - 4.4e-47 160.3 0.6 5.1e-47 160.1 0.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|292654512|ref|YP_003534409.1| - 0.00022 21.1 3.1 0.00022 21.1 3.1 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.27 gi|292654513|ref|YP_003534410.1| - 1.4e-12 47.4 4.1 2e-12 46.9 4.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|292654513|ref|YP_003534410.1| - 9e-05 22.0 0.1 0.00012 21.6 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|292654513|ref|YP_003534410.1| - 0.022 14.3 0.4 0.05 13.1 0.2 1.5 1 1 1 2 2 2 0 Phosphoribosyl transferase Pribosyltran PF00156.27 gi|292654514|ref|YP_003534411.1| - 1.1e-11 44.6 0.3 1.7e-11 43.9 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|292654514|ref|YP_003534411.1| - 0.0061 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|292654514|ref|YP_003534411.1| - 0.052 13.9 0.4 0.12 12.7 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Xan_ur_permease PF00860.20 gi|292654515|ref|YP_003534412.1| - 1.1e-36 126.4 44.1 1.1e-36 126.4 44.1 1.4 1 1 1 2 2 2 1 Permease family Arylsulfotrans PF05935.11 gi|292654516|ref|YP_003534413.1| - 6.7e-11 41.7 5.8 1.7e-09 37.1 3.4 2.3 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|292654516|ref|YP_003534413.1| - 9.7e-08 31.7 0.5 1.2e-05 24.9 0.3 2.8 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|292654516|ref|YP_003534413.1| - 0.042 13.9 4.2 4.3 7.5 0.0 3.8 5 0 0 5 5 5 0 NHL repeat GST_N_3 PF13417.6 gi|292654517|ref|YP_003534414.1| - 3.2e-13 49.9 0.0 3.5e-13 49.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|292654517|ref|YP_003534414.1| - 1.8e-12 47.3 0.0 2.8e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|292654517|ref|YP_003534414.1| - 4.7e-07 30.0 0.0 5.6e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|292654517|ref|YP_003534414.1| - 0.0047 17.3 0.2 0.0052 17.2 0.2 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|292654517|ref|YP_003534414.1| - 0.0075 16.7 0.0 0.0092 16.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|292654517|ref|YP_003534414.1| - 0.15 12.2 0.1 1.1 9.4 0.1 1.9 1 1 1 2 2 2 0 Thioredoxin HTH_3 PF01381.22 gi|292654518|ref|YP_003534415.1| - 1.7e-12 47.2 0.0 2.8e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|292654518|ref|YP_003534415.1| - 2.2e-07 31.1 0.2 6.1e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|292654518|ref|YP_003534415.1| - 6.2e-06 26.1 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|292654518|ref|YP_003534415.1| - 6.9e-05 22.6 0.1 0.00013 21.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|292654518|ref|YP_003534415.1| - 0.00014 21.6 0.3 0.00032 20.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|292654518|ref|YP_003534415.1| - 0.00029 20.7 0.0 0.00074 19.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|292654518|ref|YP_003534415.1| - 0.0054 16.2 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|292654518|ref|YP_003534415.1| - 0.03 14.2 0.0 0.09 12.7 0.0 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|292654518|ref|YP_003534415.1| - 0.051 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|292654518|ref|YP_003534415.1| - 0.09 12.6 0.1 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.12 gi|292654518|ref|YP_003534415.1| - 0.18 11.6 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF1743 PF08489.11 gi|292654519|ref|YP_003534416.1| - 5.7e-39 132.8 0.0 2.3e-38 130.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|292654519|ref|YP_003534416.1| - 0.0022 17.9 0.1 0.0047 16.9 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn-ribbon_8 PF09723.10 gi|292654519|ref|YP_003534416.1| - 0.0044 17.1 1.6 0.76 9.9 0.1 2.8 2 0 0 2 2 2 1 Zinc ribbon domain IBR PF01485.21 gi|292654519|ref|YP_003534416.1| - 0.012 15.8 0.1 0.02 15.1 0.1 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Zn_Tnp_IS1595 PF12760.7 gi|292654519|ref|YP_003534416.1| - 0.018 15.0 1.8 0.039 13.9 1.8 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|292654519|ref|YP_003534416.1| - 0.026 14.6 0.5 0.064 13.3 0.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon tRNA_anti_2 PF13742.6 gi|292654519|ref|YP_003534416.1| - 0.032 14.4 0.0 0.057 13.6 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|292654519|ref|YP_003534416.1| - 0.036 14.0 1.0 0.081 12.9 1.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|292654519|ref|YP_003534416.1| - 0.048 13.7 0.2 0.091 12.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|292654519|ref|YP_003534416.1| - 0.052 13.4 0.1 0.091 12.7 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.6 gi|292654519|ref|YP_003534416.1| - 0.056 14.0 2.0 0.13 12.8 2.0 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain RNA_POL_M_15KD PF02150.16 gi|292654519|ref|YP_003534416.1| - 0.43 10.5 1.4 0.83 9.6 1.4 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Big_1 PF02369.16 gi|292654520|ref|YP_003534417.1| - 4.8e-06 26.5 2.3 1.2e-05 25.2 2.3 1.6 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|292654520|ref|YP_003534417.1| - 3.2e-05 24.1 1.2 6.1e-05 23.2 1.2 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|292654520|ref|YP_003534417.1| - 0.0006 20.1 0.7 0.00098 19.4 0.7 1.4 1 0 0 1 1 1 1 Invasin, domain 3 YtkA PF13115.6 gi|292654520|ref|YP_003534417.1| - 0.012 16.2 0.5 0.02 15.5 0.4 1.5 1 1 0 1 1 1 0 YtkA-like DUF853 PF05872.12 gi|292654521|ref|YP_003534418.1| - 1.2e-07 30.8 0.1 0.0055 15.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|292654521|ref|YP_003534418.1| - 1.1e-05 25.6 0.0 2.2e-05 24.7 0.0 1.5 2 0 0 2 2 2 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|292654521|ref|YP_003534418.1| - 0.00053 19.0 0.0 0.56 9.0 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|292654521|ref|YP_003534418.1| - 0.011 16.0 0.0 4.5 7.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|292654521|ref|YP_003534418.1| - 0.019 14.3 0.2 0.053 12.8 0.2 1.7 2 0 0 2 2 2 0 Zeta toxin FtsK_SpoIIIE PF01580.18 gi|292654521|ref|YP_003534418.1| - 0.02 14.2 0.1 0.45 9.8 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Helicase_RecD PF05127.14 gi|292654521|ref|YP_003534418.1| - 0.14 12.0 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Helicase AAA_16 PF13191.6 gi|292654521|ref|YP_003534418.1| - 0.17 12.2 1.9 0.57 10.5 0.6 2.3 1 1 1 2 2 2 0 AAA ATPase domain CRCB PF02537.15 gi|292654522|ref|YP_003534419.1| - 8.3e-17 61.3 14.5 1e-16 61.0 14.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) SpecificRecomb PF10136.9 gi|292654522|ref|YP_003534419.1| - 0.0023 16.3 1.6 0.0023 16.3 1.6 1.6 1 1 1 2 2 2 1 Site-specific recombinase CRCB PF02537.15 gi|292654523|ref|YP_003534420.1| - 1.5e-19 70.1 13.1 1.9e-19 69.7 13.1 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) RNA_pol_Rpb5_C PF01191.19 gi|292654524|ref|YP_003534421.1| - 8.3e-26 89.7 0.8 9.3e-26 89.5 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|292654524|ref|YP_003534421.1| - 0.046 14.0 0.4 0.35 11.1 0.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) RHH_3 PF12651.7 gi|292654524|ref|YP_003534421.1| - 0.09 12.8 0.1 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain RNA_pol_Rpb2_1 PF04563.15 gi|292654525|ref|YP_003534422.1| - 9.4e-50 168.9 0.2 1.2e-49 168.7 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|292654525|ref|YP_003534422.1| - 8.6e-28 97.3 0.1 1.3e-27 96.7 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|292654525|ref|YP_003534422.1| - 9.9e-25 86.5 0.0 2e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|292654526|ref|YP_003534423.1| - 1.1e-128 429.7 0.0 1.8e-128 428.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|292654526|ref|YP_003534423.1| - 6.4e-25 87.4 0.0 1.1e-24 86.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|292654526|ref|YP_003534423.1| - 1.4e-22 79.7 1.0 7.2e-22 77.4 0.5 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|292654526|ref|YP_003534423.1| - 4.5e-09 36.7 5.3 4.5e-09 36.7 5.3 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|292654527|ref|YP_003534424.1| - 1.5e-107 359.6 0.0 2.2e-107 359.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|292654527|ref|YP_003534424.1| - 5.4e-69 231.7 0.4 8.5e-69 231.0 0.4 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|292654527|ref|YP_003534424.1| - 3.8e-31 107.2 0.0 8.4e-31 106.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|292654527|ref|YP_003534424.1| - 7.1e-29 100.8 0.0 1.2e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|292654527|ref|YP_003534424.1| - 2.5e-26 92.7 0.0 4.9e-26 91.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HypA PF01155.19 gi|292654527|ref|YP_003534424.1| - 0.22 11.6 1.1 0.79 9.8 0.1 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|292654527|ref|YP_003534424.1| - 1.4 9.6 8.5 1.7 9.4 1.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_pol_Rpb1_5 PF04998.17 gi|292654528|ref|YP_003534425.1| - 4.5e-55 186.9 0.4 5.6e-55 186.6 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|292654528|ref|YP_003534425.1| - 0.15 12.1 0.1 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain KH_2 PF07650.17 gi|292654529|ref|YP_003534426.1| - 2.2e-13 49.8 0.0 8.5e-07 28.7 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|292654529|ref|YP_003534426.1| - 2.9e-11 43.3 0.0 8.8e-11 41.7 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|292654529|ref|YP_003534426.1| - 1.1e-05 25.2 0.0 0.0074 16.1 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|292654529|ref|YP_003534426.1| - 0.026 14.3 0.0 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 KH domain MS_channel PF00924.18 gi|292654530|ref|YP_003534427.1| - 6.2e-28 97.8 0.2 9.6e-28 97.1 0.0 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF308 PF03729.13 gi|292654530|ref|YP_003534427.1| - 0.033 14.5 1.1 0.096 13.0 1.3 1.7 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) SNARE_assoc PF09335.11 gi|292654530|ref|YP_003534427.1| - 0.057 13.9 0.1 1.4 9.4 0.1 2.2 2 0 0 2 2 2 0 SNARE associated Golgi protein Ribosom_S12_S23 PF00164.25 gi|292654531|ref|YP_003534428.1| - 4.3e-50 168.1 0.5 5.3e-50 167.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|292654532|ref|YP_003534429.1| - 1.5e-36 125.3 3.0 1.9e-36 125.0 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Tsi6 PF18660.1 gi|292654532|ref|YP_003534429.1| - 0.023 14.8 0.0 29 4.8 0.0 3.4 2 1 1 3 3 3 0 Tsi6 DUF4157 PF13699.6 gi|292654533|ref|YP_003534430.1| - 0.06 13.6 2.0 0.18 12.1 1.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4157) GTP_EFTU PF00009.27 gi|292654534|ref|YP_003534431.1| - 2.7e-65 219.5 0.2 4.3e-65 218.9 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|292654534|ref|YP_003534431.1| - 2.5e-24 85.1 0.0 9.9e-24 83.2 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|292654534|ref|YP_003534431.1| - 9.7e-23 80.2 0.0 3.2e-22 78.6 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|292654534|ref|YP_003534431.1| - 1.3e-21 76.5 1.9 1.3e-21 76.5 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|292654534|ref|YP_003534431.1| - 6.9e-15 55.2 3.0 2e-14 53.7 1.1 2.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|292654534|ref|YP_003534431.1| - 2.7e-05 24.2 0.3 0.00021 21.3 0.1 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|292654534|ref|YP_003534431.1| - 0.14 12.0 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain ACT PF01842.25 gi|292654535|ref|YP_003534432.1| - 4.6e-07 29.5 0.9 0.0047 16.7 0.0 2.6 1 1 1 2 2 2 2 ACT domain Homoserine_dh PF00742.19 gi|292654536|ref|YP_003534433.1| - 9.8e-47 159.1 0.2 1.4e-46 158.6 0.2 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|292654536|ref|YP_003534433.1| - 1.4e-07 32.2 0.5 3e-07 31.1 0.1 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|292654536|ref|YP_003534433.1| - 8.6e-07 28.9 0.0 1.9e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GTP_EFTU PF00009.27 gi|292654537|ref|YP_003534434.1| - 1.3e-55 188.0 0.0 1.6e-55 187.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|292654537|ref|YP_003534434.1| - 6.1e-38 129.6 0.1 1.4e-37 128.4 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|292654537|ref|YP_003534434.1| - 2.8e-17 62.8 3.1 2.8e-16 59.7 1.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|292654537|ref|YP_003534434.1| - 1.4e-06 28.3 0.2 2e-05 24.6 0.2 2.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|292654537|ref|YP_003534434.1| - 0.00083 19.3 0.1 0.038 13.9 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|292654537|ref|YP_003534434.1| - 0.002 17.5 0.1 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.10 gi|292654537|ref|YP_003534434.1| - 0.0063 16.0 0.0 0.36 10.3 0.0 2.4 1 1 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.6 gi|292654537|ref|YP_003534434.1| - 0.008 16.1 0.5 0.022 14.7 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Septin PF00735.18 gi|292654537|ref|YP_003534434.1| - 0.024 13.9 0.0 0.065 12.5 0.0 1.7 1 1 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|292654537|ref|YP_003534434.1| - 0.1 12.4 0.2 1.5 8.6 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|292654537|ref|YP_003534434.1| - 0.14 11.7 0.2 3 7.4 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|292654537|ref|YP_003534434.1| - 0.14 12.2 0.0 12 5.9 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.22 gi|292654538|ref|YP_003534435.1| - 2.4e-25 88.6 0.0 2.6e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e RelB PF04221.12 gi|292654540|ref|YP_003534437.1| - 0.1 12.6 0.1 0.37 10.8 0.1 1.9 1 1 1 2 2 2 0 RelB antitoxin Arylesterase PF01731.20 gi|292654540|ref|YP_003534437.1| - 0.2 11.9 0.0 1.5 9.1 0.0 2.0 1 1 1 2 2 2 0 Arylesterase Adeno_E3_CR2 PF02439.15 gi|292654543|ref|YP_003534440.1| - 1.7 8.5 6.6 0.4 10.5 1.9 2.0 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 TAT_signal PF10518.9 gi|292654544|ref|YP_003534441.1| - 0.019 14.8 1.5 0.038 13.9 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292654544|ref|YP_003534441.1| - 0.11 11.9 2.3 0.21 11.0 2.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PhyH PF05721.13 gi|292654548|ref|YP_003534445.1| - 0.0049 17.2 0.0 0.008 16.4 0.0 1.3 1 1 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) Peptidase_S24 PF00717.23 gi|292654548|ref|YP_003534445.1| - 0.086 12.8 0.1 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Peptidase S24-like PcrB PF01884.17 gi|292654549|ref|YP_003534446.1| - 0.033 13.6 0.0 0.043 13.3 0.0 1.1 1 0 0 1 1 1 0 PcrB family DUF4536 PF15055.6 gi|292654550|ref|YP_003534447.1| - 0.012 15.9 1.4 0.016 15.5 0.8 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4536) DUF5516 PF17637.2 gi|292654550|ref|YP_003534447.1| - 0.055 13.2 0.6 0.082 12.7 0.3 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5516) TF_Zn_Ribbon PF08271.12 gi|292654552|ref|YP_003534449.1| - 0.01 15.3 0.9 0.78 9.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|292654552|ref|YP_003534449.1| - 0.21 11.7 3.5 0.51 10.5 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|292654552|ref|YP_003534449.1| - 0.23 11.2 3.2 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain AAA_22 PF13401.6 gi|292654554|ref|YP_003534451.1| - 3.6e-07 30.5 0.0 5.1e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zot PF05707.12 gi|292654554|ref|YP_003534451.1| - 0.002 17.8 0.0 0.0029 17.3 0.0 1.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_16 PF13191.6 gi|292654554|ref|YP_003534451.1| - 0.0047 17.3 0.3 0.013 15.9 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|292654554|ref|YP_003534451.1| - 0.0068 15.7 0.0 0.013 14.8 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF853 PF05872.12 gi|292654554|ref|YP_003534451.1| - 0.019 13.6 0.4 1.7 7.2 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_29 PF13555.6 gi|292654554|ref|YP_003534451.1| - 0.02 14.6 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|292654554|ref|YP_003534451.1| - 0.024 15.2 0.0 0.065 13.8 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|292654554|ref|YP_003534451.1| - 0.033 14.4 0.5 0.088 13.1 0.5 1.8 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|292654554|ref|YP_003534451.1| - 0.034 13.1 0.1 2.1 7.2 0.3 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|292654554|ref|YP_003534451.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|292654554|ref|YP_003534451.1| - 0.044 13.5 0.5 0.088 12.5 0.5 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|292654554|ref|YP_003534451.1| - 0.051 13.6 0.0 0.51 10.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|292654554|ref|YP_003534451.1| - 0.059 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.18 gi|292654554|ref|YP_003534451.1| - 0.087 12.6 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|292654554|ref|YP_003534451.1| - 0.11 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|292654554|ref|YP_003534451.1| - 0.13 12.2 0.0 0.23 11.3 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|292654554|ref|YP_003534451.1| - 0.25 11.8 0.0 0.44 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Phage_integrase PF00589.22 gi|292654556|ref|YP_003534453.1| - 7.4e-17 61.7 0.0 8.8e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|292654556|ref|YP_003534453.1| - 0.0075 16.4 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Integrase RHH_1 PF01402.21 gi|292654557|ref|YP_003534454.1| - 0.031 14.2 0.5 0.12 12.4 0.3 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_1 PF01402.21 gi|292654558|ref|YP_003534455.1| - 4e-07 29.7 0.0 5.3e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|292654558|ref|YP_003534455.1| - 0.00018 21.6 0.0 0.00021 21.4 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Arc PF03869.14 gi|292654558|ref|YP_003534455.1| - 0.00055 19.7 0.0 0.00071 19.4 0.0 1.2 1 0 0 1 1 1 1 Arc-like DNA binding domain RHH_5 PF07878.11 gi|292654558|ref|YP_003534455.1| - 0.0012 18.6 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CopG_antitoxin PF12441.8 gi|292654558|ref|YP_003534455.1| - 0.0076 16.8 0.0 0.01 16.4 0.0 1.2 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system Nrap PF03813.14 gi|292654558|ref|YP_003534455.1| - 0.016 15.3 0.0 0.017 15.2 0.0 1.0 1 0 0 1 1 1 0 Nrap protein domain 1 PEPCK_N PF17297.2 gi|292654558|ref|YP_003534455.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase N-terminal domain COMM_domain PF07258.14 gi|292654559|ref|YP_003534456.1| - 0.076 13.1 0.0 0.09 12.9 0.0 1.1 1 0 0 1 1 1 0 COMM domain Sigma70_r4_2 PF08281.12 gi|292654560|ref|YP_003534457.1| - 1.1e-07 31.3 0.0 1.3e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|292654560|ref|YP_003534457.1| - 0.00063 19.6 0.0 0.00079 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|292654560|ref|YP_003534457.1| - 0.0014 18.6 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|292654560|ref|YP_003534457.1| - 0.015 15.1 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|292654560|ref|YP_003534457.1| - 0.015 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292654560|ref|YP_003534457.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.4 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|292654560|ref|YP_003534457.1| - 0.047 13.8 0.1 0.07 13.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PHBC_N PF12551.8 gi|292654560|ref|YP_003534457.1| - 0.14 12.0 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Poly-beta-hydroxybutyrate polymerase N terminal HTH_Tnp_4 PF13613.6 gi|292654561|ref|YP_003534458.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Phage_integrase PF00589.22 gi|292654562|ref|YP_003534459.1| - 6.8e-09 35.8 0.0 2.5e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|292654562|ref|YP_003534459.1| - 2.1e-06 27.9 0.1 7.9e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|292654562|ref|YP_003534459.1| - 0.018 15.5 0.0 0.23 11.9 0.0 2.2 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain TAP42 PF04177.12 gi|292654562|ref|YP_003534459.1| - 0.2 10.8 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 TAP42-like family SseB_C PF14581.6 gi|292654563|ref|YP_003534460.1| - 0.05 13.7 0.0 0.063 13.4 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain Pentaxin PF00354.17 gi|292654564|ref|YP_003534461.1| - 0.054 13.2 0.0 0.056 13.1 0.0 1.1 1 0 0 1 1 1 0 Pentaxin family Prok-RING_1 PF14446.6 gi|292654564|ref|YP_003534461.1| - 0.15 12.1 1.4 0.28 11.1 1.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RNB PF00773.19 gi|292654565|ref|YP_003534462.1| - 1e-81 274.8 0.2 1.9e-80 270.6 0.2 2.1 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.12 gi|292654565|ref|YP_003534462.1| - 0.0032 17.5 0.0 0.0087 16.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF982) Terminase_4 PF05119.12 gi|292654565|ref|YP_003534462.1| - 0.07 13.6 0.0 14 6.2 0.0 2.8 3 0 0 3 3 3 0 Phage terminase, small subunit GATA PF00320.27 gi|292654566|ref|YP_003534463.1| - 0.57 9.8 4.8 2.5 7.8 0.6 2.3 2 0 0 2 2 2 0 GATA zinc finger ADD_ATRX PF17981.1 gi|292654566|ref|YP_003534463.1| - 0.78 9.7 3.8 4.4 7.3 0.1 2.2 2 0 0 2 2 2 0 Cysteine Rich ADD domain PUA PF01472.20 gi|292654567|ref|YP_003534464.1| - 4.6e-17 61.8 3.3 8.8e-17 60.8 3.3 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|292654567|ref|YP_003534464.1| - 0.0033 17.7 0.1 0.0056 16.9 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1028 PF06267.12 gi|292654568|ref|YP_003534465.1| - 2.3e-66 223.2 0.8 2.7e-66 223.0 0.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) SepF PF04472.12 gi|292654569|ref|YP_003534466.1| - 1.5e-14 54.0 1.1 2e-14 53.6 1.1 1.2 1 0 0 1 1 1 1 Cell division protein SepF Lar_N PF09861.9 gi|292654569|ref|YP_003534466.1| - 0.035 13.3 0.1 0.044 13.0 0.1 1.1 1 0 0 1 1 1 0 Lactate racemase N-terminal domain UvrA_inter PF17760.1 gi|292654570|ref|YP_003534467.1| - 2.7e-34 117.5 0.0 1.4e-33 115.2 0.0 2.3 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|292654570|ref|YP_003534467.1| - 1.6e-32 112.1 0.1 7.7e-29 100.3 0.0 4.1 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|292654570|ref|YP_003534467.1| - 8.7e-19 68.4 0.0 1.2e-09 38.8 0.0 4.0 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|292654570|ref|YP_003534467.1| - 2.3e-12 46.8 0.0 0.0033 16.9 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292654570|ref|YP_003534467.1| - 1e-08 34.7 0.0 0.0018 18.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|292654570|ref|YP_003534467.1| - 3e-07 31.0 0.1 0.036 14.4 0.0 3.5 3 0 0 3 3 3 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.19 gi|292654570|ref|YP_003534467.1| - 5.9e-07 29.8 3.6 0.0033 17.7 0.6 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_22 PF13401.6 gi|292654570|ref|YP_003534467.1| - 4.4e-06 27.0 0.1 0.11 12.8 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_15 PF13175.6 gi|292654570|ref|YP_003534467.1| - 0.00011 22.0 0.0 0.018 14.8 0.0 3.3 4 0 0 4 4 4 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|292654570|ref|YP_003534467.1| - 0.00019 21.4 0.0 0.73 9.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|292654570|ref|YP_003534467.1| - 0.00022 20.9 0.1 0.3 10.6 0.0 3.2 3 0 0 3 3 2 1 AAA domain ATPase PF06745.13 gi|292654570|ref|YP_003534467.1| - 0.00031 20.2 0.0 0.091 12.1 0.0 2.5 2 0 0 2 2 2 1 KaiC AAA_21 PF13304.6 gi|292654570|ref|YP_003534467.1| - 0.00049 20.0 5.7 0.34 10.7 0.0 4.2 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|292654570|ref|YP_003534467.1| - 0.001 19.7 0.7 0.57 10.7 0.0 3.3 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|292654570|ref|YP_003534467.1| - 0.0018 18.5 0.0 1.2 9.3 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_23 PF13476.6 gi|292654570|ref|YP_003534467.1| - 0.0032 18.0 0.2 0.94 9.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain BCA_ABC_TP_C PF12399.8 gi|292654570|ref|YP_003534467.1| - 0.0032 17.4 0.7 0.016 15.2 0.3 2.4 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter APS_kinase PF01583.20 gi|292654570|ref|YP_003534467.1| - 0.0035 17.3 0.2 6.1 6.7 0.0 3.4 3 0 0 3 3 3 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 gi|292654570|ref|YP_003534467.1| - 0.0055 16.5 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase RNA12 PF10443.9 gi|292654570|ref|YP_003534467.1| - 0.0063 15.3 0.0 0.42 9.3 0.0 2.1 2 0 0 2 2 2 1 RNA12 protein AAA_14 PF13173.6 gi|292654570|ref|YP_003534467.1| - 0.0067 16.5 0.0 2.3 8.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|292654570|ref|YP_003534467.1| - 0.0069 16.0 0.3 0.61 9.6 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|292654570|ref|YP_003534467.1| - 0.0095 16.3 0.0 0.26 11.7 0.0 2.4 2 0 0 2 2 2 1 RNA helicase DUF2075 PF09848.9 gi|292654570|ref|YP_003534467.1| - 0.01 15.1 0.0 3 7.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|292654570|ref|YP_003534467.1| - 0.011 15.6 0.0 0.4 10.6 0.0 2.3 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 gi|292654570|ref|YP_003534467.1| - 0.017 15.1 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF3987 PF13148.6 gi|292654570|ref|YP_003534467.1| - 0.023 13.7 0.0 6 5.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3987) AAA_30 PF13604.6 gi|292654570|ref|YP_003534467.1| - 0.068 12.9 0.1 3.4 7.4 0.1 2.7 2 0 0 2 2 2 0 AAA domain Anti-TRAP PF15777.5 gi|292654570|ref|YP_003534467.1| - 0.082 12.9 6.1 12 5.9 1.0 3.6 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein NB-ARC PF00931.22 gi|292654570|ref|YP_003534467.1| - 0.083 12.1 0.0 0.88 8.7 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|292654570|ref|YP_003534467.1| - 0.12 12.1 0.1 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zn-ribbon_8 PF09723.10 gi|292654570|ref|YP_003534467.1| - 0.17 12.0 5.7 25 5.1 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain MMR_HSR1 PF01926.23 gi|292654570|ref|YP_003534467.1| - 0.23 11.5 1.1 6.6 6.9 0.0 3.3 4 0 0 4 4 4 0 50S ribosome-binding GTPase zinc_ribbon_9 PF14369.6 gi|292654570|ref|YP_003534467.1| - 0.62 10.4 3.6 2.7 8.3 0.1 2.9 3 0 0 3 3 2 0 zinc-ribbon Sortilin-Vps10 PF15902.5 gi|292654572|ref|YP_003534469.1| - 4.2e-14 52.2 0.0 3e-05 23.0 0.0 3.5 2 1 1 3 3 3 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|292654572|ref|YP_003534469.1| - 2.6e-11 41.8 21.3 0.13 12.4 0.2 6.8 6 0 0 6 6 6 5 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|292654572|ref|YP_003534469.1| - 1.6e-07 30.9 3.0 0.039 13.2 0.0 3.4 2 1 1 3 3 3 3 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.6 gi|292654572|ref|YP_003534469.1| - 0.0073 15.6 4.0 0.25 10.6 0.1 3.4 2 1 1 3 3 3 2 BNR repeat-like domain DUF4185 PF13810.6 gi|292654572|ref|YP_003534469.1| - 0.23 10.7 4.7 20 4.3 0.0 3.8 2 2 2 4 4 4 0 Domain of unknown function (DUF4185) FAD_binding_3 PF01494.19 gi|292654573|ref|YP_003534470.1| - 8.3e-14 51.6 3.5 1e-10 41.4 1.4 3.0 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|292654573|ref|YP_003534470.1| - 2.3e-06 26.9 1.3 0.0077 15.3 0.0 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|292654573|ref|YP_003534470.1| - 6.7e-06 25.9 0.8 0.0086 15.7 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292654573|ref|YP_003534470.1| - 1.1e-05 24.8 1.2 0.00023 20.5 0.9 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|292654573|ref|YP_003534470.1| - 3.8e-05 23.2 0.2 5.3e-05 22.7 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|292654573|ref|YP_003534470.1| - 0.0059 15.7 2.4 0.0086 15.2 0.6 1.9 1 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|292654573|ref|YP_003534470.1| - 0.0067 16.6 0.2 0.028 14.6 0.2 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|292654573|ref|YP_003534470.1| - 0.0068 15.2 0.1 0.023 13.4 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|292654573|ref|YP_003534470.1| - 0.021 14.1 0.4 0.038 13.3 0.1 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|292654573|ref|YP_003534470.1| - 0.056 12.5 0.0 0.82 8.7 0.0 2.1 2 0 0 2 2 2 0 Squalene epoxidase Trp_halogenase PF04820.14 gi|292654573|ref|YP_003534470.1| - 0.25 10.1 0.1 0.85 8.4 0.0 1.8 3 0 0 3 3 3 0 Tryptophan halogenase GCV_T PF01571.21 gi|292654574|ref|YP_003534471.1| - 1.4e-37 129.5 0.0 1.9e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|292654574|ref|YP_003534471.1| - 2.7e-13 49.7 0.0 7.5e-13 48.2 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain PGM_PMM_I PF02878.16 gi|292654574|ref|YP_003534471.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GntR PF00392.21 gi|292654575|ref|YP_003534472.1| - 0.0098 15.5 0.1 0.017 14.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|292654575|ref|YP_003534472.1| - 0.011 15.8 0.3 0.018 15.1 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GGDEF_2 PF17853.1 gi|292654575|ref|YP_003534472.1| - 0.022 15.0 0.4 0.026 14.8 0.4 1.2 1 0 0 1 1 1 0 GGDEF-like domain TrmB PF01978.19 gi|292654575|ref|YP_003534472.1| - 0.15 11.9 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB zf-ribbon_3 PF13248.6 gi|292654576|ref|YP_003534473.1| - 0.0011 18.3 5.7 0.28 10.7 0.2 3.6 3 0 0 3 3 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292654576|ref|YP_003534473.1| - 0.0059 16.7 4.4 0.072 13.2 1.6 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DUF1610 PF07754.11 gi|292654576|ref|YP_003534473.1| - 0.0093 15.9 0.9 0.0093 15.9 0.9 3.7 4 0 0 4 4 3 1 Domain of unknown function (DUF1610) DZR PF12773.7 gi|292654576|ref|YP_003534473.1| - 0.0094 16.0 1.6 0.22 11.6 0.5 2.4 2 0 0 2 2 2 1 Double zinc ribbon zinc_ribbon_10 PF10058.9 gi|292654576|ref|YP_003534473.1| - 0.055 13.2 1.7 1 9.1 0.1 3.1 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS91 PF14319.6 gi|292654576|ref|YP_003534473.1| - 0.15 12.1 2.9 0.64 10.1 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_4 PF13717.6 gi|292654576|ref|YP_003534473.1| - 0.16 11.9 2.7 30 4.7 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292654576|ref|YP_003534473.1| - 0.24 11.0 7.1 2.3 7.8 3.4 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|292654576|ref|YP_003534473.1| - 0.29 11.1 4.2 0.15 12.1 1.4 2.0 2 0 0 2 2 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_9 PF14369.6 gi|292654576|ref|YP_003534473.1| - 0.31 11.3 6.3 5.1 7.5 1.9 3.3 2 1 1 3 3 3 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|292654576|ref|YP_003534473.1| - 0.58 10.1 3.0 10 6.1 0.7 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|292654576|ref|YP_003534473.1| - 0.6 9.5 4.7 2.6 7.5 1.7 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|292654576|ref|YP_003534473.1| - 0.61 9.9 11.1 0.37 10.6 0.5 3.2 3 0 0 3 3 3 0 zinc-ribbon domain ADD_DNMT3 PF17980.1 gi|292654576|ref|YP_003534473.1| - 0.73 9.9 2.3 1.3 9.1 0.1 2.0 2 0 0 2 2 2 0 Cysteine rich ADD domain in DNMT3 zf-NADH-PPase PF09297.11 gi|292654576|ref|YP_003534473.1| - 1 9.1 8.3 1.5 8.6 0.0 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|292654576|ref|YP_003534473.1| - 1.9 8.3 7.5 4 7.3 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|292654576|ref|YP_003534473.1| - 3.3 7.4 6.6 19 4.9 0.2 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|292654576|ref|YP_003534473.1| - 3.3 7.8 7.6 39 4.3 0.0 3.1 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF5611 PF18446.1 gi|292654577|ref|YP_003534474.1| - 2.5e-31 108.6 0.1 2.8e-31 108.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) Entericidin PF08085.11 gi|292654577|ref|YP_003534474.1| - 0.12 12.4 0.1 0.36 10.9 0.1 1.8 1 0 0 1 1 1 0 Entericidin EcnA/B family Usp PF00582.26 gi|292654578|ref|YP_003534475.1| - 1.8e-19 70.6 1.7 2e-19 70.5 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family FAD_binding_9 PF08021.11 gi|292654578|ref|YP_003534475.1| - 0.14 12.4 0.8 0.29 11.3 0.7 1.6 1 1 0 1 1 1 0 Siderophore-interacting FAD-binding domain AIM24 PF01987.17 gi|292654579|ref|YP_003534476.1| - 1.4e-62 211.1 0.1 1.7e-62 210.8 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF1826 PF08856.11 gi|292654579|ref|YP_003534476.1| - 0.044 13.7 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1826) ROK PF00480.20 gi|292654580|ref|YP_003534477.1| - 6e-44 150.7 0.1 7.1e-44 150.4 0.1 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|292654580|ref|YP_003534477.1| - 5.5e-07 29.4 0.1 9.1e-07 28.6 0.1 1.6 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|292654580|ref|YP_003534477.1| - 0.001 18.7 0.0 0.0036 16.9 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain NifU PF01106.17 gi|292654582|ref|YP_003534479.1| - 2.8e-09 37.0 0.4 7.6e-09 35.6 0.4 1.7 1 0 0 1 1 1 1 NifU-like domain LVIVD PF08309.11 gi|292654582|ref|YP_003534479.1| - 4.1e-09 35.6 7.7 0.0015 17.8 0.0 5.7 6 0 0 6 6 6 3 LVIVD repeat Beta_propel PF09826.9 gi|292654582|ref|YP_003534479.1| - 0.0016 17.4 0.0 2.7 6.7 0.0 3.3 4 0 0 4 4 4 2 Beta propeller domain TAT_signal PF10518.9 gi|292654582|ref|YP_003534479.1| - 0.019 14.8 1.6 0.019 14.8 1.6 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence SBP56 PF05694.11 gi|292654582|ref|YP_003534479.1| - 0.4 9.5 1.4 2.9 6.6 0.1 2.4 3 0 0 3 3 3 0 56kDa selenium binding protein (SBP56) DUF402 PF04167.13 gi|292654583|ref|YP_003534480.1| - 1.1e-16 60.8 2.1 2.5e-16 59.6 2.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|292654583|ref|YP_003534480.1| - 0.0062 16.9 1.3 0.031 14.6 1.3 2.2 1 1 0 1 1 1 1 S1 RNA binding domain KdgM PF06178.13 gi|292654584|ref|YP_003534481.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.0 1 0 0 1 1 1 0 Oligogalacturonate-specific porin protein (KdgM) PrsW-protease PF13367.6 gi|292654585|ref|YP_003534482.1| - 5.3e-46 156.5 16.2 1e-45 155.6 16.2 1.4 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease Rab5ip PF07019.12 gi|292654585|ref|YP_003534482.1| - 0.0027 18.3 0.8 0.0027 18.3 0.8 2.9 2 1 0 2 2 2 1 Rab5-interacting protein (Rab5ip) DUF2208 PF09973.9 gi|292654585|ref|YP_003534482.1| - 0.17 11.5 2.5 0.66 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2208) Lum_binding PF00677.17 gi|292654586|ref|YP_003534483.1| - 2e-44 149.5 0.1 3e-21 75.2 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain CitMHS PF03600.16 gi|292654588|ref|YP_003534485.1| - 5.1e-12 45.6 26.1 5.1e-12 45.6 26.1 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|292654588|ref|YP_003534485.1| - 5.7e-11 42.1 13.6 5.7e-11 42.1 13.6 1.9 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|292654589|ref|YP_003534486.1| - 7.5e-31 107.4 3.7 7.6e-31 107.4 3.7 1.1 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|292654589|ref|YP_003534486.1| - 2.2e-16 59.4 3.1 8.4e-09 35.1 0.3 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|292654589|ref|YP_003534486.1| - 1.7e-05 24.1 12.4 0.00012 21.3 4.1 2.0 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region Peptidase_M24 PF00557.24 gi|292654591|ref|YP_003534488.1| - 9.6e-11 41.8 0.6 1.5e-10 41.1 0.6 1.3 1 1 0 1 1 1 1 Metallopeptidase family M24 UvrD-helicase PF00580.21 gi|292654592|ref|YP_003534489.1| - 2.9e-25 89.4 0.0 1.7e-11 44.2 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|292654592|ref|YP_003534489.1| - 3.2e-22 79.4 0.0 1.1e-21 77.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|292654592|ref|YP_003534489.1| - 2.8e-15 56.6 0.0 3e-10 40.0 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|292654592|ref|YP_003534489.1| - 2.2e-09 37.0 0.1 0.0033 17.2 0.0 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|292654592|ref|YP_003534489.1| - 6.8e-08 32.5 0.1 0.00019 21.2 0.0 2.8 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|292654592|ref|YP_003534489.1| - 0.00018 21.4 0.0 2.8 7.6 0.0 3.9 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 gi|292654592|ref|YP_003534489.1| - 0.011 15.5 0.0 1.6 8.4 0.0 2.5 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|292654592|ref|YP_003534489.1| - 0.019 15.3 0.0 2.6 8.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|292654592|ref|YP_003534489.1| - 0.024 14.4 0.0 0.083 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Herpes_ori_bp PF02399.15 gi|292654592|ref|YP_003534489.1| - 0.026 12.6 0.0 0.04 12.0 0.0 1.2 1 0 0 1 1 1 0 Origin of replication binding protein AAA_25 PF13481.6 gi|292654592|ref|YP_003534489.1| - 0.041 13.5 1.4 1.3 8.6 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_12 PF13087.6 gi|292654592|ref|YP_003534489.1| - 0.046 13.3 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|292654592|ref|YP_003534489.1| - 0.09 12.4 0.0 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|292654592|ref|YP_003534489.1| - 0.11 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.6 gi|292654592|ref|YP_003534489.1| - 0.32 11.4 1.2 2.1 8.7 0.2 2.7 2 1 0 2 2 2 0 AAA ATPase domain zinc_ribbon_2 PF13240.6 gi|292654593|ref|YP_003534490.1| - 0.0003 20.4 1.3 0.00043 19.9 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|292654593|ref|YP_003534490.1| - 0.00091 19.2 0.3 0.00091 19.2 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|292654593|ref|YP_003534490.1| - 0.0039 16.5 3.8 0.0094 15.3 3.4 1.8 1 1 1 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|292654593|ref|YP_003534490.1| - 0.012 15.3 0.8 0.45 10.3 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.20 gi|292654593|ref|YP_003534490.1| - 0.033 14.2 1.2 3.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Cytochrom_c3_2 PF14537.6 gi|292654593|ref|YP_003534490.1| - 0.034 14.6 0.1 0.038 14.4 0.1 1.1 1 0 0 1 1 1 0 Cytochrome c3 zf-NADH-PPase PF09297.11 gi|292654593|ref|YP_003534490.1| - 0.074 12.7 0.8 0.074 12.7 0.8 2.7 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.6 gi|292654593|ref|YP_003534490.1| - 0.092 12.8 0.9 0.17 12.0 0.9 1.5 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|292654593|ref|YP_003534490.1| - 0.18 11.8 2.2 2.9 7.9 0.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|292654593|ref|YP_003534490.1| - 0.18 11.3 3.6 0.82 9.2 3.6 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|292654593|ref|YP_003534490.1| - 0.24 11.5 2.3 0.53 10.4 0.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|292654593|ref|YP_003534490.1| - 0.51 10.2 3.2 10 6.1 0.3 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.7 gi|292654593|ref|YP_003534490.1| - 0.65 10.5 4.6 2.4 8.6 4.5 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Peptidase_M32 PF02074.15 gi|292654594|ref|YP_003534491.1| - 4.2e-182 606.3 0.0 4.9e-182 606.1 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase L51_S25_CI-B8 PF05047.16 gi|292654594|ref|YP_003534491.1| - 0.19 11.7 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain HNH_2 PF13391.6 gi|292654595|ref|YP_003534492.1| - 4.8e-08 33.0 0.1 1.3e-07 31.7 0.1 1.8 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|292654595|ref|YP_003534492.1| - 3.2e-06 27.2 0.6 8.7e-06 25.8 0.6 1.7 1 0 0 1 1 1 1 HNH endonuclease Peptidase_M20 PF01546.28 gi|292654596|ref|YP_003534493.1| - 5.1e-31 108.0 2.1 6.5e-31 107.6 2.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292654596|ref|YP_003534493.1| - 2.1e-12 46.9 0.1 6.1e-12 45.4 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain MCPsignal PF00015.21 gi|292654597|ref|YP_003534494.1| - 2.6e-39 134.8 49.2 1.9e-38 132.0 22.7 4.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|292654597|ref|YP_003534494.1| - 2.9e-10 40.4 20.0 2e-09 37.7 0.0 6.9 8 1 0 8 8 5 1 HAMP domain DUF948 PF06103.11 gi|292654597|ref|YP_003534494.1| - 9.5e-07 29.0 31.3 0.0042 17.3 3.3 6.7 2 1 4 6 6 6 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|292654597|ref|YP_003534494.1| - 0.0001 22.5 18.1 1.3 9.4 0.5 5.2 4 2 2 6 6 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|292654597|ref|YP_003534494.1| - 0.00059 19.9 21.2 0.21 11.7 1.9 5.3 3 2 4 7 7 7 4 Protein of unknown function (DUF1664) Nup88 PF10168.9 gi|292654597|ref|YP_003534494.1| - 0.0012 16.8 7.1 0.073 10.9 1.0 2.3 1 1 2 3 3 3 3 Nuclear pore component Snapin_Pallidin PF14712.6 gi|292654597|ref|YP_003534494.1| - 0.0032 17.8 1.5 18 5.9 0.1 4.0 4 0 0 4 4 3 0 Snapin/Pallidin CREPT PF16566.5 gi|292654597|ref|YP_003534494.1| - 0.02 15.1 4.8 3 8.0 0.2 3.9 2 1 3 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour DASH_Dad1 PF08649.10 gi|292654597|ref|YP_003534494.1| - 0.042 14.0 1.6 1.4 9.2 0.2 3.8 3 0 0 3 3 3 0 DASH complex subunit Dad1 DASH_Dam1 PF08653.10 gi|292654597|ref|YP_003534494.1| - 0.046 13.5 7.9 26 4.7 0.1 5.7 6 0 0 6 6 5 0 DASH complex subunit Dam1 IFT57 PF10498.9 gi|292654597|ref|YP_003534494.1| - 0.056 12.4 8.8 0.34 9.8 0.7 3.0 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 CALCOCO1 PF07888.11 gi|292654597|ref|YP_003534494.1| - 0.097 11.5 15.4 0.57 9.0 6.6 2.4 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF489 PF04356.12 gi|292654597|ref|YP_003534494.1| - 0.13 12.3 7.0 0.41 10.6 1.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF489) Syntaxin-6_N PF09177.11 gi|292654597|ref|YP_003534494.1| - 0.13 12.8 23.0 0.18 12.4 3.6 4.8 2 2 2 4 4 4 0 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|292654597|ref|YP_003534494.1| - 0.17 12.4 21.5 6.3 7.3 0.6 6.4 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|292654597|ref|YP_003534494.1| - 0.17 11.9 20.5 0.57 10.2 1.3 4.6 3 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus PLU-1 PF08429.11 gi|292654597|ref|YP_003534494.1| - 0.35 10.0 5.4 2.6 7.1 5.4 2.2 1 1 0 1 1 1 0 PLU-1-like protein Spectrin PF00435.21 gi|292654597|ref|YP_003534494.1| - 0.41 11.2 13.3 3.4 8.2 0.9 4.2 2 1 3 5 5 5 0 Spectrin repeat TRPM_tetra PF16519.5 gi|292654597|ref|YP_003534494.1| - 0.52 10.5 3.3 27 5.0 0.0 3.7 4 0 0 4 4 3 0 Tetramerisation domain of TRPM Mating_N PF12731.7 gi|292654597|ref|YP_003534494.1| - 0.67 10.1 13.8 0.59 10.3 0.3 4.1 4 1 0 4 4 3 0 Mating-type protein beta 1 LOH1CR12 PF10158.9 gi|292654597|ref|YP_003534494.1| - 0.83 9.7 6.7 6.2 6.8 0.3 3.8 2 2 1 4 4 4 0 Tumour suppressor protein Seryl_tRNA_N PF02403.22 gi|292654597|ref|YP_003534494.1| - 0.84 9.9 15.3 2.2 8.5 0.3 4.5 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Taxilin PF09728.9 gi|292654597|ref|YP_003534494.1| - 1 8.5 5.4 4.8 6.3 0.1 3.0 2 1 1 3 3 3 0 Myosin-like coiled-coil protein Allexi_40kDa PF05549.11 gi|292654597|ref|YP_003534494.1| - 1 8.8 9.4 0.81 9.1 0.8 2.8 1 1 2 3 3 3 0 Allexivirus 40kDa protein Laminin_II PF06009.12 gi|292654597|ref|YP_003534494.1| - 1 9.3 27.0 1.3 9.0 0.5 4.9 3 2 2 5 5 4 0 Laminin Domain II DUF16 PF01519.16 gi|292654597|ref|YP_003534494.1| - 1.1 9.8 10.8 17 6.0 0.3 4.3 2 1 2 4 4 4 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|292654597|ref|YP_003534494.1| - 1.1 7.1 7.0 0.88 7.4 1.6 2.3 1 1 1 2 2 2 0 Prominin Spc7 PF08317.11 gi|292654597|ref|YP_003534494.1| - 1.6 7.6 20.9 0.98 8.2 2.5 3.3 1 1 1 3 3 3 0 Spc7 kinetochore protein DUF2203 PF09969.9 gi|292654597|ref|YP_003534494.1| - 1.7 9.3 22.0 4.9 7.9 1.9 4.7 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) GAS PF13851.6 gi|292654597|ref|YP_003534494.1| - 2.3 7.5 7.7 0.64 9.3 0.1 2.9 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding Rootletin PF15035.6 gi|292654597|ref|YP_003534494.1| - 2.6 8.0 5.0 0.37 10.8 0.3 2.0 2 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion FlaC_arch PF05377.11 gi|292654597|ref|YP_003534494.1| - 2.6 8.5 17.0 21 5.6 0.5 5.5 3 2 1 5 5 5 0 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|292654597|ref|YP_003534494.1| - 2.7 8.2 26.7 0.12 12.6 8.0 3.8 2 1 1 4 4 4 0 Autophagy protein 16 (ATG16) COG6 PF06419.11 gi|292654597|ref|YP_003534494.1| - 3.1 5.9 7.9 3.4 5.8 0.3 3.1 2 2 1 3 3 3 0 Conserved oligomeric complex COG6 TMPIT PF07851.13 gi|292654597|ref|YP_003534494.1| - 3.6 6.7 8.0 4.5 6.4 0.3 3.2 2 2 1 3 3 3 0 TMPIT-like protein V_ATPase_I PF01496.19 gi|292654597|ref|YP_003534494.1| - 3.8 5.3 11.1 49 1.6 11.1 2.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GP20 PF06810.11 gi|292654597|ref|YP_003534494.1| - 4.6 7.0 16.1 4.7 7.0 4.5 4.5 2 2 1 3 3 3 0 Phage minor structural protein GP20 CdvA PF18822.1 gi|292654597|ref|YP_003534494.1| - 4.8 7.0 9.8 5.5 6.8 1.3 3.9 2 2 1 3 3 3 0 CdvA-like coiled-coil domain HAP1_N PF04849.13 gi|292654597|ref|YP_003534494.1| - 6.5 5.9 16.0 7.2 5.7 1.6 3.2 2 2 1 3 3 3 0 HAP1 N-terminal conserved region DUF4559 PF15112.6 gi|292654597|ref|YP_003534494.1| - 9.8 5.8 11.6 2.4 7.8 1.1 2.6 1 1 3 4 4 4 0 Domain of unknown function (DUF4559) T2SSE PF00437.20 gi|292654598|ref|YP_003534495.1| - 2e-13 50.1 0.0 3.4e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|292654598|ref|YP_003534495.1| - 0.00058 20.3 0.0 0.0016 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain KH_1 PF00013.29 gi|292654598|ref|YP_003534495.1| - 0.0017 18.1 0.1 0.0045 16.8 0.1 1.7 1 0 0 1 1 1 1 KH domain Thymidylate_kin PF02223.17 gi|292654598|ref|YP_003534495.1| - 0.0026 17.5 0.0 0.013 15.2 0.0 1.9 1 1 1 2 2 2 1 Thymidylate kinase NTPase_1 PF03266.15 gi|292654598|ref|YP_003534495.1| - 0.0029 17.5 0.0 0.008 16.1 0.0 1.8 1 0 0 1 1 1 1 NTPase Zeta_toxin PF06414.12 gi|292654598|ref|YP_003534495.1| - 0.0043 16.4 0.0 0.0094 15.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.6 gi|292654598|ref|YP_003534495.1| - 0.0083 16.7 0.0 0.023 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292654598|ref|YP_003534495.1| - 0.009 16.2 0.0 0.037 14.2 0.0 2.1 2 0 0 2 2 1 1 AAA domain KH_2 PF07650.17 gi|292654598|ref|YP_003534495.1| - 0.011 15.6 0.8 0.031 14.1 0.8 1.8 1 0 0 1 1 1 0 KH domain AAA_29 PF13555.6 gi|292654598|ref|YP_003534495.1| - 0.017 14.9 0.0 0.048 13.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|292654598|ref|YP_003534495.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|292654598|ref|YP_003534495.1| - 0.02 14.2 0.1 0.17 11.2 0.0 2.5 4 0 0 4 4 4 0 KaiC AAA_30 PF13604.6 gi|292654598|ref|YP_003534495.1| - 0.021 14.6 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|292654598|ref|YP_003534495.1| - 0.022 14.7 0.0 0.047 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|292654598|ref|YP_003534495.1| - 0.023 14.5 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|292654598|ref|YP_003534495.1| - 0.037 13.5 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|292654598|ref|YP_003534495.1| - 0.041 14.3 0.0 0.085 13.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|292654598|ref|YP_003534495.1| - 0.058 13.1 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain KH_5 PF13184.6 gi|292654598|ref|YP_003534495.1| - 0.059 13.5 0.9 0.16 12.1 0.1 2.1 2 0 0 2 2 1 0 NusA-like KH domain TsaE PF02367.17 gi|292654598|ref|YP_003534495.1| - 0.068 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|292654598|ref|YP_003534495.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|292654598|ref|YP_003534495.1| - 0.089 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|292654598|ref|YP_003534495.1| - 0.096 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|292654598|ref|YP_003534495.1| - 0.13 12.4 0.0 0.39 10.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|292654598|ref|YP_003534495.1| - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|292654598|ref|YP_003534495.1| - 0.14 12.7 0.0 0.33 11.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter KH_4 PF13083.6 gi|292654598|ref|YP_003534495.1| - 0.26 11.2 2.0 0.47 10.3 0.6 2.3 2 0 0 2 2 2 0 KH domain HTH_24 PF13412.6 gi|292654599|ref|YP_003534496.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292654599|ref|YP_003534496.1| - 0.0043 16.9 0.1 0.0055 16.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|292654599|ref|YP_003534496.1| - 0.0066 16.4 0.0 0.0098 15.8 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|292654599|ref|YP_003534496.1| - 0.01 15.5 0.1 0.015 14.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|292654599|ref|YP_003534496.1| - 0.012 16.1 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|292654599|ref|YP_003534496.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain MarR_2 PF12802.7 gi|292654599|ref|YP_003534496.1| - 0.015 15.1 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|292654599|ref|YP_003534496.1| - 0.072 13.0 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.12 gi|292654599|ref|YP_003534496.1| - 0.083 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF1634 PF07843.11 gi|292654600|ref|YP_003534497.1| - 0.00022 21.2 7.0 0.00057 19.9 7.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) ABC_tran PF00005.27 gi|292654601|ref|YP_003534498.1| - 2.1e-39 135.2 0.0 5.9e-20 72.2 0.0 3.0 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|292654601|ref|YP_003534498.1| - 1.9e-14 53.6 4.0 0.00029 20.3 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|292654601|ref|YP_003534498.1| - 5.3e-11 42.2 0.3 1.1e-10 41.2 0.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|292654601|ref|YP_003534498.1| - 1.7e-10 41.2 7.0 0.061 13.1 0.2 4.2 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|292654601|ref|YP_003534498.1| - 5.6e-08 33.3 0.1 0.0048 17.3 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|292654601|ref|YP_003534498.1| - 1.8e-07 31.9 0.1 0.017 15.6 0.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|292654601|ref|YP_003534498.1| - 4.1e-05 23.9 0.0 0.06 13.6 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|292654601|ref|YP_003534498.1| - 4.6e-05 23.8 0.0 0.051 14.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|292654601|ref|YP_003534498.1| - 0.0001 22.0 0.3 0.21 11.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|292654601|ref|YP_003534498.1| - 0.00044 20.6 0.0 1.2 9.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|292654601|ref|YP_003534498.1| - 0.00057 19.7 0.1 0.92 9.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain Fer4 PF00037.27 gi|292654601|ref|YP_003534498.1| - 0.00057 19.6 1.6 0.00057 19.6 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_14 PF13173.6 gi|292654601|ref|YP_003534498.1| - 0.00057 19.9 0.0 1.9 8.5 0.0 3.5 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|292654601|ref|YP_003534498.1| - 0.0012 18.7 0.2 1.7 8.5 0.0 2.6 2 0 0 2 2 2 2 NACHT domain RsgA_GTPase PF03193.16 gi|292654601|ref|YP_003534498.1| - 0.0013 18.7 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase NB-ARC PF00931.22 gi|292654601|ref|YP_003534498.1| - 0.0015 17.7 0.0 0.43 9.7 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_25 PF13481.6 gi|292654601|ref|YP_003534498.1| - 0.0016 18.1 3.2 8.8 5.8 0.0 3.8 4 0 0 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|292654601|ref|YP_003534498.1| - 0.0025 18.0 0.1 2.6 8.2 0.2 3.0 2 1 0 2 2 2 1 AAA domain Fer4_6 PF12837.7 gi|292654601|ref|YP_003534498.1| - 0.0029 17.6 11.9 0.0086 16.1 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|292654601|ref|YP_003534498.1| - 0.0038 17.2 0.0 0.58 10.1 0.0 2.8 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|292654601|ref|YP_003534498.1| - 0.0058 16.4 0.5 4.3 6.9 0.1 2.8 3 0 0 3 3 3 1 AAA ATPase domain SbcCD_C PF13558.6 gi|292654601|ref|YP_003534498.1| - 0.013 15.8 0.0 8.3 6.7 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|292654601|ref|YP_003534498.1| - 0.015 15.6 0.4 1.7 8.9 0.0 3.3 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|292654601|ref|YP_003534498.1| - 0.018 15.1 0.1 6 7.0 0.1 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_7 PF12838.7 gi|292654601|ref|YP_003534498.1| - 0.031 14.9 9.5 0.068 13.8 9.5 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain MukB PF04310.12 gi|292654601|ref|YP_003534498.1| - 0.036 13.9 0.4 6.6 6.5 0.1 2.3 2 0 0 2 2 2 0 MukB N-terminal AAA_5 PF07728.14 gi|292654601|ref|YP_003534498.1| - 0.047 13.7 0.0 7.9 6.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|292654601|ref|YP_003534498.1| - 0.049 14.2 0.0 4 8.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain Fer4_10 PF13237.6 gi|292654601|ref|YP_003534498.1| - 0.051 13.7 11.3 0.2 11.8 11.8 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain RuvB_N PF05496.12 gi|292654601|ref|YP_003534498.1| - 0.052 13.3 0.2 19 5.0 0.0 2.9 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain SRP54 PF00448.22 gi|292654601|ref|YP_003534498.1| - 0.12 12.0 0.1 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|292654601|ref|YP_003534498.1| - 0.14 11.9 0.5 9.2 6.0 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_2 PF12797.7 gi|292654601|ref|YP_003534498.1| - 0.23 11.7 11.3 0.17 12.1 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|292654601|ref|YP_003534498.1| - 0.43 10.8 9.7 0.89 9.8 9.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|292654601|ref|YP_003534498.1| - 0.49 10.6 7.8 0.89 9.7 7.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|292654601|ref|YP_003534498.1| - 1.1 9.1 4.1 26 4.7 0.1 3.2 4 0 0 4 4 4 0 NTPase Fer4_16 PF13484.6 gi|292654601|ref|YP_003534498.1| - 5.5 8.0 8.7 0.8 10.7 1.4 2.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Glyoxalase PF00903.25 gi|292654602|ref|YP_003534499.1| - 1.1e-17 64.5 0.2 5.1e-09 36.4 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|292654602|ref|YP_003534499.1| - 1.5e-09 38.6 7.6 5.4e-08 33.6 0.9 3.0 2 1 0 2 2 2 2 Glyoxalase-like domain PBP PF01161.20 gi|292654603|ref|YP_003534500.1| - 3.9e-34 117.8 0.0 4.7e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RTC PF01137.21 gi|292654604|ref|YP_003534501.1| - 2.3e-68 229.7 0.0 2.8e-68 229.4 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|292654604|ref|YP_003534501.1| - 6.5e-09 36.2 0.4 1.9e-08 34.7 0.4 1.8 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Usp PF00582.26 gi|292654605|ref|YP_003534502.1| - 4e-27 95.5 5.7 7.3e-27 94.6 5.7 1.4 1 1 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|292654605|ref|YP_003534502.1| - 0.00016 21.2 0.3 0.00021 20.8 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Peptidase_M54 PF07998.11 gi|292654606|ref|YP_003534503.1| - 2.4e-22 79.9 0.1 2.9e-22 79.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|292654606|ref|YP_003534503.1| - 3.7e-05 23.6 0.0 3.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.6 gi|292654606|ref|YP_003534503.1| - 4.7e-05 23.1 0.0 5.5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|292654606|ref|YP_003534503.1| - 8.5e-05 21.9 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Met-zincin Reprolysin_2 PF13574.6 gi|292654606|ref|YP_003534503.1| - 0.00081 19.3 0.0 0.00095 19.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|292654606|ref|YP_003534503.1| - 0.00081 19.9 0.0 0.001 19.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|292654606|ref|YP_003534503.1| - 0.0012 19.0 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Zincin_1 PF06262.11 gi|292654606|ref|YP_003534503.1| - 0.0063 16.6 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Zincin-like metallopeptidase Peptidase_M57 PF12388.8 gi|292654606|ref|YP_003534503.1| - 0.022 14.4 0.7 0.072 12.7 0.3 1.8 1 1 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Peptidase_M66 PF10462.9 gi|292654606|ref|YP_003534503.1| - 0.025 13.6 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.8 gi|292654606|ref|YP_003534503.1| - 0.028 13.0 0.1 0.038 12.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.13 gi|292654606|ref|YP_003534503.1| - 0.051 13.5 0.1 0.078 12.9 0.1 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin PF01421.19 gi|292654606|ref|YP_003534503.1| - 0.053 13.4 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease UPF0146 PF03686.13 gi|292654607|ref|YP_003534504.1| - 7.4e-22 77.6 0.1 8.9e-22 77.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Hydrolase PF00702.26 gi|292654608|ref|YP_003534505.1| - 2.2e-10 41.2 3.3 7.7e-10 39.4 3.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|292654608|ref|YP_003534505.1| - 4.1e-10 40.0 0.0 4.8e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292654608|ref|YP_003534505.1| - 5.8e-06 26.3 0.6 5.8e-06 26.3 0.6 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Lactamase_B PF00753.27 gi|292654608|ref|YP_003534505.1| - 0.02 14.9 1.3 0.038 14.0 1.3 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily ABC_tran_2 PF16949.5 gi|292654609|ref|YP_003534506.1| - 0.046 12.5 0.6 0.052 12.4 0.6 1.0 1 0 0 1 1 1 0 Putative ATP-binding cassette F420_oxidored PF03807.17 gi|292654610|ref|YP_003534507.1| - 9.8e-22 77.4 0.0 1.5e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|292654610|ref|YP_003534507.1| - 4.6e-05 23.7 0.0 8.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|292654610|ref|YP_003534507.1| - 0.0018 18.5 0.0 0.0033 17.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|292654610|ref|YP_003534507.1| - 0.0037 18.1 0.0 0.0068 17.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|292654610|ref|YP_003534507.1| - 0.0051 17.2 0.0 0.0075 16.7 0.0 1.3 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.16 gi|292654610|ref|YP_003534507.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|292654610|ref|YP_003534507.1| - 0.014 14.4 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase KR PF08659.10 gi|292654610|ref|YP_003534507.1| - 0.046 13.6 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 KR domain NAD_Gly3P_dh_N PF01210.23 gi|292654610|ref|YP_003534507.1| - 0.046 13.7 0.0 0.088 12.8 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MFS_1 PF07690.16 gi|292654611|ref|YP_003534508.1| - 9.4e-38 130.0 49.1 3.7e-21 75.5 32.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.21 gi|292654611|ref|YP_003534508.1| - 0.0045 15.9 2.7 0.0045 15.9 2.7 2.5 3 0 0 3 3 3 1 POT family MFS_1_like PF12832.7 gi|292654611|ref|YP_003534508.1| - 4.3 6.1 13.1 0.25 10.2 2.4 2.6 3 1 0 3 3 3 0 MFS_1 like family PRA-PH PF01503.17 gi|292654612|ref|YP_003534509.1| - 5.3e-15 55.6 1.2 6.4e-15 55.4 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Calpain_inhib PF00748.19 gi|292654612|ref|YP_003534509.1| - 0.16 12.5 0.2 0.16 12.5 0.2 1.8 2 1 0 2 2 2 0 Calpain inhibitor MazG PF03819.17 gi|292654612|ref|YP_003534509.1| - 0.24 11.6 3.2 0.18 12.0 1.6 1.6 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain SNO PF01174.19 gi|292654613|ref|YP_003534510.1| - 2.4e-53 180.8 0.0 2.8e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|292654613|ref|YP_003534510.1| - 1.1e-10 41.5 0.0 2.2e-10 40.5 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|292654613|ref|YP_003534510.1| - 2.1e-05 24.4 0.1 4.1e-05 23.4 0.1 1.5 2 0 0 2 2 2 1 DJ-1/PfpI family Peptidase_S51 PF03575.17 gi|292654613|ref|YP_003534510.1| - 0.00013 21.6 0.0 0.00018 21.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|292654613|ref|YP_003534510.1| - 0.00037 20.3 0.0 0.0013 18.6 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|292654613|ref|YP_003534510.1| - 0.074 12.7 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 ThiJ/PfpI family-like BPL_N PF09825.9 gi|292654613|ref|YP_003534510.1| - 0.19 10.8 0.0 0.84 8.6 0.0 1.8 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Sec61_beta PF03911.16 gi|292654614|ref|YP_003534511.1| - 1.5e-14 53.7 0.0 2e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family NDUF_B4 PF07225.12 gi|292654614|ref|YP_003534511.1| - 0.17 11.8 0.0 0.17 11.8 0.0 1.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) Thioredoxin PF00085.20 gi|292654615|ref|YP_003534512.1| - 7.1e-23 80.6 0.0 8.5e-23 80.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|292654615|ref|YP_003534512.1| - 7.8e-08 32.7 0.3 1e-06 29.2 0.3 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|292654615|ref|YP_003534512.1| - 1.3e-07 31.9 0.0 9.9e-06 25.8 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|292654615|ref|YP_003534512.1| - 0.00012 21.9 0.0 0.00013 21.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|292654615|ref|YP_003534512.1| - 0.00024 21.0 0.0 0.00025 20.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|292654615|ref|YP_003534512.1| - 0.00025 21.0 0.0 0.00028 20.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|292654615|ref|YP_003534512.1| - 0.00029 20.6 0.3 0.19 11.5 0.0 2.0 1 1 1 2 2 2 2 Redoxin Glutaredoxin PF00462.24 gi|292654615|ref|YP_003534512.1| - 0.0023 18.1 0.1 0.0038 17.4 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_7 PF13899.6 gi|292654615|ref|YP_003534512.1| - 0.0035 17.5 0.3 0.015 15.4 0.3 2.0 1 1 0 1 1 1 1 Thioredoxin-like DSBA PF01323.20 gi|292654615|ref|YP_003534512.1| - 0.0064 16.3 0.3 0.045 13.5 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain OST3_OST6 PF04756.13 gi|292654615|ref|YP_003534512.1| - 0.015 14.7 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|292654615|ref|YP_003534512.1| - 0.029 14.8 0.1 0.033 14.6 0.1 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|292654615|ref|YP_003534512.1| - 0.031 14.0 0.2 0.033 13.9 0.2 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_3 PF13192.6 gi|292654615|ref|YP_003534512.1| - 0.034 14.2 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain Phosducin PF02114.16 gi|292654615|ref|YP_003534512.1| - 0.07 12.1 0.0 0.074 12.0 0.0 1.0 1 0 0 1 1 1 0 Phosducin Ribosomal_L40e PF01020.17 gi|292654616|ref|YP_003534513.1| - 7.8e-07 28.9 8.7 9.2e-07 28.7 8.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|292654616|ref|YP_003534513.1| - 4.6e-05 23.0 2.5 5.7e-05 22.7 2.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|292654616|ref|YP_003534513.1| - 0.00026 21.0 2.1 0.00027 20.9 2.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|292654616|ref|YP_003534513.1| - 0.005 16.5 5.6 0.0085 15.7 5.6 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|292654616|ref|YP_003534513.1| - 0.0051 17.3 2.8 0.0051 17.3 2.8 1.1 1 0 0 1 1 1 1 CHY zinc finger Ribosomal_L37e PF01907.19 gi|292654616|ref|YP_003534513.1| - 0.038 14.1 5.1 0.048 13.8 5.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e DHHC PF01529.20 gi|292654616|ref|YP_003534513.1| - 0.15 12.1 3.6 0.17 12.0 3.6 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase 7TM-7TMR_HD PF07698.11 gi|292654617|ref|YP_003534514.1| - 0.028 14.2 2.4 0.039 13.7 2.4 1.2 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase Lactamase_B PF00753.27 gi|292654618|ref|YP_003534515.1| - 3.4e-17 63.1 11.7 3.2e-15 56.7 11.7 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292654618|ref|YP_003534515.1| - 9.8e-06 25.2 2.7 6.8e-05 22.5 2.7 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|292654618|ref|YP_003534515.1| - 0.015 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292654618|ref|YP_003534515.1| - 0.06 13.2 1.1 0.095 12.6 1.2 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF99 PF01949.16 gi|292654620|ref|YP_003534517.1| - 4.2e-59 199.0 0.0 7.3e-59 198.3 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.19 gi|292654621|ref|YP_003534518.1| - 2.9e-38 131.3 0.0 3.5e-38 131.0 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.27 gi|292654623|ref|YP_003534520.1| - 2.1e-33 115.7 0.0 2.9e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292654623|ref|YP_003534520.1| - 1.8e-06 28.0 0.1 0.013 15.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|292654623|ref|YP_003534520.1| - 2.8e-05 24.1 0.0 5.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|292654623|ref|YP_003534520.1| - 4.9e-05 23.8 0.0 8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|292654623|ref|YP_003534520.1| - 0.00064 19.2 0.0 0.12 11.7 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292654623|ref|YP_003534520.1| - 0.0013 18.4 0.1 0.003 17.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|292654623|ref|YP_003534520.1| - 0.0037 17.5 0.3 0.019 15.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|292654623|ref|YP_003534520.1| - 0.007 16.9 0.0 0.013 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|292654623|ref|YP_003534520.1| - 0.027 14.7 0.2 2 8.7 0.5 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|292654623|ref|YP_003534520.1| - 0.027 13.3 0.0 0.039 12.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Zeta_toxin PF06414.12 gi|292654623|ref|YP_003534520.1| - 0.035 13.4 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|292654623|ref|YP_003534520.1| - 0.041 14.0 0.1 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|292654623|ref|YP_003534520.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|292654623|ref|YP_003534520.1| - 0.076 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|292654623|ref|YP_003534520.1| - 0.21 11.5 0.1 0.4 10.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PEX-2N PF09263.10 gi|292654623|ref|YP_003534520.1| - 0.21 11.9 0.1 1.9 8.9 0.0 2.2 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Phosphonate-bd PF12974.7 gi|292654624|ref|YP_003534521.1| - 1.2e-58 198.6 0.7 1.5e-58 198.3 0.7 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|292654624|ref|YP_003534521.1| - 0.005 16.8 0.0 0.0077 16.2 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|292654624|ref|YP_003534521.1| - 0.15 11.4 0.8 0.48 9.8 0.1 2.1 2 1 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 SSP160 PF06933.11 gi|292654624|ref|YP_003534521.1| - 0.4 8.8 7.9 0.61 8.2 7.9 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 GATase PF00117.28 gi|292654625|ref|YP_003534522.1| - 3.3e-22 79.2 0.0 3.9e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|292654625|ref|YP_003534522.1| - 9.6e-09 35.1 0.0 1.7e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|292654625|ref|YP_003534522.1| - 1.7e-06 28.0 0.0 0.00077 19.4 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|292654625|ref|YP_003534522.1| - 1.3e-05 25.1 0.3 0.00011 22.0 0.3 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|292654625|ref|YP_003534522.1| - 0.00092 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family PDT PF00800.18 gi|292654626|ref|YP_003534523.1| - 6.8e-47 159.6 0.3 8.3e-47 159.4 0.3 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|292654626|ref|YP_003534523.1| - 2.1e-06 27.4 0.0 7.5e-06 25.6 0.0 1.9 2 0 0 2 2 2 1 ACT domain TIP39 PF14980.6 gi|292654626|ref|YP_003534523.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.6 1 0 0 1 1 1 0 TIP39 peptide HSP20 PF00011.21 gi|292654627|ref|YP_003534524.1| - 5.3e-24 84.3 0.4 6.5e-24 84.0 0.4 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|292654627|ref|YP_003534524.1| - 5.4e-16 57.9 0.1 8.1e-16 57.3 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|292654627|ref|YP_003534524.1| - 0.091 13.8 0.0 0.12 13.4 0.0 1.2 1 0 0 1 1 1 0 CS domain MazE_antitoxin PF04014.18 gi|292654627|ref|YP_003534524.1| - 0.41 10.6 1.8 3.1 7.8 0.1 2.9 2 2 1 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin HSP20 PF00011.21 gi|292654628|ref|YP_003534525.1| - 1.8e-21 76.2 0.0 2.6e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|292654628|ref|YP_003534525.1| - 1.8e-15 56.2 0.0 2.8e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|292654628|ref|YP_003534525.1| - 0.03 14.7 0.0 0.046 14.1 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain DASH_Hsk3 PF08227.11 gi|292654628|ref|YP_003534525.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like MAPKK1_Int PF08923.10 gi|292654628|ref|YP_003534525.1| - 0.19 11.6 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting tRNA-synt_1 PF00133.22 gi|292654629|ref|YP_003534526.1| - 4.8e-53 180.3 0.0 3.9e-42 144.3 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|292654629|ref|YP_003534526.1| - 1.3e-21 76.8 0.6 9.2e-10 37.8 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|292654629|ref|YP_003534526.1| - 5.9e-21 75.0 0.1 1e-20 74.3 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|292654629|ref|YP_003534526.1| - 2.9e-09 36.7 0.0 5.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|292654629|ref|YP_003534526.1| - 2.4e-05 23.8 0.0 0.085 12.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|292654629|ref|YP_003534526.1| - 0.0014 17.7 0.0 0.032 13.1 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) NapE PF06796.11 gi|292654630|ref|YP_003534527.1| - 0.051 13.1 0.5 0.07 12.7 0.5 1.4 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE OCD_Mu_crystall PF02423.15 gi|292654631|ref|YP_003534528.1| - 2.6e-96 322.3 0.1 3e-96 322.1 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|292654631|ref|YP_003534528.1| - 0.032 14.3 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cpn60_TCP1 PF00118.24 gi|292654632|ref|YP_003534529.1| - 1.8e-166 554.6 14.9 2.1e-166 554.4 14.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HBM PF16591.5 gi|292654632|ref|YP_003534529.1| - 0.027 13.9 0.2 0.081 12.3 0.2 1.8 1 0 0 1 1 1 0 Helical bimodular sensor domain CBM_6 PF03422.15 gi|292654633|ref|YP_003534530.1| - 0.0094 16.3 0.1 0.015 15.6 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) Ribonuc_L-PSP PF01042.21 gi|292654635|ref|YP_003534532.1| - 9.1e-41 138.7 0.2 1e-40 138.5 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|292654635|ref|YP_003534532.1| - 0.015 15.4 0.1 0.023 14.8 0.1 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease Cyt_bd_oxida_II PF02322.15 gi|292654637|ref|YP_003534534.1| - 2.7e-73 247.0 36.9 3.1e-73 246.8 36.9 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II CEND1 PF15677.5 gi|292654637|ref|YP_003534534.1| - 2.8 8.5 3.3 8.4 6.9 2.5 2.0 2 0 0 2 2 2 0 Cell cycle exit and neuronal differentiation protein 1 Cyt_bd_oxida_I PF01654.17 gi|292654638|ref|YP_003534535.1| - 2.5e-148 494.2 20.2 2.9e-148 494.0 20.2 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I PALP PF00291.25 gi|292654640|ref|YP_003534537.1| - 1.2e-87 294.0 5.6 1.6e-87 293.7 5.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|292654640|ref|YP_003534537.1| - 4.6e-07 30.3 0.1 6.9e-06 26.6 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|292654640|ref|YP_003534537.1| - 0.0068 16.2 1.6 0.017 14.9 0.1 2.3 2 0 0 2 2 2 1 ACT domain FtsA PF14450.6 gi|292654640|ref|YP_003534537.1| - 0.016 15.6 0.1 0.071 13.5 0.1 1.7 2 1 0 2 2 2 0 Cell division protein FtsA Pep_deformylase PF01327.21 gi|292654640|ref|YP_003534537.1| - 0.15 11.7 1.1 9.1 5.9 0.1 3.1 2 1 1 3 3 3 0 Polypeptide deformylase LIME1 PF15332.6 gi|292654640|ref|YP_003534537.1| - 0.16 11.5 0.1 0.28 10.7 0.1 1.3 1 0 0 1 1 1 0 Lck-interacting transmembrane adapter 1 MatE PF01554.18 gi|292654641|ref|YP_003534538.1| - 4.2e-29 101.3 22.3 7.9e-20 71.1 7.9 3.0 4 0 0 4 4 4 2 MatE MurJ PF03023.14 gi|292654641|ref|YP_003534538.1| - 5.8e-09 35.1 5.2 1.2e-08 34.1 5.2 1.4 1 0 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 gi|292654641|ref|YP_003534538.1| - 7.9e-08 32.5 17.1 1e-06 28.9 1.8 3.6 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Citrate_synt PF00285.21 gi|292654642|ref|YP_003534539.1| - 2.9e-124 414.8 0.0 3.4e-124 414.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TrkA_C PF02080.21 gi|292654643|ref|YP_003534540.1| - 1.5e-27 95.3 0.8 5e-16 58.3 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|292654643|ref|YP_003534540.1| - 1.4e-19 70.3 7.6 1.2e-10 41.8 2.5 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|292654643|ref|YP_003534540.1| - 0.00067 19.0 0.2 0.84 8.9 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 HALZ PF02183.18 gi|292654643|ref|YP_003534540.1| - 0.027 14.7 0.1 7.6 6.8 0.1 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.15 gi|292654643|ref|YP_003534540.1| - 0.11 12.3 0.9 17 5.2 0.0 2.4 2 0 0 2 2 2 0 Septum formation initiator CLZ PF16526.5 gi|292654643|ref|YP_003534540.1| - 0.13 12.6 1.3 4.8 7.6 0.0 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KfrA_N PF11740.8 gi|292654643|ref|YP_003534540.1| - 0.2 12.3 0.1 0.2 12.3 0.1 3.6 3 1 0 4 4 4 0 Plasmid replication region DNA-binding N-term HalX PF08663.10 gi|292654643|ref|YP_003534540.1| - 3.9 7.9 8.2 15 6.0 0.9 3.1 2 1 1 3 3 3 0 HalX domain DUF2474 PF10617.9 gi|292654644|ref|YP_003534541.1| - 0.065 13.1 1.3 0.065 13.1 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) AstE_AspA PF04952.14 gi|292654645|ref|YP_003534542.1| - 4.4e-56 190.1 0.0 5e-56 189.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|292654646|ref|YP_003534543.1| - 2.1e-59 201.4 3.6 2.4e-59 201.2 3.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OprD PF03573.13 gi|292654646|ref|YP_003534543.1| - 0.13 11.3 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 outer membrane porin, OprD family Rubredoxin_2 PF18073.1 gi|292654646|ref|YP_003534543.1| - 0.13 12.0 6.4 0.23 11.2 6.4 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF4140 PF13600.6 gi|292654647|ref|YP_003534544.1| - 0.043 14.2 1.1 0.2 12.1 0.3 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) JIP_LZII PF16471.5 gi|292654647|ref|YP_003534544.1| - 0.24 11.6 1.7 0.47 10.7 1.7 1.4 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II betaPIX_CC PF16523.5 gi|292654647|ref|YP_003534544.1| - 0.84 9.5 3.3 1.6 8.6 3.3 1.4 1 0 0 1 1 1 0 betaPIX coiled coil DUF2892 PF11127.8 gi|292654648|ref|YP_003534545.1| - 7.5e-14 51.5 5.2 5.9e-13 48.7 5.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) PCMT PF01135.19 gi|292654650|ref|YP_003534547.1| - 1.2e-36 126.5 0.0 1.5e-36 126.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|292654650|ref|YP_003534547.1| - 4.9e-07 30.4 0.1 9.8e-07 29.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654650|ref|YP_003534547.1| - 7.1e-07 29.1 0.0 1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|292654650|ref|YP_003534547.1| - 9.7e-06 25.2 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|292654650|ref|YP_003534547.1| - 1.6e-05 24.7 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|292654650|ref|YP_003534547.1| - 0.0019 18.9 0.0 0.0029 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292654650|ref|YP_003534547.1| - 0.0033 18.0 0.0 0.0051 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|292654650|ref|YP_003534547.1| - 0.0037 16.4 0.0 0.0053 15.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|292654650|ref|YP_003534547.1| - 0.023 13.8 0.0 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Methyltransf_32 PF13679.6 gi|292654650|ref|YP_003534547.1| - 0.025 14.6 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|292654650|ref|YP_003534547.1| - 0.062 13.0 0.0 0.31 10.7 0.0 1.8 1 1 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|292654650|ref|YP_003534547.1| - 0.065 13.2 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|292654650|ref|YP_003534547.1| - 0.086 12.2 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|292654650|ref|YP_003534547.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|292654651|ref|YP_003534548.1| - 6.9e-06 26.0 0.0 0.0002 21.2 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292654651|ref|YP_003534548.1| - 2e-05 25.2 0.1 4e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|292654651|ref|YP_003534548.1| - 2.3e-05 23.8 0.1 3.1e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|292654651|ref|YP_003534548.1| - 0.0001 22.2 0.0 0.00023 21.1 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_11 PF08241.12 gi|292654651|ref|YP_003534548.1| - 0.00025 21.7 0.1 0.00048 20.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MarR_2 PF12802.7 gi|292654651|ref|YP_003534548.1| - 0.024 14.5 0.1 0.1 12.5 0.1 2.1 1 0 0 1 1 1 0 MarR family SLH PF00395.20 gi|292654651|ref|YP_003534548.1| - 0.059 13.4 0.1 0.16 12.0 0.1 1.7 1 0 0 1 1 1 0 S-layer homology domain DUF4423 PF14394.6 gi|292654651|ref|YP_003534548.1| - 0.2 11.3 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Zn_Tnp_IS1 PF03811.13 gi|292654652|ref|YP_003534549.1| - 0.019 14.6 4.0 0.082 12.7 2.6 2.4 2 0 0 2 2 2 0 InsA N-terminal domain DUF2387 PF09526.10 gi|292654652|ref|YP_003534549.1| - 0.044 13.9 0.9 0.095 12.9 0.9 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.6 gi|292654652|ref|YP_003534549.1| - 1.9 8.5 5.6 11 6.0 5.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Bac_rhamnosid_C PF17390.2 gi|292654652|ref|YP_003534549.1| - 7.4 6.4 6.7 12 5.8 0.1 3.1 2 2 1 3 3 3 0 Bacterial alpha-L-rhamnosidase C-terminal domain Peptidase_M29 PF02073.15 gi|292654653|ref|YP_003534550.1| - 1.9e-12 46.7 0.2 1.6e-10 40.3 0.1 2.0 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Paramyxo_P_V_N PF13825.6 gi|292654653|ref|YP_003534550.1| - 0.075 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Paramyxovirus structural protein V/P N-terminus Gp_dh_C PF02800.20 gi|292654654|ref|YP_003534551.1| - 7.8e-17 61.3 0.0 1.2e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|292654654|ref|YP_003534551.1| - 1.2e-10 41.6 0.0 2.6e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|292654654|ref|YP_003534551.1| - 3.3e-05 24.2 0.2 0.0002 21.6 0.0 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|292654654|ref|YP_003534551.1| - 6e-05 23.7 0.0 0.00025 21.7 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|292654654|ref|YP_003534551.1| - 0.00092 18.6 0.1 0.046 13.1 0.1 2.3 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|292654654|ref|YP_003534551.1| - 0.0028 18.5 0.0 0.02 15.7 0.0 2.2 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.7 gi|292654655|ref|YP_003534552.1| - 1.3e-34 119.8 2.2 1.5e-34 119.6 2.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292654655|ref|YP_003534552.1| - 3e-07 31.1 5.8 3.1e-06 27.8 2.2 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|292654655|ref|YP_003534552.1| - 0.00031 20.2 0.1 0.0077 15.6 0.0 2.1 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily PGK PF00162.19 gi|292654656|ref|YP_003534553.1| - 6.2e-102 341.4 0.0 7.1e-102 341.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|292654657|ref|YP_003534554.1| - 1e-57 194.2 0.0 1.3e-57 193.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|292654657|ref|YP_003534554.1| - 9.5e-33 112.6 0.0 1.7e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|292654657|ref|YP_003534554.1| - 0.00077 19.6 0.1 0.0027 17.8 0.0 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dhC PF02774.18 gi|292654657|ref|YP_003534554.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain PriA_3primeBD PF17764.1 gi|292654657|ref|YP_003534554.1| - 0.058 13.3 0.0 40 4.2 0.0 3.1 3 0 0 3 3 3 0 3′ DNA-binding domain (3′BD) NAD_binding_3 PF03447.16 gi|292654657|ref|YP_003534554.1| - 0.091 13.4 0.0 0.66 10.6 0.0 2.1 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|292654657|ref|YP_003534554.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ArsA_HSP20 PF17886.1 gi|292654658|ref|YP_003534555.1| - 3.7e-17 61.6 0.0 1.8e-16 59.5 0.0 1.8 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|292654658|ref|YP_003534555.1| - 6.4e-09 35.9 0.0 2.3e-07 30.9 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|292654658|ref|YP_003534555.1| - 3.2e-05 24.1 1.6 3.6e-05 23.9 1.6 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|292654658|ref|YP_003534555.1| - 0.023 15.1 0.0 0.029 14.8 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain RimK PF08443.11 gi|292654659|ref|YP_003534556.1| - 1.5e-21 76.8 0.0 2.1e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|292654659|ref|YP_003534556.1| - 6.9e-09 35.3 0.0 9.8e-09 34.8 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|292654659|ref|YP_003534556.1| - 6.5e-08 32.2 0.0 0.0034 16.7 0.0 2.6 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|292654659|ref|YP_003534556.1| - 2e-06 27.9 0.0 6.3e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|292654659|ref|YP_003534556.1| - 6.8e-05 22.5 0.0 0.00017 21.2 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|292654659|ref|YP_003534556.1| - 0.0008 19.0 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Ins134_P3_kin PF05770.11 gi|292654659|ref|YP_003534556.1| - 0.036 13.6 0.0 0.34 10.4 0.0 2.0 2 0 0 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Ribosomal_L16 PF00252.18 gi|292654660|ref|YP_003534557.1| - 1.5e-31 109.1 0.1 1.8e-31 108.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e GATase PF00117.28 gi|292654661|ref|YP_003534558.1| - 7.7e-13 48.6 0.0 9.4e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292654661|ref|YP_003534558.1| - 7e-08 32.5 0.3 1.6e-06 28.1 0.3 2.5 1 1 0 1 1 1 1 Peptidase C26 NucS PF01939.16 gi|292654662|ref|YP_003534559.1| - 2.3e-65 220.2 0.0 2.7e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|292654662|ref|YP_003534559.1| - 0.056 13.3 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain Pyridox_ox_2 PF12900.7 gi|292654663|ref|YP_003534560.1| - 5.4e-17 62.1 0.0 6.1e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|292654663|ref|YP_003534560.1| - 0.00013 22.1 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HTH_20 PF12840.7 gi|292654664|ref|YP_003534561.1| - 8.8e-09 35.3 1.2 1.6e-08 34.5 1.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292654664|ref|YP_003534561.1| - 0.0049 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.19 gi|292654664|ref|YP_003534561.1| - 0.017 15.2 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family MarR_2 PF12802.7 gi|292654664|ref|YP_003534561.1| - 0.044 13.7 0.3 0.084 12.8 0.3 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|292654664|ref|YP_003534561.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|292654664|ref|YP_003534561.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|292654664|ref|YP_003534561.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.10 gi|292654665|ref|YP_003534562.1| - 1.5e-07 31.4 0.3 1.5e-07 31.4 0.3 1.4 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|292654665|ref|YP_003534562.1| - 0.00097 18.5 7.1 0.035 13.5 0.4 2.5 3 0 0 3 3 3 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292654665|ref|YP_003534562.1| - 0.0014 18.1 3.2 0.28 10.7 0.4 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf_UBZ PF18439.1 gi|292654665|ref|YP_003534562.1| - 0.0017 17.9 0.3 0.72 9.5 0.0 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|292654665|ref|YP_003534562.1| - 0.0025 17.8 1.0 0.004 17.1 1.0 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-C2H2_4 PF13894.6 gi|292654665|ref|YP_003534562.1| - 0.0094 16.7 0.4 0.98 10.4 0.0 2.3 2 0 0 2 2 2 1 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|292654665|ref|YP_003534562.1| - 0.015 15.0 3.6 1.8 8.4 0.3 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf_Rg PF17915.1 gi|292654665|ref|YP_003534562.1| - 0.024 14.1 0.2 0.024 14.1 0.2 1.7 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-C3HC4_3 PF13920.6 gi|292654665|ref|YP_003534562.1| - 0.027 14.3 0.2 0.061 13.2 0.2 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PknG_rubred PF16919.5 gi|292654665|ref|YP_003534562.1| - 0.034 14.3 0.6 0.034 14.3 0.6 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain Nudix_N_2 PF14803.6 gi|292654665|ref|YP_003534562.1| - 0.036 14.0 2.2 3.2 7.7 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.19 gi|292654665|ref|YP_003534562.1| - 0.056 13.5 0.2 0.066 13.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|292654665|ref|YP_003534562.1| - 0.061 13.0 3.0 2.1 8.1 0.3 2.4 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-C2H2 PF00096.26 gi|292654665|ref|YP_003534562.1| - 0.097 13.2 0.7 1.9 9.1 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|292654665|ref|YP_003534562.1| - 0.12 12.7 1.3 5.3 7.4 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.6 gi|292654665|ref|YP_003534562.1| - 0.21 11.6 0.7 2.7 8.1 0.1 1.9 1 1 1 2 2 2 0 CpXC protein DUF2072 PF09845.9 gi|292654665|ref|YP_003534562.1| - 0.37 11.1 1.3 0.51 10.6 1.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zinc_ribbon_9 PF14369.6 gi|292654665|ref|YP_003534562.1| - 0.37 11.1 0.2 0.37 11.1 0.2 2.5 2 1 1 3 3 3 0 zinc-ribbon zf-Mss51 PF13824.6 gi|292654665|ref|YP_003534562.1| - 0.42 10.7 4.3 6.1 7.0 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|292654666|ref|YP_003534563.1| - 0.00049 20.2 0.2 0.0006 19.9 0.2 1.1 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|292654666|ref|YP_003534563.1| - 0.015 14.8 2.2 0.02 14.4 0.2 1.9 1 1 2 3 3 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|292654666|ref|YP_003534563.1| - 0.098 12.3 0.1 0.098 12.3 0.1 1.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Pyridox_ox_2 PF12900.7 gi|292654667|ref|YP_003534564.1| - 3.8e-14 52.9 0.0 4.3e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|292654667|ref|YP_003534564.1| - 1.9e-06 27.9 0.0 2.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|292654667|ref|YP_003534564.1| - 0.1 12.2 0.0 0.15 11.6 0.0 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like HTH_10 PF04967.12 gi|292654668|ref|YP_003534565.1| - 9.5e-20 70.1 0.1 1.5e-19 69.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|292654668|ref|YP_003534565.1| - 0.003 17.1 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|292654668|ref|YP_003534565.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654668|ref|YP_003534565.1| - 0.014 15.2 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BAT PF15915.5 gi|292654668|ref|YP_003534565.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 1 0 1 1 1 0 GAF and HTH_10 associated domain GerE PF00196.19 gi|292654668|ref|YP_003534565.1| - 0.022 14.3 0.2 0.13 11.8 0.2 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|292654669|ref|YP_003534566.1| - 3e-08 33.6 0.4 4.9e-08 32.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292654669|ref|YP_003534566.1| - 0.0001 22.1 0.1 0.00017 21.3 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|292654669|ref|YP_003534566.1| - 0.0061 16.1 0.0 0.074 12.6 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292654669|ref|YP_003534566.1| - 0.01 15.7 0.0 0.025 14.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|292654669|ref|YP_003534566.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain MarR_2 PF12802.7 gi|292654669|ref|YP_003534566.1| - 0.013 15.3 0.1 0.03 14.2 0.1 1.6 1 1 0 1 1 1 0 MarR family DUF742 PF05331.11 gi|292654669|ref|YP_003534566.1| - 0.019 14.8 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_5 PF01022.20 gi|292654669|ref|YP_003534566.1| - 0.042 13.7 0.0 0.086 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|292654669|ref|YP_003534566.1| - 0.19 11.7 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family CBM_2 PF00553.19 gi|292654670|ref|YP_003534567.1| - 0.075 13.4 0.6 0.62 10.4 0.1 2.2 2 0 0 2 2 2 0 Cellulose binding domain DUF2270 PF10028.9 gi|292654671|ref|YP_003534568.1| - 5.5e-71 237.9 0.5 6.4e-71 237.7 0.5 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) TauE PF01925.19 gi|292654671|ref|YP_003534568.1| - 0.004 16.8 3.5 0.42 10.2 1.4 2.1 2 0 0 2 2 2 2 Sulfite exporter TauE/SafE DUF3054 PF11255.8 gi|292654671|ref|YP_003534568.1| - 0.052 14.1 2.0 0.84 10.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3054) DUF368 PF04018.13 gi|292654671|ref|YP_003534568.1| - 0.19 11.3 2.2 3.6 7.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF368) CSD PF00313.22 gi|292654672|ref|YP_003534569.1| - 1e-20 73.3 0.1 1.1e-20 73.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|292654672|ref|YP_003534569.1| - 0.0094 15.9 0.2 0.012 15.6 0.2 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.11 gi|292654672|ref|YP_003534569.1| - 0.036 13.8 2.7 0.049 13.3 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.22 gi|292654673|ref|YP_003534570.1| - 8.9e-20 70.3 0.1 9.9e-20 70.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|292654673|ref|YP_003534570.1| - 0.037 13.7 2.7 0.049 13.3 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|292654673|ref|YP_003534570.1| - 0.049 13.6 0.2 0.06 13.3 0.2 1.3 1 1 0 1 1 1 0 S1-like VanZ PF04892.12 gi|292654675|ref|YP_003534572.1| - 9.2e-08 32.8 0.1 9.2e-08 32.8 0.1 1.3 2 0 0 2 2 2 1 VanZ like family DUF192 PF02643.15 gi|292654677|ref|YP_003534574.1| - 7.2e-28 96.6 0.0 9.4e-28 96.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1616 PF07760.11 gi|292654677|ref|YP_003534574.1| - 0.081 12.3 0.3 0.11 11.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF1905 PF08922.11 gi|292654677|ref|YP_003534574.1| - 0.085 12.9 0.0 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) ABC_membrane PF00664.23 gi|292654679|ref|YP_003534576.1| - 1.1e-44 153.1 1.9 1.5e-44 152.7 1.9 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|292654679|ref|YP_003534576.1| - 1.6e-37 129.1 0.0 2.6e-37 128.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane_3 PF13748.6 gi|292654679|ref|YP_003534576.1| - 0.0014 17.9 1.6 0.68 9.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter transmembrane region SMC_N PF02463.19 gi|292654679|ref|YP_003534576.1| - 0.0017 17.8 0.5 0.022 14.2 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292654679|ref|YP_003534576.1| - 0.0025 18.2 0.0 0.0058 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292654679|ref|YP_003534576.1| - 0.0026 18.0 0.0 0.0096 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292654679|ref|YP_003534576.1| - 0.0072 16.0 0.0 0.028 14.1 0.0 2.0 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|292654679|ref|YP_003534576.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_ATPase PF09818.9 gi|292654679|ref|YP_003534576.1| - 0.072 11.9 1.0 0.1 11.4 0.2 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|292654679|ref|YP_003534576.1| - 0.088 12.5 0.1 0.24 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|292654679|ref|YP_003534576.1| - 0.096 13.1 0.0 0.62 10.5 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|292654679|ref|YP_003534576.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 gi|292654679|ref|YP_003534576.1| - 0.14 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|292654679|ref|YP_003534576.1| - 0.15 11.8 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 gi|292654679|ref|YP_003534576.1| - 0.15 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2107 PF09880.9 gi|292654679|ref|YP_003534576.1| - 0.17 12.1 1.0 0.42 10.8 1.0 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) G-alpha PF00503.20 gi|292654679|ref|YP_003534576.1| - 0.23 10.6 0.0 0.36 10.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Creatininase PF02633.14 gi|292654680|ref|YP_003534577.1| - 4.7e-68 229.2 0.9 5.3e-68 229.1 0.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase T6SS_VipA PF05591.12 gi|292654681|ref|YP_003534578.1| - 0.046 13.5 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 FliS PF02561.14 gi|292654681|ref|YP_003534578.1| - 0.1 12.9 0.6 0.81 10.0 0.2 2.5 1 1 2 3 3 3 0 Flagellar protein FliS DUF4611 PF15387.6 gi|292654681|ref|YP_003534578.1| - 0.24 11.6 6.4 0.71 10.1 6.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) FUSC PF04632.12 gi|292654681|ref|YP_003534578.1| - 4 5.8 4.7 3.3 6.1 3.2 1.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family NUDIX PF00293.28 gi|292654682|ref|YP_003534579.1| - 8.2e-16 58.2 0.4 1e-15 57.9 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain HORMA PF02301.18 gi|292654682|ref|YP_003534579.1| - 0.22 11.1 0.0 0.28 10.7 0.0 1.1 1 0 0 1 1 1 0 HORMA domain DHNA PF04038.12 gi|292654683|ref|YP_003534580.1| - 9.2e-40 135.5 0.0 1e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|292654684|ref|YP_003534581.1| - 7.2e-23 81.3 0.0 9.1e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292654684|ref|YP_003534581.1| - 9.7e-15 54.3 0.0 1.3e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|292654684|ref|YP_003534581.1| - 1.5e-13 50.6 0.0 1.8e-10 40.4 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|292654684|ref|YP_003534581.1| - 1.9e-11 43.6 0.2 3.3e-11 42.9 0.0 1.4 2 0 0 2 2 2 1 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|292654684|ref|YP_003534581.1| - 3.6e-11 43.1 0.0 6.5e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|292654684|ref|YP_003534581.1| - 3.9e-10 39.9 0.0 5.5e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|292654684|ref|YP_003534581.1| - 4.9e-05 23.0 0.0 6.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|292654684|ref|YP_003534581.1| - 0.0016 17.6 0.0 0.0049 16.0 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain DUF3180 PF11377.8 gi|292654685|ref|YP_003534582.1| - 0.037 14.2 8.6 0.37 10.9 1.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) HTH_10 PF04967.12 gi|292654686|ref|YP_003534583.1| - 2e-18 65.9 0.0 3.5e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|292654686|ref|YP_003534583.1| - 4e-05 23.0 0.1 8.3e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|292654686|ref|YP_003534583.1| - 0.00058 19.6 0.1 0.0016 18.2 0.1 1.7 1 1 0 1 1 1 1 LexA DNA binding domain GerE PF00196.19 gi|292654686|ref|YP_003534583.1| - 0.00068 19.1 0.1 0.011 15.3 0.1 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|292654686|ref|YP_003534583.1| - 0.00093 19.0 0.0 0.0019 18.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|292654686|ref|YP_003534583.1| - 0.0012 18.5 0.1 0.028 14.1 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|292654686|ref|YP_003534583.1| - 0.0031 17.0 0.0 0.0066 16.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292654686|ref|YP_003534583.1| - 0.017 15.0 0.1 0.035 14.0 0.1 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|292654686|ref|YP_003534583.1| - 0.02 15.1 0.0 0.04 14.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 gi|292654686|ref|YP_003534583.1| - 0.027 14.1 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.6 gi|292654686|ref|YP_003534583.1| - 0.037 13.8 0.0 0.11 12.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|292654686|ref|YP_003534583.1| - 0.053 13.5 0.2 2.2 8.3 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TetR_N PF00440.23 gi|292654686|ref|YP_003534583.1| - 0.29 10.9 1.3 0.55 10.1 0.2 2.1 2 1 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF309 PF03745.14 gi|292654687|ref|YP_003534584.1| - 1.5e-16 59.8 0.4 3.1e-16 58.8 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF309) FYVE_2 PF02318.16 gi|292654688|ref|YP_003534585.1| - 0.076 13.2 0.1 0.076 13.2 0.1 1.2 1 0 0 1 1 1 0 FYVE-type zinc finger Lipase_GDSL_2 PF13472.6 gi|292654689|ref|YP_003534586.1| - 7.3e-20 72.1 0.7 8.7e-20 71.9 0.7 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|292654689|ref|YP_003534586.1| - 8.1e-08 32.5 0.0 1.1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase tRNA_anti-codon PF01336.25 gi|292654691|ref|YP_003534588.1| - 1.1e-30 105.4 10.5 7.9e-13 48.2 0.5 4.0 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|292654691|ref|YP_003534588.1| - 3.1e-14 53.2 0.0 6e-05 22.9 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|292654691|ref|YP_003534588.1| - 8.5e-09 35.2 0.7 0.0012 18.7 0.1 3.3 3 0 0 3 3 3 3 Replication protein A OB domain SSB PF00436.25 gi|292654691|ref|YP_003534588.1| - 0.00021 21.3 0.2 0.24 11.5 0.0 3.2 4 0 0 4 4 4 2 Single-strand binding protein family DUF4539 PF15072.6 gi|292654691|ref|YP_003534588.1| - 0.0017 18.4 0.3 0.097 12.7 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4539) POT1PC PF16686.5 gi|292654691|ref|YP_003534588.1| - 0.0043 16.9 0.0 2.5 7.9 0.0 2.4 2 0 0 2 2 2 2 ssDNA-binding domain of telomere protection protein Rep_fac-A_C PF08646.10 gi|292654691|ref|YP_003534588.1| - 0.042 13.6 0.0 7.3 6.3 0.0 2.9 3 0 0 3 3 3 0 Replication factor-A C terminal domain tRNA_anti_2 PF13742.6 gi|292654691|ref|YP_003534588.1| - 0.1 12.8 0.0 8.6 6.6 0.0 2.9 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain CBFD_NFYB_HMF PF00808.23 gi|292654692|ref|YP_003534589.1| - 3.7e-24 84.8 0.6 1.7e-13 50.6 0.2 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|292654692|ref|YP_003534589.1| - 1.3e-12 48.2 1.6 1e-08 35.6 0.4 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|292654692|ref|YP_003534589.1| - 0.00014 22.0 0.5 0.0018 18.4 0.1 2.0 2 0 0 2 2 2 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|292654692|ref|YP_003534589.1| - 0.0011 18.9 0.3 0.031 14.3 0.0 2.2 2 0 0 2 2 2 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|292654692|ref|YP_003534589.1| - 0.008 16.6 0.4 0.02 15.4 0.4 1.6 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|292654692|ref|YP_003534589.1| - 0.017 15.2 0.9 0.096 12.8 0.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1931) PGDH_C PF16896.5 gi|292654692|ref|YP_003534589.1| - 0.045 13.7 0.1 2.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Phosphogluconate dehydrogenase (decarboxylating) C-term CENP-S PF15630.6 gi|292654692|ref|YP_003534589.1| - 0.046 14.1 1.3 0.066 13.6 0.4 1.7 2 0 0 2 2 2 0 CENP-S protein TAF PF02969.17 gi|292654692|ref|YP_003534589.1| - 0.072 13.3 3.1 0.6 10.3 0.5 2.4 2 1 0 2 2 2 0 TATA box binding protein associated factor (TAF) Hist_deacetyl PF00850.19 gi|292654693|ref|YP_003534590.1| - 6e-81 272.3 0.0 8.8e-81 271.7 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Lipase_GDSL_2 PF13472.6 gi|292654693|ref|YP_003534590.1| - 0.0018 18.7 0.1 0.13 12.7 0.0 2.6 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family tRNA_NucTransf2 PF09249.11 gi|292654694|ref|YP_003534591.1| - 4.6e-42 142.8 0.0 7.7e-42 142.1 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|292654694|ref|YP_003534591.1| - 1.3e-13 51.1 0.0 2.2e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|292654694|ref|YP_003534591.1| - 0.036 14.2 0.0 0.21 11.8 0.0 2.0 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF629 PF04780.12 gi|292654696|ref|YP_003534593.1| - 0.021 13.4 0.3 0.025 13.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF629) SBP_bac_8 PF13416.6 gi|292654699|ref|YP_003534596.1| - 1.3e-19 71.1 3.2 1.7e-19 70.7 3.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|292654699|ref|YP_003534596.1| - 9.3e-13 48.8 5.6 1.3e-12 48.3 5.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|292654699|ref|YP_003534596.1| - 0.065 13.0 0.2 0.25 11.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|292654700|ref|YP_003534597.1| - 2e-19 70.0 17.2 2e-19 70.0 17.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|292654701|ref|YP_003534598.1| - 3.7e-10 39.8 12.7 3.7e-10 39.8 12.7 2.6 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|292654702|ref|YP_003534599.1| - 1.2e-30 106.8 0.0 1.9e-30 106.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|292654702|ref|YP_003534599.1| - 6.4e-08 33.3 0.0 2.1e-07 31.7 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|292654702|ref|YP_003534599.1| - 2.8e-07 30.6 0.0 0.019 14.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|292654702|ref|YP_003534599.1| - 4.3e-07 30.0 0.1 1.5e-06 28.2 0.1 2.1 2 0 0 2 2 1 1 TOBE domain AAA_22 PF13401.6 gi|292654702|ref|YP_003534599.1| - 0.00057 20.2 0.3 0.0017 18.6 0.3 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292654702|ref|YP_003534599.1| - 0.00095 18.7 0.1 0.0062 16.0 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|292654702|ref|YP_003534599.1| - 0.0016 18.4 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|292654702|ref|YP_003534599.1| - 0.0019 18.6 0.0 0.0057 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|292654702|ref|YP_003534599.1| - 0.0022 17.9 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 gi|292654702|ref|YP_003534599.1| - 0.013 15.8 0.0 0.028 14.7 0.0 1.7 1 0 0 1 1 1 0 TOBE domain AAA PF00004.29 gi|292654702|ref|YP_003534599.1| - 0.013 15.9 0.0 0.054 13.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|292654702|ref|YP_003534599.1| - 0.02 14.5 0.1 1 8.9 0.0 2.5 3 0 0 3 3 3 0 AAA domain BAT PF15915.5 gi|292654702|ref|YP_003534599.1| - 0.028 14.3 3.5 0.12 12.3 1.1 2.4 2 0 0 2 2 2 0 GAF and HTH_10 associated domain AAA_29 PF13555.6 gi|292654702|ref|YP_003534599.1| - 0.046 13.5 0.0 0.096 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|292654702|ref|YP_003534599.1| - 0.061 13.0 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|292654702|ref|YP_003534599.1| - 0.082 13.1 0.1 0.14 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|292654702|ref|YP_003534599.1| - 0.094 12.4 0.0 0.18 11.5 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Cytidylate_kin PF02224.18 gi|292654702|ref|YP_003534599.1| - 0.095 12.4 0.0 0.2 11.4 0.0 1.5 1 1 0 1 1 1 0 Cytidylate kinase CysA_C_terminal PF17850.1 gi|292654702|ref|YP_003534599.1| - 0.13 12.8 0.2 0.47 11.1 0.2 2.0 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_18 PF13238.6 gi|292654702|ref|YP_003534599.1| - 0.13 12.8 0.0 0.55 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|292654702|ref|YP_003534599.1| - 0.14 12.6 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|292654702|ref|YP_003534599.1| - 0.19 11.8 0.1 0.65 10.1 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|292654702|ref|YP_003534599.1| - 0.22 11.4 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|292654702|ref|YP_003534599.1| - 0.29 11.5 0.6 0.8 10.1 0.0 2.1 3 0 0 3 3 1 0 RNA helicase Ferritin PF00210.24 gi|292654704|ref|YP_003534601.1| - 3.8e-33 114.4 7.8 4.5e-33 114.2 7.8 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2959 PF11172.8 gi|292654704|ref|YP_003534601.1| - 0.035 14.2 0.1 0.048 13.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) DUF892 PF05974.12 gi|292654704|ref|YP_003534601.1| - 0.044 13.8 6.9 0.098 12.7 6.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF892) SIMPL PF04402.14 gi|292654704|ref|YP_003534601.1| - 0.049 14.1 0.1 0.062 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DUF1512 PF07431.12 gi|292654704|ref|YP_003534601.1| - 0.061 12.3 0.1 0.077 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1512) Serine_rich PF08824.10 gi|292654704|ref|YP_003534601.1| - 0.085 12.9 0.1 5.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Serine rich protein interaction domain DUF1451 PF07295.11 gi|292654704|ref|YP_003534601.1| - 0.59 10.2 4.8 1.6 8.8 1.2 2.2 1 1 1 2 2 2 0 Zinc-ribbon containing domain Fe_dep_repress PF01325.19 gi|292654706|ref|YP_003534603.1| - 2.8e-09 37.0 0.0 4.8e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|292654706|ref|YP_003534603.1| - 2.7e-05 24.0 0.0 5.1e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.15 gi|292654706|ref|YP_003534603.1| - 2.8e-05 24.1 0.0 4.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain LexA_DNA_bind PF01726.16 gi|292654706|ref|YP_003534603.1| - 0.021 14.6 0.0 0.051 13.4 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain HTH_24 PF13412.6 gi|292654706|ref|YP_003534603.1| - 0.026 14.1 0.0 0.057 13.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|292654706|ref|YP_003534603.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DHR10 PF18595.1 gi|292654707|ref|YP_003534604.1| - 0.038 14.0 4.2 0.32 11.1 0.5 2.7 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain zf-HYPF PF07503.12 gi|292654707|ref|YP_003534604.1| - 0.15 11.9 0.9 4.6 7.1 0.2 2.8 2 0 0 2 2 2 0 HypF finger GvpL_GvpF PF06386.11 gi|292654707|ref|YP_003534604.1| - 1.4 8.8 11.2 0.89 9.4 3.7 2.2 1 1 0 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF Aconitase PF00330.20 gi|292654709|ref|YP_003534606.1| - 6.1e-169 562.9 0.0 8.2e-169 562.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|292654709|ref|YP_003534606.1| - 1e-39 135.9 0.0 1.9e-39 135.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain BAT PF15915.5 gi|292654709|ref|YP_003534606.1| - 0.22 11.4 7.7 0.088 12.7 0.4 3.2 4 0 0 4 4 4 0 GAF and HTH_10 associated domain DUF836 PF05768.14 gi|292654711|ref|YP_003534608.1| - 2e-14 53.8 0.0 2.2e-14 53.6 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|292654711|ref|YP_003534608.1| - 2.9e-07 30.6 0.2 4.4e-07 30.0 0.2 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|292654711|ref|YP_003534608.1| - 7.5e-06 25.9 0.1 9.2e-06 25.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|292654711|ref|YP_003534608.1| - 0.038 13.8 0.0 1.2 8.9 0.0 2.0 1 1 1 2 2 2 0 F plasmid transfer operon protein Thioredoxin PF00085.20 gi|292654711|ref|YP_003534608.1| - 0.042 13.8 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|292654711|ref|YP_003534608.1| - 0.08 13.4 0.0 0.095 13.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Sugar_tr PF00083.24 gi|292654712|ref|YP_003534609.1| - 1.7e-126 422.8 21.2 2e-126 422.5 21.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|292654712|ref|YP_003534609.1| - 5.1e-39 134.2 62.2 2e-30 105.9 26.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|292654712|ref|YP_003534609.1| - 3.1e-09 35.8 0.8 3.1e-09 35.8 0.8 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|292654712|ref|YP_003534609.1| - 0.0041 15.5 4.7 0.46 8.7 0.1 3.0 1 1 1 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.6 gi|292654712|ref|YP_003534609.1| - 0.012 14.2 40.3 0.02 13.5 6.0 4.0 3 1 1 4 4 4 0 MFS/sugar transport protein Rick_17kDa_Anti PF05433.15 gi|292654712|ref|YP_003534609.1| - 0.017 15.0 5.4 0.017 15.0 5.4 2.8 2 0 0 2 2 2 0 Glycine zipper 2TM domain VirB8 PF04335.13 gi|292654712|ref|YP_003534609.1| - 0.34 10.7 0.0 0.34 10.7 0.0 2.7 3 0 0 3 3 3 0 VirB8 protein Gly-zipper_Omp PF13488.6 gi|292654712|ref|YP_003534609.1| - 1.1 9.4 10.4 0.76 9.8 6.5 2.5 1 1 1 2 2 2 0 Glycine zipper DNA_RNApol_7kD PF03604.13 gi|292654714|ref|YP_003534611.1| - 0.0012 18.5 1.1 0.38 10.5 0.2 2.2 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|292654714|ref|YP_003534611.1| - 0.0018 18.2 2.5 0.0023 17.9 2.5 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292654714|ref|YP_003534611.1| - 0.0033 17.5 2.4 1.6 9.0 0.1 2.1 2 0 0 2 2 2 2 Zinc ribbon domain DZR PF12773.7 gi|292654714|ref|YP_003534611.1| - 0.0034 17.4 0.6 0.0058 16.6 0.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|292654714|ref|YP_003534611.1| - 0.0041 16.5 1.4 0.59 9.6 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain GATA PF00320.27 gi|292654714|ref|YP_003534611.1| - 0.0061 16.1 0.8 0.13 11.9 0.0 2.2 2 0 0 2 2 2 1 GATA zinc finger Rubredoxin_2 PF18073.1 gi|292654714|ref|YP_003534611.1| - 0.0072 16.0 6.2 0.13 12.0 1.3 2.2 2 0 0 2 2 2 2 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|292654714|ref|YP_003534611.1| - 0.012 15.2 0.9 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 gi|292654714|ref|YP_003534611.1| - 0.018 14.9 0.2 0.029 14.3 0.2 1.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|292654714|ref|YP_003534611.1| - 0.019 14.5 0.6 3.3 7.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|292654714|ref|YP_003534611.1| - 0.022 14.6 0.3 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-HYPF PF07503.12 gi|292654714|ref|YP_003534611.1| - 0.031 14.0 2.0 0.94 9.3 0.2 2.3 2 0 0 2 2 2 0 HypF finger zf-IS66 PF13005.7 gi|292654714|ref|YP_003534611.1| - 0.039 14.4 2.5 2.7 8.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|292654714|ref|YP_003534611.1| - 0.07 13.1 0.8 0.13 12.2 0.8 1.4 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|292654714|ref|YP_003534611.1| - 0.077 13.0 0.2 0.083 12.9 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|292654714|ref|YP_003534611.1| - 0.17 12.4 3.4 6.2 7.5 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|292654714|ref|YP_003534611.1| - 0.2 11.6 2.9 0.77 9.7 2.9 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.6 gi|292654714|ref|YP_003534611.1| - 0.25 11.9 5.2 0.42 11.2 5.2 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2H2_6 PF13912.6 gi|292654714|ref|YP_003534611.1| - 0.65 10.1 3.5 1.6 8.8 0.3 2.4 3 0 0 3 3 3 0 C2H2-type zinc finger DUF3117 PF11314.8 gi|292654715|ref|YP_003534612.1| - 0.025 14.4 0.0 1.3 8.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) Na_H_antiporter PF03553.14 gi|292654716|ref|YP_003534613.1| - 1.7e-55 188.4 43.6 3.1e-49 167.9 21.9 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family PfkB PF00294.24 gi|292654717|ref|YP_003534614.1| - 5.4e-59 200.0 0.8 6.5e-59 199.7 0.8 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Adeno_E3 PF06040.11 gi|292654718|ref|YP_003534615.1| - 0.043 14.0 0.1 0.069 13.3 0.1 1.3 1 0 0 1 1 1 0 Adenovirus E3 protein MutL_C PF08676.11 gi|292654719|ref|YP_003534616.1| - 8e-36 123.0 0.0 1.2e-35 122.5 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|292654719|ref|YP_003534616.1| - 1.4e-35 121.5 0.0 2.1e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|292654719|ref|YP_003534616.1| - 3.9e-11 42.9 0.0 7.3e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|292654719|ref|YP_003534616.1| - 2.5e-05 24.7 0.1 5.1e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|292654720|ref|YP_003534617.1| - 7.3e-86 287.0 0.0 1.4e-85 286.0 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|292654720|ref|YP_003534617.1| - 1.2e-36 126.8 3.1 2.2e-36 125.9 3.1 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|292654720|ref|YP_003534617.1| - 1.3e-27 96.3 0.0 2.5e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|292654720|ref|YP_003534617.1| - 5.1e-25 87.6 0.9 1e-24 86.7 0.9 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|292654720|ref|YP_003534617.1| - 1.3e-21 77.4 0.0 3.9e-21 75.8 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_27 PF13514.6 gi|292654720|ref|YP_003534617.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain APG6_N PF17675.1 gi|292654720|ref|YP_003534617.1| - 0.092 13.3 3.0 0.26 11.8 3.0 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region AAA_29 PF13555.6 gi|292654720|ref|YP_003534617.1| - 0.12 12.1 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|292654720|ref|YP_003534617.1| - 0.12 12.4 0.0 0.51 10.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain FbpA PF05833.11 gi|292654720|ref|YP_003534617.1| - 0.13 11.0 0.3 0.21 10.3 0.3 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) AAA_23 PF13476.6 gi|292654720|ref|YP_003534617.1| - 0.18 12.3 0.2 3.5 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Peripla_BP_6 PF13458.6 gi|292654721|ref|YP_003534618.1| - 6.9e-33 114.7 12.7 9.6e-33 114.3 12.7 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|292654721|ref|YP_003534618.1| - 5.1e-18 65.3 0.0 4e-14 52.5 0.0 2.0 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|292654721|ref|YP_003534618.1| - 2.6e-05 23.4 0.3 0.0001 21.4 0.1 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|292654721|ref|YP_003534618.1| - 0.00081 19.1 1.6 0.0032 17.3 1.6 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence KRE1 PF17056.5 gi|292654721|ref|YP_003534618.1| - 0.02 14.6 0.2 0.046 13.4 0.2 1.5 1 0 0 1 1 1 0 Killer toxin-resistance protein 1 MCPsignal PF00015.21 gi|292654722|ref|YP_003534619.1| - 8.8e-45 152.6 25.2 8.8e-45 152.6 25.2 4.6 1 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|292654722|ref|YP_003534619.1| - 4.8e-12 46.2 0.1 4.8e-12 46.2 0.1 4.1 3 1 1 4 4 4 1 Cache domain HAMP PF00672.25 gi|292654722|ref|YP_003534619.1| - 1.3e-08 35.1 15.4 6.7e-05 23.2 0.1 4.7 4 1 1 5 5 5 2 HAMP domain DUF948 PF06103.11 gi|292654722|ref|YP_003534619.1| - 0.0085 16.3 38.1 0.066 13.5 2.9 6.9 2 1 5 7 7 7 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|292654722|ref|YP_003534619.1| - 0.017 15.2 37.8 0.033 14.2 4.7 4.7 3 2 2 5 5 5 0 Laminin Domain II BLOC1_2 PF10046.9 gi|292654722|ref|YP_003534619.1| - 0.3 11.4 26.2 1.5 9.2 3.8 5.8 4 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 KxDL PF10241.9 gi|292654722|ref|YP_003534619.1| - 0.41 10.9 12.8 13 6.1 0.0 4.8 2 2 2 4 4 4 0 Uncharacterized conserved protein Vps54_N PF10475.9 gi|292654722|ref|YP_003534619.1| - 0.65 9.2 5.6 0.33 10.2 0.4 2.3 2 0 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Syntaxin_2 PF14523.6 gi|292654722|ref|YP_003534619.1| - 0.78 10.1 10.6 3.2 8.2 1.6 3.9 2 1 3 5 5 5 0 Syntaxin-like protein NPV_P10 PF05531.12 gi|292654722|ref|YP_003534619.1| - 1.6 9.2 17.1 0.096 13.2 2.1 4.9 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|292654722|ref|YP_003534619.1| - 1.7 8.7 15.7 0.16 12.0 3.3 3.1 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus YscO-like PF16789.5 gi|292654722|ref|YP_003534619.1| - 2.5 8.1 20.7 0.32 11.0 3.7 3.3 2 2 2 4 4 4 0 YscO-like protein Prominin PF05478.11 gi|292654722|ref|YP_003534619.1| - 3.2 5.6 16.7 0.81 7.6 5.0 2.5 2 1 1 3 3 3 0 Prominin DUF1664 PF07889.12 gi|292654722|ref|YP_003534619.1| - 7.6 6.6 29.8 3.6 7.6 5.0 5.2 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) MCPsignal PF00015.21 gi|292654723|ref|YP_003534620.1| - 1.7e-38 132.1 45.4 6.5e-37 127.0 27.7 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|292654723|ref|YP_003534620.1| - 4.7e-11 42.7 0.0 2e-10 40.7 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|292654723|ref|YP_003534620.1| - 3.7e-08 33.6 8.2 4.8e-08 33.2 0.7 4.0 2 2 2 4 4 4 1 PAS fold PAS_9 PF13426.7 gi|292654723|ref|YP_003534620.1| - 1.4e-06 28.5 0.0 4.6e-06 26.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|292654723|ref|YP_003534620.1| - 0.0008 19.4 0.0 0.0022 18.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 gi|292654723|ref|YP_003534620.1| - 0.0039 17.8 0.0 0.014 16.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain MLTR_LBD PF17765.1 gi|292654723|ref|YP_003534620.1| - 0.005 17.0 5.8 0.0084 16.2 0.1 3.3 1 1 2 3 3 3 1 MmyB-like transcription regulator ligand binding domain Spc7 PF08317.11 gi|292654723|ref|YP_003534620.1| - 0.018 13.9 22.7 0.011 14.6 4.0 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein Fzo_mitofusin PF04799.13 gi|292654723|ref|YP_003534620.1| - 0.027 14.0 0.1 0.027 14.0 0.1 3.5 3 1 1 4 4 4 0 fzo-like conserved region PAS_7 PF12860.7 gi|292654723|ref|YP_003534620.1| - 0.037 14.2 6.5 0.062 13.5 0.0 3.9 2 2 1 4 4 4 0 PAS fold EzrA PF06160.12 gi|292654723|ref|YP_003534620.1| - 0.046 11.9 16.4 0.1 10.8 16.4 1.4 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3450 PF11932.8 gi|292654723|ref|YP_003534620.1| - 0.088 12.1 29.5 0.076 12.3 2.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) HMMR_N PF15905.5 gi|292654723|ref|YP_003534620.1| - 0.31 10.5 13.9 1.5 8.2 1.6 2.3 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF489 PF04356.12 gi|292654723|ref|YP_003534620.1| - 0.44 10.5 9.5 3.5 7.6 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF489) Kre28 PF17097.5 gi|292654723|ref|YP_003534620.1| - 0.47 9.3 16.9 5 6.0 15.9 2.4 1 1 0 1 1 1 0 Spindle pole body component AIP3 PF03915.13 gi|292654723|ref|YP_003534620.1| - 0.73 8.9 23.1 0.5 9.4 9.4 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 CLZ PF16526.5 gi|292654723|ref|YP_003534620.1| - 1.2 9.6 0.0 1.2 9.6 0.0 3.7 4 1 0 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CorA PF01544.18 gi|292654723|ref|YP_003534620.1| - 1.4 8.2 16.7 0.27 10.5 5.2 3.0 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein UPF0242 PF06785.11 gi|292654723|ref|YP_003534620.1| - 1.6 8.8 12.9 5.3 7.1 1.5 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ATG16 PF08614.11 gi|292654723|ref|YP_003534620.1| - 4 7.6 26.8 1.6 8.9 11.9 2.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF948 PF06103.11 gi|292654723|ref|YP_003534620.1| - 4.8 7.5 34.5 1.4 9.2 3.0 5.2 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|292654723|ref|YP_003534620.1| - 5.6 7.0 32.9 0.41 10.7 3.0 4.2 1 1 3 4 4 4 0 Laminin Domain II Peptidase_M3_N PF08439.10 gi|292654723|ref|YP_003534620.1| - 5.7 7.3 6.3 33 4.8 0.5 2.9 3 0 0 3 3 2 0 Oligopeptidase F TMPIT PF07851.13 gi|292654723|ref|YP_003534620.1| - 7.6 5.7 9.6 22 4.2 0.2 2.4 2 0 0 2 2 2 0 TMPIT-like protein ThiF PF00899.21 gi|292654724|ref|YP_003534621.1| - 1.6e-67 227.4 0.0 2.1e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|292654724|ref|YP_003534621.1| - 0.00012 22.3 0.4 0.00033 20.9 0.4 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|292654724|ref|YP_003534621.1| - 0.0092 16.0 0.1 0.02 14.9 0.0 1.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|292654724|ref|YP_003534621.1| - 0.095 13.2 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|292654724|ref|YP_003534621.1| - 0.18 11.0 3.7 0.076 12.3 1.3 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|292654724|ref|YP_003534621.1| - 0.23 11.0 1.8 0.31 10.6 1.2 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rhodanese PF00581.20 gi|292654725|ref|YP_003534622.1| - 9e-12 45.5 0.0 1.8e-11 44.5 0.0 1.5 1 1 0 1 1 1 1 Rhodanese-like domain LRV PF01816.17 gi|292654725|ref|YP_003534622.1| - 0.048 14.1 0.9 0.29 11.6 0.1 2.3 2 0 0 2 2 2 0 Leucine rich repeat variant DUF3280 PF11684.8 gi|292654725|ref|YP_003534622.1| - 0.12 12.8 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) DUF2304 PF10066.9 gi|292654726|ref|YP_003534623.1| - 0.038 14.2 1.2 0.061 13.5 1.2 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) Ribosomal_L15e PF00827.17 gi|292654727|ref|YP_003534624.1| - 2e-81 272.3 7.8 2.3e-81 272.1 7.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 BPD_transp_1 PF00528.22 gi|292654728|ref|YP_003534625.1| - 2.8e-12 46.8 17.4 2.8e-12 46.8 17.4 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|292654729|ref|YP_003534626.1| - 7.2e-15 55.2 14.3 7.2e-15 55.2 14.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|292654729|ref|YP_003534626.1| - 0.018 15.1 0.4 0.042 14.0 0.4 1.6 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_8 PF13416.6 gi|292654730|ref|YP_003534627.1| - 2.8e-29 102.8 8.1 4.2e-29 102.2 8.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|292654730|ref|YP_003534627.1| - 0.0018 18.0 0.6 0.0018 18.0 0.6 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|292654731|ref|YP_003534628.1| - 2.9e-32 112.1 0.0 4.7e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|292654731|ref|YP_003534628.1| - 1.9e-08 34.3 0.5 6.3e-08 32.7 0.5 2.0 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|292654731|ref|YP_003534628.1| - 2.1e-08 34.9 0.0 7.7e-08 33.1 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain TOBE PF03459.17 gi|292654731|ref|YP_003534628.1| - 1e-06 28.9 0.9 8.2e-06 26.0 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|292654731|ref|YP_003534628.1| - 5.4e-06 26.4 0.0 0.0073 16.2 0.0 2.5 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292654731|ref|YP_003534628.1| - 0.00033 20.1 0.3 0.0022 17.4 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|292654731|ref|YP_003534628.1| - 0.0015 18.8 0.2 0.0026 18.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292654731|ref|YP_003534628.1| - 0.0021 18.5 0.1 0.0033 17.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|292654731|ref|YP_003534628.1| - 0.0066 16.4 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|292654731|ref|YP_003534628.1| - 0.018 15.5 0.1 0.061 13.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|292654731|ref|YP_003534628.1| - 0.022 13.9 0.0 0.024 13.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|292654731|ref|YP_003534628.1| - 0.046 13.0 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin CysA_C_terminal PF17850.1 gi|292654731|ref|YP_003534628.1| - 0.048 14.2 0.6 1.5 9.5 0.0 3.0 3 0 0 3 3 3 0 CysA C-terminal regulatory domain AAA_30 PF13604.6 gi|292654731|ref|YP_003534628.1| - 0.06 13.1 0.0 0.35 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|292654731|ref|YP_003534628.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|292654731|ref|YP_003534628.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|292654731|ref|YP_003534628.1| - 0.15 12.6 0.1 0.47 11.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|292654731|ref|YP_003534628.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Alpha-amylase PF00128.24 gi|292654733|ref|YP_003534630.1| - 1e-48 166.7 0.0 1.6e-48 166.0 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain PKD PF00801.20 gi|292654733|ref|YP_003534630.1| - 1.8e-05 24.5 0.0 6.1e-05 22.8 0.0 1.9 1 0 0 1 1 1 1 PKD domain Malt_amylase_C PF16657.5 gi|292654733|ref|YP_003534630.1| - 5.7e-05 23.2 0.0 0.00022 21.3 0.0 2.0 2 0 0 2 2 2 1 Maltogenic Amylase, C-terminal domain Glyco_hydro_42C PF08533.10 gi|292654733|ref|YP_003534630.1| - 0.00024 20.8 0.0 0.00063 19.4 0.0 1.8 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain DUF3459 PF11941.8 gi|292654733|ref|YP_003534630.1| - 0.001 19.3 2.1 0.002 18.4 0.3 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.18 gi|292654733|ref|YP_003534630.1| - 0.0025 18.3 0.0 0.011 16.2 0.0 2.1 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.6 gi|292654733|ref|YP_003534630.1| - 0.1 11.7 0.0 1.3 8.0 0.0 2.0 2 0 0 2 2 2 0 Glycogen debranching enzyme, glucanotransferase domain Regulator_TrmB PF11495.8 gi|292654734|ref|YP_003534631.1| - 1e-63 214.7 0.0 1.3e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|292654734|ref|YP_003534631.1| - 5.5e-14 51.8 0.1 1.1e-13 50.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|292654734|ref|YP_003534631.1| - 0.0003 20.7 0.0 0.00064 19.6 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|292654734|ref|YP_003534631.1| - 0.0052 16.7 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|292654734|ref|YP_003534631.1| - 0.02 14.9 0.1 2.4 8.2 0.0 3.1 2 1 1 3 3 3 0 HTH domain Rrf2 PF02082.20 gi|292654734|ref|YP_003534631.1| - 0.05 14.0 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_6 PF01418.17 gi|292654734|ref|YP_003534631.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_36 PF13730.6 gi|292654734|ref|YP_003534631.1| - 0.094 12.7 0.0 3.5 7.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|292654734|ref|YP_003534631.1| - 0.097 12.7 0.0 1.3 9.1 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn helix RIO1 PF01163.22 gi|292654735|ref|YP_003534632.1| - 1e-45 155.6 0.0 1.4e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|292654735|ref|YP_003534632.1| - 1e-27 96.1 0.0 2.2e-27 95.1 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase_fungal PF17667.1 gi|292654735|ref|YP_003534632.1| - 0.0069 15.2 0.0 0.0074 15.1 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase HATPase_c PF02518.26 gi|292654736|ref|YP_003534633.1| - 1.1e-14 54.9 0.0 3.5e-14 53.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|292654736|ref|YP_003534633.1| - 5.8e-08 32.8 0.1 1.2e-07 31.7 0.1 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|292654736|ref|YP_003534633.1| - 1.1e-07 31.6 8.5 1.6e-07 31.0 8.5 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|292654736|ref|YP_003534633.1| - 0.00051 19.9 0.0 0.0057 16.5 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tetraspanin PF00335.20 gi|292654736|ref|YP_003534633.1| - 0.3 10.7 0.8 0.45 10.2 0.8 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF981 PF06168.11 gi|292654736|ref|YP_003534633.1| - 0.53 10.2 7.6 0.72 9.8 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) Glyoxalase_6 PF18029.1 gi|292654737|ref|YP_003534634.1| - 3.8e-06 27.6 1.8 5.3e-06 27.2 0.4 1.9 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|292654737|ref|YP_003534634.1| - 0.00038 20.7 0.0 0.05 13.8 0.0 2.9 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|292654737|ref|YP_003534634.1| - 0.015 15.5 0.1 0.87 9.9 0.0 2.4 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TxDE PF18711.1 gi|292654737|ref|YP_003534634.1| - 0.023 14.8 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 Toxoflavin-degrading enzyme BPL_LplA_LipB PF03099.19 gi|292654738|ref|YP_003534635.1| - 8.2e-10 38.7 0.0 1.4e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family AP_endonuc_2 PF01261.24 gi|292654739|ref|YP_003534636.1| - 2.8e-26 92.3 0.6 5.7e-26 91.3 0.2 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Methyltransf_11 PF08241.12 gi|292654740|ref|YP_003534637.1| - 1.2e-19 70.7 0.3 3.2e-19 69.4 0.2 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292654740|ref|YP_003534637.1| - 1.9e-19 70.1 0.3 5e-19 68.8 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654740|ref|YP_003534637.1| - 5.8e-16 58.6 0.0 8.6e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292654740|ref|YP_003534637.1| - 2e-11 44.0 0.0 3.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292654740|ref|YP_003534637.1| - 8.1e-11 42.6 0.0 1.6e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292654740|ref|YP_003534637.1| - 8.7e-10 38.3 0.0 1.5e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|292654740|ref|YP_003534637.1| - 1.2e-07 31.5 0.0 2.3e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|292654740|ref|YP_003534637.1| - 3.2e-05 24.0 0.0 5.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|292654740|ref|YP_003534637.1| - 4.7e-05 23.6 0.1 6.6e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|292654740|ref|YP_003534637.1| - 0.00044 20.1 0.0 0.0018 18.0 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|292654740|ref|YP_003534637.1| - 0.0014 18.2 0.1 0.0025 17.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|292654740|ref|YP_003534637.1| - 0.0018 17.0 0.0 0.0024 16.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|292654740|ref|YP_003534637.1| - 0.0039 16.8 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|292654740|ref|YP_003534637.1| - 0.004 16.5 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|292654740|ref|YP_003534637.1| - 0.007 15.5 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|292654740|ref|YP_003534637.1| - 0.015 14.3 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TrkA_N PF02254.18 gi|292654740|ref|YP_003534637.1| - 0.019 15.3 0.1 0.051 13.8 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain PrmA PF06325.13 gi|292654740|ref|YP_003534637.1| - 0.037 13.4 0.2 0.053 12.9 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|292654740|ref|YP_003534637.1| - 0.15 11.5 0.0 0.37 10.2 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase NAD_binding_10 PF13460.6 gi|292654741|ref|YP_003534638.1| - 6.1e-29 101.2 0.2 7.5e-29 100.9 0.2 1.0 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|292654741|ref|YP_003534638.1| - 2.8e-06 27.0 0.0 3.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|292654741|ref|YP_003534638.1| - 2.2e-05 24.1 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|292654741|ref|YP_003534638.1| - 0.00057 20.1 0.1 0.00084 19.6 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain RmlD_sub_bind PF04321.17 gi|292654741|ref|YP_003534638.1| - 0.0036 16.5 0.0 0.0051 16.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|292654741|ref|YP_003534638.1| - 0.02 14.4 0.3 0.037 13.5 0.2 1.5 2 0 0 2 2 2 0 short chain dehydrogenase DapB_N PF01113.20 gi|292654741|ref|YP_003534638.1| - 0.024 14.8 0.1 0.035 14.2 0.1 1.4 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DFP PF04127.15 gi|292654741|ref|YP_003534638.1| - 0.039 13.8 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein GDP_Man_Dehyd PF16363.5 gi|292654741|ref|YP_003534638.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|292654741|ref|YP_003534638.1| - 0.22 10.5 0.0 0.33 9.9 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HxlR PF01638.17 gi|292654742|ref|YP_003534639.1| - 2.8e-21 75.2 0.0 3.4e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|292654742|ref|YP_003534639.1| - 2.7e-07 30.4 0.0 3.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|292654742|ref|YP_003534639.1| - 1.9e-06 27.9 0.0 2.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|292654742|ref|YP_003534639.1| - 2.5e-05 24.7 0.1 4.6e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|292654742|ref|YP_003534639.1| - 0.00022 21.1 0.0 0.0006 19.7 0.0 1.6 2 0 0 2 2 2 1 MarR family Replic_Relax PF13814.6 gi|292654742|ref|YP_003534639.1| - 0.00026 21.1 0.0 0.00034 20.7 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_IclR PF09339.10 gi|292654742|ref|YP_003534639.1| - 0.00038 20.2 0.1 0.00065 19.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|292654742|ref|YP_003534639.1| - 0.00039 20.3 0.0 0.00057 19.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|292654742|ref|YP_003534639.1| - 0.0017 18.2 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|292654742|ref|YP_003534639.1| - 0.0027 17.5 0.0 0.0041 17.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|292654742|ref|YP_003534639.1| - 0.0053 16.7 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|292654742|ref|YP_003534639.1| - 0.0081 16.2 0.1 0.012 15.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292654742|ref|YP_003534639.1| - 0.023 14.7 0.1 0.042 13.8 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|292654742|ref|YP_003534639.1| - 0.03 14.0 0.1 0.048 13.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.9 gi|292654742|ref|YP_003534639.1| - 0.035 14.2 0.1 7.8 6.7 0.0 2.5 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.6 gi|292654742|ref|YP_003534639.1| - 0.05 13.3 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TnsD PF15978.5 gi|292654742|ref|YP_003534639.1| - 0.062 12.3 0.0 0.068 12.2 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_24 PF13412.6 gi|292654742|ref|YP_003534639.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|292654742|ref|YP_003534639.1| - 0.15 12.0 0.0 0.99 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain zinc_ribbon_13 PF09855.9 gi|292654743|ref|YP_003534640.1| - 2.6e-27 94.8 0.2 2.8e-27 94.6 0.2 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|292654743|ref|YP_003534640.1| - 0.00034 20.9 0.2 0.00045 20.5 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|292654743|ref|YP_003534640.1| - 0.0021 17.4 2.0 0.65 9.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292654743|ref|YP_003534640.1| - 0.0044 17.0 2.0 1.6 8.8 0.3 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain CpXC PF14353.6 gi|292654743|ref|YP_003534640.1| - 0.013 15.5 0.2 0.021 14.9 0.2 1.3 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|292654743|ref|YP_003534640.1| - 0.017 14.7 0.4 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|292654743|ref|YP_003534640.1| - 0.017 15.2 2.9 2.7 8.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|292654743|ref|YP_003534640.1| - 0.035 13.9 2.2 2.7 7.9 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|292654743|ref|YP_003534640.1| - 0.05 13.5 1.0 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|292654743|ref|YP_003534640.1| - 0.076 13.2 1.3 1.7 8.8 0.4 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf_C2H2_10 PF18414.1 gi|292654743|ref|YP_003534640.1| - 0.12 11.9 0.8 0.64 9.6 0.1 2.0 2 0 0 2 2 2 0 C2H2 type zinc-finger zinc_ribbon_2 PF13240.6 gi|292654743|ref|YP_003534640.1| - 0.14 11.9 6.4 4.5 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292654743|ref|YP_003534640.1| - 0.15 12.0 2.8 3.4 7.7 0.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|292654743|ref|YP_003534640.1| - 0.17 11.7 0.9 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.7 gi|292654743|ref|YP_003534640.1| - 0.18 12.3 1.7 1.2 9.6 0.1 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.11 gi|292654743|ref|YP_003534640.1| - 0.18 12.0 1.4 9.9 6.4 0.3 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.13 gi|292654743|ref|YP_003534640.1| - 0.32 10.7 2.8 2.5 7.9 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|292654743|ref|YP_003534640.1| - 0.49 10.2 5.8 5.1 6.9 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain RhlB PF12300.8 gi|292654744|ref|YP_003534641.1| - 2.1 8.5 13.6 2.2 8.4 13.6 1.1 1 0 0 1 1 1 0 ATP-dependent RNA helicase RhlB ATP_bind_3 PF01171.20 gi|292654746|ref|YP_003534643.1| - 4e-13 49.5 0.0 5.9e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|292654746|ref|YP_003534643.1| - 4.8e-05 23.5 0.0 7.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|292654746|ref|YP_003534643.1| - 0.00051 19.2 0.0 0.00086 18.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|292654746|ref|YP_003534643.1| - 0.0083 14.9 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|292654746|ref|YP_003534643.1| - 0.019 14.4 1.1 0.019 14.4 1.1 3.1 4 0 0 4 4 4 0 Zinc-ribbon ThiI PF02568.14 gi|292654746|ref|YP_003534643.1| - 0.029 13.9 0.0 0.064 12.8 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Lar_restr_allev PF14354.6 gi|292654746|ref|YP_003534643.1| - 0.11 12.8 5.9 1 9.8 0.4 3.3 3 0 0 3 3 3 0 Restriction alleviation protein Lar Tubulin PF00091.25 gi|292654747|ref|YP_003534644.1| - 1.6e-37 129.6 3.3 4.8e-37 128.1 3.3 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|292654747|ref|YP_003534644.1| - 4.2e-35 119.9 0.9 4.2e-35 119.9 0.9 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|292654747|ref|YP_003534644.1| - 0.034 13.5 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|292654747|ref|YP_003534644.1| - 0.098 12.5 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Csm1 subunit domain B ZT_dimer PF16916.5 gi|292654747|ref|YP_003534644.1| - 0.16 12.1 0.0 0.4 10.8 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter RHH_1 PF01402.21 gi|292654748|ref|YP_003534645.1| - 5.7e-08 32.4 0.1 8.3e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|292654748|ref|YP_003534645.1| - 0.00021 21.4 0.0 0.00023 21.3 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DZR PF12773.7 gi|292654749|ref|YP_003534646.1| - 3.7e-07 30.1 9.6 1e-06 28.7 9.8 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|292654749|ref|YP_003534646.1| - 6.8e-07 28.8 14.6 0.0017 18.0 6.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|292654749|ref|YP_003534646.1| - 3.6e-06 27.6 6.0 0.00064 20.4 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon family RHH_1 PF01402.21 gi|292654749|ref|YP_003534646.1| - 6.9e-06 25.8 1.5 6.9e-06 25.8 1.5 3.4 2 2 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-ribbon_3 PF13248.6 gi|292654749|ref|YP_003534646.1| - 7.1e-06 25.3 13.9 0.0096 15.3 5.8 2.6 1 1 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|292654749|ref|YP_003534646.1| - 0.01 15.5 10.2 0.24 11.1 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PolC_DP2 PF03833.13 gi|292654749|ref|YP_003534646.1| - 0.014 13.3 0.8 0.016 13.1 0.8 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.6 gi|292654749|ref|YP_003534646.1| - 0.019 14.8 3.9 0.2 11.5 3.9 2.3 1 1 0 1 1 1 0 Cysteine-rich KTR PSK_trans_fac PF07704.11 gi|292654749|ref|YP_003534646.1| - 0.026 15.3 7.5 1 10.2 7.5 2.4 1 1 0 1 1 1 0 Rv0623-like transcription factor Zn-ribbon_8 PF09723.10 gi|292654749|ref|YP_003534646.1| - 0.037 14.1 11.7 1.2 9.3 2.3 3.4 2 1 1 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|292654749|ref|YP_003534646.1| - 0.038 13.6 5.8 1.5 8.5 0.0 3.3 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF35_N PF12172.8 gi|292654749|ref|YP_003534646.1| - 0.047 13.6 8.5 0.15 11.9 2.0 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|292654749|ref|YP_003534646.1| - 0.048 13.7 8.0 0.25 11.4 1.2 2.5 2 1 1 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Glyco_hydro_46 PF01374.18 gi|292654749|ref|YP_003534646.1| - 0.051 13.2 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 46 zinc-ribbons_6 PF07191.12 gi|292654749|ref|YP_003534646.1| - 0.082 12.9 7.9 0.32 11.0 4.8 2.2 1 1 1 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|292654749|ref|YP_003534646.1| - 0.098 12.8 10.6 0.42 10.8 4.0 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_7 PF02591.15 gi|292654749|ref|YP_003534646.1| - 0.18 12.0 7.1 4 7.7 0.1 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain Nudix_N_2 PF14803.6 gi|292654749|ref|YP_003534646.1| - 0.41 10.6 13.9 1.2 9.2 2.5 3.7 3 1 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|292654749|ref|YP_003534646.1| - 0.45 10.6 5.6 1.1 9.4 5.6 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C3HC4_3 PF13920.6 gi|292654749|ref|YP_003534646.1| - 0.58 10.1 6.6 3.1 7.7 1.1 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2 PF00096.26 gi|292654749|ref|YP_003534646.1| - 0.74 10.4 6.0 18 6.0 0.0 3.5 3 0 0 3 3 3 0 Zinc finger, C2H2 type FUSC PF04632.12 gi|292654749|ref|YP_003534646.1| - 0.79 8.2 2.1 1 7.8 2.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family zf_C2H2_10 PF18414.1 gi|292654749|ref|YP_003534646.1| - 1.3 8.6 4.6 46 3.7 0.1 3.1 2 1 1 3 3 3 0 C2H2 type zinc-finger Zn_ribbon_SprT PF17283.2 gi|292654749|ref|YP_003534646.1| - 1.5 8.8 12.3 5 7.1 0.3 3.6 3 1 0 3 3 3 0 SprT-like zinc ribbon domain TerY_C PF15616.6 gi|292654749|ref|YP_003534646.1| - 2.1 8.5 6.7 0.55 10.3 3.1 1.7 1 1 1 2 2 2 0 TerY-C metal binding domain NMD3 PF04981.13 gi|292654749|ref|YP_003534646.1| - 2.3 7.6 5.9 5.4 6.4 5.9 1.6 1 0 0 1 1 1 0 NMD3 family Ribosomal_L32p PF01783.23 gi|292654749|ref|YP_003534646.1| - 2.8 8.3 9.5 0.28 11.5 2.6 2.6 1 1 2 3 3 3 0 Ribosomal L32p protein family Prok-RING_1 PF14446.6 gi|292654749|ref|YP_003534646.1| - 4.4 7.3 11.1 19 5.3 5.8 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|292654749|ref|YP_003534646.1| - 6.4 6.4 15.0 11 5.6 0.2 3.4 2 1 1 3 3 3 0 TFIIB zinc-binding Aldo_ket_red PF00248.21 gi|292654750|ref|YP_003534647.1| - 2.2e-62 210.9 0.0 2.5e-62 210.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Hydrolase PF00702.26 gi|292654751|ref|YP_003534648.1| - 9.4e-10 39.1 0.4 5.5e-09 36.6 0.4 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292654751|ref|YP_003534648.1| - 1.3e-05 25.2 0.5 4.1e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|292654751|ref|YP_003534648.1| - 0.00011 22.3 0.0 0.00024 21.3 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292654751|ref|YP_003534648.1| - 0.016 15.7 0.4 0.025 15.0 0.4 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_31 PF13560.6 gi|292654751|ref|YP_003534648.1| - 0.67 10.3 0.1 0.67 10.3 0.1 3.3 4 1 0 4 4 4 0 Helix-turn-helix domain CobD_Cbib PF03186.13 gi|292654752|ref|YP_003534649.1| - 5.5e-71 239.0 14.8 6.7e-71 238.7 14.8 1.0 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|292654753|ref|YP_003534650.1| - 7e-41 140.7 22.6 8.2e-41 140.4 22.6 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|292654754|ref|YP_003534651.1| - 2.3e-16 60.6 3.5 3.4e-16 60.0 3.4 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|292654754|ref|YP_003534651.1| - 0.0019 18.0 0.1 0.0039 16.9 0.1 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|292654754|ref|YP_003534651.1| - 0.0032 17.4 0.0 0.052 13.5 0.0 2.1 2 0 0 2 2 2 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|292654754|ref|YP_003534651.1| - 0.039 13.5 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Aminotran_1_2 PF00155.21 gi|292654756|ref|YP_003534653.1| - 1.3e-41 143.0 0.0 1.6e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|292654756|ref|YP_003534653.1| - 0.0044 16.4 0.0 0.0075 15.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|292654756|ref|YP_003534653.1| - 0.088 12.1 0.0 0.69 9.1 0.0 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase CbiZ PF01955.18 gi|292654757|ref|YP_003534654.1| - 3.3e-43 148.0 0.2 3.9e-43 147.8 0.2 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.21 gi|292654758|ref|YP_003534655.1| - 8.1e-22 77.9 0.0 1e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CbiA PF01656.23 gi|292654760|ref|YP_003534657.1| - 1e-18 67.6 0.0 1.6e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|292654760|ref|YP_003534657.1| - 1.2e-12 47.9 0.7 1.3e-06 28.0 0.3 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|292654760|ref|YP_003534657.1| - 1.4e-11 44.6 0.0 2.1e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|292654760|ref|YP_003534657.1| - 7.3e-09 35.5 0.0 5.7e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|292654760|ref|YP_003534657.1| - 4.8e-06 26.2 0.0 7.4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|292654760|ref|YP_003534657.1| - 2.6e-05 23.6 0.5 0.0034 16.6 0.5 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|292654760|ref|YP_003534657.1| - 5.8e-05 23.0 0.2 0.00061 19.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|292654760|ref|YP_003534657.1| - 0.0018 17.6 1.5 0.029 13.7 1.5 2.1 1 1 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.6 gi|292654760|ref|YP_003534657.1| - 0.026 14.2 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|292654760|ref|YP_003534657.1| - 0.035 13.4 0.3 0.055 12.7 0.3 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_30 PF13604.6 gi|292654760|ref|YP_003534657.1| - 0.038 13.7 1.2 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|292654760|ref|YP_003534657.1| - 0.058 12.6 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_25 PF13481.6 gi|292654760|ref|YP_003534657.1| - 0.14 11.8 2.7 0.29 10.7 2.7 1.8 1 1 0 1 1 1 0 AAA domain OsmC PF02566.19 gi|292654762|ref|YP_003534659.1| - 1.2e-21 77.0 0.0 1.9e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein T2SSM_b PF10741.9 gi|292654762|ref|YP_003534659.1| - 0.076 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b SnoaL PF07366.12 gi|292654764|ref|YP_003534661.1| - 1.2e-35 122.1 0.0 1.4e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|292654764|ref|YP_003534661.1| - 2.1e-19 70.0 0.1 2.6e-19 69.8 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|292654764|ref|YP_003534661.1| - 0.00073 19.9 0.0 0.00094 19.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) ACT PF01842.25 gi|292654765|ref|YP_003534662.1| - 3.2e-05 23.6 0.4 0.13 12.0 0.0 3.4 3 1 0 3 3 3 3 ACT domain Sigma70_r1_1 PF03979.14 gi|292654765|ref|YP_003534662.1| - 0.022 14.8 0.0 0.063 13.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 Chordopox_RPO7 PF05864.12 gi|292654765|ref|YP_003534662.1| - 0.042 14.1 0.1 10 6.5 0.1 2.4 1 1 1 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Homoserine_dh PF00742.19 gi|292654766|ref|YP_003534663.1| - 2e-44 151.6 0.2 3.3e-44 150.9 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|292654766|ref|YP_003534663.1| - 5.4e-08 32.9 0.4 1.1e-07 31.8 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|292654766|ref|YP_003534663.1| - 9.4e-06 26.3 2.0 1.5e-05 25.6 0.8 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.16 gi|292654766|ref|YP_003534663.1| - 0.0024 17.5 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|292654766|ref|YP_003534663.1| - 0.0058 16.9 0.1 0.01 16.1 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|292654766|ref|YP_003534663.1| - 0.0098 15.8 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|292654766|ref|YP_003534663.1| - 0.032 14.2 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|292654766|ref|YP_003534663.1| - 0.048 13.2 1.6 0.074 12.6 0.4 2.0 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|292654766|ref|YP_003534663.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHquinase_I PF01487.15 gi|292654767|ref|YP_003534664.1| - 1.7e-41 143.0 0.0 2e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHquinase_I PF01487.15 gi|292654768|ref|YP_003534665.1| - 2.3e-35 122.9 0.0 2.7e-35 122.7 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase CENP-P PF13096.6 gi|292654768|ref|YP_003534665.1| - 0.06 13.0 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P Epimerase PF01370.21 gi|292654769|ref|YP_003534666.1| - 1.8e-22 80.0 0.0 2.3e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292654769|ref|YP_003534666.1| - 2.2e-13 49.9 0.0 3.5e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|292654769|ref|YP_003534666.1| - 3.7e-13 49.6 0.4 1.4e-12 47.7 0.2 2.2 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|292654769|ref|YP_003534666.1| - 2.4e-10 40.0 0.0 3.2e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|292654769|ref|YP_003534666.1| - 2.1e-09 37.5 0.0 3.7e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|292654769|ref|YP_003534666.1| - 3.4e-08 33.0 0.0 1.2e-06 27.9 0.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|292654769|ref|YP_003534666.1| - 2e-07 30.4 0.0 4.9e-07 29.1 0.0 1.6 2 1 0 2 2 2 1 RmlD substrate binding domain KR PF08659.10 gi|292654769|ref|YP_003534666.1| - 0.076 12.9 0.0 2 8.3 0.0 2.2 1 1 0 1 1 1 0 KR domain NmrA PF05368.13 gi|292654769|ref|YP_003534666.1| - 0.16 11.5 0.1 0.4 10.2 0.1 1.6 1 1 0 1 1 1 0 NmrA-like family IclR PF01614.18 gi|292654770|ref|YP_003534667.1| - 2.1e-29 101.9 0.0 3.5e-29 101.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|292654770|ref|YP_003534667.1| - 2.2e-08 33.8 0.0 5.3e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292654770|ref|YP_003534667.1| - 0.0002 21.4 0.0 0.00039 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654770|ref|YP_003534667.1| - 0.0022 17.8 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292654770|ref|YP_003534667.1| - 0.032 13.8 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 gi|292654770|ref|YP_003534667.1| - 0.038 13.8 0.0 0.099 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Sigma70_r4_2 PF08281.12 gi|292654770|ref|YP_003534667.1| - 0.095 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 RraA-like PF03737.15 gi|292654771|ref|YP_003534668.1| - 1.7e-41 141.9 2.6 2.1e-41 141.6 2.6 1.1 1 0 0 1 1 1 1 Aldolase/RraA TctC PF03401.14 gi|292654772|ref|YP_003534669.1| - 4.2e-45 153.9 0.0 4.9e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor TAT_signal PF10518.9 gi|292654772|ref|YP_003534669.1| - 0.00071 19.3 2.1 0.00071 19.3 2.1 2.9 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence ADH_N PF08240.12 gi|292654773|ref|YP_003534670.1| - 2.9e-28 97.9 2.1 4.7e-28 97.2 0.4 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|292654773|ref|YP_003534670.1| - 9.4e-21 74.1 0.0 1.4e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|292654773|ref|YP_003534670.1| - 1e-10 41.5 0.1 1.5e-10 40.9 0.1 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|292654773|ref|YP_003534670.1| - 1.7e-06 29.1 0.0 3.3e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|292654773|ref|YP_003534670.1| - 0.021 14.7 0.0 0.06 13.3 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase LpxI_N PF17930.1 gi|292654773|ref|YP_003534670.1| - 0.026 14.4 0.1 0.52 10.2 0.1 2.2 2 0 0 2 2 2 0 LpxI N-terminal domain Pyr_redox_2 PF07992.14 gi|292654773|ref|YP_003534670.1| - 0.038 13.2 0.2 0.13 11.4 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292654773|ref|YP_003534670.1| - 0.11 11.1 0.2 0.17 10.6 0.2 1.2 1 0 0 1 1 1 0 HI0933-like protein adh_short_C2 PF13561.6 gi|292654773|ref|YP_003534670.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Lactamase_B PF00753.27 gi|292654774|ref|YP_003534671.1| - 3.6e-12 46.7 8.1 6.7e-12 45.8 7.0 1.9 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|292654774|ref|YP_003534671.1| - 3.6e-06 26.6 0.0 5.1e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|292654774|ref|YP_003534671.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|292654774|ref|YP_003534671.1| - 0.026 14.0 0.1 0.035 13.6 0.1 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain TctB PF07331.11 gi|292654775|ref|YP_003534672.1| - 4.8e-17 62.5 18.9 6.2e-17 62.1 18.9 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TctA PF01970.16 gi|292654776|ref|YP_003534673.1| - 2.5e-137 457.9 37.4 3.5e-137 457.5 37.4 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Usp PF00582.26 gi|292654777|ref|YP_003534674.1| - 1.1e-22 81.1 2.3 1.2e-22 80.9 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Lactamase_B PF00753.27 gi|292654778|ref|YP_003534675.1| - 4.9e-06 26.7 9.5 2.1e-05 24.6 9.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|292654778|ref|YP_003534675.1| - 0.00013 21.5 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PepSY_TM PF03929.16 gi|292654781|ref|YP_003534678.1| - 0.078 12.6 0.1 0.086 12.5 0.1 1.2 1 0 0 1 1 1 0 PepSY-associated TM region Pilin_N PF07790.11 gi|292654782|ref|YP_003534679.1| - 0.34 11.9 1.9 0.67 10.9 1.9 1.5 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|292654783|ref|YP_003534680.1| - 0.0048 17.8 0.3 0.0087 17.0 0.3 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal TcdB_toxin_midN PF12256.8 gi|292654783|ref|YP_003534680.1| - 0.074 12.4 0.4 0.15 11.5 0.1 1.7 2 0 0 2 2 2 0 Insecticide toxin TcdB middle/N-terminal region SWIRM-assoc_3 PF16498.5 gi|292654783|ref|YP_003534680.1| - 0.088 13.1 0.2 0.15 12.3 0.2 1.4 1 0 0 1 1 1 0 SWIRM-associated domain at the C-terminal T2SSF PF00482.23 gi|292654784|ref|YP_003534681.1| - 5.2e-20 71.7 1.5 8.9e-10 38.6 0.7 2.7 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|292654785|ref|YP_003534682.1| - 3.8e-25 88.5 0.2 1.1e-24 86.9 0.1 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|292654785|ref|YP_003534682.1| - 0.0071 15.9 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|292654785|ref|YP_003534682.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|292654785|ref|YP_003534682.1| - 0.015 15.5 0.3 0.78 9.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|292654785|ref|YP_003534682.1| - 0.019 14.7 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|292654785|ref|YP_003534682.1| - 0.067 13.7 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain UDPG_MGDP_dh PF00984.19 gi|292654785|ref|YP_003534682.1| - 0.13 12.4 0.0 3.1 8.1 0.0 2.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain HisKA_7TM PF16927.5 gi|292654786|ref|YP_003534683.1| - 7e-54 183.2 21.5 8.7e-54 182.9 21.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|292654786|ref|YP_003534683.1| - 1.5e-12 48.0 0.0 3.3e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292654786|ref|YP_003534683.1| - 6.9e-11 42.4 2.4 1.1e-08 35.3 1.1 3.0 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|292654786|ref|YP_003534683.1| - 2.7e-09 36.8 0.1 1.3e-08 34.6 0.1 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|292654786|ref|YP_003534683.1| - 4.5e-09 36.3 0.5 1.4e-07 31.5 0.2 2.8 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|292654786|ref|YP_003534683.1| - 1e-07 31.9 0.2 3e-07 30.5 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|292654786|ref|YP_003534683.1| - 6e-06 26.4 0.0 5.9e-05 23.3 0.0 2.4 1 1 0 1 1 1 1 PAS domain DUF2339 PF10101.9 gi|292654786|ref|YP_003534683.1| - 0.0016 17.1 23.5 0.0021 16.7 23.5 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) HATPase_c_3 PF13589.6 gi|292654786|ref|YP_003534683.1| - 0.037 13.9 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4231 PF14015.6 gi|292654786|ref|YP_003534683.1| - 0.17 12.3 0.1 0.17 12.3 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4231) UbiA PF01040.18 gi|292654787|ref|YP_003534684.1| - 8.2e-15 54.8 20.8 1.4e-14 54.0 20.8 1.4 1 0 0 1 1 1 1 UbiA prenyltransferase family HHH_5 PF14520.6 gi|292654787|ref|YP_003534684.1| - 0.1 13.2 0.0 0.25 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain ThiS PF02597.20 gi|292654788|ref|YP_003534685.1| - 2.6e-06 28.0 0.1 4.3e-05 24.1 0.1 2.2 1 1 0 1 1 1 1 ThiS family zf-ribbon_3 PF13248.6 gi|292654789|ref|YP_003534686.1| - 3.3e-05 23.1 1.0 5.3e-05 22.5 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|292654789|ref|YP_003534686.1| - 7.5e-05 22.3 0.7 0.00013 21.5 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|292654789|ref|YP_003534686.1| - 0.0004 20.4 0.4 0.00063 19.7 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|292654789|ref|YP_003534686.1| - 0.00051 19.5 0.9 0.19 11.3 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|292654789|ref|YP_003534686.1| - 0.0064 17.2 0.4 0.01 16.6 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|292654789|ref|YP_003534686.1| - 0.019 15.0 0.5 0.033 14.2 0.5 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|292654789|ref|YP_003534686.1| - 0.019 14.8 2.2 0.035 14.0 2.2 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4084 PF13321.6 gi|292654789|ref|YP_003534686.1| - 0.048 13.2 0.1 0.064 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4084) Prim_Zn_Ribbon PF08273.12 gi|292654789|ref|YP_003534686.1| - 0.11 12.7 2.4 1.3 9.4 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.10 gi|292654789|ref|YP_003534686.1| - 0.13 12.0 0.6 18 5.2 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ACC PF17848.1 gi|292654789|ref|YP_003534686.1| - 0.85 9.8 2.7 63 3.8 0.0 3.1 2 1 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain UPF0547 PF10571.9 gi|292654789|ref|YP_003534686.1| - 6.1 7.0 6.5 30 4.8 6.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 EamA PF00892.20 gi|292654790|ref|YP_003534687.1| - 1.9e-18 67.0 18.9 2e-18 66.9 18.9 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|292654790|ref|YP_003534687.1| - 0.00019 20.6 8.0 0.00019 20.6 8.0 1.6 1 1 0 1 1 1 1 Magnesium transporter NIPA Methyltransf_17 PF12692.7 gi|292654790|ref|YP_003534687.1| - 0.13 12.2 0.1 1.1 9.3 0.0 1.9 1 1 1 2 2 2 0 S-adenosyl-L-methionine methyltransferase DUF2157 PF09925.9 gi|292654790|ref|YP_003534687.1| - 6.7 6.5 17.5 0.63 9.8 8.0 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) ABC_tran PF00005.27 gi|292654792|ref|YP_003534689.1| - 6.5e-54 182.2 0.0 9.3e-28 97.4 0.0 2.9 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|292654792|ref|YP_003534689.1| - 2.2e-40 137.0 1.5 2.7e-21 75.9 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292654792|ref|YP_003534689.1| - 8.1e-11 42.3 0.1 5.9e-05 23.0 0.0 4.0 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|292654792|ref|YP_003534689.1| - 8.2e-06 26.1 0.4 0.71 10.1 0.0 3.9 4 0 0 4 4 4 1 AAA domain AAA_5 PF07728.14 gi|292654792|ref|YP_003534689.1| - 0.00025 21.1 0.0 1.1 9.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|292654792|ref|YP_003534689.1| - 0.0024 18.3 5.3 0.27 11.6 0.0 3.4 3 1 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.6 gi|292654792|ref|YP_003534689.1| - 0.0026 17.4 1.6 1.7 8.4 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|292654792|ref|YP_003534689.1| - 0.0026 17.4 0.7 2.4 7.8 0.0 2.8 2 2 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|292654792|ref|YP_003534689.1| - 0.011 15.5 0.0 2.6 7.7 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|292654792|ref|YP_003534689.1| - 0.021 14.4 3.1 14 5.2 0.2 4.3 4 1 0 4 4 4 0 AAA domain AAA_7 PF12775.7 gi|292654792|ref|YP_003534689.1| - 0.022 14.3 0.2 2.5 7.6 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 gi|292654792|ref|YP_003534689.1| - 0.023 15.1 0.2 6.1 7.3 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|292654792|ref|YP_003534689.1| - 0.038 13.7 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|292654792|ref|YP_003534689.1| - 0.047 13.0 0.2 4.7 6.5 0.1 2.5 2 0 0 2 2 2 0 AIG1 family RsgA_GTPase PF03193.16 gi|292654792|ref|YP_003534689.1| - 0.072 13.0 0.6 4.2 7.3 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|292654792|ref|YP_003534689.1| - 0.073 12.4 0.1 9.5 5.5 0.1 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|292654792|ref|YP_003534689.1| - 0.27 11.6 0.1 15 6.0 0.1 2.5 2 0 0 2 2 2 0 RNA helicase SBP_bac_5 PF00496.22 gi|292654793|ref|YP_003534690.1| - 6.4e-88 295.3 0.2 8.6e-88 294.8 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|292654793|ref|YP_003534690.1| - 2e-05 24.2 9.4 3.4e-05 23.5 9.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292654793|ref|YP_003534690.1| - 0.0077 15.6 1.6 0.014 14.7 1.6 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|292654794|ref|YP_003534691.1| - 4e-37 127.7 13.6 6.5e-37 127.1 13.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Baculo_p74 PF04583.12 gi|292654794|ref|YP_003534691.1| - 0.0051 16.3 0.4 0.011 15.3 0.4 1.5 1 1 0 1 1 1 1 Baculoviridae p74 conserved region BPD_transp_1 PF00528.22 gi|292654795|ref|YP_003534692.1| - 3.7e-32 111.6 9.6 3.7e-32 111.6 9.6 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|292654795|ref|YP_003534692.1| - 7.9e-06 25.8 4.7 8e-06 25.7 0.6 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C UCR_TM PF02921.14 gi|292654796|ref|YP_003534693.1| - 0.089 13.3 1.0 9.9 6.7 0.2 2.3 2 0 0 2 2 2 0 Ubiquinol cytochrome reductase transmembrane region PAS_9 PF13426.7 gi|292654797|ref|YP_003534694.1| - 5.2e-51 171.3 0.1 4.7e-23 81.4 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS PF00989.25 gi|292654797|ref|YP_003534694.1| - 7.2e-46 154.8 1.1 3.1e-13 49.7 0.0 5.2 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|292654797|ref|YP_003534694.1| - 1.1e-42 144.8 11.6 8e-15 55.0 0.2 4.7 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|292654797|ref|YP_003534694.1| - 1.2e-24 85.8 0.2 1.2e-07 31.6 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|292654797|ref|YP_003534694.1| - 8.8e-22 77.2 0.0 1.3e-09 38.2 0.0 3.9 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|292654797|ref|YP_003534694.1| - 5.7e-11 42.9 0.0 1.3e-10 41.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|292654797|ref|YP_003534694.1| - 1.2e-07 31.7 0.2 8.4e-07 29.0 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|292654797|ref|YP_003534694.1| - 9.5e-06 25.8 1.2 0.91 9.7 0.1 5.3 4 1 0 4 4 4 2 PAS fold PAS_10 PF13596.6 gi|292654797|ref|YP_003534694.1| - 9.6e-06 26.1 0.0 0.25 12.0 0.0 4.9 5 0 0 5 5 5 1 PAS domain HATPase_c_3 PF13589.6 gi|292654797|ref|YP_003534694.1| - 0.0052 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase REPA_OB_2 PF16900.5 gi|292654797|ref|YP_003534694.1| - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Replication protein A OB domain V-ATPase_G_2 PF16999.5 gi|292654797|ref|YP_003534694.1| - 0.7 10.3 8.1 1 9.8 6.5 2.2 2 0 0 2 2 1 0 Vacuolar (H+)-ATPase G subunit HisKA PF00512.25 gi|292654797|ref|YP_003534694.1| - 3.2 7.9 8.1 0.33 11.0 1.4 2.9 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Big_9 PF17963.1 gi|292654797|ref|YP_003534694.1| - 3.3 8.5 6.0 7.8 7.3 1.8 3.0 2 0 0 2 2 2 0 Bacterial Ig domain ATPase PF06745.13 gi|292654798|ref|YP_003534695.1| - 7.7e-72 241.4 0.0 2.9e-37 128.3 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|292654798|ref|YP_003534695.1| - 2e-17 63.4 0.0 7.7e-09 35.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|292654798|ref|YP_003534695.1| - 6e-09 35.5 0.0 0.00019 20.8 0.0 3.0 3 0 0 3 3 3 2 Rad51 DnaB_C PF03796.15 gi|292654798|ref|YP_003534695.1| - 1.4e-07 31.2 0.0 6.8e-05 22.3 0.0 2.7 3 1 0 3 3 3 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|292654798|ref|YP_003534695.1| - 3.6e-07 30.7 1.1 8.3e-06 26.3 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292654798|ref|YP_003534695.1| - 3.1e-06 27.5 0.0 4.7e-05 23.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain RecA PF00154.21 gi|292654798|ref|YP_003534695.1| - 6e-06 25.9 0.1 0.0011 18.5 0.1 2.4 2 1 0 2 2 2 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|292654798|ref|YP_003534695.1| - 6.2e-06 26.1 0.0 0.091 12.5 0.0 3.1 2 1 0 2 2 2 2 AAA domain GvpD PF07088.11 gi|292654798|ref|YP_003534695.1| - 8.2e-06 24.7 0.0 0.00018 20.3 0.0 2.4 2 1 0 2 2 2 1 GvpD gas vesicle protein CbiA PF01656.23 gi|292654798|ref|YP_003534695.1| - 0.00034 20.7 0.1 0.0013 18.8 0.0 2.0 2 0 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|292654798|ref|YP_003534695.1| - 0.00055 20.5 0.0 0.035 14.6 0.0 2.5 2 0 0 2 2 2 1 ABC transporter PAXNEB PF05625.11 gi|292654798|ref|YP_003534695.1| - 0.00076 18.7 2.5 0.062 12.4 1.3 2.4 2 0 0 2 2 2 1 PAXNEB protein AAA_30 PF13604.6 gi|292654798|ref|YP_003534695.1| - 0.0013 18.5 0.5 0.023 14.4 0.6 2.4 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|292654798|ref|YP_003534695.1| - 0.0016 18.4 0.0 0.43 10.5 0.0 2.9 2 1 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|292654798|ref|YP_003534695.1| - 0.0037 17.0 2.5 0.059 13.1 0.7 2.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|292654798|ref|YP_003534695.1| - 0.0046 16.7 0.0 0.19 11.4 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein MEDS PF14417.6 gi|292654798|ref|YP_003534695.1| - 0.0089 15.9 0.2 0.3 10.9 0.1 2.9 2 2 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF2075 PF09848.9 gi|292654798|ref|YP_003534695.1| - 0.01 15.1 0.1 4.4 6.4 0.0 2.5 3 1 0 3 3 2 0 Uncharacterized conserved protein (DUF2075) RsgA_GTPase PF03193.16 gi|292654798|ref|YP_003534695.1| - 0.029 14.3 0.8 0.54 10.2 0.1 2.8 3 0 0 3 3 3 0 RsgA GTPase AAA_28 PF13521.6 gi|292654798|ref|YP_003534695.1| - 0.039 14.2 0.1 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|292654798|ref|YP_003534695.1| - 0.04 14.3 0.0 0.6 10.5 0.0 2.6 3 0 0 3 3 3 0 RNA helicase T2SSE PF00437.20 gi|292654798|ref|YP_003534695.1| - 0.071 12.1 0.0 0.44 9.6 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|292654798|ref|YP_003534695.1| - 0.076 12.5 0.0 6.3 6.3 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|292654798|ref|YP_003534695.1| - 0.078 12.6 0.1 1.8 8.2 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|292654798|ref|YP_003534695.1| - 0.08 13.4 0.0 0.64 10.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|292654798|ref|YP_003534695.1| - 0.081 13.0 0.0 9.8 6.2 0.0 3.2 2 2 1 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|292654798|ref|YP_003534695.1| - 0.097 13.2 0.0 0.27 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|292654798|ref|YP_003534695.1| - 0.16 11.1 0.2 0.31 10.2 0.2 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_23 PF13476.6 gi|292654798|ref|YP_003534695.1| - 0.2 12.2 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ParA PF10609.9 gi|292654798|ref|YP_003534695.1| - 0.2 11.1 0.1 0.35 10.3 0.1 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Sigma54_AID PF00309.20 gi|292654798|ref|YP_003534695.1| - 0.28 11.1 0.1 1.2 9.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 factor, Activator interacting domain (AID) Cdc6_C PF09079.11 gi|292654799|ref|YP_003534696.1| - 5e-21 74.5 0.0 1.6e-20 72.8 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|292654799|ref|YP_003534696.1| - 8.2e-11 42.3 0.2 3.1e-10 40.5 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|292654799|ref|YP_003534696.1| - 2.2e-09 37.9 0.1 1.8e-07 31.7 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|292654799|ref|YP_003534696.1| - 1.7e-08 35.0 0.0 4.2e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|292654799|ref|YP_003534696.1| - 0.00036 20.0 0.0 0.00063 19.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|292654799|ref|YP_003534696.1| - 0.0018 17.5 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|292654799|ref|YP_003534696.1| - 0.0029 17.6 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|292654799|ref|YP_003534696.1| - 0.0039 17.1 0.0 0.0087 16.0 0.0 1.6 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|292654799|ref|YP_003534696.1| - 0.011 14.9 0.0 0.069 12.3 0.0 2.1 3 0 0 3 3 3 0 NB-ARC domain AAA_5 PF07728.14 gi|292654799|ref|YP_003534696.1| - 0.019 14.9 0.0 0.1 12.6 0.0 2.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|292654799|ref|YP_003534696.1| - 0.029 14.9 0.1 0.26 11.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|292654799|ref|YP_003534696.1| - 0.038 13.7 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|292654799|ref|YP_003534696.1| - 0.042 13.4 0.0 5 6.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain Phage-MuB_C PF09077.11 gi|292654799|ref|YP_003534696.1| - 0.062 13.2 0.3 0.14 12.1 0.3 1.6 1 0 0 1 1 1 0 Mu B transposition protein, C terminal RNA_helicase PF00910.22 gi|292654799|ref|YP_003534696.1| - 0.071 13.5 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|292654799|ref|YP_003534696.1| - 0.071 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|292654799|ref|YP_003534696.1| - 0.096 12.7 0.0 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 gi|292654799|ref|YP_003534696.1| - 0.18 11.6 0.2 5.6 6.7 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase DUF4129 PF13559.6 gi|292654800|ref|YP_003534697.1| - 4e-11 43.0 4.0 4e-11 43.0 4.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) MHYT PF03707.16 gi|292654800|ref|YP_003534697.1| - 0.052 13.7 0.5 0.052 13.7 0.5 3.4 3 1 1 4 4 4 0 Bacterial signalling protein N terminal repeat Phage_holin_3_6 PF07332.11 gi|292654801|ref|YP_003534698.1| - 0.0026 17.8 0.7 0.0055 16.7 0.7 1.5 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF58 PF01882.18 gi|292654802|ref|YP_003534699.1| - 1.7e-22 79.5 0.6 1.7e-22 79.5 0.6 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|292654802|ref|YP_003534699.1| - 3.9e-08 33.5 4.9 3.9e-08 33.5 4.9 2.4 2 1 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|292654802|ref|YP_003534699.1| - 0.00047 20.4 1.8 0.0016 18.6 1.4 2.1 1 1 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|292654802|ref|YP_003534699.1| - 0.058 13.7 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 CARDB AAA_3 PF07726.11 gi|292654804|ref|YP_003534701.1| - 2.4e-66 221.5 0.5 5.1e-66 220.5 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|292654804|ref|YP_003534701.1| - 3.6e-20 71.6 2.2 9.6e-20 70.2 2.2 1.8 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|292654804|ref|YP_003534701.1| - 1.3e-14 54.4 0.0 4.8e-14 52.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|292654804|ref|YP_003534701.1| - 5.6e-07 30.0 0.0 3.1e-06 27.7 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|292654804|ref|YP_003534701.1| - 1.5e-05 24.7 0.0 0.0013 18.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|292654804|ref|YP_003534701.1| - 0.00034 19.8 0.0 0.00049 19.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|292654804|ref|YP_003534701.1| - 0.0012 18.3 0.1 0.92 8.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|292654804|ref|YP_003534701.1| - 0.0035 17.1 0.0 0.74 9.5 0.0 2.2 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|292654804|ref|YP_003534701.1| - 0.04 14.3 0.0 14 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|292654804|ref|YP_003534701.1| - 0.05 13.3 0.5 1.6 8.4 0.5 2.4 1 1 0 1 1 1 0 AAA domain Nitroreductase PF00881.24 gi|292654805|ref|YP_003534702.1| - 1.3e-34 119.7 0.0 1.6e-34 119.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|292654805|ref|YP_003534702.1| - 3.2e-06 26.9 0.1 0.031 13.9 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase HMGL-like PF00682.19 gi|292654808|ref|YP_003534705.1| - 1.5e-64 218.1 1.5 1.5e-64 218.1 1.5 1.8 3 0 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|292654808|ref|YP_003534705.1| - 2e-31 108.7 1.2 3.9e-31 107.7 1.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|292654808|ref|YP_003534705.1| - 0.0074 15.7 0.3 0.055 12.9 0.1 2.3 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel F_bP_aldolase PF01116.20 gi|292654808|ref|YP_003534705.1| - 0.021 14.3 1.1 1.1 8.7 0.2 2.3 1 1 1 2 2 2 0 Fructose-bisphosphate aldolase class-II PSK_trans_fac PF07704.11 gi|292654808|ref|YP_003534705.1| - 1.4 9.7 5.3 75 4.2 0.0 4.2 4 0 0 4 4 4 0 Rv0623-like transcription factor DUF192 PF02643.15 gi|292654809|ref|YP_003534706.1| - 9.2e-21 73.8 0.0 1.1e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 RecA_dep_nuc PF16786.5 gi|292654810|ref|YP_003534707.1| - 0.036 14.2 1.0 0.093 12.9 1.0 1.7 1 1 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease DUF968 PF06147.11 gi|292654810|ref|YP_003534707.1| - 0.13 12.4 0.1 0.18 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF968) DUF2960 PF11173.8 gi|292654810|ref|YP_003534707.1| - 0.29 11.6 0.5 1.6 9.3 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2960) GATase PF00117.28 gi|292654811|ref|YP_003534708.1| - 2.4e-33 115.5 0.0 3e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292654811|ref|YP_003534708.1| - 4.5e-13 49.5 2.3 1.8e-11 44.2 0.4 2.9 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|292654811|ref|YP_003534708.1| - 0.0086 15.7 0.0 0.056 13.0 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.9 gi|292654812|ref|YP_003534709.1| - 2.5e-206 686.4 0.0 2.8e-206 686.2 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Nudix_N_2 PF14803.6 gi|292654813|ref|YP_003534710.1| - 0.0012 18.7 0.6 0.12 12.3 0.1 2.3 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|292654813|ref|YP_003534710.1| - 0.0018 17.8 1.7 0.42 10.2 0.2 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|292654813|ref|YP_003534710.1| - 0.0018 17.6 1.2 0.29 10.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|292654813|ref|YP_003534710.1| - 0.0023 17.6 0.6 1.3 8.8 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|292654813|ref|YP_003534710.1| - 0.0077 15.9 1.5 2.8 7.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF35_N PF12172.8 gi|292654813|ref|YP_003534710.1| - 0.042 13.7 2.5 0.31 11.0 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|292654813|ref|YP_003534710.1| - 0.046 13.5 2.5 5.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|292654813|ref|YP_003534710.1| - 0.05 13.7 0.9 6.8 6.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|292654813|ref|YP_003534710.1| - 0.054 13.4 1.5 2.7 8.0 0.1 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ADK_lid PF05191.14 gi|292654813|ref|YP_003534710.1| - 0.057 13.4 5.3 0.17 11.9 1.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.6 gi|292654813|ref|YP_003534710.1| - 0.063 13.2 0.9 4.3 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292654813|ref|YP_003534710.1| - 0.066 13.3 2.4 0.87 9.8 2.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|292654813|ref|YP_003534710.1| - 0.081 13.0 0.1 0.1 12.6 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L32p PF01783.23 gi|292654813|ref|YP_003534710.1| - 0.097 12.9 0.2 0.83 10.0 0.0 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family Ribosomal_S27 PF01599.19 gi|292654813|ref|YP_003534710.1| - 0.11 12.7 1.2 4.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|292654813|ref|YP_003534710.1| - 0.12 12.4 3.0 1.1 9.2 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|292654813|ref|YP_003534710.1| - 0.13 12.1 0.4 16 5.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-tcix PF14952.6 gi|292654813|ref|YP_003534710.1| - 0.19 11.4 3.2 1 9.0 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-NADH-PPase PF09297.11 gi|292654813|ref|YP_003534710.1| - 0.31 10.8 0.2 0.31 10.8 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF3194 PF11419.8 gi|292654814|ref|YP_003534711.1| - 2e-05 24.9 2.8 2.6e-05 24.5 2.8 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|292654815|ref|YP_003534712.1| - 4.2e-23 81.3 20.5 4.7e-23 81.2 20.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|292654815|ref|YP_003534712.1| - 9.1e-05 22.4 12.6 0.00014 21.7 12.6 1.3 1 0 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|292654815|ref|YP_003534712.1| - 0.00093 19.5 5.2 0.00093 19.5 5.2 2.3 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Sigma70_ner PF04546.13 gi|292654815|ref|YP_003534712.1| - 0.0071 16.3 12.0 0.009 15.9 1.4 2.0 1 1 1 2 2 2 1 Sigma-70, non-essential region GIT_CC PF16559.5 gi|292654815|ref|YP_003534712.1| - 0.012 15.4 2.1 0.012 15.4 2.1 2.4 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor bZIP_1 PF00170.21 gi|292654815|ref|YP_003534712.1| - 0.016 15.3 5.0 0.016 15.3 5.0 2.2 2 0 0 2 2 2 0 bZIP transcription factor DUF5082 PF16888.5 gi|292654815|ref|YP_003534712.1| - 0.02 15.1 12.0 0.026 14.8 12.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) SlyX PF04102.12 gi|292654815|ref|YP_003534712.1| - 0.023 15.3 3.5 0.023 15.3 3.5 2.3 2 1 0 2 2 2 0 SlyX XhlA PF10779.9 gi|292654815|ref|YP_003534712.1| - 0.023 14.9 1.8 0.023 14.9 1.8 2.2 2 0 0 2 2 2 0 Haemolysin XhlA TraF_2 PF13729.6 gi|292654815|ref|YP_003534712.1| - 0.026 13.9 0.2 0.026 13.9 0.2 1.9 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein RasGAP_C PF03836.15 gi|292654815|ref|YP_003534712.1| - 0.069 13.3 7.3 1.4 9.0 1.6 2.1 2 0 0 2 2 2 0 RasGAP C-terminus PCRF PF03462.18 gi|292654815|ref|YP_003534712.1| - 0.083 12.8 9.7 0.13 12.1 9.7 1.2 1 0 0 1 1 1 0 PCRF domain BRI3BP PF14965.6 gi|292654815|ref|YP_003534712.1| - 0.12 11.9 0.2 0.25 10.9 0.2 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Med28 PF11594.8 gi|292654815|ref|YP_003534712.1| - 0.14 12.2 6.5 1.9 8.6 0.5 2.1 1 1 1 2 2 2 0 Mediator complex subunit 28 DHR10 PF18595.1 gi|292654815|ref|YP_003534712.1| - 0.2 11.7 22.0 0.42 10.7 22.0 1.4 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Sec8_exocyst PF04048.14 gi|292654815|ref|YP_003534712.1| - 0.22 11.4 9.4 0.077 12.9 3.4 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DUF1664 PF07889.12 gi|292654815|ref|YP_003534712.1| - 0.26 11.4 10.4 0.39 10.8 3.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|292654815|ref|YP_003534712.1| - 0.31 11.1 21.1 7.9 6.6 21.1 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 gi|292654815|ref|YP_003534712.1| - 0.31 11.5 10.8 0.17 12.4 1.5 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prominin PF05478.11 gi|292654815|ref|YP_003534712.1| - 0.32 8.9 5.8 0.39 8.6 5.8 1.1 1 0 0 1 1 1 0 Prominin Lectin_N PF03954.14 gi|292654815|ref|YP_003534712.1| - 0.33 10.7 12.5 0.61 9.8 1.9 2.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF3584 PF12128.8 gi|292654815|ref|YP_003534712.1| - 0.34 8.4 11.7 0.43 8.0 11.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2379 PF09543.10 gi|292654815|ref|YP_003534712.1| - 0.48 10.6 6.8 0.78 9.9 2.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Lebercilin PF15619.6 gi|292654815|ref|YP_003534712.1| - 0.5 10.0 17.3 1.4 8.5 17.3 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF1826 PF08856.11 gi|292654815|ref|YP_003534712.1| - 0.58 10.0 3.1 0.79 9.6 1.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1826) DUF3450 PF11932.8 gi|292654815|ref|YP_003534712.1| - 0.6 9.4 21.1 0.19 11.0 6.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) NPV_P10 PF05531.12 gi|292654815|ref|YP_003534712.1| - 0.61 10.6 10.0 0.69 10.4 2.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.22 gi|292654815|ref|YP_003534712.1| - 0.61 10.3 12.0 1.8 8.8 1.8 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4795 PF16043.5 gi|292654815|ref|YP_003534712.1| - 0.64 9.6 15.8 1.1 8.9 15.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4407 PF14362.6 gi|292654815|ref|YP_003534712.1| - 0.79 9.0 10.3 3.9 6.8 10.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sec34 PF04136.15 gi|292654815|ref|YP_003534712.1| - 0.8 9.6 14.3 0.64 9.9 3.1 2.1 1 1 1 2 2 2 0 Sec34-like family WXG100 PF06013.12 gi|292654815|ref|YP_003534712.1| - 0.87 9.9 10.7 5.7 7.2 2.8 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG FUSC PF04632.12 gi|292654815|ref|YP_003534712.1| - 0.87 8.0 3.0 1.1 7.7 3.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Peptidase_M41 PF01434.18 gi|292654815|ref|YP_003534712.1| - 1 9.2 6.8 1.5 8.6 6.8 1.4 1 1 0 1 1 1 0 Peptidase family M41 Exonuc_VII_L PF02601.15 gi|292654815|ref|YP_003534712.1| - 1.1 8.8 7.4 1.4 8.4 7.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit ERM PF00769.19 gi|292654815|ref|YP_003534712.1| - 1.3 8.8 21.8 10 5.9 22.5 1.6 1 1 0 1 1 1 0 Ezrin/radixin/moesin family PspA_IM30 PF04012.12 gi|292654815|ref|YP_003534712.1| - 1.3 8.5 19.5 2.3 7.7 4.3 2.0 1 1 1 2 2 2 0 PspA/IM30 family DUF724 PF05266.14 gi|292654815|ref|YP_003534712.1| - 1.4 8.7 12.3 1.9 8.2 12.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PRP1_N PF06424.12 gi|292654815|ref|YP_003534712.1| - 1.8 8.9 7.2 2.8 8.3 7.2 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal DUF4200 PF13863.6 gi|292654815|ref|YP_003534712.1| - 2 8.9 17.4 0.85 10.0 6.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) YnfE PF17452.2 gi|292654815|ref|YP_003534712.1| - 2 8.8 7.9 0.28 11.5 2.9 1.9 1 1 1 2 2 2 0 Uncharacterized YnfE-like Laminin_II PF06009.12 gi|292654815|ref|YP_003534712.1| - 2 8.4 11.8 23 5.0 11.8 2.0 1 1 0 1 1 1 0 Laminin Domain II Spc24 PF08286.11 gi|292654815|ref|YP_003534712.1| - 2.1 8.6 17.7 2 8.7 4.8 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 YojJ PF10372.9 gi|292654815|ref|YP_003534712.1| - 2.1 8.5 6.7 2.8 8.1 0.9 2.4 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus ZapB PF06005.12 gi|292654815|ref|YP_003534712.1| - 2.2 8.8 19.2 0.99 9.9 6.9 2.2 2 0 0 2 2 2 0 Cell division protein ZapB FlaC_arch PF05377.11 gi|292654815|ref|YP_003534712.1| - 2.5 8.5 15.9 0.11 12.9 6.8 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|292654815|ref|YP_003534712.1| - 2.7 6.8 20.1 1.9 7.3 6.1 1.7 1 1 0 2 2 2 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|292654815|ref|YP_003534712.1| - 3.1 8.0 11.7 26 5.0 11.9 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Mem_trans PF03547.18 gi|292654815|ref|YP_003534712.1| - 3.1 6.1 3.8 3.5 5.9 3.8 1.1 1 0 0 1 1 1 0 Membrane transport protein Ax_dynein_light PF10211.9 gi|292654815|ref|YP_003534712.1| - 3.9 7.4 17.9 0.087 12.8 5.7 2.1 1 1 0 2 2 2 0 Axonemal dynein light chain DUF3053 PF11254.8 gi|292654815|ref|YP_003534712.1| - 4.5 6.8 10.1 1.6 8.3 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) Cnn_1N PF07989.11 gi|292654815|ref|YP_003534712.1| - 5.1 7.3 15.1 7.3 6.8 2.1 2.4 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 DUF948 PF06103.11 gi|292654815|ref|YP_003534712.1| - 5.5 7.3 8.8 8.4e+02 0.3 8.8 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) CorA PF01544.18 gi|292654815|ref|YP_003534712.1| - 6 6.1 9.6 20 4.4 9.8 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein ACCA PF03255.14 gi|292654815|ref|YP_003534712.1| - 6 6.7 9.4 6.8 6.6 1.7 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4618 PF15397.6 gi|292654815|ref|YP_003534712.1| - 6.4 6.1 19.2 68 2.7 19.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) GAS PF13851.6 gi|292654815|ref|YP_003534712.1| - 7.7 5.8 20.5 60 2.9 20.6 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4446 PF14584.6 gi|292654815|ref|YP_003534712.1| - 7.9 6.5 11.1 0.79 9.7 2.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) LPP PF04728.13 gi|292654815|ref|YP_003534712.1| - 8.1 6.9 11.6 6.9 7.2 1.1 2.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper LMBR1 PF04791.16 gi|292654815|ref|YP_003534712.1| - 8.5 5.2 6.7 11 4.7 6.7 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Pcc1 PF09341.10 gi|292654816|ref|YP_003534713.1| - 1.3e-12 47.7 0.3 1.4e-12 47.5 0.3 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|292654817|ref|YP_003534714.1| - 8.9e-11 41.3 5.0 1.1e-10 41.0 5.0 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|292654817|ref|YP_003534714.1| - 4.3e-05 22.8 0.3 0.003 16.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|292654817|ref|YP_003534714.1| - 0.00051 19.6 1.6 0.12 12.0 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|292654817|ref|YP_003534714.1| - 0.0009 19.2 0.4 0.00094 19.2 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|292654817|ref|YP_003534714.1| - 0.00097 18.8 0.4 0.039 13.7 1.3 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain zf-CHCC PF10276.9 gi|292654817|ref|YP_003534714.1| - 0.0046 17.0 0.1 0.0083 16.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain YacG PF03884.14 gi|292654817|ref|YP_003534714.1| - 0.0049 16.6 0.5 0.2 11.4 0.1 2.0 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG Zn_Tnp_IS1595 PF12760.7 gi|292654817|ref|YP_003534714.1| - 0.0065 16.4 4.9 0.11 12.5 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|292654817|ref|YP_003534714.1| - 0.011 15.7 1.0 0.022 14.8 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon Spt4 PF06093.13 gi|292654817|ref|YP_003534714.1| - 0.016 15.3 0.2 0.017 15.2 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Zn-ribbon_8 PF09723.10 gi|292654817|ref|YP_003534714.1| - 0.017 15.2 3.2 0.029 14.5 3.2 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|292654817|ref|YP_003534714.1| - 0.022 14.7 0.2 0.026 14.5 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPXG PF14255.6 gi|292654817|ref|YP_003534714.1| - 0.034 14.0 0.7 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|292654817|ref|YP_003534714.1| - 0.04 14.3 1.0 0.11 12.9 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar Sgf11 PF08209.11 gi|292654817|ref|YP_003534714.1| - 0.042 13.4 2.4 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Anti-TRAP PF15777.5 gi|292654817|ref|YP_003534714.1| - 0.068 13.1 0.1 0.083 12.9 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein TF_Zn_Ribbon PF08271.12 gi|292654817|ref|YP_003534714.1| - 0.072 12.6 3.6 0.21 11.1 3.7 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding DUF951 PF06107.11 gi|292654817|ref|YP_003534714.1| - 0.08 12.9 0.3 3.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF3268 PF11672.8 gi|292654817|ref|YP_003534714.1| - 0.084 13.2 0.3 0.47 10.8 0.0 1.9 2 0 0 2 2 2 0 zinc-finger-containing domain zinc_ribbon_2 PF13240.6 gi|292654817|ref|YP_003534714.1| - 0.12 12.1 6.0 4 7.3 6.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|292654817|ref|YP_003534714.1| - 0.15 12.1 1.1 0.76 9.8 1.2 1.8 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|292654817|ref|YP_003534714.1| - 0.19 11.7 2.3 0.31 11.0 2.2 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.12 gi|292654817|ref|YP_003534714.1| - 0.21 11.9 2.2 0.61 10.4 0.3 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|292654817|ref|YP_003534714.1| - 0.43 10.6 5.7 19 5.3 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|292654818|ref|YP_003534715.1| - 2.6e-21 75.5 1.0 3e-21 75.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Epimerase PF01370.21 gi|292654819|ref|YP_003534716.1| - 5.3e-13 49.0 0.0 1.2e-12 47.8 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292654819|ref|YP_003534716.1| - 5.5e-09 35.9 0.0 1.9e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|292654819|ref|YP_003534716.1| - 6.8e-09 35.9 0.0 1e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|292654819|ref|YP_003534716.1| - 3.8e-05 22.9 0.0 0.16 11.0 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain FAD_binding_3 PF01494.19 gi|292654819|ref|YP_003534716.1| - 0.0041 16.4 0.0 0.0074 15.6 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|292654819|ref|YP_003534716.1| - 0.01 15.1 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292654819|ref|YP_003534716.1| - 0.011 15.4 0.1 0.037 13.6 0.0 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|292654819|ref|YP_003534716.1| - 0.021 15.4 0.0 0.04 14.5 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|292654819|ref|YP_003534716.1| - 0.032 14.5 0.0 0.12 12.7 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_8 PF13450.6 gi|292654819|ref|YP_003534716.1| - 0.043 14.1 0.1 0.094 13.0 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|292654819|ref|YP_003534716.1| - 0.1 13.1 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Glyco_trans_4_4 PF13579.6 gi|292654819|ref|YP_003534716.1| - 3.7 8.0 10.2 0.6 10.5 4.0 2.2 1 1 0 2 2 2 0 Glycosyl transferase 4-like domain DUF2103 PF09876.9 gi|292654820|ref|YP_003534717.1| - 1.2e-39 134.2 0.1 2e-39 133.5 0.1 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF3247 PF11607.8 gi|292654820|ref|YP_003534717.1| - 0.05 13.9 1.0 0.099 12.9 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3247) DUF4064 PF13273.6 gi|292654821|ref|YP_003534718.1| - 0.13 12.6 1.5 0.31 11.3 0.3 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) 7tm_3 PF00003.22 gi|292654821|ref|YP_003534718.1| - 0.2 11.3 0.6 1.9 8.1 0.0 2.1 1 1 1 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR TruD PF01142.18 gi|292654822|ref|YP_003534719.1| - 1.8e-153 511.3 0.0 2e-153 511.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2201_N PF13203.6 gi|292654822|ref|YP_003534719.1| - 0.16 11.5 0.1 0.28 10.8 0.1 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain PTH2 PF01981.16 gi|292654823|ref|YP_003534720.1| - 1.8e-40 137.9 0.0 2e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 WEMBL PF05701.11 gi|292654823|ref|YP_003534720.1| - 0.048 12.4 0.0 0.061 12.0 0.0 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Yip1 PF04893.17 gi|292654824|ref|YP_003534721.1| - 1.3e-16 60.8 3.9 1.9e-16 60.2 3.9 1.1 1 0 0 1 1 1 1 Yip1 domain Frag1 PF10277.9 gi|292654824|ref|YP_003534721.1| - 0.024 14.2 0.2 0.55 9.7 0.1 2.1 2 0 0 2 2 2 0 Frag1/DRAM/Sfk1 family DCD PF06559.11 gi|292654825|ref|YP_003534722.1| - 1.2e-24 86.8 0.0 8.4e-13 47.8 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|292654825|ref|YP_003534722.1| - 1.1e-15 57.4 0.0 1.5e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|292654826|ref|YP_003534723.1| - 9e-50 168.5 0.0 1.3e-49 168.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|292654826|ref|YP_003534723.1| - 1.2e-06 28.5 0.0 2.1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|292654826|ref|YP_003534723.1| - 0.00019 21.7 0.1 0.00065 20.0 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|292654826|ref|YP_003534723.1| - 0.0002 21.1 0.1 0.00062 19.5 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 gi|292654826|ref|YP_003534723.1| - 0.00026 20.8 0.1 0.0013 18.6 0.0 2.2 2 0 0 2 2 1 1 MarR family Sigma70_r4 PF04545.16 gi|292654826|ref|YP_003534723.1| - 0.00032 20.2 0.6 0.0012 18.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 KorB PF08535.10 gi|292654826|ref|YP_003534723.1| - 0.00043 20.3 0.1 0.67 10.0 0.0 2.6 3 0 0 3 3 2 2 KorB domain HTH_26 PF13443.6 gi|292654826|ref|YP_003534723.1| - 0.00058 20.2 0.0 0.001 19.5 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|292654826|ref|YP_003534723.1| - 0.0015 18.5 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|292654826|ref|YP_003534723.1| - 0.0032 17.5 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|292654826|ref|YP_003534723.1| - 0.0034 17.2 0.0 0.0078 16.1 0.0 1.5 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|292654826|ref|YP_003534723.1| - 0.0037 16.8 0.0 0.0084 15.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding P22_Cro PF14549.6 gi|292654826|ref|YP_003534723.1| - 0.01 15.7 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro RepB PF07506.11 gi|292654826|ref|YP_003534723.1| - 0.014 15.5 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_28 PF13518.6 gi|292654826|ref|YP_003534723.1| - 0.017 15.3 0.0 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|292654826|ref|YP_003534723.1| - 0.035 14.2 0.4 0.22 11.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|292654826|ref|YP_003534723.1| - 0.043 13.5 0.8 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 TrbH PF07283.11 gi|292654826|ref|YP_003534723.1| - 0.058 13.6 0.0 0.43 10.8 0.0 2.1 2 0 0 2 2 2 0 Conjugal transfer protein TrbH HTH_1 PF00126.27 gi|292654826|ref|YP_003534723.1| - 0.08 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 gi|292654826|ref|YP_003534723.1| - 0.1 12.5 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|292654826|ref|YP_003534723.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|292654826|ref|YP_003534723.1| - 0.13 12.1 0.5 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_35 PF13693.6 gi|292654826|ref|YP_003534723.1| - 0.15 12.1 0.0 0.4 10.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|292654826|ref|YP_003534723.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.10 gi|292654826|ref|YP_003534723.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Cro DUF3071 PF11268.8 gi|292654826|ref|YP_003534723.1| - 0.17 11.9 0.1 0.26 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) HTH_8 PF02954.19 gi|292654826|ref|YP_003534723.1| - 0.18 11.6 1.3 0.54 10.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Methyltransf_25 PF13649.6 gi|292654827|ref|YP_003534724.1| - 1.1e-12 48.5 0.0 2.1e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292654827|ref|YP_003534724.1| - 2.7e-12 46.8 0.0 3.2e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292654827|ref|YP_003534724.1| - 1.9e-11 44.5 0.0 3.5e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292654827|ref|YP_003534724.1| - 1.4e-09 38.6 0.0 2.1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654827|ref|YP_003534724.1| - 1.7e-09 37.6 0.0 2.3e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|292654827|ref|YP_003534724.1| - 2.3e-06 27.5 0.0 3.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|292654827|ref|YP_003534724.1| - 4.7e-06 26.1 0.0 5.7e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|292654827|ref|YP_003534724.1| - 2.2e-05 24.6 0.0 3.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_19 PF04672.12 gi|292654827|ref|YP_003534724.1| - 0.0013 18.3 0.1 0.002 17.7 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl methyltransferase GCD14 PF08704.10 gi|292654827|ref|YP_003534724.1| - 0.0066 16.1 0.0 0.009 15.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|292654827|ref|YP_003534724.1| - 0.011 14.8 0.0 0.025 13.7 0.0 1.5 2 0 0 2 2 2 0 Fibrillarin Corona_nucleoca PF00937.18 gi|292654827|ref|YP_003534724.1| - 0.028 13.5 8.2 0.19 10.7 8.0 1.9 2 0 0 2 2 2 0 Coronavirus nucleocapsid protein CMAS PF02353.20 gi|292654827|ref|YP_003534724.1| - 0.029 13.6 0.0 0.041 13.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|292654827|ref|YP_003534724.1| - 0.039 13.0 0.0 0.067 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|292654827|ref|YP_003534724.1| - 0.062 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|292654827|ref|YP_003534724.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain TPMT PF05724.11 gi|292654827|ref|YP_003534724.1| - 0.2 11.3 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltr_RsmB-F PF01189.17 gi|292654827|ref|YP_003534724.1| - 0.22 11.1 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F TP2 PF01254.18 gi|292654827|ref|YP_003534724.1| - 0.79 10.3 7.3 1.4 9.5 7.3 1.4 1 0 0 1 1 1 0 Nuclear transition protein 2 Thi4 PF01946.17 gi|292654829|ref|YP_003534726.1| - 8.5e-59 198.6 0.2 5.4e-56 189.5 0.2 2.1 1 1 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|292654829|ref|YP_003534726.1| - 2.8e-10 39.8 1.5 1.9e-07 30.6 0.7 2.2 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|292654829|ref|YP_003534726.1| - 6.3e-10 39.2 1.5 3.9e-06 26.7 0.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|292654829|ref|YP_003534726.1| - 7e-10 39.0 0.2 1.9e-09 37.6 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|292654829|ref|YP_003534726.1| - 7e-10 38.7 0.3 1.7e-09 37.4 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|292654829|ref|YP_003534726.1| - 1.1e-09 38.2 0.2 1.7e-09 37.5 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292654829|ref|YP_003534726.1| - 3.2e-08 33.2 0.1 4.2e-08 32.8 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292654829|ref|YP_003534726.1| - 1.4e-07 30.6 0.0 1.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|292654829|ref|YP_003534726.1| - 4e-06 27.3 0.9 1.3e-05 25.6 0.9 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292654829|ref|YP_003534726.1| - 3.4e-05 23.2 0.1 5.5e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|292654829|ref|YP_003534726.1| - 4.4e-05 22.9 0.0 7.9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|292654829|ref|YP_003534726.1| - 0.0001 21.3 0.5 0.0082 15.0 0.2 2.2 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|292654829|ref|YP_003534726.1| - 0.0002 21.4 0.2 0.00043 20.3 0.2 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|292654829|ref|YP_003534726.1| - 0.00064 18.9 0.4 0.00098 18.3 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|292654829|ref|YP_003534726.1| - 0.0077 15.3 1.0 0.014 14.5 0.4 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|292654829|ref|YP_003534726.1| - 0.014 15.8 0.2 0.027 14.9 0.2 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|292654829|ref|YP_003534726.1| - 0.017 15.4 0.2 0.04 14.2 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|292654829|ref|YP_003534726.1| - 0.04 14.0 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase YjeF_N PF03853.15 gi|292654829|ref|YP_003534726.1| - 0.049 13.5 0.3 0.35 10.7 0.0 2.4 3 0 0 3 3 3 0 YjeF-related protein N-terminus AlaDh_PNT_C PF01262.21 gi|292654829|ref|YP_003534726.1| - 0.056 12.7 1.3 0.11 11.8 0.0 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain FMO-like PF00743.19 gi|292654829|ref|YP_003534726.1| - 0.27 9.6 0.1 0.37 9.2 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 2-oxoacid_dh PF00198.23 gi|292654830|ref|YP_003534727.1| - 3.8e-66 222.9 0.0 5e-66 222.5 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 gi|292654830|ref|YP_003534727.1| - 3.9e-29 100.7 9.4 1.8e-15 57.0 0.1 3.2 4 0 0 4 4 4 2 e3 binding domain Biotin_lipoyl PF00364.22 gi|292654830|ref|YP_003534727.1| - 9.7e-16 57.4 0.6 1.8e-15 56.5 0.6 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|292654830|ref|YP_003534727.1| - 1.6e-06 27.8 0.0 4.1e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like IF-2 PF11987.8 gi|292654830|ref|YP_003534727.1| - 0.0051 16.9 0.2 0.3 11.2 0.0 3.1 3 0 0 3 3 3 1 Translation-initiation factor 2 RnfC_N PF13375.6 gi|292654830|ref|YP_003534727.1| - 0.018 15.0 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|292654830|ref|YP_003534727.1| - 0.05 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|292654830|ref|YP_003534727.1| - 0.097 12.9 0.2 0.32 11.2 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M23 NAD_kinase PF01513.21 gi|292654831|ref|YP_003534728.1| - 2.8e-13 49.7 0.3 3.7e-13 49.3 0.3 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|292654831|ref|YP_003534728.1| - 2.7e-07 30.2 1.4 2.7e-07 30.2 1.4 2.4 3 1 0 3 3 3 1 Diacylglycerol kinase catalytic domain Transket_pyr PF02779.24 gi|292654832|ref|YP_003534729.1| - 2.8e-48 164.0 0.1 4e-48 163.4 0.1 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|292654832|ref|YP_003534729.1| - 1.2e-31 109.2 0.2 2.6e-31 108.1 0.2 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain PSK_trans_fac PF07704.11 gi|292654832|ref|YP_003534729.1| - 0.12 13.2 0.1 0.38 11.5 0.0 1.8 2 0 0 2 2 2 0 Rv0623-like transcription factor E1_dh PF00676.20 gi|292654833|ref|YP_003534730.1| - 6.2e-95 317.6 0.1 7.4e-95 317.3 0.1 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|292654833|ref|YP_003534730.1| - 7.5e-09 35.5 1.1 4.9e-08 32.9 1.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|292654833|ref|YP_003534730.1| - 2.1e-05 23.9 0.0 4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase SHOCT PF09851.9 gi|292654833|ref|YP_003534730.1| - 4.8e-05 22.9 0.5 0.00013 21.5 0.1 2.0 2 0 0 2 2 2 1 Short C-terminal domain Transketolase_N PF00456.21 gi|292654833|ref|YP_003534730.1| - 0.00012 21.2 0.1 0.00015 20.8 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DUF2680 PF10925.8 gi|292654833|ref|YP_003534730.1| - 0.02 14.9 0.1 0.049 13.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) GST_N_2 PF13409.6 gi|292654834|ref|YP_003534731.1| - 4.4e-23 81.4 0.0 8.1e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|292654834|ref|YP_003534731.1| - 5.1e-11 42.4 0.3 1.2e-10 41.2 0.3 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|292654834|ref|YP_003534731.1| - 3.4e-08 33.6 0.3 2e-07 31.1 0.2 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|292654834|ref|YP_003534731.1| - 1.4e-05 24.8 0.2 2.4e-05 24.0 0.2 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|292654834|ref|YP_003534731.1| - 1.8e-05 25.1 0.0 8.9e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 gi|292654834|ref|YP_003534731.1| - 5.1e-05 23.4 0.2 9.7e-05 22.5 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain PhoU PF01895.19 gi|292654834|ref|YP_003534731.1| - 0.087 13.3 0.3 0.26 11.8 0.3 1.9 1 1 1 2 2 2 0 PhoU domain Pup PF05639.11 gi|292654834|ref|YP_003534731.1| - 2.4 9.1 5.3 7.2 7.6 0.5 2.4 1 1 0 2 2 2 0 Pup-like protein Oxidored_molyb PF00174.19 gi|292654835|ref|YP_003534732.1| - 8.7e-17 61.3 0.0 1.4e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF4079 PF13301.6 gi|292654835|ref|YP_003534732.1| - 0.00038 20.6 1.4 0.00038 20.6 1.4 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4079) TMEM100 PF16311.5 gi|292654837|ref|YP_003534734.1| - 0.028 14.0 0.2 0.073 12.7 0.0 1.7 1 1 0 1 1 1 0 Transmembrane protein 100 Gram_pos_anchor PF00746.21 gi|292654837|ref|YP_003534734.1| - 0.1 12.5 0.1 0.1 12.5 0.1 2.4 3 0 0 3 3 3 0 LPXTG cell wall anchor motif Trp_oprn_chp PF09534.10 gi|292654837|ref|YP_003534734.1| - 0.43 10.4 15.2 0.073 12.9 4.0 2.1 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PPS_PS PF02006.16 gi|292654838|ref|YP_003534735.1| - 5.4e-71 237.8 1.7 6.6e-71 237.5 1.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase CMD PF02627.20 gi|292654838|ref|YP_003534735.1| - 0.0045 17.0 2.5 0.0066 16.5 1.2 1.9 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family GHMP_kinases_N PF00288.26 gi|292654839|ref|YP_003534736.1| - 4.8e-08 33.1 9.5 7.6e-08 32.5 4.3 2.7 2 0 0 2 2 2 2 GHMP kinases N terminal domain SHOCT PF09851.9 gi|292654840|ref|YP_003534737.1| - 2.1e-09 36.8 3.1 4e-09 35.9 3.1 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF4191 PF13829.6 gi|292654840|ref|YP_003534737.1| - 1.1e-05 24.9 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4191) DUF1707 PF08044.11 gi|292654840|ref|YP_003534737.1| - 0.00033 20.7 5.5 0.00033 20.7 5.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|292654840|ref|YP_003534737.1| - 0.0066 16.4 1.1 0.011 15.7 1.1 1.5 1 0 0 1 1 1 1 Gas vesicle protein G Spore_SspJ PF09575.10 gi|292654840|ref|YP_003534737.1| - 0.023 15.1 1.6 0.058 13.8 1.6 1.6 1 0 0 1 1 1 0 Small spore protein J (Spore_SspJ) DUF3040 PF11239.8 gi|292654840|ref|YP_003534737.1| - 0.061 13.6 0.5 0.13 12.5 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TadF PF16964.5 gi|292654840|ref|YP_003534737.1| - 0.19 11.4 0.1 0.26 11.0 0.1 1.2 1 0 0 1 1 1 0 Putative tight adherence pilin protein F tRNA-synt_2 PF00152.20 gi|292654841|ref|YP_003534738.1| - 5.7e-86 288.4 0.1 6.8e-86 288.2 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|292654841|ref|YP_003534738.1| - 6.1e-14 51.8 0.2 1.1e-13 51.0 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|292654841|ref|YP_003534738.1| - 0.016 14.7 0.1 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|292654841|ref|YP_003534738.1| - 0.037 14.1 0.1 0.13 12.4 0.1 1.9 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein DUF4013 PF13197.6 gi|292654843|ref|YP_003534740.1| - 4.7e-16 59.1 8.9 4.7e-16 59.1 8.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) PcrB PF01884.17 gi|292654844|ref|YP_003534741.1| - 3.1e-60 203.4 0.2 3.7e-60 203.2 0.2 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|292654844|ref|YP_003534741.1| - 0.097 11.5 0.3 0.33 9.7 0.1 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Mrr_cat PF04471.12 gi|292654845|ref|YP_003534742.1| - 9.4e-22 77.2 0.0 2e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|292654845|ref|YP_003534742.1| - 4e-06 26.8 0.0 7.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF2034 PF10356.9 gi|292654845|ref|YP_003534742.1| - 0.21 11.0 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2034) Topoisom_bac PF01131.20 gi|292654846|ref|YP_003534743.1| - 2.8e-121 405.4 0.0 3.8e-121 405.0 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|292654846|ref|YP_003534743.1| - 4.9e-23 80.6 4.9 1.9e-15 56.3 0.6 3.1 4 0 0 4 4 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|292654846|ref|YP_003534743.1| - 2.1e-17 63.2 0.0 3.8e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|292654846|ref|YP_003534743.1| - 6.6e-10 39.5 2.6 8.1e-10 39.2 0.7 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|292654846|ref|YP_003534743.1| - 7.2e-05 22.5 0.8 0.0075 16.1 0.0 3.3 3 1 1 4 4 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|292654846|ref|YP_003534743.1| - 0.00084 19.5 0.0 0.0026 18.0 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|292654846|ref|YP_003534743.1| - 0.0051 16.6 0.4 0.065 13.1 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|292654846|ref|YP_003534743.1| - 0.0067 16.7 0.1 0.014 15.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) IMS_HHH PF11798.8 gi|292654846|ref|YP_003534743.1| - 0.015 15.6 0.0 0.065 13.6 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif DUF1272 PF06906.11 gi|292654846|ref|YP_003534743.1| - 0.026 14.6 2.7 0.2 11.7 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) HEXIM PF15313.6 gi|292654846|ref|YP_003534743.1| - 0.11 12.7 0.1 0.27 11.4 0.1 1.6 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein zf-RING_7 PF02591.15 gi|292654846|ref|YP_003534743.1| - 0.24 11.6 1.0 23 5.3 0.1 2.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain ADK_lid PF05191.14 gi|292654846|ref|YP_003534743.1| - 0.29 11.2 2.7 1.2 9.2 0.2 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_9 PF14369.6 gi|292654846|ref|YP_003534743.1| - 0.64 10.3 7.0 9.1 6.6 0.0 3.5 3 1 0 3 3 3 0 zinc-ribbon zf-IS66 PF13005.7 gi|292654846|ref|YP_003534743.1| - 0.7 10.3 6.1 14 6.2 0.2 4.4 4 0 0 4 4 3 0 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.12 gi|292654846|ref|YP_003534743.1| - 3 7.9 12.0 0.71 9.9 4.1 2.8 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf_Rg PF17915.1 gi|292654846|ref|YP_003534743.1| - 4 6.9 7.1 2.1 7.8 0.4 2.9 3 0 0 3 3 3 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|292654846|ref|YP_003534743.1| - 6.3 7.0 9.8 5.6 7.2 0.0 3.7 3 1 1 4 4 4 0 Zinc ribbon domain GatB_N PF02934.15 gi|292654848|ref|YP_003534745.1| - 4e-101 338.0 0.0 5.5e-101 337.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|292654848|ref|YP_003534745.1| - 1.6e-42 144.9 0.0 2.9e-42 144.1 0.0 1.4 1 0 0 1 1 1 1 GatB domain DUF3100 PF11299.8 gi|292654849|ref|YP_003534746.1| - 6.8e-89 297.3 16.2 8e-89 297.1 16.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3100) GTA_holin_3TM PF11351.8 gi|292654850|ref|YP_003534747.1| - 4.8 7.8 7.0 0.25 11.9 1.5 1.7 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release Peptidase_M20 PF01546.28 gi|292654851|ref|YP_003534748.1| - 7.2e-09 35.7 1.2 1.3e-08 34.8 1.2 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292654851|ref|YP_003534748.1| - 3.6e-08 33.3 0.3 8e-08 32.2 0.3 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain TRPM_tetra PF16519.5 gi|292654852|ref|YP_003534749.1| - 0.0044 17.1 1.1 0.0057 16.7 1.1 1.1 1 0 0 1 1 1 1 Tetramerisation domain of TRPM SOAR PF16533.5 gi|292654852|ref|YP_003534749.1| - 0.011 15.7 0.3 0.016 15.1 0.3 1.3 1 0 0 1 1 1 0 STIM1 Orai1-activating region SlyX PF04102.12 gi|292654852|ref|YP_003534749.1| - 0.012 16.2 6.6 0.026 15.1 6.4 1.9 1 1 0 1 1 1 0 SlyX ZapB PF06005.12 gi|292654852|ref|YP_003534749.1| - 0.012 16.0 1.1 0.015 15.8 1.1 1.3 1 0 0 1 1 1 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|292654852|ref|YP_003534749.1| - 0.013 15.6 2.0 0.017 15.2 2.0 1.2 1 0 0 1 1 1 0 bZIP transcription factor Snapin_Pallidin PF14712.6 gi|292654852|ref|YP_003534749.1| - 0.024 15.1 0.6 0.03 14.7 0.6 1.2 1 0 0 1 1 1 0 Snapin/Pallidin NPV_P10 PF05531.12 gi|292654852|ref|YP_003534749.1| - 0.025 15.0 0.7 0.035 14.5 0.7 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|292654852|ref|YP_003534749.1| - 0.046 14.1 1.3 0.062 13.7 1.3 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) LPP PF04728.13 gi|292654852|ref|YP_003534749.1| - 0.14 12.5 0.2 0.14 12.5 0.2 2.3 2 1 0 2 2 2 0 Lipoprotein leucine-zipper GOLGA2L5 PF15070.6 gi|292654852|ref|YP_003534749.1| - 0.21 10.2 4.0 0.23 10.1 4.0 1.0 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 CCDC53 PF10152.9 gi|292654852|ref|YP_003534749.1| - 0.41 11.1 5.4 0.49 10.8 5.4 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Glypican PF01153.19 gi|292654852|ref|YP_003534749.1| - 0.73 8.6 2.3 0.87 8.3 2.3 1.0 1 0 0 1 1 1 0 Glypican Spc24 PF08286.11 gi|292654852|ref|YP_003534749.1| - 0.74 10.1 3.0 0.84 9.9 3.0 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF4407 PF14362.6 gi|292654852|ref|YP_003534749.1| - 1.5 8.1 6.6 1.6 8.0 6.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CLZ PF16526.5 gi|292654852|ref|YP_003534749.1| - 4.8 7.6 7.4 0.17 12.3 1.1 1.8 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ABC_tran_CTD PF16326.5 gi|292654852|ref|YP_003534749.1| - 7 7.0 9.2 0.14 12.4 1.4 1.9 2 0 0 2 2 2 0 ABC transporter C-terminal domain SMC_N PF02463.19 gi|292654853|ref|YP_003534750.1| - 1.6e-55 188.0 27.1 8.9e-55 185.5 27.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|292654853|ref|YP_003534750.1| - 3.2e-28 98.4 0.0 8.2e-28 97.1 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.6 gi|292654853|ref|YP_003534750.1| - 2e-12 46.6 84.2 1.1e-05 24.4 8.5 5.6 3 2 3 6 6 6 5 AAA domain Spc7 PF08317.11 gi|292654853|ref|YP_003534750.1| - 3.6e-12 45.8 121.1 0.00097 18.1 17.6 7.1 2 2 4 6 6 6 5 Spc7 kinetochore protein AAA_21 PF13304.6 gi|292654853|ref|YP_003534750.1| - 7.6e-11 42.4 6.9 2.9e-06 27.3 5.0 4.6 3 2 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system APG6_N PF17675.1 gi|292654853|ref|YP_003534750.1| - 1.2e-08 35.5 158.4 0.0043 17.6 10.9 9.7 2 2 6 9 9 9 4 Apg6 coiled-coil region ATG16 PF08614.11 gi|292654853|ref|YP_003534750.1| - 3.6e-07 30.6 134.1 1.2e-05 25.6 17.8 8.0 2 2 5 7 7 6 3 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|292654853|ref|YP_003534750.1| - 5.4e-07 29.7 73.8 0.00079 19.5 2.4 9.7 3 2 8 11 11 11 5 Protein of unknown function (DUF1664) DUF724 PF05266.14 gi|292654853|ref|YP_003534750.1| - 7e-07 29.3 96.9 0.0047 16.8 9.8 8.5 2 2 4 8 8 8 6 Protein of unknown function (DUF724) MscS_porin PF12795.7 gi|292654853|ref|YP_003534750.1| - 1.5e-06 27.9 95.8 0.00064 19.3 12.1 6.1 3 2 3 6 6 6 4 Mechanosensitive ion channel porin domain Lebercilin PF15619.6 gi|292654853|ref|YP_003534750.1| - 7.7e-06 25.7 12.0 7.7e-06 25.7 12.0 6.5 2 2 2 5 5 5 1 Ciliary protein causing Leber congenital amaurosis disease BST2 PF16716.5 gi|292654853|ref|YP_003534750.1| - 2e-05 25.1 61.8 0.0068 17.0 3.2 9.1 4 4 5 9 9 9 3 Bone marrow stromal antigen 2 IFT57 PF10498.9 gi|292654853|ref|YP_003534750.1| - 3.9e-05 22.8 6.2 3.9e-05 22.8 6.2 5.1 2 2 2 4 4 4 2 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|292654853|ref|YP_003534750.1| - 4.4e-05 23.3 83.5 0.00012 21.9 13.3 8.0 2 2 6 8 8 8 3 Domain of unknown function (DUF4201) EzrA PF06160.12 gi|292654853|ref|YP_003534750.1| - 4.6e-05 21.8 99.5 0.0026 16.0 11.2 4.7 2 2 2 4 4 4 3 Septation ring formation regulator, EzrA AAA_29 PF13555.6 gi|292654853|ref|YP_003534750.1| - 5.3e-05 22.9 0.0 0.00013 21.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|292654853|ref|YP_003534750.1| - 6.7e-05 22.3 98.9 0.00051 19.4 3.8 7.8 2 2 5 7 7 7 6 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|292654853|ref|YP_003534750.1| - 0.00012 22.1 118.1 0.0025 17.9 14.3 9.2 4 4 4 8 8 8 4 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.9 gi|292654853|ref|YP_003534750.1| - 0.00014 21.9 132.7 0.057 13.5 17.0 8.3 3 2 5 8 8 8 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|292654853|ref|YP_003534750.1| - 0.00024 20.3 85.0 0.027 13.6 9.1 6.6 2 2 7 9 9 9 6 Vacuolar sorting 38 and autophagy-related subunit 14 ABC_tran_CTD PF16326.5 gi|292654853|ref|YP_003534750.1| - 0.00039 20.6 5.0 0.00039 20.6 5.0 13.1 3 3 11 15 15 13 5 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|292654853|ref|YP_003534750.1| - 0.00051 20.2 58.4 0.00093 19.4 3.7 7.1 2 2 4 8 8 8 3 Fibrinogen alpha/beta chain family ADIP PF11559.8 gi|292654853|ref|YP_003534750.1| - 0.0007 19.7 90.1 0.17 12.0 7.0 9.4 3 2 7 10 10 10 4 Afadin- and alpha -actinin-Binding WEMBL PF05701.11 gi|292654853|ref|YP_003534750.1| - 0.00073 18.4 6.0 0.00073 18.4 6.0 4.5 2 1 1 4 4 3 1 Weak chloroplast movement under blue light Laminin_II PF06009.12 gi|292654853|ref|YP_003534750.1| - 0.0011 19.0 69.8 0.042 13.8 1.6 8.8 4 2 7 11 11 11 3 Laminin Domain II KASH_CCD PF14662.6 gi|292654853|ref|YP_003534750.1| - 0.0011 18.8 12.4 0.0011 18.8 12.4 7.0 2 2 4 7 7 6 1 Coiled-coil region of CCDC155 or KASH ERM PF00769.19 gi|292654853|ref|YP_003534750.1| - 0.0012 18.7 15.7 0.0012 18.7 15.7 6.1 2 2 2 6 6 6 1 Ezrin/radixin/moesin family AAA_23 PF13476.6 gi|292654853|ref|YP_003534750.1| - 0.0013 19.3 107.3 0.85 10.1 49.5 7.5 2 2 1 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|292654853|ref|YP_003534750.1| - 0.0019 18.0 41.8 0.034 13.8 21.3 4.8 2 2 0 2 2 2 1 AAA ATPase domain Seryl_tRNA_N PF02403.22 gi|292654853|ref|YP_003534750.1| - 0.0027 17.9 110.2 0.028 14.6 11.1 11.4 2 2 9 11 11 11 4 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.6 gi|292654853|ref|YP_003534750.1| - 0.0044 17.4 7.9 0.0044 17.4 7.9 10.0 2 2 8 10 10 10 3 Domain of unknown function (DUF4200) Fez1 PF06818.15 gi|292654853|ref|YP_003534750.1| - 0.0045 17.5 105.3 0.03 14.8 12.4 6.8 2 2 3 5 5 4 2 Fez1 KELK PF15796.5 gi|292654853|ref|YP_003534750.1| - 0.005 17.3 8.8 0.005 17.3 8.8 10.1 4 2 6 11 11 9 1 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF5082 PF16888.5 gi|292654853|ref|YP_003534750.1| - 0.0071 16.6 8.6 0.0071 16.6 8.6 10.3 4 3 6 10 10 10 3 Domain of unknown function (DUF5082) DUF4407 PF14362.6 gi|292654853|ref|YP_003534750.1| - 0.0071 15.7 100.5 0.01 15.2 11.7 7.0 2 2 6 8 8 8 2 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|292654853|ref|YP_003534750.1| - 0.0075 16.3 34.9 0.51 10.4 4.0 7.4 4 2 2 7 7 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_VII_L PF02601.15 gi|292654853|ref|YP_003534750.1| - 0.013 15.1 58.9 0.13 11.8 3.4 5.9 2 2 1 3 3 2 0 Exonuclease VII, large subunit NPV_P10 PF05531.12 gi|292654853|ref|YP_003534750.1| - 0.017 15.6 65.7 0.027 14.9 4.9 11.2 5 3 6 11 11 11 0 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|292654853|ref|YP_003534750.1| - 0.019 15.1 119.3 0.038 14.1 16.0 7.6 2 2 5 7 7 7 0 Uncharacterised protein family (UPF0242) N-terminus Snapin_Pallidin PF14712.6 gi|292654853|ref|YP_003534750.1| - 0.022 15.2 0.4 0.022 15.2 0.4 9.7 5 3 8 13 13 11 0 Snapin/Pallidin Filament PF00038.21 gi|292654853|ref|YP_003534750.1| - 0.029 14.0 115.0 0.3 10.6 45.1 6.6 2 2 3 5 5 4 0 Intermediate filament protein TMPIT PF07851.13 gi|292654853|ref|YP_003534750.1| - 0.041 13.1 60.0 0.2 10.9 3.1 6.8 2 2 3 7 7 7 0 TMPIT-like protein FlaC_arch PF05377.11 gi|292654853|ref|YP_003534750.1| - 0.2 12.1 88.2 0.22 12.0 0.2 13.8 10 4 5 15 15 14 0 Flagella accessory protein C (FlaC) Spectrin PF00435.21 gi|292654853|ref|YP_003534750.1| - 0.22 12.0 84.5 0.016 15.7 7.8 8.3 5 2 2 8 8 8 0 Spectrin repeat DUF3584 PF12128.8 gi|292654853|ref|YP_003534750.1| - 0.36 8.3 119.1 0.012 13.2 15.9 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) FPP PF05911.11 gi|292654853|ref|YP_003534750.1| - 0.44 8.7 94.4 0.031 12.5 8.5 5.6 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil ApoO PF09769.9 gi|292654853|ref|YP_003534750.1| - 0.73 9.8 8.4 4.6 7.2 0.0 5.5 6 2 0 6 6 5 0 Apolipoprotein O HsbA PF12296.8 gi|292654853|ref|YP_003534750.1| - 1.1 9.7 7.5 1.6 9.1 0.4 4.6 5 2 0 5 5 4 0 Hydrophobic surface binding protein A HOOK PF05622.12 gi|292654853|ref|YP_003534750.1| - 1.1 7.3 119.8 0.15 10.2 14.0 6.8 2 2 5 7 7 7 0 HOOK protein FliD_N PF02465.18 gi|292654853|ref|YP_003534750.1| - 3.3 8.5 28.8 8.8 7.1 2.4 8.5 2 2 4 6 6 5 0 Flagellar hook-associated protein 2 N-terminus T3SSipB PF16535.5 gi|292654853|ref|YP_003534750.1| - 7.6 7.0 74.3 0.046 14.2 1.9 8.1 3 3 4 8 8 8 0 Type III cell invasion protein SipB CEP63 PF17045.5 gi|292654853|ref|YP_003534750.1| - 9 6.1 95.8 0.013 15.4 10.4 5.3 2 2 1 4 4 3 0 Centrosomal protein of 63 kDa SMC_ScpA PF02616.14 gi|292654854|ref|YP_003534751.1| - 1.3e-14 54.7 0.0 6.9e-10 39.2 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Ndc1_Nup PF09531.10 gi|292654855|ref|YP_003534752.1| - 1.2 7.7 5.1 1.5 7.4 5.1 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup PNP_UDP_1 PF01048.20 gi|292654856|ref|YP_003534753.1| - 2.4e-45 154.6 0.0 2.7e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Extensin-like_C PF06904.12 gi|292654856|ref|YP_003534753.1| - 0.079 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Extensin-like protein C-terminus Mem_trans PF03547.18 gi|292654857|ref|YP_003534754.1| - 2e-19 69.2 16.0 9e-11 40.8 0.1 2.1 2 0 0 2 2 2 2 Membrane transport protein Pribosyltran PF00156.27 gi|292654858|ref|YP_003534755.1| - 5.8e-17 61.7 0.0 8.4e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|292654858|ref|YP_003534755.1| - 0.021 14.3 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Zn-ribbon_8 PF09723.10 gi|292654859|ref|YP_003534756.1| - 0.019 15.1 0.6 0.029 14.5 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain PhzC-PhzF PF02567.16 gi|292654860|ref|YP_003534757.1| - 5.7e-65 219.6 0.1 6.5e-65 219.4 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein PKS_DE PF18369.1 gi|292654860|ref|YP_003534757.1| - 0.53 10.9 2.9 4.7 7.9 0.7 2.9 2 0 0 2 2 2 0 Polyketide synthase dimerisation element domain PAC2 PF09754.9 gi|292654861|ref|YP_003534758.1| - 5.2e-50 170.4 0.2 6.2e-50 170.2 0.2 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.6 gi|292654861|ref|YP_003534758.1| - 0.098 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding GAT PF03127.14 gi|292654861|ref|YP_003534758.1| - 0.26 11.6 1.4 0.54 10.6 1.4 1.5 1 0 0 1 1 1 0 GAT domain Nop10p PF04135.12 gi|292654862|ref|YP_003534759.1| - 2.9e-21 75.2 1.5 3.2e-21 75.1 1.5 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.12 gi|292654863|ref|YP_003534760.1| - 7e-25 87.4 0.0 1.5e-24 86.3 0.0 1.5 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|292654863|ref|YP_003534760.1| - 7.2e-13 48.7 1.9 1.9e-12 47.3 0.7 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Linocin_M18 PF04454.12 gi|292654863|ref|YP_003534760.1| - 0.047 13.0 2.3 0.17 11.2 0.1 2.6 3 0 0 3 3 3 0 Encapsulating protein for peroxidase DUF1494 PF07379.11 gi|292654863|ref|YP_003534760.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1494) Ribosomal_S27e PF01667.17 gi|292654864|ref|YP_003534761.1| - 2.2e-19 68.9 1.1 2.4e-19 68.8 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Prok-RING_1 PF14446.6 gi|292654864|ref|YP_003534761.1| - 0.06 13.3 1.7 0.095 12.6 1.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|292654864|ref|YP_003534761.1| - 0.068 13.3 1.6 0.07 13.3 0.5 1.5 2 0 0 2 2 2 0 Zinc ribbon domain DUF1586 PF07625.11 gi|292654864|ref|YP_003534761.1| - 0.1 12.6 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1586) eIF-5_eIF-2B PF01873.17 gi|292654864|ref|YP_003534761.1| - 0.19 11.6 1.6 0.24 11.3 1.6 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Ribosomal_L44 PF00935.19 gi|292654865|ref|YP_003534762.1| - 3.2e-24 85.2 2.9 4.1e-24 84.8 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|292654865|ref|YP_003534762.1| - 0.0093 15.3 1.7 3.1 7.3 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292654865|ref|YP_003534762.1| - 0.02 14.4 0.9 4.8 6.8 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|292654865|ref|YP_003534762.1| - 0.06 13.3 3.2 6.2 6.8 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Siva PF05458.12 gi|292654865|ref|YP_003534762.1| - 0.063 13.0 0.1 0.073 12.8 0.1 1.1 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn-ribbon_8 PF09723.10 gi|292654865|ref|YP_003534762.1| - 0.07 13.3 1.0 10 6.3 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf_Rg PF17915.1 gi|292654865|ref|YP_003534762.1| - 0.12 11.8 0.7 0.16 11.4 0.1 1.6 2 0 0 2 2 2 0 Reverse gyrase zinc finger zinc_ribbon_2 PF13240.6 gi|292654865|ref|YP_003534762.1| - 0.4 10.5 5.8 3.4 7.5 1.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.24 gi|292654865|ref|YP_003534762.1| - 0.54 10.5 7.6 5.9 7.1 2.6 2.1 2 0 0 2 2 2 0 B-box zinc finger zf-Mss51 PF13824.6 gi|292654865|ref|YP_003534762.1| - 0.54 10.4 6.1 1.1 9.4 6.2 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2298 PF10060.9 gi|292654867|ref|YP_003534764.1| - 6.3e-143 477.1 33.7 9.9e-143 476.4 33.7 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.26 gi|292654868|ref|YP_003534765.1| - 5.6e-10 39.3 0.4 1.5e-09 37.9 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|292654869|ref|YP_003534766.1| - 7.8e-18 64.8 3.5 1.1e-17 64.4 3.5 1.2 1 0 0 1 1 1 1 GtrA-like protein Rieske PF00355.26 gi|292654870|ref|YP_003534767.1| - 1.2e-05 25.2 0.1 2.2e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain DUF2318 PF10080.9 gi|292654870|ref|YP_003534767.1| - 0.13 12.4 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Aminotran_4 PF01063.19 gi|292654871|ref|YP_003534768.1| - 6.4e-61 206.1 0.0 7.5e-61 205.8 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Lsm_C PF14894.6 gi|292654871|ref|YP_003534768.1| - 0.18 11.6 0.0 0.4 10.5 0.0 1.5 1 0 0 1 1 1 0 Lsm C-terminal GATase PF00117.28 gi|292654872|ref|YP_003534769.1| - 2e-36 125.6 0.0 9.4e-35 120.1 0.0 2.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292654872|ref|YP_003534769.1| - 0.00016 21.5 3.4 0.0069 16.2 3.4 2.7 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|292654873|ref|YP_003534770.1| - 3.8e-100 334.7 0.0 5.2e-100 334.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|292654873|ref|YP_003534770.1| - 4.1e-07 30.3 0.0 8.4e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.6 gi|292654874|ref|YP_003534771.1| - 6.2e-10 39.5 0.2 1.2e-09 38.6 0.2 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|292654874|ref|YP_003534771.1| - 0.0016 18.7 0.0 0.024 14.9 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|292654874|ref|YP_003534771.1| - 0.0017 18.6 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|292654874|ref|YP_003534771.1| - 0.056 13.3 0.0 0.19 11.6 0.0 1.7 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda SDH_C PF18317.1 gi|292654875|ref|YP_003534772.1| - 1e-12 47.6 0.8 2.1e-12 46.6 0.8 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|292654875|ref|YP_003534772.1| - 1.6e-08 34.7 0.1 2.2e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 gi|292654875|ref|YP_003534772.1| - 1.3e-05 24.5 4.4 1.5e-05 24.2 4.4 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|292654875|ref|YP_003534772.1| - 0.00036 19.9 0.4 0.00038 19.8 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain IlvN PF07991.12 gi|292654875|ref|YP_003534772.1| - 0.00084 18.9 0.2 0.0011 18.5 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|292654875|ref|YP_003534772.1| - 0.0013 18.0 0.6 0.0015 17.8 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|292654875|ref|YP_003534772.1| - 0.0029 17.9 0.4 0.0048 17.1 0.4 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GIDA PF01134.22 gi|292654875|ref|YP_003534772.1| - 0.0035 16.5 4.8 0.004 16.3 4.8 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A adh_short PF00106.25 gi|292654875|ref|YP_003534772.1| - 0.0048 16.4 3.1 0.009 15.5 3.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|292654875|ref|YP_003534772.1| - 0.0089 16.2 0.4 0.017 15.3 0.4 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|292654875|ref|YP_003534772.1| - 0.012 16.2 1.0 0.019 15.5 1.0 1.3 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|292654875|ref|YP_003534772.1| - 0.015 15.8 0.1 0.025 15.0 0.1 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|292654875|ref|YP_003534772.1| - 0.019 15.0 1.5 0.026 14.6 1.5 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|292654875|ref|YP_003534772.1| - 0.019 14.6 1.4 0.032 13.9 1.4 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|292654875|ref|YP_003534772.1| - 0.021 14.2 0.2 0.029 13.7 0.2 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|292654875|ref|YP_003534772.1| - 0.026 13.8 0.3 0.03 13.6 0.3 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|292654875|ref|YP_003534772.1| - 0.029 14.2 1.0 0.038 13.9 1.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Zea_mays_MuDR PF05928.11 gi|292654875|ref|YP_003534772.1| - 0.048 13.3 4.0 0.073 12.7 4.0 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) NAD_binding_8 PF13450.6 gi|292654875|ref|YP_003534772.1| - 0.052 13.8 1.9 0.097 12.9 1.9 1.4 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|292654875|ref|YP_003534772.1| - 0.3 11.7 1.4 0.52 10.9 1.4 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292654875|ref|YP_003534772.1| - 0.4 9.3 4.5 0.5 9.0 4.5 1.1 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.21 gi|292654875|ref|YP_003534772.1| - 1.1 8.6 3.3 1.5 8.1 2.6 1.5 2 0 0 2 2 2 0 ThiF family FAD_oxidored PF12831.7 gi|292654875|ref|YP_003534772.1| - 2.6 7.3 7.2 3.6 6.8 7.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Shikimate_dh_N PF08501.11 gi|292654876|ref|YP_003534773.1| - 1.4e-27 95.8 0.0 1.9e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Na_Ca_ex PF01699.24 gi|292654877|ref|YP_003534774.1| - 2.4e-45 154.2 36.0 1.1e-26 93.6 11.0 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ATP-synt_J PF04911.12 gi|292654877|ref|YP_003534774.1| - 0.61 9.7 0.0 0.61 9.7 0.0 1.9 2 0 0 2 2 2 0 ATP synthase j chain Na_Ca_ex PF01699.24 gi|292654878|ref|YP_003534775.1| - 3.1e-16 59.7 31.7 1.3e-09 38.2 8.6 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein tRNA_deacylase PF04414.12 gi|292654879|ref|YP_003534776.1| - 1.3e-61 207.8 0.0 1.6e-61 207.4 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DNA_Packaging PF11053.8 gi|292654879|ref|YP_003534776.1| - 0.034 14.0 0.1 0.077 12.8 0.0 1.6 2 0 0 2 2 2 0 Terminase DNA packaging enzyme Tubulin PF00091.25 gi|292654880|ref|YP_003534777.1| - 4.1e-42 144.6 0.8 6.2e-42 144.0 0.8 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|292654880|ref|YP_003534777.1| - 1.5e-36 124.5 1.6 1.5e-36 124.5 1.6 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|292654880|ref|YP_003534777.1| - 0.0051 16.7 3.5 0.0056 16.6 0.1 2.4 2 1 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|292654880|ref|YP_003534777.1| - 0.018 14.2 8.2 0.036 13.2 2.0 2.7 1 1 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|292654881|ref|YP_003534778.1| - 2e-05 24.4 0.1 2.5e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|292654882|ref|YP_003534779.1| - 2.6e-21 75.3 0.0 4.3e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|292654882|ref|YP_003534779.1| - 8.2e-08 31.9 0.2 8.2e-08 31.9 0.2 2.0 3 0 0 3 3 3 1 KOW motif NusG PF02357.19 gi|292654882|ref|YP_003534779.1| - 0.054 14.0 0.0 0.22 12.1 0.0 2.0 1 1 0 1 1 1 0 Transcription termination factor nusG Glyco_hydro_65C PF03633.15 gi|292654882|ref|YP_003534779.1| - 0.054 13.4 0.5 0.097 12.6 0.5 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain HTH_15 PF12324.8 gi|292654882|ref|YP_003534779.1| - 0.065 13.2 0.6 2.9 7.9 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase DUF4157 PF13699.6 gi|292654883|ref|YP_003534780.1| - 0.0032 17.7 0.4 0.0046 17.1 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) FYVE PF01363.21 gi|292654883|ref|YP_003534780.1| - 0.028 14.5 0.2 0.032 14.4 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger PHP_C PF13263.6 gi|292654884|ref|YP_003534781.1| - 2.7e-19 68.7 0.2 6.1e-19 67.5 0.2 1.7 1 0 0 1 1 1 1 PHP-associated YdjM PF04307.14 gi|292654885|ref|YP_003534782.1| - 1.8e-11 43.6 3.7 2e-10 40.3 3.7 2.1 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|292654885|ref|YP_003534782.1| - 0.0033 17.4 0.3 0.0061 16.6 0.3 1.4 1 1 0 1 1 1 1 Zinc dependent phospholipase C CinA PF02464.17 gi|292654886|ref|YP_003534783.1| - 5.2e-55 185.3 0.1 6.4e-55 185.0 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein DcrB PF08786.11 gi|292654886|ref|YP_003534783.1| - 0.18 11.9 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 DcrB ArsA_ATPase PF02374.15 gi|292654887|ref|YP_003534784.1| - 2.8e-75 253.3 0.0 1.4e-51 175.5 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|292654887|ref|YP_003534784.1| - 1.8e-07 31.3 0.0 2.7e-07 30.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|292654887|ref|YP_003534784.1| - 1.2e-06 28.6 0.0 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|292654887|ref|YP_003534784.1| - 0.00013 21.6 2.5 0.0027 17.2 0.0 2.9 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 gi|292654887|ref|YP_003534784.1| - 0.0065 15.9 0.0 0.014 14.8 0.0 1.5 2 0 0 2 2 2 1 PhoH-like protein SRP54 PF00448.22 gi|292654887|ref|YP_003534784.1| - 0.0074 15.9 0.2 0.7 9.5 0.4 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|292654887|ref|YP_003534784.1| - 0.009 15.6 1.0 0.11 12.0 0.1 2.7 3 0 0 3 3 3 1 AAA domain Fer4_NifH PF00142.18 gi|292654887|ref|YP_003534784.1| - 0.025 14.0 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|292654887|ref|YP_003534784.1| - 0.048 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Zeta_toxin PF06414.12 gi|292654887|ref|YP_003534784.1| - 0.061 12.6 0.1 0.15 11.3 0.1 1.7 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|292654887|ref|YP_003534784.1| - 0.11 11.8 0.0 0.27 10.5 0.0 1.6 2 0 0 2 2 2 0 KaiC adh_short PF00106.25 gi|292654888|ref|YP_003534785.1| - 3.4e-51 173.5 0.0 4.2e-51 173.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292654888|ref|YP_003534785.1| - 1.3e-40 139.4 0.0 1.8e-40 139.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|292654888|ref|YP_003534785.1| - 3.3e-11 43.4 0.0 4.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|292654888|ref|YP_003534785.1| - 5.9e-07 29.1 0.0 1.6e-06 27.7 0.0 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|292654888|ref|YP_003534785.1| - 3.6e-06 26.6 0.0 1.2e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|292654888|ref|YP_003534785.1| - 0.00072 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Endonuclease_5 PF04493.14 gi|292654889|ref|YP_003534786.1| - 9.3e-52 175.6 0.0 1.2e-51 175.2 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V Rhomboid PF01694.22 gi|292654890|ref|YP_003534787.1| - 4.2e-32 111.2 17.2 4.2e-32 111.2 17.2 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|292654890|ref|YP_003534787.1| - 1.5e-12 47.5 6.3 2e-12 47.0 6.3 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|292654890|ref|YP_003534787.1| - 1.8e-05 25.2 1.4 1.8e-05 25.2 1.4 2.1 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|292654890|ref|YP_003534787.1| - 0.001 18.9 4.0 0.0015 18.4 4.0 1.2 1 0 0 1 1 1 1 HIT zinc finger C1_2 PF03107.16 gi|292654890|ref|YP_003534787.1| - 0.21 11.9 3.5 0.34 11.2 3.5 1.3 1 0 0 1 1 1 0 C1 domain zf-MYND PF01753.18 gi|292654890|ref|YP_003534787.1| - 0.28 11.3 4.3 0.43 10.7 4.3 1.2 1 0 0 1 1 1 0 MYND finger DUF4407 PF14362.6 gi|292654890|ref|YP_003534787.1| - 4.2 6.6 4.4 7.9 5.7 4.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) zf-C2H2_4 PF13894.6 gi|292654890|ref|YP_003534787.1| - 4.3 8.4 6.5 2.8 9.0 2.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Pyrophosphatase PF00719.19 gi|292654892|ref|YP_003534789.1| - 5.3e-53 179.1 1.7 6e-53 178.9 1.7 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.14 gi|292654893|ref|YP_003534790.1| - 1.8e-17 63.0 0.3 2.4e-17 62.6 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|292654893|ref|YP_003534790.1| - 7.1e-05 23.2 0.0 0.00014 22.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|292654893|ref|YP_003534790.1| - 0.0082 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|292654893|ref|YP_003534790.1| - 0.011 15.7 0.1 0.019 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix RTP PF02334.16 gi|292654893|ref|YP_003534790.1| - 0.039 14.6 0.1 0.06 14.0 0.1 1.4 1 1 0 1 1 1 0 Replication terminator protein FUR PF01475.19 gi|292654893|ref|YP_003534790.1| - 0.057 13.6 0.0 0.079 13.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family RVT_3 PF13456.6 gi|292654895|ref|YP_003534792.1| - 5e-26 90.9 0.0 6.5e-26 90.6 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|292654895|ref|YP_003534792.1| - 3e-14 53.4 0.0 5.4e-14 52.6 0.0 1.4 1 1 0 1 1 1 1 RNase H TFIIB PF00382.19 gi|292654896|ref|YP_003534793.1| - 1.7e-45 152.9 2.2 1.7e-24 85.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292654896|ref|YP_003534793.1| - 0.0078 15.7 0.2 0.017 14.6 0.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|292654896|ref|YP_003534793.1| - 0.015 15.4 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|292654896|ref|YP_003534793.1| - 0.069 12.7 3.3 0.22 11.1 0.1 3.3 3 1 1 4 4 4 0 Sigma-70, region 4 HARE-HTH PF05066.13 gi|292654896|ref|YP_003534793.1| - 0.091 13.2 0.0 1.8 9.0 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Cyclin_N PF00134.23 gi|292654896|ref|YP_003534793.1| - 0.095 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Cyclin, N-terminal domain HTH_3 PF01381.22 gi|292654896|ref|YP_003534793.1| - 0.12 12.5 0.3 4.4 7.5 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix TrmB PF01978.19 gi|292654896|ref|YP_003534793.1| - 0.66 9.9 2.5 6.4 6.8 0.1 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Nre_N PF04894.12 gi|292654897|ref|YP_003534794.1| - 7.3e-98 327.7 0.0 8.8e-98 327.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|292654897|ref|YP_003534794.1| - 3.3e-37 126.7 0.0 5.4e-37 126.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF302 PF03625.14 gi|292654899|ref|YP_003534796.1| - 4.3e-15 55.3 0.0 6.4e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 CPBP PF02517.16 gi|292654900|ref|YP_003534797.1| - 5e-07 30.0 1.8 1.3e-06 28.7 0.2 2.2 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease UCR_Fe-S_N PF10399.9 gi|292654900|ref|YP_003534797.1| - 0.18 11.2 1.3 0.51 9.7 0.6 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Virul_fac_BrkB PF03631.15 gi|292654902|ref|YP_003534799.1| - 0.0019 17.8 4.0 0.0019 17.8 4.0 1.6 1 1 1 2 2 2 1 Virulence factor BrkB DUF4203 PF13886.6 gi|292654902|ref|YP_003534799.1| - 0.11 12.2 12.1 0.31 10.7 12.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) Mut7-C PF01927.16 gi|292654903|ref|YP_003534800.1| - 8.7e-42 142.7 0.0 1.1e-41 142.4 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|292654903|ref|YP_003534800.1| - 0.19 11.5 0.0 0.91 9.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) DNA_pol_B_thumb PF14791.6 gi|292654904|ref|YP_003534801.1| - 1.2e-20 73.4 0.0 3.3e-20 72.0 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|292654904|ref|YP_003534801.1| - 1.8e-20 73.1 3.1 3.6e-17 62.5 0.6 3.5 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|292654904|ref|YP_003534801.1| - 7.2e-16 58.5 1.8 1.6e-11 44.6 0.2 3.2 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|292654904|ref|YP_003534801.1| - 2.2e-08 34.6 0.0 4.5e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|292654904|ref|YP_003534801.1| - 8.2e-07 29.0 0.8 0.00064 19.8 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|292654904|ref|YP_003534801.1| - 0.00015 21.5 0.1 0.0007 19.4 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|292654904|ref|YP_003534801.1| - 0.0013 18.9 0.1 0.34 11.2 0.0 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 gi|292654904|ref|YP_003534801.1| - 0.0063 16.3 0.1 0.0063 16.3 0.1 3.1 4 0 0 4 4 4 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|292654904|ref|YP_003534801.1| - 0.0078 16.4 0.1 0.039 14.2 0.0 2.2 3 0 0 3 3 3 1 DNA polymerase beta palm DUF4331 PF14224.6 gi|292654905|ref|YP_003534802.1| - 0.046 12.9 0.1 0.046 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) Phosphodiest PF01663.22 gi|292654906|ref|YP_003534803.1| - 4.8e-60 204.0 0.4 5.7e-60 203.8 0.4 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|292654906|ref|YP_003534803.1| - 0.031 13.7 2.0 0.18 11.2 0.4 2.3 2 0 0 2 2 2 0 Sulfatase DUF2063 PF09836.9 gi|292654906|ref|YP_003534803.1| - 0.16 12.2 0.1 0.38 11.0 0.1 1.6 1 0 0 1 1 1 0 Putative DNA-binding domain GCS2 PF04107.13 gi|292654907|ref|YP_003534804.1| - 3.2e-11 43.1 0.1 4.6e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) XylR_N PF06505.11 gi|292654907|ref|YP_003534804.1| - 0.098 12.4 0.0 0.55 10.0 0.0 2.1 2 0 0 2 2 2 0 Activator of aromatic catabolism Tubulin PF00091.25 gi|292654908|ref|YP_003534805.1| - 6.5e-25 88.5 0.2 1.5e-24 87.3 0.2 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|292654908|ref|YP_003534805.1| - 0.0044 16.3 0.6 0.0075 15.5 0.6 1.5 1 0 0 1 1 1 1 Tubulin like XhlA PF10779.9 gi|292654909|ref|YP_003534806.1| - 0.0012 19.0 1.0 0.15 12.3 0.0 2.4 1 1 1 2 2 2 1 Haemolysin XhlA Dynamitin PF04912.14 gi|292654909|ref|YP_003534806.1| - 0.0042 16.5 0.4 0.0078 15.6 0.4 1.6 1 1 0 1 1 1 1 Dynamitin CorA PF01544.18 gi|292654909|ref|YP_003534806.1| - 0.0098 15.2 1.7 0.013 14.8 1.7 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Syntaxin PF00804.25 gi|292654909|ref|YP_003534806.1| - 0.027 14.2 0.1 0.038 13.6 0.1 1.2 1 0 0 1 1 1 0 Syntaxin BLOC1_2 PF10046.9 gi|292654909|ref|YP_003534806.1| - 0.05 13.9 0.1 0.13 12.6 0.1 1.7 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SF-assemblin PF06705.11 gi|292654909|ref|YP_003534806.1| - 0.079 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin CLZ PF16526.5 gi|292654909|ref|YP_003534806.1| - 0.081 13.3 0.6 0.29 11.5 0.0 2.2 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels NPV_P10 PF05531.12 gi|292654909|ref|YP_003534806.1| - 0.096 13.2 0.1 0.46 11.0 0.0 1.9 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein CK2S PF15011.6 gi|292654909|ref|YP_003534806.1| - 0.12 12.3 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate DUF2730 PF10805.8 gi|292654909|ref|YP_003534806.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF1664 PF07889.12 gi|292654909|ref|YP_003534806.1| - 0.13 12.3 0.1 0.53 10.3 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|292654909|ref|YP_003534806.1| - 0.18 11.9 0.2 0.25 11.4 0.2 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran_CTD PF16326.5 gi|292654909|ref|YP_003534806.1| - 0.27 11.5 3.5 0.65 10.3 0.5 2.6 1 1 2 3 3 3 0 ABC transporter C-terminal domain DUF4349 PF14257.6 gi|292654909|ref|YP_003534806.1| - 0.3 10.5 7.5 0.17 11.3 5.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) HrpB7 PF09486.10 gi|292654909|ref|YP_003534806.1| - 0.69 10.3 12.3 1.9 8.9 12.3 1.7 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) ATG16 PF08614.11 gi|292654909|ref|YP_003534806.1| - 1.7 8.8 7.7 0.31 11.2 2.0 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) T2SSE PF00437.20 gi|292654911|ref|YP_003534808.1| - 2.5e-30 105.5 0.0 4.4e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|292654911|ref|YP_003534808.1| - 5.6e-05 23.6 0.3 5.6e-05 23.6 0.3 2.4 3 1 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.6 gi|292654911|ref|YP_003534808.1| - 0.0058 16.8 0.6 0.23 11.6 0.0 3.3 3 1 0 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|292654911|ref|YP_003534808.1| - 0.02 15.4 0.0 0.032 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|292654911|ref|YP_003534808.1| - 0.053 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|292654911|ref|YP_003534808.1| - 0.06 12.9 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|292654911|ref|YP_003534808.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ptaRNA1_toxin PF12703.7 gi|292654912|ref|YP_003534809.1| - 0.035 14.1 0.1 0.1 12.6 0.1 1.8 1 0 0 1 1 1 0 Toxin of toxin-antitoxin type 1 system DUF4012 PF13196.6 gi|292654916|ref|YP_003534813.1| - 0.21 12.1 4.7 3.7 8.0 0.7 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4012) NAD_binding_10 PF13460.6 gi|292654918|ref|YP_003534815.1| - 1.4e-17 64.1 0.9 2.2e-17 63.5 0.9 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|292654918|ref|YP_003534815.1| - 8.9e-15 54.8 0.0 1.2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292654918|ref|YP_003534815.1| - 6.6e-09 35.2 0.0 2.2e-08 33.5 0.0 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|292654918|ref|YP_003534815.1| - 4e-07 30.3 0.8 1.1e-06 28.8 0.2 1.9 2 0 0 2 2 2 1 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|292654918|ref|YP_003534815.1| - 8.5e-06 25.4 0.0 0.0001 21.8 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 gi|292654918|ref|YP_003534815.1| - 9.9e-05 22.9 0.1 0.00026 21.5 0.0 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|292654918|ref|YP_003534815.1| - 0.00037 20.1 0.1 0.00064 19.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|292654918|ref|YP_003534815.1| - 0.0013 19.2 0.8 0.0024 18.4 0.2 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.17 gi|292654918|ref|YP_003534815.1| - 0.0014 17.8 0.3 0.018 14.1 0.3 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain ApbA PF02558.16 gi|292654918|ref|YP_003534815.1| - 0.0021 17.7 0.0 0.0051 16.5 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|292654918|ref|YP_003534815.1| - 0.0045 17.2 0.0 0.0077 16.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|292654918|ref|YP_003534815.1| - 0.0071 16.2 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|292654918|ref|YP_003534815.1| - 0.018 14.6 0.4 0.028 14.0 0.4 1.3 1 0 0 1 1 1 0 NmrA-like family DUF1731 PF08338.11 gi|292654918|ref|YP_003534815.1| - 0.019 14.8 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1731) AlaDh_PNT_C PF01262.21 gi|292654918|ref|YP_003534815.1| - 0.025 13.9 0.8 0.039 13.3 0.8 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|292654918|ref|YP_003534815.1| - 0.058 13.8 0.1 0.13 12.7 0.1 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|292654918|ref|YP_003534815.1| - 0.082 13.2 1.2 0.21 11.9 0.3 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|292654918|ref|YP_003534815.1| - 0.098 12.1 0.4 0.19 11.2 0.1 1.6 1 1 1 2 2 2 0 short chain dehydrogenase Imm1 PF14430.6 gi|292654918|ref|YP_003534815.1| - 0.17 12.5 0.3 0.17 12.5 0.3 2.2 2 1 0 2 2 2 0 Immunity protein Imm1 DHH PF01368.20 gi|292654919|ref|YP_003534816.1| - 3.6e-10 40.0 0.1 6.3e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|292654919|ref|YP_003534816.1| - 8.2e-10 39.2 0.2 1.8e-09 38.1 0.2 1.5 1 0 0 1 1 1 1 DHHA1 domain Aldo_ket_red PF00248.21 gi|292654920|ref|YP_003534817.1| - 8.5e-25 87.5 0.0 3.4e-19 69.1 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family DZR PF12773.7 gi|292654921|ref|YP_003534818.1| - 0.0012 18.8 0.2 0.0016 18.5 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.21 gi|292654921|ref|YP_003534818.1| - 0.0023 18.0 0.5 0.0028 17.8 0.5 1.1 1 0 0 1 1 1 1 FYVE zinc finger zf-dskA_traR PF01258.17 gi|292654921|ref|YP_003534818.1| - 0.0035 17.3 4.2 0.3 11.1 0.6 2.1 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|292654921|ref|YP_003534818.1| - 0.0054 16.1 0.8 1.3 8.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain YhfH PF14149.6 gi|292654921|ref|YP_003534818.1| - 0.0058 16.6 0.6 1.1 9.3 0.1 2.2 2 0 0 2 2 2 1 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|292654921|ref|YP_003534818.1| - 0.0067 16.1 2.6 0.99 9.2 2.6 2.4 1 1 1 2 2 2 2 zinc-ribbon domain ADK_lid PF05191.14 gi|292654921|ref|YP_003534818.1| - 0.014 15.4 1.9 1.3 9.1 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.12 gi|292654921|ref|YP_003534818.1| - 0.015 15.3 1.0 0.52 10.3 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.9 gi|292654921|ref|YP_003534818.1| - 0.018 15.1 2.6 0.21 11.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|292654921|ref|YP_003534818.1| - 0.045 13.4 1.5 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|292654921|ref|YP_003534818.1| - 0.058 13.4 0.3 0.066 13.2 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|292654921|ref|YP_003534818.1| - 0.061 13.3 2.3 0.22 11.5 2.3 1.8 1 1 1 2 2 2 0 Nudix N-terminal zf-3CxxC_2 PF17180.4 gi|292654921|ref|YP_003534818.1| - 0.069 13.9 1.5 5.1 7.9 0.2 2.1 2 0 0 2 2 2 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|292654921|ref|YP_003534818.1| - 0.09 12.7 1.9 0.23 11.4 1.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.6 gi|292654921|ref|YP_003534818.1| - 0.11 13.0 2.7 1.8 9.1 0.1 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.12 gi|292654921|ref|YP_003534818.1| - 0.16 11.5 4.6 1.7 8.2 0.7 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf_C2H2_13 PF18508.1 gi|292654921|ref|YP_003534818.1| - 0.26 10.9 2.6 1.3 8.7 0.2 2.1 1 1 1 2 2 2 0 Zinc finger domain Zn-ribbon_8 PF09723.10 gi|292654921|ref|YP_003534818.1| - 0.35 11.0 2.9 3.2 7.9 3.0 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|292654921|ref|YP_003534818.1| - 0.37 11.3 1.8 4.8 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type MFS_1 PF07690.16 gi|292654922|ref|YP_003534819.1| - 6.8e-31 107.5 48.8 2.9e-20 72.5 23.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292654922|ref|YP_003534819.1| - 0.0039 16.1 18.1 0.031 13.1 18.1 2.1 1 1 0 1 1 1 1 MFS_1 like family Glyco_transf_21 PF13506.6 gi|292654923|ref|YP_003534820.1| - 0.091 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 NUDIX PF00293.28 gi|292654925|ref|YP_003534822.1| - 2.9e-14 53.2 0.1 4.3e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain DoxX PF07681.12 gi|292654926|ref|YP_003534823.1| - 1.8e-07 31.6 12.0 1.8e-07 31.6 12.0 1.9 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|292654926|ref|YP_003534823.1| - 5.7e-05 23.1 3.0 7.9e-05 22.6 3.0 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD MauE PF07291.11 gi|292654926|ref|YP_003534823.1| - 0.12 12.2 2.7 0.14 11.9 1.5 1.8 1 1 1 2 2 2 0 Methylamine utilisation protein MauE Bac_luciferase PF00296.20 gi|292654927|ref|YP_003534824.1| - 0.036 13.5 6.4 0.089 12.2 6.4 1.6 1 1 0 1 1 1 0 Luciferase-like monooxygenase PrpR_N PF06506.11 gi|292654927|ref|YP_003534824.1| - 0.12 12.0 0.0 3.5 7.2 0.0 2.7 3 0 0 3 3 3 0 Propionate catabolism activator DAO PF01266.24 gi|292654928|ref|YP_003534825.1| - 2.6e-50 172.0 11.7 2.9e-50 171.8 11.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292654928|ref|YP_003534825.1| - 2.1e-07 30.4 0.1 0.00033 20.0 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292654928|ref|YP_003534825.1| - 1.1e-06 28.0 4.5 1.9e-06 27.2 4.5 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|292654928|ref|YP_003534825.1| - 1.4e-06 28.4 0.6 3.8e-06 27.0 0.6 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|292654928|ref|YP_003534825.1| - 5.3e-05 22.1 0.1 0.00048 18.9 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|292654928|ref|YP_003534825.1| - 0.00034 19.9 0.1 0.00068 18.9 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|292654928|ref|YP_003534825.1| - 0.00046 20.7 0.6 0.0015 19.1 0.2 2.0 3 0 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|292654928|ref|YP_003534825.1| - 0.00064 19.1 0.5 0.001 18.4 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|292654928|ref|YP_003534825.1| - 0.0017 18.0 0.2 0.0031 17.2 0.2 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|292654928|ref|YP_003534825.1| - 0.0025 18.2 0.3 0.0077 16.6 0.1 1.8 1 1 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|292654928|ref|YP_003534825.1| - 0.0068 16.0 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|292654928|ref|YP_003534825.1| - 0.0082 16.1 4.5 0.069 13.1 0.3 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|292654928|ref|YP_003534825.1| - 0.01 15.7 0.3 0.018 14.9 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|292654928|ref|YP_003534825.1| - 0.012 14.7 0.5 0.016 14.3 0.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|292654928|ref|YP_003534825.1| - 0.032 13.5 0.3 0.057 12.7 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|292654928|ref|YP_003534825.1| - 0.097 11.9 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|292654928|ref|YP_003534825.1| - 0.1 11.9 0.0 0.24 10.7 0.0 1.6 1 0 0 1 1 1 0 ThiF family Ldh_1_N PF00056.23 gi|292654928|ref|YP_003534825.1| - 0.13 12.4 0.4 0.67 10.0 0.0 2.0 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|292654928|ref|YP_003534825.1| - 0.13 11.6 3.7 0.069 12.5 1.2 1.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|292654928|ref|YP_003534825.1| - 0.2 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HSP20 PF00011.21 gi|292654929|ref|YP_003534826.1| - 5.8e-05 23.2 0.0 0.00012 22.1 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family Big_6 PF17936.1 gi|292654929|ref|YP_003534826.1| - 0.017 15.4 0.5 0.058 13.7 0.4 1.8 2 0 0 2 2 2 0 Bacterial Ig domain FKBP26_C PF18046.1 gi|292654929|ref|YP_003534826.1| - 0.076 13.1 0.0 0.19 11.8 0.0 1.6 2 0 0 2 2 2 0 FKBP26_C-terminal ArsA_HSP20 PF17886.1 gi|292654929|ref|YP_003534826.1| - 0.12 11.9 0.1 0.61 9.7 0.0 2.0 2 0 0 2 2 2 0 HSP20-like domain found in ArsA zf-Di19 PF05605.12 gi|292654930|ref|YP_003534827.1| - 0.044 14.1 0.4 0.065 13.5 0.1 1.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PyrI_C PF02748.15 gi|292654930|ref|YP_003534827.1| - 0.34 10.8 3.4 1.8 8.6 3.4 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Radical_SAM PF04055.21 gi|292654931|ref|YP_003534828.1| - 2.5e-14 54.0 0.1 9.6e-14 52.1 0.1 2.1 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|292654931|ref|YP_003534828.1| - 5.9e-07 29.0 0.0 2e-06 27.3 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|292654931|ref|YP_003534828.1| - 0.00011 22.3 0.0 0.00032 20.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|292654931|ref|YP_003534828.1| - 0.0086 16.7 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|292654931|ref|YP_003534828.1| - 0.12 12.3 0.0 0.48 10.5 0.0 2.0 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|292654931|ref|YP_003534828.1| - 0.17 12.0 0.0 0.5 10.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif TRAM PF01938.20 gi|292654932|ref|YP_003534829.1| - 1.7e-14 53.5 5.5 2.3e-14 53.1 3.6 2.0 2 0 0 2 2 2 1 TRAM domain CxxCxxCC PF03692.15 gi|292654933|ref|YP_003534830.1| - 1.6e-13 51.2 0.4 2.8e-13 50.3 0.4 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|292654933|ref|YP_003534830.1| - 0.053 13.9 1.6 0.1 12.9 0.1 2.0 2 0 0 2 2 2 0 High potential iron-sulfur protein Lactamase_B PF00753.27 gi|292654934|ref|YP_003534831.1| - 2.5e-15 57.0 9.6 4.5e-15 56.2 9.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|292654934|ref|YP_003534831.1| - 0.00034 20.5 0.1 0.00077 19.4 0.1 1.7 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_3 PF13483.6 gi|292654934|ref|YP_003534831.1| - 0.00093 19.1 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1442 PF07279.11 gi|292654934|ref|YP_003534831.1| - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1442) Lactamase_B_2 PF12706.7 gi|292654934|ref|YP_003534831.1| - 0.003 17.1 0.5 0.0059 16.2 0.5 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_24 PF13412.6 gi|292654935|ref|YP_003534832.1| - 1.8e-06 27.4 0.1 3.7e-06 26.4 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292654935|ref|YP_003534832.1| - 0.00024 21.0 0.1 0.00032 20.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292654935|ref|YP_003534832.1| - 0.00024 21.1 0.6 0.001 19.1 0.6 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|292654935|ref|YP_003534832.1| - 0.00077 19.1 0.4 0.0012 18.4 0.3 1.4 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|292654935|ref|YP_003534832.1| - 0.0037 17.2 0.4 0.023 14.7 0.1 2.3 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|292654935|ref|YP_003534832.1| - 0.036 14.0 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|292654935|ref|YP_003534832.1| - 0.057 13.3 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Peptidase_M28 PF04389.17 gi|292654935|ref|YP_003534832.1| - 0.061 13.0 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 HTH_36 PF13730.6 gi|292654935|ref|YP_003534832.1| - 0.089 12.8 0.0 0.37 10.8 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|292654935|ref|YP_003534832.1| - 0.16 11.9 1.0 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|292654935|ref|YP_003534832.1| - 0.19 12.1 0.0 0.26 11.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Methyltransf_25 PF13649.6 gi|292654936|ref|YP_003534833.1| - 5.2e-24 84.8 0.3 1.5e-23 83.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292654936|ref|YP_003534833.1| - 6.3e-23 81.3 0.1 1.4e-22 80.1 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292654936|ref|YP_003534833.1| - 8e-17 61.4 0.0 1.2e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292654936|ref|YP_003534833.1| - 4.6e-15 55.6 0.0 7.7e-15 54.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|292654936|ref|YP_003534833.1| - 1.3e-14 54.3 0.0 2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292654936|ref|YP_003534833.1| - 7.7e-13 49.0 0.0 1.3e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|292654936|ref|YP_003534833.1| - 8.7e-07 28.2 0.0 1.3e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|292654936|ref|YP_003534833.1| - 1e-05 25.3 0.0 3.9e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|292654936|ref|YP_003534833.1| - 0.00023 20.8 0.0 0.0003 20.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 gi|292654936|ref|YP_003534833.1| - 0.00059 19.2 0.0 0.00082 18.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|292654936|ref|YP_003534833.1| - 0.0006 19.3 0.0 0.00092 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|292654936|ref|YP_003534833.1| - 0.00086 18.9 0.0 0.0039 16.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.20 gi|292654936|ref|YP_003534833.1| - 0.0011 18.1 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|292654936|ref|YP_003534833.1| - 0.0039 16.8 0.0 0.0099 15.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|292654936|ref|YP_003534833.1| - 0.0053 16.8 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|292654936|ref|YP_003534833.1| - 0.0055 15.9 0.0 0.0082 15.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_20 PF12147.8 gi|292654936|ref|YP_003534833.1| - 0.0098 15.1 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|292654936|ref|YP_003534833.1| - 0.013 14.5 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NodS PF05401.11 gi|292654936|ref|YP_003534833.1| - 0.015 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.19 gi|292654936|ref|YP_003534833.1| - 0.025 14.3 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|292654936|ref|YP_003534833.1| - 0.027 14.6 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|292654936|ref|YP_003534833.1| - 0.053 13.4 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.11 gi|292654936|ref|YP_003534833.1| - 0.069 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DUF938 PF06080.12 gi|292654936|ref|YP_003534833.1| - 0.093 12.5 0.0 0.22 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF938) Methyltrans_SAM PF10672.9 gi|292654936|ref|YP_003534833.1| - 0.095 11.8 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase TehB PF03848.14 gi|292654936|ref|YP_003534833.1| - 0.21 11.0 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Glycos_transf_2 PF00535.26 gi|292654937|ref|YP_003534834.1| - 7.4e-14 51.9 0.1 3.7e-13 49.6 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292654937|ref|YP_003534834.1| - 0.0011 18.9 1.6 0.0092 15.9 1.6 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 KOW PF00467.29 gi|292654937|ref|YP_003534834.1| - 0.028 14.4 0.4 0.057 13.4 0.4 1.6 1 0 0 1 1 1 0 KOW motif Glyco_tranf_2_2 PF10111.9 gi|292654937|ref|YP_003534834.1| - 0.22 11.0 0.0 0.79 9.1 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Amidohydro_2 PF04909.14 gi|292654938|ref|YP_003534835.1| - 7.1e-12 45.7 1.0 1.3e-11 44.9 1.0 1.4 1 1 0 1 1 1 1 Amidohydrolase HTH_10 PF04967.12 gi|292654939|ref|YP_003534836.1| - 2.8e-15 55.8 0.9 4.3e-15 55.2 0.9 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|292654939|ref|YP_003534836.1| - 4.8e-10 39.5 3.4 8.6e-10 38.7 3.4 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|292654939|ref|YP_003534836.1| - 7.2e-05 22.2 0.5 0.00015 21.2 0.5 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|292654939|ref|YP_003534836.1| - 9e-05 22.2 0.8 0.00021 21.1 0.5 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292654939|ref|YP_003534836.1| - 0.0044 16.5 0.0 0.0099 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292654939|ref|YP_003534836.1| - 0.01 15.7 0.1 0.028 14.3 0.1 1.8 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|292654939|ref|YP_003534836.1| - 0.018 14.7 0.3 0.045 13.4 0.3 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|292654939|ref|YP_003534836.1| - 0.04 14.0 0.3 0.04 14.0 0.3 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|292654939|ref|YP_003534836.1| - 0.046 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_30 PF13556.6 gi|292654939|ref|YP_003534836.1| - 0.1 12.4 0.6 0.19 11.5 0.6 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain UPF0122 PF04297.14 gi|292654939|ref|YP_003534836.1| - 0.17 12.1 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.6 gi|292654939|ref|YP_003534836.1| - 0.34 10.8 0.1 0.34 10.8 0.1 2.3 3 0 0 3 3 3 0 Homeodomain-like domain HalOD1 PF18545.1 gi|292654940|ref|YP_003534837.1| - 7.3e-16 58.2 0.1 9e-16 57.9 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Cpn60_TCP1 PF00118.24 gi|292654941|ref|YP_003534838.1| - 2.8e-153 511.1 12.8 3.2e-153 510.9 12.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|292654941|ref|YP_003534838.1| - 0.021 15.1 0.3 0.17 12.2 0.0 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor SIS_2 PF13580.6 gi|292654941|ref|YP_003534838.1| - 0.04 13.9 0.2 0.13 12.3 0.2 2.0 1 0 0 1 1 1 0 SIS domain HTH_29 PF13551.6 gi|292654941|ref|YP_003534838.1| - 0.062 13.3 0.0 0.23 11.5 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn helix EccE PF11203.8 gi|292654941|ref|YP_003534838.1| - 1.4 9.3 4.8 13 6.1 0.8 3.7 2 1 1 3 3 3 0 Putative type VII ESX secretion system translocon, EccE AA_permease_2 PF13520.6 gi|292654942|ref|YP_003534839.1| - 1.9e-31 109.4 31.1 2.4e-31 109.0 31.1 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|292654942|ref|YP_003534839.1| - 0.006 15.5 6.0 1.3 7.8 4.4 2.6 2 1 0 2 2 2 2 Spore germination protein UPF0126 PF03458.13 gi|292654943|ref|YP_003534840.1| - 6.9e-38 128.4 33.0 1.9e-19 69.3 13.3 2.4 2 0 0 2 2 2 2 UPF0126 domain SAM_adeno_trans PF01887.16 gi|292654944|ref|YP_003534841.1| - 1.9e-74 250.1 0.1 2.2e-74 249.9 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|292654945|ref|YP_003534842.1| - 1e-15 58.2 0.0 2.2e-15 57.1 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|292654945|ref|YP_003534842.1| - 0.096 12.4 0.0 1.2 8.7 0.0 2.4 1 1 2 3 3 3 0 Citrate lyase ligase C-terminal domain SNAD3 PF18749.1 gi|292654945|ref|YP_003534842.1| - 0.15 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 3 Lon_C PF05362.13 gi|292654946|ref|YP_003534843.1| - 8.9e-35 120.1 3.2 1.4e-34 119.5 3.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|292654946|ref|YP_003534843.1| - 3e-30 105.5 0.0 1.6e-22 80.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|292654946|ref|YP_003534843.1| - 1.9e-17 63.3 0.1 1.1e-10 41.3 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|292654946|ref|YP_003534843.1| - 2.7e-14 53.2 0.0 1.3e-07 31.4 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|292654946|ref|YP_003534843.1| - 6.4e-10 39.2 0.0 0.00064 19.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|292654946|ref|YP_003534843.1| - 3.6e-09 36.5 0.4 7.7e-09 35.4 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|292654946|ref|YP_003534843.1| - 4.5e-07 29.2 0.0 0.028 13.5 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|292654946|ref|YP_003534843.1| - 4.9e-07 30.2 0.0 0.066 13.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|292654946|ref|YP_003534843.1| - 3.8e-06 26.7 0.1 0.0048 16.7 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|292654946|ref|YP_003534843.1| - 0.00011 21.6 0.5 0.068 12.4 0.0 2.7 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|292654946|ref|YP_003534843.1| - 0.00012 22.4 0.0 0.0021 18.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|292654946|ref|YP_003534843.1| - 0.00019 21.3 0.1 0.25 11.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|292654946|ref|YP_003534843.1| - 0.00027 20.5 0.0 0.00095 18.7 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|292654946|ref|YP_003534843.1| - 0.00048 20.3 0.0 0.96 9.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.6 gi|292654946|ref|YP_003534843.1| - 0.00073 19.9 0.0 0.56 10.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|292654946|ref|YP_003534843.1| - 0.0022 17.8 0.0 0.1 12.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|292654946|ref|YP_003534843.1| - 0.0068 15.4 0.0 0.31 9.9 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_33 PF13671.6 gi|292654946|ref|YP_003534843.1| - 0.016 15.4 0.0 0.071 13.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|292654946|ref|YP_003534843.1| - 0.017 14.6 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_2 PF07724.14 gi|292654946|ref|YP_003534843.1| - 0.022 14.9 0.0 3.8 7.6 0.0 2.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) MCM_lid PF17855.1 gi|292654946|ref|YP_003534843.1| - 0.022 15.2 0.1 0.27 11.7 0.0 2.5 1 1 1 2 2 2 0 MCM AAA-lid domain DUF815 PF05673.13 gi|292654946|ref|YP_003534843.1| - 0.029 13.5 0.0 0.057 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|292654946|ref|YP_003534843.1| - 0.032 14.7 0.0 0.11 13.0 0.0 1.9 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|292654946|ref|YP_003534843.1| - 0.039 13.9 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|292654946|ref|YP_003534843.1| - 0.041 14.3 0.0 0.32 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|292654946|ref|YP_003534843.1| - 0.042 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.7 gi|292654946|ref|YP_003534843.1| - 0.056 12.4 0.0 0.23 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|292654946|ref|YP_003534843.1| - 0.057 12.3 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|292654946|ref|YP_003534843.1| - 0.072 13.6 0.0 0.33 11.5 0.0 2.2 2 0 0 2 2 1 0 AAA domain Parvo_NS1 PF01057.17 gi|292654946|ref|YP_003534843.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CPBP PF02517.16 gi|292654947|ref|YP_003534844.1| - 1.4e-13 51.0 5.7 2.8e-11 43.6 10.2 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF3464 PF11947.8 gi|292654947|ref|YP_003534844.1| - 0.044 13.5 0.5 0.15 11.8 0.5 1.9 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 DUF308 PF03729.13 gi|292654948|ref|YP_003534845.1| - 7.6 6.9 13.3 2.2 8.7 7.9 2.2 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DNA_binding_1 PF01035.20 gi|292654949|ref|YP_003534846.1| - 2.7e-06 27.4 0.0 5.1e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain IGPS PF00218.21 gi|292654950|ref|YP_003534847.1| - 1.1e-76 257.4 0.0 1.2e-76 257.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|292654950|ref|YP_003534847.1| - 9.6e-06 25.5 0.2 7e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|292654950|ref|YP_003534847.1| - 0.00053 19.2 0.4 0.0033 16.6 0.1 2.3 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|292654950|ref|YP_003534847.1| - 0.0011 18.5 0.1 0.11 12.0 0.0 2.8 2 2 1 3 3 3 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|292654950|ref|YP_003534847.1| - 0.015 14.5 0.0 0.035 13.3 0.0 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase FMN_dh PF01070.18 gi|292654950|ref|YP_003534847.1| - 0.034 13.2 1.1 0.2 10.7 1.2 2.0 2 1 1 3 3 3 0 FMN-dependent dehydrogenase DUF1611_N PF17396.2 gi|292654950|ref|YP_003534847.1| - 0.039 14.2 0.3 4.2 7.7 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain ThiG PF05690.14 gi|292654950|ref|YP_003534847.1| - 0.044 13.1 0.1 0.28 10.5 0.1 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|292654951|ref|YP_003534848.1| - 1e-38 133.4 0.7 1.5e-38 132.9 0.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|292654952|ref|YP_003534849.1| - 1.7e-95 318.8 0.0 2.1e-95 318.5 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|292654952|ref|YP_003534849.1| - 0.0018 17.8 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|292654952|ref|YP_003534849.1| - 0.0036 16.8 0.2 0.076 12.5 0.2 2.2 2 0 0 2 2 2 1 PcrB family H-kinase_dim PF02895.14 gi|292654952|ref|YP_003534849.1| - 0.14 12.6 0.0 0.29 11.6 0.0 1.5 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain DeoC PF01791.9 gi|292654953|ref|YP_003534850.1| - 1.6e-41 142.5 0.0 2e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|292654953|ref|YP_003534850.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel TMP-TENI PF02581.17 gi|292654953|ref|YP_003534850.1| - 0.097 12.0 1.0 4.3 6.6 0.3 3.0 3 1 0 3 3 3 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|292654953|ref|YP_003534850.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DNA_binding_1 PF01035.20 gi|292654954|ref|YP_003534851.1| - 8.1e-25 86.8 0.0 1e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DHQS PF01959.16 gi|292654955|ref|YP_003534852.1| - 4e-145 483.2 0.9 4.5e-145 483.0 0.9 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II QRPTase_C PF01729.19 gi|292654955|ref|YP_003534852.1| - 0.01 15.6 0.9 0.17 11.6 0.2 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.6 gi|292654955|ref|YP_003534852.1| - 0.091 13.1 0.3 7.1 6.9 0.1 2.9 2 1 0 2 2 2 0 Hint domain Hint PF01079.20 gi|292654955|ref|YP_003534852.1| - 0.17 11.4 0.0 0.94 8.9 0.0 2.1 2 0 0 2 2 2 0 Hint module DZR PF12773.7 gi|292654956|ref|YP_003534853.1| - 0.0022 18.0 0.3 0.0032 17.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|292654956|ref|YP_003534853.1| - 0.0056 16.6 0.2 0.9 9.5 0.0 2.4 1 1 1 2 2 2 1 Nudix N-terminal TM2 PF05154.16 gi|292654956|ref|YP_003534853.1| - 0.0058 16.9 2.8 0.011 16.1 2.8 1.4 1 0 0 1 1 1 1 TM2 domain DNA_ligase_ZBD PF03119.16 gi|292654956|ref|YP_003534853.1| - 0.015 15.3 0.4 0.45 10.6 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|292654956|ref|YP_003534853.1| - 0.027 14.2 1.7 3.3 7.5 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|292654956|ref|YP_003534853.1| - 0.081 13.7 0.1 0.1 13.3 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family Rad50_zn_hook PF04423.14 gi|292654956|ref|YP_003534853.1| - 0.086 12.7 1.4 0.22 11.4 0.2 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif Prok-RING_1 PF14446.6 gi|292654956|ref|YP_003534853.1| - 0.14 12.1 0.7 0.21 11.5 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|292654956|ref|YP_003534853.1| - 0.24 11.5 2.5 0.52 10.5 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF3953 PF13129.6 gi|292654956|ref|YP_003534853.1| - 0.37 10.6 0.1 0.37 10.6 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) zf-ribbon_3 PF13248.6 gi|292654956|ref|YP_003534853.1| - 2 7.9 4.9 6.8 6.3 4.8 1.8 1 1 1 2 2 2 0 zinc-ribbon domain TerY_C PF15616.6 gi|292654956|ref|YP_003534853.1| - 3.4 7.8 4.2 12 6.1 0.6 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain N6_N4_Mtase PF01555.18 gi|292654957|ref|YP_003534854.1| - 4.4e-35 121.5 0.0 6.2e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|292654957|ref|YP_003534854.1| - 0.001 19.7 0.1 0.24 12.0 0.1 3.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292654957|ref|YP_003534854.1| - 0.015 16.0 0.0 5.8 7.7 0.0 3.2 2 1 1 3 3 3 0 Methyltransferase domain UPF0020 PF01170.18 gi|292654957|ref|YP_003534854.1| - 0.029 14.1 0.0 2.4 7.8 0.0 2.5 3 0 0 3 3 3 0 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|292654957|ref|YP_003534854.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TFIIB PF00382.19 gi|292654958|ref|YP_003534855.1| - 1.3e-39 134.1 0.5 1.7e-19 69.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292654958|ref|YP_003534855.1| - 2.1e-15 55.9 2.0 4.4e-15 54.9 2.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|292654958|ref|YP_003534855.1| - 0.0052 16.7 1.2 0.014 15.3 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Anti-TRAP PF15777.5 gi|292654958|ref|YP_003534855.1| - 0.0053 16.7 1.0 0.01 15.8 1.0 1.5 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein Sigma70_r4 PF04545.16 gi|292654958|ref|YP_003534855.1| - 0.013 15.0 6.5 0.59 9.7 0.0 4.4 5 0 0 5 5 5 0 Sigma-70, region 4 DUF5419 PF17441.2 gi|292654958|ref|YP_003534855.1| - 0.039 14.1 0.0 2.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5419) Cyclin_C PF02984.19 gi|292654958|ref|YP_003534855.1| - 0.073 13.2 0.1 6.4 6.9 0.1 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain A2L_zn_ribbon PF08792.10 gi|292654958|ref|YP_003534855.1| - 0.087 12.6 3.2 0.96 9.2 3.8 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|292654958|ref|YP_003534855.1| - 0.1 13.0 0.5 0.1 13.0 0.5 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|292654958|ref|YP_003534855.1| - 0.3 10.6 3.9 1.2 8.6 3.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|292654958|ref|YP_003534855.1| - 0.42 10.3 3.0 0.73 9.6 3.0 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_AsnC-type PF13404.6 gi|292654958|ref|YP_003534855.1| - 0.76 9.7 3.6 2.4 8.1 0.0 3.3 4 1 0 4 4 4 0 AsnC-type helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|292654958|ref|YP_003534855.1| - 1.7 8.8 4.8 3.3 7.9 0.7 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|292654958|ref|YP_003534855.1| - 2 8.5 6.2 1.6 8.8 3.9 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 gi|292654958|ref|YP_003534855.1| - 2.7 8.0 5.0 9.3 6.3 5.0 1.9 1 0 0 1 1 1 0 Nudix N-terminal Peripla_BP_2 PF01497.18 gi|292654959|ref|YP_003534856.1| - 6.2e-11 42.3 0.0 9.5e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein NTPase_I-T PF01931.18 gi|292654960|ref|YP_003534857.1| - 3.1e-47 160.4 0.1 3.5e-47 160.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LPG_synthase_TM PF03706.13 gi|292654961|ref|YP_003534858.1| - 3.8e-42 144.9 35.5 5.9e-42 144.2 35.5 1.3 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|292654961|ref|YP_003534858.1| - 3.6e-28 98.5 0.1 5.3e-28 98.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292654961|ref|YP_003534858.1| - 2e-12 47.5 0.5 4.1e-12 46.5 0.5 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|292654961|ref|YP_003534858.1| - 0.00057 19.4 0.0 0.00085 18.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|292654961|ref|YP_003534858.1| - 0.0043 17.5 0.5 0.0081 16.7 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 HTH_24 PF13412.6 gi|292654962|ref|YP_003534859.1| - 0.099 12.2 0.1 0.63 9.7 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 gi|292654962|ref|YP_003534859.1| - 0.22 12.2 0.0 0.25 12.0 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal MarR_2 PF12802.7 gi|292654963|ref|YP_003534860.1| - 5.7e-09 35.7 0.5 6.9e-07 29.1 0.3 2.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|292654963|ref|YP_003534860.1| - 6.1e-08 32.6 0.7 0.00022 21.2 0.4 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|292654963|ref|YP_003534860.1| - 8.6e-07 28.4 0.0 4.7e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|292654963|ref|YP_003534860.1| - 3.7e-06 26.8 0.0 6.8e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|292654963|ref|YP_003534860.1| - 1e-05 25.6 0.0 0.12 12.5 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|292654963|ref|YP_003534860.1| - 2.4e-05 24.2 0.0 4.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|292654963|ref|YP_003534860.1| - 7.8e-05 22.5 0.0 0.0038 17.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|292654963|ref|YP_003534860.1| - 9.6e-05 22.2 0.0 0.0089 15.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|292654963|ref|YP_003534860.1| - 0.00012 21.9 0.1 0.0006 19.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|292654963|ref|YP_003534860.1| - 0.00025 20.8 1.6 0.0018 18.1 0.3 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|292654963|ref|YP_003534860.1| - 0.00064 19.5 1.3 0.00077 19.2 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|292654963|ref|YP_003534860.1| - 0.00098 19.1 0.2 0.0046 17.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.21 gi|292654963|ref|YP_003534860.1| - 0.003 17.2 0.3 0.0092 15.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|292654963|ref|YP_003534860.1| - 0.0036 17.1 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|292654963|ref|YP_003534860.1| - 0.01 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|292654963|ref|YP_003534860.1| - 0.012 15.5 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.13 gi|292654963|ref|YP_003534860.1| - 0.019 14.6 0.0 4.7 6.8 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_17 PF12728.7 gi|292654963|ref|YP_003534860.1| - 0.026 14.7 0.1 0.45 10.7 0.0 2.4 3 0 0 3 3 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|292654963|ref|YP_003534860.1| - 0.043 13.9 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 gi|292654963|ref|YP_003534860.1| - 0.052 13.1 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 RepL PF05732.11 gi|292654963|ref|YP_003534860.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_3 PF01381.22 gi|292654963|ref|YP_003534860.1| - 0.099 12.7 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix MerR_1 PF13411.6 gi|292654963|ref|YP_003534860.1| - 0.11 12.6 0.1 0.25 11.5 0.0 1.6 2 0 0 2 2 1 0 MerR HTH family regulatory protein HTH_10 PF04967.12 gi|292654963|ref|YP_003534860.1| - 0.13 12.1 0.6 0.4 10.5 0.0 2.1 3 0 0 3 3 2 0 HTH DNA binding domain Phage_NinH PF06322.11 gi|292654963|ref|YP_003534860.1| - 0.14 12.1 0.1 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Phage NinH protein HTH_6 PF01418.17 gi|292654963|ref|YP_003534860.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family LRV PF01816.17 gi|292654963|ref|YP_003534860.1| - 0.58 10.7 4.7 0.38 11.3 1.3 2.6 2 0 0 2 2 1 0 Leucine rich repeat variant Band_7 PF01145.25 gi|292654964|ref|YP_003534861.1| - 1e-37 129.9 4.0 1e-37 129.9 4.0 2.5 3 0 0 3 3 3 2 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|292654964|ref|YP_003534861.1| - 0.0029 17.3 0.4 0.0065 16.2 0.2 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|292654965|ref|YP_003534862.1| - 1.2e-06 28.8 0.3 3.3e-06 27.4 0.3 1.9 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding Mrr_cat PF04471.12 gi|292654966|ref|YP_003534863.1| - 8.1e-08 32.3 0.0 1.8e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease PK PF00224.21 gi|292654969|ref|YP_003534866.1| - 5.6e-110 367.5 5.1 7.9e-110 367.0 5.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|292654969|ref|YP_003534866.1| - 2.2e-31 108.5 0.7 5.7e-31 107.2 0.7 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|292654969|ref|YP_003534866.1| - 4.2e-10 39.2 4.0 5.7e-10 38.8 0.1 3.3 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|292654969|ref|YP_003534866.1| - 0.0062 15.7 4.8 0.01 15.0 0.5 2.4 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF2187 PF09953.9 gi|292654969|ref|YP_003534866.1| - 0.12 12.4 0.3 0.61 10.1 0.0 2.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2187) tRNA-synt_1g PF09334.11 gi|292654972|ref|YP_003534869.1| - 3.6e-141 470.4 0.3 2.3e-85 286.7 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|292654972|ref|YP_003534869.1| - 1.8e-21 76.1 0.3 3e-21 75.4 0.3 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|292654972|ref|YP_003534869.1| - 2.7e-15 55.7 0.0 1.8e-08 33.1 0.1 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|292654972|ref|YP_003534869.1| - 4.9e-09 36.0 0.0 3.2e-06 26.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|292654972|ref|YP_003534869.1| - 6.3e-07 29.5 0.0 1.2e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Apolipoprotein PF01442.18 gi|292654972|ref|YP_003534869.1| - 0.016 15.1 1.7 1.6 8.6 0.0 2.7 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain SIMPL PF04402.14 gi|292654972|ref|YP_003534869.1| - 0.061 13.8 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF541) tRNA-synt_1f PF01921.18 gi|292654972|ref|YP_003534869.1| - 0.071 12.0 0.5 3.7 6.4 0.2 3.0 2 1 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|292654972|ref|YP_003534869.1| - 0.076 11.9 0.0 1.1 8.1 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (R) DUF2423 PF10338.9 gi|292654972|ref|YP_003534869.1| - 0.19 12.0 0.6 0.47 10.7 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) SNARE_assoc PF09335.11 gi|292654973|ref|YP_003534870.1| - 6.7e-09 36.3 0.6 6.7e-09 36.3 0.6 1.7 1 1 1 2 2 2 1 SNARE associated Golgi protein SieB PF14163.6 gi|292654973|ref|YP_003534870.1| - 0.36 10.3 1.0 0.57 9.7 1.0 1.3 1 0 0 1 1 1 0 Super-infection exclusion protein B Pyridoxal_deC PF00282.19 gi|292654974|ref|YP_003534871.1| - 2.3e-30 105.6 0.0 6.4e-30 104.1 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|292654974|ref|YP_003534871.1| - 1.8e-13 50.2 0.1 3e-13 49.5 0.1 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|292654974|ref|YP_003534871.1| - 1.2e-08 34.5 0.0 7.1e-08 32.0 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.19 gi|292654974|ref|YP_003534871.1| - 0.022 13.4 0.0 0.034 12.7 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase PPDK_N PF01326.19 gi|292654975|ref|YP_003534872.1| - 9.9e-110 366.9 0.0 1.6e-109 366.2 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|292654975|ref|YP_003534872.1| - 6.5e-82 274.9 0.0 9.2e-82 274.4 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|292654975|ref|YP_003534872.1| - 3e-27 94.1 4.1 7.3e-27 92.9 4.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|292654975|ref|YP_003534872.1| - 0.0049 16.0 0.0 0.012 14.8 0.0 1.6 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Epimerase_2 PF02350.19 gi|292654975|ref|YP_003534872.1| - 0.014 14.3 0.2 0.13 11.1 0.0 2.4 3 0 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase PEP-utilisers_N PF05524.13 gi|292654975|ref|YP_003534872.1| - 0.017 15.3 0.6 2.7 8.2 0.0 3.1 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal LIM PF00412.22 gi|292654976|ref|YP_003534873.1| - 0.11 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 LIM domain 53-BP1_Tudor PF09038.10 gi|292654976|ref|YP_003534873.1| - 0.13 12.2 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Tumour suppressor p53-binding protein-1 Tudor DnaJ PF00226.31 gi|292654977|ref|YP_003534874.1| - 7.7e-07 29.2 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain MarR_2 PF12802.7 gi|292654978|ref|YP_003534875.1| - 6.4e-12 45.2 0.2 2.3e-11 43.4 0.2 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|292654978|ref|YP_003534875.1| - 1.2e-11 44.0 0.0 2.1e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292654978|ref|YP_003534875.1| - 1.4e-08 34.5 0.0 4.7e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|292654978|ref|YP_003534875.1| - 4.5e-07 30.3 0.1 1.5e-06 28.6 0.1 2.0 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|292654978|ref|YP_003534875.1| - 1.5e-06 28.1 0.1 4.8e-06 26.5 0.1 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|292654978|ref|YP_003534875.1| - 1.7e-05 24.8 0.3 7.2e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292654978|ref|YP_003534875.1| - 4.8e-05 23.1 0.0 0.0001 22.1 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|292654978|ref|YP_003534875.1| - 4.8e-05 23.3 0.0 0.00011 22.2 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|292654978|ref|YP_003534875.1| - 5.6e-05 23.0 0.0 9.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|292654978|ref|YP_003534875.1| - 7.7e-05 22.4 0.0 0.00019 21.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain SMC_ScpB PF04079.16 gi|292654978|ref|YP_003534875.1| - 0.00019 21.1 0.1 0.00031 20.4 0.1 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB TrmB PF01978.19 gi|292654978|ref|YP_003534875.1| - 0.0005 19.9 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|292654978|ref|YP_003534875.1| - 0.0011 19.0 0.1 0.0024 17.9 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|292654978|ref|YP_003534875.1| - 0.0014 19.0 0.0 0.004 17.5 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.6 gi|292654978|ref|YP_003534875.1| - 0.0017 18.5 0.1 0.004 17.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|292654978|ref|YP_003534875.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|292654978|ref|YP_003534875.1| - 0.0031 17.1 0.1 0.0077 15.9 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|292654978|ref|YP_003534875.1| - 0.0038 17.4 0.0 0.0081 16.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.10 gi|292654978|ref|YP_003534875.1| - 0.0046 16.9 0.3 0.017 15.0 0.1 2.1 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_23 PF13384.6 gi|292654978|ref|YP_003534875.1| - 0.0049 16.6 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HemN_C PF06969.16 gi|292654978|ref|YP_003534875.1| - 0.0058 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 HemN C-terminal domain Mnd1 PF03962.15 gi|292654978|ref|YP_003534875.1| - 0.0065 16.7 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 Mnd1 HTH domain Rio2_N PF09202.11 gi|292654978|ref|YP_003534875.1| - 0.019 15.2 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal DUF4364 PF14277.6 gi|292654978|ref|YP_003534875.1| - 0.019 14.7 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) NMD3 PF04981.13 gi|292654978|ref|YP_003534875.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 NMD3 family Mrr_N PF14338.6 gi|292654978|ref|YP_003534875.1| - 0.021 14.9 0.7 0.064 13.4 0.1 2.1 2 1 0 2 2 2 0 Mrr N-terminal domain LacI PF00356.21 gi|292654978|ref|YP_003534875.1| - 0.045 13.5 0.1 0.3 10.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family LexA_DNA_bind PF01726.16 gi|292654978|ref|YP_003534875.1| - 0.046 13.5 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|292654978|ref|YP_003534875.1| - 0.052 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|292654978|ref|YP_003534875.1| - 0.057 13.6 1.3 0.089 13.0 0.1 2.1 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin HTH_3 PF01381.22 gi|292654978|ref|YP_003534875.1| - 0.063 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix TetR_C_7 PF14246.6 gi|292654978|ref|YP_003534875.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain HTH_1 PF00126.27 gi|292654978|ref|YP_003534875.1| - 0.072 13.1 0.0 0.22 11.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|292654978|ref|YP_003534875.1| - 0.13 12.1 0.3 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HU-DNA_bdg PF14848.6 gi|292654978|ref|YP_003534875.1| - 0.18 11.8 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 DNA-binding domain FaeA PF04703.12 gi|292654978|ref|YP_003534875.1| - 0.25 11.8 3.0 0.52 10.7 0.0 2.6 3 0 0 3 3 2 0 FaeA-like protein Metallophos PF00149.28 gi|292654979|ref|YP_003534876.1| - 0.00011 22.8 0.1 0.0002 21.9 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|292654979|ref|YP_003534876.1| - 0.00021 21.6 0.6 0.0003 21.0 0.6 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Amino_oxidase PF01593.24 gi|292654980|ref|YP_003534877.1| - 2e-51 175.7 3.9 2.3e-50 172.2 3.9 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|292654980|ref|YP_003534877.1| - 2.9e-17 62.7 0.2 8.6e-17 61.1 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|292654980|ref|YP_003534877.1| - 1.4e-14 54.4 4.1 7.3e-07 29.1 1.7 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292654980|ref|YP_003534877.1| - 3.1e-10 39.8 0.4 1.3e-05 24.5 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292654980|ref|YP_003534877.1| - 4e-09 36.9 0.3 2.8e-05 24.6 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292654980|ref|YP_003534877.1| - 7.3e-09 34.8 0.0 0.00011 21.1 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|292654980|ref|YP_003534877.1| - 3.4e-08 33.1 0.1 4.3e-06 26.2 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|292654980|ref|YP_003534877.1| - 1.1e-06 28.2 0.1 0.014 14.7 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292654980|ref|YP_003534877.1| - 2.9e-06 26.6 2.5 7.3e-06 25.3 1.0 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|292654980|ref|YP_003534877.1| - 4e-06 26.9 4.4 0.019 14.9 0.2 2.8 3 0 0 3 3 3 2 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|292654980|ref|YP_003534877.1| - 6e-05 22.6 3.1 6e-05 22.6 0.6 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|292654980|ref|YP_003534877.1| - 0.00052 19.3 0.1 0.00089 18.6 0.1 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|292654980|ref|YP_003534877.1| - 0.00058 19.0 1.6 0.0033 16.6 0.3 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A FMO-like PF00743.19 gi|292654980|ref|YP_003534877.1| - 0.00071 18.1 0.0 0.00098 17.7 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|292654980|ref|YP_003534877.1| - 0.0017 17.7 0.2 0.0026 17.1 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|292654980|ref|YP_003534877.1| - 0.0019 17.8 0.5 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|292654980|ref|YP_003534877.1| - 0.003 17.5 0.1 0.0054 16.6 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|292654980|ref|YP_003534877.1| - 0.0043 17.5 0.0 0.018 15.5 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding CoA_transf_3 PF02515.17 gi|292654980|ref|YP_003534877.1| - 0.0063 15.7 0.1 0.0098 15.1 0.1 1.3 1 0 0 1 1 1 1 CoA-transferase family III Lycopene_cycl PF05834.12 gi|292654980|ref|YP_003534877.1| - 0.0066 15.5 2.4 0.055 12.5 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.16 gi|292654980|ref|YP_003534877.1| - 0.011 15.4 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|292654980|ref|YP_003534877.1| - 0.023 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|292654980|ref|YP_003534877.1| - 0.024 14.9 0.1 0.28 11.5 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain YjeF_N PF03853.15 gi|292654980|ref|YP_003534877.1| - 0.039 13.9 0.2 0.076 12.9 0.2 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.14 gi|292654980|ref|YP_003534877.1| - 0.042 13.4 0.2 0.083 12.5 0.2 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MCRA PF06100.11 gi|292654980|ref|YP_003534877.1| - 0.065 12.0 0.0 0.095 11.5 0.0 1.2 1 0 0 1 1 1 0 MCRA family Epimerase PF01370.21 gi|292654980|ref|YP_003534877.1| - 0.12 11.9 0.3 3.2 7.1 0.1 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Trp_halogenase PF04820.14 gi|292654980|ref|YP_003534877.1| - 0.19 10.5 1.3 0.26 10.1 0.3 1.6 2 0 0 2 2 2 0 Tryptophan halogenase GDI PF00996.18 gi|292654980|ref|YP_003534877.1| - 0.22 10.0 0.0 1 7.8 0.0 1.8 2 0 0 2 2 2 0 GDP dissociation inhibitor PALP PF00291.25 gi|292654981|ref|YP_003534878.1| - 2.6e-61 207.6 3.2 3e-61 207.4 3.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Adhesin_P1_N PF18652.1 gi|292654981|ref|YP_003534878.1| - 1.4 9.0 5.2 0.41 10.7 0.7 2.2 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain Fe_dep_repr_C PF02742.15 gi|292654982|ref|YP_003534879.1| - 4.1e-28 97.3 1.2 7.1e-28 96.5 1.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|292654982|ref|YP_003534879.1| - 4.8e-21 74.7 0.6 9.7e-21 73.7 0.3 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|292654982|ref|YP_003534879.1| - 5.3e-16 58.6 0.8 8.8e-16 57.9 0.1 1.7 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|292654982|ref|YP_003534879.1| - 1.3e-08 34.6 0.0 4.3e-08 32.9 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|292654982|ref|YP_003534879.1| - 8.9e-08 31.9 0.0 2.7e-07 30.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|292654982|ref|YP_003534879.1| - 7.7e-07 29.0 0.0 2.4e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 gi|292654982|ref|YP_003534879.1| - 3.8e-06 26.4 0.0 1.1e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 gi|292654982|ref|YP_003534879.1| - 2.9e-05 23.8 0.1 0.00013 21.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|292654982|ref|YP_003534879.1| - 7.1e-05 22.3 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|292654982|ref|YP_003534879.1| - 0.00024 21.6 0.0 0.00065 20.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|292654982|ref|YP_003534879.1| - 0.00056 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|292654982|ref|YP_003534879.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|292654982|ref|YP_003534879.1| - 0.002 18.4 0.0 0.0046 17.3 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|292654982|ref|YP_003534879.1| - 0.0046 16.8 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|292654982|ref|YP_003534879.1| - 0.0063 16.4 0.1 0.034 14.1 0.1 2.2 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|292654982|ref|YP_003534879.1| - 0.0089 16.1 0.1 0.035 14.2 0.0 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|292654982|ref|YP_003534879.1| - 0.01 15.8 0.0 0.036 14.0 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Penicillinase_R PF03965.16 gi|292654982|ref|YP_003534879.1| - 0.015 15.7 0.0 0.039 14.3 0.0 1.6 1 1 0 1 1 1 0 Penicillinase repressor Topoisom_bac PF01131.20 gi|292654982|ref|YP_003534879.1| - 0.015 14.3 0.0 0.02 13.9 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase DUF2250 PF10007.9 gi|292654982|ref|YP_003534879.1| - 0.02 15.0 0.1 0.043 13.9 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_13 PF11972.8 gi|292654982|ref|YP_003534879.1| - 0.034 14.2 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain FeoC PF09012.10 gi|292654982|ref|YP_003534879.1| - 0.041 14.0 0.0 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.12 gi|292654982|ref|YP_003534879.1| - 0.073 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r3 PF04539.16 gi|292654982|ref|YP_003534879.1| - 0.11 12.6 0.3 0.4 10.8 0.0 2.1 2 0 0 2 2 1 0 Sigma-70 region 3 HTH_36 PF13730.6 gi|292654982|ref|YP_003534879.1| - 0.23 11.5 0.0 0.39 10.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0016 PF01169.19 gi|292654983|ref|YP_003534880.1| - 1.2e-22 80.0 22.2 5.2e-14 52.3 3.9 2.7 3 0 0 3 3 3 2 Uncharacterized protein family UPF0016 LysE PF01810.18 gi|292654984|ref|YP_003534881.1| - 3.5e-22 78.8 14.3 6.8e-20 71.3 14.3 2.1 1 1 0 1 1 1 1 LysE type translocator Fe-ADH_2 PF13685.6 gi|292654985|ref|YP_003534882.1| - 4.3e-60 203.5 0.6 5.8e-60 203.1 0.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|292654985|ref|YP_003534882.1| - 3.4e-21 75.5 1.5 2.2e-20 72.8 1.5 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|292654985|ref|YP_003534882.1| - 6.2e-09 35.4 0.0 1.7e-08 33.9 0.0 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF420 PF04238.12 gi|292654986|ref|YP_003534883.1| - 5.5e-36 123.8 6.9 5.5e-36 123.8 6.9 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|292654986|ref|YP_003534883.1| - 2.7e-05 24.4 7.9 0.0018 18.5 2.2 2.2 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) Orai-1 PF07856.12 gi|292654986|ref|YP_003534883.1| - 0.0045 16.7 2.1 0.0045 16.7 2.1 1.9 2 1 1 3 3 3 1 Mediator of CRAC channel activity Cytochrom_B561 PF03188.16 gi|292654986|ref|YP_003534883.1| - 0.014 15.5 1.1 0.014 15.5 1.1 2.2 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 Tetraspanin PF00335.20 gi|292654986|ref|YP_003534883.1| - 5.3 6.7 5.8 19 4.8 0.0 2.6 2 1 0 2 2 2 0 Tetraspanin family DUF2231 PF09990.9 gi|292654986|ref|YP_003534883.1| - 6.3 7.3 13.8 0.15 12.5 3.9 2.8 2 2 0 2 2 2 0 Predicted membrane protein (DUF2231) Glycos_transf_1 PF00534.20 gi|292654987|ref|YP_003534884.1| - 7.6e-17 61.4 0.0 1.2e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|292654987|ref|YP_003534884.1| - 5.7e-15 56.1 12.5 5.7e-15 56.1 12.5 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|292654987|ref|YP_003534884.1| - 1.4e-14 54.6 0.1 2.6e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292654987|ref|YP_003534884.1| - 9.3e-14 51.8 2.0 1.9e-13 50.7 2.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|292654987|ref|YP_003534884.1| - 0.00036 20.6 0.0 0.0012 18.8 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like Copper-bind PF00127.20 gi|292654988|ref|YP_003534885.1| - 1.6e-13 50.9 0.0 3.6e-13 49.8 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Peptidase_M42 PF05343.14 gi|292654989|ref|YP_003534886.1| - 2.4e-90 302.5 1.2 2.7e-90 302.3 1.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|292654989|ref|YP_003534886.1| - 4.3e-08 33.1 0.1 9.9e-08 31.9 0.1 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|292654989|ref|YP_003534886.1| - 4.7e-08 33.0 0.4 0.00039 20.2 0.0 2.5 2 1 0 2 2 2 2 Peptidase family M28 MTH865 PF07747.11 gi|292654990|ref|YP_003534887.1| - 1.9e-31 107.6 0.4 2.2e-31 107.5 0.4 1.0 1 0 0 1 1 1 1 MTH865-like family PIP49_C PF12260.8 gi|292654991|ref|YP_003534888.1| - 0.18 11.4 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein-kinase domain of FAM69 Peptidase_S9 PF00326.21 gi|292654992|ref|YP_003534889.1| - 3.3e-44 150.9 0.0 4.8e-44 150.4 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|292654992|ref|YP_003534889.1| - 1e-13 51.5 0.0 3.3e-09 36.7 0.1 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|292654992|ref|YP_003534889.1| - 1.8e-12 47.3 0.0 4.4e-12 46.0 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.12 gi|292654992|ref|YP_003534889.1| - 4e-12 45.7 3.5 0.0023 17.8 0.1 5.9 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat Hydrolase_4 PF12146.8 gi|292654992|ref|YP_003534889.1| - 8.3e-12 44.9 0.3 6.3e-07 28.9 0.2 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|292654992|ref|YP_003534889.1| - 8.9e-12 45.2 0.2 2e-06 27.7 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 gi|292654992|ref|YP_003534889.1| - 8.3e-08 31.3 0.0 7.7e-06 24.8 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 gi|292654992|ref|YP_003534889.1| - 2.4e-05 24.4 0.0 0.0016 18.4 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 gi|292654992|ref|YP_003534889.1| - 0.0016 18.1 0.0 0.09 12.4 0.0 2.3 2 0 0 2 2 2 1 Putative esterase DPPIV_N PF00930.21 gi|292654992|ref|YP_003534889.1| - 0.0033 16.2 0.0 6 5.5 0.0 4.1 2 1 1 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_6 PF12697.7 gi|292654992|ref|YP_003534889.1| - 0.0067 17.1 3.1 0.0067 17.1 3.1 4.0 3 2 0 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|292654992|ref|YP_003534889.1| - 0.0087 15.9 0.1 0.021 14.7 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S28 PF05577.12 gi|292654992|ref|YP_003534889.1| - 0.0099 14.7 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Abhydrolase_4 PF08386.10 gi|292654992|ref|YP_003534889.1| - 0.012 15.7 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_2 PF02230.16 gi|292654992|ref|YP_003534889.1| - 0.025 14.4 0.0 4.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Esterase_phd PF10503.9 gi|292654992|ref|YP_003534889.1| - 0.17 11.4 1.0 1.1 8.6 0.1 2.5 2 1 0 2 2 2 0 Esterase PHB depolymerase B12-binding PF02310.19 gi|292654993|ref|YP_003534890.1| - 8.5e-22 77.5 0.3 9.9e-22 77.2 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain IMPDH PF00478.25 gi|292654993|ref|YP_003534890.1| - 0.082 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain BcrAD_BadFG PF01869.20 gi|292654993|ref|YP_003534890.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family MeaB PF03308.16 gi|292654994|ref|YP_003534891.1| - 7.3e-93 310.4 3.4 9.2e-93 310.1 3.4 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|292654994|ref|YP_003534891.1| - 3.8e-08 33.1 1.7 2.7e-07 30.3 1.7 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|292654994|ref|YP_003534891.1| - 1.1e-06 28.5 0.5 3.4e-06 26.8 0.5 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|292654994|ref|YP_003534891.1| - 3.1e-05 23.8 0.1 8e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|292654994|ref|YP_003534891.1| - 4.3e-05 23.4 0.3 0.0002 21.2 0.1 2.1 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|292654994|ref|YP_003534891.1| - 6e-05 23.5 0.7 0.00028 21.3 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|292654994|ref|YP_003534891.1| - 7.5e-05 22.4 0.0 0.34 10.4 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|292654994|ref|YP_003534891.1| - 0.00012 22.6 0.0 0.00022 21.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|292654994|ref|YP_003534891.1| - 0.00027 20.9 0.1 0.00063 19.7 0.1 1.6 1 0 0 1 1 1 1 NTPase CbiA PF01656.23 gi|292654994|ref|YP_003534891.1| - 0.00047 20.2 0.0 0.00069 19.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain KAP_NTPase PF07693.14 gi|292654994|ref|YP_003534891.1| - 0.00054 19.3 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 KAP family P-loop domain AAA_29 PF13555.6 gi|292654994|ref|YP_003534891.1| - 0.0028 17.4 0.2 0.0056 16.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|292654994|ref|YP_003534891.1| - 0.0035 17.6 0.1 0.014 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|292654994|ref|YP_003534891.1| - 0.0043 17.0 0.0 0.038 13.9 0.0 2.4 3 0 0 3 3 3 1 RsgA GTPase KTI12 PF08433.10 gi|292654994|ref|YP_003534891.1| - 0.005 16.3 0.3 0.02 14.3 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|292654994|ref|YP_003534891.1| - 0.0053 16.0 0.1 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.6 gi|292654994|ref|YP_003534891.1| - 0.012 16.2 0.8 0.035 14.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|292654994|ref|YP_003534891.1| - 0.013 15.7 0.5 0.033 14.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|292654994|ref|YP_003534891.1| - 0.014 15.3 0.1 0.057 13.3 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|292654994|ref|YP_003534891.1| - 0.024 14.7 0.9 0.064 13.3 0.2 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase Ploopntkinase3 PF18751.1 gi|292654994|ref|YP_003534891.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 NB-ARC PF00931.22 gi|292654994|ref|YP_003534891.1| - 0.061 12.5 0.0 0.17 11.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|292654994|ref|YP_003534891.1| - 0.063 13.4 0.1 0.16 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|292654994|ref|YP_003534891.1| - 0.08 13.3 0.4 0.22 11.9 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|292654994|ref|YP_003534891.1| - 0.1 13.0 1.7 0.31 11.4 0.1 2.5 3 0 0 3 3 2 0 AAA domain Thymidylate_kin PF02223.17 gi|292654994|ref|YP_003534891.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase PRK PF00485.18 gi|292654994|ref|YP_003534891.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|292654994|ref|YP_003534891.1| - 0.12 11.7 0.1 0.23 10.8 0.1 1.5 1 0 0 1 1 1 0 KaiC FeoB_N PF02421.18 gi|292654994|ref|YP_003534891.1| - 0.12 11.8 0.1 3.3 7.2 0.0 2.6 3 1 1 4 4 4 0 Ferrous iron transport protein B APS_kinase PF01583.20 gi|292654994|ref|YP_003534891.1| - 0.14 12.1 0.1 0.34 10.8 0.0 1.7 2 0 0 2 2 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|292654994|ref|YP_003534891.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|292654994|ref|YP_003534891.1| - 0.19 10.6 0.0 0.36 9.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Abhydrolase_6 PF12697.7 gi|292654995|ref|YP_003534892.1| - 1e-18 68.8 7.6 1.5e-18 68.2 7.6 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|292654995|ref|YP_003534892.1| - 3.7e-15 56.3 0.0 8.4e-11 42.0 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|292654995|ref|YP_003534892.1| - 4.5e-07 29.4 0.0 1.1e-06 28.1 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 YrhK PF14145.6 gi|292654996|ref|YP_003534893.1| - 0.19 11.6 4.9 0.57 10.1 4.9 1.7 1 1 0 1 1 1 0 YrhK-like protein OB_aCoA_assoc PF01796.17 gi|292654997|ref|YP_003534894.1| - 5.1e-09 36.0 3.2 7.6e-09 35.4 3.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|292654997|ref|YP_003534894.1| - 2.3e-06 27.4 1.3 3.9e-06 26.6 1.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|292654998|ref|YP_003534895.1| - 6.6e-27 94.5 0.4 1e-26 93.9 0.4 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|292654998|ref|YP_003534895.1| - 5.3e-09 35.8 0.2 1.1e-08 34.8 0.2 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|292654998|ref|YP_003534895.1| - 4.4e-07 29.7 2.3 4.4e-07 29.7 2.3 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|292654998|ref|YP_003534895.1| - 0.0029 17.6 0.4 0.14 12.1 0.0 2.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|292654998|ref|YP_003534895.1| - 0.022 14.6 1.9 0.59 10.0 0.5 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M28 PF04389.17 gi|292654999|ref|YP_003534896.1| - 6.4e-35 120.6 0.6 8.8e-35 120.2 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|292654999|ref|YP_003534896.1| - 3.8e-15 55.7 0.8 6.8e-15 54.9 0.1 1.8 2 0 0 2 2 2 1 PA domain Peptidase_M20 PF01546.28 gi|292654999|ref|YP_003534896.1| - 2.4e-05 24.1 2.6 0.00026 20.7 2.6 2.2 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|292654999|ref|YP_003534896.1| - 8.5e-05 21.7 0.3 0.00014 21.0 0.3 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.15 gi|292654999|ref|YP_003534896.1| - 0.093 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Nicastrin NAD_kinase PF01513.21 gi|292655000|ref|YP_003534897.1| - 4.5e-09 35.9 1.6 5.9e-09 35.5 0.2 1.7 2 0 0 2 2 2 1 ATP-NAD kinase GPI2 PF06432.11 gi|292655003|ref|YP_003534900.1| - 2.5 7.5 4.5 3.2 7.1 4.5 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase MHYT PF03707.16 gi|292655003|ref|YP_003534900.1| - 9.4 6.5 14.8 3.3 8.0 4.9 2.4 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat Cytochrom_B_C PF00032.17 gi|292655004|ref|YP_003534901.1| - 3.8e-10 40.0 0.5 8e-10 38.9 0.4 1.6 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MARVEL PF01284.23 gi|292655004|ref|YP_003534901.1| - 0.11 12.5 4.8 0.23 11.5 4.8 1.7 1 1 0 1 1 1 0 Membrane-associating domain DUF2214 PF09980.9 gi|292655004|ref|YP_003534901.1| - 0.15 11.9 1.3 0.28 11.0 1.1 1.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2214) Cytochrome_B PF00033.19 gi|292655005|ref|YP_003534902.1| - 9.2e-47 159.3 15.8 1.3e-46 158.9 15.8 1.1 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|292655005|ref|YP_003534902.1| - 5.2e-42 143.7 10.1 4.1e-41 140.8 10.0 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|292655005|ref|YP_003534902.1| - 0.00036 21.0 1.5 0.00036 21.0 1.5 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|292655005|ref|YP_003534902.1| - 0.011 15.3 2.6 0.011 15.3 2.6 2.3 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 DUF373 PF04123.13 gi|292655005|ref|YP_003534902.1| - 0.032 13.7 2.7 0.048 13.1 2.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) VMA21 PF09446.10 gi|292655006|ref|YP_003534903.1| - 0.22 11.7 8.1 0.091 12.9 2.0 2.1 1 1 1 2 2 2 0 VMA21-like domain Copper-bind PF00127.20 gi|292655007|ref|YP_003534904.1| - 1.2e-13 51.3 0.0 3.1e-13 50.0 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|292655007|ref|YP_003534904.1| - 0.014 15.2 11.0 0.014 15.2 11.0 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF2267 PF10025.9 gi|292655008|ref|YP_003534905.1| - 0.054 13.8 1.2 0.074 13.3 0.5 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) PepSY_TM PF03929.16 gi|292655010|ref|YP_003534907.1| - 0.13 11.9 2.7 0.3 10.7 2.0 1.9 1 1 0 1 1 1 0 PepSY-associated TM region DUF202 PF02656.15 gi|292655010|ref|YP_003534907.1| - 3 8.4 8.5 0.43 11.1 2.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) HhH-GPD PF00730.25 gi|292655011|ref|YP_003534908.1| - 8.9e-23 80.8 0.0 1.2e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|292655011|ref|YP_003534908.1| - 3.3e-07 29.8 0.2 9.8e-07 28.3 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|292655011|ref|YP_003534908.1| - 7.3e-05 23.0 5.7 0.00013 22.2 5.7 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|292655011|ref|YP_003534908.1| - 0.043 14.4 0.5 0.93 10.1 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S13 PF00416.22 gi|292655011|ref|YP_003534908.1| - 0.074 13.4 0.2 0.32 11.4 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S13/S18 HHH_8 PF14716.6 gi|292655011|ref|YP_003534908.1| - 0.082 13.3 0.1 0.2 12.0 0.0 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain HrcA_DNA-bdg PF03444.15 gi|292655011|ref|YP_003534908.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF3349 PF11829.8 gi|292655011|ref|YP_003534908.1| - 0.13 13.1 0.1 0.3 11.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) TCR_zetazeta PF11628.8 gi|292655012|ref|YP_003534909.1| - 0.049 13.3 0.9 0.063 13.0 0.9 1.3 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain AAA PF00004.29 gi|292655013|ref|YP_003534910.1| - 1.2e-45 155.2 0.0 1.2e-45 155.2 0.0 2.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292655013|ref|YP_003534910.1| - 2e-13 49.9 0.9 6.2e-13 48.3 0.9 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|292655013|ref|YP_003534910.1| - 8.5e-10 39.0 0.2 5.5e-09 36.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|292655013|ref|YP_003534910.1| - 1.4e-07 31.6 0.3 1.9e-06 27.9 0.3 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|292655013|ref|YP_003534910.1| - 6.8e-07 29.2 0.0 1.5e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|292655013|ref|YP_003534910.1| - 6.2e-06 26.5 0.3 0.00056 20.2 0.0 2.7 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292655013|ref|YP_003534910.1| - 1e-05 26.0 3.7 0.00047 20.6 0.0 3.2 2 2 1 3 3 3 1 AAA ATPase domain AAA_17 PF13207.6 gi|292655013|ref|YP_003534910.1| - 1.1e-05 25.9 4.6 0.045 14.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|292655013|ref|YP_003534910.1| - 6.7e-05 22.2 0.0 0.00014 21.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Prot_ATP_ID_OB PF16450.5 gi|292655013|ref|YP_003534910.1| - 8.5e-05 22.4 0.1 0.0002 21.3 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_18 PF13238.6 gi|292655013|ref|YP_003534910.1| - 0.00014 22.4 1.4 0.0026 18.3 0.0 3.0 3 2 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|292655013|ref|YP_003534910.1| - 0.00019 21.5 0.4 0.0019 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|292655013|ref|YP_003534910.1| - 0.001 18.5 0.0 0.0032 16.9 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|292655013|ref|YP_003534910.1| - 0.0024 17.6 0.1 0.03 14.0 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain GrpE PF01025.19 gi|292655013|ref|YP_003534910.1| - 0.0027 17.4 12.3 0.003 17.2 10.4 2.0 2 1 0 2 2 1 1 GrpE IstB_IS21 PF01695.17 gi|292655013|ref|YP_003534910.1| - 0.0032 17.2 0.2 0.0089 15.8 0.0 1.8 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|292655013|ref|YP_003534910.1| - 0.0035 17.1 0.1 0.0035 17.1 0.1 3.0 3 1 0 3 3 3 1 AAA domain TIP49 PF06068.13 gi|292655013|ref|YP_003534910.1| - 0.0036 16.6 3.1 0.0047 16.2 0.1 2.3 2 2 0 2 2 2 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|292655013|ref|YP_003534910.1| - 0.0039 17.6 0.0 0.012 16.0 0.0 1.9 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.6 gi|292655013|ref|YP_003534910.1| - 0.0054 17.0 0.8 0.014 15.7 0.0 2.2 3 1 0 3 3 1 1 AAA domain AAA_33 PF13671.6 gi|292655013|ref|YP_003534910.1| - 0.0066 16.6 0.2 0.027 14.6 0.0 2.2 2 1 1 3 3 1 1 AAA domain AAA_3 PF07726.11 gi|292655013|ref|YP_003534910.1| - 0.0067 16.3 0.6 0.071 13.0 0.0 2.9 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|292655013|ref|YP_003534910.1| - 0.0069 16.3 0.1 0.08 12.9 0.1 2.6 1 1 0 1 1 1 1 NACHT domain AAA_7 PF12775.7 gi|292655013|ref|YP_003534910.1| - 0.0082 15.7 0.4 0.024 14.2 0.0 2.0 2 1 0 2 2 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|292655013|ref|YP_003534910.1| - 0.014 14.9 7.2 0.2 11.2 0.1 3.6 1 1 1 3 3 3 0 AAA domain DUF2334 PF10096.9 gi|292655013|ref|YP_003534910.1| - 0.015 14.9 0.1 0.026 14.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) TsaE PF02367.17 gi|292655013|ref|YP_003534910.1| - 0.022 14.8 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Creatininase PF02633.14 gi|292655013|ref|YP_003534910.1| - 0.029 13.8 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase Parvo_NS1 PF01057.17 gi|292655013|ref|YP_003534910.1| - 0.036 13.2 0.0 0.08 12.0 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|292655013|ref|YP_003534910.1| - 0.052 13.7 0.1 0.25 11.5 0.0 2.1 2 0 0 2 2 1 0 Sigma-54 interaction domain ATPase PF06745.13 gi|292655013|ref|YP_003534910.1| - 0.06 12.7 8.1 0.31 10.4 0.0 3.3 2 1 0 3 3 3 0 KaiC Atg14 PF10186.9 gi|292655013|ref|YP_003534910.1| - 0.074 12.1 1.8 0.11 11.6 1.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|292655013|ref|YP_003534910.1| - 0.087 12.9 12.6 0.23 11.6 2.0 2.8 1 1 1 2 2 2 0 bZIP transcription factor Fmp27_WPPW PF10359.9 gi|292655013|ref|YP_003534910.1| - 0.088 11.6 7.9 0.18 10.6 7.9 1.5 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ATPase_2 PF01637.18 gi|292655013|ref|YP_003534910.1| - 0.12 12.3 5.1 0.65 9.9 0.0 3.3 3 1 0 4 4 4 0 ATPase domain predominantly from Archaea SHE3 PF17078.5 gi|292655013|ref|YP_003534910.1| - 0.13 12.0 10.2 0.22 11.2 10.2 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Cep57_CLD_2 PF14197.6 gi|292655013|ref|YP_003534910.1| - 0.14 12.3 10.0 0.42 10.7 10.0 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 NTPase_1 PF03266.15 gi|292655013|ref|YP_003534910.1| - 0.17 11.8 5.6 1 9.2 0.1 3.5 2 2 1 4 4 4 0 NTPase AAA_11 PF13086.6 gi|292655013|ref|YP_003534910.1| - 0.2 11.4 0.1 0.2 11.4 0.1 2.4 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|292655013|ref|YP_003534910.1| - 0.48 10.9 0.0 0.48 10.9 0.0 2.7 2 1 0 2 2 1 0 ABC transporter Mgr1 PF08602.10 gi|292655013|ref|YP_003534910.1| - 1.5 7.6 5.8 0.62 8.8 3.3 1.6 2 0 0 2 2 1 0 Mgr1-like, i-AAA protease complex subunit DUF4407 PF14362.6 gi|292655013|ref|YP_003534910.1| - 1.5 8.1 5.7 3 7.1 5.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) SlyX PF04102.12 gi|292655013|ref|YP_003534910.1| - 3 8.5 10.3 12 6.6 8.5 2.9 2 1 0 2 2 1 0 SlyX ADIP PF11559.8 gi|292655013|ref|YP_003534910.1| - 3 7.9 13.2 0.28 11.2 8.2 1.7 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding APG6_N PF17675.1 gi|292655013|ref|YP_003534910.1| - 3.3 8.2 15.1 0.19 12.3 8.5 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region GAS PF13851.6 gi|292655013|ref|YP_003534910.1| - 3.5 6.9 16.4 7.8 5.8 16.4 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|292655013|ref|YP_003534910.1| - 6 7.4 8.3 53 4.4 5.0 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|292655013|ref|YP_003534910.1| - 6 7.6 12.7 96 3.7 0.0 3.0 1 1 2 3 3 3 0 Initiation control protein YabA GIT_CC PF16559.5 gi|292655013|ref|YP_003534910.1| - 8 6.4 9.6 12 5.8 1.8 2.9 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor HTH_24 PF13412.6 gi|292655014|ref|YP_003534911.1| - 1.5e-06 27.7 0.0 2.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292655014|ref|YP_003534911.1| - 7.4e-05 22.6 0.8 7.9e-05 22.5 0.0 1.5 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|292655014|ref|YP_003534911.1| - 9.3e-05 22.3 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|292655014|ref|YP_003534911.1| - 0.00028 20.5 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|292655014|ref|YP_003534911.1| - 0.0026 17.4 0.0 0.0062 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|292655014|ref|YP_003534911.1| - 0.0037 17.1 0.0 0.0058 16.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|292655014|ref|YP_003534911.1| - 0.0075 16.2 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|292655014|ref|YP_003534911.1| - 0.011 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|292655014|ref|YP_003534911.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|292655014|ref|YP_003534911.1| - 0.014 15.5 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|292655014|ref|YP_003534911.1| - 0.025 14.9 0.0 0.032 14.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|292655014|ref|YP_003534911.1| - 0.028 14.2 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Hexapep_2 PF14602.6 gi|292655015|ref|YP_003534912.1| - 0.3 10.9 3.0 2.3 8.0 2.4 2.3 1 1 1 2 2 2 0 Hexapeptide repeat of succinyl-transferase Metallophos_2 PF12850.7 gi|292655016|ref|YP_003534913.1| - 1.2e-12 48.4 0.1 2.3e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292655016|ref|YP_003534913.1| - 4e-11 43.8 3.3 7.2e-11 43.0 3.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Asp-B-Hydro_N PF05279.11 gi|292655016|ref|YP_003534913.1| - 0.42 10.6 15.0 0.64 10.0 15.0 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region AAA_23 PF13476.6 gi|292655017|ref|YP_003534914.1| - 1.5e-24 87.6 0.2 1.5e-24 87.6 0.2 6.0 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|292655017|ref|YP_003534914.1| - 9.9e-14 51.8 0.0 1.5e-12 48.0 0.0 3.0 2 2 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|292655017|ref|YP_003534914.1| - 4.1e-12 46.0 41.4 2.3e-11 43.6 41.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 gi|292655017|ref|YP_003534914.1| - 2.1e-08 32.2 87.9 3.3e-06 25.0 40.6 3.1 3 0 0 3 3 3 3 Protein of unknown function (DUF3584) AAA_27 PF13514.6 gi|292655017|ref|YP_003534914.1| - 3.3e-06 26.8 0.0 3.3e-06 26.8 0.0 5.8 5 1 0 6 6 6 1 AAA domain AAA_29 PF13555.6 gi|292655017|ref|YP_003534914.1| - 6.1e-06 25.9 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|292655017|ref|YP_003534914.1| - 2.9e-05 24.0 20.9 0.01 15.7 0.0 4.1 3 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Baculo_PEP_C PF04513.12 gi|292655017|ref|YP_003534914.1| - 0.0001 22.4 14.0 0.0015 18.6 1.7 5.3 5 1 1 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran PF00005.27 gi|292655017|ref|YP_003534914.1| - 0.00055 20.5 6.7 0.22 12.0 0.0 4.7 3 2 0 3 3 3 1 ABC transporter TMF_TATA_bd PF12325.8 gi|292655017|ref|YP_003534914.1| - 0.0037 17.5 11.8 0.0037 17.5 11.8 7.3 3 3 3 7 7 5 1 TATA element modulatory factor 1 TATA binding MukB PF04310.12 gi|292655017|ref|YP_003534914.1| - 0.039 13.8 0.7 1.5 8.6 0.0 3.0 2 1 0 2 2 2 0 MukB N-terminal FIVAR PF07554.13 gi|292655017|ref|YP_003534914.1| - 0.066 14.0 5.6 0.098 13.4 2.0 3.2 2 0 0 2 2 2 0 FIVAR domain DNA_ligase_ZBD PF03119.16 gi|292655017|ref|YP_003534914.1| - 0.25 11.4 0.7 1.1 9.4 0.7 2.2 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain BLOC1_2 PF10046.9 gi|292655017|ref|YP_003534914.1| - 0.36 11.2 36.1 0.17 12.2 6.4 6.6 4 3 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|292655017|ref|YP_003534914.1| - 0.6 10.2 36.9 0.26 11.3 0.2 6.7 2 2 4 7 7 7 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|292655017|ref|YP_003534914.1| - 0.82 10.2 24.2 0.87 10.1 0.1 6.2 4 1 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|292655017|ref|YP_003534914.1| - 3.9 7.7 25.0 0.13 12.4 3.4 4.9 2 2 2 6 6 6 0 Fibrinogen alpha/beta chain family DNA_pol_B PF00136.21 gi|292655021|ref|YP_003534918.1| - 6.2e-41 140.6 0.0 5.9e-28 97.8 0.0 2.1 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|292655021|ref|YP_003534918.1| - 3.2e-29 102.1 0.0 3.6e-28 98.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain Intein_splicing PF14890.6 gi|292655021|ref|YP_003534918.1| - 3.1e-08 33.6 3.8 1.5e-07 31.4 0.5 3.2 2 1 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|292655021|ref|YP_003534918.1| - 0.032 14.5 0.2 2 8.8 0.0 2.7 2 0 0 2 2 2 0 LAGLIDADG-like domain DNA_pol_B_2 PF03175.13 gi|292655021|ref|YP_003534918.1| - 0.041 12.7 0.0 0.56 9.0 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral ELK PF03789.13 gi|292655021|ref|YP_003534918.1| - 0.097 12.8 0.3 2.9 8.1 0.1 2.4 2 0 0 2 2 2 0 ELK domain ABC_tran PF00005.27 gi|292655022|ref|YP_003534919.1| - 9.5e-15 55.3 0.0 3.7e-14 53.4 0.0 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|292655022|ref|YP_003534919.1| - 1.1e-05 25.0 1.0 0.031 13.7 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|292655022|ref|YP_003534919.1| - 0.00019 21.4 0.6 0.048 13.5 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|292655022|ref|YP_003534919.1| - 0.0026 18.2 0.1 2.1 8.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|292655022|ref|YP_003534919.1| - 0.0038 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|292655022|ref|YP_003534919.1| - 0.012 15.7 0.1 2.4 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|292655022|ref|YP_003534919.1| - 0.056 13.7 0.0 1.6 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|292655022|ref|YP_003534919.1| - 0.083 12.5 0.2 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|292655022|ref|YP_003534919.1| - 0.093 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|292655022|ref|YP_003534919.1| - 0.095 13.2 0.0 0.26 11.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|292655022|ref|YP_003534919.1| - 0.11 11.1 0.1 0.14 10.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|292655022|ref|YP_003534919.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|292655022|ref|YP_003534919.1| - 0.16 12.5 2.8 0.5 10.8 0.1 2.2 1 1 1 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|292655023|ref|YP_003534920.1| - 1.8e-72 243.6 0.7 2.4e-72 243.2 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|292655024|ref|YP_003534921.1| - 1.9e-64 217.3 0.9 2.3e-64 217.1 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF445 PF04286.12 gi|292655025|ref|YP_003534922.1| - 0.011 15.5 0.3 0.013 15.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Get5_C PF18514.1 gi|292655025|ref|YP_003534922.1| - 0.02 14.6 0.1 2.5 7.9 0.0 2.6 2 0 0 2 2 2 0 Get5 C-terminal domain DUF892 PF05974.12 gi|292655025|ref|YP_003534922.1| - 0.027 14.5 5.1 0.24 11.4 5.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF892) Mre11_DNA_bind PF04152.14 gi|292655025|ref|YP_003534922.1| - 0.037 14.3 0.2 0.044 14.1 0.2 1.2 1 0 0 1 1 1 0 Mre11 DNA-binding presumed domain NusB PF01029.18 gi|292655025|ref|YP_003534922.1| - 0.045 14.0 0.6 0.071 13.4 0.1 1.6 2 0 0 2 2 2 0 NusB family Rubrerythrin PF02915.17 gi|292655025|ref|YP_003534922.1| - 0.046 14.1 6.5 0.05 14.0 5.5 1.7 1 1 0 1 1 1 0 Rubrerythrin PAS_7 PF12860.7 gi|292655025|ref|YP_003534922.1| - 0.064 13.4 0.4 0.16 12.1 0.1 1.8 1 1 1 2 2 2 0 PAS fold Ferritin_2 PF13668.6 gi|292655025|ref|YP_003534922.1| - 0.19 12.0 7.1 0.17 12.1 1.2 2.0 1 1 1 2 2 2 0 Ferritin-like domain Fe_dep_repress PF01325.19 gi|292655026|ref|YP_003534923.1| - 1.8e-17 63.2 0.3 1.4e-16 60.5 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|292655026|ref|YP_003534923.1| - 9.5e-09 35.2 0.0 2.9e-08 33.7 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|292655026|ref|YP_003534923.1| - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|292655026|ref|YP_003534923.1| - 0.0009 19.2 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|292655026|ref|YP_003534923.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|292655026|ref|YP_003534923.1| - 0.0015 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|292655026|ref|YP_003534923.1| - 0.012 16.1 0.0 0.024 15.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|292655026|ref|YP_003534923.1| - 0.014 14.9 0.0 0.038 13.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|292655026|ref|YP_003534923.1| - 0.05 13.3 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|292655026|ref|YP_003534923.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DDE_Tnp_1 PF01609.21 gi|292655027|ref|YP_003534924.1| - 1.8e-19 70.3 0.0 2.6e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|292655027|ref|YP_003534924.1| - 0.0017 18.6 0.0 0.0037 17.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain CI-B14_5a PF07347.12 gi|292655027|ref|YP_003534924.1| - 0.09 12.7 0.1 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) Methyltransf_21 PF05050.12 gi|292655028|ref|YP_003534925.1| - 2.8e-20 73.1 0.0 3.6e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|292655028|ref|YP_003534925.1| - 9.8e-09 34.9 0.0 1.2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|292655028|ref|YP_003534925.1| - 2e-06 27.7 0.0 2.9e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|292655028|ref|YP_003534925.1| - 5.7e-05 23.7 0.0 0.00012 22.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|292655028|ref|YP_003534925.1| - 0.00011 21.8 0.1 0.00019 21.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|292655028|ref|YP_003534925.1| - 0.00034 20.1 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_31 PF13847.6 gi|292655028|ref|YP_003534925.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|292655028|ref|YP_003534925.1| - 0.003 17.3 0.0 0.0049 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|292655028|ref|YP_003534925.1| - 0.004 17.1 0.0 0.0064 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292655028|ref|YP_003534925.1| - 0.0044 17.7 0.0 0.0082 16.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|292655028|ref|YP_003534925.1| - 0.008 15.1 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_23 PF13489.6 gi|292655028|ref|YP_003534925.1| - 0.014 15.3 0.0 0.1 12.4 0.0 2.2 2 1 1 3 3 3 0 Methyltransferase domain PrmA PF06325.13 gi|292655028|ref|YP_003534925.1| - 0.02 14.3 0.4 0.032 13.6 0.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|292655028|ref|YP_003534925.1| - 0.029 15.0 0.0 0.053 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|292655028|ref|YP_003534925.1| - 0.035 13.8 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase PRMT5 PF05185.16 gi|292655028|ref|YP_003534925.1| - 0.039 13.8 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltr_RsmB-F PF01189.17 gi|292655028|ref|YP_003534925.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F GidB PF02527.15 gi|292655028|ref|YP_003534925.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G tRNA-synt_2c PF01411.19 gi|292655029|ref|YP_003534926.1| - 1.1e-10 40.7 0.0 1.4e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|292655029|ref|YP_003534926.1| - 1.5e-08 34.6 0.1 2.4e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain HD PF01966.22 gi|292655030|ref|YP_003534927.1| - 1.1e-16 61.1 1.2 2.5e-16 60.0 0.4 1.8 2 0 0 2 2 2 1 HD domain TraI_2 PF07514.11 gi|292655030|ref|YP_003534927.1| - 0.056 12.4 0.0 0.1 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative helicase Epimerase PF01370.21 gi|292655031|ref|YP_003534928.1| - 1.8e-31 109.4 0.1 2e-29 102.8 0.1 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292655031|ref|YP_003534928.1| - 3.3e-10 39.9 0.2 4.7e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|292655031|ref|YP_003534928.1| - 6.8e-09 35.1 0.0 7.4e-07 28.4 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|292655031|ref|YP_003534928.1| - 1.5e-08 34.8 0.1 2.9e-08 33.8 0.1 1.7 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|292655031|ref|YP_003534928.1| - 1.9e-05 24.0 0.1 0.00015 21.0 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|292655031|ref|YP_003534928.1| - 0.00012 21.3 0.0 0.18 10.9 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|292655031|ref|YP_003534928.1| - 0.038 13.4 0.0 0.087 12.3 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.13 gi|292655031|ref|YP_003534928.1| - 0.054 13.0 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family TrkA_N PF02254.18 gi|292655031|ref|YP_003534928.1| - 0.063 13.5 0.0 0.19 12.0 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain Glyco_trans_4_2 PF13477.6 gi|292655031|ref|YP_003534928.1| - 0.23 11.5 0.0 0.55 10.3 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like GATase_2 PF00310.21 gi|292655032|ref|YP_003534929.1| - 1.6e-157 524.6 0.0 2.2e-157 524.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|292655032|ref|YP_003534929.1| - 8e-150 499.0 0.3 2.7e-148 494.0 0.0 2.2 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|292655032|ref|YP_003534929.1| - 2.5e-115 384.8 0.0 6.7e-115 383.4 0.0 1.7 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|292655032|ref|YP_003534929.1| - 9.9e-78 260.1 7.3 2.1e-77 259.0 7.3 1.5 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|292655032|ref|YP_003534929.1| - 0.064 12.6 2.2 0.085 12.2 0.3 1.9 2 0 0 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.18 gi|292655032|ref|YP_003534929.1| - 0.51 9.3 7.8 0.15 11.0 0.6 3.1 4 0 0 4 4 4 0 FMN-dependent dehydrogenase ProRS-C_1 PF09180.11 gi|292655033|ref|YP_003534930.1| - 1.5e-21 76.4 0.2 3.9e-21 75.0 0.2 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 gi|292655033|ref|YP_003534930.1| - 1.9e-21 76.0 1.4 2.3e-21 75.7 0.2 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|292655033|ref|YP_003534930.1| - 3e-18 66.4 0.0 7.9e-18 65.0 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) TIR_2 PF13676.6 gi|292655033|ref|YP_003534930.1| - 0.24 12.0 1.3 4.1 8.1 0.1 2.7 3 0 0 3 3 3 0 TIR domain KH_7 PF17214.3 gi|292655037|ref|YP_003534934.1| - 8.6e-32 108.9 1.3 6e-30 103.0 0.3 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|292655037|ref|YP_003534934.1| - 1.2e-20 73.8 0.0 2.3e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|292655037|ref|YP_003534934.1| - 6.7e-17 61.2 0.0 2.2e-16 59.5 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|292655037|ref|YP_003534934.1| - 2.9e-12 47.0 2.4 1.2e-11 45.1 2.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|292655037|ref|YP_003534934.1| - 1.1e-11 44.5 0.0 1.8e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|292655037|ref|YP_003534934.1| - 2e-08 34.0 0.1 3.6e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|292655037|ref|YP_003534934.1| - 1.2e-07 31.5 0.0 4.3e-06 26.5 0.0 2.5 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|292655037|ref|YP_003534934.1| - 0.00083 19.3 0.4 0.0017 18.3 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|292655037|ref|YP_003534934.1| - 0.012 15.4 0.0 0.064 13.1 0.0 2.3 2 0 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|292655037|ref|YP_003534934.1| - 0.037 13.9 0.1 0.092 12.6 0.1 1.6 1 0 0 1 1 1 0 KH domain Pilin_N PF07790.11 gi|292655038|ref|YP_003534935.1| - 5.5e-07 30.4 7.6 1.2e-06 29.3 5.5 2.1 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal MGS PF02142.22 gi|292655039|ref|YP_003534936.1| - 1.1e-13 51.1 0.0 1.3e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain HhH-GPD PF00730.25 gi|292655041|ref|YP_003534938.1| - 1.1e-18 67.7 0.0 1.5e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|292655041|ref|YP_003534938.1| - 1.1e-05 25.7 6.6 2.5e-05 24.5 6.6 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|292655041|ref|YP_003534938.1| - 0.0022 17.8 0.0 0.011 15.5 0.0 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|292655041|ref|YP_003534938.1| - 0.031 14.9 0.0 0.11 13.1 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain PRiA4_ORF3 PF07929.11 gi|292655041|ref|YP_003534938.1| - 0.045 13.5 0.2 0.19 11.4 0.1 2.0 2 0 0 2 2 2 0 Plasmid pRiA4b ORF-3-like protein DUF2400 PF09674.10 gi|292655041|ref|YP_003534938.1| - 0.18 11.8 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF371 PF04027.13 gi|292655042|ref|YP_003534939.1| - 3e-52 176.1 0.2 3.4e-52 175.9 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF948 PF06103.11 gi|292655043|ref|YP_003534940.1| - 1.3 9.4 18.8 23 5.3 2.9 3.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Peptidase_S49 PF01343.18 gi|292655044|ref|YP_003534941.1| - 5.5e-40 136.8 0.0 8.5e-40 136.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|292655044|ref|YP_003534941.1| - 0.00094 18.3 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF2157 PF09925.9 gi|292655044|ref|YP_003534941.1| - 0.065 13.0 1.9 0.11 12.3 1.9 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) CLP_protease PF00574.23 gi|292655044|ref|YP_003534941.1| - 0.1 12.5 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Clp protease Cytidylate_kin PF02224.18 gi|292655044|ref|YP_003534941.1| - 0.15 11.8 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase ECH_1 PF00378.20 gi|292655044|ref|YP_003534941.1| - 0.23 10.7 1.7 9.6 5.4 0.0 3.1 3 0 0 3 3 3 0 Enoyl-CoA hydratase/isomerase PsbY PF06298.11 gi|292655044|ref|YP_003534941.1| - 2.3 8.2 8.0 4.4 7.3 8.0 1.4 1 0 0 1 1 1 0 Photosystem II protein Y (PsbY) Phage_holin_5_2 PF16079.5 gi|292655044|ref|YP_003534941.1| - 4.9 7.6 5.0 0.78 10.1 1.1 1.6 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF373 PF04123.13 gi|292655045|ref|YP_003534942.1| - 7.2e-113 377.4 4.2 8.2e-113 377.2 4.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF996 PF06195.13 gi|292655045|ref|YP_003534942.1| - 0.12 12.7 2.4 0.17 12.2 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF996) Aldo_ket_red PF00248.21 gi|292655047|ref|YP_003534944.1| - 4.7e-60 203.3 0.2 1.8e-48 165.2 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family IP_trans PF02121.18 gi|292655047|ref|YP_003534944.1| - 0.013 15.1 0.1 0.088 12.4 0.0 2.0 2 0 0 2 2 2 0 Phosphatidylinositol transfer protein zinc_ribbon_4 PF13717.6 gi|292655048|ref|YP_003534945.1| - 0.02 14.8 0.6 1.5 8.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|292655048|ref|YP_003534945.1| - 0.021 14.7 0.7 1.4 8.9 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|292655048|ref|YP_003534945.1| - 0.025 14.4 0.6 7.3 6.5 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NCD3G PF07562.14 gi|292655048|ref|YP_003534945.1| - 0.051 13.6 0.2 0.057 13.4 0.2 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zinc_ribbon_5 PF13719.6 gi|292655048|ref|YP_003534945.1| - 0.062 13.1 0.2 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292655048|ref|YP_003534945.1| - 0.077 13.1 1.7 0.19 11.9 1.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|292655048|ref|YP_003534945.1| - 0.082 12.6 1.4 0.27 10.9 1.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|292655048|ref|YP_003534945.1| - 0.089 12.2 1.9 9.2 5.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TPP_enzyme_C PF02775.21 gi|292655050|ref|YP_003534947.1| - 6.8e-31 107.1 0.5 1e-30 106.6 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|292655050|ref|YP_003534947.1| - 7.8e-19 67.6 0.8 1.6e-18 66.6 0.8 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|292655051|ref|YP_003534948.1| - 1.7e-58 198.1 0.3 2.7e-58 197.4 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|292655051|ref|YP_003534948.1| - 2.4e-41 141.7 0.5 5.5e-41 140.6 0.5 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|292655051|ref|YP_003534948.1| - 1.8e-05 24.4 0.4 3.9e-05 23.3 0.4 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|292655051|ref|YP_003534948.1| - 0.0014 18.9 0.0 0.0034 17.7 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|292655051|ref|YP_003534948.1| - 0.091 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain FAD_binding_6 PF00970.24 gi|292655052|ref|YP_003534949.1| - 1e-10 41.8 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain GARS_N PF02844.15 gi|292655052|ref|YP_003534949.1| - 0.0031 18.3 0.1 0.066 14.0 0.0 2.2 1 1 1 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain Iron_transport PF10634.9 gi|292655052|ref|YP_003534949.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Fe2+ transport protein ABC2_membrane_2 PF12679.7 gi|292655053|ref|YP_003534950.1| - 4.2e-09 36.1 21.5 5.8e-08 32.3 21.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|292655053|ref|YP_003534950.1| - 2.6e-06 27.0 5.8 6.5e-06 25.7 5.8 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|292655053|ref|YP_003534950.1| - 2.4e-05 23.6 6.3 3e-05 23.3 6.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|292655054|ref|YP_003534951.1| - 2.3e-28 99.4 0.0 3.1e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655054|ref|YP_003534951.1| - 6.6e-17 62.3 0.0 7.5e-09 35.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|292655054|ref|YP_003534951.1| - 1.6e-05 24.7 0.2 2.8e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292655054|ref|YP_003534951.1| - 3.7e-05 23.4 0.0 7.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|292655054|ref|YP_003534951.1| - 0.00026 21.4 0.1 0.00047 20.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292655054|ref|YP_003534951.1| - 0.00048 20.4 0.0 0.0077 16.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|292655054|ref|YP_003534951.1| - 0.0012 19.4 0.0 0.0016 18.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292655054|ref|YP_003534951.1| - 0.0015 18.7 0.0 0.0022 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292655054|ref|YP_003534951.1| - 0.0015 18.0 0.0 0.052 13.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292655054|ref|YP_003534951.1| - 0.0036 17.1 0.0 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|292655054|ref|YP_003534951.1| - 0.007 16.6 1.1 2.4 8.5 0.0 3.9 3 1 1 4 4 3 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|292655054|ref|YP_003534951.1| - 0.0097 16.2 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|292655054|ref|YP_003534951.1| - 0.011 15.3 1.2 0.023 14.3 0.6 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|292655054|ref|YP_003534951.1| - 0.036 14.0 0.0 0.055 13.4 0.0 1.2 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|292655054|ref|YP_003534951.1| - 0.043 13.7 0.1 0.077 12.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|292655054|ref|YP_003534951.1| - 0.066 13.3 0.1 0.2 11.8 0.1 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|292655054|ref|YP_003534951.1| - 0.073 13.6 0.1 0.16 12.6 0.0 1.5 2 0 0 2 2 1 0 AAA domain cobW PF02492.19 gi|292655054|ref|YP_003534951.1| - 0.081 12.5 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|292655054|ref|YP_003534951.1| - 0.11 11.1 0.0 1.4 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|292655054|ref|YP_003534951.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|292655054|ref|YP_003534951.1| - 0.16 12.0 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NosD PF05048.13 gi|292655055|ref|YP_003534952.1| - 1.8e-31 109.3 0.0 7.2e-29 100.7 0.0 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|292655055|ref|YP_003534952.1| - 1.6e-15 57.3 1.1 5.3e-12 45.9 0.0 2.2 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|292655055|ref|YP_003534952.1| - 1.1e-14 54.9 0.0 2.5e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.7 gi|292655055|ref|YP_003534952.1| - 3.5e-10 40.1 2.6 3.6e-07 30.2 0.2 2.7 2 1 0 2 2 2 2 Pectate lyase superfamily protein DUF1565 PF07602.11 gi|292655055|ref|YP_003534952.1| - 0.00037 19.9 1.4 0.03 13.7 1.4 3.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) MM_CoA_mutase PF01642.22 gi|292655056|ref|YP_003534953.1| - 3.5e-212 705.5 0.0 4e-212 705.3 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|292655056|ref|YP_003534953.1| - 0.0009 17.8 0.0 0.0014 17.2 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) AMP-binding PF00501.28 gi|292655057|ref|YP_003534954.1| - 3e-90 302.9 0.0 3.6e-90 302.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655057|ref|YP_003534954.1| - 1.8e-22 80.1 1.1 4.4e-22 78.8 1.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|292655057|ref|YP_003534954.1| - 6.3e-16 58.0 2.7 6.3e-16 58.0 2.7 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|292655059|ref|YP_003534956.1| - 4.5e-94 315.4 0.5 5.3e-94 315.2 0.5 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655059|ref|YP_003534956.1| - 3.9e-22 79.0 0.3 1.2e-21 77.4 0.3 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Peripla_BP_6 PF13458.6 gi|292655062|ref|YP_003534959.1| - 3.5e-65 220.9 9.6 4.7e-65 220.5 9.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|292655062|ref|YP_003534959.1| - 2.6e-16 59.6 3.3 4.7e-16 58.7 3.3 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|292655062|ref|YP_003534959.1| - 3.3e-06 26.5 0.0 4.9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|292655062|ref|YP_003534959.1| - 3.5e-05 23.5 3.2 8.9e-05 22.2 3.2 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655062|ref|YP_003534959.1| - 0.016 14.5 0.6 0.035 13.5 0.6 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_2 PF02653.16 gi|292655063|ref|YP_003534960.1| - 7.9e-35 120.3 36.7 9.5e-35 120.0 36.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|292655064|ref|YP_003534961.1| - 1.1e-33 116.6 41.2 1.7e-33 115.9 41.2 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|292655065|ref|YP_003534962.1| - 7.5e-31 107.5 0.0 9.5e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|292655065|ref|YP_003534962.1| - 7.3e-12 44.9 0.6 1.7e-11 43.8 0.6 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|292655065|ref|YP_003534962.1| - 2.2e-07 31.0 2.3 0.0068 16.3 0.8 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|292655065|ref|YP_003534962.1| - 0.00017 21.3 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|292655065|ref|YP_003534962.1| - 0.00019 22.0 0.0 0.00024 21.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|292655065|ref|YP_003534962.1| - 0.00081 19.5 0.4 0.0013 18.7 0.4 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|292655065|ref|YP_003534962.1| - 0.0019 18.1 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|292655065|ref|YP_003534962.1| - 0.0035 16.8 0.0 0.0042 16.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292655065|ref|YP_003534962.1| - 0.0068 16.8 0.0 0.0087 16.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|292655065|ref|YP_003534962.1| - 0.011 15.5 0.0 0.045 13.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|292655065|ref|YP_003534962.1| - 0.013 14.3 0.1 0.29 9.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|292655065|ref|YP_003534962.1| - 0.039 14.5 0.0 0.079 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|292655065|ref|YP_003534962.1| - 0.044 14.0 0.0 0.097 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|292655065|ref|YP_003534962.1| - 0.056 12.7 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.6 gi|292655065|ref|YP_003534962.1| - 0.064 13.0 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|292655065|ref|YP_003534962.1| - 0.065 13.5 0.0 0.15 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|292655065|ref|YP_003534962.1| - 0.081 13.3 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_27 PF13514.6 gi|292655065|ref|YP_003534962.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|292655065|ref|YP_003534962.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DAGAT PF03982.13 gi|292655065|ref|YP_003534962.1| - 0.17 10.8 0.0 0.28 10.0 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol acyltransferase ABC_tran PF00005.27 gi|292655066|ref|YP_003534963.1| - 7e-30 104.3 0.0 9.7e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655066|ref|YP_003534963.1| - 2.2e-09 37.6 0.1 0.0015 18.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|292655066|ref|YP_003534963.1| - 0.00032 21.2 0.0 0.00042 20.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|292655066|ref|YP_003534963.1| - 0.0041 15.8 0.0 0.043 12.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|292655066|ref|YP_003534963.1| - 0.0062 16.7 0.2 0.051 13.8 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|292655066|ref|YP_003534963.1| - 0.011 16.1 0.2 0.076 13.4 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|292655066|ref|YP_003534963.1| - 0.043 13.6 0.2 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|292655066|ref|YP_003534963.1| - 0.055 13.8 0.1 0.84 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|292655066|ref|YP_003534963.1| - 0.082 12.3 0.0 10 5.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|292655066|ref|YP_003534963.1| - 0.088 12.5 0.9 0.27 10.9 0.0 2.0 2 1 1 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|292655066|ref|YP_003534963.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase Thioredoxin PF00085.20 gi|292655067|ref|YP_003534964.1| - 2.1e-12 46.9 0.0 3.4e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|292655067|ref|YP_003534964.1| - 0.00021 21.2 0.0 0.00061 19.7 0.0 1.7 2 0 0 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_2 PF13098.6 gi|292655067|ref|YP_003534964.1| - 0.00077 19.9 0.0 0.0061 17.0 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain Usp PF00582.26 gi|292655068|ref|YP_003534965.1| - 5.3e-20 72.4 0.3 1.3e-19 71.1 0.3 1.5 1 1 0 1 1 1 1 Universal stress protein family COX1 PF00115.20 gi|292655070|ref|YP_003534967.1| - 3.2e-147 490.9 61.8 3.2e-147 490.9 61.8 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I CaKB PF03185.15 gi|292655071|ref|YP_003534968.1| - 0.14 11.8 0.1 0.16 11.6 0.1 1.1 1 0 0 1 1 1 0 Calcium-activated potassium channel, beta subunit DUF3007 PF11460.8 gi|292655071|ref|YP_003534968.1| - 0.18 12.0 0.5 0.25 11.6 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Cyt_c_ox_IV PF12270.8 gi|292655072|ref|YP_003534969.1| - 0.04 14.1 10.3 0.14 12.3 1.0 2.1 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV DUF4345 PF14248.6 gi|292655072|ref|YP_003534969.1| - 0.18 11.7 13.0 0.27 11.1 13.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) CD20 PF04103.15 gi|292655072|ref|YP_003534969.1| - 0.53 10.4 10.8 0.51 10.4 3.8 2.1 1 1 1 2 2 2 0 CD20-like family Claudin_2 PF13903.6 gi|292655072|ref|YP_003534969.1| - 1.1 9.0 7.2 0.49 10.1 5.3 1.4 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction MMR_HSR1_Xtn PF16897.5 gi|292655074|ref|YP_003534971.1| - 4.2e-30 103.9 0.0 9.5e-30 102.7 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|292655074|ref|YP_003534971.1| - 1.2e-22 80.1 0.0 2.5e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|292655074|ref|YP_003534971.1| - 4.7e-14 52.2 0.4 4.3e-12 45.8 0.1 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.21 gi|292655074|ref|YP_003534971.1| - 4.2e-13 49.1 0.1 9e-13 48.1 0.1 1.6 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|292655074|ref|YP_003534971.1| - 4.9e-08 33.1 1.5 0.0051 16.7 0.1 3.4 3 2 1 4 4 4 2 RsgA GTPase Dynamin_N PF00350.23 gi|292655074|ref|YP_003534971.1| - 2.4e-05 24.4 0.0 0.093 12.8 0.1 2.6 1 1 1 2 2 2 2 Dynamin family ATP_bind_1 PF03029.17 gi|292655074|ref|YP_003534971.1| - 5.3e-05 23.1 0.1 0.15 11.8 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|292655074|ref|YP_003534971.1| - 0.0002 20.4 0.6 0.0043 16.1 0.0 2.6 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|292655074|ref|YP_003534971.1| - 0.00027 20.4 0.1 0.00057 19.3 0.0 1.5 2 0 0 2 2 2 1 AIG1 family Arf PF00025.21 gi|292655074|ref|YP_003534971.1| - 0.0035 16.8 0.2 0.033 13.6 0.1 2.4 2 1 0 2 2 2 1 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|292655074|ref|YP_003534971.1| - 0.0054 16.3 0.0 0.35 10.4 0.0 2.9 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|292655074|ref|YP_003534971.1| - 0.0069 16.9 0.0 0.1 13.1 0.0 2.3 2 0 0 2 2 2 1 ABC transporter ABC_tran_CTD PF16326.5 gi|292655074|ref|YP_003534971.1| - 0.021 15.0 1.3 0.021 15.0 1.3 2.3 3 0 0 3 3 2 0 ABC transporter C-terminal domain AAA_28 PF13521.6 gi|292655074|ref|YP_003534971.1| - 0.029 14.6 0.1 0.088 13.0 0.1 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|292655074|ref|YP_003534971.1| - 0.033 13.8 0.4 3.3 7.3 0.0 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ThiS PF02597.20 gi|292655074|ref|YP_003534971.1| - 0.042 14.5 0.4 1.1 9.9 0.0 3.2 3 1 0 3 3 2 0 ThiS family AAA_29 PF13555.6 gi|292655074|ref|YP_003534971.1| - 0.11 12.2 0.1 0.3 10.9 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Roc PF08477.13 gi|292655074|ref|YP_003534971.1| - 0.12 12.6 0.0 0.5 10.6 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|292655074|ref|YP_003534971.1| - 0.13 12.6 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain RBD PF02196.15 gi|292655074|ref|YP_003534971.1| - 0.17 11.9 0.0 0.97 9.6 0.0 2.2 2 0 0 2 2 2 0 Raf-like Ras-binding domain SRPRB PF09439.10 gi|292655074|ref|YP_003534971.1| - 0.24 10.8 0.9 0.4 10.1 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit CCB1 PF12046.8 gi|292655075|ref|YP_003534972.1| - 0.07 12.5 0.7 0.5 9.7 0.1 2.0 1 1 1 2 2 2 0 Cofactor assembly of complex C subunit B MatE PF01554.18 gi|292655076|ref|YP_003534973.1| - 1.2e-40 138.8 26.5 5.2e-24 84.7 9.1 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|292655076|ref|YP_003534973.1| - 3e-10 40.3 4.2 3e-10 40.3 4.2 4.0 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Glyoxalase PF00903.25 gi|292655077|ref|YP_003534974.1| - 9.9e-22 77.5 4.5 6e-14 52.3 0.2 2.3 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|292655077|ref|YP_003534974.1| - 9.5e-10 39.2 3.1 0.00019 22.2 0.6 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|292655077|ref|YP_003534974.1| - 4.5e-09 36.6 1.5 0.0018 18.5 0.2 3.2 2 2 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|292655077|ref|YP_003534974.1| - 0.00065 19.9 2.0 0.26 11.4 0.1 3.7 2 2 0 2 2 2 1 Glyoxalase-like domain Lambda_tail_I PF06805.12 gi|292655077|ref|YP_003534974.1| - 0.13 12.6 0.0 1.9 8.9 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I Glyoxalase_2 PF12681.7 gi|292655077|ref|YP_003534974.1| - 0.18 11.7 0.2 6.5 6.7 0.0 3.0 2 1 0 2 2 2 0 Glyoxalase-like domain Exosortase_EpsH PF09721.10 gi|292655078|ref|YP_003534975.1| - 6.2e-18 65.2 19.5 8.5e-18 64.8 19.5 1.3 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TP_methylase PF00590.20 gi|292655079|ref|YP_003534976.1| - 4.4e-17 62.7 0.9 5.4e-17 62.4 0.9 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DoxX PF07681.12 gi|292655080|ref|YP_003534977.1| - 5.5e-09 36.5 7.2 1.4e-08 35.2 7.2 1.7 1 1 0 1 1 1 1 DoxX DoxD PF04173.13 gi|292655080|ref|YP_003534977.1| - 0.00012 22.1 3.6 0.00017 21.5 3.6 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD DUF308 PF03729.13 gi|292655080|ref|YP_003534977.1| - 0.21 11.9 19.3 0.29 11.5 0.3 3.5 3 1 1 4 4 4 0 Short repeat of unknown function (DUF308) Prim_Zn_Ribbon PF08273.12 gi|292655081|ref|YP_003534978.1| - 0.033 14.5 0.1 0.054 13.8 0.0 1.6 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.6 gi|292655082|ref|YP_003534979.1| - 0.00022 21.1 2.1 0.00028 20.7 2.1 1.1 1 0 0 1 1 1 1 Nudix N-terminal GATA PF00320.27 gi|292655082|ref|YP_003534979.1| - 0.0028 17.2 1.2 0.0035 16.9 1.2 1.2 1 0 0 1 1 1 1 GATA zinc finger Zn-ribbon_8 PF09723.10 gi|292655082|ref|YP_003534979.1| - 0.058 13.5 1.1 0.38 10.9 1.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|292655082|ref|YP_003534979.1| - 0.15 12.3 3.7 0.22 11.8 3.7 1.4 1 1 0 1 1 1 0 zinc-ribbon zf-ISL3 PF14690.6 gi|292655082|ref|YP_003534979.1| - 0.16 12.7 3.4 0.55 10.9 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.13 gi|292655082|ref|YP_003534979.1| - 0.27 11.0 4.5 0.6 9.9 4.5 1.7 1 1 0 1 1 1 0 InsA N-terminal domain zinc_ribbon_6 PF14599.6 gi|292655082|ref|YP_003534979.1| - 0.37 10.8 3.4 0.89 9.6 0.5 2.0 1 1 1 2 2 2 0 Zinc-ribbon Rieske PF00355.26 gi|292655083|ref|YP_003534980.1| - 1.5e-09 37.7 0.0 2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_24 PF13412.6 gi|292655084|ref|YP_003534981.1| - 1.3e-16 59.9 0.4 2e-16 59.2 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|292655084|ref|YP_003534981.1| - 4.7e-14 51.9 1.2 4.7e-14 51.9 1.2 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|292655084|ref|YP_003534981.1| - 8.1e-08 32.2 0.1 1.4e-07 31.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292655084|ref|YP_003534981.1| - 9.3e-08 31.8 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292655084|ref|YP_003534981.1| - 2.2e-07 30.7 0.0 3.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|292655084|ref|YP_003534981.1| - 3.5e-07 29.9 0.2 7.3e-07 28.9 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292655084|ref|YP_003534981.1| - 9.9e-07 28.6 0.0 1.8e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|292655084|ref|YP_003534981.1| - 1.1e-05 25.0 0.1 2.1e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|292655084|ref|YP_003534981.1| - 3.9e-05 23.1 0.0 7.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|292655084|ref|YP_003534981.1| - 6.3e-05 23.0 0.1 0.00012 22.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|292655084|ref|YP_003534981.1| - 0.00014 21.6 0.1 0.00023 20.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|292655084|ref|YP_003534981.1| - 0.00022 21.1 0.0 0.00037 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|292655084|ref|YP_003534981.1| - 0.00062 19.9 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|292655084|ref|YP_003534981.1| - 0.00066 19.2 0.2 0.0012 18.3 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 FaeA PF04703.12 gi|292655084|ref|YP_003534981.1| - 0.0011 19.2 0.0 0.0017 18.7 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_Crp_2 PF13545.6 gi|292655084|ref|YP_003534981.1| - 0.0017 18.3 0.1 0.0039 17.1 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|292655084|ref|YP_003534981.1| - 0.0021 17.8 0.1 0.0041 16.9 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|292655084|ref|YP_003534981.1| - 0.0021 18.4 0.0 0.0033 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|292655084|ref|YP_003534981.1| - 0.0022 17.7 0.1 0.0045 16.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|292655084|ref|YP_003534981.1| - 0.0027 17.7 0.2 0.0057 16.7 0.2 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|292655084|ref|YP_003534981.1| - 0.0028 17.6 0.0 0.0045 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|292655084|ref|YP_003534981.1| - 0.0034 17.2 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|292655084|ref|YP_003534981.1| - 0.0035 17.1 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Mga PF08280.11 gi|292655084|ref|YP_003534981.1| - 0.0037 17.3 0.0 0.0062 16.5 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain PaaX PF07848.12 gi|292655084|ref|YP_003534981.1| - 0.0057 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 PaaX-like protein HTH_30 PF13556.6 gi|292655084|ref|YP_003534981.1| - 0.0073 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|292655084|ref|YP_003534981.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|292655084|ref|YP_003534981.1| - 0.016 15.3 0.1 0.035 14.2 0.1 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_Tnp_ISL3 PF13542.6 gi|292655084|ref|YP_003534981.1| - 0.019 14.4 0.1 0.035 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Penicillinase_R PF03965.16 gi|292655084|ref|YP_003534981.1| - 0.026 14.9 0.0 0.055 13.8 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.6 gi|292655084|ref|YP_003534981.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DUF4423 PF14394.6 gi|292655084|ref|YP_003534981.1| - 0.029 14.1 0.0 8 6.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_6 PF01418.17 gi|292655084|ref|YP_003534981.1| - 0.049 13.6 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_50 PF18024.1 gi|292655084|ref|YP_003534981.1| - 0.058 13.0 0.9 0.085 12.5 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|292655084|ref|YP_003534981.1| - 0.063 13.2 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|292655084|ref|YP_003534981.1| - 0.073 12.9 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3489 PF11994.8 gi|292655084|ref|YP_003534981.1| - 0.077 13.1 0.0 2.6 8.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3489) RPA_C PF08784.11 gi|292655084|ref|YP_003534981.1| - 0.087 13.5 0.0 0.24 12.1 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal HTH_27 PF13463.6 gi|292655084|ref|YP_003534981.1| - 0.11 13.0 0.1 0.24 11.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|292655084|ref|YP_003534981.1| - 0.15 12.5 0.0 0.24 11.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_35 PF13693.6 gi|292655084|ref|YP_003534981.1| - 0.18 11.9 0.1 0.32 11.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DDE_Tnp_1 PF01609.21 gi|292655085|ref|YP_003534982.1| - 1.6e-26 93.3 0.0 2.3e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292655085|ref|YP_003534982.1| - 0.0062 15.8 0.1 0.014 14.6 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 Met_10 PF02475.16 gi|292655089|ref|YP_003534986.1| - 2.4e-55 187.4 0.0 3.2e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|292655089|ref|YP_003534986.1| - 2.5e-13 49.7 0.0 7.3e-13 48.2 0.0 1.8 2 0 0 2 2 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|292655089|ref|YP_003534986.1| - 1.3e-06 28.0 0.1 2.2e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|292655089|ref|YP_003534986.1| - 1.6e-06 27.8 0.0 3e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|292655089|ref|YP_003534986.1| - 3.8e-06 27.5 0.4 1.7e-05 25.5 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|292655089|ref|YP_003534986.1| - 5e-06 26.2 0.0 7.7e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|292655089|ref|YP_003534986.1| - 0.0001 22.0 0.1 0.00035 20.3 0.1 1.8 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|292655089|ref|YP_003534986.1| - 0.0007 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|292655089|ref|YP_003534986.1| - 0.00095 18.4 0.0 0.0017 17.6 0.0 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_24 PF13578.6 gi|292655089|ref|YP_003534986.1| - 0.0025 18.8 4.8 0.0046 18.0 0.3 2.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655089|ref|YP_003534986.1| - 0.005 17.5 0.0 0.015 15.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655089|ref|YP_003534986.1| - 0.0061 16.4 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|292655089|ref|YP_003534986.1| - 0.013 14.7 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|292655089|ref|YP_003534986.1| - 0.033 14.1 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 gi|292655089|ref|YP_003534986.1| - 0.038 13.7 0.1 0.13 11.9 0.1 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|292655089|ref|YP_003534986.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|292655089|ref|YP_003534986.1| - 0.2 10.6 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|292655089|ref|YP_003534986.1| - 0.24 10.7 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Usp PF00582.26 gi|292655091|ref|YP_003534988.1| - 1.4e-36 126.1 2.4 1.6e-36 125.9 2.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|292655092|ref|YP_003534989.1| - 1.1e-32 113.5 0.1 1.2e-32 113.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family SNARE_assoc PF09335.11 gi|292655093|ref|YP_003534990.1| - 5e-20 72.2 6.0 5e-20 72.2 6.0 2.6 2 2 1 3 3 3 1 SNARE associated Golgi protein Acetyltransf_6 PF13480.7 gi|292655093|ref|YP_003534990.1| - 0.012 15.8 1.0 0.026 14.7 1.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain E1-E2_ATPase PF00122.20 gi|292655094|ref|YP_003534991.1| - 4.8e-49 166.3 8.4 5.7e-49 166.1 6.2 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|292655094|ref|YP_003534991.1| - 3.5e-39 134.4 0.8 3.5e-39 134.4 0.8 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|292655094|ref|YP_003534991.1| - 7.5e-20 72.1 16.6 9.5e-20 71.8 12.5 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|292655094|ref|YP_003534991.1| - 7.5e-16 57.6 0.0 7.5e-16 57.6 0.0 2.1 2 1 1 3 3 3 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|292655094|ref|YP_003534991.1| - 2.5e-15 56.3 0.0 5.4e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|292655094|ref|YP_003534991.1| - 1.7e-05 24.7 0.4 0.15 11.8 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292655094|ref|YP_003534991.1| - 0.00011 22.6 0.6 0.00028 21.3 0.6 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Molybdopterin PF00384.22 gi|292655095|ref|YP_003534992.1| - 3.3e-87 293.2 0.0 4e-87 292.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|292655095|ref|YP_003534992.1| - 2.8e-31 107.8 0.0 9.3e-31 106.1 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|292655095|ref|YP_003534992.1| - 1.1e-09 38.1 0.4 2.9e-09 36.8 0.4 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Pyridox_ox_2 PF12900.7 gi|292655097|ref|YP_003534994.1| - 2.1e-11 44.0 0.0 2.5e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|292655097|ref|YP_003534994.1| - 0.0077 16.4 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Sigma54_activ_2 PF14532.6 gi|292655097|ref|YP_003534994.1| - 0.071 13.2 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain Usp PF00582.26 gi|292655098|ref|YP_003534995.1| - 5.3e-06 27.0 4.1 8.8e-06 26.3 4.1 1.4 1 1 0 1 1 1 1 Universal stress protein family NPCBM_assoc PF10633.9 gi|292655099|ref|YP_003534996.1| - 0.096 13.0 0.1 0.16 12.3 0.1 1.4 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase E1-E2_ATPase PF00122.20 gi|292655100|ref|YP_003534997.1| - 1.2e-43 148.8 0.6 2.7e-43 147.6 0.6 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|292655100|ref|YP_003534997.1| - 7.3e-34 117.9 8.2 1.5e-33 116.9 8.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|292655100|ref|YP_003534997.1| - 8.3e-09 35.8 0.0 2.9e-08 34.0 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|292655100|ref|YP_003534997.1| - 0.00043 20.1 0.3 0.00062 19.6 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|292655100|ref|YP_003534997.1| - 0.07 13.9 0.7 0.23 12.2 0.8 1.8 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.6 gi|292655101|ref|YP_003534998.1| - 1.5e-45 155.6 15.6 1.9e-45 155.3 15.6 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|292655101|ref|YP_003534998.1| - 0.00028 20.8 3.6 0.00028 20.8 3.6 1.5 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region COX2 PF00116.20 gi|292655104|ref|YP_003535001.1| - 8.1e-10 38.6 0.0 1.1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|292655104|ref|YP_003535001.1| - 2.5e-05 24.3 0.0 3.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.10 gi|292655104|ref|YP_003535001.1| - 0.00074 19.2 1.3 0.0014 18.3 1.3 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.20 gi|292655105|ref|YP_003535002.1| - 2.7e-89 300.0 59.1 2.7e-89 300.0 59.1 1.9 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF443 PF04276.12 gi|292655106|ref|YP_003535003.1| - 0.082 12.7 1.9 0.09 12.6 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF443) PsbN PF02468.15 gi|292655107|ref|YP_003535004.1| - 0.031 14.1 3.9 0.031 14.1 3.9 1.6 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) DUF4006 PF13179.6 gi|292655107|ref|YP_003535004.1| - 0.05 13.5 0.9 0.061 13.2 0.1 1.5 1 1 1 2 2 2 0 Family of unknown function (DUF4006) Phage_holin_3_6 PF07332.11 gi|292655107|ref|YP_003535004.1| - 0.17 11.9 6.0 0.18 11.8 6.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III MHYT PF03707.16 gi|292655107|ref|YP_003535004.1| - 1.7 8.8 9.9 1.9e+02 2.3 9.9 2.0 1 1 0 1 1 1 0 Bacterial signalling protein N terminal repeat Usp PF00582.26 gi|292655108|ref|YP_003535005.1| - 1.5e-32 113.0 3.5 1.7e-32 112.9 3.5 1.0 1 0 0 1 1 1 1 Universal stress protein family SPC25 PF06703.11 gi|292655109|ref|YP_003535006.1| - 1 9.1 2.3 1.5 8.6 2.3 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Aldolase PF01081.19 gi|292655110|ref|YP_003535007.1| - 5.5e-44 150.0 0.8 6.8e-44 149.6 0.8 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|292655110|ref|YP_003535007.1| - 0.0087 15.3 6.6 0.91 8.7 0.6 3.0 2 1 1 3 3 3 3 Dihydroorotate dehydrogenase Herpes_UL56 PF04534.12 gi|292655110|ref|YP_003535007.1| - 0.012 15.1 1.1 0.015 14.8 0.4 1.5 2 0 0 2 2 2 0 Herpesvirus UL56 protein TMP-TENI PF02581.17 gi|292655110|ref|YP_003535007.1| - 0.052 12.9 0.5 1.2 8.4 0.5 2.9 1 1 0 1 1 1 0 Thiamine monophosphate synthase DUF4131 PF13567.6 gi|292655111|ref|YP_003535008.1| - 0.11 12.1 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Pro_CA PF00484.19 gi|292655112|ref|YP_003535009.1| - 6.8e-24 84.9 0.0 9.1e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Peptidase_M17 PF00883.21 gi|292655112|ref|YP_003535009.1| - 0.016 14.5 0.2 0.022 14.0 0.2 1.2 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain bPH_2 PF03703.14 gi|292655113|ref|YP_003535010.1| - 5.1e-48 161.2 6.5 2.3e-19 69.3 0.4 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|292655113|ref|YP_003535010.1| - 0.00059 19.9 0.1 0.19 11.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial PH domain bPH_5 PF10882.8 gi|292655113|ref|YP_003535010.1| - 0.13 12.4 0.1 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain bPH_2 PF03703.14 gi|292655114|ref|YP_003535011.1| - 1.9e-17 63.2 0.0 2.8e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Phage_holin_3_6 PF07332.11 gi|292655114|ref|YP_003535011.1| - 0.024 14.7 5.6 0.039 14.0 5.6 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III R_equi_Vir PF05526.11 gi|292655114|ref|YP_003535011.1| - 0.046 13.6 0.6 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Rhodococcus equi virulence-associated protein YtpI PF14007.6 gi|292655114|ref|YP_003535011.1| - 0.079 13.1 1.1 0.14 12.3 1.1 1.4 1 0 0 1 1 1 0 YtpI-like protein DUF2371 PF10177.9 gi|292655114|ref|YP_003535011.1| - 0.14 12.4 0.1 0.19 11.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) SKA2 PF16740.5 gi|292655115|ref|YP_003535012.1| - 0.004 16.9 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Spindle and kinetochore-associated protein 2 Protoglobin PF11563.8 gi|292655115|ref|YP_003535012.1| - 0.041 13.8 0.5 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 Protoglobin LTXXQ PF07813.12 gi|292655115|ref|YP_003535012.1| - 0.094 13.4 2.4 0.55 11.0 0.4 2.7 3 0 0 3 3 3 0 LTXXQ motif family protein DDRGK PF09756.9 gi|292655115|ref|YP_003535012.1| - 0.11 12.1 1.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 DDRGK domain Metallophos PF00149.28 gi|292655116|ref|YP_003535013.1| - 1.3e-16 61.8 0.4 1.6e-16 61.5 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|292655116|ref|YP_003535013.1| - 1e-09 38.8 0.1 4e-09 36.9 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|292655116|ref|YP_003535013.1| - 0.021 14.2 0.1 0.094 12.0 0.2 2.0 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily CopD PF05425.13 gi|292655118|ref|YP_003535015.1| - 4.5e-05 23.8 7.4 4.5e-05 23.8 7.4 2.2 2 1 0 2 2 2 1 Copper resistance protein D DUF2071 PF09844.9 gi|292655119|ref|YP_003535016.1| - 2.3e-69 233.3 0.0 2.5e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|292655119|ref|YP_003535016.1| - 0.0077 15.8 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF3570 PF12094.8 gi|292655119|ref|YP_003535016.1| - 0.045 12.5 0.1 0.057 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3570) Aldo_ket_red PF00248.21 gi|292655120|ref|YP_003535017.1| - 3.5e-63 213.5 0.0 5.8e-62 209.5 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family Macro PF01661.21 gi|292655121|ref|YP_003535018.1| - 9.7e-14 51.4 0.0 1.6e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Macro domain NMO PF03060.15 gi|292655121|ref|YP_003535018.1| - 0.0026 17.2 0.1 0.004 16.6 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.17 gi|292655121|ref|YP_003535018.1| - 0.0075 15.4 0.0 0.0093 15.1 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|292655121|ref|YP_003535018.1| - 0.034 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein HTH_20 PF12840.7 gi|292655122|ref|YP_003535019.1| - 2.2e-09 37.2 0.2 3.2e-09 36.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655122|ref|YP_003535019.1| - 7.8e-05 22.4 0.1 0.00017 21.3 0.1 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292655122|ref|YP_003535019.1| - 0.007 16.2 0.1 0.0087 15.9 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|292655122|ref|YP_003535019.1| - 0.018 14.9 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|292655122|ref|YP_003535019.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|292655122|ref|YP_003535019.1| - 0.07 13.2 0.0 0.68 10.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase FUR PF01475.19 gi|292655122|ref|YP_003535019.1| - 0.19 11.8 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family CPP1-like PF11833.8 gi|292655123|ref|YP_003535020.1| - 0.083 12.5 4.5 0.098 12.3 4.5 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Thioredoxin PF00085.20 gi|292655124|ref|YP_003535021.1| - 2.4e-28 98.1 0.0 3e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|292655124|ref|YP_003535021.1| - 3.6e-10 40.3 0.2 1.2e-08 35.3 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|292655124|ref|YP_003535021.1| - 5.8e-07 29.7 0.0 0.0017 18.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like DSBA PF01323.20 gi|292655124|ref|YP_003535021.1| - 6.1e-07 29.4 0.8 2.6e-06 27.4 0.1 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_9 PF14595.6 gi|292655124|ref|YP_003535021.1| - 1.7e-05 24.6 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|292655124|ref|YP_003535021.1| - 2.7e-05 24.1 0.0 4.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.11 gi|292655124|ref|YP_003535021.1| - 6.5e-05 22.9 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.6 gi|292655124|ref|YP_003535021.1| - 0.00015 21.8 0.2 0.00023 21.1 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|292655124|ref|YP_003535021.1| - 0.00018 21.6 0.2 0.00041 20.5 0.2 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_5 PF13743.6 gi|292655124|ref|YP_003535021.1| - 0.001 18.8 0.2 0.0041 16.8 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin DUF836 PF05768.14 gi|292655124|ref|YP_003535021.1| - 0.0011 19.4 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|292655124|ref|YP_003535021.1| - 0.003 17.5 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|292655124|ref|YP_003535021.1| - 0.0042 17.3 0.4 0.0098 16.1 0.3 1.7 1 1 0 1 1 1 1 Glutaredoxin OST3_OST6 PF04756.13 gi|292655124|ref|YP_003535021.1| - 0.0049 16.3 0.0 0.0061 15.9 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family TrbC_Ftype PF09673.10 gi|292655124|ref|YP_003535021.1| - 0.027 14.5 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Redoxin PF08534.10 gi|292655124|ref|YP_003535021.1| - 0.097 12.4 0.2 0.18 11.5 0.2 1.5 1 1 0 1 1 1 0 Redoxin Glycos_trans_3N PF02885.17 gi|292655125|ref|YP_003535022.1| - 1.4e-10 40.9 0.0 3.1e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|292655125|ref|YP_003535022.1| - 3.3e-10 39.5 0.0 9.3e-10 38.0 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|292655125|ref|YP_003535022.1| - 1e-09 38.4 2.3 3.7e-09 36.6 2.3 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 gi|292655125|ref|YP_003535022.1| - 0.00031 19.7 0.1 0.00052 18.9 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Transcrip_act PF04949.13 gi|292655125|ref|YP_003535022.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional activator IF-2B PF01008.17 gi|292655126|ref|YP_003535023.1| - 3.2e-76 256.2 0.5 3.7e-76 256.0 0.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HTH_10 PF04967.12 gi|292655127|ref|YP_003535024.1| - 1.9e-14 53.2 0.0 3.2e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|292655127|ref|YP_003535024.1| - 0.00053 19.6 0.6 3.5 7.4 0.2 3.3 3 0 0 3 3 3 2 Sigma-70, region 4 VWA_3 PF13768.6 gi|292655127|ref|YP_003535024.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain Complex1_49kDa PF00346.19 gi|292655128|ref|YP_003535025.1| - 3.7e-82 275.5 0.0 1.2e-80 270.5 0.0 2.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|292655128|ref|YP_003535025.1| - 7.6e-34 117.0 0.1 1.8e-33 115.8 0.1 1.7 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MCPsignal PF00015.21 gi|292655129|ref|YP_003535026.1| - 4.6e-41 140.5 54.9 1.9e-40 138.5 24.3 4.3 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|292655129|ref|YP_003535026.1| - 1.9e-19 70.4 0.1 1.9e-19 70.4 0.1 5.0 4 2 2 6 6 5 1 Cache domain HAMP PF00672.25 gi|292655129|ref|YP_003535026.1| - 2.3e-10 40.7 16.7 2.6e-09 37.3 0.2 6.0 5 1 1 6 6 6 2 HAMP domain DUF948 PF06103.11 gi|292655129|ref|YP_003535026.1| - 2.5e-10 40.5 32.3 0.0049 17.1 0.1 6.2 5 0 0 5 5 5 3 Bacterial protein of unknown function (DUF948) Cache_3-Cache_2 PF17201.4 gi|292655129|ref|YP_003535026.1| - 1.7e-09 37.4 0.0 1.7e-09 37.4 0.0 4.3 4 1 1 5 5 4 2 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 gi|292655129|ref|YP_003535026.1| - 9.8e-06 25.0 0.1 9.8e-06 25.0 0.1 3.0 2 1 0 3 3 3 1 Cache domain sCache_2 PF17200.4 gi|292655129|ref|YP_003535026.1| - 1.5e-05 24.9 3.0 0.00012 22.0 1.0 3.4 3 0 0 3 3 3 1 Single Cache domain 2 EzrA PF06160.12 gi|292655129|ref|YP_003535026.1| - 0.00074 17.8 22.4 0.0022 16.3 6.9 3.5 2 1 0 3 3 3 1 Septation ring formation regulator, EzrA Spc7 PF08317.11 gi|292655129|ref|YP_003535026.1| - 0.0024 16.8 25.0 0.17 10.7 0.3 3.8 3 1 1 4 4 4 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|292655129|ref|YP_003535026.1| - 0.047 13.7 31.7 0.11 12.5 1.2 5.7 3 3 1 5 5 5 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|292655129|ref|YP_003535026.1| - 0.18 12.3 20.3 8.8 6.9 0.0 6.2 3 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 gi|292655129|ref|YP_003535026.1| - 0.2 11.7 31.6 0.16 12.0 0.5 4.6 3 2 2 5 5 4 0 Laminin Domain II 4HB_MCP_1 PF12729.7 gi|292655129|ref|YP_003535026.1| - 0.25 10.9 0.0 0.25 10.9 0.0 5.0 3 1 3 6 6 6 0 Four helix bundle sensory module for signal transduction DUF3106 PF11304.8 gi|292655129|ref|YP_003535026.1| - 0.66 10.5 3.9 2.9 8.4 0.7 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3106) COG2 PF06148.11 gi|292655129|ref|YP_003535026.1| - 0.68 10.0 22.9 0.081 13.0 0.6 5.3 4 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DASH_Dad2 PF08654.10 gi|292655129|ref|YP_003535026.1| - 0.73 10.3 24.7 0.53 10.7 0.5 5.9 3 2 3 6 6 6 0 DASH complex subunit Dad2 BLOC1_2 PF10046.9 gi|292655129|ref|YP_003535026.1| - 0.79 10.1 24.0 3.3 8.1 0.3 5.9 5 1 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.6 gi|292655129|ref|YP_003535026.1| - 1 9.8 15.1 0.61 10.5 2.8 4.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) STAT_alpha PF01017.20 gi|292655129|ref|YP_003535026.1| - 1.1 9.2 8.1 2.3 8.1 0.3 3.6 2 1 0 2 2 2 0 STAT protein, all-alpha domain Hemagglutinin PF00509.18 gi|292655129|ref|YP_003535026.1| - 1.1 7.6 6.3 0.36 9.2 0.1 2.5 3 0 0 3 3 3 0 Haemagglutinin Med15_fungi PF05397.12 gi|292655129|ref|YP_003535026.1| - 1.1 9.6 2.9 19 5.6 0.2 3.5 4 0 0 4 4 3 0 Mediator complex subunit 15 DUF2203 PF09969.9 gi|292655129|ref|YP_003535026.1| - 1.6 9.5 29.6 2.7 8.7 3.3 5.4 1 1 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) SKA2 PF16740.5 gi|292655129|ref|YP_003535026.1| - 2.7 7.8 14.2 13 5.6 1.5 4.7 2 2 2 4 4 4 0 Spindle and kinetochore-associated protein 2 KxDL PF10241.9 gi|292655129|ref|YP_003535026.1| - 3.1 8.1 9.1 6.2 7.2 0.3 4.1 4 0 0 4 4 4 0 Uncharacterized conserved protein DUF4559 PF15112.6 gi|292655129|ref|YP_003535026.1| - 3.5 7.2 12.4 3.5 7.2 1.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Prominin PF05478.11 gi|292655129|ref|YP_003535026.1| - 3.6 5.4 15.5 3.9 5.3 2.1 2.9 1 1 1 3 3 3 0 Prominin Tweety PF04906.13 gi|292655129|ref|YP_003535026.1| - 4.2 5.9 9.8 7 5.2 1.7 2.7 2 0 0 2 2 2 0 Tweety Not3 PF04065.15 gi|292655129|ref|YP_003535026.1| - 4.3 6.7 17.6 0.51 9.7 3.8 3.1 2 1 1 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component Nup88 PF10168.9 gi|292655129|ref|YP_003535026.1| - 6.4 4.5 13.3 2.5 5.8 2.9 2.3 1 1 1 2 2 2 0 Nuclear pore component CorA PF01544.18 gi|292655129|ref|YP_003535026.1| - 8.9 5.5 16.9 7.2 5.8 1.7 4.2 1 1 2 4 4 4 0 CorA-like Mg2+ transporter protein RuBisCO_large PF00016.20 gi|292655130|ref|YP_003535027.1| - 9.9e-93 310.6 0.7 2.5e-92 309.3 0.7 1.7 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|292655130|ref|YP_003535027.1| - 4e-39 133.5 0.0 8.5e-39 132.4 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DEAD PF00270.29 gi|292655131|ref|YP_003535028.1| - 3.8e-19 69.1 0.0 9e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|292655131|ref|YP_003535028.1| - 5.5e-07 29.9 0.0 1.7e-06 28.3 0.0 1.9 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|292655131|ref|YP_003535028.1| - 5.4e-05 23.3 0.0 8.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Pilin_N PF07790.11 gi|292655132|ref|YP_003535029.1| - 4.1e-24 85.3 2.8 9e-24 84.2 2.8 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Aminotran_1_2 PF00155.21 gi|292655133|ref|YP_003535030.1| - 1.7e-66 224.9 0.0 1.9e-66 224.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|292655133|ref|YP_003535030.1| - 8.5e-06 24.5 0.0 1.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|292655133|ref|YP_003535030.1| - 0.00034 20.0 0.0 0.00058 19.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|292655133|ref|YP_003535030.1| - 0.00085 18.7 0.3 0.0059 16.0 0.1 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|292655133|ref|YP_003535030.1| - 0.001 18.1 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.19 gi|292655134|ref|YP_003535031.1| - 1.8e-34 118.6 0.7 2e-34 118.5 0.7 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Cadherin_4 PF17803.1 gi|292655134|ref|YP_003535031.1| - 0.048 14.3 0.7 0.076 13.7 0.7 1.4 1 0 0 1 1 1 0 Bacterial cadherin-like domain PMT_2 PF13231.6 gi|292655135|ref|YP_003535032.1| - 3.5e-12 46.8 7.4 3.5e-12 46.8 7.4 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TraG_N PF07916.11 gi|292655135|ref|YP_003535032.1| - 0.012 14.5 1.1 0.019 13.9 1.1 1.4 1 0 0 1 1 1 0 TraG-like protein, N-terminal region DUF668 PF05003.12 gi|292655135|ref|YP_003535032.1| - 0.024 15.1 0.0 0.057 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF668) DUF2070 PF09843.9 gi|292655135|ref|YP_003535032.1| - 0.82 7.9 9.2 0.4 8.9 0.3 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) ATP-grasp PF02222.22 gi|292655136|ref|YP_003535033.1| - 7.9e-49 165.5 0.0 1e-48 165.1 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|292655136|ref|YP_003535033.1| - 7.4e-18 64.0 0.0 1.6e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain 2-Hacid_dh_C PF02826.19 gi|292655136|ref|YP_003535033.1| - 0.00017 21.0 0.0 0.00036 19.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.13 gi|292655136|ref|YP_003535033.1| - 0.01 15.4 0.0 0.026 14.0 0.0 1.7 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus XdhC_C PF13478.6 gi|292655136|ref|YP_003535033.1| - 0.085 13.4 0.1 0.3 11.6 0.1 2.0 1 1 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|292655136|ref|YP_003535033.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRC PF00731.20 gi|292655137|ref|YP_003535034.1| - 3.1e-49 166.4 0.0 3.8e-49 166.1 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase MRF_C1 PF13887.6 gi|292655137|ref|YP_003535034.1| - 0.031 13.4 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 Myelin gene regulatory factor -C-terminal domain 1 Oxidored_q4 PF00507.19 gi|292655138|ref|YP_003535035.1| - 3.3e-32 110.6 0.4 3.9e-32 110.3 0.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GAPT PF11770.8 gi|292655138|ref|YP_003535035.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) Oxidored_q6 PF01058.22 gi|292655139|ref|YP_003535036.1| - 5.7e-22 77.9 0.2 8.5e-22 77.4 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|292655140|ref|YP_003535037.1| - 9.5e-84 280.7 0.1 2.9e-82 275.8 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|292655140|ref|YP_003535037.1| - 3.8e-34 117.9 0.2 6.5e-34 117.2 0.2 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|292655141|ref|YP_003535038.1| - 4.8e-93 311.7 19.0 5.6e-93 311.5 19.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 gi|292655142|ref|YP_003535039.1| - 1.8e-12 47.6 10.1 3e-12 47.0 10.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|292655142|ref|YP_003535039.1| - 2e-12 46.3 9.6 1.4e-06 27.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|292655142|ref|YP_003535039.1| - 7.4e-11 42.8 3.5 8.3e-06 26.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|292655142|ref|YP_003535039.1| - 1.5e-09 37.8 8.7 2.1e-09 37.3 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292655142|ref|YP_003535039.1| - 7e-08 32.5 11.2 1.9e-07 31.2 11.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292655142|ref|YP_003535039.1| - 1.5e-07 31.4 19.7 3.6e-06 27.0 11.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|292655142|ref|YP_003535039.1| - 1.6e-05 25.3 10.1 0.00063 20.1 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|292655142|ref|YP_003535039.1| - 1.7e-05 24.7 13.7 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|292655142|ref|YP_003535039.1| - 1.9e-05 25.1 12.6 0.0076 16.8 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|292655142|ref|YP_003535039.1| - 4.5e-05 23.3 12.0 0.0022 18.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|292655142|ref|YP_003535039.1| - 0.00018 21.8 13.6 0.0034 17.8 3.9 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|292655142|ref|YP_003535039.1| - 0.00023 21.9 14.6 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|292655142|ref|YP_003535039.1| - 0.0022 18.8 3.0 0.34 11.8 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|292655142|ref|YP_003535039.1| - 0.0035 17.5 10.2 0.18 12.0 2.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|292655142|ref|YP_003535039.1| - 0.056 13.6 8.1 0.23 11.6 8.3 1.8 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|292655142|ref|YP_003535039.1| - 0.13 12.8 12.1 0.55 10.8 1.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TNFR_c6 PF00020.18 gi|292655142|ref|YP_003535039.1| - 0.34 11.3 7.3 5.4 7.5 1.3 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region zf_PR_Knuckle PF18445.1 gi|292655142|ref|YP_003535039.1| - 5.7 6.8 7.2 23 4.9 1.3 2.6 2 0 0 2 2 2 0 PR zinc knuckle motif Oxidored_q3 PF00499.20 gi|292655143|ref|YP_003535040.1| - 1.2e-18 67.2 6.4 1.7e-18 66.7 6.4 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|292655143|ref|YP_003535040.1| - 0.73 10.0 14.2 0.39 10.9 12.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|292655144|ref|YP_003535041.1| - 0.00094 18.9 1.7 0.0011 18.7 1.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KorB_C PF06613.11 gi|292655144|ref|YP_003535041.1| - 0.15 12.0 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 KorB C-terminal beta-barrel domain Oxidored_q2 PF00420.24 gi|292655145|ref|YP_003535042.1| - 2.5e-22 78.5 7.0 2.7e-22 78.4 7.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|292655146|ref|YP_003535043.1| - 1e-76 258.0 17.6 2.3e-76 256.8 17.6 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|292655146|ref|YP_003535043.1| - 5.8e-18 64.7 0.4 5.3e-17 61.7 0.1 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|292655146|ref|YP_003535043.1| - 0.083 12.5 0.0 0.29 10.7 0.0 1.9 1 1 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|292655147|ref|YP_003535044.1| - 4.4e-73 246.0 27.7 9.5e-73 244.9 27.7 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|292655147|ref|YP_003535044.1| - 0.00087 19.4 1.1 0.00087 19.4 1.1 3.6 3 1 1 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|292655148|ref|YP_003535045.1| - 8.5e-69 232.0 20.8 1.5e-68 231.2 20.8 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|292655148|ref|YP_003535045.1| - 0.002 18.1 2.2 0.002 18.1 2.2 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tudor_4 PF18358.1 gi|292655148|ref|YP_003535045.1| - 0.16 11.6 0.1 0.38 10.4 0.1 1.6 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain DHHA1 PF02272.19 gi|292655150|ref|YP_003535047.1| - 5.3e-14 52.8 0.2 1.2e-13 51.6 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|292655150|ref|YP_003535047.1| - 3.9e-13 49.5 0.0 7.4e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.18 gi|292655150|ref|YP_003535047.1| - 2.5e-07 31.0 0.0 9.7e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.16 gi|292655150|ref|YP_003535047.1| - 0.0001 22.0 0.4 0.00024 20.7 0.1 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DUF1541 PF07563.11 gi|292655150|ref|YP_003535047.1| - 0.16 11.9 0.1 0.31 11.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1541) CBS PF00571.28 gi|292655151|ref|YP_003535048.1| - 6.6e-25 87.3 2.4 9.4e-12 45.2 0.8 3.1 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|292655151|ref|YP_003535048.1| - 9.7e-10 38.6 0.2 6.7e-09 35.9 0.2 2.1 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|292655151|ref|YP_003535048.1| - 0.0015 18.7 0.0 0.011 15.8 0.0 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease DZR PF12773.7 gi|292655153|ref|YP_003535050.1| - 0.0086 16.1 0.3 0.012 15.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|292655153|ref|YP_003535050.1| - 0.01 15.6 0.6 1.8 8.4 0.0 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|292655153|ref|YP_003535050.1| - 0.012 15.2 0.5 0.25 11.0 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|292655153|ref|YP_003535050.1| - 0.042 13.5 0.7 0.042 13.5 0.7 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|292655153|ref|YP_003535050.1| - 0.042 13.4 5.8 1.2 8.7 5.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding CpXC PF14353.6 gi|292655153|ref|YP_003535050.1| - 0.05 13.6 1.2 1.1 9.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|292655153|ref|YP_003535050.1| - 0.055 13.5 0.6 5 7.2 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|292655153|ref|YP_003535050.1| - 0.077 13.4 1.6 2.4 8.6 1.6 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Sgf11 PF08209.11 gi|292655153|ref|YP_003535050.1| - 0.15 11.7 1.1 3.4 7.3 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|292655153|ref|YP_003535050.1| - 0.61 10.3 5.5 2.5 8.3 5.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Nop10p PF04135.12 gi|292655153|ref|YP_003535050.1| - 0.81 9.8 0.1 0.81 9.8 0.1 2.1 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family MFS_1 PF07690.16 gi|292655154|ref|YP_003535051.1| - 7.9e-54 182.9 59.8 5.7e-48 163.6 39.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|292655154|ref|YP_003535051.1| - 1.6e-06 27.3 8.9 1.6e-06 27.3 8.9 2.0 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|292655154|ref|YP_003535051.1| - 0.00011 21.2 18.2 0.00052 19.0 10.0 2.6 2 1 1 3 3 3 2 MFS_1 like family TRI12 PF06609.13 gi|292655154|ref|YP_003535051.1| - 0.063 11.7 7.5 0.064 11.7 2.7 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|292655154|ref|YP_003535051.1| - 3.3 5.9 4.2 11 4.1 2.6 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.13 gi|292655154|ref|YP_003535051.1| - 3.8 5.8 23.9 0.078 11.4 1.2 2.7 1 1 1 2 2 2 0 Transmembrane secretion effector DUF21 PF01595.20 gi|292655156|ref|YP_003535053.1| - 1.1e-30 106.7 0.0 1.5e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|292655156|ref|YP_003535053.1| - 9e-09 35.7 1.1 0.00013 22.4 0.0 2.4 2 0 0 2 2 2 2 CBS domain DUF726 PF05277.12 gi|292655156|ref|YP_003535053.1| - 0.064 12.2 0.3 0.084 11.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Peptidase_M24 PF00557.24 gi|292655157|ref|YP_003535054.1| - 1.5e-60 204.5 0.8 1.8e-60 204.2 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|292655157|ref|YP_003535054.1| - 1.7e-30 106.4 0.1 3.9e-30 105.2 0.1 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Col_cuticle_N PF01484.17 gi|292655158|ref|YP_003535055.1| - 0.25 11.4 0.9 0.43 10.7 0.0 1.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain AAA_26 PF13500.6 gi|292655159|ref|YP_003535056.1| - 7.2e-36 123.9 0.0 1.1e-35 123.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|292655159|ref|YP_003535056.1| - 2.7e-24 85.0 0.1 1.7e-23 82.4 0.0 2.2 3 0 0 3 3 3 1 DRTGG domain CbiA PF01656.23 gi|292655159|ref|YP_003535056.1| - 1.2e-09 38.3 0.0 2.2e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PucR PF07905.11 gi|292655159|ref|YP_003535056.1| - 0.025 14.8 0.2 0.24 11.7 0.1 2.2 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Hpr_kinase_N PF02603.16 gi|292655159|ref|YP_003535056.1| - 0.092 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus DUF1611 PF07755.11 gi|292655159|ref|YP_003535056.1| - 0.1 11.8 2.7 6.2 6.1 0.9 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain ATP-grasp_5 PF13549.6 gi|292655160|ref|YP_003535057.1| - 7.1e-75 251.3 0.3 1.2e-74 250.5 0.3 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|292655160|ref|YP_003535057.1| - 4e-51 172.4 0.9 1e-50 171.1 0.2 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|292655160|ref|YP_003535057.1| - 6.1e-24 84.7 0.2 7.5e-23 81.2 0.0 2.7 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|292655160|ref|YP_003535057.1| - 2.5e-10 40.9 0.4 8e-10 39.3 0.4 1.9 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|292655160|ref|YP_003535057.1| - 0.00021 20.9 0.0 0.00047 19.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain DUF2244 PF10003.9 gi|292655161|ref|YP_003535058.1| - 0.048 13.3 2.8 0.053 13.2 2.8 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF4477 PF14780.6 gi|292655161|ref|YP_003535058.1| - 0.057 13.0 0.4 0.061 12.9 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) HemY_N PF07219.13 gi|292655161|ref|YP_003535058.1| - 1.5 9.1 9.4 12 6.1 9.4 1.9 1 1 0 1 1 1 0 HemY protein N-terminus TM_helix PF05552.12 gi|292655162|ref|YP_003535059.1| - 4e-19 68.3 3.1 2e-14 53.3 1.2 3.4 4 0 0 4 4 4 2 Conserved TM helix Zip PF02535.22 gi|292655163|ref|YP_003535060.1| - 9.4e-17 61.2 22.2 8.3e-16 58.1 6.0 2.9 2 1 0 2 2 2 2 ZIP Zinc transporter CDKN3 PF05706.12 gi|292655164|ref|YP_003535061.1| - 0.06 13.0 0.0 0.073 12.7 0.0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) ABC2_membrane PF01061.24 gi|292655165|ref|YP_003535062.1| - 1e-22 80.6 10.9 1e-22 80.6 10.9 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|292655165|ref|YP_003535062.1| - 3.6e-14 52.6 8.2 3.6e-14 52.6 8.2 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|292655165|ref|YP_003535062.1| - 0.00052 20.0 3.9 0.00052 20.0 3.9 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|292655166|ref|YP_003535063.1| - 4.3e-30 105.0 0.0 6.5e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655166|ref|YP_003535063.1| - 2.8e-17 63.5 0.1 3.1e-10 40.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|292655166|ref|YP_003535063.1| - 0.00048 20.7 0.2 0.00071 20.1 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|292655166|ref|YP_003535063.1| - 0.0043 16.8 0.0 0.56 9.9 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|292655166|ref|YP_003535063.1| - 0.005 16.4 0.0 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|292655166|ref|YP_003535063.1| - 0.0071 16.1 0.4 0.014 15.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|292655166|ref|YP_003535063.1| - 0.0091 15.7 0.1 0.024 14.4 0.1 1.7 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|292655166|ref|YP_003535063.1| - 0.011 15.8 0.0 0.02 15.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|292655166|ref|YP_003535063.1| - 0.017 14.5 0.0 0.49 9.8 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|292655166|ref|YP_003535063.1| - 0.019 14.7 0.1 0.3 10.8 0.2 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 gi|292655166|ref|YP_003535063.1| - 0.02 14.9 0.1 0.042 13.8 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|292655166|ref|YP_003535063.1| - 0.025 15.0 0.3 0.074 13.5 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|292655166|ref|YP_003535063.1| - 0.043 13.7 0.1 0.072 13.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|292655166|ref|YP_003535063.1| - 0.052 13.7 0.2 0.073 13.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|292655166|ref|YP_003535063.1| - 0.061 13.7 0.4 0.11 12.9 0.4 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|292655166|ref|YP_003535063.1| - 0.11 12.7 0.7 0.25 11.6 0.5 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|292655166|ref|YP_003535063.1| - 0.13 11.9 0.0 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|292655166|ref|YP_003535063.1| - 0.14 12.5 0.1 0.2 11.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|292655166|ref|YP_003535063.1| - 0.15 11.4 0.2 0.31 10.4 0.2 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI GSDH PF07995.11 gi|292655167|ref|YP_003535064.1| - 5.7e-32 111.3 0.0 9.9e-32 110.5 0.0 1.4 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.11 gi|292655167|ref|YP_003535064.1| - 3.3e-05 23.6 0.2 0.46 10.9 0.0 3.9 3 0 0 3 3 3 2 Two component regulator propeller TAT_signal PF10518.9 gi|292655167|ref|YP_003535064.1| - 0.054 13.4 6.6 0.2 11.5 6.6 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655167|ref|YP_003535064.1| - 0.089 12.2 0.9 0.3 10.5 0.2 2.3 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NHL PF01436.21 gi|292655167|ref|YP_003535064.1| - 1.3 9.2 5.0 87 3.4 0.3 4.9 5 0 0 5 5 5 0 NHL repeat GFO_IDH_MocA PF01408.22 gi|292655168|ref|YP_003535065.1| - 1.4e-21 77.5 0.0 3.4e-21 76.3 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|292655168|ref|YP_003535065.1| - 3.7e-06 26.9 0.1 7.3e-06 26.0 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Aldo_ket_red PF00248.21 gi|292655169|ref|YP_003535066.1| - 9e-68 228.6 0.0 1.1e-67 228.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|292655169|ref|YP_003535066.1| - 0.13 10.8 0.0 0.19 10.2 0.0 1.2 1 0 0 1 1 1 0 Phage Terminase YdjM PF04307.14 gi|292655170|ref|YP_003535067.1| - 2.5e-08 33.4 2.8 3.6e-08 32.9 2.8 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4407 PF14362.6 gi|292655170|ref|YP_003535067.1| - 0.014 14.8 1.1 0.021 14.2 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Rdx PF10262.9 gi|292655171|ref|YP_003535068.1| - 1.9e-16 60.0 0.0 2e-16 59.9 0.0 1.0 1 0 0 1 1 1 1 Rdx family DUF2387 PF09526.10 gi|292655171|ref|YP_003535068.1| - 0.071 13.3 0.0 0.11 12.7 0.0 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) UbiA PF01040.18 gi|292655173|ref|YP_003535070.1| - 1.9e-52 178.1 25.5 1.9e-52 178.1 25.5 2.5 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|292655173|ref|YP_003535070.1| - 3.4e-09 36.2 19.2 3.9e-08 32.7 9.4 4.5 3 2 2 5 5 5 3 Cytochrome oxidase assembly protein Chon_Sulph_att PF06566.11 gi|292655173|ref|YP_003535070.1| - 0.22 11.4 5.2 0.48 10.3 5.2 1.6 1 1 0 1 1 1 0 Chondroitin sulphate attachment domain COX2 PF00116.20 gi|292655174|ref|YP_003535071.1| - 2e-21 76.1 2.5 1.3e-20 73.5 0.1 2.3 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|292655174|ref|YP_003535071.1| - 7.4e-13 48.5 1.1 1.5e-12 47.5 1.1 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|292655174|ref|YP_003535071.1| - 0.00078 19.5 0.0 0.0015 18.6 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain TrbC PF04956.13 gi|292655174|ref|YP_003535071.1| - 0.62 10.3 8.8 3.3 8.0 8.9 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family CTP_transf_like PF01467.26 gi|292655175|ref|YP_003535072.1| - 1e-13 51.7 0.1 1.1e-13 51.6 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|292655175|ref|YP_003535072.1| - 0.14 12.0 2.4 0.52 10.2 0.3 2.3 1 1 2 3 3 3 0 FAD synthetase Prok-JAB PF14464.6 gi|292655176|ref|YP_003535073.1| - 2.4e-09 37.0 0.0 3.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|292655176|ref|YP_003535073.1| - 0.0059 16.6 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 RadC-like JAB domain JAB PF01398.21 gi|292655176|ref|YP_003535073.1| - 0.1 12.6 0.0 0.87 9.6 0.0 2.0 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Fructosamin_kin PF03881.14 gi|292655177|ref|YP_003535074.1| - 9.4e-48 162.9 0.0 1.2e-47 162.5 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|292655177|ref|YP_003535074.1| - 1.1e-16 61.5 8.6 1.4e-16 61.1 8.6 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|292655177|ref|YP_003535074.1| - 0.073 12.7 0.0 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 RIO1 family tRNA_anti-codon PF01336.25 gi|292655178|ref|YP_003535075.1| - 3.4e-07 30.2 0.3 6.8e-07 29.2 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|292655178|ref|YP_003535075.1| - 6.5e-05 23.2 0.3 6.5e-05 23.2 0.3 2.2 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|292655178|ref|YP_003535075.1| - 0.0038 17.4 0.3 0.0081 16.4 0.3 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-like PF12869.7 gi|292655178|ref|YP_003535075.1| - 0.2 11.2 0.1 0.42 10.2 0.1 1.4 1 0 0 1 1 1 0 tRNA_anti-like PLDc_2 PF13091.6 gi|292655179|ref|YP_003535076.1| - 4.6e-38 130.1 0.0 2.1e-21 76.2 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|292655179|ref|YP_003535076.1| - 3e-07 30.3 0.2 0.00018 21.5 0.2 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|292655179|ref|YP_003535076.1| - 0.0004 20.0 0.0 0.27 10.8 0.0 2.4 2 0 0 2 2 2 2 Polyphosphate kinase C-terminal domain 1 Regulator_TrmB PF11495.8 gi|292655179|ref|YP_003535076.1| - 0.00092 18.5 0.1 0.24 10.6 0.0 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB HEAT_2 PF13646.6 gi|292655180|ref|YP_003535077.1| - 1e-21 77.1 6.6 6.3e-12 45.7 6.0 3.2 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|292655180|ref|YP_003535077.1| - 9.5e-15 53.7 6.3 0.00013 22.3 0.2 6.8 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|292655180|ref|YP_003535077.1| - 3e-07 30.1 0.4 0.43 11.0 0.2 3.9 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|292655180|ref|YP_003535077.1| - 6.1e-07 29.8 0.7 0.019 15.4 0.2 3.2 2 0 0 2 2 2 2 HEAT-like repeat Arm PF00514.23 gi|292655180|ref|YP_003535077.1| - 0.0025 17.8 0.0 2.7 8.1 0.0 3.4 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF2730 PF10805.8 gi|292655180|ref|YP_003535077.1| - 0.044 13.9 0.3 0.12 12.4 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DNA_alkylation PF08713.11 gi|292655180|ref|YP_003535077.1| - 0.061 13.0 0.1 0.22 11.2 0.0 1.9 1 1 1 2 2 2 0 DNA alkylation repair enzyme YbaB_DNA_bd PF02575.16 gi|292655180|ref|YP_003535077.1| - 1.3 9.3 8.3 0.44 10.8 1.6 3.4 2 1 1 3 3 3 0 YbaB/EbfC DNA-binding family CN_hydrolase PF00795.22 gi|292655181|ref|YP_003535078.1| - 3.7e-27 95.3 0.0 4.3e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ank_5 PF13857.6 gi|292655181|ref|YP_003535078.1| - 0.055 13.8 0.1 7 7.1 0.0 2.4 2 0 0 2 2 2 0 Ankyrin repeats (many copies) Oxidored_FMN PF00724.20 gi|292655182|ref|YP_003535079.1| - 9.5e-68 229.0 0.0 1.1e-67 228.8 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|292655182|ref|YP_003535079.1| - 0.06 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein ABC_tran_CTD PF16326.5 gi|292655183|ref|YP_003535080.1| - 0.12 12.7 8.0 3.7 7.9 2.4 3.2 3 1 0 4 4 4 0 ABC transporter C-terminal domain Ndc1_Nup PF09531.10 gi|292655183|ref|YP_003535080.1| - 0.15 10.7 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup SLX9 PF15341.6 gi|292655183|ref|YP_003535080.1| - 1.6 9.1 5.3 8.6 6.8 0.2 2.4 2 0 0 2 2 2 0 Ribosome biogenesis protein SLX9 OB_aCoA_assoc PF01796.17 gi|292655184|ref|YP_003535081.1| - 1e-08 35.1 0.7 1.6e-08 34.4 0.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|292655185|ref|YP_003535082.1| - 1.2e-55 188.7 0.0 1.6e-55 188.2 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|292655185|ref|YP_003535082.1| - 3.9e-08 33.0 0.0 8.1e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|292655185|ref|YP_003535082.1| - 5.8e-05 23.1 0.2 0.5 10.4 0.1 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|292655185|ref|YP_003535082.1| - 0.27 10.8 4.4 0.81 9.2 1.5 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain MttA_Hcf106 PF02416.16 gi|292655187|ref|YP_003535084.1| - 8e-15 53.9 0.1 8.9e-15 53.8 0.1 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family CAP18_C PF12153.8 gi|292655187|ref|YP_003535084.1| - 0.069 13.0 4.8 0.1 12.5 4.8 1.2 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) adh_short_C2 PF13561.6 gi|292655188|ref|YP_003535085.1| - 5.2e-69 232.4 1.4 6.3e-69 232.1 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|292655188|ref|YP_003535085.1| - 1.2e-53 181.5 0.6 1.5e-53 181.2 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|292655188|ref|YP_003535085.1| - 7.6e-12 45.5 0.1 1.1e-11 45.0 0.1 1.1 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|292655188|ref|YP_003535085.1| - 6.8e-05 22.0 0.0 9.4e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|292655188|ref|YP_003535085.1| - 0.0003 20.3 0.1 0.00041 19.9 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|292655188|ref|YP_003535085.1| - 0.0005 20.0 0.6 0.0014 18.5 0.6 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|292655188|ref|YP_003535085.1| - 0.051 12.7 0.2 0.073 12.2 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|292655188|ref|YP_003535085.1| - 0.052 13.4 1.2 0.11 12.4 1.2 1.8 1 1 0 1 1 1 0 NAD(P)H-binding DUF4382 PF14321.6 gi|292655189|ref|YP_003535086.1| - 2.4e-22 79.7 21.8 7.4e-22 78.1 13.5 3.3 2 2 0 2 2 2 1 Domain of unknown function (DUF4382) DUF4198 PF10670.9 gi|292655189|ref|YP_003535086.1| - 0.011 16.1 0.4 0.011 16.1 0.4 3.5 2 2 2 4 4 4 0 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|292655189|ref|YP_003535086.1| - 0.11 12.5 0.3 0.11 12.5 0.3 2.6 2 0 0 2 2 2 0 CarboxypepD_reg-like domain YtkA PF13115.6 gi|292655189|ref|YP_003535086.1| - 0.39 11.3 0.1 0.39 11.3 0.1 3.4 3 1 1 4 4 4 0 YtkA-like SPX PF03105.19 gi|292655189|ref|YP_003535086.1| - 1.2 9.0 7.3 0.12 12.2 2.4 1.7 2 0 0 2 2 2 0 SPX domain Pyr_redox_2 PF07992.14 gi|292655190|ref|YP_003535087.1| - 4.1e-28 98.5 0.0 5.2e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292655190|ref|YP_003535087.1| - 6.1e-12 45.4 0.0 3e-07 30.0 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292655190|ref|YP_003535087.1| - 1.2e-06 29.0 0.0 0.0045 17.5 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292655190|ref|YP_003535087.1| - 4.2e-05 22.8 2.6 0.0013 18.0 0.7 2.3 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|292655190|ref|YP_003535087.1| - 0.00011 21.4 0.2 0.00025 20.3 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|292655190|ref|YP_003535087.1| - 0.00013 21.5 0.5 0.0002 20.8 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|292655190|ref|YP_003535087.1| - 0.00016 21.4 3.2 0.0013 18.4 1.6 2.5 1 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292655190|ref|YP_003535087.1| - 0.00053 18.8 0.1 0.0037 16.0 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|292655190|ref|YP_003535087.1| - 0.00056 19.3 0.5 0.00092 18.5 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.6 gi|292655190|ref|YP_003535087.1| - 0.004 16.3 0.0 0.02 14.1 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|292655190|ref|YP_003535087.1| - 0.0057 16.9 2.5 0.011 16.0 1.3 2.1 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|292655190|ref|YP_003535087.1| - 0.02 14.2 0.1 0.035 13.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|292655190|ref|YP_003535087.1| - 0.022 14.7 0.8 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|292655190|ref|YP_003535087.1| - 0.061 12.6 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Thi4 family zf-C2H2_jaz PF12171.8 gi|292655190|ref|YP_003535087.1| - 0.15 12.4 0.3 0.29 11.5 0.3 1.5 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Methyltransf_25 PF13649.6 gi|292655191|ref|YP_003535088.1| - 7.7e-20 71.4 0.5 1.6e-19 70.4 0.3 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655191|ref|YP_003535088.1| - 3.4e-19 69.3 0.4 5.4e-19 68.6 0.4 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655191|ref|YP_003535088.1| - 5.2e-13 49.1 0.0 6.6e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292655191|ref|YP_003535088.1| - 4.1e-10 39.4 0.0 5.3e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|292655191|ref|YP_003535088.1| - 6.9e-10 39.6 0.3 1.5e-09 38.5 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655191|ref|YP_003535088.1| - 3.4e-07 30.3 0.0 4.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|292655191|ref|YP_003535088.1| - 1.2e-06 28.2 0.0 1.7e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|292655191|ref|YP_003535088.1| - 3.2e-05 22.7 0.0 4.1e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|292655191|ref|YP_003535088.1| - 0.00057 19.6 0.0 0.00074 19.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|292655191|ref|YP_003535088.1| - 0.00082 18.4 0.0 0.001 18.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|292655191|ref|YP_003535088.1| - 0.0051 16.5 0.0 0.0092 15.7 0.0 1.3 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|292655191|ref|YP_003535088.1| - 0.0068 16.4 0.0 0.0099 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|292655191|ref|YP_003535088.1| - 0.0078 15.6 0.0 0.0088 15.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_17 PF12692.7 gi|292655191|ref|YP_003535088.1| - 0.016 15.2 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase Methyltransf_33 PF10017.9 gi|292655191|ref|YP_003535088.1| - 0.026 13.7 0.1 0.067 12.3 0.0 1.7 2 0 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent MTS PF05175.14 gi|292655191|ref|YP_003535088.1| - 0.051 13.1 0.1 0.094 12.3 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|292655191|ref|YP_003535088.1| - 0.075 12.3 0.0 0.099 11.9 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|292655191|ref|YP_003535088.1| - 0.11 12.3 0.0 0.53 10.1 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_4 PF02390.17 gi|292655191|ref|YP_003535088.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|292655191|ref|YP_003535088.1| - 0.24 11.1 0.0 0.38 10.5 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) T2SSF PF00482.23 gi|292655192|ref|YP_003535089.1| - 7.3e-36 122.9 17.2 5.1e-21 74.9 2.1 2.9 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|292655192|ref|YP_003535089.1| - 0.0094 14.8 0.4 1.1 7.9 0.0 3.0 3 0 0 3 3 3 2 Predicted membrane protein (DUF2207) T2SSE PF00437.20 gi|292655193|ref|YP_003535090.1| - 1.9e-45 155.1 0.0 2.5e-45 154.7 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein SAP PF02037.27 gi|292655193|ref|YP_003535090.1| - 0.16 11.7 0.3 24 4.8 0.0 2.5 2 0 0 2 2 2 0 SAP domain AAA_7 PF12775.7 gi|292655193|ref|YP_003535090.1| - 0.18 11.3 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF4282 PF14110.6 gi|292655194|ref|YP_003535091.1| - 0.049 14.4 2.8 0.049 14.4 2.8 2.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4282) Cytochrom_B558a PF05038.13 gi|292655194|ref|YP_003535091.1| - 6.4 6.3 6.4 16 5.0 6.4 1.7 1 1 0 1 1 1 0 Cytochrome Cytochrome b558 alpha-subunit Cupin_2 PF07883.11 gi|292655195|ref|YP_003535092.1| - 9.5e-12 44.5 0.0 1.6e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|292655195|ref|YP_003535092.1| - 0.00026 20.6 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_4 PF08007.12 gi|292655195|ref|YP_003535092.1| - 0.00055 19.5 0.1 0.00063 19.3 0.1 1.1 1 0 0 1 1 1 1 Cupin superfamily protein Cupin_6 PF12852.7 gi|292655195|ref|YP_003535092.1| - 0.00067 19.4 0.1 0.00073 19.3 0.1 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|292655195|ref|YP_003535092.1| - 0.00083 19.0 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|292655195|ref|YP_003535092.1| - 0.0012 18.7 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain cNMP_binding PF00027.29 gi|292655195|ref|YP_003535092.1| - 0.0016 18.4 0.0 0.0026 17.8 0.0 1.3 1 1 0 1 1 1 1 Cyclic nucleotide-binding domain Cupin_7 PF12973.7 gi|292655195|ref|YP_003535092.1| - 0.028 14.3 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain 3-HAO PF06052.12 gi|292655195|ref|YP_003535092.1| - 0.14 11.8 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Pirin PF02678.16 gi|292655195|ref|YP_003535092.1| - 0.15 12.1 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Pirin ARD PF03079.14 gi|292655195|ref|YP_003535092.1| - 0.16 12.2 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family UDG PF03167.19 gi|292655197|ref|YP_003535094.1| - 1.4e-11 44.6 0.0 1.7e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lactamase_B PF00753.27 gi|292655198|ref|YP_003535095.1| - 8.1e-11 42.3 4.0 1e-10 42.0 4.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|292655198|ref|YP_003535095.1| - 0.00017 21.2 0.0 0.00019 21.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DnaJ PF00226.31 gi|292655199|ref|YP_003535096.1| - 1.4e-21 76.3 1.0 2e-21 75.9 1.0 1.2 1 0 0 1 1 1 1 DnaJ domain SOG2 PF10428.9 gi|292655199|ref|YP_003535096.1| - 0.062 12.5 14.4 0.068 12.4 14.4 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein DUF3806 PF12713.7 gi|292655199|ref|YP_003535096.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) DUF572 PF04502.13 gi|292655199|ref|YP_003535096.1| - 2.3 7.8 7.5 3.1 7.4 7.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) SPX PF03105.19 gi|292655199|ref|YP_003535096.1| - 7 6.5 22.6 9.1 6.1 22.6 1.2 1 0 0 1 1 1 0 SPX domain Lactamase_B PF00753.27 gi|292655200|ref|YP_003535097.1| - 4.6e-22 79.0 11.9 1.7e-21 77.1 11.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292655200|ref|YP_003535097.1| - 9.9e-06 25.2 4.8 4.9e-05 22.9 1.8 2.6 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292655200|ref|YP_003535097.1| - 0.15 11.9 0.0 0.37 10.7 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain RNA_pol_L_2 PF13656.6 gi|292655201|ref|YP_003535098.1| - 2.1e-16 59.4 0.0 2.6e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|292655201|ref|YP_003535098.1| - 3.4e-05 23.2 0.0 5.8e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1684 PF07920.11 gi|292655202|ref|YP_003535099.1| - 3.6e-51 173.1 0.1 4.5e-51 172.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) His_biosynth PF00977.21 gi|292655203|ref|YP_003535100.1| - 1.8e-81 273.0 0.1 2e-81 272.8 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|292655203|ref|YP_003535100.1| - 1.3e-09 37.6 0.0 1.7e-06 27.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|292655203|ref|YP_003535100.1| - 1e-07 31.5 0.1 0.00023 20.5 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|292655203|ref|YP_003535100.1| - 3.4e-07 30.0 0.3 7.3e-05 22.3 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|292655203|ref|YP_003535100.1| - 0.00055 19.4 0.0 0.0015 18.0 0.0 1.6 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|292655203|ref|YP_003535100.1| - 0.00096 18.4 0.0 0.0063 15.8 0.0 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|292655203|ref|YP_003535100.1| - 0.014 14.9 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 PcrB family IMPDH PF00478.25 gi|292655203|ref|YP_003535100.1| - 0.023 13.7 0.3 0.043 12.8 0.0 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|292655203|ref|YP_003535100.1| - 0.026 13.8 0.1 0.22 10.8 0.0 2.1 2 1 0 2 2 2 0 Thiamine monophosphate synthase Glu_synthase PF01645.17 gi|292655203|ref|YP_003535100.1| - 0.041 13.0 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase IGPS PF00218.21 gi|292655203|ref|YP_003535100.1| - 0.19 10.9 0.0 0.45 9.7 0.0 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Pex24p PF06398.11 gi|292655204|ref|YP_003535101.1| - 1.5 7.7 5.4 1.5 7.7 5.4 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin ADH_zinc_N PF00107.26 gi|292655206|ref|YP_003535103.1| - 1.4e-30 106.0 0.6 8.3e-30 103.4 0.1 2.3 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|292655206|ref|YP_003535103.1| - 1e-26 94.5 0.6 2.4e-26 93.4 0.3 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|292655206|ref|YP_003535103.1| - 4.5e-10 39.4 0.0 1e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Importin_rep_3 PF18806.1 gi|292655206|ref|YP_003535103.1| - 0.19 11.8 0.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 Importin 13 repeat AIRS PF00586.24 gi|292655207|ref|YP_003535104.1| - 1.4e-40 137.9 13.1 3.5e-24 85.3 0.3 3.5 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|292655207|ref|YP_003535104.1| - 1.5e-38 132.4 13.1 1.1e-29 103.6 1.2 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|292655207|ref|YP_003535104.1| - 1.9e-06 28.3 0.0 4.3e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|292655207|ref|YP_003535104.1| - 0.046 14.1 0.7 1.1 9.7 0.0 2.7 2 0 0 2 2 2 0 GHMP kinases C terminal PHP_C PF13263.6 gi|292655208|ref|YP_003535105.1| - 1.6e-21 75.8 1.5 7.1e-21 73.7 0.6 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|292655208|ref|YP_003535105.1| - 6.9e-09 36.2 0.0 7.2e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|292655209|ref|YP_003535106.1| - 4.6e-32 112.1 5.1 7.3e-29 101.5 5.1 2.1 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|292655209|ref|YP_003535106.1| - 0.16 11.1 0.1 0.26 10.4 0.1 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|292655209|ref|YP_003535106.1| - 0.18 10.5 0.1 0.28 9.9 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NUDIX PF00293.28 gi|292655210|ref|YP_003535107.1| - 1.6e-11 44.4 0.1 2.2e-11 43.9 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.19 gi|292655211|ref|YP_003535108.1| - 9.1e-42 141.0 0.1 5.8e-20 71.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292655211|ref|YP_003535108.1| - 1.8e-19 69.0 4.4 3.5e-19 68.0 4.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|292655211|ref|YP_003535108.1| - 0.0014 18.7 0.0 0.77 9.9 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|292655211|ref|YP_003535108.1| - 0.0018 17.8 4.8 0.016 14.7 0.0 3.9 4 0 0 4 4 4 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|292655211|ref|YP_003535108.1| - 0.019 14.6 0.5 0.035 13.8 0.5 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|292655211|ref|YP_003535108.1| - 0.025 14.3 1.3 0.043 13.5 1.3 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_N PF00134.23 gi|292655211|ref|YP_003535108.1| - 0.043 13.6 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain zf_UBZ PF18439.1 gi|292655211|ref|YP_003535108.1| - 0.058 13.0 1.9 6.4 6.5 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|292655211|ref|YP_003535108.1| - 0.084 12.9 0.7 0.15 12.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|292655211|ref|YP_003535108.1| - 0.099 12.6 1.1 0.2 11.6 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|292655211|ref|YP_003535108.1| - 0.11 13.0 0.7 0.11 13.0 0.7 1.8 2 0 0 2 2 1 0 Restriction alleviation protein Lar UMPH-1 PF05822.12 gi|292655211|ref|YP_003535108.1| - 0.12 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) zf-ribbon_3 PF13248.6 gi|292655211|ref|YP_003535108.1| - 0.13 11.7 3.8 0.61 9.6 3.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292655211|ref|YP_003535108.1| - 0.15 12.0 1.3 0.24 11.4 0.3 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF4503 PF14951.6 gi|292655211|ref|YP_003535108.1| - 0.2 10.1 0.6 0.32 9.4 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Zn-ribbon_8 PF09723.10 gi|292655211|ref|YP_003535108.1| - 0.33 11.1 6.2 0.63 10.2 1.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|292655211|ref|YP_003535108.1| - 0.36 10.8 4.8 0.86 9.6 4.8 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Glu-tRNAGln PF02686.15 gi|292655212|ref|YP_003535109.1| - 6e-15 55.3 3.3 6e-15 55.3 3.3 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|292655213|ref|YP_003535110.1| - 5.5e-149 497.0 0.5 6.5e-149 496.7 0.5 1.0 1 0 0 1 1 1 1 Amidase TrkA_N PF02254.18 gi|292655214|ref|YP_003535111.1| - 4.6e-27 94.6 2.6 8e-27 93.8 2.6 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|292655214|ref|YP_003535111.1| - 1.6e-13 50.2 0.7 3e-12 46.2 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|292655214|ref|YP_003535111.1| - 2.7e-06 27.9 1.1 2.2e-05 24.9 0.5 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|292655214|ref|YP_003535111.1| - 1.2e-05 25.7 0.5 2.2e-05 24.8 0.5 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|292655214|ref|YP_003535111.1| - 0.00011 22.4 0.2 0.00018 21.7 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ADH_zinc_N PF00107.26 gi|292655214|ref|YP_003535111.1| - 0.00016 21.7 0.2 0.048 13.7 0.8 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|292655214|ref|YP_003535111.1| - 0.00023 21.1 0.4 0.00042 20.2 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|292655214|ref|YP_003535111.1| - 0.00024 21.3 0.1 0.00042 20.5 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|292655214|ref|YP_003535111.1| - 0.00089 19.3 0.2 0.0017 18.4 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|292655214|ref|YP_003535111.1| - 0.0011 19.4 0.1 0.0021 18.6 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain GFO_IDH_MocA PF01408.22 gi|292655214|ref|YP_003535111.1| - 0.0017 19.2 0.5 0.0033 18.3 0.5 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 gi|292655214|ref|YP_003535111.1| - 0.0019 17.8 1.1 0.0092 15.6 0.4 2.1 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|292655214|ref|YP_003535111.1| - 0.003 18.1 1.5 0.024 15.2 0.9 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_3 PF13377.6 gi|292655214|ref|YP_003535111.1| - 0.005 17.2 0.2 0.0076 16.6 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain ApbA PF02558.16 gi|292655214|ref|YP_003535111.1| - 0.017 14.8 0.1 0.042 13.5 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|292655214|ref|YP_003535111.1| - 0.03 14.2 1.7 0.052 13.4 1.6 1.6 1 1 0 1 1 1 0 NAD(P)H-binding NmrA PF05368.13 gi|292655214|ref|YP_003535111.1| - 0.035 13.6 0.5 0.063 12.8 0.5 1.4 1 0 0 1 1 1 0 NmrA-like family TPALS PF18178.1 gi|292655214|ref|YP_003535111.1| - 0.039 13.4 0.2 0.062 12.7 0.2 1.2 1 0 0 1 1 1 0 TIR- and PNP-associating SLOG family 2-Hacid_dh_C PF02826.19 gi|292655214|ref|YP_003535111.1| - 0.05 13.0 0.1 0.079 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|292655214|ref|YP_003535111.1| - 0.053 12.8 0.6 0.12 11.6 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|292655214|ref|YP_003535111.1| - 0.097 11.9 2.4 0.18 11.1 2.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain KR PF08659.10 gi|292655214|ref|YP_003535111.1| - 0.11 12.4 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 KR domain NAD_Gly3P_dh_N PF01210.23 gi|292655214|ref|YP_003535111.1| - 0.11 12.4 0.2 0.18 11.8 0.2 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DRTGG PF07085.12 gi|292655214|ref|YP_003535111.1| - 0.16 11.8 2.9 0.53 10.1 1.1 2.6 2 1 1 3 3 3 0 DRTGG domain TrkH PF02386.16 gi|292655215|ref|YP_003535112.1| - 9.5e-104 347.6 8.9 1.3e-103 347.2 8.9 1.1 1 0 0 1 1 1 1 Cation transport protein TrkH PF02386.16 gi|292655216|ref|YP_003535113.1| - 1.1e-70 238.5 5.2 1.9e-70 237.7 5.2 1.2 1 0 0 1 1 1 1 Cation transport protein DUF5353 PF17304.2 gi|292655216|ref|YP_003535113.1| - 0.11 12.3 1.3 0.39 10.5 0.1 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5353) TrkA_N PF02254.18 gi|292655217|ref|YP_003535114.1| - 1.2e-50 170.6 9.8 4.5e-29 101.1 1.3 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|292655217|ref|YP_003535114.1| - 1.3e-30 105.0 5.9 1.7e-14 53.4 0.1 3.3 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|292655217|ref|YP_003535114.1| - 1e-11 45.2 1.0 4.5e-06 27.0 0.5 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|292655217|ref|YP_003535114.1| - 1.5e-09 38.1 0.2 0.00032 20.8 0.1 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|292655217|ref|YP_003535114.1| - 2e-08 34.3 1.6 0.0033 17.3 0.4 2.4 2 0 0 2 2 2 2 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|292655217|ref|YP_003535114.1| - 3.1e-08 33.9 1.3 0.00074 19.8 0.6 2.9 2 2 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|292655217|ref|YP_003535114.1| - 3.8e-06 27.4 0.0 0.0012 19.3 0.0 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|292655217|ref|YP_003535114.1| - 2.1e-05 25.0 0.6 0.06 13.9 0.0 2.6 2 0 0 2 2 2 2 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|292655217|ref|YP_003535114.1| - 3.9e-05 23.3 0.0 0.00017 21.2 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|292655217|ref|YP_003535114.1| - 4e-05 23.0 0.0 0.031 13.5 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|292655217|ref|YP_003535114.1| - 0.00041 19.7 1.3 0.015 14.5 1.3 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|292655217|ref|YP_003535114.1| - 0.00044 20.2 0.1 0.047 13.6 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Castor_Poll_mid PF06241.12 gi|292655217|ref|YP_003535114.1| - 0.00069 19.6 0.0 0.22 11.5 0.0 2.6 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel AlaDh_PNT_C PF01262.21 gi|292655217|ref|YP_003535114.1| - 0.00074 18.9 0.1 0.15 11.4 0.2 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|292655217|ref|YP_003535114.1| - 0.00094 18.8 1.0 0.019 14.5 0.1 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|292655217|ref|YP_003535114.1| - 0.0019 18.7 0.3 1.7 9.3 0.0 3.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|292655217|ref|YP_003535114.1| - 0.002 17.8 0.0 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|292655217|ref|YP_003535114.1| - 0.0024 17.2 0.0 2.2 7.6 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|292655217|ref|YP_003535114.1| - 0.0032 17.4 0.0 0.31 11.0 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.11 gi|292655217|ref|YP_003535114.1| - 0.0087 15.6 0.1 0.025 14.1 0.0 1.9 3 0 0 3 3 2 1 Protein of unknown function (DUF1188) NAD_binding_2 PF03446.15 gi|292655217|ref|YP_003535114.1| - 0.011 15.9 0.0 0.41 10.8 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase HEM4 PF02602.15 gi|292655217|ref|YP_003535114.1| - 0.022 14.1 0.2 0.11 11.8 0.0 2.2 2 1 1 3 3 3 0 Uroporphyrinogen-III synthase HemD adh_short PF00106.25 gi|292655217|ref|YP_003535114.1| - 0.034 13.6 0.1 0.4 10.1 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase DUF2325 PF10087.9 gi|292655217|ref|YP_003535114.1| - 0.04 14.0 0.3 4.9 7.3 0.0 2.8 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2325) NAD_binding_8 PF13450.6 gi|292655217|ref|YP_003535114.1| - 0.047 13.9 0.0 3.5 7.9 0.0 2.8 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GFO_IDH_MocA PF01408.22 gi|292655217|ref|YP_003535114.1| - 0.064 14.1 0.1 2.3 9.1 0.1 2.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|292655217|ref|YP_003535114.1| - 0.14 12.8 0.2 2.5 8.8 0.1 2.6 2 0 0 2 2 2 0 PglD N-terminal domain Rossmann-like PF10727.9 gi|292655217|ref|YP_003535114.1| - 0.39 10.6 3.5 2.9 7.8 0.8 2.9 2 2 0 2 2 2 0 Rossmann-like domain ThiF PF00899.21 gi|292655217|ref|YP_003535114.1| - 7.6 5.8 7.1 22 4.3 0.2 3.5 2 2 2 4 4 4 0 ThiF family Polyketide_cyc2 PF10604.9 gi|292655218|ref|YP_003535115.1| - 1.7e-12 47.8 0.6 2.3e-12 47.4 0.6 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|292655218|ref|YP_003535115.1| - 2.8e-09 37.3 0.1 6.4e-09 36.1 0.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|292655218|ref|YP_003535115.1| - 0.03 14.6 0.1 0.045 14.0 0.1 1.3 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Pyr_redox_2 PF07992.14 gi|292655220|ref|YP_003535117.1| - 7e-13 48.5 3.7 3.4e-06 26.5 0.5 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292655220|ref|YP_003535117.1| - 2.8e-08 33.3 3.4 9.6e-07 28.2 0.3 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|292655220|ref|YP_003535117.1| - 2.8e-06 27.2 1.2 0.0017 18.0 0.2 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|292655220|ref|YP_003535117.1| - 6.6e-05 23.1 0.0 0.00014 22.0 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|292655220|ref|YP_003535117.1| - 0.0013 18.1 2.4 0.0045 16.3 0.6 2.2 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|292655220|ref|YP_003535117.1| - 0.0028 16.8 0.1 0.0044 16.1 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|292655220|ref|YP_003535117.1| - 0.0049 16.1 0.1 0.0081 15.4 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|292655220|ref|YP_003535117.1| - 0.0053 16.1 0.9 0.0053 16.1 0.9 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|292655220|ref|YP_003535117.1| - 0.0083 15.4 0.0 0.11 11.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|292655220|ref|YP_003535117.1| - 0.02 14.0 0.4 0.093 11.8 0.2 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|292655220|ref|YP_003535117.1| - 0.024 13.9 0.3 0.067 12.5 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|292655220|ref|YP_003535117.1| - 0.036 12.8 0.1 0.06 12.0 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox PF00070.27 gi|292655220|ref|YP_003535117.1| - 0.039 14.5 0.1 0.11 13.1 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|292655220|ref|YP_003535117.1| - 0.1 11.4 4.2 0.9 8.3 1.1 2.4 2 1 1 3 3 3 0 Tryptophan halogenase MCRA PF06100.11 gi|292655220|ref|YP_003535117.1| - 0.25 10.1 0.1 0.39 9.4 0.1 1.3 1 0 0 1 1 1 0 MCRA family DFP PF04127.15 gi|292655221|ref|YP_003535118.1| - 3.1e-44 151.0 7.5 2.4e-43 148.2 4.2 2.4 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|292655221|ref|YP_003535118.1| - 5.6e-37 126.9 0.5 1e-36 126.1 0.5 1.4 1 0 0 1 1 1 1 Flavoprotein Usp PF00582.26 gi|292655221|ref|YP_003535118.1| - 0.0084 16.6 3.3 0.0084 16.6 3.3 2.8 3 0 0 3 3 3 1 Universal stress protein family Glyco_trans_4_4 PF13579.6 gi|292655221|ref|YP_003535118.1| - 0.53 10.7 17.0 31 5.0 2.9 3.3 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain PhaG_MnhG_YufB PF03334.14 gi|292655222|ref|YP_003535119.1| - 4.1e-25 87.8 8.6 4.1e-25 87.8 8.6 1.4 1 1 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|292655223|ref|YP_003535120.1| - 5.4e-20 71.5 4.4 5.4e-20 71.5 4.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|292655224|ref|YP_003535121.1| - 8.1e-42 142.4 0.4 9.2e-42 142.3 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|292655225|ref|YP_003535122.1| - 1.1e-51 175.8 16.2 1.5e-50 172.1 16.2 2.4 1 1 0 1 1 1 1 Proton-conducting membrane transporter Phage_tail_X PF05489.12 gi|292655225|ref|YP_003535122.1| - 0.11 12.1 2.7 0.37 10.5 0.1 2.8 3 0 0 3 3 3 0 Phage Tail Protein X DUF2417 PF10329.9 gi|292655225|ref|YP_003535122.1| - 1.3 8.4 7.8 2.2 7.6 3.5 2.7 2 0 0 2 2 2 0 Region of unknown function (DUF2417) Oxidored_q2 PF00420.24 gi|292655226|ref|YP_003535123.1| - 1.2e-30 105.2 0.6 1.3e-30 105.1 0.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.13 gi|292655227|ref|YP_003535124.1| - 5.4e-36 123.6 11.3 6.4e-36 123.4 11.3 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Proton_antipo_M PF00361.20 gi|292655228|ref|YP_003535125.1| - 1.1e-67 228.3 20.1 1.1e-67 228.3 20.1 2.7 2 1 1 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|292655228|ref|YP_003535125.1| - 1.6e-15 57.0 13.8 1.6e-15 57.0 13.8 4.7 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|292655228|ref|YP_003535125.1| - 1.3e-11 44.4 0.0 1.3e-11 44.4 0.0 3.5 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_20 PF12840.7 gi|292655229|ref|YP_003535126.1| - 3.2e-08 33.5 1.9 4.2e-08 33.1 1.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|292655229|ref|YP_003535126.1| - 2.2e-07 30.6 0.0 3.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|292655229|ref|YP_003535126.1| - 2.7e-07 30.0 0.1 9.6e-07 28.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292655229|ref|YP_003535126.1| - 8.4e-07 28.8 0.4 1.1e-06 28.4 0.4 1.2 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|292655229|ref|YP_003535126.1| - 6.7e-06 25.8 1.9 1.7e-05 24.5 1.9 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|292655229|ref|YP_003535126.1| - 1.2e-05 25.1 0.1 1.8e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292655229|ref|YP_003535126.1| - 8.8e-05 22.4 0.1 0.00026 20.8 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|292655229|ref|YP_003535126.1| - 0.00017 21.3 0.4 0.00026 20.7 0.4 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|292655229|ref|YP_003535126.1| - 0.00082 19.3 0.1 0.0011 18.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|292655229|ref|YP_003535126.1| - 0.0014 19.1 0.2 0.0019 18.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|292655229|ref|YP_003535126.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_23 PF13384.6 gi|292655229|ref|YP_003535126.1| - 0.014 15.2 0.1 0.023 14.5 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain FUR PF01475.19 gi|292655229|ref|YP_003535126.1| - 0.027 14.6 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Sigma70_r4 PF04545.16 gi|292655229|ref|YP_003535126.1| - 0.031 13.8 0.1 0.045 13.3 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|292655229|ref|YP_003535126.1| - 0.034 13.9 0.7 0.12 12.2 0.7 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family TFIIE_alpha PF02002.17 gi|292655229|ref|YP_003535126.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RP-C PF03428.13 gi|292655229|ref|YP_003535126.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Clr2_transil PF16761.5 gi|292655230|ref|YP_003535127.1| - 0.07 14.0 0.0 0.098 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcription-silencing protein, cryptic loci regulator Clr2 Pribosyltran PF00156.27 gi|292655231|ref|YP_003535128.1| - 4.4e-17 62.1 1.8 6.8e-17 61.4 1.8 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|292655231|ref|YP_003535128.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DJ-1_PfpI PF01965.24 gi|292655232|ref|YP_003535129.1| - 8.8e-14 51.6 0.7 1.3e-12 47.9 0.7 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|292655232|ref|YP_003535129.1| - 1.7e-08 34.4 0.0 9.4e-08 32.0 0.0 2.0 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|292655232|ref|YP_003535129.1| - 0.046 13.3 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HNH_2 PF13391.6 gi|292655233|ref|YP_003535130.1| - 2.1e-07 31.0 0.1 4.8e-07 29.8 0.1 1.7 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|292655233|ref|YP_003535130.1| - 0.0038 17.4 0.6 0.0071 16.5 0.6 1.4 1 0 0 1 1 1 1 HNH endonuclease SAD_SRA PF02182.17 gi|292655233|ref|YP_003535130.1| - 0.0043 16.8 0.1 0.0066 16.2 0.1 1.3 1 0 0 1 1 1 1 SAD/SRA domain HTH_5 PF01022.20 gi|292655234|ref|YP_003535131.1| - 5.2e-05 23.0 0.0 6.8e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292655234|ref|YP_003535131.1| - 0.00014 21.8 0.1 0.00026 21.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|292655234|ref|YP_003535131.1| - 0.0015 18.6 0.4 0.0024 18.0 0.4 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|292655234|ref|YP_003535131.1| - 0.012 15.4 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|292655234|ref|YP_003535131.1| - 0.037 13.9 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|292655234|ref|YP_003535131.1| - 0.079 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain zf-trcl PF13451.6 gi|292655234|ref|YP_003535131.1| - 0.11 12.4 0.8 0.11 12.4 0.8 2.0 1 1 1 2 2 2 0 Probable zinc-ribbon domain HTH_11 PF08279.12 gi|292655234|ref|YP_003535131.1| - 0.12 12.3 0.1 0.4 10.6 0.0 1.8 1 1 1 2 2 2 0 HTH domain Rubredoxin_2 PF18073.1 gi|292655234|ref|YP_003535131.1| - 0.69 9.7 6.5 1.9 8.3 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|292655234|ref|YP_003535131.1| - 3 8.0 8.9 9.6 6.4 0.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NTP_transferase PF00483.23 gi|292655235|ref|YP_003535132.1| - 4.7e-36 124.6 0.0 6.9e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|292655235|ref|YP_003535132.1| - 2e-08 34.8 0.0 2.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|292655235|ref|YP_003535132.1| - 0.074 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FTCD PF02971.14 gi|292655235|ref|YP_003535132.1| - 0.083 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Formiminotransferase domain Hexapep PF00132.24 gi|292655235|ref|YP_003535132.1| - 0.29 10.9 1.0 5.6 6.9 0.3 2.9 2 1 2 4 4 4 0 Bacterial transferase hexapeptide (six repeats) Diphthami_syn_2 PF01902.17 gi|292655236|ref|YP_003535133.1| - 3.3e-54 183.7 0.0 6.3e-54 182.8 0.0 1.4 1 1 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|292655236|ref|YP_003535133.1| - 0.044 13.3 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|292655236|ref|YP_003535133.1| - 0.23 11.0 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|292655237|ref|YP_003535134.1| - 5.1e-18 65.7 0.0 3.8e-14 53.1 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|292655237|ref|YP_003535134.1| - 0.03 13.8 0.0 0.062 12.8 0.0 1.5 2 0 0 2 2 2 0 Diphthamide synthase F_bP_aldolase PF01116.20 gi|292655237|ref|YP_003535134.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II Glutaredoxin PF00462.24 gi|292655239|ref|YP_003535136.1| - 3.3e-15 56.1 0.0 4.8e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Pribosyltran PF00156.27 gi|292655240|ref|YP_003535137.1| - 7.3e-20 71.1 0.0 1.3e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|292655240|ref|YP_003535137.1| - 0.00019 21.1 0.0 0.00042 20.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|292655240|ref|YP_003535137.1| - 0.0029 17.5 0.2 0.1 12.5 0.1 2.5 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.15 gi|292655240|ref|YP_003535137.1| - 0.0069 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|292655240|ref|YP_003535137.1| - 0.026 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|292655240|ref|YP_003535137.1| - 0.028 13.9 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|292655240|ref|YP_003535137.1| - 0.07 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 MarR family PRTase_2 PF15609.6 gi|292655240|ref|YP_003535137.1| - 0.074 12.5 0.2 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase CENP-B_N PF04218.13 gi|292655240|ref|YP_003535137.1| - 0.12 12.0 0.0 0.94 9.2 0.0 2.0 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_Crp_2 PF13545.6 gi|292655240|ref|YP_003535137.1| - 0.15 12.0 0.0 0.4 10.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|292655240|ref|YP_003535137.1| - 0.16 11.8 0.5 0.74 9.6 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Glu_dehyd_C PF16912.5 gi|292655241|ref|YP_003535138.1| - 1.8e-102 341.3 0.0 2.6e-102 340.8 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|292655241|ref|YP_003535138.1| - 1.2e-09 38.0 0.0 1.9e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|292655241|ref|YP_003535138.1| - 3.5e-06 27.0 0.0 6.4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|292655241|ref|YP_003535138.1| - 0.00079 19.3 0.1 0.0017 18.2 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase G-gamma PF00631.22 gi|292655241|ref|YP_003535138.1| - 0.19 11.8 0.0 2.5 8.2 0.0 2.2 2 0 0 2 2 2 0 GGL domain Lyase_1 PF00206.20 gi|292655242|ref|YP_003535139.1| - 1.3e-50 172.6 0.0 1.7e-50 172.2 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|292655242|ref|YP_003535139.1| - 1.1e-41 141.6 0.0 2e-41 140.7 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal AICARFT_IMPCHas PF01808.18 gi|292655243|ref|YP_003535140.1| - 1.2e-84 284.3 0.0 1.5e-84 283.9 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|292655243|ref|YP_003535140.1| - 4e-43 147.3 0.0 8.7e-43 146.2 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase PcrB PF01884.17 gi|292655244|ref|YP_003535141.1| - 1.5e-39 135.7 0.0 3.8e-39 134.5 0.0 1.6 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|292655244|ref|YP_003535141.1| - 0.00039 19.9 0.0 0.00065 19.2 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Usp PF00582.26 gi|292655245|ref|YP_003535142.1| - 2.6e-33 115.5 3.1 2.9e-33 115.3 3.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Pterin_bind PF00809.22 gi|292655246|ref|YP_003535143.1| - 2.7e-76 256.5 0.5 4.4e-76 255.8 0.5 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|292655246|ref|YP_003535143.1| - 4.7e-14 52.8 0.0 7.7e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|292655246|ref|YP_003535143.1| - 4.2e-10 39.7 0.0 2e-09 37.6 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain TANGO2 PF05742.12 gi|292655247|ref|YP_003535144.1| - 1.2e-24 87.8 0.0 5.3e-24 85.6 0.0 1.8 1 1 0 1 1 1 1 Transport and Golgi organisation 2 RseA_N PF03872.13 gi|292655247|ref|YP_003535144.1| - 0.13 12.8 0.3 11 6.6 0.0 2.4 2 0 0 2 2 2 0 Anti sigma-E protein RseA, N-terminal domain B-block_TFIIIC PF04182.12 gi|292655248|ref|YP_003535145.1| - 0.00071 19.7 0.0 0.00095 19.3 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|292655248|ref|YP_003535145.1| - 0.0011 18.8 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|292655248|ref|YP_003535145.1| - 0.0024 17.7 0.0 0.0035 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Proteasome PF00227.26 gi|292655249|ref|YP_003535146.1| - 9.1e-59 198.1 0.0 1.2e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|292655249|ref|YP_003535146.1| - 8.1e-14 51.0 0.1 1.5e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|292655250|ref|YP_003535147.1| - 2.5e-19 69.4 0.0 6.6e-19 68.1 0.0 1.6 2 0 0 2 2 2 1 Rpp14/Pop5 family Methyltransf_25 PF13649.6 gi|292655251|ref|YP_003535148.1| - 2.9e-18 66.4 0.4 6.3e-18 65.3 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655251|ref|YP_003535148.1| - 3.8e-16 59.2 0.0 5.7e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655251|ref|YP_003535148.1| - 3.4e-14 53.3 0.2 7.7e-14 52.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292655251|ref|YP_003535148.1| - 1.1e-11 45.3 0.1 2.2e-11 44.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292655251|ref|YP_003535148.1| - 9.7e-09 34.9 0.0 1.8e-08 34.0 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|292655251|ref|YP_003535148.1| - 3.6e-07 30.2 0.0 5.5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|292655251|ref|YP_003535148.1| - 5.3e-06 26.1 0.0 7.9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|292655251|ref|YP_003535148.1| - 3.4e-05 23.4 0.1 4.8e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|292655251|ref|YP_003535148.1| - 0.00084 19.4 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|292655251|ref|YP_003535148.1| - 0.0039 17.1 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|292655251|ref|YP_003535148.1| - 0.0053 15.9 0.0 0.008 15.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase tRNA_U5-meth_tr PF05958.11 gi|292655251|ref|YP_003535148.1| - 0.0069 15.4 0.0 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|292655251|ref|YP_003535148.1| - 0.018 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|292655251|ref|YP_003535148.1| - 0.018 14.1 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|292655251|ref|YP_003535148.1| - 0.032 13.9 0.1 0.12 12.1 0.1 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|292655251|ref|YP_003535148.1| - 0.034 13.5 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|292655251|ref|YP_003535148.1| - 0.06 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase NodS PF05401.11 gi|292655251|ref|YP_003535148.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) RNase_P_p30 PF01876.16 gi|292655252|ref|YP_003535149.1| - 2.2e-35 122.1 0.0 2.9e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PGF-CTERM PF18204.1 gi|292655253|ref|YP_003535150.1| - 0.052 13.5 8.5 0.052 13.5 8.5 2.0 2 1 1 3 3 3 0 PGF-CTERM motif Peptidase_M20 PF01546.28 gi|292655254|ref|YP_003535151.1| - 8.3e-22 77.9 1.5 1.1e-21 77.5 0.5 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292655254|ref|YP_003535151.1| - 4.8e-19 68.3 0.0 9.9e-19 67.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|292655254|ref|YP_003535151.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M28 DAP_epimerase PF01678.19 gi|292655255|ref|YP_003535152.1| - 6.2e-44 149.0 1.8 1.8e-22 79.8 0.3 2.3 2 1 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.16 gi|292655256|ref|YP_003535153.1| - 1.1e-42 146.2 0.0 1.3e-42 145.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|292655256|ref|YP_003535153.1| - 2.1e-24 85.6 0.0 2.1e-24 85.6 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EccE PF11203.8 gi|292655256|ref|YP_003535153.1| - 0.036 14.4 0.7 0.18 12.1 0.3 2.2 1 1 1 2 2 2 0 Putative type VII ESX secretion system translocon, EccE THDPS_N_2 PF14805.6 gi|292655257|ref|YP_003535154.1| - 2.5e-22 78.9 0.4 3.7e-22 78.3 0.4 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|292655257|ref|YP_003535154.1| - 2.5e-10 39.7 5.9 0.0011 18.6 1.6 3.4 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|292655257|ref|YP_003535154.1| - 6.8e-05 22.5 8.5 0.0025 17.5 0.8 3.4 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|292655258|ref|YP_003535155.1| - 7.8e-36 122.8 0.0 1.1e-35 122.2 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|292655258|ref|YP_003535155.1| - 8.1e-25 87.4 0.1 1.2e-24 86.7 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|292655258|ref|YP_003535155.1| - 0.00017 21.8 0.2 0.00049 20.4 0.2 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|292655258|ref|YP_003535155.1| - 0.00044 20.9 0.1 0.00086 20.0 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 gi|292655258|ref|YP_003535155.1| - 0.003 17.3 0.9 0.0046 16.7 0.9 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Semialdhyde_dh PF01118.24 gi|292655258|ref|YP_003535155.1| - 0.016 15.6 0.3 0.03 14.7 0.3 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|292655258|ref|YP_003535155.1| - 0.024 14.6 0.1 0.04 13.9 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase RmlD_sub_bind PF04321.17 gi|292655258|ref|YP_003535155.1| - 0.036 13.1 0.0 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.21 gi|292655258|ref|YP_003535155.1| - 0.066 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|292655258|ref|YP_003535155.1| - 0.066 14.0 0.1 0.11 13.3 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|292655258|ref|YP_003535155.1| - 0.14 12.6 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain DHDPS PF00701.22 gi|292655259|ref|YP_003535156.1| - 1.3e-92 309.6 0.0 1.5e-92 309.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.6 gi|292655259|ref|YP_003535156.1| - 0.00024 20.7 0.5 0.0013 18.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.14 gi|292655259|ref|YP_003535156.1| - 0.0074 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NYN PF01936.18 gi|292655260|ref|YP_003535157.1| - 1.6e-36 126.0 0.2 2e-36 125.7 0.2 1.0 1 0 0 1 1 1 1 NYN domain DUF2529 PF10740.9 gi|292655260|ref|YP_003535157.1| - 0.02 14.6 0.1 0.083 12.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) PIN7 PF18475.1 gi|292655260|ref|YP_003535157.1| - 0.051 14.2 0.0 0.071 13.8 0.0 1.3 1 0 0 1 1 1 0 PIN domain FMO-like PF00743.19 gi|292655260|ref|YP_003535157.1| - 0.056 11.9 0.0 0.073 11.5 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like TGT_C2 PF14810.6 gi|292655263|ref|YP_003535160.1| - 1.2e-25 89.4 0.2 2.2e-25 88.5 0.2 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|292655263|ref|YP_003535160.1| - 2.3e-14 53.1 0.2 4e-14 52.3 0.2 1.4 1 0 0 1 1 1 1 PUA domain TruB-C_2 PF09157.11 gi|292655263|ref|YP_003535160.1| - 0.083 12.9 0.6 15 5.7 0.1 3.0 1 1 1 3 3 3 0 Pseudouridine synthase II TruB, C-terminal DDE_Tnp_1 PF01609.21 gi|292655264|ref|YP_003535161.1| - 4.6e-27 95.1 0.0 6e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292655264|ref|YP_003535161.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Nterm_IS4 PF13006.7 gi|292655264|ref|YP_003535161.1| - 0.033 14.4 0.0 0.083 13.1 0.0 1.7 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal SPP PF06550.11 gi|292655265|ref|YP_003535162.1| - 9.2e-84 281.2 23.3 2.9e-83 279.6 23.3 1.6 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|292655265|ref|YP_003535162.1| - 7.4e-07 29.0 6.5 0.00012 21.7 5.1 2.7 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|292655265|ref|YP_003535162.1| - 0.07 11.9 13.8 8.2 5.1 12.3 3.1 2 1 0 2 2 2 0 Presenilin Astro_capsid_p PF12226.8 gi|292655265|ref|YP_003535162.1| - 0.71 9.0 3.8 0.96 8.5 3.8 1.1 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Gar1 PF04410.14 gi|292655266|ref|YP_003535163.1| - 6.3e-10 39.0 0.0 6.3e-10 39.0 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|292655267|ref|YP_003535164.1| - 2.1e-24 86.3 0.1 2.6e-24 86.0 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein THUMP PF02926.17 gi|292655267|ref|YP_003535164.1| - 0.072 13.2 0.0 0.081 13.0 0.0 1.1 1 0 0 1 1 1 0 THUMP domain Peripla_BP_2 PF01497.18 gi|292655268|ref|YP_003535165.1| - 9.3e-31 107.2 0.1 1.5e-30 106.6 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|292655268|ref|YP_003535165.1| - 0.00029 20.7 8.2 0.00029 20.7 8.2 2.2 2 0 0 2 2 2 1 PGF-CTERM motif Peripla_BP_4 PF13407.6 gi|292655268|ref|YP_003535165.1| - 0.015 14.9 1.9 0.027 14.1 0.1 2.2 2 1 0 2 2 2 0 Periplasmic binding protein domain Gram_pos_anchor PF00746.21 gi|292655268|ref|YP_003535165.1| - 0.07 13.1 0.2 0.07 13.1 0.2 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif FSA_C PF10479.9 gi|292655268|ref|YP_003535165.1| - 0.29 9.2 6.5 0.5 8.4 6.5 1.3 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus Mucin PF01456.17 gi|292655268|ref|YP_003535165.1| - 0.47 10.4 28.4 0.11 12.5 15.9 2.3 2 0 0 2 2 2 0 Mucin-like glycoprotein FecCD PF01032.18 gi|292655269|ref|YP_003535166.1| - 6.8e-89 298.0 33.4 2.5e-88 296.1 33.4 1.7 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|292655269|ref|YP_003535166.1| - 0.00017 21.2 22.5 0.00044 19.8 22.1 1.9 1 1 1 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|292655270|ref|YP_003535167.1| - 5.5e-30 104.7 0.0 8.7e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655270|ref|YP_003535167.1| - 4.7e-09 36.5 1.6 7.5e-05 22.7 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|292655270|ref|YP_003535167.1| - 2.4e-05 24.8 0.1 6e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|292655270|ref|YP_003535167.1| - 0.00013 22.5 0.0 0.00017 22.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292655270|ref|YP_003535167.1| - 0.00092 18.7 0.1 0.019 14.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|292655270|ref|YP_003535167.1| - 0.0024 17.6 0.1 0.0081 15.9 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292655270|ref|YP_003535167.1| - 0.0045 17.2 0.1 0.011 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292655270|ref|YP_003535167.1| - 0.0059 16.3 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|292655270|ref|YP_003535167.1| - 0.0076 15.5 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|292655270|ref|YP_003535167.1| - 0.013 15.8 0.2 0.046 14.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|292655270|ref|YP_003535167.1| - 0.022 14.5 0.0 0.049 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|292655270|ref|YP_003535167.1| - 0.025 14.5 0.1 0.38 10.7 0.0 2.2 2 0 0 2 2 2 0 NACHT domain MeaB PF03308.16 gi|292655270|ref|YP_003535167.1| - 0.037 13.0 0.3 0.074 12.0 0.3 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|292655270|ref|YP_003535167.1| - 0.04 14.2 2.6 0.082 13.2 0.2 2.6 2 2 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|292655270|ref|YP_003535167.1| - 0.059 13.3 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|292655270|ref|YP_003535167.1| - 0.064 12.3 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|292655270|ref|YP_003535167.1| - 0.077 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|292655270|ref|YP_003535167.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.9 gi|292655270|ref|YP_003535167.1| - 0.21 10.3 1.0 4 6.1 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Tubulin PF00091.25 gi|292655271|ref|YP_003535168.1| - 1.5e-25 90.6 0.0 3.6e-25 89.3 0.0 1.7 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|292655271|ref|YP_003535168.1| - 0.0088 15.3 0.9 0.016 14.4 0.0 1.8 2 0 0 2 2 2 1 Tubulin like PIN_5 PF08745.11 gi|292655272|ref|YP_003535169.1| - 1.1e-76 256.9 0.1 1.2e-76 256.7 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease CorA PF01544.18 gi|292655272|ref|YP_003535169.1| - 0.1 11.9 0.4 0.15 11.4 0.1 1.4 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein PIN_3 PF13470.6 gi|292655272|ref|YP_003535169.1| - 0.15 12.8 0.4 0.94 10.3 0.4 2.1 1 1 0 1 1 1 0 PIN domain HTH_20 PF12840.7 gi|292655274|ref|YP_003535171.1| - 1.3e-08 34.7 0.7 1.9e-08 34.2 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655274|ref|YP_003535171.1| - 1.1e-06 28.3 0.2 2.8e-06 27.0 0.1 1.8 1 1 1 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|292655274|ref|YP_003535171.1| - 0.00075 19.3 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292655274|ref|YP_003535171.1| - 0.0023 17.8 0.1 0.0029 17.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|292655274|ref|YP_003535171.1| - 0.0068 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|292655274|ref|YP_003535171.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PTR PF12789.7 gi|292655274|ref|YP_003535171.1| - 0.028 14.5 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 Phage tail repeat like FUR PF01475.19 gi|292655274|ref|YP_003535171.1| - 0.08 13.1 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_10 PF04967.12 gi|292655275|ref|YP_003535172.1| - 9.5e-22 76.6 0.0 1.4e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|292655275|ref|YP_003535172.1| - 0.014 15.0 0.1 1 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|292655275|ref|YP_003535172.1| - 0.017 14.6 0.1 0.056 13.0 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|292655275|ref|YP_003535172.1| - 0.056 13.2 0.2 0.27 11.1 0.2 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|292655275|ref|YP_003535172.1| - 0.097 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CpXC PF14353.6 gi|292655276|ref|YP_003535173.1| - 0.00085 19.3 0.2 0.00091 19.3 0.2 1.0 1 0 0 1 1 1 1 CpXC protein zinc_ribbon_4 PF13717.6 gi|292655276|ref|YP_003535173.1| - 0.0017 18.2 0.7 0.0023 17.8 0.7 1.3 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|292655276|ref|YP_003535173.1| - 0.0068 16.4 0.5 0.0083 16.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|292655276|ref|YP_003535173.1| - 0.02 15.0 0.8 0.025 14.7 0.8 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zf-HIT PF04438.16 gi|292655276|ref|YP_003535173.1| - 0.059 13.2 1.3 0.48 10.4 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.12 gi|292655276|ref|YP_003535173.1| - 0.064 12.8 3.6 0.11 12.0 3.6 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|292655276|ref|YP_003535173.1| - 0.15 12.2 3.2 0.31 11.2 3.2 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Copper-bind PF00127.20 gi|292655277|ref|YP_003535174.1| - 3.1e-16 59.6 0.3 9.2e-16 58.1 0.3 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|292655277|ref|YP_003535174.1| - 6.8e-05 22.5 2.2 6.8e-05 22.5 2.2 2.5 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|292655277|ref|YP_003535174.1| - 0.00075 19.6 0.0 0.00096 19.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.20 gi|292655277|ref|YP_003535174.1| - 0.0015 18.3 1.4 0.0031 17.3 1.4 1.6 1 0 0 1 1 1 1 PKD domain PaaB PF06243.11 gi|292655278|ref|YP_003535175.1| - 4.1e-09 36.5 0.0 5.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|292655279|ref|YP_003535176.1| - 7.5e-25 88.2 0.1 2.3e-23 83.4 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|292655279|ref|YP_003535176.1| - 1.4e-12 48.1 0.0 4.1e-12 46.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|292655279|ref|YP_003535176.1| - 9.6e-08 32.2 0.0 3.5e-07 30.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|292655279|ref|YP_003535176.1| - 2.8e-05 24.5 0.4 7.5e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain DUF2583 PF10762.9 gi|292655280|ref|YP_003535177.1| - 0.21 12.1 1.8 0.43 11.0 1.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2583) Pyr_redox_2 PF07992.14 gi|292655281|ref|YP_003535178.1| - 2.2e-42 145.3 0.1 2.6e-42 145.1 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292655281|ref|YP_003535178.1| - 1.4e-17 64.0 0.2 1.9e-15 57.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292655281|ref|YP_003535178.1| - 1.5e-17 63.8 0.0 2.3e-15 56.7 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292655281|ref|YP_003535178.1| - 1.2e-05 25.0 1.1 0.035 13.7 0.0 3.2 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292655281|ref|YP_003535178.1| - 0.00084 18.1 0.1 3 6.5 0.0 3.5 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|292655281|ref|YP_003535178.1| - 0.001 18.3 5.0 0.058 12.5 0.0 3.0 2 1 1 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|292655281|ref|YP_003535178.1| - 0.0012 19.1 0.0 0.0039 17.4 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|292655281|ref|YP_003535178.1| - 0.0084 15.2 0.1 32 3.5 0.0 3.8 4 0 0 4 4 4 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|292655281|ref|YP_003535178.1| - 0.012 16.0 0.0 0.06 13.8 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|292655281|ref|YP_003535178.1| - 0.078 11.8 0.0 3.6 6.3 0.0 2.7 3 0 0 3 3 3 0 Tryptophan halogenase HicB_lk_antitox PF15919.5 gi|292655281|ref|YP_003535178.1| - 0.083 13.0 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system FMO-like PF00743.19 gi|292655281|ref|YP_003535178.1| - 0.23 9.8 0.0 4.8 5.5 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like DUF357 PF04010.13 gi|292655282|ref|YP_003535179.1| - 1.1e-29 102.3 1.0 1.3e-29 102.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) tRNA-synt_1e PF01406.19 gi|292655283|ref|YP_003535180.1| - 3.9e-105 351.5 0.1 2.3e-104 349.0 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|292655283|ref|YP_003535180.1| - 1.2e-12 48.1 0.4 2.8e-12 46.9 0.4 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.11 gi|292655283|ref|YP_003535180.1| - 1.4e-08 33.9 0.3 0.00028 19.8 0.0 2.3 2 1 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|292655283|ref|YP_003535180.1| - 2.3e-08 33.4 0.1 0.00018 20.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|292655283|ref|YP_003535180.1| - 3.4e-05 22.3 0.1 0.00015 20.1 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) FTO_CTD PF12934.7 gi|292655283|ref|YP_003535180.1| - 0.0017 18.2 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 FTO C-terminal domain AP_endonuc_2 PF01261.24 gi|292655283|ref|YP_003535180.1| - 0.023 14.2 1.7 0.48 9.8 0.2 2.4 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel UVR PF02151.19 gi|292655283|ref|YP_003535180.1| - 0.39 10.5 0.1 0.39 10.5 0.1 2.8 3 0 0 3 3 3 0 UvrB/uvrC motif Usp PF00582.26 gi|292655283|ref|YP_003535180.1| - 4.6 7.7 6.8 0.85 10.1 0.4 2.7 3 0 0 3 3 3 0 Universal stress protein family MCPsignal PF00015.21 gi|292655284|ref|YP_003535181.1| - 3.2e-46 157.3 40.7 1.5e-43 148.5 20.6 3.5 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|292655284|ref|YP_003535181.1| - 1.2e-19 70.8 0.0 1.3e-18 67.4 0.0 2.6 3 0 0 3 3 3 1 Protoglobin DUF948 PF06103.11 gi|292655284|ref|YP_003535181.1| - 4.4e-07 30.1 23.2 0.0074 16.5 2.0 4.6 3 1 1 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|292655284|ref|YP_003535181.1| - 0.0002 21.4 18.6 0.21 11.6 0.9 4.1 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) COG5 PF10392.9 gi|292655284|ref|YP_003535181.1| - 0.00056 20.1 6.4 0.55 10.4 0.1 3.7 3 1 1 4 4 3 1 Golgi transport complex subunit 5 IFT57 PF10498.9 gi|292655284|ref|YP_003535181.1| - 0.0012 17.9 13.5 0.11 11.5 0.8 3.1 2 1 1 3 3 3 2 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|292655284|ref|YP_003535181.1| - 0.0012 19.0 7.3 0.0073 16.5 0.8 3.1 2 2 1 3 3 3 1 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|292655284|ref|YP_003535181.1| - 0.0023 18.2 19.7 0.21 11.9 0.6 4.7 2 2 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|292655284|ref|YP_003535181.1| - 0.014 14.3 15.8 0.037 12.9 5.2 2.5 2 1 0 2 2 2 0 Spc7 kinetochore protein AIP3 PF03915.13 gi|292655284|ref|YP_003535181.1| - 0.016 14.3 14.9 0.3 10.1 3.4 2.2 1 1 1 2 2 2 0 Actin interacting protein 3 DUF4795 PF16043.5 gi|292655284|ref|YP_003535181.1| - 0.017 14.7 13.3 0.15 11.6 6.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Baculo_PEP_C PF04513.12 gi|292655284|ref|YP_003535181.1| - 0.021 14.9 17.6 0.23 11.5 1.9 3.8 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.11 gi|292655284|ref|YP_003535181.1| - 0.028 14.5 18.6 0.86 9.7 2.9 3.6 2 2 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Laminin_II PF06009.12 gi|292655284|ref|YP_003535181.1| - 0.03 14.3 27.7 0.28 11.2 1.6 4.9 2 2 2 5 5 5 0 Laminin Domain II FlgN PF05130.12 gi|292655284|ref|YP_003535181.1| - 0.03 14.8 0.4 0.03 14.8 0.4 3.5 1 1 2 3 3 3 0 FlgN protein FH2 PF02181.23 gi|292655284|ref|YP_003535181.1| - 0.037 13.1 2.3 0.073 12.2 0.6 2.3 1 1 0 2 2 2 0 Formin Homology 2 Domain Mod_r PF07200.13 gi|292655284|ref|YP_003535181.1| - 0.056 13.6 8.7 0.67 10.0 0.1 3.5 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Muted PF14942.6 gi|292655284|ref|YP_003535181.1| - 0.12 12.8 7.8 1.5 9.2 2.2 2.9 2 1 0 2 2 2 0 Organelle biogenesis, Muted-like protein MAD PF05557.13 gi|292655284|ref|YP_003535181.1| - 0.12 10.7 12.2 0.023 13.1 2.7 2.1 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF489 PF04356.12 gi|292655284|ref|YP_003535181.1| - 0.12 12.3 2.0 0.77 9.7 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF489) NPV_P10 PF05531.12 gi|292655284|ref|YP_003535181.1| - 0.22 12.0 21.8 4.1 7.9 2.7 5.0 3 1 2 5 5 5 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|292655284|ref|YP_003535181.1| - 0.33 9.1 15.8 0.037 12.2 4.7 2.7 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA Fez1 PF06818.15 gi|292655284|ref|YP_003535181.1| - 0.34 11.3 10.6 3 8.3 2.0 2.3 2 0 0 2 2 2 0 Fez1 APG17 PF04108.12 gi|292655284|ref|YP_003535181.1| - 0.35 9.9 17.7 29 3.6 17.3 2.9 1 1 0 1 1 1 0 Autophagy protein Apg17 TMPIT PF07851.13 gi|292655284|ref|YP_003535181.1| - 0.44 9.7 6.9 12 5.0 0.1 3.1 2 1 1 3 3 3 0 TMPIT-like protein Sec34 PF04136.15 gi|292655284|ref|YP_003535181.1| - 0.45 10.4 6.3 7.5 6.4 0.1 3.8 2 2 1 3 3 3 0 Sec34-like family CREPT PF16566.5 gi|292655284|ref|YP_003535181.1| - 0.46 10.6 3.7 2.4 8.3 0.1 3.0 2 1 1 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour DUF4200 PF13863.6 gi|292655284|ref|YP_003535181.1| - 0.52 10.7 5.4 6.5 7.2 0.5 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) GAT PF03127.14 gi|292655284|ref|YP_003535181.1| - 0.59 10.5 2.7 1.6 9.1 0.0 2.9 3 0 0 3 3 2 0 GAT domain TEX13 PF15186.6 gi|292655284|ref|YP_003535181.1| - 0.71 9.5 10.5 1.1 8.9 0.9 3.0 2 1 1 3 3 3 0 Testis-expressed sequence 13 protein family HMMR_N PF15905.5 gi|292655284|ref|YP_003535181.1| - 0.88 9.0 11.5 5.6 6.3 4.5 2.5 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Dynactin_p22 PF07426.11 gi|292655284|ref|YP_003535181.1| - 1 9.2 6.2 14 5.5 2.4 3.3 1 1 1 2 2 2 0 Dynactin subunit p22 AAA_13 PF13166.6 gi|292655284|ref|YP_003535181.1| - 1 7.9 16.8 9.1 4.8 16.2 2.0 1 1 0 1 1 1 0 AAA domain DASH_Dad2 PF08654.10 gi|292655284|ref|YP_003535181.1| - 1.1 9.7 11.5 2.2 8.8 2.0 4.0 2 2 1 3 3 3 0 DASH complex subunit Dad2 ZapB PF06005.12 gi|292655284|ref|YP_003535181.1| - 1.2 9.6 8.0 7.1 7.2 0.3 4.1 2 1 1 3 3 3 0 Cell division protein ZapB Laminin_I PF06008.14 gi|292655284|ref|YP_003535181.1| - 1.4 8.5 17.1 0.68 9.6 9.1 2.4 1 1 1 2 2 2 0 Laminin Domain I NYD-SP28 PF14772.6 gi|292655284|ref|YP_003535181.1| - 1.7 8.7 10.2 1.1 9.4 0.1 2.9 3 0 0 3 3 2 0 Sperm tail RmuC PF02646.16 gi|292655284|ref|YP_003535181.1| - 1.9 7.6 10.6 1.9 7.5 0.2 3.6 1 1 2 4 4 4 0 RmuC family Spidroin_MaSp PF11260.8 gi|292655284|ref|YP_003535181.1| - 2.5 8.4 5.7 1.1 9.5 0.1 3.2 3 1 1 4 4 2 0 Major ampullate spidroin 1 and 2 Spectrin PF00435.21 gi|292655284|ref|YP_003535181.1| - 2.6 8.6 10.7 16 6.0 0.8 3.7 2 2 0 3 3 2 0 Spectrin repeat Syntaxin-6_N PF09177.11 gi|292655284|ref|YP_003535181.1| - 2.8 8.6 23.7 0.22 12.1 0.7 4.3 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Goodbye PF17109.5 gi|292655284|ref|YP_003535181.1| - 3.7 8.0 4.9 3.2 8.2 0.5 3.1 2 2 1 3 3 2 0 fungal STAND N-terminal Goodbye domain DUF5082 PF16888.5 gi|292655284|ref|YP_003535181.1| - 4.2 7.7 14.8 16 5.8 0.7 3.5 2 2 0 2 2 2 0 Domain of unknown function (DUF5082) YkyA PF10368.9 gi|292655284|ref|YP_003535181.1| - 4.2 7.0 22.2 0.41 10.3 3.0 3.5 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF16 PF01519.16 gi|292655284|ref|YP_003535181.1| - 4.6 7.8 11.7 6.6 7.3 0.5 3.6 2 2 2 4 4 4 0 Protein of unknown function DUF16 COG2 PF06148.11 gi|292655284|ref|YP_003535181.1| - 5.2 7.2 16.1 7.6 6.6 0.6 4.9 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.12 gi|292655284|ref|YP_003535181.1| - 5.3 7.7 9.5 19 5.9 0.5 3.9 2 1 0 3 3 3 0 SlyX Seryl_tRNA_N PF02403.22 gi|292655284|ref|YP_003535181.1| - 6.1 7.1 19.4 3.9 7.7 2.0 4.3 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.19 gi|292655284|ref|YP_003535181.1| - 7.1 4.4 9.5 9.3 4.0 0.6 2.4 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family LXG PF04740.12 gi|292655284|ref|YP_003535181.1| - 7.1 6.3 20.4 1.5 8.5 0.8 3.4 2 1 1 3 3 3 0 LXG domain of WXG superfamily HisKA PF00512.25 gi|292655284|ref|YP_003535181.1| - 7.2 6.7 8.9 16 5.6 0.0 4.8 2 1 2 4 4 4 0 His Kinase A (phospho-acceptor) domain Mce4_CUP1 PF11887.8 gi|292655284|ref|YP_003535181.1| - 7.6 5.9 13.4 6 6.2 4.3 2.8 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative dCache_1 PF02743.18 gi|292655284|ref|YP_003535181.1| - 9.2 6.0 8.7 0.39 10.5 0.5 2.7 2 2 1 3 3 3 0 Cache domain Sec20 PF03908.13 gi|292655284|ref|YP_003535181.1| - 9.4 6.2 6.4 16 5.5 0.2 3.3 3 0 0 3 3 3 0 Sec20 T3SchapCesA PF11439.8 gi|292655284|ref|YP_003535181.1| - 9.4 6.4 7.5 17 5.7 0.3 3.5 1 1 3 4 4 4 0 Type III secretion system filament chaperone CesA Rsd_AlgQ PF04353.13 gi|292655284|ref|YP_003535181.1| - 9.7 6.1 10.6 7 6.6 0.2 4.0 2 1 2 4 4 4 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CbiX PF01903.17 gi|292655286|ref|YP_003535183.1| - 5.9e-44 148.8 0.2 5.7e-22 78.1 0.0 2.4 2 1 0 2 2 2 2 CbiX CbiK PF06180.11 gi|292655286|ref|YP_003535183.1| - 9.2e-09 35.0 0.0 0.0013 18.1 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) LTV PF04180.14 gi|292655286|ref|YP_003535183.1| - 0.031 14.0 0.1 5.8 6.5 0.1 2.1 2 0 0 2 2 2 0 Low temperature viability protein DR2241 PF18069.1 gi|292655287|ref|YP_003535184.1| - 2.1e-44 149.9 0.5 5.3e-44 148.6 0.5 1.7 1 0 0 1 1 1 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|292655287|ref|YP_003535184.1| - 1.3e-27 96.0 0.7 2.6e-27 95.1 0.7 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|292655289|ref|YP_003535186.1| - 0.00015 22.3 0.1 0.00038 21.0 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.21 gi|292655290|ref|YP_003535187.1| - 1.8e-154 514.7 0.0 2e-154 514.5 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.10 gi|292655291|ref|YP_003535188.1| - 0.0029 17.5 0.1 0.0059 16.5 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Pup PF05639.11 gi|292655291|ref|YP_003535188.1| - 0.019 15.9 0.3 0.032 15.2 0.3 1.4 1 0 0 1 1 1 0 Pup-like protein HTH_5 PF01022.20 gi|292655291|ref|YP_003535188.1| - 0.028 14.3 0.1 0.059 13.2 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|292655291|ref|YP_003535188.1| - 0.052 13.5 0.0 0.097 12.6 0.0 1.6 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|292655291|ref|YP_003535188.1| - 0.055 13.3 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CLZ PF16526.5 gi|292655291|ref|YP_003535188.1| - 0.24 11.8 5.1 2.6 8.5 0.7 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Filament PF00038.21 gi|292655292|ref|YP_003535189.1| - 7.8e-06 25.7 4.3 1.1e-05 25.2 4.3 1.2 1 0 0 1 1 1 1 Intermediate filament protein Cep57_CLD_2 PF14197.6 gi|292655292|ref|YP_003535189.1| - 5.4e-05 23.2 13.5 0.0001 22.3 13.5 1.4 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.9 gi|292655292|ref|YP_003535189.1| - 0.00023 21.2 5.8 0.00039 20.4 5.8 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|292655292|ref|YP_003535189.1| - 0.0029 17.0 2.3 0.0048 16.2 2.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|292655292|ref|YP_003535189.1| - 0.0096 14.8 4.7 0.014 14.2 4.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein HAUS-augmin3 PF14932.6 gi|292655292|ref|YP_003535189.1| - 0.011 15.3 3.1 0.018 14.6 3.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 KASH_CCD PF14662.6 gi|292655292|ref|YP_003535189.1| - 0.016 15.0 2.3 0.027 14.3 2.3 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Tropomyosin_1 PF12718.7 gi|292655292|ref|YP_003535189.1| - 0.021 15.0 9.9 0.035 14.3 9.9 1.3 1 0 0 1 1 1 0 Tropomyosin like DUF1192 PF06698.11 gi|292655292|ref|YP_003535189.1| - 0.03 14.4 1.3 0.03 14.4 1.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) DUF848 PF05852.11 gi|292655292|ref|YP_003535189.1| - 0.049 13.7 3.2 0.094 12.8 3.2 1.4 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) bZIP_1 PF00170.21 gi|292655292|ref|YP_003535189.1| - 0.051 13.7 8.7 1.7 8.8 1.1 2.4 1 1 1 2 2 2 0 bZIP transcription factor THOC7 PF05615.13 gi|292655292|ref|YP_003535189.1| - 0.074 13.3 5.9 0.14 12.4 5.9 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 Atg14 PF10186.9 gi|292655292|ref|YP_003535189.1| - 0.093 11.8 3.4 0.13 11.3 3.4 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Nup88 PF10168.9 gi|292655292|ref|YP_003535189.1| - 0.098 10.5 2.7 0.14 10.0 2.7 1.1 1 0 0 1 1 1 0 Nuclear pore component HOOK PF05622.12 gi|292655292|ref|YP_003535189.1| - 0.12 10.5 11.5 0.073 11.2 5.7 2.0 1 1 1 2 2 2 0 HOOK protein bZIP_2 PF07716.15 gi|292655292|ref|YP_003535189.1| - 0.13 12.4 11.0 0.089 12.9 2.2 2.4 1 1 1 2 2 2 0 Basic region leucine zipper HALZ PF02183.18 gi|292655292|ref|YP_003535189.1| - 0.15 12.3 7.4 0.1 12.9 3.0 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper APG6_N PF17675.1 gi|292655292|ref|YP_003535189.1| - 0.15 12.6 9.9 0.3 11.6 9.9 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region IFT20 PF14931.6 gi|292655292|ref|YP_003535189.1| - 0.21 11.8 3.5 0.45 10.7 3.5 1.5 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 Rootletin PF15035.6 gi|292655292|ref|YP_003535189.1| - 0.21 11.6 11.5 0.36 10.8 11.5 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion EMP24_GP25L PF01105.24 gi|292655292|ref|YP_003535189.1| - 0.28 11.1 0.8 0.54 10.2 0.8 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TMF_TATA_bd PF12325.8 gi|292655292|ref|YP_003535189.1| - 0.35 11.1 6.5 0.74 10.0 6.5 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding YabA PF06156.13 gi|292655292|ref|YP_003535189.1| - 0.71 10.5 5.0 5.3 7.7 3.8 2.7 2 1 1 3 3 3 0 Initiation control protein YabA AAA_13 PF13166.6 gi|292655292|ref|YP_003535189.1| - 0.94 8.0 2.5 1.4 7.5 2.5 1.1 1 0 0 1 1 1 0 AAA domain Bap31_Bap29_C PF18035.1 gi|292655292|ref|YP_003535189.1| - 1 9.4 3.7 1.2 9.2 2.3 1.8 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain MscS_porin PF12795.7 gi|292655292|ref|YP_003535189.1| - 1.2 8.7 16.0 1.8 8.1 16.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Macoilin PF09726.9 gi|292655292|ref|YP_003535189.1| - 1.2 7.6 3.8 1.7 7.1 3.8 1.1 1 0 0 1 1 1 0 Macoilin family DivIC PF04977.15 gi|292655292|ref|YP_003535189.1| - 1.6 8.6 8.8 4 7.3 1.9 2.4 1 1 1 2 2 2 0 Septum formation initiator XhlA PF10779.9 gi|292655292|ref|YP_003535189.1| - 1.7 8.9 3.3 3.1 8.1 3.3 1.4 1 0 0 1 1 1 0 Haemolysin XhlA Golgin_A5 PF09787.9 gi|292655292|ref|YP_003535189.1| - 1.9 7.9 7.8 3 7.2 7.8 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 JIP_LZII PF16471.5 gi|292655292|ref|YP_003535189.1| - 2 8.6 8.8 6.2 7.1 8.3 2.0 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II DUF3584 PF12128.8 gi|292655292|ref|YP_003535189.1| - 2.1 5.8 11.4 2.8 5.4 11.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Fez1 PF06818.15 gi|292655292|ref|YP_003535189.1| - 2.1 8.8 10.2 3.5 8.0 10.2 1.4 1 0 0 1 1 1 0 Fez1 UPF0242 PF06785.11 gi|292655292|ref|YP_003535189.1| - 2.8 8.0 5.6 4.4 7.4 5.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 gi|292655292|ref|YP_003535189.1| - 3.1 7.1 5.9 8.2 5.7 5.9 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ZapB PF06005.12 gi|292655292|ref|YP_003535189.1| - 3.5 8.1 12.2 3.2 8.3 8.1 2.2 1 1 1 2 2 2 0 Cell division protein ZapB Troponin PF00992.20 gi|292655292|ref|YP_003535189.1| - 3.6 7.9 8.4 8 6.8 8.4 1.5 1 1 0 1 1 1 0 Troponin Prefoldin_2 PF01920.20 gi|292655292|ref|YP_003535189.1| - 6 6.9 6.9 18 5.3 0.5 2.3 1 1 1 2 2 2 0 Prefoldin subunit Csm1_N PF18504.1 gi|292655292|ref|YP_003535189.1| - 6.5 7.2 7.6 7.1 7.1 2.9 2.4 1 1 1 2 2 2 0 Csm1 N-terminal domain Methyltransf_12 PF08242.12 gi|292655293|ref|YP_003535190.1| - 0.0001 23.0 0.0 0.00021 22.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_28 PF02636.17 gi|292655293|ref|YP_003535190.1| - 0.00051 19.8 0.0 0.00066 19.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|292655293|ref|YP_003535190.1| - 0.0016 19.1 0.2 0.033 14.9 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655293|ref|YP_003535190.1| - 0.0023 17.8 0.0 0.0065 16.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655293|ref|YP_003535190.1| - 0.025 15.2 0.2 0.08 13.6 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655293|ref|YP_003535190.1| - 0.22 11.3 0.0 3.5 7.4 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain CDP-OH_P_transf PF01066.21 gi|292655294|ref|YP_003535191.1| - 6e-08 33.3 0.8 6e-08 33.3 0.8 2.5 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase TrkA_N PF02254.18 gi|292655295|ref|YP_003535192.1| - 6.7e-42 142.4 8.5 2.1e-21 76.3 0.5 3.3 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|292655295|ref|YP_003535192.1| - 8.9e-22 76.7 0.6 2e-09 37.1 0.1 2.9 2 0 0 2 2 2 2 TrkA-C domain ThiF PF00899.21 gi|292655295|ref|YP_003535192.1| - 0.00052 19.5 0.2 0.0027 17.1 0.0 2.1 2 0 0 2 2 2 1 ThiF family FAD_binding_3 PF01494.19 gi|292655295|ref|YP_003535192.1| - 0.00071 18.9 0.2 0.0012 18.2 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 gi|292655295|ref|YP_003535192.1| - 0.0015 19.0 1.3 0.079 13.4 0.2 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding Ion_trans_2 PF07885.16 gi|292655295|ref|YP_003535192.1| - 0.0056 16.6 4.4 0.013 15.4 4.4 1.6 1 0 0 1 1 1 1 Ion channel 2-Hacid_dh_C PF02826.19 gi|292655295|ref|YP_003535192.1| - 0.017 14.5 0.1 0.044 13.1 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.13 gi|292655295|ref|YP_003535192.1| - 0.13 11.8 2.0 0.18 11.3 0.3 2.0 2 1 0 2 2 2 0 NmrA-like family ELFV_dehydrog PF00208.21 gi|292655295|ref|YP_003535192.1| - 0.37 10.5 1.8 0.75 9.5 0.1 2.1 2 1 1 3 3 3 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Toprim_3 PF13362.6 gi|292655295|ref|YP_003535192.1| - 0.69 10.3 9.2 1.9 8.9 2.9 3.8 2 2 2 4 4 4 0 Toprim domain COX3 PF00510.18 gi|292655296|ref|YP_003535193.1| - 4.8e-39 134.8 19.0 7.2e-39 134.2 19.0 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III DHHC PF01529.20 gi|292655296|ref|YP_003535193.1| - 0.24 11.5 8.5 0.26 11.4 3.5 2.7 2 1 0 2 2 2 0 DHHC palmitoyltransferase TraL PF07178.11 gi|292655296|ref|YP_003535193.1| - 1.1 9.8 7.5 3 8.4 0.5 3.0 3 0 0 3 3 3 0 TraL protein Peptidase_U4 PF03419.13 gi|292655296|ref|YP_003535193.1| - 6.1 6.0 10.4 2 7.6 2.2 2.1 1 1 1 2 2 2 0 Sporulation factor SpoIIGA SQS_PSY PF00494.19 gi|292655297|ref|YP_003535194.1| - 2.1e-51 174.9 0.9 2.8e-51 174.5 0.9 1.2 1 0 0 1 1 1 1 Squalene/phytoene synthase Acyl-CoA_dh_1 PF00441.24 gi|292655298|ref|YP_003535195.1| - 4.1e-47 160.1 1.0 6.4e-47 159.5 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|292655298|ref|YP_003535195.1| - 2.5e-36 124.8 0.8 8.1e-36 123.1 0.2 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|292655298|ref|YP_003535195.1| - 4.2e-25 87.8 0.0 7.8e-25 86.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|292655298|ref|YP_003535195.1| - 1.2e-23 83.9 1.4 1.8e-23 83.3 1.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PadR PF03551.14 gi|292655299|ref|YP_003535196.1| - 0.0011 18.8 0.2 0.0018 18.2 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|292655299|ref|YP_003535196.1| - 0.021 14.8 0.2 0.033 14.2 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.6 gi|292655299|ref|YP_003535196.1| - 0.078 12.7 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) CDP-OH_P_transf PF01066.21 gi|292655301|ref|YP_003535198.1| - 9.5e-10 39.1 1.9 9.5e-10 39.1 1.9 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.20 gi|292655302|ref|YP_003535199.1| - 4.7e-18 65.4 0.0 9.1e-18 64.5 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|292655302|ref|YP_003535199.1| - 3.7e-05 23.8 0.0 0.087 12.9 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|292655302|ref|YP_003535199.1| - 0.0035 17.1 8.5 0.01 15.7 8.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655302|ref|YP_003535199.1| - 0.011 15.1 2.7 0.011 15.1 2.7 1.7 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cu-oxidase_3 PF07732.15 gi|292655302|ref|YP_003535199.1| - 0.11 12.5 0.2 0.57 10.2 0.2 2.1 1 1 0 1 1 1 0 Multicopper oxidase Ribosomal_S3Ae PF01015.18 gi|292655303|ref|YP_003535200.1| - 1.3e-54 184.8 0.1 1.7e-54 184.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ProQ_C PF17516.2 gi|292655303|ref|YP_003535200.1| - 0.0039 16.6 0.0 0.0039 16.6 0.0 1.7 2 0 0 2 2 2 1 ProQ C-terminal domain Pcc1 PF09341.10 gi|292655304|ref|YP_003535201.1| - 0.0069 16.5 0.1 0.0094 16.1 0.1 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribul_P_3_epim PF00834.19 gi|292655304|ref|YP_003535201.1| - 0.045 13.1 0.2 0.051 13.0 0.2 1.1 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family HTH_Tnp_1 PF01527.20 gi|292655305|ref|YP_003535202.1| - 0.11 12.8 0.1 0.66 10.3 0.0 2.3 2 0 0 2 2 2 0 Transposase Ribosomal_S13_N PF08069.12 gi|292655306|ref|YP_003535203.1| - 1.7e-22 79.2 0.1 2.6e-22 78.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|292655306|ref|YP_003535203.1| - 8.6e-15 54.7 0.5 1.5e-14 54.0 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Y1_Tnp PF01797.16 gi|292655307|ref|YP_003535204.1| - 6e-38 129.7 0.0 6.7e-38 129.5 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like IQ_SEC7_PH PF16453.5 gi|292655307|ref|YP_003535204.1| - 0.02 14.9 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 PH domain DUF4974 PF16344.5 gi|292655307|ref|YP_003535204.1| - 0.042 13.9 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) Pilin_N PF07790.11 gi|292655310|ref|YP_003535207.1| - 0.00052 20.9 0.6 0.0033 18.3 0.2 2.0 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Big_7 PF17957.1 gi|292655311|ref|YP_003535208.1| - 2.8 8.8 8.0 26 5.7 0.4 3.3 1 1 2 3 3 3 0 Bacterial Ig domain T2SSF PF00482.23 gi|292655314|ref|YP_003535211.1| - 1.2e-27 96.3 10.2 2.9e-14 53.1 0.9 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|292655315|ref|YP_003535212.1| - 6e-42 143.6 0.0 9.4e-42 142.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|292655315|ref|YP_003535212.1| - 0.01 15.6 0.1 0.023 14.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain HAMP PF00672.25 gi|292655315|ref|YP_003535212.1| - 0.063 13.7 0.3 0.24 11.8 0.3 2.1 1 0 0 1 1 1 0 HAMP domain MttA_Hcf106 PF02416.16 gi|292655316|ref|YP_003535213.1| - 1.6e-14 52.9 0.0 2e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.21 gi|292655317|ref|YP_003535214.1| - 6.1e-33 113.4 0.0 7.2e-33 113.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|292655317|ref|YP_003535214.1| - 1.2e-24 86.7 0.1 1.5e-24 86.4 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|292655317|ref|YP_003535214.1| - 0.00022 21.3 0.0 0.0075 16.4 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|292655317|ref|YP_003535214.1| - 0.025 14.1 0.0 0.032 13.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF3103 PF11301.8 gi|292655317|ref|YP_003535214.1| - 0.15 10.9 0.1 0.21 10.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) HD PF01966.22 gi|292655318|ref|YP_003535215.1| - 3.1e-10 40.3 3.7 5.1e-10 39.6 3.7 1.4 1 0 0 1 1 1 1 HD domain MS_channel PF00924.18 gi|292655319|ref|YP_003535216.1| - 2.9e-50 170.7 0.7 2.9e-50 170.7 0.7 2.0 2 1 0 2 2 2 1 Mechanosensitive ion channel NSP10 PF09401.10 gi|292655319|ref|YP_003535216.1| - 0.062 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA synthesis protein NSP10 CRS1_YhbY PF01985.21 gi|292655320|ref|YP_003535217.1| - 7.7e-12 45.2 0.1 8.3e-12 45.1 0.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|292655321|ref|YP_003535218.1| - 4.7e-11 42.8 0.0 5.7e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Glyco_transf_4 PF13439.6 gi|292655322|ref|YP_003535219.1| - 2.4e-17 63.5 0.0 4e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|292655322|ref|YP_003535219.1| - 4.4e-17 62.1 0.0 1.1e-15 57.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|292655322|ref|YP_003535219.1| - 3e-15 56.8 0.0 4.6e-13 49.8 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|292655322|ref|YP_003535219.1| - 4.5e-12 46.2 0.1 1.2e-11 44.8 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|292655322|ref|YP_003535219.1| - 1.5e-11 45.0 2.4 2.3e-11 44.4 1.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|292655323|ref|YP_003535220.1| - 5.1e-30 104.3 0.0 1e-29 103.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292655323|ref|YP_003535220.1| - 4.9e-29 101.5 1.0 8.9e-29 100.7 1.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|292655323|ref|YP_003535220.1| - 2.8e-22 79.6 0.0 2.1e-21 76.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|292655323|ref|YP_003535220.1| - 1.2e-19 71.4 9.7 8.8e-19 68.5 3.6 2.3 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|292655323|ref|YP_003535220.1| - 3.6e-05 24.1 0.1 0.00013 22.3 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|292655323|ref|YP_003535220.1| - 0.00079 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF4510 PF14971.6 gi|292655324|ref|YP_003535221.1| - 0.031 14.6 0.3 0.031 14.6 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) betaPIX_CC PF16523.5 gi|292655324|ref|YP_003535221.1| - 0.17 11.7 0.0 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 betaPIX coiled coil NEMO PF11577.8 gi|292655324|ref|YP_003535221.1| - 0.5 10.4 11.2 8.4 6.5 7.2 2.1 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO DUF4140 PF13600.6 gi|292655324|ref|YP_003535221.1| - 1.1 9.8 5.5 1.5 9.3 0.3 2.0 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2797 PF10977.8 gi|292655325|ref|YP_003535222.1| - 1.7e-30 106.6 7.2 5.1e-25 88.7 3.2 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF2797) Epimerase PF01370.21 gi|292655326|ref|YP_003535223.1| - 1.4e-50 172.0 0.0 1.7e-50 171.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292655326|ref|YP_003535223.1| - 3.7e-37 128.5 0.1 1.1e-36 127.0 0.1 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|292655326|ref|YP_003535223.1| - 1.3e-19 70.5 0.0 1.6e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|292655326|ref|YP_003535223.1| - 1.6e-12 47.7 0.0 3.2e-12 46.7 0.0 1.5 2 0 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|292655326|ref|YP_003535223.1| - 1.3e-11 44.2 0.0 2e-10 40.3 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|292655326|ref|YP_003535223.1| - 1.8e-11 43.6 0.0 3.2e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|292655326|ref|YP_003535223.1| - 7.9e-07 28.5 0.0 4e-05 22.9 0.0 2.8 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|292655326|ref|YP_003535223.1| - 2.9e-05 23.6 0.1 0.00075 19.0 0.1 2.6 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|292655326|ref|YP_003535223.1| - 3.7e-05 24.0 0.1 8.5e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|292655326|ref|YP_003535223.1| - 7.9e-05 22.3 0.0 0.0023 17.5 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.23 gi|292655326|ref|YP_003535223.1| - 0.00047 20.3 0.0 0.00073 19.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|292655326|ref|YP_003535223.1| - 0.02 15.2 0.0 0.036 14.3 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short_C2 PF13561.6 gi|292655326|ref|YP_003535223.1| - 0.039 13.5 0.1 0.086 12.4 0.1 1.6 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|292655326|ref|YP_003535223.1| - 0.22 11.4 1.4 2.3 8.1 1.4 2.3 1 1 0 1 1 1 0 KR domain Spore_YhcN_YlaJ PF09580.10 gi|292655326|ref|YP_003535223.1| - 0.3 11.2 1.7 0.77 9.8 1.7 1.8 1 1 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Trm56 PF01994.16 gi|292655327|ref|YP_003535224.1| - 4.3e-48 162.2 0.0 5.9e-48 161.7 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SIS_2 PF13580.6 gi|292655327|ref|YP_003535224.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 SIS domain TFIIE_alpha PF02002.17 gi|292655328|ref|YP_003535225.1| - 3.4e-20 71.9 0.4 7.9e-20 70.7 0.1 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|292655328|ref|YP_003535225.1| - 0.014 15.4 0.5 0.025 14.7 0.1 1.7 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_20 PF12840.7 gi|292655328|ref|YP_003535225.1| - 0.1 12.7 1.0 0.25 11.4 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2110 PF09883.9 gi|292655329|ref|YP_003535226.1| - 8.9e-98 326.3 0.0 1e-97 326.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) MoCF_biosynth PF00994.24 gi|292655331|ref|YP_003535228.1| - 1.6e-34 118.6 0.3 2.7e-34 117.9 0.3 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Glyco_trans_4_4 PF13579.6 gi|292655331|ref|YP_003535228.1| - 0.017 15.5 3.7 0.33 11.4 3.7 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain SHR3_chaperone PF08229.11 gi|292655332|ref|YP_003535229.1| - 0.078 12.0 0.1 0.078 12.0 0.1 1.0 1 0 0 1 1 1 0 ER membrane protein SH3 COX8 PF02285.15 gi|292655332|ref|YP_003535229.1| - 0.47 10.4 2.5 1 9.3 2.5 1.6 1 1 0 1 1 1 0 Cytochrome oxidase c subunit VIII NAD_kinase PF01513.21 gi|292655333|ref|YP_003535230.1| - 9.9e-51 172.7 0.2 1.2e-50 172.4 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|292655333|ref|YP_003535230.1| - 1.9e-05 24.3 0.2 1.9e-05 24.3 0.2 2.5 4 0 0 4 4 4 1 Diacylglycerol kinase catalytic domain Peripla_BP_6 PF13458.6 gi|292655333|ref|YP_003535230.1| - 0.00048 19.9 1.3 0.00048 19.9 1.3 2.0 2 0 0 2 2 2 1 Periplasmic binding protein CMD PF02627.20 gi|292655334|ref|YP_003535231.1| - 2.9e-14 52.9 0.0 4.2e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.6 gi|292655334|ref|YP_003535231.1| - 0.071 13.6 0.0 0.087 13.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain PhoU PF01895.19 gi|292655335|ref|YP_003535232.1| - 1.3e-15 57.6 5.2 1.2e-12 48.1 0.0 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|292655335|ref|YP_003535232.1| - 9.4e-09 35.0 0.0 1.8e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin UL20 PF17582.2 gi|292655335|ref|YP_003535232.1| - 0.12 11.6 0.0 0.27 10.5 0.0 1.5 1 1 0 1 1 1 0 Cytomegalovirus UL20 RecQ_Zn_bind PF16124.5 gi|292655337|ref|YP_003535234.1| - 0.15 12.8 0.0 0.34 11.7 0.0 1.7 1 0 0 1 1 1 0 RecQ zinc-binding LEA_2 PF03168.13 gi|292655338|ref|YP_003535235.1| - 2.7e-14 53.5 0.0 8.6e-08 32.6 0.0 2.5 2 0 0 2 2 2 2 Late embryogenesis abundant protein DNA_pol_phi PF04931.13 gi|292655339|ref|YP_003535236.1| - 0.21 9.7 0.1 0.24 9.5 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase phi FaeA PF04703.12 gi|292655340|ref|YP_003535237.1| - 0.00065 20.0 0.1 0.00077 19.8 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.16 gi|292655340|ref|YP_003535237.1| - 0.0024 17.6 0.0 0.0031 17.2 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain Put_DNA-bind_N PF06971.13 gi|292655340|ref|YP_003535237.1| - 0.01 15.8 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_AsnC-type PF13404.6 gi|292655340|ref|YP_003535237.1| - 0.054 13.3 0.2 0.11 12.3 0.2 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Myb_DNA-bind_6 PF13921.6 gi|292655340|ref|YP_003535237.1| - 0.086 13.1 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Myb-like DNA-binding domain Polyketide_cyc2 PF10604.9 gi|292655341|ref|YP_003535238.1| - 2.9e-16 60.0 1.6 3.3e-16 59.9 1.6 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|292655341|ref|YP_003535238.1| - 1.6e-05 24.7 0.0 1.8e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|292655341|ref|YP_003535238.1| - 0.0053 17.0 0.1 0.0064 16.7 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Malt_amylase_C PF16657.5 gi|292655342|ref|YP_003535239.1| - 0.09 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain TFA2_Winged_2 PF18121.1 gi|292655342|ref|YP_003535239.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 1 0 1 1 1 0 TFA2 Winged helix domain 2 Aldedh PF00171.22 gi|292655343|ref|YP_003535240.1| - 1.8e-144 481.7 0.0 2.3e-144 481.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|292655343|ref|YP_003535240.1| - 0.025 13.6 0.0 0.052 12.6 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) OmdA PF13376.6 gi|292655343|ref|YP_003535240.1| - 0.034 14.2 1.1 0.07 13.2 1.1 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated SPOUT_MTase_2 PF14419.6 gi|292655343|ref|YP_003535240.1| - 0.06 12.7 0.0 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP HTH_10 PF04967.12 gi|292655344|ref|YP_003535241.1| - 1.5e-19 69.5 0.2 2.4e-19 68.9 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|292655344|ref|YP_003535241.1| - 0.00049 19.7 1.4 0.0048 16.5 1.4 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|292655344|ref|YP_003535241.1| - 0.00053 20.1 0.1 0.00087 19.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|292655344|ref|YP_003535241.1| - 0.0074 15.8 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|292655344|ref|YP_003535241.1| - 0.0075 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain MarR_2 PF12802.7 gi|292655344|ref|YP_003535241.1| - 0.019 14.8 0.1 0.04 13.8 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|292655344|ref|YP_003535241.1| - 0.022 14.8 0.3 0.06 13.4 0.3 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|292655344|ref|YP_003535241.1| - 0.024 14.5 0.0 0.07 13.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TetR_N PF00440.23 gi|292655344|ref|YP_003535241.1| - 0.092 12.6 0.0 0.24 11.2 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.16 gi|292655344|ref|YP_003535241.1| - 0.11 12.0 0.5 0.3 10.6 0.5 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 Pro_dh PF01619.18 gi|292655345|ref|YP_003535242.1| - 2.2e-25 89.8 0.0 3.1e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Proline dehydrogenase Peripla_BP_6 PF13458.6 gi|292655346|ref|YP_003535243.1| - 2.3e-39 136.0 7.2 2.5e-39 135.9 7.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|292655346|ref|YP_003535243.1| - 8.3e-29 100.8 0.0 1.1e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|292655346|ref|YP_003535243.1| - 2.4e-05 23.5 2.9 0.00018 20.6 0.3 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain BPD_transp_2 PF02653.16 gi|292655347|ref|YP_003535244.1| - 3.2e-28 98.6 16.3 3.9e-28 98.4 16.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2304 PF10066.9 gi|292655347|ref|YP_003535244.1| - 0.065 13.5 0.0 0.065 13.5 0.0 2.9 3 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) HTH_8 PF02954.19 gi|292655347|ref|YP_003535244.1| - 1 9.2 4.1 0.42 10.4 1.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family BPD_transp_2 PF02653.16 gi|292655348|ref|YP_003535245.1| - 1.5e-53 181.7 26.5 1.5e-53 181.7 26.5 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4381 PF14316.6 gi|292655348|ref|YP_003535245.1| - 0.28 11.4 1.0 0.75 10.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) ABC_tran PF00005.27 gi|292655349|ref|YP_003535246.1| - 1.7e-32 112.8 0.0 2.3e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655349|ref|YP_003535246.1| - 6.4e-11 42.6 3.1 6.6e-05 22.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|292655349|ref|YP_003535246.1| - 2.7e-10 39.9 0.0 5.9e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|292655349|ref|YP_003535246.1| - 6.2e-06 25.8 0.0 1.4e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292655349|ref|YP_003535246.1| - 7.3e-05 22.6 0.0 0.003 17.3 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|292655349|ref|YP_003535246.1| - 0.00011 22.8 0.4 0.00018 22.1 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292655349|ref|YP_003535246.1| - 0.0013 18.4 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|292655349|ref|YP_003535246.1| - 0.0058 16.6 0.1 0.013 15.4 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|292655349|ref|YP_003535246.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|292655349|ref|YP_003535246.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|292655349|ref|YP_003535246.1| - 0.19 11.4 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Glyco_transf_88 PF16849.5 gi|292655349|ref|YP_003535246.1| - 0.24 10.3 0.0 0.32 9.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 88 ABC_tran PF00005.27 gi|292655350|ref|YP_003535247.1| - 1.9e-31 109.4 0.0 2.6e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655350|ref|YP_003535247.1| - 7.8e-12 45.6 0.3 9.7e-05 22.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292655350|ref|YP_003535247.1| - 5.8e-05 22.6 0.0 0.0094 15.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|292655350|ref|YP_003535247.1| - 8.4e-05 23.2 0.0 0.00017 22.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292655350|ref|YP_003535247.1| - 0.00019 21.7 0.0 0.0054 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|292655350|ref|YP_003535247.1| - 0.00029 20.5 0.0 0.00051 19.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|292655350|ref|YP_003535247.1| - 0.00047 20.0 0.0 0.0036 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|292655350|ref|YP_003535247.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292655350|ref|YP_003535247.1| - 0.0021 18.5 0.1 0.0032 17.9 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|292655350|ref|YP_003535247.1| - 0.0026 18.2 0.0 0.023 15.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|292655350|ref|YP_003535247.1| - 0.0031 17.4 0.1 0.0072 16.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|292655350|ref|YP_003535247.1| - 0.018 14.8 0.1 0.07 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|292655350|ref|YP_003535247.1| - 0.029 14.9 0.0 0.11 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|292655350|ref|YP_003535247.1| - 0.029 14.3 0.0 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|292655350|ref|YP_003535247.1| - 0.038 14.0 0.0 0.071 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|292655350|ref|YP_003535247.1| - 0.085 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 gi|292655350|ref|YP_003535247.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|292655350|ref|YP_003535247.1| - 0.12 12.5 0.2 0.15 12.2 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|292655350|ref|YP_003535247.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain RIO1 PF01163.22 gi|292655351|ref|YP_003535248.1| - 1.4e-09 37.9 0.0 2.2e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|292655351|ref|YP_003535248.1| - 3.2e-06 26.6 0.0 5.3e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|292655351|ref|YP_003535248.1| - 3.2e-06 27.2 3.4 0.025 14.5 0.9 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|292655351|ref|YP_003535248.1| - 0.00011 21.7 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|292655351|ref|YP_003535248.1| - 0.064 12.5 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase Kinase-PolyVal PF18762.1 gi|292655351|ref|YP_003535248.1| - 0.067 13.1 0.2 0.098 12.6 0.2 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Usp PF00582.26 gi|292655352|ref|YP_003535249.1| - 6.7e-41 140.1 4.2 7.4e-41 140.0 4.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|292655352|ref|YP_003535249.1| - 0.003 17.2 0.1 0.0054 16.3 0.1 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DNA_photolyase PF00875.18 gi|292655352|ref|YP_003535249.1| - 0.028 14.4 0.2 0.042 13.9 0.2 1.3 1 0 0 1 1 1 0 DNA photolyase Band_7 PF01145.25 gi|292655352|ref|YP_003535249.1| - 0.032 14.2 0.3 0.041 13.9 0.3 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family XPB_DRD PF18458.1 gi|292655352|ref|YP_003535249.1| - 0.061 13.2 1.7 0.087 12.7 0.6 1.9 2 0 0 2 2 2 0 Xeroderma pigmentosum group B helicase damage recognition domain Adhesin_P1_N PF18652.1 gi|292655352|ref|YP_003535249.1| - 0.22 11.6 2.1 0.38 10.8 0.2 2.0 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|292655353|ref|YP_003535250.1| - 9.3e-48 162.2 1.0 1.4e-47 161.7 1.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|292655353|ref|YP_003535250.1| - 1.5e-37 128.7 0.2 3.3e-37 127.6 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|292655353|ref|YP_003535250.1| - 1.7e-24 85.8 0.0 2.6e-24 85.2 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|292655353|ref|YP_003535250.1| - 9.7e-16 58.3 2.0 9.7e-16 58.3 2.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|292655353|ref|YP_003535250.1| - 0.031 14.0 2.6 0.13 11.9 0.5 2.6 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Arch_fla_DE PF04659.13 gi|292655354|ref|YP_003535251.1| - 2.1e-20 72.4 0.0 3.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal flagella protein HisKA_7TM PF16927.5 gi|292655355|ref|YP_003535252.1| - 1.1e-41 143.2 15.6 1.5e-41 142.9 15.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS PF00989.25 gi|292655355|ref|YP_003535252.1| - 1.7e-25 89.2 0.1 6.5e-13 48.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|292655355|ref|YP_003535252.1| - 2.6e-23 82.4 7.0 8.6e-13 48.5 0.4 2.5 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|292655355|ref|YP_003535252.1| - 5.5e-17 61.8 0.0 2.2e-16 59.9 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|292655355|ref|YP_003535252.1| - 5.7e-11 42.6 0.0 1.6e-07 31.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|292655355|ref|YP_003535252.1| - 2.2e-09 37.8 0.0 4.4e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|292655355|ref|YP_003535252.1| - 4.1e-06 26.9 0.7 0.007 16.5 0.2 3.6 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|292655355|ref|YP_003535252.1| - 1.9e-05 24.5 0.3 0.081 13.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|292655355|ref|YP_003535252.1| - 2e-05 24.5 0.1 7.3e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|292655355|ref|YP_003535252.1| - 4.1e-05 23.5 0.5 0.00012 22.1 0.5 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|292655355|ref|YP_003535252.1| - 0.0026 17.4 0.2 0.0026 17.4 0.2 2.3 3 0 0 3 3 3 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|292655355|ref|YP_003535252.1| - 0.0088 15.9 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|292655355|ref|YP_003535252.1| - 0.013 15.6 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.6 gi|292655355|ref|YP_003535252.1| - 0.24 11.2 0.5 0.57 9.9 0.5 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain MreB_Mbl PF06723.13 gi|292655356|ref|YP_003535253.1| - 0.1 11.4 0.0 0.3 9.9 0.0 1.9 1 1 0 1 1 1 0 MreB/Mbl protein Arch_fla_DE PF04659.13 gi|292655357|ref|YP_003535254.1| - 4.4e-27 93.8 0.0 6e-27 93.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein DUF835 PF05763.12 gi|292655357|ref|YP_003535254.1| - 0.074 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) CheD PF03975.13 gi|292655359|ref|YP_003535256.1| - 4.2e-30 104.1 0.0 5.5e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Cu-oxidase_4 PF02578.15 gi|292655359|ref|YP_003535256.1| - 0.056 13.1 0.1 0.079 12.6 0.1 1.4 1 1 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase CheC PF04509.12 gi|292655360|ref|YP_003535257.1| - 1.2e-25 89.1 0.0 3.1e-13 49.4 0.0 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|292655360|ref|YP_003535257.1| - 3.9e-22 78.3 0.0 7e-10 39.0 0.0 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.24 gi|292655361|ref|YP_003535258.1| - 1.6e-30 105.5 0.1 1.8e-30 105.4 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ADH_zinc_N PF00107.26 gi|292655361|ref|YP_003535258.1| - 0.017 15.1 0.5 0.25 11.3 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Pneumo_att_G PF05539.11 gi|292655362|ref|YP_003535259.1| - 0.16 11.5 0.3 0.19 11.3 0.3 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G HTH_20 PF12840.7 gi|292655363|ref|YP_003535260.1| - 9e-09 35.3 0.3 1.3e-08 34.7 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292655363|ref|YP_003535260.1| - 0.00017 21.5 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|292655363|ref|YP_003535260.1| - 0.0011 18.5 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292655363|ref|YP_003535260.1| - 0.0023 17.8 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|292655363|ref|YP_003535260.1| - 0.0027 17.6 0.0 0.0053 16.6 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292655363|ref|YP_003535260.1| - 0.0043 16.8 0.0 0.0066 16.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrfA PF07042.11 gi|292655363|ref|YP_003535260.1| - 0.042 12.9 0.0 0.047 12.7 0.0 1.1 1 0 0 1 1 1 0 TrfA protein HTH_47 PF16221.5 gi|292655363|ref|YP_003535260.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 winged helix-turn-helix Arch_flagellin PF01917.16 gi|292655364|ref|YP_003535261.1| - 3.7e-33 115.0 14.8 4.6e-33 114.7 14.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin RF-1 PF00472.20 gi|292655364|ref|YP_003535261.1| - 0.024 14.5 0.4 0.05 13.5 0.4 1.4 1 0 0 1 1 1 0 RF-1 domain Arch_flagellin PF01917.16 gi|292655365|ref|YP_003535262.1| - 3.3e-36 124.9 15.5 4.1e-36 124.6 15.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin ATPase PF06745.13 gi|292655366|ref|YP_003535263.1| - 1.4e-50 171.9 0.0 1.6e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|292655366|ref|YP_003535263.1| - 3.4e-06 26.8 0.0 4.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|292655366|ref|YP_003535263.1| - 0.0022 17.3 0.0 0.003 16.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|292655366|ref|YP_003535263.1| - 0.012 14.9 0.2 0.015 14.5 0.2 1.3 1 1 0 1 1 1 0 Rad51 AAA_24 PF13479.6 gi|292655366|ref|YP_003535263.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain GvpD PF07088.11 gi|292655366|ref|YP_003535263.1| - 0.019 13.6 0.2 0.41 9.2 0.2 2.1 1 1 0 1 1 1 0 GvpD gas vesicle protein DnaB_C PF03796.15 gi|292655366|ref|YP_003535263.1| - 0.14 11.5 0.0 0.19 11.0 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain FlaC_arch PF05377.11 gi|292655367|ref|YP_003535264.1| - 1.4e-22 79.8 0.4 4.3e-22 78.3 0.4 1.9 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Arch_fla_DE PF04659.13 gi|292655367|ref|YP_003535264.1| - 1.4e-20 72.9 0.0 3.5e-20 71.7 0.0 1.7 1 0 0 1 1 1 1 Archaeal flagella protein DUF812 PF05667.11 gi|292655367|ref|YP_003535264.1| - 0.0041 16.1 0.0 0.0068 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ZapB PF06005.12 gi|292655367|ref|YP_003535264.1| - 0.0084 16.5 0.9 0.035 14.5 0.5 2.2 2 0 0 2 2 2 1 Cell division protein ZapB NPV_P10 PF05531.12 gi|292655367|ref|YP_003535264.1| - 0.03 14.8 0.5 0.077 13.5 0.1 1.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|292655367|ref|YP_003535264.1| - 0.037 14.5 0.1 0.11 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF16 bZIP_1 PF00170.21 gi|292655367|ref|YP_003535264.1| - 0.038 14.1 0.5 0.21 11.7 0.5 2.2 1 1 0 1 1 1 0 bZIP transcription factor DUF1664 PF07889.12 gi|292655367|ref|YP_003535264.1| - 0.043 13.9 0.5 0.097 12.7 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|292655367|ref|YP_003535264.1| - 0.12 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Sec34-like family SKA2 PF16740.5 gi|292655367|ref|YP_003535264.1| - 0.14 12.0 0.2 0.51 10.1 0.0 1.9 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Arch_flagellin PF01917.16 gi|292655368|ref|YP_003535265.1| - 1.6e-09 38.2 8.7 1.8e-09 38.0 8.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|292655369|ref|YP_003535266.1| - 1.7e-19 70.6 4.1 2e-19 70.4 4.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|292655369|ref|YP_003535266.1| - 1.9e-05 24.9 0.2 2.8e-05 24.3 0.2 1.2 1 0 0 1 1 1 1 CARDB ATPase PF06745.13 gi|292655370|ref|YP_003535267.1| - 5.5e-18 65.2 0.1 1e-17 64.3 0.1 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|292655370|ref|YP_003535267.1| - 6.6e-06 25.8 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|292655370|ref|YP_003535267.1| - 9.8e-06 25.6 0.1 2.6e-05 24.2 0.1 1.7 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|292655370|ref|YP_003535267.1| - 7.6e-05 23.0 0.1 0.00016 22.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292655370|ref|YP_003535267.1| - 0.00046 20.6 1.7 0.00087 19.7 1.7 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 gi|292655370|ref|YP_003535267.1| - 0.0026 17.1 0.8 0.0093 15.3 0.8 1.8 1 1 0 1 1 1 1 Rad51 AAA PF00004.29 gi|292655370|ref|YP_003535267.1| - 0.016 15.6 0.4 0.042 14.3 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAXNEB PF05625.11 gi|292655370|ref|YP_003535267.1| - 0.028 13.6 0.1 0.37 9.9 0.2 2.0 2 0 0 2 2 2 0 PAXNEB protein TIP49 PF06068.13 gi|292655370|ref|YP_003535267.1| - 0.034 13.4 0.0 2 7.5 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain TsaE PF02367.17 gi|292655370|ref|YP_003535267.1| - 0.037 14.0 0.0 0.074 13.1 0.0 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|292655370|ref|YP_003535267.1| - 0.046 14.3 0.0 0.086 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain Resolvase PF00239.21 gi|292655370|ref|YP_003535267.1| - 0.052 13.7 0.1 0.081 13.0 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain CofC PF01983.16 gi|292655370|ref|YP_003535267.1| - 0.062 12.5 0.1 0.088 12.0 0.1 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like FF PF01846.19 gi|292655370|ref|YP_003535267.1| - 0.065 13.4 0.3 0.3 11.3 0.1 2.1 1 1 1 2 2 2 0 FF domain RecA PF00154.21 gi|292655370|ref|YP_003535267.1| - 0.067 12.6 0.7 0.22 11.0 0.3 2.0 1 1 0 2 2 2 0 recA bacterial DNA recombination protein DUF2075 PF09848.9 gi|292655370|ref|YP_003535267.1| - 0.21 10.8 0.0 0.23 10.7 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|292655371|ref|YP_003535268.1| - 4.1e-44 150.7 0.0 5.7e-44 150.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|292655371|ref|YP_003535268.1| - 0.00042 20.8 0.0 0.0025 18.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292655371|ref|YP_003535268.1| - 0.0014 19.0 0.0 0.0027 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|292655371|ref|YP_003535268.1| - 0.0092 15.7 0.0 0.037 13.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|292655371|ref|YP_003535268.1| - 0.029 14.9 0.0 0.086 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|292655371|ref|YP_003535268.1| - 0.052 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|292655371|ref|YP_003535268.1| - 0.057 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_7 PF12775.7 gi|292655371|ref|YP_003535268.1| - 0.071 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|292655371|ref|YP_003535268.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_23 PF13476.6 gi|292655371|ref|YP_003535268.1| - 0.5 10.8 1.9 0.55 10.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|292655372|ref|YP_003535269.1| - 7.3e-16 58.3 1.9 1.6e-10 41.0 0.2 3.9 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.6 gi|292655372|ref|YP_003535269.1| - 0.19 10.5 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF1616 PF07760.11 gi|292655372|ref|YP_003535269.1| - 1.6 8.1 9.3 0.075 12.4 3.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) CheF-arch PF04283.12 gi|292655373|ref|YP_003535270.1| - 5.7e-51 173.4 0.0 8.2e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea AbrB PF05145.12 gi|292655374|ref|YP_003535271.1| - 0.025 13.5 1.7 0.025 13.5 1.2 1.3 1 1 0 1 1 1 0 Transition state regulatory protein AbrB CheF-arch PF04283.12 gi|292655375|ref|YP_003535272.1| - 2.1e-68 230.3 0.1 3.3e-68 229.7 0.1 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea CheR PF01739.18 gi|292655376|ref|YP_003535273.1| - 3.9e-48 163.5 0.0 4.9e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|292655376|ref|YP_003535273.1| - 2.7e-12 46.2 3.5 6.4e-12 45.0 3.5 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|292655376|ref|YP_003535273.1| - 6.2e-08 33.3 0.0 7.2e-06 26.7 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292655376|ref|YP_003535273.1| - 2.4e-06 28.2 0.1 0.0011 19.7 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655376|ref|YP_003535273.1| - 5.5e-05 23.0 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655376|ref|YP_003535273.1| - 0.00029 20.7 0.0 0.00042 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655376|ref|YP_003535273.1| - 0.0023 18.5 0.1 0.2 12.3 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain Acetyltransf_6 PF13480.7 gi|292655376|ref|YP_003535273.1| - 0.059 13.5 6.7 0.05 13.8 1.1 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain NodS PF05401.11 gi|292655376|ref|YP_003535273.1| - 0.06 13.0 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Glyco_hydro_2_C PF02836.17 gi|292655376|ref|YP_003535273.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain TehB PF03848.14 gi|292655376|ref|YP_003535273.1| - 0.18 11.2 0.0 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Tellurite resistance protein TehB HATPase_c PF02518.26 gi|292655377|ref|YP_003535274.1| - 1.1e-19 70.9 0.7 4.5e-19 69.0 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|292655377|ref|YP_003535274.1| - 4.5e-19 68.4 2.4 8.7e-19 67.5 1.6 1.9 2 0 0 2 2 2 1 CheW-like domain Hpt PF01627.23 gi|292655377|ref|YP_003535274.1| - 6.8e-18 64.7 1.5 3.6e-17 62.4 0.3 2.8 2 1 0 2 2 2 1 Hpt domain P2 PF07194.11 gi|292655377|ref|YP_003535274.1| - 7.8e-10 38.7 0.0 7.7e-09 35.5 0.0 2.7 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|292655377|ref|YP_003535274.1| - 4.8e-05 23.7 4.1 0.00018 21.8 4.1 2.1 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|292655377|ref|YP_003535274.1| - 0.029 14.3 0.9 0.1 12.6 0.1 2.4 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|292655377|ref|YP_003535274.1| - 0.038 13.9 0.0 0.11 12.4 0.0 1.7 1 1 0 1 1 1 0 GHKL domain CheB_methylest PF01339.17 gi|292655378|ref|YP_003535275.1| - 1.3e-55 187.7 0.2 3.3e-55 186.4 0.2 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|292655378|ref|YP_003535275.1| - 7.1e-28 97.0 0.9 2.2e-27 95.4 0.4 2.0 2 0 0 2 2 2 1 Response regulator receiver domain DUF2249 PF10006.9 gi|292655378|ref|YP_003535275.1| - 0.091 12.6 0.0 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) CheW PF01584.19 gi|292655379|ref|YP_003535276.1| - 7.4e-25 87.2 0.1 8.2e-25 87.1 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MFS_1 PF07690.16 gi|292655380|ref|YP_003535277.1| - 0.11 11.4 21.3 0.15 10.9 21.3 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF373 PF04123.13 gi|292655380|ref|YP_003535277.1| - 0.11 11.9 2.8 0.14 11.6 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4407 PF14362.6 gi|292655380|ref|YP_003535277.1| - 0.13 11.6 6.7 0.21 10.9 6.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Xan_ur_permease PF00860.20 gi|292655381|ref|YP_003535278.1| - 3.7e-69 233.3 48.0 2.3e-68 230.7 48.0 2.3 1 1 0 1 1 1 1 Permease family YrhK PF14145.6 gi|292655381|ref|YP_003535278.1| - 3.4 7.6 7.7 0.41 10.6 0.5 3.1 3 0 0 3 3 3 0 YrhK-like protein DUF5059 PF16502.5 gi|292655382|ref|YP_003535279.1| - 3.5e-275 914.6 123.4 3.5e-275 914.6 123.4 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|292655382|ref|YP_003535279.1| - 6.8e-14 52.1 0.2 2.7e-13 50.2 0.2 2.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|292655382|ref|YP_003535279.1| - 0.00057 19.6 0.5 0.00057 19.6 0.5 4.8 6 0 0 6 6 6 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|292655382|ref|YP_003535279.1| - 0.028 14.5 0.1 0.3 11.2 0.1 2.2 1 1 0 1 1 1 0 Cupredoxin-like domain MS_channel PF00924.18 gi|292655384|ref|YP_003535281.1| - 7.8e-47 159.5 0.0 9.4e-47 159.2 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel YajC PF02699.15 gi|292655384|ref|YP_003535281.1| - 0.19 11.6 0.1 0.36 10.8 0.1 1.4 1 0 0 1 1 1 0 Preprotein translocase subunit YdjM PF04307.14 gi|292655385|ref|YP_003535282.1| - 1.3e-16 60.4 11.0 8.6e-16 57.7 11.0 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase LapA_dom PF06305.11 gi|292655385|ref|YP_003535282.1| - 2.4 8.0 0.0 2.4 8.0 0.0 3.2 5 0 0 5 5 5 0 Lipopolysaccharide assembly protein A domain CMD PF02627.20 gi|292655386|ref|YP_003535283.1| - 3.9e-09 36.4 0.1 4.7e-08 33.0 0.0 2.3 1 1 1 2 2 2 1 Carboxymuconolactone decarboxylase family CSD PF00313.22 gi|292655387|ref|YP_003535284.1| - 5.3e-22 77.4 0.2 5.8e-22 77.3 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|292655387|ref|YP_003535284.1| - 0.0042 16.7 1.6 0.0069 16.0 1.6 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain S1-like PF14444.6 gi|292655387|ref|YP_003535284.1| - 0.015 15.2 0.5 0.02 14.8 0.5 1.4 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.8 gi|292655387|ref|YP_003535284.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Rho_RNA_bind PF07497.12 gi|292655387|ref|YP_003535284.1| - 0.16 11.9 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain DPRP PF04244.13 gi|292655388|ref|YP_003535285.1| - 1.2e-65 221.6 0.0 1.7e-65 221.0 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|292655388|ref|YP_003535285.1| - 0.0049 16.4 0.1 0.0086 15.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DUF4129 PF13559.6 gi|292655388|ref|YP_003535285.1| - 3.5 8.0 7.2 1.9 8.8 1.2 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4129) Creatininase PF02633.14 gi|292655389|ref|YP_003535286.1| - 3.2e-68 229.8 0.3 3.6e-68 229.6 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase AMP-binding PF00501.28 gi|292655390|ref|YP_003535287.1| - 6.2e-77 259.0 0.0 7.4e-77 258.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655390|ref|YP_003535287.1| - 5.6e-23 81.7 0.3 1.6e-22 80.3 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Bactofilin PF04519.13 gi|292655391|ref|YP_003535288.1| - 1.5e-09 38.0 8.5 2.5e-09 37.3 8.5 1.3 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Aldo_ket_red PF00248.21 gi|292655392|ref|YP_003535289.1| - 4.8e-73 245.9 0.0 5.9e-73 245.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_5 PF07878.11 gi|292655392|ref|YP_003535289.1| - 0.057 13.3 0.3 0.14 12.1 0.3 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 MFS_1 PF07690.16 gi|292655393|ref|YP_003535290.1| - 8.6e-30 103.8 67.8 5.9e-19 68.2 31.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292655393|ref|YP_003535290.1| - 0.25 10.1 25.7 17 4.1 25.3 3.3 1 1 0 1 1 1 0 MFS_1 like family Iron_transport PF10634.9 gi|292655394|ref|YP_003535291.1| - 7.8e-08 32.6 0.0 3.4e-05 24.1 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein TAT_signal PF10518.9 gi|292655394|ref|YP_003535291.1| - 0.0016 18.2 5.1 0.0016 18.2 5.1 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655394|ref|YP_003535291.1| - 0.91 8.9 4.9 0.16 11.4 1.1 1.7 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SCO1-SenC PF02630.14 gi|292655395|ref|YP_003535292.1| - 8.4e-15 54.9 0.0 1.1e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|292655395|ref|YP_003535292.1| - 0.034 14.0 6.2 0.051 13.4 6.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|292655396|ref|YP_003535293.1| - 1.6e-06 27.7 2.5 4.1e-06 26.4 2.5 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655396|ref|YP_003535293.1| - 0.088 12.2 0.3 0.088 12.2 0.3 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DsbD PF02683.15 gi|292655397|ref|YP_003535294.1| - 2e-08 34.4 15.1 5e-08 33.1 15.1 1.7 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.10 gi|292655398|ref|YP_003535295.1| - 4.3e-12 46.0 0.0 5.2e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|292655398|ref|YP_003535295.1| - 3.9e-09 36.5 0.0 5.1e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|292655398|ref|YP_003535295.1| - 3e-06 27.4 0.0 6.5e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|292655398|ref|YP_003535295.1| - 5.7e-05 23.5 0.0 0.00011 22.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|292655398|ref|YP_003535295.1| - 0.00018 21.5 0.0 0.0012 18.8 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin TGF_beta_GS PF08515.12 gi|292655398|ref|YP_003535295.1| - 0.036 13.6 2.2 0.16 11.5 0.4 2.3 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif CytB6-F_Fe-S PF08802.10 gi|292655398|ref|YP_003535295.1| - 0.087 12.9 1.3 0.19 11.8 1.3 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Thioredoxin_4 PF13462.6 gi|292655399|ref|YP_003535296.1| - 1.9e-40 138.7 0.0 2.2e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|292655399|ref|YP_003535296.1| - 7.3e-09 35.7 1.7 0.00021 21.2 0.1 2.1 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 gi|292655399|ref|YP_003535296.1| - 0.091 12.8 0.0 0.4 10.8 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin domain Fer2 PF00111.27 gi|292655400|ref|YP_003535297.1| - 1e-10 41.4 0.7 2.2e-10 40.3 0.1 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|292655400|ref|YP_003535297.1| - 0.0036 17.3 0.4 0.015 15.3 0.4 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NUDIX PF00293.28 gi|292655401|ref|YP_003535298.1| - 7.3e-19 68.1 0.1 1.2e-18 67.4 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|292655401|ref|YP_003535298.1| - 0.089 12.8 0.0 0.18 11.8 0.0 1.5 1 1 0 1 1 1 0 NUDIX domain DUF1918 PF08940.11 gi|292655402|ref|YP_003535299.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) DUF3862 PF12978.7 gi|292655402|ref|YP_003535299.1| - 0.024 14.5 0.1 0.026 14.4 0.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3862) NifZ PF04319.13 gi|292655402|ref|YP_003535299.1| - 0.074 12.9 0.2 0.12 12.2 0.1 1.3 1 1 0 1 1 1 0 NifZ domain RNA_binding PF01877.17 gi|292655403|ref|YP_003535300.1| - 9.8e-31 106.5 0.1 1.4e-30 106.0 0.1 1.3 1 1 0 1 1 1 1 RNA binding AhpC-TSA PF00578.21 gi|292655404|ref|YP_003535301.1| - 6.9e-16 58.3 0.0 9.5e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|292655404|ref|YP_003535301.1| - 3.5e-13 49.5 0.0 4.8e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin TatD_DNase PF01026.21 gi|292655404|ref|YP_003535301.1| - 0.023 14.1 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase PBP-Tp47_a PF14889.6 gi|292655404|ref|YP_003535301.1| - 0.076 12.7 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain a Thioredoxin_8 PF13905.6 gi|292655404|ref|YP_003535301.1| - 0.1 12.9 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like EamA PF00892.20 gi|292655405|ref|YP_003535302.1| - 4.5e-06 26.9 14.9 5.9e-06 26.5 14.9 1.3 1 1 0 1 1 1 1 EamA-like transporter family DUF4407 PF14362.6 gi|292655405|ref|YP_003535302.1| - 0.27 10.6 6.6 0.06 12.7 3.2 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) zf-Di19 PF05605.12 gi|292655406|ref|YP_003535303.1| - 0.11 12.9 0.2 0.25 11.7 0.2 1.7 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding UBZ_FAAP20 PF15750.5 gi|292655406|ref|YP_003535303.1| - 0.15 12.0 1.0 8.9 6.4 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-binding zinc-finger SnoaL PF07366.12 gi|292655407|ref|YP_003535304.1| - 1.2e-16 60.6 0.2 1.4e-16 60.5 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|292655407|ref|YP_003535304.1| - 1.4e-10 41.8 2.5 1.6e-10 41.5 2.5 1.1 1 0 0 1 1 1 1 SnoaL-like domain MFS_1 PF07690.16 gi|292655409|ref|YP_003535306.1| - 8.7e-41 140.0 50.8 3e-22 79.0 20.0 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|292655409|ref|YP_003535306.1| - 0.00043 18.7 3.0 0.0013 17.2 2.1 2.3 1 1 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|292655409|ref|YP_003535306.1| - 0.021 13.7 19.9 0.0049 15.8 15.3 2.1 2 1 0 2 2 2 0 Sugar (and other) transporter DUF58 PF01882.18 gi|292655410|ref|YP_003535307.1| - 1.7e-20 73.1 0.0 2.7e-19 69.2 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|292655410|ref|YP_003535307.1| - 0.0011 19.6 0.0 0.0025 18.5 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|292655410|ref|YP_003535307.1| - 0.0016 17.9 0.4 0.059 12.7 0.1 2.5 3 0 0 3 3 3 1 VWA domain containing CoxE-like protein YAcAr PF10686.9 gi|292655410|ref|YP_003535307.1| - 0.094 12.7 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family AAA_3 PF07726.11 gi|292655411|ref|YP_003535308.1| - 2.1e-60 202.3 0.1 3.2e-60 201.7 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|292655411|ref|YP_003535308.1| - 3.6e-20 71.6 0.7 7.7e-20 70.5 0.7 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|292655411|ref|YP_003535308.1| - 7.6e-12 45.4 0.0 1.3e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|292655411|ref|YP_003535308.1| - 7.5e-06 25.2 0.0 1.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|292655411|ref|YP_003535308.1| - 9.3e-06 26.1 0.0 1.4e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|292655411|ref|YP_003535308.1| - 0.001 18.8 0.0 0.0095 15.7 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|292655411|ref|YP_003535308.1| - 0.019 14.7 0.0 0.77 9.5 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|292655411|ref|YP_003535308.1| - 0.022 14.1 0.0 0.4 10.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Vma12 PF11712.8 gi|292655412|ref|YP_003535309.1| - 0.16 12.0 1.7 0.36 10.9 1.7 1.6 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF1664 PF07889.12 gi|292655413|ref|YP_003535310.1| - 1e-09 38.5 14.0 2.7e-05 24.2 4.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) HemX PF04375.14 gi|292655413|ref|YP_003535310.1| - 1.9e-09 37.3 17.7 1.2e-06 28.1 6.1 2.0 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase Laminin_II PF06009.12 gi|292655413|ref|YP_003535310.1| - 9.3e-09 35.4 23.4 1.1e-06 28.8 7.4 3.0 1 1 2 3 3 3 2 Laminin Domain II DUF3450 PF11932.8 gi|292655413|ref|YP_003535310.1| - 1.6e-08 34.1 23.0 7.1e-05 22.2 10.3 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) AAA_13 PF13166.6 gi|292655413|ref|YP_003535310.1| - 5.2e-08 32.0 12.6 6.4e-08 31.7 12.6 1.0 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.11 gi|292655413|ref|YP_003535310.1| - 5.3e-08 32.1 26.5 1.5e-07 30.6 26.5 1.6 1 1 0 1 1 1 1 Spc7 kinetochore protein EzrA PF06160.12 gi|292655413|ref|YP_003535310.1| - 7.4e-08 31.0 14.5 1.9e-07 29.7 14.4 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.7 gi|292655413|ref|YP_003535310.1| - 7.7e-08 32.6 33.9 0.00051 20.2 2.4 3.2 1 1 2 3 3 3 3 Tropomyosin like TPR_MLP1_2 PF07926.12 gi|292655413|ref|YP_003535310.1| - 1e-07 32.1 34.0 2.5e-06 27.6 29.3 3.0 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Filament PF00038.21 gi|292655413|ref|YP_003535310.1| - 1.7e-07 31.2 26.3 1.6e-05 24.6 15.2 2.6 1 1 1 2 2 2 2 Intermediate filament protein Prefoldin_2 PF01920.20 gi|292655413|ref|YP_003535310.1| - 4.2e-07 29.9 25.8 0.00056 19.8 1.2 4.1 1 1 3 4 4 4 3 Prefoldin subunit ADIP PF11559.8 gi|292655413|ref|YP_003535310.1| - 4.4e-07 30.1 30.6 0.0002 21.5 7.4 3.0 1 1 2 3 3 3 3 Afadin- and alpha -actinin-Binding Mod_r PF07200.13 gi|292655413|ref|YP_003535310.1| - 6.2e-07 29.6 26.8 0.0012 19.0 10.0 2.7 1 1 2 3 3 3 2 Modifier of rudimentary (Mod(r)) protein DivIC PF04977.15 gi|292655413|ref|YP_003535310.1| - 6.8e-07 29.0 27.9 0.0078 16.0 8.8 4.3 1 1 2 3 3 3 2 Septum formation initiator Atg14 PF10186.9 gi|292655413|ref|YP_003535310.1| - 1.5e-06 27.5 24.4 0.00036 19.7 11.1 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4201 PF13870.6 gi|292655413|ref|YP_003535310.1| - 1.7e-06 27.9 19.7 2.2e-06 27.6 12.6 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) ATG16 PF08614.11 gi|292655413|ref|YP_003535310.1| - 2e-06 28.2 36.9 5.5e-06 26.7 36.9 1.6 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) FliJ PF02050.16 gi|292655413|ref|YP_003535310.1| - 2.3e-06 27.9 19.6 0.00058 20.1 6.4 2.9 1 1 2 3 3 3 3 Flagellar FliJ protein DUF4200 PF13863.6 gi|292655413|ref|YP_003535310.1| - 2.4e-06 27.9 13.2 2.4e-06 27.9 13.2 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) GAS PF13851.6 gi|292655413|ref|YP_003535310.1| - 2.7e-06 26.9 31.7 0.00012 21.5 11.6 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|292655413|ref|YP_003535310.1| - 3.2e-06 27.2 30.7 0.0087 16.1 8.4 2.9 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MAD PF05557.13 gi|292655413|ref|YP_003535310.1| - 3.2e-06 25.8 26.5 8.2e-06 24.5 26.5 1.5 1 1 0 1 1 1 1 Mitotic checkpoint protein AIP3 PF03915.13 gi|292655413|ref|YP_003535310.1| - 4.1e-06 26.2 13.7 5e-06 25.9 13.7 1.0 1 0 0 1 1 1 1 Actin interacting protein 3 DUF3584 PF12128.8 gi|292655413|ref|YP_003535310.1| - 4.7e-06 24.5 21.7 7.2e-06 23.9 21.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HMMR_N PF15905.5 gi|292655413|ref|YP_003535310.1| - 4.8e-06 26.3 23.7 0.00082 18.9 10.3 2.0 1 1 1 2 2 2 2 Hyaluronan mediated motility receptor N-terminal PEARLI-4 PF05278.12 gi|292655413|ref|YP_003535310.1| - 5e-06 26.3 1.6 5e-06 26.3 1.6 2.7 1 1 2 3 3 3 1 Arabidopsis phospholipase-like protein (PEARLI 4) FPP PF05911.11 gi|292655413|ref|YP_003535310.1| - 6.5e-06 24.7 26.9 0.00018 19.9 27.0 1.9 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil TMF_DNA_bd PF12329.8 gi|292655413|ref|YP_003535310.1| - 6.9e-06 26.0 33.9 9.5e-06 25.5 8.5 3.4 1 1 1 2 2 1 1 TATA element modulatory factor 1 DNA binding Laminin_I PF06008.14 gi|292655413|ref|YP_003535310.1| - 7.3e-06 25.9 20.0 0.012 15.3 1.1 2.4 2 1 0 2 2 2 2 Laminin Domain I APG6_N PF17675.1 gi|292655413|ref|YP_003535310.1| - 8.9e-06 26.3 36.0 1.8e-05 25.3 22.5 2.1 1 1 1 2 2 2 1 Apg6 coiled-coil region Leu_zip PF15294.6 gi|292655413|ref|YP_003535310.1| - 9.4e-06 25.3 21.5 0.0007 19.2 12.1 2.1 1 1 1 2 2 2 1 Leucine zipper HrpB7 PF09486.10 gi|292655413|ref|YP_003535310.1| - 1.4e-05 25.5 22.1 0.022 15.1 14.8 3.0 1 1 2 3 3 3 3 Bacterial type III secretion protein (HrpB7) Fez1 PF06818.15 gi|292655413|ref|YP_003535310.1| - 1.7e-05 25.3 24.5 0.00077 20.0 6.1 2.3 1 1 1 2 2 2 2 Fez1 TolA_bind_tri PF16331.5 gi|292655413|ref|YP_003535310.1| - 2.1e-05 24.5 32.9 0.033 14.3 6.9 4.3 1 1 3 4 4 4 2 TolA binding protein trimerisation ApoLp-III PF07464.11 gi|292655413|ref|YP_003535310.1| - 2.4e-05 24.5 12.8 0.26 11.4 0.5 3.3 1 1 2 3 3 3 2 Apolipophorin-III precursor (apoLp-III) PspA_IM30 PF04012.12 gi|292655413|ref|YP_003535310.1| - 2.8e-05 23.8 20.1 0.00095 18.8 2.3 3.1 1 1 2 3 3 3 1 PspA/IM30 family COG2 PF06148.11 gi|292655413|ref|YP_003535310.1| - 4.5e-05 23.6 16.9 0.0012 18.9 8.9 3.1 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 BRE1 PF08647.11 gi|292655413|ref|YP_003535310.1| - 4.8e-05 23.4 21.4 0.00085 19.3 6.0 3.8 2 2 2 4 4 4 2 BRE1 E3 ubiquitin ligase Flagellin_C PF00700.21 gi|292655413|ref|YP_003535310.1| - 5.5e-05 23.5 16.4 0.01 16.2 1.5 3.8 1 1 3 4 4 3 2 Bacterial flagellin C-terminal helical region KxDL PF10241.9 gi|292655413|ref|YP_003535310.1| - 5.9e-05 23.3 16.4 0.089 13.1 3.3 3.3 1 1 2 3 3 3 2 Uncharacterized conserved protein FlaC_arch PF05377.11 gi|292655413|ref|YP_003535310.1| - 6.2e-05 23.3 28.1 0.86 10.0 8.2 5.1 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|292655413|ref|YP_003535310.1| - 6.4e-05 23.2 24.6 0.062 13.4 25.2 2.1 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Uso1_p115_C PF04871.13 gi|292655413|ref|YP_003535310.1| - 6.9e-05 23.2 28.2 0.0021 18.4 15.9 2.7 1 1 1 2 2 2 1 Uso1 / p115 like vesicle tethering protein, C terminal region BLOC1_2 PF10046.9 gi|292655413|ref|YP_003535310.1| - 9.8e-05 22.6 22.7 0.023 15.0 12.9 3.6 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.7 gi|292655413|ref|YP_003535310.1| - 0.0001 22.0 40.6 0.00087 18.9 40.6 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain DHR10 PF18595.1 gi|292655413|ref|YP_003535310.1| - 0.00011 22.3 32.9 0.0033 17.5 8.7 3.0 1 1 2 3 3 3 2 Designed helical repeat protein 10 domain IFT57 PF10498.9 gi|292655413|ref|YP_003535310.1| - 0.00012 21.2 21.8 0.0043 16.1 10.1 2.2 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 Rab5-bind PF09311.11 gi|292655413|ref|YP_003535310.1| - 0.00013 21.5 25.2 0.024 14.0 15.1 2.6 1 1 1 2 2 2 2 Rabaptin-like protein CALCOCO1 PF07888.11 gi|292655413|ref|YP_003535310.1| - 0.00015 20.8 24.2 0.00021 20.3 24.2 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Wtap PF17098.5 gi|292655413|ref|YP_003535310.1| - 0.00018 21.5 24.2 0.00018 21.4 23.5 1.4 1 1 0 1 1 1 1 WTAP/Mum2p family KASH_CCD PF14662.6 gi|292655413|ref|YP_003535310.1| - 0.00021 21.2 30.9 0.00091 19.1 23.4 2.1 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 or KASH Uds1 PF15456.6 gi|292655413|ref|YP_003535310.1| - 0.00024 21.3 22.6 0.0019 18.4 15.0 2.3 1 1 1 2 2 2 1 Up-regulated During Septation DUF4407 PF14362.6 gi|292655413|ref|YP_003535310.1| - 0.00029 20.3 28.9 0.0028 17.1 1.2 2.6 1 1 2 3 3 2 2 Domain of unknown function (DUF4407) APG17 PF04108.12 gi|292655413|ref|YP_003535310.1| - 0.00034 19.8 19.9 0.00073 18.8 9.9 2.0 1 1 0 2 2 2 1 Autophagy protein Apg17 DUF4618 PF15397.6 gi|292655413|ref|YP_003535310.1| - 0.00037 20.0 20.5 0.01 15.2 1.8 3.0 1 1 2 3 3 3 1 Domain of unknown function (DUF4618) ZapB PF06005.12 gi|292655413|ref|YP_003535310.1| - 0.00038 20.8 37.3 0.04 14.4 9.9 3.6 1 1 2 4 4 4 2 Cell division protein ZapB Golgin_A5 PF09787.9 gi|292655413|ref|YP_003535310.1| - 0.00041 19.9 29.5 0.011 15.2 17.9 2.2 1 1 1 2 2 2 2 Golgin subfamily A member 5 FUSC PF04632.12 gi|292655413|ref|YP_003535310.1| - 0.00047 18.9 11.2 0.00061 18.5 11.2 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family DUF4763 PF15960.5 gi|292655413|ref|YP_003535310.1| - 0.00058 19.2 23.2 0.052 12.8 3.6 3.0 1 1 2 3 3 3 2 Domain of unknown function (DUF4763) DLP_helical PF18709.1 gi|292655413|ref|YP_003535310.1| - 0.00059 19.1 20.7 0.21 10.8 1.7 3.0 1 1 2 3 3 3 2 Dynamin-like helical domain bZIP_1 PF00170.21 gi|292655413|ref|YP_003535310.1| - 0.00059 19.9 24.0 0.011 15.8 3.6 4.6 1 1 3 5 5 4 2 bZIP transcription factor TMF_TATA_bd PF12325.8 gi|292655413|ref|YP_003535310.1| - 0.0006 20.0 29.4 0.035 14.3 10.7 3.1 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding Seryl_tRNA_N PF02403.22 gi|292655413|ref|YP_003535310.1| - 0.00068 19.8 20.3 0.0042 17.3 7.4 2.4 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain DUF724 PF05266.14 gi|292655413|ref|YP_003535310.1| - 0.00068 19.5 17.8 0.0013 18.6 9.4 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF724) WXG100 PF06013.12 gi|292655413|ref|YP_003535310.1| - 0.00077 19.7 17.1 0.01 16.0 3.0 4.2 1 1 1 3 3 3 1 Proteins of 100 residues with WXG THOC7 PF05615.13 gi|292655413|ref|YP_003535310.1| - 0.00077 19.7 28.9 0.042 14.1 9.7 3.2 1 1 2 3 3 3 1 Tho complex subunit 7 FH2 PF02181.23 gi|292655413|ref|YP_003535310.1| - 0.00078 18.7 11.9 0.085 12.0 3.4 2.3 1 1 1 2 2 2 2 Formin Homology 2 Domain Jnk-SapK_ap_N PF09744.9 gi|292655413|ref|YP_003535310.1| - 0.00085 19.6 31.5 0.14 12.3 15.3 2.2 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 FlxA PF14282.6 gi|292655413|ref|YP_003535310.1| - 0.0011 19.0 4.8 0.0011 19.0 4.8 3.1 1 1 2 3 3 2 1 FlxA-like protein Tektin PF03148.14 gi|292655413|ref|YP_003535310.1| - 0.0012 17.7 24.9 0.47 9.1 24.9 2.8 1 1 0 1 1 1 1 Tektin family FapA PF03961.13 gi|292655413|ref|YP_003535310.1| - 0.0013 17.5 15.1 0.065 11.8 3.1 2.0 1 1 1 2 2 2 2 Flagellar Assembly Protein A ERM PF00769.19 gi|292655413|ref|YP_003535310.1| - 0.0014 18.5 27.9 0.0079 16.0 12.3 2.0 1 1 1 2 2 2 2 Ezrin/radixin/moesin family Fib_alpha PF08702.10 gi|292655413|ref|YP_003535310.1| - 0.0015 18.7 20.1 0.0031 17.7 11.5 2.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF2730 PF10805.8 gi|292655413|ref|YP_003535310.1| - 0.0016 18.5 14.2 0.014 15.5 2.0 3.2 1 1 3 4 4 4 2 Protein of unknown function (DUF2730) Nsp1_C PF05064.13 gi|292655413|ref|YP_003535310.1| - 0.0016 18.2 11.1 0.0016 18.2 11.1 2.3 1 1 1 2 2 2 1 Nsp1-like C-terminal region Prefoldin PF02996.17 gi|292655413|ref|YP_003535310.1| - 0.0017 18.2 22.4 0.84 9.6 0.5 4.5 1 1 4 5 5 5 0 Prefoldin subunit Tropomyosin PF00261.20 gi|292655413|ref|YP_003535310.1| - 0.0018 17.7 27.1 0.022 14.1 27.2 2.3 1 1 0 1 1 1 1 Tropomyosin DUF713 PF05218.14 gi|292655413|ref|YP_003535310.1| - 0.0022 17.8 8.3 0.041 13.6 1.7 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF713) Myosin_tail_1 PF01576.19 gi|292655413|ref|YP_003535310.1| - 0.0022 15.9 28.8 0.0051 14.7 28.8 1.4 1 1 0 1 1 1 1 Myosin tail DUF745 PF05335.13 gi|292655413|ref|YP_003535310.1| - 0.0026 17.5 17.8 0.017 14.9 6.7 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF745) Spc24 PF08286.11 gi|292655413|ref|YP_003535310.1| - 0.0029 17.8 34.4 0.38 11.0 8.1 4.0 1 1 3 4 4 4 2 Spc24 subunit of Ndc80 TMPIT PF07851.13 gi|292655413|ref|YP_003535310.1| - 0.003 16.9 15.3 0.2 10.8 5.3 2.2 1 1 1 2 2 2 2 TMPIT-like protein Lebercilin PF15619.6 gi|292655413|ref|YP_003535310.1| - 0.003 17.2 28.7 0.12 12.1 29.1 2.4 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease NPV_P10 PF05531.12 gi|292655413|ref|YP_003535310.1| - 0.0032 17.9 20.0 8.3 7.0 0.2 4.3 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF812 PF05667.11 gi|292655413|ref|YP_003535310.1| - 0.0033 16.4 25.2 0.053 12.4 12.3 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF812) DUF4600 PF15372.6 gi|292655413|ref|YP_003535310.1| - 0.0035 17.8 19.2 2 8.9 0.4 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4600) HAP1_N PF04849.13 gi|292655413|ref|YP_003535310.1| - 0.0039 16.4 29.8 1 8.5 29.6 2.8 1 1 1 2 2 2 0 HAP1 N-terminal conserved region RasGAP_C PF03836.15 gi|292655413|ref|YP_003535310.1| - 0.0039 17.3 16.9 0.28 11.3 2.4 3.8 1 1 3 4 4 4 1 RasGAP C-terminus CLZ PF16526.5 gi|292655413|ref|YP_003535310.1| - 0.0047 17.3 5.1 0.0047 17.3 5.1 3.9 1 1 2 3 3 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Swi5 PF07061.11 gi|292655413|ref|YP_003535310.1| - 0.0051 16.9 21.3 1.1 9.4 1.6 4.2 1 1 3 4 4 4 0 Swi5 V-SNARE_C PF12352.8 gi|292655413|ref|YP_003535310.1| - 0.0054 17.0 22.9 0.064 13.6 2.8 4.5 1 1 2 4 4 4 1 Snare region anchored in the vesicle membrane C-terminus YabA PF06156.13 gi|292655413|ref|YP_003535310.1| - 0.0056 17.3 21.0 0.48 11.1 9.6 3.1 1 1 1 2 2 2 1 Initiation control protein YabA Exonuc_VII_L PF02601.15 gi|292655413|ref|YP_003535310.1| - 0.0064 16.1 21.1 0.055 13.0 21.1 1.9 1 1 0 1 1 1 1 Exonuclease VII, large subunit YscO PF07321.12 gi|292655413|ref|YP_003535310.1| - 0.0065 16.4 26.5 0.43 10.5 6.6 2.7 1 1 2 3 3 3 2 Type III secretion protein YscO Rootletin PF15035.6 gi|292655413|ref|YP_003535310.1| - 0.0065 16.5 34.7 0.14 12.2 19.7 2.3 1 1 1 2 2 2 1 Ciliary rootlet component, centrosome cohesion DUF5082 PF16888.5 gi|292655413|ref|YP_003535310.1| - 0.0068 16.7 23.3 0.023 15.0 17.1 3.4 1 1 1 2 2 2 1 Domain of unknown function (DUF5082) COG5 PF10392.9 gi|292655413|ref|YP_003535310.1| - 0.0072 16.5 18.1 0.66 10.2 0.3 3.1 1 1 2 3 3 3 1 Golgi transport complex subunit 5 DUF2203 PF09969.9 gi|292655413|ref|YP_003535310.1| - 0.0074 17.0 14.1 0.014 16.1 3.4 2.5 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2203) HIP1_clath_bdg PF16515.5 gi|292655413|ref|YP_003535310.1| - 0.0079 16.8 17.0 0.0079 16.8 17.0 2.9 1 1 1 2 2 2 1 Clathrin-binding domain of Huntingtin-interacting protein 1 Syntaxin-6_N PF09177.11 gi|292655413|ref|YP_003535310.1| - 0.0086 16.6 28.2 1 9.9 12.5 3.1 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF3552 PF12072.8 gi|292655413|ref|YP_003535310.1| - 0.0089 15.5 33.4 0.019 14.4 15.3 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) zf-C4H2 PF10146.9 gi|292655413|ref|YP_003535310.1| - 0.0093 16.3 11.7 0.0093 16.3 11.7 2.0 1 1 1 2 2 2 1 Zinc finger-containing protein DUF2959 PF11172.8 gi|292655413|ref|YP_003535310.1| - 0.0097 16.1 12.7 1.6 8.8 5.3 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Rab_bind PF16704.5 gi|292655413|ref|YP_003535310.1| - 0.012 15.7 3.0 0.012 15.7 3.0 3.0 1 1 1 3 3 1 0 Rab binding domain Phage_GP20 PF06810.11 gi|292655413|ref|YP_003535310.1| - 0.012 15.4 5.6 0.012 15.4 5.6 3.3 1 1 2 3 3 3 0 Phage minor structural protein GP20 FmiP_Thoc5 PF09766.9 gi|292655413|ref|YP_003535310.1| - 0.012 14.9 22.4 0.013 14.8 12.2 2.5 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 Sec2p PF06428.11 gi|292655413|ref|YP_003535310.1| - 0.013 15.4 27.6 0.38 10.8 4.3 4.0 1 1 3 4 4 4 0 GDP/GTP exchange factor Sec2p DUF2968 PF11180.8 gi|292655413|ref|YP_003535310.1| - 0.014 15.1 7.1 0.014 15.1 7.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) WEMBL PF05701.11 gi|292655413|ref|YP_003535310.1| - 0.014 14.1 21.7 0.032 12.9 21.6 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light GrpE PF01025.19 gi|292655413|ref|YP_003535310.1| - 0.014 15.1 22.9 0.49 10.0 6.0 3.2 1 1 2 3 3 3 0 GrpE ABC_tran_CTD PF16326.5 gi|292655413|ref|YP_003535310.1| - 0.014 15.6 29.6 0.2 11.9 8.9 4.0 1 1 2 3 3 3 0 ABC transporter C-terminal domain DUF16 PF01519.16 gi|292655413|ref|YP_003535310.1| - 0.016 15.7 17.9 0.085 13.3 8.7 2.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 DegS PF05384.11 gi|292655413|ref|YP_003535310.1| - 0.017 14.6 24.5 0.067 12.7 16.2 2.9 1 1 1 2 2 2 0 Sensor protein DegS Taxilin PF09728.9 gi|292655413|ref|YP_003535310.1| - 0.017 14.3 18.6 0.031 13.5 17.0 1.8 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Cnn_1N PF07989.11 gi|292655413|ref|YP_003535310.1| - 0.018 15.2 26.3 0.62 10.3 5.0 3.4 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 MctB PF11382.8 gi|292655413|ref|YP_003535310.1| - 0.018 14.7 26.8 0.04 13.6 1.1 4.0 1 1 3 4 4 4 0 Copper transport outer membrane protein, MctB Sec34 PF04136.15 gi|292655413|ref|YP_003535310.1| - 0.02 14.8 7.1 0.02 14.8 7.1 2.5 1 1 1 2 2 2 0 Sec34-like family DUF4164 PF13747.6 gi|292655413|ref|YP_003535310.1| - 0.024 14.9 14.1 0.024 14.9 14.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) BST2 PF16716.5 gi|292655413|ref|YP_003535310.1| - 0.026 15.1 27.1 0.78 10.4 6.1 2.8 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 UPF0449 PF15136.6 gi|292655413|ref|YP_003535310.1| - 0.027 14.9 27.3 2.1 8.8 1.6 4.1 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 bZIP_2 PF07716.15 gi|292655413|ref|YP_003535310.1| - 0.028 14.5 31.4 0.092 12.8 0.8 5.4 2 2 3 6 6 6 0 Basic region leucine zipper MCPsignal PF00015.21 gi|292655413|ref|YP_003535310.1| - 0.029 14.2 6.8 0.23 11.3 5.2 2.3 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Nup54 PF13874.6 gi|292655413|ref|YP_003535310.1| - 0.03 14.4 20.1 1.3 9.1 19.8 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Tup_N PF08581.10 gi|292655413|ref|YP_003535310.1| - 0.032 14.5 21.2 0.61 10.4 1.7 3.2 1 1 1 3 3 3 0 Tup N-terminal Prominin PF05478.11 gi|292655413|ref|YP_003535310.1| - 0.035 12.1 16.4 0.17 9.8 16.5 1.9 1 1 0 1 1 1 0 Prominin kleA_kleC PF17383.2 gi|292655413|ref|YP_003535310.1| - 0.036 14.4 19.2 1.4 9.3 1.6 3.8 1 1 2 3 3 3 0 Uncharacterized KorC regulated protein A DUF948 PF06103.11 gi|292655413|ref|YP_003535310.1| - 0.039 14.2 13.4 12 6.2 0.1 3.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TssO PF17561.2 gi|292655413|ref|YP_003535310.1| - 0.039 14.0 5.7 5 7.2 0.8 3.1 1 1 1 2 2 2 0 Type VI secretion system, TssO DUF4446 PF14584.6 gi|292655413|ref|YP_003535310.1| - 0.042 13.8 13.7 1.7 8.6 1.8 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) SlyX PF04102.12 gi|292655413|ref|YP_003535310.1| - 0.043 14.4 29.2 0.05 14.2 5.5 4.2 1 1 1 2 2 1 0 SlyX CCDC144C PF14915.6 gi|292655413|ref|YP_003535310.1| - 0.043 12.9 26.8 0.4 9.8 20.1 2.4 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region OrfB_IS605 PF01385.19 gi|292655413|ref|YP_003535310.1| - 0.05 13.8 5.8 0.17 12.2 0.3 2.8 1 1 2 3 3 2 0 Probable transposase FAM76 PF16046.5 gi|292655413|ref|YP_003535310.1| - 0.05 12.9 13.0 0.073 12.4 13.0 1.2 1 0 0 1 1 1 0 FAM76 protein DUF2205 PF10224.9 gi|292655413|ref|YP_003535310.1| - 0.053 13.5 2.5 0.053 13.5 2.5 3.8 1 1 2 3 3 2 0 Short coiled-coil protein HOOK PF05622.12 gi|292655413|ref|YP_003535310.1| - 0.056 11.6 31.0 0.15 10.2 20.9 2.0 1 1 1 2 2 2 0 HOOK protein Sec8_exocyst PF04048.14 gi|292655413|ref|YP_003535310.1| - 0.057 13.3 17.0 1.3 8.9 7.7 3.1 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain HAUS-augmin3 PF14932.6 gi|292655413|ref|YP_003535310.1| - 0.059 13.0 25.0 0.015 14.9 14.1 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Cluap1 PF10234.9 gi|292655413|ref|YP_003535310.1| - 0.059 12.8 23.3 0.24 10.8 5.5 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 CC2-LZ PF16516.5 gi|292655413|ref|YP_003535310.1| - 0.062 13.7 19.5 4.1 7.8 1.3 3.8 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Snapin_Pallidin PF14712.6 gi|292655413|ref|YP_003535310.1| - 0.063 13.7 24.4 0.65 10.4 8.7 3.5 1 1 2 3 3 3 0 Snapin/Pallidin Spectrin PF00435.21 gi|292655413|ref|YP_003535310.1| - 0.064 13.8 22.5 0.17 12.4 13.2 2.4 1 1 1 2 2 2 0 Spectrin repeat Phage_HK97_TLTM PF06120.11 gi|292655413|ref|YP_003535310.1| - 0.067 12.4 14.6 0.31 10.2 8.6 2.2 1 1 1 2 2 2 0 Tail length tape measure protein DUF4140 PF13600.6 gi|292655413|ref|YP_003535310.1| - 0.068 13.6 29.8 1.3 9.5 2.9 4.3 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) BORCS7 PF16088.5 gi|292655413|ref|YP_003535310.1| - 0.069 13.4 12.8 0.24 11.7 2.8 3.2 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 7 Med14 PF08638.11 gi|292655413|ref|YP_003535310.1| - 0.07 12.5 3.2 0.06 12.8 0.9 1.8 1 1 1 2 2 2 0 Mediator complex subunit MED14 CEP63 PF17045.5 gi|292655413|ref|YP_003535310.1| - 0.074 12.9 26.3 1.5 8.7 26.9 2.1 1 1 0 1 1 1 0 Centrosomal protein of 63 kDa Alanine_zipper PF11839.8 gi|292655413|ref|YP_003535310.1| - 0.077 13.4 4.6 2.6 8.5 0.1 3.7 1 1 3 4 4 4 0 Alanine-zipper, major outer membrane lipoprotein TACC_C PF05010.14 gi|292655413|ref|YP_003535310.1| - 0.082 12.7 17.8 0.61 9.8 18.0 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal XhlA PF10779.9 gi|292655413|ref|YP_003535310.1| - 0.082 13.1 26.4 0.065 13.4 7.0 4.3 1 1 4 5 5 5 0 Haemolysin XhlA ArAE_2_N PF10337.9 gi|292655413|ref|YP_003535310.1| - 0.084 11.9 0.9 0.11 11.5 0.9 1.3 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal DUF3086 PF11285.8 gi|292655413|ref|YP_003535310.1| - 0.089 11.9 0.1 0.089 11.9 0.1 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF3086) Ax_dynein_light PF10211.9 gi|292655413|ref|YP_003535310.1| - 0.1 12.5 24.0 0.77 9.7 12.6 3.5 1 1 3 4 4 4 0 Axonemal dynein light chain T7SS_ESX_EspC PF10824.8 gi|292655413|ref|YP_003535310.1| - 0.1 13.0 7.1 1.7 9.1 1.5 3.2 1 1 2 3 3 3 0 Excreted virulence factor EspC, type VII ESX diderm She9_MDM33 PF05546.11 gi|292655413|ref|YP_003535310.1| - 0.11 12.2 14.4 4.7 7.0 1.1 3.1 1 1 1 2 2 2 0 She9 / Mdm33 family DUF641 PF04859.12 gi|292655413|ref|YP_003535310.1| - 0.12 12.8 19.7 0.37 11.1 3.0 3.0 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) YscO-like PF16789.5 gi|292655413|ref|YP_003535310.1| - 0.12 12.4 15.8 0.042 13.9 10.7 2.2 1 1 1 2 2 2 0 YscO-like protein LPP PF04728.13 gi|292655413|ref|YP_003535310.1| - 0.12 12.7 0.1 0.12 12.7 0.1 4.7 1 1 3 4 4 4 0 Lipoprotein leucine-zipper DUF4795 PF16043.5 gi|292655413|ref|YP_003535310.1| - 0.12 11.9 22.1 2.9 7.5 14.8 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4854 PF16146.5 gi|292655413|ref|YP_003535310.1| - 0.13 12.6 13.3 1.1 9.6 0.4 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4854) T2SSM PF04612.12 gi|292655413|ref|YP_003535310.1| - 0.13 12.3 10.7 0.25 11.4 0.7 3.0 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M COX16 PF14138.6 gi|292655413|ref|YP_003535310.1| - 0.14 12.7 4.0 4.8 7.8 4.0 2.5 1 1 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 BAR_3 PF16746.5 gi|292655413|ref|YP_003535310.1| - 0.14 11.9 11.3 0.077 12.7 6.7 2.3 1 1 1 2 2 2 0 BAR domain of APPL family ApoO PF09769.9 gi|292655413|ref|YP_003535310.1| - 0.14 12.1 7.2 5.4 7.0 0.2 3.0 1 1 1 2 2 2 0 Apolipoprotein O Oleosin PF01277.17 gi|292655413|ref|YP_003535310.1| - 0.14 11.9 0.6 6.2 6.6 0.0 3.0 1 1 2 3 3 2 0 Oleosin COG6 PF06419.11 gi|292655413|ref|YP_003535310.1| - 0.15 10.3 17.7 0.21 9.8 3.8 2.3 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 SHE3 PF17078.5 gi|292655413|ref|YP_003535310.1| - 0.17 11.5 28.6 0.024 14.4 17.6 2.1 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 KELK PF15796.5 gi|292655413|ref|YP_003535310.1| - 0.18 12.3 24.8 0.29 11.6 7.5 3.1 1 1 2 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Occludin_ELL PF07303.13 gi|292655413|ref|YP_003535310.1| - 0.18 12.5 11.5 0.65 10.8 3.2 3.1 1 1 1 2 2 2 0 Occludin homology domain T3SSipB PF16535.5 gi|292655413|ref|YP_003535310.1| - 0.19 12.2 15.2 1.4 9.4 2.5 2.6 1 1 1 2 2 2 0 Type III cell invasion protein SipB BicD PF09730.9 gi|292655413|ref|YP_003535310.1| - 0.2 10.1 25.0 0.75 8.2 25.0 1.8 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D KLRAQ PF10205.9 gi|292655413|ref|YP_003535310.1| - 0.2 11.9 23.1 0.61 10.4 5.7 3.4 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein CCB1 PF12046.8 gi|292655413|ref|YP_003535310.1| - 0.2 11.0 2.5 0.31 10.4 0.1 2.2 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B DivIVA PF05103.13 gi|292655413|ref|YP_003535310.1| - 0.23 11.5 21.8 2.9 8.0 2.6 3.1 1 1 1 2 2 2 0 DivIVA protein FliD_C PF07195.12 gi|292655413|ref|YP_003535310.1| - 0.24 10.8 17.4 4.3 6.7 8.9 3.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus CASP_C PF08172.12 gi|292655413|ref|YP_003535310.1| - 0.24 10.7 30.8 0.37 10.1 5.2 3.3 1 1 1 2 2 2 0 CASP C terminal LapA_dom PF06305.11 gi|292655413|ref|YP_003535310.1| - 0.25 11.2 11.3 0.58 10.0 0.0 4.8 3 2 1 4 4 3 0 Lipopolysaccharide assembly protein A domain Fmp27_WPPW PF10359.9 gi|292655413|ref|YP_003535310.1| - 0.28 10.0 23.8 0.15 10.9 5.5 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain OmpH PF03938.14 gi|292655413|ref|YP_003535310.1| - 0.28 11.5 22.1 2.9 8.2 8.3 3.0 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) RE_AlwI PF09491.10 gi|292655413|ref|YP_003535310.1| - 0.29 9.9 7.0 0.32 9.8 7.0 1.1 1 0 0 1 1 1 0 AlwI restriction endonuclease Baculo_gp64 PF03273.13 gi|292655413|ref|YP_003535310.1| - 0.29 9.9 1.7 0.39 9.5 0.9 1.5 1 1 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family Mei5 PF10376.9 gi|292655413|ref|YP_003535310.1| - 0.3 10.9 22.2 0.61 9.9 22.2 1.5 1 1 0 1 1 1 0 Double-strand recombination repair protein DUF5320 PF17253.2 gi|292655413|ref|YP_003535310.1| - 0.3 12.2 14.7 7.3 7.7 0.1 4.0 2 1 2 4 4 4 0 Family of unknown function (DUF5320) Transcrip_act PF04949.13 gi|292655413|ref|YP_003535310.1| - 0.31 10.9 14.4 0.18 11.7 8.1 2.1 1 1 1 2 2 2 0 Transcriptional activator FAP206 PF12018.8 gi|292655413|ref|YP_003535310.1| - 0.31 10.5 13.4 0.027 14.0 5.3 2.0 1 1 1 2 2 2 0 Domain of unknown function OEP PF02321.18 gi|292655413|ref|YP_003535310.1| - 0.32 10.8 27.0 0.28 11.0 13.5 2.3 1 1 1 2 2 2 0 Outer membrane efflux protein LXG PF04740.12 gi|292655413|ref|YP_003535310.1| - 0.32 10.7 20.1 2.5 7.8 9.3 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF4472 PF14739.6 gi|292655413|ref|YP_003535310.1| - 0.32 11.7 22.4 0.31 11.8 8.8 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) Fzo_mitofusin PF04799.13 gi|292655413|ref|YP_003535310.1| - 0.34 10.4 17.9 0.44 10.1 2.5 3.2 1 1 1 2 2 2 0 fzo-like conserved region DASH_Spc19 PF08287.11 gi|292655413|ref|YP_003535310.1| - 0.34 10.8 26.5 1.1 9.2 0.4 2.6 2 1 0 2 2 2 0 Spc19 GTP-bdg_M PF16360.5 gi|292655413|ref|YP_003535310.1| - 0.35 11.5 17.8 5.3 7.7 3.4 4.1 1 1 1 3 3 3 0 GTP-binding GTPase Middle Region E2R135 PF11570.8 gi|292655413|ref|YP_003535310.1| - 0.36 11.1 9.2 0.31 11.3 1.4 2.7 1 1 2 3 3 3 0 Coiled-coil receptor-binding R-domain of colicin E2 PI3K_P85_iSH2 PF16454.5 gi|292655413|ref|YP_003535310.1| - 0.39 10.3 23.9 0.15 11.7 14.0 2.9 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain RPW8 PF05659.11 gi|292655413|ref|YP_003535310.1| - 0.4 10.4 10.8 4.7 6.9 1.9 3.4 1 1 2 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 JIP_LZII PF16471.5 gi|292655413|ref|YP_003535310.1| - 0.45 10.7 30.4 0.67 10.2 10.0 3.7 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II Cep57_CLD_2 PF14197.6 gi|292655413|ref|YP_003535310.1| - 0.5 10.5 42.0 0.088 12.9 12.4 3.4 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 YkyA PF10368.9 gi|292655413|ref|YP_003535310.1| - 0.5 10.0 20.5 5.6 6.6 20.0 2.2 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein CtIP_N PF10482.9 gi|292655413|ref|YP_003535310.1| - 0.52 10.4 22.0 3 7.9 1.5 3.2 1 1 1 3 3 3 0 Tumour-suppressor protein CtIP N-terminal domain SseC PF04888.12 gi|292655413|ref|YP_003535310.1| - 0.58 9.7 8.9 0.34 10.5 0.4 2.6 1 1 1 3 3 3 0 Secretion system effector C (SseC) like family FemAB PF02388.16 gi|292655413|ref|YP_003535310.1| - 0.6 8.9 17.4 0.23 10.3 3.5 2.2 1 1 1 2 2 2 0 FemAB family CENP-H PF05837.12 gi|292655413|ref|YP_003535310.1| - 0.64 10.5 27.3 0.48 10.8 7.2 2.8 1 1 2 3 3 3 0 Centromere protein H (CENP-H) IFP_35_N PF07334.13 gi|292655413|ref|YP_003535310.1| - 0.66 10.1 0.0 0.66 10.1 0.0 3.9 3 1 1 4 4 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus PRKG1_interact PF15898.5 gi|292655413|ref|YP_003535310.1| - 0.69 10.8 28.4 5.8 7.9 1.1 3.4 1 1 1 2 2 1 0 cGMP-dependent protein kinase interacting domain HR1 PF02185.16 gi|292655413|ref|YP_003535310.1| - 0.76 9.9 31.3 0.15 12.2 6.1 3.9 1 1 2 4 4 4 0 Hr1 repeat LMBR1 PF04791.16 gi|292655413|ref|YP_003535310.1| - 0.79 8.6 15.3 3.9 6.3 15.3 1.8 1 1 0 1 1 1 0 LMBR1-like membrane protein Troponin PF00992.20 gi|292655413|ref|YP_003535310.1| - 0.84 9.9 24.3 0.55 10.5 7.8 3.0 1 1 2 3 3 3 0 Troponin Mce4_CUP1 PF11887.8 gi|292655413|ref|YP_003535310.1| - 0.88 9.0 8.9 1.3 8.5 6.1 1.9 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative KfrA_N PF11740.8 gi|292655413|ref|YP_003535310.1| - 0.88 10.3 31.2 1.8 9.3 3.9 4.2 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term SKA1 PF07160.12 gi|292655413|ref|YP_003535310.1| - 0.91 9.3 13.8 12 5.7 6.3 2.7 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Tho2 PF11262.8 gi|292655413|ref|YP_003535310.1| - 0.91 8.7 17.7 7.8e+02 -1.0 17.7 2.4 1 1 0 1 1 0 0 Transcription factor/nuclear export subunit protein 2 Spc29 PF17082.5 gi|292655413|ref|YP_003535310.1| - 0.93 9.3 19.1 38 4.0 19.0 2.7 1 1 0 1 1 1 0 Spindle Pole Component 29 Bacillus_HBL PF05791.11 gi|292655413|ref|YP_003535310.1| - 0.96 9.3 15.8 2.6 7.8 5.7 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Dzip-like_N PF13815.6 gi|292655413|ref|YP_003535310.1| - 1 9.3 21.9 1.2 9.1 2.5 3.3 1 1 2 3 3 3 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Med9 PF07544.13 gi|292655413|ref|YP_003535310.1| - 1.1 9.4 23.0 3.7 7.7 3.4 4.1 1 1 3 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 ZapD PF07072.11 gi|292655413|ref|YP_003535310.1| - 1.1 9.0 17.0 0.6 9.8 3.9 2.7 1 1 1 2 2 2 0 Cell division protein DUF1043 PF06295.12 gi|292655413|ref|YP_003535310.1| - 1.1 9.3 16.0 1.4e+02 2.5 16.0 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) HalX PF08663.10 gi|292655413|ref|YP_003535310.1| - 1.1 9.6 41.9 5.6 7.4 9.3 4.6 1 1 2 3 3 2 0 HalX domain DUF4199 PF13858.6 gi|292655413|ref|YP_003535310.1| - 1.2 9.5 2.7 2.1 8.7 0.2 2.3 1 1 1 2 2 1 0 Protein of unknown function (DUF4199) TMCO5 PF14992.6 gi|292655413|ref|YP_003535310.1| - 1.3 8.5 25.6 2 7.9 16.3 2.1 1 1 1 2 2 2 0 TMCO5 family PMEI PF04043.15 gi|292655413|ref|YP_003535310.1| - 1.3 9.3 11.6 43 4.4 11.6 2.2 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor DUF2353 PF09789.9 gi|292655413|ref|YP_003535310.1| - 1.4 8.2 24.8 7.9 5.7 24.4 1.9 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF4062 PF13271.6 gi|292655413|ref|YP_003535310.1| - 1.5 9.3 6.1 5.5 7.4 0.3 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4062) CemA PF03040.14 gi|292655413|ref|YP_003535310.1| - 1.5 8.7 3.9 0.67 9.8 0.3 1.8 1 1 1 2 2 1 0 CemA family Rx_N PF18052.1 gi|292655413|ref|YP_003535310.1| - 1.5 9.1 17.0 5.9 7.2 3.9 3.1 1 1 2 3 3 3 0 Rx N-terminal domain Fungal_TACC PF12709.7 gi|292655413|ref|YP_003535310.1| - 1.6 9.2 20.2 2.4 8.7 2.4 4.0 1 1 2 4 4 4 0 Fungal Transforming acidic coiled-coil (TACC) proteins YvrJ PF12841.7 gi|292655413|ref|YP_003535310.1| - 1.6 8.3 6.8 8.3 6.0 0.1 3.8 3 1 0 3 3 3 0 YvrJ protein family FliD_N PF02465.18 gi|292655413|ref|YP_003535310.1| - 1.7 9.4 17.1 1.6e+04 -3.4 17.1 3.5 1 1 0 1 1 0 0 Flagellar hook-associated protein 2 N-terminus DUF3810 PF12725.7 gi|292655413|ref|YP_003535310.1| - 1.8 7.9 9.2 2.6 7.3 2.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) Val_tRNA-synt_C PF10458.9 gi|292655413|ref|YP_003535310.1| - 1.9 8.9 16.2 1.5 9.2 0.2 4.5 2 2 2 4 4 3 0 Valyl tRNA synthetase tRNA binding arm HAUS6_N PF14661.6 gi|292655413|ref|YP_003535310.1| - 1.9 8.0 17.9 4.9 6.7 2.3 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus TarH PF02203.15 gi|292655413|ref|YP_003535310.1| - 2.1 8.2 18.1 0.11 12.5 1.7 2.7 1 1 1 2 2 2 0 Tar ligand binding domain homologue Gp58 PF07902.11 gi|292655413|ref|YP_003535310.1| - 2.3 6.4 16.1 3.2 5.9 1.4 2.1 1 1 1 2 2 2 0 gp58-like protein Csm1_N PF18504.1 gi|292655413|ref|YP_003535310.1| - 2.5 8.5 26.7 3.5 8.1 2.1 4.4 1 1 3 4 4 3 0 Csm1 N-terminal domain Phlebovirus_NSM PF07246.11 gi|292655413|ref|YP_003535310.1| - 2.6 7.3 15.1 9.4 5.5 8.1 2.8 1 1 0 2 2 2 0 Phlebovirus nonstructural protein NS-M DUF3958 PF13125.6 gi|292655413|ref|YP_003535310.1| - 2.7 8.3 31.3 0.33 11.2 3.5 4.2 1 1 2 3 3 2 0 Protein of unknown function (DUF3958) DUF4686 PF15742.5 gi|292655413|ref|YP_003535310.1| - 2.7 7.0 30.8 4.8 6.2 12.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4686) Rho_Binding PF08912.11 gi|292655413|ref|YP_003535310.1| - 2.9 8.8 27.1 6.8 7.6 1.8 4.0 1 1 2 3 3 3 0 Rho Binding MCC-bdg_PDZ PF10506.9 gi|292655413|ref|YP_003535310.1| - 2.9 8.0 21.3 0.077 13.0 2.8 4.3 2 2 2 4 4 4 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Halogen_Hydrol PF10112.9 gi|292655413|ref|YP_003535310.1| - 2.9 7.9 13.6 1.5e+03 -1.0 13.6 2.7 1 1 0 1 1 0 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Corona_S2 PF01601.16 gi|292655413|ref|YP_003535310.1| - 3 6.2 7.0 1.8 6.9 0.7 2.0 1 1 0 2 2 2 0 Coronavirus S2 glycoprotein Lectin_N PF03954.14 gi|292655413|ref|YP_003535310.1| - 3.2 7.5 21.6 1.8e+04 -5.2 21.6 3.0 1 1 0 1 1 0 0 Hepatic lectin, N-terminal domain Herpes_UL6 PF01763.16 gi|292655413|ref|YP_003535310.1| - 3.2 6.1 16.8 3 6.3 8.7 2.1 1 1 1 2 2 2 0 Herpesvirus UL6 like Phage_GPO PF05929.11 gi|292655413|ref|YP_003535310.1| - 3.3 7.2 18.5 16 5.0 9.2 2.5 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase HALZ PF02183.18 gi|292655413|ref|YP_003535310.1| - 3.3 8.0 28.5 0.097 12.9 4.3 4.6 3 2 2 5 5 4 0 Homeobox associated leucine zipper DUF1843 PF08898.10 gi|292655413|ref|YP_003535310.1| - 3.5 8.2 5.0 2.6 8.6 0.2 2.9 2 1 0 3 3 1 0 Domain of unknown function (DUF1843) Cauli_AT PF03233.13 gi|292655413|ref|YP_003535310.1| - 3.6 7.5 10.7 5.1 7.0 8.3 1.9 1 1 1 2 2 2 0 Aphid transmission protein Phage_Mu_Gam PF07352.12 gi|292655413|ref|YP_003535310.1| - 3.8 7.4 14.4 0.75 9.7 4.4 3.1 1 1 2 3 3 2 0 Bacteriophage Mu Gam like protein HisKA_3 PF07730.13 gi|292655413|ref|YP_003535310.1| - 3.9 8.1 17.0 4 8.0 0.8 3.6 1 1 2 3 3 3 0 Histidine kinase DUF4349 PF14257.6 gi|292655413|ref|YP_003535310.1| - 4.1 6.8 33.5 2.6 7.5 22.0 3.0 1 1 1 3 3 2 0 Domain of unknown function (DUF4349) TSC22 PF01166.18 gi|292655413|ref|YP_003535310.1| - 4.1 7.8 23.2 5 7.5 3.2 4.8 2 2 3 5 5 4 0 TSC-22/dip/bun family Baculo_p24 PF05073.12 gi|292655413|ref|YP_003535310.1| - 4.8 6.9 13.4 1.2e+02 2.4 13.4 2.6 1 1 0 1 1 1 0 Baculovirus P24 capsid protein YojJ PF10372.9 gi|292655413|ref|YP_003535310.1| - 4.9 7.3 11.0 20 5.4 0.7 3.8 1 1 3 4 4 4 0 Bacterial membrane-spanning protein N-terminus TBCA PF02970.16 gi|292655413|ref|YP_003535310.1| - 4.9 7.6 20.0 3 8.2 5.4 3.2 1 1 1 2 2 2 0 Tubulin binding cofactor A Sec20 PF03908.13 gi|292655413|ref|YP_003535310.1| - 5.2 7.0 16.5 17 5.4 4.8 3.4 1 1 2 3 3 3 0 Sec20 RmuC PF02646.16 gi|292655413|ref|YP_003535310.1| - 5.6 6.0 24.2 1.4 8.0 3.4 3.0 1 1 2 3 3 3 0 RmuC family zf-ZPR1 PF03367.13 gi|292655413|ref|YP_003535310.1| - 5.7 6.8 10.7 27 4.6 10.7 2.1 1 1 0 1 1 1 0 ZPR1 zinc-finger domain PHTB1_C PF14728.6 gi|292655413|ref|YP_003535310.1| - 5.9 5.9 12.5 3.3 6.7 8.0 2.0 1 1 1 2 2 2 0 PTHB1 C-terminus Tweety PF04906.13 gi|292655413|ref|YP_003535310.1| - 6 5.4 8.6 0.97 8.0 3.8 1.9 1 1 1 2 2 2 0 Tweety DUF3037 PF11236.8 gi|292655413|ref|YP_003535310.1| - 6 7.3 6.9 21 5.6 0.6 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3037) Ly49 PF08391.10 gi|292655413|ref|YP_003535310.1| - 6.5 7.1 11.4 2.8 8.3 3.4 2.7 1 1 2 3 3 2 0 Ly49-like protein, N-terminal region HMMR_C PF15908.5 gi|292655413|ref|YP_003535310.1| - 6.9 6.9 13.1 10 6.4 0.6 3.0 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor C-terminal V_ATPase_I PF01496.19 gi|292655413|ref|YP_003535310.1| - 7 4.4 17.8 59 1.4 17.8 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family PDGLE PF13190.6 gi|292655413|ref|YP_003535310.1| - 7.6 6.5 6.3 33 4.5 0.3 3.1 1 1 1 2 2 2 0 PDGLE domain Tmemb_cc2 PF10267.9 gi|292655413|ref|YP_003535310.1| - 8.1 5.5 24.1 28 3.7 24.1 1.7 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF2333 PF10095.9 gi|292655413|ref|YP_003535310.1| - 8.2 5.3 13.1 1.8 7.5 9.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2333) EMP24_GP25L PF01105.24 gi|292655413|ref|YP_003535310.1| - 8.7 6.2 24.9 0.2 11.5 0.9 3.7 1 1 2 3 3 3 0 emp24/gp25L/p24 family/GOLD PCRF PF03462.18 gi|292655413|ref|YP_003535310.1| - 9.3 6.1 20.0 6.9 6.5 7.7 2.1 1 1 1 2 2 2 0 PCRF domain bZIP_Maf PF03131.17 gi|292655413|ref|YP_003535310.1| - 9.7 6.8 27.6 3.8 8.1 5.2 3.9 1 1 3 4 4 4 0 bZIP Maf transcription factor VWA PF00092.28 gi|292655414|ref|YP_003535311.1| - 3.1e-22 79.7 0.4 4.2e-17 63.0 0.0 2.8 3 0 0 3 3 3 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|292655414|ref|YP_003535311.1| - 1.4e-13 51.4 0.4 2.5e-12 47.4 0.0 2.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|292655414|ref|YP_003535311.1| - 9e-10 38.7 0.0 4.3e-09 36.5 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|292655414|ref|YP_003535311.1| - 2.8e-06 26.9 3.6 8.1e-05 22.1 0.0 3.0 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|292655414|ref|YP_003535311.1| - 0.00031 20.9 1.7 0.00031 20.9 1.7 4.2 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 3) DUF4131 PF13567.6 gi|292655414|ref|YP_003535311.1| - 0.19 11.4 6.7 0.19 11.4 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) LytR_C PF13399.6 gi|292655414|ref|YP_003535311.1| - 0.28 12.2 5.8 9.4 7.3 0.1 3.9 3 0 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator BatA PF07584.11 gi|292655415|ref|YP_003535312.1| - 2.1e-11 44.0 8.6 2.1e-11 44.0 8.6 1.9 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|292655415|ref|YP_003535312.1| - 7.8e-07 29.7 0.6 1.8e-06 28.5 0.6 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF58 PF01882.18 gi|292655415|ref|YP_003535312.1| - 0.054 13.8 0.1 0.25 11.7 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function DUF58 Na_H_antiporter PF03553.14 gi|292655416|ref|YP_003535313.1| - 2.8e-60 204.1 37.4 1e-53 182.6 21.2 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family bPH_2 PF03703.14 gi|292655417|ref|YP_003535314.1| - 1.7e-14 53.7 0.2 2.9e-14 53.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|292655418|ref|YP_003535315.1| - 2.3e-14 53.3 0.0 3.5e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain AsnC_trans_reg PF01037.21 gi|292655419|ref|YP_003535316.1| - 1.8e-17 63.0 1.4 2.4e-17 62.7 0.2 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain DprA_WH PF17782.1 gi|292655419|ref|YP_003535316.1| - 5.4e-08 32.8 0.9 1.1e-07 31.9 0.9 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|292655419|ref|YP_003535316.1| - 8.5e-07 28.4 0.2 1.7e-06 27.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|292655419|ref|YP_003535316.1| - 6.5e-06 25.9 4.4 7.6e-06 25.7 1.3 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|292655419|ref|YP_003535316.1| - 0.00025 20.9 0.1 0.00055 19.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|292655419|ref|YP_003535316.1| - 0.0014 18.5 0.0 0.0031 17.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|292655419|ref|YP_003535316.1| - 0.0075 15.8 0.4 0.012 15.2 0.4 1.3 1 0 0 1 1 1 1 winged helix-turn-helix RPA_C PF08784.11 gi|292655419|ref|YP_003535316.1| - 0.011 16.4 0.0 0.025 15.2 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal TrmB PF01978.19 gi|292655419|ref|YP_003535316.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|292655419|ref|YP_003535316.1| - 0.025 14.5 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family FeoC PF09012.10 gi|292655419|ref|YP_003535316.1| - 0.028 14.5 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF5633 PF18656.1 gi|292655419|ref|YP_003535316.1| - 0.049 13.5 0.2 0.09 12.7 0.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5633) HTH_15 PF12324.8 gi|292655419|ref|YP_003535316.1| - 0.062 13.3 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.7 gi|292655419|ref|YP_003535316.1| - 0.079 13.0 0.3 0.16 12.1 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|292655419|ref|YP_003535316.1| - 0.13 12.0 0.0 5.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655419|ref|YP_003535316.1| - 0.14 12.0 0.6 0.3 10.9 0.1 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|292655419|ref|YP_003535316.1| - 0.16 11.9 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|292655419|ref|YP_003535316.1| - 0.2 11.9 0.3 0.62 10.3 0.1 2.0 2 0 0 2 2 2 0 AsnC-like ligand binding domain Aminotran_1_2 PF00155.21 gi|292655420|ref|YP_003535317.1| - 8.1e-70 235.8 0.0 9.1e-70 235.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|292655420|ref|YP_003535317.1| - 0.00014 21.3 0.0 0.00023 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|292655420|ref|YP_003535317.1| - 0.00041 19.4 0.0 0.00065 18.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|292655420|ref|YP_003535317.1| - 0.0095 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Usp PF00582.26 gi|292655421|ref|YP_003535318.1| - 2.5e-32 112.3 2.9 2.8e-32 112.1 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family GFRP PF06399.13 gi|292655421|ref|YP_003535318.1| - 0.094 12.6 0.0 1.2 9.0 0.0 2.1 1 1 1 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) DUF5559 PF17714.1 gi|292655424|ref|YP_003535321.1| - 0.045 13.6 0.0 0.045 13.6 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5559) STI1 PF17830.1 gi|292655424|ref|YP_003535321.1| - 0.061 13.3 0.3 0.073 13.0 0.3 1.1 1 0 0 1 1 1 0 STI1 domain HalX PF08663.10 gi|292655425|ref|YP_003535322.1| - 3e-23 81.9 7.7 3e-23 81.9 7.7 2.1 2 1 1 3 3 3 1 HalX domain Response_reg PF00072.24 gi|292655425|ref|YP_003535322.1| - 4.4e-19 68.7 0.0 7.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain FTA4 PF13093.6 gi|292655425|ref|YP_003535322.1| - 0.042 13.7 0.0 0.042 13.7 0.0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Regulator_TrmB PF11495.8 gi|292655426|ref|YP_003535323.1| - 3.7e-67 225.9 0.4 4.9e-67 225.5 0.4 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|292655426|ref|YP_003535323.1| - 3.3e-15 55.7 0.0 6.9e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292655426|ref|YP_003535323.1| - 0.00021 21.1 0.1 0.00053 19.8 0.1 1.7 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|292655426|ref|YP_003535323.1| - 0.00061 19.7 0.0 0.002 18.0 0.0 1.9 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|292655426|ref|YP_003535323.1| - 0.031 14.1 0.1 0.091 12.6 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|292655426|ref|YP_003535323.1| - 0.054 13.1 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292655426|ref|YP_003535323.1| - 0.057 13.4 0.0 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|292655426|ref|YP_003535323.1| - 0.1 13.1 0.0 0.37 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|292655426|ref|YP_003535323.1| - 0.28 11.3 2.5 0.43 10.7 0.0 2.5 3 0 0 3 3 3 0 DprA winged helix domain IMPDH PF00478.25 gi|292655427|ref|YP_003535324.1| - 2.6e-142 473.9 9.2 2.9e-142 473.8 9.2 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|292655427|ref|YP_003535324.1| - 9.3e-22 77.2 12.5 1.8e-11 44.3 0.8 3.5 4 0 0 4 4 4 2 CBS domain NMO PF03060.15 gi|292655427|ref|YP_003535324.1| - 1e-11 44.8 1.5 2.9e-07 30.2 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|292655427|ref|YP_003535324.1| - 2.8e-09 36.5 4.6 4.9e-09 35.7 4.6 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|292655427|ref|YP_003535324.1| - 0.00015 21.0 3.7 0.0003 20.1 3.7 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|292655427|ref|YP_003535324.1| - 0.00015 21.1 1.2 0.00031 20.1 1.2 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|292655427|ref|YP_003535324.1| - 0.00033 20.2 2.3 0.00078 19.0 2.3 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|292655427|ref|YP_003535324.1| - 0.00036 19.9 6.9 0.00037 19.9 1.3 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|292655427|ref|YP_003535324.1| - 0.0014 17.7 0.1 0.0032 16.6 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) UPF0047 PF01894.17 gi|292655430|ref|YP_003535327.1| - 2.2e-34 118.0 0.0 2.6e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DZR PF12773.7 gi|292655431|ref|YP_003535328.1| - 0.014 15.4 0.3 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|292655431|ref|YP_003535328.1| - 0.018 15.2 2.7 0.57 10.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.11 gi|292655431|ref|YP_003535328.1| - 0.022 14.7 2.6 0.025 14.5 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_UBZ PF18439.1 gi|292655431|ref|YP_003535328.1| - 0.054 13.1 2.4 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|292655431|ref|YP_003535328.1| - 0.061 13.4 1.0 0.88 9.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Elf1 PF05129.13 gi|292655431|ref|YP_003535328.1| - 0.068 13.2 0.6 0.11 12.5 0.6 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DiS_P_DiS PF06750.13 gi|292655431|ref|YP_003535328.1| - 0.094 12.8 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-ribbon_3 PF13248.6 gi|292655431|ref|YP_003535328.1| - 0.14 11.6 1.9 0.48 9.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292655431|ref|YP_003535328.1| - 0.18 11.7 1.5 0.42 10.6 1.6 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|292655431|ref|YP_003535328.1| - 0.21 11.9 2.3 0.6 10.5 2.3 1.7 1 1 0 1 1 1 0 C1 domain zf-C2H2_6 PF13912.6 gi|292655431|ref|YP_003535328.1| - 1.9 8.6 3.7 10 6.2 0.6 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger eIF_4G1 PF12152.8 gi|292655433|ref|YP_003535330.1| - 0.056 13.6 0.1 0.08 13.1 0.1 1.3 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 4G1 DHFR_1 PF00186.19 gi|292655434|ref|YP_003535331.1| - 3.3e-37 127.7 0.0 3.9e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase MFS_1 PF07690.16 gi|292655435|ref|YP_003535332.1| - 6.3e-55 186.5 48.9 1.1e-28 100.2 15.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|292655435|ref|YP_003535332.1| - 3.1e-12 46.1 21.5 5.8e-09 35.3 4.7 2.5 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|292655435|ref|YP_003535332.1| - 3.4e-12 45.9 12.8 5.9e-12 45.1 9.6 2.5 1 1 1 2 2 2 1 MFS_1 like family MFS_3 PF05977.13 gi|292655435|ref|YP_003535332.1| - 2.4e-05 22.9 22.9 0.0099 14.3 10.2 2.6 2 1 0 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|292655435|ref|YP_003535332.1| - 2.6e-05 23.7 26.1 0.00085 18.7 12.8 2.4 1 1 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB TRI12 PF06609.13 gi|292655435|ref|YP_003535332.1| - 1.8 6.9 12.3 0.047 12.1 1.8 2.6 2 1 1 3 3 3 0 Fungal trichothecene efflux pump (TRI12) Glycos_transf_1 PF00534.20 gi|292655436|ref|YP_003535333.1| - 3.1e-36 124.5 0.0 1.4e-35 122.4 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|292655436|ref|YP_003535333.1| - 9.2e-28 97.3 0.1 3.7e-26 92.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|292655436|ref|YP_003535333.1| - 2.9e-11 43.6 0.2 2.1e-10 40.9 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292655436|ref|YP_003535333.1| - 4.9e-09 36.4 2.8 4.2e-08 33.4 2.8 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|292655436|ref|YP_003535333.1| - 1.7e-07 31.8 9.8 1.7e-07 31.8 9.8 2.8 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain DUF630 PF04783.12 gi|292655436|ref|YP_003535333.1| - 2.3 8.4 7.5 1.7 8.8 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF630) PTPS PF01242.19 gi|292655437|ref|YP_003535334.1| - 3.9e-21 75.3 0.0 4.3e-21 75.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.26 gi|292655438|ref|YP_003535335.1| - 8.5e-11 41.9 0.0 1.5e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|292655438|ref|YP_003535335.1| - 7.3e-05 22.3 0.0 0.00017 21.2 0.0 1.4 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|292655438|ref|YP_003535335.1| - 0.0013 19.8 0.0 0.0024 18.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|292655438|ref|YP_003535335.1| - 0.011 15.7 0.0 0.026 14.4 0.0 1.6 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain GCH_III PF05165.12 gi|292655439|ref|YP_003535336.1| - 1.1e-85 286.9 0.5 1.4e-85 286.5 0.5 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|292655439|ref|YP_003535336.1| - 5.6e-06 26.6 0.1 0.048 13.9 0.0 2.3 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|292655439|ref|YP_003535336.1| - 0.0036 17.6 0.0 0.093 13.1 0.0 2.2 2 0 0 2 2 2 1 minimal CRISPR polymerase domain ELF PF03317.13 gi|292655439|ref|YP_003535336.1| - 0.025 14.6 0.1 0.059 13.4 0.1 1.6 1 1 1 2 2 2 0 ELF protein VWA_CoxE PF05762.14 gi|292655439|ref|YP_003535336.1| - 0.038 13.4 0.2 0.48 9.8 0.0 2.1 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein Bap31 PF05529.12 gi|292655440|ref|YP_003535337.1| - 0.14 12.0 1.7 0.15 11.9 1.7 1.1 1 0 0 1 1 1 0 Bap31/Bap29 transmembrane region ABC2_membrane_2 PF12679.7 gi|292655440|ref|YP_003535337.1| - 0.37 10.0 6.9 0.42 9.8 6.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein TMEM43 PF07787.12 gi|292655440|ref|YP_003535337.1| - 2.1 7.7 4.0 2.2 7.6 4.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 DUF677 PF05055.12 gi|292655440|ref|YP_003535337.1| - 2.1 7.2 4.5 2.1 7.1 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Hydrolase_6 PF13344.6 gi|292655441|ref|YP_003535338.1| - 7.1e-24 83.8 0.0 1.1e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292655441|ref|YP_003535338.1| - 2.8e-23 81.8 0.7 9.2e-23 80.1 0.3 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|292655441|ref|YP_003535338.1| - 1.1e-10 42.1 0.8 1.5e-10 41.7 0.8 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|292655441|ref|YP_003535338.1| - 1.2e-05 25.4 0.1 0.001 19.2 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|292655441|ref|YP_003535338.1| - 0.0047 16.6 0.0 0.018 14.7 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase DJ-1_PfpI PF01965.24 gi|292655442|ref|YP_003535339.1| - 8.1e-54 181.9 0.0 9.3e-54 181.7 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|292655442|ref|YP_003535339.1| - 0.00013 21.8 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 gi|292655442|ref|YP_003535339.1| - 0.00043 20.0 0.0 0.00074 19.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|292655442|ref|YP_003535339.1| - 0.0015 18.2 0.0 0.004 16.8 0.0 1.7 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|292655442|ref|YP_003535339.1| - 0.048 13.3 0.1 0.37 10.5 0.0 2.1 1 1 1 2 2 2 0 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|292655442|ref|YP_003535339.1| - 0.051 12.6 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SnoaL_3 PF13474.6 gi|292655442|ref|YP_003535339.1| - 0.12 12.7 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 SnoaL-like domain Peptidase_C26 PF07722.13 gi|292655442|ref|YP_003535339.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 OsmC PF02566.19 gi|292655444|ref|YP_003535341.1| - 4.6e-14 52.7 0.0 5.9e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Lactamase_B_3 PF13483.6 gi|292655445|ref|YP_003535342.1| - 2.2e-19 69.9 0.2 2.9e-19 69.5 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|292655445|ref|YP_003535342.1| - 1.4e-16 60.7 2.0 2e-16 60.1 2.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292655445|ref|YP_003535342.1| - 1e-08 35.5 5.9 1e-08 35.5 5.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAA_hydrolase PF01557.18 gi|292655446|ref|YP_003535343.1| - 1.2e-67 227.8 0.1 1.4e-67 227.5 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF1648 PF07853.11 gi|292655447|ref|YP_003535344.1| - 1.4e-10 40.7 2.7 1.4e-10 40.7 2.7 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) Gluconate_2-dh3 PF13618.6 gi|292655448|ref|YP_003535345.1| - 4.3e-06 27.0 0.0 5.7e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DUF2059 PF09832.9 gi|292655448|ref|YP_003535345.1| - 0.16 12.0 0.0 0.64 10.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) GMC_oxred_C PF05199.13 gi|292655449|ref|YP_003535346.1| - 1.3e-22 80.9 0.4 4.4e-22 79.2 0.4 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|292655449|ref|YP_003535346.1| - 3.1e-14 53.0 0.0 7.6e-14 51.8 0.0 1.7 1 1 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|292655449|ref|YP_003535346.1| - 4.4e-09 35.9 1.6 0.00014 21.1 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|292655449|ref|YP_003535346.1| - 2.2e-07 30.8 11.0 2.1e-06 27.6 9.2 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|292655449|ref|YP_003535346.1| - 6.7e-07 28.9 4.6 6.5e-05 22.3 0.3 2.8 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|292655449|ref|YP_003535346.1| - 2.5e-05 24.4 0.2 9.5e-05 22.6 0.2 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|292655449|ref|YP_003535346.1| - 5.9e-05 22.3 0.5 0.00011 21.4 0.5 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|292655449|ref|YP_003535346.1| - 6.6e-05 22.3 0.2 0.00087 18.6 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292655449|ref|YP_003535346.1| - 0.00091 18.0 2.2 0.0024 16.7 0.9 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|292655449|ref|YP_003535346.1| - 0.002 17.5 0.5 0.0061 16.0 0.4 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase ApbA PF02558.16 gi|292655449|ref|YP_003535346.1| - 0.013 15.2 0.3 0.044 13.4 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|292655449|ref|YP_003535346.1| - 0.016 14.5 0.1 0.028 13.7 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|292655449|ref|YP_003535346.1| - 0.029 13.6 0.2 0.12 11.6 0.1 2.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|292655449|ref|YP_003535346.1| - 0.035 14.7 0.3 0.077 13.6 0.3 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain GIDA PF01134.22 gi|292655449|ref|YP_003535346.1| - 0.055 12.5 0.3 0.14 11.2 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|292655449|ref|YP_003535346.1| - 0.19 11.6 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aminotran_1_2 PF00155.21 gi|292655450|ref|YP_003535347.1| - 1.2e-70 238.6 0.0 1.3e-70 238.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|292655450|ref|YP_003535347.1| - 0.0072 15.2 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Allinase Aminotran_3 PF00202.21 gi|292655450|ref|YP_003535347.1| - 0.011 14.4 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III Acetyltransf_6 PF13480.7 gi|292655450|ref|YP_003535347.1| - 0.012 15.8 2.3 2.8 8.1 0.1 2.3 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Cys_Met_Meta_PP PF01053.20 gi|292655450|ref|YP_003535347.1| - 0.064 11.8 0.0 0.16 10.5 0.0 1.6 3 0 0 3 3 3 0 Cys/Met metabolism PLP-dependent enzyme Protoglobin PF11563.8 gi|292655450|ref|YP_003535347.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Protoglobin FTR PF01913.18 gi|292655450|ref|YP_003535347.1| - 0.17 11.9 0.1 0.33 10.9 0.1 1.4 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase Met_gamma_lyase PF06838.11 gi|292655450|ref|YP_003535347.1| - 0.21 10.0 0.0 0.32 9.5 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase AAA_18 PF13238.6 gi|292655451|ref|YP_003535348.1| - 2.6e-23 83.0 0.3 3.2e-23 82.7 0.3 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|292655451|ref|YP_003535348.1| - 8.9e-07 29.4 0.3 0.0054 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|292655451|ref|YP_003535348.1| - 1e-06 29.0 1.8 0.0033 17.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|292655451|ref|YP_003535348.1| - 0.00017 21.9 3.5 0.00039 20.7 2.4 2.2 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|292655451|ref|YP_003535348.1| - 0.00035 21.0 0.0 0.00046 20.6 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|292655451|ref|YP_003535348.1| - 0.0014 18.5 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|292655451|ref|YP_003535348.1| - 0.0025 18.1 0.0 0.0047 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292655451|ref|YP_003535348.1| - 0.005 17.2 2.4 0.043 14.2 2.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain SKI PF01202.22 gi|292655451|ref|YP_003535348.1| - 0.0061 16.7 0.1 2.8 8.0 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase dNK PF01712.19 gi|292655451|ref|YP_003535348.1| - 0.0099 15.8 0.0 2.9 7.7 0.0 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase Zeta_toxin PF06414.12 gi|292655451|ref|YP_003535348.1| - 0.016 14.5 0.3 0.14 11.4 0.0 2.2 2 1 0 2 2 2 0 Zeta toxin ADK PF00406.22 gi|292655451|ref|YP_003535348.1| - 0.024 14.8 0.0 5.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase MeaB PF03308.16 gi|292655451|ref|YP_003535348.1| - 0.026 13.5 0.0 0.04 12.9 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|292655451|ref|YP_003535348.1| - 0.031 14.3 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_2 PF03668.15 gi|292655451|ref|YP_003535348.1| - 0.031 13.6 0.1 0.038 13.3 0.1 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family AAA_19 PF13245.6 gi|292655451|ref|YP_003535348.1| - 0.035 14.4 0.1 0.065 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|292655451|ref|YP_003535348.1| - 0.039 13.7 0.0 0.063 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|292655451|ref|YP_003535348.1| - 0.067 13.6 0.0 0.15 12.5 0.0 1.7 2 0 0 2 2 2 0 RNA helicase KTI12 PF08433.10 gi|292655451|ref|YP_003535348.1| - 0.069 12.6 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.18 gi|292655451|ref|YP_003535348.1| - 0.073 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|292655451|ref|YP_003535348.1| - 0.083 12.1 0.0 0.083 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|292655451|ref|YP_003535348.1| - 0.19 11.4 1.9 0.29 10.8 1.5 1.5 1 1 0 1 1 1 0 AAA domain CDP-OH_P_transf PF01066.21 gi|292655452|ref|YP_003535349.1| - 1.3e-08 35.5 0.4 1.3e-08 35.5 0.4 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DNA_processg_A PF02481.15 gi|292655452|ref|YP_003535349.1| - 0.13 11.5 0.4 0.24 10.6 0.4 1.4 1 0 0 1 1 1 0 DNA recombination-mediator protein A HATPase_c PF02518.26 gi|292655453|ref|YP_003535350.1| - 7.6e-16 58.6 0.0 1.4e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292655453|ref|YP_003535350.1| - 7.6e-13 48.7 3.0 5e-07 30.0 0.0 3.5 3 1 1 4 4 4 2 PAS fold PAS PF00989.25 gi|292655453|ref|YP_003535350.1| - 1.7e-08 34.5 0.0 0.0025 17.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|292655453|ref|YP_003535350.1| - 4.6e-07 29.7 0.5 0.00082 19.3 0.2 3.0 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 gi|292655453|ref|YP_003535350.1| - 1.5e-06 28.4 0.0 0.0011 19.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|292655453|ref|YP_003535350.1| - 8.7e-05 22.5 0.1 0.00024 21.1 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|292655453|ref|YP_003535350.1| - 0.00017 21.4 0.1 0.00034 20.5 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|292655453|ref|YP_003535350.1| - 0.00033 20.9 0.0 0.016 15.5 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|292655453|ref|YP_003535350.1| - 0.0021 17.9 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|292655453|ref|YP_003535350.1| - 0.0049 16.5 0.0 0.0094 15.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase Ribosomal_S6 PF01250.17 gi|292655453|ref|YP_003535350.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S6 HTH_3 PF01381.22 gi|292655454|ref|YP_003535351.1| - 1.6e-11 44.0 1.0 2.6e-11 43.4 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|292655454|ref|YP_003535351.1| - 7.8e-10 38.6 0.3 1.2e-09 38.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|292655454|ref|YP_003535351.1| - 1.2e-08 35.1 0.1 2.1e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|292655454|ref|YP_003535351.1| - 1.4e-06 28.1 0.4 2.2e-06 27.4 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|292655454|ref|YP_003535351.1| - 0.0026 17.7 0.1 0.0047 16.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|292655454|ref|YP_003535351.1| - 0.013 15.4 1.8 0.029 14.3 1.8 1.6 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Spt5_N PF11942.8 gi|292655454|ref|YP_003535351.1| - 0.17 12.9 3.6 0.25 12.3 1.3 2.2 2 0 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal TIM PF00121.18 gi|292655455|ref|YP_003535352.1| - 2.7e-07 30.2 0.0 3.7e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|292655455|ref|YP_003535352.1| - 0.00021 20.7 2.0 0.00021 20.7 2.0 1.9 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|292655455|ref|YP_003535352.1| - 0.0031 16.6 2.5 0.0031 16.6 2.5 1.8 2 1 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|292655455|ref|YP_003535352.1| - 0.01 15.0 0.0 0.016 14.4 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.6 gi|292655455|ref|YP_003535352.1| - 0.019 15.0 1.4 0.16 12.1 0.3 2.6 2 0 0 2 2 2 0 HAD-hyrolase-like NMO PF03060.15 gi|292655455|ref|YP_003535352.1| - 1.8 7.8 13.2 4.3 6.6 6.3 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase DUF87 PF01935.17 gi|292655456|ref|YP_003535353.1| - 5.7e-12 46.2 0.7 1.1e-11 45.3 0.0 1.8 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|292655456|ref|YP_003535353.1| - 0.00018 20.3 0.1 0.01 14.4 0.0 2.5 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) CbiA PF01656.23 gi|292655456|ref|YP_003535353.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Med4 PF10018.9 gi|292655456|ref|YP_003535353.1| - 0.0037 17.0 1.1 0.0037 17.0 1.1 1.6 2 0 0 2 2 2 1 Vitamin-D-receptor interacting Mediator subunit 4 AAA_10 PF12846.7 gi|292655456|ref|YP_003535353.1| - 0.0039 16.2 0.0 0.043 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain APS_kinase PF01583.20 gi|292655456|ref|YP_003535353.1| - 0.029 14.3 0.0 0.082 12.8 0.0 1.8 2 0 0 2 2 1 0 Adenylylsulphate kinase ResIII PF04851.15 gi|292655456|ref|YP_003535353.1| - 0.03 14.3 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Med9 PF07544.13 gi|292655456|ref|YP_003535353.1| - 0.033 14.3 2.7 0.064 13.3 2.7 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 TrwB_AAD_bind PF10412.9 gi|292655456|ref|YP_003535353.1| - 0.04 12.8 0.0 0.087 11.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|292655456|ref|YP_003535353.1| - 0.06 13.7 0.0 0.06 13.7 0.0 2.6 2 1 0 2 2 1 0 AAA ATPase domain DUF4407 PF14362.6 gi|292655456|ref|YP_003535353.1| - 0.079 12.3 1.1 0.13 11.6 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FtsK_SpoIIIE PF01580.18 gi|292655456|ref|YP_003535353.1| - 0.12 11.7 0.1 0.44 9.9 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF16 PF01519.16 gi|292655456|ref|YP_003535353.1| - 0.14 12.6 0.5 0.28 11.7 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 DivIC PF04977.15 gi|292655456|ref|YP_003535353.1| - 0.19 11.5 4.1 0.46 10.3 4.1 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF4200 PF13863.6 gi|292655456|ref|YP_003535353.1| - 0.23 11.8 5.0 0.52 10.7 5.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF724 PF05266.14 gi|292655456|ref|YP_003535353.1| - 0.38 10.5 1.8 0.61 9.9 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF641 PF04859.12 gi|292655456|ref|YP_003535353.1| - 0.41 11.0 3.1 2.2 8.6 3.1 2.1 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) DUF3391 PF11871.8 gi|292655456|ref|YP_003535353.1| - 0.42 11.1 2.4 1.1 9.8 2.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Atg14 PF10186.9 gi|292655456|ref|YP_003535353.1| - 0.43 9.6 1.4 0.64 9.0 1.4 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Pox_A_type_inc PF04508.12 gi|292655456|ref|YP_003535353.1| - 0.71 9.8 5.5 0.83 9.6 3.9 2.0 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat IMS PF00817.20 gi|292655457|ref|YP_003535354.1| - 7.1e-38 130.0 0.0 1.5e-37 128.9 0.0 1.5 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.8 gi|292655457|ref|YP_003535354.1| - 2.8e-14 53.8 0.0 2.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|292655457|ref|YP_003535354.1| - 4.4e-07 29.9 0.0 8.6e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|292655457|ref|YP_003535354.1| - 3.1e-05 24.5 0.2 9.4e-05 22.9 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|292655457|ref|YP_003535354.1| - 0.00034 20.4 0.3 0.0015 18.3 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|292655457|ref|YP_003535354.1| - 0.078 13.2 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus HTH_24 PF13412.6 gi|292655458|ref|YP_003535355.1| - 1.3e-13 50.3 0.1 2.9e-13 49.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|292655458|ref|YP_003535355.1| - 2.2e-10 40.3 0.1 3.6e-10 39.7 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|292655458|ref|YP_003535355.1| - 4.2e-09 36.1 0.1 9.1e-09 35.0 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|292655458|ref|YP_003535355.1| - 1.6e-06 28.0 0.0 3.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|292655458|ref|YP_003535355.1| - 3.3e-06 26.9 0.0 2.2e-05 24.3 0.0 2.1 2 1 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|292655458|ref|YP_003535355.1| - 3.6e-06 27.1 0.1 1.4e-05 25.2 0.0 1.9 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|292655458|ref|YP_003535355.1| - 4.5e-06 26.5 0.0 1.3e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|292655458|ref|YP_003535355.1| - 6.9e-06 25.7 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|292655458|ref|YP_003535355.1| - 7.8e-06 25.9 0.0 1.8e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|292655458|ref|YP_003535355.1| - 2.6e-05 23.9 0.0 5.7e-05 22.8 0.0 1.5 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|292655458|ref|YP_003535355.1| - 3.4e-05 23.6 0.0 6.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|292655458|ref|YP_003535355.1| - 0.00012 22.0 0.0 0.00024 21.0 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655458|ref|YP_003535355.1| - 0.00022 21.0 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|292655458|ref|YP_003535355.1| - 0.00022 21.5 0.0 0.00091 19.5 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.6 gi|292655458|ref|YP_003535355.1| - 0.00028 20.8 0.0 0.00052 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|292655458|ref|YP_003535355.1| - 0.0004 20.3 0.0 0.004 17.1 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|292655458|ref|YP_003535355.1| - 0.00054 19.8 0.1 0.0012 18.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|292655458|ref|YP_003535355.1| - 0.0083 15.9 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.21 gi|292655458|ref|YP_003535355.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|292655458|ref|YP_003535355.1| - 0.026 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Sigma70_r4_2 PF08281.12 gi|292655458|ref|YP_003535355.1| - 0.036 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 gi|292655458|ref|YP_003535355.1| - 0.072 13.5 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein DUF2250 PF10007.9 gi|292655458|ref|YP_003535355.1| - 0.1 12.7 0.1 0.37 10.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|292655458|ref|YP_003535355.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|292655458|ref|YP_003535355.1| - 0.13 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TPP_enzyme_C PF02775.21 gi|292655459|ref|YP_003535356.1| - 1.4e-30 106.1 0.2 2e-30 105.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|292655459|ref|YP_003535356.1| - 0.12 12.5 1.6 0.35 11.0 1.6 1.8 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR PF01558.18 gi|292655460|ref|YP_003535357.1| - 1.9e-48 164.9 0.0 3.4e-48 164.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|292655460|ref|YP_003535357.1| - 2.1e-48 165.1 0.1 4.2e-48 164.1 0.1 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|292655460|ref|YP_003535357.1| - 1.8e-10 41.1 0.0 3.5e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|292655460|ref|YP_003535357.1| - 0.00019 21.3 0.0 0.00054 19.8 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|292655460|ref|YP_003535357.1| - 0.001 18.7 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Chorismate_synt PF01264.21 gi|292655461|ref|YP_003535358.1| - 1e-117 392.5 0.0 1.2e-117 392.3 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase SCP-1 PF05483.12 gi|292655461|ref|YP_003535358.1| - 0.22 9.5 0.4 0.3 9.0 0.4 1.0 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) EPSP_synthase PF00275.20 gi|292655463|ref|YP_003535360.1| - 4.4e-106 355.1 0.1 5.3e-106 354.8 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Peptidase_M24 PF00557.24 gi|292655464|ref|YP_003535361.1| - 2.1e-47 161.5 0.2 2.7e-47 161.2 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|292655464|ref|YP_003535361.1| - 4.6e-05 24.1 0.0 0.00012 22.8 0.0 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain PepSY PF03413.19 gi|292655464|ref|YP_003535361.1| - 0.14 12.7 0.1 0.14 12.7 0.1 2.3 4 0 0 4 4 4 0 Peptidase propeptide and YPEB domain DUF3020 PF11223.8 gi|292655465|ref|YP_003535362.1| - 0.85 10.2 2.1 7.7 7.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3020) adh_short PF00106.25 gi|292655466|ref|YP_003535363.1| - 6.9e-34 117.0 0.0 9.4e-34 116.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292655466|ref|YP_003535363.1| - 1.7e-32 112.8 0.0 2.4e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|292655466|ref|YP_003535363.1| - 9.6e-09 35.4 0.0 1.4e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|292655466|ref|YP_003535363.1| - 0.045 13.2 0.1 0.064 12.7 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family CoA_binding_2 PF13380.6 gi|292655466|ref|YP_003535363.1| - 0.16 12.5 0.0 0.48 10.9 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain THF_DHG_CYH_C PF02882.19 gi|292655466|ref|YP_003535363.1| - 0.18 11.1 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PDH PF02153.17 gi|292655467|ref|YP_003535364.1| - 5.2e-14 51.9 0.2 2e-12 46.7 0.2 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|292655467|ref|YP_003535364.1| - 0.038 14.6 0.4 0.15 12.7 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Methyltransf_12 PF08242.12 gi|292655468|ref|YP_003535365.1| - 3.1e-08 34.2 0.5 1.9e-07 31.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655468|ref|YP_003535365.1| - 1.3e-07 31.6 0.0 2.1e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655468|ref|YP_003535365.1| - 2.4e-06 28.1 0.3 5.9e-06 26.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Rsm22 PF09243.10 gi|292655468|ref|YP_003535365.1| - 2.6e-06 26.9 0.0 3.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.6 gi|292655468|ref|YP_003535365.1| - 6.2e-05 23.6 0.0 0.00014 22.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655468|ref|YP_003535365.1| - 0.00013 21.8 0.0 0.00039 20.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PALP PF00291.25 gi|292655468|ref|YP_003535365.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme GidB PF02527.15 gi|292655468|ref|YP_003535365.1| - 0.13 11.5 0.0 0.3 10.4 0.0 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G SurE PF01975.17 gi|292655469|ref|YP_003535366.1| - 7.9e-45 153.0 0.1 1e-44 152.7 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE TMEM43 PF07787.12 gi|292655471|ref|YP_003535368.1| - 0.046 13.1 0.3 0.053 12.9 0.3 1.0 1 0 0 1 1 1 0 Transmembrane protein 43 Phage_holin_3_6 PF07332.11 gi|292655471|ref|YP_003535368.1| - 1.1 9.3 11.0 1.4 9.0 11.0 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3040 PF11239.8 gi|292655471|ref|YP_003535368.1| - 2.9 8.2 12.0 9.3 6.6 12.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Halogen_Hydrol PF10112.9 gi|292655471|ref|YP_003535368.1| - 3.9 7.4 5.8 4.4 7.3 5.8 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Antibiotic_NAT PF02522.14 gi|292655472|ref|YP_003535369.1| - 1.2e-81 273.8 0.0 1.4e-81 273.5 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase OsmC PF02566.19 gi|292655473|ref|YP_003535370.1| - 5.6e-18 65.3 0.0 7.5e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein LysE PF01810.18 gi|292655474|ref|YP_003535371.1| - 8.4e-18 64.5 3.2 1e-17 64.3 3.2 1.0 1 0 0 1 1 1 1 LysE type translocator CM_2 PF01817.21 gi|292655476|ref|YP_003535373.1| - 1.3e-15 57.5 3.1 1.6e-15 57.2 3.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II NPFF PF15085.6 gi|292655476|ref|YP_003535373.1| - 0.07 13.5 0.2 0.12 12.7 0.2 1.4 1 0 0 1 1 1 0 Neuropeptide FF GHMP_kinases_N PF00288.26 gi|292655477|ref|YP_003535374.1| - 4.4e-11 42.8 3.1 4.4e-11 42.8 3.1 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|292655477|ref|YP_003535374.1| - 0.012 16.0 0.0 0.03 14.7 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases C terminal KTSC PF13619.6 gi|292655478|ref|YP_003535375.1| - 0.17 11.7 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 KTSC domain Repressor_Mnt PF11423.8 gi|292655479|ref|YP_003535376.1| - 4.5 7.2 6.7 1.2 9.0 2.4 2.1 2 0 0 2 2 2 0 Regulatory protein Mnt Zn-ribbon_8 PF09723.10 gi|292655480|ref|YP_003535377.1| - 0.0059 16.7 0.7 0.0079 16.3 0.7 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|292655480|ref|YP_003535377.1| - 0.015 15.1 1.4 0.026 14.3 1.4 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_5 PF13719.6 gi|292655480|ref|YP_003535377.1| - 0.06 13.1 0.4 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|292655480|ref|YP_003535377.1| - 0.073 13.6 0.1 0.13 12.8 0.0 1.5 1 1 0 1 1 1 0 Zinc finger, C2H2 type AAA PF00004.29 gi|292655481|ref|YP_003535378.1| - 1.8e-94 313.1 0.0 1.8e-46 157.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292655481|ref|YP_003535378.1| - 1.6e-26 91.8 6.1 1.7e-13 50.1 0.2 2.9 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|292655481|ref|YP_003535378.1| - 6.8e-22 77.5 1.9 3.1e-21 75.3 0.7 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|292655481|ref|YP_003535378.1| - 1.9e-15 57.0 0.0 9.7e-07 28.7 0.0 3.4 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|292655481|ref|YP_003535378.1| - 5.4e-14 52.7 0.0 1.7e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|292655481|ref|YP_003535378.1| - 7.3e-14 52.1 0.2 4.9e-06 26.8 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|292655481|ref|YP_003535378.1| - 5e-13 49.8 3.8 2.9e-05 24.5 0.1 4.0 3 2 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|292655481|ref|YP_003535378.1| - 1.8e-12 47.4 0.1 0.00018 21.6 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|292655481|ref|YP_003535378.1| - 2.2e-10 40.3 0.0 0.00013 21.3 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|292655481|ref|YP_003535378.1| - 2.4e-10 40.8 0.3 0.0015 18.9 0.1 3.8 3 2 0 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|292655481|ref|YP_003535378.1| - 3.4e-09 36.8 0.0 0.00068 19.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|292655481|ref|YP_003535378.1| - 6.9e-08 32.2 0.2 1.6e-07 31.0 0.2 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_18 PF13238.6 gi|292655481|ref|YP_003535378.1| - 8.2e-08 32.9 0.0 0.0087 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|292655481|ref|YP_003535378.1| - 1.6e-07 31.7 0.0 0.0061 16.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|292655481|ref|YP_003535378.1| - 3.5e-07 29.8 0.5 0.012 15.0 0.2 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|292655481|ref|YP_003535378.1| - 4.1e-07 29.9 0.0 0.013 15.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|292655481|ref|YP_003535378.1| - 1.1e-06 28.9 0.0 0.026 14.9 0.0 2.9 3 0 0 3 3 2 2 RNA helicase TsaE PF02367.17 gi|292655481|ref|YP_003535378.1| - 1.9e-06 27.9 0.0 0.025 14.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|292655481|ref|YP_003535378.1| - 2.1e-06 27.6 0.0 0.038 13.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|292655481|ref|YP_003535378.1| - 5.3e-06 25.9 0.5 0.11 11.7 0.0 3.3 3 0 0 3 3 3 2 Zeta toxin Sigma54_activat PF00158.26 gi|292655481|ref|YP_003535378.1| - 1.1e-05 25.2 0.0 0.3 10.8 0.0 3.2 4 0 0 4 4 2 2 Sigma-54 interaction domain AAA_11 PF13086.6 gi|292655481|ref|YP_003535378.1| - 1.3e-05 25.1 0.0 0.16 11.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|292655481|ref|YP_003535378.1| - 1.9e-05 24.5 0.2 0.29 10.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|292655481|ref|YP_003535378.1| - 3e-05 24.0 2.0 0.086 12.8 0.1 3.6 4 0 0 4 4 3 1 NACHT domain ABC_tran PF00005.27 gi|292655481|ref|YP_003535378.1| - 3.3e-05 24.4 0.0 0.18 12.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_7 PF12775.7 gi|292655481|ref|YP_003535378.1| - 3.5e-05 23.4 0.0 0.023 14.2 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|292655481|ref|YP_003535378.1| - 0.0001 21.5 0.0 0.41 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 T2SSE PF00437.20 gi|292655481|ref|YP_003535378.1| - 0.00022 20.4 0.8 1.1 8.2 0.1 3.3 3 0 0 3 3 3 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|292655481|ref|YP_003535378.1| - 0.00022 20.6 0.0 0.16 11.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|292655481|ref|YP_003535378.1| - 0.00022 21.0 0.0 0.6 9.8 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|292655481|ref|YP_003535378.1| - 0.00028 21.3 0.0 1 9.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|292655481|ref|YP_003535378.1| - 0.00029 20.1 0.0 0.4 9.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.16 gi|292655481|ref|YP_003535378.1| - 0.00031 20.3 0.8 0.83 9.1 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.6 gi|292655481|ref|YP_003535378.1| - 0.00056 19.5 3.3 0.27 10.8 0.2 3.5 2 2 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|292655481|ref|YP_003535378.1| - 0.00059 20.3 0.0 2 8.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 gi|292655481|ref|YP_003535378.1| - 0.0006 19.9 0.0 1.9 8.6 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|292655481|ref|YP_003535378.1| - 0.00071 19.4 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|292655481|ref|YP_003535378.1| - 0.0011 18.9 0.0 1.3 8.9 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Torsin PF06309.11 gi|292655481|ref|YP_003535378.1| - 0.0013 18.9 0.0 2.7 8.1 0.0 2.5 2 0 0 2 2 2 2 Torsin CPT PF07931.12 gi|292655481|ref|YP_003535378.1| - 0.0015 18.4 0.0 2.3 8.0 0.0 2.8 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ATPase PF06745.13 gi|292655481|ref|YP_003535378.1| - 0.0029 17.0 0.0 0.85 8.9 0.0 2.5 2 0 0 2 2 2 1 KaiC Cytidylate_kin PF02224.18 gi|292655481|ref|YP_003535378.1| - 0.0039 17.0 0.1 4.1 7.1 0.0 2.8 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|292655481|ref|YP_003535378.1| - 0.0042 16.0 0.0 0.73 8.6 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase TniB PF05621.11 gi|292655481|ref|YP_003535378.1| - 0.0054 16.2 0.0 3.4 7.0 0.0 3.1 2 1 1 3 3 3 1 Bacterial TniB protein DUF815 PF05673.13 gi|292655481|ref|YP_003535378.1| - 0.0056 15.9 0.0 1.3 8.2 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF815) ResIII PF04851.15 gi|292655481|ref|YP_003535378.1| - 0.0082 16.2 0.0 3.7 7.5 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Hydin_ADK PF17213.3 gi|292655481|ref|YP_003535378.1| - 0.012 15.9 0.1 1.9 8.7 0.0 2.5 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain NTPase_1 PF03266.15 gi|292655481|ref|YP_003535378.1| - 0.012 15.6 0.0 1.9 8.4 0.0 2.8 2 0 0 2 2 2 0 NTPase SKI PF01202.22 gi|292655481|ref|YP_003535378.1| - 0.021 14.9 0.0 4.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase ATPase_2 PF01637.18 gi|292655481|ref|YP_003535378.1| - 0.11 12.4 0.0 26 4.6 0.0 3.0 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|292655481|ref|YP_003535378.1| - 0.12 12.2 0.0 18 5.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein DAP3 PF10236.9 gi|292655481|ref|YP_003535378.1| - 0.19 10.9 0.0 3.6 6.7 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MazE_antitoxin PF04014.18 gi|292655481|ref|YP_003535378.1| - 0.27 11.2 1.0 11 6.1 0.1 3.2 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Methyltransf_25 PF13649.6 gi|292655483|ref|YP_003535380.1| - 8.1e-09 36.1 0.1 1.5e-08 35.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655483|ref|YP_003535380.1| - 6.7e-08 33.1 0.1 1.1e-07 32.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655483|ref|YP_003535380.1| - 8e-08 32.2 0.0 1.1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655483|ref|YP_003535380.1| - 1.3e-06 28.4 0.0 1.7e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292655483|ref|YP_003535380.1| - 0.00014 22.5 0.0 0.00024 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|292655483|ref|YP_003535380.1| - 0.00077 18.9 0.1 0.00093 18.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|292655483|ref|YP_003535380.1| - 0.00098 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain ADH_zinc_N PF00107.26 gi|292655483|ref|YP_003535380.1| - 0.055 13.5 0.1 0.085 12.8 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_9 PF08003.11 gi|292655483|ref|YP_003535380.1| - 0.077 11.9 0.0 0.096 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 gi|292655483|ref|YP_003535380.1| - 0.086 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|292655483|ref|YP_003535380.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase cIII PF08134.11 gi|292655484|ref|YP_003535381.1| - 0.011 15.5 1.8 0.14 12.0 0.0 2.8 3 0 0 3 3 3 0 cIII protein family SH3_14 PF18343.1 gi|292655484|ref|YP_003535381.1| - 0.05 13.7 0.1 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 Dda helicase SH3 domain HTH_20 PF12840.7 gi|292655485|ref|YP_003535382.1| - 3.9e-12 46.0 0.2 6.2e-12 45.4 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292655485|ref|YP_003535382.1| - 3.5e-08 33.2 0.1 6.3e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292655485|ref|YP_003535382.1| - 3e-07 30.2 0.0 4.3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|292655485|ref|YP_003535382.1| - 2.3e-06 27.4 0.1 1e-05 25.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|292655485|ref|YP_003535382.1| - 1.7e-05 24.3 0.0 2.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292655485|ref|YP_003535382.1| - 3.2e-05 23.7 0.0 4.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|292655485|ref|YP_003535382.1| - 0.00014 22.3 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|292655485|ref|YP_003535382.1| - 0.00049 19.9 0.0 0.00061 19.6 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit B-block_TFIIIC PF04182.12 gi|292655485|ref|YP_003535382.1| - 0.0013 18.8 0.0 0.0032 17.6 0.0 1.6 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC DUF2513 PF10711.9 gi|292655485|ref|YP_003535382.1| - 0.002 18.4 0.0 0.0026 18.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) Fe_dep_repress PF01325.19 gi|292655485|ref|YP_003535382.1| - 0.0031 17.7 0.0 0.005 17.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|292655485|ref|YP_003535382.1| - 0.0044 16.8 1.6 0.02 14.7 0.6 2.4 2 1 0 2 2 2 1 PucR C-terminal helix-turn-helix domain RP-C PF03428.13 gi|292655485|ref|YP_003535382.1| - 0.005 16.5 0.0 0.0064 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_10 PF04967.12 gi|292655485|ref|YP_003535382.1| - 0.0051 16.6 0.1 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain PadR PF03551.14 gi|292655485|ref|YP_003535382.1| - 0.0074 16.2 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family GntR PF00392.21 gi|292655485|ref|YP_003535382.1| - 0.0078 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|292655485|ref|YP_003535382.1| - 0.012 15.4 0.1 0.022 14.6 0.1 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|292655485|ref|YP_003535382.1| - 0.012 15.7 0.3 0.023 14.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.6 gi|292655485|ref|YP_003535382.1| - 0.028 14.6 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|292655485|ref|YP_003535382.1| - 0.078 12.8 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|292655485|ref|YP_003535382.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DEAD_assoc PF08494.11 gi|292655487|ref|YP_003535384.1| - 2.3e-33 115.6 0.2 5.6e-33 114.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|292655487|ref|YP_003535384.1| - 5.4e-29 101.2 0.0 7.5e-28 97.5 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|292655487|ref|YP_003535384.1| - 5.2e-22 78.3 0.0 1.7e-20 73.4 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|292655487|ref|YP_003535384.1| - 2e-10 40.9 0.0 4.9e-10 39.7 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|292655487|ref|YP_003535384.1| - 8.4e-06 26.2 0.0 0.00048 20.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|292655487|ref|YP_003535384.1| - 0.001 17.9 0.0 0.0017 17.2 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain HypA PF01155.19 gi|292655487|ref|YP_003535384.1| - 0.16 12.0 0.1 0.42 10.7 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|292655487|ref|YP_003535384.1| - 0.21 11.9 1.1 5.5 7.3 1.1 2.7 1 1 0 1 1 1 0 AAA domain DUF4231 PF14015.6 gi|292655488|ref|YP_003535385.1| - 0.12 12.8 0.4 0.19 12.2 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3482 PF11981.8 gi|292655488|ref|YP_003535385.1| - 0.99 8.7 7.1 1.2 8.5 7.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) HemY_N PF07219.13 gi|292655489|ref|YP_003535386.1| - 0.0012 19.0 1.8 0.0012 19.0 1.8 1.5 1 1 1 2 2 2 1 HemY protein N-terminus CbtB PF09489.10 gi|292655489|ref|YP_003535386.1| - 0.18 11.9 1.9 0.76 9.9 0.1 2.2 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) DUF3040 PF11239.8 gi|292655489|ref|YP_003535386.1| - 0.24 11.7 4.0 8.8 6.7 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Metallophos_2 PF12850.7 gi|292655490|ref|YP_003535387.1| - 6.3e-07 29.7 0.3 8.5e-07 29.3 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292655490|ref|YP_003535387.1| - 1.4e-05 25.7 1.2 3.2e-05 24.5 1.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|292655492|ref|YP_003535389.1| - 0.0002 21.2 4.7 2.3 8.3 0.2 3.9 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Glycos_transf_1 PF00534.20 gi|292655494|ref|YP_003535391.1| - 6.1e-27 94.2 0.0 1.2e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|292655494|ref|YP_003535391.1| - 2e-24 86.5 0.0 3.2e-24 85.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292655494|ref|YP_003535391.1| - 7.4e-17 61.9 0.0 1.5e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|292655494|ref|YP_003535391.1| - 1e-14 55.3 0.0 1.9e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|292655494|ref|YP_003535391.1| - 0.0001 22.1 0.0 0.12 12.0 0.0 2.7 1 1 0 2 2 2 2 Starch synthase catalytic domain RibD_C PF01872.17 gi|292655495|ref|YP_003535392.1| - 1.4e-48 165.4 0.1 1.5e-48 165.3 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Thioredoxin PF00085.20 gi|292655496|ref|YP_003535393.1| - 1.4e-26 92.4 0.0 1.6e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|292655496|ref|YP_003535393.1| - 1.5e-08 35.0 0.2 6.7e-07 29.7 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|292655496|ref|YP_003535393.1| - 0.00011 22.2 0.2 0.00017 21.6 0.2 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|292655496|ref|YP_003535393.1| - 0.00015 21.9 0.1 0.00032 20.8 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|292655496|ref|YP_003535393.1| - 0.00062 20.0 0.0 0.0024 18.2 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|292655496|ref|YP_003535393.1| - 0.0015 18.3 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|292655496|ref|YP_003535393.1| - 0.0045 17.2 0.1 0.65 10.1 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|292655496|ref|YP_003535393.1| - 0.012 15.8 0.1 0.021 15.0 0.1 1.5 1 1 0 1 1 1 0 Glutaredoxin AhpC-TSA PF00578.21 gi|292655496|ref|YP_003535393.1| - 0.015 15.2 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family OST3_OST6 PF04756.13 gi|292655496|ref|YP_003535393.1| - 0.022 14.1 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|292655496|ref|YP_003535393.1| - 0.027 14.4 0.3 0.067 13.2 0.3 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DIM1 PF02966.16 gi|292655496|ref|YP_003535393.1| - 0.048 13.4 0.2 0.14 12.0 0.2 1.7 1 1 0 1 1 1 0 Mitosis protein DIM1 TraF PF13728.6 gi|292655496|ref|YP_003535393.1| - 0.063 13.1 0.0 0.071 12.9 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Sigma70_r3 PF04539.16 gi|292655496|ref|YP_003535393.1| - 0.085 13.0 2.2 1.1 9.4 0.3 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 Thioredoxin_5 PF13743.6 gi|292655496|ref|YP_003535393.1| - 0.093 12.4 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin DUF836 PF05768.14 gi|292655496|ref|YP_003535393.1| - 0.11 13.0 0.1 0.15 12.5 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) P34-Arc PF04045.14 gi|292655496|ref|YP_003535393.1| - 0.16 11.7 0.1 0.21 11.3 0.1 1.1 1 0 0 1 1 1 0 Arp2/3 complex, 34 kD subunit p34-Arc NifU PF01106.17 gi|292655497|ref|YP_003535394.1| - 2.6e-11 43.5 0.0 3.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain SBDS PF01172.18 gi|292655498|ref|YP_003535395.1| - 2.4e-21 75.6 0.0 3.5e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|292655498|ref|YP_003535395.1| - 3e-17 62.7 0.0 5.3e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain FUN14 PF04930.15 gi|292655499|ref|YP_003535396.1| - 9e-22 77.3 4.4 1.1e-21 77.1 4.4 1.1 1 0 0 1 1 1 1 FUN14 family DUF3482 PF11981.8 gi|292655499|ref|YP_003535396.1| - 0.21 10.9 1.0 0.32 10.3 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) GTP-bdg_N PF13167.6 gi|292655500|ref|YP_003535397.1| - 1.8e-21 76.6 0.0 5.7e-21 75.0 0.0 1.9 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|292655500|ref|YP_003535397.1| - 4.9e-18 65.3 0.0 1.4e-17 63.9 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|292655500|ref|YP_003535397.1| - 6.3e-16 58.7 5.7 1.2e-15 57.8 5.7 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|292655500|ref|YP_003535397.1| - 1.5e-11 44.2 0.0 5e-11 42.5 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|292655500|ref|YP_003535397.1| - 4.8e-08 33.1 0.1 0.00057 19.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|292655500|ref|YP_003535397.1| - 1.2e-05 25.0 0.3 0.00064 19.4 0.1 2.3 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|292655500|ref|YP_003535397.1| - 3.8e-05 23.3 0.9 0.063 12.8 0.0 2.9 4 0 0 4 4 4 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|292655500|ref|YP_003535397.1| - 0.001 19.0 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain CbiA PF01656.23 gi|292655500|ref|YP_003535397.1| - 0.0028 17.7 0.0 0.043 13.9 0.0 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.9 gi|292655500|ref|YP_003535397.1| - 0.0036 17.1 0.0 0.69 9.6 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|292655500|ref|YP_003535397.1| - 0.0051 16.3 0.4 2.3 7.6 0.1 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family AAA_18 PF13238.6 gi|292655500|ref|YP_003535397.1| - 0.0074 16.8 0.0 0.032 14.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain Roc PF08477.13 gi|292655500|ref|YP_003535397.1| - 0.035 14.3 0.0 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|292655500|ref|YP_003535397.1| - 0.066 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|292655500|ref|YP_003535397.1| - 0.16 11.7 0.1 10 5.8 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|292655500|ref|YP_003535397.1| - 0.19 11.9 1.0 0.86 9.8 0.3 2.5 2 1 0 2 2 2 0 AAA domain MoaC PF01967.21 gi|292655501|ref|YP_003535398.1| - 6.9e-47 159.0 1.7 7.9e-47 158.8 1.7 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|292655502|ref|YP_003535399.1| - 7.4e-51 173.0 0.5 1.5e-50 171.9 0.5 1.5 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|292655502|ref|YP_003535399.1| - 5.6e-40 137.0 2.1 5.6e-40 137.0 2.1 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|292655502|ref|YP_003535399.1| - 0.00011 21.7 0.0 0.00021 20.8 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.16 gi|292655503|ref|YP_003535400.1| - 2.6e-34 118.7 49.1 2.6e-34 118.7 49.1 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292655503|ref|YP_003535400.1| - 0.0051 15.7 17.1 0.013 14.4 16.7 1.9 1 1 1 2 2 2 1 MFS_1 like family OATP PF03137.20 gi|292655503|ref|YP_003535400.1| - 3.9 5.6 12.1 0.072 11.4 1.4 2.2 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HTH_20 PF12840.7 gi|292655504|ref|YP_003535401.1| - 3e-09 36.8 0.5 4.1e-09 36.4 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292655504|ref|YP_003535401.1| - 3.8e-06 26.7 0.0 5.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292655504|ref|YP_003535401.1| - 0.00064 19.2 0.0 0.00089 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292655504|ref|YP_003535401.1| - 0.016 15.0 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|292655504|ref|YP_003535401.1| - 0.031 14.3 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|292655504|ref|YP_003535401.1| - 0.039 13.8 0.2 0.059 13.3 0.2 1.3 1 0 0 1 1 1 0 MarR family MRP_L53 PF10780.9 gi|292655504|ref|YP_003535401.1| - 0.065 13.4 0.2 0.11 12.7 0.2 1.3 1 0 0 1 1 1 0 39S ribosomal protein L53/MRP-L53 DAGK_cat PF00781.24 gi|292655504|ref|YP_003535401.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain Rrf2 PF02082.20 gi|292655504|ref|YP_003535401.1| - 0.14 12.5 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Helicase_C_2 PF13307.6 gi|292655505|ref|YP_003535402.1| - 1.9e-30 106.3 0.0 3.7e-30 105.3 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|292655505|ref|YP_003535402.1| - 1.5e-06 28.0 0.0 2.9e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 DEAD_2 PhoH PF02562.16 gi|292655505|ref|YP_003535402.1| - 0.00073 19.0 0.0 0.0019 17.7 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.15 gi|292655505|ref|YP_003535402.1| - 0.0013 18.8 0.0 0.049 13.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|292655505|ref|YP_003535402.1| - 0.0054 16.0 0.0 0.053 12.8 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|292655505|ref|YP_003535402.1| - 0.032 14.0 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|292655505|ref|YP_003535402.1| - 0.046 14.0 0.0 1.5 9.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|292655505|ref|YP_003535402.1| - 0.068 12.9 0.0 0.64 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain zf-FCS PF06467.14 gi|292655506|ref|YP_003535403.1| - 0.0063 16.4 0.5 0.013 15.4 0.5 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|292655506|ref|YP_003535403.1| - 0.024 14.6 3.0 0.53 10.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-dskA_traR PF01258.17 gi|292655506|ref|YP_003535403.1| - 0.058 13.4 0.2 0.058 13.4 0.2 1.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger MutS_V PF00488.21 gi|292655508|ref|YP_003535405.1| - 2.6e-06 27.6 0.0 4.6e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_28 PF13521.6 gi|292655508|ref|YP_003535405.1| - 0.00029 21.1 1.1 0.0021 18.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|292655508|ref|YP_003535405.1| - 0.00092 19.1 0.0 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|292655508|ref|YP_003535405.1| - 0.0058 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain PreAtp-grasp PF18604.1 gi|292655508|ref|YP_003535405.1| - 0.016 14.8 0.1 0.065 12.9 0.1 2.1 1 0 0 1 1 1 0 Pre ATP-grasp domain IMS_HHH PF11798.8 gi|292655508|ref|YP_003535405.1| - 0.044 14.1 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif Apolipoprotein PF01442.18 gi|292655508|ref|YP_003535405.1| - 1.1 9.1 11.4 0.09 12.6 5.5 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain UPF0058 PF01893.16 gi|292655509|ref|YP_003535406.1| - 8.4e-10 38.8 0.0 9.6e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 GAF_2 PF13185.6 gi|292655510|ref|YP_003535407.1| - 8.3e-19 68.2 0.7 8.3e-19 68.2 0.7 2.4 3 0 0 3 3 3 1 GAF domain HATPase_c PF02518.26 gi|292655510|ref|YP_003535407.1| - 8.7e-18 64.9 0.0 1.9e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292655510|ref|YP_003535407.1| - 2.6e-16 59.9 1.5 5.9e-16 58.7 1.5 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|292655510|ref|YP_003535407.1| - 3.1e-13 49.9 0.0 9.6e-13 48.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|292655510|ref|YP_003535407.1| - 1.2e-08 35.0 0.3 4.1e-08 33.2 0.3 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|292655510|ref|YP_003535407.1| - 2.1e-05 24.2 0.1 3.9e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|292655510|ref|YP_003535407.1| - 0.0003 20.6 0.0 0.00084 19.2 0.0 1.7 1 0 0 1 1 1 1 GHKL domain GAF PF01590.26 gi|292655510|ref|YP_003535407.1| - 0.0004 21.0 0.0 0.007 17.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|292655510|ref|YP_003535407.1| - 0.00076 19.5 0.1 0.0029 17.6 0.1 2.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|292655510|ref|YP_003535407.1| - 0.0042 17.1 0.3 0.013 15.5 0.3 1.9 1 0 0 1 1 1 1 PAS domain DASH_Duo1 PF08651.10 gi|292655510|ref|YP_003535407.1| - 0.0054 16.5 0.5 0.08 12.7 0.0 2.6 2 1 1 3 3 3 1 DASH complex subunit Duo1 GAF_3 PF13492.6 gi|292655510|ref|YP_003535407.1| - 0.0074 16.6 0.0 0.16 12.3 0.0 2.5 2 0 0 2 2 2 1 GAF domain BAT PF15915.5 gi|292655511|ref|YP_003535408.1| - 3e-35 121.4 17.2 3e-35 121.4 17.2 2.8 3 1 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|292655511|ref|YP_003535408.1| - 3e-21 74.9 0.0 6.3e-21 73.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|292655511|ref|YP_003535408.1| - 2.7e-17 63.0 0.2 6.8e-17 61.7 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|292655511|ref|YP_003535408.1| - 3.7e-10 40.0 10.4 4.3e-10 39.8 7.5 2.9 1 1 1 2 2 2 1 HalX domain GAF_3 PF13492.6 gi|292655511|ref|YP_003535408.1| - 0.00061 20.1 0.9 0.008 16.5 0.0 2.9 3 0 0 3 3 3 1 GAF domain GerE PF00196.19 gi|292655511|ref|YP_003535408.1| - 0.0013 18.3 0.0 0.0056 16.2 0.0 2.0 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|292655511|ref|YP_003535408.1| - 0.0017 17.9 0.0 0.0068 15.9 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 CR6_interact PF10147.9 gi|292655511|ref|YP_003535408.1| - 0.0041 16.9 0.1 0.0064 16.2 0.1 1.2 1 0 0 1 1 1 1 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 HTH_24 PF13412.6 gi|292655511|ref|YP_003535408.1| - 0.0074 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|292655511|ref|YP_003535408.1| - 0.018 14.8 0.1 0.059 13.2 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r4_2 PF08281.12 gi|292655511|ref|YP_003535408.1| - 0.045 13.4 0.0 0.4 10.4 0.0 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 GAF PF01590.26 gi|292655511|ref|YP_003535408.1| - 0.059 14.0 0.0 0.2 12.3 0.0 2.1 1 0 0 1 1 1 0 GAF domain HTH_5 PF01022.20 gi|292655511|ref|YP_003535408.1| - 0.098 12.5 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Flagellin_IN PF07196.13 gi|292655511|ref|YP_003535408.1| - 0.18 12.0 2.8 1.2 9.4 0.1 2.8 2 0 0 2 2 2 0 Flagellin hook IN motif DUF1522 PF07482.11 gi|292655511|ref|YP_003535408.1| - 0.2 12.0 4.2 0.48 10.8 4.0 1.8 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1522) Response_reg PF00072.24 gi|292655512|ref|YP_003535409.1| - 1.6e-14 54.0 0.0 2.1e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain CpXC PF14353.6 gi|292655513|ref|YP_003535410.1| - 0.0013 18.7 1.1 0.0017 18.4 1.1 1.1 1 0 0 1 1 1 1 CpXC protein PDGF PF00341.17 gi|292655513|ref|YP_003535410.1| - 0.0042 17.4 1.6 0.0042 17.3 0.8 1.4 1 1 0 1 1 1 1 PDGF/VEGF domain Zn-ribbon_8 PF09723.10 gi|292655513|ref|YP_003535410.1| - 0.0094 16.0 3.1 1.2 9.3 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292655513|ref|YP_003535410.1| - 0.059 13.4 4.9 2.4 8.2 5.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|292655513|ref|YP_003535410.1| - 0.18 12.6 4.8 0.37 11.6 4.5 1.6 1 1 0 1 1 1 0 zinc-ribbon family CxC7 PF18866.1 gi|292655513|ref|YP_003535410.1| - 0.32 11.2 3.8 0.69 10.1 0.4 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases HalOD2 PF18547.1 gi|292655513|ref|YP_003535410.1| - 0.36 10.8 0.2 0.36 10.8 0.2 1.9 2 0 0 2 2 2 0 Halobacterial output domain 2 Med16 PF11635.8 gi|292655513|ref|YP_003535410.1| - 0.65 7.8 3.6 0.63 7.9 3.6 1.0 1 0 0 1 1 1 0 Mediator complex subunit 16 Zn_ribbon_SprT PF17283.2 gi|292655513|ref|YP_003535410.1| - 1.2 9.1 7.4 6.3 6.8 7.4 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TrmB PF01978.19 gi|292655514|ref|YP_003535411.1| - 1.3e-16 60.2 0.0 1.7e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|292655514|ref|YP_003535411.1| - 3.2e-06 27.5 0.1 4.4e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|292655514|ref|YP_003535411.1| - 7.4e-05 22.5 0.1 0.00015 21.5 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292655514|ref|YP_003535411.1| - 9.4e-05 22.2 0.2 0.00015 21.6 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|292655514|ref|YP_003535411.1| - 0.00016 21.2 0.1 0.00027 20.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292655514|ref|YP_003535411.1| - 0.00054 19.8 0.1 0.0014 18.5 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|292655514|ref|YP_003535411.1| - 0.003 18.0 0.3 0.0059 17.1 0.2 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|292655514|ref|YP_003535411.1| - 0.0047 16.9 0.0 0.0066 16.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|292655514|ref|YP_003535411.1| - 0.0057 16.4 0.1 0.0096 15.7 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain UMPH-1 PF05822.12 gi|292655514|ref|YP_003535411.1| - 0.0081 15.7 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) GntR PF00392.21 gi|292655514|ref|YP_003535411.1| - 0.0097 15.5 0.3 0.016 14.8 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RuvB_C PF05491.13 gi|292655514|ref|YP_003535411.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|292655514|ref|YP_003535411.1| - 0.012 15.7 0.2 0.018 15.1 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|292655514|ref|YP_003535411.1| - 0.02 15.0 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292655514|ref|YP_003535411.1| - 0.038 14.0 0.4 0.072 13.1 0.4 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|292655514|ref|YP_003535411.1| - 0.041 13.8 0.3 0.093 12.7 0.3 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Tnp_1_2 PF13022.6 gi|292655514|ref|YP_003535411.1| - 0.057 13.6 0.1 0.098 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 gi|292655514|ref|YP_003535411.1| - 0.078 13.0 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Rio2_N PF09202.11 gi|292655514|ref|YP_003535411.1| - 0.085 13.1 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal HTH_5 PF01022.20 gi|292655514|ref|YP_003535411.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|292655514|ref|YP_003535411.1| - 0.096 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TauE PF01925.19 gi|292655515|ref|YP_003535412.1| - 4.4e-41 141.1 26.3 4.4e-41 141.1 26.3 1.9 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE DUF5337 PF17272.2 gi|292655516|ref|YP_003535413.1| - 0.061 13.2 0.6 0.069 13.0 0.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5337) SLATT_fungal PF18142.1 gi|292655516|ref|YP_003535413.1| - 0.12 12.4 0.6 0.12 12.4 0.6 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain Sulf_transp PF04143.14 gi|292655517|ref|YP_003535414.1| - 3.5e-05 23.5 9.2 3.5e-05 23.5 9.2 2.1 1 1 1 2 2 2 2 Sulphur transport DUF4235 PF14019.6 gi|292655517|ref|YP_003535414.1| - 0.2 11.8 4.8 5 7.3 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) Sulf_transp PF04143.14 gi|292655518|ref|YP_003535415.1| - 7e-13 48.8 12.7 9.1e-13 48.4 12.7 1.1 1 0 0 1 1 1 1 Sulphur transport Lactamase_B PF00753.27 gi|292655519|ref|YP_003535416.1| - 4.8e-17 62.6 8.9 8e-17 61.9 8.9 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|292655519|ref|YP_003535416.1| - 3.7e-08 33.9 0.0 6.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|292655519|ref|YP_003535416.1| - 0.0071 15.9 0.8 0.012 15.2 0.8 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292655519|ref|YP_003535416.1| - 0.029 14.3 0.1 0.063 13.2 0.1 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TusA PF01206.17 gi|292655520|ref|YP_003535417.1| - 3.1e-18 65.4 0.0 3.6e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|292655520|ref|YP_003535417.1| - 9e-05 22.3 0.0 0.00025 20.9 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|292655521|ref|YP_003535418.1| - 6e-52 175.6 1.4 9.1e-52 175.0 1.4 1.3 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|292655521|ref|YP_003535418.1| - 9.2e-08 32.5 0.2 5e-07 30.1 0.0 2.1 2 1 0 2 2 2 1 DsrE/DsrF-like family DUF3138 PF11336.8 gi|292655521|ref|YP_003535418.1| - 0.0092 14.7 0.2 0.015 14.0 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3138) Cnn_1N PF07989.11 gi|292655521|ref|YP_003535418.1| - 0.036 14.2 0.0 2.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 DUF1192 PF06698.11 gi|292655521|ref|YP_003535418.1| - 0.042 13.9 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DNA_pol_lambd_f PF10391.9 gi|292655521|ref|YP_003535418.1| - 0.07 13.0 0.4 10 6.0 0.0 3.1 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Lactamase_B PF00753.27 gi|292655522|ref|YP_003535419.1| - 1.4e-24 87.2 12.5 1.9e-24 86.8 12.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292655522|ref|YP_003535419.1| - 1.4e-08 34.5 1.1 2e-08 34.0 1.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292655522|ref|YP_003535419.1| - 0.065 13.1 0.2 0.094 12.6 0.2 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain AIM24 PF01987.17 gi|292655523|ref|YP_003535420.1| - 4.2e-29 101.8 0.2 4.8e-29 101.6 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Aldedh PF00171.22 gi|292655524|ref|YP_003535421.1| - 2e-22 79.3 3.9 1.3e-18 66.8 1.3 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family LTXXQ PF07813.12 gi|292655524|ref|YP_003535421.1| - 0.12 13.2 1.5 0.24 12.2 1.5 1.5 1 0 0 1 1 1 0 LTXXQ motif family protein AA_kinase PF00696.28 gi|292655525|ref|YP_003535422.1| - 9.6e-40 136.7 0.8 9.6e-40 136.7 0.8 1.6 2 0 0 2 2 2 1 Amino acid kinase family Adaptin_binding PF10199.9 gi|292655525|ref|YP_003535422.1| - 0.46 11.1 2.3 0.82 10.3 1.7 1.6 2 0 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 P5CR_dimer PF14748.6 gi|292655526|ref|YP_003535423.1| - 3.2e-35 120.5 1.1 6.4e-35 119.5 1.1 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|292655526|ref|YP_003535423.1| - 2.5e-17 63.3 0.8 1.4e-16 60.9 0.0 2.5 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|292655526|ref|YP_003535423.1| - 3.6e-06 27.3 0.3 1.2e-05 25.6 0.0 2.0 2 2 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|292655526|ref|YP_003535423.1| - 0.00043 20.2 1.1 0.0025 17.7 0.0 2.6 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 gi|292655526|ref|YP_003535423.1| - 0.0012 17.9 0.2 0.024 13.7 0.2 2.0 2 0 0 2 2 2 1 Prephenate dehydrogenase TrkA_N PF02254.18 gi|292655526|ref|YP_003535423.1| - 0.0028 17.9 0.3 0.013 15.8 0.0 2.3 2 1 0 2 2 2 1 TrkA-N domain ApbA PF02558.16 gi|292655526|ref|YP_003535423.1| - 0.02 14.5 1.7 0.66 9.6 1.7 2.3 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_25 PF13649.6 gi|292655526|ref|YP_003535423.1| - 0.036 14.8 0.4 0.29 11.9 0.1 2.5 2 1 0 2 2 2 0 Methyltransferase domain GFO_IDH_MocA PF01408.22 gi|292655526|ref|YP_003535423.1| - 0.078 13.8 0.4 0.62 10.9 0.0 2.6 1 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|292655526|ref|YP_003535423.1| - 0.083 13.2 0.6 0.28 11.5 0.0 2.1 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Acyl-CoA_dh_1 PF00441.24 gi|292655527|ref|YP_003535424.1| - 1.7e-44 151.6 2.6 3.4e-44 150.7 2.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|292655527|ref|YP_003535424.1| - 3.5e-28 97.7 0.3 1e-27 96.1 0.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|292655527|ref|YP_003535424.1| - 2.8e-26 92.4 0.9 2.8e-26 92.4 0.9 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|292655527|ref|YP_003535424.1| - 4.3e-19 69.1 3.7 7.3e-19 68.4 3.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|292655527|ref|YP_003535424.1| - 0.00012 21.8 0.1 0.00051 19.8 0.1 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.28 gi|292655528|ref|YP_003535425.1| - 1.2e-92 310.7 0.0 1.5e-92 310.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655528|ref|YP_003535425.1| - 9.1e-24 84.2 0.3 2.1e-23 83.1 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|292655529|ref|YP_003535426.1| - 1.3e-88 297.4 0.1 1.8e-88 297.0 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655529|ref|YP_003535426.1| - 7.3e-17 62.1 0.1 2.7e-16 60.3 0.1 2.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Glyoxalase_4 PF13669.6 gi|292655530|ref|YP_003535427.1| - 2.3e-17 63.2 0.2 2.7e-17 63.0 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|292655530|ref|YP_003535427.1| - 2.3e-09 37.6 0.7 2.5e-09 37.5 0.7 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|292655530|ref|YP_003535427.1| - 2.8e-06 27.5 0.3 3.3e-06 27.3 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|292655530|ref|YP_003535427.1| - 0.00016 22.5 0.4 0.0002 22.1 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain YbjQ_1 PF01906.17 gi|292655531|ref|YP_003535428.1| - 7.9e-36 122.8 7.8 9.2e-36 122.6 7.8 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding MM_CoA_mutase PF01642.22 gi|292655534|ref|YP_003535431.1| - 1.4e-223 743.1 1.8 1.6e-223 742.9 1.8 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Methyltransf_3 PF01596.17 gi|292655535|ref|YP_003535432.1| - 5.4e-20 71.5 0.0 6.6e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|292655535|ref|YP_003535432.1| - 8.5e-14 52.5 1.7 1.2e-13 52.0 0.9 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655535|ref|YP_003535432.1| - 0.00072 19.4 0.0 0.00095 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|292655535|ref|YP_003535432.1| - 0.2 11.4 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.19 gi|292655535|ref|YP_003535432.1| - 0.21 11.3 0.0 0.44 10.2 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NAC PF01849.18 gi|292655536|ref|YP_003535433.1| - 5.5e-18 64.7 0.5 7.6e-18 64.2 0.5 1.2 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|292655536|ref|YP_003535433.1| - 0.015 15.1 0.1 0.031 14.1 0.1 1.5 1 0 0 1 1 1 0 UBA-like domain UBA PF00627.31 gi|292655536|ref|YP_003535433.1| - 0.034 14.1 0.4 0.1 12.6 0.4 1.8 1 0 0 1 1 1 0 UBA/TS-N domain CUE PF02845.16 gi|292655536|ref|YP_003535433.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 CUE domain GCD14 PF08704.10 gi|292655537|ref|YP_003535434.1| - 2e-18 66.9 0.0 2.3e-15 57.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|292655537|ref|YP_003535434.1| - 1.1e-08 35.0 0.0 1.5e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292655537|ref|YP_003535434.1| - 1.2e-07 32.4 0.6 1.7e-07 31.9 0.2 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655537|ref|YP_003535434.1| - 1.4e-07 32.1 0.1 2.4e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|292655537|ref|YP_003535434.1| - 1e-05 25.1 0.1 2.6e-05 23.8 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|292655537|ref|YP_003535434.1| - 2.8e-05 23.7 0.1 3.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|292655537|ref|YP_003535434.1| - 4.5e-05 24.4 0.3 8e-05 23.6 0.1 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|292655537|ref|YP_003535434.1| - 9e-05 21.7 0.0 0.00012 21.4 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.19 gi|292655537|ref|YP_003535434.1| - 0.00013 21.8 0.1 0.00017 21.4 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|292655537|ref|YP_003535434.1| - 0.00015 21.0 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|292655537|ref|YP_003535434.1| - 0.00035 20.5 0.0 0.0015 18.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|292655537|ref|YP_003535434.1| - 0.00098 18.8 0.1 0.0015 18.1 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|292655537|ref|YP_003535434.1| - 0.0019 17.6 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|292655537|ref|YP_003535434.1| - 0.0056 16.0 0.0 0.0067 15.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|292655537|ref|YP_003535434.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|292655537|ref|YP_003535434.1| - 0.028 15.1 0.1 0.052 14.3 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|292655537|ref|YP_003535434.1| - 0.031 14.2 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|292655537|ref|YP_003535434.1| - 0.074 13.0 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase SAM_MT PF04445.13 gi|292655537|ref|YP_003535434.1| - 0.098 12.1 0.2 0.14 11.6 0.2 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_15 PF09445.10 gi|292655537|ref|YP_003535434.1| - 0.19 11.3 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TFIIS_C PF01096.18 gi|292655539|ref|YP_003535436.1| - 1.1e-17 63.5 2.8 1.1e-17 63.5 2.8 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|292655539|ref|YP_003535436.1| - 1.8e-05 24.5 9.2 2.9e-05 23.8 0.5 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|292655539|ref|YP_003535436.1| - 5.6e-05 22.4 4.8 0.27 10.7 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292655539|ref|YP_003535436.1| - 0.00026 20.8 5.1 0.054 13.4 0.6 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|292655539|ref|YP_003535436.1| - 0.00027 20.9 5.1 0.15 12.1 1.4 2.4 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|292655539|ref|YP_003535436.1| - 0.0008 19.3 1.2 0.0008 19.3 1.2 2.1 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|292655539|ref|YP_003535436.1| - 0.0024 17.5 5.7 0.012 15.3 0.1 3.2 3 0 0 3 3 3 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|292655539|ref|YP_003535436.1| - 0.0044 17.1 5.4 0.13 12.4 0.0 3.6 3 1 0 3 3 3 1 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|292655539|ref|YP_003535436.1| - 0.006 17.1 1.8 0.94 10.0 0.0 2.5 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain DUF3268 PF11672.8 gi|292655539|ref|YP_003535436.1| - 0.018 15.3 1.7 0.025 14.9 0.4 1.8 2 0 0 2 2 2 0 zinc-finger-containing domain DUF2387 PF09526.10 gi|292655539|ref|YP_003535436.1| - 0.022 14.9 2.4 0.022 14.9 2.4 1.9 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DNA_ligase_ZBD PF03119.16 gi|292655539|ref|YP_003535436.1| - 0.027 14.5 0.9 0.35 10.9 0.0 2.6 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain FdhE PF04216.12 gi|292655539|ref|YP_003535436.1| - 0.047 13.6 0.1 0.047 13.6 0.1 1.5 2 0 0 2 2 1 0 Protein involved in formate dehydrogenase formation zf_UBZ PF18439.1 gi|292655539|ref|YP_003535436.1| - 0.055 13.1 5.6 6.5 6.4 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|292655539|ref|YP_003535436.1| - 0.14 12.2 2.6 2.6 8.1 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Nudix_N_2 PF14803.6 gi|292655539|ref|YP_003535436.1| - 0.21 11.5 7.7 1.3 9.0 1.5 2.8 2 2 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|292655539|ref|YP_003535436.1| - 0.21 12.0 5.1 0.54 10.7 0.8 2.3 2 1 0 2 2 2 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|292655539|ref|YP_003535436.1| - 0.23 11.4 10.3 4.1 7.5 0.1 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon NOB1_Zn_bind PF08772.11 gi|292655539|ref|YP_003535436.1| - 0.3 11.3 3.9 4.5 7.5 0.2 2.5 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_4 PF13717.6 gi|292655539|ref|YP_003535436.1| - 0.33 10.9 5.9 2.9 7.9 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|292655539|ref|YP_003535436.1| - 0.4 10.5 0.1 0.4 10.5 0.1 3.1 4 0 0 4 4 4 0 zinc-ribbon domain DUF4379 PF14311.6 gi|292655539|ref|YP_003535436.1| - 0.52 10.7 7.8 3.8 7.9 0.4 3.3 2 1 1 3 3 3 0 Probable Zinc-ribbon domain Rpr2 PF04032.16 gi|292655539|ref|YP_003535436.1| - 0.53 10.6 3.8 4 7.8 3.8 2.2 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-IS66 PF13005.7 gi|292655539|ref|YP_003535436.1| - 0.58 10.6 8.8 5.3 7.5 0.1 3.3 3 1 1 4 4 3 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.19 gi|292655539|ref|YP_003535436.1| - 0.62 9.9 4.9 2.8 7.8 0.1 2.6 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger FYDLN_acid PF09538.10 gi|292655539|ref|YP_003535436.1| - 1.1 9.9 7.2 6.1 7.6 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc-ribbons_6 PF07191.12 gi|292655539|ref|YP_003535436.1| - 1.3 9.0 7.2 3.1 7.8 1.8 2.8 2 2 1 3 3 3 0 zinc-ribbons IBR PF01485.21 gi|292655539|ref|YP_003535436.1| - 1.8 8.8 9.0 1.8 8.9 1.5 2.6 1 1 0 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_15 PF17032.5 gi|292655539|ref|YP_003535436.1| - 5.2 7.9 7.8 2.9 8.7 1.6 2.6 1 1 1 2 2 2 0 zinc-ribbon family zinc_ribbon_10 PF10058.9 gi|292655539|ref|YP_003535436.1| - 5.5 6.8 6.5 2 8.2 1.6 2.6 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein ECH_1 PF00378.20 gi|292655541|ref|YP_003535438.1| - 1.6e-63 214.4 0.0 1.7e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|292655541|ref|YP_003535438.1| - 8.7e-35 120.8 0.2 2.3e-34 119.4 0.2 1.6 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|292655541|ref|YP_003535438.1| - 0.0013 17.8 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase PqqD PF05402.12 gi|292655542|ref|YP_003535439.1| - 0.022 15.1 0.0 0.048 14.0 0.0 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) GntR PF00392.21 gi|292655542|ref|YP_003535439.1| - 0.08 12.6 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Methyltransf_31 PF13847.6 gi|292655543|ref|YP_003535440.1| - 3.3e-15 56.2 0.0 3.7e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655543|ref|YP_003535440.1| - 3.3e-14 53.3 0.1 4.8e-14 52.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292655543|ref|YP_003535440.1| - 5e-13 49.6 0.1 7.7e-13 49.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292655543|ref|YP_003535440.1| - 9.8e-11 42.3 0.1 1.3e-10 41.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|292655543|ref|YP_003535440.1| - 1.2e-05 24.9 0.0 1.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|292655543|ref|YP_003535440.1| - 2.1e-05 24.0 0.0 2.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|292655543|ref|YP_003535440.1| - 2.3e-05 24.2 0.0 3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.20 gi|292655543|ref|YP_003535440.1| - 4.1e-05 23.0 0.0 5.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|292655543|ref|YP_003535440.1| - 4.3e-05 23.4 0.0 6e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|292655543|ref|YP_003535440.1| - 4.6e-05 22.9 0.0 0.00017 21.1 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase FmrO PF07091.11 gi|292655543|ref|YP_003535440.1| - 6.2e-05 22.7 0.1 8.9e-05 22.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.19 gi|292655543|ref|YP_003535440.1| - 0.00012 22.0 0.0 0.00017 21.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.6 gi|292655543|ref|YP_003535440.1| - 0.00092 20.2 0.2 0.0014 19.6 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|292655543|ref|YP_003535440.1| - 0.0036 16.7 0.2 0.0043 16.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|292655543|ref|YP_003535440.1| - 0.029 14.3 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|292655543|ref|YP_003535440.1| - 0.045 12.7 0.0 0.058 12.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_18 PF12847.7 gi|292655543|ref|YP_003535440.1| - 0.09 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|292655543|ref|YP_003535440.1| - 0.098 12.5 0.1 0.66 9.8 0.1 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase NUDIX PF00293.28 gi|292655545|ref|YP_003535442.1| - 5.9e-18 65.2 0.4 8.1e-18 64.7 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|292655545|ref|YP_003535442.1| - 0.0051 17.2 0.0 0.0066 16.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain Ribosomal_S10 PF00338.22 gi|292655546|ref|YP_003535443.1| - 6.5e-10 39.1 0.0 7.6e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e CSD2 PF17876.1 gi|292655547|ref|YP_003535444.1| - 0.0052 16.9 0.1 0.0091 16.1 0.1 1.4 1 1 0 1 1 1 1 Cold shock domain Na_H_antiporter PF03553.14 gi|292655548|ref|YP_003535445.1| - 4.5e-29 101.7 41.9 2.1e-15 56.7 21.5 2.5 2 1 0 2 2 2 2 Na+/H+ antiporter family Peptidase_M20 PF01546.28 gi|292655549|ref|YP_003535446.1| - 7.7e-21 74.7 5.9 1.1e-20 74.3 5.9 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292655549|ref|YP_003535446.1| - 8.5e-09 35.3 0.7 2.3e-08 33.9 0.7 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain HATPase_c PF02518.26 gi|292655550|ref|YP_003535447.1| - 4.2e-14 53.0 0.0 1.3e-13 51.5 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|292655550|ref|YP_003535447.1| - 3e-11 43.2 1.2 5.4e-11 42.4 1.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|292655550|ref|YP_003535447.1| - 0.00029 20.8 0.1 0.00084 19.3 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain TetR_C_24 PF17932.1 gi|292655550|ref|YP_003535447.1| - 0.059 13.6 1.3 7 7.0 0.2 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF3247 PF11607.8 gi|292655550|ref|YP_003535447.1| - 0.13 12.5 0.5 0.36 11.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3247) Trp_halogenase PF04820.14 gi|292655551|ref|YP_003535448.1| - 7.2e-12 44.9 0.8 4.8e-07 29.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|292655551|ref|YP_003535448.1| - 4.7e-11 42.4 2.9 1.4e-06 27.7 1.6 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|292655551|ref|YP_003535448.1| - 9.1e-11 41.6 4.5 5.7e-10 39.0 4.5 2.2 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|292655551|ref|YP_003535448.1| - 3.1e-10 40.5 0.6 9.3e-06 26.1 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|292655551|ref|YP_003535448.1| - 1.1e-09 38.2 2.5 9.6e-05 21.9 0.8 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|292655551|ref|YP_003535448.1| - 8.5e-09 35.5 9.2 0.00045 19.9 1.2 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292655551|ref|YP_003535448.1| - 2.1e-06 27.2 8.2 1.5e-05 24.4 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|292655551|ref|YP_003535448.1| - 3.7e-06 26.3 3.1 7.2e-06 25.3 3.1 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|292655551|ref|YP_003535448.1| - 6e-06 26.4 0.4 6e-06 26.4 0.4 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|292655551|ref|YP_003535448.1| - 2e-05 23.5 0.8 0.00015 20.6 0.4 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|292655551|ref|YP_003535448.1| - 0.00013 21.4 3.0 0.00039 19.7 0.1 2.5 2 1 1 3 3 3 1 Thi4 family Amino_oxidase PF01593.24 gi|292655551|ref|YP_003535448.1| - 0.00049 19.5 0.0 0.025 13.9 0.0 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|292655551|ref|YP_003535448.1| - 0.00064 19.4 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|292655551|ref|YP_003535448.1| - 0.00069 19.0 0.5 0.0025 17.1 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|292655551|ref|YP_003535448.1| - 0.00074 18.7 7.2 0.035 13.2 0.4 2.8 2 1 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|292655551|ref|YP_003535448.1| - 0.00088 19.2 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|292655551|ref|YP_003535448.1| - 0.0018 17.6 2.0 0.0021 17.4 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|292655551|ref|YP_003535448.1| - 0.028 14.5 0.0 0.077 13.1 0.0 1.7 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|292655551|ref|YP_003535448.1| - 0.034 13.5 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 ThiF family Mqo PF06039.15 gi|292655551|ref|YP_003535448.1| - 0.12 10.9 0.0 0.4 9.2 0.0 1.7 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) NAD_binding_7 PF13241.6 gi|292655551|ref|YP_003535448.1| - 0.13 12.7 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding BPD_transp_2 PF02653.16 gi|292655552|ref|YP_003535449.1| - 4e-35 121.3 31.6 4e-35 121.3 31.6 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|292655553|ref|YP_003535450.1| - 5.8e-44 150.3 28.9 5.8e-44 150.3 28.9 2.0 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component DUF1269 PF06897.12 gi|292655553|ref|YP_003535450.1| - 0.041 14.2 2.4 0.15 12.4 2.4 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) ABC_tran PF00005.27 gi|292655554|ref|YP_003535451.1| - 2e-48 164.4 0.0 1.5e-30 106.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|292655554|ref|YP_003535451.1| - 2.8e-11 43.8 0.3 1.1e-05 25.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|292655554|ref|YP_003535451.1| - 9.7e-06 25.2 0.1 0.038 13.7 0.0 2.7 3 0 0 3 3 3 2 P-loop containing region of AAA domain Bac_DnaA PF00308.18 gi|292655554|ref|YP_003535451.1| - 3.9e-05 23.6 0.7 9.2e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein RsgA_GTPase PF03193.16 gi|292655554|ref|YP_003535451.1| - 0.0013 18.7 0.0 0.12 12.2 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|292655554|ref|YP_003535451.1| - 0.0021 18.6 0.0 0.0062 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|292655554|ref|YP_003535451.1| - 0.007 15.8 0.0 4.5 6.6 0.0 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292655554|ref|YP_003535451.1| - 0.0082 15.9 0.0 0.66 9.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|292655554|ref|YP_003535451.1| - 0.016 14.9 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|292655554|ref|YP_003535451.1| - 0.091 12.3 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Bmp PF02608.14 gi|292655555|ref|YP_003535452.1| - 2.4e-59 200.8 8.4 4.1e-59 200.0 8.4 1.3 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|292655555|ref|YP_003535452.1| - 0.00041 20.1 2.0 0.0014 18.4 2.0 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PGM_PMM_I PF02878.16 gi|292655556|ref|YP_003535453.1| - 9e-36 122.6 0.1 2.4e-35 121.3 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|292655556|ref|YP_003535453.1| - 2.2e-22 79.6 0.5 5.8e-22 78.3 0.2 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|292655556|ref|YP_003535453.1| - 1.5e-10 41.1 2.9 2.7e-10 40.3 0.1 2.7 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|292655556|ref|YP_003535453.1| - 0.0013 18.9 0.0 0.003 17.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.18 gi|292655557|ref|YP_003535454.1| - 3.7e-26 91.3 0.0 4.2e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF429 PF04250.13 gi|292655560|ref|YP_003535457.1| - 1.9e-43 148.7 11.8 2.5e-43 148.4 11.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF429) HTH_20 PF12840.7 gi|292655561|ref|YP_003535458.1| - 0.00012 22.1 1.0 0.00025 21.0 0.1 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655561|ref|YP_003535458.1| - 0.00021 21.0 0.7 0.00056 19.7 0.2 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|292655561|ref|YP_003535458.1| - 0.0029 17.5 0.1 0.0063 16.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|292655561|ref|YP_003535458.1| - 0.0038 17.2 0.0 0.0098 15.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|292655561|ref|YP_003535458.1| - 0.0063 16.4 0.1 0.019 14.8 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292655561|ref|YP_003535458.1| - 0.0087 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|292655561|ref|YP_003535458.1| - 0.026 14.4 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|292655561|ref|YP_003535458.1| - 0.044 13.3 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|292655561|ref|YP_003535458.1| - 0.045 13.9 0.0 0.37 10.9 0.0 2.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|292655561|ref|YP_003535458.1| - 0.059 13.7 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Replic_Relax PF13814.6 gi|292655561|ref|YP_003535458.1| - 0.094 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 gi|292655561|ref|YP_003535458.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3117 PF11314.8 gi|292655561|ref|YP_003535458.1| - 0.16 11.8 0.2 0.5 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) DoxX PF07681.12 gi|292655562|ref|YP_003535459.1| - 7.2e-10 39.3 11.9 7.2e-10 39.3 11.9 1.7 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|292655562|ref|YP_003535459.1| - 0.00034 20.8 0.9 0.0016 18.6 0.2 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.15 gi|292655562|ref|YP_003535459.1| - 0.042 13.4 0.2 0.062 12.9 0.2 1.2 1 0 0 1 1 1 0 SURF4 family Flavin_Reduct PF01613.18 gi|292655563|ref|YP_003535460.1| - 6.5e-23 81.5 0.2 8.8e-23 81.1 0.2 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Alkyl_sulf_C PF14864.6 gi|292655563|ref|YP_003535460.1| - 0.15 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 Alkyl sulfatase C-terminal RskA PF10099.9 gi|292655564|ref|YP_003535461.1| - 1.5 9.0 10.6 0.081 13.2 2.6 2.2 2 1 0 2 2 2 0 Anti-sigma-K factor rskA Polyketide_cyc2 PF10604.9 gi|292655565|ref|YP_003535462.1| - 2e-13 50.8 6.9 2.4e-13 50.5 6.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|292655565|ref|YP_003535462.1| - 3.1e-05 24.2 0.4 4.5e-05 23.7 0.4 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport GHMP_kinases_N PF00288.26 gi|292655566|ref|YP_003535463.1| - 1e-06 28.9 1.4 0.00011 22.3 0.1 2.4 2 0 0 2 2 2 2 GHMP kinases N terminal domain MDD_C PF18376.1 gi|292655566|ref|YP_003535463.1| - 2.1e-06 27.6 0.0 3.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain Methyltransf_34 PF11312.8 gi|292655566|ref|YP_003535463.1| - 0.045 13.0 0.0 0.07 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Pyr_redox_2 PF07992.14 gi|292655567|ref|YP_003535464.1| - 1.2e-30 106.8 2.8 1.6e-30 106.4 2.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292655567|ref|YP_003535464.1| - 8.4e-16 58.3 0.8 6.9e-11 42.6 0.4 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292655567|ref|YP_003535464.1| - 6.8e-06 25.9 7.5 0.11 12.0 0.0 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|292655567|ref|YP_003535464.1| - 0.00011 22.2 4.8 1.3 9.0 0.2 3.4 2 2 1 3 3 3 3 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|292655567|ref|YP_003535464.1| - 0.00031 20.9 0.1 0.37 11.0 0.0 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|292655567|ref|YP_003535464.1| - 0.0022 18.2 0.8 0.012 15.8 0.1 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|292655567|ref|YP_003535464.1| - 0.015 15.5 0.4 5.6 7.3 0.0 3.0 2 1 1 3 3 3 0 TrkA-N domain K_oxygenase PF13434.6 gi|292655567|ref|YP_003535464.1| - 0.064 12.4 0.0 1.3 8.0 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|292655567|ref|YP_003535464.1| - 0.75 8.8 3.2 2 7.4 0.0 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein HisKA_7TM PF16927.5 gi|292655568|ref|YP_003535465.1| - 2.2e-40 139.0 16.0 2.8e-40 138.7 16.0 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|292655568|ref|YP_003535465.1| - 2e-13 50.9 0.0 4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292655568|ref|YP_003535465.1| - 4.8e-09 36.4 3.9 3.2e-06 27.4 0.7 3.4 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|292655568|ref|YP_003535465.1| - 0.00026 20.9 0.1 0.0014 18.6 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|292655568|ref|YP_003535465.1| - 0.0011 18.6 0.1 0.0048 16.5 0.1 2.1 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|292655568|ref|YP_003535465.1| - 0.0019 18.4 0.0 0.64 10.2 0.0 2.5 1 1 0 2 2 2 1 PAS fold SPOB_a PF14689.6 gi|292655568|ref|YP_003535465.1| - 0.0032 17.1 0.2 0.0063 16.2 0.2 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_8 PF13188.7 gi|292655568|ref|YP_003535465.1| - 0.004 17.2 0.1 0.013 15.5 0.1 1.8 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|292655568|ref|YP_003535465.1| - 0.016 15.2 1.1 0.032 14.3 1.1 1.5 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|292655568|ref|YP_003535465.1| - 0.025 14.6 0.0 0.15 12.0 0.0 2.1 1 1 0 2 2 2 0 PAS fold DUF2542 PF10808.8 gi|292655568|ref|YP_003535465.1| - 0.037 14.5 0.4 0.12 12.9 0.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2542) 7TMR-DISM_7TM PF07695.11 gi|292655568|ref|YP_003535465.1| - 0.045 13.6 12.9 0.072 13.0 12.9 1.3 1 0 0 1 1 1 0 7TM diverse intracellular signalling SpoVT_C PF15714.5 gi|292655568|ref|YP_003535465.1| - 0.19 11.8 0.0 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor 5TM-5TMR_LYT PF07694.12 gi|292655568|ref|YP_003535465.1| - 0.83 9.1 6.2 0.23 10.9 1.1 2.3 2 0 0 2 2 2 0 5TMR of 5TMR-LYT HAD_2 PF13419.6 gi|292655569|ref|YP_003535466.1| - 1.8e-23 83.5 0.0 4.7e-23 82.2 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292655569|ref|YP_003535466.1| - 1.8e-13 51.3 1.7 3.8e-13 50.2 1.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292655569|ref|YP_003535466.1| - 1.5e-11 44.2 0.3 3.5e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|292655569|ref|YP_003535466.1| - 3.9e-07 30.7 0.7 5e-07 30.3 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase APH PF01636.23 gi|292655570|ref|YP_003535467.1| - 2e-14 54.1 6.8 3e-14 53.5 6.8 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|292655570|ref|YP_003535467.1| - 0.013 14.7 0.0 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 Fructosamine kinase ArsP_1 PF03773.13 gi|292655571|ref|YP_003535468.1| - 6.5e-101 337.3 5.6 8.2e-101 337.0 5.6 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|292655571|ref|YP_003535468.1| - 2.1e-15 56.5 1.4 2.1e-15 56.5 1.4 1.8 2 0 0 2 2 2 1 YHS domain zf-FCS PF06467.14 gi|292655571|ref|YP_003535468.1| - 0.0021 18.0 0.9 0.004 17.0 0.9 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.20 gi|292655571|ref|YP_003535468.1| - 0.1 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L24e Arc_trans_TRASH PF08394.10 gi|292655571|ref|YP_003535468.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.3 1 0 0 1 1 1 0 Archaeal TRASH domain HTH_10 PF04967.12 gi|292655572|ref|YP_003535469.1| - 1e-18 66.8 0.1 1.8e-18 66.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|292655572|ref|YP_003535469.1| - 0.00045 19.8 0.1 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|292655572|ref|YP_003535469.1| - 0.0035 16.8 2.5 0.0053 16.3 1.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|292655572|ref|YP_003535469.1| - 0.006 16.4 0.1 0.017 15.0 0.0 1.8 2 1 0 2 2 2 1 MarR family HTH_37 PF13744.6 gi|292655572|ref|YP_003535469.1| - 0.01 15.8 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|292655572|ref|YP_003535469.1| - 0.015 15.5 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Fe_dep_repress PF01325.19 gi|292655572|ref|YP_003535469.1| - 0.019 15.1 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.16 gi|292655572|ref|YP_003535469.1| - 0.042 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_1 PF00126.27 gi|292655572|ref|YP_003535469.1| - 0.069 13.1 0.1 0.19 11.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.22 gi|292655572|ref|YP_003535469.1| - 0.069 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.6 gi|292655572|ref|YP_003535469.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ADH_zinc_N_2 PF13602.6 gi|292655574|ref|YP_003535471.1| - 1.2e-19 71.7 0.0 1.4e-19 71.4 0.0 1.0 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|292655574|ref|YP_003535471.1| - 2.5e-05 24.2 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 2 Zinc-binding dehydrogenase Phage_integrase PF00589.22 gi|292655575|ref|YP_003535472.1| - 5.1e-09 36.1 0.0 1.5e-06 28.1 0.0 2.4 3 0 0 3 3 3 2 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|292655575|ref|YP_003535472.1| - 1.8e-06 28.1 0.0 5.5e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|292655575|ref|YP_003535472.1| - 0.00051 20.5 0.1 0.11 12.9 0.0 2.8 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|292655575|ref|YP_003535472.1| - 0.077 13.3 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain HTH_24 PF13412.6 gi|292655576|ref|YP_003535473.1| - 0.00069 19.1 0.0 0.00096 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Mrr_N PF14338.6 gi|292655576|ref|YP_003535473.1| - 0.0012 18.9 0.0 0.005 16.9 0.0 1.7 1 1 1 2 2 2 1 Mrr N-terminal domain DUF2250 PF10007.9 gi|292655576|ref|YP_003535473.1| - 0.0017 18.4 0.0 0.0024 17.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF2161 PF09929.9 gi|292655576|ref|YP_003535473.1| - 0.003 17.6 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 Putative PD-(D/E)XK phosphodiesterase (DUF2161) MarR_2 PF12802.7 gi|292655576|ref|YP_003535473.1| - 0.0069 16.3 0.0 0.0091 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|292655576|ref|YP_003535473.1| - 0.053 13.2 0.0 0.053 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AbiEi_4 PF13338.6 gi|292655576|ref|YP_003535473.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin DUF3052 PF11253.8 gi|292655578|ref|YP_003535475.1| - 0.046 13.6 0.6 0.072 13.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) Gly-zipper_Omp PF13488.6 gi|292655582|ref|YP_003535479.1| - 5.2 7.2 8.9 4.9 7.2 3.4 2.5 2 0 0 2 2 2 0 Glycine zipper CLP1_N PF16573.5 gi|292655584|ref|YP_003535481.1| - 0.061 13.5 0.2 0.29 11.4 0.0 2.1 2 0 0 2 2 2 0 N-terminal beta-sandwich domain of polyadenylation factor UbiA PF01040.18 gi|292655588|ref|YP_003535485.1| - 6.5e-45 153.4 19.3 8.1e-45 153.1 19.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MccV PF17508.2 gi|292655588|ref|YP_003535485.1| - 5.7 7.6 9.6 7.3 7.2 0.7 3.0 3 0 0 3 3 3 0 Microcin V bacteriocin DUF835 PF05763.12 gi|292655589|ref|YP_003535486.1| - 4.7e-05 23.1 0.0 6.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Peptidase_C28 PF05408.11 gi|292655589|ref|YP_003535486.1| - 0.00086 19.1 0.0 0.0097 15.6 0.0 2.0 2 0 0 2 2 2 1 Foot-and-mouth virus L-proteinase PAXNEB PF05625.11 gi|292655589|ref|YP_003535486.1| - 0.0093 15.1 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 1 PAXNEB protein AAA_35 PF14516.6 gi|292655589|ref|YP_003535486.1| - 0.12 11.1 0.0 0.28 10.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain CoA_binding_2 PF13380.6 gi|292655590|ref|YP_003535487.1| - 1.6e-39 135.0 0.1 1.8e-39 134.8 0.1 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|292655590|ref|YP_003535487.1| - 0.00012 22.7 0.0 0.00017 22.2 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain PALP PF00291.25 gi|292655591|ref|YP_003535488.1| - 3.3e-56 190.9 1.4 3.7e-56 190.7 1.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Spc7 PF08317.11 gi|292655592|ref|YP_003535489.1| - 0.00038 19.4 5.9 0.00045 19.2 5.9 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein GldM_N PF12081.8 gi|292655592|ref|YP_003535489.1| - 0.00053 20.1 3.5 0.00055 20.1 3.5 1.1 1 0 0 1 1 1 1 GldM N-terminal domain DegS PF05384.11 gi|292655592|ref|YP_003535489.1| - 0.0043 16.6 4.2 0.0051 16.3 4.2 1.1 1 0 0 1 1 1 1 Sensor protein DegS Ax_dynein_light PF10211.9 gi|292655592|ref|YP_003535489.1| - 0.007 16.3 4.2 0.0087 16.0 4.2 1.1 1 0 0 1 1 1 1 Axonemal dynein light chain Snapin_Pallidin PF14712.6 gi|292655592|ref|YP_003535489.1| - 0.0083 16.5 0.4 0.018 15.5 0.4 1.5 1 0 0 1 1 1 1 Snapin/Pallidin Sec34 PF04136.15 gi|292655592|ref|YP_003535489.1| - 0.01 15.8 0.5 0.013 15.4 0.5 1.1 1 0 0 1 1 1 1 Sec34-like family RmuC PF02646.16 gi|292655592|ref|YP_003535489.1| - 0.011 14.9 1.2 0.014 14.6 1.2 1.1 1 0 0 1 1 1 0 RmuC family DUF1664 PF07889.12 gi|292655592|ref|YP_003535489.1| - 0.012 15.6 0.7 0.015 15.3 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Cep57_CLD_2 PF14197.6 gi|292655592|ref|YP_003535489.1| - 0.014 15.4 5.3 0.044 13.9 5.3 1.8 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 YabA PF06156.13 gi|292655592|ref|YP_003535489.1| - 0.017 15.8 1.0 0.019 15.6 1.0 1.2 1 0 0 1 1 1 0 Initiation control protein YabA LOH1CR12 PF10158.9 gi|292655592|ref|YP_003535489.1| - 0.026 14.5 0.3 0.042 13.9 0.2 1.3 1 1 0 1 1 1 0 Tumour suppressor protein Med9 PF07544.13 gi|292655592|ref|YP_003535489.1| - 0.027 14.6 3.9 0.037 14.1 3.5 1.4 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.9 gi|292655592|ref|YP_003535489.1| - 0.037 13.1 0.6 0.035 13.2 0.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FbpA PF05833.11 gi|292655592|ref|YP_003535489.1| - 0.079 11.7 3.7 0.088 11.5 3.7 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) COG2 PF06148.11 gi|292655592|ref|YP_003535489.1| - 0.083 13.0 1.6 0.098 12.7 1.6 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.12 gi|292655592|ref|YP_003535489.1| - 0.096 12.7 8.6 0.056 13.5 6.4 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Nairo_nucleo PF02477.15 gi|292655592|ref|YP_003535489.1| - 0.14 10.9 1.9 0.15 10.9 1.9 1.1 1 0 0 1 1 1 0 Nucleocapsid N protein FlxA PF14282.6 gi|292655592|ref|YP_003535489.1| - 0.15 12.0 3.2 0.2 11.7 3.2 1.3 1 0 0 1 1 1 0 FlxA-like protein TMPIT PF07851.13 gi|292655592|ref|YP_003535489.1| - 0.19 11.0 1.0 0.21 10.8 1.0 1.0 1 0 0 1 1 1 0 TMPIT-like protein UPF0242 PF06785.11 gi|292655592|ref|YP_003535489.1| - 0.27 11.3 3.0 0.31 11.1 3.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc24 PF08286.11 gi|292655592|ref|YP_003535489.1| - 0.69 10.2 6.0 1.1 9.5 6.0 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.19 gi|292655592|ref|YP_003535489.1| - 1.1 7.1 2.5 1.3 6.9 2.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family XhlA PF10779.9 gi|292655592|ref|YP_003535489.1| - 1.9 8.8 7.8 0.33 11.2 2.6 2.3 2 1 1 3 3 3 0 Haemolysin XhlA ABC2_membrane_3 PF12698.7 gi|292655593|ref|YP_003535490.1| - 3.2e-12 46.2 0.0 4.4e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|292655593|ref|YP_003535490.1| - 5.6e-09 35.7 1.8 5.6e-09 35.7 1.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|292655593|ref|YP_003535490.1| - 0.00029 20.3 6.7 0.00029 20.3 6.7 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|292655593|ref|YP_003535490.1| - 0.00041 20.4 5.0 0.00069 19.6 2.5 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|292655594|ref|YP_003535491.1| - 2.6 7.1 24.6 0.014 14.6 14.8 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|292655595|ref|YP_003535492.1| - 4.2e-28 98.6 0.0 7.7e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655595|ref|YP_003535492.1| - 1.4e-12 48.0 0.0 4.6e-06 26.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|292655595|ref|YP_003535492.1| - 9.6e-07 29.4 0.0 2.1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|292655595|ref|YP_003535492.1| - 1.9e-05 24.5 0.1 0.00075 19.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|292655595|ref|YP_003535492.1| - 0.00038 21.0 0.1 0.00062 20.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292655595|ref|YP_003535492.1| - 0.0042 17.4 0.6 0.019 15.2 0.1 2.2 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|292655595|ref|YP_003535492.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|292655595|ref|YP_003535492.1| - 0.043 13.5 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|292655595|ref|YP_003535492.1| - 0.069 12.9 0.8 0.43 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|292655595|ref|YP_003535492.1| - 0.074 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|292655595|ref|YP_003535492.1| - 0.13 11.7 0.1 2.7 7.3 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292655595|ref|YP_003535492.1| - 0.19 11.5 0.3 0.32 10.8 0.3 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|292655595|ref|YP_003535492.1| - 0.2 12.0 0.5 2.4 8.5 0.1 2.3 3 0 0 3 3 3 0 AAA domain 3HCDH_N PF02737.18 gi|292655596|ref|YP_003535493.1| - 3.4e-62 209.5 0.2 4.5e-62 209.1 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|292655596|ref|YP_003535493.1| - 1.8e-33 115.0 0.7 8.1e-32 109.7 0.0 2.5 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|292655596|ref|YP_003535493.1| - 0.00068 19.8 0.6 0.0011 19.1 0.6 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|292655596|ref|YP_003535493.1| - 0.01 15.2 0.1 0.016 14.6 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|292655596|ref|YP_003535493.1| - 0.038 14.6 0.1 0.082 13.5 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 gi|292655596|ref|YP_003535493.1| - 0.077 12.5 0.8 0.11 12.1 0.8 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase XdhC_C PF13478.6 gi|292655596|ref|YP_003535493.1| - 0.091 13.3 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain HHH_5 PF14520.6 gi|292655597|ref|YP_003535494.1| - 6.5e-07 29.9 0.1 0.0018 18.8 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|292655597|ref|YP_003535494.1| - 2.7e-05 24.4 0.0 0.00012 22.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|292655597|ref|YP_003535494.1| - 0.078 13.2 0.0 1.2 9.4 0.0 2.1 2 0 0 2 2 2 0 Pathogenicity locus DUF1674 PF07896.12 gi|292655597|ref|YP_003535494.1| - 6.4 7.3 11.4 2 9.0 1.2 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1674) FBPase PF00316.20 gi|292655598|ref|YP_003535495.1| - 4.7e-25 88.2 0.0 7.8e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|292655598|ref|YP_003535495.1| - 0.013 15.0 0.1 0.027 14.0 0.0 1.5 2 0 0 2 2 2 0 Inositol monophosphatase family Carboxyl_trans PF01039.22 gi|292655599|ref|YP_003535496.1| - 3.1e-129 431.8 0.0 4e-129 431.5 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain DoxX PF07681.12 gi|292655601|ref|YP_003535498.1| - 1.4e-08 35.2 7.7 3.4e-08 34.0 7.0 1.9 1 1 1 2 2 2 1 DoxX DUF3265 PF11665.8 gi|292655601|ref|YP_003535498.1| - 0.28 11.4 2.6 1.4 9.2 2.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3265) PEP-CTERM PF07589.11 gi|292655601|ref|YP_003535498.1| - 0.31 11.2 6.8 0.39 10.9 0.1 3.2 3 0 0 3 3 3 0 PEP-CTERM motif MaoC_dehydratas PF01575.19 gi|292655602|ref|YP_003535499.1| - 8.2e-26 90.0 0.1 1.1e-25 89.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|292655602|ref|YP_003535499.1| - 9.1e-05 22.6 0.1 0.00054 20.1 0.1 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase ELFV_dehydrog PF00208.21 gi|292655603|ref|YP_003535500.1| - 1.3e-71 241.1 0.0 2e-71 240.6 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|292655603|ref|YP_003535500.1| - 1.3e-55 186.8 0.0 2.4e-55 186.0 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|292655603|ref|YP_003535500.1| - 0.017 14.5 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|292655603|ref|YP_003535500.1| - 0.025 15.0 0.0 0.052 14.0 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Bac_GDH PF05088.12 gi|292655603|ref|YP_003535500.1| - 0.055 11.0 0.1 0.084 10.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase HpcH_HpaI PF03328.14 gi|292655604|ref|YP_003535501.1| - 9.2e-57 191.7 3.5 1.2e-56 191.3 3.5 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|292655604|ref|YP_003535501.1| - 1.5e-09 37.5 0.0 1.1e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ELFV_dehydrog PF00208.21 gi|292655605|ref|YP_003535502.1| - 9.5e-76 254.7 0.0 1.3e-75 254.3 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|292655605|ref|YP_003535502.1| - 2.8e-55 185.7 0.0 5.4e-55 184.8 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|292655605|ref|YP_003535502.1| - 0.00027 20.4 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHH_8 PF14716.6 gi|292655605|ref|YP_003535502.1| - 0.0086 16.4 0.0 0.027 14.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain OTCace_N PF02729.21 gi|292655606|ref|YP_003535503.1| - 6.4e-45 152.8 0.0 1.1e-44 152.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|292655606|ref|YP_003535503.1| - 3.6e-29 101.9 0.0 4.8e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|292655607|ref|YP_003535504.1| - 7e-34 116.0 0.3 9.7e-34 115.5 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|292655607|ref|YP_003535504.1| - 5e-14 51.9 1.1 8.4e-14 51.2 1.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HATPase_c PF02518.26 gi|292655608|ref|YP_003535505.1| - 1.7e-18 67.1 0.0 4.5e-18 65.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292655608|ref|YP_003535505.1| - 1.8e-13 50.7 1.1 5e-13 49.3 0.2 2.3 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|292655608|ref|YP_003535505.1| - 1.1e-12 47.8 0.6 4.5e-12 45.8 0.5 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|292655608|ref|YP_003535505.1| - 2.1e-10 40.6 0.0 4.3e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.24 gi|292655608|ref|YP_003535505.1| - 5.7e-09 36.1 0.1 2.7e-08 34.0 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|292655608|ref|YP_003535505.1| - 1.6e-08 34.8 0.0 4.4e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|292655608|ref|YP_003535505.1| - 8.5e-08 32.4 0.0 1.7e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|292655608|ref|YP_003535505.1| - 3.9e-05 23.6 0.2 0.00017 21.5 0.0 2.0 2 1 0 2 2 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|292655608|ref|YP_003535505.1| - 0.0026 17.9 0.0 0.01 16.0 0.0 2.1 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|292655608|ref|YP_003535505.1| - 0.0034 17.1 0.1 0.0055 16.4 0.1 1.3 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_11 PF14598.6 gi|292655608|ref|YP_003535505.1| - 0.02 15.0 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 PAS domain PAS_8 PF13188.7 gi|292655608|ref|YP_003535505.1| - 0.024 14.7 0.0 0.073 13.1 0.0 1.8 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.6 gi|292655608|ref|YP_003535505.1| - 0.064 13.1 0.2 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_5 PF07310.13 gi|292655608|ref|YP_003535505.1| - 0.12 12.2 0.0 0.41 10.4 0.0 2.0 1 1 0 1 1 1 0 PAS domain DUF4838 PF16126.5 gi|292655609|ref|YP_003535506.1| - 0.022 14.2 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) Glyco_hydro_42 PF02449.15 gi|292655609|ref|YP_003535506.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Beta-galactosidase ThuA PF06283.11 gi|292655611|ref|YP_003535508.1| - 3.3e-35 122.2 0.2 4e-35 122.0 0.2 1.0 1 0 0 1 1 1 1 Trehalose utilisation ECH_1 PF00378.20 gi|292655612|ref|YP_003535509.1| - 1.3e-44 152.4 0.0 1.5e-44 152.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|292655612|ref|YP_003535509.1| - 1.8e-27 96.8 0.2 4e-27 95.6 0.2 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase MR_MLE_C PF13378.6 gi|292655613|ref|YP_003535510.1| - 3.1e-47 161.0 5.8 5.5e-47 160.2 5.8 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|292655613|ref|YP_003535510.1| - 0.0014 18.8 1.3 0.004 17.3 1.3 1.8 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|292655614|ref|YP_003535511.1| - 1.2e-36 126.3 22.7 1.5e-36 126.0 22.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Pyr_redox_2 PF07992.14 gi|292655615|ref|YP_003535512.1| - 7.2e-05 22.1 0.3 0.00028 20.2 0.2 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|292655615|ref|YP_003535512.1| - 8.8e-05 21.9 0.2 0.00018 20.9 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|292655615|ref|YP_003535512.1| - 0.014 15.6 0.1 0.033 14.4 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|292655615|ref|YP_003535512.1| - 0.086 12.1 0.1 3.2 6.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|292655615|ref|YP_003535512.1| - 0.12 11.5 0.3 0.18 10.8 0.3 1.4 1 1 0 1 1 1 0 Glucose inhibited division protein A Peripla_BP_2 PF01497.18 gi|292655616|ref|YP_003535513.1| - 1.1e-25 90.5 0.0 2.1e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|292655616|ref|YP_003535513.1| - 0.0093 15.8 0.3 0.023 14.5 0.3 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ECH_1 PF00378.20 gi|292655617|ref|YP_003535514.1| - 3.1e-54 183.9 0.0 5e-53 180.0 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|292655617|ref|YP_003535514.1| - 4e-16 59.4 0.1 1.8e-15 57.3 0.0 1.9 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase CAP PF00188.26 gi|292655617|ref|YP_003535514.1| - 0.13 13.1 0.1 0.55 11.1 0.0 1.9 2 0 0 2 2 2 0 Cysteine-rich secretory protein family BMC PF00936.19 gi|292655617|ref|YP_003535514.1| - 0.18 11.8 0.1 21 5.2 0.0 3.0 2 1 1 3 3 3 0 BMC domain CopD PF05425.13 gi|292655618|ref|YP_003535515.1| - 4.5e-06 27.0 10.7 4.5e-06 27.0 10.7 2.1 2 0 0 2 2 2 2 Copper resistance protein D DUF485 PF04341.12 gi|292655619|ref|YP_003535516.1| - 0.071 13.1 0.8 0.071 13.1 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF485 ATP-synt_J PF04911.12 gi|292655620|ref|YP_003535517.1| - 0.28 10.8 2.8 2 8.1 0.7 2.8 2 1 1 3 3 3 0 ATP synthase j chain TPP_enzyme_N PF02776.18 gi|292655621|ref|YP_003535518.1| - 3.8e-36 124.3 0.7 6.3e-36 123.6 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|292655621|ref|YP_003535518.1| - 6.3e-11 42.4 0.0 8.8e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|292655621|ref|YP_003535518.1| - 4.2e-08 33.1 0.0 1.1e-07 31.8 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TrbC_Ftype PF09673.10 gi|292655621|ref|YP_003535518.1| - 0.022 14.8 0.1 2 8.5 0.0 2.6 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein adh_short PF00106.25 gi|292655621|ref|YP_003535518.1| - 0.069 12.6 0.0 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292655621|ref|YP_003535518.1| - 0.1 12.1 0.1 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase DUF4853 PF16145.5 gi|292655621|ref|YP_003535518.1| - 0.11 12.6 0.0 4.1 7.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4853) Chorismate_bind PF00425.18 gi|292655622|ref|YP_003535519.1| - 4.6e-73 246.0 0.0 5.9e-73 245.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.19 gi|292655623|ref|YP_003535520.1| - 9.7e-37 126.2 0.0 1.2e-36 125.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain IclR PF01614.18 gi|292655624|ref|YP_003535521.1| - 0.089 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator UPF0058 PF01893.16 gi|292655625|ref|YP_003535522.1| - 5.8e-33 113.0 0.7 6.4e-33 112.9 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 T7SS_ESX_EspC PF10824.8 gi|292655625|ref|YP_003535522.1| - 0.029 14.9 0.0 0.04 14.4 0.0 1.2 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm Rhomboid PF01694.22 gi|292655626|ref|YP_003535523.1| - 1.3e-09 38.3 15.4 1.3e-09 38.3 15.4 2.4 2 1 0 2 2 2 1 Rhomboid family YqjK PF13997.6 gi|292655626|ref|YP_003535523.1| - 0.036 14.3 1.8 0.21 11.8 1.8 2.4 1 0 0 1 1 1 0 YqjK-like protein PSI_PsaE PF02427.17 gi|292655626|ref|YP_003535523.1| - 0.081 12.6 0.1 3.2 7.5 0.1 2.7 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IV / PsaE MTS PF05175.14 gi|292655627|ref|YP_003535524.1| - 3.9e-10 39.5 0.0 5.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|292655627|ref|YP_003535524.1| - 5.6e-10 39.1 0.0 7.7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|292655627|ref|YP_003535524.1| - 3.6e-09 36.6 0.1 2e-08 34.1 0.1 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|292655627|ref|YP_003535524.1| - 8.4e-09 36.0 0.1 2e-08 34.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|292655627|ref|YP_003535524.1| - 6.7e-07 29.0 0.1 9e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|292655627|ref|YP_003535524.1| - 8.5e-07 28.9 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292655627|ref|YP_003535524.1| - 3.1e-06 27.7 0.0 6.3e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292655627|ref|YP_003535524.1| - 8.1e-05 22.1 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|292655627|ref|YP_003535524.1| - 0.0015 18.5 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|292655627|ref|YP_003535524.1| - 0.0039 17.0 0.0 0.0053 16.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.9 gi|292655627|ref|YP_003535524.1| - 0.0045 16.8 0.1 0.0067 16.2 0.1 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_15 PF09445.10 gi|292655627|ref|YP_003535524.1| - 0.005 16.4 0.0 0.0065 16.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DOT1 PF08123.13 gi|292655627|ref|YP_003535524.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|292655627|ref|YP_003535524.1| - 0.022 13.8 0.0 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|292655627|ref|YP_003535524.1| - 0.023 14.0 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PALP PF00291.25 gi|292655627|ref|YP_003535524.1| - 0.031 13.7 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DUF43 PF01861.16 gi|292655627|ref|YP_003535524.1| - 0.077 12.2 0.0 0.14 11.3 0.0 1.4 2 0 0 2 2 2 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_4 PF02390.17 gi|292655627|ref|YP_003535524.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.6 gi|292655627|ref|YP_003535524.1| - 0.15 11.9 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain STAS_2 PF13466.6 gi|292655628|ref|YP_003535525.1| - 0.0016 18.7 4.7 0.012 16.0 1.5 2.3 2 0 0 2 2 2 1 STAS domain AP_endonuc_2 PF01261.24 gi|292655628|ref|YP_003535525.1| - 0.035 13.6 0.1 0.042 13.3 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CAP59_mtransfer PF11735.8 gi|292655628|ref|YP_003535525.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 LTD PF00932.19 gi|292655629|ref|YP_003535526.1| - 7.8e-24 84.2 2.8 7.8e-24 84.2 2.8 2.0 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|292655629|ref|YP_003535526.1| - 9.4e-21 74.3 0.0 1.6e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue TFIIB PF00382.19 gi|292655630|ref|YP_003535527.1| - 3.5e-44 148.7 1.5 4.9e-24 84.2 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292655630|ref|YP_003535527.1| - 6.8e-19 67.1 1.5 1.1e-18 66.4 1.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|292655630|ref|YP_003535527.1| - 0.00067 19.3 0.3 0.0012 18.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|292655630|ref|YP_003535527.1| - 0.00075 19.1 1.5 0.0016 18.1 1.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|292655630|ref|YP_003535527.1| - 0.0079 16.3 1.6 0.4 10.8 0.3 2.5 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292655630|ref|YP_003535527.1| - 0.01 15.7 0.4 0.029 14.3 0.3 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain Sigma70_r4 PF04545.16 gi|292655630|ref|YP_003535527.1| - 0.014 14.9 1.0 0.36 10.4 0.1 3.4 3 1 0 3 3 3 0 Sigma-70, region 4 zf-ribbon_3 PF13248.6 gi|292655630|ref|YP_003535527.1| - 0.015 14.7 3.8 0.21 11.1 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|292655630|ref|YP_003535527.1| - 0.03 14.3 1.7 0.062 13.3 1.7 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|292655630|ref|YP_003535527.1| - 0.047 13.8 0.0 0.36 10.9 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-RRN7 PF11781.8 gi|292655630|ref|YP_003535527.1| - 0.052 13.2 1.1 0.091 12.5 1.1 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|292655630|ref|YP_003535527.1| - 0.076 13.4 0.2 0.2 12.1 0.2 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|292655630|ref|YP_003535527.1| - 0.081 12.8 0.4 0.74 9.7 0.1 2.8 3 0 0 3 3 2 0 Homeodomain-like domain DZR PF12773.7 gi|292655630|ref|YP_003535527.1| - 0.12 12.5 0.5 0.26 11.4 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon HTH_3 PF01381.22 gi|292655630|ref|YP_003535527.1| - 0.12 12.4 0.1 7.4 6.7 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix Trm112p PF03966.16 gi|292655630|ref|YP_003535527.1| - 0.19 12.4 0.3 0.63 10.7 0.3 1.9 1 0 0 1 1 1 0 Trm112p-like protein DUF1178 PF06676.11 gi|292655630|ref|YP_003535527.1| - 0.35 11.3 2.8 21 5.5 2.8 3.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1178) zf-trcl PF13451.6 gi|292655630|ref|YP_003535527.1| - 3 7.8 6.2 1.6 8.7 0.5 2.5 1 1 1 2 2 2 0 Probable zinc-ribbon domain PMT_2 PF13231.6 gi|292655631|ref|YP_003535528.1| - 1.9e-06 28.2 4.8 1.9e-06 28.2 4.8 3.0 3 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Importin_rep_4 PF18808.1 gi|292655632|ref|YP_003535529.1| - 0.13 12.5 1.7 2 8.8 1.7 2.0 1 1 0 1 1 1 0 Importin repeat Usp PF00582.26 gi|292655633|ref|YP_003535530.1| - 5.6e-38 130.6 2.3 5.6e-38 130.6 2.3 1.3 2 0 0 2 2 2 1 Universal stress protein family ADH_zinc_N PF00107.26 gi|292655633|ref|YP_003535530.1| - 0.031 14.3 0.2 0.04 13.9 0.2 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Fer2 PF00111.27 gi|292655634|ref|YP_003535531.1| - 1.6e-11 44.0 2.4 2e-11 43.7 2.4 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|292655634|ref|YP_003535531.1| - 0.0097 15.9 0.1 0.01 15.8 0.1 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Lactamase_B PF00753.27 gi|292655635|ref|YP_003535532.1| - 4.3e-12 46.4 0.7 7.9e-12 45.6 0.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|292655635|ref|YP_003535532.1| - 2.9e-10 40.6 0.0 6e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|292655635|ref|YP_003535532.1| - 0.022 14.3 0.8 0.022 14.3 0.8 2.2 2 1 1 3 3 3 0 Beta-lactamase superfamily domain MCPsignal PF00015.21 gi|292655636|ref|YP_003535533.1| - 1.4e-43 148.7 44.5 3.2e-40 137.8 22.4 3.3 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|292655636|ref|YP_003535533.1| - 1.1e-24 87.1 0.1 5.9e-22 78.3 0.0 2.9 3 0 0 3 3 3 1 Protoglobin DUF948 PF06103.11 gi|292655636|ref|YP_003535533.1| - 9.6e-06 25.8 24.8 0.01 16.1 0.4 4.4 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|292655636|ref|YP_003535533.1| - 0.14 12.2 18.2 1.1 9.3 1.1 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|292655636|ref|YP_003535533.1| - 0.25 11.7 7.6 1.2 9.6 0.1 4.0 4 0 0 4 4 3 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|292655636|ref|YP_003535533.1| - 0.28 11.5 14.2 0.28 11.5 1.1 4.0 3 1 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 T7SS_ESX_EspC PF10824.8 gi|292655636|ref|YP_003535533.1| - 0.54 10.8 36.6 2.3 8.7 4.2 4.8 1 1 2 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm CorA PF01544.18 gi|292655636|ref|YP_003535533.1| - 0.68 9.2 17.2 0.5 9.6 7.7 3.2 2 2 0 3 3 3 0 CorA-like Mg2+ transporter protein FlgN PF05130.12 gi|292655636|ref|YP_003535533.1| - 0.76 10.3 17.8 3.5 8.1 0.2 3.4 1 1 1 3 3 3 0 FlgN protein COG6 PF06419.11 gi|292655636|ref|YP_003535533.1| - 0.81 7.8 8.7 0.25 9.5 1.3 2.4 2 1 0 2 2 2 0 Conserved oligomeric complex COG6 BDV_P24 PF06595.11 gi|292655636|ref|YP_003535533.1| - 0.92 9.3 10.7 0.11 12.3 0.4 2.9 2 1 1 3 3 3 0 Borna disease virus P24 protein DUF812 PF05667.11 gi|292655636|ref|YP_003535533.1| - 0.95 8.3 17.6 0.36 9.6 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) GvpG PF05120.12 gi|292655636|ref|YP_003535533.1| - 1 9.4 8.1 14 5.8 1.0 3.7 2 1 1 3 3 3 0 Gas vesicle protein G Tup_N PF08581.10 gi|292655636|ref|YP_003535533.1| - 1.2 9.4 4.3 1 9.7 0.1 2.8 3 0 0 3 3 3 0 Tup N-terminal TMPIT PF07851.13 gi|292655636|ref|YP_003535533.1| - 1.5 8.0 5.7 0.52 9.5 0.8 2.2 2 1 0 2 2 2 0 TMPIT-like protein FH2 PF02181.23 gi|292655636|ref|YP_003535533.1| - 1.8 7.6 7.3 0.93 8.5 2.4 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain Mce4_CUP1 PF11887.8 gi|292655636|ref|YP_003535533.1| - 1.9 7.9 11.7 0.74 9.2 0.7 2.6 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DASH_Dad2 PF08654.10 gi|292655636|ref|YP_003535533.1| - 2.1 8.8 13.7 1.4 9.4 0.3 4.2 1 1 3 4 4 4 0 DASH complex subunit Dad2 Nup88 PF10168.9 gi|292655636|ref|YP_003535533.1| - 2.8 5.7 7.2 1.3 6.7 4.6 1.6 1 1 0 1 1 1 0 Nuclear pore component Laminin_II PF06009.12 gi|292655636|ref|YP_003535533.1| - 3.5 7.6 27.9 5.1 7.1 0.6 4.5 2 2 3 5 5 5 0 Laminin Domain II Kre28 PF17097.5 gi|292655636|ref|YP_003535533.1| - 9.3 5.1 11.6 6.1 5.7 0.1 2.4 1 1 0 2 2 2 0 Spindle pole body component Rubrerythrin PF02915.17 gi|292655637|ref|YP_003535534.1| - 0.0044 17.4 0.5 0.013 15.9 0.4 1.8 2 0 0 2 2 2 1 Rubrerythrin MOSC PF03473.17 gi|292655638|ref|YP_003535535.1| - 6.3e-05 23.0 0.0 0.0001 22.3 0.0 1.3 1 0 0 1 1 1 1 MOSC domain PAS_4 PF08448.10 gi|292655638|ref|YP_003535535.1| - 0.013 15.8 0.1 0.031 14.5 0.1 1.7 1 0 0 1 1 1 0 PAS fold GalKase_gal_bdg PF10509.9 gi|292655639|ref|YP_003535536.1| - 2.5e-16 59.0 0.2 5.6e-16 57.8 0.2 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.13 gi|292655639|ref|YP_003535536.1| - 1.1e-15 57.7 0.2 3e-15 56.4 0.2 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|292655639|ref|YP_003535536.1| - 1e-10 41.7 2.2 1e-10 41.7 2.2 2.9 4 0 0 4 4 4 1 GHMP kinases N terminal domain HXXSHH PF07586.11 gi|292655639|ref|YP_003535536.1| - 0.28 10.7 2.4 0.41 10.2 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) MR_MLE_C PF13378.6 gi|292655640|ref|YP_003535537.1| - 6.6e-56 189.3 0.6 9.2e-56 188.9 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|292655640|ref|YP_003535537.1| - 4.1e-14 52.8 0.1 1.8e-13 50.7 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.6 gi|292655640|ref|YP_003535537.1| - 0.019 14.7 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Amidohydro_2 PF04909.14 gi|292655640|ref|YP_003535537.1| - 0.038 13.8 1.0 0.066 13.0 0.3 1.7 2 0 0 2 2 2 0 Amidohydrolase DUF5519 PF17648.1 gi|292655641|ref|YP_003535538.1| - 1.4e-37 128.1 0.4 1.7e-37 127.9 0.4 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5519) Hydrolase_3 PF08282.12 gi|292655643|ref|YP_003535540.1| - 1.5e-10 41.3 0.0 0.00024 20.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292655643|ref|YP_003535540.1| - 0.0012 19.3 1.1 1.5 9.2 0.0 2.6 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|292655643|ref|YP_003535540.1| - 0.0019 17.8 0.1 0.11 12.0 0.0 2.4 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|292655643|ref|YP_003535540.1| - 0.0034 17.7 1.2 0.03 14.6 0.1 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase RHH_1 PF01402.21 gi|292655645|ref|YP_003535542.1| - 0.003 17.4 3.9 0.0039 17.1 0.5 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|292655645|ref|YP_003535542.1| - 0.0086 16.8 0.1 0.01 16.6 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin F_bP_aldolase PF01116.20 gi|292655646|ref|YP_003535543.1| - 7.1e-76 255.3 0.0 8e-76 255.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PEP_hydrolase PF09370.10 gi|292655646|ref|YP_003535543.1| - 0.004 16.4 0.3 0.062 12.5 0.0 2.4 2 1 0 2 2 2 1 Phosphoenolpyruvate hydrolase-like PTS_IIB PF02302.17 gi|292655647|ref|YP_003535544.1| - 2.6e-16 60.1 0.8 4.6e-16 59.3 0.8 1.4 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 gi|292655648|ref|YP_003535545.1| - 2.2e-102 342.2 0.0 2.9e-102 341.8 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|292655648|ref|YP_003535545.1| - 1.8e-26 92.6 0.2 1.8e-26 92.6 0.2 2.3 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|292655648|ref|YP_003535545.1| - 9.2e-25 86.2 0.7 2.7e-24 84.7 0.4 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 gi|292655649|ref|YP_003535546.1| - 9.2e-26 89.9 0.1 1e-25 89.8 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site Calpain_inhib PF00748.19 gi|292655649|ref|YP_003535546.1| - 0.083 13.4 0.2 0.095 13.2 0.2 1.1 1 0 0 1 1 1 0 Calpain inhibitor PTS_EIIA_2 PF00359.22 gi|292655650|ref|YP_003535547.1| - 8.7e-36 123.0 0.0 9.7e-36 122.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RNA_pol_Rpb2_2 PF04561.14 gi|292655650|ref|YP_003535547.1| - 0.005 16.5 0.6 1.3 8.6 0.0 2.1 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 Band_3_cyto PF07565.13 gi|292655650|ref|YP_003535547.1| - 0.051 13.4 0.0 0.072 12.9 0.0 1.2 1 0 0 1 1 1 0 Band 3 cytoplasmic domain Erythro-docking PF09277.11 gi|292655650|ref|YP_003535547.1| - 0.86 9.5 4.5 2.4 8.1 1.3 2.3 2 0 0 2 2 2 0 Erythronolide synthase, docking PTS_EIIC PF02378.18 gi|292655651|ref|YP_003535548.1| - 1.2e-19 70.6 45.5 5e-19 68.5 44.4 2.0 1 1 0 1 1 1 1 Phosphotransferase system, EIIC Wzz PF02706.15 gi|292655651|ref|YP_003535548.1| - 2.9 8.2 5.2 31 5.0 0.0 3.5 3 0 0 3 3 3 0 Chain length determinant protein PfkB PF00294.24 gi|292655652|ref|YP_003535549.1| - 1e-50 172.8 3.1 1.5e-50 172.2 3.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|292655652|ref|YP_003535549.1| - 6.6e-05 22.4 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoRC PF00455.22 gi|292655653|ref|YP_003535550.1| - 1.8e-51 174.2 0.0 2.3e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|292655653|ref|YP_003535550.1| - 1e-16 60.4 0.2 1.9e-16 59.6 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|292655653|ref|YP_003535550.1| - 2.3e-07 30.6 0.1 4e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292655653|ref|YP_003535550.1| - 8.1e-07 28.9 0.1 1.9e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|292655653|ref|YP_003535550.1| - 2.5e-06 26.9 2.0 5e-05 22.8 0.3 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292655653|ref|YP_003535550.1| - 5.4e-06 26.2 0.8 1.6e-05 24.7 0.2 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|292655653|ref|YP_003535550.1| - 7.3e-06 26.0 0.2 2.1e-05 24.5 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|292655653|ref|YP_003535550.1| - 3.1e-05 23.8 0.0 7.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|292655653|ref|YP_003535550.1| - 4.5e-05 23.0 0.1 0.00013 21.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|292655653|ref|YP_003535550.1| - 0.00024 20.9 0.0 0.00057 19.7 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292655653|ref|YP_003535550.1| - 0.0003 20.5 0.1 0.00065 19.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292655653|ref|YP_003535550.1| - 0.00031 20.7 0.1 0.00066 19.6 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|292655653|ref|YP_003535550.1| - 0.00044 20.1 0.0 0.0009 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|292655653|ref|YP_003535550.1| - 0.00055 19.8 0.1 0.015 15.2 0.0 2.5 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_23 PF13384.6 gi|292655653|ref|YP_003535550.1| - 0.005 16.6 0.1 0.012 15.4 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain DUF505 PF04458.12 gi|292655653|ref|YP_003535550.1| - 0.035 12.5 0.0 0.047 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2250 PF10007.9 gi|292655653|ref|YP_003535550.1| - 0.042 14.0 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.6 gi|292655653|ref|YP_003535550.1| - 0.045 13.9 0.1 0.12 12.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|292655653|ref|YP_003535550.1| - 0.055 13.2 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DprA_WH PF17782.1 gi|292655653|ref|YP_003535550.1| - 0.071 13.2 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 DprA winged helix domain Fe_dep_repress PF01325.19 gi|292655653|ref|YP_003535550.1| - 0.12 12.5 0.1 0.32 11.2 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|292655653|ref|YP_003535550.1| - 0.44 10.4 2.6 6.3 6.7 0.2 3.1 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Iso_dh PF00180.20 gi|292655654|ref|YP_003535551.1| - 9.3e-87 291.4 0.0 1.1e-86 291.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|292655655|ref|YP_003535552.1| - 3.3e-20 72.7 0.0 5e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain HAD PF12710.7 gi|292655655|ref|YP_003535552.1| - 0.031 14.7 0.0 0.042 14.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Aconitase PF00330.20 gi|292655656|ref|YP_003535553.1| - 1.4e-147 492.4 0.1 1.6e-147 492.2 0.1 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) IlvN PF07991.12 gi|292655658|ref|YP_003535555.1| - 1.4e-69 232.9 0.3 1.9e-69 232.5 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|292655658|ref|YP_003535555.1| - 4.8e-63 211.7 0.1 7.1e-63 211.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|292655658|ref|YP_003535555.1| - 8.9e-09 35.8 0.2 1.9e-08 34.8 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|292655658|ref|YP_003535555.1| - 5.2e-07 29.2 0.0 9.7e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|292655658|ref|YP_003535555.1| - 1.4e-05 25.3 0.0 2.7e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|292655658|ref|YP_003535555.1| - 0.005 16.5 0.0 0.0082 15.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|292655658|ref|YP_003535555.1| - 0.0078 16.6 0.3 0.084 13.3 0.1 2.5 3 0 0 3 3 3 1 Putative NAD(P)-binding Mur_ligase PF01225.25 gi|292655658|ref|YP_003535555.1| - 0.019 15.3 0.6 0.046 14.0 0.6 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain 3HCDH_N PF02737.18 gi|292655658|ref|YP_003535555.1| - 0.02 14.8 0.2 0.038 13.9 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|292655658|ref|YP_003535555.1| - 0.057 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding_2 PF13380.6 gi|292655658|ref|YP_003535555.1| - 0.059 13.9 1.5 0.2 12.1 0.3 2.4 2 1 1 3 3 3 0 CoA binding domain Oxidored_nitro PF00148.19 gi|292655658|ref|YP_003535555.1| - 0.11 11.2 0.1 0.12 11.1 0.1 1.4 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase GFO_IDH_MocA PF01408.22 gi|292655658|ref|YP_003535555.1| - 0.12 13.2 0.1 0.26 12.1 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ThiF PF00899.21 gi|292655658|ref|YP_003535555.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 ThiF family GARS_N PF02844.15 gi|292655658|ref|YP_003535555.1| - 0.14 13.0 0.2 2.5 8.9 0.2 2.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain ALS_ss_C PF10369.9 gi|292655659|ref|YP_003535556.1| - 6.8e-20 71.1 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|292655659|ref|YP_003535556.1| - 1.1e-14 54.0 0.0 1.1e-13 50.7 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|292655659|ref|YP_003535556.1| - 9.7e-11 41.3 0.2 3.4e-10 39.5 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|292655659|ref|YP_003535556.1| - 0.02 14.9 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.6 gi|292655659|ref|YP_003535556.1| - 0.04 14.5 0.0 0.073 13.7 0.0 1.5 1 0 0 1 1 1 0 ACT domain MCR PF18509.1 gi|292655659|ref|YP_003535556.1| - 1.8 8.2 5.8 0.43 10.2 2.1 1.9 2 0 0 2 2 2 0 Magnetochrome domain TPP_enzyme_N PF02776.18 gi|292655660|ref|YP_003535557.1| - 3.1e-50 170.1 0.7 1.5e-49 167.9 0.7 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|292655660|ref|YP_003535557.1| - 7.1e-50 168.8 0.8 1.3e-49 167.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|292655660|ref|YP_003535557.1| - 6e-45 152.3 0.1 1.5e-44 151.1 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|292655660|ref|YP_003535557.1| - 0.0015 18.3 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DUF953 PF06110.11 gi|292655660|ref|YP_003535557.1| - 0.089 12.4 0.1 5.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) HMGL-like PF00682.19 gi|292655662|ref|YP_003535559.1| - 2.8e-82 276.2 8.9 4.4e-82 275.6 8.9 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|292655662|ref|YP_003535559.1| - 0.00072 19.1 2.9 0.0023 17.4 1.0 2.3 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|292655662|ref|YP_003535559.1| - 0.0015 18.9 0.4 0.0065 16.9 0.1 2.2 2 1 0 2 2 2 1 Radical SAM superfamily RHH_1 PF01402.21 gi|292655667|ref|YP_003535564.1| - 0.0025 17.7 0.1 0.0055 16.6 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2795 PF11387.8 gi|292655668|ref|YP_003535565.1| - 0.038 14.2 0.5 0.33 11.2 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2795) Glycos_transf_2 PF00535.26 gi|292655669|ref|YP_003535566.1| - 2.2e-16 60.1 0.0 3.5e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292655669|ref|YP_003535566.1| - 1.1e-05 25.5 0.0 1.5e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|292655669|ref|YP_003535566.1| - 2.4e-05 24.7 0.0 4.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 SfLAP PF11139.8 gi|292655669|ref|YP_003535566.1| - 0.003 17.0 0.1 0.0045 16.5 0.1 1.2 1 0 0 1 1 1 1 Sap, sulfolipid-1-addressing protein NTP_transf_3 PF12804.7 gi|292655669|ref|YP_003535566.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain Methyltransf_21 PF05050.12 gi|292655671|ref|YP_003535568.1| - 2.3e-15 57.0 0.0 3.8e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|292655671|ref|YP_003535568.1| - 0.043 13.6 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein CHASE2 PF05226.11 gi|292655672|ref|YP_003535569.1| - 0.073 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 CHASE2 domain Glycos_transf_2 PF00535.26 gi|292655673|ref|YP_003535570.1| - 8.5e-34 116.8 0.0 1.2e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292655673|ref|YP_003535570.1| - 1.7e-19 70.6 0.0 2.2e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|292655673|ref|YP_003535570.1| - 8.5e-11 41.8 0.0 1.4e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|292655673|ref|YP_003535570.1| - 6.1e-07 29.6 0.0 7.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|292655673|ref|YP_003535570.1| - 0.071 13.6 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.6 gi|292655674|ref|YP_003535571.1| - 9.1e-18 64.7 14.3 9.1e-18 64.7 14.3 4.4 1 1 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|292655674|ref|YP_003535571.1| - 2.4e-15 56.5 7.4 2.4e-15 56.5 7.4 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|292655674|ref|YP_003535571.1| - 7.3e-09 34.7 13.2 7.3e-09 34.7 13.2 1.9 2 0 0 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|292655674|ref|YP_003535571.1| - 0.00013 21.7 5.4 0.00013 21.7 5.4 3.2 2 2 0 2 2 2 1 MatE FUSC-like PF12805.7 gi|292655674|ref|YP_003535571.1| - 0.0035 16.5 1.4 0.0035 16.5 1.4 2.9 3 1 1 4 4 4 1 FUSC-like inner membrane protein yccS Mannosyl_trans4 PF15971.5 gi|292655676|ref|YP_003535573.1| - 2.3e-78 261.7 2.7 2.3e-78 261.7 2.7 1.9 2 0 0 2 2 2 1 DolP-mannose mannosyltransferase NTP_transferase PF00483.23 gi|292655677|ref|YP_003535574.1| - 4.3e-43 147.7 0.0 4.8e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|292655677|ref|YP_003535574.1| - 1e-14 55.2 0.0 1.2e-14 55.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|292655677|ref|YP_003535574.1| - 3.4e-06 27.0 0.0 9.4e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|292655678|ref|YP_003535575.1| - 1.6e-28 99.6 0.2 2.1e-28 99.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292655678|ref|YP_003535575.1| - 2.2e-22 80.1 0.1 2.7e-22 79.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|292655678|ref|YP_003535575.1| - 7.5e-13 48.6 0.0 1.5e-11 44.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|292655678|ref|YP_003535575.1| - 3.7e-06 27.0 0.0 4.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|292655678|ref|YP_003535575.1| - 5.5e-06 26.0 0.0 8.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|292655678|ref|YP_003535575.1| - 0.028 14.9 0.1 0.051 14.1 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|292655679|ref|YP_003535576.1| - 4.9e-23 81.8 0.1 7.9e-23 81.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292655679|ref|YP_003535576.1| - 1.8e-13 50.9 0.0 2.8e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|292655679|ref|YP_003535576.1| - 3.2e-08 33.4 0.2 9.7e-08 31.8 0.2 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|292655679|ref|YP_003535576.1| - 0.011 15.6 0.6 0.019 14.9 0.1 1.7 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Glyco_transf_64 PF09258.10 gi|292655679|ref|YP_003535576.1| - 0.063 12.5 0.0 0.097 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain AglB_L1 PF18079.1 gi|292655680|ref|YP_003535577.1| - 3.8e-19 68.8 6.1 3.8e-19 68.8 6.1 1.9 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|292655680|ref|YP_003535577.1| - 3.8e-19 69.0 23.1 1.3e-16 60.7 23.1 2.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|292655680|ref|YP_003535577.1| - 0.0024 18.1 0.2 0.0024 18.1 0.2 4.2 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF423 PF04241.15 gi|292655680|ref|YP_003535577.1| - 0.29 11.3 2.8 2.6 8.3 0.2 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF423) UDPG_MGDP_dh_N PF03721.14 gi|292655681|ref|YP_003535578.1| - 7.1e-54 182.2 0.1 1.8e-53 180.9 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|292655681|ref|YP_003535578.1| - 8.6e-35 118.8 0.0 1.7e-34 117.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|292655681|ref|YP_003535578.1| - 1.9e-27 95.7 0.3 3.8e-27 94.8 0.3 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|292655681|ref|YP_003535578.1| - 2.4e-06 28.0 0.2 0.51 11.0 0.0 3.7 3 1 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|292655681|ref|YP_003535578.1| - 1.1e-05 25.4 0.0 2.6e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|292655681|ref|YP_003535578.1| - 0.0011 18.9 0.0 0.0037 17.2 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|292655681|ref|YP_003535578.1| - 0.0062 15.9 0.2 0.71 9.2 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|292655681|ref|YP_003535578.1| - 0.0077 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|292655681|ref|YP_003535578.1| - 0.013 15.7 1.9 0.1 12.9 0.0 3.2 4 0 0 4 4 4 0 TrkA-N domain Pyr_redox PF00070.27 gi|292655681|ref|YP_003535578.1| - 0.02 15.4 0.2 0.066 13.8 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CHASE2 PF05226.11 gi|292655681|ref|YP_003535578.1| - 0.038 13.7 0.8 2.9 7.5 0.2 2.3 2 1 0 2 2 2 0 CHASE2 domain HTH_26 PF13443.6 gi|292655681|ref|YP_003535578.1| - 0.049 14.1 0.0 0.096 13.1 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Pyr_redox_2 PF07992.14 gi|292655681|ref|YP_003535578.1| - 0.055 12.7 0.1 0.093 11.9 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|292655681|ref|YP_003535578.1| - 0.08 13.1 0.0 3.1 8.0 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|292655681|ref|YP_003535578.1| - 0.12 12.2 0.4 0.5 10.2 0.0 2.2 3 0 0 3 3 3 0 Rossmann-like domain DUF368 PF04018.13 gi|292655682|ref|YP_003535579.1| - 1.2e-63 215.0 16.8 1.2e-63 215.0 16.8 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) Nucleoporin_FG2 PF15967.5 gi|292655682|ref|YP_003535579.1| - 0.012 14.2 2.5 0.014 13.9 2.5 1.1 1 0 0 1 1 1 0 Nucleoporin FG repeated region HypA PF01155.19 gi|292655683|ref|YP_003535580.1| - 0.0015 18.6 0.3 0.0015 18.6 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|292655683|ref|YP_003535580.1| - 0.002 18.2 3.1 0.0038 17.3 3.1 1.4 1 1 0 1 1 1 1 Zinc ribbon domain TackOD1 PF18551.1 gi|292655683|ref|YP_003535580.1| - 0.0035 17.0 0.6 0.0035 17.0 0.6 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn_Tnp_IS1595 PF12760.7 gi|292655683|ref|YP_003535580.1| - 0.0041 17.1 1.3 0.66 10.0 0.2 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2039 PF10217.9 gi|292655683|ref|YP_003535580.1| - 0.0041 17.4 0.2 0.0045 17.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2039) DZR PF12773.7 gi|292655683|ref|YP_003535580.1| - 0.0062 16.5 0.8 0.0076 16.3 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|292655683|ref|YP_003535580.1| - 0.017 15.2 0.5 0.021 14.9 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|292655683|ref|YP_003535580.1| - 0.021 14.8 0.2 0.022 14.7 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons Prim_Zn_Ribbon PF08273.12 gi|292655683|ref|YP_003535580.1| - 0.023 14.9 1.1 0.45 10.8 0.2 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1451 PF07295.11 gi|292655683|ref|YP_003535580.1| - 0.036 14.1 0.5 0.042 13.9 0.5 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Stomagen PF16851.5 gi|292655683|ref|YP_003535580.1| - 0.037 14.0 0.7 0.037 14.0 0.7 1.8 1 1 1 2 2 2 0 Stomagen zf-H2C2_2 PF13465.6 gi|292655683|ref|YP_003535580.1| - 0.06 13.8 0.8 2 9.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Mcm10 PF09332.11 gi|292655683|ref|YP_003535580.1| - 0.086 12.2 0.3 0.09 12.2 0.3 1.0 1 0 0 1 1 1 0 Mcm10 replication factor zf-HC2 PF13490.6 gi|292655683|ref|YP_003535580.1| - 0.31 11.3 1.1 0.31 11.3 1.1 2.1 2 0 0 2 2 2 0 Putative zinc-finger RNA_POL_M_15KD PF02150.16 gi|292655683|ref|YP_003535580.1| - 0.58 10.1 4.1 2.3 8.2 0.3 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Methyltransf_11 PF08241.12 gi|292655684|ref|YP_003535581.1| - 1.5e-19 70.5 0.1 2.7e-19 69.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292655684|ref|YP_003535581.1| - 3.1e-18 66.3 0.0 5.2e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655684|ref|YP_003535581.1| - 3.5e-10 39.9 0.0 4.7e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292655684|ref|YP_003535581.1| - 7.7e-09 35.2 0.0 1.1e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|292655684|ref|YP_003535581.1| - 5.9e-07 29.5 0.0 1.2e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292655684|ref|YP_003535581.1| - 6.2e-05 23.7 0.0 0.0001 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|292655684|ref|YP_003535581.1| - 0.00053 20.1 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_2 PF00891.18 gi|292655684|ref|YP_003535581.1| - 0.0014 17.9 0.0 0.0017 17.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|292655684|ref|YP_003535581.1| - 0.0024 17.8 0.0 0.0067 16.3 0.0 2.0 1 1 1 2 2 2 1 Hypothetical methyltransferase MTS PF05175.14 gi|292655684|ref|YP_003535581.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DREV PF05219.12 gi|292655684|ref|YP_003535581.1| - 0.021 13.9 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase HCV_NS4a PF01006.20 gi|292655684|ref|YP_003535581.1| - 0.042 13.6 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Methyltransf_24 PF13578.6 gi|292655684|ref|YP_003535581.1| - 0.048 14.7 0.3 0.069 14.2 0.3 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|292655684|ref|YP_003535581.1| - 0.049 12.2 0.0 0.067 11.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.20 gi|292655684|ref|YP_003535581.1| - 0.085 11.9 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF4350 PF14258.6 gi|292655684|ref|YP_003535581.1| - 0.12 12.8 0.7 1.5 9.3 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) Hydrolase_3 PF08282.12 gi|292655686|ref|YP_003535583.1| - 5.4e-27 95.1 0.0 1.8e-16 60.7 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292655686|ref|YP_003535583.1| - 5.5e-08 33.3 1.5 2.6e-06 27.9 1.5 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|292655686|ref|YP_003535583.1| - 3.9e-05 23.3 0.0 0.0012 18.5 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|292655686|ref|YP_003535583.1| - 0.001 18.3 0.6 0.0037 16.4 0.1 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase HAD PF12710.7 gi|292655686|ref|YP_003535583.1| - 0.054 13.9 8.6 2.9 8.3 0.1 3.4 3 1 1 4 4 4 0 haloacid dehalogenase-like hydrolase AAA_16 PF13191.6 gi|292655687|ref|YP_003535584.1| - 1.7e-12 48.0 5.3 3.2e-11 43.9 3.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292655687|ref|YP_003535584.1| - 0.00042 20.6 0.0 0.00076 19.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|292655687|ref|YP_003535584.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 NTPase Rrf2 PF02082.20 gi|292655687|ref|YP_003535584.1| - 0.033 14.6 0.0 0.073 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|292655687|ref|YP_003535584.1| - 0.041 13.7 0.1 0.13 12.1 0.1 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292655687|ref|YP_003535584.1| - 0.052 13.6 0.9 0.23 11.6 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|292655687|ref|YP_003535584.1| - 0.056 13.2 0.1 0.18 11.6 0.1 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain AAA PF00004.29 gi|292655687|ref|YP_003535584.1| - 0.092 13.2 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|292655687|ref|YP_003535584.1| - 0.11 12.9 0.5 0.53 10.7 0.3 2.3 1 1 1 2 2 2 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|292655687|ref|YP_003535584.1| - 0.14 12.6 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DAO PF01266.24 gi|292655688|ref|YP_003535585.1| - 9.1e-55 186.6 1.9 1.3e-54 186.2 1.9 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292655688|ref|YP_003535585.1| - 2.1e-09 37.0 0.4 2.2e-08 33.7 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292655688|ref|YP_003535585.1| - 5.4e-09 35.6 3.6 4.6e-08 32.6 3.6 2.0 1 1 0 1 1 1 1 FAD binding domain Fer2_BFD PF04324.15 gi|292655688|ref|YP_003535585.1| - 8.9e-09 35.6 5.7 9.7e-09 35.4 3.7 2.2 2 0 0 2 2 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.19 gi|292655688|ref|YP_003535585.1| - 3.4e-07 29.8 5.9 0.0023 17.2 1.3 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|292655688|ref|YP_003535585.1| - 0.0015 18.7 0.3 0.0097 16.1 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|292655688|ref|YP_003535585.1| - 0.0093 15.9 0.7 0.02 14.8 0.7 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|292655688|ref|YP_003535585.1| - 0.01 15.2 6.4 0.12 11.7 6.5 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase DAO_C PF16901.5 gi|292655688|ref|YP_003535585.1| - 0.036 14.0 0.0 0.08 12.8 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox PF00070.27 gi|292655688|ref|YP_003535585.1| - 0.042 14.4 0.4 0.042 14.4 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292655688|ref|YP_003535585.1| - 0.048 12.9 0.6 0.12 11.6 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|292655688|ref|YP_003535585.1| - 0.084 12.5 0.2 0.19 11.4 0.2 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|292655688|ref|YP_003535585.1| - 0.09 11.8 2.7 0.6 9.1 0.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.14 gi|292655688|ref|YP_003535585.1| - 0.12 11.1 1.3 0.19 10.4 0.1 1.9 3 0 0 3 3 3 0 HI0933-like protein GMC_oxred_N PF00732.19 gi|292655688|ref|YP_003535585.1| - 0.31 10.4 4.4 0.47 9.8 0.1 3.0 2 1 1 3 3 3 0 GMC oxidoreductase Thi4 PF01946.17 gi|292655688|ref|YP_003535585.1| - 0.38 9.9 2.3 0.95 8.7 0.1 2.3 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 gi|292655688|ref|YP_003535585.1| - 1.1 9.2 3.5 8 6.4 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|292655688|ref|YP_003535585.1| - 1.9 7.5 4.1 0.65 9.0 0.8 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|292655689|ref|YP_003535586.1| - 8.9e-29 100.8 4.6 2.3e-28 99.5 4.6 2.1 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|292655689|ref|YP_003535586.1| - 1.5e-10 41.2 1.5 2.4e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|292655689|ref|YP_003535586.1| - 2e-08 34.0 0.6 3.1e-05 23.5 1.4 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292655689|ref|YP_003535586.1| - 3.2e-08 33.2 0.2 0.00048 19.5 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292655689|ref|YP_003535586.1| - 4.8e-07 28.8 0.4 0.0033 16.2 0.4 2.4 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|292655689|ref|YP_003535586.1| - 9.8e-07 28.2 2.7 3.9e-06 26.2 1.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|292655689|ref|YP_003535586.1| - 0.0002 21.8 0.1 0.018 15.6 0.2 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|292655689|ref|YP_003535586.1| - 0.00047 19.5 0.6 0.00087 18.6 0.6 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|292655689|ref|YP_003535586.1| - 0.0015 17.8 0.2 0.01 15.1 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|292655689|ref|YP_003535586.1| - 0.021 14.1 0.4 1.3 8.2 0.4 2.2 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.6 gi|292655689|ref|YP_003535586.1| - 0.043 14.2 2.2 0.05 14.1 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|292655689|ref|YP_003535586.1| - 0.06 13.6 0.9 0.21 11.8 0.9 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain CCG PF02754.16 gi|292655690|ref|YP_003535587.1| - 5.9e-23 80.9 0.9 2.5e-11 43.6 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|292655690|ref|YP_003535587.1| - 1e-09 38.7 6.8 1e-09 38.7 6.8 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|292655690|ref|YP_003535587.1| - 1.7e-06 28.5 7.2 1.7e-06 28.5 7.2 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292655690|ref|YP_003535587.1| - 0.00013 22.0 9.7 0.00013 22.0 9.7 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|292655690|ref|YP_003535587.1| - 0.00014 22.4 11.0 0.00014 22.4 11.0 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292655690|ref|YP_003535587.1| - 0.0012 19.0 10.4 0.0012 19.0 10.4 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain DDE_Tnp_ISAZ013 PF07592.11 gi|292655690|ref|YP_003535587.1| - 0.012 14.6 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain zf-CSL PF05207.13 gi|292655690|ref|YP_003535587.1| - 0.02 14.6 7.3 0.29 10.9 0.0 4.1 5 0 0 5 5 5 0 CSL zinc finger DUF3390 PF11870.8 gi|292655690|ref|YP_003535587.1| - 0.022 15.1 0.0 0.041 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) ETF_QO PF05187.13 gi|292655690|ref|YP_003535587.1| - 0.16 12.1 1.2 0.42 10.8 0.1 2.2 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_16 PF13484.6 gi|292655690|ref|YP_003535587.1| - 0.56 11.2 17.9 0.18 12.8 12.0 3.0 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|292655690|ref|YP_003535587.1| - 2.6 8.3 13.6 0.48 10.6 0.8 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain FGGY_N PF00370.21 gi|292655691|ref|YP_003535588.1| - 5.9e-77 258.5 0.0 7.8e-77 258.1 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|292655691|ref|YP_003535588.1| - 9e-62 208.3 0.6 1.5e-61 207.6 0.3 1.5 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|292655691|ref|YP_003535588.1| - 2.2e-06 27.4 0.1 0.00056 19.5 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Gly-zipper_Omp PF13488.6 gi|292655692|ref|YP_003535589.1| - 0.0069 16.4 8.7 0.0069 16.4 8.7 4.7 5 1 0 5 5 5 2 Glycine zipper PTS-HPr PF00381.19 gi|292655693|ref|YP_003535590.1| - 7.3e-26 90.2 0.1 8e-26 90.1 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site EIIA-man PF03610.16 gi|292655694|ref|YP_003535591.1| - 3.2e-22 78.9 2.1 3.8e-22 78.7 2.1 1.0 1 0 0 1 1 1 1 PTS system fructose IIA component Dak2 PF02734.17 gi|292655695|ref|YP_003535592.1| - 2.4e-44 151.3 2.2 7.1e-44 149.8 0.6 1.9 1 1 1 2 2 2 1 DAK2 domain Dak1 PF02733.17 gi|292655696|ref|YP_003535593.1| - 2.2e-128 427.6 5.9 2.5e-128 427.4 5.9 1.0 1 0 0 1 1 1 1 Dak1 domain tRNA-synt_1 PF00133.22 gi|292655697|ref|YP_003535594.1| - 3.3e-181 603.6 1.8 4.5e-181 603.2 1.8 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|292655697|ref|YP_003535594.1| - 3.5e-27 95.2 0.6 2.9e-10 39.5 0.0 4.3 4 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|292655697|ref|YP_003535594.1| - 4.8e-26 91.5 0.2 1e-25 90.4 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|292655697|ref|YP_003535594.1| - 0.0002 21.0 0.0 0.00048 19.7 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|292655697|ref|YP_003535594.1| - 0.00084 18.4 0.0 0.028 13.3 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|292655697|ref|YP_003535594.1| - 0.0032 16.9 0.0 0.0071 15.7 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.14 gi|292655697|ref|YP_003535594.1| - 0.0052 16.6 0.3 0.013 15.3 0.3 1.7 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS 4HBT PF03061.22 gi|292655700|ref|YP_003535597.1| - 1.7e-16 60.3 0.2 2.8e-16 59.6 0.2 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|292655700|ref|YP_003535597.1| - 0.017 15.4 0.1 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|292655700|ref|YP_003535597.1| - 0.09 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 MaoC like domain DNase-RNase PF02577.14 gi|292655701|ref|YP_003535598.1| - 2.3e-37 127.5 0.0 2.6e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HTH_20 PF12840.7 gi|292655702|ref|YP_003535599.1| - 1.2e-15 57.3 1.2 2.9e-15 56.1 1.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292655702|ref|YP_003535599.1| - 1.8e-09 37.3 0.2 3.2e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292655702|ref|YP_003535599.1| - 2.4e-07 30.5 0.1 4.7e-07 29.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292655702|ref|YP_003535599.1| - 1.5e-06 27.6 0.0 3.2e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292655702|ref|YP_003535599.1| - 2.5e-05 24.0 0.2 7e-05 22.6 0.2 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|292655702|ref|YP_003535599.1| - 0.0008 19.7 0.0 0.0016 18.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator DprA_WH PF17782.1 gi|292655702|ref|YP_003535599.1| - 0.00089 19.3 2.9 0.00089 19.3 2.9 2.3 2 1 0 2 2 1 1 DprA winged helix domain HTH_27 PF13463.6 gi|292655702|ref|YP_003535599.1| - 0.0053 17.2 0.1 0.012 16.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|292655702|ref|YP_003535599.1| - 0.0055 16.6 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|292655702|ref|YP_003535599.1| - 0.007 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF2513 PF10711.9 gi|292655702|ref|YP_003535599.1| - 0.0073 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_11 PF08279.12 gi|292655702|ref|YP_003535599.1| - 0.0088 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|292655702|ref|YP_003535599.1| - 0.04 13.9 0.0 0.1 12.6 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain TraC_F_IV PF11130.8 gi|292655702|ref|YP_003535599.1| - 0.045 13.3 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 F pilus assembly Type-IV secretion system for plasmid transfer RP-C PF03428.13 gi|292655702|ref|YP_003535599.1| - 0.066 12.9 0.2 0.13 11.9 0.2 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain DUF2250 PF10007.9 gi|292655702|ref|YP_003535599.1| - 0.066 13.3 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.19 gi|292655702|ref|YP_003535599.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF1846 PF08903.11 gi|292655702|ref|YP_003535599.1| - 0.1 11.1 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) BLACT_WH PF17778.1 gi|292655702|ref|YP_003535599.1| - 0.13 12.3 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain ArsR PF09824.9 gi|292655702|ref|YP_003535599.1| - 0.21 11.2 0.0 0.29 10.7 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator ATP-synt_J PF04911.12 gi|292655702|ref|YP_003535599.1| - 1 9.0 3.9 0.34 10.5 1.0 1.7 2 0 0 2 2 2 0 ATP synthase j chain DUF4147 PF13660.6 gi|292655703|ref|YP_003535600.1| - 5.2e-77 258.5 0.2 1.1e-76 257.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|292655703|ref|YP_003535600.1| - 1.3e-27 96.2 4.1 2.3e-27 95.3 4.1 1.5 1 0 0 1 1 1 1 MOFRL family TraB PF01963.17 gi|292655704|ref|YP_003535601.1| - 2.2e-29 103.2 0.0 6e-18 65.7 0.0 2.2 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.22 gi|292655705|ref|YP_003535602.1| - 0.029 13.6 13.9 0.13 11.5 0.2 3.2 1 1 1 2 2 2 0 Peptidase family M50 DUF3021 PF11457.8 gi|292655705|ref|YP_003535602.1| - 7.3 6.9 11.9 1.8 8.9 6.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3021) AIRS_C PF02769.22 gi|292655707|ref|YP_003535604.1| - 1.2e-22 80.7 0.1 2e-22 80.0 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|292655707|ref|YP_003535604.1| - 1.7e-14 54.2 3.2 3.3e-14 53.3 3.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain p450 PF00067.22 gi|292655708|ref|YP_003535605.1| - 1.2e-73 248.5 0.0 1.5e-73 248.2 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 CBS PF00571.28 gi|292655709|ref|YP_003535606.1| - 3.9e-22 78.5 4.7 2.6e-11 43.8 0.1 2.5 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|292655709|ref|YP_003535606.1| - 7.4e-11 41.9 0.1 1.7e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|292655709|ref|YP_003535606.1| - 3.2e-10 40.2 0.7 6.4e-10 39.2 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|292655709|ref|YP_003535606.1| - 5.5e-06 26.3 0.0 2e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|292655709|ref|YP_003535606.1| - 0.00023 21.0 0.0 0.00041 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|292655709|ref|YP_003535606.1| - 0.0057 16.5 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|292655709|ref|YP_003535606.1| - 0.086 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_26 PF13443.6 gi|292655709|ref|YP_003535606.1| - 0.098 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF555 PF04475.12 gi|292655710|ref|YP_003535607.1| - 4.7e-45 152.0 0.1 5.4e-45 151.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.6 gi|292655710|ref|YP_003535607.1| - 0.05 13.3 0.2 0.079 12.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF2561 PF10812.8 gi|292655711|ref|YP_003535608.1| - 0.0046 17.0 0.2 0.0046 17.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2561) Proteasome PF00227.26 gi|292655712|ref|YP_003535609.1| - 2.8e-51 173.7 0.7 3.2e-51 173.5 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_ligase_A_M PF01068.21 gi|292655715|ref|YP_003535612.1| - 1.1e-46 159.1 0.0 1.5e-46 158.6 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|292655715|ref|YP_003535612.1| - 6.6e-33 114.5 0.0 1.1e-32 113.8 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|292655715|ref|YP_003535612.1| - 4.7e-17 62.4 0.0 1.7e-16 60.6 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|292655715|ref|YP_003535612.1| - 0.00098 19.5 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 RNA ligase Lactamase_B_3 PF13483.6 gi|292655717|ref|YP_003535614.1| - 1.9e-30 105.9 0.1 2.5e-30 105.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|292655717|ref|YP_003535614.1| - 0.026 14.0 1.4 0.045 13.3 1.4 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Abhydrolase_1 PF00561.20 gi|292655718|ref|YP_003535615.1| - 4.2e-07 29.9 0.1 0.00043 20.0 0.3 2.3 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|292655718|ref|YP_003535615.1| - 4.3e-07 29.4 0.0 8.6e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|292655718|ref|YP_003535615.1| - 0.00027 21.6 11.6 0.00046 20.9 11.4 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|292655718|ref|YP_003535615.1| - 0.0029 17.8 0.0 0.004 17.3 0.0 1.4 1 1 0 1 1 1 1 Thioesterase domain Esterase PF00756.20 gi|292655718|ref|YP_003535615.1| - 0.075 12.7 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Putative esterase UPF0227 PF05728.12 gi|292655718|ref|YP_003535615.1| - 0.22 11.4 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) TP6A_N PF04406.14 gi|292655720|ref|YP_003535617.1| - 2.1e-14 53.2 0.1 3.6e-14 52.5 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|292655720|ref|YP_003535617.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family Topo-VIb_trans PF09239.11 gi|292655721|ref|YP_003535618.1| - 1.9e-62 209.8 0.0 4.1e-62 208.7 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|292655721|ref|YP_003535618.1| - 4.9e-34 116.9 0.0 1.8e-33 115.1 0.0 2.0 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|292655721|ref|YP_003535618.1| - 8.2e-14 52.1 0.0 1.9e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|292655721|ref|YP_003535618.1| - 3.6e-12 46.3 0.0 9.9e-12 44.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF11 PF01345.18 gi|292655721|ref|YP_003535618.1| - 0.0017 18.6 0.4 0.0049 17.1 0.4 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF11 HATPase_c_2 PF13581.6 gi|292655721|ref|YP_003535618.1| - 0.002 18.1 1.4 0.02 14.8 0.0 3.1 3 1 0 3 3 3 1 Histidine kinase-like ATPase domain DNA_gyraseB PF00204.25 gi|292655722|ref|YP_003535619.1| - 1.5e-60 203.6 0.3 2.6e-60 202.9 0.3 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|292655722|ref|YP_003535619.1| - 1.1e-28 99.1 0.0 2.7e-28 97.9 0.0 1.7 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|292655722|ref|YP_003535619.1| - 3.6e-23 82.2 0.1 1.6e-22 80.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|292655722|ref|YP_003535619.1| - 7e-18 64.8 0.0 1.6e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|292655722|ref|YP_003535619.1| - 1.7e-05 24.7 0.0 4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|292655723|ref|YP_003535620.1| - 2.1e-154 514.5 0.0 2.7e-154 514.2 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|292655723|ref|YP_003535620.1| - 5.6e-78 256.3 12.7 1.5e-13 50.0 0.4 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.12 gi|292655723|ref|YP_003535620.1| - 0.053 11.5 0.1 0.31 9.0 0.0 1.9 2 0 0 2 2 2 0 IKI3 family DUF370 PF04025.12 gi|292655723|ref|YP_003535620.1| - 0.073 13.2 0.1 2.7 8.2 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF370) NUDIX PF00293.28 gi|292655724|ref|YP_003535621.1| - 4.7e-15 55.8 0.1 5.6e-15 55.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Arginase PF00491.21 gi|292655725|ref|YP_003535622.1| - 2.4e-76 256.9 3.7 2.8e-76 256.7 3.7 1.0 1 0 0 1 1 1 1 Arginase family IlvN PF07991.12 gi|292655725|ref|YP_003535622.1| - 0.043 13.4 0.0 0.099 12.2 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Epimerase PF01370.21 gi|292655726|ref|YP_003535623.1| - 5.4e-48 163.5 0.1 6.6e-48 163.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292655726|ref|YP_003535623.1| - 2.9e-47 161.7 0.4 1.7e-46 159.2 0.4 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|292655726|ref|YP_003535623.1| - 1.9e-16 60.1 0.1 2.3e-16 59.7 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|292655726|ref|YP_003535623.1| - 2.7e-12 46.3 0.0 3.8e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|292655726|ref|YP_003535623.1| - 1e-10 41.3 0.1 1.6e-07 30.8 0.1 2.4 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|292655726|ref|YP_003535623.1| - 6.3e-09 35.4 0.1 4.8e-06 25.9 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein KR PF08659.10 gi|292655726|ref|YP_003535623.1| - 0.0063 16.5 0.1 0.61 10.0 0.0 2.2 2 0 0 2 2 2 1 KR domain adh_short PF00106.25 gi|292655726|ref|YP_003535623.1| - 0.0071 15.8 0.5 0.49 9.8 0.0 2.7 1 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|292655726|ref|YP_003535623.1| - 0.071 13.0 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 NAD(P)H-binding HrcA_DNA-bdg PF03444.15 gi|292655727|ref|YP_003535624.1| - 8.6e-38 127.9 0.1 1.2e-37 127.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|292655727|ref|YP_003535624.1| - 8.8e-09 35.6 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|292655727|ref|YP_003535624.1| - 1.7e-06 27.8 0.0 2.6e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|292655727|ref|YP_003535624.1| - 0.038 13.9 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292655727|ref|YP_003535624.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Pyr_redox_2 PF07992.14 gi|292655728|ref|YP_003535625.1| - 9.2e-39 133.4 0.2 1.1e-38 133.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292655728|ref|YP_003535625.1| - 1.8e-07 31.6 0.5 9.6e-06 26.1 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|292655728|ref|YP_003535625.1| - 0.0076 16.3 0.2 2.2 8.2 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|292655728|ref|YP_003535625.1| - 0.059 12.5 0.0 2.6 7.1 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|292655728|ref|YP_003535625.1| - 0.07 12.4 0.3 7.8 5.7 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PNP_UDP_1 PF01048.20 gi|292655729|ref|YP_003535626.1| - 4.2e-47 160.4 2.2 5.1e-47 160.1 2.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Peptidase_M10 PF00413.24 gi|292655730|ref|YP_003535627.1| - 0.00024 21.0 0.0 0.00095 19.0 0.0 2.0 2 0 0 2 2 2 1 Matrixin Reprolysin_5 PF13688.6 gi|292655730|ref|YP_003535627.1| - 0.0016 18.6 0.0 0.0024 18.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|292655730|ref|YP_003535627.1| - 0.0066 16.1 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|292655730|ref|YP_003535627.1| - 0.054 14.0 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.13 gi|292655730|ref|YP_003535627.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M90 PF06167.12 gi|292655730|ref|YP_003535627.1| - 0.09 12.4 0.1 0.38 10.3 0.0 1.9 3 0 0 3 3 3 0 Glucose-regulated metallo-peptidase M90 Reprolysin_2 PF13574.6 gi|292655730|ref|YP_003535627.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like LPAM_1 PF08139.12 gi|292655730|ref|YP_003535627.1| - 4.1 8.1 5.3 8.4 7.1 5.3 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site dCMP_cyt_deam_1 PF00383.23 gi|292655731|ref|YP_003535628.1| - 3.6e-16 58.9 0.3 4.3e-16 58.6 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|292655731|ref|YP_003535628.1| - 1.5e-12 47.9 0.4 2.5e-12 47.2 0.4 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region FixS PF03597.15 gi|292655732|ref|YP_003535629.1| - 4.7 7.0 7.9 0.71 9.6 0.6 2.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Acetyltransf_1 PF00583.25 gi|292655734|ref|YP_003535631.1| - 6e-07 29.7 0.0 9.1e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292655734|ref|YP_003535631.1| - 0.00042 20.2 0.0 0.00069 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292655734|ref|YP_003535631.1| - 0.00061 20.2 0.0 0.00086 19.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292655734|ref|YP_003535631.1| - 0.00076 19.6 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|292655734|ref|YP_003535631.1| - 0.016 15.3 0.0 0.085 12.9 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.28 gi|292655735|ref|YP_003535632.1| - 4.1e-70 236.5 0.0 5.5e-70 236.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292655735|ref|YP_003535632.1| - 3.4e-24 85.6 0.1 7.5e-24 84.5 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|292655735|ref|YP_003535632.1| - 4e-10 39.5 0.1 4e-10 39.5 0.1 3.6 3 1 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus SDF PF00375.18 gi|292655736|ref|YP_003535633.1| - 2.2e-113 379.2 30.3 2.5e-113 379.1 30.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family AMP-binding PF00501.28 gi|292655737|ref|YP_003535634.1| - 2.3e-12 46.3 0.0 2.9e-08 32.8 0.0 2.4 2 1 0 2 2 2 2 AMP-binding enzyme Cupin_2 PF07883.11 gi|292655738|ref|YP_003535635.1| - 7.4e-10 38.4 0.2 9.4e-10 38.1 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|292655738|ref|YP_003535635.1| - 9e-05 22.1 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|292655738|ref|YP_003535635.1| - 0.00053 19.9 0.0 0.00063 19.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|292655738|ref|YP_003535635.1| - 0.001 18.8 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Pirin_C PF05726.13 gi|292655738|ref|YP_003535635.1| - 0.14 12.5 0.0 0.18 12.2 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DnaJ_C PF01556.18 gi|292655739|ref|YP_003535636.1| - 3.8e-42 143.9 0.0 5.4e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|292655739|ref|YP_003535636.1| - 4.3e-25 87.6 5.3 7.6e-25 86.8 5.3 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|292655739|ref|YP_003535636.1| - 1.8e-12 47.4 19.0 4.1e-12 46.3 19.0 1.7 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.6 gi|292655739|ref|YP_003535636.1| - 0.17 11.9 0.2 0.31 11.0 0.2 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein DZR PF12773.7 gi|292655739|ref|YP_003535636.1| - 0.63 10.1 9.8 1.4 9.0 9.8 1.6 1 0 0 1 1 1 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|292655739|ref|YP_003535636.1| - 0.93 9.5 18.7 4.4 7.4 5.0 3.2 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein HypA PF01155.19 gi|292655739|ref|YP_003535636.1| - 2.5 8.1 12.9 1.9 8.5 3.2 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HSP70 PF00012.20 gi|292655740|ref|YP_003535637.1| - 2.8e-241 801.9 14.3 9.1e-239 793.6 14.3 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|292655740|ref|YP_003535637.1| - 2.9e-21 75.6 0.2 2.9e-21 75.6 0.2 2.1 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|292655740|ref|YP_003535637.1| - 0.011 15.0 0.0 0.026 13.8 0.0 1.6 1 0 0 1 1 1 0 StbA protein FIVAR PF07554.13 gi|292655740|ref|YP_003535637.1| - 0.024 15.4 2.0 0.1 13.4 2.0 2.2 1 0 0 1 1 1 0 FIVAR domain DUF3982 PF13138.6 gi|292655740|ref|YP_003535637.1| - 0.042 13.6 1.2 5.5 6.9 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3982) PhyH PF05721.13 gi|292655740|ref|YP_003535637.1| - 0.057 13.7 1.7 0.11 12.7 0.8 1.9 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) FGGY_C PF02782.16 gi|292655740|ref|YP_003535637.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain DUF5352 PF17303.2 gi|292655740|ref|YP_003535637.1| - 0.25 11.2 1.1 0.72 9.7 1.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5352) BAF1_ABF1 PF04684.13 gi|292655740|ref|YP_003535637.1| - 1.2 8.1 6.2 1.7 7.6 6.2 1.2 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor Fib_alpha PF08702.10 gi|292655740|ref|YP_003535637.1| - 3.1 8.0 6.9 6.6 6.9 6.9 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Cwf_Cwc_15 PF04889.12 gi|292655740|ref|YP_003535637.1| - 6.8 6.3 20.6 1.7 8.3 16.9 1.9 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein Abhydrolase_6 PF12697.7 gi|292655741|ref|YP_003535638.1| - 2.2e-06 28.4 7.5 3.1e-06 28.0 7.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family GrpE PF01025.19 gi|292655742|ref|YP_003535639.1| - 2e-40 138.2 6.3 3.3e-40 137.5 6.3 1.3 1 0 0 1 1 1 1 GrpE Fib_alpha PF08702.10 gi|292655742|ref|YP_003535639.1| - 0.00044 20.5 0.8 0.00076 19.7 0.8 1.4 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family ATG16 PF08614.11 gi|292655742|ref|YP_003535639.1| - 0.017 15.3 11.5 0.027 14.7 11.5 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) ADIP PF11559.8 gi|292655742|ref|YP_003535639.1| - 0.022 14.9 4.7 0.043 13.9 4.7 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding PSI_PsaF PF02507.15 gi|292655742|ref|YP_003535639.1| - 0.037 13.9 0.4 0.061 13.2 0.4 1.3 1 0 0 1 1 1 0 Photosystem I reaction centre subunit III DUF812 PF05667.11 gi|292655742|ref|YP_003535639.1| - 0.043 12.7 6.3 0.056 12.3 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Tho2 PF11262.8 gi|292655742|ref|YP_003535639.1| - 0.047 12.9 0.1 0.06 12.5 0.1 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DUF4472 PF14739.6 gi|292655742|ref|YP_003535639.1| - 0.048 14.4 2.3 0.048 14.4 2.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) CLZ PF16526.5 gi|292655742|ref|YP_003535639.1| - 0.052 13.9 4.1 0.17 12.3 4.1 1.9 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spc7 PF08317.11 gi|292655742|ref|YP_003535639.1| - 0.055 12.4 4.2 0.067 12.1 4.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein CHASE6_C PF17150.4 gi|292655742|ref|YP_003535639.1| - 0.058 14.1 1.1 1.3 9.8 1.1 2.4 1 1 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain DUF787 PF05619.11 gi|292655742|ref|YP_003535639.1| - 0.073 12.2 0.6 0.094 11.8 0.6 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF787) Prefoldin_2 PF01920.20 gi|292655742|ref|YP_003535639.1| - 0.087 12.8 0.6 0.087 12.8 0.6 2.4 2 1 1 3 3 3 0 Prefoldin subunit DCB PF16213.5 gi|292655742|ref|YP_003535639.1| - 0.11 12.2 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Dimerisation and cyclophilin-binding domain of Mon2 Ax_dynein_light PF10211.9 gi|292655742|ref|YP_003535639.1| - 0.12 12.3 4.3 0.2 11.6 4.3 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain XhlA PF10779.9 gi|292655742|ref|YP_003535639.1| - 0.12 12.6 0.8 0.12 12.6 0.8 2.1 2 1 1 3 3 2 0 Haemolysin XhlA TMPIT PF07851.13 gi|292655742|ref|YP_003535639.1| - 0.18 11.0 1.0 0.24 10.6 1.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF1664 PF07889.12 gi|292655742|ref|YP_003535639.1| - 0.21 11.6 1.2 0.44 10.6 1.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) OmpH PF03938.14 gi|292655742|ref|YP_003535639.1| - 0.23 11.8 12.1 0.49 10.7 11.9 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIC PF04977.15 gi|292655742|ref|YP_003535639.1| - 0.31 10.8 9.9 0.28 11.0 2.4 2.5 1 1 1 2 2 2 0 Septum formation initiator UPF0242 PF06785.11 gi|292655742|ref|YP_003535639.1| - 0.41 10.7 6.7 0.5 10.4 6.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FemAB PF02388.16 gi|292655742|ref|YP_003535639.1| - 0.43 9.4 3.4 0.61 8.9 3.4 1.1 1 0 0 1 1 1 0 FemAB family TMF_DNA_bd PF12329.8 gi|292655742|ref|YP_003535639.1| - 0.55 10.3 6.1 0.82 9.7 4.7 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4407 PF14362.6 gi|292655742|ref|YP_003535639.1| - 0.6 9.4 17.8 0.96 8.7 17.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DHR10 PF18595.1 gi|292655742|ref|YP_003535639.1| - 0.8 9.8 15.1 0.036 14.1 9.6 1.6 2 0 0 2 2 1 0 Designed helical repeat protein 10 domain FUSC PF04632.12 gi|292655742|ref|YP_003535639.1| - 0.94 7.9 10.3 1.3 7.5 10.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF334 PF03904.13 gi|292655742|ref|YP_003535639.1| - 2.3 7.7 5.3 25 4.3 5.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF334) DASH_Spc19 PF08287.11 gi|292655742|ref|YP_003535639.1| - 7.4 6.5 10.9 0.74 9.7 6.0 1.8 1 1 1 2 2 2 0 Spc19 PAC2 PF09754.9 gi|292655743|ref|YP_003535640.1| - 7.6e-39 133.9 0.1 8.8e-39 133.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family kleA_kleC PF17383.2 gi|292655743|ref|YP_003535640.1| - 0.12 12.7 0.2 0.32 11.4 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A Methyltr_RsmB-F PF01189.17 gi|292655744|ref|YP_003535641.1| - 8e-54 182.3 0.0 1.2e-53 181.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|292655744|ref|YP_003535641.1| - 6e-06 26.7 0.0 1.4e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|292655744|ref|YP_003535641.1| - 5e-05 23.1 0.0 7.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|292655744|ref|YP_003535641.1| - 0.0013 18.8 0.0 0.002 18.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltranf_PUA PF13636.6 gi|292655745|ref|YP_003535642.1| - 2.4e-05 24.2 0.0 4.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF DUF790 PF05626.11 gi|292655746|ref|YP_003535643.1| - 5.4e-136 453.3 0.0 6.3e-136 453.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) fn3_5 PF06280.12 gi|292655747|ref|YP_003535644.1| - 0.18 12.5 0.0 0.24 12.1 0.0 1.2 1 0 0 1 1 1 0 Fn3-like domain ResIII PF04851.15 gi|292655748|ref|YP_003535645.1| - 2.1e-21 76.7 0.0 3.6e-20 72.7 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|292655748|ref|YP_003535645.1| - 1.5e-20 73.5 0.0 2e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|292655748|ref|YP_003535645.1| - 5e-19 67.9 2.6 1.8e-18 66.2 2.6 2.1 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|292655748|ref|YP_003535645.1| - 7.1e-17 61.7 0.0 4.2e-16 59.3 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|292655748|ref|YP_003535645.1| - 2.1e-07 30.9 0.0 2e-06 27.7 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|292655748|ref|YP_003535645.1| - 0.0091 16.2 0.0 0.93 9.6 0.0 2.4 2 0 0 2 2 2 1 Helicase C-terminal domain ABC_tran PF00005.27 gi|292655751|ref|YP_003535648.1| - 3.9e-32 111.6 0.0 5.6e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655751|ref|YP_003535648.1| - 3e-05 24.0 0.0 0.00071 19.5 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|292655751|ref|YP_003535648.1| - 0.00033 20.6 0.0 0.00073 19.5 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|292655751|ref|YP_003535648.1| - 0.00044 20.8 0.0 0.00056 20.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292655751|ref|YP_003535648.1| - 0.00083 19.6 0.0 0.0017 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|292655751|ref|YP_003535648.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|292655751|ref|YP_003535648.1| - 0.0011 19.4 0.0 0.0032 17.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|292655751|ref|YP_003535648.1| - 0.0042 17.5 0.0 0.0055 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|292655751|ref|YP_003535648.1| - 0.0048 16.4 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|292655751|ref|YP_003535648.1| - 0.0077 16.5 0.2 0.039 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|292655751|ref|YP_003535648.1| - 0.018 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|292655751|ref|YP_003535648.1| - 0.02 14.6 0.1 0.051 13.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|292655751|ref|YP_003535648.1| - 0.021 14.0 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|292655751|ref|YP_003535648.1| - 0.026 14.5 0.1 0.061 13.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|292655751|ref|YP_003535648.1| - 0.029 14.3 0.0 0.063 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|292655751|ref|YP_003535648.1| - 0.03 14.9 0.2 0.1 13.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|292655751|ref|YP_003535648.1| - 0.031 13.7 0.0 1.2 8.4 0.0 2.4 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.25 gi|292655751|ref|YP_003535648.1| - 0.035 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|292655751|ref|YP_003535648.1| - 0.036 13.8 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|292655751|ref|YP_003535648.1| - 0.04 13.8 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|292655751|ref|YP_003535648.1| - 0.065 12.8 0.5 0.63 9.6 0.0 2.6 3 1 1 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|292655751|ref|YP_003535648.1| - 0.074 13.2 0.1 0.13 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|292655751|ref|YP_003535648.1| - 0.088 12.9 0.2 0.29 11.2 0.0 1.9 2 1 1 3 3 3 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|292655751|ref|YP_003535648.1| - 0.12 11.1 0.0 1.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class TsaE PF02367.17 gi|292655751|ref|YP_003535648.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|292655751|ref|YP_003535648.1| - 0.17 12.3 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PduV-EutP PF10662.9 gi|292655751|ref|YP_003535648.1| - 0.19 11.5 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|292655751|ref|YP_003535648.1| - 0.42 10.3 1.7 0.73 9.5 0.1 2.1 3 0 0 3 3 2 0 AAA domain BPD_transp_1 PF00528.22 gi|292655752|ref|YP_003535649.1| - 1.6e-21 76.8 8.8 1.6e-21 76.8 8.8 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|292655753|ref|YP_003535650.1| - 1.3e-29 103.7 0.1 1.5e-29 103.4 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 gi|292655753|ref|YP_003535650.1| - 0.00051 19.8 3.8 0.00051 19.8 3.8 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Phosphonate-bd PF12974.7 gi|292655753|ref|YP_003535650.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|292655753|ref|YP_003535650.1| - 0.02 14.9 0.0 0.054 13.4 0.0 1.8 1 1 0 1 1 1 0 NMT1/THI5 like Phage_holin_5_1 PF06946.11 gi|292655753|ref|YP_003535650.1| - 0.13 12.6 0.3 0.32 11.4 0.3 1.6 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 Aminotran_1_2 PF00155.21 gi|292655754|ref|YP_003535651.1| - 8.5e-68 229.1 0.0 9.6e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|292655754|ref|YP_003535651.1| - 2.6e-14 53.3 0.2 4.2e-14 52.6 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|292655754|ref|YP_003535651.1| - 7.6e-08 31.3 0.0 1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|292655754|ref|YP_003535651.1| - 1.1e-07 31.2 0.0 1.5e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|292655754|ref|YP_003535651.1| - 2.9e-07 30.1 0.0 6.1e-07 29.0 0.0 1.4 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|292655754|ref|YP_003535651.1| - 0.069 11.8 0.0 0.14 10.8 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-III Na_H_antiporter PF03553.14 gi|292655755|ref|YP_003535652.1| - 1.4e-66 224.8 22.8 2.8e-65 220.5 5.5 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family CitMHS PF03600.16 gi|292655755|ref|YP_003535652.1| - 0.0072 15.6 41.9 1.5 8.0 21.6 2.4 1 1 1 2 2 2 2 Citrate transporter SseC PF04888.12 gi|292655755|ref|YP_003535652.1| - 0.1 12.2 0.1 0.1 12.2 0.1 1.8 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF5367 PF17329.2 gi|292655756|ref|YP_003535653.1| - 7.7e-24 83.7 0.9 1.3e-23 83.0 0.9 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5367) DUF3203 PF11462.8 gi|292655757|ref|YP_003535654.1| - 0.028 14.6 0.7 0.4 10.9 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3203) PRC PF05239.16 gi|292655757|ref|YP_003535654.1| - 0.1 12.7 0.7 0.91 9.7 0.7 1.9 1 1 0 1 1 1 0 PRC-barrel domain MMR_HSR1_C PF08438.10 gi|292655758|ref|YP_003535655.1| - 1.1e-29 103.3 0.0 1.7e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|292655758|ref|YP_003535655.1| - 4.2e-20 71.9 0.0 1.4e-18 67.0 0.0 2.7 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|292655758|ref|YP_003535655.1| - 4.1e-13 49.2 0.0 8.4e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|292655758|ref|YP_003535655.1| - 5e-08 32.6 0.0 1.5e-06 27.8 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|292655758|ref|YP_003535655.1| - 0.15 11.6 0.1 2 7.9 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DUF4349 PF14257.6 gi|292655759|ref|YP_003535656.1| - 5.6e-64 215.5 4.8 7.6e-64 215.1 4.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CENP-F_leu_zip PF10473.9 gi|292655759|ref|YP_003535656.1| - 0.0015 18.5 4.3 0.0025 17.8 4.3 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MAD PF05557.13 gi|292655759|ref|YP_003535656.1| - 0.0079 14.6 3.6 0.01 14.2 3.6 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein Dynactin_p22 PF07426.11 gi|292655759|ref|YP_003535656.1| - 0.0089 15.9 1.5 0.03 14.2 1.5 1.7 1 1 0 1 1 1 1 Dynactin subunit p22 AAA_23 PF13476.6 gi|292655759|ref|YP_003535656.1| - 0.009 16.5 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain FPP PF05911.11 gi|292655759|ref|YP_003535656.1| - 0.0098 14.1 0.5 0.011 13.9 0.5 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Osmo_CC PF08946.10 gi|292655759|ref|YP_003535656.1| - 0.021 15.1 7.0 0.087 13.1 1.8 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Prefoldin_2 PF01920.20 gi|292655759|ref|YP_003535656.1| - 0.022 14.7 4.4 0.92 9.5 1.5 2.3 1 1 1 2 2 2 0 Prefoldin subunit Lebercilin PF15619.6 gi|292655759|ref|YP_003535656.1| - 0.03 14.0 3.5 0.041 13.6 3.5 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease IFT20 PF14931.6 gi|292655759|ref|YP_003535656.1| - 0.033 14.4 6.1 0.42 10.8 0.3 2.4 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 PilJ PF13675.6 gi|292655759|ref|YP_003535656.1| - 0.053 13.5 1.9 0.13 12.3 0.8 2.0 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spc7 PF08317.11 gi|292655759|ref|YP_003535656.1| - 0.1 11.4 3.5 0.2 10.5 3.5 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein DivIC PF04977.15 gi|292655759|ref|YP_003535656.1| - 0.11 12.3 9.5 0.43 10.4 1.9 3.0 2 1 1 3 3 3 0 Septum formation initiator NPV_P10 PF05531.12 gi|292655759|ref|YP_003535656.1| - 0.16 12.5 4.6 1.8 9.1 1.0 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein ABC_tran_CTD PF16326.5 gi|292655759|ref|YP_003535656.1| - 0.18 12.1 4.1 0.53 10.6 0.8 2.3 1 1 1 2 2 2 0 ABC transporter C-terminal domain EMP24_GP25L PF01105.24 gi|292655759|ref|YP_003535656.1| - 0.19 11.7 7.4 0.1 12.5 0.4 2.7 2 1 1 3 3 3 0 emp24/gp25L/p24 family/GOLD Cauli_AT PF03233.13 gi|292655759|ref|YP_003535656.1| - 0.21 11.5 0.3 0.37 10.7 0.3 1.4 1 0 0 1 1 1 0 Aphid transmission protein APG6_N PF17675.1 gi|292655759|ref|YP_003535656.1| - 0.22 12.1 9.0 1.6 9.2 0.6 2.8 2 1 1 3 3 3 0 Apg6 coiled-coil region Spc24 PF08286.11 gi|292655759|ref|YP_003535656.1| - 0.22 11.8 4.6 3.4 8.0 0.7 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Snapin_Pallidin PF14712.6 gi|292655759|ref|YP_003535656.1| - 0.23 11.9 2.8 0.44 11.0 2.8 1.4 1 0 0 1 1 1 0 Snapin/Pallidin Laminin_II PF06009.12 gi|292655759|ref|YP_003535656.1| - 0.26 11.3 6.0 0.32 11.0 4.5 1.9 2 1 0 2 2 1 0 Laminin Domain II DUF1664 PF07889.12 gi|292655759|ref|YP_003535656.1| - 0.26 11.3 2.0 0.6 10.2 2.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Med9 PF07544.13 gi|292655759|ref|YP_003535656.1| - 0.36 10.9 2.4 1.7 8.8 2.4 2.0 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Tmemb_cc2 PF10267.9 gi|292655759|ref|YP_003535656.1| - 0.37 9.9 3.7 0.69 9.0 3.7 1.4 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Baculo_PEP_C PF04513.12 gi|292655759|ref|YP_003535656.1| - 0.42 10.6 2.5 1 9.4 2.4 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DASH_Spc19 PF08287.11 gi|292655759|ref|YP_003535656.1| - 0.42 10.5 6.1 0.55 10.1 1.0 2.2 1 1 2 3 3 3 0 Spc19 FlaC_arch PF05377.11 gi|292655759|ref|YP_003535656.1| - 0.52 10.7 3.2 8.2 6.9 0.3 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|292655759|ref|YP_003535656.1| - 1 9.9 12.6 1.2 9.6 1.1 2.7 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) COG2 PF06148.11 gi|292655759|ref|YP_003535656.1| - 1.4 9.1 4.7 1.2 9.2 3.4 1.6 2 0 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Cnn_1N PF07989.11 gi|292655759|ref|YP_003535656.1| - 1.5 9.0 5.8 6.8 6.9 0.4 2.4 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 SlyX PF04102.12 gi|292655759|ref|YP_003535656.1| - 1.8 9.2 6.2 3.4 8.3 1.1 2.4 1 1 1 2 2 2 0 SlyX DUF1192 PF06698.11 gi|292655759|ref|YP_003535656.1| - 1.9 8.6 6.0 0.92 9.6 1.0 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1192) DUF4407 PF14362.6 gi|292655759|ref|YP_003535656.1| - 2.2 7.6 5.6 1.8 7.8 3.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) MerR-DNA-bind PF09278.11 gi|292655759|ref|YP_003535656.1| - 2.5 8.7 9.2 3.8 8.1 1.6 2.5 1 1 1 2 2 2 0 MerR, DNA binding Bactofilin PF04519.13 gi|292655760|ref|YP_003535657.1| - 2.4e-15 56.6 7.5 3.2e-11 43.4 0.2 3.1 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|292655760|ref|YP_003535657.1| - 0.03 14.1 16.8 0.63 9.9 0.1 6.3 4 2 2 6 6 6 0 Bacterial transferase hexapeptide (six repeats) DUF3179 PF11376.8 gi|292655762|ref|YP_003535659.1| - 5.8e-08 32.4 0.8 5.5e-07 29.2 0.1 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF3179) Glycos_transf_2 PF00535.26 gi|292655763|ref|YP_003535660.1| - 2.6e-19 69.7 0.0 3.3e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292655763|ref|YP_003535660.1| - 3e-06 27.3 0.1 3.7e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RNase_H_2 PF13482.6 gi|292655765|ref|YP_003535662.1| - 9.1e-38 129.8 0.0 1.2e-37 129.5 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|292655765|ref|YP_003535662.1| - 0.00026 20.8 0.0 0.00039 20.2 0.0 1.3 1 1 0 1 1 1 1 3'-5' exonuclease SRAP PF02586.14 gi|292655766|ref|YP_003535663.1| - 6.8e-67 225.2 0.0 7.7e-67 225.0 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) YjbR PF04237.13 gi|292655766|ref|YP_003535663.1| - 0.0093 16.5 0.0 0.021 15.4 0.0 1.6 1 0 0 1 1 1 1 YjbR RHH_1 PF01402.21 gi|292655769|ref|YP_003535666.1| - 0.13 12.3 1.5 0.32 11.0 0.0 2.3 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.22 gi|292655770|ref|YP_003535667.1| - 1.4e-14 54.3 0.0 2.4e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|292655770|ref|YP_003535667.1| - 5.9e-08 33.1 0.0 1.2e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|292655770|ref|YP_003535667.1| - 1.5e-07 31.6 0.1 3.5e-07 30.4 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|292655770|ref|YP_003535667.1| - 0.028 14.8 0.0 0.054 13.8 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_integr_3 PF16795.5 gi|292655770|ref|YP_003535667.1| - 0.046 13.6 0.0 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 Archaeal phage integrase Ribonuc_L-PSP PF01042.21 gi|292655771|ref|YP_003535668.1| - 1.5e-17 63.8 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_20 PF12840.7 gi|292655772|ref|YP_003535669.1| - 2.8e-13 49.7 2.0 3.4e-13 49.4 1.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292655772|ref|YP_003535669.1| - 6.4e-08 32.4 0.2 1.2e-07 31.5 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|292655772|ref|YP_003535669.1| - 3.9e-05 23.1 0.0 9.5e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|292655772|ref|YP_003535669.1| - 0.0089 16.5 0.0 0.025 15.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|292655772|ref|YP_003535669.1| - 0.015 15.2 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|292655772|ref|YP_003535669.1| - 0.035 14.0 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Maff2 PF12750.7 gi|292655772|ref|YP_003535669.1| - 0.14 12.0 1.9 0.19 11.6 0.1 2.0 2 0 0 2 2 2 0 Maff2 family LapA_dom PF06305.11 gi|292655772|ref|YP_003535669.1| - 1.6 8.6 5.2 1 9.2 1.4 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain META PF03724.16 gi|292655773|ref|YP_003535670.1| - 0.067 13.2 0.0 0.86 9.6 0.0 2.4 2 1 0 2 2 2 0 META domain HisG PF01634.18 gi|292655774|ref|YP_003535671.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase U-box PF04564.15 gi|292655774|ref|YP_003535671.1| - 0.19 11.9 0.0 0.43 10.8 0.0 1.5 1 0 0 1 1 1 0 U-box domain Spc7 PF08317.11 gi|292655775|ref|YP_003535672.1| - 4.9e-07 28.9 14.3 0.00088 18.2 7.8 2.8 1 1 1 2 2 2 2 Spc7 kinetochore protein Laminin_I PF06008.14 gi|292655775|ref|YP_003535672.1| - 8.4e-07 28.9 9.5 0.023 14.4 0.7 3.3 1 1 2 3 3 3 3 Laminin Domain I XhlA PF10779.9 gi|292655775|ref|YP_003535672.1| - 1.2e-06 28.6 15.9 0.21 11.8 0.1 5.6 2 2 3 5 5 5 2 Haemolysin XhlA DUF16 PF01519.16 gi|292655775|ref|YP_003535672.1| - 1.4e-06 28.7 6.4 0.029 14.8 0.2 3.7 1 1 0 3 3 3 2 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|292655775|ref|YP_003535672.1| - 2.8e-06 27.4 3.7 0.058 13.4 0.2 4.0 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.12 gi|292655775|ref|YP_003535672.1| - 9.7e-06 25.7 12.2 0.029 14.4 0.7 4.6 1 1 3 4 4 4 2 TPR/MLP1/MLP2-like protein AAA_13 PF13166.6 gi|292655775|ref|YP_003535672.1| - 1.8e-05 23.6 6.6 0.0036 16.0 0.4 2.1 1 1 1 2 2 2 2 AAA domain DUF1664 PF07889.12 gi|292655775|ref|YP_003535672.1| - 3.4e-05 23.9 10.7 0.041 13.9 0.5 4.4 1 1 4 5 5 5 1 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|292655775|ref|YP_003535672.1| - 5.2e-05 21.6 8.7 0.0093 14.2 0.4 2.3 1 1 0 2 2 2 2 Septation ring formation regulator, EzrA Exonuc_VII_L PF02601.15 gi|292655775|ref|YP_003535672.1| - 7e-05 22.5 0.5 0.0047 16.5 0.5 2.2 1 1 0 1 1 1 1 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|292655775|ref|YP_003535672.1| - 7.6e-05 22.7 7.9 0.033 14.2 1.7 4.0 2 1 1 4 4 4 1 Laminin Domain II COG2 PF06148.11 gi|292655775|ref|YP_003535672.1| - 0.00012 22.2 10.4 0.044 13.9 0.4 4.1 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 MscS_porin PF12795.7 gi|292655775|ref|YP_003535672.1| - 0.00016 21.3 8.3 0.07 12.7 0.1 3.5 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain FliJ PF02050.16 gi|292655775|ref|YP_003535672.1| - 0.00022 21.4 0.5 3.2 8.0 0.4 3.8 1 1 3 4 4 4 0 Flagellar FliJ protein Tropomyosin PF00261.20 gi|292655775|ref|YP_003535672.1| - 0.00034 20.0 5.8 0.00034 20.0 5.8 2.8 1 1 1 2 2 2 1 Tropomyosin ATG16 PF08614.11 gi|292655775|ref|YP_003535672.1| - 0.00037 20.8 18.9 0.024 14.8 1.3 3.2 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) HMMR_N PF15905.5 gi|292655775|ref|YP_003535672.1| - 0.00049 19.7 4.7 0.053 13.0 1.1 2.8 1 1 2 3 3 3 2 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|292655775|ref|YP_003535672.1| - 0.00068 19.8 0.8 0.034 14.3 0.1 3.1 1 1 3 5 5 5 1 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|292655775|ref|YP_003535672.1| - 0.0007 19.9 9.2 0.94 9.8 0.5 4.3 2 1 4 6 6 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 RmuC PF02646.16 gi|292655775|ref|YP_003535672.1| - 0.00084 18.6 1.6 9.8 5.2 0.0 4.2 1 1 4 5 5 5 0 RmuC family NPV_P10 PF05531.12 gi|292655775|ref|YP_003535672.1| - 0.0011 19.4 16.2 1.5 9.4 1.8 5.9 1 1 4 6 6 6 1 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.6 gi|292655775|ref|YP_003535672.1| - 0.0014 19.0 6.3 0.19 12.2 2.2 4.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4200) MAD PF05557.13 gi|292655775|ref|YP_003535672.1| - 0.0015 17.0 4.1 0.0024 16.3 0.4 2.1 1 1 1 2 2 2 1 Mitotic checkpoint protein UPF0242 PF06785.11 gi|292655775|ref|YP_003535672.1| - 0.0039 17.3 5.7 0.94 9.6 6.1 3.0 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0242) N-terminus IFT57 PF10498.9 gi|292655775|ref|YP_003535672.1| - 0.0042 16.1 0.3 0.0042 16.1 0.3 2.8 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 FlaC_arch PF05377.11 gi|292655775|ref|YP_003535672.1| - 0.0052 17.2 9.3 6.1 7.3 0.1 5.7 4 2 3 7 7 4 0 Flagella accessory protein C (FlaC) HOOK PF05622.12 gi|292655775|ref|YP_003535672.1| - 0.006 14.8 1.2 0.006 14.8 1.2 2.9 1 1 2 3 3 3 1 HOOK protein DUF3584 PF12128.8 gi|292655775|ref|YP_003535672.1| - 0.0073 13.9 19.1 0.022 12.3 19.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) TSC22 PF01166.18 gi|292655775|ref|YP_003535672.1| - 0.012 15.9 2.3 0.12 12.7 0.6 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family DASH_Dam1 PF08653.10 gi|292655775|ref|YP_003535672.1| - 0.014 15.2 2.6 3.2 7.6 0.0 5.1 6 1 1 7 7 5 0 DASH complex subunit Dam1 APG6_N PF17675.1 gi|292655775|ref|YP_003535672.1| - 0.014 16.0 19.2 13 6.4 0.1 4.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Seryl_tRNA_N PF02403.22 gi|292655775|ref|YP_003535672.1| - 0.014 15.6 8.1 7.3 6.9 1.3 4.7 2 2 3 5 5 4 0 Seryl-tRNA synthetase N-terminal domain Sec34 PF04136.15 gi|292655775|ref|YP_003535672.1| - 0.02 14.7 0.5 1.6 8.6 0.0 3.2 1 1 2 3 3 3 0 Sec34-like family Phage_GP20 PF06810.11 gi|292655775|ref|YP_003535672.1| - 0.021 14.6 9.1 1.8 8.4 3.2 3.4 1 1 1 2 2 2 0 Phage minor structural protein GP20 APG17 PF04108.12 gi|292655775|ref|YP_003535672.1| - 0.026 13.6 11.4 0.18 10.8 5.9 2.9 1 1 2 3 3 3 0 Autophagy protein Apg17 Fez1 PF06818.15 gi|292655775|ref|YP_003535672.1| - 0.032 14.7 10.2 0.3 11.5 4.0 3.2 1 1 2 3 3 3 0 Fez1 DUF1515 PF07439.11 gi|292655775|ref|YP_003535672.1| - 0.042 13.9 0.7 0.042 13.9 0.7 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1515) DUF4201 PF13870.6 gi|292655775|ref|YP_003535672.1| - 0.046 13.4 0.8 0.49 10.1 0.2 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) Prefoldin PF02996.17 gi|292655775|ref|YP_003535672.1| - 0.056 13.4 10.2 9.1 6.2 0.9 5.3 2 2 3 6 6 5 0 Prefoldin subunit CCDC144C PF14915.6 gi|292655775|ref|YP_003535672.1| - 0.067 12.3 2.5 0.29 10.2 0.3 2.2 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region Bacillus_HBL PF05791.11 gi|292655775|ref|YP_003535672.1| - 0.08 12.8 1.5 7.2 6.4 0.0 3.1 3 1 1 4 4 3 0 Bacillus haemolytic enterotoxin (HBL) Atg14 PF10186.9 gi|292655775|ref|YP_003535672.1| - 0.085 11.9 1.6 1.1 8.3 0.7 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF5082 PF16888.5 gi|292655775|ref|YP_003535672.1| - 0.092 13.0 7.8 46 4.3 0.1 5.0 2 1 2 4 4 3 0 Domain of unknown function (DUF5082) Nup54 PF13874.6 gi|292655775|ref|YP_003535672.1| - 0.1 12.7 3.9 2.9 8.0 1.2 3.2 2 1 1 3 3 2 0 Nucleoporin complex subunit 54 CREPT PF16566.5 gi|292655775|ref|YP_003535672.1| - 0.12 12.5 2.0 2.3 8.4 0.0 3.4 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour THOC7 PF05615.13 gi|292655775|ref|YP_003535672.1| - 0.13 12.5 11.8 1.9 8.8 1.7 4.0 1 1 1 2 2 2 0 Tho complex subunit 7 CENP-F_leu_zip PF10473.9 gi|292655775|ref|YP_003535672.1| - 0.16 12.0 11.0 2.3 8.3 6.7 3.6 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RPW8 PF05659.11 gi|292655775|ref|YP_003535672.1| - 0.18 11.5 0.9 5 6.8 0.0 3.3 3 1 1 4 4 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CorA PF01544.18 gi|292655775|ref|YP_003535672.1| - 0.2 10.9 20.3 0.22 10.8 2.6 2.9 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DHR10 PF18595.1 gi|292655775|ref|YP_003535672.1| - 0.23 11.5 17.0 0.72 9.9 3.7 4.9 2 1 3 5 5 5 0 Designed helical repeat protein 10 domain Leu_zip PF15294.6 gi|292655775|ref|YP_003535672.1| - 0.23 10.9 3.4 0.63 9.5 0.2 2.4 1 1 1 2 2 2 0 Leucine zipper MtrG PF04210.13 gi|292655775|ref|YP_003535672.1| - 0.24 11.3 6.4 8.5 6.3 0.1 4.6 3 2 0 5 5 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Prominin PF05478.11 gi|292655775|ref|YP_003535672.1| - 0.24 9.3 0.2 0.54 8.1 0.2 1.5 1 1 0 1 1 1 0 Prominin Flagellin_C PF00700.21 gi|292655775|ref|YP_003535672.1| - 0.54 10.6 3.3 36 4.8 0.5 4.0 2 1 3 5 5 4 0 Bacterial flagellin C-terminal helical region DUF2730 PF10805.8 gi|292655775|ref|YP_003535672.1| - 0.56 10.3 6.5 7.1 6.8 0.4 4.4 1 1 4 6 6 6 0 Protein of unknown function (DUF2730) DUF812 PF05667.11 gi|292655775|ref|YP_003535672.1| - 0.59 9.0 13.0 43 2.8 13.1 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Fzo_mitofusin PF04799.13 gi|292655775|ref|YP_003535672.1| - 0.69 9.4 4.2 18 4.8 0.1 3.3 2 1 1 4 4 4 0 fzo-like conserved region ABC_tran_CTD PF16326.5 gi|292655775|ref|YP_003535672.1| - 0.7 10.2 27.3 2.2 8.6 0.0 5.7 3 2 2 6 6 4 0 ABC transporter C-terminal domain YkyA PF10368.9 gi|292655775|ref|YP_003535672.1| - 0.72 9.5 9.4 6.2 6.4 0.2 3.2 1 1 3 4 4 4 0 Putative cell-wall binding lipoprotein Flagellin_N PF00669.20 gi|292655775|ref|YP_003535672.1| - 0.94 9.6 8.1 2.4 8.3 0.9 3.6 2 2 1 3 3 3 0 Bacterial flagellin N-terminal helical region TolA_bind_tri PF16331.5 gi|292655775|ref|YP_003535672.1| - 1 9.5 10.0 3.9 7.6 0.0 4.3 3 1 2 5 5 4 0 TolA binding protein trimerisation TBCC_N PF16752.5 gi|292655775|ref|YP_003535672.1| - 1.2 9.6 9.2 11 6.4 1.9 3.7 1 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain DLP_helical PF18709.1 gi|292655775|ref|YP_003535672.1| - 1.3 8.2 5.8 2 7.5 1.4 2.9 1 1 3 4 4 4 0 Dynamin-like helical domain Tropomyosin_1 PF12718.7 gi|292655775|ref|YP_003535672.1| - 1.3 9.2 22.8 1.4 9.0 7.8 3.6 1 1 3 4 4 4 0 Tropomyosin like PEARLI-4 PF05278.12 gi|292655775|ref|YP_003535672.1| - 1.3 8.5 4.3 1.8 8.1 0.5 2.5 1 1 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF724 PF05266.14 gi|292655775|ref|YP_003535672.1| - 1.5 8.6 4.0 6.7 6.5 1.7 2.7 1 1 3 4 4 4 0 Protein of unknown function (DUF724) Csm1_N PF18504.1 gi|292655775|ref|YP_003535672.1| - 1.6 9.1 10.9 14 6.1 0.1 5.4 2 1 1 5 5 4 0 Csm1 N-terminal domain DegS PF05384.11 gi|292655775|ref|YP_003535672.1| - 1.7 8.1 7.2 3.6 7.0 0.4 3.3 2 1 0 3 3 3 0 Sensor protein DegS SNARE PF05739.19 gi|292655775|ref|YP_003535672.1| - 2.2 8.4 11.1 2.3 8.3 0.4 4.2 3 1 1 4 4 4 0 SNARE domain FlgN PF05130.12 gi|292655775|ref|YP_003535672.1| - 2.2 8.8 9.0 13 6.3 5.6 3.0 2 1 1 3 3 3 0 FlgN protein DASH_Spc19 PF08287.11 gi|292655775|ref|YP_003535672.1| - 2.7 7.9 5.6 7.8 6.4 2.0 2.9 1 1 0 2 2 2 0 Spc19 DUF948 PF06103.11 gi|292655775|ref|YP_003535672.1| - 3.2 8.1 9.2 17 5.8 0.8 4.0 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) Golgin_A5 PF09787.9 gi|292655775|ref|YP_003535672.1| - 4.9 6.5 13.7 3.6 6.9 7.1 2.7 1 1 2 3 3 3 0 Golgin subfamily A member 5 DUF2408 PF10303.9 gi|292655775|ref|YP_003535672.1| - 5.8 7.5 6.3 2.5e+02 2.2 6.4 3.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF3552 PF12072.8 gi|292655775|ref|YP_003535672.1| - 8.1 5.8 20.3 0.76 9.2 2.6 3.6 2 1 4 6 6 5 0 Domain of unknown function (DUF3552) Fmp27_WPPW PF10359.9 gi|292655775|ref|YP_003535672.1| - 9.8 4.9 6.3 4.1e+02 -0.5 6.6 2.7 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Lactamase_B_2 PF12706.7 gi|292655776|ref|YP_003535673.1| - 1.1e-17 64.2 0.8 1.4e-17 63.8 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292655776|ref|YP_003535673.1| - 5.9e-11 42.5 0.1 9.2e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292655776|ref|YP_003535673.1| - 0.18 11.8 12.6 1.2 9.1 12.7 2.3 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily LDcluster4 PF18306.1 gi|292655778|ref|YP_003535675.1| - 1.1e-36 125.7 1.7 1.2e-36 125.7 1.7 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|292655778|ref|YP_003535675.1| - 6e-07 29.6 0.1 1e-06 28.9 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|292655778|ref|YP_003535675.1| - 9.2e-07 28.3 1.7 5.1e-06 25.9 0.5 1.9 2 0 0 2 2 2 1 DNA recombination-mediator protein A Diphthamide_syn PF01866.17 gi|292655781|ref|YP_003535678.1| - 6.7e-77 258.9 0.0 8.4e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Peptidase_S66 PF02016.15 gi|292655781|ref|YP_003535678.1| - 0.0078 16.3 0.0 1 9.5 0.0 2.6 3 0 0 3 3 3 1 LD-carboxypeptidase N-terminal domain GTP-bdg_N PF13167.6 gi|292655781|ref|YP_003535678.1| - 0.018 15.7 0.0 0.54 11.0 0.0 2.3 1 1 0 2 2 2 0 GTP-binding GTPase N-terminal CCB1 PF12046.8 gi|292655781|ref|YP_003535678.1| - 0.24 10.7 0.0 0.47 9.8 0.0 1.4 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Abhydrolase_2 PF02230.16 gi|292655782|ref|YP_003535679.1| - 1.3e-21 77.4 0.0 1.6e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|292655782|ref|YP_003535679.1| - 3.2e-07 30.1 0.0 4.9e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|292655782|ref|YP_003535679.1| - 1.3e-05 24.8 0.0 0.0039 16.7 0.0 2.5 2 1 1 3 3 3 2 Prolyl oligopeptidase family Esterase PF00756.20 gi|292655782|ref|YP_003535679.1| - 6.5e-05 22.7 0.0 8.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|292655782|ref|YP_003535679.1| - 0.00012 21.4 0.1 0.032 13.5 0.1 2.8 1 1 1 2 2 2 1 Serine aminopeptidase, S33 LIP PF03583.14 gi|292655782|ref|YP_003535679.1| - 0.0099 15.2 0.0 0.72 9.1 0.0 2.1 1 1 1 2 2 2 1 Secretory lipase FSH1 PF03959.13 gi|292655782|ref|YP_003535679.1| - 0.016 14.8 0.0 0.043 13.5 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) PGAP1 PF07819.13 gi|292655782|ref|YP_003535679.1| - 0.04 13.6 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Peptidase_S15 PF02129.18 gi|292655782|ref|YP_003535679.1| - 0.061 12.9 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Esterase_phd PF10503.9 gi|292655782|ref|YP_003535679.1| - 0.075 12.5 0.2 0.31 10.5 0.2 2.0 1 1 0 1 1 1 0 Esterase PHB depolymerase DUF676 PF05057.14 gi|292655782|ref|YP_003535679.1| - 0.24 10.9 0.0 4.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Putative serine esterase (DUF676) Com_YlbF PF06133.11 gi|292655783|ref|YP_003535680.1| - 1.3e-22 80.3 5.5 1.5e-22 80.2 5.5 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA SH3BP5 PF05276.14 gi|292655783|ref|YP_003535680.1| - 0.002 17.9 1.9 0.0028 17.5 1.9 1.2 1 0 0 1 1 1 1 SH3 domain-binding protein 5 (SH3BP5) Seryl_tRNA_N PF02403.22 gi|292655783|ref|YP_003535680.1| - 0.0045 17.2 2.6 0.0069 16.6 2.6 1.4 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain OmpH PF03938.14 gi|292655783|ref|YP_003535680.1| - 0.0057 17.0 4.8 0.0074 16.6 4.8 1.1 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) BMFP PF04380.13 gi|292655783|ref|YP_003535680.1| - 0.023 15.1 3.4 0.054 14.0 3.4 1.6 1 1 0 1 1 1 0 Membrane fusogenic activity DUF3080 PF11279.8 gi|292655783|ref|YP_003535680.1| - 0.04 13.1 0.3 0.046 12.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) APG6_N PF17675.1 gi|292655783|ref|YP_003535680.1| - 1.7 9.1 8.4 2.9 8.4 8.4 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region Styelin PF17562.2 gi|292655783|ref|YP_003535680.1| - 2.8 8.4 5.1 1.8 9.0 1.0 2.2 2 0 0 2 2 2 0 Styelin CbiA PF01656.23 gi|292655784|ref|YP_003535681.1| - 4.2e-14 52.7 0.0 5.6e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|292655784|ref|YP_003535681.1| - 2.7e-07 30.3 4.0 5.7e-06 26.0 4.0 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|292655784|ref|YP_003535681.1| - 3.6e-06 26.9 1.6 0.013 15.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|292655784|ref|YP_003535681.1| - 0.00056 19.9 0.9 0.00064 19.7 0.1 1.5 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|292655784|ref|YP_003535681.1| - 0.002 17.4 0.0 0.0027 17.0 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ Zeta_toxin PF06414.12 gi|292655784|ref|YP_003535681.1| - 0.093 12.0 0.2 0.13 11.5 0.2 1.2 1 0 0 1 1 1 0 Zeta toxin CBP_BcsQ PF06564.12 gi|292655784|ref|YP_003535681.1| - 0.19 11.2 0.1 0.86 9.0 0.3 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ATPase PF06745.13 gi|292655785|ref|YP_003535682.1| - 5.5e-07 29.2 0.0 0.0037 16.6 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.11 gi|292655785|ref|YP_003535682.1| - 0.057 12.6 0.1 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 PAXNEB protein Rad51 PF08423.11 gi|292655785|ref|YP_003535682.1| - 0.13 11.5 0.1 0.25 10.6 0.0 1.5 2 0 0 2 2 2 0 Rad51 FKBP_C PF00254.28 gi|292655787|ref|YP_003535684.1| - 7.4e-08 32.6 0.1 1.9e-07 31.3 0.1 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF1967 PF09269.11 gi|292655787|ref|YP_003535684.1| - 1.5 8.8 4.6 26 4.8 0.1 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF1967) CoA_binding_3 PF13727.6 gi|292655788|ref|YP_003535685.1| - 0.15 12.0 1.2 0.41 10.6 0.4 1.9 2 0 0 2 2 2 0 CoA-binding domain LtrA PF06772.11 gi|292655791|ref|YP_003535688.1| - 0.00013 21.3 3.0 0.00015 21.1 3.0 1.1 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) ICE2 PF08426.10 gi|292655791|ref|YP_003535688.1| - 0.17 11.0 1.2 0.19 10.8 1.2 1.0 1 0 0 1 1 1 0 ICE2 DUF2207 PF09972.9 gi|292655791|ref|YP_003535688.1| - 0.51 9.0 1.7 0.58 8.9 1.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Gram_pos_anchor PF00746.21 gi|292655791|ref|YP_003535688.1| - 6 6.9 5.5 7.2 6.6 0.9 2.7 2 0 0 2 2 2 0 LPXTG cell wall anchor motif COX4_pro PF03626.14 gi|292655793|ref|YP_003535690.1| - 6.9e-11 42.4 9.9 9e-11 42.0 9.9 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF4793 PF16041.5 gi|292655793|ref|YP_003535690.1| - 0.081 13.1 0.2 0.081 13.1 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4793) DUF4131 PF13567.6 gi|292655793|ref|YP_003535690.1| - 1.7 8.2 6.2 2.8 7.6 6.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF983 PF06170.12 gi|292655793|ref|YP_003535690.1| - 6.8 7.2 9.2 17 5.9 5.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) COX1 PF00115.20 gi|292655794|ref|YP_003535691.1| - 2.2e-129 432.1 69.9 2.2e-129 432.1 69.9 2.9 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|292655794|ref|YP_003535691.1| - 3e-18 66.6 10.9 3e-18 66.6 10.9 3.0 2 1 1 3 3 3 1 Cytochrome c oxidase subunit III COX2 PF00116.20 gi|292655795|ref|YP_003535692.1| - 3.6e-18 65.6 0.1 2.3e-17 63.0 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|292655795|ref|YP_003535692.1| - 9.9e-05 22.4 0.0 0.00016 21.7 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain CYTH PF01928.21 gi|292655797|ref|YP_003535694.1| - 5.4e-40 137.2 2.2 6.1e-40 137.0 2.2 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.19 gi|292655798|ref|YP_003535695.1| - 9.2e-175 581.2 4.3 1e-174 581.0 4.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) PP_kinase_C_1 PF17941.1 gi|292655799|ref|YP_003535696.1| - 2.4e-70 235.4 0.0 3.8e-70 234.8 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|292655799|ref|YP_003535696.1| - 7.5e-69 230.6 0.0 2.1e-67 225.9 0.0 2.2 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|292655799|ref|YP_003535696.1| - 2.2e-65 220.0 2.8 3.6e-65 219.4 2.8 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|292655799|ref|YP_003535696.1| - 3.2e-36 123.9 0.0 8.7e-36 122.5 0.0 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|292655799|ref|YP_003535696.1| - 2.7e-11 43.5 0.0 7.4e-05 22.7 0.1 2.5 2 0 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|292655799|ref|YP_003535696.1| - 0.075 12.6 0.4 0.18 11.3 0.4 1.6 1 0 0 1 1 1 0 Enolase C-terminal domain-like ThiI PF02568.14 gi|292655800|ref|YP_003535697.1| - 7.1e-47 159.5 0.0 9.4e-47 159.2 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|292655800|ref|YP_003535697.1| - 1e-16 61.3 0.0 2.3e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|292655800|ref|YP_003535697.1| - 5.5e-05 22.8 0.0 0.012 15.1 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Metal_resist PF13801.6 gi|292655800|ref|YP_003535697.1| - 0.027 14.7 3.4 0.22 11.7 1.0 2.7 2 0 0 2 2 2 0 Heavy-metal resistance tRNA_Me_trans PF03054.16 gi|292655800|ref|YP_003535697.1| - 0.066 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Ldl_recept_b PF00058.17 gi|292655801|ref|YP_003535698.1| - 0.03 14.8 0.0 0.042 14.3 0.0 1.2 1 0 0 1 1 1 0 Low-density lipoprotein receptor repeat class B DUF3263 PF11662.8 gi|292655801|ref|YP_003535698.1| - 0.036 13.9 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) PALP PF00291.25 gi|292655803|ref|YP_003535700.1| - 2.3e-63 214.4 0.9 2.9e-63 214.0 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|292655803|ref|YP_003535700.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.7 gi|292655803|ref|YP_003535700.1| - 0.039 14.6 0.9 0.074 13.6 0.1 1.8 2 1 0 2 2 2 0 Alpha/beta hydrolase family Thioredoxin PF00085.20 gi|292655804|ref|YP_003535701.1| - 0.00015 21.7 0.0 0.00032 20.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|292655804|ref|YP_003535701.1| - 0.048 13.4 0.1 0.12 12.1 0.1 1.8 1 1 0 1 1 1 0 Thioredoxin AhpC-TSA PF00578.21 gi|292655804|ref|YP_003535701.1| - 0.16 11.9 0.0 0.44 10.5 0.0 1.6 2 0 0 2 2 2 0 AhpC/TSA family Thioredox_DsbH PF03190.15 gi|292655805|ref|YP_003535702.1| - 5.8e-75 250.7 0.0 8.7e-75 250.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|292655805|ref|YP_003535702.1| - 1.4e-10 41.2 0.0 3.1e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|292655805|ref|YP_003535702.1| - 0.0032 16.8 0.6 0.019 14.2 0.2 2.2 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|292655805|ref|YP_003535702.1| - 0.1 12.1 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 PqqD PF05402.12 gi|292655805|ref|YP_003535702.1| - 0.16 12.3 0.4 25 5.3 0.3 2.9 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) GARS_A PF01071.19 gi|292655806|ref|YP_003535703.1| - 6.4e-51 172.9 0.2 1.3e-50 171.9 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|292655806|ref|YP_003535703.1| - 1.8e-20 73.5 0.2 3.6e-20 72.5 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|292655806|ref|YP_003535703.1| - 2.9e-15 56.3 0.3 1.8e-14 53.8 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|292655806|ref|YP_003535703.1| - 0.00024 21.2 0.0 0.00069 19.7 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|292655806|ref|YP_003535703.1| - 0.036 13.3 0.0 0.43 9.8 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp TPR_19 PF14559.6 gi|292655806|ref|YP_003535703.1| - 0.096 13.2 0.0 0.71 10.4 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Hexapep_2 PF14602.6 gi|292655807|ref|YP_003535704.1| - 3.7e-10 39.4 3.2 9.4e-08 31.7 0.1 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|292655807|ref|YP_003535704.1| - 4.2e-09 35.8 4.3 2.4e-07 30.2 0.1 2.7 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) MS_channel PF00924.18 gi|292655808|ref|YP_003535705.1| - 2.2e-14 53.5 1.2 2.2e-14 53.5 1.2 2.4 3 0 0 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|292655808|ref|YP_003535705.1| - 1.4e-07 31.4 20.8 1.1e-06 28.4 2.3 3.5 3 0 0 3 3 3 2 Conserved TM helix DisA_N PF02457.16 gi|292655809|ref|YP_003535706.1| - 4.4e-20 71.4 0.0 7.1e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Bac_globin PF01152.21 gi|292655810|ref|YP_003535707.1| - 3.6e-21 75.5 0.0 4.1e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|292655810|ref|YP_003535707.1| - 0.001 19.0 0.1 0.0098 15.8 0.0 2.0 2 0 0 2 2 2 1 Protoglobin TFIIB PF00382.19 gi|292655812|ref|YP_003535709.1| - 3.8e-05 23.6 0.3 5.3e-05 23.2 0.3 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|292655812|ref|YP_003535709.1| - 0.012 15.1 0.3 0.034 13.7 0.3 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|292655812|ref|YP_003535709.1| - 0.02 15.0 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2070 PF09843.9 gi|292655813|ref|YP_003535710.1| - 0.11 10.7 2.7 0.11 10.8 2.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2892 PF11127.8 gi|292655813|ref|YP_003535710.1| - 7.6 6.6 10.4 13 5.9 10.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) CTP_transf_like PF01467.26 gi|292655814|ref|YP_003535711.1| - 5.7e-13 49.3 0.0 7e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|292655814|ref|YP_003535711.1| - 0.0028 17.6 0.7 0.051 13.5 0.3 2.2 2 1 0 2 2 2 1 FAD synthetase TrmB PF01978.19 gi|292655815|ref|YP_003535712.1| - 2.6e-07 30.4 0.1 3.8e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|292655815|ref|YP_003535712.1| - 3.6e-06 26.4 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|292655815|ref|YP_003535712.1| - 0.00015 21.4 0.1 0.00035 20.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|292655815|ref|YP_003535712.1| - 0.00046 20.2 0.4 0.00086 19.3 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|292655815|ref|YP_003535712.1| - 0.0018 18.1 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|292655815|ref|YP_003535712.1| - 0.0083 16.0 0.2 0.023 14.6 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|292655815|ref|YP_003535712.1| - 0.0098 15.7 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292655815|ref|YP_003535712.1| - 0.019 14.9 0.1 0.032 14.2 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.6 gi|292655815|ref|YP_003535712.1| - 0.02 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Rrf2 PF02082.20 gi|292655815|ref|YP_003535712.1| - 0.039 14.3 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|292655815|ref|YP_003535712.1| - 0.065 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|292655815|ref|YP_003535712.1| - 0.084 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3369 PF11849.8 gi|292655815|ref|YP_003535712.1| - 0.13 12.5 0.0 0.2 11.8 0.0 1.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3369) GCS2 PF04107.13 gi|292655816|ref|YP_003535713.1| - 1.4e-74 251.1 0.2 1.6e-74 250.9 0.2 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|292655816|ref|YP_003535713.1| - 0.01 15.5 0.1 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Putative amidoligase enzyme Fibrillarin PF01269.17 gi|292655817|ref|YP_003535714.1| - 1e-53 181.8 0.0 1.2e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|292655818|ref|YP_003535715.1| - 2.3e-38 132.0 0.0 3.3e-38 131.5 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin CorA PF01544.18 gi|292655823|ref|YP_003535720.1| - 2.6e-63 214.1 0.0 2.9e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TFIIB PF00382.19 gi|292655824|ref|YP_003535721.1| - 1.8e-37 127.2 0.1 5.1e-18 64.9 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|292655824|ref|YP_003535721.1| - 2.1e-16 59.2 3.4 3.6e-16 58.4 3.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|292655824|ref|YP_003535721.1| - 0.0014 18.7 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|292655824|ref|YP_003535721.1| - 0.011 15.3 3.1 0.08 12.5 0.0 3.4 4 0 0 4 4 4 0 Sigma-70, region 4 zf-RRN7 PF11781.8 gi|292655824|ref|YP_003535721.1| - 0.41 10.4 2.0 0.7 9.6 2.0 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|292655824|ref|YP_003535721.1| - 3.6 7.8 5.1 7.8 6.7 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|292655825|ref|YP_003535722.1| - 0.0041 16.6 2.3 0.0098 15.4 2.0 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|292655825|ref|YP_003535722.1| - 0.0049 16.9 0.2 0.0049 16.9 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|292655825|ref|YP_003535722.1| - 0.0052 16.7 0.7 0.0089 16.0 0.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|292655825|ref|YP_003535722.1| - 0.0095 15.8 0.5 0.015 15.2 0.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|292655825|ref|YP_003535722.1| - 0.021 14.6 1.3 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2752 PF10825.8 gi|292655825|ref|YP_003535722.1| - 0.023 14.7 0.2 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zinc_ribbon_10 PF10058.9 gi|292655825|ref|YP_003535722.1| - 0.026 14.2 0.2 0.032 14.0 0.2 1.2 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DZR PF12773.7 gi|292655825|ref|YP_003535722.1| - 0.033 14.2 2.8 0.057 13.4 2.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|292655825|ref|YP_003535722.1| - 0.036 14.0 0.9 0.051 13.5 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.6 gi|292655825|ref|YP_003535722.1| - 0.036 14.9 0.4 2.3 9.3 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|292655825|ref|YP_003535722.1| - 0.044 13.2 1.3 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|292655825|ref|YP_003535722.1| - 0.044 13.7 1.6 0.13 12.2 0.2 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.12 gi|292655825|ref|YP_003535722.1| - 0.045 13.7 1.7 0.068 13.2 1.7 1.4 1 1 0 1 1 1 0 zinc-ribbons NMD3 PF04981.13 gi|292655825|ref|YP_003535722.1| - 0.048 13.1 0.2 0.048 13.1 0.2 1.0 1 0 0 1 1 1 0 NMD3 family HalOD2 PF18547.1 gi|292655825|ref|YP_003535722.1| - 0.059 13.3 4.4 3.8 7.5 4.4 2.1 1 1 0 1 1 1 0 Halobacterial output domain 2 DUF2757 PF10955.8 gi|292655825|ref|YP_003535722.1| - 0.061 13.6 0.3 12 6.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) Rubredoxin_2 PF18073.1 gi|292655825|ref|YP_003535722.1| - 0.063 13.0 6.6 0.45 10.3 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|292655825|ref|YP_003535722.1| - 0.12 12.0 5.9 1 9.0 0.9 2.5 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|292655825|ref|YP_003535722.1| - 0.12 12.1 4.6 1.9 8.3 4.6 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|292655825|ref|YP_003535722.1| - 0.13 12.4 4.9 4.7 7.4 0.5 2.1 1 1 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|292655825|ref|YP_003535722.1| - 0.22 11.5 3.5 2.8 7.9 3.7 2.1 1 1 1 2 2 2 0 Nudix N-terminal DUF1610 PF07754.11 gi|292655825|ref|YP_003535722.1| - 0.4 10.7 5.6 0.41 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.12 gi|292655825|ref|YP_003535722.1| - 0.43 10.6 4.5 5.2 7.1 4.5 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger eIF-5_eIF-2B PF01873.17 gi|292655826|ref|YP_003535723.1| - 1.2e-35 121.9 0.0 1.5e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|292655826|ref|YP_003535723.1| - 0.017 15.5 0.2 0.032 14.6 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar RecR PF02132.15 gi|292655826|ref|YP_003535723.1| - 0.03 13.9 0.2 0.29 10.7 0.4 2.1 1 1 1 2 2 2 0 RecR protein zf-ribbon_3 PF13248.6 gi|292655826|ref|YP_003535723.1| - 0.047 13.1 0.8 8.5 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292655826|ref|YP_003535723.1| - 0.065 13.2 0.2 0.11 12.4 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|292655826|ref|YP_003535723.1| - 0.12 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292655826|ref|YP_003535723.1| - 0.15 12.2 0.3 0.31 11.2 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf_C2H2_13 PF18508.1 gi|292655826|ref|YP_003535723.1| - 0.22 11.1 0.4 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 Zinc finger domain Prok-RING_1 PF14446.6 gi|292655826|ref|YP_003535723.1| - 0.36 10.8 3.0 14 5.7 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 HalOD2 PF18547.1 gi|292655826|ref|YP_003535723.1| - 0.37 10.7 1.7 1.3 8.9 1.7 1.9 1 1 0 1 1 1 0 Halobacterial output domain 2 UPF0058 PF01893.16 gi|292655827|ref|YP_003535724.1| - 1.6e-20 73.2 0.1 1.8e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.12 gi|292655828|ref|YP_003535725.1| - 3.9e-38 129.8 0.2 4.9e-38 129.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) HhH-GPD PF00730.25 gi|292655829|ref|YP_003535726.1| - 3e-14 53.4 0.0 4.2e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|292655829|ref|YP_003535726.1| - 1.3e-06 28.5 0.0 4.8e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HHH PF00633.23 gi|292655829|ref|YP_003535726.1| - 0.13 12.1 0.2 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif MS_channel PF00924.18 gi|292655830|ref|YP_003535727.1| - 1.9e-27 96.2 1.4 4.7e-27 94.9 1.4 1.8 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF92 PF01940.16 gi|292655830|ref|YP_003535727.1| - 0.39 10.1 4.3 0.36 10.2 3.2 1.3 1 1 0 1 1 1 0 Integral membrane protein DUF92 Glyco_hydro_77 PF02446.17 gi|292655831|ref|YP_003535728.1| - 1.7e-145 485.5 0.0 2e-145 485.2 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2b PF00587.25 gi|292655832|ref|YP_003535729.1| - 6.4e-32 111.0 0.0 1.3e-31 110.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|292655832|ref|YP_003535729.1| - 9.3e-19 67.4 0.4 2.4e-18 66.1 0.4 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|292655832|ref|YP_003535729.1| - 9.4e-14 51.2 0.0 2e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|292655832|ref|YP_003535729.1| - 8.9e-13 48.1 0.2 1.8e-12 47.1 0.2 1.5 1 0 0 1 1 1 1 TGS domain DUF2048 PF09752.9 gi|292655833|ref|YP_003535730.1| - 1.5e-05 24.3 0.0 2.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Abhydrolase domain containing 18 Abhydrolase_6 PF12697.7 gi|292655833|ref|YP_003535730.1| - 4.5 7.8 32.9 0.069 13.8 18.5 3.2 2 2 0 2 2 2 0 Alpha/beta hydrolase family MFS_1 PF07690.16 gi|292655834|ref|YP_003535731.1| - 2.4e-24 85.9 59.1 4.8e-19 68.5 37.1 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily ArAE_1 PF06081.11 gi|292655834|ref|YP_003535731.1| - 0.00086 19.5 2.9 0.0025 18.0 2.9 1.8 1 0 0 1 1 1 1 Aromatic acid exporter family member 1 DUF1700 PF08006.11 gi|292655834|ref|YP_003535731.1| - 0.17 11.4 0.7 0.42 10.1 0.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) DUF389 PF04087.14 gi|292655836|ref|YP_003535733.1| - 0.0045 17.0 0.6 0.0049 16.9 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF389) TrkA_N PF02254.18 gi|292655837|ref|YP_003535734.1| - 3.6e-20 72.4 1.3 1.1e-19 70.8 1.3 1.9 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|292655837|ref|YP_003535734.1| - 3.3e-13 49.8 0.3 6.7e-12 45.5 0.1 2.3 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|292655837|ref|YP_003535734.1| - 2e-07 31.5 0.3 9.9e-07 29.3 0.0 2.2 2 1 1 3 3 3 1 DHHA1 domain F420_oxidored PF03807.17 gi|292655837|ref|YP_003535734.1| - 5e-07 30.2 0.1 2.1e-06 28.2 0.1 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|292655837|ref|YP_003535734.1| - 1.2e-06 28.3 0.0 2.5e-05 24.0 0.0 2.3 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|292655837|ref|YP_003535734.1| - 2.3e-06 27.9 0.5 8.6e-06 26.0 0.2 2.2 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|292655837|ref|YP_003535734.1| - 2.3e-05 24.0 0.1 4.6e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_N PF03721.14 gi|292655837|ref|YP_003535734.1| - 0.00035 20.2 0.1 0.00082 19.0 0.0 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|292655837|ref|YP_003535734.1| - 0.00065 19.9 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Epimerase PF01370.21 gi|292655837|ref|YP_003535734.1| - 0.0013 18.2 0.1 0.0024 17.4 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.23 gi|292655837|ref|YP_003535734.1| - 0.0015 18.5 0.0 0.0028 17.6 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|292655837|ref|YP_003535734.1| - 0.0026 18.2 1.3 0.0076 16.7 0.7 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|292655837|ref|YP_003535734.1| - 0.0086 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|292655837|ref|YP_003535734.1| - 0.0087 16.0 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|292655837|ref|YP_003535734.1| - 0.0089 16.1 0.0 0.02 15.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|292655837|ref|YP_003535734.1| - 0.035 13.5 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|292655837|ref|YP_003535734.1| - 0.037 13.3 0.2 0.09 12.1 0.2 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|292655837|ref|YP_003535734.1| - 0.04 13.4 0.3 0.098 12.1 0.1 1.8 2 0 0 2 2 2 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292655837|ref|YP_003535734.1| - 0.042 13.4 1.9 0.14 11.7 0.4 2.1 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_8 PF13450.6 gi|292655837|ref|YP_003535734.1| - 0.062 13.5 0.0 0.18 12.1 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|292655837|ref|YP_003535734.1| - 0.13 12.8 0.5 0.35 11.4 0.2 1.9 1 1 1 2 2 2 0 XdhC Rossmann domain PRC PF05239.16 gi|292655838|ref|YP_003535735.1| - 1.4e-13 50.7 0.7 1.8e-13 50.3 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|292655838|ref|YP_003535735.1| - 0.027 14.8 0.2 0.077 13.3 0.2 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) RcnB PF11776.8 gi|292655838|ref|YP_003535735.1| - 0.07 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator LUD_dom PF02589.15 gi|292655839|ref|YP_003535736.1| - 9.6e-42 142.8 0.1 1.5e-41 142.2 0.1 1.4 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|292655839|ref|YP_003535736.1| - 1.7e-08 34.8 3.5 3.9e-08 33.6 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292655839|ref|YP_003535736.1| - 7.7e-08 32.3 3.1 0.00052 20.1 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|292655839|ref|YP_003535736.1| - 1.8e-06 28.4 2.3 3.8e-06 27.3 2.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292655839|ref|YP_003535736.1| - 3e-06 27.3 5.1 7.2e-06 26.1 5.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|292655839|ref|YP_003535736.1| - 4.6e-06 27.1 4.3 1.2e-05 25.7 4.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|292655839|ref|YP_003535736.1| - 0.00024 20.8 13.5 0.0013 18.4 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|292655839|ref|YP_003535736.1| - 0.00042 20.2 15.3 0.0055 16.7 4.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|292655839|ref|YP_003535736.1| - 0.00078 19.4 12.3 0.0017 18.3 2.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|292655839|ref|YP_003535736.1| - 0.0017 19.3 4.1 0.18 12.8 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|292655839|ref|YP_003535736.1| - 0.0018 18.5 1.7 0.32 11.2 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|292655839|ref|YP_003535736.1| - 0.0053 16.9 11.8 0.066 13.3 11.9 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|292655839|ref|YP_003535736.1| - 0.055 14.3 0.7 0.055 14.3 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|292655839|ref|YP_003535736.1| - 0.059 13.1 3.1 0.069 12.9 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|292655839|ref|YP_003535736.1| - 0.23 12.5 17.3 0.25 12.4 4.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|292655839|ref|YP_003535736.1| - 0.35 11.5 13.2 0.12 12.9 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain LUD_dom PF02589.15 gi|292655840|ref|YP_003535737.1| - 2.4e-12 47.0 0.0 3.4e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 LUD domain HTH_20 PF12840.7 gi|292655842|ref|YP_003535739.1| - 0.00014 21.9 0.3 0.00025 21.0 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292655842|ref|YP_003535739.1| - 0.0002 21.3 0.0 0.00034 20.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|292655842|ref|YP_003535739.1| - 0.018 15.2 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655842|ref|YP_003535739.1| - 0.02 14.7 0.1 0.039 13.7 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|292655842|ref|YP_003535739.1| - 0.051 13.5 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|292655842|ref|YP_003535739.1| - 0.099 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Lactate_perm PF02652.14 gi|292655843|ref|YP_003535740.1| - 1.2e-107 360.9 34.5 1.6e-107 360.4 34.5 1.2 1 0 0 1 1 1 1 L-lactate permease FAD-oxidase_C PF02913.19 gi|292655844|ref|YP_003535741.1| - 2.5e-64 217.3 0.2 5.8e-64 216.1 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|292655844|ref|YP_003535741.1| - 2.9e-42 143.7 0.3 6.3e-42 142.6 0.3 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|292655844|ref|YP_003535741.1| - 8.6e-09 35.8 3.6 1.6e-08 35.0 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|292655844|ref|YP_003535741.1| - 1.1e-07 32.2 4.5 2.3e-07 31.2 4.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|292655844|ref|YP_003535741.1| - 1.8e-05 24.9 0.0 0.0011 19.2 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|292655844|ref|YP_003535741.1| - 0.0023 18.0 4.1 0.017 15.2 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292655844|ref|YP_003535741.1| - 0.013 15.6 3.1 0.06 13.5 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|292655844|ref|YP_003535741.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|292655844|ref|YP_003535741.1| - 0.33 11.1 7.6 0.097 12.8 0.5 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|292655844|ref|YP_003535741.1| - 4.1 8.1 7.9 28 5.4 8.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CBS PF00571.28 gi|292655845|ref|YP_003535742.1| - 2.3e-18 66.4 3.4 4.5e-09 36.6 0.3 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|292655845|ref|YP_003535742.1| - 1.4e-07 31.6 0.1 2.5e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|292655845|ref|YP_003535742.1| - 0.082 13.0 0.1 0.44 10.6 0.1 1.9 1 1 0 1 1 1 0 Putative ParB-like nuclease Aminotran_1_2 PF00155.21 gi|292655846|ref|YP_003535743.1| - 2.2e-28 99.5 0.0 3.8e-28 98.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|292655846|ref|YP_003535743.1| - 0.21 10.5 0.0 2.4 7.0 0.0 2.1 1 1 0 1 1 1 0 Aminotransferase class-V HTH_20 PF12840.7 gi|292655847|ref|YP_003535744.1| - 6.6e-09 35.7 2.3 5e-08 32.9 0.7 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292655847|ref|YP_003535744.1| - 7.2e-07 29.0 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|292655847|ref|YP_003535744.1| - 7.3e-07 29.0 0.7 1.7e-06 27.8 0.7 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|292655847|ref|YP_003535744.1| - 4.4e-06 26.5 0.0 8.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292655847|ref|YP_003535744.1| - 0.00016 21.4 1.7 0.00029 20.6 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|292655847|ref|YP_003535744.1| - 0.00024 21.2 0.0 0.00051 20.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|292655847|ref|YP_003535744.1| - 0.00041 20.3 0.1 0.00067 19.6 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|292655847|ref|YP_003535744.1| - 0.00072 19.1 0.1 0.0016 18.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|292655847|ref|YP_003535744.1| - 0.0014 18.5 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|292655847|ref|YP_003535744.1| - 0.0022 17.8 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|292655847|ref|YP_003535744.1| - 0.0037 17.2 0.0 0.0081 16.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Gly_kinase PF02595.15 gi|292655847|ref|YP_003535744.1| - 0.0042 16.1 0.0 0.0062 15.6 0.0 1.1 1 0 0 1 1 1 1 Glycerate kinase family Rrf2 PF02082.20 gi|292655847|ref|YP_003535744.1| - 0.013 15.8 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Trp_repressor PF01371.19 gi|292655847|ref|YP_003535744.1| - 0.027 14.6 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_30 PF13556.6 gi|292655847|ref|YP_003535744.1| - 0.053 13.3 0.4 1.2 9.0 0.1 2.8 1 1 2 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_CodY PF08222.11 gi|292655847|ref|YP_003535744.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_28 PF13518.6 gi|292655847|ref|YP_003535744.1| - 0.058 13.5 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|292655847|ref|YP_003535744.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|292655847|ref|YP_003535744.1| - 0.14 11.9 0.2 0.3 10.9 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_6 PF01418.17 gi|292655847|ref|YP_003535744.1| - 0.22 11.6 0.0 0.53 10.3 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family DUF123 PF01986.16 gi|292655848|ref|YP_003535745.1| - 1.8e-31 108.5 0.0 2.3e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF393 PF04134.12 gi|292655849|ref|YP_003535746.1| - 5.7e-06 27.6 0.2 8e-06 27.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Erythro_esteras PF05139.14 gi|292655849|ref|YP_003535746.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Erythromycin esterase DEAD PF00270.29 gi|292655850|ref|YP_003535747.1| - 1.2e-22 80.5 0.0 1.7e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|292655850|ref|YP_003535747.1| - 1.2e-21 77.2 0.1 4.1e-21 75.5 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|292655850|ref|YP_003535747.1| - 2e-10 41.0 0.0 6.2e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain RGP PF03214.13 gi|292655851|ref|YP_003535748.1| - 1.9e-16 60.2 0.0 2.6e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.6 gi|292655852|ref|YP_003535749.1| - 8.1e-15 54.9 0.0 1.1e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|292655852|ref|YP_003535749.1| - 1.3e-11 44.7 1.2 1.3e-10 41.4 1.2 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|292655852|ref|YP_003535749.1| - 4.2e-11 43.2 0.1 6.1e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|292655852|ref|YP_003535749.1| - 2.1e-08 34.5 0.7 6.4e-08 32.9 0.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|292655852|ref|YP_003535749.1| - 0.027 14.3 4.3 0.058 13.3 4.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|292655852|ref|YP_003535749.1| - 0.076 12.4 0.8 0.2 11.0 0.8 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|292655853|ref|YP_003535750.1| - 1.2e-27 96.8 40.9 5.2e-15 55.7 15.0 3.6 3 2 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|292655854|ref|YP_003535751.1| - 2.1e-34 119.0 0.0 3.3e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|292655854|ref|YP_003535751.1| - 1.2e-06 28.5 0.2 4.6e-06 26.7 0.0 2.1 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 gi|292655854|ref|YP_003535751.1| - 5.5e-06 26.4 0.5 0.064 13.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|292655854|ref|YP_003535751.1| - 0.00034 20.6 0.0 0.00058 19.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|292655854|ref|YP_003535751.1| - 0.0017 18.7 0.2 0.0036 17.7 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|292655854|ref|YP_003535751.1| - 0.0029 18.0 0.0 0.026 14.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|292655854|ref|YP_003535751.1| - 0.011 16.0 0.7 0.034 14.4 0.7 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|292655854|ref|YP_003535751.1| - 0.017 15.0 0.1 0.031 14.2 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|292655854|ref|YP_003535751.1| - 0.034 14.3 0.0 0.093 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|292655854|ref|YP_003535751.1| - 0.036 13.8 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|292655854|ref|YP_003535751.1| - 0.07 13.4 0.3 0.38 11.0 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|292655854|ref|YP_003535751.1| - 0.12 12.6 0.1 0.71 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|292655854|ref|YP_003535751.1| - 0.22 10.7 0.0 0.34 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|292655854|ref|YP_003535751.1| - 0.54 10.3 1.8 0.9 9.5 0.1 2.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) PMT_2 PF13231.6 gi|292655855|ref|YP_003535752.1| - 5.6e-10 39.7 14.5 5.6e-10 39.7 14.5 2.4 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase MFS_1 PF07690.16 gi|292655856|ref|YP_003535753.1| - 1.7e-21 76.6 25.5 2.3e-21 76.1 25.5 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2417 PF10329.9 gi|292655856|ref|YP_003535753.1| - 0.086 12.3 2.0 0.39 10.1 0.2 2.2 2 0 0 2 2 2 0 Region of unknown function (DUF2417) Alpha-amylase PF00128.24 gi|292655857|ref|YP_003535754.1| - 2e-49 169.0 0.5 7.8e-47 160.5 0.5 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|292655857|ref|YP_003535754.1| - 1.1e-05 25.7 0.0 3.1e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|292655857|ref|YP_003535754.1| - 0.00038 20.5 0.0 0.00093 19.3 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|292655857|ref|YP_003535754.1| - 0.0019 17.4 0.0 0.0052 15.9 0.0 1.6 2 0 0 2 2 2 1 Glycogen debranching enzyme, glucanotransferase domain PKD PF00801.20 gi|292655857|ref|YP_003535754.1| - 0.0081 16.0 0.1 0.0081 16.0 0.1 2.2 2 0 0 2 2 2 1 PKD domain Surp PF01805.20 gi|292655857|ref|YP_003535754.1| - 0.036 14.1 0.6 1.5 8.9 0.0 2.8 2 0 0 2 2 2 0 Surp module Radical_SAM PF04055.21 gi|292655857|ref|YP_003535754.1| - 0.1 12.9 0.0 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 Radical SAM superfamily Glucodextran_N PF09137.11 gi|292655858|ref|YP_003535755.1| - 1.2e-76 257.8 1.4 2.1e-75 253.7 0.2 2.5 2 0 0 2 2 2 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|292655858|ref|YP_003535755.1| - 2.1e-30 105.9 1.1 2.2e-21 76.2 0.0 4.2 3 1 0 3 3 3 3 Glycosyl hydrolases family 15 Glucodextran_B PF09136.10 gi|292655858|ref|YP_003535755.1| - 0.1 13.0 1.8 0.79 10.1 1.0 2.7 2 0 0 2 2 2 0 Glucodextranase, domain B Polyketide_cyc PF03364.20 gi|292655859|ref|YP_003535756.1| - 7.9e-12 45.5 0.1 1.1e-11 45.1 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|292655859|ref|YP_003535756.1| - 7.3e-09 36.0 1.7 8.7e-09 35.8 1.7 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Response_reg PF00072.24 gi|292655860|ref|YP_003535757.1| - 7.9e-22 77.5 0.0 1.7e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|292655860|ref|YP_003535757.1| - 6.9e-15 54.8 0.1 2e-14 53.4 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|292655860|ref|YP_003535757.1| - 3.3e-14 53.3 0.0 1.1e-13 51.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|292655860|ref|YP_003535757.1| - 2.8e-07 31.2 0.3 1.3e-06 29.1 0.1 2.3 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|292655860|ref|YP_003535757.1| - 7.2e-07 29.4 0.1 2.3e-06 27.8 0.1 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|292655860|ref|YP_003535757.1| - 2e-06 27.8 0.0 4.4e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|292655860|ref|YP_003535757.1| - 2.3e-06 28.0 0.0 6.5e-06 26.5 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|292655860|ref|YP_003535757.1| - 0.00012 22.4 1.0 0.00055 20.2 0.1 2.5 2 1 1 3 3 3 1 GAF domain PAS_9 PF13426.7 gi|292655860|ref|YP_003535757.1| - 0.0004 20.6 0.0 0.0012 19.0 0.0 1.9 1 1 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|292655860|ref|YP_003535757.1| - 0.0081 16.1 0.5 0.027 14.4 0.2 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|292655860|ref|YP_003535757.1| - 0.027 14.2 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain EamA PF00892.20 gi|292655861|ref|YP_003535758.1| - 1.6e-29 102.8 26.0 5.6e-17 62.2 9.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|292655861|ref|YP_003535758.1| - 0.043 13.3 4.7 0.0089 15.6 1.6 1.5 2 0 0 2 2 2 0 Solute carrier family 35 Methyltransf_11 PF08241.12 gi|292655862|ref|YP_003535759.1| - 8.2e-22 77.7 0.2 1.7e-21 76.6 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292655862|ref|YP_003535759.1| - 1.6e-17 64.0 0.1 4.3e-17 62.6 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292655862|ref|YP_003535759.1| - 1.1e-15 57.9 0.0 2e-15 57.0 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292655862|ref|YP_003535759.1| - 5.8e-10 39.2 0.0 9.2e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292655862|ref|YP_003535759.1| - 5.3e-08 32.5 0.0 8.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|292655862|ref|YP_003535759.1| - 5.2e-06 27.1 0.0 1e-05 26.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|292655862|ref|YP_003535759.1| - 6.6e-05 21.7 0.0 8.9e-05 21.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PBP_like PF12727.7 gi|292655862|ref|YP_003535759.1| - 0.018 14.2 1.9 1.7 7.7 0.9 2.8 3 0 0 3 3 3 0 PBP superfamily domain QueC PF06508.13 gi|292655863|ref|YP_003535760.1| - 2.1e-72 243.0 0.0 2.4e-72 242.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|292655863|ref|YP_003535760.1| - 2e-06 27.5 0.0 4e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|292655863|ref|YP_003535760.1| - 0.00023 20.1 0.0 0.0003 19.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|292655863|ref|YP_003535760.1| - 0.00041 20.1 0.2 0.00054 19.7 0.2 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|292655863|ref|YP_003535760.1| - 0.0083 15.3 0.0 0.014 14.5 0.0 1.4 1 1 0 1 1 1 1 NAD synthase DUF2525 PF10733.9 gi|292655863|ref|YP_003535760.1| - 0.077 13.3 0.2 0.19 12.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2525) Radical_SAM PF04055.21 gi|292655864|ref|YP_003535761.1| - 9.5e-21 74.9 0.2 3.9e-20 72.9 0.2 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|292655864|ref|YP_003535761.1| - 1.5e-12 47.6 0.0 2.5e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|292655864|ref|YP_003535761.1| - 4.7e-07 30.2 0.0 7.4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|292655865|ref|YP_003535762.1| - 4.9e-22 78.2 0.0 6.1e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase 4HBT PF03061.22 gi|292655866|ref|YP_003535763.1| - 3.6e-11 43.2 0.4 8.4e-11 42.1 0.0 1.8 2 1 0 2 2 2 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|292655866|ref|YP_003535763.1| - 8.5e-11 42.4 0.0 1.1e-10 42.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|292655866|ref|YP_003535763.1| - 6.3e-07 28.9 0.0 5.8e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase Sigma70_r4_2 PF08281.12 gi|292655867|ref|YP_003535764.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Fer2 PF00111.27 gi|292655868|ref|YP_003535765.1| - 7.4e-09 35.5 0.5 2.4e-08 33.8 0.3 2.0 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|292655868|ref|YP_003535765.1| - 0.0098 15.9 0.1 0.017 15.1 0.0 1.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain ERCC3_RAD25_C PF16203.5 gi|292655869|ref|YP_003535766.1| - 1.7e-24 86.4 0.0 2.8e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|292655869|ref|YP_003535766.1| - 5.5e-16 59.0 0.0 9.6e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|292655869|ref|YP_003535766.1| - 4.8e-12 45.3 0.0 7.3e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|292655869|ref|YP_003535766.1| - 2.1e-10 40.9 0.0 6.3e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|292655869|ref|YP_003535766.1| - 8.9e-07 28.8 0.0 1.7e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|292655869|ref|YP_003535766.1| - 0.00023 20.9 0.0 0.0008 19.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|292655869|ref|YP_003535766.1| - 0.0031 16.8 0.0 0.0057 15.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|292655869|ref|YP_003535766.1| - 0.0095 16.2 0.2 0.2 11.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain MarR_2 PF12802.7 gi|292655869|ref|YP_003535766.1| - 0.012 15.5 0.1 0.034 14.0 0.1 1.8 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|292655869|ref|YP_003535766.1| - 0.023 14.6 0.0 0.072 13.0 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Flavi_DEAD PF07652.14 gi|292655869|ref|YP_003535766.1| - 0.026 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain HTH_20 PF12840.7 gi|292655869|ref|YP_003535766.1| - 0.074 13.1 0.0 0.28 11.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.11 gi|292655871|ref|YP_003535768.1| - 8.2e-21 73.8 0.1 2.7e-20 72.1 0.1 1.9 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|292655871|ref|YP_003535768.1| - 1.4e-15 57.7 0.1 1e-14 55.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292655871|ref|YP_003535768.1| - 1.6e-10 41.6 1.3 5.6e-10 39.9 0.2 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|292655871|ref|YP_003535768.1| - 4.7e-06 27.1 0.2 1.8e-05 25.2 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292655871|ref|YP_003535768.1| - 6.1e-06 26.3 0.0 2e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|292655871|ref|YP_003535768.1| - 7e-06 25.8 0.0 1.7e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|292655871|ref|YP_003535768.1| - 9.1e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|292655871|ref|YP_003535768.1| - 0.00019 21.5 0.0 0.0015 18.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|292655871|ref|YP_003535768.1| - 0.00096 18.4 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.29 gi|292655871|ref|YP_003535768.1| - 0.0012 18.7 1.3 0.15 11.8 1.3 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_2 PF07724.14 gi|292655871|ref|YP_003535768.1| - 0.0015 18.6 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TniB PF05621.11 gi|292655871|ref|YP_003535768.1| - 0.0018 17.7 0.0 0.0042 16.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|292655871|ref|YP_003535768.1| - 0.0033 17.8 0.0 0.0069 16.8 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 gi|292655871|ref|YP_003535768.1| - 0.0047 16.7 0.1 0.0091 15.7 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|292655871|ref|YP_003535768.1| - 0.013 15.1 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|292655871|ref|YP_003535768.1| - 0.017 14.5 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|292655871|ref|YP_003535768.1| - 0.02 14.4 1.5 6.2 6.2 0.0 2.9 2 1 1 3 3 3 0 PhoH-like protein IstB_IS21 PF01695.17 gi|292655871|ref|YP_003535768.1| - 0.027 14.2 0.6 0.79 9.4 0.0 2.3 1 1 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|292655871|ref|YP_003535768.1| - 0.038 13.3 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.17 gi|292655871|ref|YP_003535768.1| - 0.039 14.0 0.1 0.12 12.4 0.1 1.8 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_assoc_2 PF16193.5 gi|292655871|ref|YP_003535768.1| - 0.048 14.0 0.4 0.54 10.6 0.2 2.4 1 1 1 2 2 2 0 AAA C-terminal domain KAP_NTPase PF07693.14 gi|292655871|ref|YP_003535768.1| - 0.057 12.6 0.6 0.85 8.8 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain AAA_10 PF12846.7 gi|292655871|ref|YP_003535768.1| - 0.057 12.3 0.0 0.2 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.9 gi|292655871|ref|YP_003535768.1| - 0.074 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|292655871|ref|YP_003535768.1| - 0.11 11.8 0.1 0.22 10.8 0.1 1.5 1 0 0 1 1 1 0 KaiC MarR_2 PF12802.7 gi|292655872|ref|YP_003535769.1| - 0.0027 17.6 0.2 0.007 16.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|292655872|ref|YP_003535769.1| - 0.04 13.9 0.0 0.24 11.4 0.0 2.3 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|292655872|ref|YP_003535769.1| - 0.074 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|292655872|ref|YP_003535769.1| - 0.23 11.5 0.0 0.45 10.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Crp PF00325.20 gi|292655872|ref|YP_003535769.1| - 0.65 9.7 2.3 0.76 9.5 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family TBP PF00352.21 gi|292655873|ref|YP_003535770.1| - 6.1e-58 192.8 0.0 8.6e-28 96.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|292655873|ref|YP_003535770.1| - 3e-06 27.2 0.0 0.005 16.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|292655873|ref|YP_003535770.1| - 0.069 13.2 0.0 1.7 8.7 0.0 2.1 1 1 1 2 2 2 0 DUF218 domain Chlamy_scaf PF09675.10 gi|292655874|ref|YP_003535771.1| - 0.036 14.4 0.1 0.071 13.5 0.0 1.6 2 0 0 2 2 2 0 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) HTH_15 PF12324.8 gi|292655874|ref|YP_003535771.1| - 0.055 13.4 0.3 3.2 7.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase FaeA PF04703.12 gi|292655874|ref|YP_003535771.1| - 0.056 13.8 0.0 0.15 12.4 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein SWIM PF04434.17 gi|292655876|ref|YP_003535773.1| - 3.4e-06 26.6 0.2 7.1e-06 25.6 0.2 1.5 1 0 0 1 1 1 1 SWIM zinc finger DUF2274 PF10038.9 gi|292655876|ref|YP_003535773.1| - 0.0088 16.5 0.1 0.029 14.8 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2274) A_deamin PF02137.18 gi|292655876|ref|YP_003535773.1| - 0.18 11.2 0.1 0.3 10.5 0.1 1.2 1 0 0 1 1 1 0 Adenosine-deaminase (editase) domain TPR_14 PF13428.6 gi|292655876|ref|YP_003535773.1| - 0.89 10.5 8.6 29 5.8 0.0 5.3 5 0 0 5 5 5 0 Tetratricopeptide repeat ERCC3_RAD25_C PF16203.5 gi|292655877|ref|YP_003535774.1| - 1.9e-23 83.0 0.1 2.8e-23 82.4 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|292655877|ref|YP_003535774.1| - 9.8e-19 68.0 0.0 3.9e-18 66.0 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|292655877|ref|YP_003535774.1| - 2.2e-16 60.2 0.0 5.7e-16 58.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|292655877|ref|YP_003535774.1| - 3e-14 52.6 0.3 1.2e-13 50.7 0.3 2.1 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|292655877|ref|YP_003535774.1| - 1.9e-05 24.5 0.1 0.00011 22.0 0.1 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF790 PF05626.11 gi|292655878|ref|YP_003535775.1| - 9.4e-145 482.2 0.0 1.1e-144 482.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Calci_bind_CcbP PF11535.8 gi|292655879|ref|YP_003535776.1| - 1e-37 128.8 0.8 1.2e-37 128.6 0.8 1.0 1 0 0 1 1 1 1 Calcium binding PRiA4_ORF3 PF07929.11 gi|292655880|ref|YP_003535777.1| - 0.0002 21.1 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF3141 PF11339.8 gi|292655881|ref|YP_003535778.1| - 0.04 12.3 0.1 0.06 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) HTH_16 PF12645.7 gi|292655882|ref|YP_003535779.1| - 0.016 15.3 0.6 0.036 14.1 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain zf-C2H2_6 PF13912.6 gi|292655882|ref|YP_003535779.1| - 0.059 13.4 0.3 0.11 12.5 0.3 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|292655882|ref|YP_003535779.1| - 0.11 13.1 0.3 0.2 12.2 0.3 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type Pheromone PF08015.11 gi|292655882|ref|YP_003535779.1| - 0.17 12.9 3.5 0.21 12.7 1.5 2.2 2 1 1 3 3 3 0 Fungal mating-type pheromone PRiA4_ORF3 PF07929.11 gi|292655883|ref|YP_003535780.1| - 1.7e-16 60.4 0.1 2.5e-16 59.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein BNR PF02012.20 gi|292655883|ref|YP_003535780.1| - 2.5 8.5 5.3 2.7 8.4 0.3 3.1 3 0 0 3 3 3 0 BNR/Asp-box repeat SWIM PF04434.17 gi|292655884|ref|YP_003535781.1| - 4.4e-07 29.4 0.1 8.3e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger RasGAP_C PF03836.15 gi|292655884|ref|YP_003535781.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RasGAP C-terminus DEAD PF00270.29 gi|292655885|ref|YP_003535782.1| - 6.5e-25 87.9 0.0 1.1e-24 87.2 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|292655885|ref|YP_003535782.1| - 8.6e-18 64.9 0.1 2e-17 63.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|292655885|ref|YP_003535782.1| - 1.1e-08 35.3 0.0 5.5e-08 33.1 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|292655885|ref|YP_003535782.1| - 3.9e-05 23.7 0.0 7.4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|292655886|ref|YP_003535783.1| - 8.5e-05 22.6 0.0 0.00058 19.9 0.0 2.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|292655886|ref|YP_003535783.1| - 0.00021 21.8 0.0 0.00038 21.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF2800 PF10926.8 gi|292655887|ref|YP_003535784.1| - 0.00014 21.2 0.2 0.00021 20.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Fzo_mitofusin PF04799.13 gi|292655887|ref|YP_003535784.1| - 0.023 14.2 1.1 0.1 12.2 0.2 2.1 2 0 0 2 2 2 0 fzo-like conserved region DivIC PF04977.15 gi|292655887|ref|YP_003535784.1| - 0.044 13.6 1.2 0.25 11.1 0.1 2.6 2 1 0 2 2 2 0 Septum formation initiator Dabb PF07876.12 gi|292655887|ref|YP_003535784.1| - 0.056 14.1 0.4 1.1 9.9 0.0 2.9 2 1 1 3 3 3 0 Stress responsive A/B Barrel Domain XhlA PF10779.9 gi|292655887|ref|YP_003535784.1| - 2.2 8.6 4.5 1.9 8.7 1.1 2.7 2 1 1 3 3 3 0 Haemolysin XhlA Flavi_NS2A PF01005.19 gi|292655891|ref|YP_003535788.1| - 0.02 15.1 1.1 0.022 14.9 1.1 1.1 1 0 0 1 1 1 0 Flavivirus non-structural protein NS2A DUF202 PF02656.15 gi|292655891|ref|YP_003535788.1| - 1.2 9.6 8.1 0.4 11.2 1.7 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF202) E1-E2_ATPase PF00122.20 gi|292655892|ref|YP_003535789.1| - 1.8e-47 161.2 1.6 4.7e-47 159.8 1.6 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|292655892|ref|YP_003535789.1| - 8.4e-47 160.2 9.5 2e-46 158.9 9.5 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|292655892|ref|YP_003535789.1| - 1.8e-30 105.2 0.3 1.2e-15 57.7 0.0 3.7 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|292655892|ref|YP_003535789.1| - 8e-07 29.0 1.0 0.00086 19.1 0.6 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292655892|ref|YP_003535789.1| - 5.4e-05 23.7 0.6 0.00022 21.7 0.6 2.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|292655892|ref|YP_003535789.1| - 0.00047 20.2 2.6 0.0019 18.3 0.0 3.3 4 1 0 4 4 4 1 Haloacid dehalogenase-like hydrolase Fer2_BFD PF04324.15 gi|292655892|ref|YP_003535789.1| - 0.039 14.3 2.2 0.27 11.6 0.1 3.0 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain HTH_AsnC-type PF13404.6 gi|292655893|ref|YP_003535790.1| - 5.8e-16 58.0 1.3 5.8e-16 58.0 1.3 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292655893|ref|YP_003535790.1| - 1.4e-15 56.6 0.1 4.6e-15 54.9 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292655893|ref|YP_003535790.1| - 7.1e-08 32.2 0.1 1.9e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|292655893|ref|YP_003535790.1| - 2.5e-06 27.3 1.0 5.8e-06 26.1 0.2 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|292655893|ref|YP_003535790.1| - 1.2e-05 25.2 0.0 2.1e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292655893|ref|YP_003535790.1| - 1.5e-05 24.9 0.5 5.5e-05 23.1 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292655893|ref|YP_003535790.1| - 6.1e-05 22.7 0.0 0.00015 21.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain YHS PF04945.13 gi|292655893|ref|YP_003535790.1| - 0.00039 20.5 0.6 0.00069 19.7 0.6 1.4 1 0 0 1 1 1 1 YHS domain HTH_28 PF13518.6 gi|292655893|ref|YP_003535790.1| - 0.0009 19.3 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|292655893|ref|YP_003535790.1| - 0.0011 19.3 1.5 0.0018 18.6 1.5 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_Tnp_ISL3 PF13542.6 gi|292655893|ref|YP_003535790.1| - 0.0012 18.2 0.0 0.003 16.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|292655893|ref|YP_003535790.1| - 0.0034 17.1 0.0 0.0075 16.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain LIM PF00412.22 gi|292655893|ref|YP_003535790.1| - 0.0086 16.3 0.5 0.014 15.6 0.5 1.3 1 0 0 1 1 1 1 LIM domain HTH_1 PF00126.27 gi|292655893|ref|YP_003535790.1| - 0.031 14.2 0.0 0.072 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Radical_SAM PF04055.21 gi|292655893|ref|YP_003535790.1| - 0.1 12.9 0.1 0.92 9.9 0.0 2.1 1 1 1 2 2 2 0 Radical SAM superfamily TrmB PF01978.19 gi|292655893|ref|YP_003535790.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HECT_2 PF09814.9 gi|292655893|ref|YP_003535790.1| - 0.12 11.2 0.2 0.22 10.4 0.0 1.5 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding zf-FCS PF06467.14 gi|292655893|ref|YP_003535790.1| - 0.14 12.2 3.6 0.21 11.5 3.6 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DprA_WH PF17782.1 gi|292655893|ref|YP_003535790.1| - 0.14 12.3 1.0 0.24 11.5 0.3 1.8 2 0 0 2 2 2 0 DprA winged helix domain ATPase-cat_bd PF12156.8 gi|292655893|ref|YP_003535790.1| - 0.54 11.0 2.7 0.91 10.3 2.7 1.3 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HMA PF00403.26 gi|292655894|ref|YP_003535791.1| - 1.7e-18 66.8 0.4 1.8e-18 66.7 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2398 PF09661.10 gi|292655895|ref|YP_003535792.1| - 0.041 13.1 0.3 0.048 12.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2398) Nucleos_tra2_N PF01773.20 gi|292655895|ref|YP_003535792.1| - 0.099 13.3 2.9 0.14 12.8 2.7 1.4 1 1 0 1 1 1 0 Na+ dependent nucleoside transporter N-terminus FixQ PF05545.11 gi|292655895|ref|YP_003535792.1| - 0.83 9.7 4.0 11 6.1 0.0 2.4 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ TPPK_C PF12555.8 gi|292655895|ref|YP_003535792.1| - 2.1 8.5 11.7 0.22 11.6 2.9 2.1 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal RIG-I_C-RD PF11648.8 gi|292655896|ref|YP_003535793.1| - 0.015 15.5 0.1 0.031 14.5 0.0 1.6 1 1 0 1 1 1 0 C-terminal domain of RIG-I Rhodanese_C PF12368.8 gi|292655896|ref|YP_003535793.1| - 0.072 13.5 0.2 7.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Rhodanase C-terminal zf-UBP PF02148.19 gi|292655896|ref|YP_003535793.1| - 4.6 7.7 6.1 50 4.3 6.1 2.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Acetyltransf_3 PF13302.7 gi|292655897|ref|YP_003535794.1| - 1.7e-13 51.5 0.0 2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292655897|ref|YP_003535794.1| - 2.7e-12 46.9 0.0 3.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292655897|ref|YP_003535794.1| - 1.4e-10 41.2 0.0 1.9e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292655897|ref|YP_003535794.1| - 4e-09 36.8 0.0 6.1e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292655897|ref|YP_003535794.1| - 1.7e-07 31.1 0.0 2.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|292655897|ref|YP_003535794.1| - 1.7e-05 24.9 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|292655897|ref|YP_003535794.1| - 0.00011 22.3 0.0 0.00014 22.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Fer4_15 PF13459.6 gi|292655897|ref|YP_003535794.1| - 0.0016 19.1 0.1 0.005 17.5 0.1 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Acetyltransf_8 PF13523.6 gi|292655897|ref|YP_003535794.1| - 0.023 14.4 0.2 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292655897|ref|YP_003535794.1| - 0.061 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DoxX PF07681.12 gi|292655898|ref|YP_003535795.1| - 1.2e-06 29.0 11.9 1.2e-06 29.0 11.9 1.8 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|292655898|ref|YP_003535795.1| - 0.0018 18.2 2.7 0.0035 17.3 2.7 1.5 1 1 0 1 1 1 1 TQO small subunit DoxD Pyr_redox_2 PF07992.14 gi|292655899|ref|YP_003535796.1| - 1.6e-09 37.4 0.2 1.6e-08 34.1 0.3 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292655899|ref|YP_003535796.1| - 3.6e-06 26.8 2.2 3.6e-06 26.8 2.2 1.9 1 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|292655899|ref|YP_003535796.1| - 4.2e-06 26.9 0.4 1.3e-05 25.4 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|292655899|ref|YP_003535796.1| - 7.6e-06 25.4 0.4 7.7e-05 22.1 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|292655899|ref|YP_003535796.1| - 7.8e-06 25.5 1.8 7.8e-06 25.5 1.8 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|292655899|ref|YP_003535796.1| - 3e-05 23.3 0.2 5.1e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|292655899|ref|YP_003535796.1| - 6.5e-05 22.2 0.6 6.5e-05 22.2 0.6 2.3 2 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|292655899|ref|YP_003535796.1| - 0.00011 21.1 0.4 0.00027 19.8 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|292655899|ref|YP_003535796.1| - 0.00026 20.4 0.0 0.015 14.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292655899|ref|YP_003535796.1| - 0.00045 20.7 0.1 0.0013 19.3 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|292655899|ref|YP_003535796.1| - 0.0012 18.1 0.1 0.0022 17.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|292655899|ref|YP_003535796.1| - 0.0022 17.3 0.2 0.0022 17.3 0.2 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|292655899|ref|YP_003535796.1| - 0.0061 15.7 1.2 0.039 13.0 0.1 2.2 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|292655899|ref|YP_003535796.1| - 0.055 13.4 1.8 12 5.9 0.4 2.8 2 1 0 2 2 2 0 FAD-NAD(P)-binding FecCD PF01032.18 gi|292655900|ref|YP_003535797.1| - 4.1e-89 298.7 35.4 5.3e-89 298.3 35.4 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|292655901|ref|YP_003535798.1| - 1.3e-30 106.7 0.0 2e-30 106.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292655901|ref|YP_003535798.1| - 2.6e-11 43.9 2.0 3.1e-05 23.9 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292655901|ref|YP_003535798.1| - 2.3e-10 40.3 0.2 0.00025 20.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|292655901|ref|YP_003535798.1| - 5.7e-07 28.7 0.0 0.0089 14.9 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|292655901|ref|YP_003535798.1| - 4.5e-06 27.1 0.2 1e-05 26.0 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|292655901|ref|YP_003535798.1| - 5.3e-06 26.1 0.0 1.3e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|292655901|ref|YP_003535798.1| - 1.4e-05 25.0 0.0 6.3e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292655901|ref|YP_003535798.1| - 2.9e-05 24.4 0.9 0.00026 21.3 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|292655901|ref|YP_003535798.1| - 0.00019 21.0 0.3 0.0011 18.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|292655901|ref|YP_003535798.1| - 0.00023 21.2 0.0 0.0012 18.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|292655901|ref|YP_003535798.1| - 0.00034 21.2 0.1 0.00041 20.9 0.1 1.3 1 1 0 1 1 1 1 AAA domain HD PF01966.22 gi|292655901|ref|YP_003535798.1| - 0.00043 20.5 0.0 0.0011 19.2 0.0 1.6 1 0 0 1 1 1 1 HD domain AAA_33 PF13671.6 gi|292655901|ref|YP_003535798.1| - 0.00056 20.1 0.3 0.0014 18.8 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|292655901|ref|YP_003535798.1| - 0.00083 19.9 0.0 0.0023 18.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|292655901|ref|YP_003535798.1| - 0.00099 18.5 0.0 0.7 9.2 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|292655901|ref|YP_003535798.1| - 0.0034 17.3 0.0 0.0077 16.1 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase NACHT PF05729.12 gi|292655901|ref|YP_003535798.1| - 0.0043 17.0 0.0 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.22 gi|292655901|ref|YP_003535798.1| - 0.0046 17.3 0.0 0.0083 16.5 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|292655901|ref|YP_003535798.1| - 0.0084 16.5 0.0 0.015 15.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292655901|ref|YP_003535798.1| - 0.0089 16.0 0.0 0.02 14.9 0.0 1.7 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|292655901|ref|YP_003535798.1| - 0.0098 15.6 0.1 0.02 14.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|292655901|ref|YP_003535798.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|292655901|ref|YP_003535798.1| - 0.014 15.1 0.3 0.034 13.9 0.1 1.7 2 0 0 2 2 2 0 Cytidylate kinase APS_kinase PF01583.20 gi|292655901|ref|YP_003535798.1| - 0.016 15.1 0.1 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|292655901|ref|YP_003535798.1| - 0.017 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ATP_bind_1 PF03029.17 gi|292655901|ref|YP_003535798.1| - 0.021 14.6 0.3 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|292655901|ref|YP_003535798.1| - 0.023 14.3 0.0 0.058 13.0 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|292655901|ref|YP_003535798.1| - 0.026 14.8 0.3 0.082 13.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|292655901|ref|YP_003535798.1| - 0.026 14.6 1.4 0.25 11.4 1.4 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|292655901|ref|YP_003535798.1| - 0.028 13.7 0.0 0.059 12.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TniB PF05621.11 gi|292655901|ref|YP_003535798.1| - 0.031 13.7 0.0 3.9 6.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein cobW PF02492.19 gi|292655901|ref|YP_003535798.1| - 0.035 13.7 0.1 0.091 12.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MukB PF04310.12 gi|292655901|ref|YP_003535798.1| - 0.046 13.5 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal AAA_7 PF12775.7 gi|292655901|ref|YP_003535798.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|292655901|ref|YP_003535798.1| - 0.13 12.2 0.0 1 9.3 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|292655901|ref|YP_003535798.1| - 0.21 11.3 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FKBP_C PF00254.28 gi|292655902|ref|YP_003535799.1| - 1.5e-25 89.3 0.1 2.2e-25 88.8 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase TOBE PF03459.17 gi|292655902|ref|YP_003535799.1| - 0.14 12.4 0.9 0.34 11.3 0.2 1.9 2 0 0 2 2 2 0 TOBE domain YajC PF02699.15 gi|292655902|ref|YP_003535799.1| - 0.16 11.8 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit Fer2 PF00111.27 gi|292655903|ref|YP_003535800.1| - 3.4e-13 49.3 0.1 6.8e-13 48.4 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.31 gi|292655903|ref|YP_003535800.1| - 1.4e-08 34.7 0.0 2.2e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|292655903|ref|YP_003535800.1| - 0.0066 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 A repeated domain in UCH-protein LPG_synthase_TM PF03706.13 gi|292655904|ref|YP_003535801.1| - 5.9e-20 72.0 47.0 7.1e-20 71.7 47.0 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DHR-2 PF06920.13 gi|292655905|ref|YP_003535802.1| - 0.11 11.1 0.2 0.15 10.7 0.2 1.1 1 0 0 1 1 1 0 Dock homology region 2 HTH_5 PF01022.20 gi|292655907|ref|YP_003535804.1| - 3.8e-10 39.5 0.4 5.8e-10 38.9 0.1 1.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292655907|ref|YP_003535804.1| - 1e-06 28.7 0.1 1.9e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|292655907|ref|YP_003535804.1| - 0.00016 21.6 0.1 0.00019 21.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|292655907|ref|YP_003535804.1| - 0.00072 19.1 0.1 0.0015 18.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|292655907|ref|YP_003535804.1| - 0.049 14.0 0.0 0.057 13.8 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor TrmB PF01978.19 gi|292655907|ref|YP_003535804.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_35 PF13693.6 gi|292655907|ref|YP_003535804.1| - 0.17 12.0 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BPD_transp_1 PF00528.22 gi|292655908|ref|YP_003535805.1| - 1.2e-39 136.0 10.9 1.5e-39 135.6 10.9 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component oligo_HPY PF08352.12 gi|292655909|ref|YP_003535806.1| - 1.6e-18 67.0 0.1 2.9e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.27 gi|292655909|ref|YP_003535806.1| - 1.4e-09 38.6 0.0 2.2e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OppC_N PF12911.7 gi|292655909|ref|YP_003535806.1| - 1.4e-09 37.8 0.1 2.7e-09 36.8 0.1 1.5 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|292655910|ref|YP_003535807.1| - 1.7e-33 116.0 0.0 2.5e-33 115.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292655910|ref|YP_003535807.1| - 1.2e-14 54.5 0.0 2.2e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292655910|ref|YP_003535807.1| - 9.3e-08 32.2 0.8 4.6e-06 26.7 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292655910|ref|YP_003535807.1| - 3.3e-06 26.7 0.1 1.1e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|292655910|ref|YP_003535807.1| - 0.0031 17.1 0.1 0.016 14.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292655910|ref|YP_003535807.1| - 0.0099 16.1 0.2 0.041 14.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|292655910|ref|YP_003535807.1| - 0.023 14.9 0.1 0.86 9.9 0.1 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Glyco_hydro_65N PF03636.15 gi|292655910|ref|YP_003535807.1| - 0.029 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain AAA_5 PF07728.14 gi|292655910|ref|YP_003535807.1| - 0.036 14.1 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|292655910|ref|YP_003535807.1| - 0.042 12.5 0.1 0.12 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|292655910|ref|YP_003535807.1| - 0.048 14.0 0.1 0.091 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|292655910|ref|YP_003535807.1| - 0.12 12.2 0.2 0.21 11.4 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF917 PF06032.12 gi|292655912|ref|YP_003535809.1| - 3.7e-58 197.0 6.3 4.6e-58 196.7 6.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) DUF1177 PF06675.11 gi|292655913|ref|YP_003535810.1| - 1.6e-52 178.0 0.2 1.3e-29 102.9 0.2 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1177) AroM PF07302.11 gi|292655914|ref|YP_003535811.1| - 2.3e-72 242.9 0.0 2.6e-72 242.8 0.0 1.0 1 0 0 1 1 1 1 AroM protein Glu_dehyd_C PF16912.5 gi|292655914|ref|YP_003535811.1| - 0.013 15.0 0.2 0.023 14.2 0.2 1.5 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Peptidase_M29 PF02073.15 gi|292655915|ref|YP_003535812.1| - 9.9e-10 37.7 0.0 2.5e-08 33.1 0.1 2.5 2 1 1 3 3 3 2 Thermophilic metalloprotease (M29) Nitroreductase PF00881.24 gi|292655916|ref|YP_003535813.1| - 1.8e-19 70.4 0.8 2.6e-18 66.7 0.8 2.1 1 1 0 1 1 1 1 Nitroreductase family Asp_Glu_race PF01177.22 gi|292655917|ref|YP_003535814.1| - 9e-07 29.0 0.0 2.1e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase peroxidase PF00141.23 gi|292655918|ref|YP_003535815.1| - 9.5e-86 287.2 0.0 7.3e-47 160.0 0.0 2.2 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|292655918|ref|YP_003535815.1| - 0.061 13.3 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 STI1 domain MCPsignal PF00015.21 gi|292655919|ref|YP_003535816.1| - 1.3e-31 109.8 44.5 2e-31 109.1 24.3 3.7 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|292655919|ref|YP_003535816.1| - 4.2e-05 23.7 31.7 0.015 15.5 1.6 5.8 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 gi|292655919|ref|YP_003535816.1| - 0.00013 21.8 5.9 0.00013 21.8 5.9 4.3 1 1 2 4 4 4 1 Laminin Domain I IFT57 PF10498.9 gi|292655919|ref|YP_003535816.1| - 0.00031 19.8 18.1 0.00054 19.1 2.8 3.2 2 1 0 2 2 2 1 Intra-flagellar transport protein 57 Laminin_II PF06009.12 gi|292655919|ref|YP_003535816.1| - 0.0012 18.8 31.7 0.016 15.3 1.5 5.1 3 2 2 5 5 5 3 Laminin Domain II Bacillus_HBL PF05791.11 gi|292655919|ref|YP_003535816.1| - 0.0012 18.6 0.5 0.0012 18.6 0.5 3.9 4 1 1 5 5 4 1 Bacillus haemolytic enterotoxin (HBL) DUF1664 PF07889.12 gi|292655919|ref|YP_003535816.1| - 0.0017 18.4 25.4 0.046 13.8 1.2 5.4 3 2 3 6 6 6 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|292655919|ref|YP_003535816.1| - 0.0019 18.5 19.9 0.45 10.8 0.4 5.2 3 2 2 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|292655919|ref|YP_003535816.1| - 0.0095 14.8 26.9 0.01 14.7 2.4 3.9 2 1 2 4 4 4 2 Spc7 kinetochore protein Spectrin PF00435.21 gi|292655919|ref|YP_003535816.1| - 0.015 15.8 0.5 0.015 15.8 0.5 5.0 1 1 3 5 5 5 0 Spectrin repeat AAA_13 PF13166.6 gi|292655919|ref|YP_003535816.1| - 0.017 13.8 22.1 0.18 10.4 8.4 2.1 2 0 0 2 2 2 0 AAA domain HAMP PF00672.25 gi|292655919|ref|YP_003535816.1| - 0.023 15.1 8.4 0.11 12.9 0.1 4.0 3 0 0 3 3 3 0 HAMP domain NPV_P10 PF05531.12 gi|292655919|ref|YP_003535816.1| - 0.031 14.8 27.1 0.18 12.3 2.4 6.3 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein BORCS7 PF16088.5 gi|292655919|ref|YP_003535816.1| - 0.058 13.7 0.9 0.058 13.7 0.9 3.9 3 2 2 5 5 4 0 BLOC-1-related complex sub-unit 7 Mto2_bdg PF12808.7 gi|292655919|ref|YP_003535816.1| - 0.087 13.1 3.6 0.091 13.1 0.1 2.7 2 0 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region HIP1_clath_bdg PF16515.5 gi|292655919|ref|YP_003535816.1| - 0.1 13.3 22.3 1.6 9.4 1.0 5.3 4 1 1 6 6 6 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Trnau1ap PF17654.1 gi|292655919|ref|YP_003535816.1| - 0.11 13.3 0.1 0.3 12.0 0.1 1.7 1 0 0 1 1 1 0 Selenocysteine tRNA 1 associated proteins KxDL PF10241.9 gi|292655919|ref|YP_003535816.1| - 0.2 11.9 12.5 2.4 8.5 0.2 5.0 5 1 1 6 6 5 0 Uncharacterized conserved protein DUF713 PF05218.14 gi|292655919|ref|YP_003535816.1| - 0.22 11.3 5.0 4.4 7.0 0.2 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF713) CENP-F_leu_zip PF10473.9 gi|292655919|ref|YP_003535816.1| - 0.33 11.0 24.1 1.6 8.7 0.0 4.9 4 1 1 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|292655919|ref|YP_003535816.1| - 0.4 8.6 8.1 1.5 6.7 0.4 2.6 1 1 0 2 2 2 0 Prominin bZIP_2 PF07716.15 gi|292655919|ref|YP_003535816.1| - 0.52 10.4 5.9 0.91 9.7 3.0 2.8 2 0 0 2 2 2 0 Basic region leucine zipper DUF4131 PF13567.6 gi|292655919|ref|YP_003535816.1| - 0.84 9.3 3.8 12 5.5 3.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Fez1 PF06818.15 gi|292655919|ref|YP_003535816.1| - 1.1 9.6 19.9 9.5 6.6 3.6 3.3 2 1 0 3 3 3 0 Fez1 Mod_r PF07200.13 gi|292655919|ref|YP_003535816.1| - 1.2 9.3 20.5 0.32 11.1 0.3 4.8 2 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Fib_alpha PF08702.10 gi|292655919|ref|YP_003535816.1| - 1.3 9.2 15.2 0.18 12.0 0.6 4.4 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family Ran-binding PF05508.11 gi|292655919|ref|YP_003535816.1| - 1.4 7.8 10.6 0.19 10.7 4.8 2.3 1 1 0 2 2 2 0 RanGTP-binding protein Goodbye PF17109.5 gi|292655919|ref|YP_003535816.1| - 1.5 9.3 9.6 0.6 10.6 0.8 3.3 3 1 0 3 3 3 0 fungal STAND N-terminal Goodbye domain RNA_pol_Rpb4 PF03874.16 gi|292655919|ref|YP_003535816.1| - 1.5 9.1 4.9 8.7 6.7 0.5 3.1 3 0 0 3 3 3 0 RNA polymerase Rpb4 CREPT PF16566.5 gi|292655919|ref|YP_003535816.1| - 2.7 8.2 12.2 4.3 7.5 0.2 4.1 1 1 4 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour DASH_Duo1 PF08651.10 gi|292655919|ref|YP_003535816.1| - 4.4 7.2 12.5 11 5.9 0.5 4.9 6 0 0 6 6 5 0 DASH complex subunit Duo1 TBPIP PF07106.13 gi|292655920|ref|YP_003535817.1| - 0.0028 17.6 0.0 0.027 14.4 0.0 2.0 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain GvpK PF05121.12 gi|292655920|ref|YP_003535817.1| - 0.011 15.7 0.4 1.5 8.9 0.2 2.3 1 1 1 2 2 2 0 Gas vesicle protein K TrmB PF01978.19 gi|292655920|ref|YP_003535817.1| - 0.018 14.9 0.0 0.047 13.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RepL PF05732.11 gi|292655920|ref|YP_003535817.1| - 0.049 13.1 0.0 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF4449 PF14613.6 gi|292655920|ref|YP_003535817.1| - 0.052 13.7 0.5 0.07 13.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4449) HTH_45 PF14947.6 gi|292655920|ref|YP_003535817.1| - 0.056 13.4 0.0 0.088 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.6 gi|292655920|ref|YP_003535817.1| - 0.057 13.1 0.4 0.11 12.2 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Syntaxin-6_N PF09177.11 gi|292655920|ref|YP_003535817.1| - 0.59 10.7 4.8 3.1 8.4 0.7 2.7 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Peptidase_M20 PF01546.28 gi|292655923|ref|YP_003535820.1| - 8.1e-29 100.8 0.9 1e-28 100.5 0.9 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292655923|ref|YP_003535820.1| - 2.5e-05 24.1 0.0 5.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|292655923|ref|YP_003535820.1| - 0.035 13.8 0.6 0.16 11.6 0.2 2.0 2 0 0 2 2 2 0 Peptidase family M28 HTH_ParB PF17762.1 gi|292655924|ref|YP_003535821.1| - 0.033 14.0 0.2 0.049 13.4 0.2 1.3 1 0 0 1 1 1 0 HTH domain found in ParB protein RHH_5 PF07878.11 gi|292655924|ref|YP_003535821.1| - 0.064 13.2 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 NIR_SIR PF01077.22 gi|292655928|ref|YP_003535825.1| - 2.7e-47 160.2 0.0 3e-35 121.1 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|292655928|ref|YP_003535825.1| - 3.2e-38 129.4 0.2 7.4e-18 64.2 0.1 3.4 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain WPP PF13943.6 gi|292655929|ref|YP_003535826.1| - 0.084 13.3 0.7 4.2 7.8 0.0 2.1 2 0 0 2 2 2 0 WPP domain AbrB_C PF18277.1 gi|292655929|ref|YP_003535826.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AbrB C-terminal domain EamA PF00892.20 gi|292655930|ref|YP_003535827.1| - 1.3e-30 106.4 34.4 1.6e-15 57.5 13.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family UPF0060 PF02694.15 gi|292655930|ref|YP_003535827.1| - 0.049 13.9 7.9 0.027 14.7 4.5 2.3 1 1 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.20 gi|292655931|ref|YP_003535828.1| - 5.6e-41 139.9 33.2 2.1e-20 73.3 13.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2892 PF11127.8 gi|292655931|ref|YP_003535828.1| - 2.7 8.1 0.0 2.7 8.1 0.0 5.7 2 1 2 5 5 5 0 Protein of unknown function (DUF2892) AsnC_trans_reg PF01037.21 gi|292655932|ref|YP_003535829.1| - 7.9e-12 45.0 0.3 1.3e-11 44.2 0.3 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|292655932|ref|YP_003535829.1| - 1.7e-05 24.3 0.1 4.8e-05 22.8 0.0 1.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|292655932|ref|YP_003535829.1| - 0.00079 19.2 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|292655932|ref|YP_003535829.1| - 0.0032 17.3 0.0 0.0061 16.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|292655932|ref|YP_003535829.1| - 0.0034 17.4 0.0 0.0091 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GYD PF08734.11 gi|292655932|ref|YP_003535829.1| - 0.0084 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 GYD domain HTH_5 PF01022.20 gi|292655932|ref|YP_003535829.1| - 0.032 14.1 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PAS_3 PF08447.12 gi|292655933|ref|YP_003535830.1| - 5.5e-11 42.6 0.1 3.1e-10 40.2 0.1 2.1 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|292655933|ref|YP_003535830.1| - 1.9e-06 27.8 0.3 6.3e-06 26.1 0.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|292655933|ref|YP_003535830.1| - 8.4e-06 26.0 0.1 0.00094 19.4 0.0 3.1 3 0 0 3 3 3 1 PAS domain HATPase_c PF02518.26 gi|292655933|ref|YP_003535830.1| - 1.5e-05 25.5 0.1 3.5e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|292655933|ref|YP_003535830.1| - 2.7e-05 23.8 0.4 6.4e-05 22.6 0.4 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_4 PF08448.10 gi|292655933|ref|YP_003535830.1| - 0.00058 20.1 4.3 0.002 18.3 1.0 2.9 2 1 1 3 3 3 1 PAS fold HATPase_c_3 PF13589.6 gi|292655933|ref|YP_003535830.1| - 0.037 13.9 0.2 0.082 12.7 0.2 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|292655934|ref|YP_003535831.1| - 5.9e-07 29.4 0.1 1.1e-06 28.5 0.1 1.4 1 0 0 1 1 1 1 PAS domain SHOCT PF09851.9 gi|292655935|ref|YP_003535832.1| - 2.6e-08 33.3 3.9 4.5e-08 32.6 3.9 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|292655935|ref|YP_003535832.1| - 0.00049 20.1 4.6 0.00049 20.1 4.6 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|292655935|ref|YP_003535832.1| - 0.0006 19.8 0.3 0.00083 19.3 0.3 1.3 1 0 0 1 1 1 1 Gas vesicle protein G Beta-Casp PF10996.8 gi|292655937|ref|YP_003535834.1| - 1e-13 51.5 0.0 2e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|292655937|ref|YP_003535834.1| - 1.6e-11 44.0 1.2 2e-10 40.5 0.0 2.8 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|292655937|ref|YP_003535834.1| - 2.2e-07 30.6 1.7 4.4e-07 29.6 1.7 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292655937|ref|YP_003535834.1| - 2e-06 28.0 7.8 2e-06 28.0 7.8 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|292655937|ref|YP_003535834.1| - 0.00067 19.1 0.0 0.0016 17.9 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292655937|ref|YP_003535834.1| - 0.037 13.9 0.4 0.16 11.9 0.3 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|292655937|ref|YP_003535834.1| - 0.091 13.3 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain Flexi_CP_N PF08358.10 gi|292655937|ref|YP_003535834.1| - 0.15 12.1 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 Carlavirus coat DUF3348 PF11828.8 gi|292655938|ref|YP_003535835.1| - 0.049 13.3 2.0 0.084 12.5 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3348) TPR_4 PF07721.14 gi|292655938|ref|YP_003535835.1| - 1.1 10.1 8.9 1.5 9.7 2.6 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat DAO PF01266.24 gi|292655939|ref|YP_003535836.1| - 3.1e-10 40.2 0.3 3.6e-05 23.5 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|292655939|ref|YP_003535836.1| - 2.7e-08 33.5 0.0 5.2e-07 29.2 0.0 2.4 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|292655939|ref|YP_003535836.1| - 1.5e-07 30.7 0.0 0.00055 18.9 0.0 2.7 2 1 1 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|292655939|ref|YP_003535836.1| - 1.5e-07 30.8 0.0 3.9e-05 22.9 0.0 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|292655939|ref|YP_003535836.1| - 3.2e-07 30.1 0.5 9.8e-07 28.5 0.5 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292655939|ref|YP_003535836.1| - 2.4e-06 27.0 0.2 0.00012 21.4 0.1 2.4 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292655939|ref|YP_003535836.1| - 3.2e-05 23.2 0.1 0.00024 20.3 0.1 1.9 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|292655939|ref|YP_003535836.1| - 6e-05 22.3 0.0 0.00061 19.0 0.0 2.2 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|292655939|ref|YP_003535836.1| - 9.3e-05 21.3 0.0 0.0099 14.6 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|292655939|ref|YP_003535836.1| - 0.00025 20.4 0.1 0.0016 17.7 0.0 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|292655939|ref|YP_003535836.1| - 0.02 15.1 0.2 0.074 13.3 0.2 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain GMC_oxred_N PF00732.19 gi|292655939|ref|YP_003535836.1| - 0.03 13.7 0.0 1.8 7.9 0.0 2.3 2 0 0 2 2 2 0 GMC oxidoreductase Pyr_redox_3 PF13738.6 gi|292655939|ref|YP_003535836.1| - 0.11 11.8 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M10 PF00413.24 gi|292655942|ref|YP_003535839.1| - 1.5e-06 28.2 0.0 8.7e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 Matrixin Reprolysin_3 PF13582.6 gi|292655942|ref|YP_003535839.1| - 2.7e-05 24.7 0.0 5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|292655942|ref|YP_003535839.1| - 0.00024 20.8 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|292655942|ref|YP_003535839.1| - 0.00052 20.2 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|292655942|ref|YP_003535839.1| - 0.011 14.7 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Astacin PF01400.24 gi|292655942|ref|YP_003535839.1| - 0.013 15.2 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) DUF4953 PF16313.5 gi|292655942|ref|YP_003535839.1| - 0.018 14.3 0.4 0.029 13.6 0.4 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_2 PF13574.6 gi|292655942|ref|YP_003535839.1| - 0.027 14.3 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.8 gi|292655942|ref|YP_003535839.1| - 0.028 14.0 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Peptidase_M54 PF07998.11 gi|292655942|ref|YP_003535839.1| - 0.05 13.6 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 AMMECR1 PF01871.17 gi|292655943|ref|YP_003535840.1| - 1.1e-41 142.2 0.0 1.3e-41 142.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.19 gi|292655944|ref|YP_003535841.1| - 1.5e-16 60.6 0.0 2.1e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|292655944|ref|YP_003535841.1| - 0.003 17.6 0.0 0.012 15.6 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|292655944|ref|YP_003535841.1| - 0.051 14.0 0.0 0.59 10.5 0.0 2.1 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Adipogenin PF15202.6 gi|292655945|ref|YP_003535842.1| - 0.019 15.0 0.3 0.069 13.2 0.0 1.9 2 0 0 2 2 2 0 Adipogenin Peptidase_M78 PF06114.13 gi|292655946|ref|YP_003535843.1| - 0.01 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain DUF4157 PF13699.6 gi|292655946|ref|YP_003535843.1| - 0.014 15.6 0.1 0.059 13.6 0.1 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.9 gi|292655946|ref|YP_003535843.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_M76 PF09768.9 gi|292655948|ref|YP_003535845.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family Isochorismatase PF00857.20 gi|292655949|ref|YP_003535846.1| - 3.2e-45 154.4 0.0 3.6e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family 4HBT PF03061.22 gi|292655950|ref|YP_003535847.1| - 1.5e-13 50.9 0.1 2.6e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|292655950|ref|YP_003535847.1| - 2.8e-08 34.0 0.0 3.3e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) D-ser_dehydrat PF14031.6 gi|292655950|ref|YP_003535847.1| - 0.061 14.0 0.1 0.16 12.6 0.0 1.7 2 1 0 2 2 2 0 Putative serine dehydratase domain PAS PF00989.25 gi|292655951|ref|YP_003535848.1| - 4.7e-31 107.1 0.1 1.4e-11 44.4 0.1 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|292655951|ref|YP_003535848.1| - 2.9e-29 101.5 15.3 1.6e-12 47.6 0.1 4.3 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|292655951|ref|YP_003535848.1| - 8.2e-25 86.9 0.0 1.8e-13 50.5 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|292655951|ref|YP_003535848.1| - 1.9e-24 85.9 0.0 1e-07 32.1 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|292655951|ref|YP_003535848.1| - 1.2e-20 74.1 0.0 2.6e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|292655951|ref|YP_003535848.1| - 2.4e-12 46.6 0.2 5.6e-06 26.2 0.0 4.1 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|292655951|ref|YP_003535848.1| - 5.6e-11 42.3 1.8 1.9e-10 40.6 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|292655951|ref|YP_003535848.1| - 3.1e-09 37.4 0.0 0.093 13.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|292655951|ref|YP_003535848.1| - 4.1e-09 36.8 5.6 2.2e-08 34.5 0.5 3.6 3 1 0 3 3 3 1 GAF domain PAS_7 PF12860.7 gi|292655951|ref|YP_003535848.1| - 7.8e-06 26.0 1.1 0.018 15.2 0.0 4.0 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|292655951|ref|YP_003535848.1| - 3.2e-05 23.9 0.4 0.00078 19.4 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|292655951|ref|YP_003535848.1| - 0.00018 21.6 0.0 0.026 14.6 0.0 2.4 2 0 0 2 2 2 1 PAS domain DUF3391 PF11871.8 gi|292655951|ref|YP_003535848.1| - 0.067 13.7 1.2 0.14 12.7 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) PAS_2 PF08446.11 gi|292655951|ref|YP_003535848.1| - 0.19 12.4 0.0 0.84 10.3 0.0 2.1 2 0 0 2 2 2 0 PAS fold PfkB PF00294.24 gi|292655952|ref|YP_003535849.1| - 0.0017 17.7 0.6 0.013 14.8 0.6 2.0 2 0 0 2 2 2 1 pfkB family carbohydrate kinase BAT PF15915.5 gi|292655953|ref|YP_003535850.1| - 2.5e-07 30.7 0.1 2.8e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|292655953|ref|YP_003535850.1| - 0.00026 20.7 0.0 0.00039 20.1 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|292655953|ref|YP_003535850.1| - 0.0034 16.8 0.3 0.0057 16.1 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|292655953|ref|YP_003535850.1| - 0.012 15.3 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|292655953|ref|YP_003535850.1| - 0.069 12.7 0.5 0.36 10.4 0.5 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Peptidase_M23 PF01551.22 gi|292655954|ref|YP_003535851.1| - 0.064 13.5 0.0 0.25 11.6 0.0 2.1 1 1 0 1 1 1 0 Peptidase family M23 BPL_LplA_LipB PF03099.19 gi|292655955|ref|YP_003535852.1| - 0.052 13.5 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Amidohydro_1 PF01979.20 gi|292655956|ref|YP_003535853.1| - 1.6e-21 77.0 0.0 7.5e-21 74.8 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|292655956|ref|YP_003535853.1| - 9.6e-14 51.7 6.4 0.00016 21.3 0.1 3.1 3 0 0 3 3 3 3 Amidohydrolase family DHOase PF12890.7 gi|292655956|ref|YP_003535853.1| - 0.013 15.4 0.0 0.04 13.9 0.0 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like TatD_DNase PF01026.21 gi|292655956|ref|YP_003535853.1| - 0.086 12.2 0.0 10 5.4 0.0 2.2 2 0 0 2 2 2 0 TatD related DNase DUF3098 PF11297.8 gi|292655957|ref|YP_003535854.1| - 2.9 7.5 6.0 6.8 6.4 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3098) Usp PF00582.26 gi|292655960|ref|YP_003535857.1| - 1.3e-14 54.9 0.1 1.2e-12 48.6 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|292655960|ref|YP_003535857.1| - 0.0059 16.2 0.0 0.0093 15.6 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DUF5351 PF17302.2 gi|292655960|ref|YP_003535857.1| - 0.35 11.1 1.0 0.5 10.6 0.1 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5351) Acetyltransf_1 PF00583.25 gi|292655961|ref|YP_003535858.1| - 3.6e-18 65.9 0.0 4.5e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292655961|ref|YP_003535858.1| - 1.2e-13 51.1 0.0 1.6e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292655961|ref|YP_003535858.1| - 7.3e-11 42.3 0.0 1.1e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|292655961|ref|YP_003535858.1| - 2e-06 28.5 0.0 2.6e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292655961|ref|YP_003535858.1| - 6.5e-06 26.3 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292655961|ref|YP_003535858.1| - 8.1e-05 22.5 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|292655961|ref|YP_003535858.1| - 0.018 15.2 0.2 0.026 14.7 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|292655961|ref|YP_003535858.1| - 0.02 15.0 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_16 PF05301.11 gi|292655961|ref|YP_003535858.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Acetyltransf_CG PF14542.6 gi|292655961|ref|YP_003535858.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|292655961|ref|YP_003535858.1| - 0.17 11.9 0.1 0.49 10.4 0.0 1.7 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Usp PF00582.26 gi|292655962|ref|YP_003535859.1| - 3.9e-13 50.1 9.2 1.1e-12 48.7 9.2 1.7 1 1 0 1 1 1 1 Universal stress protein family COE1_HLH PF16423.5 gi|292655962|ref|YP_003535859.1| - 0.13 12.0 0.6 2.8 7.7 0.0 2.6 3 0 0 3 3 3 0 Transcription factor COE1 helix-loop-helix domain Usp PF00582.26 gi|292655963|ref|YP_003535860.1| - 3.8e-34 118.2 5.5 4.4e-34 118.0 5.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|292655963|ref|YP_003535860.1| - 0.011 15.8 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 DNA photolyase Sipho_Gp37 PF14594.6 gi|292655963|ref|YP_003535860.1| - 0.036 13.1 1.2 0.046 12.7 1.2 1.1 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein PGA_cap PF09587.10 gi|292655964|ref|YP_003535861.1| - 0.047 13.1 0.1 0.63 9.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap DUF1840 PF08895.11 gi|292655964|ref|YP_003535861.1| - 1.7 9.0 7.6 3.7 7.9 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) Ribosomal_S6e PF01092.19 gi|292655967|ref|YP_003535864.1| - 8.4e-38 129.2 0.0 1e-37 128.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e VbhA PF18495.1 gi|292655967|ref|YP_003535864.1| - 1.9 8.4 5.5 0.77 9.7 0.2 2.5 3 0 0 3 3 3 0 Antitoxin VbhA DZR PF12773.7 gi|292655968|ref|YP_003535865.1| - 0.00093 19.2 0.7 0.0013 18.7 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|292655968|ref|YP_003535865.1| - 0.0032 17.5 0.4 0.0035 17.3 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|292655968|ref|YP_003535865.1| - 0.0054 16.6 2.6 0.009 15.9 2.6 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|292655968|ref|YP_003535865.1| - 0.01 15.9 4.5 0.025 14.7 4.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf_Rg PF17915.1 gi|292655968|ref|YP_003535865.1| - 0.012 15.0 0.6 0.087 12.2 0.1 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger DnaJ_CXXCXGXG PF00684.19 gi|292655968|ref|YP_003535865.1| - 0.012 15.9 0.4 0.018 15.4 0.4 1.3 1 0 0 1 1 1 0 DnaJ central domain TF_Zn_Ribbon PF08271.12 gi|292655968|ref|YP_003535865.1| - 0.012 15.1 3.1 0.25 10.9 0.4 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|292655968|ref|YP_003535865.1| - 0.015 15.7 3.0 0.19 12.2 0.4 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 RNA_POL_M_15KD PF02150.16 gi|292655968|ref|YP_003535865.1| - 0.026 14.4 1.1 0.62 10.0 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1272 PF06906.11 gi|292655968|ref|YP_003535865.1| - 0.03 14.4 3.5 0.11 12.6 3.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-H2C2_2 PF13465.6 gi|292655968|ref|YP_003535865.1| - 0.032 14.7 1.4 0.3 11.6 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_Topoisom PF01396.19 gi|292655968|ref|YP_003535865.1| - 0.043 13.6 3.3 0.94 9.3 0.2 2.7 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|292655968|ref|YP_003535865.1| - 0.16 12.1 6.2 3.5 7.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|292655968|ref|YP_003535865.1| - 0.2 11.1 5.9 2 7.9 5.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|292655968|ref|YP_003535865.1| - 0.23 11.4 4.6 7.8 6.5 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|292655968|ref|YP_003535865.1| - 0.24 11.1 4.1 0.75 9.6 4.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|292655968|ref|YP_003535865.1| - 0.37 11.1 3.7 2.5 8.5 0.4 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.7 gi|292655968|ref|YP_003535865.1| - 0.38 10.7 6.6 4.3 7.4 0.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|292655968|ref|YP_003535865.1| - 0.45 9.2 1.4 0.56 8.9 1.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prim_Zn_Ribbon PF08273.12 gi|292655968|ref|YP_003535865.1| - 0.78 10.1 5.0 9.2 6.6 0.4 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-ISL3 PF14690.6 gi|292655968|ref|YP_003535865.1| - 1.8 9.3 6.8 5.6 7.7 0.6 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.6 gi|292655968|ref|YP_003535865.1| - 3.4 7.1 6.7 42 3.6 6.7 2.3 1 1 0 1 1 1 0 Transcription factor zinc-finger Peptidase_M29 PF02073.15 gi|292655969|ref|YP_003535866.1| - 3.4e-64 217.1 0.2 4e-64 216.9 0.2 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|292655969|ref|YP_003535866.1| - 0.066 13.7 1.4 0.27 11.7 0.4 2.5 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NAD_binding_2 PF03446.15 gi|292655970|ref|YP_003535867.1| - 6.3e-38 130.4 0.1 9.4e-38 129.9 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|292655970|ref|YP_003535867.1| - 5.8e-24 85.0 0.0 8.2e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|292655970|ref|YP_003535867.1| - 6.9e-05 23.4 0.0 0.00011 22.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|292655970|ref|YP_003535867.1| - 0.00022 21.1 0.1 0.00036 20.5 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|292655970|ref|YP_003535867.1| - 0.00063 19.2 0.0 0.00088 18.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 gi|292655970|ref|YP_003535867.1| - 0.00087 19.5 0.5 0.0091 16.2 0.0 2.5 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.18 gi|292655970|ref|YP_003535867.1| - 0.0018 18.5 0.1 0.0034 17.6 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|292655970|ref|YP_003535867.1| - 0.0097 15.8 2.0 0.71 9.7 0.4 2.8 2 1 0 3 3 3 1 NAD(P)H-binding DapB_N PF01113.20 gi|292655970|ref|YP_003535867.1| - 0.099 12.8 1.7 0.25 11.5 1.7 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.14 gi|292655970|ref|YP_003535867.1| - 0.14 11.8 0.0 0.33 10.5 0.2 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Gp_dh_N PF00044.24 gi|292655970|ref|YP_003535867.1| - 0.15 12.5 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Fer2 PF00111.27 gi|292655971|ref|YP_003535868.1| - 2.9e-12 46.4 0.4 2.9e-12 46.4 0.4 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|292655971|ref|YP_003535868.1| - 0.092 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain MatE PF01554.18 gi|292655972|ref|YP_003535869.1| - 1.8e-62 209.7 38.9 2.4e-34 118.3 16.1 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|292655972|ref|YP_003535869.1| - 8.1e-07 29.2 9.1 8.1e-07 29.2 9.1 4.8 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DDE_Tnp_1 PF01609.21 gi|292655973|ref|YP_003535870.1| - 1.6e-26 93.3 0.0 2.2e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292655973|ref|YP_003535870.1| - 0.0071 15.6 0.1 0.016 14.4 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 Resolvase PF00239.21 gi|292655974|ref|YP_003535871.1| - 8.3e-35 120.0 0.3 9.3e-35 119.9 0.3 1.0 1 0 0 1 1 1 1 Resolvase, N terminal domain Pox_F16 PF04708.12 gi|292655974|ref|YP_003535871.1| - 0.00072 19.1 0.0 0.00077 19.0 0.0 1.1 1 0 0 1 1 1 1 Poxvirus F16 protein FtsH_ext PF06480.15 gi|292655974|ref|YP_003535871.1| - 0.17 12.3 0.0 0.3 11.5 0.0 1.4 1 1 0 1 1 1 0 FtsH Extracellular Phage_integrase PF00589.22 gi|292655975|ref|YP_003535872.1| - 3.1e-11 43.4 0.0 1.7e-10 41.0 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|292655975|ref|YP_003535872.1| - 1.5e-06 28.4 0.1 3.7e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|292655975|ref|YP_003535872.1| - 0.002 18.5 0.8 0.0036 17.6 0.1 1.8 2 0 0 2 2 2 1 Phage integrase SAM-like domain CLIP_SPH_mas PF18398.1 gi|292655975|ref|YP_003535872.1| - 0.03 14.7 1.7 1.5 9.3 0.2 2.4 2 0 0 2 2 2 0 Clip-domain serine protease homolog masquerade Phage_int_SAM_4 PF13495.6 gi|292655975|ref|YP_003535872.1| - 0.082 13.4 0.1 0.49 10.9 0.1 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain DUF3268 PF11672.8 gi|292655976|ref|YP_003535873.1| - 0.0019 18.5 0.2 0.0022 18.3 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain DZR PF12773.7 gi|292655976|ref|YP_003535873.1| - 0.037 14.1 1.4 0.096 12.7 1.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|292655976|ref|YP_003535873.1| - 0.22 11.6 2.6 3.3 7.9 0.1 2.1 1 1 0 2 2 2 0 Zinc ribbon domain HTH_IclR PF09339.10 gi|292655977|ref|YP_003535874.1| - 0.00056 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292655977|ref|YP_003535874.1| - 0.014 15.3 0.3 0.043 13.7 0.0 2.0 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|292655977|ref|YP_003535874.1| - 0.021 14.7 0.0 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LZ_Tnp_IS481 PF13011.6 gi|292655977|ref|YP_003535874.1| - 0.14 12.7 0.1 0.68 10.5 0.1 2.2 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 Peptidase_M3 PF01432.20 gi|292655982|ref|YP_003535879.1| - 7.2e-71 239.8 1.8 7.2e-71 239.8 1.8 1.9 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|292655982|ref|YP_003535879.1| - 9.2e-22 77.1 0.5 9.2e-22 77.1 0.5 2.9 3 0 0 3 3 3 1 Oligopeptidase F P2 PF07194.11 gi|292655982|ref|YP_003535879.1| - 0.15 12.1 0.1 1.6 8.9 0.0 2.5 2 0 0 2 2 2 0 P2 response regulator binding domain zf-ribbon_3 PF13248.6 gi|292655983|ref|YP_003535880.1| - 0.032 13.6 0.8 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|292655983|ref|YP_003535880.1| - 0.14 12.3 3.3 0.35 11.0 3.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|292655983|ref|YP_003535880.1| - 0.28 11.2 3.0 5.7 7.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Peptidase_M28 PF04389.17 gi|292655984|ref|YP_003535881.1| - 4.6e-31 108.1 0.1 6.7e-31 107.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|292655984|ref|YP_003535881.1| - 1.3e-10 41.2 1.5 2.9e-10 40.0 0.6 2.1 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.14 gi|292655984|ref|YP_003535881.1| - 8.6e-05 21.7 0.2 0.00013 21.1 0.2 1.2 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|292655984|ref|YP_003535881.1| - 0.0035 17.1 1.1 0.0075 16.0 1.1 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 DUF2892 PF11127.8 gi|292655985|ref|YP_003535882.1| - 0.27 11.3 12.7 96 3.1 12.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) HAD_2 PF13419.6 gi|292655986|ref|YP_003535883.1| - 3.7e-18 66.2 0.0 4.7e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292655986|ref|YP_003535883.1| - 4.3e-09 37.0 1.3 5.2e-08 33.4 1.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292655986|ref|YP_003535883.1| - 3.2e-08 33.5 0.4 9e-08 32.1 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|292655986|ref|YP_003535883.1| - 0.0002 21.8 0.3 0.0003 21.3 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PseudoU_synth_1 PF01416.20 gi|292655987|ref|YP_003535884.1| - 2.4e-11 44.1 0.0 2.9e-07 30.9 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Usp PF00582.26 gi|292655988|ref|YP_003535885.1| - 4.8e-39 134.1 4.8 5.4e-39 133.9 4.8 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|292655988|ref|YP_003535885.1| - 0.035 14.1 0.6 0.096 12.7 0.6 1.7 1 1 0 1 1 1 0 DNA photolyase tRNA-synt_His PF13393.6 gi|292655989|ref|YP_003535886.1| - 6.1e-48 163.7 0.1 8e-48 163.3 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|292655989|ref|YP_003535886.1| - 1.4e-14 54.0 0.0 3e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|292655989|ref|YP_003535886.1| - 3.7e-08 33.6 0.0 1.5e-07 31.6 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|292655989|ref|YP_003535886.1| - 0.09 12.2 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) EamA PF00892.20 gi|292655990|ref|YP_003535887.1| - 2.2e-22 79.7 26.4 2.1e-12 47.4 13.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|292655990|ref|YP_003535887.1| - 0.019 15.0 0.5 0.019 15.0 0.5 3.0 3 0 0 3 3 3 0 Putative transmembrane family 234 TPT PF03151.16 gi|292655990|ref|YP_003535887.1| - 0.49 9.7 12.6 0.18 11.1 1.1 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family PAPS_reduct PF01507.19 gi|292655991|ref|YP_003535888.1| - 0.0081 16.2 0.0 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|292655991|ref|YP_003535888.1| - 0.0089 15.7 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|292655991|ref|YP_003535888.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|292655991|ref|YP_003535888.1| - 0.2 10.4 0.0 0.35 9.6 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.20 gi|292655992|ref|YP_003535889.1| - 2.9e-28 98.3 17.6 3.3e-28 98.2 17.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain MSC PF09402.10 gi|292655992|ref|YP_003535889.1| - 0.0028 17.2 3.4 0.0032 17.0 3.4 1.0 1 0 0 1 1 1 1 Man1-Src1p-C-terminal domain PCI PF01399.27 gi|292655992|ref|YP_003535889.1| - 0.028 14.9 0.3 0.075 13.5 0.1 1.8 1 1 1 2 2 2 0 PCI domain Arg_decarbox_C PF17944.1 gi|292655992|ref|YP_003535889.1| - 0.64 10.6 0.1 0.64 10.6 0.1 2.7 2 1 1 3 3 3 0 Arginine decarboxylase C-terminal helical extension Ribosomal_S19e PF01090.19 gi|292655993|ref|YP_003535890.1| - 3.9e-45 152.9 0.0 4.4e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|292655993|ref|YP_003535890.1| - 0.0036 16.9 0.3 0.064 12.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|292655993|ref|YP_003535890.1| - 0.016 15.1 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|292655993|ref|YP_003535890.1| - 0.026 14.9 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|292655993|ref|YP_003535890.1| - 0.083 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|292655993|ref|YP_003535890.1| - 0.19 12.1 0.1 0.96 9.8 0.1 2.0 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) LPG_synthase_TM PF03706.13 gi|292655994|ref|YP_003535891.1| - 1e-35 123.8 37.8 1.2e-35 123.6 37.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region AIRS PF00586.24 gi|292655996|ref|YP_003535893.1| - 2.5e-16 60.1 4.2 5.4e-16 59.0 4.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|292655996|ref|YP_003535893.1| - 2.7e-09 37.3 0.5 4.5e-09 36.6 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.22 gi|292655997|ref|YP_003535894.1| - 5e-16 58.7 7.4 7.8e-08 31.9 2.5 2.3 1 1 1 2 2 2 2 Peptidase family M50 MoaE PF02391.17 gi|292655999|ref|YP_003535896.1| - 1.2e-24 86.7 0.4 1.8e-24 86.2 0.4 1.3 1 0 0 1 1 1 1 MoaE protein AAA_18 PF13238.6 gi|292655999|ref|YP_003535896.1| - 0.052 14.1 0.0 1.3 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain TauE PF01925.19 gi|292656000|ref|YP_003535897.1| - 0.0031 17.2 0.3 0.0038 16.9 0.3 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Phage_holin_3_2 PF04550.12 gi|292656000|ref|YP_003535897.1| - 0.0091 16.5 0.2 0.018 15.5 0.2 1.6 1 1 0 1 1 1 1 Phage holin family 2 DUF2339 PF10101.9 gi|292656000|ref|YP_003535897.1| - 0.02 13.5 4.4 0.024 13.2 4.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) DUF4131 PF13567.6 gi|292656000|ref|YP_003535897.1| - 1.7 8.2 5.8 1.1 8.8 0.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) AA_kinase PF00696.28 gi|292656001|ref|YP_003535898.1| - 4.1e-25 88.8 7.3 1.1e-24 87.3 7.3 1.6 1 1 0 1 1 1 1 Amino acid kinase family tRNA-synt_1f PF01921.18 gi|292656002|ref|YP_003535899.1| - 3.1e-103 345.5 0.0 4.6e-103 344.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|292656002|ref|YP_003535899.1| - 2.8e-08 32.9 0.0 1.1e-06 27.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|292656002|ref|YP_003535899.1| - 2.7e-05 23.7 0.0 0.0074 15.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Thioesterase PF00975.20 gi|292656002|ref|YP_003535899.1| - 0.071 13.2 0.0 1.5 8.8 0.0 2.6 3 0 0 3 3 3 0 Thioesterase domain DUF1616 PF07760.11 gi|292656004|ref|YP_003535901.1| - 0.0048 16.3 0.0 0.0053 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2946 PF11162.8 gi|292656004|ref|YP_003535901.1| - 0.044 14.5 3.2 0.2 12.3 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) SAPS PF04499.15 gi|292656004|ref|YP_003535901.1| - 1.5 7.5 4.1 1.8 7.3 4.1 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Peptidase_M50 PF02163.22 gi|292656005|ref|YP_003535902.1| - 1.7e-21 76.7 0.0 3.7e-21 75.6 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|292656005|ref|YP_003535902.1| - 6.7e-21 74.4 1.4 2.9e-08 33.9 0.0 3.3 2 1 1 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|292656005|ref|YP_003535902.1| - 1.3e-11 44.2 0.4 3.5e-07 29.9 0.3 3.6 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 gi|292656005|ref|YP_003535902.1| - 6.8e-08 32.8 1.0 4.7e-06 26.9 0.0 3.3 4 1 0 4 4 4 1 PDZ domain Tricorn_PDZ PF14685.6 gi|292656005|ref|YP_003535902.1| - 7.1e-05 22.7 1.4 0.0024 17.8 0.2 3.2 3 0 0 3 3 3 1 Tricorn protease PDZ domain DUF1761 PF08570.10 gi|292656005|ref|YP_003535902.1| - 0.026 14.8 0.0 0.29 11.4 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1761) Chlor_dismutase PF06778.12 gi|292656006|ref|YP_003535903.1| - 1.2e-68 230.5 0.1 2.1e-68 229.7 0.1 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|292656006|ref|YP_003535903.1| - 3.3e-11 43.1 7.5 1e-09 38.4 0.1 3.7 4 0 0 4 4 4 2 Antibiotic biosynthesis monooxygenase Bac_transf PF02397.16 gi|292656007|ref|YP_003535904.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial sugar transferase Aldo_ket_red PF00248.21 gi|292656009|ref|YP_003535906.1| - 2.7e-49 167.9 0.0 3.2e-49 167.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family JIP_LZII PF16471.5 gi|292656009|ref|YP_003535906.1| - 0.27 11.4 1.8 0.83 9.9 1.4 2.0 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Hexapep PF00132.24 gi|292656010|ref|YP_003535907.1| - 7.9e-08 31.7 5.5 0.00024 20.7 0.8 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|292656010|ref|YP_003535907.1| - 0.0017 18.1 5.8 0.027 14.2 1.1 3.0 2 2 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DZR PF12773.7 gi|292656011|ref|YP_003535908.1| - 0.00054 19.9 0.5 0.00071 19.6 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|292656011|ref|YP_003535908.1| - 0.0014 18.3 3.5 0.0034 17.0 3.5 1.7 1 1 0 1 1 1 1 zinc-ribbon domain DUF2614 PF11023.8 gi|292656011|ref|YP_003535908.1| - 0.12 12.5 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ribbon_3 PF13248.6 gi|292656011|ref|YP_003535908.1| - 0.12 11.8 5.6 0.85 9.1 5.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292656011|ref|YP_003535908.1| - 0.2 11.2 0.5 0.2 11.2 0.5 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding NAD_synthase PF02540.17 gi|292656012|ref|YP_003535909.1| - 6.8e-80 267.7 0.0 7.9e-80 267.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|292656012|ref|YP_003535909.1| - 2.1e-05 23.5 0.1 0.0043 15.9 0.0 2.2 1 1 1 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|292656012|ref|YP_003535909.1| - 0.0013 18.5 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|292656012|ref|YP_003535909.1| - 0.016 14.7 0.0 0.065 12.7 0.0 1.9 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC ECH_1 PF00378.20 gi|292656013|ref|YP_003535910.1| - 4e-34 118.1 0.0 5e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|292656013|ref|YP_003535910.1| - 4.9e-22 78.9 0.0 5.4e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Pectinesterase PF01095.19 gi|292656015|ref|YP_003535912.1| - 2.3e-72 243.3 0.0 2.7e-72 243.0 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase YdjM PF04307.14 gi|292656016|ref|YP_003535913.1| - 0.00013 21.3 19.7 0.00024 20.5 13.7 2.9 2 1 0 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase DUF2238 PF09997.9 gi|292656017|ref|YP_003535914.1| - 2.2e-05 24.3 2.5 0.00058 19.7 1.5 2.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Ferric_reduct PF01794.19 gi|292656017|ref|YP_003535914.1| - 0.12 12.5 5.3 0.23 11.6 5.3 1.6 1 1 0 1 1 1 0 Ferric reductase like transmembrane component TrkA_N PF02254.18 gi|292656018|ref|YP_003535915.1| - 4.3e-26 91.5 0.1 5.8e-26 91.0 0.1 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|292656018|ref|YP_003535915.1| - 1.2e-10 41.1 0.1 2.5e-10 40.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|292656018|ref|YP_003535915.1| - 7.2e-07 29.0 0.1 1.1e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|292656018|ref|YP_003535915.1| - 7.7e-06 26.3 0.0 1.1e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|292656018|ref|YP_003535915.1| - 3.5e-05 23.5 0.1 6e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|292656018|ref|YP_003535915.1| - 5.1e-05 22.9 0.1 8.7e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|292656018|ref|YP_003535915.1| - 0.00013 22.5 0.4 0.0003 21.3 0.4 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|292656018|ref|YP_003535915.1| - 0.00015 21.2 0.1 0.00047 19.6 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|292656018|ref|YP_003535915.1| - 0.00023 21.1 0.1 0.00036 20.5 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|292656018|ref|YP_003535915.1| - 0.00024 21.3 0.1 0.00089 19.5 0.0 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|292656018|ref|YP_003535915.1| - 0.00042 20.6 0.1 0.00063 20.0 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|292656018|ref|YP_003535915.1| - 0.00045 19.6 0.0 0.00052 19.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Epimerase PF01370.21 gi|292656018|ref|YP_003535915.1| - 0.007 15.9 0.1 0.0096 15.4 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family XdhC_C PF13478.6 gi|292656018|ref|YP_003535915.1| - 0.011 16.2 0.0 0.015 15.8 0.0 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain PrpR_N PF06506.11 gi|292656018|ref|YP_003535915.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator DAO PF01266.24 gi|292656018|ref|YP_003535915.1| - 0.019 14.6 0.0 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292656018|ref|YP_003535915.1| - 0.023 13.9 0.1 0.028 13.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|292656018|ref|YP_003535915.1| - 0.039 14.2 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AdoHcyase_NAD PF00670.21 gi|292656018|ref|YP_003535915.1| - 0.055 13.5 0.1 0.083 13.0 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|292656018|ref|YP_003535915.1| - 0.061 13.9 0.0 0.097 13.3 0.0 1.3 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|292656018|ref|YP_003535915.1| - 0.1 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABC_tran PF00005.27 gi|292656019|ref|YP_003535916.1| - 4.9e-32 111.3 0.0 6.8e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656019|ref|YP_003535916.1| - 4.4e-11 43.1 0.0 3.2e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|292656019|ref|YP_003535916.1| - 0.00011 22.6 1.5 0.0018 18.7 1.6 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292656019|ref|YP_003535916.1| - 0.00034 20.9 0.0 0.0006 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|292656019|ref|YP_003535916.1| - 0.0019 17.9 2.1 0.035 13.8 2.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292656019|ref|YP_003535916.1| - 0.0059 16.8 0.2 0.018 15.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|292656019|ref|YP_003535916.1| - 0.016 15.6 0.0 0.16 12.4 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|292656019|ref|YP_003535916.1| - 0.02 15.2 0.0 0.057 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|292656019|ref|YP_003535916.1| - 0.03 14.6 0.2 0.4 10.9 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|292656019|ref|YP_003535916.1| - 0.03 13.8 0.0 0.34 10.3 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|292656019|ref|YP_003535916.1| - 0.037 13.9 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|292656019|ref|YP_003535916.1| - 0.042 14.4 0.0 0.24 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|292656019|ref|YP_003535916.1| - 0.062 12.9 0.3 0.49 9.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|292656019|ref|YP_003535916.1| - 0.064 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|292656019|ref|YP_003535916.1| - 0.09 12.0 0.3 0.35 10.0 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain Rad17 PF03215.15 gi|292656019|ref|YP_003535916.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|292656019|ref|YP_003535916.1| - 0.13 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|292656019|ref|YP_003535916.1| - 0.22 11.4 0.0 0.91 9.4 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|292656019|ref|YP_003535916.1| - 0.25 11.8 0.0 0.41 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|292656020|ref|YP_003535917.1| - 7.3e-11 42.1 12.6 7.3e-11 42.1 12.6 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|292656021|ref|YP_003535918.1| - 3.4e-31 109.0 2.2 5.2e-31 108.4 2.2 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|292656021|ref|YP_003535918.1| - 7.5e-10 38.9 0.2 1.3e-09 38.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|292656021|ref|YP_003535918.1| - 0.00019 20.6 0.1 0.0003 20.0 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|292656021|ref|YP_003535918.1| - 0.0052 16.6 1.2 0.024 14.5 0.5 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence LysR_substrate PF03466.20 gi|292656021|ref|YP_003535918.1| - 0.03 13.7 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain PIN_3 PF13470.6 gi|292656022|ref|YP_003535919.1| - 0.0005 20.8 1.4 0.0031 18.2 1.4 1.9 1 1 0 1 1 1 1 PIN domain DUF4956 PF16316.5 gi|292656023|ref|YP_003535920.1| - 0.11 12.1 3.9 0.12 12.0 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) Eno-Rase_NADH_b PF12242.8 gi|292656023|ref|YP_003535920.1| - 0.24 11.2 6.1 0.21 11.3 5.0 1.5 1 1 1 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF4407 PF14362.6 gi|292656023|ref|YP_003535920.1| - 0.86 8.9 6.8 0.95 8.8 6.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ACT_7 PF13840.6 gi|292656025|ref|YP_003535922.1| - 5.3e-17 61.4 0.0 8.3e-17 60.7 0.0 1.3 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|292656025|ref|YP_003535922.1| - 0.00078 19.2 1.8 0.0015 18.2 0.1 2.2 2 1 0 2 2 2 1 ACT domain Ham1p_like PF01725.16 gi|292656026|ref|YP_003535923.1| - 2.7e-48 164.4 0.0 3.3e-48 164.1 0.0 1.1 1 0 0 1 1 1 1 Ham1 family Peptidase_M22 PF00814.25 gi|292656028|ref|YP_003535925.1| - 2.2e-73 247.3 0.0 3.3e-73 246.7 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|292656028|ref|YP_003535925.1| - 3.2e-05 23.4 0.0 6.7e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|292656028|ref|YP_003535925.1| - 0.0003 20.8 13.0 0.0049 16.8 13.0 2.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Carbam_trans_N PF02543.15 gi|292656028|ref|YP_003535925.1| - 0.021 14.5 0.0 0.51 9.9 0.0 2.1 1 1 0 1 1 1 0 Carbamoyltransferase N-terminus Ribosomal_S24e PF01282.19 gi|292656029|ref|YP_003535926.1| - 3.5e-26 91.0 0.2 4.4e-26 90.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|292656030|ref|YP_003535927.1| - 2.2e-39 133.9 0.1 2.8e-39 133.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HEM4 PF02602.15 gi|292656030|ref|YP_003535927.1| - 0.0036 16.7 1.4 0.054 12.8 1.0 2.0 1 1 1 2 2 2 1 Uroporphyrinogen-III synthase HemD Spt4 PF06093.13 gi|292656031|ref|YP_003535928.1| - 2e-15 56.6 0.1 2.3e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|292656031|ref|YP_003535928.1| - 0.00038 20.4 0.5 0.00046 20.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|292656031|ref|YP_003535928.1| - 0.012 15.8 0.1 0.012 15.7 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|292656031|ref|YP_003535928.1| - 0.023 14.7 0.5 0.027 14.5 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|292656031|ref|YP_003535928.1| - 0.024 13.9 3.2 0.033 13.5 3.2 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|292656031|ref|YP_003535928.1| - 0.03 14.1 4.1 0.042 13.6 4.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|292656031|ref|YP_003535928.1| - 0.047 14.4 1.0 10 6.9 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.6 gi|292656031|ref|YP_003535928.1| - 0.066 13.1 3.5 0.52 10.3 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RRN7 PF11781.8 gi|292656031|ref|YP_003535928.1| - 0.31 10.8 3.9 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|292656031|ref|YP_003535928.1| - 1.5 9.0 5.3 5.5 7.2 4.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain SHS2_Rpb7-N PF03876.17 gi|292656032|ref|YP_003535929.1| - 5.4e-15 55.5 0.1 9e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|292656032|ref|YP_003535929.1| - 3.6e-14 52.9 0.3 9e-14 51.6 0.3 1.7 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 gi|292656032|ref|YP_003535929.1| - 0.067 13.3 0.0 1.9 8.6 0.0 2.4 1 1 0 1 1 1 0 S1 domain RNA_pol_Rbc25 PF08292.12 gi|292656032|ref|YP_003535929.1| - 0.17 12.2 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|292656033|ref|YP_003535930.1| - 5.1e-41 139.6 0.3 5.8e-41 139.4 0.3 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|292656033|ref|YP_003535930.1| - 1e-05 25.8 0.0 0.00018 21.8 0.0 2.0 1 1 1 2 2 2 1 PIN domain DUF188 PF02639.14 gi|292656033|ref|YP_003535930.1| - 1.7e-05 24.5 0.2 2.9e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 Fcf1 PF04900.12 gi|292656033|ref|YP_003535930.1| - 0.0044 17.4 0.0 0.0059 17.0 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_3 PF13470.6 gi|292656033|ref|YP_003535930.1| - 0.022 15.5 4.7 0.43 11.3 4.7 2.1 1 1 0 1 1 1 0 PIN domain PIN_12 PF16289.5 gi|292656033|ref|YP_003535930.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 PIN domain eIF2_C PF09173.11 gi|292656034|ref|YP_003535931.1| - 5.2e-31 106.7 0.1 1.1e-30 105.7 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|292656034|ref|YP_003535931.1| - 7.8e-28 97.3 3.9 5.3e-27 94.6 3.9 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|292656034|ref|YP_003535931.1| - 1.1e-09 38.6 0.8 2.9e-09 37.2 0.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|292656034|ref|YP_003535931.1| - 0.00011 22.3 0.0 0.00029 20.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|292656034|ref|YP_003535931.1| - 0.00015 21.7 0.9 0.0097 15.8 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|292656034|ref|YP_003535931.1| - 0.0039 16.9 0.6 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|292656034|ref|YP_003535931.1| - 0.007 15.9 1.4 1 8.9 0.0 2.5 1 1 1 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|292656034|ref|YP_003535931.1| - 0.0077 16.2 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|292656034|ref|YP_003535931.1| - 0.02 14.3 0.1 0.58 9.6 0.1 2.1 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP-synt_Z PF16594.5 gi|292656037|ref|YP_003535934.1| - 0.0051 16.3 0.9 0.015 14.8 0.1 1.9 2 0 0 2 2 2 1 Putative AtpZ or ATP-synthase-associated UPF0102 PF02021.17 gi|292656037|ref|YP_003535934.1| - 0.051 13.8 0.1 0.056 13.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Lactamase_B_2 PF12706.7 gi|292656038|ref|YP_003535935.1| - 2.3e-15 56.7 0.5 3.2e-15 56.2 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292656038|ref|YP_003535935.1| - 0.00016 21.7 3.3 0.00022 21.3 3.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Ni_hydr_CYTB PF01292.20 gi|292656039|ref|YP_003535936.1| - 0.12 12.0 7.8 0.1 12.2 3.7 2.7 2 1 0 2 2 2 0 Prokaryotic cytochrome b561 Peptidase_U4 PF03419.13 gi|292656039|ref|YP_003535936.1| - 0.17 11.1 0.9 0.39 10.0 0.9 1.7 1 1 0 1 1 1 0 Sporulation factor SpoIIGA DUF202 PF02656.15 gi|292656039|ref|YP_003535936.1| - 0.34 11.4 15.0 0.43 11.1 0.7 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF202) AAA PF00004.29 gi|292656040|ref|YP_003535937.1| - 7e-40 136.5 0.0 1.5e-39 135.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292656040|ref|YP_003535937.1| - 3.9e-08 33.0 0.1 1.1e-07 31.6 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|292656040|ref|YP_003535937.1| - 1.8e-06 28.0 0.0 9.4e-06 25.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|292656040|ref|YP_003535937.1| - 2.2e-06 28.2 0.5 4.5e-05 24.0 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|292656040|ref|YP_003535937.1| - 4.6e-06 26.8 0.0 1.6e-05 25.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 gi|292656040|ref|YP_003535937.1| - 2.9e-05 23.9 0.1 0.00011 22.0 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|292656040|ref|YP_003535937.1| - 3.6e-05 24.0 1.8 0.0068 16.7 0.9 3.1 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|292656040|ref|YP_003535937.1| - 4.9e-05 23.6 1.4 0.00013 22.2 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|292656040|ref|YP_003535937.1| - 0.00013 22.4 3.5 0.0049 17.3 3.5 3.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|292656040|ref|YP_003535937.1| - 0.00016 21.3 1.0 0.011 15.4 0.0 3.3 2 2 1 3 3 3 1 AAA domain AAA_2 PF07724.14 gi|292656040|ref|YP_003535937.1| - 0.00019 21.6 0.0 0.0006 20.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 gi|292656040|ref|YP_003535937.1| - 0.001 18.6 0.1 0.0033 17.0 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|292656040|ref|YP_003535937.1| - 0.0013 19.2 0.1 0.0041 17.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain T2SSE PF00437.20 gi|292656040|ref|YP_003535937.1| - 0.0024 17.0 0.0 0.0044 16.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein SKI PF01202.22 gi|292656040|ref|YP_003535937.1| - 0.0026 17.9 0.0 0.0059 16.7 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.13 gi|292656040|ref|YP_003535937.1| - 0.0027 17.0 0.0 0.0055 16.0 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain Cytidylate_kin2 PF13189.6 gi|292656040|ref|YP_003535937.1| - 0.0041 17.3 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|292656040|ref|YP_003535937.1| - 0.0083 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|292656040|ref|YP_003535937.1| - 0.0098 15.6 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 Cytidylate kinase TniB PF05621.11 gi|292656040|ref|YP_003535937.1| - 0.011 15.1 0.0 1.1 8.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial TniB protein TsaE PF02367.17 gi|292656040|ref|YP_003535937.1| - 0.012 15.6 0.0 0.03 14.3 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|292656040|ref|YP_003535937.1| - 0.014 15.2 0.1 0.047 13.4 0.0 2.0 1 1 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|292656040|ref|YP_003535937.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|292656040|ref|YP_003535937.1| - 0.015 15.7 0.0 0.034 14.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|292656040|ref|YP_003535937.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|292656040|ref|YP_003535937.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|292656040|ref|YP_003535937.1| - 0.03 14.3 0.0 0.084 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|292656040|ref|YP_003535937.1| - 0.033 14.1 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|292656040|ref|YP_003535937.1| - 0.052 14.1 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Mg_chelatase PF01078.21 gi|292656040|ref|YP_003535937.1| - 0.054 12.9 0.0 0.098 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|292656040|ref|YP_003535937.1| - 0.09 12.7 0.0 7 6.5 0.0 2.4 1 1 1 2 2 2 0 NACHT domain SRP54 PF00448.22 gi|292656040|ref|YP_003535937.1| - 0.17 11.5 1.0 0.43 10.2 0.0 2.1 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|292656040|ref|YP_003535937.1| - 0.29 11.5 2.2 0.83 10.0 0.4 2.6 3 1 0 3 3 1 0 AAA domain Molybdopterin PF00384.22 gi|292656041|ref|YP_003535938.1| - 4.4e-52 177.5 0.0 5.7e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|292656041|ref|YP_003535938.1| - 2.5e-11 43.6 1.0 6e-11 42.4 0.2 2.1 2 1 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|292656041|ref|YP_003535938.1| - 1.6e-07 31.2 1.4 3.8e-07 30.0 1.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Thiolase_N PF00108.23 gi|292656043|ref|YP_003535940.1| - 2.6e-76 256.4 0.4 3.8e-76 255.9 0.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|292656043|ref|YP_003535940.1| - 4.1e-41 139.5 0.1 7e-41 138.7 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|292656043|ref|YP_003535940.1| - 0.0015 18.2 2.3 0.0015 18.2 2.3 2.2 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|292656043|ref|YP_003535940.1| - 0.0024 17.7 2.7 0.44 10.4 0.1 3.0 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|292656043|ref|YP_003535940.1| - 0.096 12.9 0.0 0.31 11.2 0.0 1.9 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF2275 PF10039.9 gi|292656044|ref|YP_003535941.1| - 0.071 13.2 0.5 0.081 13.0 0.5 1.0 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) Phage_Mu_Gp45 PF06890.12 gi|292656044|ref|YP_003535941.1| - 0.15 11.8 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein Na_H_Exchanger PF00999.21 gi|292656045|ref|YP_003535942.1| - 5.9e-38 130.7 38.8 7.9e-38 130.2 38.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|292656045|ref|YP_003535942.1| - 2.7e-30 105.0 1.7 3.5e-30 104.6 0.6 1.9 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.21 gi|292656045|ref|YP_003535942.1| - 9.1e-15 54.2 1.8 4.1e-14 52.2 0.3 2.5 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|292656045|ref|YP_003535942.1| - 2.9e-08 34.1 0.1 1.5e-07 31.8 0.1 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|292656045|ref|YP_003535942.1| - 5.6e-06 26.8 4.0 2.7e-05 24.7 1.0 3.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|292656045|ref|YP_003535942.1| - 0.00014 22.1 0.2 0.00046 20.5 0.2 2.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|292656045|ref|YP_003535942.1| - 0.0002 21.0 0.2 0.0006 19.5 0.2 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|292656045|ref|YP_003535942.1| - 0.00026 20.4 0.3 0.00041 19.7 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|292656045|ref|YP_003535942.1| - 0.00029 20.5 0.1 0.00047 19.8 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Epimerase PF01370.21 gi|292656045|ref|YP_003535942.1| - 0.0005 19.6 0.1 0.00082 18.9 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family XdhC_C PF13478.6 gi|292656045|ref|YP_003535942.1| - 0.0012 19.3 0.1 0.0028 18.2 0.1 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|292656045|ref|YP_003535942.1| - 0.0016 18.0 0.1 0.0029 17.2 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|292656045|ref|YP_003535942.1| - 0.0018 18.2 4.5 0.011 15.7 4.5 2.1 1 1 0 1 1 1 1 NAD(P)H-binding IlvN PF07991.12 gi|292656045|ref|YP_003535942.1| - 0.0019 17.8 0.1 0.004 16.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|292656045|ref|YP_003535942.1| - 0.002 18.6 0.5 0.0089 16.6 0.3 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|292656045|ref|YP_003535942.1| - 0.0034 17.3 1.8 0.0058 16.5 0.3 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|292656045|ref|YP_003535942.1| - 0.004 17.2 0.0 0.0093 16.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DFP PF04127.15 gi|292656045|ref|YP_003535942.1| - 0.0041 17.0 0.1 0.0096 15.8 0.1 1.6 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Pyr_redox_2 PF07992.14 gi|292656045|ref|YP_003535942.1| - 0.0058 15.9 0.1 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|292656045|ref|YP_003535942.1| - 0.017 14.2 0.1 0.026 13.6 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|292656045|ref|YP_003535942.1| - 0.022 13.8 0.1 0.043 12.9 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|292656045|ref|YP_003535942.1| - 0.028 13.8 1.2 0.036 13.4 0.1 1.7 2 0 0 2 2 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|292656045|ref|YP_003535942.1| - 0.03 14.5 0.1 0.066 13.4 0.1 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Spermine_synth PF01564.17 gi|292656045|ref|YP_003535942.1| - 0.03 13.7 0.1 0.049 13.0 0.1 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain NAD_binding_8 PF13450.6 gi|292656045|ref|YP_003535942.1| - 0.037 14.3 0.1 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|292656045|ref|YP_003535942.1| - 0.072 11.8 0.2 0.12 11.1 0.2 1.3 1 0 0 1 1 1 0 HI0933-like protein Castor_Poll_mid PF06241.12 gi|292656045|ref|YP_003535942.1| - 0.18 11.8 0.0 0.58 10.2 0.0 1.8 2 0 0 2 2 1 0 Castor and Pollux, part of voltage-gated ion channel NmrA PF05368.13 gi|292656045|ref|YP_003535942.1| - 0.3 10.6 2.2 1.7 8.1 1.4 2.3 1 1 1 2 2 2 0 NmrA-like family AMP-binding PF00501.28 gi|292656046|ref|YP_003535943.1| - 1.3e-93 314.0 0.0 1.5e-93 313.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|292656046|ref|YP_003535943.1| - 0.11 13.5 0.0 0.42 11.6 0.0 2.1 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain Lactamase_B PF00753.27 gi|292656047|ref|YP_003535944.1| - 1.5e-24 87.1 10.8 2.3e-24 86.5 10.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292656047|ref|YP_003535944.1| - 0.0004 19.9 2.4 0.00091 18.8 2.2 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_3 PF01381.22 gi|292656048|ref|YP_003535945.1| - 0.08 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix Na_sulph_symp PF00939.19 gi|292656049|ref|YP_003535946.1| - 2.9e-73 247.6 35.4 3.8e-73 247.2 35.4 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|292656049|ref|YP_003535946.1| - 1.4e-37 129.5 37.5 1.4e-37 129.5 37.5 2.2 1 1 1 2 2 2 1 Citrate transporter Seryl_tRNA_N PF02403.22 gi|292656050|ref|YP_003535947.1| - 9.1e-30 103.1 6.5 1.5e-29 102.4 6.5 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|292656050|ref|YP_003535947.1| - 1.9e-27 96.4 0.1 3.8e-27 95.4 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ZapB PF06005.12 gi|292656050|ref|YP_003535947.1| - 0.034 14.6 11.9 0.75 10.3 3.9 2.8 2 1 1 3 3 2 0 Cell division protein ZapB Allexi_40kDa PF05549.11 gi|292656050|ref|YP_003535947.1| - 0.072 12.6 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein GreA_GreB_N PF03449.15 gi|292656050|ref|YP_003535947.1| - 0.092 12.9 10.3 0.29 11.3 10.3 1.8 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal FapA PF03961.13 gi|292656050|ref|YP_003535947.1| - 0.099 11.2 1.5 0.14 10.7 1.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Golgin_A5 PF09787.9 gi|292656050|ref|YP_003535947.1| - 0.16 11.4 5.1 0.24 10.8 5.1 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Kre28 PF17097.5 gi|292656050|ref|YP_003535947.1| - 0.19 10.7 3.3 0.41 9.6 3.3 1.5 1 1 0 1 1 1 0 Spindle pole body component DUF1771 PF08590.10 gi|292656050|ref|YP_003535947.1| - 0.28 11.6 1.4 1.3 9.5 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Borrelia_P83 PF05262.11 gi|292656050|ref|YP_003535947.1| - 1 7.8 4.7 1.5 7.3 4.7 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein HalX PF08663.10 gi|292656050|ref|YP_003535947.1| - 1 9.7 14.7 0.094 13.0 5.9 3.3 2 1 1 3 3 3 0 HalX domain DUF4337 PF14235.6 gi|292656050|ref|YP_003535947.1| - 1.1 9.4 3.1 1.8 8.6 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) APG6_N PF17675.1 gi|292656050|ref|YP_003535947.1| - 2 8.9 14.0 6.8 7.2 14.2 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|292656050|ref|YP_003535947.1| - 2.1 8.5 5.3 36 4.6 0.1 2.4 1 1 0 2 2 2 0 bZIP transcription factor Spc24 PF08286.11 gi|292656050|ref|YP_003535947.1| - 2.3 8.5 7.5 12 6.2 3.8 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cnn_1N PF07989.11 gi|292656050|ref|YP_003535947.1| - 3.2 8.0 7.3 17 5.7 7.4 2.1 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 SnoaL_2 PF12680.7 gi|292656051|ref|YP_003535948.1| - 1.7e-11 44.7 0.5 2e-11 44.4 0.5 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|292656051|ref|YP_003535948.1| - 0.001 18.9 0.1 0.002 17.9 0.0 1.4 2 0 0 2 2 2 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 gi|292656051|ref|YP_003535948.1| - 0.02 15.3 0.1 0.026 14.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) NTF2 PF02136.20 gi|292656051|ref|YP_003535948.1| - 0.022 15.3 0.1 0.035 14.7 0.1 1.4 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Ribo_biogen_C PF04034.13 gi|292656052|ref|YP_003535949.1| - 2.1e-45 153.6 0.0 2.5e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|292656052|ref|YP_003535949.1| - 5.2e-09 35.8 0.0 8.3e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|292656052|ref|YP_003535949.1| - 0.019 14.7 0.0 0.052 13.2 0.0 1.7 1 1 0 1 1 1 0 DTW domain DUF5518 PF17647.1 gi|292656053|ref|YP_003535950.1| - 8.4e-17 61.4 44.8 9.3e-17 61.3 44.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF4212 PF13937.6 gi|292656053|ref|YP_003535950.1| - 0.38 11.2 4.6 0.2 12.1 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) NOG1_N PF17835.1 gi|292656054|ref|YP_003535951.1| - 6.8e-45 152.9 0.3 9.9e-45 152.4 0.3 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|292656054|ref|YP_003535951.1| - 1.8e-23 82.1 0.0 4.1e-23 80.9 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|292656054|ref|YP_003535951.1| - 3.3e-21 75.5 0.0 6.7e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|292656054|ref|YP_003535951.1| - 3.4e-11 42.9 0.0 5.6e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|292656054|ref|YP_003535951.1| - 0.00016 21.8 0.2 0.16 12.0 0.0 2.8 2 2 1 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|292656054|ref|YP_003535951.1| - 0.00037 19.9 0.0 0.00058 19.3 0.0 1.4 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|292656054|ref|YP_003535951.1| - 0.0012 18.8 0.0 0.028 14.3 0.0 2.4 2 1 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|292656054|ref|YP_003535951.1| - 0.0038 17.6 0.0 0.015 15.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain SRPRB PF09439.10 gi|292656054|ref|YP_003535951.1| - 0.024 14.1 0.0 0.062 12.7 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF1822 PF08852.11 gi|292656054|ref|YP_003535951.1| - 0.035 13.1 0.1 0.05 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) OmpH PF03938.14 gi|292656054|ref|YP_003535951.1| - 0.072 13.4 0.9 6.7 7.1 0.2 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) AAA_18 PF13238.6 gi|292656054|ref|YP_003535951.1| - 0.11 13.0 0.0 0.64 10.6 0.0 2.2 2 2 1 3 3 3 0 AAA domain Roc PF08477.13 gi|292656054|ref|YP_003535951.1| - 0.14 12.4 0.0 6.9 6.9 0.0 2.9 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase DUF3958 PF13125.6 gi|292656054|ref|YP_003535951.1| - 0.14 12.3 0.7 0.72 10.1 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3958) Ras PF00071.22 gi|292656054|ref|YP_003535951.1| - 0.15 11.7 0.1 1.3 8.6 0.0 2.6 2 1 0 2 2 2 0 Ras family SIMPL PF04402.14 gi|292656055|ref|YP_003535952.1| - 8.9e-41 140.6 10.6 1e-40 140.4 10.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF389 PF04087.14 gi|292656056|ref|YP_003535953.1| - 1.7e-34 118.9 15.4 1.7e-34 118.9 15.4 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) 5-FTHF_cyc-lig PF01812.20 gi|292656057|ref|YP_003535954.1| - 4.3e-29 101.7 0.0 5.1e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family HTH_10 PF04967.12 gi|292656058|ref|YP_003535955.1| - 3.1e-16 58.9 0.2 8.1e-16 57.6 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|292656058|ref|YP_003535955.1| - 0.00018 21.0 0.1 0.00033 20.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|292656058|ref|YP_003535955.1| - 0.00055 19.7 0.7 0.0014 18.4 0.7 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|292656058|ref|YP_003535955.1| - 0.0011 18.9 0.1 0.003 17.4 0.1 1.8 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|292656058|ref|YP_003535955.1| - 0.0015 18.0 0.1 0.018 14.5 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|292656058|ref|YP_003535955.1| - 0.079 12.9 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family AbiEi_4 PF13338.6 gi|292656058|ref|YP_003535955.1| - 0.082 13.1 0.3 0.32 11.2 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Fe_dep_repress PF01325.19 gi|292656058|ref|YP_003535955.1| - 0.15 12.2 0.0 8.9 6.6 0.0 2.5 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|292656059|ref|YP_003535956.1| - 0.018 15.1 2.3 0.075 13.1 2.3 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain MMR_HSR1 PF01926.23 gi|292656060|ref|YP_003535957.1| - 5.5e-20 71.6 0.0 7.9e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|292656060|ref|YP_003535957.1| - 4.8e-13 48.9 0.2 7.2e-12 45.1 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|292656060|ref|YP_003535957.1| - 8.2e-06 25.8 0.0 0.0022 17.9 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|292656060|ref|YP_003535957.1| - 3.2e-05 23.5 0.4 0.0063 16.1 0.1 2.4 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|292656060|ref|YP_003535957.1| - 6e-05 22.5 0.1 0.00011 21.7 0.1 1.4 1 1 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|292656060|ref|YP_003535957.1| - 0.00086 19.4 0.2 0.02 15.0 0.1 2.1 1 1 1 2 2 2 1 Dynamin family ABC_tran PF00005.27 gi|292656060|ref|YP_003535957.1| - 0.0063 17.0 0.0 0.0081 16.7 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|292656060|ref|YP_003535957.1| - 0.011 16.3 0.0 0.019 15.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|292656060|ref|YP_003535957.1| - 0.014 15.6 0.3 0.034 14.4 0.0 1.8 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|292656060|ref|YP_003535957.1| - 0.015 15.6 0.4 0.091 13.0 0.4 2.4 1 1 1 2 2 2 0 AAA domain Ras PF00071.22 gi|292656060|ref|YP_003535957.1| - 0.046 13.3 0.2 0.12 12.0 0.0 1.8 2 1 0 2 2 2 0 Ras family RNA_helicase PF00910.22 gi|292656060|ref|YP_003535957.1| - 0.074 13.5 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|292656060|ref|YP_003535957.1| - 0.091 12.5 2.5 0.67 9.7 0.2 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein TIP49 PF06068.13 gi|292656060|ref|YP_003535957.1| - 0.1 11.8 0.3 0.17 11.1 0.3 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain SRPRB PF09439.10 gi|292656060|ref|YP_003535957.1| - 0.1 12.0 0.1 0.19 11.2 0.1 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|292656060|ref|YP_003535957.1| - 0.13 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|292656060|ref|YP_003535957.1| - 0.13 12.6 0.3 0.45 10.9 0.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.9 gi|292656060|ref|YP_003535957.1| - 0.21 11.3 0.5 0.65 9.7 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation 2-Hacid_dh_C PF02826.19 gi|292656061|ref|YP_003535958.1| - 1.8e-54 183.8 0.0 2.4e-54 183.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|292656061|ref|YP_003535958.1| - 4.6e-05 23.1 0.1 6.6e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|292656061|ref|YP_003535958.1| - 8.4e-05 22.8 0.1 0.00013 22.2 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|292656061|ref|YP_003535958.1| - 0.00054 20.5 0.1 0.00093 19.7 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|292656061|ref|YP_003535958.1| - 0.0017 18.5 0.0 0.0059 16.7 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|292656061|ref|YP_003535958.1| - 0.012 15.5 0.1 0.018 14.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|292656061|ref|YP_003535958.1| - 0.023 15.1 0.1 0.045 14.2 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.12 gi|292656061|ref|YP_003535958.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|292656061|ref|YP_003535958.1| - 0.066 13.5 0.3 0.13 12.5 0.2 1.7 1 1 0 1 1 1 0 TrkA-N domain DUF3179 PF11376.8 gi|292656062|ref|YP_003535959.1| - 4.2e-14 52.6 0.0 4.8e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) IF-2B PF01008.17 gi|292656063|ref|YP_003535960.1| - 1e-38 133.2 0.2 3e-38 131.6 0.2 1.7 1 1 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|292656063|ref|YP_003535960.1| - 7.8e-11 42.1 4.8 1.6e-10 41.1 2.9 2.1 1 1 1 2 2 2 1 NUDIX domain NUDIX_4 PF14815.6 gi|292656063|ref|YP_003535960.1| - 0.00092 19.2 0.1 0.0022 18.0 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain YjeF_N PF03853.15 gi|292656063|ref|YP_003535960.1| - 0.075 12.9 3.1 0.095 12.6 1.4 1.9 1 1 1 2 2 2 0 YjeF-related protein N-terminus Metallophos_2 PF12850.7 gi|292656064|ref|YP_003535961.1| - 2.3e-27 96.2 0.3 2.6e-27 96.1 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|292656064|ref|YP_003535961.1| - 3.1e-05 24.5 0.4 0.00038 21.0 0.0 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase F420_ligase PF01996.16 gi|292656065|ref|YP_003535962.1| - 1.8e-58 197.8 0.0 2.2e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|292656066|ref|YP_003535963.1| - 2.5e-61 207.8 3.2 2.6e-61 207.8 2.4 1.3 1 1 0 1 1 1 1 Luciferase-like monooxygenase Nudix_N_2 PF14803.6 gi|292656067|ref|YP_003535964.1| - 0.0011 18.9 0.6 0.0023 17.8 0.6 1.6 1 1 0 1 1 1 1 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|292656067|ref|YP_003535964.1| - 0.0013 18.8 2.1 0.019 15.0 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292656067|ref|YP_003535964.1| - 0.0018 18.2 1.3 0.0044 16.9 1.3 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|292656067|ref|YP_003535964.1| - 0.0034 17.4 0.6 0.0054 16.7 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ACC PF17848.1 gi|292656067|ref|YP_003535964.1| - 0.0069 16.4 0.8 0.0099 15.9 0.8 1.2 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_SprT PF17283.2 gi|292656067|ref|YP_003535964.1| - 0.1 12.5 1.4 10 6.1 0.2 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|292656067|ref|YP_003535964.1| - 0.14 12.1 1.3 0.19 11.7 0.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|292656067|ref|YP_003535964.1| - 0.64 9.7 3.5 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|292656067|ref|YP_003535964.1| - 1.1 8.8 6.3 0.27 10.7 2.8 2.0 2 1 0 2 2 2 0 zinc-ribbon domain MutL_C PF08676.11 gi|292656068|ref|YP_003535965.1| - 2.2e-31 108.6 0.0 3.6e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|292656068|ref|YP_003535965.1| - 1.3e-27 95.8 0.0 2.1e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|292656068|ref|YP_003535965.1| - 1.3e-11 44.4 0.1 2.5e-11 43.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|292656068|ref|YP_003535965.1| - 2.5e-05 24.7 0.0 7.7e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|292656069|ref|YP_003535966.1| - 4.5e-80 268.1 0.0 7.3e-80 267.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|292656069|ref|YP_003535966.1| - 3.8e-38 131.6 3.4 8.3e-38 130.5 3.4 1.6 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|292656069|ref|YP_003535966.1| - 8.1e-35 119.5 0.0 1.5e-34 118.6 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|292656069|ref|YP_003535966.1| - 2.3e-29 101.5 0.0 5.5e-29 100.4 0.0 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|292656069|ref|YP_003535966.1| - 7.6e-11 42.4 0.0 3.3e-10 40.4 0.0 2.1 1 1 0 1 1 1 1 MutS domain II AAA_29 PF13555.6 gi|292656069|ref|YP_003535966.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|292656069|ref|YP_003535966.1| - 0.18 11.8 0.0 0.49 10.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|292656069|ref|YP_003535966.1| - 0.18 11.3 4.6 0.36 10.4 0.1 3.4 2 1 1 3 3 3 0 AAA domain AAA_3 PF07726.11 gi|292656070|ref|YP_003535967.1| - 3e-58 195.3 0.1 4.8e-58 194.7 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|292656070|ref|YP_003535967.1| - 2.3e-18 65.8 5.6 5e-18 64.7 5.6 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|292656070|ref|YP_003535967.1| - 1.8e-13 50.7 0.0 3.7e-13 49.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|292656070|ref|YP_003535967.1| - 8e-08 32.8 0.0 1.5e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|292656070|ref|YP_003535967.1| - 8.3e-05 22.4 0.0 0.00079 19.2 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|292656070|ref|YP_003535967.1| - 0.00039 19.9 0.0 0.0023 17.3 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|292656070|ref|YP_003535967.1| - 0.0012 18.6 0.1 0.011 15.5 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|292656070|ref|YP_003535967.1| - 0.0075 15.4 0.0 0.018 14.2 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|292656070|ref|YP_003535967.1| - 0.021 15.2 0.3 0.16 12.4 0.3 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_2 PF07724.14 gi|292656070|ref|YP_003535967.1| - 0.14 12.3 0.0 0.45 10.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.18 gi|292656071|ref|YP_003535968.1| - 9.1e-17 61.1 0.2 2.7e-16 59.6 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF58 Pilus_CpaD PF09476.10 gi|292656071|ref|YP_003535968.1| - 0.058 13.1 0.1 0.26 11.0 0.1 1.9 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) Transglut_core PF01841.19 gi|292656072|ref|YP_003535969.1| - 3.8e-30 104.6 0.1 9e-30 103.4 0.1 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|292656072|ref|YP_003535969.1| - 1.8e-07 31.3 9.4 9.6e-07 29.0 9.4 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|292656072|ref|YP_003535969.1| - 0.00021 21.2 0.6 0.0012 18.7 0.0 2.5 2 1 0 2 2 2 1 Transglutaminase-like superfamily DUF4218 PF13960.6 gi|292656072|ref|YP_003535969.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) DUF4897 PF16238.5 gi|292656073|ref|YP_003535970.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_27 PF13463.6 gi|292656073|ref|YP_003535970.1| - 0.095 13.2 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|292656073|ref|YP_003535970.1| - 0.13 12.3 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|292656073|ref|YP_003535970.1| - 0.16 11.6 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4366 PF14283.6 gi|292656073|ref|YP_003535970.1| - 0.18 11.9 0.3 0.47 10.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) Med3 PF11593.8 gi|292656073|ref|YP_003535970.1| - 0.92 8.6 7.3 1.8 7.7 7.3 1.4 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal DUF4693 PF15764.5 gi|292656074|ref|YP_003535971.1| - 0.03 13.9 1.0 0.043 13.4 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4693) Fmp27_WPPW PF10359.9 gi|292656074|ref|YP_003535971.1| - 0.08 11.8 0.3 0.13 11.1 0.3 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain MerR-DNA-bind PF09278.11 gi|292656074|ref|YP_003535971.1| - 0.17 12.4 2.2 0.62 10.6 0.5 2.4 2 0 0 2 2 2 0 MerR, DNA binding SUI1 PF01253.22 gi|292656075|ref|YP_003535972.1| - 1.1e-22 80.3 0.0 1.4e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|292656075|ref|YP_003535972.1| - 0.0038 17.5 0.0 0.0063 16.8 0.0 1.6 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|292656075|ref|YP_003535972.1| - 0.017 14.9 0.5 0.02 14.6 0.5 1.1 1 0 0 1 1 1 0 DTW domain Rhodanese PF00581.20 gi|292656076|ref|YP_003535973.1| - 1e-09 38.9 0.0 1.3e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|292656077|ref|YP_003535974.1| - 4e-14 52.8 0.9 6.2e-14 52.2 0.9 1.2 1 0 0 1 1 1 1 NUDIX domain zf-C2H2_9 PF16293.5 gi|292656079|ref|YP_003535976.1| - 0.0075 16.1 0.2 0.013 15.3 0.2 1.3 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) HalOD1 PF18545.1 gi|292656080|ref|YP_003535977.1| - 9.7e-19 67.4 0.6 2.8e-18 66.0 0.6 1.7 1 1 0 1 1 1 1 Halobacterial output domain 1 BAT PF15915.5 gi|292656081|ref|YP_003535978.1| - 4.7e-32 111.0 9.5 4.7e-32 111.0 9.5 1.6 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|292656081|ref|YP_003535978.1| - 5.6e-18 64.5 0.0 1.1e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.26 gi|292656081|ref|YP_003535978.1| - 0.00045 20.8 0.1 0.0023 18.6 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|292656081|ref|YP_003535978.1| - 0.013 15.8 0.2 0.035 14.4 0.2 1.8 1 0 0 1 1 1 0 GAF domain HTH_20 PF12840.7 gi|292656081|ref|YP_003535978.1| - 0.051 13.7 0.9 0.26 11.4 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|292656081|ref|YP_003535978.1| - 0.094 12.3 0.2 6.3 6.4 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PAS PF00989.25 gi|292656082|ref|YP_003535979.1| - 2.6e-19 69.3 0.0 6.4e-11 42.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|292656082|ref|YP_003535979.1| - 4.2e-19 68.8 12.0 2.3e-09 37.5 0.5 3.8 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|292656082|ref|YP_003535979.1| - 1.1e-13 51.3 0.0 9.3e-06 25.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|292656082|ref|YP_003535979.1| - 2e-13 51.1 0.2 4.7e-11 43.4 0.0 2.8 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|292656082|ref|YP_003535979.1| - 8.5e-13 48.8 15.2 1.5e-09 38.3 1.2 3.9 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.7 gi|292656082|ref|YP_003535979.1| - 3.7e-11 42.8 0.4 0.00028 20.8 0.0 3.2 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|292656082|ref|YP_003535979.1| - 8.6e-07 29.4 0.2 0.00027 21.3 0.0 3.7 3 1 0 3 3 3 1 GAF domain PAS_7 PF12860.7 gi|292656082|ref|YP_003535979.1| - 1.2e-05 25.4 0.7 0.46 10.7 0.1 4.2 3 2 0 3 3 3 2 PAS fold DUF4140 PF13600.6 gi|292656082|ref|YP_003535979.1| - 0.029 14.8 0.9 0.32 11.4 0.5 2.7 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Response_reg PF00072.24 gi|292656082|ref|YP_003535979.1| - 0.08 13.1 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 Response regulator receiver domain Acetyltransf_1 PF00583.25 gi|292656083|ref|YP_003535980.1| - 4.6e-17 62.3 0.0 5.8e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|292656083|ref|YP_003535980.1| - 3e-13 50.0 0.0 4.3e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656083|ref|YP_003535980.1| - 1.9e-12 47.2 0.0 2.1e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656083|ref|YP_003535980.1| - 1.2e-09 38.0 0.0 2.4e-09 37.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|292656083|ref|YP_003535980.1| - 1e-05 25.6 0.0 2.7e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|292656083|ref|YP_003535980.1| - 0.0015 18.3 0.0 0.002 17.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 gi|292656083|ref|YP_003535980.1| - 0.0025 17.5 0.0 0.005 16.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|292656083|ref|YP_003535980.1| - 0.025 15.2 0.0 0.031 15.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Aconitase PF00330.20 gi|292656084|ref|YP_003535981.1| - 3.1e-105 352.8 0.7 1.9e-103 347.0 0.7 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|292656084|ref|YP_003535981.1| - 2.3e-21 76.5 0.0 4.6e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain dUTPase PF00692.19 gi|292656085|ref|YP_003535982.1| - 2.6e-11 43.3 0.0 3.9e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|292656085|ref|YP_003535982.1| - 0.0032 16.3 0.0 0.0053 15.6 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AAA PF00004.29 gi|292656086|ref|YP_003535983.1| - 3.7e-45 153.6 0.6 1.8e-44 151.3 0.1 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292656086|ref|YP_003535983.1| - 8.4e-14 51.1 1.4 2.3e-13 49.7 1.4 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|292656086|ref|YP_003535983.1| - 1.6e-08 34.8 0.1 4.1e-08 33.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|292656086|ref|YP_003535983.1| - 1.8e-07 31.3 0.5 7.4e-07 29.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|292656086|ref|YP_003535983.1| - 2.4e-07 30.6 0.2 1.2e-06 28.4 0.0 2.2 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|292656086|ref|YP_003535983.1| - 5e-07 30.3 1.9 0.0005 20.5 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain Prot_ATP_ID_OB PF16450.5 gi|292656086|ref|YP_003535983.1| - 5e-06 26.4 0.0 1.5e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|292656086|ref|YP_003535983.1| - 2.2e-05 23.7 0.0 4.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|292656086|ref|YP_003535983.1| - 2.6e-05 24.5 3.7 0.0011 19.2 0.3 3.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|292656086|ref|YP_003535983.1| - 0.00017 22.1 0.0 0.001 19.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain Prot_ATP_OB_N PF17758.1 gi|292656086|ref|YP_003535983.1| - 0.00023 20.8 0.0 0.0007 19.2 0.0 1.9 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain TIP49 PF06068.13 gi|292656086|ref|YP_003535983.1| - 0.00026 20.3 0.0 0.0011 18.2 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|292656086|ref|YP_003535983.1| - 0.00043 20.3 0.1 0.0027 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|292656086|ref|YP_003535983.1| - 0.0013 18.2 0.3 0.0039 16.6 0.1 1.8 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|292656086|ref|YP_003535983.1| - 0.0026 18.2 1.0 0.018 15.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|292656086|ref|YP_003535983.1| - 0.0026 17.5 0.0 0.035 13.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_24 PF13479.6 gi|292656086|ref|YP_003535983.1| - 0.0033 17.2 0.1 0.0087 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|292656086|ref|YP_003535983.1| - 0.0034 17.2 0.1 0.0083 15.9 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|292656086|ref|YP_003535983.1| - 0.0039 17.4 0.4 0.013 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|292656086|ref|YP_003535983.1| - 0.0041 17.1 1.4 0.083 12.8 0.0 2.6 3 0 0 3 3 2 1 NTPase RNA_helicase PF00910.22 gi|292656086|ref|YP_003535983.1| - 0.0061 16.9 0.0 0.024 15.0 0.0 2.1 2 0 0 2 2 1 1 RNA helicase AAA_7 PF12775.7 gi|292656086|ref|YP_003535983.1| - 0.0082 15.7 0.0 0.017 14.6 0.0 1.5 1 1 0 1 1 1 1 P-loop containing dynein motor region TsaE PF02367.17 gi|292656086|ref|YP_003535983.1| - 0.0093 16.0 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|292656086|ref|YP_003535983.1| - 0.013 15.5 0.1 0.081 12.8 0.0 2.1 1 1 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|292656086|ref|YP_003535983.1| - 0.013 15.7 0.5 0.033 14.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain IPT PF01745.16 gi|292656086|ref|YP_003535983.1| - 0.019 14.4 0.6 0.84 9.0 0.0 2.5 3 0 0 3 3 3 0 Isopentenyl transferase ATPase PF06745.13 gi|292656086|ref|YP_003535983.1| - 0.02 14.2 0.1 0.13 11.6 0.1 2.4 1 1 0 1 1 1 0 KaiC AAA_3 PF07726.11 gi|292656086|ref|YP_003535983.1| - 0.029 14.2 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DMPK_coil PF08826.10 gi|292656086|ref|YP_003535983.1| - 0.029 14.5 1.4 0.11 12.7 1.4 2.0 1 0 0 1 1 1 0 DMPK coiled coil domain like NB-ARC PF00931.22 gi|292656086|ref|YP_003535983.1| - 0.032 13.4 0.0 0.12 11.6 0.0 1.9 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|292656086|ref|YP_003535983.1| - 0.041 13.5 7.1 0.16 11.5 0.1 3.5 2 1 1 3 3 3 0 AAA domain KAP_NTPase PF07693.14 gi|292656086|ref|YP_003535983.1| - 0.041 13.1 0.1 8 5.6 0.0 2.3 1 1 0 2 2 2 0 KAP family P-loop domain AAA_11 PF13086.6 gi|292656086|ref|YP_003535983.1| - 0.049 13.4 0.1 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|292656086|ref|YP_003535983.1| - 0.051 12.7 0.0 0.097 11.7 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_13 PF13166.6 gi|292656086|ref|YP_003535983.1| - 0.054 12.1 0.4 8.6 4.9 0.7 2.3 2 0 0 2 2 2 0 AAA domain Taxilin PF09728.9 gi|292656086|ref|YP_003535983.1| - 0.061 12.5 0.4 0.097 11.8 0.4 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Atrophin-1 PF03154.15 gi|292656086|ref|YP_003535983.1| - 0.07 11.4 0.3 0.1 10.9 0.3 1.1 1 0 0 1 1 1 0 Atrophin-1 family ATPase_2 PF01637.18 gi|292656086|ref|YP_003535983.1| - 0.084 12.8 0.5 0.69 9.8 0.0 2.4 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea COG6 PF06419.11 gi|292656086|ref|YP_003535983.1| - 0.088 11.0 0.5 0.13 10.4 0.5 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 ABC_tran PF00005.27 gi|292656086|ref|YP_003535983.1| - 0.13 12.7 0.1 0.51 10.9 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DUF2203 PF09969.9 gi|292656086|ref|YP_003535983.1| - 0.18 12.5 0.9 0.5 11.1 0.4 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) DUF2721 PF11026.8 gi|292656086|ref|YP_003535983.1| - 0.32 10.9 0.8 0.54 10.2 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) ZapB PF06005.12 gi|292656086|ref|YP_003535983.1| - 0.66 10.5 5.2 0.21 12.1 1.2 2.2 3 0 0 3 3 2 0 Cell division protein ZapB BLOC1_2 PF10046.9 gi|292656086|ref|YP_003535983.1| - 0.81 10.0 6.6 0.42 10.9 0.7 3.1 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PvlArgDC PF01862.16 gi|292656087|ref|YP_003535984.1| - 6.6e-35 120.3 0.4 7.3e-35 120.2 0.4 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) HATPase_c PF02518.26 gi|292656088|ref|YP_003535985.1| - 1.3e-13 51.5 0.0 2.5e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|292656088|ref|YP_003535985.1| - 7.1e-08 32.5 0.0 1.5e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|292656088|ref|YP_003535985.1| - 0.0012 18.9 1.5 0.0018 18.3 0.3 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|292656088|ref|YP_003535985.1| - 0.021 14.7 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|292656088|ref|YP_003535985.1| - 0.04 13.5 0.1 0.12 12.0 0.1 1.9 1 1 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|292656088|ref|YP_003535985.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PEP-CTERM PF07589.11 gi|292656090|ref|YP_003535987.1| - 1.6 8.9 7.8 1.2 9.4 2.2 2.4 2 1 0 2 2 2 0 PEP-CTERM motif Rhomboid PF01694.22 gi|292656091|ref|YP_003535988.1| - 0.066 13.2 0.7 0.074 13.0 0.7 1.1 1 0 0 1 1 1 0 Rhomboid family GTP_EFTU PF00009.27 gi|292656092|ref|YP_003535989.1| - 2.4e-31 108.8 0.0 1.8e-30 105.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|292656092|ref|YP_003535989.1| - 3e-24 84.7 0.1 7.9e-24 83.4 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|292656092|ref|YP_003535989.1| - 3.5e-23 81.7 0.6 8.4e-23 80.5 0.6 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|292656092|ref|YP_003535989.1| - 1.8e-15 57.1 7.0 1.8e-11 44.2 0.1 3.0 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|292656092|ref|YP_003535989.1| - 2.4e-08 34.1 0.2 7.1e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|292656092|ref|YP_003535989.1| - 0.00019 21.6 0.1 0.25 11.4 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Roc PF08477.13 gi|292656092|ref|YP_003535989.1| - 0.0043 17.3 0.0 0.021 15.0 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|292656092|ref|YP_003535989.1| - 0.021 14.6 0.0 0.077 12.8 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein EssA PF10661.9 gi|292656092|ref|YP_003535989.1| - 0.033 14.0 0.1 0.081 12.8 0.1 1.6 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA Ras PF00071.22 gi|292656092|ref|YP_003535989.1| - 0.05 13.2 0.0 0.17 11.5 0.0 1.9 1 1 0 1 1 1 0 Ras family PRC PF05239.16 gi|292656093|ref|YP_003535990.1| - 1.6e-10 40.9 0.0 1.7e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain PIN_6 PF17146.4 gi|292656094|ref|YP_003535991.1| - 5e-10 39.7 0.0 9.2e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|292656094|ref|YP_003535991.1| - 0.00099 18.6 0.3 0.0014 18.1 0.3 1.3 1 0 0 1 1 1 1 PINc domain ribonuclease HypA PF01155.19 gi|292656094|ref|YP_003535991.1| - 0.0011 18.9 0.1 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|292656094|ref|YP_003535991.1| - 0.0014 18.7 1.9 0.0033 17.5 1.9 1.6 1 0 0 1 1 1 1 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|292656094|ref|YP_003535991.1| - 0.0078 16.2 0.8 0.012 15.5 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbons DUF4411 PF14367.6 gi|292656094|ref|YP_003535991.1| - 0.013 15.4 0.1 0.04 13.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) Mut7-C PF01927.16 gi|292656094|ref|YP_003535991.1| - 0.014 15.5 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain DZR PF12773.7 gi|292656094|ref|YP_003535991.1| - 0.016 15.2 0.6 0.025 14.6 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|292656094|ref|YP_003535991.1| - 0.017 15.9 0.1 0.022 15.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zf-C3HC4_3 PF13920.6 gi|292656094|ref|YP_003535991.1| - 0.027 14.3 1.1 0.038 13.9 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) C1_2 PF03107.16 gi|292656094|ref|YP_003535991.1| - 0.031 14.6 0.2 0.052 13.9 0.2 1.4 1 0 0 1 1 1 0 C1 domain Rad50_zn_hook PF04423.14 gi|292656094|ref|YP_003535991.1| - 0.049 13.5 1.6 0.9 9.4 0.5 2.5 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-C2H2 PF00096.26 gi|292656094|ref|YP_003535991.1| - 0.055 13.9 2.0 5.7 7.6 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prok-RING_4 PF14447.6 gi|292656094|ref|YP_003535991.1| - 0.076 12.9 1.5 0.13 12.1 1.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 NOB1_Zn_bind PF08772.11 gi|292656094|ref|YP_003535991.1| - 0.088 13.0 1.0 0.17 12.1 1.0 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC_2 PF13913.6 gi|292656094|ref|YP_003535991.1| - 0.097 12.6 0.5 0.097 12.6 0.5 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.6 gi|292656094|ref|YP_003535991.1| - 0.098 13.5 1.5 15 6.8 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.6 gi|292656094|ref|YP_003535991.1| - 0.32 11.0 3.0 1.9 8.5 3.0 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_3 PF13878.6 gi|292656094|ref|YP_003535991.1| - 0.42 10.5 2.5 0.48 10.3 0.5 2.0 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C3HC4_2 PF13923.6 gi|292656094|ref|YP_003535991.1| - 0.44 10.4 2.3 0.77 9.6 2.3 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) CPBP PF02517.16 gi|292656095|ref|YP_003535992.1| - 1.1e-15 57.7 6.3 1.1e-15 57.7 6.3 2.0 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Pik1 PF11522.8 gi|292656095|ref|YP_003535992.1| - 0.55 10.2 2.8 1.8 8.6 1.2 2.4 2 0 0 2 2 2 0 Yeast phosphatidylinositol-4-OH kinase Pik1 PGI PF00342.19 gi|292656096|ref|YP_003535993.1| - 2.6e-31 108.8 0.0 1.1e-27 96.8 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase Methyltransf_30 PF05430.11 gi|292656096|ref|YP_003535993.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF378 PF04070.12 gi|292656097|ref|YP_003535994.1| - 0.15 11.9 4.6 0.46 10.4 4.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF378) ABC2_membrane_3 PF12698.7 gi|292656097|ref|YP_003535994.1| - 0.89 8.6 5.2 1.1 8.3 5.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|292656097|ref|YP_003535994.1| - 1.8 6.7 5.2 2.1 6.5 5.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SNARE_assoc PF09335.11 gi|292656098|ref|YP_003535995.1| - 2.8e-23 82.7 5.5 2.8e-23 82.7 5.5 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein PHP_C PF13263.6 gi|292656099|ref|YP_003535996.1| - 7e-20 70.5 0.4 7e-20 70.5 0.4 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|292656099|ref|YP_003535996.1| - 3.6e-11 43.7 0.0 3.8e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 PHP domain CDP-OH_P_transf PF01066.21 gi|292656100|ref|YP_003535997.1| - 6.5e-09 36.4 0.3 6.5e-09 36.4 0.3 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Acetyltransf_1 PF00583.25 gi|292656101|ref|YP_003535998.1| - 2.6e-09 37.4 0.0 3.8e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|292656101|ref|YP_003535998.1| - 1.7e-06 27.9 0.0 4.7e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|292656101|ref|YP_003535998.1| - 0.00022 21.3 0.1 0.0005 20.1 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656101|ref|YP_003535998.1| - 0.00029 20.8 0.0 0.00046 20.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656101|ref|YP_003535998.1| - 0.0005 20.4 0.0 0.00074 19.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|292656101|ref|YP_003535998.1| - 0.013 16.2 0.1 0.018 15.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|292656101|ref|YP_003535998.1| - 0.017 15.1 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|292656101|ref|YP_003535998.1| - 0.022 14.9 0.8 0.044 13.9 0.1 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase CDC48_2 PF02933.17 gi|292656103|ref|YP_003536000.1| - 0.026 14.3 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 SecD_SecF PF02355.16 gi|292656104|ref|YP_003536001.1| - 4.5e-28 97.9 13.2 4.5e-28 97.9 13.2 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|292656104|ref|YP_003536001.1| - 8.2e-06 25.1 0.0 2.7e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|292656104|ref|YP_003536001.1| - 0.014 13.5 13.7 0.019 13.1 13.7 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|292656105|ref|YP_003536002.1| - 1.3e-13 50.8 4.9 2.5e-13 49.8 4.9 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|292656105|ref|YP_003536002.1| - 0.0012 17.8 10.2 0.0012 17.8 10.2 1.7 2 0 0 2 2 2 1 MMPL family Sterol-sensing PF12349.8 gi|292656105|ref|YP_003536002.1| - 0.0018 18.1 1.5 0.0033 17.3 1.5 1.3 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation MGC-24 PF05283.11 gi|292656105|ref|YP_003536002.1| - 0.13 12.7 0.4 0.33 11.4 0.0 1.8 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin RNase_HII PF01351.18 gi|292656107|ref|YP_003536004.1| - 1.5e-39 135.9 0.0 1.7e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Cecropin PF00272.19 gi|292656107|ref|YP_003536004.1| - 0.15 11.8 1.1 0.35 10.6 1.1 1.6 1 0 0 1 1 1 0 Cecropin family THUMP PF02926.17 gi|292656108|ref|YP_003536005.1| - 7e-09 35.9 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|292656108|ref|YP_003536005.1| - 0.00093 19.5 0.2 0.00093 19.5 0.2 2.9 2 1 0 2 2 2 1 DnaJ central domain Anti-TRAP PF15777.5 gi|292656108|ref|YP_003536005.1| - 3 7.9 11.0 0.14 12.1 1.7 2.8 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein EamA PF00892.20 gi|292656109|ref|YP_003536006.1| - 1.3e-41 142.0 34.1 1.5e-21 77.0 17.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|292656109|ref|YP_003536006.1| - 0.36 10.9 6.9 0.32 11.0 1.3 2.6 3 0 0 3 3 3 0 Putative transmembrane family 234 TAT_signal PF10518.9 gi|292656110|ref|YP_003536007.1| - 5.2e-05 22.9 1.0 9.2e-05 22.1 1.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Mucin PF01456.17 gi|292656110|ref|YP_003536007.1| - 4.7 7.2 39.4 0.66 10.0 24.4 2.2 2 0 0 2 2 2 0 Mucin-like glycoprotein DUF4112 PF13430.6 gi|292656111|ref|YP_003536008.1| - 9.4e-16 58.0 0.0 1.7e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) PrgH PF09480.10 gi|292656111|ref|YP_003536008.1| - 0.051 12.9 0.2 0.058 12.7 0.2 1.0 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) HpcH_HpaI PF03328.14 gi|292656112|ref|YP_003536009.1| - 1.6e-06 27.5 0.0 5.6e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PEP_mutase PF13714.6 gi|292656113|ref|YP_003536010.1| - 6.6e-41 140.3 0.1 8.1e-41 140.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|292656113|ref|YP_003536010.1| - 6.6e-31 107.4 2.1 3.8e-15 55.4 0.0 2.2 1 1 1 2 2 2 2 Isocitrate lyase family HMGL-like PF00682.19 gi|292656113|ref|YP_003536010.1| - 0.04 13.5 0.1 0.065 12.8 0.1 1.4 1 0 0 1 1 1 0 HMGL-like Virulence_fact PF13769.6 gi|292656113|ref|YP_003536010.1| - 0.14 12.4 1.0 0.59 10.4 0.2 2.3 2 0 0 2 2 2 0 Virulence factor ABC_tran PF00005.27 gi|292656114|ref|YP_003536011.1| - 1.3e-30 106.7 0.0 1.9e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656114|ref|YP_003536011.1| - 1.3e-13 51.4 3.2 1.7e-08 34.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|292656114|ref|YP_003536011.1| - 2.5e-06 28.1 0.0 5.2e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|292656114|ref|YP_003536011.1| - 0.0028 18.2 0.0 0.0039 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|292656114|ref|YP_003536011.1| - 0.0042 16.8 0.0 2.3 7.8 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain NTPase_1 PF03266.15 gi|292656114|ref|YP_003536011.1| - 0.0088 16.0 0.2 1.5 8.7 0.0 3.0 3 0 0 3 3 3 1 NTPase AAA_30 PF13604.6 gi|292656114|ref|YP_003536011.1| - 0.0094 15.7 0.0 0.029 14.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292656114|ref|YP_003536011.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DLIC PF05783.11 gi|292656114|ref|YP_003536011.1| - 0.077 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RsgA_GTPase PF03193.16 gi|292656114|ref|YP_003536011.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|292656114|ref|YP_003536011.1| - 0.21 11.0 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|292656114|ref|YP_003536011.1| - 0.4 10.8 1.1 0.8 9.8 0.2 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC2_membrane PF01061.24 gi|292656115|ref|YP_003536012.1| - 4.5e-31 107.9 18.1 5.8e-31 107.6 18.1 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|292656115|ref|YP_003536012.1| - 5.3e-05 22.5 17.7 7e-05 22.1 17.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Peptidase_S49 PF01343.18 gi|292656116|ref|YP_003536013.1| - 8.7e-17 61.5 2.7 1.9e-07 31.2 0.8 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|292656116|ref|YP_003536013.1| - 0.00046 20.1 0.4 0.0011 19.0 0.1 1.7 2 0 0 2 2 2 1 Clp protease STAS PF01740.21 gi|292656116|ref|YP_003536013.1| - 0.014 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 STAS domain OKR_DC_1_N PF03709.15 gi|292656116|ref|YP_003536013.1| - 0.11 12.7 0.0 0.28 11.5 0.0 1.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain ABC_transp_aux PF09822.9 gi|292656117|ref|YP_003536014.1| - 0.0032 17.0 0.0 0.0059 16.1 0.0 1.4 1 1 0 1 1 1 1 ABC-type uncharacterized transport system preATP-grasp_3 PF18301.1 gi|292656117|ref|YP_003536014.1| - 0.049 13.9 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 pre ATP-grasp 3 domain Methyltrn_RNA_2 PF04013.12 gi|292656118|ref|YP_003536015.1| - 2.6e-66 223.1 0.0 2.9e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Peripla_BP_2 PF01497.18 gi|292656119|ref|YP_003536016.1| - 2e-19 70.1 0.1 2.6e-19 69.8 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|292656119|ref|YP_003536016.1| - 0.00093 18.9 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DHR-2 PF06920.13 gi|292656119|ref|YP_003536016.1| - 0.14 10.7 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 Dock homology region 2 FF PF01846.19 gi|292656119|ref|YP_003536016.1| - 0.25 11.6 1.3 0.76 10.0 0.0 2.4 2 1 0 2 2 2 0 FF domain ORMDL PF04061.14 gi|292656119|ref|YP_003536016.1| - 0.26 11.1 0.1 0.57 10.0 0.1 1.5 2 0 0 2 2 2 0 ORMDL family CSD PF00313.22 gi|292656120|ref|YP_003536017.1| - 4.9e-19 67.9 0.0 5.4e-19 67.8 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|292656120|ref|YP_003536017.1| - 0.045 13.4 2.8 0.063 13.0 2.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|292656120|ref|YP_003536017.1| - 0.091 12.6 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|292656120|ref|YP_003536017.1| - 0.099 12.6 0.3 0.13 12.2 0.3 1.3 1 1 0 1 1 1 0 S1-like Methyltransf_25 PF13649.6 gi|292656121|ref|YP_003536018.1| - 1.6e-13 51.2 0.0 2.6e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292656121|ref|YP_003536018.1| - 2.4e-12 47.0 0.0 3.5e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292656121|ref|YP_003536018.1| - 2.3e-10 40.9 0.0 3.7e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292656121|ref|YP_003536018.1| - 9.4e-08 32.7 0.0 1.4e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292656121|ref|YP_003536018.1| - 2.9e-06 27.2 0.0 4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|292656121|ref|YP_003536018.1| - 0.0001 21.9 0.0 0.00014 21.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_17 PF12692.7 gi|292656121|ref|YP_003536018.1| - 0.065 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase DUF938 PF06080.12 gi|292656121|ref|YP_003536018.1| - 0.077 12.7 0.0 0.11 12.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) DUF5086 PF16985.5 gi|292656121|ref|YP_003536018.1| - 0.087 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5086) YhhN PF07947.14 gi|292656122|ref|YP_003536019.1| - 2.4 7.7 13.2 0.21 11.2 3.7 2.2 1 1 1 2 2 2 0 YhhN family DUF3053 PF11254.8 gi|292656123|ref|YP_003536020.1| - 0.0067 16.0 0.0 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3053) FliD_C PF07195.12 gi|292656123|ref|YP_003536020.1| - 0.0081 15.6 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus NPV_P10 PF05531.12 gi|292656123|ref|YP_003536020.1| - 0.14 12.7 0.5 1.9 9.0 0.0 2.6 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein NUDIX PF00293.28 gi|292656124|ref|YP_003536021.1| - 8.2e-11 42.1 0.3 1.1e-10 41.7 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain CPBP PF02517.16 gi|292656125|ref|YP_003536022.1| - 8.5e-16 58.1 1.1 8.5e-16 58.1 1.1 2.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease CitMHS PF03600.16 gi|292656126|ref|YP_003536023.1| - 6e-65 219.4 5.8 6e-65 219.4 5.8 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|292656126|ref|YP_003536023.1| - 3.7e-23 82.3 41.3 4e-16 59.1 18.0 3.2 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|292656126|ref|YP_003536023.1| - 1.7e-18 66.2 2.2 2.6e-10 40.0 0.2 2.7 2 0 0 2 2 2 2 TrkA-C domain PARP_regulatory PF01358.18 gi|292656126|ref|YP_003536023.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Poly A polymerase regulatory subunit MCPsignal PF00015.21 gi|292656127|ref|YP_003536024.1| - 3.5e-41 140.9 59.7 6.1e-41 140.1 25.6 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|292656127|ref|YP_003536024.1| - 0.0014 18.9 43.7 0.36 11.1 4.4 6.5 3 3 2 5 5 5 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|292656127|ref|YP_003536024.1| - 0.0032 17.8 0.8 0.0032 17.8 0.8 4.7 4 2 1 5 5 4 1 HAMP domain DUF5084 PF16894.5 gi|292656127|ref|YP_003536024.1| - 0.014 15.8 0.8 0.028 14.9 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5084) ZapB PF06005.12 gi|292656127|ref|YP_003536024.1| - 0.014 15.8 0.4 0.014 15.8 0.4 5.2 2 1 4 6 6 6 0 Cell division protein ZapB RPW8 PF05659.11 gi|292656127|ref|YP_003536024.1| - 0.025 14.3 16.7 5.6 6.7 0.4 5.8 4 2 3 7 7 7 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 GAS PF13851.6 gi|292656127|ref|YP_003536024.1| - 0.068 12.5 28.0 0.037 13.4 5.9 3.0 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|292656127|ref|YP_003536024.1| - 0.15 12.1 43.8 0.5 10.4 4.1 4.6 2 2 2 4 4 4 0 Laminin Domain II Mod_r PF07200.13 gi|292656127|ref|YP_003536024.1| - 0.16 12.0 35.0 0.15 12.2 5.5 4.8 3 2 2 5 5 5 0 Modifier of rudimentary (Mod(r)) protein BLOC1_2 PF10046.9 gi|292656127|ref|YP_003536024.1| - 0.17 12.2 38.9 0.065 13.5 3.1 6.1 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AIP3 PF03915.13 gi|292656127|ref|YP_003536024.1| - 0.18 10.9 34.7 0.9 8.6 12.9 2.3 1 1 1 2 2 2 0 Actin interacting protein 3 DUF1129 PF06570.11 gi|292656127|ref|YP_003536024.1| - 0.19 11.2 1.9 0.44 10.0 1.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2203 PF09969.9 gi|292656127|ref|YP_003536024.1| - 0.2 12.4 34.1 0.38 11.5 3.6 5.0 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|292656127|ref|YP_003536024.1| - 0.44 8.4 26.1 0.023 12.7 6.8 2.2 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Serine_rich PF08824.10 gi|292656127|ref|YP_003536024.1| - 1.4 8.9 20.8 0.2 11.7 5.5 3.0 1 1 1 2 2 2 0 Serine rich protein interaction domain DUF1664 PF07889.12 gi|292656127|ref|YP_003536024.1| - 1.7 8.7 38.4 0.91 9.6 3.0 4.8 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) DUF4201 PF13870.6 gi|292656127|ref|YP_003536024.1| - 1.8 8.3 16.7 0.21 11.3 1.3 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4201) WXG100 PF06013.12 gi|292656127|ref|YP_003536024.1| - 3.7 7.8 37.4 0.87 9.9 0.7 6.9 3 2 4 7 7 7 0 Proteins of 100 residues with WXG TPR_MLP1_2 PF07926.12 gi|292656127|ref|YP_003536024.1| - 4.7 7.3 54.1 1.2 9.2 15.7 4.3 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein 7TMR-DISM_7TM PF07695.11 gi|292656128|ref|YP_003536025.1| - 0.0073 16.2 3.0 0.0089 15.9 3.0 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling YhhN PF07947.14 gi|292656128|ref|YP_003536025.1| - 0.062 12.9 3.1 0.077 12.6 3.1 1.1 1 0 0 1 1 1 0 YhhN family GPI2 PF06432.11 gi|292656128|ref|YP_003536025.1| - 0.17 11.3 0.4 0.19 11.1 0.4 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase TGT PF01702.18 gi|292656129|ref|YP_003536026.1| - 3.1e-78 263.4 0.0 4.5e-78 262.8 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HTH_5 PF01022.20 gi|292656130|ref|YP_003536027.1| - 2.7e-10 40.0 0.0 3.3e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292656130|ref|YP_003536027.1| - 7.1e-07 29.2 0.0 1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|292656130|ref|YP_003536027.1| - 5.8e-05 23.0 0.0 8.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|292656130|ref|YP_003536027.1| - 0.00045 19.7 0.0 0.0011 18.4 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|292656130|ref|YP_003536027.1| - 0.00046 20.0 0.0 0.00071 19.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|292656130|ref|YP_003536027.1| - 0.021 15.1 0.0 0.046 14.1 0.0 1.6 1 1 0 1 1 1 0 Penicillinase repressor Phage_rep_org_N PF09681.10 gi|292656130|ref|YP_003536027.1| - 0.047 13.6 0.0 0.047 13.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR_2 PF12802.7 gi|292656130|ref|YP_003536027.1| - 0.052 13.4 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|292656130|ref|YP_003536027.1| - 0.066 13.1 0.0 0.08 12.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DprA_WH PF17782.1 gi|292656130|ref|YP_003536027.1| - 0.093 12.9 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 DprA winged helix domain Rio2_N PF09202.11 gi|292656130|ref|YP_003536027.1| - 0.094 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal HTH_12 PF08461.10 gi|292656130|ref|YP_003536027.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Hexapep PF00132.24 gi|292656132|ref|YP_003536029.1| - 4.8e-12 45.1 4.5 8e-07 28.6 1.6 2.7 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|292656132|ref|YP_003536029.1| - 3.2e-05 24.3 0.0 5.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|292656132|ref|YP_003536029.1| - 0.0069 16.1 1.3 0.0069 16.1 1.3 3.0 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase PAS_7 PF12860.7 gi|292656134|ref|YP_003536031.1| - 1.6e-12 47.6 3.6 0.018 15.2 0.0 5.4 5 0 0 5 5 5 5 PAS fold PrcB_C PF14343.6 gi|292656134|ref|YP_003536031.1| - 5.1e-05 23.3 5.3 0.16 12.1 0.1 5.1 5 0 0 5 5 5 1 PrcB C-terminal PGF-CTERM PF18204.1 gi|292656134|ref|YP_003536031.1| - 0.00017 21.4 10.1 0.0004 20.2 10.1 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF4369 PF14289.6 gi|292656134|ref|YP_003536031.1| - 0.0014 19.1 5.7 2.8 8.5 0.1 5.3 3 2 2 5 5 5 2 Domain of unknown function (DUF4369) Glycoprotein PF03409.15 gi|292656134|ref|YP_003536031.1| - 0.1 11.4 5.7 0.27 10.0 5.7 1.7 1 0 0 1 1 1 0 Transmembrane glycoprotein DUF2586 PF10758.9 gi|292656134|ref|YP_003536031.1| - 9.2 5.3 7.2 34 3.5 0.1 4.1 5 0 0 5 5 5 0 Protein of unknown function (DUF2586) Pyridox_ox_2 PF12900.7 gi|292656135|ref|YP_003536032.1| - 0.0008 19.4 0.3 0.0011 19.0 0.3 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase APH PF01636.23 gi|292656135|ref|YP_003536032.1| - 0.025 14.5 1.0 0.031 14.2 1.0 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family DUF5591 PF17884.1 gi|292656136|ref|YP_003536033.1| - 1.4e-59 200.4 0.2 2.1e-59 199.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|292656136|ref|YP_003536033.1| - 4.2e-20 71.6 0.0 1.9e-19 69.6 0.0 2.2 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|292656136|ref|YP_003536033.1| - 7.4e-13 48.3 0.3 1.7e-12 47.1 0.3 1.5 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|292656136|ref|YP_003536033.1| - 1.8e-10 40.6 0.0 1.4e-09 37.5 0.0 2.3 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase HTH_45 PF14947.6 gi|292656138|ref|YP_003536035.1| - 0.0004 20.3 0.0 0.00055 19.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|292656138|ref|YP_003536035.1| - 0.037 13.6 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|292656138|ref|YP_003536035.1| - 0.047 13.7 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Response_reg PF00072.24 gi|292656140|ref|YP_003536037.1| - 5e-05 23.4 0.0 8.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Tubulin PF00091.25 gi|292656141|ref|YP_003536038.1| - 2.1e-26 93.3 0.0 3.1e-26 92.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|292656141|ref|YP_003536038.1| - 0.00078 18.7 0.1 0.0019 17.4 0.1 1.6 1 1 1 2 2 2 1 Tubulin like zf-FPG_IleRS PF06827.14 gi|292656142|ref|YP_003536039.1| - 4.8e-05 23.1 2.6 9.1e-05 22.2 2.6 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|292656142|ref|YP_003536039.1| - 5.4e-05 22.4 1.8 0.00012 21.4 1.8 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF2387 PF09526.10 gi|292656142|ref|YP_003536039.1| - 0.068 13.3 0.2 0.15 12.3 0.2 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.9 gi|292656142|ref|YP_003536039.1| - 0.12 12.4 4.8 0.71 10.0 4.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|292656142|ref|YP_003536039.1| - 0.18 11.8 0.5 0.27 11.2 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbons FtsA PF14450.6 gi|292656143|ref|YP_003536040.1| - 4.4e-05 23.8 0.0 0.00033 21.0 0.0 2.0 2 0 0 2 2 2 1 Cell division protein FtsA Actin PF00022.19 gi|292656143|ref|YP_003536040.1| - 0.0059 15.3 0.0 0.29 9.7 0.0 2.2 2 0 0 2 2 2 2 Actin Glyco_transf_52 PF07922.11 gi|292656143|ref|YP_003536040.1| - 0.095 12.0 0.1 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 52 DUF3484 PF11983.8 gi|292656144|ref|YP_003536041.1| - 0.11 13.6 0.0 0.22 12.7 0.0 1.5 1 0 0 1 1 1 0 Membrane-attachment and polymerisation-promoting switch Ribosomal_60s PF00428.19 gi|292656144|ref|YP_003536041.1| - 5.7 7.6 13.4 0.98 10.0 5.1 2.7 2 0 0 2 2 2 0 60s Acidic ribosomal protein Yip1 PF04893.17 gi|292656144|ref|YP_003536041.1| - 6.1 6.5 15.6 22 4.7 15.6 1.8 1 1 0 1 1 1 0 Yip1 domain Pentapeptide_3 PF13576.6 gi|292656145|ref|YP_003536042.1| - 7.5e-25 86.8 28.6 1.7e-07 31.3 2.3 7.9 6 2 3 9 9 9 7 Pentapeptide repeats (9 copies) Bactofilin PF04519.13 gi|292656145|ref|YP_003536042.1| - 0.027 14.7 1.6 2.7 8.3 0.6 3.7 3 2 0 3 3 3 0 Polymer-forming cytoskeletal EPTP PF03736.17 gi|292656145|ref|YP_003536042.1| - 0.034 14.1 0.0 0.25 11.4 0.0 2.5 3 0 0 3 3 3 0 EPTP domain DUF4926 PF16277.5 gi|292656146|ref|YP_003536043.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) hemP PF10636.9 gi|292656146|ref|YP_003536043.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Hemin uptake protein hemP PRC PF05239.16 gi|292656147|ref|YP_003536044.1| - 1.7e-12 47.2 0.0 1.8e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF502 PF04367.13 gi|292656148|ref|YP_003536045.1| - 2.9e-22 78.6 0.4 4.8e-22 77.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF502) TPPK_C PF12555.8 gi|292656148|ref|YP_003536045.1| - 0.046 13.8 2.1 2 8.5 0.1 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal HTH_20 PF12840.7 gi|292656152|ref|YP_003536049.1| - 0.1 12.7 2.5 1.2 9.2 1.1 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain TrmB PF01978.19 gi|292656152|ref|YP_003536049.1| - 0.15 12.0 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PAS_9 PF13426.7 gi|292656153|ref|YP_003536050.1| - 4.4e-23 81.5 0.0 2.1e-13 50.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 gi|292656153|ref|YP_003536050.1| - 3.8e-21 75.3 0.0 7.1e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|292656153|ref|YP_003536050.1| - 3.6e-19 69.1 0.4 9.5e-11 41.9 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|292656153|ref|YP_003536050.1| - 7.1e-19 67.9 0.0 4.6e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|292656153|ref|YP_003536050.1| - 1.1e-11 44.9 0.0 9.9e-09 35.4 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|292656153|ref|YP_003536050.1| - 3e-08 33.5 0.0 0.00014 21.8 0.0 2.5 2 0 0 2 2 2 2 PAS domain ABA_GPCR PF12430.8 gi|292656154|ref|YP_003536051.1| - 0.17 11.6 0.1 0.19 11.5 0.1 1.1 1 0 0 1 1 1 0 Abscisic acid G-protein coupled receptor HR_lesion PF05514.11 gi|292656155|ref|YP_003536052.1| - 4.1e-05 23.8 0.0 0.0027 17.9 0.1 2.0 1 1 1 2 2 2 2 HR-like lesion-inducing DoxX PF07681.12 gi|292656155|ref|YP_003536052.1| - 0.00013 22.5 1.2 0.00021 21.8 1.2 1.3 1 0 0 1 1 1 1 DoxX PAS_9 PF13426.7 gi|292656157|ref|YP_003536054.1| - 4.5e-48 161.8 0.0 7.6e-23 80.8 0.1 3.8 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|292656157|ref|YP_003536054.1| - 6e-34 116.4 0.1 1e-12 48.1 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|292656157|ref|YP_003536054.1| - 5.5e-31 107.1 4.3 2.4e-09 37.4 0.1 4.3 4 1 1 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|292656157|ref|YP_003536054.1| - 2.9e-24 84.6 0.1 1.4e-08 34.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|292656157|ref|YP_003536054.1| - 5.4e-16 58.7 0.0 2.2e-08 34.3 0.0 4.1 4 1 0 4 4 4 3 PAS fold HisKA PF00512.25 gi|292656157|ref|YP_003536054.1| - 6.9e-12 45.2 1.9 1.9e-11 43.8 0.5 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|292656157|ref|YP_003536054.1| - 2e-11 44.4 0.0 4.9e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|292656157|ref|YP_003536054.1| - 0.00048 20.3 0.0 0.0025 18.0 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS_12 PF18095.1 gi|292656157|ref|YP_003536054.1| - 0.039 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain HATPase_c_2 PF13581.6 gi|292656157|ref|YP_003536054.1| - 0.073 13.0 1.4 0.53 10.3 0.1 2.8 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain AsnC_trans_reg PF01037.21 gi|292656158|ref|YP_003536055.1| - 1.4e-12 47.4 0.1 2.5e-12 46.6 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|292656158|ref|YP_003536055.1| - 7.2e-12 44.7 1.4 7.9e-12 44.5 0.3 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292656158|ref|YP_003536055.1| - 7.2e-10 38.6 0.3 2.7e-09 36.7 0.1 2.0 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|292656158|ref|YP_003536055.1| - 8.5e-08 31.9 2.1 8.9e-08 31.8 0.7 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|292656158|ref|YP_003536055.1| - 3.2e-07 30.3 0.6 6.6e-07 29.3 0.1 1.8 3 0 0 3 3 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292656158|ref|YP_003536055.1| - 5.1e-07 29.5 0.0 1.5e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|292656158|ref|YP_003536055.1| - 2.6e-05 23.8 0.1 5.4e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|292656158|ref|YP_003536055.1| - 9.1e-05 22.3 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|292656158|ref|YP_003536055.1| - 9.4e-05 22.5 0.0 0.00018 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292656158|ref|YP_003536055.1| - 0.00017 21.5 0.0 0.00033 20.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|292656158|ref|YP_003536055.1| - 0.00022 21.1 0.0 0.00044 20.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|292656158|ref|YP_003536055.1| - 0.0003 20.5 0.1 0.00079 19.2 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|292656158|ref|YP_003536055.1| - 0.00031 20.6 0.0 0.00067 19.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|292656158|ref|YP_003536055.1| - 0.00042 20.0 0.0 0.00089 19.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_DeoR PF08220.12 gi|292656158|ref|YP_003536055.1| - 0.00062 19.5 0.2 0.0014 18.4 0.1 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|292656158|ref|YP_003536055.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|292656158|ref|YP_003536055.1| - 0.0037 16.8 0.0 0.0075 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|292656158|ref|YP_003536055.1| - 0.0056 17.2 0.0 0.014 16.0 0.0 1.6 2 0 0 2 2 1 1 Mga helix-turn-helix domain Fe_dep_repress PF01325.19 gi|292656158|ref|YP_003536055.1| - 0.0071 16.5 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|292656158|ref|YP_003536055.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|292656158|ref|YP_003536055.1| - 0.014 14.9 0.1 0.027 14.0 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_7 PF02796.15 gi|292656158|ref|YP_003536055.1| - 0.021 14.9 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.6 gi|292656158|ref|YP_003536055.1| - 0.03 13.7 0.0 0.074 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|292656158|ref|YP_003536055.1| - 0.037 14.0 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|292656158|ref|YP_003536055.1| - 0.041 14.2 0.0 0.2 12.0 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.6 gi|292656158|ref|YP_003536055.1| - 0.05 13.6 0.0 0.082 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|292656158|ref|YP_003536055.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|292656158|ref|YP_003536055.1| - 0.073 12.6 0.2 0.16 11.6 0.0 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain RPA_C PF08784.11 gi|292656158|ref|YP_003536055.1| - 0.099 13.3 0.2 0.69 10.6 0.0 2.1 2 1 0 2 2 2 0 Replication protein A C terminal HTH_40 PF14493.6 gi|292656158|ref|YP_003536055.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|292656158|ref|YP_003536055.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|292656158|ref|YP_003536055.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RepL PF05732.11 gi|292656158|ref|YP_003536055.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HxlR PF01638.17 gi|292656158|ref|YP_003536055.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Mga PF08280.11 gi|292656158|ref|YP_003536055.1| - 0.19 11.8 0.1 0.4 10.8 0.1 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Bmp PF02608.14 gi|292656159|ref|YP_003536056.1| - 1.2e-41 142.7 6.0 2.6e-41 141.6 6.0 1.5 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|292656159|ref|YP_003536056.1| - 0.0026 17.5 0.1 0.0026 17.5 0.1 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|292656160|ref|YP_003536057.1| - 4.8e-44 150.2 0.0 1.6e-26 93.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|292656160|ref|YP_003536057.1| - 7.2e-10 39.2 0.2 0.0012 18.8 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|292656160|ref|YP_003536057.1| - 0.00031 20.6 0.0 0.064 13.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|292656160|ref|YP_003536057.1| - 0.00065 19.4 0.1 0.016 14.9 0.0 2.6 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|292656160|ref|YP_003536057.1| - 0.0064 16.1 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|292656160|ref|YP_003536057.1| - 0.01 15.7 0.4 0.12 12.3 0.0 2.5 3 0 0 3 3 3 0 RsgA GTPase AAA_23 PF13476.6 gi|292656160|ref|YP_003536057.1| - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|292656160|ref|YP_003536057.1| - 0.036 14.4 0.2 0.14 12.5 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|292656160|ref|YP_003536057.1| - 0.064 13.6 0.0 0.17 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|292656160|ref|YP_003536057.1| - 0.098 12.1 0.2 0.61 9.5 0.0 2.2 2 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|292656160|ref|YP_003536057.1| - 0.11 12.6 0.1 0.47 10.5 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|292656160|ref|YP_003536057.1| - 0.12 11.8 0.1 1.3 8.5 0.0 2.4 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DLIC PF05783.11 gi|292656160|ref|YP_003536057.1| - 0.19 10.5 0.0 0.33 9.7 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) BPD_transp_2 PF02653.16 gi|292656161|ref|YP_003536058.1| - 8.6e-44 149.7 29.1 8.6e-44 149.7 29.1 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|292656162|ref|YP_003536059.1| - 2.2e-33 115.6 39.1 2.2e-33 115.6 39.1 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Secretin PF00263.21 gi|292656162|ref|YP_003536059.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial type II and III secretion system protein DAD PF02109.16 gi|292656162|ref|YP_003536059.1| - 5.4 7.4 5.8 0.52 10.6 0.6 2.0 2 0 0 2 2 2 0 DAD family Regulator_TrmB PF11495.8 gi|292656163|ref|YP_003536060.1| - 3.6e-52 176.9 0.0 4.4e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|292656163|ref|YP_003536060.1| - 1.1e-17 63.7 0.0 2.2e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292656163|ref|YP_003536060.1| - 0.00038 20.3 0.2 0.002 18.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|292656163|ref|YP_003536060.1| - 0.0022 17.8 0.0 0.01 15.6 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|292656163|ref|YP_003536060.1| - 0.0065 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|292656163|ref|YP_003536060.1| - 0.012 15.9 0.0 0.025 14.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|292656163|ref|YP_003536060.1| - 0.018 15.0 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|292656163|ref|YP_003536060.1| - 0.019 14.9 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|292656163|ref|YP_003536060.1| - 0.022 14.7 0.1 0.37 10.8 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|292656163|ref|YP_003536060.1| - 0.037 13.6 0.0 2.8 7.6 0.0 3.2 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|292656163|ref|YP_003536060.1| - 0.14 12.3 0.0 0.55 10.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain SHOCT PF09851.9 gi|292656165|ref|YP_003536062.1| - 1.2e-06 28.0 0.1 1.8e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|292656165|ref|YP_003536062.1| - 0.0026 17.8 0.3 0.0026 17.8 0.3 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) DUF4381 PF14316.6 gi|292656165|ref|YP_003536062.1| - 0.0093 16.2 0.1 0.012 15.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) GvpG PF05120.12 gi|292656165|ref|YP_003536062.1| - 0.0098 15.9 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Gas vesicle protein G CdvA PF18822.1 gi|292656165|ref|YP_003536062.1| - 0.012 15.4 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain VbhA PF18495.1 gi|292656165|ref|YP_003536062.1| - 0.044 13.6 1.1 0.044 13.6 1.1 1.5 2 0 0 2 2 2 0 Antitoxin VbhA Peripla_BP_2 PF01497.18 gi|292656167|ref|YP_003536064.1| - 3.1e-09 36.7 0.0 4.9e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|292656167|ref|YP_003536064.1| - 0.00094 18.9 1.2 0.002 17.9 1.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF5336 PF17270.2 gi|292656168|ref|YP_003536065.1| - 0.0034 17.0 10.7 0.0034 17.0 10.7 1.8 1 1 0 2 2 2 1 Family of unknown function (DUF5336) Epimerase PF01370.21 gi|292656169|ref|YP_003536066.1| - 3.1e-44 151.3 0.0 3.7e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292656169|ref|YP_003536066.1| - 1.4e-41 143.0 0.2 6.4e-41 140.8 0.2 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|292656169|ref|YP_003536066.1| - 7e-13 48.3 0.0 8.7e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|292656169|ref|YP_003536066.1| - 3.6e-10 39.3 0.0 6.1e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|292656169|ref|YP_003536066.1| - 9.3e-10 38.1 0.0 1.3e-06 27.8 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|292656169|ref|YP_003536066.1| - 1.7e-05 24.1 0.0 0.0059 15.8 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|292656169|ref|YP_003536066.1| - 0.029 13.8 0.1 0.64 9.4 0.0 2.5 1 1 0 2 2 2 0 short chain dehydrogenase KR PF08659.10 gi|292656169|ref|YP_003536066.1| - 0.19 11.6 0.0 0.6 10.0 0.0 1.7 2 0 0 2 2 2 0 KR domain DAD PF02109.16 gi|292656170|ref|YP_003536067.1| - 0.015 15.6 0.3 0.018 15.3 0.3 1.1 1 0 0 1 1 1 0 DAD family CCB1 PF12046.8 gi|292656170|ref|YP_003536067.1| - 0.13 11.6 0.7 0.16 11.3 0.7 1.1 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Cdc6_C PF09079.11 gi|292656171|ref|YP_003536068.1| - 1.8e-19 69.5 0.0 3.7e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|292656171|ref|YP_003536068.1| - 4.6e-12 46.4 0.0 1.4e-11 44.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292656171|ref|YP_003536068.1| - 2e-11 44.6 0.7 2.2e-10 41.2 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|292656171|ref|YP_003536068.1| - 0.0013 19.1 0.0 0.0031 17.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.6 gi|292656171|ref|YP_003536068.1| - 0.0018 17.1 0.0 0.95 8.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain TniB PF05621.11 gi|292656171|ref|YP_003536068.1| - 0.0024 17.3 0.0 0.0038 16.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|292656171|ref|YP_003536068.1| - 0.0039 16.4 0.0 0.0061 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|292656171|ref|YP_003536068.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|292656171|ref|YP_003536068.1| - 0.033 14.1 0.0 0.081 12.8 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Borrelia_orfA PF02414.15 gi|292656171|ref|YP_003536068.1| - 0.051 13.2 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 Borrelia ORF-A NB-ARC PF00931.22 gi|292656171|ref|YP_003536068.1| - 0.051 12.8 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|292656171|ref|YP_003536068.1| - 0.055 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|292656171|ref|YP_003536068.1| - 0.057 14.0 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|292656171|ref|YP_003536068.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|292656171|ref|YP_003536068.1| - 0.11 12.5 0.0 2.1 8.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|292656171|ref|YP_003536068.1| - 0.14 12.1 0.0 0.91 9.4 0.0 2.2 3 0 0 3 3 3 0 RsgA GTPase Glycos_transf_1 PF00534.20 gi|292656172|ref|YP_003536069.1| - 1e-27 96.7 0.0 1.3e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|292656172|ref|YP_003536069.1| - 3.9e-24 85.6 0.0 5.4e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292656172|ref|YP_003536069.1| - 0.035 14.1 0.1 0.064 13.3 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 LAGLIDADG_2 PF03161.13 gi|292656173|ref|YP_003536070.1| - 1.2e-11 44.9 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 LAGLIDADG DNA endonuclease family HTH_10 PF04967.12 gi|292656173|ref|YP_003536070.1| - 3.1e-05 23.7 0.3 0.33 10.8 0.0 3.0 3 0 0 3 3 3 2 HTH DNA binding domain HTH_7 PF02796.15 gi|292656173|ref|YP_003536070.1| - 6.8e-05 22.9 0.0 0.00051 20.1 0.0 2.3 2 1 1 3 3 3 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|292656173|ref|YP_003536070.1| - 0.00013 21.6 0.4 0.0043 16.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|292656173|ref|YP_003536070.1| - 0.00014 21.3 3.3 0.0039 16.7 0.1 2.9 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|292656173|ref|YP_003536070.1| - 0.0002 21.1 0.1 0.0013 18.5 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|292656173|ref|YP_003536070.1| - 0.0011 18.8 0.4 0.014 15.3 0.0 2.8 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292656173|ref|YP_003536070.1| - 0.0016 18.0 0.0 0.013 15.0 0.0 2.5 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|292656173|ref|YP_003536070.1| - 0.0022 17.7 0.1 0.0074 16.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|292656173|ref|YP_003536070.1| - 0.0053 16.7 0.0 0.12 12.2 0.0 2.3 2 0 0 2 2 2 1 Phage antitermination protein Q HTH_11 PF08279.12 gi|292656173|ref|YP_003536070.1| - 0.0055 16.6 0.2 1.1 9.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|292656173|ref|YP_003536070.1| - 0.012 15.0 0.0 0.059 12.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 gi|292656173|ref|YP_003536070.1| - 0.014 15.2 0.0 0.042 13.6 0.0 1.9 2 0 0 2 2 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|292656173|ref|YP_003536070.1| - 0.015 15.4 0.0 0.075 13.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|292656173|ref|YP_003536070.1| - 0.016 14.9 0.3 1.2 9.0 0.1 2.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_psq PF05225.16 gi|292656173|ref|YP_003536070.1| - 0.021 14.6 0.0 0.058 13.1 0.0 1.8 1 0 0 1 1 1 0 helix-turn-helix, Psq domain GntR PF00392.21 gi|292656173|ref|YP_003536070.1| - 0.021 14.5 0.0 0.073 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family UPF0122 PF04297.14 gi|292656173|ref|YP_003536070.1| - 0.027 14.7 0.1 1.4 9.2 0.0 2.4 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like GcrA PF07750.11 gi|292656173|ref|YP_003536070.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_20 PF12840.7 gi|292656173|ref|YP_003536070.1| - 0.064 13.3 0.0 0.93 9.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|292656173|ref|YP_003536070.1| - 0.072 12.6 0.0 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family SpoIIID PF12116.8 gi|292656173|ref|YP_003536070.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D Sigma70_ECF PF07638.11 gi|292656173|ref|YP_003536070.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 ECF sigma factor MarR_2 PF12802.7 gi|292656174|ref|YP_003536071.1| - 0.067 13.1 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|292656174|ref|YP_003536071.1| - 0.075 13.5 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sulfatase PF00884.23 gi|292656175|ref|YP_003536072.1| - 4.3e-19 69.0 0.0 1.8e-14 53.9 0.0 2.2 2 0 0 2 2 2 2 Sulfatase DUF229 PF02995.17 gi|292656175|ref|YP_003536072.1| - 0.0026 16.4 0.0 0.003 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Phosphodiest PF01663.22 gi|292656175|ref|YP_003536072.1| - 0.0072 16.0 0.5 0.59 9.7 0.1 2.2 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|292656176|ref|YP_003536073.1| - 0.01 15.2 0.1 0.013 14.9 0.1 1.2 1 0 0 1 1 1 0 Sulfatase PglZ PF08665.12 gi|292656176|ref|YP_003536073.1| - 0.018 15.1 0.3 0.058 13.5 0.2 1.8 2 0 0 2 2 2 0 PglZ domain Glycos_transf_1 PF00534.20 gi|292656177|ref|YP_003536074.1| - 1.7e-28 99.3 0.0 5e-28 97.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|292656177|ref|YP_003536074.1| - 2e-24 86.5 0.0 5.5e-24 85.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292656177|ref|YP_003536074.1| - 8.4e-14 51.9 0.0 1.1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|292656177|ref|YP_003536074.1| - 0.0055 17.1 0.0 0.009 16.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.26 gi|292656178|ref|YP_003536075.1| - 4.3e-13 49.4 0.0 1e-12 48.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292656178|ref|YP_003536075.1| - 0.0023 17.8 0.0 0.018 15.0 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|292656178|ref|YP_003536075.1| - 0.068 13.1 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family group 2 DDE_Tnp_1 PF01609.21 gi|292656179|ref|YP_003536076.1| - 1.6e-26 93.3 0.0 2.3e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292656179|ref|YP_003536076.1| - 0.0061 15.8 0.1 0.014 14.6 0.1 1.5 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 Glyco_trans_1_4 PF13692.6 gi|292656181|ref|YP_003536078.1| - 5.8e-20 72.1 0.0 8.7e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|292656181|ref|YP_003536078.1| - 3.7e-18 65.6 0.0 5.8e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|292656181|ref|YP_003536078.1| - 4.8e-05 23.4 0.0 8.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|292656181|ref|YP_003536078.1| - 0.00029 21.3 0.0 0.00059 20.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|292656181|ref|YP_003536078.1| - 0.021 14.9 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Polysacc_synt_C PF14667.6 gi|292656183|ref|YP_003536080.1| - 2.8e-25 89.0 24.3 2.8e-25 89.0 24.3 3.4 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|292656183|ref|YP_003536080.1| - 4.3e-22 78.7 12.8 4.3e-22 78.7 12.8 2.4 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|292656183|ref|YP_003536080.1| - 3.8e-17 62.6 17.6 3.8e-17 62.6 17.6 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|292656183|ref|YP_003536080.1| - 1.6e-12 46.8 32.4 3e-12 45.9 32.4 1.5 1 0 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|292656183|ref|YP_003536080.1| - 4.3e-09 36.2 13.0 4.3e-09 36.2 13.0 4.0 3 2 1 4 4 4 1 MatE dTDP_sugar_isom PF00908.17 gi|292656184|ref|YP_003536081.1| - 9.8e-17 61.1 0.0 1.3e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|292656184|ref|YP_003536081.1| - 0.00011 21.9 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|292656184|ref|YP_003536081.1| - 0.016 14.9 0.3 0.2 11.4 0.3 2.1 1 1 0 1 1 1 0 Cupin domain NTP_transferase PF00483.23 gi|292656185|ref|YP_003536082.1| - 1.2e-55 188.9 0.0 1.4e-55 188.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|292656185|ref|YP_003536082.1| - 8.4e-10 39.2 0.0 1.1e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|292656185|ref|YP_003536082.1| - 6.4e-07 28.9 3.8 0.001 18.7 0.3 3.4 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|292656185|ref|YP_003536082.1| - 0.0019 18.0 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|292656185|ref|YP_003536082.1| - 0.016 15.5 1.4 0.04 14.2 1.4 1.7 1 1 0 1 1 1 0 Polymer-forming cytoskeletal Hexapep_2 PF14602.6 gi|292656185|ref|YP_003536082.1| - 0.21 11.4 9.8 2.4 8.0 0.4 4.0 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase RmlD_sub_bind PF04321.17 gi|292656186|ref|YP_003536083.1| - 2.7e-72 243.3 0.0 3.2e-72 243.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|292656186|ref|YP_003536083.1| - 9.6e-27 94.0 0.0 1.3e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|292656186|ref|YP_003536083.1| - 6.8e-16 58.6 0.1 2.1e-15 57.0 0.1 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|292656186|ref|YP_003536083.1| - 1.7e-08 33.8 0.1 4.3e-08 32.5 0.0 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|292656186|ref|YP_003536083.1| - 2.3e-08 33.5 0.0 8.2e-06 25.2 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|292656186|ref|YP_003536083.1| - 7.8e-08 31.8 0.1 1.6e-06 27.5 0.2 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|292656186|ref|YP_003536083.1| - 0.0013 18.7 0.0 0.0031 17.4 0.0 1.7 2 1 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|292656186|ref|YP_003536083.1| - 0.22 10.9 0.2 0.62 9.5 0.2 1.7 1 1 0 1 1 1 0 short chain dehydrogenase GDP_Man_Dehyd PF16363.5 gi|292656187|ref|YP_003536084.1| - 1.5e-80 271.1 0.0 1.7e-80 270.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|292656187|ref|YP_003536084.1| - 1.2e-65 221.4 0.0 1.5e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292656187|ref|YP_003536084.1| - 8.9e-25 87.2 0.0 1.2e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|292656187|ref|YP_003536084.1| - 7.3e-19 68.0 0.0 4.7e-18 65.3 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|292656187|ref|YP_003536084.1| - 7.5e-19 67.9 0.0 8.9e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|292656187|ref|YP_003536084.1| - 5.3e-15 55.3 0.0 3.7e-13 49.2 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|292656187|ref|YP_003536084.1| - 1.4e-10 41.3 0.0 2.2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|292656187|ref|YP_003536084.1| - 2.4e-05 24.0 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|292656187|ref|YP_003536084.1| - 0.00043 19.8 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|292656187|ref|YP_003536084.1| - 0.011 16.0 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|292656187|ref|YP_003536084.1| - 0.032 14.2 0.0 0.33 10.9 0.0 2.3 2 0 0 2 2 2 0 KR domain NAD_binding_3 PF03447.16 gi|292656187|ref|YP_003536084.1| - 0.15 12.7 0.0 0.31 11.7 0.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain NUDIX PF00293.28 gi|292656188|ref|YP_003536085.1| - 1.1e-10 41.6 0.1 1.5e-10 41.3 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Glycos_transf_2 PF00535.26 gi|292656189|ref|YP_003536086.1| - 1.9e-22 79.9 0.0 2.8e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|292656189|ref|YP_003536086.1| - 3.1e-06 27.2 0.0 4e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Pilin_N PF07790.11 gi|292656190|ref|YP_003536087.1| - 1e-24 87.2 3.2 1e-24 87.2 3.2 1.7 1 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF998 PF06197.13 gi|292656193|ref|YP_003536090.1| - 0.00038 20.1 1.1 0.0004 20.0 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) CARDB PF07705.11 gi|292656194|ref|YP_003536091.1| - 1.5e-08 34.8 16.2 0.00076 19.7 0.6 4.0 2 1 0 3 3 3 3 CARDB Transglut_C PF00927.22 gi|292656194|ref|YP_003536091.1| - 0.002 18.2 0.0 0.028 14.5 0.0 2.5 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain DUF1573 PF07610.11 gi|292656194|ref|YP_003536091.1| - 0.11 12.5 2.3 2 8.5 0.3 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1573) Glyco_hydro_36N PF16875.5 gi|292656194|ref|YP_003536091.1| - 0.18 11.4 1.9 0.31 10.6 0.6 2.0 1 1 1 2 2 2 0 Glycosyl hydrolase family 36 N-terminal domain NPCBM_assoc PF10633.9 gi|292656194|ref|YP_003536091.1| - 0.58 10.5 15.3 0.46 10.8 0.6 4.8 5 1 1 6 6 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2892 PF11127.8 gi|292656194|ref|YP_003536091.1| - 4.9 7.3 6.3 1.5 8.9 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) TetR_N PF00440.23 gi|292656195|ref|YP_003536092.1| - 9.1e-13 47.8 0.0 1.6e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|292656195|ref|YP_003536092.1| - 1.9e-09 37.7 0.0 4.2e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_17 PF17922.1 gi|292656195|ref|YP_003536092.1| - 3.3e-07 30.3 0.1 9.2e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|292656195|ref|YP_003536092.1| - 4.6e-05 23.6 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_7 PF02796.15 gi|292656195|ref|YP_003536092.1| - 7.6e-05 22.7 0.1 0.00014 21.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TetR_C_37 PF18665.1 gi|292656195|ref|YP_003536092.1| - 0.00033 21.2 0.1 0.00092 19.8 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|292656195|ref|YP_003536092.1| - 0.00048 20.3 0.0 0.00097 19.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_27 PF17935.1 gi|292656195|ref|YP_003536092.1| - 0.001 19.1 0.1 0.0036 17.3 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|292656195|ref|YP_003536092.1| - 0.0015 18.5 0.0 0.004 17.2 0.0 1.7 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_31 PF17940.1 gi|292656195|ref|YP_003536092.1| - 0.0023 18.1 0.0 0.0066 16.6 0.0 1.8 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_11 PF08279.12 gi|292656195|ref|YP_003536092.1| - 0.0024 17.8 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|292656195|ref|YP_003536092.1| - 0.0039 17.0 0.0 0.0067 16.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|292656195|ref|YP_003536092.1| - 0.0063 16.0 0.0 0.017 14.6 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|292656195|ref|YP_003536092.1| - 0.0064 16.2 0.0 0.0097 15.6 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_CodY PF08222.11 gi|292656195|ref|YP_003536092.1| - 0.0097 15.4 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_3 PF01381.22 gi|292656195|ref|YP_003536092.1| - 0.015 15.3 0.1 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix HTH_19 PF12844.7 gi|292656195|ref|YP_003536092.1| - 0.03 14.3 0.0 0.068 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|292656195|ref|YP_003536092.1| - 0.044 13.6 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 MerR family regulatory protein HTH_38 PF13936.6 gi|292656195|ref|YP_003536092.1| - 0.088 12.6 0.3 0.22 11.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|292656195|ref|YP_003536092.1| - 0.089 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|292656195|ref|YP_003536092.1| - 0.093 12.3 0.2 0.37 10.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|292656195|ref|YP_003536092.1| - 0.12 12.1 0.1 0.39 10.4 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Tubulin PF00091.25 gi|292656196|ref|YP_003536093.1| - 1.2e-15 58.2 0.0 1.7e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain MMPL PF03176.15 gi|292656197|ref|YP_003536094.1| - 2.4e-34 118.7 29.4 1.2e-17 63.9 9.6 2.3 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|292656197|ref|YP_003536094.1| - 1e-10 40.4 24.5 2e-09 36.2 8.6 2.6 2 1 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|292656197|ref|YP_003536094.1| - 1.9e-09 37.6 8.3 5.2e-07 29.6 3.5 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation DUF4157 PF13699.6 gi|292656197|ref|YP_003536094.1| - 1 9.6 4.8 3.8 7.8 0.8 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) CARDB PF07705.11 gi|292656198|ref|YP_003536095.1| - 6.5e-13 48.8 18.5 0.001 19.3 2.8 4.7 5 0 0 5 5 5 4 CARDB NPCBM_assoc PF10633.9 gi|292656198|ref|YP_003536095.1| - 7.4e-12 45.4 16.7 3.1e-05 24.1 0.0 6.7 4 4 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|292656198|ref|YP_003536095.1| - 2.2e-06 27.9 26.1 0.18 12.1 6.8 6.4 3 2 2 5 5 5 3 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|292656198|ref|YP_003536095.1| - 5.8e-05 22.3 0.0 0.13 11.3 0.0 3.0 4 0 0 4 4 4 2 PTHB1 C-terminus DUF4832 PF16116.5 gi|292656198|ref|YP_003536095.1| - 0.0041 17.0 0.8 0.058 13.2 0.1 2.9 3 1 1 4 4 4 1 Domain of unknown function (DUF4832) ASH PF15780.5 gi|292656198|ref|YP_003536095.1| - 0.05 13.8 4.7 4.3 7.6 0.0 4.3 3 1 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin TRAP_alpha PF03896.16 gi|292656198|ref|YP_003536095.1| - 0.075 12.2 0.0 4.2 6.5 0.0 2.4 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit Filamin PF00630.19 gi|292656199|ref|YP_003536096.1| - 0.0078 17.0 0.2 0.26 12.1 0.1 2.7 2 1 0 2 2 2 1 Filamin/ABP280 repeat PGF-CTERM PF18204.1 gi|292656200|ref|YP_003536097.1| - 3.8e-06 26.7 8.4 7.8e-06 25.7 8.4 1.6 1 0 0 1 1 1 1 PGF-CTERM motif DUF4366 PF14283.6 gi|292656200|ref|YP_003536097.1| - 0.02 14.9 1.0 0.02 14.9 1.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4366) TrmB PF01978.19 gi|292656201|ref|YP_003536098.1| - 6.5e-19 67.6 0.0 1.5e-18 66.4 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|292656201|ref|YP_003536098.1| - 0.001 19.1 0.1 0.012 15.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292656201|ref|YP_003536098.1| - 0.0021 17.8 0.1 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292656201|ref|YP_003536098.1| - 0.0032 17.3 0.1 0.0089 15.9 0.1 1.7 1 0 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|292656201|ref|YP_003536098.1| - 0.077 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_9 PF08221.11 gi|292656201|ref|YP_003536098.1| - 0.08 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Penicillinase_R PF03965.16 gi|292656201|ref|YP_003536098.1| - 0.13 12.6 0.0 0.54 10.6 0.0 1.9 1 1 1 2 2 2 0 Penicillinase repressor Big_7 PF17957.1 gi|292656202|ref|YP_003536099.1| - 1.2e-07 32.4 8.3 0.0076 17.0 1.3 4.7 4 0 0 4 4 4 3 Bacterial Ig domain FixG_C PF11614.8 gi|292656203|ref|YP_003536100.1| - 0.011 15.9 0.3 0.38 11.0 0.1 2.5 1 1 1 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase RNA_GG_bind PF10258.9 gi|292656203|ref|YP_003536100.1| - 0.018 15.1 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 PHAX RNA-binding domain LPD28 PF18843.1 gi|292656203|ref|YP_003536100.1| - 0.028 14.0 0.0 0.6 9.8 0.0 2.3 2 1 0 2 2 2 0 Large polyvalent protein associated domain 28 bPH_2 PF03703.14 gi|292656203|ref|YP_003536100.1| - 0.033 14.4 0.7 1.5 9.1 0.1 2.3 2 0 0 2 2 2 0 Bacterial PH domain DUF916 PF06030.12 gi|292656203|ref|YP_003536100.1| - 0.033 14.2 0.0 2 8.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) CARDB PF07705.11 gi|292656203|ref|YP_003536100.1| - 0.071 13.4 2.5 3.3 8.0 0.3 2.1 2 0 0 2 2 2 0 CARDB OrfB_Zn_ribbon PF07282.11 gi|292656204|ref|YP_003536101.1| - 2.5e-18 65.8 1.8 7.4e-18 64.2 1.8 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|292656204|ref|YP_003536101.1| - 1.2e-15 57.7 0.0 3.8e-15 56.2 0.0 1.8 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.7 gi|292656204|ref|YP_003536101.1| - 0.00031 20.7 0.4 0.00092 19.1 0.4 1.8 1 0 0 1 1 1 1 Transposase zinc-ribbon domain C1_2 PF03107.16 gi|292656204|ref|YP_003536101.1| - 0.0059 16.9 1.5 0.014 15.7 1.5 1.6 1 0 0 1 1 1 1 C1 domain DZR PF12773.7 gi|292656204|ref|YP_003536101.1| - 0.11 12.6 2.0 0.28 11.3 2.0 1.7 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|292656204|ref|YP_003536101.1| - 0.19 11.3 3.1 0.54 9.8 3.1 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding bPH_2 PF03703.14 gi|292656206|ref|YP_003536103.1| - 4.5e-06 26.8 0.0 7.2e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF202 PF02656.15 gi|292656206|ref|YP_003536103.1| - 0.0013 19.1 6.2 0.036 14.5 2.4 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF202) CopD PF05425.13 gi|292656206|ref|YP_003536103.1| - 0.041 14.3 1.2 0.077 13.4 1.2 1.5 1 0 0 1 1 1 0 Copper resistance protein D DUF3180 PF11377.8 gi|292656206|ref|YP_003536103.1| - 0.046 13.9 1.1 0.088 12.9 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) DUF3611 PF12263.8 gi|292656206|ref|YP_003536103.1| - 0.056 13.3 0.1 0.086 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) MMPL PF03176.15 gi|292656207|ref|YP_003536104.1| - 4.3e-48 164.0 15.6 1.7e-26 93.0 6.8 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|292656207|ref|YP_003536104.1| - 6.1e-11 42.4 0.0 6.1e-11 42.4 0.0 3.3 2 2 2 4 4 4 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|292656207|ref|YP_003536104.1| - 4.3e-09 34.7 8.6 6.4e-05 20.8 1.9 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|292656207|ref|YP_003536104.1| - 6.3e-06 24.6 4.7 0.00025 19.3 0.3 3.0 3 0 0 3 3 3 2 Patched family DUF2368 PF10166.9 gi|292656207|ref|YP_003536104.1| - 0.85 9.2 4.8 0.27 10.8 0.6 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2368) OAD_gamma PF04277.13 gi|292656207|ref|YP_003536104.1| - 3.1 8.5 9.3 11 6.7 0.3 4.6 4 0 0 4 4 4 0 Oxaloacetate decarboxylase, gamma chain CARDB PF07705.11 gi|292656208|ref|YP_003536105.1| - 6e-16 58.6 15.8 2.9e-05 24.2 1.6 4.2 4 0 0 4 4 4 3 CARDB NPCBM_assoc PF10633.9 gi|292656208|ref|YP_003536105.1| - 5.3e-15 55.4 21.9 0.00015 22.0 1.5 5.7 4 2 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|292656208|ref|YP_003536105.1| - 0.00039 20.6 4.0 2.4 8.4 0.0 5.1 2 2 3 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase PHTB1_C PF14728.6 gi|292656208|ref|YP_003536105.1| - 0.0012 18.0 0.0 0.21 10.6 0.0 3.1 4 0 0 4 4 4 1 PTHB1 C-terminus Fn3-like PF14310.6 gi|292656208|ref|YP_003536105.1| - 0.0013 18.8 3.8 4.6 7.4 0.0 5.5 7 0 0 7 7 7 1 Fibronectin type III-like domain DUF11 PF01345.18 gi|292656208|ref|YP_003536105.1| - 0.0026 18.0 26.8 0.059 13.7 4.1 5.5 4 2 0 4 4 4 2 Domain of unknown function DUF11 DUF4621 PF15414.6 gi|292656208|ref|YP_003536105.1| - 0.0088 15.0 0.1 0.067 12.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF4621) Ig_mannosidase PF17753.1 gi|292656208|ref|YP_003536105.1| - 0.091 12.5 0.0 14 5.5 0.0 3.3 2 0 0 2 2 2 0 Ig-fold domain TcA_RBD PF18518.1 gi|292656208|ref|YP_003536105.1| - 0.16 12.3 0.0 1 9.6 0.0 2.2 2 0 0 2 2 2 0 TcA receptor binding domain Beta_helix PF13229.6 gi|292656209|ref|YP_003536106.1| - 1.4e-29 103.0 15.1 6.4e-16 58.6 5.0 5.1 3 1 2 5 5 5 4 Right handed beta helix region NosD PF05048.13 gi|292656209|ref|YP_003536106.1| - 3.6e-16 59.2 18.3 3.5e-12 46.1 5.1 4.2 3 1 1 4 4 4 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|292656209|ref|YP_003536106.1| - 0.00015 21.2 12.3 0.0088 15.4 4.6 3.7 2 1 1 3 3 3 2 Protein of unknown function (DUF1565) CARDB PF07705.11 gi|292656210|ref|YP_003536107.1| - 5.9e-08 32.9 12.1 0.0036 17.6 0.1 3.8 3 1 1 4 4 4 3 CARDB ABC_tran PF00005.27 gi|292656211|ref|YP_003536108.1| - 2.1e-37 128.7 0.0 3.1e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656211|ref|YP_003536108.1| - 1.9e-06 27.9 0.3 0.041 13.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656211|ref|YP_003536108.1| - 3e-06 26.9 0.0 0.015 14.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292656211|ref|YP_003536108.1| - 3e-05 23.7 0.1 5.2e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|292656211|ref|YP_003536108.1| - 0.00019 21.9 0.1 0.00045 20.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292656211|ref|YP_003536108.1| - 0.0017 18.6 0.8 0.0093 16.2 0.8 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|292656211|ref|YP_003536108.1| - 0.0018 18.2 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|292656211|ref|YP_003536108.1| - 0.0065 17.0 0.0 0.012 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|292656211|ref|YP_003536108.1| - 0.014 15.1 0.2 0.077 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|292656211|ref|YP_003536108.1| - 0.017 14.9 0.1 0.075 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|292656211|ref|YP_003536108.1| - 0.025 15.0 0.4 4 7.9 0.2 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|292656211|ref|YP_003536108.1| - 0.027 13.6 0.0 0.027 13.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|292656211|ref|YP_003536108.1| - 0.062 13.0 0.0 0.14 11.9 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|292656211|ref|YP_003536108.1| - 0.079 12.9 0.2 8.4 6.3 0.0 2.2 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.17 gi|292656211|ref|YP_003536108.1| - 0.087 12.6 0.0 0.23 11.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|292656211|ref|YP_003536108.1| - 0.15 12.1 0.1 0.51 10.4 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|292656211|ref|YP_003536108.1| - 0.16 12.2 0.4 0.37 10.9 0.3 1.6 1 1 0 1 1 1 0 AAA domain MacB_PCD PF12704.7 gi|292656212|ref|YP_003536109.1| - 4.7e-18 66.3 5.8 4.7e-18 66.3 5.8 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|292656212|ref|YP_003536109.1| - 3.9e-11 43.3 1.2 3.9e-11 43.3 1.2 3.1 3 0 0 3 3 3 1 FtsX-like permease family DUF4064 PF13273.6 gi|292656212|ref|YP_003536109.1| - 0.11 12.8 15.1 0.65 10.3 0.4 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) LptF_LptG PF03739.14 gi|292656212|ref|YP_003536109.1| - 3.5 6.4 8.0 0.82 8.4 4.7 1.6 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG UbiA PF01040.18 gi|292656213|ref|YP_003536110.1| - 4.5e-11 42.5 13.8 4.5e-11 42.5 13.8 2.1 1 1 1 2 2 2 1 UbiA prenyltransferase family HisKA_7TM PF16927.5 gi|292656214|ref|YP_003536111.1| - 2.6e-17 63.6 14.9 3.5e-17 63.2 14.9 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|292656214|ref|YP_003536111.1| - 1.1e-11 45.3 0.1 5e-11 43.1 0.0 2.1 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|292656214|ref|YP_003536111.1| - 1.8e-10 40.9 0.0 4.1e-10 39.7 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|292656214|ref|YP_003536111.1| - 0.00023 21.4 0.0 0.00058 20.1 0.0 1.8 1 1 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|292656214|ref|YP_003536111.1| - 0.0015 18.4 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292656214|ref|YP_003536111.1| - 0.0018 18.5 0.0 0.02 15.1 0.0 2.5 2 1 0 2 2 2 1 PAS fold HisKA_4TM PF16926.5 gi|292656214|ref|YP_003536111.1| - 0.0064 16.1 0.1 0.02 14.5 0.1 1.9 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|292656214|ref|YP_003536111.1| - 0.0083 16.1 0.1 0.017 15.2 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|292656214|ref|YP_003536111.1| - 0.011 15.7 0.1 0.25 11.4 0.1 2.4 1 1 0 1 1 1 0 PAS fold DUF4293 PF14126.6 gi|292656214|ref|YP_003536111.1| - 0.053 13.8 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) HATPase_c_5 PF14501.6 gi|292656214|ref|YP_003536111.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 GHKL domain SPOB_a PF14689.6 gi|292656214|ref|YP_003536111.1| - 0.19 11.4 0.0 0.46 10.2 0.0 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Glyco_hydro_3_C PF01915.22 gi|292656215|ref|YP_003536112.1| - 2.1e-55 187.9 0.1 3.4e-55 187.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|292656215|ref|YP_003536112.1| - 3e-54 184.6 0.0 1.1e-51 176.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|292656215|ref|YP_003536112.1| - 1.3e-15 57.2 0.0 2.9e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain Glyco_hydro_3 PF00933.21 gi|292656216|ref|YP_003536113.1| - 5.3e-74 249.4 0.0 7e-74 249.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|292656216|ref|YP_003536113.1| - 1.5e-44 152.4 0.0 4e-44 151.0 0.0 1.7 2 1 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|292656216|ref|YP_003536113.1| - 5.6e-19 68.0 0.9 1.1e-18 67.1 0.1 1.9 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF4232 PF14016.6 gi|292656216|ref|YP_003536113.1| - 0.00065 19.8 0.6 0.00065 19.8 0.6 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF4232) CARDB PF07705.11 gi|292656216|ref|YP_003536113.1| - 0.041 14.1 0.1 0.093 13.0 0.1 1.5 1 0 0 1 1 1 0 CARDB DUF11 PF01345.18 gi|292656216|ref|YP_003536113.1| - 0.09 13.1 6.4 0.26 11.6 0.8 3.4 3 0 0 3 3 3 0 Domain of unknown function DUF11 Ig_GlcNase PF18368.1 gi|292656216|ref|YP_003536113.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain RHH_5 PF07878.11 gi|292656217|ref|YP_003536114.1| - 0.0088 15.9 0.3 0.13 12.2 0.4 2.2 2 0 0 2 2 2 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Leucyl-specific PF14795.6 gi|292656217|ref|YP_003536114.1| - 0.029 14.5 0.2 0.046 13.8 0.2 1.3 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain Aminotran_3 PF00202.21 gi|292656218|ref|YP_003536115.1| - 3.7e-83 279.4 0.0 1.6e-82 277.3 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|292656218|ref|YP_003536115.1| - 0.01 15.1 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Bac_thur_toxin PF01338.18 gi|292656218|ref|YP_003536115.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacillus thuringiensis toxin IclR PF01614.18 gi|292656219|ref|YP_003536116.1| - 1.5e-33 115.4 0.0 2.5e-33 114.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|292656219|ref|YP_003536116.1| - 2.3e-08 33.7 0.0 6.1e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292656219|ref|YP_003536116.1| - 3.2e-07 30.1 0.0 1.4e-06 28.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|292656219|ref|YP_003536116.1| - 1.4e-06 28.1 0.0 4e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292656219|ref|YP_003536116.1| - 2.7e-06 26.9 0.0 4.4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|292656219|ref|YP_003536116.1| - 0.00044 20.7 0.0 0.0014 19.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|292656219|ref|YP_003536116.1| - 0.0013 18.7 0.0 0.0038 17.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292656219|ref|YP_003536116.1| - 0.0053 16.7 0.0 0.016 15.1 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|292656219|ref|YP_003536116.1| - 0.025 14.3 0.0 0.081 12.7 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|292656219|ref|YP_003536116.1| - 0.03 14.2 0.0 0.069 13.0 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|292656219|ref|YP_003536116.1| - 0.093 12.8 0.0 0.27 11.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_41 PF14502.6 gi|292656219|ref|YP_003536116.1| - 0.1 12.3 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|292656219|ref|YP_003536116.1| - 0.12 12.4 0.0 0.47 10.5 0.0 2.0 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|292656219|ref|YP_003536116.1| - 0.16 11.9 0.0 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 MarR family FeoC PF09012.10 gi|292656219|ref|YP_003536116.1| - 0.16 12.0 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Na_H_antiporter PF03553.14 gi|292656220|ref|YP_003536117.1| - 7.1e-53 179.8 45.5 3e-50 171.2 23.6 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Peripla_BP_2 PF01497.18 gi|292656221|ref|YP_003536118.1| - 1.5e-14 54.1 0.1 1.2e-13 51.2 0.0 1.9 1 1 1 2 2 2 1 Periplasmic binding protein TAT_signal PF10518.9 gi|292656221|ref|YP_003536118.1| - 0.00077 19.2 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ADH_N_2 PF16884.5 gi|292656222|ref|YP_003536119.1| - 8.5e-41 138.2 0.1 1.8e-40 137.2 0.1 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|292656222|ref|YP_003536119.1| - 6.9e-18 64.9 0.2 1.3e-17 64.0 0.1 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|292656222|ref|YP_003536119.1| - 2.7e-10 41.4 0.0 4.8e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|292656223|ref|YP_003536120.1| - 5.2e-44 150.3 0.1 6.3e-44 150.1 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|292656223|ref|YP_003536120.1| - 2e-12 47.1 0.0 3.1e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292656223|ref|YP_003536120.1| - 4.2e-09 35.8 0.0 5.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|292656223|ref|YP_003536120.1| - 1.3e-08 34.7 0.0 2e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family ApbA PF02558.16 gi|292656223|ref|YP_003536120.1| - 0.0023 17.6 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Polysacc_synt_2 PF02719.15 gi|292656223|ref|YP_003536120.1| - 0.0024 17.1 0.0 0.084 12.0 0.0 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|292656223|ref|YP_003536120.1| - 0.019 14.4 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase KR PF08659.10 gi|292656223|ref|YP_003536120.1| - 0.02 14.8 0.0 7 6.5 0.0 2.2 2 0 0 2 2 2 0 KR domain Semialdhyde_dh PF01118.24 gi|292656223|ref|YP_003536120.1| - 0.022 15.2 0.1 0.046 14.2 0.1 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|292656223|ref|YP_003536120.1| - 0.099 12.7 0.6 2.1 8.5 0.6 2.3 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|292656223|ref|YP_003536120.1| - 0.11 11.6 0.0 0.23 10.5 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain DapB_N PF01113.20 gi|292656223|ref|YP_003536120.1| - 0.16 12.1 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus MFS_1 PF07690.16 gi|292656224|ref|YP_003536121.1| - 1.9e-48 165.2 86.6 8e-35 120.4 51.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292656224|ref|YP_003536121.1| - 2.1e-05 23.6 7.9 2.1e-05 23.6 7.9 2.9 2 1 1 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|292656224|ref|YP_003536121.1| - 0.00012 21.1 38.0 0.0003 19.8 13.8 2.8 2 2 0 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|292656224|ref|YP_003536121.1| - 0.0029 17.0 45.8 0.0037 16.6 45.8 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|292656224|ref|YP_003536121.1| - 0.75 8.0 22.4 0.43 8.8 1.1 4.0 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family AcrZ PF10766.9 gi|292656225|ref|YP_003536122.1| - 0.4 10.3 4.6 0.53 9.9 4.6 1.3 1 0 0 1 1 1 0 Multidrug efflux pump-associated protein AcrZ Dioxygenase_C PF00775.21 gi|292656226|ref|YP_003536123.1| - 1.8e-15 56.9 0.3 5.9e-14 51.9 0.3 2.2 1 1 0 1 1 1 1 Dioxygenase HcyBio PF01837.16 gi|292656227|ref|YP_003536124.1| - 0.17 10.7 0.0 0.18 10.6 0.0 1.0 1 0 0 1 1 1 0 Homocysteine biosynthesis enzyme, sulfur-incorporation PTS-HPr PF00381.19 gi|292656228|ref|YP_003536125.1| - 1.2e-28 99.1 0.3 1.4e-28 99.0 0.3 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.22 gi|292656229|ref|YP_003536126.1| - 1.3e-19 70.5 0.0 1.6e-19 70.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SLT_L PF14718.6 gi|292656229|ref|YP_003536126.1| - 0.045 13.9 0.7 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain EIIC-GAT PF03611.14 gi|292656230|ref|YP_003536127.1| - 8.4e-73 245.7 34.3 8.4e-73 245.7 34.3 1.6 2 0 0 2 2 2 1 PTS system sugar-specific permease component PTS_IIB PF02302.17 gi|292656231|ref|YP_003536128.1| - 2.7e-12 47.2 0.1 3.1e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit TIM PF00121.18 gi|292656232|ref|YP_003536129.1| - 5.7e-05 22.6 0.0 0.00015 21.2 0.0 1.6 2 0 0 2 2 2 1 Triosephosphate isomerase His_biosynth PF00977.21 gi|292656232|ref|YP_003536129.1| - 0.04 13.4 0.0 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein B12-binding PF02310.19 gi|292656232|ref|YP_003536129.1| - 0.082 12.9 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 B12 binding domain DeoC PF01791.9 gi|292656233|ref|YP_003536130.1| - 1.5e-27 96.8 0.0 1.7e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase UPF0047 PF01894.17 gi|292656234|ref|YP_003536131.1| - 5.1e-30 104.0 0.0 5.9e-30 103.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 IclR PF01614.18 gi|292656235|ref|YP_003536132.1| - 8e-36 122.7 0.0 1.4e-35 121.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|292656235|ref|YP_003536132.1| - 3.1e-13 49.3 1.1 1.2e-12 47.4 0.1 2.3 3 0 0 3 3 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292656235|ref|YP_003536132.1| - 2.9e-07 30.3 0.1 1.1e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|292656235|ref|YP_003536132.1| - 3.3e-07 30.0 0.0 8.4e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|292656235|ref|YP_003536132.1| - 3.3e-06 26.6 0.0 5.7e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292656235|ref|YP_003536132.1| - 8.8e-06 25.6 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292656235|ref|YP_003536132.1| - 7.4e-05 22.7 0.2 0.0002 21.4 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|292656235|ref|YP_003536132.1| - 0.00011 22.1 0.3 0.00063 19.6 0.0 2.4 2 1 1 3 3 3 1 HTH domain HTH_AsnC-type PF13404.6 gi|292656235|ref|YP_003536132.1| - 0.0011 18.7 0.0 0.003 17.3 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|292656235|ref|YP_003536132.1| - 0.0014 18.5 0.0 0.0039 17.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DprA_WH PF17782.1 gi|292656235|ref|YP_003536132.1| - 0.0023 18.0 0.0 0.46 10.6 0.0 2.6 2 0 0 2 2 2 1 DprA winged helix domain TrmB PF01978.19 gi|292656235|ref|YP_003536132.1| - 0.0089 15.9 0.1 0.064 13.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|292656235|ref|YP_003536132.1| - 0.011 15.9 0.1 0.13 12.5 0.0 2.6 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|292656235|ref|YP_003536132.1| - 0.039 13.7 0.1 0.24 11.2 0.0 2.2 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HTH_9 PF08221.11 gi|292656235|ref|YP_003536132.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.21 gi|292656235|ref|YP_003536132.1| - 0.079 12.6 0.1 0.26 11.0 0.0 1.9 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|292656235|ref|YP_003536132.1| - 0.11 12.0 0.1 0.25 10.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TFIIE_alpha PF02002.17 gi|292656235|ref|YP_003536132.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit FGGY_N PF00370.21 gi|292656236|ref|YP_003536133.1| - 2.2e-10 40.5 0.0 4.2e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|292656236|ref|YP_003536133.1| - 0.01 15.6 0.0 0.021 14.5 0.0 1.5 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain IclR PF01614.18 gi|292656237|ref|YP_003536134.1| - 1.2e-27 96.3 0.0 6.9e-27 93.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|292656237|ref|YP_003536134.1| - 4.5e-12 45.6 0.1 1.1e-11 44.4 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|292656237|ref|YP_003536134.1| - 2.4e-07 30.5 0.0 9.2e-07 28.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|292656237|ref|YP_003536134.1| - 9.9e-07 28.6 0.3 2.1e-06 27.5 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|292656237|ref|YP_003536134.1| - 2.8e-06 26.8 0.0 7.2e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|292656237|ref|YP_003536134.1| - 0.00081 19.4 0.1 0.0018 18.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|292656237|ref|YP_003536134.1| - 0.0016 18.5 0.0 0.0034 17.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|292656237|ref|YP_003536134.1| - 0.0028 17.7 0.0 0.0062 16.5 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|292656237|ref|YP_003536134.1| - 0.008 16.1 0.0 0.11 12.4 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|292656237|ref|YP_003536134.1| - 0.025 14.4 0.1 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF742 PF05331.11 gi|292656237|ref|YP_003536134.1| - 0.064 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DprA_WH PF17782.1 gi|292656237|ref|YP_003536134.1| - 0.083 13.0 0.2 0.18 12.0 0.2 1.5 1 0 0 1 1 1 0 DprA winged helix domain tRNA_int_endo PF01974.17 gi|292656237|ref|YP_003536134.1| - 0.083 13.0 0.2 0.19 11.8 0.1 1.7 2 0 0 2 2 1 0 tRNA intron endonuclease, catalytic C-terminal domain Fe_dep_repress PF01325.19 gi|292656237|ref|YP_003536134.1| - 0.14 12.4 0.3 0.28 11.4 0.3 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PdxA PF04166.12 gi|292656238|ref|YP_003536135.1| - 1.9e-107 358.9 0.8 2.3e-107 358.6 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA SBD_N PF07005.11 gi|292656239|ref|YP_003536136.1| - 1.9e-45 155.4 5.3 3.9e-45 154.3 5.3 1.5 1 0 0 1 1 1 1 Sugar-binding N-terminal domain NBD_C PF17042.5 gi|292656239|ref|YP_003536136.1| - 9.4e-24 84.8 2.2 9.4e-24 84.8 2.2 2.6 3 0 0 3 3 3 1 Nucleotide-binding C-terminal domain P5CR_dimer PF14748.6 gi|292656239|ref|YP_003536136.1| - 0.19 12.0 2.1 0.2 11.9 0.2 2.0 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Phage_holin_2_1 PF04971.12 gi|292656239|ref|YP_003536136.1| - 1 9.4 3.7 2.2 8.3 3.7 1.5 1 0 0 1 1 1 0 Bacteriophage P21 holin S DUF4774 PF15999.5 gi|292656239|ref|YP_003536136.1| - 3.1 7.7 11.6 2.8 7.8 3.7 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4774) SBP_bac_1 PF01547.25 gi|292656240|ref|YP_003536137.1| - 5e-09 36.5 0.0 1.5e-08 35.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Peptidase_C92 PF05708.12 gi|292656240|ref|YP_003536137.1| - 0.0025 17.9 0.0 0.044 13.9 0.0 2.2 2 0 0 2 2 2 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Serglycin PF04360.12 gi|292656240|ref|YP_003536137.1| - 0.043 13.8 2.2 0.093 12.7 2.2 1.6 1 0 0 1 1 1 0 Serglycin TAT_signal PF10518.9 gi|292656240|ref|YP_003536137.1| - 0.072 13.0 4.3 0.15 11.9 4.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DHDPS PF00701.22 gi|292656241|ref|YP_003536138.1| - 1.7e-47 161.6 0.0 1.9e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DMRL_synthase PF00885.19 gi|292656241|ref|YP_003536138.1| - 0.069 13.0 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase Aldo_ket_red PF00248.21 gi|292656242|ref|YP_003536139.1| - 8.2e-60 202.5 0.0 1.3e-57 195.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family BPD_transp_1 PF00528.22 gi|292656243|ref|YP_003536140.1| - 8.6e-23 81.0 17.8 8.6e-23 81.0 17.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component RAB3GAP2_N PF14655.6 gi|292656243|ref|YP_003536140.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit N-terminus BPD_transp_1 PF00528.22 gi|292656244|ref|YP_003536141.1| - 5.3e-14 52.4 20.1 5.3e-14 52.4 20.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|292656245|ref|YP_003536142.1| - 1.9e-30 106.2 0.0 3.2e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|292656245|ref|YP_003536142.1| - 6e-11 43.0 0.2 2.8e-10 40.9 0.1 2.2 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|292656245|ref|YP_003536142.1| - 2.6e-09 37.1 1.7 1.1e-08 35.1 0.1 2.4 1 1 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|292656245|ref|YP_003536142.1| - 0.00017 22.1 3.2 0.00068 20.2 1.7 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|292656245|ref|YP_003536142.1| - 0.0035 17.8 0.1 0.019 15.4 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|292656245|ref|YP_003536142.1| - 0.0041 17.0 0.0 0.06 13.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system G-alpha PF00503.20 gi|292656245|ref|YP_003536142.1| - 0.011 14.9 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 gi|292656245|ref|YP_003536142.1| - 0.015 15.8 4.0 0.029 14.9 4.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|292656245|ref|YP_003536142.1| - 0.042 13.6 0.1 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|292656245|ref|YP_003536142.1| - 0.05 13.5 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain His_biosynth PF00977.21 gi|292656245|ref|YP_003536142.1| - 0.051 13.0 0.1 0.09 12.2 0.1 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein AAA_22 PF13401.6 gi|292656245|ref|YP_003536142.1| - 0.062 13.6 0.5 0.16 12.3 0.5 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|292656245|ref|YP_003536142.1| - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|292656245|ref|YP_003536142.1| - 0.072 13.5 0.3 0.14 12.6 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Lar_restr_allev PF14354.6 gi|292656246|ref|YP_003536143.1| - 0.13 12.6 3.4 0.29 11.5 3.4 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar BNR_2 PF13088.6 gi|292656247|ref|YP_003536144.1| - 1e-15 57.8 0.0 9.5e-15 54.6 0.0 2.1 1 1 1 2 2 2 2 BNR repeat-like domain BNR PF02012.20 gi|292656247|ref|YP_003536144.1| - 3.4e-08 32.3 26.3 0.45 10.7 0.5 6.4 5 0 0 5 5 5 5 BNR/Asp-box repeat BNR_3 PF13859.6 gi|292656247|ref|YP_003536144.1| - 1e-07 31.6 0.0 1.7e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 BNR repeat-like domain Sortilin-Vps10 PF15902.5 gi|292656247|ref|YP_003536144.1| - 0.0039 16.0 5.1 0.24 10.2 0.2 3.6 1 1 2 4 4 4 3 Sortilin, neurotensin receptor 3, ABC_tran PF00005.27 gi|292656249|ref|YP_003536146.1| - 5.4e-33 114.4 0.0 7.9e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292656249|ref|YP_003536146.1| - 1.3e-19 70.4 0.2 2.3e-19 69.6 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|292656249|ref|YP_003536146.1| - 5.7e-05 23.4 1.1 0.00092 19.5 1.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|292656249|ref|YP_003536146.1| - 0.0016 18.3 0.9 0.031 14.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|292656249|ref|YP_003536146.1| - 0.0022 18.4 0.8 0.0043 17.4 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|292656249|ref|YP_003536146.1| - 0.0096 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|292656249|ref|YP_003536146.1| - 0.021 15.2 0.0 0.2 12.1 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|292656249|ref|YP_003536146.1| - 0.078 13.3 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|292656249|ref|YP_003536146.1| - 0.13 12.5 0.2 0.22 11.7 0.2 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|292656249|ref|YP_003536146.1| - 0.13 11.4 0.1 0.28 10.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AIG1 PF04548.16 gi|292656249|ref|YP_003536146.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Sigma54_activat PF00158.26 gi|292656249|ref|YP_003536146.1| - 0.14 11.9 0.1 3 7.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Pilin_PilA PF14245.6 gi|292656249|ref|YP_003536146.1| - 0.15 12.1 0.2 1.7 8.6 0.1 2.2 2 0 0 2 2 2 0 Type IV pilin PilA ABC_tran PF00005.27 gi|292656250|ref|YP_003536147.1| - 6.2e-26 91.5 0.0 8.4e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292656250|ref|YP_003536147.1| - 2.5e-22 79.1 0.1 4.5e-22 78.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292656250|ref|YP_003536147.1| - 1e-05 25.5 0.3 7.5e-05 22.7 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656250|ref|YP_003536147.1| - 0.0027 17.2 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|292656250|ref|YP_003536147.1| - 0.029 14.6 0.4 0.38 11.0 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|292656250|ref|YP_003536147.1| - 0.12 12.0 0.1 16 5.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|292656250|ref|YP_003536147.1| - 0.18 11.6 0.1 0.32 10.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|292656251|ref|YP_003536148.1| - 1.1e-32 113.3 5.5 1.1e-32 113.3 5.5 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|292656251|ref|YP_003536148.1| - 2.3e-12 46.7 0.0 2.3e-12 46.7 0.0 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C SDF PF00375.18 gi|292656251|ref|YP_003536148.1| - 0.00053 19.1 1.9 0.00053 19.1 1.9 1.4 2 0 0 2 2 2 1 Sodium:dicarboxylate symporter family BPD_transp_1 PF00528.22 gi|292656252|ref|YP_003536149.1| - 7.6e-38 130.1 10.5 7.6e-38 130.1 10.5 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|292656253|ref|YP_003536150.1| - 2.5e-74 250.5 1.2 2.5e-74 250.5 1.2 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|292656253|ref|YP_003536150.1| - 0.015 15.1 3.6 0.033 14.1 3.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M20 PF01546.28 gi|292656254|ref|YP_003536151.1| - 8.4e-23 81.2 1.2 1.4e-22 80.4 1.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292656254|ref|YP_003536151.1| - 1.8e-10 40.7 0.3 5.2e-10 39.2 0.3 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|292656255|ref|YP_003536152.1| - 5.3e-25 88.3 2.1 7.6e-25 87.8 2.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|292656255|ref|YP_003536152.1| - 8.6e-07 28.9 0.9 1.2e-06 28.4 0.1 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain IclR PF01614.18 gi|292656257|ref|YP_003536154.1| - 8.2e-38 129.2 0.1 2.3e-37 127.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_5 PF01022.20 gi|292656257|ref|YP_003536154.1| - 1.7e-09 37.4 0.0 4.1e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|292656257|ref|YP_003536154.1| - 7.5e-09 35.3 0.2 5.3e-08 32.5 0.1 2.4 3 0 0 3 3 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|292656257|ref|YP_003536154.1| - 0.00021 21.2 0.1 0.0017 18.2 0.0 2.5 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|292656257|ref|YP_003536154.1| - 0.00066 19.7 0.1 0.0014 18.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|292656257|ref|YP_003536154.1| - 0.00077 19.3 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|292656257|ref|YP_003536154.1| - 0.0015 18.4 0.1 0.0061 16.4 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292656257|ref|YP_003536154.1| - 0.0015 18.4 0.0 0.004 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|292656257|ref|YP_003536154.1| - 0.0067 16.2 0.0 0.026 14.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_27 PF13463.6 gi|292656257|ref|YP_003536154.1| - 0.017 15.6 0.1 0.036 14.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.7 gi|292656257|ref|YP_003536154.1| - 0.019 15.1 0.0 0.093 12.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|292656257|ref|YP_003536154.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.14 gi|292656257|ref|YP_003536154.1| - 0.075 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.11 gi|292656257|ref|YP_003536154.1| - 0.086 12.9 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_DeoR PF08220.12 gi|292656257|ref|YP_003536154.1| - 0.11 12.3 0.5 0.28 10.9 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain sCache_3_3 PF17202.4 gi|292656257|ref|YP_003536154.1| - 0.11 13.0 0.0 1.7 9.1 0.0 2.4 2 0 0 2 2 2 0 Single cache domain 3 HTH_40 PF14493.6 gi|292656257|ref|YP_003536154.1| - 0.13 12.8 0.1 0.31 11.5 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain FBPase PF00316.20 gi|292656258|ref|YP_003536155.1| - 6.9e-20 71.3 0.0 1e-19 70.8 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|292656258|ref|YP_003536155.1| - 0.19 11.2 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Inositol monophosphatase family NADH_dh_m_C1 PF15088.6 gi|292656259|ref|YP_003536156.1| - 0.72 9.5 2.4 0.47 10.1 0.4 1.7 1 1 1 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial AAA_16 PF13191.6 gi|292656260|ref|YP_003536157.1| - 2.4e-10 41.1 0.5 1.7e-09 38.3 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292656260|ref|YP_003536157.1| - 2.6e-08 34.2 0.0 1.8e-07 31.5 0.0 2.2 2 1 1 3 3 3 1 AAA domain Rrf2 PF02082.20 gi|292656260|ref|YP_003536157.1| - 0.00017 21.9 0.1 0.00037 20.8 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|292656260|ref|YP_003536157.1| - 0.00026 20.9 0.2 0.00061 19.7 0.2 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|292656260|ref|YP_003536157.1| - 0.00099 19.0 1.9 0.0018 18.1 0.8 2.0 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|292656260|ref|YP_003536157.1| - 0.0037 16.8 0.0 0.01 15.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TniB PF05621.11 gi|292656260|ref|YP_003536157.1| - 0.0051 16.2 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein HTH_AsnC-type PF13404.6 gi|292656260|ref|YP_003536157.1| - 0.02 14.7 0.1 0.11 12.3 0.1 2.4 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.15 gi|292656260|ref|YP_003536157.1| - 0.021 14.9 0.0 0.14 12.2 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase ATPase_2 PF01637.18 gi|292656260|ref|YP_003536157.1| - 0.021 14.7 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea HTH_Tnp_ISL3 PF13542.6 gi|292656260|ref|YP_003536157.1| - 0.038 13.4 0.4 0.14 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 AAA_assoc_2 PF16193.5 gi|292656260|ref|YP_003536157.1| - 0.04 14.3 0.2 0.12 12.7 0.2 1.8 1 0 0 1 1 1 0 AAA C-terminal domain AAA PF00004.29 gi|292656260|ref|YP_003536157.1| - 0.041 14.3 0.0 0.084 13.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_23 PF13384.6 gi|292656260|ref|YP_003536157.1| - 0.042 13.7 1.0 0.075 12.8 0.1 2.0 2 0 0 2 2 1 0 Homeodomain-like domain RNA_helicase PF00910.22 gi|292656260|ref|YP_003536157.1| - 0.053 13.9 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase HTH_IclR PF09339.10 gi|292656260|ref|YP_003536157.1| - 0.071 12.9 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA_19 PF13245.6 gi|292656260|ref|YP_003536157.1| - 0.099 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_29 PF13551.6 gi|292656260|ref|YP_003536157.1| - 0.1 12.7 0.8 0.17 11.9 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn helix AAA_29 PF13555.6 gi|292656260|ref|YP_003536157.1| - 0.12 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|292656260|ref|YP_003536157.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|292656260|ref|YP_003536157.1| - 0.12 12.2 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase DUF2249 PF10006.9 gi|292656261|ref|YP_003536158.1| - 2.4e-25 88.2 0.4 2.7e-25 88.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) CoxIIa PF08113.11 gi|292656263|ref|YP_003536160.1| - 0.14 12.0 1.8 1.4 8.8 0.5 2.4 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IIa family Cupin_2 PF07883.11 gi|292656264|ref|YP_003536161.1| - 1.3e-09 37.7 0.1 1.5e-09 37.4 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|292656264|ref|YP_003536161.1| - 0.0069 16.0 0.1 0.014 15.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Pirin PF02678.16 gi|292656264|ref|YP_003536161.1| - 0.014 15.4 0.0 0.015 15.3 0.0 1.1 1 0 0 1 1 1 0 Pirin AraC_binding PF02311.19 gi|292656264|ref|YP_003536161.1| - 0.041 13.8 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C PF05726.13 gi|292656264|ref|YP_003536161.1| - 0.063 13.6 0.0 0.075 13.4 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain PCO_ADO PF07847.12 gi|292656264|ref|YP_003536161.1| - 0.077 12.4 0.0 0.089 12.2 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO MIP-T3_C PF17749.1 gi|292656266|ref|YP_003536163.1| - 0.084 12.8 4.2 0.97 9.4 0.0 2.0 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Cu-oxidase_3 PF07732.15 gi|292656268|ref|YP_003536165.1| - 6.5e-14 52.0 0.3 4.6e-13 49.2 0.1 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|292656268|ref|YP_003536165.1| - 5e-09 36.0 4.1 2e-07 30.8 0.8 3.4 3 1 0 3 3 3 1 Multicopper oxidase Copper-bind PF00127.20 gi|292656268|ref|YP_003536165.1| - 9.2e-07 29.2 0.6 2.8e-05 24.5 0.2 2.5 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|292656268|ref|YP_003536165.1| - 6.3e-05 23.0 0.0 0.00054 20.0 0.0 2.1 2 0 0 2 2 2 1 Cupredoxin-like domain zinc-ribbons_6 PF07191.12 gi|292656269|ref|YP_003536166.1| - 0.0022 17.9 0.4 0.0029 17.6 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbons C1_1 PF00130.22 gi|292656269|ref|YP_003536166.1| - 0.0089 15.9 1.1 0.012 15.5 1.1 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) PhnA_Zn_Ribbon PF08274.12 gi|292656269|ref|YP_003536166.1| - 0.022 14.7 0.4 0.046 13.7 0.4 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon IBR PF01485.21 gi|292656269|ref|YP_003536166.1| - 0.023 14.9 0.3 0.029 14.6 0.3 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DpnI PF06044.12 gi|292656269|ref|YP_003536166.1| - 0.024 14.3 0.1 0.026 14.2 0.1 1.1 1 0 0 1 1 1 0 Dam-replacing family DZR PF12773.7 gi|292656269|ref|YP_003536166.1| - 0.03 14.3 1.7 0.058 13.4 1.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|292656269|ref|YP_003536166.1| - 0.033 13.7 0.3 0.092 12.3 0.3 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|292656269|ref|YP_003536166.1| - 0.047 14.0 2.6 0.094 13.0 2.6 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RNA_POL_M_15KD PF02150.16 gi|292656269|ref|YP_003536166.1| - 0.052 13.4 0.7 0.09 12.7 0.7 1.4 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2310 PF10071.9 gi|292656269|ref|YP_003536166.1| - 0.062 12.6 0.4 0.076 12.3 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HypA PF01155.19 gi|292656269|ref|YP_003536166.1| - 0.065 13.2 0.0 0.074 13.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|292656269|ref|YP_003536166.1| - 0.078 12.9 0.9 0.11 12.5 0.9 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain GFA PF04828.14 gi|292656269|ref|YP_003536166.1| - 0.08 13.3 3.7 0.12 12.7 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HscB_4_cys PF18256.1 gi|292656269|ref|YP_003536166.1| - 0.091 12.6 5.4 0.43 10.4 5.4 2.0 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif SPATA48 PF15073.6 gi|292656269|ref|YP_003536166.1| - 0.15 12.4 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated protein 48 Zn-ribbon_8 PF09723.10 gi|292656269|ref|YP_003536166.1| - 0.21 11.8 3.1 1.1 9.4 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|292656269|ref|YP_003536166.1| - 0.26 11.0 3.0 7.5 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2249 PF10006.9 gi|292656270|ref|YP_003536167.1| - 1.2e-15 57.1 0.1 1.5e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|292656270|ref|YP_003536167.1| - 0.0012 18.6 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Radical_SAM PF04055.21 gi|292656271|ref|YP_003536168.1| - 3.8e-18 66.4 0.0 5.8e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|292656271|ref|YP_003536168.1| - 8.7e-05 22.8 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|292656271|ref|YP_003536168.1| - 0.0018 18.4 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Copper-bind PF00127.20 gi|292656272|ref|YP_003536169.1| - 7.7e-16 58.4 0.8 7.5e-15 55.2 0.8 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|292656272|ref|YP_003536169.1| - 4.4e-06 26.7 0.0 6.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.20 gi|292656272|ref|YP_003536169.1| - 0.00026 20.7 1.4 0.00026 20.7 1.4 2.7 3 1 0 3 3 3 1 PKD domain COX1 PF00115.20 gi|292656274|ref|YP_003536171.1| - 1.9e-59 201.6 49.5 1.9e-59 201.6 49.5 1.9 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|292656274|ref|YP_003536171.1| - 0.0015 18.8 0.8 0.0015 18.8 0.8 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) DUF4307 PF14155.6 gi|292656274|ref|YP_003536171.1| - 0.35 10.7 4.9 15 5.5 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) Phage_Coat_Gp8 PF05371.12 gi|292656274|ref|YP_003536171.1| - 3.5 7.5 8.6 0.13 12.0 0.9 2.4 2 0 0 2 2 2 0 Phage major coat protein, Gp8 DUF4699 PF15770.5 gi|292656275|ref|YP_003536172.1| - 0.57 9.9 3.6 0.82 9.4 3.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4699) DUF1427 PF07235.11 gi|292656277|ref|YP_003536174.1| - 0.00025 20.9 4.4 0.00031 20.6 4.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) Copper-bind PF00127.20 gi|292656278|ref|YP_003536175.1| - 5.3e-33 113.4 1.2 1.8e-15 57.2 0.1 3.5 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|292656278|ref|YP_003536175.1| - 6.7e-11 42.2 0.0 3.5e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|292656278|ref|YP_003536175.1| - 0.012 15.4 1.5 0.012 15.4 1.5 3.1 3 0 0 3 3 3 0 PKD domain Jag_N PF14804.6 gi|292656278|ref|YP_003536175.1| - 0.044 14.1 0.0 5.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Jag N-terminus DUF3715 PF12509.8 gi|292656278|ref|YP_003536175.1| - 0.1 12.6 0.0 22 5.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3715) HTH_10 PF04967.12 gi|292656279|ref|YP_003536176.1| - 3.4e-18 65.2 0.1 5.9e-18 64.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|292656279|ref|YP_003536176.1| - 1.1e-08 35.1 1.8 1.7e-08 34.5 1.8 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_IclR PF09339.10 gi|292656279|ref|YP_003536176.1| - 0.00046 19.9 0.6 0.0013 18.5 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|292656279|ref|YP_003536176.1| - 0.024 14.5 0.1 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292656279|ref|YP_003536176.1| - 0.032 13.8 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|292656279|ref|YP_003536176.1| - 0.062 13.2 0.1 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 MarR family PuR_N PF09182.10 gi|292656279|ref|YP_003536176.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_35 PF13693.6 gi|292656279|ref|YP_003536176.1| - 0.13 12.4 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292656279|ref|YP_003536176.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292656280|ref|YP_003536177.1| - 1.1e-15 57.4 0.2 1.9e-15 56.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292656280|ref|YP_003536177.1| - 2e-10 40.3 0.0 4e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292656280|ref|YP_003536177.1| - 2.4e-09 36.9 0.5 4.4e-09 36.1 0.5 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|292656280|ref|YP_003536177.1| - 5.2e-08 32.7 0.0 9.3e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|292656280|ref|YP_003536177.1| - 1.2e-06 28.3 0.0 2.1e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|292656280|ref|YP_003536177.1| - 1.2e-05 25.3 0.0 2.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|292656280|ref|YP_003536177.1| - 3.3e-05 23.8 0.0 5.7e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|292656280|ref|YP_003536177.1| - 7.8e-05 22.5 0.0 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|292656280|ref|YP_003536177.1| - 0.0002 20.9 0.0 0.00035 20.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|292656280|ref|YP_003536177.1| - 0.00097 19.1 0.1 0.0016 18.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.6 gi|292656280|ref|YP_003536177.1| - 0.0021 18.5 0.0 0.0037 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF742 PF05331.11 gi|292656280|ref|YP_003536177.1| - 0.0041 16.9 0.1 0.0098 15.7 0.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF742) FUR PF01475.19 gi|292656280|ref|YP_003536177.1| - 0.0053 16.9 0.0 0.0081 16.3 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_28 PF13518.6 gi|292656280|ref|YP_003536177.1| - 0.0078 16.3 0.1 0.014 15.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|292656280|ref|YP_003536177.1| - 0.012 15.3 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain RuvB_C PF05491.13 gi|292656280|ref|YP_003536177.1| - 0.02 14.8 0.0 0.049 13.5 0.0 1.6 2 0 0 2 2 1 0 RuvB C-terminal winged helix domain HTH_AsnC-type PF13404.6 gi|292656280|ref|YP_003536177.1| - 0.022 14.6 0.0 0.05 13.4 0.0 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain RP-C PF03428.13 gi|292656280|ref|YP_003536177.1| - 0.023 14.3 0.1 0.036 13.7 0.1 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain EutK_C PF16365.5 gi|292656280|ref|YP_003536177.1| - 0.03 14.4 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilization protein EutK C-terminus Rrf2 PF02082.20 gi|292656280|ref|YP_003536177.1| - 0.046 14.1 0.0 0.08 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|292656280|ref|YP_003536177.1| - 0.064 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_CodY PF08222.11 gi|292656280|ref|YP_003536177.1| - 0.08 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain Replic_Relax PF13814.6 gi|292656280|ref|YP_003536177.1| - 0.12 12.4 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation Sigma70_r4 PF04545.16 gi|292656280|ref|YP_003536177.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|292656280|ref|YP_003536177.1| - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain HemN_C PF06969.16 gi|292656280|ref|YP_003536177.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HTH_40 PF14493.6 gi|292656280|ref|YP_003536177.1| - 0.17 12.4 0.0 0.37 11.3 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_54 PF18607.1 gi|292656280|ref|YP_003536177.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 ParA helix turn helix domain Cu-oxidase_2 PF07731.14 gi|292656281|ref|YP_003536178.1| - 2.8e-29 101.6 15.3 1.3e-19 70.3 3.7 3.2 2 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|292656281|ref|YP_003536178.1| - 5.1e-24 84.6 5.4 8.8e-18 64.5 0.7 2.6 2 0 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|292656281|ref|YP_003536178.1| - 9.5e-14 51.8 0.1 2.9e-13 50.2 0.0 1.8 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|292656281|ref|YP_003536178.1| - 1.7e-05 24.9 0.0 0.33 11.1 0.0 2.6 2 1 0 2 2 2 2 Cupredoxin-like domain UCR_Fe-S_N PF10399.9 gi|292656281|ref|YP_003536178.1| - 0.00068 18.9 1.7 0.0013 18.1 1.7 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|292656281|ref|YP_003536178.1| - 0.0051 16.6 3.0 0.0088 15.9 3.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ThiC_Rad_SAM PF01964.18 gi|292656282|ref|YP_003536179.1| - 2.4e-192 639.3 0.0 2.8e-192 639.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Nudix_N_2 PF14803.6 gi|292656282|ref|YP_003536179.1| - 0.41 10.6 2.3 3.7 7.5 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal Na_Ca_ex PF01699.24 gi|292656283|ref|YP_003536180.1| - 2.3e-42 144.5 31.7 1.3e-21 77.1 9.5 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF5441 PF17513.2 gi|292656283|ref|YP_003536180.1| - 0.011 15.5 0.2 0.026 14.3 0.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5441) 2TM PF13239.6 gi|292656283|ref|YP_003536180.1| - 0.44 10.9 1.8 0.79 10.1 0.0 2.4 3 0 0 3 3 3 0 2TM domain Usp PF00582.26 gi|292656284|ref|YP_003536181.1| - 4e-64 215.4 7.4 3.9e-36 124.7 0.3 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.10 gi|292656284|ref|YP_003536181.1| - 0.1 12.6 0.1 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein PTA_PTB PF01515.19 gi|292656286|ref|YP_003536183.1| - 1e-93 314.2 0.0 1.5e-93 313.6 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|292656286|ref|YP_003536183.1| - 4.2e-29 101.6 0.0 1.6e-26 93.2 0.0 2.8 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|292656286|ref|YP_003536183.1| - 4.8e-21 75.2 0.2 1.3e-20 73.7 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF3798 PF12683.7 gi|292656286|ref|YP_003536183.1| - 0.04 13.3 0.0 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3798) HTH_31 PF13560.6 gi|292656286|ref|YP_003536183.1| - 0.047 14.0 0.5 0.2 12.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Acyl-CoA_dh_C PF12806.7 gi|292656286|ref|YP_003536183.1| - 0.098 12.8 0.6 2.1 8.5 0.1 2.7 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Big_3_3 PF13750.6 gi|292656288|ref|YP_003536185.1| - 7.7e-08 32.1 61.9 0.00073 19.2 6.8 10.6 8 4 2 10 10 10 5 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.13 gi|292656288|ref|YP_003536185.1| - 3.3e-06 26.9 13.3 0.067 13.2 0.4 8.1 10 0 0 10 10 10 2 Y_Y_Y domain DUF4625 PF15418.6 gi|292656288|ref|YP_003536185.1| - 5.9e-06 26.5 23.9 0.36 11.1 0.7 10.1 8 1 1 11 11 11 3 Domain of unknown function (DUF4625) PGF-CTERM PF18204.1 gi|292656288|ref|YP_003536185.1| - 1.6e-05 24.7 10.6 3.6e-05 23.6 10.6 1.6 1 0 0 1 1 1 1 PGF-CTERM motif FlgD_ig PF13860.6 gi|292656288|ref|YP_003536185.1| - 8.2e-05 22.4 0.5 8.2e-05 22.4 0.5 11.1 11 0 0 11 11 11 2 FlgD Ig-like domain ChitinaseA_N PF08329.10 gi|292656288|ref|YP_003536185.1| - 0.00046 19.8 19.4 0.51 10.0 0.3 7.5 5 1 2 7 7 7 2 Chitinase A, N-terminal domain Transglut_C PF00927.22 gi|292656288|ref|YP_003536185.1| - 0.0068 16.5 2.2 4.2 7.5 0.0 4.6 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain Big_7 PF17957.1 gi|292656288|ref|YP_003536185.1| - 0.0081 16.9 2.3 0.0081 16.9 2.3 19.4 17 3 2 19 19 17 5 Bacterial Ig domain HupF_HypC PF01455.18 gi|292656288|ref|YP_003536185.1| - 0.0089 16.2 0.2 0.059 13.5 0.2 2.5 1 0 0 1 1 1 1 HupF/HypC family Big_3_4 PF13754.6 gi|292656288|ref|YP_003536185.1| - 0.02 14.7 4.9 6.8 6.5 0.0 5.2 6 0 0 6 6 5 0 Domain of unknown function SoxY PF13501.6 gi|292656288|ref|YP_003536185.1| - 0.025 14.8 5.4 0.12 12.6 0.1 5.0 5 0 0 5 5 5 0 Sulfur oxidation protein SoxY YtkA PF13115.6 gi|292656288|ref|YP_003536185.1| - 0.065 13.8 12.8 0.69 10.5 2.3 7.0 4 1 0 4 4 4 0 YtkA-like DUF4198 PF10670.9 gi|292656288|ref|YP_003536185.1| - 1 9.7 22.1 0.24 11.8 2.4 6.3 6 1 1 7 7 7 0 Domain of unknown function (DUF4198) DUF3244 PF11589.8 gi|292656289|ref|YP_003536186.1| - 0.2 11.8 0.0 0.2 11.8 0.0 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF3244) SAPS PF04499.15 gi|292656289|ref|YP_003536186.1| - 2.7 6.7 4.2 3.4 6.3 4.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein BAT2_N PF07001.11 gi|292656289|ref|YP_003536186.1| - 4.4 7.7 12.8 3 8.3 10.9 1.6 2 0 0 2 2 2 0 BAT2 N-terminus YdjM PF04307.14 gi|292656290|ref|YP_003536187.1| - 7e-11 41.7 4.7 9e-11 41.4 4.7 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MscS_TM PF12794.7 gi|292656290|ref|YP_003536187.1| - 0.043 12.7 0.2 0.076 11.9 0.2 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 Methyltransf_17 PF12692.7 gi|292656290|ref|YP_003536187.1| - 0.095 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase ABC_tran PF00005.27 gi|292656291|ref|YP_003536188.1| - 2.7e-35 121.8 0.0 3.8e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|292656291|ref|YP_003536188.1| - 1.6e-09 37.5 0.0 6.7e-08 32.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292656291|ref|YP_003536188.1| - 2.5e-05 24.7 0.3 4e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|292656291|ref|YP_003536188.1| - 2.8e-05 23.8 0.1 4.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|292656291|ref|YP_003536188.1| - 2.9e-05 24.0 0.1 0.048 13.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|292656291|ref|YP_003536188.1| - 0.00038 20.7 0.1 0.0039 17.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|292656291|ref|YP_003536188.1| - 0.0011 18.8 0.1 0.0029 17.5 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|292656291|ref|YP_003536188.1| - 0.0014 18.8 0.7 0.011 15.9 0.7 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|292656291|ref|YP_003536188.1| - 0.0017 18.1 0.0 0.052 13.3 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|292656291|ref|YP_003536188.1| - 0.0021 18.6 0.0 0.015 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|292656291|ref|YP_003536188.1| - 0.0026 17.5 1.9 0.02 14.6 1.9 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|292656291|ref|YP_003536188.1| - 0.0055 16.6 0.2 0.17 11.8 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|292656291|ref|YP_003536188.1| - 0.0062 16.8 0.2 0.017 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|292656291|ref|YP_003536188.1| - 0.0072 15.6 0.3 0.017 14.4 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin T2SSE PF00437.20 gi|292656291|ref|YP_003536188.1| - 0.01 14.9 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|292656291|ref|YP_003536188.1| - 0.01 15.4 0.5 0.015 14.9 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|292656291|ref|YP_003536188.1| - 0.04 14.4 0.0 0.062 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|292656291|ref|YP_003536188.1| - 0.041 13.6 0.1 0.074 12.8 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase FtsK_SpoIIIE PF01580.18 gi|292656291|ref|YP_003536188.1| - 0.045 13.1 0.0 0.086 12.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|292656291|ref|YP_003536188.1| - 0.056 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|292656291|ref|YP_003536188.1| - 0.06 13.3 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|292656291|ref|YP_003536188.1| - 0.12 12.5 0.1 0.18 11.9 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase PIF1 PF05970.14 gi|292656291|ref|YP_003536188.1| - 0.2 10.8 0.0 0.38 9.9 0.0 1.4 1 1 1 2 2 2 0 PIF1-like helicase FtsX PF02687.21 gi|292656292|ref|YP_003536189.1| - 8.8e-08 32.5 15.1 2.3e-05 24.7 4.0 3.2 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|292656293|ref|YP_003536190.1| - 2.6e-19 70.4 9.3 4.7e-19 69.5 9.3 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|292656293|ref|YP_003536190.1| - 4.9e-05 23.7 5.6 4.9e-05 23.7 5.6 2.9 3 0 0 3 3 3 1 FtsX-like permease family DAGK_prokar PF01219.19 gi|292656294|ref|YP_003536191.1| - 0.026 14.3 1.2 0.037 13.8 1.2 1.2 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase Cellulose_synt PF03552.14 gi|292656294|ref|YP_003536191.1| - 0.25 9.8 1.4 0.26 9.7 1.4 1.0 1 0 0 1 1 1 0 Cellulose synthase DUF4350 PF14258.6 gi|292656295|ref|YP_003536192.1| - 1.9e-10 41.0 0.4 1.9e-10 41.0 0.4 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) Glyco_hydro_42M PF08532.10 gi|292656295|ref|YP_003536192.1| - 0.0082 15.7 0.0 1 8.8 0.0 2.3 2 0 0 2 2 2 2 Beta-galactosidase trimerisation domain ABC_transp_aux PF09822.9 gi|292656295|ref|YP_003536192.1| - 0.024 14.1 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.11 gi|292656296|ref|YP_003536193.1| - 1.3e-61 206.2 0.1 2.4e-61 205.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|292656296|ref|YP_003536193.1| - 8.6e-21 73.6 1.0 1.5e-20 72.8 1.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|292656296|ref|YP_003536193.1| - 2.3e-16 60.0 0.0 3.8e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|292656296|ref|YP_003536193.1| - 1.2e-07 31.1 0.0 1.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|292656296|ref|YP_003536193.1| - 3e-07 30.0 0.2 0.0049 16.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|292656296|ref|YP_003536193.1| - 8.3e-06 25.6 0.1 7.4e-05 22.5 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|292656296|ref|YP_003536193.1| - 2.4e-05 24.1 0.0 0.0003 20.5 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|292656296|ref|YP_003536193.1| - 5.8e-05 23.5 0.0 0.00016 22.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|292656296|ref|YP_003536193.1| - 0.0048 17.3 0.0 0.01 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 gi|292656296|ref|YP_003536193.1| - 0.039 14.1 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.18 gi|292656299|ref|YP_003536196.1| - 4.4e-21 75.0 0.1 6.8e-20 71.1 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function DUF58 PYC_OADA PF02436.18 gi|292656299|ref|YP_003536196.1| - 0.17 11.6 0.1 0.33 10.7 0.1 1.4 1 0 0 1 1 1 0 Conserved carboxylase domain DUF4129 PF13559.6 gi|292656300|ref|YP_003536197.1| - 4.8e-05 23.5 2.9 4.8e-05 23.5 2.9 3.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) Big_3_5 PF16640.5 gi|292656300|ref|YP_003536197.1| - 8.8e-05 22.6 3.1 8.8e-05 22.6 3.1 5.0 2 2 2 5 5 5 2 Bacterial Ig-like domain (group 3) CBM60 PF16841.5 gi|292656300|ref|YP_003536197.1| - 0.00052 20.4 1.9 0.068 13.6 0.0 3.7 2 1 1 3 3 3 1 Ca-dependent carbohydrate-binding module xylan-binding CarbopepD_reg_2 PF13715.6 gi|292656300|ref|YP_003536197.1| - 0.094 12.7 0.2 2 8.5 0.1 2.7 2 0 0 2 2 2 0 CarboxypepD_reg-like domain FAM184 PF15665.5 gi|292656300|ref|YP_003536197.1| - 0.6 9.9 3.8 0.93 9.2 3.8 1.1 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B DUF1616 PF07760.11 gi|292656301|ref|YP_003536198.1| - 1.9e-117 391.8 0.9 2.3e-117 391.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) HEM4 PF02602.15 gi|292656302|ref|YP_003536199.1| - 0.1 12.0 0.4 0.81 9.0 0.1 2.0 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD AAA_23 PF13476.6 gi|292656303|ref|YP_003536200.1| - 2.1e-12 48.0 0.0 2.1e-12 48.0 0.0 4.0 2 1 1 3 3 2 1 AAA domain Spc7 PF08317.11 gi|292656303|ref|YP_003536200.1| - 6.4e-10 38.4 53.8 0.0006 18.8 13.0 4.2 2 2 2 4 4 4 4 Spc7 kinetochore protein AAA_13 PF13166.6 gi|292656303|ref|YP_003536200.1| - 0.00012 20.9 22.4 0.0076 15.0 6.5 2.4 2 0 0 2 2 2 2 AAA domain Fzo_mitofusin PF04799.13 gi|292656303|ref|YP_003536200.1| - 0.00015 21.3 24.0 0.0009 18.8 1.1 5.3 4 1 0 5 5 5 2 fzo-like conserved region DUF4407 PF14362.6 gi|292656303|ref|YP_003536200.1| - 0.00018 21.0 40.0 0.023 14.1 5.2 3.3 1 1 2 3 3 3 3 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|292656303|ref|YP_003536200.1| - 0.00032 20.7 28.5 0.36 10.9 5.1 5.1 3 1 1 4 4 4 3 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.8 gi|292656303|ref|YP_003536200.1| - 0.00058 20.1 58.2 0.35 11.1 3.3 6.4 2 2 4 6 6 6 4 TATA element modulatory factor 1 TATA binding DUF5082 PF16888.5 gi|292656303|ref|YP_003536200.1| - 0.00071 19.8 30.9 0.61 10.4 0.2 5.8 2 2 2 4 4 4 2 Domain of unknown function (DUF5082) Atg14 PF10186.9 gi|292656303|ref|YP_003536200.1| - 0.0014 17.8 43.3 0.064 12.3 13.1 4.0 2 2 2 4 4 4 2 Vacuolar sorting 38 and autophagy-related subunit 14 DHR10 PF18595.1 gi|292656303|ref|YP_003536200.1| - 0.0028 17.7 11.1 0.0028 17.7 11.1 5.6 2 2 2 4 4 4 1 Designed helical repeat protein 10 domain SMC_N PF02463.19 gi|292656303|ref|YP_003536200.1| - 0.0031 17.0 0.3 0.037 13.5 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TPR_MLP1_2 PF07926.12 gi|292656303|ref|YP_003536200.1| - 0.0042 17.2 55.0 0.01 15.9 5.0 5.4 3 2 2 5 5 5 2 TPR/MLP1/MLP2-like protein NPV_P10 PF05531.12 gi|292656303|ref|YP_003536200.1| - 0.0066 16.9 17.4 1.6 9.2 0.3 5.5 3 2 2 5 5 5 1 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.9 gi|292656303|ref|YP_003536200.1| - 0.0095 16.0 17.3 0.0095 16.0 17.3 4.8 2 2 3 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|292656303|ref|YP_003536200.1| - 0.011 15.1 41.5 1.3 8.3 6.6 5.7 4 2 1 5 5 5 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 gi|292656303|ref|YP_003536200.1| - 0.014 15.7 27.5 0.8 10.0 1.6 5.4 4 2 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6_N PF17675.1 gi|292656303|ref|YP_003536200.1| - 0.026 15.0 72.2 0.17 12.4 17.8 5.0 2 2 2 4 4 4 0 Apg6 coiled-coil region Baculo_PEP_C PF04513.12 gi|292656303|ref|YP_003536200.1| - 0.026 14.5 14.0 1.9 8.5 0.6 4.6 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus HemX PF04375.14 gi|292656303|ref|YP_003536200.1| - 0.032 13.5 32.5 0.24 10.6 4.7 4.1 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase Seryl_tRNA_N PF02403.22 gi|292656303|ref|YP_003536200.1| - 0.058 13.6 44.9 0.26 11.5 5.1 4.7 3 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Phage_GP20 PF06810.11 gi|292656303|ref|YP_003536200.1| - 0.064 13.1 28.9 1.2 8.9 1.4 5.2 2 2 2 5 5 5 0 Phage minor structural protein GP20 Golgin_A5 PF09787.9 gi|292656303|ref|YP_003536200.1| - 0.066 12.7 55.5 0.071 12.6 19.1 3.2 2 1 0 3 3 3 0 Golgin subfamily A member 5 GAS PF13851.6 gi|292656303|ref|YP_003536200.1| - 0.081 12.3 45.7 0.088 12.2 9.1 4.8 3 2 1 4 4 4 0 Growth-arrest specific micro-tubule binding OmpH PF03938.14 gi|292656303|ref|YP_003536200.1| - 0.11 12.8 34.7 2.2 8.6 6.8 4.3 3 1 1 4 4 4 0 Outer membrane protein (OmpH-like) HMMR_N PF15905.5 gi|292656303|ref|YP_003536200.1| - 0.12 11.8 45.0 0.32 10.4 2.6 4.2 1 1 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal DUF4041 PF13250.6 gi|292656303|ref|YP_003536200.1| - 0.12 12.3 1.5 36 4.3 0.0 3.8 4 0 0 4 4 2 0 Domain of unknown function (DUF4041) T3SSipB PF16535.5 gi|292656303|ref|YP_003536200.1| - 0.13 12.8 19.4 2.2 8.7 5.0 4.1 1 1 1 3 3 3 0 Type III cell invasion protein SipB FapA PF03961.13 gi|292656303|ref|YP_003536200.1| - 0.2 10.2 28.0 0.48 9.0 4.9 3.7 1 1 3 4 4 4 0 Flagellar Assembly Protein A CENP-K PF11802.8 gi|292656303|ref|YP_003536200.1| - 0.29 10.7 24.4 0.025 14.1 6.8 3.0 2 1 0 2 2 2 0 Centromere-associated protein K FlaC_arch PF05377.11 gi|292656303|ref|YP_003536200.1| - 0.4 11.1 43.8 2.7 8.5 0.4 8.5 6 2 3 9 9 8 0 Flagella accessory protein C (FlaC) DUF4988 PF16378.5 gi|292656303|ref|YP_003536200.1| - 0.53 9.9 9.0 2.1 8.0 0.0 4.4 4 1 1 5 5 4 0 Domain of unknown function FliD_N PF02465.18 gi|292656303|ref|YP_003536200.1| - 0.88 10.3 13.5 42 4.9 3.3 5.2 3 1 1 4 4 3 0 Flagellar hook-associated protein 2 N-terminus Snapin_Pallidin PF14712.6 gi|292656303|ref|YP_003536200.1| - 1.1 9.7 33.3 0.87 10.0 0.8 6.1 3 2 3 6 6 6 0 Snapin/Pallidin Tropomyosin_1 PF12718.7 gi|292656303|ref|YP_003536200.1| - 1.1 9.3 61.9 0.06 13.5 4.7 5.4 2 2 3 5 5 4 0 Tropomyosin like MscS_porin PF12795.7 gi|292656303|ref|YP_003536200.1| - 1.2 8.7 50.0 7.4 6.0 12.3 4.8 3 1 1 4 4 4 0 Mechanosensitive ion channel porin domain DUF4201 PF13870.6 gi|292656303|ref|YP_003536200.1| - 1.3 8.7 38.5 0.43 10.3 2.2 5.4 3 2 2 5 5 5 0 Domain of unknown function (DUF4201) Prefoldin PF02996.17 gi|292656303|ref|YP_003536200.1| - 1.5 8.8 36.7 16 5.4 0.7 7.9 3 3 6 10 10 10 0 Prefoldin subunit ERM PF00769.19 gi|292656303|ref|YP_003536200.1| - 1.7 8.4 64.6 0.1 12.4 22.4 3.6 1 1 0 2 2 2 0 Ezrin/radixin/moesin family DUF948 PF06103.11 gi|292656303|ref|YP_003536200.1| - 1.8 8.9 12.8 31 4.9 0.2 4.9 4 1 0 4 4 4 0 Bacterial protein of unknown function (DUF948) BRE1 PF08647.11 gi|292656303|ref|YP_003536200.1| - 2.7 8.1 33.4 0.4 10.8 4.8 5.1 3 2 3 6 6 5 0 BRE1 E3 ubiquitin ligase MAD PF05557.13 gi|292656303|ref|YP_003536200.1| - 3 6.1 48.9 0.21 9.9 20.4 2.9 2 1 1 3 3 3 0 Mitotic checkpoint protein Syntaxin-6_N PF09177.11 gi|292656303|ref|YP_003536200.1| - 3.5 8.2 49.2 6.4 7.4 5.2 5.9 3 2 2 5 5 5 0 Syntaxin 6, N-terminal AAA_15 PF13175.6 gi|292656303|ref|YP_003536200.1| - 3.8 7.1 0.0 3.8 7.1 0.0 3.1 2 1 0 2 2 1 0 AAA ATPase domain FPP PF05911.11 gi|292656303|ref|YP_003536200.1| - 5.1 5.2 40.6 0.64 8.1 17.3 2.6 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil Scaffolding_pro PF11418.8 gi|292656303|ref|YP_003536200.1| - 5.2 7.7 12.5 1.1 9.9 0.8 3.7 2 2 1 4 4 3 0 Phi29 scaffolding protein DivIC PF04977.15 gi|292656303|ref|YP_003536200.1| - 5.5 6.8 58.0 0.21 11.4 2.0 8.9 4 3 6 10 10 9 0 Septum formation initiator COG2 PF06148.11 gi|292656303|ref|YP_003536200.1| - 6.4 6.9 38.9 1.5 8.9 4.3 6.6 2 2 5 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 KASH_CCD PF14662.6 gi|292656303|ref|YP_003536200.1| - 6.7 6.5 50.0 1.2 8.9 11.1 4.2 2 2 1 4 4 4 0 Coiled-coil region of CCDC155 or KASH Filament PF00038.21 gi|292656303|ref|YP_003536200.1| - 7.2 6.1 54.0 0.07 12.7 15.9 4.0 3 1 1 4 4 3 0 Intermediate filament protein HSBP1 PF06825.12 gi|292656303|ref|YP_003536200.1| - 7.7 6.5 20.1 5.3 7.0 0.1 6.0 6 0 0 6 6 5 0 Heat shock factor binding protein 1 ABC_tran_CTD PF16326.5 gi|292656303|ref|YP_003536200.1| - 7.7 6.8 61.9 0.037 14.3 12.6 6.9 3 3 3 6 6 5 0 ABC transporter C-terminal domain Vps54_N PF10475.9 gi|292656303|ref|YP_003536200.1| - 7.9 5.7 9.2 6.8 5.9 0.3 2.9 2 1 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Flagellin_C PF00700.21 gi|292656303|ref|YP_003536200.1| - 8.4 6.8 8.5 1.8 9.0 1.3 3.3 3 1 0 3 3 3 0 Bacterial flagellin C-terminal helical region DUF3584 PF12128.8 gi|292656303|ref|YP_003536200.1| - 8.5 3.7 49.2 0.44 8.0 16.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3584) YabA PF06156.13 gi|292656303|ref|YP_003536200.1| - 10 6.9 34.9 0.44 11.2 0.4 5.8 2 2 4 6 6 6 0 Initiation control protein YabA HalOD1 PF18545.1 gi|292656304|ref|YP_003536201.1| - 2e-15 56.8 0.4 2.3e-15 56.6 0.4 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 ThiS PF02597.20 gi|292656305|ref|YP_003536202.1| - 5.7e-17 62.1 0.1 6.8e-17 61.9 0.1 1.1 1 0 0 1 1 1 1 ThiS family DUF1952 PF09189.10 gi|292656306|ref|YP_003536203.1| - 0.0073 16.1 0.1 0.0092 15.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1952) AzlC PF03591.14 gi|292656308|ref|YP_003536205.1| - 5.4e-36 124.0 10.3 5.4e-36 124.0 10.3 1.9 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.12 gi|292656309|ref|YP_003536206.1| - 4.5e-25 87.7 8.7 5.1e-25 87.5 8.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) DUF2014 PF09427.10 gi|292656309|ref|YP_003536206.1| - 0.0055 16.1 0.4 0.0083 15.5 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2014) Phage_holin_8 PF16931.5 gi|292656310|ref|YP_003536207.1| - 1.7 8.6 10.5 0.39 10.7 1.5 3.0 3 0 0 3 3 3 0 Putative phage holin AFOR_C PF01314.18 gi|292656311|ref|YP_003536208.1| - 1.6e-111 373.0 2.4 2.1e-111 372.6 2.4 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|292656311|ref|YP_003536208.1| - 3.5e-73 245.7 0.3 5.1e-73 245.2 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Big_2 PF02368.18 gi|292656312|ref|YP_003536209.1| - 0.03 14.2 0.2 7.1 6.6 0.0 2.0 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 2) Toxin_32 PF08120.11 gi|292656313|ref|YP_003536210.1| - 0.22 11.4 5.0 0.36 10.7 5.0 1.5 1 1 0 1 1 1 0 Tamulustoxin family Radical_SAM PF04055.21 gi|292656315|ref|YP_003536212.1| - 0.00031 21.2 0.0 0.00052 20.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily GATase_5 PF13507.6 gi|292656316|ref|YP_003536213.1| - 1.1e-41 142.6 0.0 1.4e-41 142.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|292656316|ref|YP_003536213.1| - 3.9e-07 30.0 0.0 5.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|292656316|ref|YP_003536213.1| - 3.1e-05 23.9 0.0 3.8e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|292656316|ref|YP_003536213.1| - 0.00011 21.9 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|292656316|ref|YP_003536213.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 PurS PF02700.14 gi|292656317|ref|YP_003536214.1| - 1.2e-25 89.4 0.0 1.4e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GntP_permease PF02447.16 gi|292656318|ref|YP_003536215.1| - 4.2e-93 312.4 29.2 5.2e-93 312.1 29.2 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|292656318|ref|YP_003536215.1| - 1.2e-11 44.4 38.9 1.2e-11 44.4 38.9 2.1 2 1 0 2 2 2 1 Citrate transporter Formyl_trans_N PF00551.19 gi|292656319|ref|YP_003536216.1| - 4.5e-41 140.6 0.0 6.3e-41 140.1 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|292656319|ref|YP_003536216.1| - 3.2e-07 30.2 0.2 7.7e-07 29.0 0.2 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|292656319|ref|YP_003536216.1| - 3.3e-06 26.7 0.1 1.2e-05 24.9 0.1 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|292656319|ref|YP_003536216.1| - 0.0008 20.0 0.1 0.0026 18.3 0.1 1.8 1 0 0 1 1 1 1 ACT domain TMV_coat PF00721.21 gi|292656319|ref|YP_003536216.1| - 0.19 11.6 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Virus coat protein (TMV like) DUF3422 PF11902.8 gi|292656320|ref|YP_003536217.1| - 0.2 10.8 0.2 0.23 10.6 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3422) SAICAR_synt PF01259.18 gi|292656321|ref|YP_003536218.1| - 2.6e-24 86.2 0.0 6.3e-24 85.0 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase SIR2 PF02146.17 gi|292656322|ref|YP_003536219.1| - 2.3e-45 154.7 0.0 2.7e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|292656322|ref|YP_003536219.1| - 0.0032 17.2 0.0 0.019 14.7 0.0 2.1 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.10 gi|292656322|ref|YP_003536219.1| - 0.015 15.4 1.3 0.039 14.1 1.3 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|292656322|ref|YP_003536219.1| - 0.065 13.4 0.5 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-IS66 PF13005.7 gi|292656322|ref|YP_003536219.1| - 0.18 12.2 1.6 3.5 8.1 0.3 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PAS_4 PF08448.10 gi|292656323|ref|YP_003536220.1| - 2.4e-10 40.6 2.2 3e-10 40.3 0.3 2.3 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|292656323|ref|YP_003536220.1| - 1e-09 38.2 1.3 1e-09 38.2 1.3 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|292656323|ref|YP_003536220.1| - 2.1e-09 37.6 0.0 5.2e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|292656323|ref|YP_003536220.1| - 2.2e-08 34.1 0.0 5.5e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|292656323|ref|YP_003536220.1| - 2.1e-07 31.3 2.3 2.3e-07 31.2 0.5 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|292656323|ref|YP_003536220.1| - 2.2e-07 31.0 0.0 5.5e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|292656323|ref|YP_003536220.1| - 1.6e-06 27.9 0.1 4.8e-06 26.5 0.1 1.8 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|292656323|ref|YP_003536220.1| - 7.7e-05 23.0 0.1 0.00027 21.3 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|292656323|ref|YP_003536220.1| - 8.5e-05 23.2 0.1 0.00032 21.3 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|292656323|ref|YP_003536220.1| - 0.037 14.2 0.9 0.14 12.3 0.1 2.4 2 0 0 2 2 2 0 PAS fold HATPase_c PF02518.26 gi|292656324|ref|YP_003536221.1| - 1.3e-13 51.4 0.2 1.6e-13 51.2 0.2 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|292656324|ref|YP_003536221.1| - 0.074 13.0 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|292656324|ref|YP_003536221.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF5518 PF17647.1 gi|292656325|ref|YP_003536222.1| - 1.8e-14 53.9 32.9 2.5e-14 53.5 32.9 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) ApbA PF02558.16 gi|292656325|ref|YP_003536222.1| - 0.14 11.8 0.6 0.23 11.1 0.6 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Gp5_OB PF06714.11 gi|292656325|ref|YP_003536222.1| - 1.4 9.2 4.4 0.27 11.4 0.7 1.6 2 0 0 2 2 2 0 Gp5 N-terminal OB domain Radical_SAM PF04055.21 gi|292656326|ref|YP_003536223.1| - 4.3e-14 53.2 0.1 1.1e-13 51.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily YdjM PF04307.14 gi|292656327|ref|YP_003536224.1| - 0.00042 19.7 16.2 0.0042 16.4 16.2 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase YdjM PF04307.14 gi|292656328|ref|YP_003536225.1| - 0.18 11.1 16.8 1.3 8.3 15.5 2.5 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase Radical_SAM PF04055.21 gi|292656329|ref|YP_003536226.1| - 1.2e-15 58.2 0.0 2.4e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily TetR_C_34 PF17929.1 gi|292656329|ref|YP_003536226.1| - 0.13 12.4 0.1 8 6.6 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CofC PF01983.16 gi|292656330|ref|YP_003536227.1| - 8.1e-37 126.5 0.0 9.5e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|292656330|ref|YP_003536227.1| - 0.0084 16.5 4.7 0.01 16.2 4.2 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain TMEM154 PF15102.6 gi|292656331|ref|YP_003536228.1| - 0.093 12.6 0.1 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 TMEM154 protein family DUF4398 PF14346.6 gi|292656331|ref|YP_003536228.1| - 0.28 11.8 9.8 0.9 10.2 9.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) Tubulin PF00091.25 gi|292656332|ref|YP_003536229.1| - 5.3e-27 95.3 0.0 1.2e-26 94.2 0.0 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|292656332|ref|YP_003536229.1| - 0.009 15.2 0.1 0.015 14.5 0.1 1.5 1 0 0 1 1 1 1 Tubulin like NAD_binding_10 PF13460.6 gi|292656333|ref|YP_003536230.1| - 4.3e-28 98.4 0.0 6.2e-28 97.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|292656333|ref|YP_003536230.1| - 1.3e-19 70.7 0.0 1.1e-18 67.6 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292656333|ref|YP_003536230.1| - 1.1e-14 54.2 0.0 5e-13 48.7 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|292656333|ref|YP_003536230.1| - 4e-13 49.1 0.0 1.7e-07 30.6 0.0 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|292656333|ref|YP_003536230.1| - 4.9e-09 36.1 0.0 6.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|292656333|ref|YP_003536230.1| - 2.2e-06 27.3 0.0 5.7e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|292656333|ref|YP_003536230.1| - 3.7e-05 23.0 0.1 0.00033 19.9 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|292656333|ref|YP_003536230.1| - 9.3e-05 21.7 0.0 0.088 12.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|292656333|ref|YP_003536230.1| - 0.0011 19.2 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|292656333|ref|YP_003536230.1| - 0.006 16.1 0.0 0.0086 15.5 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Pyr_redox PF00070.27 gi|292656333|ref|YP_003536230.1| - 0.043 14.4 0.0 0.088 13.4 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|292656333|ref|YP_003536230.1| - 0.055 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.10 gi|292656333|ref|YP_003536230.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 KR domain 2-Hacid_dh_C PF02826.19 gi|292656333|ref|YP_003536230.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|292656333|ref|YP_003536230.1| - 0.18 12.0 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Thymidylate_kin PF02223.17 gi|292656335|ref|YP_003536232.1| - 4.8e-37 127.4 0.0 5.7e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|292656335|ref|YP_003536232.1| - 3.4e-06 27.3 0.0 7.9e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|292656335|ref|YP_003536232.1| - 3.3e-05 23.8 0.0 8.2e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|292656335|ref|YP_003536232.1| - 0.00018 22.0 0.0 0.00038 21.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|292656335|ref|YP_003536232.1| - 0.0024 18.1 0.5 0.0038 17.5 0.5 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|292656335|ref|YP_003536232.1| - 0.05 14.0 0.0 9.3 6.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|292656335|ref|YP_003536232.1| - 0.079 13.3 0.1 0.14 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|292656335|ref|YP_003536232.1| - 0.13 12.6 0.0 1.2 9.3 0.0 2.3 2 2 0 2 2 2 0 AAA domain VirE PF05272.11 gi|292656335|ref|YP_003536232.1| - 0.17 11.6 0.0 2.4 7.9 0.0 2.5 2 1 0 2 2 2 0 Virulence-associated protein E AAA_5 PF07728.14 gi|292656335|ref|YP_003536232.1| - 0.18 11.8 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MASE4 PF17158.4 gi|292656336|ref|YP_003536233.1| - 0.13 11.5 6.8 0.15 11.3 5.4 1.6 2 0 0 2 2 2 0 Membrane-associated sensor, integral membrane domain E1_dh PF00676.20 gi|292656337|ref|YP_003536234.1| - 5.2e-74 248.9 0.0 6.2e-74 248.6 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.21 gi|292656337|ref|YP_003536234.1| - 0.00029 19.9 0.0 0.00044 19.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|292656337|ref|YP_003536234.1| - 0.00043 19.6 0.0 0.00074 18.8 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|292656337|ref|YP_003536234.1| - 0.0027 17.5 1.5 0.067 13.0 1.0 2.8 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AsnC_trans_reg PF01037.21 gi|292656338|ref|YP_003536235.1| - 1.6e-08 34.4 0.1 1.8e-08 34.2 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|292656339|ref|YP_003536236.1| - 5.7e-23 81.4 0.5 9.2e-23 80.7 0.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|292656339|ref|YP_003536236.1| - 1.3e-09 37.7 2.0 1.1e-08 34.8 0.2 2.3 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|292656339|ref|YP_003536236.1| - 1.3e-06 28.1 0.0 2.8e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|292656339|ref|YP_003536236.1| - 3.5e-05 23.2 0.2 6e-05 22.4 0.2 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|292656339|ref|YP_003536236.1| - 0.00024 20.8 0.1 0.00044 19.9 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|292656339|ref|YP_003536236.1| - 0.00024 21.5 0.6 0.00042 20.7 0.2 1.7 2 0 0 2 2 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|292656339|ref|YP_003536236.1| - 0.00031 20.7 0.1 0.00055 19.9 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|292656339|ref|YP_003536236.1| - 0.00051 19.4 0.0 0.00057 19.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|292656339|ref|YP_003536236.1| - 0.0028 17.3 0.3 0.0031 17.2 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|292656339|ref|YP_003536236.1| - 0.0033 17.6 0.1 0.0061 16.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|292656339|ref|YP_003536236.1| - 0.0036 17.5 0.1 0.18 11.9 0.0 2.8 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|292656339|ref|YP_003536236.1| - 0.0085 16.3 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|292656339|ref|YP_003536236.1| - 0.009 15.6 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|292656339|ref|YP_003536236.1| - 0.013 16.0 0.6 0.038 14.5 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|292656339|ref|YP_003536236.1| - 0.028 13.8 0.1 0.061 12.7 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|292656339|ref|YP_003536236.1| - 0.036 13.3 0.2 0.052 12.8 0.2 1.4 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|292656339|ref|YP_003536236.1| - 0.051 14.2 0.2 0.17 12.5 0.1 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|292656339|ref|YP_003536236.1| - 0.054 12.6 0.1 0.088 11.9 0.1 1.4 1 1 0 1 1 1 0 FAD binding domain GFO_IDH_MocA PF01408.22 gi|292656339|ref|YP_003536236.1| - 0.09 13.6 0.1 0.24 12.3 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AsnC_trans_reg PF01037.21 gi|292656340|ref|YP_003536237.1| - 2.6e-09 36.9 0.1 3e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|292656340|ref|YP_003536237.1| - 0.075 13.0 0.2 0.088 12.8 0.2 1.2 1 0 0 1 1 1 0 GYD domain Arteri_nucleo PF01481.16 gi|292656341|ref|YP_003536238.1| - 0.22 11.8 0.0 0.35 11.2 0.0 1.2 1 0 0 1 1 1 0 Arterivirus nucleocapsid protein MCPsignal PF00015.21 gi|292656342|ref|YP_003536239.1| - 1.1e-36 126.2 51.0 2.8e-36 124.9 26.2 4.3 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|292656342|ref|YP_003536239.1| - 1e-10 41.8 2.9 1e-10 41.8 2.9 6.1 5 0 0 5 5 5 2 HAMP domain DUF1664 PF07889.12 gi|292656342|ref|YP_003536239.1| - 0.0035 17.4 12.9 1.6 8.8 0.7 4.8 2 2 3 5 5 5 2 Protein of unknown function (DUF1664) HMMR_N PF15905.5 gi|292656342|ref|YP_003536239.1| - 0.028 13.9 2.7 0.71 9.3 0.0 2.4 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Baculo_PEP_C PF04513.12 gi|292656342|ref|YP_003536239.1| - 0.046 13.8 5.1 4.4 7.3 0.2 4.2 2 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|292656342|ref|YP_003536239.1| - 0.048 12.5 15.1 0.35 9.7 0.2 3.4 1 1 4 5 5 5 0 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|292656342|ref|YP_003536239.1| - 0.089 13.1 10.9 11 6.4 0.1 4.6 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|292656342|ref|YP_003536239.1| - 0.092 11.4 13.7 0.012 14.3 1.8 2.1 1 1 1 2 2 2 0 AAA domain IFT57 PF10498.9 gi|292656342|ref|YP_003536239.1| - 0.21 10.5 3.5 41 3.0 0.0 4.0 3 2 2 5 5 5 0 Intra-flagellar transport protein 57 DUF5542 PF17696.1 gi|292656342|ref|YP_003536239.1| - 0.22 11.7 1.6 11 6.3 0.1 3.0 2 0 0 2 2 2 0 Family of unknown function (DUF5542) DUF948 PF06103.11 gi|292656342|ref|YP_003536239.1| - 0.77 10.1 32.5 0.98 9.7 1.6 6.2 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF948) Flagellin_C PF00700.21 gi|292656342|ref|YP_003536239.1| - 0.89 10.0 7.8 6.7 7.1 1.0 3.2 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region WXG100 PF06013.12 gi|292656342|ref|YP_003536239.1| - 1 9.6 34.3 5.3 7.3 4.4 6.8 2 1 4 6 6 6 0 Proteins of 100 residues with WXG NPV_P10 PF05531.12 gi|292656342|ref|YP_003536239.1| - 1.2 9.7 10.5 4.9 7.7 0.4 4.3 3 2 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.11 gi|292656342|ref|YP_003536239.1| - 1.7 9.2 12.9 9.3 6.9 0.1 4.7 1 1 2 4 4 4 0 Syntaxin 6, N-terminal FlaC_arch PF05377.11 gi|292656342|ref|YP_003536239.1| - 2.1 8.8 7.9 17 5.9 0.1 4.6 5 2 0 5 5 4 0 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|292656342|ref|YP_003536239.1| - 2.8 8.0 23.4 4.1 7.4 2.2 4.9 1 1 2 4 4 4 0 Laminin Domain II LXG PF04740.12 gi|292656342|ref|YP_003536239.1| - 3.6 7.3 8.4 11 5.6 0.3 3.6 2 2 2 4 4 4 0 LXG domain of WXG superfamily Bacteriocin_IIc PF10439.9 gi|292656343|ref|YP_003536240.1| - 0.088 12.9 11.5 0.1 12.8 11.5 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Kinocilin PF15033.6 gi|292656343|ref|YP_003536240.1| - 1.2 8.8 5.9 1.3 8.7 5.9 1.1 1 0 0 1 1 1 0 Kinocilin protein LapA_dom PF06305.11 gi|292656343|ref|YP_003536240.1| - 3.6 7.5 4.9 7.1 6.5 4.9 1.7 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain QWRF PF04484.12 gi|292656344|ref|YP_003536241.1| - 0.078 12.7 0.2 0.079 12.7 0.2 1.0 1 0 0 1 1 1 0 QWRF family Fer4_15 PF13459.6 gi|292656345|ref|YP_003536242.1| - 0.00011 22.8 1.2 0.00016 22.4 0.9 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|292656345|ref|YP_003536242.1| - 0.0012 19.4 0.4 0.002 18.7 0.4 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I SBP_bac_8 PF13416.6 gi|292656347|ref|YP_003536244.1| - 1.7e-43 149.5 0.0 4.7e-43 148.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein MCPsignal PF00015.21 gi|292656347|ref|YP_003536244.1| - 3.8e-41 140.7 39.6 1.3e-38 132.5 21.1 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_1 PF01547.25 gi|292656347|ref|YP_003536244.1| - 1.2e-29 104.3 0.8 1.2e-29 104.3 0.8 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF948 PF06103.11 gi|292656347|ref|YP_003536244.1| - 0.004 17.4 19.9 0.076 13.3 0.3 4.9 2 1 1 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF489 PF04356.12 gi|292656347|ref|YP_003536244.1| - 0.0054 16.8 2.2 0.038 14.0 0.2 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF489) BLOC1_2 PF10046.9 gi|292656347|ref|YP_003536244.1| - 0.024 14.9 10.1 7.8 6.9 0.6 5.1 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|292656347|ref|YP_003536244.1| - 0.061 12.3 2.0 1 8.3 0.1 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Not3 PF04065.15 gi|292656347|ref|YP_003536244.1| - 0.066 12.6 7.1 0.23 10.9 0.3 2.5 2 1 1 3 3 2 0 Not1 N-terminal domain, CCR4-Not complex component Syntaxin-6_N PF09177.11 gi|292656347|ref|YP_003536244.1| - 0.097 13.2 10.8 0.067 13.7 2.7 3.0 2 1 0 2 2 2 0 Syntaxin 6, N-terminal Prominin PF05478.11 gi|292656347|ref|YP_003536244.1| - 0.11 10.5 1.9 1.3 6.8 2.4 2.0 1 1 0 1 1 1 0 Prominin WXG100 PF06013.12 gi|292656347|ref|YP_003536244.1| - 0.12 12.6 20.7 1.4 9.2 0.1 5.5 2 2 2 5 5 5 0 Proteins of 100 residues with WXG DUF3450 PF11932.8 gi|292656347|ref|YP_003536244.1| - 0.13 11.6 13.2 0.41 9.9 0.8 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) RmuC PF02646.16 gi|292656347|ref|YP_003536244.1| - 0.18 10.9 3.3 9 5.3 0.2 3.0 2 1 0 2 2 2 0 RmuC family EzrA PF06160.12 gi|292656347|ref|YP_003536244.1| - 0.2 9.8 6.1 0.29 9.3 0.8 2.3 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|292656347|ref|YP_003536244.1| - 0.22 11.6 20.4 0.29 11.2 1.1 3.6 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 gi|292656347|ref|YP_003536244.1| - 0.56 10.2 9.7 0.34 10.9 3.1 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus SIKE PF05769.11 gi|292656347|ref|YP_003536244.1| - 0.66 9.9 6.3 1.5 8.7 0.2 2.7 2 1 0 2 2 2 0 SIKE family ERM PF00769.19 gi|292656347|ref|YP_003536244.1| - 0.93 9.3 19.1 2.4 7.9 4.8 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family TMPIT PF07851.13 gi|292656347|ref|YP_003536244.1| - 1.3 8.2 3.4 5.3 6.2 0.1 2.4 2 1 1 3 3 3 0 TMPIT-like protein NPV_P10 PF05531.12 gi|292656347|ref|YP_003536244.1| - 1.3 9.5 16.5 25 5.4 0.3 5.4 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|292656347|ref|YP_003536244.1| - 1.5 8.7 5.6 17 5.3 0.1 3.7 3 2 2 5 5 4 0 Sec34-like family Spc7 PF08317.11 gi|292656347|ref|YP_003536244.1| - 1.8 7.4 13.6 2.6 6.8 3.1 2.5 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|292656347|ref|YP_003536244.1| - 2.6 8.1 12.1 6.1 6.9 1.6 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) Jnk-SapK_ap_N PF09744.9 gi|292656347|ref|YP_003536244.1| - 2.9 8.1 7.1 6.1 7.1 0.6 2.8 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 COG2 PF06148.11 gi|292656347|ref|YP_003536244.1| - 3.8 7.6 9.6 15 5.7 0.1 3.9 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.12 gi|292656347|ref|YP_003536244.1| - 7.3 6.6 20.2 1.5 8.9 1.8 4.4 1 1 2 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|292656347|ref|YP_003536244.1| - 7.9 6.8 12.5 6.6 7.0 1.3 4.2 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 gi|292656347|ref|YP_003536244.1| - 9.3 4.7 13.5 1.5 7.4 5.1 1.9 1 1 0 2 2 2 0 AAA domain ApoLp-III PF07464.11 gi|292656347|ref|YP_003536244.1| - 9.9 6.3 14.8 1.3 9.1 5.6 2.9 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Pro_isomerase PF00160.21 gi|292656349|ref|YP_003536246.1| - 2.5e-50 170.8 0.0 2.8e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SBF PF01758.16 gi|292656350|ref|YP_003536247.1| - 8.4e-39 133.3 14.1 1.6e-38 132.4 12.6 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family Mem_trans PF03547.18 gi|292656350|ref|YP_003536247.1| - 0.61 8.4 13.3 0.028 12.8 6.1 2.3 3 0 0 3 3 3 0 Membrane transport protein DUF2892 PF11127.8 gi|292656351|ref|YP_003536248.1| - 3e-12 46.4 6.0 7.2e-12 45.2 6.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) Phage_holin_3_6 PF07332.11 gi|292656351|ref|YP_003536248.1| - 1.9 8.5 8.7 2.5 8.2 8.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III AstE_AspA PF04952.14 gi|292656352|ref|YP_003536249.1| - 1.7e-33 115.9 0.0 2.2e-33 115.6 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Glycos_transf_3 PF00591.21 gi|292656353|ref|YP_003536250.1| - 1.3e-30 106.9 0.0 3e-30 105.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|292656353|ref|YP_003536250.1| - 7.3e-07 29.0 0.5 7.3e-07 29.0 0.5 2.6 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain DUF455 PF04305.14 gi|292656353|ref|YP_003536250.1| - 0.0096 15.5 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF455) DUF3072 PF11272.8 gi|292656353|ref|YP_003536250.1| - 0.33 10.9 2.3 56 3.7 0.6 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3072) AsnC_trans_reg2 PF17805.1 gi|292656354|ref|YP_003536251.1| - 6.2e-45 151.3 0.0 7.6e-23 80.5 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|292656354|ref|YP_003536251.1| - 5.8e-06 26.0 2.6 0.0005 19.8 0.3 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292656354|ref|YP_003536251.1| - 0.034 13.7 0.0 3.5 7.3 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PHP_C PF13263.6 gi|292656355|ref|YP_003536252.1| - 2.9e-23 81.4 0.4 7.8e-23 80.0 0.3 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|292656355|ref|YP_003536252.1| - 2.6e-06 27.8 0.0 2.9e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 PHP domain NAD_binding_8 PF13450.6 gi|292656356|ref|YP_003536253.1| - 4.2e-17 62.1 1.3 1e-16 60.9 1.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|292656356|ref|YP_003536253.1| - 1.9e-15 57.1 6.3 2.6e-08 33.6 1.2 2.1 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 gi|292656356|ref|YP_003536253.1| - 8.9e-07 28.8 6.0 8.9e-07 28.8 6.0 1.7 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|292656356|ref|YP_003536253.1| - 5.9e-06 25.9 0.6 7.9e-06 25.5 0.6 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292656356|ref|YP_003536253.1| - 1.1e-05 24.8 0.9 8.7e-05 21.9 0.2 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292656356|ref|YP_003536253.1| - 9.5e-05 21.6 2.0 9.5e-05 21.6 2.0 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|292656356|ref|YP_003536253.1| - 0.00054 18.8 0.9 0.00094 18.0 0.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|292656356|ref|YP_003536253.1| - 0.00057 19.2 0.4 0.00083 18.7 0.4 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|292656356|ref|YP_003536253.1| - 0.00068 19.0 0.9 0.0011 18.3 0.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|292656356|ref|YP_003536253.1| - 0.00084 18.5 3.0 0.0067 15.6 1.8 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.16 gi|292656356|ref|YP_003536253.1| - 0.001 18.7 0.2 0.013 15.1 0.2 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|292656356|ref|YP_003536253.1| - 0.0013 18.0 0.2 0.0022 17.3 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|292656356|ref|YP_003536253.1| - 0.0062 17.1 0.5 0.049 14.2 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|292656356|ref|YP_003536253.1| - 0.019 14.9 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|292656356|ref|YP_003536253.1| - 0.031 14.3 0.5 0.27 11.2 0.5 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|292656356|ref|YP_003536253.1| - 0.031 14.7 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|292656356|ref|YP_003536253.1| - 0.053 13.8 0.1 0.2 11.9 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|292656356|ref|YP_003536253.1| - 0.063 12.6 0.5 0.099 11.9 0.5 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|292656356|ref|YP_003536253.1| - 0.16 10.9 0.2 0.28 10.2 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein HAD_2 PF13419.6 gi|292656357|ref|YP_003536254.1| - 5.9e-13 49.3 0.0 9.2e-13 48.7 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292656357|ref|YP_003536254.1| - 1.6e-10 40.9 0.4 6.2e-10 39.0 0.0 2.2 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|292656357|ref|YP_003536254.1| - 3e-07 30.9 0.4 6.2e-05 23.4 0.0 2.4 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HTH_31 PF13560.6 gi|292656357|ref|YP_003536254.1| - 5e-05 23.6 0.2 0.041 14.2 0.0 2.7 2 1 0 2 2 2 2 Helix-turn-helix domain HAD PF12710.7 gi|292656357|ref|YP_003536254.1| - 0.0087 16.5 1.0 0.014 15.8 1.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Aldo_ket_red PF00248.21 gi|292656358|ref|YP_003536255.1| - 2.8e-57 194.2 0.0 1.7e-55 188.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ATPase PF06745.13 gi|292656359|ref|YP_003536256.1| - 2.5e-43 148.1 0.0 2.8e-43 147.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|292656359|ref|YP_003536256.1| - 3.6e-06 26.7 0.0 6.7e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|292656359|ref|YP_003536256.1| - 2.1e-05 23.4 0.0 9.3e-05 21.2 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|292656359|ref|YP_003536256.1| - 0.00032 20.5 0.0 0.00064 19.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RecA PF00154.21 gi|292656359|ref|YP_003536256.1| - 0.00078 19.0 0.0 0.0041 16.6 0.0 1.9 2 0 0 2 2 2 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|292656359|ref|YP_003536256.1| - 0.001 18.9 0.0 0.0026 17.6 0.0 1.6 2 0 0 2 2 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.6 gi|292656359|ref|YP_003536256.1| - 0.0011 18.9 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|292656359|ref|YP_003536256.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|292656359|ref|YP_003536256.1| - 0.0038 17.0 0.0 0.018 14.7 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|292656359|ref|YP_003536256.1| - 0.0049 17.2 0.2 0.019 15.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|292656359|ref|YP_003536256.1| - 0.0084 16.5 0.0 0.011 16.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292656359|ref|YP_003536256.1| - 0.0096 16.1 0.1 0.02 15.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292656359|ref|YP_003536256.1| - 0.011 16.2 0.0 0.018 15.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|292656359|ref|YP_003536256.1| - 0.02 15.1 0.0 0.08 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|292656359|ref|YP_003536256.1| - 0.022 15.2 0.1 0.05 14.0 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292656359|ref|YP_003536256.1| - 0.033 14.2 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|292656359|ref|YP_003536256.1| - 0.044 13.7 0.0 0.071 13.0 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|292656359|ref|YP_003536256.1| - 0.054 13.2 0.1 0.15 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|292656359|ref|YP_003536256.1| - 0.059 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|292656359|ref|YP_003536256.1| - 0.061 13.2 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DAP3 PF10236.9 gi|292656359|ref|YP_003536256.1| - 0.071 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.6 gi|292656359|ref|YP_003536256.1| - 0.093 13.3 0.1 0.14 12.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|292656359|ref|YP_003536256.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|292656359|ref|YP_003536256.1| - 0.13 11.9 0.0 0.27 10.8 0.0 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|292656359|ref|YP_003536256.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SelR PF01641.18 gi|292656361|ref|YP_003536258.1| - 1.3e-51 173.8 0.1 1.4e-51 173.6 0.1 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|292656361|ref|YP_003536258.1| - 0.0024 17.6 0.0 0.49 10.2 0.0 2.3 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein Yippee-Mis18 PF03226.14 gi|292656361|ref|YP_003536258.1| - 0.0094 16.2 0.1 0.018 15.3 0.1 1.5 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.7 gi|292656361|ref|YP_003536258.1| - 0.1 12.6 1.5 1.1 9.4 0.0 2.4 2 1 0 2 2 2 0 Double zinc ribbon HECT_2 PF09814.9 gi|292656361|ref|YP_003536258.1| - 0.11 11.3 0.1 3.3 6.5 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Ribosomal_L37e PF01907.19 gi|292656361|ref|YP_003536258.1| - 1.2 9.3 3.5 0.59 10.3 0.3 1.9 2 0 0 2 2 2 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|292656361|ref|YP_003536258.1| - 3.6 7.2 9.3 7.4 6.2 0.1 3.1 3 1 0 3 3 3 0 TFIIB zinc-binding DUF3017 PF11222.8 gi|292656362|ref|YP_003536259.1| - 0.042 14.1 4.5 0.071 13.4 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) HTH_5 PF01022.20 gi|292656363|ref|YP_003536260.1| - 1.2e-07 31.4 0.1 1.7e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292656363|ref|YP_003536260.1| - 2.2e-06 27.6 0.3 4.5e-06 26.6 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|292656363|ref|YP_003536260.1| - 6.9e-05 22.8 0.3 8.1e-05 22.5 0.3 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix SBP_bac_8 PF13416.6 gi|292656364|ref|YP_003536261.1| - 0.073 12.9 0.1 0.084 12.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Usp PF00582.26 gi|292656366|ref|YP_003536263.1| - 5.6e-32 111.2 2.5 6.2e-32 111.0 2.5 1.0 1 0 0 1 1 1 1 Universal stress protein family HHH_5 PF14520.6 gi|292656367|ref|YP_003536264.1| - 2.2e-06 28.2 0.0 4.5e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|292656367|ref|YP_003536264.1| - 0.00038 20.7 0.3 0.0016 18.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH_2 PF12826.7 gi|292656367|ref|YP_003536264.1| - 0.04 14.0 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|292656367|ref|YP_003536264.1| - 0.084 13.1 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|292656367|ref|YP_003536264.1| - 0.088 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HTH_23 PF13384.6 gi|292656367|ref|YP_003536264.1| - 0.12 12.2 0.5 0.23 11.3 0.5 1.4 1 0 0 1 1 1 0 Homeodomain-like domain eIF-5_eIF-2B PF01873.17 gi|292656369|ref|YP_003536266.1| - 4e-30 104.1 0.0 5.7e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|292656369|ref|YP_003536266.1| - 9.7e-08 31.9 0.3 1.6e-07 31.2 0.3 1.4 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|292656369|ref|YP_003536266.1| - 0.096 13.1 0.4 2.6 8.5 0.5 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|292656369|ref|YP_003536266.1| - 0.18 12.0 1.5 3 8.0 1.6 2.2 1 1 2 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|292656369|ref|YP_003536266.1| - 0.69 9.6 2.9 12 5.7 3.5 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Transgly_assoc PF04226.13 gi|292656370|ref|YP_003536267.1| - 0.0059 16.8 1.5 0.0085 16.3 1.5 1.3 1 0 0 1 1 1 1 Transglycosylase associated protein FAA_hydrolase PF01557.18 gi|292656371|ref|YP_003536268.1| - 2.3e-45 154.9 0.0 2.8e-45 154.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|292656371|ref|YP_003536268.1| - 0.65 10.9 2.6 1.9 9.5 0.7 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF2437) PhoD_N PF16655.5 gi|292656373|ref|YP_003536270.1| - 0.18 12.4 0.2 0.2 12.2 0.2 1.2 1 0 0 1 1 1 0 PhoD-like phosphatase, N-terminal domain Ion_trans_2 PF07885.16 gi|292656374|ref|YP_003536271.1| - 1.2e-17 63.6 6.0 2.9e-17 62.4 3.8 2.3 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|292656374|ref|YP_003536271.1| - 3.1e-16 59.4 11.0 4.1e-16 59.0 11.0 1.1 1 0 0 1 1 1 1 Ion transport protein zf-ribbon_3 PF13248.6 gi|292656374|ref|YP_003536271.1| - 0.021 14.3 4.1 0.04 13.3 4.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|292656374|ref|YP_003536271.1| - 0.054 13.5 0.2 0.086 12.9 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon TSR PF18487.1 gi|292656374|ref|YP_003536271.1| - 0.076 13.2 1.7 0.13 12.5 1.7 1.3 1 0 0 1 1 1 0 Thrombospondin type 1 repeat HypA PF01155.19 gi|292656374|ref|YP_003536271.1| - 0.13 12.3 1.1 0.19 11.8 0.5 1.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|292656374|ref|YP_003536271.1| - 0.19 11.9 2.4 0.38 11.0 2.4 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|292656374|ref|YP_003536271.1| - 0.4 10.2 1.3 7.6 6.1 1.4 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|292656374|ref|YP_003536271.1| - 1.2 9.1 2.8 19 5.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Xan_ur_permease PF00860.20 gi|292656376|ref|YP_003536273.1| - 2.1e-87 293.4 44.7 2.9e-87 292.9 44.7 1.2 1 0 0 1 1 1 1 Permease family MFS_MOT1 PF16983.5 gi|292656376|ref|YP_003536273.1| - 3.7 8.0 32.1 0.27 11.6 7.7 4.0 2 1 1 3 3 3 0 Molybdate transporter of MFS superfamily Pribosyltran PF00156.27 gi|292656377|ref|YP_003536274.1| - 1e-16 60.9 1.7 1.3e-16 60.5 1.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|292656377|ref|YP_003536274.1| - 0.00095 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|292656377|ref|YP_003536274.1| - 0.048 13.2 0.2 0.078 12.5 0.2 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase ASRT PF07100.11 gi|292656377|ref|YP_003536274.1| - 0.15 12.1 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer Lactate_perm PF02652.14 gi|292656378|ref|YP_003536275.1| - 5.8e-93 312.4 29.4 6e-92 309.1 29.4 1.9 1 1 0 1 1 1 1 L-lactate permease COX2 PF00116.20 gi|292656380|ref|YP_003536277.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain H2O2_YaaD PF03883.14 gi|292656381|ref|YP_003536278.1| - 0.0025 17.4 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 Peroxide stress protein YaaA SSFA2_C PF14723.6 gi|292656381|ref|YP_003536278.1| - 0.0066 16.4 0.0 0.0091 15.9 0.0 1.2 1 0 0 1 1 1 1 Sperm-specific antigen 2 C-terminus DUF262 PF03235.14 gi|292656383|ref|YP_003536280.1| - 1.2e-15 58.4 11.1 1.1e-14 55.2 11.0 2.4 1 1 0 1 1 1 1 Protein of unknown function DUF262 HNH PF01844.23 gi|292656383|ref|YP_003536280.1| - 2.7e-06 27.4 0.9 5.7e-06 26.4 0.9 1.6 1 0 0 1 1 1 1 HNH endonuclease DndB PF14072.6 gi|292656383|ref|YP_003536280.1| - 0.0016 17.7 0.2 0.0056 15.9 0.0 1.9 2 0 0 2 2 2 1 DNA-sulfur modification-associated ParBc PF02195.18 gi|292656383|ref|YP_003536280.1| - 0.0052 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain FadA PF09403.10 gi|292656385|ref|YP_003536282.1| - 0.013 16.0 2.1 1.6 9.2 0.2 2.3 2 1 0 2 2 2 0 Adhesion protein FadA PhoU PF01895.19 gi|292656385|ref|YP_003536282.1| - 0.015 15.8 1.1 0.35 11.4 0.2 2.3 2 0 0 2 2 2 0 PhoU domain DUF3658 PF12395.8 gi|292656385|ref|YP_003536282.1| - 0.019 14.9 1.2 0.019 14.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function Pox_A_type_inc PF04508.12 gi|292656385|ref|YP_003536282.1| - 0.02 14.7 0.0 0.06 13.2 0.0 1.9 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat AAA_15 PF13175.6 gi|292656385|ref|YP_003536282.1| - 0.033 13.9 0.1 0.04 13.6 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain PilJ PF13675.6 gi|292656385|ref|YP_003536282.1| - 0.034 14.2 2.0 0.082 12.9 1.9 1.7 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Med14 PF08638.11 gi|292656385|ref|YP_003536282.1| - 0.037 13.4 0.6 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 Mediator complex subunit MED14 SlyX PF04102.12 gi|292656385|ref|YP_003536282.1| - 0.056 14.1 6.0 0.21 12.2 0.3 2.5 2 0 0 2 2 2 0 SlyX Exonuc_VII_L PF02601.15 gi|292656385|ref|YP_003536282.1| - 0.066 12.8 2.0 0.087 12.4 2.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Csm1_N PF18504.1 gi|292656385|ref|YP_003536282.1| - 0.07 13.5 2.3 0.29 11.5 0.1 2.5 2 0 0 2 2 2 0 Csm1 N-terminal domain DLP_helical PF18709.1 gi|292656385|ref|YP_003536282.1| - 0.073 12.3 0.9 0.09 12.0 0.9 1.2 1 0 0 1 1 1 0 Dynamin-like helical domain Lebercilin PF15619.6 gi|292656385|ref|YP_003536282.1| - 0.079 12.6 4.1 0.6 9.7 0.1 2.5 3 0 0 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease ECM11 PF15463.6 gi|292656385|ref|YP_003536282.1| - 0.095 13.3 3.2 0.45 11.1 1.0 2.0 2 0 0 2 2 2 0 Extracellular mutant protein 11 z-alpha PF02295.17 gi|292656385|ref|YP_003536282.1| - 0.12 12.4 0.1 13 6.0 0.0 2.5 2 1 0 2 2 2 0 Adenosine deaminase z-alpha domain DUF1515 PF07439.11 gi|292656385|ref|YP_003536282.1| - 0.13 12.3 0.9 0.47 10.5 0.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) ParE_toxin PF05016.15 gi|292656385|ref|YP_003536282.1| - 0.19 12.4 2.0 20 5.9 0.1 2.8 2 1 1 3 3 3 0 ParE toxin of type II toxin-antitoxin system, parDE DUF2937 PF11157.8 gi|292656385|ref|YP_003536282.1| - 0.34 10.6 4.2 1.2 8.8 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) DUF4094 PF13334.6 gi|292656385|ref|YP_003536282.1| - 0.43 11.0 3.9 1.2 9.6 0.8 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4094) NPV_P10 PF05531.12 gi|292656385|ref|YP_003536282.1| - 1.1 9.8 7.0 10 6.6 7.1 2.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|292656385|ref|YP_003536282.1| - 1.3 9.0 6.3 3.2 7.8 6.3 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlxA PF14282.6 gi|292656385|ref|YP_003536282.1| - 1.4 8.9 11.1 3.4 7.7 6.6 2.3 1 1 1 2 2 2 0 FlxA-like protein UPF0242 PF06785.11 gi|292656385|ref|YP_003536282.1| - 2.1 8.4 8.8 6.4 6.8 8.4 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Nup54 PF13874.6 gi|292656385|ref|YP_003536282.1| - 5.2 7.2 8.4 23 5.1 8.2 2.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 BST2 PF16716.5 gi|292656385|ref|YP_003536282.1| - 6 7.5 8.2 2.6 8.7 3.5 2.4 2 1 1 3 3 3 0 Bone marrow stromal antigen 2 Tropomyosin_1 PF12718.7 gi|292656385|ref|YP_003536282.1| - 8.9 6.5 10.6 11 6.1 5.4 2.8 2 2 1 3 3 3 0 Tropomyosin like HalX PF08663.10 gi|292656385|ref|YP_003536282.1| - 8.9 6.7 9.5 2 8.8 0.5 3.0 2 1 0 3 3 3 0 HalX domain Phage_integrase PF00589.22 gi|292656386|ref|YP_003536283.1| - 4e-24 85.3 0.0 6.3e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|292656386|ref|YP_003536283.1| - 4.9e-10 39.7 0.2 9e-10 38.9 0.2 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|292656386|ref|YP_003536283.1| - 0.00011 22.4 0.1 0.00035 20.8 0.1 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|292656386|ref|YP_003536283.1| - 0.0004 20.7 0.0 0.00097 19.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_integr_3 PF16795.5 gi|292656386|ref|YP_003536283.1| - 0.0099 15.8 0.1 1.6 8.6 0.1 2.5 2 0 0 2 2 2 2 Archaeal phage integrase EH_Signature PF15611.6 gi|292656386|ref|YP_003536283.1| - 0.086 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 EH_Signature domain HTH_24 PF13412.6 gi|292656390|ref|YP_003536287.1| - 3.4e-07 29.7 0.1 9.9e-07 28.2 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292656390|ref|YP_003536287.1| - 1.2e-05 25.1 0.0 2.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|292656390|ref|YP_003536287.1| - 0.00016 21.4 0.0 0.00077 19.2 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292656390|ref|YP_003536287.1| - 0.00016 21.6 0.0 0.00047 20.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|292656390|ref|YP_003536287.1| - 0.0015 18.2 0.0 0.0043 16.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|292656390|ref|YP_003536287.1| - 0.0022 18.3 0.0 0.0056 17.0 0.0 1.7 1 0 0 1 1 1 1 Penicillinase repressor HTH_12 PF08461.10 gi|292656390|ref|YP_003536287.1| - 0.0044 16.9 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|292656390|ref|YP_003536287.1| - 0.0068 16.3 0.1 0.025 14.5 0.1 2.0 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.16 gi|292656390|ref|YP_003536287.1| - 0.0099 15.6 0.1 0.095 12.5 0.1 2.5 2 1 0 2 2 2 1 LexA DNA binding domain Rrf2 PF02082.20 gi|292656390|ref|YP_003536287.1| - 0.013 15.8 0.0 0.034 14.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|292656390|ref|YP_003536287.1| - 0.017 14.8 0.1 0.038 13.7 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|292656390|ref|YP_003536287.1| - 0.02 14.8 0.1 0.048 13.6 0.1 1.6 1 0 0 1 1 1 0 MarR family HrcA_DNA-bdg PF03444.15 gi|292656390|ref|YP_003536287.1| - 0.025 14.2 0.1 0.064 12.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_AsnC-type PF13404.6 gi|292656390|ref|YP_003536287.1| - 0.037 13.9 0.0 0.19 11.6 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain BES1_N PF05687.13 gi|292656390|ref|YP_003536287.1| - 0.065 13.6 1.3 1.1 9.7 1.7 2.6 2 1 0 2 2 2 0 BES1/BZR1 plant transcription factor, N-terminal AhpC-TSA PF00578.21 gi|292656390|ref|YP_003536287.1| - 0.066 13.1 0.0 0.26 11.2 0.0 2.1 1 0 0 1 1 1 0 AhpC/TSA family FaeA PF04703.12 gi|292656390|ref|YP_003536287.1| - 0.092 13.1 0.0 0.25 11.7 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein TrmB PF01978.19 gi|292656390|ref|YP_003536287.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Suf PF05843.14 gi|292656390|ref|YP_003536287.1| - 0.44 10.5 6.0 0.77 9.7 6.0 1.3 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) BLACT_WH PF17778.1 gi|292656390|ref|YP_003536287.1| - 0.46 10.5 2.0 0.49 10.4 0.0 2.1 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain AsiA PF09010.10 gi|292656391|ref|YP_003536288.1| - 0.17 12.0 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Anti-Sigma Factor A CBFD_NFYB_HMF PF00808.23 gi|292656392|ref|YP_003536289.1| - 0.028 14.7 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF1249 PF06853.12 gi|292656393|ref|YP_003536290.1| - 0.044 13.8 0.1 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1249) Fibritin_C PF07921.12 gi|292656393|ref|YP_003536290.1| - 0.16 12.1 0.2 0.67 10.1 0.1 2.0 2 0 0 2 2 2 0 Fibritin C-terminal region TBP PF00352.21 gi|292656395|ref|YP_003536292.1| - 2.4e-42 142.8 0.0 1.3e-20 73.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|292656395|ref|YP_003536292.1| - 0.0027 17.8 0.0 0.5 10.5 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) PGM1_C PF18105.1 gi|292656395|ref|YP_003536292.1| - 0.039 13.5 0.1 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 PGM1 C-terminal domain EcoEI_R_C PF08463.10 gi|292656396|ref|YP_003536293.1| - 4.6e-43 147.3 4.9 4.6e-43 147.3 4.9 1.8 2 0 0 2 2 2 1 EcoEI R protein C-terminal ResIII PF04851.15 gi|292656396|ref|YP_003536293.1| - 3.8e-34 118.2 2.9 2e-33 115.8 0.0 3.0 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|292656396|ref|YP_003536293.1| - 1.1e-16 61.2 0.0 2.2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|292656396|ref|YP_003536293.1| - 1.5e-10 41.4 6.1 2.2e-08 34.3 0.0 4.0 3 1 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|292656396|ref|YP_003536293.1| - 2.1e-09 37.7 0.1 5.6e-09 36.3 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|292656396|ref|YP_003536293.1| - 1.4e-08 34.7 0.0 3.2e-08 33.5 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Spc42p PF11544.8 gi|292656396|ref|YP_003536293.1| - 0.041 13.9 0.6 0.095 12.7 0.6 1.6 1 0 0 1 1 1 0 Spindle pole body component Spc42p PhoH PF02562.16 gi|292656396|ref|YP_003536293.1| - 0.057 12.9 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein N6_Mtase PF02384.16 gi|292656397|ref|YP_003536294.1| - 1.8e-71 241.0 0.0 2.3e-71 240.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|292656397|ref|YP_003536294.1| - 3.6e-15 56.8 0.5 2.2e-14 54.3 0.0 2.5 2 2 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|292656397|ref|YP_003536294.1| - 2.6e-08 33.8 0.0 5.3e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|292656397|ref|YP_003536294.1| - 0.0058 17.1 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase DUF3879 PF12995.7 gi|292656397|ref|YP_003536294.1| - 0.014 15.1 0.0 0.074 12.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function, E. rectale Gene description (DUF3879) MTS PF05175.14 gi|292656397|ref|YP_003536294.1| - 0.038 13.5 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain MCM_N PF14551.6 gi|292656397|ref|YP_003536294.1| - 0.045 14.3 0.9 0.14 12.8 0.9 1.9 1 0 0 1 1 1 0 MCM N-terminal domain VKG_Carbox PF05090.14 gi|292656397|ref|YP_003536294.1| - 0.17 10.7 0.1 0.23 10.3 0.1 1.1 1 0 0 1 1 1 0 Vitamin K-dependent gamma-carboxylase Methylase_S PF01420.19 gi|292656398|ref|YP_003536295.1| - 1.1e-45 155.8 0.0 1.5e-24 87.1 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF1192 PF06698.11 gi|292656399|ref|YP_003536296.1| - 0.0014 18.6 1.7 0.0028 17.7 1.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1192) 7TMR-HDED PF07697.11 gi|292656399|ref|YP_003536296.1| - 0.0096 16.1 6.2 0.012 15.8 6.2 1.1 1 0 0 1 1 1 1 7TM-HD extracellular Cpn60_TCP1 PF00118.24 gi|292656399|ref|YP_003536296.1| - 0.015 13.9 0.2 0.015 13.9 0.2 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family ADIP PF11559.8 gi|292656399|ref|YP_003536296.1| - 0.059 13.5 4.6 0.075 13.1 4.6 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding RNase_J_C PF17770.1 gi|292656399|ref|YP_003536296.1| - 0.07 14.2 0.7 0.25 12.4 0.6 2.0 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain RHH_1 PF01402.21 gi|292656399|ref|YP_003536296.1| - 0.081 12.9 0.1 0.081 12.9 0.1 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Exonuc_VII_L PF02601.15 gi|292656399|ref|YP_003536296.1| - 0.18 11.4 2.4 0.2 11.2 2.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1840 PF08895.11 gi|292656399|ref|YP_003536296.1| - 0.28 11.5 2.6 0.28 11.5 1.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) eIF-4B PF06273.11 gi|292656399|ref|YP_003536296.1| - 0.48 9.4 5.1 0.66 9.0 5.1 1.2 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B BST2 PF16716.5 gi|292656399|ref|YP_003536296.1| - 2.3 8.8 7.9 1.4 9.6 5.1 2.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF4140 PF13600.6 gi|292656399|ref|YP_003536296.1| - 3 8.3 6.6 3 8.4 4.8 1.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Phage_integrase PF00589.22 gi|292656400|ref|YP_003536297.1| - 3.6e-28 98.5 0.0 6.6e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|292656400|ref|YP_003536297.1| - 1.2e-09 38.5 0.9 3.2e-09 37.1 0.9 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|292656400|ref|YP_003536297.1| - 0.0001 22.6 2.6 0.00014 22.1 0.6 2.3 3 0 0 3 3 3 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|292656400|ref|YP_003536297.1| - 0.00012 22.3 1.4 0.00048 20.4 1.4 2.1 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|292656400|ref|YP_003536297.1| - 0.009 15.9 0.1 2.5 8.0 0.0 2.8 2 0 0 2 2 2 2 Archaeal phage integrase DUF3945 PF13101.6 gi|292656401|ref|YP_003536298.1| - 0.041 13.6 0.0 0.086 12.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) DUF2777 PF10949.8 gi|292656401|ref|YP_003536298.1| - 0.18 11.5 0.0 0.18 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2777) N6_Mtase PF02384.16 gi|292656402|ref|YP_003536299.1| - 1.4e-16 60.7 0.0 2.4e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase RrnaAD PF00398.20 gi|292656402|ref|YP_003536299.1| - 1.9e-06 27.2 0.0 2e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|292656402|ref|YP_003536299.1| - 1.7e-05 24.7 0.1 7.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292656402|ref|YP_003536299.1| - 0.00013 22.6 0.0 0.0026 18.4 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain MTS PF05175.14 gi|292656402|ref|YP_003536299.1| - 0.002 17.7 0.0 0.077 12.5 0.0 3.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|292656402|ref|YP_003536299.1| - 0.024 14.5 0.0 0.087 12.6 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain TaqI_C PF12950.7 gi|292656402|ref|YP_003536299.1| - 0.031 14.4 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 TaqI-like C-terminal specificity domain N6_N4_Mtase PF01555.18 gi|292656402|ref|YP_003536299.1| - 0.077 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA methylase AAA_22 PF13401.6 gi|292656403|ref|YP_003536300.1| - 0.0016 18.7 0.1 0.013 15.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|292656403|ref|YP_003536300.1| - 0.0023 17.2 0.0 0.03 13.5 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain IstB_IS21 PF01695.17 gi|292656403|ref|YP_003536300.1| - 0.0049 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|292656403|ref|YP_003536300.1| - 0.0059 16.5 0.0 0.075 12.9 0.0 2.3 1 1 0 1 1 1 1 NACHT domain EzrA PF06160.12 gi|292656403|ref|YP_003536300.1| - 0.012 13.8 4.5 0.025 12.8 4.5 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Peptidase_M75 PF09375.10 gi|292656403|ref|YP_003536300.1| - 0.048 13.1 0.4 0.22 11.0 0.2 2.2 1 1 0 1 1 1 0 Imelysin TFA2_Winged_2 PF18121.1 gi|292656403|ref|YP_003536300.1| - 0.073 12.8 1.9 0.25 11.1 0.6 2.7 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 TPR_MLP1_2 PF07926.12 gi|292656403|ref|YP_003536300.1| - 0.079 13.0 1.7 0.36 10.9 1.7 2.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Tektin PF03148.14 gi|292656403|ref|YP_003536300.1| - 0.13 11.0 4.4 0.065 12.0 2.1 1.6 2 0 0 2 2 2 0 Tektin family AAA_16 PF13191.6 gi|292656403|ref|YP_003536300.1| - 0.27 11.6 2.5 0.7 10.3 0.0 2.9 2 1 2 4 4 4 0 AAA ATPase domain Spc7 PF08317.11 gi|292656403|ref|YP_003536300.1| - 0.52 9.1 8.4 0.95 8.3 8.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2250 PF10007.9 gi|292656404|ref|YP_003536301.1| - 0.005 16.9 3.3 0.0066 16.5 1.6 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) LIN52 PF10044.9 gi|292656404|ref|YP_003536301.1| - 0.044 14.5 0.3 0.12 13.1 0.1 1.7 1 1 1 2 2 2 0 Retinal tissue protein MarR_2 PF12802.7 gi|292656404|ref|YP_003536301.1| - 0.046 13.6 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|292656404|ref|YP_003536301.1| - 0.09 13.3 0.1 0.19 12.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Tnp_22_trimer PF17489.2 gi|292656404|ref|YP_003536301.1| - 0.46 10.5 0.2 0.46 10.5 0.2 2.6 3 1 0 3 3 3 0 L1 transposable element trimerization domain TrwB_AAD_bind PF10412.9 gi|292656405|ref|YP_003536302.1| - 2.2e-09 36.7 0.0 5.1e-09 35.5 0.0 1.5 1 1 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|292656405|ref|YP_003536302.1| - 5.4e-07 29.6 0.0 1.8e-06 27.9 0.0 2.0 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|292656405|ref|YP_003536302.1| - 0.00049 20.4 0.0 0.092 13.0 0.0 3.4 2 1 1 3 3 3 1 AAA domain ResIII PF04851.15 gi|292656405|ref|YP_003536302.1| - 0.052 13.5 0.3 0.3 11.1 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|292656405|ref|YP_003536302.1| - 0.078 13.4 0.6 4.6 7.7 0.0 3.5 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|292656405|ref|YP_003536302.1| - 0.11 12.2 0.0 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain IF-2B PF01008.17 gi|292656407|ref|YP_003536304.1| - 0.005 16.1 4.9 0.0058 15.9 4.9 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Sucrose_synth PF00862.19 gi|292656407|ref|YP_003536304.1| - 0.032 12.5 4.1 0.036 12.4 4.1 1.0 1 0 0 1 1 1 0 Sucrose synthase LicD PF04991.13 gi|292656407|ref|YP_003536304.1| - 0.05 13.7 2.9 0.054 13.6 2.9 1.0 1 0 0 1 1 1 0 LicD family FUSC PF04632.12 gi|292656407|ref|YP_003536304.1| - 0.059 11.9 4.7 0.064 11.8 4.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2407 PF10302.9 gi|292656407|ref|YP_003536304.1| - 0.089 13.4 2.3 0.16 12.5 2.3 1.4 1 1 0 1 1 1 0 DUF2407 ubiquitin-like domain Hexokinase_1 PF00349.21 gi|292656407|ref|YP_003536304.1| - 0.1 12.5 5.0 1.1 9.1 0.4 2.0 1 1 1 2 2 2 0 Hexokinase HemX PF04375.14 gi|292656407|ref|YP_003536304.1| - 0.1 11.8 16.5 0.12 11.6 16.5 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PA26 PF04636.13 gi|292656407|ref|YP_003536304.1| - 0.32 9.9 8.2 0.36 9.7 8.2 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Prominin PF05478.11 gi|292656407|ref|YP_003536304.1| - 1.1 7.2 10.4 1.1 7.1 10.4 1.0 1 0 0 1 1 1 0 Prominin Spore_GerAC PF05504.11 gi|292656407|ref|YP_003536304.1| - 1.2 9.3 10.4 0.11 12.7 4.7 1.8 1 1 1 2 2 2 0 Spore germination B3/ GerAC like, C-terminal PAP_central PF04928.17 gi|292656407|ref|YP_003536304.1| - 1.5 7.8 7.3 1.8 7.5 7.3 1.1 1 0 0 1 1 1 0 Poly(A) polymerase central domain AAA_23 PF13476.6 gi|292656407|ref|YP_003536304.1| - 1.7 9.1 12.3 2.2 8.7 12.3 1.1 1 0 0 1 1 1 0 AAA domain DUF4400 PF14348.6 gi|292656407|ref|YP_003536304.1| - 2.1 7.8 4.1 2.8 7.4 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) NPV_P10 PF05531.12 gi|292656407|ref|YP_003536304.1| - 2.6 8.6 14.0 11 6.5 0.8 3.1 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Tsg PF04668.12 gi|292656407|ref|YP_003536304.1| - 3.2 8.4 6.5 4.5 8.0 6.3 1.3 1 1 0 1 1 1 0 Twisted gastrulation (Tsg) protein conserved region TMPIT PF07851.13 gi|292656407|ref|YP_003536304.1| - 3.9 6.6 10.8 4.6 6.4 10.8 1.1 1 0 0 1 1 1 0 TMPIT-like protein AAA_10 PF12846.7 gi|292656408|ref|YP_003536305.1| - 7.1e-13 48.2 0.1 5.1e-07 28.9 0.1 2.2 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|292656408|ref|YP_003536305.1| - 3.5e-09 37.1 0.4 3e-08 34.0 0.0 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|292656408|ref|YP_003536305.1| - 0.0071 16.6 4.9 0.017 15.4 0.3 3.4 3 1 0 3 3 3 1 AAA domain DEAD PF00270.29 gi|292656408|ref|YP_003536305.1| - 0.0096 15.7 0.3 0.073 12.8 0.1 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|292656408|ref|YP_003536305.1| - 0.022 14.7 0.1 0.11 12.5 0.1 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|292656408|ref|YP_003536305.1| - 0.044 12.7 0.0 0.33 9.8 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|292656408|ref|YP_003536305.1| - 0.085 12.2 0.1 0.46 9.8 0.0 2.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family Terminase_6 PF03237.15 gi|292656408|ref|YP_003536305.1| - 0.088 12.5 0.0 0.65 9.6 0.0 2.2 2 0 0 2 2 2 0 Terminase-like family DUF4268 PF14088.6 gi|292656408|ref|YP_003536305.1| - 0.12 12.2 0.1 4 7.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4268) RGI_lyase PF18370.1 gi|292656413|ref|YP_003536310.1| - 0.046 14.0 1.3 12 6.3 0.0 3.0 2 0 0 2 2 2 0 Rhamnogalacturonan I lyases beta-sheet domain FixG_C PF11614.8 gi|292656413|ref|YP_003536310.1| - 0.05 13.8 1.4 0.089 13.0 0.5 1.9 1 1 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF932 PF06067.11 gi|292656414|ref|YP_003536311.1| - 2.1e-08 34.2 0.0 3e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF932) Creatinase_N PF01321.18 gi|292656414|ref|YP_003536311.1| - 0.012 16.3 0.0 0.038 14.7 0.0 1.8 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain DUF2254 PF10011.9 gi|292656415|ref|YP_003536312.1| - 0.00028 19.8 4.9 0.15 10.9 4.5 2.4 1 1 0 2 2 2 2 Predicted membrane protein (DUF2254) TrwB_AAD_bind PF10412.9 gi|292656416|ref|YP_003536313.1| - 7.2e-05 21.9 0.0 0.04 12.8 0.0 2.5 2 1 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|292656416|ref|YP_003536313.1| - 0.00059 19.5 0.5 0.0056 16.4 0.1 2.5 3 0 0 3 3 3 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|292656416|ref|YP_003536313.1| - 0.0011 19.1 0.0 0.005 17.0 0.0 2.0 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_33 PF13671.6 gi|292656416|ref|YP_003536313.1| - 0.0062 16.7 0.0 0.23 11.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|292656416|ref|YP_003536313.1| - 0.04 13.3 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SHQ1 PF04925.15 gi|292656416|ref|YP_003536313.1| - 0.044 13.3 0.1 16 5.0 0.1 3.2 3 0 0 3 3 3 0 SHQ1 protein AAA_22 PF13401.6 gi|292656416|ref|YP_003536313.1| - 0.051 13.8 0.0 0.2 11.9 0.0 2.0 1 0 0 1 1 1 0 AAA domain Rep_fac_C PF08542.11 gi|292656416|ref|YP_003536313.1| - 0.059 13.8 0.2 54 4.3 0.0 3.4 3 0 0 3 3 3 0 Replication factor C C-terminal domain AAA_17 PF13207.6 gi|292656416|ref|YP_003536313.1| - 0.1 13.1 0.4 11 6.4 0.0 3.1 3 1 0 3 3 3 0 AAA domain PadR PF03551.14 gi|292656416|ref|YP_003536313.1| - 0.14 12.1 0.5 0.47 10.5 0.5 1.9 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family AAA_7 PF12775.7 gi|292656416|ref|YP_003536313.1| - 0.18 11.3 0.0 0.58 9.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing dynein motor region Phage_integrase PF00589.22 gi|292656417|ref|YP_003536314.1| - 8.1e-13 48.5 0.0 1.8e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|292656417|ref|YP_003536314.1| - 4e-05 23.8 1.9 0.014 15.7 0.0 3.0 3 0 0 3 3 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.6 gi|292656417|ref|YP_003536314.1| - 0.00026 20.3 5.9 0.17 11.3 2.9 2.7 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|292656417|ref|YP_003536314.1| - 0.00039 20.4 5.4 0.01 15.9 0.5 2.5 2 0 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|292656417|ref|YP_003536314.1| - 0.0071 16.0 7.0 0.031 14.0 1.6 3.3 3 0 0 3 3 3 1 zinc-ribbon domain Phage_int_SAM_4 PF13495.6 gi|292656417|ref|YP_003536314.1| - 0.029 14.8 0.0 16 6.1 0.0 2.7 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Stc1 PF12898.7 gi|292656417|ref|YP_003536314.1| - 0.032 14.8 2.1 0.032 14.8 2.1 2.3 2 0 0 2 2 2 0 Stc1 domain zf-BED PF02892.15 gi|292656417|ref|YP_003536314.1| - 0.032 14.2 7.3 3.6 7.7 0.3 3.5 2 1 1 3 3 3 0 BED zinc finger FYVE PF01363.21 gi|292656417|ref|YP_003536314.1| - 0.085 13.0 4.3 0.9 9.7 0.4 2.4 2 0 0 2 2 2 0 FYVE zinc finger DUF4845 PF16137.5 gi|292656417|ref|YP_003536314.1| - 0.14 13.1 0.5 14 6.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4845) DUF2616 PF11077.8 gi|292656417|ref|YP_003536314.1| - 0.16 11.7 3.1 0.53 10.0 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2616) HypA PF01155.19 gi|292656417|ref|YP_003536314.1| - 0.21 11.6 5.3 0.21 11.6 1.1 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PyrI_C PF02748.15 gi|292656417|ref|YP_003536314.1| - 1.1 9.2 5.2 0.24 11.3 0.4 2.3 2 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.9 gi|292656417|ref|YP_003536314.1| - 1.3 9.2 5.2 1.2 9.2 0.3 3.0 3 0 0 3 3 2 0 Zinc-finger domain zinc_ribbon_15 PF17032.5 gi|292656417|ref|YP_003536314.1| - 1.6 9.5 6.3 1.5 9.6 1.6 2.4 2 0 0 2 2 2 0 zinc-ribbon family zf-RING_7 PF02591.15 gi|292656417|ref|YP_003536314.1| - 4.3 7.6 6.7 34 4.7 0.2 3.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|292656417|ref|YP_003536314.1| - 4.6 7.0 7.4 4.1 7.2 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|292656417|ref|YP_003536314.1| - 5.8 7.1 6.1 20 5.4 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|292656417|ref|YP_003536314.1| - 8.3 6.4 7.8 2.4 8.1 1.8 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Prominin PF05478.11 gi|292656419|ref|YP_003536316.1| - 0.0027 15.8 0.5 0.0032 15.5 0.5 1.1 1 0 0 1 1 1 1 Prominin SF-assemblin PF06705.11 gi|292656419|ref|YP_003536316.1| - 0.009 15.4 7.2 0.013 14.9 7.2 1.2 1 0 0 1 1 1 1 SF-assemblin/beta giardin DUF1351 PF07083.11 gi|292656419|ref|YP_003536316.1| - 0.0094 15.7 4.6 0.021 14.6 4.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1351) Glypican PF01153.19 gi|292656419|ref|YP_003536316.1| - 0.015 14.1 3.4 0.017 13.9 3.4 1.1 1 0 0 1 1 1 0 Glypican Sec8_exocyst PF04048.14 gi|292656419|ref|YP_003536316.1| - 0.024 14.5 4.3 0.15 12.0 4.3 2.1 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain Enkurin PF13864.6 gi|292656419|ref|YP_003536316.1| - 0.026 15.0 6.6 0.026 15.0 6.6 2.2 1 1 1 2 2 2 0 Calmodulin-binding Cactin_mid PF10312.9 gi|292656419|ref|YP_003536316.1| - 0.026 14.2 7.9 0.032 13.9 7.9 1.1 1 0 0 1 1 1 0 Conserved mid region of cactin Exonuc_VII_L PF02601.15 gi|292656419|ref|YP_003536316.1| - 0.034 13.7 6.1 0.051 13.1 6.1 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Baculo_PEP_C PF04513.12 gi|292656419|ref|YP_003536316.1| - 0.035 14.1 0.8 0.053 13.5 0.6 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus YtxH PF12732.7 gi|292656419|ref|YP_003536316.1| - 0.037 14.6 0.8 0.15 12.6 0.8 2.0 1 1 0 1 1 1 0 YtxH-like protein Spore_III_AB PF09548.10 gi|292656419|ref|YP_003536316.1| - 0.039 14.1 10.0 0.06 13.5 10.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Peptidase_C2 PF00648.21 gi|292656419|ref|YP_003536316.1| - 0.063 12.3 0.0 0.072 12.1 0.0 1.1 1 0 0 1 1 1 0 Calpain family cysteine protease Fib_alpha PF08702.10 gi|292656419|ref|YP_003536316.1| - 0.064 13.4 3.9 0.085 13.0 3.9 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Tweety PF04906.13 gi|292656419|ref|YP_003536316.1| - 0.066 11.9 1.3 0.077 11.6 0.9 1.3 1 1 0 1 1 1 0 Tweety Phasin PF05597.11 gi|292656419|ref|YP_003536316.1| - 0.072 13.1 3.6 0.053 13.5 2.1 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MapZ_EC1 PF18041.1 gi|292656419|ref|YP_003536316.1| - 0.076 13.3 1.3 0.25 11.6 0.3 2.1 1 1 1 2 2 2 0 MapZ extracellular domain 1 Zw10 PF06248.13 gi|292656419|ref|YP_003536316.1| - 0.077 11.6 4.5 0.085 11.4 4.5 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 DUF1664 PF07889.12 gi|292656419|ref|YP_003536316.1| - 0.091 12.8 2.3 0.16 12.0 1.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) PIN_8 PF18476.1 gi|292656419|ref|YP_003536316.1| - 0.097 12.5 4.8 0.13 12.0 4.8 1.3 1 0 0 1 1 1 0 PIN like domain DUF842 PF05811.13 gi|292656419|ref|YP_003536316.1| - 0.097 12.4 0.7 0.19 11.4 0.7 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF842) HlyD_2 PF12700.7 gi|292656419|ref|YP_003536316.1| - 0.1 11.3 5.8 0.13 11.0 5.8 1.0 1 0 0 1 1 1 0 HlyD family secretion protein AAA_13 PF13166.6 gi|292656419|ref|YP_003536316.1| - 0.12 11.0 8.2 0.15 10.7 8.2 1.1 1 0 0 1 1 1 0 AAA domain ApoO PF09769.9 gi|292656419|ref|YP_003536316.1| - 0.14 12.1 3.0 0.2 11.6 1.0 1.8 1 1 1 2 2 2 0 Apolipoprotein O OmpH PF03938.14 gi|292656419|ref|YP_003536316.1| - 0.16 12.3 14.4 0.32 11.3 14.4 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) T2SSF PF00482.23 gi|292656419|ref|YP_003536316.1| - 0.18 11.7 4.7 0.31 11.0 4.0 1.8 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F DUF4200 PF13863.6 gi|292656419|ref|YP_003536316.1| - 0.19 12.1 20.3 0.21 12.0 10.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Mt_ATP-synt_D PF05873.12 gi|292656419|ref|YP_003536316.1| - 0.23 11.3 2.7 0.46 10.3 0.3 2.1 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) WXG100 PF06013.12 gi|292656419|ref|YP_003536316.1| - 0.23 11.7 3.7 0.49 10.7 1.4 2.4 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Sec20 PF03908.13 gi|292656419|ref|YP_003536316.1| - 0.3 11.0 4.1 0.52 10.3 3.2 1.9 1 1 1 2 2 2 0 Sec20 FapA PF03961.13 gi|292656419|ref|YP_003536316.1| - 0.35 9.4 8.1 0.5 8.9 8.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A CdvA PF18822.1 gi|292656419|ref|YP_003536316.1| - 0.37 10.6 13.4 0.55 10.1 13.4 1.2 1 0 0 1 1 1 0 CdvA-like coiled-coil domain Phage_Mu_Gam PF07352.12 gi|292656419|ref|YP_003536316.1| - 0.44 10.5 9.4 2.7 7.9 9.4 2.2 1 1 0 1 1 1 0 Bacteriophage Mu Gam like protein ING PF12998.7 gi|292656419|ref|YP_003536316.1| - 0.48 11.0 10.3 14 6.3 8.8 2.9 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF5082 PF16888.5 gi|292656419|ref|YP_003536316.1| - 0.5 10.7 9.8 0.25 11.6 2.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) GCN5L1 PF06320.13 gi|292656419|ref|YP_003536316.1| - 0.55 10.4 7.5 4.8 7.4 0.4 2.5 2 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) FAM184 PF15665.5 gi|292656419|ref|YP_003536316.1| - 0.61 9.8 17.8 1.7 8.4 17.8 1.6 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B LMBR1 PF04791.16 gi|292656419|ref|YP_003536316.1| - 0.63 8.9 4.4 0.72 8.7 4.4 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Laminin_II PF06009.12 gi|292656419|ref|YP_003536316.1| - 0.63 10.1 5.6 0.19 11.7 0.8 2.0 1 1 1 2 2 2 0 Laminin Domain II DUF4795 PF16043.5 gi|292656419|ref|YP_003536316.1| - 0.73 9.4 11.3 1.7 8.2 10.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Patched PF02460.18 gi|292656419|ref|YP_003536316.1| - 0.8 7.7 1.6 0.98 7.4 1.6 1.0 1 0 0 1 1 1 0 Patched family Cas_DxTHG PF09455.10 gi|292656419|ref|YP_003536316.1| - 0.94 9.0 8.3 1.1 8.7 8.3 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family DUF4407 PF14362.6 gi|292656419|ref|YP_003536316.1| - 1.1 8.6 5.6 1.8 7.9 5.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4047 PF13256.6 gi|292656419|ref|YP_003536316.1| - 1.6 9.0 5.6 4.8 7.4 5.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4047) TPR_MLP1_2 PF07926.12 gi|292656419|ref|YP_003536316.1| - 3 7.9 22.9 4.3 7.4 9.5 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein HIP1_clath_bdg PF16515.5 gi|292656419|ref|YP_003536316.1| - 3.6 8.3 20.3 2 9.1 9.6 2.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TMPIT PF07851.13 gi|292656419|ref|YP_003536316.1| - 3.9 6.6 6.1 6 6.0 6.1 1.4 1 1 0 1 1 1 0 TMPIT-like protein DUF883 PF05957.13 gi|292656419|ref|YP_003536316.1| - 4.2 8.0 6.7 3.9 8.1 1.0 2.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) KIP1 PF07765.12 gi|292656419|ref|YP_003536316.1| - 4.4 7.5 10.9 4.4 7.5 1.9 2.6 1 1 1 2 2 2 0 KIP1-like protein DUF1451 PF07295.11 gi|292656419|ref|YP_003536316.1| - 4.5 7.3 10.7 2.4 8.2 5.5 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain DLP_helical PF18709.1 gi|292656419|ref|YP_003536316.1| - 5.2 6.2 9.8 0.89 8.7 4.6 1.9 1 1 1 2 2 2 0 Dynamin-like helical domain DUF349 PF03993.12 gi|292656419|ref|YP_003536316.1| - 5.4 7.4 18.1 19 5.6 7.3 3.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF349) ACCA PF03255.14 gi|292656419|ref|YP_003536316.1| - 6 6.7 10.1 3.1 7.7 1.4 2.2 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit dCache_2 PF08269.11 gi|292656419|ref|YP_003536316.1| - 7.3 5.7 8.7 32 3.6 8.7 1.8 1 1 0 1 1 1 0 Cache domain GBP_C PF02841.14 gi|292656419|ref|YP_003536316.1| - 7.4 5.9 15.7 0.6 9.5 9.6 1.8 1 1 1 2 2 2 0 Guanylate-binding protein, C-terminal domain DUF2205 PF10224.9 gi|292656419|ref|YP_003536316.1| - 8.2 6.5 14.5 0.25 11.4 6.0 2.3 1 1 0 2 2 2 0 Short coiled-coil protein DUF1043 PF06295.12 gi|292656419|ref|YP_003536316.1| - 8.5 6.4 10.4 22 5.0 10.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) Cdc6_C PF09079.11 gi|292656420|ref|YP_003536317.1| - 2.5e-13 49.8 0.2 1.5e-12 47.3 0.1 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|292656420|ref|YP_003536317.1| - 3.9e-10 40.1 1.3 9.6e-10 38.9 0.3 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292656420|ref|YP_003536317.1| - 3.9e-09 37.1 1.0 5.5e-07 30.1 0.7 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|292656420|ref|YP_003536317.1| - 3.1e-08 34.1 0.0 6.7e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|292656420|ref|YP_003536317.1| - 0.00011 22.2 0.2 0.00039 20.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|292656420|ref|YP_003536317.1| - 0.00038 20.2 0.2 0.00088 19.0 0.2 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_6 PF12774.7 gi|292656420|ref|YP_003536317.1| - 0.00045 19.3 0.0 0.00074 18.6 0.0 1.2 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region ATPase_2 PF01637.18 gi|292656420|ref|YP_003536317.1| - 0.0009 19.2 0.6 0.0022 18.0 0.1 1.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|292656420|ref|YP_003536317.1| - 0.0011 18.7 0.3 0.0088 15.8 0.3 2.4 2 1 0 2 2 2 1 IstB-like ATP binding protein TsaE PF02367.17 gi|292656420|ref|YP_003536317.1| - 0.0023 17.9 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|292656420|ref|YP_003536317.1| - 0.0026 17.3 0.0 0.0055 16.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|292656420|ref|YP_003536317.1| - 0.0035 17.4 0.2 0.018 15.1 0.1 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|292656420|ref|YP_003536317.1| - 0.0042 16.3 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|292656420|ref|YP_003536317.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CTP_transf_3 PF02348.19 gi|292656420|ref|YP_003536317.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase NB-ARC PF00931.22 gi|292656420|ref|YP_003536317.1| - 0.024 13.8 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|292656420|ref|YP_003536317.1| - 0.029 14.5 0.1 0.13 12.4 0.0 2.2 3 1 0 3 3 3 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|292656420|ref|YP_003536317.1| - 0.031 14.6 0.3 0.36 11.2 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_35 PF14516.6 gi|292656420|ref|YP_003536317.1| - 0.036 12.9 0.4 0.29 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain Bac_DnaA PF00308.18 gi|292656420|ref|YP_003536317.1| - 0.043 13.7 0.1 0.088 12.6 0.1 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein DUF835 PF05763.12 gi|292656420|ref|YP_003536317.1| - 0.048 13.4 0.8 2.2 8.0 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF835) AAA_33 PF13671.6 gi|292656420|ref|YP_003536317.1| - 0.052 13.7 0.4 0.12 12.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|292656420|ref|YP_003536317.1| - 0.053 13.2 0.0 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Leuk-A4-hydro_C PF09127.11 gi|292656420|ref|YP_003536317.1| - 0.055 13.5 0.4 0.15 12.1 0.1 1.9 2 0 0 2 2 2 0 Leukotriene A4 hydrolase, C-terminal AAA_22 PF13401.6 gi|292656421|ref|YP_003536318.1| - 2.4e-16 60.2 0.0 6.7e-16 58.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292656421|ref|YP_003536318.1| - 3.2e-14 53.7 0.8 2.4e-12 47.6 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.18 gi|292656421|ref|YP_003536318.1| - 2.6e-08 34.0 0.0 2.5e-05 24.2 0.0 2.0 2 0 0 2 2 2 2 Bacterial dnaA protein TniB PF05621.11 gi|292656421|ref|YP_003536318.1| - 4.8e-08 32.6 0.0 7.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|292656421|ref|YP_003536318.1| - 7.2e-07 29.3 0.0 5e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|292656421|ref|YP_003536318.1| - 3.1e-06 27.6 0.0 7e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292656421|ref|YP_003536318.1| - 3.3e-05 23.9 0.0 6e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|292656421|ref|YP_003536318.1| - 0.00048 20.1 0.0 0.00077 19.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 gi|292656421|ref|YP_003536318.1| - 0.00051 20.4 0.0 0.0014 19.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|292656421|ref|YP_003536318.1| - 0.00066 19.7 0.0 0.0014 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|292656421|ref|YP_003536318.1| - 0.001 18.8 0.0 0.0017 18.1 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|292656421|ref|YP_003536318.1| - 0.0016 17.7 0.0 0.0032 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|292656421|ref|YP_003536318.1| - 0.0018 17.8 0.0 0.0043 16.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AFG1_ATPase PF03969.16 gi|292656421|ref|YP_003536318.1| - 0.0063 15.5 0.0 0.0074 15.2 0.0 1.2 1 0 0 1 1 1 1 AFG1-like ATPase RNA_helicase PF00910.22 gi|292656421|ref|YP_003536318.1| - 0.0066 16.8 0.0 0.016 15.6 0.0 1.7 2 0 0 2 2 1 1 RNA helicase Sigma54_activ_2 PF14532.6 gi|292656421|ref|YP_003536318.1| - 0.0067 16.5 0.0 0.075 13.1 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain KAP_NTPase PF07693.14 gi|292656421|ref|YP_003536318.1| - 0.0071 15.6 0.0 0.022 14.0 0.0 1.7 1 1 1 2 2 2 1 KAP family P-loop domain NB-ARC PF00931.22 gi|292656421|ref|YP_003536318.1| - 0.0071 15.6 0.0 0.013 14.6 0.0 1.5 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.15 gi|292656421|ref|YP_003536318.1| - 0.0097 15.8 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 NTPase RuvB_N PF05496.12 gi|292656421|ref|YP_003536318.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|292656421|ref|YP_003536318.1| - 0.012 15.3 0.0 0.017 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|292656421|ref|YP_003536318.1| - 0.017 15.7 0.0 0.049 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|292656421|ref|YP_003536318.1| - 0.022 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|292656421|ref|YP_003536318.1| - 0.029 14.3 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|292656421|ref|YP_003536318.1| - 0.03 14.0 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|292656421|ref|YP_003536318.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Alg14 PF08660.11 gi|292656421|ref|YP_003536318.1| - 0.2 11.6 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 Oligosaccharide biosynthesis protein Alg14 like PDE8 PF08629.10 gi|292656422|ref|YP_003536319.1| - 0.079 13.0 0.4 0.22 11.6 0.4 1.7 1 0 0 1 1 1 0 PDE8 phosphodiesterase ATP-synt_J PF04911.12 gi|292656422|ref|YP_003536319.1| - 0.12 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 ATP synthase j chain AA_permease PF00324.21 gi|292656423|ref|YP_003536320.1| - 1.6e-10 40.2 10.2 1.7e-10 40.1 10.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|292656423|ref|YP_003536320.1| - 1.7e-08 33.7 13.5 2e-08 33.5 13.5 1.0 1 0 0 1 1 1 1 Amino acid permease SLATT_fungal PF18142.1 gi|292656423|ref|YP_003536320.1| - 5.9 6.9 6.6 1.1 9.3 0.5 2.1 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain HTH_10 PF04967.12 gi|292656424|ref|YP_003536321.1| - 1.9e-16 59.6 0.1 2.9e-16 59.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 gi|292656424|ref|YP_003536321.1| - 0.0081 16.2 0.1 0.031 14.4 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|292656424|ref|YP_003536321.1| - 0.027 14.0 0.1 0.052 13.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|292656424|ref|YP_003536321.1| - 0.038 13.9 0.1 0.074 12.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292656424|ref|YP_003536321.1| - 0.15 12.0 0.1 0.41 10.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain DS PF01916.17 gi|292656425|ref|YP_003536322.1| - 6.1e-98 327.6 0.0 1.1e-97 326.7 0.0 1.4 1 1 0 1 1 1 1 Deoxyhypusine synthase SLBB PF10531.9 gi|292656425|ref|YP_003536322.1| - 0.041 13.7 0.2 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 SLBB domain NIF3 PF01784.18 gi|292656426|ref|YP_003536323.1| - 6.8e-51 173.3 0.0 8.3e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Usp PF00582.26 gi|292656426|ref|YP_003536323.1| - 0.019 15.5 0.6 0.42 11.1 0.1 2.2 2 0 0 2 2 2 0 Universal stress protein family AP_endonuc_2 PF01261.24 gi|292656426|ref|YP_003536323.1| - 0.037 13.5 0.2 0.39 10.1 0.2 2.4 1 1 2 3 3 3 0 Xylose isomerase-like TIM barrel Arginase PF00491.21 gi|292656427|ref|YP_003536324.1| - 2.2e-55 188.2 0.7 2.7e-55 187.8 0.7 1.1 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|292656428|ref|YP_003536325.1| - 0.0013 18.7 0.0 0.0057 16.7 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|292656428|ref|YP_003536325.1| - 0.0086 16.2 0.5 0.015 15.4 0.5 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold DUF5518 PF17647.1 gi|292656429|ref|YP_003536326.1| - 9.8e-10 38.6 10.2 1.2e-09 38.3 10.2 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) ABC1 PF03109.16 gi|292656430|ref|YP_003536327.1| - 6e-28 97.4 0.0 1.4e-27 96.2 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|292656430|ref|YP_003536327.1| - 0.0012 18.8 0.9 0.18 11.7 0.4 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Rhomboid PF01694.22 gi|292656430|ref|YP_003536327.1| - 0.0044 17.0 0.2 0.0076 16.3 0.2 1.3 1 0 0 1 1 1 1 Rhomboid family 5_3_exonuc PF01367.20 gi|292656430|ref|YP_003536327.1| - 0.096 13.3 0.1 1.2 9.8 0.0 2.3 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Phage_holin_3_6 PF07332.11 gi|292656430|ref|YP_003536327.1| - 0.12 12.4 0.1 0.28 11.2 0.0 1.7 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Pkinase PF00069.25 gi|292656430|ref|YP_003536327.1| - 0.16 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain HSP20 PF00011.21 gi|292656431|ref|YP_003536328.1| - 1.7e-11 44.2 0.0 2e-11 44.0 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|292656431|ref|YP_003536328.1| - 6.7e-06 25.6 0.1 1.5e-05 24.4 0.1 1.6 1 1 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|292656431|ref|YP_003536328.1| - 0.014 15.7 0.0 0.037 14.4 0.0 1.7 1 1 0 1 1 1 0 PIH1 CS-like domain CNF1 PF05785.12 gi|292656431|ref|YP_003536328.1| - 0.22 10.8 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor MoeA_N PF03453.17 gi|292656432|ref|YP_003536329.1| - 2.9e-42 144.1 2.8 4.7e-42 143.4 2.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|292656432|ref|YP_003536329.1| - 6.5e-25 87.5 0.1 1.1e-24 86.7 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|292656432|ref|YP_003536329.1| - 7.4e-19 67.7 0.0 3.4e-18 65.6 0.0 2.3 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|292656433|ref|YP_003536330.1| - 1.3e-40 138.7 5.4 2.9e-40 137.6 5.4 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|292656433|ref|YP_003536330.1| - 4.5e-24 84.7 0.0 7.9e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|292656433|ref|YP_003536330.1| - 8.1e-23 80.5 0.0 8.1e-22 77.3 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|292656433|ref|YP_003536330.1| - 2.5e-15 56.4 0.1 9.2e-15 54.6 0.1 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|292656433|ref|YP_003536330.1| - 0.00014 21.7 0.1 0.00029 20.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HalOD1 PF18545.1 gi|292656434|ref|YP_003536331.1| - 1.8e-14 53.7 0.4 5.8e-14 52.1 0.4 1.9 1 0 0 1 1 1 1 Halobacterial output domain 1 Response_reg PF00072.24 gi|292656434|ref|YP_003536331.1| - 5.4e-13 49.1 0.0 1.2e-12 48.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HAD_2 PF13419.6 gi|292656435|ref|YP_003536332.1| - 1.7e-15 57.6 0.0 2.5e-15 57.0 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292656435|ref|YP_003536332.1| - 4.1e-09 37.1 1.9 7.1e-09 36.3 1.9 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292656435|ref|YP_003536332.1| - 2.9e-08 34.3 0.0 1.3e-06 28.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pterin_4a PF01329.19 gi|292656437|ref|YP_003536334.1| - 5.1e-25 87.5 0.0 6.1e-25 87.2 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Par3_HAL_N_term PF12053.8 gi|292656437|ref|YP_003536334.1| - 0.035 14.3 0.6 0.092 13.0 0.1 1.8 2 0 0 2 2 2 0 N-terminal of Par3 and HAL proteins Ferredoxin_N PF16947.5 gi|292656437|ref|YP_003536334.1| - 0.25 11.5 3.2 2.8 8.1 0.9 2.4 1 1 1 2 2 2 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding tRNA_anti-codon PF01336.25 gi|292656438|ref|YP_003536335.1| - 0.0015 18.5 1.2 0.0019 18.2 0.1 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain GIDE PF12483.8 gi|292656438|ref|YP_003536335.1| - 0.11 11.9 0.5 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 E3 Ubiquitin ligase GlutR_N PF05201.15 gi|292656439|ref|YP_003536336.1| - 3e-33 114.6 0.6 5.3e-33 113.8 0.1 1.6 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|292656439|ref|YP_003536336.1| - 1.4e-32 112.6 3.3 3.3e-32 111.4 0.1 2.2 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|292656439|ref|YP_003536336.1| - 3e-21 75.7 0.9 6.5e-21 74.6 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain ThiF PF00899.21 gi|292656439|ref|YP_003536336.1| - 0.02 14.2 0.2 0.04 13.3 0.2 1.4 1 0 0 1 1 1 0 ThiF family zf-C4H2 PF10146.9 gi|292656439|ref|YP_003536336.1| - 0.057 13.7 0.1 0.099 12.9 0.1 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein DUF1690 PF07956.11 gi|292656439|ref|YP_003536336.1| - 1.9 8.9 4.3 2.6 8.4 2.7 1.9 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) NAD_binding_7 PF13241.6 gi|292656440|ref|YP_003536337.1| - 2.6e-23 82.5 0.2 4.6e-23 81.6 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|292656440|ref|YP_003536337.1| - 8e-10 38.0 0.2 3.1e-08 32.9 0.0 2.5 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central DUF3305 PF11749.8 gi|292656440|ref|YP_003536337.1| - 0.0084 16.2 0.1 0.021 14.9 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3305) TrkA_N PF02254.18 gi|292656440|ref|YP_003536337.1| - 0.016 15.5 0.1 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain CysG_dimeriser PF10414.9 gi|292656440|ref|YP_003536337.1| - 0.017 14.9 1.7 0.073 12.8 0.6 2.5 1 1 1 2 2 2 0 Sirohaem synthase dimerisation region AsnC_trans_reg2 PF17805.1 gi|292656441|ref|YP_003536338.1| - 1.5e-48 162.8 0.1 2.2e-23 82.2 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain GvpL_GvpF PF06386.11 gi|292656441|ref|YP_003536338.1| - 0.036 14.0 0.4 0.057 13.3 0.4 1.3 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF2482 PF10655.9 gi|292656442|ref|YP_003536339.1| - 0.052 14.0 0.1 0.073 13.6 0.1 1.2 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) DUF4376 PF14301.6 gi|292656442|ref|YP_003536339.1| - 0.067 13.6 0.0 0.097 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4376) Prenyltransf PF01255.19 gi|292656443|ref|YP_003536340.1| - 9.1e-63 211.8 0.0 1.2e-62 211.4 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Serpin PF00079.20 gi|292656444|ref|YP_003536341.1| - 4e-109 365.3 0.0 4.8e-109 365.1 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Prenyltransf PF01255.19 gi|292656446|ref|YP_003536343.1| - 2.2e-22 79.7 0.0 3.2e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|292656447|ref|YP_003536344.1| - 5.1e-48 163.5 21.6 5.1e-48 163.5 21.6 4.0 2 2 0 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.25 gi|292656448|ref|YP_003536345.1| - 4.7e-10 39.7 0.0 6.8e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292656448|ref|YP_003536345.1| - 6.1e-10 39.1 0.0 7.1e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656448|ref|YP_003536345.1| - 4.4e-09 36.7 0.0 5.9e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656448|ref|YP_003536345.1| - 1.5e-06 28.0 0.0 2.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|292656448|ref|YP_003536345.1| - 0.034 14.2 0.0 0.2 11.8 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|292656448|ref|YP_003536345.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_3 PF13302.7 gi|292656448|ref|YP_003536345.1| - 0.15 12.7 0.0 0.33 11.6 0.0 1.6 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Toprim_4 PF13662.6 gi|292656449|ref|YP_003536346.1| - 5.8e-13 49.1 0.6 6.8e-12 45.7 0.2 2.6 1 1 1 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|292656449|ref|YP_003536346.1| - 4.6e-06 27.0 0.0 1.2e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|292656449|ref|YP_003536346.1| - 0.034 14.4 0.1 0.7 10.1 0.1 2.7 1 1 0 1 1 1 0 Toprim domain AP_endonuc_2 PF01261.24 gi|292656450|ref|YP_003536347.1| - 3.2e-24 85.6 2.4 4.7e-24 85.0 2.4 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Paramyxo_PNT PF14320.6 gi|292656450|ref|YP_003536347.1| - 0.11 11.6 0.3 2.6 7.2 0.1 2.1 2 0 0 2 2 2 0 Phosphoprotein P region PNT disordered DUF3311 PF11755.8 gi|292656451|ref|YP_003536348.1| - 2.4e-14 53.0 15.1 2.6e-14 52.9 15.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.12 gi|292656451|ref|YP_003536348.1| - 0.43 10.1 0.8 0.49 9.9 0.8 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) SSF PF00474.17 gi|292656452|ref|YP_003536349.1| - 4e-46 157.7 29.9 5.8e-46 157.2 29.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Mtf2_C PF14061.6 gi|292656453|ref|YP_003536350.1| - 0.16 12.1 0.0 6.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Polycomb-like MTF2 factor 2 Acetyltransf_1 PF00583.25 gi|292656454|ref|YP_003536351.1| - 2.8e-15 56.6 0.0 3e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292656454|ref|YP_003536351.1| - 3.2e-10 40.1 0.0 4.7e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656454|ref|YP_003536351.1| - 2.6e-09 37.4 0.0 3.5e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656454|ref|YP_003536351.1| - 8.1e-05 22.5 0.0 0.00019 21.4 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|292656454|ref|YP_003536351.1| - 0.00053 20.7 0.2 0.00081 20.1 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656454|ref|YP_003536351.1| - 0.0017 18.4 0.1 0.009 16.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|292656454|ref|YP_003536351.1| - 0.045 13.4 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292656454|ref|YP_003536351.1| - 0.049 13.8 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|292656454|ref|YP_003536351.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ YqcI_YcgG PF08892.11 gi|292656455|ref|YP_003536352.1| - 8e-75 251.3 0.0 9.4e-75 251.1 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|292656456|ref|YP_003536353.1| - 4.8e-37 127.8 0.1 8.6e-37 127.0 0.1 1.4 1 1 0 1 1 1 1 Isochorismatase family PRA1 PF03208.19 gi|292656457|ref|YP_003536354.1| - 0.034 13.8 0.9 0.056 13.1 0.9 1.3 1 0 0 1 1 1 0 PRA1 family protein DUF998 PF06197.13 gi|292656457|ref|YP_003536354.1| - 0.49 10.0 17.8 0.77 9.3 17.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) MFS_MOT1 PF16983.5 gi|292656458|ref|YP_003536355.1| - 3.7e-43 146.4 37.6 1.6e-23 83.2 12.0 3.3 3 0 0 3 3 3 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|292656458|ref|YP_003536355.1| - 1.4e-08 33.9 21.2 8.9e-08 31.3 6.5 2.4 1 1 0 2 2 2 2 Sulfate permease family vWA-TerF-like PF10138.9 gi|292656462|ref|YP_003536359.1| - 0.034 14.3 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 vWA found in TerF C terminus DUF1405 PF07187.11 gi|292656463|ref|YP_003536360.1| - 2.6e-51 173.7 12.8 3.3e-51 173.4 12.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SOR_SNZ PF01680.17 gi|292656464|ref|YP_003536361.1| - 5.6e-103 343.1 4.9 7.2e-103 342.8 4.9 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|292656464|ref|YP_003536361.1| - 8.3e-10 38.4 3.6 6.1e-05 22.5 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|292656464|ref|YP_003536361.1| - 0.0043 16.2 0.3 1.2 8.2 0.1 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|292656464|ref|YP_003536361.1| - 0.024 13.8 0.0 0.82 8.8 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Zot PF05707.12 gi|292656464|ref|YP_003536361.1| - 0.056 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Usp PF00582.26 gi|292656465|ref|YP_003536362.1| - 3.6e-16 59.9 0.3 4.5e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|292656465|ref|YP_003536362.1| - 0.062 13.2 0.1 0.088 12.7 0.1 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain GHMP_kinases_N PF00288.26 gi|292656466|ref|YP_003536363.1| - 1.3e-13 50.9 2.6 1.3e-13 50.9 2.6 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|292656466|ref|YP_003536363.1| - 1.9e-06 28.2 0.1 4.2e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal HisKA_7TM PF16927.5 gi|292656467|ref|YP_003536364.1| - 7.1e-55 186.4 13.9 9.6e-55 186.0 13.9 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|292656467|ref|YP_003536364.1| - 9.9e-16 57.5 0.8 1.5e-15 57.0 0.2 1.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|292656467|ref|YP_003536364.1| - 3.1e-15 56.7 0.6 1.1e-14 54.8 0.6 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|292656467|ref|YP_003536364.1| - 7.3e-12 45.5 0.3 2.9e-11 43.6 0.3 2.0 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|292656467|ref|YP_003536364.1| - 4e-11 42.9 0.0 7.2e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|292656467|ref|YP_003536364.1| - 8.9e-07 28.8 0.3 4e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|292656467|ref|YP_003536364.1| - 0.0025 18.0 0.0 0.0067 16.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|292656467|ref|YP_003536364.1| - 0.0025 17.7 0.1 0.0062 16.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|292656467|ref|YP_003536364.1| - 0.15 11.8 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amino_oxidase PF01593.24 gi|292656468|ref|YP_003536365.1| - 5.1e-40 138.1 0.2 9.9e-40 137.2 0.2 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|292656468|ref|YP_003536365.1| - 5e-15 55.5 0.4 1.8e-14 53.7 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|292656468|ref|YP_003536365.1| - 1.9e-09 37.6 4.7 2.3e-08 34.0 4.7 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292656468|ref|YP_003536365.1| - 2.2e-06 27.1 0.7 0.00039 19.8 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292656468|ref|YP_003536365.1| - 8.9e-06 25.0 3.2 1.4e-05 24.4 1.4 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|292656468|ref|YP_003536365.1| - 2.5e-05 23.8 0.1 0.00012 21.6 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292656468|ref|YP_003536365.1| - 0.0006 18.6 2.2 0.0032 16.2 0.8 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|292656468|ref|YP_003536365.1| - 0.00077 20.0 2.4 0.0023 18.5 0.3 2.5 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|292656468|ref|YP_003536365.1| - 0.0012 18.9 1.2 0.14 12.1 0.2 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|292656468|ref|YP_003536365.1| - 0.0046 16.2 0.2 0.059 12.6 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|292656468|ref|YP_003536365.1| - 0.0066 15.6 0.1 0.0066 15.6 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|292656468|ref|YP_003536365.1| - 0.014 14.6 1.0 0.036 13.3 0.5 1.9 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|292656468|ref|YP_003536365.1| - 0.051 13.5 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|292656468|ref|YP_003536365.1| - 0.062 12.5 0.9 0.11 11.7 0.4 1.6 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|292656468|ref|YP_003536365.1| - 0.064 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|292656468|ref|YP_003536365.1| - 0.1 11.4 0.4 0.38 9.5 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|292656468|ref|YP_003536365.1| - 0.14 11.4 0.1 0.26 10.6 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MCRA PF06100.11 gi|292656468|ref|YP_003536365.1| - 0.28 9.9 1.2 0.32 9.7 0.1 1.6 2 0 0 2 2 2 0 MCRA family TetR_C_6 PF13977.6 gi|292656469|ref|YP_003536366.1| - 1.8e-11 44.2 3.9 1.8e-11 44.2 3.9 2.1 3 1 0 3 3 3 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|292656469|ref|YP_003536366.1| - 6.8e-11 41.8 0.2 1.2e-10 41.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|292656469|ref|YP_003536366.1| - 1.6e-07 31.4 0.0 4.1e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|292656469|ref|YP_003536366.1| - 5.5e-06 26.6 0.6 1.4e-05 25.3 0.4 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|292656469|ref|YP_003536366.1| - 0.0012 19.0 2.8 0.0012 19.0 2.8 2.4 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|292656469|ref|YP_003536366.1| - 0.02 15.0 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|292656469|ref|YP_003536366.1| - 0.032 14.3 0.4 0.077 13.0 0.1 1.8 2 1 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_17 PF17922.1 gi|292656469|ref|YP_003536366.1| - 0.17 12.0 0.0 0.43 10.7 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|292656470|ref|YP_003536367.1| - 9.6e-61 204.1 28.2 2.7e-36 124.6 7.7 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|292656470|ref|YP_003536367.1| - 2.7e-05 24.2 44.3 0.00046 20.3 18.4 5.3 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain UPF0182 PF03699.13 gi|292656470|ref|YP_003536367.1| - 0.21 9.7 0.8 0.46 8.6 0.8 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) SieB PF14163.6 gi|292656470|ref|YP_003536367.1| - 2.2 7.7 3.6 12 5.4 0.4 2.9 2 1 1 3 3 3 0 Super-infection exclusion protein B DUF3546 PF12066.8 gi|292656471|ref|YP_003536368.1| - 0.087 13.0 0.5 3.7 7.8 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3546) HTH_20 PF12840.7 gi|292656472|ref|YP_003536369.1| - 1.8e-07 31.1 0.0 4.1e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Lar_restr_allev PF14354.6 gi|292656472|ref|YP_003536369.1| - 0.014 15.8 2.2 3.1 8.2 0.3 3.1 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|292656472|ref|YP_003536369.1| - 0.089 12.8 0.6 0.089 12.8 0.6 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292656472|ref|YP_003536369.1| - 0.13 11.8 6.1 1.8 8.1 0.0 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|292656472|ref|YP_003536369.1| - 0.17 11.8 0.1 0.17 11.8 0.1 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|292656472|ref|YP_003536369.1| - 0.21 11.6 9.3 0.79 9.8 1.2 2.9 3 0 0 3 3 3 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|292656472|ref|YP_003536369.1| - 4.3 7.5 11.3 5.9 7.1 0.2 4.0 4 0 0 4 4 4 0 Zinc ribbon domain Pyr_redox_2 PF07992.14 gi|292656473|ref|YP_003536370.1| - 2.8e-44 151.5 0.0 3.6e-44 151.2 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|292656473|ref|YP_003536370.1| - 4.2e-09 36.2 0.0 4.1e-08 33.0 0.0 2.6 3 0 0 3 3 3 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 gi|292656473|ref|YP_003536370.1| - 2.5e-08 34.3 0.0 0.00031 21.2 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292656473|ref|YP_003536370.1| - 2e-07 30.6 0.0 5e-07 29.3 0.0 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|292656473|ref|YP_003536370.1| - 0.0066 16.7 1.1 0.23 11.7 0.0 3.3 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|292656473|ref|YP_003536370.1| - 0.012 14.3 0.0 2.3 6.8 0.0 3.2 3 1 1 4 4 4 0 HI0933-like protein NAD_binding_9 PF13454.6 gi|292656473|ref|YP_003536370.1| - 0.029 14.4 4.6 2.6 8.0 0.0 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|292656473|ref|YP_003536370.1| - 0.091 12.0 0.0 0.28 10.4 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DAO PF01266.24 gi|292656473|ref|YP_003536370.1| - 0.13 11.8 1.6 1.7 8.1 0.0 3.0 3 1 0 4 4 4 0 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|292656473|ref|YP_003536370.1| - 0.14 11.3 0.0 3.3 6.7 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|292656473|ref|YP_003536370.1| - 0.33 10.0 3.7 5.3 6.0 0.0 3.1 2 1 1 3 3 3 0 FAD binding domain DUF1707 PF08044.11 gi|292656474|ref|YP_003536371.1| - 0.084 12.9 0.1 0.2 11.7 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1707) GCHY-1 PF02649.14 gi|292656476|ref|YP_003536373.1| - 2.6e-75 253.3 0.5 2.9e-75 253.1 0.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 TrmB PF01978.19 gi|292656477|ref|YP_003536374.1| - 1.3e-19 69.8 0.2 3.3e-19 68.5 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PDCD7 PF16021.5 gi|292656477|ref|YP_003536374.1| - 0.026 13.7 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Programmed cell death protein 7 HTH_9 PF08221.11 gi|292656477|ref|YP_003536374.1| - 0.052 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PLDc_2 PF13091.6 gi|292656477|ref|YP_003536374.1| - 0.079 12.9 0.0 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 PLD-like domain Thioredox_DsbH PF03190.15 gi|292656478|ref|YP_003536375.1| - 2.4e-26 92.7 0.0 3.9e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|292656478|ref|YP_003536375.1| - 5.4e-13 48.9 0.0 1.4e-12 47.6 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.20 gi|292656478|ref|YP_003536375.1| - 4.3e-06 26.7 0.0 7.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|292656478|ref|YP_003536375.1| - 0.00022 21.6 0.0 0.00045 20.6 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_127 PF07944.12 gi|292656478|ref|YP_003536375.1| - 0.0082 14.7 0.0 0.48 8.9 0.0 2.1 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_76 PF03663.14 gi|292656478|ref|YP_003536375.1| - 0.02 14.4 0.3 6 6.3 0.1 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.11 gi|292656478|ref|YP_003536375.1| - 0.056 12.7 0.0 3.1 6.9 0.0 2.3 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) FxsA PF04186.13 gi|292656479|ref|YP_003536376.1| - 9.2e-32 109.4 7.0 1.1e-31 109.1 7.0 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SeqA_N PF17206.3 gi|292656481|ref|YP_003536378.1| - 0.073 12.4 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 SeqA protein N-terminal domain Na_Ca_ex PF01699.24 gi|292656482|ref|YP_003536379.1| - 1.4e-40 138.7 29.7 7.5e-22 77.9 15.0 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Calcyon PF06387.11 gi|292656482|ref|YP_003536379.1| - 0.25 11.3 0.0 0.52 10.3 0.0 1.4 1 0 0 1 1 1 0 D1 dopamine receptor-interacting protein (calcyon) Acetyltransf_17 PF17668.1 gi|292656483|ref|YP_003536380.1| - 1.1e-21 77.8 1.5 4.3e-21 75.9 1.5 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656483|ref|YP_003536380.1| - 2.4e-21 76.2 0.1 8.1e-20 71.2 0.0 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|292656483|ref|YP_003536380.1| - 2.1e-20 73.1 0.1 4.1e-20 72.1 0.1 1.5 1 0 0 1 1 1 1 Sterol carrier protein domain Peptidase_S66 PF02016.15 gi|292656487|ref|YP_003536384.1| - 1.1e-22 80.4 0.0 1.6e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|292656487|ref|YP_003536384.1| - 2e-21 76.8 0.0 2.8e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain HTH_12 PF08461.10 gi|292656487|ref|YP_003536384.1| - 0.19 11.7 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain CPSase_L_D2 PF02786.17 gi|292656488|ref|YP_003536385.1| - 1.6e-95 318.6 0.1 5.8e-57 192.6 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|292656488|ref|YP_003536385.1| - 7.9e-25 87.6 0.0 1.7e-24 86.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|292656488|ref|YP_003536385.1| - 4.5e-13 49.1 0.0 5.2e-08 32.7 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|292656488|ref|YP_003536385.1| - 8.3e-13 48.2 0.0 5.1e-05 23.0 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|292656488|ref|YP_003536385.1| - 1.6e-12 47.4 0.0 4.2e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|292656488|ref|YP_003536385.1| - 2.4e-09 37.4 0.1 0.00041 20.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain NAD_binding_10 PF13460.6 gi|292656489|ref|YP_003536386.1| - 1.2e-43 149.2 5.4 1.5e-43 148.8 5.4 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|292656489|ref|YP_003536386.1| - 1.6e-13 50.8 0.0 2.3e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|292656489|ref|YP_003536386.1| - 2e-10 40.5 0.2 2.9e-10 40.0 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|292656489|ref|YP_003536386.1| - 2.4e-06 26.8 0.0 3.2e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|292656489|ref|YP_003536386.1| - 0.00084 19.6 0.6 0.0015 18.7 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain DapB_N PF01113.20 gi|292656489|ref|YP_003536386.1| - 0.051 13.7 0.1 0.082 13.0 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_4 PF07993.12 gi|292656489|ref|YP_003536386.1| - 0.1 11.7 0.1 5.8 6.0 0.1 2.2 2 0 0 2 2 2 0 Male sterility protein Semialdhyde_dh PF01118.24 gi|292656489|ref|YP_003536386.1| - 0.11 13.0 0.2 0.16 12.4 0.2 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_kinase PF01513.21 gi|292656490|ref|YP_003536387.1| - 4e-35 121.4 1.0 5e-35 121.1 1.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|292656490|ref|YP_003536387.1| - 0.095 12.3 0.4 0.31 10.7 0.2 1.9 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain ATPase PF06745.13 gi|292656491|ref|YP_003536388.1| - 3.4e-53 180.4 0.0 3.9e-53 180.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|292656491|ref|YP_003536388.1| - 3.3e-07 30.1 0.0 4.8e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|292656491|ref|YP_003536388.1| - 2.9e-06 26.8 0.0 0.012 14.9 0.0 2.2 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|292656491|ref|YP_003536388.1| - 2.2e-05 23.3 0.4 7.6e-05 21.5 0.4 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|292656491|ref|YP_003536388.1| - 0.00087 18.8 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|292656491|ref|YP_003536388.1| - 0.0037 17.0 0.0 0.011 15.4 0.0 1.8 1 1 1 2 2 2 1 AAA domain Rad51 PF08423.11 gi|292656491|ref|YP_003536388.1| - 0.017 14.4 0.0 0.022 14.0 0.0 1.3 1 0 0 1 1 1 0 Rad51 AAA_22 PF13401.6 gi|292656491|ref|YP_003536388.1| - 0.025 14.8 0.1 0.12 12.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|292656491|ref|YP_003536388.1| - 0.032 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|292656491|ref|YP_003536388.1| - 0.032 14.0 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.16 gi|292656491|ref|YP_003536388.1| - 0.051 13.0 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein MEDS PF14417.6 gi|292656491|ref|YP_003536388.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.6 gi|292656491|ref|YP_003536388.1| - 0.07 13.2 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|292656491|ref|YP_003536388.1| - 0.095 13.1 0.2 0.6 10.5 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain PPV_E1_C PF00519.17 gi|292656491|ref|YP_003536388.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Nitroreductase PF00881.24 gi|292656492|ref|YP_003536389.1| - 2e-29 102.8 0.0 3e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|292656492|ref|YP_003536389.1| - 1.3e-06 28.1 0.0 0.00069 19.2 0.1 2.9 2 1 0 2 2 2 2 Putative TM nitroreductase Usp PF00582.26 gi|292656493|ref|YP_003536390.1| - 1.1e-28 100.6 1.3 1.2e-28 100.4 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Chorismate_synt PF01264.21 gi|292656493|ref|YP_003536390.1| - 0.11 11.2 0.0 7.4 5.2 0.0 2.0 2 0 0 2 2 2 0 Chorismate synthase DUF87 PF01935.17 gi|292656494|ref|YP_003536391.1| - 1.3e-10 41.7 0.0 2.5e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|292656494|ref|YP_003536391.1| - 6.1e-08 31.7 0.3 0.00017 20.3 0.2 2.4 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|292656494|ref|YP_003536391.1| - 0.0019 18.2 0.0 2 8.4 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_10 PF12846.7 gi|292656494|ref|YP_003536391.1| - 0.0045 16.0 0.0 0.27 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain T2SSE PF00437.20 gi|292656494|ref|YP_003536391.1| - 0.0071 15.4 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 gi|292656494|ref|YP_003536391.1| - 0.0077 16.0 0.0 0.47 10.2 0.0 2.2 1 1 0 2 2 2 1 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|292656494|ref|YP_003536391.1| - 0.0086 15.0 0.0 0.02 13.9 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|292656494|ref|YP_003536391.1| - 0.028 13.8 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|292656494|ref|YP_003536391.1| - 0.029 14.7 0.0 0.21 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain HAS-barrel PF09378.10 gi|292656494|ref|YP_003536391.1| - 0.034 14.3 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 HAS barrel domain AAA_16 PF13191.6 gi|292656494|ref|YP_003536391.1| - 0.049 14.0 0.2 0.64 10.4 0.2 2.4 1 1 0 1 1 1 0 AAA ATPase domain DUF5633 PF18656.1 gi|292656495|ref|YP_003536392.1| - 0.19 11.6 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5633) NurA PF09376.10 gi|292656496|ref|YP_003536393.1| - 3e-12 46.8 0.0 4.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 NurA domain HAD_2 PF13419.6 gi|292656497|ref|YP_003536394.1| - 2.3e-22 79.9 0.0 2.7e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292656497|ref|YP_003536394.1| - 6.5e-12 46.2 0.2 8.4e-12 45.8 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292656497|ref|YP_003536394.1| - 5.1e-11 42.5 0.3 1.3e-10 41.1 0.3 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|292656497|ref|YP_003536394.1| - 2.5e-07 31.3 0.5 3.1e-07 31.0 0.5 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|292656497|ref|YP_003536394.1| - 0.00083 18.4 0.2 0.18 10.7 0.0 2.5 2 1 1 3 3 3 2 5' nucleotidase family DUF2240 PF09999.9 gi|292656499|ref|YP_003536396.1| - 2.5e-49 166.6 0.3 2.8e-49 166.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_S8e PF01201.22 gi|292656500|ref|YP_003536397.1| - 1.7e-32 112.5 2.6 1.9e-32 112.3 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Phage_attach PF05354.11 gi|292656500|ref|YP_003536397.1| - 0.0066 16.3 0.1 0.0085 16.0 0.1 1.3 1 0 0 1 1 1 1 Phage Head-Tail Attachment PhoU PF01895.19 gi|292656501|ref|YP_003536398.1| - 1.8e-20 73.1 6.9 9.7e-19 67.6 1.5 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|292656501|ref|YP_003536398.1| - 4.4e-12 45.6 0.0 1.1e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HisKA PF00512.25 gi|292656501|ref|YP_003536398.1| - 1.5 8.9 5.0 0.89 9.6 0.2 2.9 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain PBP_like_2 PF12849.7 gi|292656502|ref|YP_003536399.1| - 1.6e-30 106.8 0.5 2.3e-30 106.3 0.5 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|292656502|ref|YP_003536399.1| - 8.6e-18 64.2 0.0 2.4e-17 62.7 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|292656502|ref|YP_003536399.1| - 0.025 14.4 1.5 0.049 13.5 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.6 gi|292656502|ref|YP_003536399.1| - 0.034 13.9 0.0 0.053 13.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|292656502|ref|YP_003536399.1| - 0.096 12.1 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|292656503|ref|YP_003536400.1| - 4.6e-17 62.4 17.4 4.6e-17 62.4 17.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|292656504|ref|YP_003536401.1| - 7.9e-22 77.9 12.9 7.9e-22 77.9 12.9 4.1 2 2 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component SHR3_chaperone PF08229.11 gi|292656504|ref|YP_003536401.1| - 0.13 11.2 1.5 1.4 7.9 0.3 2.6 2 0 0 2 2 2 0 ER membrane protein SH3 HlyE PF06109.13 gi|292656504|ref|YP_003536401.1| - 0.93 8.7 2.1 1.8 7.8 2.1 1.4 1 0 0 1 1 1 0 Haemolysin E (HlyE) ABC_tran PF00005.27 gi|292656505|ref|YP_003536402.1| - 1.9e-30 106.2 0.0 3.8e-30 105.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656505|ref|YP_003536402.1| - 4.7e-11 43.0 0.0 0.00011 22.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656505|ref|YP_003536402.1| - 3.7e-08 33.1 0.3 5.6e-07 29.2 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292656505|ref|YP_003536402.1| - 2.5e-05 24.2 0.0 0.0038 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|292656505|ref|YP_003536402.1| - 0.00058 19.5 0.1 0.076 12.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|292656505|ref|YP_003536402.1| - 0.00072 19.5 0.0 0.0018 18.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|292656505|ref|YP_003536402.1| - 0.0012 18.5 0.0 0.003 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|292656505|ref|YP_003536402.1| - 0.0017 18.7 0.0 0.0041 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|292656505|ref|YP_003536402.1| - 0.0034 17.9 0.0 0.0071 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|292656505|ref|YP_003536402.1| - 0.0086 15.8 0.2 1.6 8.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain DeoRC PF00455.22 gi|292656505|ref|YP_003536402.1| - 0.0089 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_16 PF13191.6 gi|292656505|ref|YP_003536402.1| - 0.012 16.0 0.1 0.041 14.3 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|292656505|ref|YP_003536402.1| - 0.026 14.7 0.0 0.07 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF228 PF02989.14 gi|292656505|ref|YP_003536402.1| - 0.033 14.0 0.1 0.067 13.0 0.1 1.5 1 0 0 1 1 1 0 Lyme disease proteins of unknown function Rad17 PF03215.15 gi|292656505|ref|YP_003536402.1| - 0.066 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|292656505|ref|YP_003536402.1| - 0.08 12.1 0.0 0.11 11.7 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain PhoU PF01895.19 gi|292656506|ref|YP_003536403.1| - 2.1e-40 137.1 11.6 1.1e-20 73.9 2.3 2.1 2 0 0 2 2 2 2 PhoU domain AAA PF00004.29 gi|292656507|ref|YP_003536404.1| - 4.6e-101 334.5 0.0 1.6e-49 167.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292656507|ref|YP_003536404.1| - 8.3e-32 108.7 6.2 1.2e-16 60.2 1.0 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|292656507|ref|YP_003536404.1| - 7.2e-31 106.2 0.0 3.4e-30 104.0 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|292656507|ref|YP_003536404.1| - 3.2e-16 58.9 0.3 3.1e-15 55.7 0.3 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|292656507|ref|YP_003536404.1| - 1.9e-15 57.0 0.0 6.4e-07 29.3 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|292656507|ref|YP_003536404.1| - 4.2e-15 56.5 2.3 2.7e-06 27.9 0.2 4.4 3 2 1 4 4 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|292656507|ref|YP_003536404.1| - 5.6e-15 55.6 1.1 2.1e-06 27.8 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|292656507|ref|YP_003536404.1| - 1.2e-12 48.3 0.0 1.2e-05 25.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|292656507|ref|YP_003536404.1| - 1.3e-11 44.3 0.0 3.4e-05 23.2 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|292656507|ref|YP_003536404.1| - 5.3e-11 42.9 0.0 7.4e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|292656507|ref|YP_003536404.1| - 5.9e-11 42.8 0.7 0.00084 19.6 0.0 4.3 2 2 1 4 4 4 2 AAA domain IstB_IS21 PF01695.17 gi|292656507|ref|YP_003536404.1| - 5.2e-08 32.8 0.0 0.01 15.6 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|292656507|ref|YP_003536404.1| - 6.3e-08 33.2 0.0 0.0099 16.4 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|292656507|ref|YP_003536404.1| - 1.2e-07 31.8 0.0 0.0081 16.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|292656507|ref|YP_003536404.1| - 1.7e-07 31.0 1.3 1.8 8.1 0.0 4.6 4 0 0 4 4 4 1 AAA domain Sigma54_activat PF00158.26 gi|292656507|ref|YP_003536404.1| - 2.4e-07 30.6 0.1 0.029 14.1 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|292656507|ref|YP_003536404.1| - 1.2e-06 28.0 0.1 0.04 13.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|292656507|ref|YP_003536404.1| - 1.5e-06 27.9 0.0 0.018 14.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|292656507|ref|YP_003536404.1| - 2.2e-06 28.0 0.0 0.11 12.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|292656507|ref|YP_003536404.1| - 4.6e-06 27.0 0.0 0.034 14.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|292656507|ref|YP_003536404.1| - 7.2e-06 25.5 0.3 0.4 10.0 0.0 3.5 3 0 0 3 3 3 2 KaiC DUF815 PF05673.13 gi|292656507|ref|YP_003536404.1| - 1.2e-05 24.6 0.0 0.15 11.2 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.11 gi|292656507|ref|YP_003536404.1| - 1.3e-05 25.1 0.0 0.15 11.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|292656507|ref|YP_003536404.1| - 1.3e-05 25.2 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|292656507|ref|YP_003536404.1| - 1.4e-05 25.7 0.0 0.22 12.0 0.0 3.0 3 0 0 3 3 2 2 ABC transporter PhoH PF02562.16 gi|292656507|ref|YP_003536404.1| - 1.5e-05 24.5 0.2 0.41 10.1 0.0 3.3 3 0 0 3 3 3 2 PhoH-like protein AAA_11 PF13086.6 gi|292656507|ref|YP_003536404.1| - 1.5e-05 24.9 0.1 0.2 11.4 0.0 2.4 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|292656507|ref|YP_003536404.1| - 2.1e-05 23.9 0.3 0.049 12.9 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.6 gi|292656507|ref|YP_003536404.1| - 3.3e-05 23.7 0.0 0.13 12.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|292656507|ref|YP_003536404.1| - 5.2e-05 23.3 0.0 1.2 9.0 0.0 4.0 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|292656507|ref|YP_003536404.1| - 7.6e-05 22.1 0.0 0.37 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|292656507|ref|YP_003536404.1| - 8.8e-05 21.8 0.0 0.17 11.0 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|292656507|ref|YP_003536404.1| - 0.0001 22.1 0.2 0.57 9.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|292656507|ref|YP_003536404.1| - 0.00029 20.0 0.1 0.23 10.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|292656507|ref|YP_003536404.1| - 0.00031 21.2 0.0 0.76 10.2 0.0 3.7 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|292656507|ref|YP_003536404.1| - 0.00057 20.0 0.0 1.3 9.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|292656507|ref|YP_003536404.1| - 0.00061 19.7 0.3 0.49 10.3 0.0 3.1 4 0 0 4 4 2 1 NACHT domain AAA_19 PF13245.6 gi|292656507|ref|YP_003536404.1| - 0.00093 19.6 0.8 1.2 9.5 0.0 2.9 2 1 0 3 3 2 1 AAA domain Vps4_C PF09336.10 gi|292656507|ref|YP_003536404.1| - 0.0026 17.7 0.5 0.022 14.7 0.0 2.7 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Cytidylate_kin PF02224.18 gi|292656507|ref|YP_003536404.1| - 0.0029 17.4 0.1 2.4 7.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase IPT PF01745.16 gi|292656507|ref|YP_003536404.1| - 0.0033 16.9 0.4 1.2 8.5 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|292656507|ref|YP_003536404.1| - 0.0035 17.3 0.2 4.3 7.2 0.0 3.0 2 1 1 3 3 2 0 NTPase Bac_DnaA PF00308.18 gi|292656507|ref|YP_003536404.1| - 0.0045 16.9 0.0 2.5 7.9 0.0 2.8 2 2 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.15 gi|292656507|ref|YP_003536404.1| - 0.0081 16.2 0.0 4.7 7.2 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SKI PF01202.22 gi|292656507|ref|YP_003536404.1| - 0.0097 16.0 0.0 5.6 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase CPT PF07931.12 gi|292656507|ref|YP_003536404.1| - 0.011 15.6 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|292656507|ref|YP_003536404.1| - 0.013 15.5 0.0 0.93 9.4 0.0 2.6 2 1 1 3 3 2 0 Rad17 P-loop domain TniB PF05621.11 gi|292656507|ref|YP_003536404.1| - 0.014 14.9 0.0 7.2 6.0 0.0 3.4 4 0 0 4 4 3 0 Bacterial TniB protein Hydin_ADK PF17213.3 gi|292656507|ref|YP_003536404.1| - 0.014 15.6 0.2 5.5 7.2 0.0 3.0 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain Cytidylate_kin2 PF13189.6 gi|292656507|ref|YP_003536404.1| - 0.02 15.0 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.16 gi|292656507|ref|YP_003536404.1| - 0.02 13.8 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|292656507|ref|YP_003536404.1| - 0.024 14.4 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.12 gi|292656507|ref|YP_003536404.1| - 0.027 14.1 0.0 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|292656507|ref|YP_003536404.1| - 0.028 14.5 0.0 4.7 7.3 0.0 2.4 2 0 0 2 2 2 0 Torsin KAP_NTPase PF07693.14 gi|292656507|ref|YP_003536404.1| - 0.048 12.9 0.0 4.2 6.5 0.0 2.4 2 1 0 2 2 2 0 KAP family P-loop domain T2SSE PF00437.20 gi|292656507|ref|YP_003536404.1| - 0.11 11.5 0.0 9.1 5.2 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Guanylate_kin PF00625.21 gi|292656507|ref|YP_003536404.1| - 0.13 12.0 0.4 47 3.6 0.0 3.6 3 1 1 4 4 3 0 Guanylate kinase DUF111 PF01969.17 gi|292656508|ref|YP_003536405.1| - 3.5e-128 427.8 0.9 5e-128 427.3 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF111 Zip PF02535.22 gi|292656508|ref|YP_003536405.1| - 0.12 11.6 8.1 0.17 11.0 8.1 1.3 1 0 0 1 1 1 0 ZIP Zinc transporter DUF460 PF04312.13 gi|292656509|ref|YP_003536406.1| - 0.0064 16.2 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) VbhA PF18495.1 gi|292656509|ref|YP_003536406.1| - 0.065 13.1 4.0 7.9 6.4 0.1 3.0 2 0 0 2 2 2 0 Antitoxin VbhA Big_3_3 PF13750.6 gi|292656509|ref|YP_003536406.1| - 0.098 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Rad51 PF08423.11 gi|292656510|ref|YP_003536407.1| - 7.2e-31 107.4 0.0 9.2e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|292656510|ref|YP_003536407.1| - 4.1e-13 49.3 1.0 6.2e-13 48.8 1.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|292656510|ref|YP_003536407.1| - 4.5e-13 49.3 0.1 5.1e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|292656510|ref|YP_003536407.1| - 2e-10 40.4 0.0 1.4e-09 37.7 0.0 2.0 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|292656510|ref|YP_003536407.1| - 2.3e-07 30.7 0.0 2.6e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|292656510|ref|YP_003536407.1| - 4.5e-07 29.8 0.0 8.3e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|292656510|ref|YP_003536407.1| - 1e-05 26.0 0.2 1.4e-05 25.5 0.2 1.1 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|292656510|ref|YP_003536407.1| - 0.0017 17.7 0.0 0.0037 16.6 0.0 1.6 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|292656510|ref|YP_003536407.1| - 0.02 14.6 0.2 0.066 12.9 0.1 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein CobA_CobO_BtuR PF02572.15 gi|292656510|ref|YP_003536407.1| - 0.026 14.8 1.3 0.097 12.9 1.3 2.0 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ATPase_2 PF01637.18 gi|292656510|ref|YP_003536407.1| - 0.061 13.2 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CBS PF00571.28 gi|292656511|ref|YP_003536408.1| - 5.8e-40 135.5 10.3 3.4e-14 53.0 0.3 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|292656511|ref|YP_003536408.1| - 0.00028 21.6 0.4 0.014 16.1 0.0 3.0 2 2 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L9_C PF03948.14 gi|292656511|ref|YP_003536408.1| - 0.095 13.2 0.1 13 6.3 0.0 2.7 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain T2SSE PF00437.20 gi|292656512|ref|YP_003536409.1| - 6.2e-42 143.5 0.0 1e-41 142.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|292656512|ref|YP_003536409.1| - 0.0056 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|292656512|ref|YP_003536409.1| - 0.036 13.8 0.2 0.17 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|292656512|ref|YP_003536409.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSF PF00482.23 gi|292656513|ref|YP_003536410.1| - 3.4e-35 120.7 18.0 3.1e-19 69.2 0.3 3.7 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F E1-E2_ATPase PF00122.20 gi|292656513|ref|YP_003536410.1| - 3 7.3 11.8 3.2 7.2 0.0 3.6 4 0 0 4 4 4 0 E1-E2 ATPase Big_1 PF02369.16 gi|292656514|ref|YP_003536411.1| - 4.1e-05 23.5 6.1 4.1e-05 23.5 6.1 5.2 4 1 1 5 5 5 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|292656514|ref|YP_003536411.1| - 0.016 15.3 1.2 0.032 14.4 0.3 2.0 2 0 0 2 2 2 0 Macroglobulin domain MG4 DUF824 PF05688.11 gi|292656514|ref|YP_003536411.1| - 0.017 14.9 0.6 0.017 14.9 0.6 2.7 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF2613 PF11021.8 gi|292656514|ref|YP_003536411.1| - 0.033 14.3 1.0 0.033 14.3 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF2771 PF10969.8 gi|292656514|ref|YP_003536411.1| - 0.17 12.0 1.0 0.65 10.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2771) Big_1 PF02369.16 gi|292656515|ref|YP_003536412.1| - 2.3e-05 24.3 0.9 2.3e-05 24.3 0.9 3.4 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 1) HAD_2 PF13419.6 gi|292656516|ref|YP_003536413.1| - 1.5e-13 51.2 0.0 1.9e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292656516|ref|YP_003536413.1| - 1.4e-12 48.3 0.7 3.7e-12 47.0 0.7 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|292656516|ref|YP_003536413.1| - 0.0028 18.1 0.1 0.0033 17.8 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292656516|ref|YP_003536413.1| - 0.028 14.5 0.1 0.11 12.5 0.1 2.1 1 1 0 1 1 1 0 HAD-hyrolase-like Put_Phosphatase PF06888.12 gi|292656516|ref|YP_003536413.1| - 0.06 12.7 0.2 0.11 11.8 0.0 1.4 2 0 0 2 2 2 0 Putative Phosphatase Hydrolase_6 PF13344.6 gi|292656516|ref|YP_003536413.1| - 0.081 13.0 0.0 0.2 11.8 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Pox_I5 PF04713.12 gi|292656517|ref|YP_003536414.1| - 0.078 13.0 0.2 0.54 10.3 0.0 2.1 2 0 0 2 2 2 0 Poxvirus protein I5 FxsA PF04186.13 gi|292656518|ref|YP_003536415.1| - 0.12 12.5 0.2 0.19 11.8 0.2 1.2 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein Cob_adeno_trans PF01923.18 gi|292656521|ref|YP_003536418.1| - 9.2e-57 191.7 0.0 1e-56 191.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ABATE PF07336.11 gi|292656521|ref|YP_003536418.1| - 0.065 13.9 8.1 0.049 14.3 5.8 1.8 1 1 1 2 2 2 0 Putative stress-induced transcription regulator GST_N_3 PF13417.6 gi|292656522|ref|YP_003536419.1| - 5.2e-15 55.6 0.0 6.3e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|292656522|ref|YP_003536419.1| - 1.7e-13 50.6 0.0 2.1e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|292656522|ref|YP_003536419.1| - 5.8e-13 49.0 0.0 6.5e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|292656522|ref|YP_003536419.1| - 1.7e-07 31.5 0.0 2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|292656522|ref|YP_003536419.1| - 0.0081 16.5 0.0 0.0095 16.3 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|292656522|ref|YP_003536419.1| - 0.11 12.9 0.1 0.18 12.2 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain ZnuA PF01297.17 gi|292656523|ref|YP_003536420.1| - 4.6e-42 144.2 0.0 5.6e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|292656524|ref|YP_003536421.1| - 1.6e-32 112.9 0.0 2.1e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656524|ref|YP_003536421.1| - 1.1e-11 45.1 0.5 2.2e-05 24.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656524|ref|YP_003536421.1| - 2e-05 24.1 0.0 7e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292656524|ref|YP_003536421.1| - 2.2e-05 24.1 0.0 5.7e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|292656524|ref|YP_003536421.1| - 0.00063 19.5 0.1 0.0021 17.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|292656524|ref|YP_003536421.1| - 0.00085 19.9 0.0 0.0013 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|292656524|ref|YP_003536421.1| - 0.001 18.9 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|292656524|ref|YP_003536421.1| - 0.0015 18.9 0.2 0.0034 17.8 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|292656524|ref|YP_003536421.1| - 0.0034 17.7 0.1 0.023 15.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|292656524|ref|YP_003536421.1| - 0.0064 15.3 0.1 2.5 6.8 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class NTPase_1 PF03266.15 gi|292656524|ref|YP_003536421.1| - 0.0077 16.2 0.0 0.029 14.3 0.0 1.8 2 0 0 2 2 2 1 NTPase SbcCD_C PF13558.6 gi|292656524|ref|YP_003536421.1| - 0.02 15.1 0.6 0.7 10.2 0.6 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|292656524|ref|YP_003536421.1| - 0.036 14.2 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|292656524|ref|YP_003536421.1| - 0.037 13.9 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Spore_IV_A PF09547.10 gi|292656524|ref|YP_003536421.1| - 0.044 12.7 0.0 0.066 12.1 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) NB-ARC PF00931.22 gi|292656524|ref|YP_003536421.1| - 0.076 12.2 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|292656524|ref|YP_003536421.1| - 0.078 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|292656524|ref|YP_003536421.1| - 0.083 13.1 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|292656524|ref|YP_003536421.1| - 0.086 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF3584 PF12128.8 gi|292656524|ref|YP_003536421.1| - 0.096 10.2 0.0 0.13 9.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3987 PF13148.6 gi|292656524|ref|YP_003536421.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) RsgA_GTPase PF03193.16 gi|292656524|ref|YP_003536421.1| - 0.13 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|292656524|ref|YP_003536421.1| - 0.18 11.3 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC-3 PF00950.17 gi|292656525|ref|YP_003536422.1| - 3.6e-59 200.4 41.4 4.3e-59 200.1 41.4 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|292656525|ref|YP_003536422.1| - 9.4e-06 24.8 37.2 9.4e-06 24.8 37.2 1.6 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|292656525|ref|YP_003536422.1| - 0.044 13.9 1.0 0.11 12.7 1.0 1.6 1 0 0 1 1 1 0 DUF2407 C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|292656526|ref|YP_003536423.1| - 0.00022 21.1 0.4 0.00031 20.7 0.4 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|292656526|ref|YP_003536423.1| - 0.021 14.5 0.2 0.29 10.8 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RRN7 PF11781.8 gi|292656526|ref|YP_003536423.1| - 0.022 14.4 1.9 0.034 13.8 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF983 PF06170.12 gi|292656526|ref|YP_003536423.1| - 0.099 13.1 0.2 4.2 7.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) C1_2 PF03107.16 gi|292656526|ref|YP_003536423.1| - 0.12 12.7 2.9 0.61 10.5 2.9 1.9 1 1 0 1 1 1 0 C1 domain zf-H2C2_2 PF13465.6 gi|292656526|ref|YP_003536423.1| - 0.12 12.8 6.0 0.38 11.3 0.6 2.1 1 1 1 2 2 2 0 Zinc-finger double domain Zn_ribbon_SprT PF17283.2 gi|292656526|ref|YP_003536423.1| - 0.28 11.1 4.0 1.3 9.0 0.9 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RanBP PF00641.18 gi|292656526|ref|YP_003536423.1| - 1.9 7.9 6.1 7 6.1 1.7 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Aminotran_5 PF00266.19 gi|292656527|ref|YP_003536424.1| - 1e-09 37.8 0.0 1.6e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|292656527|ref|YP_003536424.1| - 3.9e-06 26.0 0.0 6.2e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|292656527|ref|YP_003536424.1| - 0.015 14.5 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|292656527|ref|YP_003536424.1| - 0.034 13.3 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II GDC-P PF02347.16 gi|292656528|ref|YP_003536425.1| - 2.3e-102 343.0 0.0 2.8e-102 342.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|292656528|ref|YP_003536425.1| - 1.8e-05 23.5 0.0 2.3e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|292656528|ref|YP_003536425.1| - 0.0083 15.1 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Macscav_rec PF03523.13 gi|292656528|ref|YP_003536425.1| - 0.068 13.1 0.0 0.5 10.3 0.0 2.2 2 0 0 2 2 2 0 Macrophage scavenger receptor GCV_H PF01597.19 gi|292656529|ref|YP_003536426.1| - 2.5e-43 146.9 0.0 2.7e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|292656529|ref|YP_003536426.1| - 0.00069 19.4 0.1 0.014 15.2 0.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|292656529|ref|YP_003536426.1| - 0.018 15.0 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GCV_T PF01571.21 gi|292656530|ref|YP_003536427.1| - 5.7e-86 288.0 0.1 7e-86 287.7 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|292656530|ref|YP_003536427.1| - 1.6e-19 69.5 0.1 3.2e-19 68.6 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|292656530|ref|YP_003536427.1| - 0.0017 18.6 0.2 0.52 10.5 0.0 2.3 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.9 gi|292656530|ref|YP_003536427.1| - 0.011 16.1 0.0 2.7 8.4 0.0 2.2 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus ABC_tran PF00005.27 gi|292656531|ref|YP_003536428.1| - 2.6e-28 99.2 0.0 3.7e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656531|ref|YP_003536428.1| - 2.6e-06 27.5 0.8 0.049 13.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656531|ref|YP_003536428.1| - 5.9e-05 22.6 0.0 0.14 11.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|292656531|ref|YP_003536428.1| - 0.0011 18.7 0.0 0.0035 17.1 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|292656531|ref|YP_003536428.1| - 0.0016 18.6 0.1 0.024 14.9 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|292656531|ref|YP_003536428.1| - 0.014 15.0 0.4 0.043 13.4 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|292656531|ref|YP_003536428.1| - 0.035 13.8 0.9 0.13 11.9 0.9 2.0 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|292656531|ref|YP_003536428.1| - 0.099 12.0 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|292656531|ref|YP_003536428.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|292656531|ref|YP_003536428.1| - 0.15 12.2 0.1 0.33 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|292656531|ref|YP_003536428.1| - 0.26 10.9 0.0 0.34 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain CbiQ PF02361.16 gi|292656532|ref|YP_003536429.1| - 1.2e-34 119.8 6.9 1.6e-34 119.5 6.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein PDGLE PF13190.6 gi|292656533|ref|YP_003536430.1| - 1.3e-08 34.6 3.9 2.3e-08 33.8 2.7 1.9 1 1 1 2 2 2 1 PDGLE domain PhoR PF11808.8 gi|292656533|ref|YP_003536430.1| - 5 7.6 5.5 0.66 10.4 1.1 1.7 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR CbiM PF01891.16 gi|292656534|ref|YP_003536431.1| - 3.8e-62 209.8 20.9 4.2e-62 209.6 20.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PEMT PF04191.13 gi|292656534|ref|YP_003536431.1| - 3.3 8.2 7.6 0.63 10.5 2.3 2.3 2 0 0 2 2 2 0 Phospholipid methyltransferase DUF2512 PF10710.9 gi|292656534|ref|YP_003536431.1| - 8.1 6.1 8.0 4.5 6.9 5.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2512) NikR_C PF08753.11 gi|292656535|ref|YP_003536432.1| - 9e-25 86.6 3.8 1.3e-24 86.1 3.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|292656535|ref|YP_003536432.1| - 2.1e-05 24.3 0.0 4.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family GGDEF_2 PF17853.1 gi|292656535|ref|YP_003536432.1| - 0.012 15.8 0.1 0.023 14.9 0.1 1.6 1 1 0 1 1 1 0 GGDEF-like domain ParD_antitoxin PF03693.14 gi|292656535|ref|YP_003536432.1| - 0.047 14.1 0.0 0.095 13.1 0.0 1.5 1 1 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HicB_lk_antitox PF15919.5 gi|292656535|ref|YP_003536432.1| - 0.047 13.8 0.0 0.098 12.8 0.0 1.6 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ACT_6 PF13740.6 gi|292656535|ref|YP_003536432.1| - 0.05 13.6 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 ACT domain Glyco_hydro81C PF17652.1 gi|292656535|ref|YP_003536432.1| - 0.12 11.6 0.1 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 81 C-terminal domain DUF2309 PF10070.9 gi|292656536|ref|YP_003536433.1| - 1.3e-262 873.5 0.0 1.5e-262 873.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) FdsD PF11390.8 gi|292656536|ref|YP_003536433.1| - 0.12 12.7 0.0 0.36 11.2 0.0 1.7 1 0 0 1 1 1 0 NADH-dependant formate dehydrogenase delta subunit FdsD Proton_antipo_M PF00361.20 gi|292656537|ref|YP_003536434.1| - 1.7e-41 142.4 13.5 1.7e-41 142.4 13.5 2.0 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|292656537|ref|YP_003536434.1| - 1.7e-08 34.4 0.1 6.8e-08 32.5 0.1 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_24 PF13412.6 gi|292656538|ref|YP_003536435.1| - 7.1e-15 54.3 0.1 1.2e-14 53.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|292656538|ref|YP_003536435.1| - 4.8e-13 48.7 1.2 8.3e-13 47.9 1.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|292656538|ref|YP_003536435.1| - 1.8e-07 31.0 0.0 3.6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|292656538|ref|YP_003536435.1| - 1.2e-06 28.2 0.0 2.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|292656538|ref|YP_003536435.1| - 2e-06 27.6 0.0 4.5e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292656538|ref|YP_003536435.1| - 1e-05 25.3 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|292656538|ref|YP_003536435.1| - 2.3e-05 24.5 0.0 4.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|292656538|ref|YP_003536435.1| - 5.3e-05 23.2 0.0 0.00012 22.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|292656538|ref|YP_003536435.1| - 5.4e-05 23.5 0.0 0.00017 21.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|292656538|ref|YP_003536435.1| - 0.00011 21.9 0.1 0.00021 20.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|292656538|ref|YP_003536435.1| - 0.00015 21.9 0.1 0.00035 20.6 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292656538|ref|YP_003536435.1| - 0.00089 19.2 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|292656538|ref|YP_003536435.1| - 0.0019 17.9 0.1 0.026 14.3 0.0 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|292656538|ref|YP_003536435.1| - 0.0021 17.8 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|292656538|ref|YP_003536435.1| - 0.0026 18.2 0.0 0.0058 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|292656538|ref|YP_003536435.1| - 0.0033 17.3 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|292656538|ref|YP_003536435.1| - 0.0052 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|292656538|ref|YP_003536435.1| - 0.0063 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Put_DNA-bind_N PF06971.13 gi|292656538|ref|YP_003536435.1| - 0.0067 16.4 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_Tnp_ISL3 PF13542.6 gi|292656538|ref|YP_003536435.1| - 0.0093 15.4 0.1 0.075 12.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|292656538|ref|YP_003536435.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix HTH_10 PF04967.12 gi|292656538|ref|YP_003536435.1| - 0.014 15.2 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Mga PF08280.11 gi|292656538|ref|YP_003536435.1| - 0.021 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Phage_antitermQ PF06530.12 gi|292656538|ref|YP_003536435.1| - 0.023 14.6 0.2 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 Phage antitermination protein Q TrmB PF01978.19 gi|292656538|ref|YP_003536435.1| - 0.028 14.3 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|292656538|ref|YP_003536435.1| - 0.038 13.6 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.6 gi|292656538|ref|YP_003536435.1| - 0.051 13.4 0.5 0.098 12.4 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|292656538|ref|YP_003536435.1| - 0.061 13.3 0.1 0.26 11.3 0.1 2.1 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_30 PF13556.6 gi|292656538|ref|YP_003536435.1| - 0.078 12.8 0.1 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_1 PF00126.27 gi|292656538|ref|YP_003536435.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GTP_EFTU PF00009.27 gi|292656539|ref|YP_003536436.1| - 6.2e-57 192.3 0.0 7.3e-57 192.1 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|292656539|ref|YP_003536436.1| - 1.3e-35 122.1 0.0 2.4e-35 121.2 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|292656539|ref|YP_003536436.1| - 5.5e-18 65.1 2.0 7.5e-17 61.5 0.9 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|292656539|ref|YP_003536436.1| - 2.4e-08 34.1 0.3 5.7e-07 29.6 0.3 2.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|292656539|ref|YP_003536436.1| - 0.0002 21.3 1.4 0.016 15.1 0.2 2.5 1 1 1 2 2 2 1 RsgA GTPase Ras PF00071.22 gi|292656539|ref|YP_003536436.1| - 0.00043 19.9 0.7 0.0022 17.6 0.2 2.1 2 1 0 2 2 2 1 Ras family GTP_EFTU_D4 PF14578.6 gi|292656539|ref|YP_003536436.1| - 0.0043 16.9 0.4 0.012 15.5 0.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|292656539|ref|YP_003536436.1| - 0.0043 17.1 0.1 1.6 8.7 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Septin PF00735.18 gi|292656539|ref|YP_003536436.1| - 0.0098 15.2 0.4 0.022 14.0 0.0 1.7 2 1 0 2 2 2 1 Septin SRPRB PF09439.10 gi|292656539|ref|YP_003536436.1| - 0.015 14.7 0.1 0.41 10.0 0.1 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|292656539|ref|YP_003536436.1| - 0.017 14.6 0.4 0.39 10.2 0.2 2.8 2 1 0 2 2 2 0 Ferrous iron transport protein B Gtr1_RagA PF04670.12 gi|292656539|ref|YP_003536436.1| - 0.023 14.1 0.0 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Roc PF08477.13 gi|292656539|ref|YP_003536436.1| - 0.029 14.6 0.0 3 8.1 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTP_transf_3 PF12804.7 gi|292656539|ref|YP_003536436.1| - 0.12 12.7 0.0 0.35 11.2 0.0 1.7 1 1 1 2 2 2 0 MobA-like NTP transferase domain cobW PF02492.19 gi|292656539|ref|YP_003536436.1| - 0.13 11.9 0.2 0.49 10.0 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NYN PF01936.18 gi|292656541|ref|YP_003536438.1| - 5.4e-19 69.1 0.1 6.5e-19 68.9 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.6 gi|292656541|ref|YP_003536438.1| - 0.00035 20.2 0.2 0.00041 20.0 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Hydrolase_like PF13242.6 gi|292656541|ref|YP_003536438.1| - 0.029 14.4 0.4 0.059 13.4 0.4 1.6 1 1 0 1 1 1 0 HAD-hyrolase-like PIN7 PF18475.1 gi|292656541|ref|YP_003536438.1| - 0.062 13.9 0.0 0.095 13.3 0.0 1.3 1 0 0 1 1 1 0 PIN domain CoA_binding_2 PF13380.6 gi|292656541|ref|YP_003536438.1| - 0.08 13.4 0.1 2.1 8.9 0.1 2.1 1 1 0 1 1 1 0 CoA binding domain TatD_DNase PF01026.21 gi|292656542|ref|YP_003536439.1| - 4.4e-19 68.8 0.0 7.8e-18 64.8 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.9 gi|292656543|ref|YP_003536440.1| - 6.5e-64 215.4 5.8 7.5e-64 215.2 5.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.16 gi|292656544|ref|YP_003536441.1| - 2.4e-15 56.3 1.2 2.4e-15 56.3 1.2 6.3 6 1 0 6 6 6 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|292656544|ref|YP_003536441.1| - 5.4e-09 36.2 0.6 5.4e-09 36.2 0.6 4.5 4 0 0 4 4 4 1 Invasin, domain 3 DUF824 PF05688.11 gi|292656544|ref|YP_003536441.1| - 0.2 11.5 2.4 13 5.7 0.0 3.5 2 1 1 3 3 3 0 Salmonella repeat of unknown function (DUF824) Pilin_N PF07790.11 gi|292656544|ref|YP_003536441.1| - 2 9.4 5.0 4.1 8.4 0.3 3.8 3 1 1 4 4 4 0 Archaeal Type IV pilin, N-terminal PKD PF00801.20 gi|292656544|ref|YP_003536441.1| - 2.2 8.2 13.0 1.2 9.0 3.4 4.5 3 1 1 4 4 4 0 PKD domain HMG_CoA_synt_N PF01154.17 gi|292656545|ref|YP_003536442.1| - 3.1e-26 92.3 0.0 4.5e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|292656545|ref|YP_003536442.1| - 9.8e-22 77.9 0.0 1.9e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal FMN_red PF03358.15 gi|292656545|ref|YP_003536442.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 NADPH-dependent FMN reductase TPR_10 PF13374.6 gi|292656545|ref|YP_003536442.1| - 0.13 12.2 0.3 0.98 9.4 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_31 PF13560.6 gi|292656547|ref|YP_003536444.1| - 3.5e-09 36.9 0.1 1.3e-08 35.1 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|292656547|ref|YP_003536444.1| - 2.2e-08 34.0 0.0 5.3e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|292656547|ref|YP_003536444.1| - 1.8e-05 24.7 0.0 3.5e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|292656547|ref|YP_003536444.1| - 0.013 15.9 0.0 0.068 13.6 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain YdaS_antitoxin PF15943.5 gi|292656547|ref|YP_003536444.1| - 0.016 15.0 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_11 PF08279.12 gi|292656547|ref|YP_003536444.1| - 0.048 13.6 0.1 0.46 10.5 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|292656547|ref|YP_003536444.1| - 0.083 12.5 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding YdjM PF04307.14 gi|292656548|ref|YP_003536445.1| - 5.6e-11 42.1 3.5 6.8e-11 41.8 3.5 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1772 PF08592.11 gi|292656548|ref|YP_003536445.1| - 0.93 9.8 4.8 0.84 9.9 2.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Acetyltransf_1 PF00583.25 gi|292656549|ref|YP_003536446.1| - 8.8e-15 55.0 0.0 1.2e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292656549|ref|YP_003536446.1| - 1.3e-09 38.1 0.0 1.7e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656549|ref|YP_003536446.1| - 6.5e-08 32.9 0.0 1.2e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|292656549|ref|YP_003536446.1| - 1.9e-06 28.6 0.0 3.2e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|292656549|ref|YP_003536446.1| - 8.2e-06 25.6 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292656549|ref|YP_003536446.1| - 0.001 19.2 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|292656549|ref|YP_003536446.1| - 0.0041 17.2 0.0 0.0072 16.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656549|ref|YP_003536446.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_18 PF18014.1 gi|292656549|ref|YP_003536446.1| - 0.2 11.5 0.0 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain RseC_MucC PF04246.12 gi|292656550|ref|YP_003536447.1| - 0.51 10.3 6.4 0.54 10.2 3.1 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Acetyltransf_3 PF13302.7 gi|292656551|ref|YP_003536448.1| - 4.8e-16 59.7 0.1 8.5e-16 58.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2127 PF09900.9 gi|292656552|ref|YP_003536449.1| - 0.02 15.2 0.6 0.02 15.2 0.6 2.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2127) AAA PF00004.29 gi|292656553|ref|YP_003536450.1| - 1e-10 42.2 0.2 3.5e-10 40.4 0.0 2.1 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|292656553|ref|YP_003536450.1| - 1.8e-05 24.5 0.0 3.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|292656553|ref|YP_003536450.1| - 0.00023 21.5 0.2 0.00084 19.6 0.2 2.1 1 0 0 1 1 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|292656553|ref|YP_003536450.1| - 0.00044 20.7 0.1 0.0026 18.2 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|292656553|ref|YP_003536450.1| - 0.00064 20.0 0.0 0.11 12.7 0.0 2.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|292656553|ref|YP_003536450.1| - 0.0011 18.7 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|292656553|ref|YP_003536450.1| - 0.0024 17.6 1.8 0.0052 16.5 1.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|292656553|ref|YP_003536450.1| - 0.0033 17.7 0.0 0.0095 16.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|292656553|ref|YP_003536450.1| - 0.0034 17.9 0.2 3 8.4 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|292656553|ref|YP_003536450.1| - 0.0036 17.5 0.3 0.036 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|292656553|ref|YP_003536450.1| - 0.0095 15.9 0.0 0.037 13.9 0.0 1.8 1 1 1 2 2 2 1 Rad17 P-loop domain AA_kinase PF00696.28 gi|292656553|ref|YP_003536450.1| - 0.012 15.2 0.2 0.035 13.7 0.1 1.8 2 0 0 2 2 2 0 Amino acid kinase family AAA_25 PF13481.6 gi|292656553|ref|YP_003536450.1| - 0.016 14.8 0.6 0.93 9.0 0.1 2.7 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|292656553|ref|YP_003536450.1| - 0.018 14.4 0.0 0.032 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|292656553|ref|YP_003536450.1| - 0.053 13.4 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Hydin_ADK PF17213.3 gi|292656553|ref|YP_003536450.1| - 0.058 13.7 0.6 0.12 12.6 0.4 1.7 1 1 0 1 1 1 0 Hydin Adenylate kinase-like domain RNA_helicase PF00910.22 gi|292656553|ref|YP_003536450.1| - 0.059 13.8 0.0 0.12 12.8 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|292656553|ref|YP_003536450.1| - 0.084 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|292656553|ref|YP_003536450.1| - 0.11 12.5 0.0 0.29 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.18 gi|292656553|ref|YP_003536450.1| - 0.16 11.8 0.0 0.86 9.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein ADH_N PF08240.12 gi|292656554|ref|YP_003536451.1| - 1.8e-26 92.1 1.0 4.2e-26 91.0 1.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|292656554|ref|YP_003536451.1| - 8.2e-25 87.3 0.2 1.4e-24 86.5 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|292656554|ref|YP_003536451.1| - 2.8e-05 23.5 1.5 5e-05 22.7 1.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|292656554|ref|YP_003536451.1| - 0.00016 22.7 0.0 0.00034 21.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|292656554|ref|YP_003536451.1| - 0.012 15.0 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|292656554|ref|YP_003536451.1| - 0.044 13.5 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SQS_PSY PF00494.19 gi|292656554|ref|YP_003536451.1| - 0.063 12.8 0.1 0.095 12.2 0.1 1.2 1 0 0 1 1 1 0 Squalene/phytoene synthase TrkA_N PF02254.18 gi|292656554|ref|YP_003536451.1| - 0.085 13.1 0.5 0.16 12.3 0.5 1.4 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_25 PF13649.6 gi|292656554|ref|YP_003536451.1| - 0.1 13.4 0.3 0.25 12.1 0.3 1.7 1 0 0 1 1 1 0 Methyltransferase domain Urocanase PF01175.18 gi|292656554|ref|YP_003536451.1| - 0.18 11.5 0.2 0.26 10.9 0.2 1.2 1 0 0 1 1 1 0 Urocanase Rossmann-like domain 3HCDH_N PF02737.18 gi|292656554|ref|YP_003536451.1| - 0.21 11.4 0.8 0.33 10.8 0.8 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFA PF04828.14 gi|292656555|ref|YP_003536452.1| - 0.014 15.7 0.1 1.5 9.2 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.10 gi|292656555|ref|YP_003536452.1| - 0.021 14.6 0.3 5.4 6.9 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.7 gi|292656555|ref|YP_003536452.1| - 0.036 14.1 0.5 0.065 13.3 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|292656555|ref|YP_003536452.1| - 0.044 13.9 0.6 0.14 12.3 0.6 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|292656555|ref|YP_003536452.1| - 0.057 13.4 5.2 0.19 11.7 5.2 1.9 1 1 0 1 1 1 0 Nudix N-terminal HypA PF01155.19 gi|292656555|ref|YP_003536452.1| - 0.064 13.3 0.1 0.077 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|292656555|ref|YP_003536452.1| - 0.077 13.2 1.7 4.2 7.6 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|292656555|ref|YP_003536452.1| - 0.093 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein RNA_POL_M_15KD PF02150.16 gi|292656555|ref|YP_003536452.1| - 0.11 12.3 1.2 15 5.6 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit ABC_tran PF00005.27 gi|292656556|ref|YP_003536453.1| - 3.8e-36 124.6 0.0 4.9e-36 124.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656556|ref|YP_003536453.1| - 5.1e-10 39.7 0.0 0.00086 19.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656556|ref|YP_003536453.1| - 3.2e-09 36.6 0.2 8.6e-08 31.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292656556|ref|YP_003536453.1| - 3.7e-05 24.2 0.2 5.2e-05 23.7 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|292656556|ref|YP_003536453.1| - 9.5e-05 22.2 0.0 0.00016 21.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292656556|ref|YP_003536453.1| - 0.00011 22.4 0.1 0.00036 20.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292656556|ref|YP_003536453.1| - 0.00012 21.8 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|292656556|ref|YP_003536453.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|292656556|ref|YP_003536453.1| - 0.0028 16.5 0.1 2.4 6.8 0.2 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|292656556|ref|YP_003536453.1| - 0.0068 16.3 0.0 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|292656556|ref|YP_003536453.1| - 0.025 15.1 0.0 0.043 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|292656556|ref|YP_003536453.1| - 0.027 14.5 0.1 3.8 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|292656556|ref|YP_003536453.1| - 0.028 14.8 0.1 0.53 10.7 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|292656556|ref|YP_003536453.1| - 0.03 13.9 0.1 0.11 12.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|292656556|ref|YP_003536453.1| - 0.032 14.4 0.2 0.071 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain PRC PF05239.16 gi|292656556|ref|YP_003536453.1| - 0.034 14.2 0.4 0.4 10.8 0.1 2.2 2 0 0 2 2 2 0 PRC-barrel domain AAA_19 PF13245.6 gi|292656556|ref|YP_003536453.1| - 0.075 13.4 0.0 0.1 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|292656556|ref|YP_003536453.1| - 0.08 12.6 0.0 0.15 11.8 0.0 1.4 1 1 1 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|292656556|ref|YP_003536453.1| - 0.099 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|292656556|ref|YP_003536453.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|292656556|ref|YP_003536453.1| - 0.12 11.5 0.0 0.71 9.0 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|292656556|ref|YP_003536453.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_27 PF13514.6 gi|292656556|ref|YP_003536453.1| - 0.14 11.8 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|292656556|ref|YP_003536453.1| - 0.15 10.8 0.0 0.6 8.9 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein DUF3987 PF13148.6 gi|292656556|ref|YP_003536453.1| - 0.17 10.9 0.0 0.44 9.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) CSD2 PF17876.1 gi|292656556|ref|YP_003536453.1| - 0.19 11.9 0.3 1.4 9.1 0.0 2.3 3 0 0 3 3 3 0 Cold shock domain SbcCD_C PF13558.6 gi|292656556|ref|YP_003536453.1| - 0.21 11.9 0.4 3 8.2 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|292656557|ref|YP_003536454.1| - 5.1e-17 62.2 8.9 5.1e-17 62.2 8.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|292656558|ref|YP_003536455.1| - 6.1e-64 215.5 1.5 7.4e-64 215.3 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 gi|292656558|ref|YP_003536455.1| - 5e-07 29.3 5.3 1e-06 28.3 5.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Lig_chan-Glu_bd PF10613.9 gi|292656558|ref|YP_003536455.1| - 8.8e-07 29.1 0.2 3.6e-06 27.2 0.1 2.1 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 gi|292656558|ref|YP_003536455.1| - 0.00013 21.7 0.1 0.0003 20.5 0.1 1.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|292656558|ref|YP_003536455.1| - 0.00016 21.7 0.1 0.00024 21.1 0.1 1.3 1 0 0 1 1 1 1 NMT1/THI5 like COX15-CtaA PF02628.15 gi|292656559|ref|YP_003536456.1| - 5.6e-11 42.1 32.6 1.5e-09 37.4 10.5 3.4 1 1 2 3 3 3 3 Cytochrome oxidase assembly protein OrfB_Zn_ribbon PF07282.11 gi|292656560|ref|YP_003536457.1| - 6.2e-23 80.5 1.9 1.3e-22 79.5 1.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|292656560|ref|YP_003536457.1| - 4.5e-18 65.6 0.0 1.4e-17 64.0 0.0 1.9 1 1 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|292656560|ref|YP_003536457.1| - 0.0012 19.1 1.2 0.003 17.9 1.2 1.6 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|292656560|ref|YP_003536457.1| - 0.0025 17.8 2.0 0.0093 16.0 1.4 2.1 2 0 0 2 2 2 1 Ribosomal L37ae protein family GP41 PF00517.17 gi|292656560|ref|YP_003536457.1| - 0.079 12.9 0.4 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 Retroviral envelope protein Zn_Tnp_IS1595 PF12760.7 gi|292656560|ref|YP_003536457.1| - 0.34 10.9 5.3 0.96 9.5 5.3 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Peptidase_M24 PF00557.24 gi|292656561|ref|YP_003536458.1| - 7.8e-11 42.0 1.0 1.2e-10 41.4 1.0 1.4 1 1 0 1 1 1 1 Metallopeptidase family M24 DUF732 PF05305.14 gi|292656561|ref|YP_003536458.1| - 0.1 13.0 0.7 0.23 11.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF732) PTA_PTB PF01515.19 gi|292656562|ref|YP_003536459.1| - 4.7e-98 328.4 0.0 6.6e-98 327.9 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|292656562|ref|YP_003536459.1| - 3.4e-30 105.2 0.2 4.9e-28 98.2 0.2 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|292656562|ref|YP_003536459.1| - 1.3e-21 77.0 0.3 3.3e-21 75.7 0.3 1.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain TatC PF00902.18 gi|292656563|ref|YP_003536460.1| - 0.00029 20.7 2.4 0.00082 19.3 2.4 1.8 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) ECF_trnsprt PF12822.7 gi|292656563|ref|YP_003536460.1| - 0.0064 16.6 2.7 0.011 15.9 2.7 1.4 1 0 0 1 1 1 1 ECF transporter, substrate-specific component CnrY PF17524.2 gi|292656563|ref|YP_003536460.1| - 7.6 6.8 10.6 0.93 9.8 0.1 3.2 3 1 1 4 4 4 0 Anti-sigma factor CnrY RVT_3 PF13456.6 gi|292656564|ref|YP_003536461.1| - 0.0064 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|292656564|ref|YP_003536461.1| - 0.016 15.4 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 RNase H BPD_transp_1 PF00528.22 gi|292656565|ref|YP_003536462.1| - 1.5e-39 135.7 13.1 2.4e-39 135.0 13.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|292656566|ref|YP_003536463.1| - 4.2e-23 82.4 0.0 8e-23 81.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292656566|ref|YP_003536463.1| - 3.7e-17 62.6 0.0 6.8e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292656566|ref|YP_003536463.1| - 3.4e-08 33.6 0.3 1.1e-07 32.0 0.0 1.9 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|292656566|ref|YP_003536463.1| - 0.0035 17.6 0.2 0.17 12.1 0.2 2.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|292656567|ref|YP_003536464.1| - 1.7e-30 106.3 0.0 2.2e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|292656567|ref|YP_003536464.1| - 3.6e-10 40.2 0.0 6.7e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|292656567|ref|YP_003536464.1| - 1.4e-05 25.1 0.1 0.022 14.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|292656567|ref|YP_003536464.1| - 0.00076 19.8 0.6 0.0098 16.2 0.6 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|292656567|ref|YP_003536464.1| - 0.0017 17.8 0.0 0.026 13.9 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|292656567|ref|YP_003536464.1| - 0.0087 16.5 1.0 0.016 15.6 1.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|292656567|ref|YP_003536464.1| - 0.025 14.6 0.0 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|292656567|ref|YP_003536464.1| - 0.085 12.4 0.1 15 5.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|292656567|ref|YP_003536464.1| - 0.093 12.4 0.1 13 5.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.16 gi|292656567|ref|YP_003536464.1| - 0.12 11.6 0.2 0.19 11.0 0.2 1.3 1 0 0 1 1 1 0 AIG1 family PRK PF00485.18 gi|292656567|ref|YP_003536464.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|292656567|ref|YP_003536464.1| - 0.26 11.1 0.2 0.5 10.1 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|292656567|ref|YP_003536464.1| - 0.44 9.1 0.2 3.2 6.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain EamA PF00892.20 gi|292656569|ref|YP_003536466.1| - 2e-34 118.7 30.3 2.7e-17 63.2 11.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family Aldo_ket_red PF00248.21 gi|292656571|ref|YP_003536468.1| - 6.5e-77 258.6 0.0 7.7e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF1684 PF07920.11 gi|292656572|ref|YP_003536469.1| - 7e-54 181.9 0.2 9.1e-54 181.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) IncD PF17628.2 gi|292656573|ref|YP_003536470.1| - 0.056 13.2 1.4 0.063 13.1 1.4 1.0 1 0 0 1 1 1 0 Inclusion membrane protein D Pilin_N PF07790.11 gi|292656574|ref|YP_003536471.1| - 5e-22 78.6 4.4 5e-22 78.6 4.4 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal BPD_transp_1 PF00528.22 gi|292656574|ref|YP_003536471.1| - 0.05 13.3 1.2 0.063 13.0 1.2 1.2 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component Pilin_N PF07790.11 gi|292656575|ref|YP_003536472.1| - 1.4e-25 90.0 1.9 1.4e-25 90.0 1.9 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Ribonuc_red_lgC PF02867.15 gi|292656576|ref|YP_003536473.1| - 6.3e-151 503.5 0.0 8e-151 503.1 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|292656576|ref|YP_003536473.1| - 2.6e-22 78.6 0.0 1.1e-21 76.6 0.0 2.2 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain PADR1 PF08063.12 gi|292656576|ref|YP_003536473.1| - 0.0034 17.1 4.3 0.0064 16.3 4.3 1.5 1 0 0 1 1 1 1 PADR1 (NUC008) domain Nab2 PF11517.8 gi|292656576|ref|YP_003536473.1| - 0.11 12.8 0.0 0.48 10.7 0.0 2.1 1 0 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) TraG-D_C PF12696.7 gi|292656576|ref|YP_003536473.1| - 0.14 12.2 0.0 0.5 10.4 0.0 1.9 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG zf-RRN7 PF11781.8 gi|292656576|ref|YP_003536473.1| - 0.58 9.9 5.4 1.3 8.8 5.4 1.6 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 GATase PF00117.28 gi|292656577|ref|YP_003536474.1| - 1.9e-44 151.7 0.0 2.2e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292656577|ref|YP_003536474.1| - 3e-07 30.4 0.0 2.9e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|292656578|ref|YP_003536475.1| - 6.1e-93 311.1 0.0 3.6e-92 308.6 0.0 1.9 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|292656578|ref|YP_003536475.1| - 1.3e-17 64.4 0.0 5.6e-15 55.8 0.0 3.4 3 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|292656579|ref|YP_003536476.1| - 4.4e-36 124.5 0.0 5e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UPF0180 PF03698.13 gi|292656579|ref|YP_003536476.1| - 0.079 13.1 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) His_biosynth PF00977.21 gi|292656579|ref|YP_003536476.1| - 0.16 11.4 3.3 0.11 12.0 0.1 2.2 2 1 1 3 3 3 0 Histidine biosynthesis protein NMO PF03060.15 gi|292656579|ref|YP_003536476.1| - 0.29 10.5 8.0 1.3 8.3 7.7 2.2 1 1 1 2 2 2 0 Nitronate monooxygenase Glycos_transf_3 PF00591.21 gi|292656580|ref|YP_003536477.1| - 1.2e-102 342.8 3.4 1.7e-102 342.3 3.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|292656580|ref|YP_003536477.1| - 3.2e-17 62.1 3.8 5.6e-17 61.3 3.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|292656580|ref|YP_003536477.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) UPF0542 PF15086.6 gi|292656581|ref|YP_003536478.1| - 0.052 13.5 0.0 0.058 13.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 TMEM208_SND2 PF05620.11 gi|292656581|ref|YP_003536478.1| - 0.08 12.7 0.0 0.088 12.6 0.0 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 HisKA_4TM PF16926.5 gi|292656581|ref|YP_003536478.1| - 0.14 11.7 0.1 0.14 11.7 0.1 1.0 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase DUF2852 PF11014.8 gi|292656581|ref|YP_003536478.1| - 0.16 12.1 0.0 0.18 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) DUF2062 PF09835.9 gi|292656582|ref|YP_003536479.1| - 1.5e-18 67.1 5.3 1.7e-18 66.9 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) CBS PF00571.28 gi|292656583|ref|YP_003536480.1| - 1.5e-22 79.8 1.6 8.2e-11 42.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain ACP_syn_III PF08545.10 gi|292656583|ref|YP_003536480.1| - 0.12 12.3 2.9 3.3 7.6 0.5 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MCPsignal PF00015.21 gi|292656584|ref|YP_003536481.1| - 3.2e-44 150.8 48.3 2.4e-41 141.4 23.0 4.3 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|292656584|ref|YP_003536481.1| - 2.3e-13 50.3 20.7 1.5e-08 34.9 0.8 5.4 5 0 0 5 5 4 2 HAMP domain DUF948 PF06103.11 gi|292656584|ref|YP_003536481.1| - 3.7e-06 27.1 34.9 0.061 13.6 2.3 6.6 3 2 2 6 6 6 4 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|292656584|ref|YP_003536481.1| - 0.0012 19.1 23.7 0.16 12.3 0.7 5.4 3 2 1 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|292656584|ref|YP_003536481.1| - 0.0012 18.9 24.0 0.2 11.7 2.0 4.6 2 2 1 4 4 4 2 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|292656584|ref|YP_003536481.1| - 0.0017 18.6 5.3 0.39 11.0 0.0 3.9 3 1 1 4 4 4 1 Uncharacterized conserved protein AAA_13 PF13166.6 gi|292656584|ref|YP_003536481.1| - 0.0029 16.3 21.1 0.062 11.9 7.2 2.7 1 1 2 3 3 3 3 AAA domain IFT57 PF10498.9 gi|292656584|ref|YP_003536481.1| - 0.0095 14.9 9.0 0.19 10.7 1.8 2.6 2 1 0 2 2 2 2 Intra-flagellar transport protein 57 Syntaxin_2 PF14523.6 gi|292656584|ref|YP_003536481.1| - 0.026 14.9 6.7 1.4 9.3 0.4 4.0 1 1 3 4 4 4 0 Syntaxin-like protein SHE3 PF17078.5 gi|292656584|ref|YP_003536481.1| - 0.073 12.8 3.1 5.1 6.7 0.2 2.5 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Spc7 PF08317.11 gi|292656584|ref|YP_003536481.1| - 0.18 10.7 22.0 0.46 9.3 7.5 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein SidC_N PF18219.1 gi|292656584|ref|YP_003536481.1| - 0.27 10.2 1.8 0.32 9.9 0.1 1.8 2 0 0 2 2 2 0 SidC N-terminal domain Baculo_PEP_C PF04513.12 gi|292656584|ref|YP_003536481.1| - 0.28 11.2 20.6 0.77 9.8 1.0 4.4 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus RPW8 PF05659.11 gi|292656584|ref|YP_003536481.1| - 0.43 10.3 2.2 56 3.4 0.0 3.9 3 1 1 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF724 PF05266.14 gi|292656584|ref|YP_003536481.1| - 0.45 10.3 10.2 2.1 8.1 0.5 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF724) Laminin_II PF06009.12 gi|292656584|ref|YP_003536481.1| - 0.55 10.3 29.6 1.5 8.9 1.6 4.9 1 1 2 4 4 4 0 Laminin Domain II HMMR_N PF15905.5 gi|292656584|ref|YP_003536481.1| - 0.66 9.4 12.3 4.2 6.7 7.5 2.7 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal LOH1CR12 PF10158.9 gi|292656584|ref|YP_003536481.1| - 0.7 9.9 10.4 1.6 8.7 0.3 3.7 3 1 1 4 4 3 0 Tumour suppressor protein Seryl_tRNA_N PF02403.22 gi|292656584|ref|YP_003536481.1| - 0.86 9.9 18.0 5 7.4 1.3 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DASH_Dam1 PF08653.10 gi|292656584|ref|YP_003536481.1| - 0.9 9.4 2.7 44 4.0 0.1 4.0 4 0 0 4 4 3 0 DASH complex subunit Dam1 Spectrin PF00435.21 gi|292656584|ref|YP_003536481.1| - 0.91 10.0 16.2 5.7 7.5 0.4 5.1 3 1 3 6 6 6 0 Spectrin repeat Fib_alpha PF08702.10 gi|292656584|ref|YP_003536481.1| - 1.1 9.5 10.0 11 6.2 0.5 3.8 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family DUF4200 PF13863.6 gi|292656584|ref|YP_003536481.1| - 1.1 9.7 8.9 12 6.4 0.1 3.6 2 2 1 3 3 3 0 Domain of unknown function (DUF4200) Syntaxin-6_N PF09177.11 gi|292656584|ref|YP_003536481.1| - 1.2 9.7 22.0 1.5 9.4 0.1 4.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal MAD PF05557.13 gi|292656584|ref|YP_003536481.1| - 1.4 7.2 13.7 0.39 9.0 9.1 1.9 1 1 1 2 2 2 0 Mitotic checkpoint protein UPF0242 PF06785.11 gi|292656584|ref|YP_003536481.1| - 1.5 8.9 11.8 1.1 9.3 2.6 2.9 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Filament PF00038.21 gi|292656584|ref|YP_003536481.1| - 1.7 8.2 19.9 0.34 10.5 5.0 2.9 1 1 1 2 2 2 0 Intermediate filament protein Atg14 PF10186.9 gi|292656584|ref|YP_003536481.1| - 2.3 7.2 7.3 9.1 5.3 0.6 2.3 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Prominin PF05478.11 gi|292656584|ref|YP_003536481.1| - 3 5.7 10.3 7.8 4.3 9.3 2.0 1 1 0 1 1 1 0 Prominin Mod_r PF07200.13 gi|292656584|ref|YP_003536481.1| - 3.2 7.8 10.4 6.1 6.9 1.5 3.0 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF16 PF01519.16 gi|292656584|ref|YP_003536481.1| - 3.3 8.3 12.2 22 5.6 0.1 3.6 1 1 2 3 3 3 0 Protein of unknown function DUF16 ISG65-75 PF11727.8 gi|292656584|ref|YP_003536481.1| - 3.6 6.8 20.5 1.9 7.7 7.8 2.7 1 1 0 2 2 2 0 Invariant surface glycoprotein GAS PF13851.6 gi|292656584|ref|YP_003536481.1| - 5.5 6.3 7.7 12 5.1 3.5 2.7 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding ING PF12998.7 gi|292656584|ref|YP_003536481.1| - 5.6 7.6 6.0 37 5.0 2.4 3.3 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF2203 PF09969.9 gi|292656584|ref|YP_003536481.1| - 5.9 7.6 23.0 25 5.6 1.7 4.9 1 1 4 5 5 4 0 Uncharacterized conserved protein (DUF2203) Not3 PF04065.15 gi|292656584|ref|YP_003536481.1| - 6.6 6.1 13.0 2 7.8 3.3 3.0 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component TMF_TATA_bd PF12325.8 gi|292656584|ref|YP_003536481.1| - 6.7 7.0 18.5 0.14 12.4 2.0 4.1 2 2 1 3 3 3 0 TATA element modulatory factor 1 TATA binding TRPM_tetra PF16519.5 gi|292656584|ref|YP_003536481.1| - 7.6 6.7 12.2 18 5.6 0.1 4.8 6 0 0 6 6 5 0 Tetramerisation domain of TRPM COG2 PF06148.11 gi|292656584|ref|YP_003536481.1| - 7.7 6.6 22.0 3.1 7.9 2.3 4.8 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Prefoldin_2 PF01920.20 gi|292656584|ref|YP_003536481.1| - 7.9 6.5 7.7 60 3.6 0.2 3.5 2 1 1 3 3 3 0 Prefoldin subunit Vps51 PF08700.11 gi|292656584|ref|YP_003536481.1| - 8.3 6.6 7.2 10 6.3 0.1 4.3 5 2 1 6 6 4 0 Vps51/Vps67 ZapB PF06005.12 gi|292656584|ref|YP_003536481.1| - 8.9 6.8 9.8 40 4.8 2.6 4.2 3 2 1 4 4 4 0 Cell division protein ZapB Rubredoxin_2 PF18073.1 gi|292656585|ref|YP_003536482.1| - 0.6 9.9 4.3 0.93 9.3 4.3 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain CoA_binding PF02629.19 gi|292656586|ref|YP_003536483.1| - 1.6e-26 92.8 1.5 2.6e-26 92.1 0.5 1.9 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|292656586|ref|YP_003536483.1| - 3.8e-13 49.5 0.6 6.9e-13 48.7 0.6 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|292656586|ref|YP_003536483.1| - 7.2e-10 38.8 0.0 1.1e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|292656586|ref|YP_003536483.1| - 2.4e-06 28.0 0.0 7.5e-05 23.2 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|292656587|ref|YP_003536484.1| - 8.6e-68 227.9 0.4 1.4e-67 227.2 0.4 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|292656587|ref|YP_003536484.1| - 1.5e-18 67.1 6.5 2.1e-17 63.4 4.4 2.8 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|292656587|ref|YP_003536484.1| - 1.4e-13 50.9 0.6 4.2e-13 49.4 0.6 1.8 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|292656587|ref|YP_003536484.1| - 1.7e-12 47.3 2.7 7.7e-10 38.6 0.8 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|292656587|ref|YP_003536484.1| - 3.7e-08 33.1 0.1 6.5e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|292656587|ref|YP_003536484.1| - 1.6e-07 31.3 1.6 2.8e-07 30.5 0.3 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|292656587|ref|YP_003536484.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain ADH_zinc_N_2 PF13602.6 gi|292656589|ref|YP_003536486.1| - 3.3e-20 73.5 0.4 3.3e-20 73.5 0.4 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|292656589|ref|YP_003536486.1| - 5.5e-17 62.0 0.4 5.5e-17 62.0 0.4 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|292656589|ref|YP_003536486.1| - 6.2e-11 42.1 0.3 6.2e-11 42.1 0.3 2.1 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|292656589|ref|YP_003536486.1| - 0.00071 19.5 0.1 0.0017 18.2 0.1 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase adh_short PF00106.25 gi|292656589|ref|YP_003536486.1| - 0.0076 15.7 1.4 0.015 14.7 1.4 1.6 1 1 0 1 1 1 1 short chain dehydrogenase YAcAr PF10686.9 gi|292656589|ref|YP_003536486.1| - 0.035 14.1 2.6 0.088 12.8 2.6 1.7 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family adh_short_C2 PF13561.6 gi|292656590|ref|YP_003536487.1| - 1.5e-42 145.8 0.1 2.6e-42 145.0 0.1 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|292656590|ref|YP_003536487.1| - 5.6e-38 130.4 0.0 6.7e-38 130.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|292656590|ref|YP_003536487.1| - 4.5e-07 29.6 0.1 6.9e-07 29.0 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|292656590|ref|YP_003536487.1| - 5e-05 23.3 0.2 0.00012 22.0 0.1 1.6 2 0 0 2 2 2 1 NAD(P)H-binding KR PF08659.10 gi|292656590|ref|YP_003536487.1| - 8.4e-05 22.6 0.1 0.00025 21.0 0.1 1.7 1 1 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|292656590|ref|YP_003536487.1| - 0.00011 21.3 0.1 0.00017 20.7 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family CdiI_4 PF18624.1 gi|292656590|ref|YP_003536487.1| - 0.00036 21.0 0.9 0.0006 20.3 0.9 1.3 1 0 0 1 1 1 1 CDI immunity protein NmrA PF05368.13 gi|292656590|ref|YP_003536487.1| - 0.00055 19.6 0.2 0.0011 18.5 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|292656590|ref|YP_003536487.1| - 0.0069 15.5 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|292656590|ref|YP_003536487.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase SNF PF00209.18 gi|292656591|ref|YP_003536488.1| - 1.5e-51 175.7 33.2 2.1e-30 105.9 15.8 2.0 1 1 0 2 2 2 2 Sodium:neurotransmitter symporter family SNF PF00209.18 gi|292656592|ref|YP_003536489.1| - 3e-46 158.2 23.8 2.3e-25 89.3 3.7 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.22 gi|292656593|ref|YP_003536490.1| - 4.6e-201 668.7 0.0 5.2e-201 668.6 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|292656593|ref|YP_003536490.1| - 0.016 14.7 0.1 0.069 12.6 0.0 1.9 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) CbiM PF01891.16 gi|292656595|ref|YP_003536492.1| - 0.11 12.3 5.2 0.44 10.4 0.2 2.1 1 1 1 2 2 2 0 Cobalt uptake substrate-specific transmembrane region MmgE_PrpD PF03972.14 gi|292656595|ref|YP_003536492.1| - 0.18 10.3 3.2 0.21 10.1 3.2 1.0 1 0 0 1 1 1 0 MmgE/PrpD family DUF2374 PF09574.10 gi|292656595|ref|YP_003536492.1| - 8.4 6.3 7.7 0.76 9.7 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) GDPD PF03009.17 gi|292656596|ref|YP_003536493.1| - 9.8e-33 114.0 0.0 3.3e-30 105.7 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Ribosomal_S17e PF00833.18 gi|292656597|ref|YP_003536494.1| - 2.5e-13 50.0 0.1 2.7e-13 49.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.6 gi|292656597|ref|YP_003536494.1| - 0.078 13.4 0.0 0.08 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DUF447 PF04289.12 gi|292656598|ref|YP_003536495.1| - 3.1e-39 134.6 0.0 3.9e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Phage_P2_GpE PF06528.12 gi|292656598|ref|YP_003536495.1| - 0.032 13.8 0.6 0.059 12.9 0.6 1.4 1 0 0 1 1 1 0 Phage P2 GpE CitG PF01874.16 gi|292656599|ref|YP_003536496.1| - 2e-62 211.4 8.8 2.3e-62 211.2 8.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.17 gi|292656600|ref|YP_003536497.1| - 1.2e-10 41.0 0.3 4.8e-10 39.0 0.3 1.7 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Radical_SAM PF04055.21 gi|292656600|ref|YP_003536497.1| - 0.00069 20.0 0.0 1.6 9.1 0.0 2.5 1 1 2 3 3 3 2 Radical SAM superfamily His_biosynth PF00977.21 gi|292656600|ref|YP_003536497.1| - 0.004 16.6 0.0 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|292656600|ref|YP_003536497.1| - 0.089 11.8 1.1 0.11 11.5 1.1 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.19 gi|292656600|ref|YP_003536497.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF3237 PF11578.8 gi|292656600|ref|YP_003536497.1| - 0.16 11.8 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) UPF0052 PF01933.18 gi|292656601|ref|YP_003536498.1| - 5.3e-46 157.2 0.0 6.5e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 CDPS PF16715.5 gi|292656601|ref|YP_003536498.1| - 0.14 11.8 0.0 0.25 10.9 0.0 1.5 1 1 0 1 1 1 0 Cyclodipeptide synthase DUF998 PF06197.13 gi|292656602|ref|YP_003536499.1| - 0.0036 16.9 12.9 0.0036 16.9 12.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ANAPC5 PF12862.7 gi|292656602|ref|YP_003536499.1| - 0.22 11.6 0.0 0.28 11.3 0.0 1.1 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 SLATT_fungal PF18142.1 gi|292656602|ref|YP_003536499.1| - 6.2 6.8 8.0 8.1 6.5 8.0 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain HD PF01966.22 gi|292656603|ref|YP_003536500.1| - 2e-10 40.9 3.2 5e-10 39.7 3.2 1.8 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|292656604|ref|YP_003536501.1| - 2.3e-11 44.0 2.7 6.2e-11 42.6 2.7 1.8 1 0 0 1 1 1 1 HD domain Amidohydro_1 PF01979.20 gi|292656605|ref|YP_003536502.1| - 2.1e-28 99.6 0.6 8.2e-26 91.1 0.6 2.2 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|292656605|ref|YP_003536502.1| - 6.2e-08 32.3 0.0 9.1e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase PG_isomerase_N PF18353.1 gi|292656605|ref|YP_003536502.1| - 0.15 12.5 2.5 0.65 10.4 0.1 2.6 1 1 0 2 2 2 0 Phosphoglucose isomerase N-terminal domain Usp PF00582.26 gi|292656606|ref|YP_003536503.1| - 1.7e-38 132.3 2.0 1.7e-38 132.3 2.0 1.7 2 0 0 2 2 2 1 Universal stress protein family BPL_LplA_LipB PF03099.19 gi|292656607|ref|YP_003536504.1| - 5.2e-13 49.0 0.0 7.7e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|292656607|ref|YP_003536504.1| - 9.8e-11 41.4 0.0 1.5e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|292656607|ref|YP_003536504.1| - 1.1e-07 31.6 0.1 2.1e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|292656607|ref|YP_003536504.1| - 5.8e-07 29.5 0.0 1.5e-06 28.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|292656607|ref|YP_003536504.1| - 4.9e-06 26.0 0.0 9.5e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292656607|ref|YP_003536504.1| - 6.3e-05 22.8 0.0 0.00023 21.0 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292656607|ref|YP_003536504.1| - 9.9e-05 22.1 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|292656607|ref|YP_003536504.1| - 0.0021 17.9 0.2 0.008 16.0 0.2 2.1 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DprA_WH PF17782.1 gi|292656607|ref|YP_003536504.1| - 0.037 14.2 0.1 0.11 12.6 0.1 1.8 1 0 0 1 1 1 0 DprA winged helix domain Fe_dep_repress PF01325.19 gi|292656607|ref|YP_003536504.1| - 0.041 14.1 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|292656607|ref|YP_003536504.1| - 0.045 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|292656607|ref|YP_003536504.1| - 0.062 13.3 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family BPL_LplA_LipB_2 PF16917.5 gi|292656607|ref|YP_003536504.1| - 0.072 12.6 0.8 0.2 11.2 0.2 2.1 2 0 0 2 2 2 0 Biotin/lipoate A/B protein ligase family HTH_10 PF04967.12 gi|292656607|ref|YP_003536504.1| - 0.099 12.5 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|292656607|ref|YP_003536504.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|292656607|ref|YP_003536504.1| - 0.43 10.6 2.3 5.7 7.0 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn helix CPSase_L_D2 PF02786.17 gi|292656608|ref|YP_003536505.1| - 5.2e-75 251.6 0.1 8e-75 250.9 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|292656608|ref|YP_003536505.1| - 1.9e-45 153.9 0.9 8.7e-45 151.8 0.3 2.4 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|292656608|ref|YP_003536505.1| - 1.2e-37 128.3 0.0 2.6e-37 127.2 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|292656608|ref|YP_003536505.1| - 8.7e-17 60.7 5.5 1.8e-16 59.7 4.1 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 gi|292656608|ref|YP_003536505.1| - 1.1e-10 41.4 0.0 2.5e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|292656608|ref|YP_003536505.1| - 3.5e-10 39.7 0.1 3.6e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 gi|292656608|ref|YP_003536505.1| - 9.1e-09 35.0 1.7 0.0015 18.3 0.3 3.0 2 1 1 3 3 2 2 Biotin-lipoyl like ATP-grasp_3 PF02655.14 gi|292656608|ref|YP_003536505.1| - 0.00076 19.6 0.0 0.002 18.2 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain LAL_C2 PF18603.1 gi|292656608|ref|YP_003536505.1| - 0.0012 19.0 1.0 0.063 13.4 0.1 3.4 2 0 0 2 2 2 1 L-amino acid ligase C-terminal domain 2 GARS_A PF01071.19 gi|292656608|ref|YP_003536505.1| - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|292656608|ref|YP_003536505.1| - 0.0032 16.9 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain HlyD_D23 PF16576.5 gi|292656608|ref|YP_003536505.1| - 0.011 15.0 0.5 1.5 8.0 0.1 2.5 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|292656608|ref|YP_003536505.1| - 0.011 16.4 0.9 3.9 8.2 0.1 3.2 3 0 0 3 3 2 0 HlyD family secretion protein GCV_H PF01597.19 gi|292656608|ref|YP_003536505.1| - 0.061 13.2 0.5 0.17 11.8 0.5 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein ATPgrasp_ST PF14397.6 gi|292656608|ref|YP_003536505.1| - 0.069 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Peptidase_M23 PF01551.22 gi|292656608|ref|YP_003536505.1| - 0.075 13.3 0.5 2.1 8.6 0.1 2.8 3 0 0 3 3 3 0 Peptidase family M23 ATPgrasp_Ter PF15632.6 gi|292656608|ref|YP_003536505.1| - 0.078 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_2 PF08442.10 gi|292656608|ref|YP_003536505.1| - 0.12 11.9 0.8 0.27 10.7 0.1 1.8 2 0 0 2 2 2 0 ATP-grasp domain DUF4019 PF13211.6 gi|292656608|ref|YP_003536505.1| - 0.14 12.6 0.1 0.54 10.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4019) Semialdhyde_dh PF01118.24 gi|292656609|ref|YP_003536506.1| - 2.2e-34 118.5 0.0 4.1e-34 117.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|292656609|ref|YP_003536506.1| - 1.2e-29 103.7 0.0 1.7e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|292656609|ref|YP_003536506.1| - 0.00033 20.8 0.0 0.0006 19.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|292656609|ref|YP_003536506.1| - 0.00086 20.0 0.0 0.0017 19.1 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.22 gi|292656609|ref|YP_003536506.1| - 0.011 16.6 0.0 0.018 15.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|292656609|ref|YP_003536506.1| - 0.018 14.7 0.0 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HPP PF04982.13 gi|292656610|ref|YP_003536507.1| - 0.00015 21.9 1.9 0.00017 21.7 1.9 1.1 1 0 0 1 1 1 1 HPP family DZR PF12773.7 gi|292656611|ref|YP_003536508.1| - 0.006 16.6 10.5 0.86 9.7 5.3 3.0 1 1 1 2 2 2 2 Double zinc ribbon zf-CHY PF05495.12 gi|292656611|ref|YP_003536508.1| - 0.025 15.0 2.2 0.064 13.8 2.2 1.7 1 1 0 1 1 1 0 CHY zinc finger DUF1272 PF06906.11 gi|292656611|ref|YP_003536508.1| - 0.032 14.3 8.8 0.36 11.0 1.9 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) zf-C4_Topoisom PF01396.19 gi|292656611|ref|YP_003536508.1| - 0.093 12.5 0.0 0.093 12.5 0.0 2.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-piccolo PF05715.13 gi|292656611|ref|YP_003536508.1| - 0.11 12.7 4.7 0.47 10.6 0.2 2.7 3 0 0 3 3 3 0 Piccolo Zn-finger C1_1 PF00130.22 gi|292656611|ref|YP_003536508.1| - 0.68 9.9 5.8 4.1 7.4 0.0 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|292656611|ref|YP_003536508.1| - 1.6 8.3 11.8 4.1 7.0 0.6 3.7 1 1 3 4 4 4 0 TFIIB zinc-binding PNPase_C PF12111.8 gi|292656612|ref|YP_003536509.1| - 0.13 11.7 4.2 2.1 7.8 1.0 2.3 2 0 0 2 2 2 0 Polyribonucleotide phosphorylase C terminal TruB_C_2 PF16198.5 gi|292656614|ref|YP_003536511.1| - 2.1e-23 82.3 1.6 2.5e-23 82.0 0.1 1.9 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|292656614|ref|YP_003536511.1| - 1.2e-21 77.6 0.1 2.1e-12 47.7 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.20 gi|292656614|ref|YP_003536511.1| - 9.8e-10 38.3 0.5 1.8e-09 37.4 0.5 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|292656614|ref|YP_003536511.1| - 1.9e-08 34.2 0.1 4.8e-08 33.0 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.6 gi|292656615|ref|YP_003536512.1| - 3.1e-18 66.5 1.7 4.3e-16 59.5 1.7 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|292656615|ref|YP_003536512.1| - 2.8e-16 60.3 0.0 4e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|292656615|ref|YP_003536512.1| - 7.8e-14 52.3 0.0 1.9e-13 51.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|292656615|ref|YP_003536512.1| - 1.7e-09 37.7 0.7 3e-05 23.8 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|292656615|ref|YP_003536512.1| - 2.6e-08 34.1 0.0 8e-08 32.5 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|292656615|ref|YP_003536512.1| - 5.2e-07 29.9 0.1 1.9e-05 24.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|292656615|ref|YP_003536512.1| - 6.3e-05 23.1 1.1 0.00079 19.6 1.1 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.29 gi|292656615|ref|YP_003536512.1| - 0.00034 21.0 0.0 0.00055 20.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|292656615|ref|YP_003536512.1| - 0.00041 20.6 0.1 0.00078 19.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|292656615|ref|YP_003536512.1| - 0.0014 18.9 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|292656615|ref|YP_003536512.1| - 0.0023 17.6 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_30 PF13604.6 gi|292656615|ref|YP_003536512.1| - 0.0027 17.5 0.8 0.064 13.0 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292656615|ref|YP_003536512.1| - 0.0037 17.7 0.2 0.0053 17.2 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|292656615|ref|YP_003536512.1| - 0.0053 16.2 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|292656615|ref|YP_003536512.1| - 0.018 14.9 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_5 PF07728.14 gi|292656615|ref|YP_003536512.1| - 0.025 14.6 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|292656615|ref|YP_003536512.1| - 0.049 14.0 0.0 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CPT PF07931.12 gi|292656615|ref|YP_003536512.1| - 0.065 13.1 0.2 5 6.9 0.0 2.2 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 gi|292656615|ref|YP_003536512.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|292656615|ref|YP_003536512.1| - 0.095 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|292656615|ref|YP_003536512.1| - 0.096 13.2 0.0 0.12 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|292656615|ref|YP_003536512.1| - 0.1 11.6 0.1 0.15 11.1 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|292656615|ref|YP_003536512.1| - 0.14 12.3 0.1 0.28 11.2 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 gi|292656615|ref|YP_003536512.1| - 0.14 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Hydin_ADK PF17213.3 gi|292656615|ref|YP_003536512.1| - 0.15 12.3 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Rad17 PF03215.15 gi|292656615|ref|YP_003536512.1| - 0.18 11.7 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain EMC3_TMCO1 PF01956.16 gi|292656616|ref|YP_003536513.1| - 8.8e-50 168.8 0.9 1.1e-49 168.4 0.9 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|292656616|ref|YP_003536513.1| - 2.6e-06 27.4 0.2 4.4e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4890 PF16231.5 gi|292656616|ref|YP_003536513.1| - 0.0091 16.5 4.1 0.014 15.8 4.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4890) DUF4199 PF13858.6 gi|292656616|ref|YP_003536513.1| - 0.034 14.5 0.7 0.034 14.5 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF530 PF04409.12 gi|292656616|ref|YP_003536513.1| - 0.055 11.8 0.6 0.074 11.4 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) HemX PF04375.14 gi|292656616|ref|YP_003536513.1| - 0.11 11.7 0.5 0.16 11.2 0.5 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase ADK PF00406.22 gi|292656617|ref|YP_003536514.1| - 6.5e-45 152.9 0.0 7.8e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|292656617|ref|YP_003536514.1| - 4.1e-23 82.3 0.3 1.5e-22 80.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|292656617|ref|YP_003536514.1| - 1e-16 60.6 3.0 1.6e-16 59.9 3.0 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|292656617|ref|YP_003536514.1| - 1e-08 35.8 0.0 2e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|292656617|ref|YP_003536514.1| - 1.2e-05 25.5 0.0 2.7e-05 24.3 0.0 1.6 2 0 0 2 2 1 1 AAA domain zf-IS66 PF13005.7 gi|292656617|ref|YP_003536514.1| - 0.0052 17.1 2.1 0.12 12.8 0.5 2.5 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 dNK PF01712.19 gi|292656617|ref|YP_003536514.1| - 0.0061 16.4 0.0 3.8 7.3 0.0 2.8 3 0 0 3 3 3 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|292656617|ref|YP_003536514.1| - 0.0065 16.7 0.7 0.0091 16.3 0.1 1.6 2 1 0 2 2 1 1 AAA domain Zn-ribbon_8 PF09723.10 gi|292656617|ref|YP_003536514.1| - 0.0082 16.2 2.3 0.0082 16.2 2.3 1.9 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|292656617|ref|YP_003536514.1| - 0.013 15.5 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thymidylate_kin PF02223.17 gi|292656617|ref|YP_003536514.1| - 0.017 14.8 1.2 21 4.7 0.0 3.1 3 0 0 3 3 3 0 Thymidylate kinase zf-C4_Topoisom PF01396.19 gi|292656617|ref|YP_003536514.1| - 0.017 14.9 0.2 0.61 9.9 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger SKI PF01202.22 gi|292656617|ref|YP_003536514.1| - 0.018 15.2 0.2 0.037 14.1 0.2 1.8 1 1 0 1 1 1 0 Shikimate kinase PAS_7 PF12860.7 gi|292656617|ref|YP_003536514.1| - 0.032 14.4 0.0 0.088 13.0 0.0 1.7 2 0 0 2 2 2 0 PAS fold DZR PF12773.7 gi|292656617|ref|YP_003536514.1| - 0.032 14.3 0.3 0.054 13.5 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon RuvB_N PF05496.12 gi|292656617|ref|YP_003536514.1| - 0.034 13.9 0.1 0.071 12.9 0.1 1.6 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain SRP54 PF00448.22 gi|292656617|ref|YP_003536514.1| - 0.046 13.3 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Ploopntkinase3 PF18751.1 gi|292656617|ref|YP_003536514.1| - 0.069 13.1 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 TF_Zn_Ribbon PF08271.12 gi|292656617|ref|YP_003536514.1| - 0.12 11.9 4.5 0.27 10.8 4.5 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1272 PF06906.11 gi|292656617|ref|YP_003536514.1| - 0.14 12.3 1.7 0.92 9.6 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) GFA PF04828.14 gi|292656617|ref|YP_003536514.1| - 0.14 12.5 0.4 4.4 7.7 0.4 2.3 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme AAA_22 PF13401.6 gi|292656617|ref|YP_003536514.1| - 0.16 12.2 0.1 1.3 9.3 0.1 2.1 2 1 0 2 2 2 0 AAA domain DUF1451 PF07295.11 gi|292656617|ref|YP_003536514.1| - 0.24 11.4 2.5 0.33 11.0 1.5 1.7 1 1 0 1 1 1 0 Zinc-ribbon containing domain zf-RRN7 PF11781.8 gi|292656617|ref|YP_003536514.1| - 0.58 9.9 4.6 8.2 6.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|292656617|ref|YP_003536514.1| - 1.5 8.8 5.4 13 5.8 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal Cons_hypoth698 PF03601.14 gi|292656618|ref|YP_003536515.1| - 3e-55 187.3 20.9 3.7e-55 186.9 20.9 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 Usp PF00582.26 gi|292656620|ref|YP_003536517.1| - 1.3e-10 42.0 0.6 1.6e-10 41.7 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF3235 PF11574.8 gi|292656620|ref|YP_003536517.1| - 0.046 14.6 0.8 0.09 13.6 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3235) AA_permease_2 PF13520.6 gi|292656621|ref|YP_003536518.1| - 9.6e-45 153.2 43.8 1.3e-44 152.8 43.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|292656621|ref|YP_003536518.1| - 8e-37 126.9 38.4 1.2e-36 126.4 38.4 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|292656621|ref|YP_003536518.1| - 3.4e-20 73.0 10.8 2.5e-11 44.3 0.4 3.3 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|292656621|ref|YP_003536518.1| - 2.5e-05 23.3 14.3 2.5e-05 23.3 14.3 2.0 2 0 0 2 2 2 1 Spore germination protein Pterin_bind PF00809.22 gi|292656621|ref|YP_003536518.1| - 0.077 12.7 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 Pterin binding enzyme Trp_Tyr_perm PF03222.13 gi|292656621|ref|YP_003536518.1| - 0.2 10.7 25.3 0.11 11.6 22.9 1.7 2 0 0 2 2 2 0 Tryptophan/tyrosine permease family AA_permease_C PF13906.6 gi|292656621|ref|YP_003536518.1| - 0.25 11.4 8.6 0.09 12.9 4.7 2.4 2 0 0 2 2 2 0 C-terminus of AA_permease DUF3042 PF11240.8 gi|292656621|ref|YP_003536518.1| - 2 8.5 0.0 2 8.5 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) Abhydrolase_1 PF00561.20 gi|292656622|ref|YP_003536519.1| - 3.6e-31 108.7 0.5 1.4e-29 103.6 0.5 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|292656622|ref|YP_003536519.1| - 1.6e-21 77.9 20.1 2.1e-21 77.6 20.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|292656622|ref|YP_003536519.1| - 1.3e-17 63.9 0.4 1.7e-16 60.2 0.4 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|292656622|ref|YP_003536519.1| - 0.0082 15.8 0.0 0.017 14.7 0.0 1.6 1 1 0 1 1 1 1 Putative esterase Ndr PF03096.14 gi|292656622|ref|YP_003536519.1| - 0.049 12.3 0.0 0.091 11.4 0.0 1.3 1 0 0 1 1 1 0 Ndr family AIRS_C PF02769.22 gi|292656623|ref|YP_003536520.1| - 2.7e-21 76.3 1.5 4e-21 75.8 1.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|292656623|ref|YP_003536520.1| - 3e-09 37.4 0.3 3e-09 37.4 0.3 2.3 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain Aminotran_5 PF00266.19 gi|292656624|ref|YP_003536521.1| - 3.5e-23 82.2 0.0 4.5e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|292656624|ref|YP_003536521.1| - 0.002 16.8 0.0 0.0027 16.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|292656624|ref|YP_003536521.1| - 0.0064 15.7 0.0 0.0097 15.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II adh_short PF00106.25 gi|292656625|ref|YP_003536522.1| - 1.4e-38 132.3 0.0 1.8e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292656625|ref|YP_003536522.1| - 3.1e-34 118.6 0.0 3.8e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|292656625|ref|YP_003536522.1| - 8.1e-07 28.7 0.0 9.7e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|292656625|ref|YP_003536522.1| - 2e-05 24.5 0.1 2.4e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|292656625|ref|YP_003536522.1| - 0.00075 19.4 0.0 0.0034 17.3 0.0 1.8 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 gi|292656625|ref|YP_003536522.1| - 0.061 12.4 0.1 0.074 12.1 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain DFP PF04127.15 gi|292656625|ref|YP_003536522.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Prok-JAB PF14464.6 gi|292656626|ref|YP_003536523.1| - 2.1e-17 63.0 0.7 2.6e-17 62.7 0.7 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|292656626|ref|YP_003536523.1| - 3.9e-07 30.1 0.0 5.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease NUDIX PF00293.28 gi|292656627|ref|YP_003536524.1| - 3.8e-13 49.6 1.7 4.6e-13 49.3 1.7 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|292656627|ref|YP_003536524.1| - 0.005 16.8 0.1 0.0082 16.1 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain Sigma70_r3 PF04539.16 gi|292656627|ref|YP_003536524.1| - 0.095 12.8 2.5 0.84 9.8 0.3 2.7 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_AsnC-type PF13404.6 gi|292656628|ref|YP_003536525.1| - 5.3e-18 64.6 1.6 9.1e-18 63.8 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292656628|ref|YP_003536525.1| - 2.5e-17 62.2 0.3 4.2e-17 61.4 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|292656628|ref|YP_003536525.1| - 3.6e-10 39.6 1.2 3.6e-10 39.6 1.2 1.6 2 0 0 2 2 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|292656628|ref|YP_003536525.1| - 3.4e-06 26.7 0.0 6.6e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292656628|ref|YP_003536525.1| - 4.4e-06 26.7 0.1 8.2e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292656628|ref|YP_003536525.1| - 5.3e-05 23.0 0.5 9e-05 22.3 0.2 1.6 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|292656628|ref|YP_003536525.1| - 8.2e-05 22.5 0.1 0.00036 20.4 0.0 1.9 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|292656628|ref|YP_003536525.1| - 0.00051 19.7 0.1 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|292656628|ref|YP_003536525.1| - 0.00052 19.7 0.1 0.00089 19.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|292656628|ref|YP_003536525.1| - 0.0012 18.8 0.2 0.0032 17.5 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix NapD PF03927.13 gi|292656628|ref|YP_003536525.1| - 0.002 18.1 0.9 0.0047 17.0 0.8 1.7 2 0 0 2 2 2 1 NapD protein GntR PF00392.21 gi|292656628|ref|YP_003536525.1| - 0.0021 17.7 0.3 0.0034 17.0 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|292656628|ref|YP_003536525.1| - 0.0032 17.2 0.3 0.007 16.1 0.3 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|292656628|ref|YP_003536525.1| - 0.0034 16.8 0.1 0.0073 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 PaaX PF07848.12 gi|292656628|ref|YP_003536525.1| - 0.0039 17.4 0.2 0.0077 16.4 0.2 1.5 1 1 0 1 1 1 1 PaaX-like protein HTH_5 PF01022.20 gi|292656628|ref|YP_003536525.1| - 0.0045 16.8 0.0 0.0099 15.7 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292656628|ref|YP_003536525.1| - 0.0058 16.5 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|292656628|ref|YP_003536525.1| - 0.0087 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292656628|ref|YP_003536525.1| - 0.014 15.3 0.2 0.035 14.1 0.3 1.6 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|292656628|ref|YP_003536525.1| - 0.016 14.7 0.3 0.029 13.9 0.3 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HrcA_DNA-bdg PF03444.15 gi|292656628|ref|YP_003536525.1| - 0.018 14.7 0.1 0.051 13.2 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.19 gi|292656628|ref|YP_003536525.1| - 0.019 14.5 0.1 0.044 13.3 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|292656628|ref|YP_003536525.1| - 0.024 14.5 0.1 0.086 12.7 0.1 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|292656628|ref|YP_003536525.1| - 0.042 14.4 0.5 0.094 13.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain GYD PF08734.11 gi|292656628|ref|YP_003536525.1| - 0.052 13.5 0.6 0.16 12.0 0.2 1.9 2 1 0 2 2 2 0 GYD domain HTH_38 PF13936.6 gi|292656628|ref|YP_003536525.1| - 0.074 12.8 0.4 0.12 12.1 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|292656628|ref|YP_003536525.1| - 0.098 12.5 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_40 PF14493.6 gi|292656628|ref|YP_003536525.1| - 0.1 13.1 0.1 0.16 12.4 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2554 PF10829.8 gi|292656628|ref|YP_003536525.1| - 0.1 13.0 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2554) Stk19 PF10494.9 gi|292656628|ref|YP_003536525.1| - 0.11 12.2 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 DUF746 PF05344.11 gi|292656628|ref|YP_003536525.1| - 0.15 11.9 0.1 1.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MIase PF02426.16 gi|292656628|ref|YP_003536525.1| - 0.18 12.0 0.5 2.5 8.3 0.2 2.3 1 1 1 2 2 2 0 Muconolactone delta-isomerase CPSase_sm_chain PF00988.22 gi|292656629|ref|YP_003536526.1| - 1.1e-36 125.4 0.1 2.8e-35 120.9 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|292656629|ref|YP_003536526.1| - 6.3e-35 120.7 0.0 8.7e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292656629|ref|YP_003536526.1| - 1.4e-07 31.5 0.3 3.9e-05 23.5 0.3 2.7 1 1 0 1 1 1 1 Peptidase C26 PAS_4 PF08448.10 gi|292656630|ref|YP_003536527.1| - 1.9e-05 24.9 0.2 5.1e-05 23.5 0.2 1.8 1 0 0 1 1 1 1 PAS fold ACC_epsilon PF13822.6 gi|292656630|ref|YP_003536527.1| - 0.44 11.3 9.2 3.1 8.6 0.4 3.0 2 0 0 2 2 2 0 Acyl-CoA carboxylase epsilon subunit Acetyltransf_1 PF00583.25 gi|292656631|ref|YP_003536528.1| - 3.6e-09 36.9 0.0 7.3e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|292656631|ref|YP_003536528.1| - 1.2e-06 29.3 1.6 1.3e-06 29.2 0.1 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292656631|ref|YP_003536528.1| - 0.0024 17.9 0.0 0.0052 16.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|292656631|ref|YP_003536528.1| - 0.0024 17.9 0.0 0.08 13.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656631|ref|YP_003536528.1| - 0.0091 16.4 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656631|ref|YP_003536528.1| - 0.061 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656631|ref|YP_003536528.1| - 0.078 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Asparaginase PF00710.20 gi|292656632|ref|YP_003536529.1| - 3.4e-57 193.1 1.7 6.7e-57 192.1 1.4 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|292656632|ref|YP_003536529.1| - 2e-24 86.0 1.3 6.8e-24 84.3 0.0 2.3 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|292656632|ref|YP_003536529.1| - 1e-15 56.8 0.0 1.8e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain PLDc_N PF13396.6 gi|292656633|ref|YP_003536530.1| - 5.6e-08 32.6 6.7 5.6e-08 32.6 6.7 2.1 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal BCD PF15461.6 gi|292656633|ref|YP_003536530.1| - 0.0034 16.9 4.5 0.0037 16.8 4.5 1.0 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase Tad PF13400.6 gi|292656633|ref|YP_003536530.1| - 0.092 13.1 0.4 0.092 13.1 0.4 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like CcmD PF04995.14 gi|292656633|ref|YP_003536530.1| - 0.18 11.9 6.7 1.7 8.8 0.1 2.5 2 1 1 3 3 3 0 Heme exporter protein D (CcmD) Tmemb_55A PF09788.9 gi|292656633|ref|YP_003536530.1| - 0.31 10.1 0.3 0.33 10.0 0.3 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A FSAP_sig_propep PF03032.15 gi|292656633|ref|YP_003536530.1| - 0.63 10.1 0.2 0.63 10.1 0.2 1.8 2 0 0 2 2 2 0 Frog skin active peptide family signal and propeptide LptF_LptG PF03739.14 gi|292656633|ref|YP_003536530.1| - 0.72 8.6 5.6 0.82 8.4 5.6 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Phage_holin_3_6 PF07332.11 gi|292656633|ref|YP_003536530.1| - 0.91 9.6 9.7 1.5 8.9 9.7 1.4 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|292656633|ref|YP_003536530.1| - 2.3 6.9 5.6 2.5 6.8 5.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|292656633|ref|YP_003536530.1| - 4.8 7.1 7.2 12 5.9 2.3 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4131 PF13567.6 gi|292656633|ref|YP_003536530.1| - 5.7 6.6 9.7 37 3.9 9.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) FixQ PF05545.11 gi|292656633|ref|YP_003536530.1| - 6 6.9 15.3 0.16 11.9 3.5 2.2 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ HTH_5 PF01022.20 gi|292656635|ref|YP_003536532.1| - 5.2e-23 80.6 0.5 4.5e-16 58.4 0.1 3.2 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|292656635|ref|YP_003536532.1| - 2.8e-17 62.5 1.3 3.8e-13 49.3 0.1 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|292656635|ref|YP_003536532.1| - 4.5e-15 55.3 1.7 5.5e-09 35.8 0.1 3.4 4 0 0 4 4 3 2 MarR family TrmB PF01978.19 gi|292656635|ref|YP_003536532.1| - 2.7e-12 46.4 0.0 3.9e-06 26.7 0.0 2.8 4 0 0 4 4 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|292656635|ref|YP_003536532.1| - 7.9e-11 41.7 0.1 1.3e-07 31.4 0.1 3.0 4 0 0 4 4 3 1 MarR family Fe_dep_repress PF01325.19 gi|292656635|ref|YP_003536532.1| - 2.6e-09 37.1 0.0 0.00019 21.6 0.0 2.5 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|292656635|ref|YP_003536532.1| - 1.7e-08 33.9 1.7 3e-06 26.7 0.2 3.5 3 1 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|292656635|ref|YP_003536532.1| - 3.1e-07 30.3 0.1 8.4e-05 22.5 0.1 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|292656635|ref|YP_003536532.1| - 3.3e-07 30.6 0.0 0.0044 17.3 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator DprA_WH PF17782.1 gi|292656635|ref|YP_003536532.1| - 6.4e-07 29.4 1.7 0.00017 21.6 0.0 2.9 3 0 0 3 3 2 1 DprA winged helix domain HTH_27 PF13463.6 gi|292656635|ref|YP_003536532.1| - 2e-06 28.2 0.1 0.00086 19.8 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|292656635|ref|YP_003536532.1| - 7.4e-06 25.9 0.3 0.035 14.1 0.0 2.7 3 0 0 3 3 2 2 Winged helix-turn helix HTH_11 PF08279.12 gi|292656635|ref|YP_003536532.1| - 1.3e-05 25.0 0.1 6.6e-05 22.8 0.0 2.2 3 0 0 3 3 1 1 HTH domain DUF4423 PF14394.6 gi|292656635|ref|YP_003536532.1| - 1.4e-05 24.8 0.0 0.043 13.5 0.0 2.5 3 0 0 3 3 3 2 Domain of unknown function (DUF4423) PadR PF03551.14 gi|292656635|ref|YP_003536532.1| - 2.9e-05 23.9 0.1 0.0025 17.7 0.1 3.5 3 2 0 3 3 3 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|292656635|ref|YP_003536532.1| - 3.6e-05 23.5 0.8 0.3 10.9 0.1 3.3 3 0 0 3 3 3 2 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|292656635|ref|YP_003536532.1| - 5.7e-05 22.8 0.0 0.017 14.9 0.0 2.7 2 0 0 2 2 2 1 LexA DNA binding domain IF2_N PF04760.15 gi|292656635|ref|YP_003536532.1| - 7.3e-05 22.5 0.0 1.5 8.7 0.0 3.9 3 1 0 3 3 3 1 Translation initiation factor IF-2, N-terminal region HTH_CodY PF08222.11 gi|292656635|ref|YP_003536532.1| - 7.9e-05 22.1 0.0 0.00026 20.5 0.0 1.9 2 0 0 2 2 1 1 CodY helix-turn-helix domain HTH_38 PF13936.6 gi|292656635|ref|YP_003536532.1| - 0.00011 21.9 0.0 0.83 9.5 0.0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_47 PF16221.5 gi|292656635|ref|YP_003536532.1| - 0.00014 21.4 0.0 0.099 12.2 0.1 2.4 2 0 0 2 2 2 1 winged helix-turn-helix GntR PF00392.21 gi|292656635|ref|YP_003536532.1| - 0.00037 20.1 0.0 0.76 9.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|292656635|ref|YP_003536532.1| - 0.00046 20.3 1.8 0.26 11.4 0.0 3.1 4 0 0 4 4 3 1 Helix-turn-helix domain ArsR PF09824.9 gi|292656635|ref|YP_003536532.1| - 0.00067 19.3 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 ArsR transcriptional regulator DUF2250 PF10007.9 gi|292656635|ref|YP_003536532.1| - 0.00093 19.3 0.0 0.06 13.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|292656635|ref|YP_003536532.1| - 0.0014 18.5 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|292656635|ref|YP_003536532.1| - 0.0015 18.4 0.0 0.051 13.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain BLACT_WH PF17778.1 gi|292656635|ref|YP_003536532.1| - 0.0019 18.1 0.8 0.62 10.1 0.1 2.5 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain HTH_10 PF04967.12 gi|292656635|ref|YP_003536532.1| - 0.0026 17.5 0.0 0.012 15.4 0.0 2.1 2 0 0 2 2 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|292656635|ref|YP_003536532.1| - 0.0029 17.4 1.0 0.16 11.8 0.0 3.7 3 1 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|292656635|ref|YP_003536532.1| - 0.0032 17.2 0.0 3.1 7.7 0.0 3.1 2 1 0 2 2 2 1 Homeodomain-like domain DDRGK PF09756.9 gi|292656635|ref|YP_003536532.1| - 0.0037 16.9 0.0 0.0089 15.6 0.0 1.6 2 0 0 2 2 1 1 DDRGK domain B-block_TFIIIC PF04182.12 gi|292656635|ref|YP_003536532.1| - 0.0042 17.2 0.0 0.68 10.1 0.0 2.2 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HemN_C PF06969.16 gi|292656635|ref|YP_003536532.1| - 0.0071 16.4 0.1 3.3 7.8 0.0 3.1 4 0 0 4 4 3 1 HemN C-terminal domain RP-C PF03428.13 gi|292656635|ref|YP_003536532.1| - 0.0079 15.9 0.0 0.064 12.9 0.0 2.2 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_45 PF14947.6 gi|292656635|ref|YP_003536532.1| - 0.018 15.0 0.0 2.8 8.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|292656635|ref|YP_003536532.1| - 0.021 14.2 0.0 8.7 5.8 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain of transposase family ISL3 TnsD PF15978.5 gi|292656635|ref|YP_003536532.1| - 0.022 13.8 0.0 0.24 10.3 0.0 2.0 2 0 0 2 2 2 0 Tn7-like transposition protein D HxlR PF01638.17 gi|292656635|ref|YP_003536532.1| - 0.027 14.3 0.0 0.2 11.5 0.0 2.2 3 0 0 3 3 2 0 HxlR-like helix-turn-helix Sigma70_r4_2 PF08281.12 gi|292656635|ref|YP_003536532.1| - 0.029 14.0 0.0 1.2 8.9 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF742 PF05331.11 gi|292656635|ref|YP_003536532.1| - 0.03 14.1 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Cdc6_C PF09079.11 gi|292656635|ref|YP_003536532.1| - 0.035 14.1 0.0 0.17 11.9 0.0 2.2 2 0 0 2 2 1 0 CDC6, C terminal winged helix domain MerR PF00376.23 gi|292656635|ref|YP_003536532.1| - 0.048 13.4 0.0 0.7 9.7 0.1 2.8 2 1 0 2 2 1 0 MerR family regulatory protein DUF2089 PF09862.9 gi|292656635|ref|YP_003536532.1| - 0.052 13.6 0.0 0.26 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_1 PF00126.27 gi|292656635|ref|YP_003536532.1| - 0.054 13.5 0.0 0.95 9.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.19 gi|292656635|ref|YP_003536532.1| - 0.056 13.0 0.0 13 5.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.12 gi|292656635|ref|YP_003536532.1| - 0.061 13.1 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2513 PF10711.9 gi|292656635|ref|YP_003536532.1| - 0.09 13.1 0.0 0.31 11.3 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_17 PF12728.7 gi|292656635|ref|YP_003536532.1| - 0.13 12.5 0.0 1.4 9.2 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain FaeA PF04703.12 gi|292656635|ref|YP_003536532.1| - 0.16 12.4 0.0 0.37 11.2 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein SMC_ScpB PF04079.16 gi|292656635|ref|YP_003536532.1| - 0.17 11.5 0.0 1.6 8.3 0.0 2.2 2 1 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_34 PF13601.6 gi|292656635|ref|YP_003536532.1| - 0.19 12.0 0.0 0.59 10.3 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF1405 PF07187.11 gi|292656636|ref|YP_003536533.1| - 2.2e-33 115.5 9.9 2.8e-33 115.2 9.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) iPGM_N PF06415.13 gi|292656637|ref|YP_003536534.1| - 1.7e-79 266.2 0.2 2.4e-79 265.8 0.2 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|292656637|ref|YP_003536534.1| - 1.2e-68 231.2 0.0 1.5e-67 227.6 0.0 1.9 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|292656637|ref|YP_003536534.1| - 1e-06 28.6 0.1 2.4e-06 27.4 0.0 1.8 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|292656637|ref|YP_003536534.1| - 0.0023 17.4 0.1 0.036 13.5 0.0 2.9 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|292656637|ref|YP_003536534.1| - 0.0032 17.6 0.1 0.0062 16.7 0.1 1.4 1 0 0 1 1 1 1 PglZ domain SNARE_assoc PF09335.11 gi|292656638|ref|YP_003536535.1| - 1e-08 35.6 11.2 1e-08 35.6 11.2 2.1 2 1 0 2 2 2 1 SNARE associated Golgi protein DUF5353 PF17304.2 gi|292656638|ref|YP_003536535.1| - 0.13 12.1 4.1 0.78 9.5 0.5 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5353) DUF2688 PF10892.8 gi|292656639|ref|YP_003536536.1| - 0.048 13.1 0.1 0.15 11.6 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) DUF21 PF01595.20 gi|292656642|ref|YP_003536539.1| - 6.7e-30 104.1 0.3 9.4e-30 103.6 0.3 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|292656642|ref|YP_003536539.1| - 2e-08 34.6 0.1 7e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_24 PF13412.6 gi|292656643|ref|YP_003536540.1| - 3.6e-12 45.6 0.5 5.7e-12 45.0 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|292656643|ref|YP_003536540.1| - 1e-10 41.3 4.7 2.3e-10 40.1 4.7 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|292656643|ref|YP_003536540.1| - 9.1e-07 28.7 0.1 1.6e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|292656643|ref|YP_003536540.1| - 2.1e-05 24.3 0.4 0.00011 22.0 0.3 2.0 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|292656643|ref|YP_003536540.1| - 3.1e-05 24.1 0.0 9.8e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|292656643|ref|YP_003536540.1| - 0.00084 19.1 0.2 0.002 17.9 0.2 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292656643|ref|YP_003536540.1| - 0.001 19.1 0.3 0.002 18.2 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|292656643|ref|YP_003536540.1| - 0.0017 18.8 0.2 0.0039 17.6 0.1 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain AsnC_trans_reg PF01037.21 gi|292656643|ref|YP_003536540.1| - 0.0033 17.4 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HrcA_DNA-bdg PF03444.15 gi|292656643|ref|YP_003536540.1| - 0.0038 16.8 0.0 0.0075 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_DeoR PF08220.12 gi|292656643|ref|YP_003536540.1| - 0.0065 16.2 0.2 0.013 15.2 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|292656643|ref|YP_003536540.1| - 0.0091 15.6 0.5 0.037 13.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Put_DNA-bind_N PF06971.13 gi|292656643|ref|YP_003536540.1| - 0.012 15.6 0.2 0.026 14.5 0.2 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_23 PF13384.6 gi|292656643|ref|YP_003536540.1| - 0.014 15.1 0.2 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|292656643|ref|YP_003536540.1| - 0.018 15.0 0.9 0.048 13.6 0.1 2.1 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|292656643|ref|YP_003536540.1| - 0.02 14.6 0.1 0.038 13.7 0.1 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.22 gi|292656643|ref|YP_003536540.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|292656643|ref|YP_003536540.1| - 0.036 13.9 0.2 0.082 12.7 0.2 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_5 PF01022.20 gi|292656643|ref|YP_003536540.1| - 0.036 13.9 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PaaX PF07848.12 gi|292656643|ref|YP_003536540.1| - 0.037 14.3 0.1 0.078 13.2 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.20 gi|292656643|ref|YP_003536540.1| - 0.047 14.1 0.0 0.089 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GerE PF00196.19 gi|292656643|ref|YP_003536540.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Nuc_N PF14448.6 gi|292656643|ref|YP_003536540.1| - 0.12 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Nuclease N terminal Sigma70_r4 PF04545.16 gi|292656643|ref|YP_003536540.1| - 0.14 11.7 0.6 0.96 9.0 0.2 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_Tc3_2 PF01498.18 gi|292656643|ref|YP_003536540.1| - 0.15 12.3 0.4 0.33 11.2 0.2 1.6 2 0 0 2 2 2 0 Transposase DUF4423 PF14394.6 gi|292656643|ref|YP_003536540.1| - 0.2 11.3 0.0 14 5.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) zf-Mss51 PF13824.6 gi|292656644|ref|YP_003536541.1| - 0.019 15.0 6.9 0.03 14.4 6.9 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2HC5 PF06221.13 gi|292656644|ref|YP_003536541.1| - 0.052 13.5 0.7 0.052 13.5 0.7 1.8 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type A2L_zn_ribbon PF08792.10 gi|292656644|ref|YP_003536541.1| - 0.25 11.1 5.1 3.9 7.3 0.2 2.3 1 1 1 2 2 2 0 A2L zinc ribbon domain Rad50_zn_hook PF04423.14 gi|292656644|ref|YP_003536541.1| - 0.38 10.6 1.8 0.45 10.4 1.8 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif SQS_PSY PF00494.19 gi|292656645|ref|YP_003536542.1| - 2.5e-65 220.6 7.6 3.1e-65 220.3 7.6 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase HTH_10 PF04967.12 gi|292656646|ref|YP_003536543.1| - 4.7e-06 26.3 0.1 1.5e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Caroten_synth PF04240.12 gi|292656647|ref|YP_003536544.1| - 2.2e-61 207.4 19.1 3.1e-61 206.9 19.1 1.2 1 0 0 1 1 1 1 Carotenoid biosynthesis protein UbiA PF01040.18 gi|292656648|ref|YP_003536545.1| - 2.9e-28 98.9 19.9 4.3e-28 98.3 19.9 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF2955 PF11168.8 gi|292656648|ref|YP_003536545.1| - 0.27 11.1 6.1 5.5 6.8 1.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2955) Amino_oxidase PF01593.24 gi|292656649|ref|YP_003536546.1| - 4.1e-36 125.2 0.0 5.9e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|292656649|ref|YP_003536546.1| - 2.5e-18 66.1 0.1 6.9e-18 64.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|292656649|ref|YP_003536546.1| - 9.8e-13 48.4 0.0 5.4e-08 32.8 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292656649|ref|YP_003536546.1| - 9.7e-10 38.1 0.3 3.5e-06 26.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292656649|ref|YP_003536546.1| - 1.1e-08 35.5 0.2 7e-06 26.5 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|292656649|ref|YP_003536546.1| - 2.7e-07 29.6 0.0 0.00072 18.4 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|292656649|ref|YP_003536546.1| - 1.3e-06 27.8 1.4 4.3e-06 26.1 1.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|292656649|ref|YP_003536546.1| - 2.8e-06 27.0 0.0 3.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|292656649|ref|YP_003536546.1| - 0.00011 21.6 0.0 0.0022 17.3 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|292656649|ref|YP_003536546.1| - 0.00013 21.4 0.1 0.0002 20.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|292656649|ref|YP_003536546.1| - 0.00019 21.4 0.1 0.85 9.6 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.17 gi|292656649|ref|YP_003536546.1| - 0.00051 19.4 0.3 0.00079 18.7 0.3 1.2 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|292656649|ref|YP_003536546.1| - 0.0029 16.8 0.6 0.0042 16.2 0.6 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|292656649|ref|YP_003536546.1| - 0.018 15.5 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding MCRA PF06100.11 gi|292656649|ref|YP_003536546.1| - 0.047 12.5 0.0 0.065 12.0 0.0 1.1 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|292656649|ref|YP_003536546.1| - 0.057 12.7 0.2 0.1 11.9 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|292656649|ref|YP_003536546.1| - 0.069 12.0 0.3 0.1 11.4 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|292656649|ref|YP_003536546.1| - 0.17 11.4 0.2 0.27 10.8 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|292656649|ref|YP_003536546.1| - 0.18 11.7 0.1 0.27 11.1 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|292656649|ref|YP_003536546.1| - 0.24 11.1 0.1 0.38 10.4 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.25 gi|292656650|ref|YP_003536547.1| - 1.3e-41 142.2 0.5 1.6e-41 142.0 0.5 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292656650|ref|YP_003536547.1| - 4.1e-38 131.3 2.9 5.2e-38 130.9 2.9 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|292656650|ref|YP_003536547.1| - 4e-10 39.9 1.4 5.3e-10 39.5 1.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|292656650|ref|YP_003536547.1| - 7.1e-07 28.9 1.5 7.8e-06 25.5 0.6 2.4 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|292656650|ref|YP_003536547.1| - 0.00016 21.0 0.0 0.00058 19.1 0.0 1.8 1 1 0 2 2 2 1 Male sterility protein THF_DHG_CYH_C PF02882.19 gi|292656650|ref|YP_003536547.1| - 0.011 15.0 0.1 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.15 gi|292656650|ref|YP_003536547.1| - 0.02 14.7 2.9 0.039 13.8 2.9 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein GDP_Man_Dehyd PF16363.5 gi|292656650|ref|YP_003536547.1| - 0.026 13.9 0.1 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase NmrA PF05368.13 gi|292656650|ref|YP_003536547.1| - 0.47 10.0 1.6 0.76 9.3 1.6 1.4 1 0 0 1 1 1 0 NmrA-like family Zip PF02535.22 gi|292656651|ref|YP_003536548.1| - 0.00016 21.0 8.9 0.00016 21.0 8.9 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter GARS_A PF01071.19 gi|292656652|ref|YP_003536549.1| - 4.4e-13 49.4 0.0 1.2e-12 48.1 0.0 1.8 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_C PF02843.16 gi|292656652|ref|YP_003536549.1| - 1e-08 35.3 0.1 2.2e-08 34.2 0.1 1.8 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_5 PF13549.6 gi|292656652|ref|YP_003536549.1| - 0.015 14.7 0.0 0.048 13.1 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain Glyco_transf_4 PF13439.6 gi|292656652|ref|YP_003536549.1| - 0.043 13.8 0.9 0.92 9.5 0.1 3.1 3 1 0 3 3 3 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|292656652|ref|YP_003536549.1| - 0.063 13.7 0.9 2.4 8.6 0.2 3.0 3 0 0 3 3 3 0 Glycosyl transferase 4-like domain DUF1980 PF09323.10 gi|292656653|ref|YP_003536550.1| - 0.0043 17.0 0.3 0.0043 17.0 0.3 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1980) UCR_TM PF02921.14 gi|292656653|ref|YP_003536550.1| - 0.029 14.9 0.0 0.094 13.2 0.0 1.8 2 0 0 2 2 2 0 Ubiquinol cytochrome reductase transmembrane region Pes-10 PF07149.11 gi|292656653|ref|YP_003536550.1| - 0.059 12.4 0.3 0.062 12.3 0.3 1.1 1 0 0 1 1 1 0 Pes-10 PGF-CTERM PF18204.1 gi|292656654|ref|YP_003536551.1| - 6.6e-07 29.1 5.5 6.6e-07 29.1 5.5 2.5 2 0 0 2 2 2 1 PGF-CTERM motif CARDB PF07705.11 gi|292656654|ref|YP_003536551.1| - 7.5e-05 22.9 4.5 0.0042 17.3 0.1 2.6 2 1 0 2 2 2 2 CARDB GPI-anchored PF10342.9 gi|292656654|ref|YP_003536551.1| - 0.009 16.8 0.5 0.43 11.4 0.0 2.6 2 0 0 2 2 2 1 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF4832 PF16116.5 gi|292656654|ref|YP_003536551.1| - 0.024 14.5 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4832) DUF824 PF05688.11 gi|292656654|ref|YP_003536551.1| - 0.026 14.4 0.1 0.12 12.2 0.1 2.1 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) MG4 PF17789.1 gi|292656654|ref|YP_003536551.1| - 0.11 12.6 0.5 1 9.5 0.1 2.3 2 0 0 2 2 2 0 Macroglobulin domain MG4 Cadherin-like PF12733.7 gi|292656654|ref|YP_003536551.1| - 7.4 7.2 8.8 8 7.1 1.0 2.8 2 2 0 2 2 2 0 Cadherin-like beta sandwich domain Usp PF00582.26 gi|292656655|ref|YP_003536552.1| - 4e-12 46.8 0.2 5.1e-12 46.5 0.2 1.2 1 1 0 1 1 1 1 Universal stress protein family Saccharop_dh_N PF04455.12 gi|292656657|ref|YP_003536554.1| - 4.7e-37 126.4 0.0 9.3e-37 125.5 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|292656657|ref|YP_003536554.1| - 0.00023 20.9 0.1 0.046 13.5 0.0 2.5 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|292656657|ref|YP_003536554.1| - 0.0013 18.1 0.0 0.055 12.7 0.0 2.2 1 1 1 2 2 2 2 Deoxyhypusine synthase N_Asn_amidohyd PF14736.6 gi|292656658|ref|YP_003536555.1| - 0.019 14.1 0.1 0.027 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein N-terminal asparagine amidohydrolase Hydrolase_4 PF12146.8 gi|292656659|ref|YP_003536556.1| - 1.1e-11 44.5 0.0 1.5e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|292656659|ref|YP_003536556.1| - 8.5e-11 42.9 14.4 1.2e-10 42.4 14.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|292656659|ref|YP_003536556.1| - 3.3e-10 40.1 0.0 8.1e-07 28.9 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|292656659|ref|YP_003536556.1| - 6.6e-05 22.6 0.0 0.00031 20.4 0.0 1.8 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|292656659|ref|YP_003536556.1| - 0.00026 20.6 0.0 0.014 15.0 0.0 2.3 2 1 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|292656659|ref|YP_003536556.1| - 0.0046 16.7 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 gi|292656659|ref|YP_003536556.1| - 0.01 15.3 0.1 2 7.9 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_4 PF08386.10 gi|292656659|ref|YP_003536556.1| - 0.016 15.3 0.0 0.058 13.5 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein AXE1 PF05448.12 gi|292656659|ref|YP_003536556.1| - 0.11 11.1 0.1 0.44 9.2 0.1 2.0 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) SecY PF00344.20 gi|292656662|ref|YP_003536559.1| - 9.6e-69 232.0 18.0 1.2e-68 231.7 18.0 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|292656662|ref|YP_003536559.1| - 2e-12 46.7 0.7 2e-12 46.7 0.7 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|292656663|ref|YP_003536560.1| - 2.2e-17 63.9 0.1 2.2e-17 63.9 0.1 1.5 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FoP_duplication PF13865.6 gi|292656663|ref|YP_003536560.1| - 6.2 7.5 11.0 12 6.5 11.0 1.6 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 Ribosomal_L30 PF00327.20 gi|292656664|ref|YP_003536561.1| - 6.7e-12 45.1 0.0 1.3e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e OHCU_decarbox PF09349.10 gi|292656664|ref|YP_003536561.1| - 0.096 13.2 0.0 0.14 12.6 0.0 1.3 1 1 0 1 1 1 0 OHCU decarboxylase Ribosomal_S5_C PF03719.15 gi|292656665|ref|YP_003536562.1| - 6e-23 80.1 0.1 9.4e-23 79.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|292656665|ref|YP_003536562.1| - 5.1e-22 77.6 1.8 8.5e-22 76.9 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain DUF1421 PF07223.11 gi|292656665|ref|YP_003536562.1| - 0.12 12.2 0.4 1.5 8.7 0.0 2.5 3 0 0 3 3 3 0 UBA-like domain (DUF1421) Ribosomal_L5e PF17144.4 gi|292656666|ref|YP_003536563.1| - 6e-30 104.4 0.0 2.7e-18 66.5 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|292656666|ref|YP_003536563.1| - 8.6e-07 29.3 0.0 1.3e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|292656667|ref|YP_003536564.1| - 1.2e-57 194.0 8.8 1.4e-57 193.8 8.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Lant_dehydr_C PF14028.6 gi|292656667|ref|YP_003536564.1| - 0.042 13.4 1.4 0.049 13.2 1.4 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term SHOCT PF09851.9 gi|292656667|ref|YP_003536564.1| - 0.052 13.3 1.1 0.2 11.4 0.4 2.3 2 0 0 2 2 2 0 Short C-terminal domain Ribosomal_L32e PF01655.18 gi|292656668|ref|YP_003536565.1| - 2.1e-31 108.5 0.1 1.1e-30 106.3 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|292656668|ref|YP_003536565.1| - 3.2e-14 53.3 2.9 3.3e-13 50.0 0.5 2.9 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|292656668|ref|YP_003536565.1| - 3.3e-08 33.0 0.5 0.0057 16.5 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|292656668|ref|YP_003536565.1| - 8.5e-07 29.0 0.4 2.7e-06 27.4 0.4 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|292656668|ref|YP_003536565.1| - 1.9e-06 27.6 0.0 8.2e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|292656668|ref|YP_003536565.1| - 0.00024 21.3 0.8 0.16 12.3 0.1 3.2 2 1 1 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|292656668|ref|YP_003536565.1| - 0.0007 19.8 0.0 0.004 17.4 0.0 2.1 1 1 1 2 2 2 1 Pathogenicity locus HHH_8 PF14716.6 gi|292656668|ref|YP_003536565.1| - 0.0019 18.5 0.8 0.4 11.1 0.1 3.0 2 1 1 3 3 3 1 Helix-hairpin-helix domain LytR_C PF13399.6 gi|292656668|ref|YP_003536565.1| - 0.13 13.2 2.8 2.3 9.3 1.3 3.0 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator PG_binding_2 PF08823.11 gi|292656668|ref|YP_003536565.1| - 0.17 12.2 2.7 0.5 10.7 2.7 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain BAF PF02961.14 gi|292656668|ref|YP_003536565.1| - 0.19 12.2 0.0 7.8 7.0 0.0 2.5 1 1 1 2 2 2 0 Barrier to autointegration factor CDC45 PF02724.14 gi|292656668|ref|YP_003536565.1| - 2.7 6.2 5.4 3.1 6.0 5.4 1.1 1 0 0 1 1 1 0 CDC45-like protein HTH_32 PF13565.6 gi|292656668|ref|YP_003536565.1| - 3.1 8.5 5.9 10 6.9 2.5 2.7 2 1 0 2 2 2 0 Homeodomain-like domain Ribosomal_L6 PF00347.23 gi|292656669|ref|YP_003536566.1| - 3.2e-26 91.8 1.5 4.7e-12 46.4 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Crystall_4 PF17945.1 gi|292656669|ref|YP_003536566.1| - 0.11 13.0 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Beta/Gamma crystallin DUF2884 PF11101.8 gi|292656669|ref|YP_003536566.1| - 0.13 11.8 0.2 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2884) Ribosomal_S8 PF00410.19 gi|292656670|ref|YP_003536567.1| - 1.4e-23 83.2 0.0 1.7e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|292656671|ref|YP_003536568.1| - 6.6e-13 48.2 4.5 7.4e-13 48.1 4.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|292656671|ref|YP_003536568.1| - 0.0036 17.2 0.2 0.0042 17.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L5_C PF00673.21 gi|292656672|ref|YP_003536569.1| - 5.5e-20 71.3 0.0 9.6e-20 70.6 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|292656672|ref|YP_003536569.1| - 3.8e-17 62.4 0.0 6.5e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|292656673|ref|YP_003536570.1| - 2.2e-20 72.3 0.0 5e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|292656673|ref|YP_003536570.1| - 1.2e-11 44.5 0.2 2e-11 43.8 0.2 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|292656673|ref|YP_003536570.1| - 9.7e-05 22.0 0.0 0.0003 20.5 0.0 1.9 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|292656673|ref|YP_003536570.1| - 0.012 15.6 2.4 0.013 15.5 0.5 2.2 2 0 0 2 2 2 0 KOW motif Ribosomal_L26 PF16906.5 gi|292656674|ref|YP_003536571.1| - 3.1e-23 82.0 0.0 3.5e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|292656674|ref|YP_003536571.1| - 0.00012 21.9 0.1 0.00012 21.9 0.1 2.0 2 1 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.19 gi|292656675|ref|YP_003536572.1| - 2.8e-37 127.5 0.8 3.3e-37 127.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TRAM PF01938.20 gi|292656675|ref|YP_003536572.1| - 0.045 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 TRAM domain Ribosomal_S17 PF00366.20 gi|292656676|ref|YP_003536573.1| - 2.1e-24 85.4 1.5 2.6e-24 85.1 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|292656676|ref|YP_003536573.1| - 0.0064 16.8 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|292656677|ref|YP_003536574.1| - 2.5e-28 97.8 0.0 2.9e-28 97.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|292656678|ref|YP_003536575.1| - 5.1e-17 61.6 0.1 6.3e-17 61.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|292656679|ref|YP_003536576.1| - 1.4e-20 73.6 0.7 3.1e-20 72.5 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|292656679|ref|YP_003536576.1| - 6.4e-16 57.9 0.0 1.3e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|292656679|ref|YP_003536576.1| - 0.008 16.2 0.0 0.064 13.3 0.0 2.4 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|292656679|ref|YP_003536576.1| - 0.013 15.4 1.4 0.04 13.8 0.4 2.4 2 0 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|292656679|ref|YP_003536576.1| - 7.6 6.5 7.2 0.75 9.7 0.1 2.7 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|292656680|ref|YP_003536577.1| - 5.1e-20 71.6 0.0 6.9e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.6 gi|292656680|ref|YP_003536577.1| - 0.062 12.7 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain Ribosomal_S19 PF00203.21 gi|292656681|ref|YP_003536578.1| - 1.4e-29 101.8 0.0 1.8e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|292656681|ref|YP_003536578.1| - 0.0049 16.0 0.1 0.0049 16.0 0.1 1.1 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Ribosomal_L2_C PF03947.18 gi|292656682|ref|YP_003536579.1| - 1.7e-47 160.7 2.2 2.6e-47 160.1 2.2 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|292656682|ref|YP_003536579.1| - 1.2e-17 63.7 0.0 1.8e-16 59.8 0.0 2.7 3 0 0 3 3 3 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|292656683|ref|YP_003536580.1| - 2.1e-15 56.8 3.9 7.2e-15 55.1 3.9 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.22 gi|292656684|ref|YP_003536581.1| - 1.9e-43 148.4 0.1 2.2e-43 148.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|292656685|ref|YP_003536582.1| - 7.1e-107 357.6 0.0 2.3e-106 355.9 0.0 1.7 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|292656686|ref|YP_003536583.1| - 8.6e-66 222.3 0.0 9.7e-66 222.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|292656686|ref|YP_003536583.1| - 0.058 13.2 0.1 0.23 11.3 0.1 1.9 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 DUF4131 PF13567.6 gi|292656687|ref|YP_003536584.1| - 2.8 7.6 6.4 4.9 6.8 6.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Tad PF13400.6 gi|292656687|ref|YP_003536584.1| - 6.5 7.1 13.2 2.5 8.5 1.4 2.8 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like Rubredoxin_2 PF18073.1 gi|292656689|ref|YP_003536586.1| - 0.0009 18.9 2.2 0.011 15.4 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain HypA PF01155.19 gi|292656689|ref|YP_003536586.1| - 0.0039 17.2 0.1 0.0046 16.9 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|292656689|ref|YP_003536586.1| - 0.2 11.8 3.4 0.53 10.4 3.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain CpXC PF14353.6 gi|292656689|ref|YP_003536586.1| - 0.31 11.1 1.1 7.4 6.6 0.8 2.3 1 1 0 1 1 1 0 CpXC protein HalOD2 PF18547.1 gi|292656689|ref|YP_003536586.1| - 0.69 9.9 4.7 0.47 10.4 0.4 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-IS66 PF13005.7 gi|292656689|ref|YP_003536586.1| - 3.2 8.2 8.2 7.3 7.1 0.4 3.2 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Virul_fac_BrkB PF03631.15 gi|292656690|ref|YP_003536587.1| - 1.4e-38 133.0 23.2 1.6e-38 132.8 23.2 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF2512 PF10710.9 gi|292656690|ref|YP_003536587.1| - 3.3 7.4 7.3 0.68 9.6 0.5 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2512) ABC2_membrane_5 PF13346.6 gi|292656690|ref|YP_003536587.1| - 8.2 5.9 11.1 1.1 8.8 6.6 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein Thiamine_BP PF01910.17 gi|292656691|ref|YP_003536588.1| - 1.7e-24 85.6 0.4 1.9e-24 85.4 0.4 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HalOD1 PF18545.1 gi|292656691|ref|YP_003536588.1| - 0.053 13.8 0.9 0.084 13.2 0.5 1.6 1 1 0 1 1 1 0 Halobacterial output domain 1 MCH PF02289.16 gi|292656692|ref|YP_003536589.1| - 1.2e-116 389.3 0.0 1.4e-116 389.2 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU PF00009.27 gi|292656694|ref|YP_003536591.1| - 4.6e-35 120.9 0.0 7.8e-35 120.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|292656694|ref|YP_003536591.1| - 2.9e-10 40.4 0.3 8.9e-10 38.8 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|292656694|ref|YP_003536591.1| - 2.2e-07 31.1 0.2 1.6e-06 28.4 0.2 2.3 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain ATP_bind_1 PF03029.17 gi|292656694|ref|YP_003536591.1| - 0.011 15.5 0.8 0.07 12.9 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|292656694|ref|YP_003536591.1| - 0.022 14.8 0.0 0.068 13.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase GDYXXLXY PF14345.6 gi|292656694|ref|YP_003536591.1| - 0.029 14.2 0.0 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 GDYXXLXY protein RsgA_GTPase PF03193.16 gi|292656694|ref|YP_003536591.1| - 0.034 14.0 0.0 0.77 9.7 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase DnaJ PF00226.31 gi|292656695|ref|YP_003536592.1| - 8.7e-11 41.8 0.4 1.4e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 DnaJ domain CPP1-like PF11833.8 gi|292656695|ref|YP_003536592.1| - 2.1 8.0 6.5 10 5.7 1.4 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like OMPdecase PF00215.24 gi|292656696|ref|YP_003536593.1| - 2.2e-30 105.9 0.0 2.8e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family MFS_1 PF07690.16 gi|292656697|ref|YP_003536594.1| - 7.9e-17 61.2 45.5 1.2e-11 44.2 17.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|292656697|ref|YP_003536594.1| - 0.0068 15.3 0.5 0.025 13.4 0.4 2.0 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|292656697|ref|YP_003536594.1| - 0.08 11.8 11.7 0.098 11.5 4.0 3.0 2 2 0 2 2 2 0 Sugar (and other) transporter DUF3767 PF12597.8 gi|292656697|ref|YP_003536594.1| - 0.27 11.1 1.3 1.1 9.1 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3767) QRPTase_C PF01729.19 gi|292656698|ref|YP_003536595.1| - 1.7e-51 174.4 0.1 2.7e-51 173.7 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|292656698|ref|YP_003536595.1| - 1.1e-18 67.1 0.3 2.7e-18 65.8 0.3 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_2 PF00890.24 gi|292656699|ref|YP_003536596.1| - 2e-75 254.5 10.8 2.8e-75 254.0 10.8 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|292656699|ref|YP_003536596.1| - 2e-10 40.4 1.3 7.2e-06 25.4 1.9 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292656699|ref|YP_003536596.1| - 4.1e-09 36.5 10.5 5.8e-09 36.0 6.5 2.6 1 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|292656699|ref|YP_003536596.1| - 1.4e-07 31.0 0.9 4.8e-06 25.9 1.3 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|292656699|ref|YP_003536596.1| - 9.6e-07 28.5 7.5 1.4e-06 27.9 4.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292656699|ref|YP_003536596.1| - 2.9e-06 26.3 0.2 0.0029 16.4 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|292656699|ref|YP_003536596.1| - 4.6e-05 22.8 1.1 9.1e-05 21.9 1.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|292656699|ref|YP_003536596.1| - 0.00012 22.2 0.7 0.00041 20.5 0.7 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|292656699|ref|YP_003536596.1| - 0.001 18.4 0.1 0.0021 17.4 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|292656699|ref|YP_003536596.1| - 0.0084 16.6 0.2 0.027 15.0 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 gi|292656699|ref|YP_003536596.1| - 0.025 14.6 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 Fumarate reductase flavoprotein C-term NAD_binding_7 PF13241.6 gi|292656699|ref|YP_003536596.1| - 0.038 14.4 0.2 0.076 13.5 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|292656699|ref|YP_003536596.1| - 0.11 11.7 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|292656699|ref|YP_003536596.1| - 0.13 12.1 0.6 0.26 11.2 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|292656699|ref|YP_003536596.1| - 0.32 9.8 1.1 2.1 7.1 0.3 2.0 2 0 0 2 2 2 0 Tryptophan halogenase NadA PF02445.16 gi|292656700|ref|YP_003536597.1| - 1.3e-96 323.4 0.0 1.4e-96 323.2 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Amidohydro_3 PF07969.11 gi|292656701|ref|YP_003536598.1| - 2.4e-24 86.7 5.0 6.4e-24 85.3 0.2 2.4 2 1 1 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|292656701|ref|YP_003536598.1| - 0.00077 18.9 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|292656701|ref|YP_003536598.1| - 0.11 12.8 0.1 0.23 11.8 0.1 1.6 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain HMG-CoA_red PF00368.18 gi|292656702|ref|YP_003536599.1| - 2e-127 425.2 10.6 2.3e-127 425.0 10.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.11 gi|292656702|ref|YP_003536599.1| - 9.2 6.6 12.0 0.34 11.2 1.7 3.3 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1522) FYDLN_acid PF09538.10 gi|292656703|ref|YP_003536600.1| - 0.018 15.7 1.2 0.025 15.2 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF1922 PF09082.10 gi|292656703|ref|YP_003536600.1| - 0.022 15.0 0.1 0.036 14.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) Zn-ribbon_8 PF09723.10 gi|292656703|ref|YP_003536600.1| - 0.076 13.1 0.3 0.17 12.1 0.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|292656703|ref|YP_003536600.1| - 0.095 13.5 0.6 0.18 12.5 0.6 1.6 1 1 0 1 1 1 0 Zinc-binding domain Cupin_2 PF07883.11 gi|292656704|ref|YP_003536601.1| - 5.6e-15 54.8 1.8 7.4e-15 54.4 1.8 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|292656704|ref|YP_003536601.1| - 6.3e-05 22.9 0.3 7.6e-05 22.6 0.3 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|292656704|ref|YP_003536601.1| - 0.039 13.6 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 Cupin Ectoine_synth PF06339.12 gi|292656704|ref|YP_003536601.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase PCO_ADO PF07847.12 gi|292656704|ref|YP_003536601.1| - 0.15 11.5 0.1 0.53 9.7 0.0 1.8 1 1 1 2 2 2 0 PCO_ADO Auxin_BP PF02041.16 gi|292656704|ref|YP_003536601.1| - 0.16 11.6 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein Iso_dh PF00180.20 gi|292656707|ref|YP_003536604.1| - 2e-108 362.6 0.0 3.4e-108 361.9 0.0 1.3 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RHH_1 PF01402.21 gi|292656707|ref|YP_003536604.1| - 0.035 14.1 0.3 1.7 8.7 0.0 3.4 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|292656707|ref|YP_003536604.1| - 0.15 12.0 0.1 0.44 10.5 0.1 1.8 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Asparaginase_2 PF01112.18 gi|292656708|ref|YP_003536605.1| - 9.9e-57 192.3 9.6 2.1e-56 191.2 9.6 1.5 1 1 0 1 1 1 1 Asparaginase adh_short PF00106.25 gi|292656709|ref|YP_003536606.1| - 3.9e-23 81.9 0.0 1.5e-22 80.0 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|292656709|ref|YP_003536606.1| - 5.4e-15 55.6 0.0 7.4e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|292656709|ref|YP_003536606.1| - 1.2e-06 28.5 0.0 2.1e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|292656709|ref|YP_003536606.1| - 0.0066 15.9 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|292656709|ref|YP_003536606.1| - 0.046 12.8 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain DUF3398 PF11878.8 gi|292656710|ref|YP_003536607.1| - 0.095 13.1 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3398) DSBA PF01323.20 gi|292656711|ref|YP_003536608.1| - 2.6e-36 125.2 0.0 3e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|292656711|ref|YP_003536608.1| - 2.5e-10 40.8 0.0 1.2e-06 28.8 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|292656711|ref|YP_003536608.1| - 7.3e-05 23.2 0.2 0.031 14.7 0.2 2.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|292656711|ref|YP_003536608.1| - 0.015 15.0 0.0 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin E1_dh PF00676.20 gi|292656714|ref|YP_003536611.1| - 1.3e-65 221.4 0.0 1.6e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|292656714|ref|YP_003536611.1| - 4.7e-06 26.0 0.1 8.9e-06 25.1 0.1 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|292656714|ref|YP_003536611.1| - 1.8e-05 24.6 0.4 0.00029 20.6 0.4 2.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|292656714|ref|YP_003536611.1| - 0.0037 16.3 0.0 0.0055 15.7 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 gi|292656715|ref|YP_003536612.1| - 3.2e-45 154.0 0.6 4.5e-45 153.5 0.6 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|292656715|ref|YP_003536612.1| - 6.2e-33 113.3 0.1 9.6e-33 112.7 0.1 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|292656715|ref|YP_003536612.1| - 0.00011 22.4 0.0 0.00025 21.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Biotin_lipoyl PF00364.22 gi|292656716|ref|YP_003536613.1| - 4.8e-17 61.6 0.0 5.6e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|292656716|ref|YP_003536613.1| - 3e-10 39.7 0.0 3.5e-05 23.6 0.1 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|292656716|ref|YP_003536613.1| - 1e-05 24.9 0.0 0.0043 16.3 0.1 2.0 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion QRPTase_N PF02749.16 gi|292656716|ref|YP_003536613.1| - 6.5e-05 22.9 0.1 0.28 11.3 0.0 2.1 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 gi|292656716|ref|YP_003536613.1| - 0.00017 21.5 0.1 0.00099 19.0 0.1 1.8 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|292656716|ref|YP_003536613.1| - 0.0025 18.5 0.2 0.25 12.1 0.1 2.1 1 1 1 2 2 2 1 HlyD family secretion protein PTS_EIIA_1 PF00358.20 gi|292656716|ref|YP_003536613.1| - 0.013 15.3 0.0 0.52 10.1 0.0 2.2 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.19 gi|292656716|ref|YP_003536613.1| - 0.083 12.8 0.1 0.099 12.5 0.1 1.2 1 0 0 1 1 1 0 Glycine cleavage H-protein NQRA PF05896.11 gi|292656716|ref|YP_003536613.1| - 0.1 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2118 PF09891.9 gi|292656716|ref|YP_003536613.1| - 0.14 12.1 0.2 1.6 8.7 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) PP_kinase_C_1 PF17941.1 gi|292656717|ref|YP_003536614.1| - 3.4e-71 238.2 0.1 5.9e-71 237.4 0.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|292656717|ref|YP_003536614.1| - 5.6e-70 234.3 0.0 3.6e-68 228.4 0.0 2.2 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|292656717|ref|YP_003536614.1| - 2.8e-57 193.6 0.0 5.9e-57 192.5 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|292656717|ref|YP_003536614.1| - 7.2e-35 119.6 0.0 1.6e-34 118.4 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|292656717|ref|YP_003536614.1| - 1.5e-11 44.3 0.0 4.2e-06 26.7 0.0 2.6 2 1 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|292656717|ref|YP_003536614.1| - 0.024 14.2 0.3 0.024 14.2 0.3 1.8 2 0 0 2 2 2 0 Enolase C-terminal domain-like Metallophos PF00149.28 gi|292656718|ref|YP_003536615.1| - 3.2e-14 53.9 0.6 9.5e-14 52.4 0.5 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|292656718|ref|YP_003536615.1| - 1.5e-09 38.3 0.1 3e-09 37.3 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|292656718|ref|YP_003536615.1| - 0.0014 18.0 0.5 0.0087 15.4 0.0 2.3 2 1 1 3 3 3 1 Metallophosphoesterase, calcineurin superfamily Peptidase_M24 PF00557.24 gi|292656719|ref|YP_003536616.1| - 3.6e-42 144.4 0.5 4.3e-42 144.2 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Ad_Cy_reg PF16701.5 gi|292656719|ref|YP_003536616.1| - 0.075 12.8 0.5 0.22 11.3 0.1 1.9 2 0 0 2 2 2 0 Adenylate cyclase regulatory domain HIT PF01230.23 gi|292656720|ref|YP_003536617.1| - 5.9e-12 46.2 0.0 8.9e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|292656720|ref|YP_003536617.1| - 9.9e-05 22.8 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|292656720|ref|YP_003536617.1| - 0.00082 19.2 0.0 0.0019 18.1 0.0 1.5 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 Cation_efflux PF01545.21 gi|292656721|ref|YP_003536618.1| - 1.1e-40 139.6 3.4 1.2e-40 139.3 3.4 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|292656721|ref|YP_003536618.1| - 1.2e-17 63.8 2.1 1.8e-17 63.2 2.1 1.2 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter IBV_3C PF03620.13 gi|292656721|ref|YP_003536618.1| - 0.11 13.0 0.1 0.27 11.8 0.1 1.6 1 0 0 1 1 1 0 IBV 3C protein Peptidase_S24 PF00717.23 gi|292656722|ref|YP_003536619.1| - 2.3e-05 24.3 0.2 0.00015 21.7 0.2 2.1 1 1 0 1 1 1 1 Peptidase S24-like Acetyltransf_10 PF13673.7 gi|292656723|ref|YP_003536620.1| - 8.1e-11 42.0 0.0 1.1e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292656723|ref|YP_003536620.1| - 4.7e-10 39.7 0.0 5.5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|292656723|ref|YP_003536620.1| - 1.9e-09 37.8 0.0 2.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656723|ref|YP_003536620.1| - 2.3e-06 27.7 0.0 3.5e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 gi|292656723|ref|YP_003536620.1| - 0.00086 18.8 0.0 0.0031 17.0 0.0 1.7 2 0 0 2 2 2 1 GNAT acetyltransferase 2 FR47 PF08445.10 gi|292656723|ref|YP_003536620.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|292656723|ref|YP_003536620.1| - 0.016 15.4 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NodA PF02474.15 gi|292656723|ref|YP_003536620.1| - 0.023 14.4 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein A (NodA) Acetyltransf_3 PF13302.7 gi|292656723|ref|YP_003536620.1| - 0.038 14.7 0.0 0.04 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|292656724|ref|YP_003536621.1| - 1.6e-22 80.6 0.1 2.9e-22 79.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|292656724|ref|YP_003536621.1| - 3e-19 68.9 0.1 6.9e-19 67.7 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|292656724|ref|YP_003536621.1| - 7.3e-05 22.7 0.2 0.00017 21.5 0.2 1.7 1 0 0 1 1 1 1 TRAM domain PQQ_2 PF13360.6 gi|292656725|ref|YP_003536622.1| - 1.1e-27 97.2 8.9 1.9e-13 50.6 0.2 2.5 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|292656725|ref|YP_003536622.1| - 2.1e-25 88.5 18.9 5.8e-07 29.8 0.9 8.6 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|292656725|ref|YP_003536622.1| - 4.9e-16 57.8 10.3 6e-06 25.9 0.0 6.5 6 0 0 6 6 6 6 PQQ enzyme repeat PQQ_2 PF13360.6 gi|292656726|ref|YP_003536623.1| - 2.2e-23 83.1 12.5 1.7e-12 47.4 5.1 3.6 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|292656726|ref|YP_003536623.1| - 5.8e-20 71.2 32.8 0.018 15.6 2.5 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|292656726|ref|YP_003536623.1| - 2.4e-07 30.3 4.5 0.2 11.6 0.0 6.4 6 0 0 6 6 6 2 PQQ enzyme repeat TAT_signal PF10518.9 gi|292656726|ref|YP_003536623.1| - 0.22 11.4 6.4 0.9 9.5 6.4 2.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Na_Ca_ex PF01699.24 gi|292656727|ref|YP_003536624.1| - 4.5e-06 26.7 5.2 5e-06 26.5 5.2 1.0 1 0 0 1 1 1 1 Sodium/calcium exchanger protein UCR_Fe-S_N PF10399.9 gi|292656727|ref|YP_003536624.1| - 7.6 6.0 7.9 0.38 10.2 2.1 1.9 2 1 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Na_Ca_ex PF01699.24 gi|292656728|ref|YP_003536625.1| - 2.1e-25 89.5 11.2 2.1e-25 89.5 11.2 1.9 2 0 0 2 2 2 1 Sodium/calcium exchanger protein DeoC PF01791.9 gi|292656729|ref|YP_003536626.1| - 2.1e-11 43.9 4.4 2.8e-11 43.5 4.4 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF63 PF01889.17 gi|292656730|ref|YP_003536627.1| - 2.4e-19 70.6 2.5 3.3e-19 70.1 2.5 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 PfkB PF00294.24 gi|292656731|ref|YP_003536628.1| - 3.9e-52 177.4 3.2 4.4e-52 177.3 3.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase GtrA PF04138.14 gi|292656732|ref|YP_003536629.1| - 0.028 14.7 4.0 0.081 13.2 3.8 1.8 1 1 0 1 1 1 0 GtrA-like protein PNP_UDP_1 PF01048.20 gi|292656733|ref|YP_003536630.1| - 1.9e-46 158.2 1.5 2.3e-46 157.9 1.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPP PF04982.13 gi|292656734|ref|YP_003536631.1| - 3.1e-13 50.0 5.1 3.1e-13 50.0 5.1 1.8 2 0 0 2 2 2 1 HPP family Usp PF00582.26 gi|292656734|ref|YP_003536631.1| - 9e-13 48.9 1.7 1.8e-08 35.0 0.2 3.1 2 1 0 2 2 2 2 Universal stress protein family TrkA_N PF02254.18 gi|292656735|ref|YP_003536632.1| - 1.1e-28 99.8 0.6 1.6e-28 99.3 0.6 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|292656735|ref|YP_003536632.1| - 1.1e-11 44.6 5.6 1.1e-11 44.6 5.6 2.5 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|292656735|ref|YP_003536632.1| - 3.4e-06 26.5 0.1 5.1e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 Ion transport protein NTP_transf_3 PF12804.7 gi|292656735|ref|YP_003536632.1| - 0.032 14.6 0.8 0.1 13.0 0.8 1.8 1 1 0 1 1 1 0 MobA-like NTP transferase domain Sacchrp_dh_NADP PF03435.18 gi|292656735|ref|YP_003536632.1| - 0.11 12.7 0.1 0.36 11.1 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain SLS PF14611.6 gi|292656735|ref|YP_003536632.1| - 0.18 11.6 0.1 0.25 11.1 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF3262 PF11660.8 gi|292656735|ref|YP_003536632.1| - 1.5 9.2 4.5 2.7 8.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3262) TrkA_C PF02080.21 gi|292656736|ref|YP_003536633.1| - 1.1e-12 47.6 0.2 7.7e-12 44.9 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain 5TM-5TMR_LYT PF07694.12 gi|292656736|ref|YP_003536633.1| - 1.5 8.3 6.8 2.6 7.5 6.8 1.3 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.21 gi|292656737|ref|YP_003536634.1| - 1.9e-06 27.6 0.4 6.1e-06 26.0 0.4 2.0 1 0 0 1 1 1 1 TrkA-C domain ABC2_membrane PF01061.24 gi|292656737|ref|YP_003536634.1| - 2 7.8 5.9 3.1 7.2 5.9 1.2 1 0 0 1 1 1 0 ABC-2 type transporter ThiS PF02597.20 gi|292656738|ref|YP_003536635.1| - 5e-14 52.7 0.1 5.6e-14 52.5 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|292656738|ref|YP_003536635.1| - 0.046 13.6 0.0 8.8 6.3 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin Rieske PF00355.26 gi|292656739|ref|YP_003536636.1| - 0.0024 17.8 0.1 0.0041 17.0 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain PEPcase PF00311.17 gi|292656740|ref|YP_003536637.1| - 1.9e-245 816.7 0.1 2.8e-245 816.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|292656740|ref|YP_003536637.1| - 0.0023 16.5 0.0 0.0057 15.2 0.0 1.6 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase DUF1690 PF07956.11 gi|292656740|ref|YP_003536637.1| - 0.13 12.7 6.5 2.9 8.3 0.8 3.3 3 0 0 3 3 3 0 Protein of Unknown function (DUF1690) Ca_chan_IQ PF08763.11 gi|292656740|ref|YP_003536637.1| - 0.14 12.4 0.1 0.59 10.4 0.1 2.1 1 0 0 1 1 1 0 Voltage gated calcium channel IQ domain EGL-1 PF11430.8 gi|292656740|ref|YP_003536637.1| - 0.24 11.3 0.9 0.45 10.4 0.9 1.4 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Aldo_ket_red PF00248.21 gi|292656741|ref|YP_003536638.1| - 2.3e-55 187.9 0.0 4.9e-53 180.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Mac PF12464.8 gi|292656742|ref|YP_003536639.1| - 2.8e-20 72.3 0.2 4.1e-20 71.8 0.2 1.2 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep_2 PF14602.6 gi|292656742|ref|YP_003536639.1| - 2.2e-15 56.1 5.9 1.1e-10 41.1 1.4 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|292656742|ref|YP_003536639.1| - 1.3e-12 46.9 10.6 4.7e-10 38.8 1.7 2.8 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) CTP_synth_N PF06418.14 gi|292656743|ref|YP_003536640.1| - 5.2e-123 409.5 0.1 7e-123 409.1 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|292656743|ref|YP_003536640.1| - 9.8e-56 188.5 0.0 1.6e-55 187.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|292656743|ref|YP_003536640.1| - 5.1e-07 29.7 0.0 2.4e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|292656743|ref|YP_003536640.1| - 0.0012 18.9 0.0 0.002 18.2 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GMP_synt_C PF00958.22 gi|292656744|ref|YP_003536641.1| - 4.7e-29 100.3 0.1 1.1e-28 99.1 0.1 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|292656744|ref|YP_003536641.1| - 4.3e-08 32.6 0.0 4.5e-05 22.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|292656744|ref|YP_003536641.1| - 4.2e-05 22.5 0.0 0.0017 17.2 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|292656744|ref|YP_003536641.1| - 0.0033 17.1 0.0 0.0074 15.9 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|292656744|ref|YP_003536641.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TmoB PF06234.12 gi|292656744|ref|YP_003536641.1| - 0.019 15.0 0.2 1.8 8.7 0.1 2.5 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) QueC PF06508.13 gi|292656744|ref|YP_003536641.1| - 0.036 13.5 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|292656744|ref|YP_003536641.1| - 0.051 12.9 0.0 0.078 12.2 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|292656744|ref|YP_003536641.1| - 0.087 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase TrkA_N PF02254.18 gi|292656745|ref|YP_003536642.1| - 6.6e-06 26.4 0.3 7.9e-06 26.1 0.3 1.2 1 0 0 1 1 1 1 TrkA-N domain DUF4397 PF14344.6 gi|292656746|ref|YP_003536643.1| - 2.7e-42 144.4 1.8 1.5e-33 116.2 1.3 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) TcfC PF16967.5 gi|292656746|ref|YP_003536643.1| - 0.00026 20.4 0.4 0.21 11.1 0.1 2.8 2 1 0 2 2 2 2 E-set like domain AlgF PF11182.8 gi|292656746|ref|YP_003536643.1| - 0.0015 18.3 0.2 0.14 12.0 0.0 2.2 1 1 1 2 2 2 2 Alginate O-acetyl transferase AlgF DUF5013 PF16405.5 gi|292656746|ref|YP_003536643.1| - 0.17 12.2 0.0 16 5.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5013) GHMP_kinases_C PF08544.13 gi|292656747|ref|YP_003536644.1| - 4.1e-06 27.1 0.0 1e-05 25.8 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|292656747|ref|YP_003536644.1| - 8.8e-06 25.9 0.3 2e-05 24.8 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain ATPase PF06745.13 gi|292656748|ref|YP_003536645.1| - 7.9e-09 35.2 0.0 0.00036 20.0 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|292656748|ref|YP_003536645.1| - 9e-05 22.1 0.6 0.0014 18.2 0.6 2.3 1 1 0 1 1 1 1 AAA domain T2SSF PF00482.23 gi|292656749|ref|YP_003536646.1| - 0.00025 21.0 0.9 0.00047 20.1 0.9 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F DUF1451 PF07295.11 gi|292656749|ref|YP_003536646.1| - 0.0054 16.8 2.9 0.011 15.8 2.9 1.6 1 1 0 1 1 1 1 Zinc-ribbon containing domain HypA PF01155.19 gi|292656749|ref|YP_003536646.1| - 0.0091 16.0 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1664 PF07889.12 gi|292656749|ref|YP_003536646.1| - 0.025 14.6 0.2 0.32 11.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) zf-C3HC4_3 PF13920.6 gi|292656749|ref|YP_003536646.1| - 0.03 14.2 0.7 0.046 13.6 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.12 gi|292656749|ref|YP_003536646.1| - 0.032 14.2 0.1 0.052 13.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|292656749|ref|YP_003536646.1| - 0.037 14.1 0.8 0.078 13.1 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Baculo_PEP_C PF04513.12 gi|292656749|ref|YP_003536646.1| - 0.038 14.0 0.3 0.86 9.6 0.2 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus zinc_ribbon_5 PF13719.6 gi|292656749|ref|YP_003536646.1| - 0.096 12.5 2.9 1.9 8.3 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|292656749|ref|YP_003536646.1| - 0.12 12.4 0.7 0.21 11.6 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon ATG16 PF08614.11 gi|292656749|ref|YP_003536646.1| - 0.12 12.6 6.2 0.22 11.7 6.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Zn_Tnp_IS91 PF14319.6 gi|292656749|ref|YP_003536646.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain MtrG PF04210.13 gi|292656749|ref|YP_003536646.1| - 0.24 11.3 0.4 3.9 7.4 0.0 2.6 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4407 PF14362.6 gi|292656749|ref|YP_003536646.1| - 0.32 10.3 4.0 0.58 9.4 4.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|292656749|ref|YP_003536646.1| - 0.32 11.3 1.3 2.8 8.3 0.3 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) CCDC-167 PF15188.6 gi|292656749|ref|YP_003536646.1| - 1.1 9.6 6.2 3.3 8.1 0.6 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Spc7 PF08317.11 gi|292656749|ref|YP_003536646.1| - 1.7 7.5 4.0 3.7 6.4 4.2 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein zinc_ribbon_4 PF13717.6 gi|292656749|ref|YP_003536646.1| - 1.8 8.6 4.4 19 5.3 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain FUSC PF04632.12 gi|292656749|ref|YP_003536646.1| - 1.9 6.9 6.0 2.9 6.3 6.0 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family CorA PF01544.18 gi|292656749|ref|YP_003536646.1| - 9.2 5.5 6.8 36 3.5 0.7 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.6 gi|292656749|ref|YP_003536646.1| - 9.8 6.7 11.2 1.5 9.3 2.8 2.8 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) TFIIS_C PF01096.18 gi|292656751|ref|YP_003536648.1| - 1.3e-16 60.1 3.8 1.3e-16 60.1 3.8 2.7 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|292656751|ref|YP_003536648.1| - 1.5e-05 24.8 10.1 0.0002 21.1 1.9 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|292656751|ref|YP_003536648.1| - 0.00054 19.8 10.8 0.043 13.7 1.2 2.9 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|292656751|ref|YP_003536648.1| - 0.0057 16.6 1.3 0.0057 16.6 1.3 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|292656751|ref|YP_003536648.1| - 0.041 13.6 8.7 0.56 9.9 0.1 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|292656751|ref|YP_003536648.1| - 0.14 12.2 10.8 0.53 10.4 0.8 2.9 2 1 0 2 2 2 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|292656751|ref|YP_003536648.1| - 0.18 12.0 4.5 8.7 6.6 0.1 3.4 3 0 0 3 3 3 0 C4-type zinc ribbon domain HypA PF01155.19 gi|292656751|ref|YP_003536648.1| - 0.22 11.6 8.0 0.12 12.4 0.7 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 gi|292656751|ref|YP_003536648.1| - 0.24 11.5 6.9 14 5.9 0.2 3.6 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Lar_restr_allev PF14354.6 gi|292656751|ref|YP_003536648.1| - 0.45 10.9 13.9 7.9 6.9 2.2 3.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|292656751|ref|YP_003536648.1| - 0.46 10.3 8.1 14 5.5 0.0 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|292656751|ref|YP_003536648.1| - 0.52 10.0 9.4 2.4 7.8 0.1 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|292656751|ref|YP_003536648.1| - 0.69 10.0 13.9 0.55 10.4 0.9 3.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|292656751|ref|YP_003536648.1| - 1.1 8.8 15.2 2.7 7.5 0.9 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|292656751|ref|YP_003536648.1| - 1.8 8.5 7.6 10 6.2 0.3 3.2 3 1 1 4 4 4 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|292656751|ref|YP_003536648.1| - 2.8 7.8 15.6 2.3 8.0 1.6 3.7 4 1 0 4 4 4 0 Rubredoxin metal binding domain zf-C4_Topoisom PF01396.19 gi|292656751|ref|YP_003536648.1| - 2.8 7.8 8.8 0.59 10.0 0.4 3.1 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.12 gi|292656751|ref|YP_003536648.1| - 3.2 7.8 9.7 5.4 7.1 0.8 2.6 2 1 0 2 2 2 0 zinc-ribbons YhfH PF14149.6 gi|292656751|ref|YP_003536648.1| - 5.9 6.9 12.2 24 5.0 3.1 3.6 3 1 0 3 3 3 0 YhfH-like protein Zn_Tnp_IS91 PF14319.6 gi|292656751|ref|YP_003536648.1| - 6.5 6.9 8.7 30 4.8 2.9 3.0 2 1 0 2 2 2 0 Transposase zinc-binding domain GFA PF04828.14 gi|292656751|ref|YP_003536648.1| - 7.6 6.9 9.9 5.4 7.4 0.6 3.0 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 gi|292656751|ref|YP_003536648.1| - 8.5 6.4 12.6 6.3 6.8 0.1 3.8 3 1 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|292656751|ref|YP_003536648.1| - 9.3 6.5 15.9 34 4.6 1.2 3.8 2 2 1 3 3 3 0 Zinc ribbon domain LMP PF04778.12 gi|292656752|ref|YP_003536649.1| - 0.0025 17.7 0.8 0.0025 17.7 0.8 1.7 2 0 0 2 2 2 1 LMP repeated region HisKA_7TM PF16927.5 gi|292656753|ref|YP_003536650.1| - 0.0085 16.2 0.8 0.0085 16.2 0.8 1.9 3 0 0 3 3 3 1 N-terminal 7TM region of histidine kinase DUF4179 PF13786.6 gi|292656753|ref|YP_003536650.1| - 0.14 12.6 0.7 6.2 7.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) DLH PF01738.18 gi|292656754|ref|YP_003536651.1| - 9.6e-07 28.6 0.1 1.3e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|292656754|ref|YP_003536651.1| - 6.1e-05 22.7 0.2 0.00051 19.7 0.1 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|292656754|ref|YP_003536651.1| - 0.0015 17.9 0.6 0.51 9.6 0.3 2.5 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|292656754|ref|YP_003536651.1| - 0.0088 16.7 17.1 0.29 11.7 10.2 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family FSH1 PF03959.13 gi|292656754|ref|YP_003536651.1| - 0.012 15.2 0.0 0.026 14.2 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|292656754|ref|YP_003536651.1| - 0.021 14.5 0.9 0.41 10.2 0.2 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|292656754|ref|YP_003536651.1| - 0.033 14.0 0.0 0.045 13.5 0.0 1.1 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase BAAT_C PF08840.11 gi|292656754|ref|YP_003536651.1| - 0.04 13.8 0.1 0.062 13.2 0.1 1.5 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF1100 PF06500.11 gi|292656754|ref|YP_003536651.1| - 0.047 12.5 0.0 0.063 12.1 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) Peptidase_S9 PF00326.21 gi|292656754|ref|YP_003536651.1| - 0.056 12.9 0.5 0.13 11.7 0.3 1.6 1 1 0 2 2 2 0 Prolyl oligopeptidase family Lipase_3 PF01764.25 gi|292656754|ref|YP_003536651.1| - 0.099 12.5 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) PspA_IM30 PF04012.12 gi|292656755|ref|YP_003536652.1| - 1.1e-28 100.3 41.5 6.3e-28 97.9 41.5 1.9 1 1 0 1 1 1 1 PspA/IM30 family ExsD PF16806.5 gi|292656755|ref|YP_003536652.1| - 0.0044 17.0 7.0 0.0064 16.5 7.0 1.3 1 0 0 1 1 1 1 Antiactivator protein ExsD DUF1664 PF07889.12 gi|292656755|ref|YP_003536652.1| - 0.0064 16.5 2.8 0.0064 16.5 2.8 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) MCPVI PF02993.14 gi|292656755|ref|YP_003536652.1| - 0.019 14.8 9.3 0.034 14.0 6.3 2.2 2 0 0 2 2 2 0 Minor capsid protein VI YabA PF06156.13 gi|292656755|ref|YP_003536652.1| - 0.032 14.9 22.6 0.17 12.5 5.8 3.3 1 1 2 3 3 3 0 Initiation control protein YabA Spc7 PF08317.11 gi|292656755|ref|YP_003536652.1| - 0.038 12.9 34.4 0.0097 14.8 26.6 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF3450 PF11932.8 gi|292656755|ref|YP_003536652.1| - 0.071 12.4 31.0 0.1 11.9 11.5 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) MamL-1 PF09596.10 gi|292656755|ref|YP_003536652.1| - 0.086 13.1 0.0 0.086 13.1 0.0 2.7 2 0 0 2 2 2 0 MamL-1 domain ERM PF00769.19 gi|292656755|ref|YP_003536652.1| - 0.13 12.0 40.1 0.26 11.1 40.0 1.6 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Flagellin_C PF00700.21 gi|292656755|ref|YP_003536652.1| - 0.14 12.5 0.1 0.14 12.5 0.1 4.1 2 1 2 5 5 4 0 Bacterial flagellin C-terminal helical region MerR-DNA-bind PF09278.11 gi|292656755|ref|YP_003536652.1| - 0.24 12.0 19.2 7.2 7.2 6.6 4.6 3 1 1 4 4 4 0 MerR, DNA binding Prominin PF05478.11 gi|292656755|ref|YP_003536652.1| - 0.51 8.2 8.9 0.72 7.7 8.9 1.2 1 0 0 1 1 1 0 Prominin FapA PF03961.13 gi|292656755|ref|YP_003536652.1| - 0.52 8.8 22.6 0.36 9.4 16.6 2.4 1 1 1 2 2 2 0 Flagellar Assembly Protein A FOXP-CC PF16159.5 gi|292656755|ref|YP_003536652.1| - 0.88 10.2 9.2 18 6.1 0.2 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain Snf7 PF03357.21 gi|292656755|ref|YP_003536652.1| - 0.89 9.1 47.3 0.079 12.5 17.9 3.8 1 1 2 3 3 3 0 Snf7 YlqD PF11068.8 gi|292656755|ref|YP_003536652.1| - 1.4 9.3 30.8 0.37 11.2 15.8 3.2 2 1 1 3 3 3 0 YlqD protein COG6 PF06419.11 gi|292656755|ref|YP_003536652.1| - 1.8 6.6 18.6 0.052 11.8 1.2 2.6 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 SlyX PF04102.12 gi|292656755|ref|YP_003536652.1| - 2.2 9.0 24.2 0.19 12.4 6.2 3.7 2 1 1 3 3 3 0 SlyX FTA4 PF13093.6 gi|292656755|ref|YP_003536652.1| - 2.3 8.1 23.8 0.27 11.1 4.7 2.9 1 1 2 3 3 3 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 STAT_alpha PF01017.20 gi|292656755|ref|YP_003536652.1| - 3.2 7.6 20.6 4.7 7.1 6.6 2.5 1 1 1 2 2 2 0 STAT protein, all-alpha domain KASH_CCD PF14662.6 gi|292656755|ref|YP_003536652.1| - 3.3 7.5 37.9 0.085 12.7 26.5 3.1 2 1 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH DUF2894 PF11445.8 gi|292656755|ref|YP_003536652.1| - 3.4 8.1 16.2 9 6.7 11.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2894) TMPIT PF07851.13 gi|292656755|ref|YP_003536652.1| - 3.8 6.7 21.3 0.16 11.2 5.8 2.2 1 1 1 2 2 2 0 TMPIT-like protein Jnk-SapK_ap_N PF09744.9 gi|292656755|ref|YP_003536652.1| - 5.4 7.2 35.4 0.97 9.6 26.2 2.7 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 RmuC PF02646.16 gi|292656755|ref|YP_003536652.1| - 5.8 5.9 25.3 0.69 9.0 0.2 3.7 1 1 2 4 4 4 0 RmuC family ApoO PF09769.9 gi|292656755|ref|YP_003536652.1| - 8.5 6.4 8.2 22 5.0 3.6 2.9 1 1 2 3 3 3 0 Apolipoprotein O DivIC PF04977.15 gi|292656755|ref|YP_003536652.1| - 8.9 6.2 30.4 0.67 9.8 6.9 4.2 3 1 1 4 4 4 0 Septum formation initiator MR_MLE_C PF13378.6 gi|292656757|ref|YP_003536654.1| - 1.9e-39 135.5 1.9 3.2e-39 134.8 1.9 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|292656757|ref|YP_003536654.1| - 6.7e-15 55.3 0.2 1.3e-14 54.4 0.2 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|292656757|ref|YP_003536654.1| - 0.017 14.3 0.0 0.033 13.3 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DHO_dh PF01180.21 gi|292656757|ref|YP_003536654.1| - 0.027 13.7 0.0 0.05 12.8 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Enolase_C PF00113.22 gi|292656757|ref|YP_003536654.1| - 0.036 13.3 0.0 0.068 12.4 0.0 1.4 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|292656757|ref|YP_003536654.1| - 0.047 13.9 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 Enolase, N-terminal domain DUF1611 PF07755.11 gi|292656758|ref|YP_003536655.1| - 1.8e-74 249.4 0.4 2.4e-74 249.0 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|292656758|ref|YP_003536655.1| - 2.7e-27 94.8 0.0 1.2e-26 92.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain AAA_26 PF13500.6 gi|292656758|ref|YP_003536655.1| - 0.0047 16.8 0.1 2.1 8.1 0.0 2.3 1 1 0 2 2 2 2 AAA domain GFO_IDH_MocA PF01408.22 gi|292656758|ref|YP_003536655.1| - 0.0059 17.4 0.0 0.027 15.3 0.0 2.1 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold PK_C PF02887.16 gi|292656758|ref|YP_003536655.1| - 0.11 12.7 0.0 1.6 8.9 0.0 2.7 1 1 1 2 2 2 0 Pyruvate kinase, alpha/beta domain acVLRF1 PF18859.1 gi|292656759|ref|YP_003536656.1| - 4.6e-31 107.8 1.5 4.6e-31 107.8 1.5 2.2 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|292656759|ref|YP_003536656.1| - 5.5e-07 29.9 0.2 5.5e-07 29.9 0.2 2.2 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|292656759|ref|YP_003536656.1| - 0.0046 17.3 0.0 0.0097 16.2 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 DivIC PF04977.15 gi|292656759|ref|YP_003536656.1| - 0.0094 15.7 7.3 0.06 13.1 2.1 2.4 1 1 1 2 2 2 1 Septum formation initiator CLZ PF16526.5 gi|292656759|ref|YP_003536656.1| - 0.014 15.8 5.1 0.043 14.2 1.6 2.6 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PilJ PF13675.6 gi|292656759|ref|YP_003536656.1| - 0.023 14.7 1.6 0.06 13.4 1.6 1.7 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Tropomyosin PF00261.20 gi|292656759|ref|YP_003536656.1| - 0.024 14.0 6.2 0.037 13.4 6.2 1.3 1 0 0 1 1 1 0 Tropomyosin KASH_CCD PF14662.6 gi|292656759|ref|YP_003536656.1| - 0.042 13.7 1.1 0.063 13.1 1.1 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH WD40_alt PF14077.6 gi|292656759|ref|YP_003536656.1| - 0.056 13.3 1.7 2.3 8.2 0.1 2.5 2 0 0 2 2 2 0 Alternative WD40 repeat motif TSC22 PF01166.18 gi|292656759|ref|YP_003536656.1| - 0.092 13.1 1.6 2 8.8 0.2 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family ATG16 PF08614.11 gi|292656759|ref|YP_003536656.1| - 0.097 12.9 5.3 0.17 12.1 5.3 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Jnk-SapK_ap_N PF09744.9 gi|292656759|ref|YP_003536656.1| - 0.1 12.8 5.2 0.21 11.8 5.2 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 EzrA PF06160.12 gi|292656759|ref|YP_003536656.1| - 0.13 10.4 0.3 0.21 9.7 0.3 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|292656759|ref|YP_003536656.1| - 0.24 11.4 4.3 0.58 10.2 4.3 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 gi|292656759|ref|YP_003536656.1| - 0.28 11.7 9.3 2.2 8.8 3.0 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) ABC_tran_CTD PF16326.5 gi|292656759|ref|YP_003536656.1| - 0.47 10.7 9.4 1.5 9.1 9.2 2.0 1 1 1 2 2 2 0 ABC transporter C-terminal domain Pox_A_type_inc PF04508.12 gi|292656759|ref|YP_003536656.1| - 0.69 9.9 3.7 4.9 7.2 0.9 2.6 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Troponin PF00992.20 gi|292656759|ref|YP_003536656.1| - 0.72 10.2 4.8 1.3 9.3 4.8 1.3 1 0 0 1 1 1 0 Troponin DUF4164 PF13747.6 gi|292656759|ref|YP_003536656.1| - 2.5 8.4 19.6 4.9 7.5 8.8 3.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) CorA PF01544.18 gi|292656759|ref|YP_003536656.1| - 4 6.7 5.6 4.7 6.4 4.7 1.4 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein XhlA PF10779.9 gi|292656759|ref|YP_003536656.1| - 9.2 6.6 5.7 5 7.4 0.8 2.7 2 1 1 3 3 3 0 Haemolysin XhlA ADH_zinc_N PF00107.26 gi|292656762|ref|YP_003536659.1| - 3.5e-37 127.3 0.2 7.3e-37 126.3 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|292656762|ref|YP_003536659.1| - 7.7e-23 82.0 0.0 1.4e-22 81.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|292656762|ref|YP_003536659.1| - 1.6e-18 66.5 0.0 6.2e-18 64.7 0.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|292656762|ref|YP_003536659.1| - 3.1e-05 23.4 0.1 5.4e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|292656762|ref|YP_003536659.1| - 0.00025 20.6 0.2 0.00038 20.0 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|292656762|ref|YP_003536659.1| - 0.0062 16.6 0.5 0.015 15.4 0.5 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.8 gi|292656762|ref|YP_003536659.1| - 0.14 11.9 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ACP_syn_III_C PF08541.10 gi|292656762|ref|YP_003536659.1| - 0.62 10.3 4.5 0.39 10.9 0.2 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TrmB PF01978.19 gi|292656763|ref|YP_003536660.1| - 9.8e-06 25.4 0.0 4.6e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292656763|ref|YP_003536660.1| - 0.00075 19.3 0.5 0.0022 17.8 0.5 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292656763|ref|YP_003536660.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|292656763|ref|YP_003536660.1| - 0.0023 17.9 0.1 0.0048 16.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|292656763|ref|YP_003536660.1| - 0.0063 16.5 3.2 0.016 15.2 1.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|292656763|ref|YP_003536660.1| - 0.025 14.2 0.1 0.054 13.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|292656763|ref|YP_003536660.1| - 0.031 14.1 0.2 0.063 13.1 0.2 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|292656763|ref|YP_003536660.1| - 0.046 13.7 0.0 0.099 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|292656763|ref|YP_003536660.1| - 0.084 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MoCF_biosynth PF00994.24 gi|292656764|ref|YP_003536661.1| - 2.3e-30 105.1 0.6 2.9e-30 104.8 0.6 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain SBP_bac_5 PF00496.22 gi|292656764|ref|YP_003536661.1| - 0.13 11.2 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle ILVD_EDD PF00920.21 gi|292656765|ref|YP_003536662.1| - 8.7e-204 677.9 0.8 9.9e-204 677.7 0.8 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|292656765|ref|YP_003536662.1| - 0.025 14.7 0.4 2 8.6 0.0 2.4 2 0 0 2 2 2 0 DGC domain 2-Hacid_dh_C PF02826.19 gi|292656767|ref|YP_003536664.1| - 1.3e-51 174.5 0.0 1.8e-51 174.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|292656767|ref|YP_003536664.1| - 1.3e-10 41.1 0.0 1.6e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|292656767|ref|YP_003536664.1| - 0.00068 19.8 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|292656767|ref|YP_003536664.1| - 0.0075 16.8 0.0 0.02 15.5 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|292656767|ref|YP_003536664.1| - 0.023 14.2 0.0 0.22 11.1 0.0 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|292656767|ref|YP_003536664.1| - 0.059 12.7 0.1 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 ThiF family DUF4440 PF14534.6 gi|292656767|ref|YP_003536664.1| - 0.064 13.7 0.1 0.31 11.5 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) NAD_binding_7 PF13241.6 gi|292656767|ref|YP_003536664.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|292656767|ref|YP_003536664.1| - 0.15 12.4 0.2 4.2 7.7 0.1 2.9 3 1 0 3 3 3 0 TrkA-N domain DAO PF01266.24 gi|292656769|ref|YP_003536666.1| - 2.4e-09 37.2 11.0 8.3e-06 25.6 0.7 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|292656769|ref|YP_003536666.1| - 5.3e-08 32.5 1.3 0.00012 21.5 0.3 2.3 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|292656769|ref|YP_003536666.1| - 1.2e-07 30.9 0.9 5e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|292656769|ref|YP_003536666.1| - 7e-07 28.8 2.8 0.00017 20.9 1.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|292656769|ref|YP_003536666.1| - 2.5e-06 27.1 0.1 4.3e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292656769|ref|YP_003536666.1| - 1.5e-05 23.9 2.6 0.0011 17.8 2.9 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|292656769|ref|YP_003536666.1| - 2.8e-05 23.4 4.2 5.2e-05 22.5 4.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|292656769|ref|YP_003536666.1| - 0.00031 20.1 1.7 0.00053 19.3 1.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|292656769|ref|YP_003536666.1| - 0.00032 20.9 1.7 0.002 18.3 0.3 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|292656769|ref|YP_003536666.1| - 0.00044 19.4 2.0 0.003 16.7 2.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|292656769|ref|YP_003536666.1| - 0.0025 16.9 2.6 0.12 11.4 1.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|292656769|ref|YP_003536666.1| - 0.0033 17.4 3.7 0.16 11.9 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|292656769|ref|YP_003536666.1| - 0.017 14.4 1.8 0.029 13.7 1.8 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|292656769|ref|YP_003536666.1| - 0.032 13.5 0.3 0.064 12.5 0.3 1.5 1 0 0 1 1 1 0 Thi4 family Polysacc_synt_3 PF13440.6 gi|292656771|ref|YP_003536668.1| - 4.6e-13 49.0 5.8 8e-13 48.2 5.8 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|292656771|ref|YP_003536668.1| - 5.9e-11 42.3 7.4 5.9e-11 42.3 7.4 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|292656771|ref|YP_003536668.1| - 8.9e-11 42.0 17.7 8.9e-11 42.0 17.7 4.3 2 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Tom7 PF08038.12 gi|292656771|ref|YP_003536668.1| - 5.2 6.8 5.4 2 8.2 2.0 2.0 2 0 0 2 2 2 0 TOM7 family Cytochrom_B_N_2 PF13631.6 gi|292656773|ref|YP_003536670.1| - 4.5e-44 150.4 6.7 4.5e-44 150.4 4.2 2.2 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|292656773|ref|YP_003536670.1| - 6e-26 91.4 12.3 6e-26 91.4 12.3 3.2 3 1 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|292656773|ref|YP_003536670.1| - 3.7e-07 30.4 0.9 3.7e-07 30.4 0.9 2.9 3 1 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD DUF4813 PF16072.5 gi|292656773|ref|YP_003536670.1| - 0.023 14.3 0.7 0.037 13.7 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4813) Rieske PF00355.26 gi|292656774|ref|YP_003536671.1| - 3.1e-12 46.3 0.0 4.2e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Claudin_2 PF13903.6 gi|292656775|ref|YP_003536672.1| - 0.42 10.3 5.4 0.58 9.9 0.2 2.5 2 1 1 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction Copper-bind PF00127.20 gi|292656776|ref|YP_003536673.1| - 2.4e-13 50.3 0.0 3.6e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Nramp PF01566.18 gi|292656777|ref|YP_003536674.1| - 3.1e-63 213.9 34.9 3.1e-63 213.9 34.9 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein PAS_4 PF08448.10 gi|292656778|ref|YP_003536675.1| - 2e-23 82.7 6.5 1.4e-13 51.1 0.1 3.2 4 0 0 4 4 3 2 PAS fold PAS_9 PF13426.7 gi|292656778|ref|YP_003536675.1| - 1.5e-20 73.4 0.0 6.4e-10 39.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|292656778|ref|YP_003536675.1| - 5.4e-19 68.8 0.0 3.6e-18 66.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|292656778|ref|YP_003536675.1| - 1.1e-18 67.2 0.1 6.1e-12 45.5 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|292656778|ref|YP_003536675.1| - 1.2e-13 50.7 0.3 9.6e-09 35.1 0.1 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|292656778|ref|YP_003536675.1| - 1.5e-08 34.6 0.1 8.2e-08 32.3 0.1 2.2 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|292656778|ref|YP_003536675.1| - 6e-06 26.2 0.3 6e-06 26.2 0.3 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|292656778|ref|YP_003536675.1| - 2.2e-05 24.3 0.0 4.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.12 gi|292656778|ref|YP_003536675.1| - 2.3e-05 24.6 0.0 0.38 11.1 0.0 3.0 2 1 0 2 2 2 2 PAS fold HisKA_4TM PF16926.5 gi|292656778|ref|YP_003536675.1| - 5.1e-05 22.9 0.1 0.00013 21.6 0.1 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase Response_reg PF00072.24 gi|292656778|ref|YP_003536675.1| - 0.0002 21.5 0.0 0.00082 19.5 0.0 2.0 2 0 0 2 2 1 1 Response regulator receiver domain Haem_degrading PF03928.14 gi|292656778|ref|YP_003536675.1| - 0.002 18.2 0.2 3.1 7.9 0.0 3.2 3 0 0 3 3 3 2 Haem-degrading SPOB_a PF14689.6 gi|292656778|ref|YP_003536675.1| - 0.0032 17.1 0.6 0.01 15.5 0.6 2.0 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|292656778|ref|YP_003536675.1| - 0.0051 17.0 3.5 0.22 11.7 0.2 4.3 3 2 0 3 3 3 1 PAS fold ATG16 PF08614.11 gi|292656778|ref|YP_003536675.1| - 0.76 10.0 6.5 0.48 10.6 0.8 2.4 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Tautomerase PF01361.21 gi|292656779|ref|YP_003536676.1| - 1.3e-07 31.4 0.2 3.1e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|292656779|ref|YP_003536676.1| - 1.7e-05 24.8 0.1 3.4e-05 23.8 0.1 1.6 1 1 0 1 1 1 1 Tautomerase enzyme MIF PF01187.18 gi|292656779|ref|YP_003536676.1| - 0.0047 17.2 0.0 0.0056 17.0 0.0 1.0 1 0 0 1 1 1 1 Macrophage migration inhibitory factor (MIF) Aminotran_5 PF00266.19 gi|292656780|ref|YP_003536677.1| - 4.9e-30 104.7 0.0 5.7e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|292656780|ref|YP_003536677.1| - 0.0096 15.1 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Glyoxalase PF00903.25 gi|292656781|ref|YP_003536678.1| - 1.8e-23 83.1 0.0 4.1e-23 82.0 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|292656781|ref|YP_003536678.1| - 1.2e-06 28.8 0.0 0.19 12.0 0.0 3.2 3 0 0 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Aldo_ket_red PF00248.21 gi|292656782|ref|YP_003536679.1| - 1.4e-23 83.5 0.0 1.9e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.12 gi|292656783|ref|YP_003536680.1| - 1.2e-12 48.3 0.0 1.9e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292656783|ref|YP_003536680.1| - 5.6e-11 43.0 0.0 1.4e-10 41.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292656783|ref|YP_003536680.1| - 0.0023 17.8 0.0 0.0044 16.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292656783|ref|YP_003536680.1| - 0.0084 16.8 0.0 0.013 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292656783|ref|YP_003536680.1| - 0.027 13.8 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|292656783|ref|YP_003536680.1| - 0.038 15.0 0.3 0.1 13.6 0.2 1.8 2 1 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.20 gi|292656783|ref|YP_003536680.1| - 0.2 10.7 0.0 0.26 10.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HpcH_HpaI PF03328.14 gi|292656784|ref|YP_003536681.1| - 5.4e-32 110.7 0.0 7.7e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Phos_pyr_kin PF08543.12 gi|292656785|ref|YP_003536682.1| - 5.5e-85 284.7 2.1 6.3e-85 284.5 2.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|292656785|ref|YP_003536682.1| - 1.9e-11 43.8 2.5 2.8e-11 43.3 2.5 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|292656785|ref|YP_003536682.1| - 0.0032 17.0 0.2 0.0045 16.5 0.2 1.3 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|292656785|ref|YP_003536682.1| - 0.0059 16.0 2.2 0.061 12.7 1.9 2.1 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family HK PF02110.15 gi|292656786|ref|YP_003536683.1| - 3.2e-64 216.7 4.3 3.7e-64 216.5 4.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|292656786|ref|YP_003536683.1| - 5e-05 22.8 0.1 7.3e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|292656786|ref|YP_003536683.1| - 0.0017 17.9 1.1 0.0017 17.9 1.1 1.6 2 0 0 2 2 2 1 Carbohydrate kinase TMP-TENI PF02581.17 gi|292656787|ref|YP_003536684.1| - 2.3e-61 206.3 3.8 2.7e-61 206.1 3.8 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|292656787|ref|YP_003536684.1| - 8.4e-06 25.4 9.6 1.1e-05 25.1 9.6 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|292656787|ref|YP_003536684.1| - 4.5e-05 22.9 5.2 4.5e-05 22.9 5.2 2.1 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|292656787|ref|YP_003536684.1| - 0.00044 19.5 0.3 0.0017 17.5 0.0 1.8 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|292656787|ref|YP_003536684.1| - 0.00097 18.4 0.7 0.0015 17.7 0.7 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Flavodoxin_5 PF12724.7 gi|292656788|ref|YP_003536685.1| - 9.8e-36 123.1 0.0 1.2e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|292656788|ref|YP_003536685.1| - 5e-05 23.5 0.6 9.5e-05 22.6 0.4 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|292656788|ref|YP_003536685.1| - 0.004 16.9 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FAD-oxidase_C PF02913.19 gi|292656789|ref|YP_003536686.1| - 3.1e-57 194.1 0.2 6.4e-57 193.1 0.2 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|292656789|ref|YP_003536686.1| - 5.9e-41 139.5 0.3 1.8e-40 137.9 0.3 1.9 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|292656789|ref|YP_003536686.1| - 2.9e-10 40.4 6.1 6.5e-10 39.3 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|292656789|ref|YP_003536686.1| - 7.8e-10 39.2 5.4 1.5e-09 38.3 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|292656789|ref|YP_003536686.1| - 5.1e-07 29.8 0.3 9.1e-05 22.6 0.0 3.3 4 0 0 4 4 3 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|292656789|ref|YP_003536686.1| - 3.2e-05 23.9 3.7 0.025 14.7 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|292656789|ref|YP_003536686.1| - 8.2e-05 23.1 5.8 0.00018 22.0 5.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292656789|ref|YP_003536686.1| - 0.00072 19.7 6.0 0.0018 18.4 6.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|292656789|ref|YP_003536686.1| - 0.01 15.9 3.6 0.095 12.8 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|292656789|ref|YP_003536686.1| - 0.017 15.2 11.5 0.79 10.0 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|292656789|ref|YP_003536686.1| - 0.019 14.8 12.5 0.22 11.4 4.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|292656789|ref|YP_003536686.1| - 0.038 14.9 4.8 0.075 14.0 4.8 1.5 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|292656789|ref|YP_003536686.1| - 0.086 13.0 0.3 0.18 12.0 0.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|292656789|ref|YP_003536686.1| - 0.39 11.3 12.7 0.56 10.8 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|292656789|ref|YP_003536686.1| - 0.45 10.7 12.2 1.4 9.1 3.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Aminotran_5 PF00266.19 gi|292656790|ref|YP_003536687.1| - 3.2e-33 115.2 0.0 3.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|292656790|ref|YP_003536687.1| - 2.3e-05 23.1 0.0 3.4e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|292656790|ref|YP_003536687.1| - 0.067 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Nramp PF01566.18 gi|292656793|ref|YP_003536690.1| - 3.6e-112 374.9 27.0 4.4e-112 374.6 27.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein TPPK_C PF12555.8 gi|292656793|ref|YP_003536690.1| - 0.0057 16.7 0.0 0.0057 16.7 0.0 5.8 7 0 0 7 7 7 1 Thiamine pyrophosphokinase C terminal UL42 PF17638.2 gi|292656793|ref|YP_003536690.1| - 1.2 9.1 3.7 5 7.1 0.1 2.8 3 0 0 3 3 3 0 HCMV UL42 Histidinol_dh PF00815.20 gi|292656794|ref|YP_003536691.1| - 6.7e-155 516.1 7.5 8.1e-155 515.8 7.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Fe-S_biosyn PF01521.20 gi|292656795|ref|YP_003536692.1| - 5.1e-21 75.0 0.0 5.7e-21 74.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis DNA_RNApol_7kD PF03604.13 gi|292656796|ref|YP_003536693.1| - 0.0054 16.4 0.8 0.0087 15.7 0.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit TackOD1 PF18551.1 gi|292656796|ref|YP_003536693.1| - 0.0097 15.6 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Nudix_N_2 PF14803.6 gi|292656796|ref|YP_003536693.1| - 0.012 15.5 0.1 5.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|292656796|ref|YP_003536693.1| - 0.02 15.0 0.2 0.037 14.1 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|292656796|ref|YP_003536693.1| - 0.097 12.6 2.6 0.17 11.8 1.4 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_6 PF14599.6 gi|292656796|ref|YP_003536693.1| - 0.14 12.2 4.0 2.9 8.0 0.3 2.3 1 1 1 2 2 2 0 Zinc-ribbon Rubredoxin_2 PF18073.1 gi|292656796|ref|YP_003536693.1| - 7.8 6.3 8.9 10 5.9 0.9 2.6 3 0 0 3 3 3 0 Rubredoxin metal binding domain 5TM-5TMR_LYT PF07694.12 gi|292656798|ref|YP_003536695.1| - 1.3 8.5 17.4 0.24 10.9 4.5 2.9 2 1 1 3 3 3 0 5TMR of 5TMR-LYT DUF2678 PF10856.8 gi|292656798|ref|YP_003536695.1| - 3.3 7.7 6.1 21 5.0 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) DUF2238 PF09997.9 gi|292656799|ref|YP_003536696.1| - 0.00037 20.3 2.1 0.0008 19.2 2.1 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) MarR_2 PF12802.7 gi|292656800|ref|YP_003536697.1| - 6e-07 29.2 0.7 1.3e-06 28.2 0.7 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|292656800|ref|YP_003536697.1| - 1.1e-05 25.2 1.4 1.3e-05 24.9 0.5 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292656800|ref|YP_003536697.1| - 8.6e-05 22.4 0.9 0.00014 21.7 0.9 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|292656800|ref|YP_003536697.1| - 9.3e-05 22.4 1.2 0.00019 21.4 0.6 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|292656800|ref|YP_003536697.1| - 0.00044 20.2 0.0 0.00072 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|292656800|ref|YP_003536697.1| - 0.00044 20.1 0.1 0.00084 19.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|292656800|ref|YP_003536697.1| - 0.0009 18.8 1.1 0.0016 18.0 1.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|292656800|ref|YP_003536697.1| - 0.0011 18.7 0.9 0.0022 17.7 0.9 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|292656800|ref|YP_003536697.1| - 0.0045 17.0 0.2 0.0091 16.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HemN_C PF06969.16 gi|292656800|ref|YP_003536697.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain MarR PF01047.22 gi|292656800|ref|YP_003536697.1| - 0.011 15.7 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|292656800|ref|YP_003536697.1| - 0.014 15.2 0.2 0.027 14.3 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_DeoR PF08220.12 gi|292656800|ref|YP_003536697.1| - 0.014 15.2 0.5 0.024 14.4 0.5 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4423 PF14394.6 gi|292656800|ref|YP_003536697.1| - 0.037 13.8 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF1724 PF08350.10 gi|292656800|ref|YP_003536697.1| - 0.048 13.8 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) D-ser_dehydrat PF14031.6 gi|292656800|ref|YP_003536697.1| - 0.073 13.7 0.0 0.34 11.6 0.0 2.1 3 0 0 3 3 2 0 Putative serine dehydratase domain Fe_dep_repress PF01325.19 gi|292656800|ref|YP_003536697.1| - 0.078 13.2 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|292656800|ref|YP_003536697.1| - 0.096 12.7 0.4 0.21 11.6 0.4 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|292656800|ref|YP_003536697.1| - 0.12 12.9 0.1 0.23 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dodecin PF07311.12 gi|292656801|ref|YP_003536698.1| - 4e-21 75.0 1.0 4.4e-21 74.9 1.0 1.0 1 0 0 1 1 1 1 Dodecin 5_nucleotid_C PF02872.18 gi|292656802|ref|YP_003536699.1| - 3.1e-28 99.0 0.0 4.9e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|292656802|ref|YP_003536699.1| - 4.8e-06 27.2 0.0 7.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Usp PF00582.26 gi|292656803|ref|YP_003536700.1| - 1.7e-10 41.5 2.0 1.2e-08 35.6 2.0 2.1 1 1 0 1 1 1 1 Universal stress protein family MS_channel PF00924.18 gi|292656804|ref|YP_003536701.1| - 1.4e-30 106.4 0.2 2e-30 105.9 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel PAC2 PF09754.9 gi|292656805|ref|YP_003536702.1| - 3.2e-06 27.3 0.0 3.7e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 PAC2 family PAC2 PF09754.9 gi|292656806|ref|YP_003536703.1| - 1.2e-18 67.9 0.0 1.3e-18 67.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Regulator_TrmB PF11495.8 gi|292656807|ref|YP_003536704.1| - 1.5e-74 250.1 0.5 2.6e-74 249.3 0.5 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|292656807|ref|YP_003536704.1| - 3.1e-21 75.0 0.0 6.5e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292656807|ref|YP_003536704.1| - 6.7e-07 29.1 0.1 1.9e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292656807|ref|YP_003536704.1| - 4.1e-06 26.8 0.1 1.5e-05 25.0 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|292656807|ref|YP_003536704.1| - 8.8e-05 22.2 0.1 0.00022 20.9 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|292656807|ref|YP_003536704.1| - 0.00047 19.7 0.0 0.0029 17.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|292656807|ref|YP_003536704.1| - 0.0022 17.5 0.0 0.0068 15.9 0.0 1.8 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|292656807|ref|YP_003536704.1| - 0.0029 17.9 0.0 0.0067 16.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator GCR1_C PF12550.8 gi|292656807|ref|YP_003536704.1| - 0.0092 16.3 0.0 0.029 14.7 0.0 1.8 2 0 0 2 2 2 1 Transcriptional activator of glycolytic enzymes HTH_5 PF01022.20 gi|292656807|ref|YP_003536704.1| - 0.014 15.3 0.0 0.045 13.6 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|292656807|ref|YP_003536704.1| - 0.028 14.4 0.3 24 5.0 0.0 3.3 3 0 0 3 3 3 0 HTH domain HTH_9 PF08221.11 gi|292656807|ref|YP_003536704.1| - 0.038 14.1 0.0 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292656807|ref|YP_003536704.1| - 0.043 13.8 0.0 0.092 12.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|292656807|ref|YP_003536704.1| - 0.047 13.2 0.2 1.5 8.4 0.0 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|292656807|ref|YP_003536704.1| - 0.054 13.4 0.1 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|292656807|ref|YP_003536704.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|292656807|ref|YP_003536704.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TF_Zn_Ribbon PF08271.12 gi|292656808|ref|YP_003536705.1| - 0.029 13.9 10.3 1.6 8.3 0.3 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|292656808|ref|YP_003536705.1| - 0.58 10.1 5.8 10 6.1 1.1 2.6 1 1 1 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|292656808|ref|YP_003536705.1| - 2.2 8.7 5.3 7.1 7.1 5.3 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|292656808|ref|YP_003536705.1| - 6.5 6.9 6.8 23 5.2 0.3 2.6 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 GFO_IDH_MocA PF01408.22 gi|292656809|ref|YP_003536706.1| - 3.2e-26 92.5 0.0 5.6e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|292656809|ref|YP_003536706.1| - 1.9e-08 34.3 1.2 9.3e-08 32.1 0.0 2.4 2 1 1 3 3 3 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|292656809|ref|YP_003536706.1| - 8.1e-07 28.6 0.0 2e-06 27.3 0.0 1.6 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|292656809|ref|YP_003536706.1| - 4.8e-06 27.1 0.0 1.2e-05 25.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|292656809|ref|YP_003536706.1| - 2.3e-05 24.0 0.0 4.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|292656809|ref|YP_003536706.1| - 0.00013 22.1 0.0 0.00032 20.9 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.19 gi|292656809|ref|YP_003536706.1| - 0.00027 21.6 0.0 0.00058 20.5 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|292656809|ref|YP_003536706.1| - 0.048 14.1 0.2 0.13 12.7 0.2 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain HIGH_NTase1 PF05636.11 gi|292656809|ref|YP_003536706.1| - 0.2 10.8 0.2 0.29 10.3 0.2 1.1 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase ABC_tran PF00005.27 gi|292656811|ref|YP_003536708.1| - 1.5e-31 109.8 0.0 2.6e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|292656811|ref|YP_003536708.1| - 4.7e-12 46.5 0.1 1.6e-11 44.9 0.1 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|292656811|ref|YP_003536708.1| - 7.2e-07 29.3 0.0 0.0053 16.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656811|ref|YP_003536708.1| - 1.5e-06 27.8 0.1 9.7e-06 25.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292656811|ref|YP_003536708.1| - 0.00013 21.8 0.0 0.021 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|292656811|ref|YP_003536708.1| - 0.00054 20.5 0.1 0.003 18.1 0.1 2.4 2 0 0 2 2 1 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|292656811|ref|YP_003536708.1| - 0.00074 19.6 0.2 0.019 15.1 0.2 2.6 1 1 0 1 1 1 1 TOBE domain Rad17 PF03215.15 gi|292656811|ref|YP_003536708.1| - 0.0013 18.7 0.0 0.0018 18.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|292656811|ref|YP_003536708.1| - 0.0025 17.6 0.0 0.54 9.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|292656811|ref|YP_003536708.1| - 0.0032 17.2 0.1 0.01 15.6 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|292656811|ref|YP_003536708.1| - 0.0039 17.5 0.2 0.014 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|292656811|ref|YP_003536708.1| - 0.013 15.9 0.1 0.042 14.2 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|292656811|ref|YP_003536708.1| - 0.013 15.9 0.8 0.082 13.3 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|292656811|ref|YP_003536708.1| - 0.016 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|292656811|ref|YP_003536708.1| - 0.019 14.9 0.1 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|292656811|ref|YP_003536708.1| - 0.027 15.0 0.0 0.041 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|292656811|ref|YP_003536708.1| - 0.04 14.3 0.0 0.098 13.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|292656811|ref|YP_003536708.1| - 0.07 12.7 0.0 0.27 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|292656811|ref|YP_003536708.1| - 0.11 12.8 0.5 0.32 11.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|292656811|ref|YP_003536708.1| - 0.29 11.7 1.9 0.7 10.4 0.2 2.3 3 1 0 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|292656812|ref|YP_003536709.1| - 6.2e-10 39.1 19.8 6.2e-10 39.1 19.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|292656813|ref|YP_003536710.1| - 3.5e-17 62.7 18.8 3.5e-17 62.7 18.8 2.7 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|292656814|ref|YP_003536711.1| - 7.6e-14 52.2 0.2 7.6e-14 52.2 0.2 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|292656814|ref|YP_003536711.1| - 9.3e-12 45.5 0.5 1.5e-11 44.8 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|292656814|ref|YP_003536711.1| - 8.7e-06 25.4 3.4 1.8e-05 24.4 3.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Aldo_ket_red PF00248.21 gi|292656815|ref|YP_003536712.1| - 2.4e-80 269.9 0.0 2.9e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TMEM61 PF15105.6 gi|292656815|ref|YP_003536712.1| - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 TMEM61 protein family DNA_primase_S PF01896.19 gi|292656816|ref|YP_003536713.1| - 6.6e-25 88.2 0.0 9.2e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 DNA primase small subunit Holin_BhlA PF10960.8 gi|292656817|ref|YP_003536714.1| - 0.24 11.4 2.7 0.89 9.6 0.4 2.2 1 1 1 2 2 2 0 BhlA holin family AhpC-TSA PF00578.21 gi|292656818|ref|YP_003536715.1| - 3.3e-36 123.9 0.0 3.9e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|292656818|ref|YP_003536715.1| - 1e-22 80.4 0.0 1.1e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|292656818|ref|YP_003536715.1| - 1.3e-05 25.2 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|292656818|ref|YP_003536715.1| - 0.011 15.3 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AAA PF00004.29 gi|292656819|ref|YP_003536716.1| - 1.4e-99 329.7 0.9 1.4e-48 164.7 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|292656819|ref|YP_003536716.1| - 2.3e-28 97.7 5.5 1.2e-14 53.8 0.8 3.1 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|292656819|ref|YP_003536716.1| - 4.8e-23 81.1 0.0 2.2e-22 79.0 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|292656819|ref|YP_003536716.1| - 8.3e-19 68.3 0.1 2.8e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|292656819|ref|YP_003536716.1| - 5.6e-17 61.9 0.0 2.1e-08 34.1 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|292656819|ref|YP_003536716.1| - 2.6e-14 53.9 0.5 1.5e-06 28.7 0.0 3.9 3 2 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|292656819|ref|YP_003536716.1| - 2.7e-13 49.5 0.3 5.6e-13 48.5 0.3 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|292656819|ref|YP_003536716.1| - 2.5e-11 43.7 0.7 0.00022 21.2 0.0 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|292656819|ref|YP_003536716.1| - 1.2e-10 41.8 0.2 0.0017 18.6 0.0 3.6 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|292656819|ref|YP_003536716.1| - 1.7e-10 40.6 0.0 0.00015 21.1 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|292656819|ref|YP_003536716.1| - 1.8e-10 41.0 0.0 0.00022 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|292656819|ref|YP_003536716.1| - 1.9e-10 41.1 0.0 0.0011 19.2 0.0 3.0 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|292656819|ref|YP_003536716.1| - 9e-08 32.5 0.0 0.026 14.9 0.0 2.7 2 1 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|292656819|ref|YP_003536716.1| - 9.9e-08 31.9 0.0 0.0041 16.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|292656819|ref|YP_003536716.1| - 1.5e-07 31.1 0.0 0.023 14.2 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|292656819|ref|YP_003536716.1| - 4.5e-07 29.5 0.4 0.015 14.7 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|292656819|ref|YP_003536716.1| - 4.9e-07 30.4 0.1 0.067 13.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.11 gi|292656819|ref|YP_003536716.1| - 5.4e-07 29.5 0.0 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|292656819|ref|YP_003536716.1| - 7.6e-07 28.9 0.8 1.2 8.6 0.1 4.6 4 1 0 4 4 4 2 AAA domain DUF815 PF05673.13 gi|292656819|ref|YP_003536716.1| - 4.2e-06 26.1 0.0 0.0084 15.3 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|292656819|ref|YP_003536716.1| - 6.1e-06 26.6 0.1 0.091 13.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain Sigma54_activat PF00158.26 gi|292656819|ref|YP_003536716.1| - 7e-06 25.8 0.1 0.15 11.8 0.0 3.0 2 2 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.9 gi|292656819|ref|YP_003536716.1| - 1.5e-05 24.4 0.0 0.061 12.5 0.0 2.6 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) TsaE PF02367.17 gi|292656819|ref|YP_003536716.1| - 1.5e-05 25.0 0.0 0.17 11.9 0.0 2.3 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|292656819|ref|YP_003536716.1| - 1.8e-05 24.0 0.0 0.32 10.1 0.0 3.2 3 0 0 3 3 3 2 NB-ARC domain PhoH PF02562.16 gi|292656819|ref|YP_003536716.1| - 2.1e-05 24.1 0.1 0.095 12.1 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.27 gi|292656819|ref|YP_003536716.1| - 2.1e-05 25.1 0.0 0.4 11.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|292656819|ref|YP_003536716.1| - 2.4e-05 24.2 0.0 0.14 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|292656819|ref|YP_003536716.1| - 2.9e-05 23.9 0.0 0.25 11.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|292656819|ref|YP_003536716.1| - 3.7e-05 23.2 0.9 0.94 8.8 0.0 3.8 3 1 1 4 4 4 2 KaiC AAA_11 PF13086.6 gi|292656819|ref|YP_003536716.1| - 3.7e-05 23.6 0.5 0.17 11.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|292656819|ref|YP_003536716.1| - 5.6e-05 23.1 0.1 1.2 9.0 0.0 3.8 3 1 0 3 3 3 2 NACHT domain Bac_DnaA PF00308.18 gi|292656819|ref|YP_003536716.1| - 7.5e-05 22.7 0.0 0.071 12.9 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|292656819|ref|YP_003536716.1| - 0.00012 21.4 1.8 0.45 9.8 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin Parvo_NS1 PF01057.17 gi|292656819|ref|YP_003536716.1| - 0.00024 20.3 0.0 0.66 9.0 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|292656819|ref|YP_003536716.1| - 0.0005 20.0 0.4 2.6 7.9 0.0 3.6 2 1 1 3 3 3 2 NTPase AAA_19 PF13245.6 gi|292656819|ref|YP_003536716.1| - 0.00059 20.2 0.5 2.2 8.6 0.2 2.9 2 1 1 3 3 2 2 AAA domain AAA_17 PF13207.6 gi|292656819|ref|YP_003536716.1| - 0.00076 19.9 0.0 1.8 9.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|292656819|ref|YP_003536716.1| - 0.001 19.0 0.0 0.69 9.8 0.0 3.1 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea Sigma54_activ_2 PF14532.6 gi|292656819|ref|YP_003536716.1| - 0.0014 18.7 0.0 1.2 9.2 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Vps4_C PF09336.10 gi|292656819|ref|YP_003536716.1| - 0.0047 16.9 0.1 3.1 7.9 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain TniB PF05621.11 gi|292656819|ref|YP_003536716.1| - 0.0063 15.9 0.0 11 5.3 0.0 3.6 3 1 1 4 4 3 0 Bacterial TniB protein ResIII PF04851.15 gi|292656819|ref|YP_003536716.1| - 0.01 15.9 0.0 1.9 8.4 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|292656819|ref|YP_003536716.1| - 0.016 14.2 0.0 2.8 6.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase T2SSE PF00437.20 gi|292656819|ref|YP_003536716.1| - 0.018 14.1 0.0 2.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Zot PF05707.12 gi|292656819|ref|YP_003536716.1| - 0.026 14.1 0.0 2 8.0 0.0 3.1 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Cytidylate_kin PF02224.18 gi|292656819|ref|YP_003536716.1| - 0.052 13.3 1.8 4.9 6.8 0.0 3.0 3 0 0 3 3 3 0 Cytidylate kinase Rad17 PF03215.15 gi|292656819|ref|YP_003536716.1| - 0.06 13.3 0.0 14 5.5 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|292656819|ref|YP_003536716.1| - 0.066 13.0 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain CPT PF07931.12 gi|292656819|ref|YP_003536716.1| - 0.071 13.0 0.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|292656819|ref|YP_003536716.1| - 0.077 13.1 0.0 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Torsin KAP_NTPase PF07693.14 gi|292656819|ref|YP_003536716.1| - 0.08 12.2 0.1 2.3 7.4 0.0 2.7 2 2 1 4 4 4 0 KAP family P-loop domain Cytidylate_kin2 PF13189.6 gi|292656819|ref|YP_003536716.1| - 0.092 12.9 0.1 3.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family SKI PF01202.22 gi|292656819|ref|YP_003536716.1| - 0.098 12.8 0.0 14 5.8 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|292656819|ref|YP_003536716.1| - 0.098 12.9 0.1 2.8 8.2 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain HSP20 PF00011.21 gi|292656820|ref|YP_003536717.1| - 0.012 15.7 0.3 0.73 10.0 0.3 2.1 1 1 0 1 1 1 0 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|292656820|ref|YP_003536717.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.5 1 1 0 1 1 1 0 HSP20-like domain found in ArsA Abhydrolase_6 PF12697.7 gi|292656821|ref|YP_003536718.1| - 2.3e-20 74.2 7.9 2.6e-20 74.0 7.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|292656821|ref|YP_003536718.1| - 6.9e-19 68.5 0.1 1.6e-10 41.0 0.3 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|292656821|ref|YP_003536718.1| - 2e-17 63.3 0.1 2.8e-17 62.8 0.1 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|292656821|ref|YP_003536718.1| - 4.6e-05 23.5 0.0 9.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|292656821|ref|YP_003536718.1| - 0.011 15.6 0.0 4.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|292656821|ref|YP_003536718.1| - 0.019 14.6 0.1 0.058 13.1 0.0 2.0 2 1 0 2 2 2 0 Serine hydrolase (FSH1) Esterase PF00756.20 gi|292656821|ref|YP_003536718.1| - 0.04 13.6 0.2 0.098 12.3 0.2 1.7 1 1 0 1 1 1 0 Putative esterase Pantoate_transf PF02548.15 gi|292656822|ref|YP_003536719.1| - 5.8e-99 330.7 1.8 6.5e-99 330.5 1.8 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|292656822|ref|YP_003536719.1| - 0.00046 19.7 5.1 0.0032 17.0 5.1 2.2 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Pilin_N PF07790.11 gi|292656823|ref|YP_003536720.1| - 2.3e-15 57.2 0.4 4.8e-14 53.0 0.3 2.1 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Phage_holin_3_6 PF07332.11 gi|292656824|ref|YP_003536721.1| - 0.015 15.3 0.5 0.018 15.1 0.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III IF-2B PF01008.17 gi|292656825|ref|YP_003536722.1| - 1.6e-43 149.0 0.1 1.8e-43 148.8 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family GFO_IDH_MocA PF01408.22 gi|292656826|ref|YP_003536723.1| - 5.1e-16 59.6 0.0 8.3e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|292656826|ref|YP_003536723.1| - 9e-12 45.0 0.5 8.6e-11 41.9 0.2 2.5 2 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|292656826|ref|YP_003536723.1| - 0.022 14.4 0.0 0.089 12.4 0.0 1.9 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain NAD_binding_3 PF03447.16 gi|292656826|ref|YP_003536723.1| - 0.059 14.0 0.0 0.13 12.9 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|292656827|ref|YP_003536724.1| - 8.9e-31 107.0 1.4 1.3e-30 106.4 1.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|292656827|ref|YP_003536724.1| - 5.2e-20 70.9 0.1 1.2e-19 69.8 0.1 1.7 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.8 gi|292656827|ref|YP_003536724.1| - 0.049 13.7 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) Acetyltransf_7 PF13508.7 gi|292656828|ref|YP_003536725.1| - 1.5e-13 51.0 0.2 4.2e-13 49.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656828|ref|YP_003536725.1| - 4e-13 49.4 0.0 5.6e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292656828|ref|YP_003536725.1| - 1.3e-11 44.7 0.1 1.9e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|292656828|ref|YP_003536725.1| - 1.5e-11 44.1 0.0 2.7e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|292656828|ref|YP_003536725.1| - 0.00049 20.3 0.0 0.0016 18.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656828|ref|YP_003536725.1| - 0.0013 18.8 0.1 0.11 12.6 0.0 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Archease PF01951.16 gi|292656829|ref|YP_003536726.1| - 4.9e-36 124.0 0.2 5.5e-36 123.9 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2793 PF10983.8 gi|292656829|ref|YP_003536726.1| - 0.017 15.0 0.4 0.074 12.9 0.2 2.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2793) DoxX PF07681.12 gi|292656830|ref|YP_003536727.1| - 1.4e-06 28.8 9.8 1.4e-06 28.8 9.8 4.0 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|292656830|ref|YP_003536727.1| - 0.13 12.2 10.2 5.7 6.8 1.0 3.7 3 1 0 3 3 3 0 TQO small subunit DoxD RtcB PF01139.17 gi|292656831|ref|YP_003536728.1| - 2e-155 518.1 0.0 2.2e-155 517.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF2207 PF09972.9 gi|292656832|ref|YP_003536729.1| - 1.1 8.0 5.2 3.5 6.3 5.2 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) NCE101 PF11654.8 gi|292656832|ref|YP_003536729.1| - 1.6 8.5 3.9 0.38 10.5 0.3 1.9 2 0 0 2 2 2 0 Non-classical export protein 1 MitoNEET_N PF10660.9 gi|292656832|ref|YP_003536729.1| - 3.2 7.8 4.7 3.6 7.7 0.2 2.3 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus zf-NADH-PPase PF09297.11 gi|292656833|ref|YP_003536730.1| - 0.031 13.9 0.1 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|292656833|ref|YP_003536730.1| - 0.038 13.4 0.1 0.091 12.2 0.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|292656833|ref|YP_003536730.1| - 0.12 12.1 0.3 0.41 10.4 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|292656833|ref|YP_003536730.1| - 0.24 10.9 1.4 0.88 9.1 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|292656833|ref|YP_003536730.1| - 0.29 10.9 0.1 0.29 10.9 0.1 2.1 3 0 0 3 3 3 0 zinc-ribbon domain HAD_2 PF13419.6 gi|292656834|ref|YP_003536731.1| - 2.8e-17 63.4 0.0 1e-15 58.3 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292656834|ref|YP_003536731.1| - 2.8e-07 31.1 1.7 0.00014 22.3 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292656834|ref|YP_003536731.1| - 3.1e-05 24.0 0.1 7.2e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|292656834|ref|YP_003536731.1| - 0.15 12.4 6.0 0.55 10.6 6.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|292656834|ref|YP_003536731.1| - 0.24 11.1 0.2 6.3 6.5 0.0 2.1 2 0 0 2 2 2 0 Polynucleotide kinase 3 phosphatase Acyl-CoA_dh_1 PF00441.24 gi|292656835|ref|YP_003536732.1| - 2.3e-51 174.0 0.9 3.5e-51 173.3 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|292656835|ref|YP_003536732.1| - 1.2e-33 116.1 1.0 2.1e-33 115.3 0.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|292656835|ref|YP_003536732.1| - 1.9e-24 86.4 3.0 4.5e-24 85.2 3.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|292656835|ref|YP_003536732.1| - 7e-22 77.4 0.0 1.5e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF743 PF05332.11 gi|292656835|ref|YP_003536732.1| - 0.16 12.0 0.1 0.3 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF743) tRNA_SAD PF07973.14 gi|292656836|ref|YP_003536733.1| - 3.6e-12 46.2 0.1 6.1e-12 45.4 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|292656836|ref|YP_003536733.1| - 1.2e-10 42.0 3.4 2.1e-10 41.2 3.4 1.4 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|292656836|ref|YP_003536733.1| - 5.2e-08 31.9 0.1 7.5e-08 31.3 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_3 PF01381.22 gi|292656837|ref|YP_003536734.1| - 8.3e-05 22.6 0.2 0.00012 22.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|292656837|ref|YP_003536734.1| - 0.00028 20.7 1.4 0.0005 19.9 0.7 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|292656837|ref|YP_003536734.1| - 0.00031 21.0 1.8 0.00031 21.0 1.8 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|292656837|ref|YP_003536734.1| - 0.00063 19.7 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|292656837|ref|YP_003536734.1| - 0.023 14.7 0.3 0.055 13.4 0.3 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|292656837|ref|YP_003536734.1| - 0.068 13.3 0.5 0.12 12.5 0.5 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|292656837|ref|YP_003536734.1| - 0.09 12.7 0.3 0.18 11.7 0.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF420 PF04238.12 gi|292656838|ref|YP_003536735.1| - 2.6e-38 131.3 10.6 3.9e-38 130.7 10.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|292656838|ref|YP_003536735.1| - 0.00027 21.2 2.0 0.00027 21.2 2.0 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2306) Otopetrin PF03189.13 gi|292656838|ref|YP_003536735.1| - 0.097 11.5 1.3 0.11 11.3 1.3 1.2 1 0 0 1 1 1 0 Otopetrin DUF3397 PF11877.8 gi|292656838|ref|YP_003536735.1| - 0.21 11.8 13.4 2 8.7 0.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3397) DUF1240 PF06836.12 gi|292656838|ref|YP_003536735.1| - 5.7 7.5 10.0 0.17 12.5 2.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) GATase_7 PF13537.6 gi|292656839|ref|YP_003536736.1| - 6.8e-21 74.4 0.0 1.2e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|292656839|ref|YP_003536736.1| - 6.1e-19 68.5 0.0 1.2e-18 67.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|292656839|ref|YP_003536736.1| - 1.2e-05 24.3 0.0 2.2e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|292656839|ref|YP_003536736.1| - 0.00033 20.2 0.0 0.00077 19.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Ribosomal_L37e PF01907.19 gi|292656840|ref|YP_003536737.1| - 3.6e-22 78.3 14.0 3.9e-22 78.2 14.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|292656840|ref|YP_003536737.1| - 0.012 15.6 2.6 0.017 15.1 2.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-piccolo PF05715.13 gi|292656840|ref|YP_003536737.1| - 0.043 14.0 4.1 0.12 12.5 4.1 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|292656840|ref|YP_003536737.1| - 0.064 13.5 9.2 0.092 13.0 8.7 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|292656840|ref|YP_003536737.1| - 0.11 12.3 6.1 0.58 9.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|292656840|ref|YP_003536737.1| - 0.11 12.5 2.7 0.13 12.3 2.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|292656840|ref|YP_003536737.1| - 0.7 9.4 5.2 7.6 6.1 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|292656840|ref|YP_003536737.1| - 0.7 9.8 5.9 1.2 9.0 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit YhfH PF14149.6 gi|292656840|ref|YP_003536737.1| - 1.4 8.9 7.0 2.1 8.4 0.6 2.2 1 1 1 2 2 2 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|292656840|ref|YP_003536737.1| - 2.1 8.1 8.3 7.7 6.3 2.4 2.4 2 1 0 2 2 2 0 Rubredoxin metal binding domain LSM PF01423.22 gi|292656841|ref|YP_003536738.1| - 1.2e-16 60.1 0.0 1.4e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|292656841|ref|YP_003536738.1| - 8e-08 32.3 0.0 8.9e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Lactamase_B_2 PF12706.7 gi|292656842|ref|YP_003536739.1| - 5.9e-09 35.7 2.8 1.4e-07 31.3 0.3 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292656842|ref|YP_003536739.1| - 2.9e-07 30.7 2.4 9.7e-07 29.0 2.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|292656842|ref|YP_003536739.1| - 0.0004 20.3 1.7 0.0075 16.2 0.2 2.9 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|292656843|ref|YP_003536740.1| - 1.5e-64 217.6 0.2 1.8e-64 217.2 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.21 gi|292656844|ref|YP_003536741.1| - 1.6e-60 204.6 0.0 2.2e-60 204.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|292656844|ref|YP_003536741.1| - 1.5e-14 54.3 0.0 4.5e-14 52.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Cyclase PF04199.13 gi|292656845|ref|YP_003536742.1| - 8e-21 74.7 0.0 1e-20 74.4 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase DUF456 PF04306.13 gi|292656846|ref|YP_003536743.1| - 9.3e-27 94.0 24.0 9.3e-27 94.0 24.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Fer4_7 PF12838.7 gi|292656847|ref|YP_003536744.1| - 1.9e-12 47.5 21.1 1.5e-06 28.7 8.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|292656847|ref|YP_003536744.1| - 8.2e-12 44.4 12.3 6.3e-08 32.1 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|292656847|ref|YP_003536744.1| - 2.9e-08 33.8 4.3 4.3e-08 33.2 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292656847|ref|YP_003536744.1| - 5.4e-07 29.6 18.1 5.2e-05 23.3 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|292656847|ref|YP_003536744.1| - 1.2e-06 28.3 13.4 1.7e-05 24.7 5.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|292656847|ref|YP_003536744.1| - 2.9e-06 27.3 11.4 3.2e-05 24.0 11.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|292656847|ref|YP_003536744.1| - 3.2e-06 27.5 1.3 0.0093 16.4 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|292656847|ref|YP_003536744.1| - 5.5e-06 27.2 4.1 0.00029 21.7 1.0 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|292656847|ref|YP_003536744.1| - 1.8e-05 25.2 1.2 0.034 14.7 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|292656847|ref|YP_003536744.1| - 9.6e-05 22.3 9.7 0.0031 17.5 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|292656847|ref|YP_003536744.1| - 0.0012 19.2 2.4 0.0012 19.2 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|292656847|ref|YP_003536744.1| - 0.0024 18.7 4.1 0.0024 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|292656847|ref|YP_003536744.1| - 0.0041 17.3 3.9 0.0041 17.3 3.9 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|292656847|ref|YP_003536744.1| - 0.011 16.2 13.9 0.21 12.2 13.9 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I ETF PF01012.21 gi|292656848|ref|YP_003536745.1| - 1.8e-37 129.0 0.1 2.5e-37 128.5 0.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|292656849|ref|YP_003536746.1| - 2.7e-26 91.4 0.4 7.3e-26 90.0 0.4 1.8 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|292656849|ref|YP_003536746.1| - 3e-18 66.3 0.0 9.5e-18 64.7 0.0 1.9 1 1 0 1 1 1 1 Electron transfer flavoprotein domain FAD_binding_3 PF01494.19 gi|292656850|ref|YP_003536747.1| - 9.4e-10 38.3 2.9 0.00034 20.0 0.6 2.8 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|292656850|ref|YP_003536747.1| - 2.1e-05 24.1 0.6 3.6e-05 23.3 0.2 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|292656850|ref|YP_003536747.1| - 5.7e-05 22.9 3.8 0.0087 15.7 1.2 2.6 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292656850|ref|YP_003536747.1| - 7.2e-05 22.1 4.0 0.016 14.5 1.8 2.5 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|292656850|ref|YP_003536747.1| - 0.00015 21.9 0.5 0.0008 19.6 0.5 2.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|292656850|ref|YP_003536747.1| - 0.00087 18.6 0.5 0.0017 17.6 0.5 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|292656850|ref|YP_003536747.1| - 0.0013 17.9 7.0 0.007 15.5 3.3 2.2 1 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|292656850|ref|YP_003536747.1| - 0.0033 16.2 1.7 0.0052 15.5 1.1 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|292656850|ref|YP_003536747.1| - 0.0056 16.0 0.7 0.0091 15.3 0.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|292656850|ref|YP_003536747.1| - 0.024 15.2 1.8 1.4 9.6 0.8 2.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ETF_QO PF05187.13 gi|292656850|ref|YP_003536747.1| - 0.035 14.2 0.1 0.06 13.5 0.1 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|292656850|ref|YP_003536747.1| - 0.094 13.3 1.6 0.2 12.3 1.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|292656850|ref|YP_003536747.1| - 0.11 12.6 1.0 0.29 11.3 1.0 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain GIDA PF01134.22 gi|292656850|ref|YP_003536747.1| - 0.46 9.5 5.4 0.33 10.0 2.9 1.9 3 0 0 3 3 3 0 Glucose inhibited division protein A Acetyltransf_1 PF00583.25 gi|292656852|ref|YP_003536749.1| - 2.2e-14 53.7 0.1 3.4e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|292656852|ref|YP_003536749.1| - 1e-08 35.4 0.0 1.5e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656852|ref|YP_003536749.1| - 5.5e-07 29.9 0.0 1e-06 29.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656852|ref|YP_003536749.1| - 8.5e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292656852|ref|YP_003536749.1| - 0.00028 20.9 0.0 0.0007 19.7 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|292656852|ref|YP_003536749.1| - 0.00033 20.7 0.0 0.0006 19.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|292656852|ref|YP_003536749.1| - 0.0053 17.4 0.0 0.0092 16.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Fe_dep_repress PF01325.19 gi|292656852|ref|YP_003536749.1| - 0.016 15.4 0.0 0.16 12.2 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|292656852|ref|YP_003536749.1| - 0.018 14.8 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Acetyltransf_6 PF13480.7 gi|292656852|ref|YP_003536749.1| - 0.02 15.0 1.6 0.029 14.5 0.1 2.0 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|292656852|ref|YP_003536749.1| - 0.038 14.0 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Acetyltransf_8 PF13523.6 gi|292656852|ref|YP_003536749.1| - 0.066 12.9 0.2 0.52 10.0 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656852|ref|YP_003536749.1| - 0.094 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein DprA_WH PF17782.1 gi|292656852|ref|YP_003536749.1| - 0.11 12.6 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 DprA winged helix domain Helicase_RecD PF05127.14 gi|292656854|ref|YP_003536751.1| - 2e-48 164.6 0.0 3e-48 164.0 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|292656854|ref|YP_003536751.1| - 2.6e-41 141.5 0.0 2.5e-25 89.2 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|292656854|ref|YP_003536751.1| - 5.5e-25 87.1 0.0 4.7e-24 84.2 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|292656854|ref|YP_003536751.1| - 3.5e-06 26.9 2.3 8e-06 25.7 2.3 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_10 PF13673.7 gi|292656854|ref|YP_003536751.1| - 0.039 13.9 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656854|ref|YP_003536751.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Ribosomal_L7Ae PF01248.26 gi|292656855|ref|YP_003536752.1| - 1.8e-25 88.5 0.0 2.1e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|292656855|ref|YP_003536752.1| - 0.00015 21.5 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|292656855|ref|YP_003536752.1| - 0.00063 20.0 1.2 0.095 13.0 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.18 gi|292656856|ref|YP_003536753.1| - 2.1e-28 98.1 0.7 2.3e-28 97.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|292656857|ref|YP_003536754.1| - 5.2e-22 77.8 0.0 5.5e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e NDK PF00334.19 gi|292656858|ref|YP_003536755.1| - 2.1e-56 189.7 0.0 2.3e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Meth_synt_2 PF01717.18 gi|292656860|ref|YP_003536757.1| - 5e-55 187.1 0.0 7.2e-55 186.5 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|292656860|ref|YP_003536757.1| - 6.2e-12 45.7 0.0 9.5e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|292656860|ref|YP_003536757.1| - 1.7e-06 27.5 0.0 2.3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.12 gi|292656861|ref|YP_003536758.1| - 8.8e-14 51.7 0.0 2.4e-13 50.3 0.0 1.6 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|292656861|ref|YP_003536758.1| - 2.1e-08 33.9 0.0 0.00065 19.1 0.0 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain MTS PF05175.14 gi|292656862|ref|YP_003536759.1| - 5.4e-12 45.6 0.0 1.9e-08 34.1 0.0 2.0 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|292656862|ref|YP_003536759.1| - 1.2e-10 42.0 0.1 6.9e-09 36.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292656862|ref|YP_003536759.1| - 8.5e-10 39.2 0.0 4.1e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292656862|ref|YP_003536759.1| - 2.4e-07 31.4 0.0 2.4e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292656862|ref|YP_003536759.1| - 1.4e-06 28.1 0.0 1.9e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|292656862|ref|YP_003536759.1| - 1.9e-06 27.8 0.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292656862|ref|YP_003536759.1| - 0.00086 18.7 0.0 0.32 10.3 0.0 2.1 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family UPF0146 PF03686.13 gi|292656862|ref|YP_003536759.1| - 0.009 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_32 PF13679.6 gi|292656862|ref|YP_003536759.1| - 0.018 15.0 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain DUF1269 PF06897.12 gi|292656862|ref|YP_003536759.1| - 0.019 15.3 0.1 0.27 11.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) PrmA PF06325.13 gi|292656862|ref|YP_003536759.1| - 0.021 14.2 0.1 0.048 13.1 0.1 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|292656862|ref|YP_003536759.1| - 0.034 13.8 0.0 0.047 13.3 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|292656862|ref|YP_003536759.1| - 0.051 13.3 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|292656862|ref|YP_003536759.1| - 0.12 11.9 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase PCMT PF01135.19 gi|292656862|ref|YP_003536759.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AlaDh_PNT_C PF01262.21 gi|292656862|ref|YP_003536759.1| - 0.16 11.3 0.4 0.21 10.8 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MS_channel PF00924.18 gi|292656863|ref|YP_003536760.1| - 1.3e-46 158.7 0.1 1.3e-46 158.7 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF4271 PF14093.6 gi|292656863|ref|YP_003536760.1| - 0.11 12.4 0.3 0.16 11.9 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) DUF2231 PF09990.9 gi|292656863|ref|YP_003536760.1| - 1.9 9.0 8.3 0.74 10.3 2.0 2.6 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) RrnaAD PF00398.20 gi|292656864|ref|YP_003536761.1| - 2.8e-48 164.3 0.0 3.3e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|292656864|ref|YP_003536761.1| - 0.00011 22.8 0.0 0.00024 21.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|292656864|ref|YP_003536761.1| - 0.055 14.1 0.0 0.11 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292656864|ref|YP_003536761.1| - 0.092 13.5 0.0 0.21 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|292656864|ref|YP_003536761.1| - 0.13 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF655 PF04919.12 gi|292656865|ref|YP_003536762.1| - 3.3e-61 206.4 0.2 3.8e-61 206.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|292656865|ref|YP_003536762.1| - 3.3e-07 30.4 0.1 8.6e-07 29.1 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|292656865|ref|YP_003536762.1| - 9.4e-05 22.6 0.0 0.00023 21.4 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|292656865|ref|YP_003536762.1| - 0.016 15.1 0.0 0.13 12.2 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|292656865|ref|YP_003536762.1| - 0.18 12.4 3.1 3.3 8.4 0.5 3.4 1 1 1 2 2 2 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|292656866|ref|YP_003536763.1| - 6.5e-15 55.6 1.0 8e-15 55.3 1.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_N PF14842.6 gi|292656866|ref|YP_003536763.1| - 0.013 16.0 1.2 0.082 13.5 0.1 2.5 2 1 0 2 2 2 0 FliG N-terminal domain Arg_decarbox_C PF17944.1 gi|292656866|ref|YP_003536763.1| - 0.023 15.2 3.6 0.65 10.6 0.5 2.5 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Gluconate_2-dh3 PF13618.6 gi|292656866|ref|YP_003536763.1| - 0.13 12.5 1.8 0.92 9.7 0.1 2.5 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 Ribosomal_L21e PF01157.18 gi|292656867|ref|YP_003536764.1| - 2.3e-31 107.6 0.1 2.5e-31 107.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Cys_Met_Meta_PP PF01053.20 gi|292656868|ref|YP_003536765.1| - 3.2e-150 499.9 0.0 3.6e-150 499.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|292656868|ref|YP_003536765.1| - 0.00031 19.8 0.0 0.00052 19.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|292656868|ref|YP_003536765.1| - 0.00042 19.0 0.0 0.00053 18.6 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 gi|292656868|ref|YP_003536765.1| - 0.00055 19.3 0.0 0.0025 17.2 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF2407_C PF13373.6 gi|292656869|ref|YP_003536766.1| - 0.9 9.7 3.2 13 6.0 0.0 2.0 1 1 1 2 2 2 0 DUF2407 C-terminal domain Romo1 PF10247.9 gi|292656869|ref|YP_003536766.1| - 6.9 7.1 13.6 3.9 7.9 3.9 2.1 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 EF1_GNE PF00736.19 gi|292656870|ref|YP_003536767.1| - 4.3e-18 65.3 0.1 4.8e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|292656871|ref|YP_003536768.1| - 1.4e-06 28.1 8.3 6.9e-06 25.9 2.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|292656871|ref|YP_003536768.1| - 0.0025 18.3 11.5 0.027 14.9 6.2 2.0 1 1 1 2 2 2 2 CHY zinc finger DZR PF12773.7 gi|292656871|ref|YP_003536768.1| - 0.006 16.6 13.2 0.32 11.0 13.2 2.2 1 1 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.6 gi|292656871|ref|YP_003536768.1| - 0.0072 16.4 13.7 0.66 10.1 2.2 3.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|292656871|ref|YP_003536768.1| - 0.0092 15.9 10.0 0.036 14.0 1.0 2.3 1 1 1 2 2 2 2 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|292656871|ref|YP_003536768.1| - 0.0093 16.3 11.1 0.11 12.8 3.6 2.1 1 1 1 2 2 2 2 C1 domain zinc_ribbon_10 PF10058.9 gi|292656871|ref|YP_003536768.1| - 0.016 14.9 8.2 4.3 7.1 0.0 3.7 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Rhodanese_C PF12368.8 gi|292656871|ref|YP_003536768.1| - 0.02 15.3 10.2 0.021 15.2 10.2 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal HscB_4_cys PF18256.1 gi|292656871|ref|YP_003536768.1| - 0.026 14.3 1.6 0.026 14.3 1.6 2.9 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf_UBZ PF18439.1 gi|292656871|ref|YP_003536768.1| - 0.032 13.8 15.8 0.045 13.3 0.4 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|292656871|ref|YP_003536768.1| - 0.035 13.8 14.5 0.33 10.7 0.1 4.0 3 1 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|292656871|ref|YP_003536768.1| - 0.038 14.0 12.2 0.18 11.8 12.2 1.9 1 1 0 1 1 1 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|292656871|ref|YP_003536768.1| - 0.079 12.9 15.1 6.5 6.8 0.1 3.9 2 1 1 3 3 3 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|292656871|ref|YP_003536768.1| - 0.081 12.9 12.2 0.11 12.5 1.3 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_11 PF16622.5 gi|292656871|ref|YP_003536768.1| - 0.1 12.4 10.2 0.57 10.0 0.2 3.7 4 0 0 4 4 4 0 zinc-finger C2H2-type Zn_Tnp_IS91 PF14319.6 gi|292656871|ref|YP_003536768.1| - 0.11 12.5 11.4 0.22 11.6 11.4 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain FYVE_2 PF02318.16 gi|292656871|ref|YP_003536768.1| - 0.12 12.6 7.4 0.13 12.5 7.4 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger NMDAR2_C PF10565.9 gi|292656871|ref|YP_003536768.1| - 0.12 11.2 8.1 0.13 11.1 8.1 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Zn-ribbon_8 PF09723.10 gi|292656871|ref|YP_003536768.1| - 0.2 11.8 15.8 0.21 11.8 10.6 2.7 1 1 2 3 3 3 0 Zinc ribbon domain zf-HIT PF04438.16 gi|292656871|ref|YP_003536768.1| - 0.22 11.4 13.9 1.4 8.8 1.7 2.7 2 2 0 2 2 2 0 HIT zinc finger Sgf11 PF08209.11 gi|292656871|ref|YP_003536768.1| - 0.23 11.1 0.5 0.23 11.1 0.5 3.7 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.22 gi|292656871|ref|YP_003536768.1| - 0.25 11.3 11.2 0.13 12.1 1.4 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PolC_DP2 PF03833.13 gi|292656871|ref|YP_003536768.1| - 0.33 8.8 7.7 0.35 8.7 7.7 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 YhfH PF14149.6 gi|292656871|ref|YP_003536768.1| - 0.47 10.5 15.8 9.8 6.3 0.1 3.4 2 1 1 3 3 3 0 YhfH-like protein zf-tcix PF14952.6 gi|292656871|ref|YP_003536768.1| - 0.51 10.0 14.3 9.5 5.9 0.0 3.4 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PhnA_Zn_Ribbon PF08274.12 gi|292656871|ref|YP_003536768.1| - 0.57 10.2 0.2 0.57 10.2 0.2 3.4 2 1 1 4 4 3 0 PhnA Zinc-Ribbon NMD3 PF04981.13 gi|292656871|ref|YP_003536768.1| - 0.57 9.6 9.1 0.61 9.5 9.1 1.0 1 0 0 1 1 1 0 NMD3 family Rubredoxin_2 PF18073.1 gi|292656871|ref|YP_003536768.1| - 0.61 9.9 17.0 16 5.4 0.6 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-ACC PF17848.1 gi|292656871|ref|YP_003536768.1| - 0.64 10.2 0.4 0.64 10.2 0.4 3.9 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L37ae PF01780.19 gi|292656871|ref|YP_003536768.1| - 0.66 10.1 10.3 1.5e+02 2.6 10.3 2.8 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.6 gi|292656871|ref|YP_003536768.1| - 0.73 9.3 17.0 9 5.9 0.3 4.0 3 1 0 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|292656871|ref|YP_003536768.1| - 1.4 9.5 17.1 4.4 8.0 0.4 3.9 3 1 0 3 3 3 0 Zinc finger, C2H2 type zf-C2HC5 PF06221.13 gi|292656871|ref|YP_003536768.1| - 1.5 8.9 12.0 1.1 9.3 7.0 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type UPF0547 PF10571.9 gi|292656871|ref|YP_003536768.1| - 1.5 9.0 0.1 1.5 9.0 0.1 3.3 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|292656871|ref|YP_003536768.1| - 1.7 7.3 11.4 1 8.1 3.5 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-H2C2_2 PF13465.6 gi|292656871|ref|YP_003536768.1| - 2.2 8.9 16.5 3.5 8.2 0.6 4.0 2 1 2 4 4 4 0 Zinc-finger double domain zf-dskA_traR PF01258.17 gi|292656871|ref|YP_003536768.1| - 2.5 8.1 11.8 2.8 7.9 1.8 3.5 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-HYPF PF07503.12 gi|292656871|ref|YP_003536768.1| - 6.1 6.7 13.9 19 5.1 10.0 2.7 2 1 0 2 2 2 0 HypF finger TctA PF01970.16 gi|292656872|ref|YP_003536769.1| - 8.4e-55 186.1 32.1 1.2e-54 185.7 32.1 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.19 gi|292656873|ref|YP_003536770.1| - 4.1e-16 59.3 25.5 6.6e-16 58.7 25.5 1.3 1 1 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|292656873|ref|YP_003536770.1| - 0.019 13.5 5.2 0.022 13.3 5.2 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|292656873|ref|YP_003536770.1| - 1.2 8.3 12.2 1.3 8.3 12.2 1.2 1 0 0 1 1 1 0 NOA36 protein Cwf_Cwc_15 PF04889.12 gi|292656873|ref|YP_003536770.1| - 2 8.1 8.8 2.7 7.7 8.8 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein BUD22 PF09073.10 gi|292656873|ref|YP_003536770.1| - 2.4 7.4 7.9 2.8 7.2 7.9 1.1 1 0 0 1 1 1 0 BUD22 Sigma70_ner PF04546.13 gi|292656873|ref|YP_003536770.1| - 3.5 7.5 12.6 4.2 7.2 12.6 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region PPP4R2 PF09184.11 gi|292656873|ref|YP_003536770.1| - 6.5 6.2 8.5 7.7 6.0 8.5 1.1 1 0 0 1 1 1 0 PPP4R2 SDA1 PF05285.12 gi|292656873|ref|YP_003536770.1| - 9.5 5.5 11.5 12 5.2 11.5 1.1 1 0 0 1 1 1 0 SDA1 Ribosomal_L10 PF00466.20 gi|292656874|ref|YP_003536771.1| - 5e-22 77.9 0.0 1.1e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|292656874|ref|YP_003536771.1| - 3.3e-16 59.0 0.0 5.6e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P RNA_pol_3_Rpc31 PF11705.8 gi|292656874|ref|YP_003536771.1| - 0.37 11.0 9.0 0.58 10.4 9.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_L1 PF00687.21 gi|292656875|ref|YP_003536772.1| - 3.6e-43 147.7 0.0 4.4e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|292656876|ref|YP_003536773.1| - 4e-19 68.2 0.1 6.4e-19 67.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|292656876|ref|YP_003536773.1| - 1.2e-17 64.2 0.0 1.6e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Peptidase_M42 PF05343.14 gi|292656877|ref|YP_003536774.1| - 1.9e-77 260.2 5.2 2.2e-77 260.0 5.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M18 PF02127.15 gi|292656877|ref|YP_003536774.1| - 4.6e-07 29.0 0.2 0.00033 19.6 0.0 2.4 2 1 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) BUD22 PF09073.10 gi|292656878|ref|YP_003536775.1| - 2.5 7.3 5.6 3.2 7.0 5.6 1.2 1 0 0 1 1 1 0 BUD22 GHMP_kinases_N PF00288.26 gi|292656879|ref|YP_003536776.1| - 9.4e-17 61.0 0.5 3.2e-16 59.3 0.2 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|292656879|ref|YP_003536776.1| - 8.6e-13 48.5 0.3 9.1e-12 45.2 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|292656879|ref|YP_003536776.1| - 0.00013 21.4 0.1 0.00031 20.2 0.1 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Delta_lysin PF05372.11 gi|292656879|ref|YP_003536776.1| - 0.15 11.3 0.1 0.26 10.6 0.1 1.3 1 0 0 1 1 1 0 Delta lysin family AA_kinase PF00696.28 gi|292656880|ref|YP_003536777.1| - 1.8e-39 135.8 5.1 2.2e-39 135.5 5.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.7 gi|292656881|ref|YP_003536778.1| - 1.5e-18 67.1 0.3 2e-18 66.6 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|292656881|ref|YP_003536778.1| - 1.7e-13 51.0 1.3 1.7e-13 51.0 1.3 1.9 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|292656881|ref|YP_003536778.1| - 0.032 13.7 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|292656881|ref|YP_003536778.1| - 0.054 13.4 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|292656881|ref|YP_003536778.1| - 0.25 10.4 0.0 0.44 9.6 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II BPD_transp_1 PF00528.22 gi|292656882|ref|YP_003536779.1| - 1.5e-19 70.4 9.3 1.5e-19 70.4 9.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Colicin_V PF02674.16 gi|292656882|ref|YP_003536779.1| - 0.22 11.5 0.1 0.22 11.5 0.1 3.3 3 2 0 3 3 3 0 Colicin V production protein BPD_transp_1 PF00528.22 gi|292656883|ref|YP_003536780.1| - 3.8e-23 82.2 6.1 3.8e-23 82.2 6.1 2.1 4 0 0 4 4 4 1 Binding-protein-dependent transport system inner membrane component DEAD_assoc PF08494.11 gi|292656884|ref|YP_003536781.1| - 3.7e-51 173.7 2.1 7.2e-51 172.7 1.3 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|292656884|ref|YP_003536781.1| - 5e-31 107.8 0.0 6.8e-30 104.1 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|292656884|ref|YP_003536781.1| - 3.1e-18 66.1 0.0 3.8e-17 62.6 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|292656884|ref|YP_003536781.1| - 7.3e-08 32.6 0.0 1.6e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|292656884|ref|YP_003536781.1| - 0.00094 19.5 0.0 0.0043 17.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|292656884|ref|YP_003536781.1| - 0.0054 17.1 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_12 PF13087.6 gi|292656885|ref|YP_003536782.1| - 1.2e-38 132.8 0.0 1.9e-38 132.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|292656885|ref|YP_003536782.1| - 3.3e-38 132.0 0.1 1.2e-18 67.9 0.1 2.5 1 1 1 2 2 2 2 AAA domain Dna2 PF08696.11 gi|292656885|ref|YP_003536782.1| - 4.4e-20 72.4 0.0 2.8e-18 66.5 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.6 gi|292656885|ref|YP_003536782.1| - 6.6e-18 65.1 5.5 2.8e-17 63.1 1.3 2.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|292656885|ref|YP_003536782.1| - 3.4e-14 53.4 0.3 1.1e-12 48.5 0.1 2.9 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|292656885|ref|YP_003536782.1| - 5.7e-09 36.3 0.0 1.7e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|292656885|ref|YP_003536782.1| - 1.2e-07 31.7 0.0 0.44 10.2 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|292656885|ref|YP_003536782.1| - 5.1e-06 26.2 0.0 1.1e-05 25.2 0.0 1.5 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_16 PF13191.6 gi|292656885|ref|YP_003536782.1| - 7.4e-05 23.2 0.4 0.00025 21.5 0.1 2.1 1 1 1 2 2 1 1 AAA ATPase domain UvrD_C_2 PF13538.6 gi|292656885|ref|YP_003536782.1| - 0.00026 20.7 0.0 0.00056 19.7 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|292656885|ref|YP_003536782.1| - 0.0017 18.6 0.0 0.0083 16.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cas_Cas4 PF01930.17 gi|292656885|ref|YP_003536782.1| - 0.002 18.2 0.0 0.0069 16.5 0.0 1.9 2 1 0 2 2 2 1 Domain of unknown function DUF83 Helicase_RecD PF05127.14 gi|292656885|ref|YP_003536782.1| - 0.0028 17.5 0.5 0.0079 16.1 0.1 1.9 2 1 0 2 2 2 1 Helicase ResIII PF04851.15 gi|292656885|ref|YP_003536782.1| - 0.0087 16.1 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit YflT PF11181.8 gi|292656885|ref|YP_003536782.1| - 0.027 15.0 0.1 0.14 12.6 0.1 2.2 2 0 0 2 2 2 0 Heat induced stress protein YflT IstB_IS21 PF01695.17 gi|292656885|ref|YP_003536782.1| - 0.038 13.7 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein PDZ_6 PF17820.1 gi|292656885|ref|YP_003536782.1| - 0.051 13.4 0.0 0.2 11.5 0.0 2.0 1 0 0 1 1 1 0 PDZ domain AAA PF00004.29 gi|292656885|ref|YP_003536782.1| - 0.06 13.8 0.3 0.17 12.3 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|292656885|ref|YP_003536782.1| - 0.079 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|292656885|ref|YP_003536782.1| - 0.08 13.1 0.0 0.23 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|292656885|ref|YP_003536782.1| - 0.1 11.8 0.0 0.62 9.2 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|292656885|ref|YP_003536782.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ThrE PF06738.12 gi|292656887|ref|YP_003536784.1| - 0.0041 16.5 2.3 0.0046 16.4 2.3 1.0 1 0 0 1 1 1 1 Putative threonine/serine exporter Ammonium_transp PF00909.21 gi|292656887|ref|YP_003536784.1| - 0.012 14.3 0.9 0.013 14.2 0.9 1.0 1 0 0 1 1 1 0 Ammonium Transporter Family DUF5612 PF18462.1 gi|292656887|ref|YP_003536784.1| - 0.024 14.5 0.1 0.025 14.4 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) Phage_holin_2_4 PF16082.5 gi|292656887|ref|YP_003536784.1| - 1.8 8.3 5.5 2.7 7.8 5.5 1.5 1 1 0 1 1 1 0 Bacteriophage holin family, superfamily II-like LapA_dom PF06305.11 gi|292656887|ref|YP_003536784.1| - 3.2 7.6 6.6 9 6.2 6.5 1.9 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Zincin_2 PF10103.9 gi|292656888|ref|YP_003536785.1| - 1.7e-62 211.7 4.8 2.7e-31 109.1 1.2 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase Glyoxalase_3 PF13468.6 gi|292656889|ref|YP_003536786.1| - 4.4e-26 92.1 0.8 7.5e-26 91.3 0.4 1.5 2 0 0 2 2 2 1 Glyoxalase-like domain Rhodanese PF00581.20 gi|292656890|ref|YP_003536787.1| - 2.1e-10 41.1 0.0 4.7e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|292656890|ref|YP_003536787.1| - 2.7e-10 40.6 7.6 6.4e-10 39.4 7.6 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292656890|ref|YP_003536787.1| - 0.00028 20.5 0.9 0.00059 19.4 0.9 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_S2 PF00318.20 gi|292656891|ref|YP_003536788.1| - 9.7e-25 87.1 0.1 2.2e-14 53.2 0.6 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.22 gi|292656892|ref|YP_003536789.1| - 1.9e-75 253.9 0.4 2.6e-75 253.4 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|292656892|ref|YP_003536789.1| - 1.6e-35 122.1 0.5 1.7e-34 118.8 0.4 2.6 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|292656892|ref|YP_003536789.1| - 1.1e-11 44.7 0.1 2.2e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|292656892|ref|YP_003536789.1| - 4.3e-05 22.8 1.1 8.5e-05 21.8 0.1 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus CarboxypepD_reg PF13620.6 gi|292656892|ref|YP_003536789.1| - 0.037 14.3 0.1 0.095 13.0 0.1 1.7 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain RNA_pol_Rpb6 PF01192.22 gi|292656893|ref|YP_003536790.1| - 2e-11 43.6 0.1 2.5e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|292656894|ref|YP_003536791.1| - 4.6e-28 97.3 0.3 5.1e-28 97.2 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|292656895|ref|YP_003536792.1| - 8.2e-32 110.3 0.1 9.2e-32 110.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|292656896|ref|YP_003536793.1| - 4.8e-10 39.8 0.5 9.9e-08 32.3 0.5 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|292656897|ref|YP_003536794.1| - 7.6e-13 48.3 0.0 8.2e-13 48.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|292656897|ref|YP_003536794.1| - 4.2e-07 30.7 0.5 1.4e-06 29.0 0.5 1.8 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|292656898|ref|YP_003536795.1| - 4e-20 72.3 0.0 2.2e-19 69.9 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|292656898|ref|YP_003536795.1| - 2.3e-12 46.1 0.0 2.9e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|292656899|ref|YP_003536796.1| - 1e-48 164.3 2.8 1.3e-48 163.9 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|292656899|ref|YP_003536796.1| - 0.1 12.9 0.1 0.15 12.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S4 PF01479.25 gi|292656900|ref|YP_003536797.1| - 4.5e-13 48.7 0.5 2.1e-12 46.6 0.1 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|292656900|ref|YP_003536797.1| - 0.0027 18.6 1.1 0.0074 17.2 0.8 2.0 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.6 gi|292656900|ref|YP_003536797.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 S4 domain Ribosomal_S13 PF00416.22 gi|292656901|ref|YP_003536798.1| - 2.2e-45 154.1 2.7 2.7e-45 153.9 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|292656901|ref|YP_003536798.1| - 0.087 13.4 0.1 0.24 12.0 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Thioredoxin PF00085.20 gi|292656902|ref|YP_003536799.1| - 2.6e-13 49.9 0.0 2.9e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|292656902|ref|YP_003536799.1| - 1.5e-05 25.4 0.0 0.00029 21.2 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|292656902|ref|YP_003536799.1| - 0.00025 21.0 0.0 0.00041 20.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.11 gi|292656902|ref|YP_003536799.1| - 0.008 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE TraF PF13728.6 gi|292656902|ref|YP_003536799.1| - 0.017 14.9 0.0 0.034 14.0 0.0 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein DUF836 PF05768.14 gi|292656902|ref|YP_003536799.1| - 0.033 14.6 0.0 0.044 14.2 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Phosducin PF02114.16 gi|292656902|ref|YP_003536799.1| - 0.12 11.3 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Phosducin OST3_OST6 PF04756.13 gi|292656902|ref|YP_003536799.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DZR PF12773.7 gi|292656903|ref|YP_003536800.1| - 5.5e-05 23.1 0.3 7.8e-05 22.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|292656903|ref|YP_003536800.1| - 0.00014 21.5 0.4 0.0002 21.0 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|292656903|ref|YP_003536800.1| - 0.0013 18.8 0.8 0.0022 18.0 0.8 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|292656903|ref|YP_003536800.1| - 0.0028 18.3 0.0 0.0036 18.0 0.0 1.2 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|292656903|ref|YP_003536800.1| - 0.0035 16.7 0.9 0.0053 16.1 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|292656903|ref|YP_003536800.1| - 0.021 14.3 0.2 0.04 13.4 0.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|292656903|ref|YP_003536800.1| - 0.026 14.7 0.2 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|292656903|ref|YP_003536800.1| - 0.035 13.7 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF2614 PF11023.8 gi|292656903|ref|YP_003536800.1| - 0.12 12.5 0.4 0.12 12.5 0.4 2.1 2 1 1 3 3 3 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|292656903|ref|YP_003536800.1| - 0.8 9.9 2.6 0.42 10.8 0.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF4131 PF13567.6 gi|292656903|ref|YP_003536800.1| - 7 6.3 7.2 5 6.7 5.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Usp PF00582.26 gi|292656904|ref|YP_003536801.1| - 5.9e-09 36.6 9.5 2.9e-07 31.1 9.5 2.0 1 1 0 1 1 1 1 Universal stress protein family Radical_SAM PF04055.21 gi|292656905|ref|YP_003536802.1| - 1.5e-25 90.5 0.1 2e-24 86.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|292656905|ref|YP_003536802.1| - 7.4e-16 58.2 0.0 1.3e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|292656905|ref|YP_003536802.1| - 3.1e-08 34.0 0.0 5.6e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|292656905|ref|YP_003536802.1| - 2.3e-05 24.5 0.0 4.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ParA PF10609.9 gi|292656906|ref|YP_003536803.1| - 4.6e-100 334.1 0.0 5.7e-100 333.8 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|292656906|ref|YP_003536803.1| - 7.3e-14 51.9 0.0 2.8e-13 50.0 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|292656906|ref|YP_003536803.1| - 2.3e-13 50.1 0.7 4.7e-13 49.1 0.7 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|292656906|ref|YP_003536803.1| - 1e-10 41.9 0.6 4.3e-09 36.5 0.6 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|292656906|ref|YP_003536803.1| - 3.3e-08 33.2 0.0 4.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|292656906|ref|YP_003536803.1| - 8.4e-05 21.9 2.4 0.00078 18.7 1.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|292656906|ref|YP_003536803.1| - 0.00011 21.6 0.0 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|292656906|ref|YP_003536803.1| - 0.00043 19.8 0.0 0.0097 15.4 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|292656906|ref|YP_003536803.1| - 0.0012 18.7 0.0 1.1 9.0 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.6 gi|292656906|ref|YP_003536803.1| - 0.0042 16.7 0.0 0.0088 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|292656906|ref|YP_003536803.1| - 0.0071 16.3 0.0 0.52 10.2 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|292656906|ref|YP_003536803.1| - 0.037 13.5 0.2 0.31 10.5 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|292656906|ref|YP_003536803.1| - 0.066 13.0 0.0 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF1610 PF07754.11 gi|292656906|ref|YP_003536803.1| - 0.078 13.0 0.3 0.57 10.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AAA_18 PF13238.6 gi|292656906|ref|YP_003536803.1| - 0.17 12.5 0.0 0.53 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain UDG PF03167.19 gi|292656908|ref|YP_003536805.1| - 7.5e-24 84.5 0.0 9e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2064 PF09837.9 gi|292656909|ref|YP_003536806.1| - 0.00015 21.5 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|292656909|ref|YP_003536806.1| - 0.077 12.2 0.0 0.75 8.9 0.0 2.0 2 0 0 2 2 2 0 Guanylyl transferase CofC like Acetyltransf_1 PF00583.25 gi|292656910|ref|YP_003536807.1| - 6e-11 42.6 0.0 1.1e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|292656910|ref|YP_003536807.1| - 5.8e-06 26.7 0.0 1.2e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|292656910|ref|YP_003536807.1| - 0.00067 19.8 0.9 0.0021 18.2 0.4 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|292656910|ref|YP_003536807.1| - 0.0012 18.9 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|292656910|ref|YP_003536807.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292656910|ref|YP_003536807.1| - 0.0017 18.3 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CMAS PF02353.20 gi|292656911|ref|YP_003536808.1| - 0.088 12.1 0.3 0.1 11.9 0.3 1.0 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PRK PF00485.18 gi|292656912|ref|YP_003536809.1| - 1.3e-52 178.4 0.1 1.8e-52 177.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|292656912|ref|YP_003536809.1| - 4e-07 30.1 0.1 1.4e-06 28.3 0.1 1.7 1 1 0 1 1 1 1 Deoxynucleoside kinase CoaE PF01121.20 gi|292656912|ref|YP_003536809.1| - 0.00011 21.9 1.1 0.035 13.8 0.0 2.6 3 0 0 3 3 3 2 Dephospho-CoA kinase AAA_18 PF13238.6 gi|292656912|ref|YP_003536809.1| - 0.00018 22.1 0.9 0.0005 20.6 0.6 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|292656912|ref|YP_003536809.1| - 0.00046 19.5 0.1 0.0013 18.0 0.1 1.9 1 1 1 2 2 2 1 Zeta toxin AAA_22 PF13401.6 gi|292656912|ref|YP_003536809.1| - 0.00055 20.2 0.0 0.00098 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|292656912|ref|YP_003536809.1| - 0.00057 20.4 0.1 0.001 19.6 0.1 1.5 1 1 0 1 1 1 1 ABC transporter AAA_28 PF13521.6 gi|292656912|ref|YP_003536809.1| - 0.005 17.1 0.0 0.012 15.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain CPT PF07931.12 gi|292656912|ref|YP_003536809.1| - 0.0076 16.1 0.0 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 gi|292656912|ref|YP_003536809.1| - 0.014 15.6 0.0 0.039 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|292656912|ref|YP_003536809.1| - 0.016 15.7 5.3 1.3 9.5 0.1 2.8 2 1 1 3 3 3 0 AAA domain AAA_26 PF13500.6 gi|292656912|ref|YP_003536809.1| - 0.018 14.9 0.1 0.91 9.3 0.0 2.1 1 1 1 2 2 2 0 AAA domain MobB PF03205.14 gi|292656912|ref|YP_003536809.1| - 0.029 14.3 0.3 0.26 11.2 0.1 2.3 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|292656912|ref|YP_003536809.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|292656912|ref|YP_003536809.1| - 0.051 13.3 0.5 0.84 9.3 0.0 2.4 2 1 0 2 2 2 0 Cytidylate kinase RNA_helicase PF00910.22 gi|292656912|ref|YP_003536809.1| - 0.15 12.4 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Torsin PF06309.11 gi|292656912|ref|YP_003536809.1| - 0.18 11.9 0.0 0.42 10.7 0.0 1.6 1 1 0 1 1 1 0 Torsin Peripla_BP_6 PF13458.6 gi|292656913|ref|YP_003536810.1| - 2.1e-25 90.2 3.3 2.4e-19 70.2 0.5 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|292656913|ref|YP_003536810.1| - 6.5e-17 61.7 1.5 8.6e-12 44.8 0.9 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region TAT_signal PF10518.9 gi|292656913|ref|YP_003536810.1| - 0.00012 21.7 3.0 0.00012 21.7 3.0 2.5 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_5 PF13433.6 gi|292656913|ref|YP_003536810.1| - 0.0069 15.4 0.3 0.015 14.4 0.1 1.6 2 0 0 2 2 2 1 Periplasmic binding protein domain Glyco_hydro_30C PF17189.4 gi|292656914|ref|YP_003536811.1| - 0.05 13.8 0.0 0.98 9.7 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 30 beta sandwich domain CopC PF04234.12 gi|292656914|ref|YP_003536811.1| - 0.1 13.6 0.9 1.4 10.0 0.0 2.4 2 1 0 2 2 2 0 CopC domain ABC_tran PF00005.27 gi|292656915|ref|YP_003536812.1| - 4.7e-30 104.9 0.0 7.7e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292656915|ref|YP_003536812.1| - 3.8e-10 40.1 0.0 0.00061 19.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|292656915|ref|YP_003536812.1| - 0.00012 21.6 0.0 0.0045 16.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|292656915|ref|YP_003536812.1| - 0.0045 16.7 0.1 0.44 10.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|292656915|ref|YP_003536812.1| - 0.0069 16.1 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|292656915|ref|YP_003536812.1| - 0.0084 16.6 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292656915|ref|YP_003536812.1| - 0.016 14.9 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|292656915|ref|YP_003536812.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|292656915|ref|YP_003536812.1| - 0.023 15.0 0.4 0.12 12.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|292656915|ref|YP_003536812.1| - 0.034 14.7 0.2 4.7 7.8 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|292656915|ref|YP_003536812.1| - 0.05 14.0 0.0 0.063 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.21 gi|292656915|ref|YP_003536812.1| - 0.072 13.1 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 MutS domain V MukB PF04310.12 gi|292656915|ref|YP_003536812.1| - 0.11 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal SbcCD_C PF13558.6 gi|292656915|ref|YP_003536812.1| - 0.3 11.4 1.8 7.7 6.8 1.8 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|292656916|ref|YP_003536813.1| - 5.3e-31 108.0 0.0 7.2e-31 107.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|292656916|ref|YP_003536813.1| - 3.3e-11 42.8 0.0 6.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|292656916|ref|YP_003536813.1| - 1.6e-10 41.3 3.1 4.6e-05 23.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|292656916|ref|YP_003536813.1| - 3.2e-05 24.5 0.1 4.8e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|292656916|ref|YP_003536813.1| - 0.00011 21.9 0.4 0.00024 20.8 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|292656916|ref|YP_003536813.1| - 0.00085 18.8 0.2 0.12 11.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|292656916|ref|YP_003536813.1| - 0.0022 18.4 0.1 0.18 12.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|292656916|ref|YP_003536813.1| - 0.0032 17.3 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal AAA_15 PF13175.6 gi|292656916|ref|YP_003536813.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|292656916|ref|YP_003536813.1| - 0.083 13.0 0.4 0.14 12.3 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|292656916|ref|YP_003536813.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_27 PF13514.6 gi|292656916|ref|YP_003536813.1| - 0.11 12.1 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|292656916|ref|YP_003536813.1| - 0.15 11.8 0.2 0.2 11.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|292656916|ref|YP_003536813.1| - 0.15 11.9 0.4 0.28 11.1 0.2 1.5 2 0 0 2 2 2 0 RsgA GTPase BPD_transp_2 PF02653.16 gi|292656917|ref|YP_003536814.1| - 1.2e-44 152.6 28.0 1.2e-44 152.6 28.0 1.6 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|292656918|ref|YP_003536815.1| - 1.5e-31 109.5 44.7 1.5e-31 109.5 44.7 2.1 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Acetyltransf_1 PF00583.25 gi|292656919|ref|YP_003536816.1| - 6.7e-16 58.6 0.1 7.7e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292656919|ref|YP_003536816.1| - 1.1e-11 44.8 0.0 1.6e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292656919|ref|YP_003536816.1| - 3.5e-11 43.4 0.0 5.1e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656919|ref|YP_003536816.1| - 5.2e-06 26.3 0.0 1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|292656919|ref|YP_003536816.1| - 0.0013 19.5 0.1 0.0017 19.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656919|ref|YP_003536816.1| - 0.0023 18.0 0.1 0.0051 16.9 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|292656919|ref|YP_003536816.1| - 0.0028 17.3 0.1 0.0047 16.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|292656919|ref|YP_003536816.1| - 0.0039 16.9 0.1 0.0078 15.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|292656919|ref|YP_003536816.1| - 0.018 15.2 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|292656919|ref|YP_003536816.1| - 0.068 13.5 0.0 1.8 8.9 0.0 2.1 2 0 0 2 2 2 0 Radical SAM superfamily Acetyltransf_CG PF14542.6 gi|292656919|ref|YP_003536816.1| - 0.083 13.0 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF2964 PF11177.8 gi|292656920|ref|YP_003536817.1| - 0.31 11.3 3.2 5.5 7.3 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2964) Cm_res_leader PF08077.11 gi|292656920|ref|YP_003536817.1| - 6.1 7.3 7.4 38 4.9 0.2 3.7 3 0 0 3 3 3 0 Chloramphenicol resistance gene leader peptide PsbX PF06596.11 gi|292656920|ref|YP_003536817.1| - 9.3 6.3 9.2 0.56 10.3 2.8 2.3 2 1 1 3 3 3 0 Photosystem II reaction centre X protein (PsbX) DZR PF12773.7 gi|292656921|ref|YP_003536818.1| - 0.00029 20.8 0.6 0.00038 20.4 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|292656921|ref|YP_003536818.1| - 0.01 15.2 1.7 2 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|292656921|ref|YP_003536818.1| - 0.034 14.1 1.0 0.11 12.4 1.0 1.8 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|292656921|ref|YP_003536818.1| - 0.035 14.2 2.0 0.075 13.2 2.0 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292656921|ref|YP_003536818.1| - 1.4 9.0 5.3 0.8 9.7 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TrmB PF01978.19 gi|292656922|ref|YP_003536819.1| - 3.2e-05 23.7 0.0 4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292656922|ref|YP_003536819.1| - 0.00023 20.9 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|292656922|ref|YP_003536819.1| - 0.013 15.4 0.2 0.023 14.7 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|292656922|ref|YP_003536819.1| - 0.024 14.5 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|292656922|ref|YP_003536819.1| - 0.041 13.8 0.0 0.063 13.3 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|292656922|ref|YP_003536819.1| - 0.044 14.0 0.1 0.06 13.5 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|292656922|ref|YP_003536819.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|292656922|ref|YP_003536819.1| - 0.17 12.0 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain FAD_binding_2 PF00890.24 gi|292656923|ref|YP_003536820.1| - 4.3e-121 404.9 7.0 5.8e-121 404.5 7.0 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|292656923|ref|YP_003536820.1| - 3.4e-37 127.3 1.2 5.6e-37 126.6 1.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|292656923|ref|YP_003536820.1| - 9.1e-09 34.9 3.2 0.0002 20.7 0.1 3.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|292656923|ref|YP_003536820.1| - 8.5e-05 22.3 8.5 0.0035 17.0 8.1 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|292656923|ref|YP_003536820.1| - 0.00038 19.3 1.5 0.00038 19.3 1.5 2.0 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|292656923|ref|YP_003536820.1| - 0.00069 19.1 3.5 0.00069 19.1 3.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|292656923|ref|YP_003536820.1| - 0.0015 17.7 5.2 0.0024 17.0 3.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|292656923|ref|YP_003536820.1| - 0.0032 16.8 1.0 0.0072 15.6 1.0 1.6 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|292656923|ref|YP_003536820.1| - 0.0038 16.5 1.8 0.022 14.0 0.5 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|292656923|ref|YP_003536820.1| - 0.0068 15.7 1.5 0.03 13.6 0.5 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|292656923|ref|YP_003536820.1| - 0.017 14.4 1.3 0.032 13.5 0.3 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|292656923|ref|YP_003536820.1| - 0.059 13.9 5.3 0.28 11.8 0.7 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|292656923|ref|YP_003536820.1| - 0.065 13.5 0.4 0.31 11.3 0.4 2.3 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|292656923|ref|YP_003536820.1| - 0.071 13.6 0.0 0.18 12.3 0.0 1.7 2 0 0 2 2 1 0 Putative NAD(P)-binding Fer2_3 PF13085.6 gi|292656924|ref|YP_003536821.1| - 8.5e-33 112.6 0.0 1.6e-32 111.8 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|292656924|ref|YP_003536821.1| - 6.2e-12 45.8 4.0 6.2e-12 45.8 4.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|292656924|ref|YP_003536821.1| - 6.5e-08 32.6 4.0 1.6e-07 31.4 4.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|292656924|ref|YP_003536821.1| - 1e-05 26.0 2.9 3.7e-05 24.2 2.9 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|292656924|ref|YP_003536821.1| - 0.00011 22.7 4.5 0.00028 21.4 4.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|292656924|ref|YP_003536821.1| - 0.00067 19.8 7.7 0.004 17.3 7.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|292656924|ref|YP_003536821.1| - 0.021 14.6 7.7 0.56 10.0 0.4 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|292656924|ref|YP_003536821.1| - 3 8.8 16.0 1.1 10.2 8.4 3.2 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|292656924|ref|YP_003536821.1| - 7.5 7.7 11.8 2.1 9.5 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|292656924|ref|YP_003536821.1| - 9.9 7.0 8.8 19 6.1 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Sdh_cyt PF01127.22 gi|292656925|ref|YP_003536822.1| - 7.3e-09 35.7 4.7 9.5e-09 35.3 4.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCB2_CCB4 PF11152.8 gi|292656925|ref|YP_003536822.1| - 0.036 13.4 0.3 0.044 13.1 0.3 1.3 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 DUF5472 PF17566.2 gi|292656925|ref|YP_003536822.1| - 7.9 6.5 7.0 4.5 7.3 2.8 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5472) Sdh_cyt PF01127.22 gi|292656926|ref|YP_003536823.1| - 5.2e-25 87.8 6.3 5.8e-25 87.7 6.3 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AstE_AspA PF04952.14 gi|292656927|ref|YP_003536824.1| - 2.6e-65 220.4 0.0 3.2e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family RimK PF08443.11 gi|292656928|ref|YP_003536825.1| - 9e-21 74.3 0.0 1.6e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|292656928|ref|YP_003536825.1| - 3.3e-09 36.7 0.3 1.8e-07 31.1 0.0 2.2 1 1 1 2 2 2 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|292656928|ref|YP_003536825.1| - 2.4e-05 23.8 0.0 4.7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain gag-asp_proteas PF13975.6 gi|292656928|ref|YP_003536825.1| - 0.00015 22.3 0.3 0.00034 21.1 0.3 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|292656928|ref|YP_003536825.1| - 0.00024 21.7 0.7 0.0006 20.4 0.7 1.7 1 0 0 1 1 1 1 Aspartyl protease R2K_3 PF14243.6 gi|292656928|ref|YP_003536825.1| - 0.0017 18.4 0.3 0.0048 16.9 0.2 1.7 2 0 0 2 2 2 1 ATP-grasp domain, R2K clade family 3 ATP-grasp_3 PF02655.14 gi|292656928|ref|YP_003536825.1| - 0.0071 16.4 0.0 0.044 13.8 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|292656928|ref|YP_003536825.1| - 0.07 12.4 0.0 0.2 10.9 0.0 1.7 1 1 0 1 1 1 0 YheC/D like ATP-grasp DUF5488 PF17590.2 gi|292656928|ref|YP_003536825.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5488) HhH-GPD PF00730.25 gi|292656929|ref|YP_003536826.1| - 9.1e-19 67.9 0.0 1.1e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein 3HCDH_N PF02737.18 gi|292656930|ref|YP_003536827.1| - 3.2e-68 229.1 0.1 5.9e-68 228.3 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|292656930|ref|YP_003536827.1| - 1.4e-55 188.3 0.0 3.3e-55 187.1 0.0 1.6 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|292656930|ref|YP_003536827.1| - 7.4e-50 167.5 3.4 1.6e-33 115.2 0.1 3.5 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|292656930|ref|YP_003536827.1| - 1.8e-36 126.4 0.9 1e-32 114.0 0.0 3.1 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|292656930|ref|YP_003536827.1| - 3.3e-06 27.2 0.0 6.7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|292656930|ref|YP_003536827.1| - 2.2e-05 24.7 0.1 6.1e-05 23.2 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|292656930|ref|YP_003536827.1| - 0.00019 21.9 2.9 0.0011 19.5 2.9 2.2 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|292656930|ref|YP_003536827.1| - 0.0085 15.7 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DFP PF04127.15 gi|292656930|ref|YP_003536827.1| - 0.072 12.9 0.7 0.57 10.0 0.4 2.5 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein AlaDh_PNT_C PF01262.21 gi|292656930|ref|YP_003536827.1| - 0.1 11.9 1.1 0.23 10.7 1.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain OTCace PF00185.24 gi|292656930|ref|YP_003536827.1| - 0.16 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Phage_integrase PF00589.22 gi|292656931|ref|YP_003536828.1| - 1.8e-15 57.2 0.0 3.3e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|292656931|ref|YP_003536828.1| - 6e-06 26.6 0.2 1.6e-05 25.2 0.2 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Malate_DH PF12434.8 gi|292656931|ref|YP_003536828.1| - 0.0075 16.3 0.0 0.033 14.2 0.0 2.1 1 0 0 1 1 1 1 Malate dehydrogenase enzyme Phage_int_SAM_1 PF02899.17 gi|292656931|ref|YP_003536828.1| - 0.04 14.2 0.4 0.04 14.2 0.4 2.7 2 2 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|292656933|ref|YP_003536830.1| - 9.7e-14 51.5 0.0 1.6e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|292656933|ref|YP_003536830.1| - 0.0017 18.8 0.4 0.0043 17.5 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Malate_DH PF12434.8 gi|292656933|ref|YP_003536830.1| - 0.079 13.0 0.1 0.21 11.6 0.1 1.7 1 0 0 1 1 1 0 Malate dehydrogenase enzyme Phage_int_SAM_1 PF02899.17 gi|292656933|ref|YP_003536830.1| - 0.093 13.0 0.0 0.44 10.9 0.0 2.2 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Transposase_20 PF02371.16 gi|292656935|ref|YP_003536832.1| - 2.1e-20 72.8 0.0 6.5e-20 71.2 0.0 1.9 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 gi|292656935|ref|YP_003536832.1| - 1.4e-18 67.2 1.9 3.7e-18 65.9 0.9 1.9 2 0 0 2 2 2 1 Transposase Zwint PF15556.6 gi|292656935|ref|YP_003536832.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 ZW10 interactor HTH_24 PF13412.6 gi|292656936|ref|YP_003536833.1| - 0.00011 21.7 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|292656936|ref|YP_003536833.1| - 0.0052 16.6 0.2 0.0069 16.2 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|292656936|ref|YP_003536833.1| - 0.0068 16.9 0.3 0.01 16.3 0.3 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|292656936|ref|YP_003536833.1| - 0.06 13.1 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|292656937|ref|YP_003536834.1| - 0.0018 18.3 2.3 0.021 14.9 2.3 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|292656937|ref|YP_003536834.1| - 0.0025 17.6 0.4 2.6 8.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HNH PF01844.23 gi|292656938|ref|YP_003536835.1| - 0.028 14.6 3.3 0.044 14.0 3.3 1.3 1 0 0 1 1 1 0 HNH endonuclease Spc7 PF08317.11 gi|292656939|ref|YP_003536836.1| - 0.056 12.3 0.0 0.088 11.7 0.0 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein UvrD-helicase PF00580.21 gi|292656941|ref|YP_003536838.1| - 4.9e-15 55.8 0.0 9.4e-15 54.9 0.0 1.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.7 gi|292656941|ref|YP_003536838.1| - 3.9e-10 40.1 0.1 1.3e-09 38.4 0.0 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|292656941|ref|YP_003536838.1| - 1.1e-06 28.3 1.1 0.018 14.9 0.1 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 gi|292656941|ref|YP_003536838.1| - 1.3e-06 28.1 0.0 5.5e-05 22.7 0.0 2.5 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|292656941|ref|YP_003536838.1| - 7.9e-05 23.0 0.0 0.00091 19.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|292656941|ref|YP_003536838.1| - 0.0093 15.7 0.0 0.68 9.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|292656941|ref|YP_003536838.1| - 0.01 16.1 0.0 2.5 8.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|292656941|ref|YP_003536838.1| - 0.037 13.8 0.1 24 4.6 0.0 3.3 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Phage_integrase PF00589.22 gi|292656943|ref|YP_003536840.1| - 7.5e-23 81.2 0.0 9.6e-23 80.8 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family DDE_Tnp_1 PF01609.21 gi|292656944|ref|YP_003536841.1| - 4.6e-27 95.1 0.0 6e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|292656944|ref|YP_003536841.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Nterm_IS4 PF13006.7 gi|292656944|ref|YP_003536841.1| - 0.033 14.4 0.0 0.083 13.1 0.0 1.7 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal MarR_2 PF12802.7 gi|292656947|ref|YP_003536844.1| - 3.2e-11 42.9 0.7 2.8e-05 23.9 0.2 2.5 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|292656947|ref|YP_003536844.1| - 4.1e-11 42.8 1.3 2.5e-05 24.2 0.1 3.0 2 1 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|292656947|ref|YP_003536844.1| - 1.6e-09 37.5 0.0 5.1e-06 26.3 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|292656947|ref|YP_003536844.1| - 8.9e-09 35.0 0.3 2.8e-05 23.8 0.1 2.6 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|292656947|ref|YP_003536844.1| - 1.3e-07 31.5 0.1 0.024 14.6 0.1 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|292656947|ref|YP_003536844.1| - 1.9e-07 30.5 0.1 0.0043 16.6 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|292656947|ref|YP_003536844.1| - 6.5e-07 29.6 0.2 0.0022 18.3 0.1 3.0 3 0 0 3 3 3 2 Transcriptional regulator HTH_11 PF08279.12 gi|292656947|ref|YP_003536844.1| - 3.8e-06 26.7 0.2 0.032 14.2 0.0 2.4 2 0 0 2 2 2 2 HTH domain HTH_29 PF13551.6 gi|292656947|ref|YP_003536844.1| - 2.4e-05 24.2 0.5 0.006 16.6 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.22 gi|292656947|ref|YP_003536844.1| - 6.4e-05 22.8 0.0 0.0033 17.3 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|292656947|ref|YP_003536844.1| - 7.9e-05 23.1 1.0 0.01 16.3 0.2 2.8 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|292656947|ref|YP_003536844.1| - 0.00032 20.4 0.0 0.022 14.6 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r3 PF04539.16 gi|292656947|ref|YP_003536844.1| - 0.001 19.1 0.2 0.21 11.7 0.0 3.0 3 0 0 3 3 3 1 Sigma-70 region 3 HTH_7 PF02796.15 gi|292656947|ref|YP_003536844.1| - 0.0012 18.9 0.0 0.35 11.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_5 PF01022.20 gi|292656947|ref|YP_003536844.1| - 0.0036 17.1 0.0 0.31 10.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|292656947|ref|YP_003536844.1| - 0.0045 16.6 2.0 0.89 9.2 0.0 3.8 4 0 0 4 4 4 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|292656947|ref|YP_003536844.1| - 0.012 15.4 0.2 1.1 9.2 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain HTH_28 PF13518.6 gi|292656947|ref|YP_003536844.1| - 0.017 15.2 6.2 0.3 11.2 0.1 3.7 5 0 0 5 5 3 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|292656947|ref|YP_003536844.1| - 0.018 15.0 0.2 0.33 10.9 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase KORA PF16509.5 gi|292656947|ref|YP_003536844.1| - 0.022 15.0 0.0 3.9 7.8 0.0 2.7 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 gi|292656947|ref|YP_003536844.1| - 0.027 14.4 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|292656947|ref|YP_003536844.1| - 0.036 13.9 5.9 0.7 9.8 0.1 3.2 4 0 0 4 4 3 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.17 gi|292656947|ref|YP_003536844.1| - 0.069 13.0 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit Sigma70_r4 PF04545.16 gi|292656947|ref|YP_003536844.1| - 0.079 12.5 0.0 2.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_CodY PF08222.11 gi|292656947|ref|YP_003536844.1| - 0.085 12.4 0.0 0.23 11.1 0.0 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain HTH_13 PF11972.8 gi|292656947|ref|YP_003536844.1| - 0.15 12.1 0.4 9.6 6.4 0.1 2.7 2 0 0 2 2 2 0 HTH DNA binding domain Clat_adaptor_s PF01217.20 gi|292656947|ref|YP_003536844.1| - 0.2 11.6 0.0 0.36 10.8 0.0 1.3 1 0 0 1 1 1 0 Clathrin adaptor complex small chain HhH-GPD PF00730.25 gi|292656948|ref|YP_003536845.1| - 2.7e-12 47.1 0.0 3.3e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|292656948|ref|YP_003536845.1| - 7.9e-06 25.5 0.0 1.9e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|292656948|ref|YP_003536845.1| - 5.9e-05 23.3 4.2 0.00012 22.2 4.2 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Opy2 PF09463.10 gi|292656948|ref|YP_003536845.1| - 0.13 12.6 3.7 0.2 12.0 3.7 1.2 1 0 0 1 1 1 0 Opy2 protein FAD-oxidase_C PF02913.19 gi|292656948|ref|YP_003536845.1| - 0.17 11.5 0.0 0.22 11.1 0.0 1.1 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain HATPase_c PF02518.26 gi|292656949|ref|YP_003536846.1| - 9.7e-16 58.3 0.0 3.7e-15 56.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|292656949|ref|YP_003536846.1| - 2.3e-08 33.9 0.8 8.8e-08 32.1 0.6 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|292656949|ref|YP_003536846.1| - 0.0071 16.3 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain BAT PF15915.5 gi|292656950|ref|YP_003536847.1| - 9.1e-43 145.8 7.7 9.1e-43 145.8 7.7 2.8 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|292656950|ref|YP_003536847.1| - 7.8e-15 54.4 0.2 1.5e-14 53.5 0.2 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|292656950|ref|YP_003536847.1| - 1.7e-13 51.0 2.4 2.1e-13 50.7 0.7 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|292656950|ref|YP_003536847.1| - 9.7e-07 29.2 0.4 4.1e-06 27.2 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|292656950|ref|YP_003536847.1| - 3.5e-06 27.2 2.8 3e-05 24.2 0.1 3.4 3 1 0 3 3 3 1 PAS fold HTH_20 PF12840.7 gi|292656950|ref|YP_003536847.1| - 0.0018 18.3 0.7 0.005 16.9 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain GAF PF01590.26 gi|292656950|ref|YP_003536847.1| - 0.0083 16.8 0.0 0.02 15.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|292656950|ref|YP_003536847.1| - 0.046 13.2 0.0 0.046 13.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF436 PF04260.12 gi|292656950|ref|YP_003536847.1| - 0.09 12.4 0.1 0.21 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF436) DUF4974 PF16344.5 gi|292656950|ref|YP_003536847.1| - 0.12 12.4 0.0 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) MoaE PF02391.17 gi|292656950|ref|YP_003536847.1| - 0.2 12.0 1.9 0.61 10.4 0.9 2.4 3 1 0 3 3 2 0 MoaE protein Response_reg PF00072.24 gi|292656952|ref|YP_003536849.1| - 4.9e-18 65.3 0.0 7.4e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|292656952|ref|YP_003536849.1| - 7.6e-11 42.2 7.5 7.6e-11 42.2 7.5 2.3 2 0 0 2 2 2 1 HalX domain HTH_20 PF12840.7 gi|292656953|ref|YP_003536850.1| - 5.4e-09 36.0 0.1 7.9e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|292656953|ref|YP_003536850.1| - 3.3e-08 33.3 0.0 4.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|292656953|ref|YP_003536850.1| - 2.5e-07 30.4 0.0 4.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|292656953|ref|YP_003536850.1| - 1.6e-05 24.6 0.0 3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|292656953|ref|YP_003536850.1| - 4.8e-05 22.8 0.0 0.00015 21.2 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|292656953|ref|YP_003536850.1| - 0.00031 20.5 0.1 0.00053 19.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|292656953|ref|YP_003536850.1| - 0.0088 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|292656953|ref|YP_003536850.1| - 0.009 16.5 0.1 0.015 15.8 0.1 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_AsnC-type PF13404.6 gi|292656953|ref|YP_003536850.1| - 0.014 15.3 0.2 0.025 14.4 0.2 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|292656953|ref|YP_003536850.1| - 0.021 14.6 0.1 0.042 13.7 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|292656953|ref|YP_003536850.1| - 0.026 14.7 0.0 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LacI PF00356.21 gi|292656953|ref|YP_003536850.1| - 0.048 13.5 0.3 0.16 11.8 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_11 PF08279.12 gi|292656953|ref|YP_003536850.1| - 0.048 13.6 0.0 0.093 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 gi|292656953|ref|YP_003536850.1| - 0.074 12.8 0.1 0.27 11.1 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family PadR PF03551.14 gi|292656953|ref|YP_003536850.1| - 0.092 12.7 0.0 0.23 11.4 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family FUR PF01475.19 gi|292656953|ref|YP_003536850.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.20 gi|292656953|ref|YP_003536850.1| - 0.12 12.8 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator ArsR PF09824.9 gi|292656953|ref|YP_003536850.1| - 0.23 11.0 0.0 0.27 10.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HATPase_c PF02518.26 gi|292656954|ref|YP_003536851.1| - 2.6e-12 47.2 0.0 5.3e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_7TM PF16927.5 gi|292656954|ref|YP_003536851.1| - 4.4e-12 46.5 15.5 6.9e-12 45.9 15.5 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c_2 PF13581.6 gi|292656954|ref|YP_003536851.1| - 3e-06 27.2 0.2 9.1e-06 25.6 0.0 1.9 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|292656954|ref|YP_003536851.1| - 3.4e-05 23.7 0.1 0.00012 22.0 0.1 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|292656954|ref|YP_003536851.1| - 0.00069 19.9 0.4 0.0026 18.0 0.4 2.1 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|292656954|ref|YP_003536851.1| - 0.0014 18.7 0.0 0.0033 17.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|292656954|ref|YP_003536851.1| - 0.0022 18.2 0.0 0.0059 16.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|292656954|ref|YP_003536851.1| - 0.0022 17.8 0.0 0.0054 16.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|292656954|ref|YP_003536851.1| - 0.0044 16.6 0.7 0.014 15.0 0.7 1.9 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|292656954|ref|YP_003536851.1| - 0.042 14.0 0.1 0.27 11.4 0.1 2.4 1 1 0 1 1 1 0 PAS fold RDD PF06271.12 gi|292656955|ref|YP_003536852.1| - 3.9e-17 62.8 2.9 4.7e-17 62.5 2.9 1.0 1 0 0 1 1 1 1 RDD family DUF4010 PF13194.6 gi|292656956|ref|YP_003536853.1| - 7.6e-53 179.3 23.8 7.6e-53 179.3 23.8 3.1 4 0 0 4 4 4 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|292656956|ref|YP_003536853.1| - 1.8e-14 54.1 11.5 5.4e-10 39.7 2.7 4.8 3 1 1 4 4 4 2 MgtC family DsbB PF02600.16 gi|292656957|ref|YP_003536854.1| - 1.9e-16 60.8 7.1 5.9e-16 59.2 7.1 1.6 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Promethin PF16015.5 gi|292656957|ref|YP_003536854.1| - 0.034 14.1 0.4 0.034 14.1 0.4 2.0 2 1 0 2 2 2 0 Promethin FAD_binding_7 PF03441.14 gi|292656958|ref|YP_003536855.1| - 2.6e-62 209.9 1.5 3.6e-62 209.5 1.5 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|292656958|ref|YP_003536855.1| - 2e-42 145.0 0.0 9.4e-42 142.8 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase Usp PF00582.26 gi|292656958|ref|YP_003536855.1| - 0.01 16.3 0.5 0.019 15.5 0.1 1.6 2 0 0 2 2 2 0 Universal stress protein family SpoVR PF04293.13 gi|292656960|ref|YP_003536857.1| - 1.2e-90 304.2 6.6 2.3e-75 253.9 0.8 2.1 2 0 0 2 2 2 2 SpoVR like protein DUF444 PF04285.12 gi|292656961|ref|YP_003536858.1| - 7.2e-127 423.9 0.2 8.1e-127 423.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) DUF3738 PF12543.8 gi|292656961|ref|YP_003536858.1| - 0.14 12.3 0.1 0.94 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3738) PrkA PF06798.12 gi|292656962|ref|YP_003536859.1| - 5.2e-38 131.1 0.0 8.8e-38 130.4 0.0 1.3 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|292656962|ref|YP_003536859.1| - 1.3e-14 53.9 0.0 2.3e-11 43.2 0.0 2.9 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.12 gi|292656963|ref|YP_003536860.1| - 8e-68 228.8 7.2 8e-68 228.8 7.2 2.2 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|292656963|ref|YP_003536860.1| - 1.6e-62 211.5 0.0 2.8e-62 210.7 0.0 1.4 1 1 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|292656963|ref|YP_003536860.1| - 0.017 15.2 0.1 0.22 11.7 0.0 2.4 2 1 0 2 2 2 0 RasGAP C-terminus Rsa3 PF14615.6 gi|292656963|ref|YP_003536860.1| - 0.059 13.0 1.5 0.41 10.3 0.3 2.9 2 0 0 2 2 2 0 Ribosome-assembly protein 3 AAA_18 PF13238.6 gi|292656963|ref|YP_003536860.1| - 0.067 13.7 1.1 0.48 11.0 0.0 2.9 2 1 0 2 2 2 0 AAA domain Apolipoprotein PF01442.18 gi|292656963|ref|YP_003536860.1| - 0.09 12.6 2.3 1.5 8.6 0.2 2.7 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain LysM PF01476.20 gi|292656963|ref|YP_003536860.1| - 0.29 11.2 0.6 5.1 7.2 0.1 3.0 3 0 0 3 3 3 0 LysM domain UPF0179 PF03684.13 gi|292656965|ref|YP_003536862.1| - 8.7e-48 161.8 0.0 9.8e-48 161.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|292656965|ref|YP_003536862.1| - 0.023 14.9 0.3 0.069 13.4 0.0 1.8 2 0 0 2 2 2 0 Transposase DDE domain AstE_AspA PF04952.14 gi|292656966|ref|YP_003536863.1| - 6.2e-11 41.9 0.0 8.9e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|292656966|ref|YP_003536863.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic DUF309 PF03745.14 gi|292656967|ref|YP_003536864.1| - 2e-15 56.2 0.4 2.9e-15 55.7 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Aldo_ket_red PF00248.21 gi|292656967|ref|YP_003536864.1| - 0.05 12.8 0.0 0.072 12.3 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family JCAD PF15351.6 gi|292656968|ref|YP_003536865.1| - 0.0098 13.7 1.5 0.012 13.4 1.5 1.0 1 0 0 1 1 1 1 Junctional protein associated with coronary artery disease TPR_4 PF07721.14 gi|292656969|ref|YP_003536866.1| - 0.091 13.4 2.8 0.23 12.2 2.8 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF1771 PF08590.10 gi|292656969|ref|YP_003536866.1| - 0.1 13.0 0.4 0.25 11.8 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Inositol_P PF00459.25 gi|292656970|ref|YP_003536867.1| - 2.1e-48 165.2 1.3 2.5e-48 164.9 1.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF2388 PF09498.10 gi|292656970|ref|YP_003536867.1| - 0.061 13.3 0.5 0.31 11.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2388) HTH_AsnC-type PF13404.6 gi|292656971|ref|YP_003536868.1| - 8.7e-17 60.7 1.4 1.8e-16 59.7 1.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|292656971|ref|YP_003536868.1| - 1.2e-16 60.0 0.0 1.8e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|292656971|ref|YP_003536868.1| - 2.1e-15 56.4 0.0 3.3e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|292656971|ref|YP_003536868.1| - 3.8e-08 33.3 0.1 8.2e-08 32.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|292656971|ref|YP_003536868.1| - 2.3e-07 30.6 0.1 4e-06 26.6 0.0 2.3 2 1 0 2 2 2 1 MarR family MarR PF01047.22 gi|292656971|ref|YP_003536868.1| - 9.3e-06 25.5 0.0 2.2e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|292656971|ref|YP_003536868.1| - 2.1e-05 24.2 0.0 6.5e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|292656971|ref|YP_003536868.1| - 0.00061 20.2 0.1 0.0037 17.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|292656971|ref|YP_003536868.1| - 0.0025 17.7 0.0 0.0055 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|292656971|ref|YP_003536868.1| - 0.0026 17.2 1.3 1.2 8.7 0.0 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|292656971|ref|YP_003536868.1| - 0.0085 16.3 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|292656971|ref|YP_003536868.1| - 0.016 15.1 0.0 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|292656971|ref|YP_003536868.1| - 0.053 13.4 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|292656971|ref|YP_003536868.1| - 0.055 13.5 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|292656971|ref|YP_003536868.1| - 0.063 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2774 PF11242.8 gi|292656971|ref|YP_003536868.1| - 0.092 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) DUF63 PF01889.17 gi|292656972|ref|YP_003536869.1| - 7.5e-39 134.6 6.8 1.2e-37 130.6 6.5 2.2 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 YcaO PF02624.16 gi|292656973|ref|YP_003536870.1| - 2.1e-58 198.2 6.5 3.1e-58 197.6 6.5 1.3 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding SHMT PF00464.19 gi|292656975|ref|YP_003536872.1| - 1.2e-154 514.8 0.0 1.4e-154 514.6 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|292656975|ref|YP_003536872.1| - 2.5e-10 40.1 0.0 4.6e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|292656975|ref|YP_003536872.1| - 4.2e-06 26.3 0.0 8.4e-05 22.0 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase PhoU_div PF01865.16 gi|292656975|ref|YP_003536872.1| - 0.085 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 DegT_DnrJ_EryC1 PF01041.17 gi|292656975|ref|YP_003536872.1| - 0.16 11.3 0.6 0.25 10.6 0.6 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF211 PF02680.14 gi|292656976|ref|YP_003536873.1| - 7.2e-34 115.8 0.8 8.1e-34 115.7 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 VIT1 PF01988.19 gi|292656977|ref|YP_003536874.1| - 1.3e-09 38.2 7.9 1.3e-09 38.2 7.9 2.0 1 1 0 2 2 2 1 VIT family DUF4491 PF14898.6 gi|292656977|ref|YP_003536874.1| - 0.055 13.9 4.4 0.7 10.4 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4491) THF_DHG_CYH_C PF02882.19 gi|292656978|ref|YP_003536875.1| - 3.4e-67 224.7 2.3 4.7e-67 224.3 2.3 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|292656978|ref|YP_003536875.1| - 5.6e-38 129.8 0.1 8.5e-38 129.2 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GreA_GreB PF01272.19 gi|292656978|ref|YP_003536875.1| - 0.012 15.5 0.1 0.22 11.5 0.1 2.3 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term Glyco_trans_1_4 PF13692.6 gi|292656978|ref|YP_003536875.1| - 0.048 14.1 0.2 0.09 13.2 0.2 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 HypA PF01155.19 gi|292656980|ref|YP_003536877.1| - 0.00075 19.5 1.0 0.0014 18.7 1.0 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|292656980|ref|YP_003536877.1| - 0.031 14.3 0.4 0.1 12.7 0.6 1.8 2 0 0 2 2 2 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|292656980|ref|YP_003536877.1| - 0.064 12.8 1.1 0.13 11.8 1.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|292656980|ref|YP_003536877.1| - 0.091 12.8 1.1 0.16 12.0 1.1 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|292656980|ref|YP_003536877.1| - 0.11 12.7 1.4 0.24 11.5 1.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|292656980|ref|YP_003536877.1| - 1.7 8.7 5.7 2.9 8.0 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|292656980|ref|YP_003536877.1| - 3.5 7.6 6.1 9.1 6.2 1.7 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) PadR PF03551.14 gi|292656982|ref|YP_003536879.1| - 1.9e-17 63.0 2.4 2.3e-17 62.7 2.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|292656982|ref|YP_003536879.1| - 0.0016 18.2 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|292656982|ref|YP_003536879.1| - 0.013 15.4 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|292656982|ref|YP_003536879.1| - 0.019 15.5 0.3 0.033 14.7 0.3 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|292656982|ref|YP_003536879.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|292656982|ref|YP_003536879.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain AI-2E_transport PF01594.16 gi|292656983|ref|YP_003536880.1| - 1.7e-22 80.0 37.3 1.7e-21 76.7 37.3 2.0 1 1 0 1 1 1 1 AI-2E family transporter DUF2254 PF10011.9 gi|292656983|ref|YP_003536880.1| - 5.5 5.7 6.7 1.3 7.8 2.8 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) Aminotran_3 PF00202.21 gi|292656984|ref|YP_003536881.1| - 3.8e-77 259.6 0.0 1.5e-76 257.7 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III XPG_I PF00867.18 gi|292656986|ref|YP_003536883.1| - 8e-24 83.8 0.0 1.6e-23 82.9 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|292656986|ref|YP_003536883.1| - 9.2e-13 48.5 0.0 1.5e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|292656986|ref|YP_003536883.1| - 1e-05 26.0 0.1 5.2e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|292656986|ref|YP_003536883.1| - 0.0036 17.2 0.0 0.0083 16.0 0.0 1.8 2 1 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain Acetyltransf_10 PF13673.7 gi|292656987|ref|YP_003536884.1| - 0.0032 17.4 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292656987|ref|YP_003536884.1| - 0.0038 17.5 0.0 0.0065 16.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Methyltransf_11 PF08241.12 gi|292656988|ref|YP_003536885.1| - 4.4e-18 65.7 0.1 7.2e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|292656988|ref|YP_003536885.1| - 2.3e-15 57.1 0.1 3.8e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|292656988|ref|YP_003536885.1| - 1.4e-10 41.1 0.0 1.7e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|292656988|ref|YP_003536885.1| - 9.5e-10 38.2 0.0 1.8e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|292656988|ref|YP_003536885.1| - 1.8e-08 34.4 0.0 2.6e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|292656988|ref|YP_003536885.1| - 4.3e-08 33.8 0.0 7.1e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|292656988|ref|YP_003536885.1| - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|292656988|ref|YP_003536885.1| - 0.0055 16.3 0.0 0.0081 15.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF3054 PF11255.8 gi|292656989|ref|YP_003536886.1| - 2.1e-24 86.1 10.7 2.5e-24 85.9 10.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) PDEase_I_N PF08499.12 gi|292656989|ref|YP_003536886.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal MFS_1 PF07690.16 gi|292656990|ref|YP_003536887.1| - 1.3e-27 96.7 61.6 3.9e-19 68.8 28.9 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|292656990|ref|YP_003536887.1| - 0.031 13.2 25.6 0.0086 15.0 10.8 2.6 3 0 0 3 3 3 0 Sugar (and other) transporter MFS_3 PF05977.13 gi|292656990|ref|YP_003536887.1| - 4.4 5.6 23.7 0.16 10.3 6.7 2.7 2 1 0 2 2 2 0 Transmembrane secretion effector OCD_Mu_crystall PF02423.15 gi|292656992|ref|YP_003536889.1| - 3.1e-68 230.1 1.4 3.6e-68 229.9 1.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|292656992|ref|YP_003536889.1| - 0.00064 20.2 0.1 0.0014 19.2 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|292656992|ref|YP_003536889.1| - 0.0064 16.6 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase eRF1_1 PF03463.15 gi|292656993|ref|YP_003536890.1| - 2.2e-28 98.8 0.1 3.2e-28 98.3 0.1 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|292656993|ref|YP_003536890.1| - 3.7e-24 85.4 0.1 3.7e-24 85.4 0.1 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|292656993|ref|YP_003536890.1| - 1.3e-05 25.6 0.0 9.1e-05 22.8 0.0 2.2 1 1 0 1 1 1 1 eRF1 domain 2 DUF3892 PF13031.6 gi|292656993|ref|YP_003536890.1| - 0.091 13.4 1.2 12 6.6 0.1 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3892) DUF4013 PF13197.6 gi|292656994|ref|YP_003536891.1| - 1.5e-31 109.5 16.7 1.5e-31 109.5 16.7 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Sensor PF13796.6 gi|292656994|ref|YP_003536891.1| - 0.0056 16.7 19.5 0.076 13.1 0.4 2.7 2 1 0 2 2 2 2 Putative sensor DUF4017 PF13209.6 gi|292656994|ref|YP_003536891.1| - 0.86 9.6 12.4 3 7.8 2.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4017) DUF4013 PF13197.6 gi|292656995|ref|YP_003536892.1| - 1.1e-39 136.0 18.7 1.1e-39 136.0 18.7 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Man-6-P_recep PF02157.15 gi|292656995|ref|YP_003536892.1| - 0.036 13.2 0.0 0.08 12.0 0.0 1.5 1 0 0 1 1 1 0 Mannose-6-phosphate receptor EI24 PF07264.11 gi|292656995|ref|YP_003536892.1| - 0.063 13.5 21.8 0.28 11.4 21.8 1.8 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) XhlA PF10779.9 gi|292656995|ref|YP_003536892.1| - 2.1 8.6 0.0 2.1 8.6 0.0 2.6 3 0 0 3 3 3 0 Haemolysin XhlA FbpA PF05833.11 gi|292656996|ref|YP_003536893.1| - 6.6e-89 298.8 0.0 8.6e-89 298.4 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|292656996|ref|YP_003536893.1| - 1.4e-23 83.6 0.0 2.7e-23 82.7 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|292656996|ref|YP_003536893.1| - 0.00022 21.4 0.0 0.00068 19.8 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain SDF PF00375.18 gi|292656998|ref|YP_003536895.1| - 2.9e-111 372.2 37.3 3.3e-111 372.0 37.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Acetyltransf_10 PF13673.7 gi|292656999|ref|YP_003536896.1| - 7.9e-23 80.8 0.0 9.2e-23 80.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292656999|ref|YP_003536896.1| - 3.2e-14 53.2 0.1 3.8e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|292656999|ref|YP_003536896.1| - 2.7e-11 43.7 0.2 4.5e-11 43.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|292656999|ref|YP_003536896.1| - 2.9e-07 30.6 0.6 2.3e-06 27.7 0.6 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292656999|ref|YP_003536896.1| - 5.4e-07 29.5 0.0 7.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|292656999|ref|YP_003536896.1| - 0.0011 19.1 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|292656999|ref|YP_003536896.1| - 0.2 11.8 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MS_channel PF00924.18 gi|292657000|ref|YP_003536897.1| - 2.8e-45 154.4 0.0 5.4e-45 153.5 0.0 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel PRA1 PF03208.19 gi|292657000|ref|YP_003536897.1| - 6.8 6.3 7.7 0.78 9.4 1.2 2.3 1 1 1 2 2 2 0 PRA1 family protein Radical_SAM PF04055.21 gi|292657001|ref|YP_003536898.1| - 5e-25 88.8 0.0 1.1e-24 87.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|292657001|ref|YP_003536898.1| - 4.8e-24 84.2 0.1 9.5e-24 83.2 0.1 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|292657001|ref|YP_003536898.1| - 4.4e-07 30.2 0.1 1e-06 28.9 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|292657001|ref|YP_003536898.1| - 5.7e-05 23.1 0.1 0.00015 21.7 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292657001|ref|YP_003536898.1| - 0.055 13.9 0.1 0.11 13.0 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain tRNA_anti-codon PF01336.25 gi|292657002|ref|YP_003536899.1| - 3.7e-11 42.9 0.1 7.9e-11 41.8 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|292657002|ref|YP_003536899.1| - 7.2e-08 32.7 0.1 2.8e-07 30.8 0.0 2.1 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|292657002|ref|YP_003536899.1| - 0.00015 21.9 0.0 0.00045 20.4 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Prp19 PF08606.11 gi|292657002|ref|YP_003536899.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Prp19/Pso4-like RAP1 PF07218.11 gi|292657002|ref|YP_003536899.1| - 0.17 10.2 4.5 0.23 9.7 4.5 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) HAS-barrel PF09378.10 gi|292657002|ref|YP_003536899.1| - 1 9.5 4.9 2.7 8.2 0.3 2.8 1 1 0 2 2 2 0 HAS barrel domain SDA1 PF05285.12 gi|292657002|ref|YP_003536899.1| - 5.3 6.4 16.0 10 5.5 16.0 1.5 1 0 0 1 1 1 0 SDA1 Trypan_PARP PF05887.11 gi|292657002|ref|YP_003536899.1| - 7.3 6.6 37.4 2.4 8.2 23.1 2.4 1 1 2 3 3 3 0 Procyclic acidic repetitive protein (PARP) Yip1 PF04893.17 gi|292657003|ref|YP_003536900.1| - 1.1e-11 44.8 14.3 1.5e-11 44.4 14.3 1.2 1 0 0 1 1 1 1 Yip1 domain TK PF00265.18 gi|292657004|ref|YP_003536901.1| - 1e-48 165.5 0.0 1.2e-48 165.4 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase Trehalose_PPase PF02358.16 gi|292657004|ref|YP_003536901.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Trehalose-phosphatase AAA_30 PF13604.6 gi|292657004|ref|YP_003536901.1| - 0.19 11.4 0.3 0.5 10.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain FMN_red PF03358.15 gi|292657005|ref|YP_003536902.1| - 1.1e-32 113.0 0.0 1.4e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|292657005|ref|YP_003536902.1| - 6.5e-07 29.3 0.0 9.2e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DrsE PF02635.15 gi|292657006|ref|YP_003536903.1| - 3.2e-12 46.9 0.0 3.6e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|292657006|ref|YP_003536903.1| - 0.24 11.3 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family HTH_10 PF04967.12 gi|292657007|ref|YP_003536904.1| - 3.1e-15 55.7 0.1 4.7e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.6 gi|292657007|ref|YP_003536904.1| - 0.18 11.6 0.0 3.8 7.4 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain Abhydrolase_1 PF00561.20 gi|292657008|ref|YP_003536905.1| - 1.6e-12 47.6 0.0 3.1e-11 43.4 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|292657008|ref|YP_003536905.1| - 8.7e-12 46.1 15.3 1.1e-11 45.8 15.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|292657008|ref|YP_003536905.1| - 5.8e-05 22.5 0.0 0.00013 21.4 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 HhH-GPD PF00730.25 gi|292657009|ref|YP_003536906.1| - 5.5e-16 59.0 0.0 7.8e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|292657009|ref|YP_003536906.1| - 5.2e-08 32.4 0.0 1.1e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif BolA PF01722.18 gi|292657012|ref|YP_003536909.1| - 8.3e-20 70.8 0.2 9.6e-20 70.6 0.2 1.1 1 0 0 1 1 1 1 BolA-like protein Lyase_1 PF00206.20 gi|292657013|ref|YP_003536910.1| - 4.9e-106 354.6 0.0 7.7e-106 354.0 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|292657013|ref|YP_003536910.1| - 1.7e-24 85.9 0.3 4.7e-24 84.5 0.3 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus RNA_POL_M_15KD PF02150.16 gi|292657014|ref|YP_003536911.1| - 0.0057 16.5 1.5 0.05 13.5 0.0 2.1 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.10 gi|292657014|ref|YP_003536911.1| - 0.0076 15.9 0.2 1.6 8.5 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|292657014|ref|YP_003536911.1| - 0.01 16.0 0.8 0.015 15.4 0.8 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|292657014|ref|YP_003536911.1| - 0.024 14.4 0.4 0.028 14.1 0.4 1.3 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf_UBZ PF18439.1 gi|292657014|ref|YP_003536911.1| - 0.03 13.9 1.0 1.5 8.5 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF3039 PF11238.8 gi|292657014|ref|YP_003536911.1| - 0.035 13.9 0.6 0.043 13.6 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) PHD PF00628.29 gi|292657014|ref|YP_003536911.1| - 0.039 13.9 2.8 1.4 8.9 2.8 2.0 1 1 0 1 1 1 0 PHD-finger TackOD1 PF18551.1 gi|292657014|ref|YP_003536911.1| - 0.039 13.6 0.1 0.04 13.6 0.1 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|292657014|ref|YP_003536911.1| - 0.05 13.5 1.2 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|292657014|ref|YP_003536911.1| - 0.058 13.5 4.6 3.3 7.9 1.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|292657014|ref|YP_003536911.1| - 0.077 13.0 0.2 0.081 13.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|292657014|ref|YP_003536911.1| - 0.096 13.0 0.5 0.14 12.5 0.5 1.3 1 1 0 1 1 1 0 C1 domain zf-C2H2_4 PF13894.6 gi|292657014|ref|YP_003536911.1| - 0.18 12.7 0.3 23 6.2 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|292657014|ref|YP_003536911.1| - 0.32 11.6 1.7 20 5.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|292657014|ref|YP_003536911.1| - 0.4 10.2 5.0 26 4.4 0.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|292657014|ref|YP_003536911.1| - 0.48 10.4 0.3 0.48 10.4 0.3 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain GatB_N PF02934.15 gi|292657015|ref|YP_003536912.1| - 2.9e-65 220.4 0.0 3.8e-65 220.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|292657015|ref|YP_003536912.1| - 8.7e-25 87.3 0.1 1.7e-24 86.4 0.1 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|292657015|ref|YP_003536912.1| - 3.6e-15 56.0 0.0 8.5e-15 54.8 0.0 1.7 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|292657015|ref|YP_003536912.1| - 0.00085 19.4 2.2 0.00088 19.4 0.6 1.8 2 0 0 2 2 2 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|292657015|ref|YP_003536912.1| - 0.035 14.1 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 DUF2999 PF11212.8 gi|292657015|ref|YP_003536912.1| - 0.073 13.4 0.0 0.28 11.5 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) Peptidase_M48 PF01435.18 gi|292657017|ref|YP_003536914.1| - 2.2e-24 86.3 0.0 9.6e-24 84.2 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|292657017|ref|YP_003536914.1| - 2.5e-05 23.6 0.2 5.6e-05 22.5 0.0 1.7 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|292657017|ref|YP_003536914.1| - 0.061 13.6 0.1 0.27 11.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) FTR1 PF03239.14 gi|292657017|ref|YP_003536914.1| - 0.91 8.6 4.4 0.24 10.5 1.6 1.5 2 0 0 2 2 2 0 Iron permease FTR1 family Phage_holin_3_6 PF07332.11 gi|292657017|ref|YP_003536914.1| - 8.9 6.4 12.6 6.1 6.9 5.9 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III MaoC_dehydratas PF01575.19 gi|292657018|ref|YP_003536915.1| - 2.1e-15 56.4 0.0 2.7e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|292657018|ref|YP_003536915.1| - 0.0009 19.4 0.1 0.0013 18.9 0.1 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase SpoU_methylase PF00588.19 gi|292657019|ref|YP_003536916.1| - 9.5e-31 106.9 0.0 1.4e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Pterin_bind PF00809.22 gi|292657021|ref|YP_003536918.1| - 2.3e-37 129.0 0.0 3.9e-37 128.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.18 gi|292657022|ref|YP_003536919.1| - 9.3e-16 58.0 0.0 1.3e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Lar_restr_allev PF14354.6 gi|292657023|ref|YP_003536920.1| - 0.12 12.8 0.9 0.22 11.9 0.9 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar FAD_binding_7 PF03441.14 gi|292657024|ref|YP_003536921.1| - 4.8e-81 271.1 1.7 6.4e-81 270.7 1.7 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|292657024|ref|YP_003536921.1| - 7.3e-41 139.9 0.1 3.1e-40 137.8 0.0 1.9 2 0 0 2 2 2 1 DNA photolyase DJ-1_PfpI PF01965.24 gi|292657025|ref|YP_003536922.1| - 3.4e-27 95.3 0.2 4.5e-27 94.9 0.2 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|292657025|ref|YP_003536922.1| - 0.0017 18.0 0.0 0.0044 16.6 0.0 1.5 1 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Sod_Fe_N PF00081.22 gi|292657026|ref|YP_003536923.1| - 2e-31 108.3 1.2 3.3e-31 107.6 1.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|292657026|ref|YP_003536923.1| - 2.8e-27 94.9 0.0 4.6e-27 94.2 0.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain EAGR_box PF16713.5 gi|292657027|ref|YP_003536924.1| - 0.089 12.5 0.3 0.59 9.9 0.0 2.5 3 0 0 3 3 3 0 Enriched in aromatic and glycine Residues box adh_short_C2 PF13561.6 gi|292657029|ref|YP_003536926.1| - 1.3e-76 257.3 1.9 1.4e-76 257.1 1.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|292657029|ref|YP_003536926.1| - 8.9e-60 201.5 1.0 1.1e-59 201.2 1.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|292657029|ref|YP_003536926.1| - 7e-13 48.9 0.7 9.9e-13 48.4 0.7 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|292657029|ref|YP_003536926.1| - 3.1e-05 23.6 0.1 9e-05 22.0 0.1 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family PALP PF00291.25 gi|292657029|ref|YP_003536926.1| - 0.0044 16.5 0.8 0.0044 16.5 0.8 1.5 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.18 gi|292657029|ref|YP_003536926.1| - 0.053 13.4 0.7 0.083 12.8 0.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lactamase_B PF00753.27 gi|292657030|ref|YP_003536927.1| - 3.2e-17 63.2 10.6 3.1e-15 56.7 10.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|292657030|ref|YP_003536927.1| - 7.4e-06 25.6 1.1 1.4e-05 24.7 1.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|292657030|ref|YP_003536927.1| - 0.19 11.2 0.0 0.25 10.8 0.0 1.1 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Thymidylat_synt PF00303.19 gi|292657031|ref|YP_003536928.1| - 5.1e-91 304.5 0.0 6.4e-91 304.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.19 gi|292657032|ref|YP_003536929.1| - 1.5e-48 164.6 0.0 1.8e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase DUF4177 PF13783.6 gi|292657033|ref|YP_003536930.1| - 1.2e-14 54.3 0.0 1.4e-14 54.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF1508 PF07411.12 gi|292657035|ref|YP_003536932.1| - 9.7e-24 83.0 0.4 1.1e-23 82.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Proteasome PF00227.26 gi|292657036|ref|YP_003536933.1| - 1.4e-52 178.0 0.0 1.8e-52 177.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|292657036|ref|YP_003536933.1| - 3.6e-12 45.7 0.7 5.5e-12 45.1 0.1 1.6 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature MOSC_N PF03476.16 gi|292657037|ref|YP_003536934.1| - 5e-12 45.7 0.0 1.8e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|292657037|ref|YP_003536934.1| - 1.2e-08 35.0 0.0 2.6e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 MOSC domain Amidohydro_1 PF01979.20 gi|292657039|ref|YP_003536936.1| - 2.8e-37 128.8 1.0 3.3e-37 128.6 1.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|292657039|ref|YP_003536936.1| - 4.5e-19 69.3 7.6 6.1e-19 68.8 7.6 1.2 1 0 0 1 1 1 1 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|292657039|ref|YP_003536936.1| - 0.061 12.8 1.5 0.27 10.6 0.2 2.4 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel HTH_10 PF04967.12 gi|292657040|ref|YP_003536937.1| - 1.1e-12 47.6 0.0 2e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|292657040|ref|YP_003536937.1| - 0.0034 17.2 0.0 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|292657040|ref|YP_003536937.1| - 0.0037 17.1 0.1 0.0075 16.1 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|292657040|ref|YP_003536937.1| - 0.032 14.3 0.0 0.1 12.7 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|292657040|ref|YP_003536937.1| - 0.098 12.2 0.0 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|292657040|ref|YP_003536937.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Amidohydro_1 PF01979.20 gi|292657041|ref|YP_003536938.1| - 3.4e-63 214.0 0.4 4.1e-63 213.8 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|292657041|ref|YP_003536938.1| - 2e-12 47.3 0.8 2e-12 47.3 0.8 2.1 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|292657041|ref|YP_003536938.1| - 5.6e-05 22.6 0.0 9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Acetyltransf_4 PF13420.7 gi|292657042|ref|YP_003536939.1| - 9.6e-35 120.0 0.0 1.1e-34 119.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|292657042|ref|YP_003536939.1| - 1.5e-15 57.5 0.0 2.1e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|292657042|ref|YP_003536939.1| - 3.1e-11 44.1 0.0 4.4e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|292657042|ref|YP_003536939.1| - 7.7e-10 38.8 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|292657042|ref|YP_003536939.1| - 4e-09 36.8 0.0 6.1e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|292657042|ref|YP_003536939.1| - 3.4e-07 30.1 0.0 5.3e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|292657042|ref|YP_003536939.1| - 0.0003 20.9 0.1 0.00055 20.0 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|292657042|ref|YP_003536939.1| - 0.015 14.8 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|292657042|ref|YP_003536939.1| - 0.022 14.9 0.0 0.034 14.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MMR_HSR1_C PF08438.10 gi|292657044|ref|YP_003536941.1| - 2.6e-30 105.3 0.0 4.9e-30 104.4 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|292657044|ref|YP_003536941.1| - 6.4e-21 74.6 0.0 1.9e-19 69.8 0.0 2.6 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|292657044|ref|YP_003536941.1| - 3.2e-09 36.7 0.0 6.7e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|292657044|ref|YP_003536941.1| - 1.8e-05 24.3 0.0 0.00043 19.9 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|292657044|ref|YP_003536941.1| - 0.0061 16.6 0.0 0.51 10.4 0.0 2.9 3 0 0 3 3 3 1 Dynamin family GTP_EFTU PF00009.27 gi|292657044|ref|YP_003536941.1| - 0.019 14.5 0.0 0.043 13.3 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain PhetRS_B1 PF18262.1 gi|292657044|ref|YP_003536941.1| - 0.021 15.0 0.2 0.051 13.8 0.2 1.6 1 0 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain Roc PF08477.13 gi|292657044|ref|YP_003536941.1| - 0.049 13.9 0.0 0.8 9.9 0.0 2.5 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|292657044|ref|YP_003536941.1| - 0.051 13.2 0.1 8.7 5.9 0.1 2.3 2 0 0 2 2 2 0 Ras family NOG1 PF06858.14 gi|292657044|ref|YP_003536941.1| - 0.26 11.1 0.7 1 9.2 0.0 2.3 3 0 0 3 3 3 0 Nucleolar GTP-binding protein 1 (NOG1) YtkA PF13115.6 gi|292657047|ref|YP_003536944.1| - 0.00045 20.8 4.1 0.017 15.7 0.5 2.9 2 1 0 2 2 2 2 YtkA-like Bile_Hydr_Trans PF04775.14 gi|292657047|ref|YP_003536944.1| - 0.0045 17.0 0.7 2 8.5 0.1 2.6 3 0 0 3 3 3 2 Acyl-CoA thioester hydrolase/BAAT N-terminal region CarboxypepD_reg PF13620.6 gi|292657047|ref|YP_003536944.1| - 0.039 14.2 24.5 0.098 12.9 5.4 2.6 1 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF3244 PF11589.8 gi|292657047|ref|YP_003536944.1| - 0.25 11.5 5.5 8.8 6.5 0.1 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF3244) Sigma70_ner PF04546.13 gi|292657047|ref|YP_003536944.1| - 2.2 8.1 3.9 3 7.7 3.9 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region Peptidase_C25_C PF03785.14 gi|292657047|ref|YP_003536944.1| - 9.9 6.1 13.5 1.7 8.5 7.5 2.7 2 1 1 3 3 3 0 Peptidase family C25, C terminal ig-like domain MC1 PF05854.11 gi|292657049|ref|YP_003536946.1| - 1.1e-45 153.9 0.3 1.3e-45 153.7 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.10 gi|292657050|ref|YP_003536947.1| - 0.0022 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|292657050|ref|YP_003536947.1| - 0.014 15.3 0.2 0.021 14.8 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DHO_dh PF01180.21 gi|292657051|ref|YP_003536948.1| - 4.2e-82 275.7 0.0 4.9e-82 275.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|292657051|ref|YP_003536948.1| - 0.00067 19.2 0.1 0.0017 17.8 0.1 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|292657051|ref|YP_003536948.1| - 0.052 13.0 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein bPH_2 PF03703.14 gi|292657052|ref|YP_003536949.1| - 0.16 12.2 0.0 0.39 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial PH domain tRNA-synt_1 PF00133.22 gi|292657053|ref|YP_003536950.1| - 4e-132 441.5 0.1 1.1e-130 436.8 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|292657053|ref|YP_003536950.1| - 6.8e-32 110.5 0.2 1.5e-31 109.4 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|292657053|ref|YP_003536950.1| - 5.9e-22 77.9 0.1 1.1e-10 40.8 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|292657053|ref|YP_003536950.1| - 2.6e-06 27.1 0.0 5.7e-05 22.7 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|292657053|ref|YP_003536950.1| - 2.7e-06 26.9 0.0 0.0021 17.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|292657053|ref|YP_003536950.1| - 0.00046 19.2 0.0 0.0074 15.2 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|292657053|ref|YP_003536950.1| - 0.025 14.7 5.2 0.13 12.4 0.7 2.8 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|292657053|ref|YP_003536950.1| - 0.073 13.1 0.5 6.3 6.9 0.1 2.5 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|292657053|ref|YP_003536950.1| - 0.34 10.5 2.7 10 5.8 0.0 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|292657053|ref|YP_003536950.1| - 0.54 10.4 4.8 11 6.2 0.3 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_Met_Meta_PP PF01053.20 gi|292657054|ref|YP_003536951.1| - 2.7e-139 464.0 0.0 3e-139 463.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|292657054|ref|YP_003536951.1| - 9.9e-12 44.8 2.9 2.2e-09 37.1 0.6 2.9 2 1 1 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|292657054|ref|YP_003536951.1| - 7.7e-06 25.1 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|292657054|ref|YP_003536951.1| - 8.5e-06 24.5 0.0 7.5e-05 21.4 0.0 1.9 1 1 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.21 gi|292657054|ref|YP_003536951.1| - 8.4e-05 21.9 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|292657054|ref|YP_003536951.1| - 0.00021 20.7 0.3 0.00039 19.8 0.3 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase tRNA_synthFbeta PF17759.1 gi|292657055|ref|YP_003536952.1| - 3.3e-41 141.1 0.0 5.2e-41 140.4 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|292657055|ref|YP_003536952.1| - 2.3e-16 59.8 0.1 6.3e-15 55.2 0.2 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|292657055|ref|YP_003536952.1| - 1.6e-11 44.2 0.0 2.6e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|292657055|ref|YP_003536952.1| - 7.3e-09 35.7 0.4 8e-05 22.8 0.0 3.1 2 1 0 2 2 2 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|292657055|ref|YP_003536952.1| - 0.00049 19.7 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phage_int_SAM_1 PF02899.17 gi|292657055|ref|YP_003536952.1| - 0.066 13.5 0.2 0.16 12.3 0.2 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain tRNA-synt_2d PF01409.20 gi|292657056|ref|YP_003536953.1| - 1.4e-78 263.8 0.0 1.7e-78 263.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|292657056|ref|YP_003536953.1| - 0.00019 20.6 0.4 0.023 13.8 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|292657056|ref|YP_003536953.1| - 0.014 14.8 0.0 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain MarR_2 PF12802.7 gi|292657056|ref|YP_003536953.1| - 0.016 15.1 0.9 0.053 13.4 0.2 2.2 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.19 gi|292657056|ref|YP_003536953.1| - 0.12 12.5 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DAO PF01266.24 gi|292657057|ref|YP_003536954.1| - 1.8e-53 182.4 11.7 3.6e-34 118.9 3.3 2.0 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|292657057|ref|YP_003536954.1| - 1e-06 28.9 2.5 2.7e-06 27.5 2.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|292657057|ref|YP_003536954.1| - 8.3e-06 26.3 1.8 2.3e-05 24.9 1.8 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|292657057|ref|YP_003536954.1| - 1.6e-05 24.2 7.2 2.9e-05 23.4 7.2 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|292657057|ref|YP_003536954.1| - 0.00016 21.2 1.4 0.00019 20.9 1.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|292657057|ref|YP_003536954.1| - 0.00021 20.7 0.9 0.00037 19.8 0.9 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|292657057|ref|YP_003536954.1| - 0.0044 16.3 2.1 0.0071 15.7 2.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|292657057|ref|YP_003536954.1| - 0.0075 15.5 0.5 0.01 15.1 0.5 1.2 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|292657057|ref|YP_003536954.1| - 0.014 15.8 0.8 0.028 14.9 0.8 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|292657057|ref|YP_003536954.1| - 0.025 13.3 2.6 0.037 12.7 2.6 1.2 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|292657057|ref|YP_003536954.1| - 0.13 11.5 5.9 0.19 11.0 5.9 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|292657057|ref|YP_003536954.1| - 0.23 10.7 4.8 0.41 9.8 4.8 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|292657057|ref|YP_003536954.1| - 0.3 10.7 2.6 0.51 9.9 2.6 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.21 gi|292657057|ref|YP_003536954.1| - 0.41 10.7 1.7 0.76 9.8 1.7 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|292657057|ref|YP_003536954.1| - 0.42 10.5 2.6 0.76 9.6 2.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|292657057|ref|YP_003536954.1| - 0.64 9.7 2.3 2.5 7.7 2.9 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 gi|292657057|ref|YP_003536954.1| - 0.65 8.8 2.9 0.99 8.2 2.9 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.22 gi|292657057|ref|YP_003536954.1| - 4.5 6.2 5.7 6 5.8 5.7 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A OCD_Mu_crystall PF02423.15 gi|292657058|ref|YP_003536955.1| - 2.9e-63 213.7 0.6 5e-60 203.1 0.6 2.0 1 1 0 2 2 2 2 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|292657058|ref|YP_003536955.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CarboxypepD_reg PF13620.6 gi|292657058|ref|YP_003536955.1| - 3.5 8.0 8.8 4.2 7.7 0.2 2.9 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain tRNA-synt_1b PF00579.25 gi|292657059|ref|YP_003536956.1| - 2.1e-39 135.6 0.0 6.2e-23 81.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Nitro_FeMo-Co PF02579.17 gi|292657059|ref|YP_003536956.1| - 0.018 15.3 0.1 0.049 14.0 0.0 1.8 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor tRNA_int_endo PF01974.17 gi|292657060|ref|YP_003536957.1| - 2.2e-32 110.9 0.9 1.2e-25 89.4 0.0 3.9 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|292657060|ref|YP_003536957.1| - 3.7e-27 93.8 0.0 7.3e-13 48.0 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Auto_anti-p27 PF06677.12 gi|292657061|ref|YP_003536958.1| - 2.6e-08 33.9 7.6 1.3e-05 25.2 0.1 3.8 4 0 0 4 4 4 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|292657061|ref|YP_003536958.1| - 6.4e-08 32.2 1.1 2.5e-06 27.1 0.1 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger NucS PF01939.16 gi|292657061|ref|YP_003536958.1| - 1.4e-07 31.1 0.0 1.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS zf-ribbon_3 PF13248.6 gi|292657061|ref|YP_003536958.1| - 0.011 15.2 1.6 2.9 7.4 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|292657061|ref|YP_003536958.1| - 0.025 14.5 1.4 2.3 8.3 0.1 2.9 3 0 0 3 3 3 0 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.12 gi|292657061|ref|YP_003536958.1| - 0.037 14.0 0.6 0.14 12.1 0.3 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|292657061|ref|YP_003536958.1| - 0.04 14.0 2.6 6.7 6.9 0.1 3.3 4 0 0 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|292657061|ref|YP_003536958.1| - 0.11 12.6 1.3 3.6 7.8 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HAD_2 PF13419.6 gi|292657062|ref|YP_003536959.1| - 9e-29 100.8 0.0 1e-28 100.6 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292657062|ref|YP_003536959.1| - 3.7e-17 63.3 0.1 7.1e-16 59.1 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|292657062|ref|YP_003536959.1| - 2.1e-10 40.5 0.0 5.6e-10 39.1 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|292657062|ref|YP_003536959.1| - 1.7e-08 35.1 0.2 2.4e-08 34.6 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|292657062|ref|YP_003536959.1| - 0.0023 18.0 0.1 0.036 14.2 0.1 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase CIDE-N PF02017.15 gi|292657062|ref|YP_003536959.1| - 0.13 12.3 0.7 7.5 6.7 0.0 2.9 3 0 0 3 3 3 0 CIDE-N domain DEAD PF00270.29 gi|292657063|ref|YP_003536960.1| - 1.4e-25 90.1 0.0 1.5e-24 86.7 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|292657063|ref|YP_003536960.1| - 4.1e-18 65.5 0.0 5.5e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|292657063|ref|YP_003536960.1| - 5.8e-11 42.7 0.0 9.1e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|292657063|ref|YP_003536960.1| - 2.6e-09 37.5 0.8 2.6e-09 37.5 0.8 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|292657063|ref|YP_003536960.1| - 2.7e-08 34.1 0.0 1.3e-07 31.9 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|292657063|ref|YP_003536960.1| - 0.043 13.7 0.3 0.17 11.7 0.0 2.2 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda TrmB PF01978.19 gi|292657063|ref|YP_003536960.1| - 0.15 12.0 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Radical_SAM PF04055.21 gi|292657065|ref|YP_003536962.1| - 3.4e-14 53.6 0.0 5.6e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|292657065|ref|YP_003536962.1| - 3.5e-10 40.2 0.1 1.1e-09 38.7 0.1 1.8 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|292657065|ref|YP_003536962.1| - 0.12 12.4 0.2 2.3 8.3 0.0 2.5 1 1 2 3 3 3 0 B12 binding domain DUF2090 PF09863.9 gi|292657065|ref|YP_003536962.1| - 0.13 11.3 0.0 15 4.5 0.0 2.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2090) E1_dh PF00676.20 gi|292657066|ref|YP_003536963.1| - 3.1e-87 292.3 0.0 3.7e-87 292.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|292657066|ref|YP_003536963.1| - 9e-06 25.1 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|292657066|ref|YP_003536963.1| - 0.00068 19.4 0.0 0.0047 16.7 0.0 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|292657066|ref|YP_003536963.1| - 0.0014 17.6 0.0 0.0024 16.9 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|292657066|ref|YP_003536963.1| - 0.035 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain BPL_C PF02237.17 gi|292657066|ref|YP_003536963.1| - 0.21 11.5 2.8 0.23 11.4 1.0 2.0 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain Transket_pyr PF02779.24 gi|292657067|ref|YP_003536964.1| - 2.3e-46 157.7 0.0 3.2e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|292657067|ref|YP_003536964.1| - 3.4e-40 136.8 0.1 5.6e-40 136.1 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|292657067|ref|YP_003536964.1| - 6e-05 23.3 0.1 0.0001 22.6 0.1 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 gi|292657068|ref|YP_003536965.1| - 1.6e-91 305.9 0.0 2e-91 305.6 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|292657068|ref|YP_003536965.1| - 2.4e-24 85.0 1.9 5e-24 83.9 1.9 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|292657068|ref|YP_003536965.1| - 8.1e-22 77.3 3.2 9.7e-16 57.8 0.6 2.7 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|292657068|ref|YP_003536965.1| - 1.1e-07 31.5 6.0 0.00018 21.3 0.2 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|292657068|ref|YP_003536965.1| - 8.7e-05 23.2 4.4 0.00018 22.1 0.2 3.0 2 1 1 3 3 3 1 HlyD family secretion protein GCV_H PF01597.19 gi|292657068|ref|YP_003536965.1| - 0.0021 17.9 0.2 0.0061 16.4 0.2 1.8 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_D23 PF16576.5 gi|292657068|ref|YP_003536965.1| - 0.012 14.8 0.5 0.064 12.5 0.0 2.3 2 1 1 3 3 3 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|292657068|ref|YP_003536965.1| - 0.057 13.4 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab_Xtn PF16886.5 gi|292657068|ref|YP_003536965.1| - 0.092 12.6 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension NQRA PF05896.11 gi|292657068|ref|YP_003536965.1| - 0.15 11.5 0.1 0.27 10.6 0.1 1.4 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Phage_GPD PF05954.11 gi|292657068|ref|YP_003536965.1| - 0.94 8.7 7.0 2.9 7.1 7.0 1.7 2 0 0 2 2 2 0 Phage late control gene D protein (GPD) Pyr_redox_2 PF07992.14 gi|292657069|ref|YP_003536966.1| - 2.1e-70 237.3 4.6 2.1e-70 237.3 4.6 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|292657069|ref|YP_003536966.1| - 2.3e-38 130.8 2.9 3.1e-38 130.4 1.3 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|292657069|ref|YP_003536966.1| - 6.7e-22 77.8 3.4 4.5e-20 72.0 0.6 3.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|292657069|ref|YP_003536966.1| - 1e-14 54.5 0.6 1.1e-08 34.7 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|292657069|ref|YP_003536966.1| - 3.8e-10 39.4 6.0 4.4e-07 29.3 3.6 2.7 2 1 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|292657069|ref|YP_003536966.1| - 1.1e-08 34.2 4.5 0.0014 17.5 0.1 3.5 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|292657069|ref|YP_003536966.1| - 2.1e-08 33.7 5.5 5.5e-06 25.7 0.4 3.5 3 1 1 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.6 gi|292657069|ref|YP_003536966.1| - 4e-08 33.4 2.3 0.00034 20.8 0.3 2.8 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|292657069|ref|YP_003536966.1| - 1.4e-06 27.8 9.4 0.0023 17.3 0.2 3.2 2 1 1 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|292657069|ref|YP_003536966.1| - 2e-06 27.5 4.8 2.6e-06 27.1 0.4 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|292657069|ref|YP_003536966.1| - 1.9e-05 24.4 17.1 0.33 10.5 1.6 4.2 2 2 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|292657069|ref|YP_003536966.1| - 6e-05 23.4 0.3 0.011 16.1 0.0 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|292657069|ref|YP_003536966.1| - 9.7e-05 22.0 1.7 0.0022 17.6 0.1 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|292657069|ref|YP_003536966.1| - 0.0013 18.1 5.2 0.061 12.6 0.1 3.3 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|292657069|ref|YP_003536966.1| - 0.0047 16.1 0.0 2.2 7.3 0.0 2.2 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|292657069|ref|YP_003536966.1| - 0.0065 16.4 5.3 0.025 14.5 0.1 2.6 3 0 0 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|292657069|ref|YP_003536966.1| - 0.017 15.1 4.0 2 8.4 0.1 3.6 3 1 1 4 4 4 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|292657069|ref|YP_003536966.1| - 0.019 15.2 0.6 0.75 10.1 0.1 2.9 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.6 gi|292657069|ref|YP_003536966.1| - 0.078 13.5 0.6 2.1 8.9 0.0 2.9 3 1 0 3 3 2 0 XdhC Rossmann domain E3_binding PF02817.17 gi|292657069|ref|YP_003536966.1| - 0.11 12.8 2.1 9.4 6.7 0.0 3.9 4 0 0 4 4 4 0 e3 binding domain Lycopene_cycl PF05834.12 gi|292657069|ref|YP_003536966.1| - 0.15 11.1 0.6 13 4.7 0.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|292657069|ref|YP_003536966.1| - 1.2 8.3 5.5 0.6 9.3 0.3 2.8 3 1 0 3 3 3 0 Thi4 family Trp_halogenase PF04820.14 gi|292657069|ref|YP_003536966.1| - 1.5 7.6 6.4 1.8 7.3 0.1 2.9 2 1 0 3 3 3 0 Tryptophan halogenase HTH_3 PF01381.22 gi|292657070|ref|YP_003536967.1| - 4.2e-17 61.9 0.0 4.7e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|292657070|ref|YP_003536967.1| - 6e-12 45.7 0.2 7.5e-12 45.4 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|292657070|ref|YP_003536967.1| - 8.4e-09 35.3 0.0 1e-08 35.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|292657070|ref|YP_003536967.1| - 3.3e-06 27.4 0.0 3.8e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|292657070|ref|YP_003536967.1| - 2.8e-05 23.9 0.2 3.5e-05 23.6 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|292657070|ref|YP_003536967.1| - 0.00038 19.9 0.1 0.00058 19.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|292657070|ref|YP_003536967.1| - 0.0013 18.6 0.1 0.002 18.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|292657070|ref|YP_003536967.1| - 0.0036 16.8 0.3 0.0052 16.3 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|292657070|ref|YP_003536967.1| - 0.0046 16.8 0.1 0.0067 16.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|292657070|ref|YP_003536967.1| - 0.016 15.1 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 HTH domain YdaS_antitoxin PF15943.5 gi|292657070|ref|YP_003536967.1| - 0.016 15.0 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_AsnC-type PF13404.6 gi|292657070|ref|YP_003536967.1| - 0.025 14.4 0.3 0.041 13.7 0.3 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|292657070|ref|YP_003536967.1| - 0.043 13.6 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Crp PF00325.20 gi|292657070|ref|YP_003536967.1| - 0.05 13.3 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF1323 PF07037.11 gi|292657070|ref|YP_003536967.1| - 0.059 13.8 0.0 0.076 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_37 PF13744.6 gi|292657070|ref|YP_003536967.1| - 0.069 13.1 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|292657070|ref|YP_003536967.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HTH_28 PF13518.6 gi|292657070|ref|YP_003536967.1| - 0.14 12.4 0.1 0.29 11.3 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2178 PF09946.9 gi|292657071|ref|YP_003536968.1| - 1.7e-05 24.9 0.8 6.6e-05 23.0 0.6 1.9 1 1 1 2 2 2 1 Predicted membrane protein (DUF2178) DUF981 PF06168.11 gi|292657071|ref|YP_003536968.1| - 0.0053 16.7 1.7 0.0081 16.1 1.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF981) DUF4956 PF16316.5 gi|292657071|ref|YP_003536968.1| - 5.7 6.6 6.0 0.41 10.3 0.6 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4956) HAD PF12710.7 gi|292657073|ref|YP_003536970.1| - 4e-25 89.3 0.3 4.8e-25 89.1 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|292657073|ref|YP_003536970.1| - 3e-14 53.8 4.3 3.3e-12 47.1 4.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|292657073|ref|YP_003536970.1| - 1.8e-13 50.9 0.1 3.9e-09 36.6 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|292657073|ref|YP_003536970.1| - 5.4e-07 29.9 0.1 3.9e-05 23.8 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|292657073|ref|YP_003536970.1| - 0.001 18.5 0.0 0.063 12.7 0.0 2.1 2 0 0 2 2 2 1 Putative Phosphatase DUF4392 PF14336.6 gi|292657073|ref|YP_003536970.1| - 0.028 13.9 0.0 3.1 7.1 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) Glyco_trans_4_4 PF13579.6 gi|292657073|ref|YP_003536970.1| - 0.041 14.3 0.1 0.12 12.8 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain S6PP PF05116.13 gi|292657073|ref|YP_003536970.1| - 0.057 12.9 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|292657073|ref|YP_003536970.1| - 0.099 12.8 0.0 0.76 9.9 0.0 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|292657073|ref|YP_003536970.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DUF835 PF05763.12 gi|292657075|ref|YP_003536972.1| - 1.9e-05 24.4 0.0 2.3e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) 2-Hacid_dh_C PF02826.19 gi|292657076|ref|YP_003536973.1| - 2.9e-57 192.9 0.0 5.2e-57 192.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|292657076|ref|YP_003536973.1| - 4.4e-37 126.7 1.0 8.4e-37 125.8 0.7 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|292657076|ref|YP_003536973.1| - 0.00038 20.2 2.5 0.00043 20.0 0.0 2.4 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.15 gi|292657076|ref|YP_003536973.1| - 0.015 15.5 0.1 0.17 12.0 0.0 2.8 3 1 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|292657076|ref|YP_003536973.1| - 0.036 14.3 0.3 0.22 11.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|292657076|ref|YP_003536973.1| - 0.067 13.6 0.0 0.23 11.9 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.15 gi|292657076|ref|YP_003536973.1| - 0.1 13.0 0.1 0.86 10.1 0.0 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PALP PF00291.25 gi|292657077|ref|YP_003536974.1| - 1.6e-70 237.9 3.8 1.8e-70 237.7 3.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|292657077|ref|YP_003536974.1| - 0.024 15.0 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 C1 domain TrmB PF01978.19 gi|292657078|ref|YP_003536975.1| - 1.5e-14 53.6 0.0 2e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|292657078|ref|YP_003536975.1| - 3.4e-07 30.1 0.1 4.7e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|292657078|ref|YP_003536975.1| - 1.3e-05 25.0 0.1 1.9e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|292657078|ref|YP_003536975.1| - 1.7e-05 24.3 0.1 2.7e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|292657078|ref|YP_003536975.1| - 0.0011 18.8 0.1 0.002 17.9 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|292657078|ref|YP_003536975.1| - 0.0011 19.0 0.3 0.0018 18.3 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|292657078|ref|YP_003536975.1| - 0.0036 17.2 0.0 0.05 13.5 0.0 2.3 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) MerR-DNA-bind PF09278.11 gi|292657078|ref|YP_003536975.1| - 0.0037 17.8 0.0 2.7 8.6 0.0 2.3 2 0 0 2 2 2 2 MerR, DNA binding HTH_27 PF13463.6 gi|292657078|ref|YP_003536975.1| - 0.0039 17.7 0.1 0.0061 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|292657078|ref|YP_003536975.1| - 0.0052 16.7 0.1 0.0073 16.3 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|292657078|ref|YP_003536975.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|292657078|ref|YP_003536975.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|292657078|ref|YP_003536975.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain hemP PF10636.9 gi|292657079|ref|YP_003536976.1| - 0.069 13.0 0.5 0.19 11.6 0.1 1.9 2 1 0 2 2 2 0 Hemin uptake protein hemP YajC PF02699.15 gi|292657079|ref|YP_003536976.1| - 0.075 12.9 0.0 0.077 12.9 0.0 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit Tape_meas_lam_C PF09718.10 gi|292657080|ref|YP_003536977.1| - 0.05 13.7 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Cupin_2 PF07883.11 gi|292657082|ref|YP_003536979.1| - 2.6e-12 46.3 0.1 3.5e-12 45.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain DMSP_lyase PF16867.5 gi|292657082|ref|YP_003536979.1| - 0.011 15.4 0.1 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|292657082|ref|YP_003536979.1| - 0.011 15.4 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|292657082|ref|YP_003536979.1| - 0.046 13.3 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.18 gi|292657082|ref|YP_003536979.1| - 0.084 12.8 0.0 0.098 12.5 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.6 gi|292657082|ref|YP_003536979.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AraC-binding-like domain Ppnp PF06865.11 gi|292657082|ref|YP_003536979.1| - 0.12 12.8 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase AraC_binding PF02311.19 gi|292657082|ref|YP_003536979.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain CstA PF02554.14 gi|292657084|ref|YP_003536981.1| - 1.8e-112 376.0 19.0 1.8e-112 376.0 19.0 1.8 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|292657084|ref|YP_003536981.1| - 1.3e-30 106.1 3.2 1.3e-30 106.1 3.2 3.7 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA DUF973 PF06157.11 gi|292657084|ref|YP_003536981.1| - 0.16 11.0 5.1 1.7 7.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF973) Pox_P21 PF05313.12 gi|292657084|ref|YP_003536981.1| - 0.85 9.2 9.3 0.69 9.5 5.3 2.6 3 0 0 3 3 3 0 Poxvirus P21 membrane protein Vut_1 PF02592.15 gi|292657084|ref|YP_003536981.1| - 1.5 9.1 18.1 0.1 12.9 7.2 3.3 2 1 0 2 2 2 0 Putative vitamin uptake transporter ArsA_ATPase PF02374.15 gi|292657085|ref|YP_003536982.1| - 2.9e-73 246.7 0.0 3.7e-73 246.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|292657085|ref|YP_003536982.1| - 8.4e-13 48.6 0.0 1.2e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|292657085|ref|YP_003536982.1| - 2.8e-08 33.9 0.0 4.1e-08 33.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|292657085|ref|YP_003536982.1| - 0.00017 21.2 0.0 0.0038 16.7 0.5 2.3 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|292657085|ref|YP_003536982.1| - 0.0018 17.8 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATPase PF06745.13 gi|292657085|ref|YP_003536982.1| - 0.0094 15.3 0.1 0.019 14.3 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|292657085|ref|YP_003536982.1| - 0.012 15.2 1.2 0.052 13.1 1.2 2.1 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|292657085|ref|YP_003536982.1| - 0.027 13.9 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.22 gi|292657085|ref|YP_003536982.1| - 0.066 12.8 0.2 0.16 11.6 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|292657085|ref|YP_003536982.1| - 0.17 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_33 PF13671.6 gi|292657085|ref|YP_003536982.1| - 0.17 12.0 0.8 0.38 10.9 0.1 2.1 3 1 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 gi|292657085|ref|YP_003536982.1| - 0.18 11.6 0.1 0.44 10.3 0.1 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Cytochrom_B559a PF00284.20 gi|292657086|ref|YP_003536983.1| - 0.027 14.2 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.19 gi|292657087|ref|YP_003536984.1| - 1.9e-45 154.6 0.0 2.4e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|292657087|ref|YP_003536984.1| - 1.9e-21 75.8 0.0 3.6e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|292657087|ref|YP_003536984.1| - 0.00033 20.6 0.1 0.071 13.0 0.1 2.2 2 0 0 2 2 2 2 RsgA GTPase Zeta_toxin PF06414.12 gi|292657087|ref|YP_003536984.1| - 0.0012 18.2 0.9 0.019 14.2 0.1 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|292657087|ref|YP_003536984.1| - 0.012 16.0 0.0 0.05 14.0 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|292657087|ref|YP_003536984.1| - 0.019 13.9 0.0 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TsaE PF02367.17 gi|292657087|ref|YP_003536984.1| - 0.023 14.7 0.1 0.043 13.8 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE GTP_EFTU PF00009.27 gi|292657087|ref|YP_003536984.1| - 0.055 13.0 0.0 0.66 9.5 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|292657087|ref|YP_003536984.1| - 0.076 13.1 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain UPRTase PF14681.6 gi|292657089|ref|YP_003536986.1| - 1.5e-48 165.0 0.0 1.8e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|292657089|ref|YP_003536986.1| - 4.4e-09 36.1 0.2 6.3e-09 35.5 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPF0029 PF01205.19 gi|292657091|ref|YP_003536988.1| - 7.4e-29 100.2 0.0 9.7e-29 99.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|292657091|ref|YP_003536988.1| - 3.6e-10 39.6 0.7 7.5e-10 38.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|292657091|ref|YP_003536988.1| - 0.0016 18.4 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF348 PF03990.14 gi|292657091|ref|YP_003536988.1| - 0.059 13.1 1.1 6.8 6.5 0.0 3.0 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain ACT_7 PF13840.6 gi|292657092|ref|YP_003536989.1| - 1.7e-06 27.7 0.1 4.3e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|292657092|ref|YP_003536989.1| - 0.00037 20.2 1.6 0.00063 19.5 0.1 2.3 3 1 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|292657092|ref|YP_003536989.1| - 0.054 14.1 0.1 1.5 9.5 0.0 2.3 2 0 0 2 2 2 0 ACT domain Lar_restr_allev PF14354.6 gi|292657093|ref|YP_003536990.1| - 0.017 15.5 0.6 0.029 14.7 0.0 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar IGPD PF00475.18 gi|292657094|ref|YP_003536991.1| - 2.1e-61 206.5 2.3 2.8e-61 206.0 2.3 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ClpS PF02617.17 gi|292657094|ref|YP_003536991.1| - 0.059 13.2 0.1 6.9 6.5 0.0 2.5 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS His_biosynth PF00977.21 gi|292657096|ref|YP_003536993.1| - 1e-75 254.2 3.1 1.1e-75 254.0 3.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|292657096|ref|YP_003536993.1| - 5.9e-10 38.7 0.1 1.7e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|292657096|ref|YP_003536993.1| - 3.2e-09 36.6 9.4 1.4e-06 28.0 2.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|292657096|ref|YP_003536993.1| - 7.5e-09 35.3 6.0 5e-05 22.7 0.3 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|292657096|ref|YP_003536993.1| - 3.5e-08 33.0 0.3 3.6e-05 23.1 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|292657096|ref|YP_003536993.1| - 6.1e-07 28.9 0.9 0.0023 17.2 0.1 3.6 2 2 2 4 4 4 2 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|292657096|ref|YP_003536993.1| - 3.3e-05 23.5 2.9 0.0086 15.6 0.1 2.4 2 1 0 2 2 2 2 PcrB family TMP-TENI PF02581.17 gi|292657096|ref|YP_003536993.1| - 4.8e-05 22.8 0.6 0.0043 16.4 0.3 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase Trp_syntA PF00290.20 gi|292657096|ref|YP_003536993.1| - 0.00029 19.8 0.4 0.049 12.5 0.0 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 gi|292657096|ref|YP_003536993.1| - 0.00073 19.0 0.1 0.14 11.6 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|292657096|ref|YP_003536993.1| - 0.0052 15.8 2.3 0.63 9.0 0.4 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|292657096|ref|YP_003536993.1| - 0.015 14.5 0.4 3.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DNA_pol_lambd_f PF10391.9 gi|292657096|ref|YP_003536993.1| - 0.029 14.2 0.2 8.9 6.2 0.0 3.1 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda FMN_dh PF01070.18 gi|292657096|ref|YP_003536993.1| - 0.24 10.4 9.1 1.5 7.8 1.1 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|292657096|ref|YP_003536993.1| - 0.49 9.7 2.3 1.9 7.8 0.3 2.2 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PGM_PMM_I PF02878.16 gi|292657097|ref|YP_003536994.1| - 6e-35 119.9 0.0 9.9e-35 119.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|292657097|ref|YP_003536994.1| - 5.3e-29 100.9 0.2 1.2e-28 99.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|292657097|ref|YP_003536994.1| - 2.5e-17 62.8 0.2 9.1e-17 61.0 0.2 2.1 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|292657097|ref|YP_003536994.1| - 1.6e-13 50.8 0.1 6.6e-13 48.9 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ADH_zinc_N PF00107.26 gi|292657097|ref|YP_003536994.1| - 0.082 12.9 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF4440 PF14534.6 gi|292657097|ref|YP_003536994.1| - 0.084 13.3 0.7 0.76 10.2 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4440) CinA_KH PF18146.1 gi|292657097|ref|YP_003536994.1| - 0.23 11.6 1.6 1 9.6 0.2 2.5 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Smoothelin PF12510.8 gi|292657097|ref|YP_003536994.1| - 1.4 9.1 3.4 1.6 8.8 0.6 2.4 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein DUF3800 PF12686.7 gi|292657098|ref|YP_003536995.1| - 2.1e-07 31.6 0.0 3.7e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) PRA-CH PF01502.18 gi|292657100|ref|YP_003536997.1| - 1.8e-34 117.4 0.2 2.9e-34 116.7 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.11 gi|292657101|ref|YP_003536998.1| - 5.1e-11 42.9 0.0 6.7e-09 36.2 0.1 2.3 2 0 0 2 2 2 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|292657101|ref|YP_003536998.1| - 2.9e-09 37.3 5.6 2.9e-09 37.3 5.6 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family ABC2_membrane PF01061.24 gi|292657102|ref|YP_003536999.1| - 0.85 9.0 8.0 1.7 8.0 7.8 1.6 1 1 0 1 1 1 0 ABC-2 type transporter DUF4131 PF13567.6 gi|292657102|ref|YP_003536999.1| - 9.1 5.9 13.4 12 5.5 3.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Fer2 PF00111.27 gi|292657103|ref|YP_003537000.1| - 1.8e-14 53.5 0.4 2.8e-14 52.8 0.4 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|292657103|ref|YP_003537000.1| - 0.022 14.8 0.3 0.045 13.8 0.3 1.7 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|292657104|ref|YP_003537001.1| - 4.4e-43 147.6 23.1 5.1e-42 144.1 23.0 2.2 1 1 0 1 1 1 1 Phosphate transporter family Cys_Met_Meta_PP PF01053.20 gi|292657105|ref|YP_003537002.1| - 1.1e-134 448.8 0.0 1.2e-134 448.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|292657105|ref|YP_003537002.1| - 5.5e-10 39.0 0.0 9.1e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|292657105|ref|YP_003537002.1| - 2.9e-05 23.5 0.7 0.00012 21.5 0.7 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|292657105|ref|YP_003537002.1| - 0.00085 18.4 0.1 0.0015 17.5 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|292657105|ref|YP_003537002.1| - 0.0063 15.8 0.1 0.014 14.7 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase DUF3568 PF12092.8 gi|292657105|ref|YP_003537002.1| - 0.17 12.0 0.1 4.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3568) SepSecS PF05889.13 gi|292657105|ref|YP_003537002.1| - 0.2 10.3 0.0 0.28 9.8 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Abhydrolase_1 PF00561.20 gi|292657106|ref|YP_003537003.1| - 3.4e-29 102.3 0.2 4.5e-29 101.9 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 gi|292657106|ref|YP_003537003.1| - 0.0089 15.7 0.0 0.038 13.6 0.0 1.9 2 0 0 2 2 2 1 Putative esterase Hydrolase_4 PF12146.8 gi|292657106|ref|YP_003537003.1| - 0.052 12.8 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Cys_Met_Meta_PP PF01053.20 gi|292657107|ref|YP_003537004.1| - 1e-128 429.2 0.0 1.1e-128 429.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|292657107|ref|YP_003537004.1| - 1.2e-08 34.6 0.0 1.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|292657107|ref|YP_003537004.1| - 3.7e-05 23.2 1.4 6e-05 22.5 1.4 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|292657107|ref|YP_003537004.1| - 0.00052 19.1 0.1 0.00079 18.5 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V SepSecS PF05889.13 gi|292657107|ref|YP_003537004.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DNA_ligase_aden PF01653.18 gi|292657108|ref|YP_003537005.1| - 6.3e-107 357.3 0.0 8.9e-107 356.9 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|292657108|ref|YP_003537005.1| - 8.8e-29 99.2 5.8 2.2e-28 97.9 5.8 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|292657108|ref|YP_003537005.1| - 4.1e-18 65.2 0.4 3.8e-15 55.7 0.1 3.4 2 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|292657108|ref|YP_003537005.1| - 1.7e-15 57.4 0.1 6e-07 30.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|292657108|ref|YP_003537005.1| - 3.1e-10 40.3 0.0 5e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|292657108|ref|YP_003537005.1| - 7.1e-07 28.8 0.0 0.23 11.4 0.0 3.7 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 gi|292657108|ref|YP_003537005.1| - 0.00011 22.1 3.3 0.00011 22.1 3.3 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain PTCB-BRCT PF12738.7 gi|292657108|ref|YP_003537005.1| - 0.057 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 twin BRCT domain BRCT_2 PF16589.5 gi|292657108|ref|YP_003537005.1| - 0.066 13.6 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain ABC2_membrane_2 PF12679.7 gi|292657109|ref|YP_003537006.1| - 4e-50 170.7 18.1 5.9e-50 170.2 18.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|292657109|ref|YP_003537006.1| - 4.6e-09 36.5 9.5 4.6e-09 36.5 9.5 2.6 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|292657109|ref|YP_003537006.1| - 9.2e-08 31.9 5.5 9.2e-08 31.9 5.5 2.2 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|292657109|ref|YP_003537006.1| - 4.9e-06 25.9 17.1 4.9e-06 25.9 17.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|292657109|ref|YP_003537006.1| - 1.9 6.7 16.4 2.5 6.3 16.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|292657110|ref|YP_003537007.1| - 2.4e-29 102.6 0.0 3.6e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|292657110|ref|YP_003537007.1| - 8.7e-12 45.4 0.1 2.5e-08 34.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|292657110|ref|YP_003537007.1| - 8e-08 32.9 0.0 3e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|292657110|ref|YP_003537007.1| - 0.00032 20.5 0.1 0.0011 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|292657110|ref|YP_003537007.1| - 0.0069 16.3 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|292657110|ref|YP_003537007.1| - 0.019 15.4 0.1 0.032 14.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|292657110|ref|YP_003537007.1| - 0.023 15.1 0.0 0.049 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|292657110|ref|YP_003537007.1| - 0.031 14.0 0.1 0.09 12.5 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|292657110|ref|YP_003537007.1| - 0.034 13.6 0.0 5.2 6.5 0.0 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain MeaB PF03308.16 gi|292657110|ref|YP_003537007.1| - 0.037 13.0 0.0 0.063 12.2 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_27 PF13514.6 gi|292657110|ref|YP_003537007.1| - 0.17 11.4 0.0 0.62 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain VIT1 PF01988.19 gi|292657112|ref|YP_003537009.1| - 7.6e-07 29.2 5.2 4.9e-05 23.3 3.7 2.0 1 1 1 2 2 2 2 VIT family MCPsignal PF00015.21 gi|292657113|ref|YP_003537010.1| - 4.8e-41 140.4 51.1 1e-39 136.1 23.0 4.1 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|292657113|ref|YP_003537010.1| - 6e-06 26.4 40.5 2.3e-05 24.6 2.3 5.4 2 2 3 5 5 5 3 Bacterial protein of unknown function (DUF948) PAS_9 PF13426.7 gi|292657113|ref|YP_003537010.1| - 1.5e-05 25.2 0.0 5.6e-05 23.4 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|292657113|ref|YP_003537010.1| - 3.5e-05 24.0 0.6 3.5e-05 24.0 0.6 3.7 3 2 0 3 3 3 1 PAS fold PAS PF00989.25 gi|292657113|ref|YP_003537010.1| - 5.7e-05 23.1 0.0 0.00033 20.6 0.0 2.5 1 1 0 1 1 1 1 PAS fold CENP-F_leu_zip PF10473.9 gi|292657113|ref|YP_003537010.1| - 0.00048 20.2 8.4 0.00048 20.2 8.4 2.7 3 1 0 3 3 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RNA12 PF10443.9 gi|292657113|ref|YP_003537010.1| - 0.0011 17.7 3.6 0.0011 17.7 3.6 1.8 2 0 0 2 2 2 1 RNA12 protein DUF3450 PF11932.8 gi|292657113|ref|YP_003537010.1| - 0.0013 18.1 6.9 0.0013 18.1 6.9 2.9 1 1 0 2 2 2 1 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|292657113|ref|YP_003537010.1| - 0.0013 18.8 7.9 0.0013 18.8 7.9 3.9 3 1 1 4 4 4 1 TPR/MLP1/MLP2-like protein DUF1664 PF07889.12 gi|292657113|ref|YP_003537010.1| - 0.0028 17.7 22.5 0.14 12.2 2.0 4.5 2 2 3 5 5 5 1 Protein of unknown function (DUF1664) YkyA PF10368.9 gi|292657113|ref|YP_003537010.1| - 0.0036 17.0 22.6 0.052 13.2 8.7 3.2 1 1 0 2 2 2 2 Putative cell-wall binding lipoprotein PilJ PF13675.6 gi|292657113|ref|YP_003537010.1| - 0.017 15.1 1.1 0.017 15.1 1.1 4.3 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term HSBP1 PF06825.12 gi|292657113|ref|YP_003537010.1| - 0.035 13.9 0.1 0.035 13.9 0.1 2.8 3 0 0 3 3 1 0 Heat shock factor binding protein 1 FlgN PF05130.12 gi|292657113|ref|YP_003537010.1| - 0.047 14.2 22.3 2.2 8.8 1.0 4.2 1 1 2 4 4 4 0 FlgN protein Spc7 PF08317.11 gi|292657113|ref|YP_003537010.1| - 0.06 12.2 24.9 0.42 9.4 9.4 2.5 1 1 0 2 2 2 0 Spc7 kinetochore protein IFT57 PF10498.9 gi|292657113|ref|YP_003537010.1| - 0.062 12.3 16.1 0.022 13.7 5.6 2.4 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 SCO1-SenC PF02630.14 gi|292657113|ref|YP_003537010.1| - 0.081 12.8 9.5 1.6 8.6 2.4 2.9 2 2 0 2 2 2 0 SCO1/SenC Laminin_II PF06009.12 gi|292657113|ref|YP_003537010.1| - 0.1 12.6 33.8 0.073 13.1 3.4 4.7 2 2 2 4 4 4 0 Laminin Domain II Spectrin PF00435.21 gi|292657113|ref|YP_003537010.1| - 0.36 11.3 18.0 1.4 9.4 1.7 3.8 1 1 2 4 4 3 0 Spectrin repeat Syntaxin-6_N PF09177.11 gi|292657113|ref|YP_003537010.1| - 0.38 11.3 25.7 0.27 11.8 0.9 4.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Cnd1_N PF12922.7 gi|292657113|ref|YP_003537010.1| - 0.51 10.2 5.2 0.15 11.9 0.9 2.1 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1, N-term AIP3 PF03915.13 gi|292657113|ref|YP_003537010.1| - 0.57 9.2 21.0 0.53 9.3 7.2 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 Atg14 PF10186.9 gi|292657113|ref|YP_003537010.1| - 0.86 8.6 9.3 3.4 6.7 2.5 2.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2203 PF09969.9 gi|292657113|ref|YP_003537010.1| - 0.88 10.3 26.7 0.38 11.5 2.0 4.6 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|292657113|ref|YP_003537010.1| - 1.1 8.5 10.7 2.6 7.2 3.0 2.5 2 1 0 2 2 2 0 TMPIT-like protein DUF489 PF04356.12 gi|292657113|ref|YP_003537010.1| - 1.4 8.9 7.2 1.3 8.9 1.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Sec34 PF04136.15 gi|292657113|ref|YP_003537010.1| - 1.5 8.7 16.4 3.6 7.4 1.4 4.8 2 2 4 6 6 6 0 Sec34-like family PIN_8 PF18476.1 gi|292657113|ref|YP_003537010.1| - 2.6 7.8 14.7 4.5 7.1 4.2 2.5 2 1 0 2 2 2 0 PIN like domain Seryl_tRNA_N PF02403.22 gi|292657113|ref|YP_003537010.1| - 3.2 8.0 19.2 2 8.7 3.6 4.2 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Syntaxin_2 PF14523.6 gi|292657113|ref|YP_003537010.1| - 3.9 7.9 9.0 34 4.9 0.1 3.8 2 1 1 3 3 3 0 Syntaxin-like protein LXG PF04740.12 gi|292657113|ref|YP_003537010.1| - 3.9 7.1 21.8 0.99 9.1 9.1 3.1 2 2 0 2 2 2 0 LXG domain of WXG superfamily ATG16 PF08614.11 gi|292657113|ref|YP_003537010.1| - 4.7 7.4 33.0 0.037 14.2 10.0 3.0 1 1 2 3 3 2 0 Autophagy protein 16 (ATG16) Syntaxin-5_N PF11416.8 gi|292657113|ref|YP_003537010.1| - 5.6 6.3 5.5 12 5.2 0.2 2.5 2 0 0 2 2 2 0 Syntaxin-5 N-terminal, Sly1p-binding domain TMF_TATA_bd PF12325.8 gi|292657113|ref|YP_003537010.1| - 7.7 6.8 24.2 0.067 13.4 6.4 4.2 3 2 1 4 4 4 0 TATA element modulatory factor 1 TATA binding PhageMin_Tail PF10145.9 gi|292657113|ref|YP_003537010.1| - 9.4 6.0 31.4 1.9 8.3 15.4 2.7 1 1 0 2 2 2 0 Phage-related minor tail protein UPF0242 PF06785.11 gi|292657113|ref|YP_003537010.1| - 9.8 6.2 13.8 5.2 7.1 4.7 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus UvrC_HhH_N PF08459.11 gi|292657114|ref|YP_003537011.1| - 7e-41 139.7 0.0 1.2e-40 138.9 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|292657114|ref|YP_003537011.1| - 7.2e-13 48.9 0.1 3.1e-12 46.9 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|292657114|ref|YP_003537011.1| - 9e-13 47.4 0.3 2.8e-08 33.2 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|292657114|ref|YP_003537011.1| - 6.8e-10 38.9 0.0 1.5e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|292657114|ref|YP_003537011.1| - 3.3e-07 29.8 2.9 8.5e-07 28.5 2.9 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|292657114|ref|YP_003537011.1| - 1e-06 28.9 0.0 1.8e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|292657114|ref|YP_003537011.1| - 1.7e-05 25.3 0.0 0.023 15.3 0.0 3.3 2 1 1 3 3 3 2 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|292657114|ref|YP_003537011.1| - 0.00011 22.3 0.0 0.084 13.2 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif HHH_8 PF14716.6 gi|292657114|ref|YP_003537011.1| - 0.0065 16.8 0.0 1.7 9.1 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|292657114|ref|YP_003537011.1| - 0.044 14.1 0.0 0.16 12.3 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif GHMP_kinases_C PF08544.13 gi|292657114|ref|YP_003537011.1| - 0.13 12.6 0.0 13 6.2 0.0 2.9 2 0 0 2 2 2 0 GHMP kinases C terminal FliT PF05400.13 gi|292657114|ref|YP_003537011.1| - 0.42 11.5 4.6 24 5.8 0.0 3.6 3 0 0 3 3 3 0 Flagellar protein FliT Ldh_1_N PF00056.23 gi|292657115|ref|YP_003537012.1| - 5.5e-39 133.5 0.2 7.9e-39 133.0 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|292657115|ref|YP_003537012.1| - 5.5e-28 98.0 0.0 8.8e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Auto_anti-p27 PF06677.12 gi|292657116|ref|YP_003537013.1| - 4.8e-16 58.6 0.9 6.9e-16 58.1 0.9 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|292657116|ref|YP_003537013.1| - 0.00093 19.2 1.5 0.0017 18.3 1.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|292657116|ref|YP_003537013.1| - 0.018 15.0 0.6 0.029 14.3 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|292657116|ref|YP_003537013.1| - 0.039 13.9 1.0 0.063 13.2 1.0 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-CHY PF05495.12 gi|292657116|ref|YP_003537013.1| - 0.092 13.3 0.5 0.16 12.5 0.5 1.4 1 0 0 1 1 1 0 CHY zinc finger HscB_4_cys PF18256.1 gi|292657116|ref|YP_003537013.1| - 0.096 12.5 2.5 0.28 11.0 2.5 1.8 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif GFA PF04828.14 gi|292657116|ref|YP_003537013.1| - 0.15 12.5 1.3 2.2 8.7 0.1 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.6 gi|292657116|ref|YP_003537013.1| - 0.25 10.8 4.4 0.95 9.0 4.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain BSP_II PF05432.11 gi|292657116|ref|YP_003537013.1| - 1.2 8.7 16.0 1.5 8.5 16.0 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) zinc_ribbon_2 PF13240.6 gi|292657116|ref|YP_003537013.1| - 1.4 8.7 4.4 5.3 6.9 4.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Usp PF00582.26 gi|292657117|ref|YP_003537014.1| - 5e-17 62.7 0.3 1.2e-16 61.4 0.3 1.6 1 1 0 1 1 1 1 Universal stress protein family PDZ PF00595.24 gi|292657117|ref|YP_003537014.1| - 0.092 13.1 0.1 1.6 9.1 0.0 2.6 3 0 0 3 3 3 0 PDZ domain Helicase_C PF00271.31 gi|292657118|ref|YP_003537015.1| - 7.5e-24 84.2 0.1 2.6e-23 82.5 0.0 2.0 2 0 0 2 2 1 1 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|292657118|ref|YP_003537015.1| - 1.1e-23 84.2 0.0 2.5e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|292657118|ref|YP_003537015.1| - 4e-17 62.5 0.0 1.7e-16 60.5 0.0 2.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|292657118|ref|YP_003537015.1| - 6.6e-13 49.0 0.0 1.4e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|292657118|ref|YP_003537015.1| - 1.9e-11 44.4 1.4 3e-10 40.5 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|292657118|ref|YP_003537015.1| - 4e-11 42.8 0.6 2.6e-10 40.2 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|292657118|ref|YP_003537015.1| - 1.2e-07 31.2 0.3 4e-05 23.3 0.1 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|292657118|ref|YP_003537015.1| - 0.022 15.3 0.0 0.11 13.1 0.0 2.3 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MtrB PF05440.12 gi|292657118|ref|YP_003537015.1| - 0.024 15.1 0.0 0.063 13.7 0.0 1.7 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Helicase_C_2 PF13307.6 gi|292657118|ref|YP_003537015.1| - 0.062 13.5 1.7 0.11 12.6 0.1 2.3 2 0 0 2 2 2 0 Helicase C-terminal domain IMS_HHH PF11798.8 gi|292657118|ref|YP_003537015.1| - 0.085 13.2 0.0 1.9 9.0 0.0 3.0 2 0 0 2 2 2 0 IMS family HHH motif DUF4618 PF15397.6 gi|292657118|ref|YP_003537015.1| - 0.11 11.9 3.5 0.25 10.8 2.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) MEDS PF14417.6 gi|292657118|ref|YP_003537015.1| - 0.13 12.1 1.2 20 5.0 0.0 3.2 3 0 0 3 3 3 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HHH_8 PF14716.6 gi|292657118|ref|YP_003537015.1| - 0.41 11.0 2.2 1.5 9.3 0.0 3.0 3 1 0 3 3 3 0 Helix-hairpin-helix domain Fez1 PF06818.15 gi|292657118|ref|YP_003537015.1| - 1.9 8.9 6.5 2.5 8.5 4.8 1.9 2 0 0 2 2 2 0 Fez1 DUF2072 PF09845.9 gi|292657120|ref|YP_003537017.1| - 1.7e-33 115.7 1.0 1.3e-15 57.8 0.1 2.4 2 1 0 2 2 2 2 Zn-ribbon containing protein zf-C2H2_6 PF13912.6 gi|292657120|ref|YP_003537017.1| - 0.11 12.6 0.2 0.19 11.8 0.2 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|292657120|ref|YP_003537017.1| - 0.28 11.3 2.8 0.62 10.2 2.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|292657120|ref|YP_003537017.1| - 1.7 8.6 4.2 1.2 9.1 1.3 2.1 3 0 0 3 3 3 0 Zinc-ribbon containing domain zf-C2H2 PF00096.26 gi|292657120|ref|YP_003537017.1| - 6.1 7.5 4.7 1.5 9.4 0.6 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1610 PF07754.11 gi|292657120|ref|YP_003537017.1| - 6.2 6.9 8.0 62 3.7 8.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) DUF2073 PF09846.9 gi|292657121|ref|YP_003537018.1| - 1.5e-46 156.6 0.4 1.9e-46 156.3 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|292657122|ref|YP_003537019.1| - 4.2e-15 55.8 0.0 5.9e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|292657122|ref|YP_003537019.1| - 8.8e-11 41.7 0.4 0.00014 21.5 0.1 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|292657122|ref|YP_003537019.1| - 3.4e-08 33.1 0.0 7.8e-05 22.2 0.1 2.6 1 1 2 3 3 3 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|292657122|ref|YP_003537019.1| - 7.4e-06 26.0 0.0 0.045 13.7 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|292657122|ref|YP_003537019.1| - 2.7e-05 23.7 1.2 0.00031 20.3 1.2 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|292657122|ref|YP_003537019.1| - 9.3e-05 22.1 0.1 0.019 14.6 0.0 2.4 2 1 0 2 2 2 1 Ras family SRPRB PF09439.10 gi|292657122|ref|YP_003537019.1| - 0.00013 21.5 0.0 0.057 12.8 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|292657122|ref|YP_003537019.1| - 0.00014 21.2 0.0 0.00033 20.1 0.0 1.5 1 1 1 2 2 2 1 Septin NB-ARC PF00931.22 gi|292657122|ref|YP_003537019.1| - 0.00045 19.5 0.0 0.00081 18.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Roc PF08477.13 gi|292657122|ref|YP_003537019.1| - 0.00051 20.3 0.0 0.0099 16.1 0.0 2.2 1 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|292657122|ref|YP_003537019.1| - 0.0011 19.6 0.0 0.0039 17.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|292657122|ref|YP_003537019.1| - 0.0014 18.6 0.1 0.0023 17.9 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_28 PF13521.6 gi|292657122|ref|YP_003537019.1| - 0.0025 18.1 0.1 0.1 12.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|292657122|ref|YP_003537019.1| - 0.0033 17.4 0.1 0.015 15.2 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|292657122|ref|YP_003537019.1| - 0.0033 17.2 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|292657122|ref|YP_003537019.1| - 0.0034 17.8 0.0 0.023 15.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.23 gi|292657122|ref|YP_003537019.1| - 0.0057 16.7 0.0 0.73 9.9 0.1 2.5 1 1 1 2 2 2 1 Dynamin family RNA_helicase PF00910.22 gi|292657122|ref|YP_003537019.1| - 0.011 16.1 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase cobW PF02492.19 gi|292657122|ref|YP_003537019.1| - 0.011 15.3 0.3 3.5 7.2 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|292657122|ref|YP_003537019.1| - 0.013 15.9 0.0 0.024 15.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|292657122|ref|YP_003537019.1| - 0.023 15.2 0.0 0.043 14.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|292657122|ref|YP_003537019.1| - 0.03 13.3 0.1 1.3 7.9 0.0 2.8 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Gtr1_RagA PF04670.12 gi|292657122|ref|YP_003537019.1| - 0.04 13.3 0.0 1 8.7 0.0 2.2 2 1 0 2 2 2 0 Gtr1/RagA G protein conserved region RuvB_N PF05496.12 gi|292657122|ref|YP_003537019.1| - 0.046 13.5 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|292657122|ref|YP_003537019.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.17 gi|292657122|ref|YP_003537019.1| - 0.077 12.8 0.0 3 7.6 0.1 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|292657122|ref|YP_003537019.1| - 0.098 12.2 0.0 0.22 11.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|292657122|ref|YP_003537019.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF1184 PF06683.11 gi|292657122|ref|YP_003537019.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/NC_013967.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/NC_013967.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/NC_013967.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/NC_013967.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:43:40 2019 # [ok]