#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_20	PF12840.2	gi|292494317|ref|YP_003533459.1|	-	2.2e-05	24.1	0.3	0.0012	18.6	0.1	3.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|292494317|ref|YP_003533459.1|	-	0.00013	21.2	0.1	0.0011	18.3	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|292494317|ref|YP_003533459.1|	-	0.00036	20.1	0.0	0.0025	17.4	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|292494317|ref|YP_003533459.1|	-	0.0014	18.2	0.1	0.0033	17.0	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|292494317|ref|YP_003533459.1|	-	0.002	17.7	1.0	0.029	14.0	0.1	3.2	4	0	0	4	4	3	1	MarR	family
HTH_IclR	PF09339.5	gi|292494317|ref|YP_003533459.1|	-	0.0073	15.8	3.3	0.033	13.7	0.1	3.4	3	1	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|292494317|ref|YP_003533459.1|	-	0.0079	15.8	0.0	0.017	14.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|292494317|ref|YP_003533459.1|	-	0.016	15.0	0.2	0.055	13.3	0.0	2.0	2	0	0	2	2	1	0	Winged	helix-turn-helix
GntR	PF00392.16	gi|292494317|ref|YP_003533459.1|	-	0.027	13.9	0.1	0.086	12.2	0.1	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.17	gi|292494317|ref|YP_003533459.1|	-	0.037	13.7	1.5	1.5	8.5	0.1	3.0	3	0	0	3	3	2	0	MarR	family
Rrf2	PF02082.15	gi|292494317|ref|YP_003533459.1|	-	0.053	13.6	0.0	0.15	12.2	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.5	gi|292494317|ref|YP_003533459.1|	-	0.06	13.0	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_DeoR	PF08220.7	gi|292494317|ref|YP_003533459.1|	-	0.09	12.3	0.0	0.19	11.2	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|292494317|ref|YP_003533459.1|	-	0.12	12.2	0.1	1.3	8.9	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_9	PF08221.6	gi|292494317|ref|YP_003533459.1|	-	0.17	11.7	0.5	0.62	9.9	0.2	2.1	1	1	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Docking	PF08990.6	gi|292494318|ref|YP_003533460.1|	-	0.0086	15.2	0.9	0.022	13.9	0.1	2.1	2	0	0	2	2	2	1	Erythronolide	synthase	docking
TrmB	PF01978.14	gi|292494319|ref|YP_003533461.1|	-	0.00089	18.9	0.2	0.011	15.4	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|292494319|ref|YP_003533461.1|	-	0.0031	17.1	0.6	0.018	14.6	0.0	2.3	1	1	1	2	2	2	1	HTH	domain
HTH_20	PF12840.2	gi|292494319|ref|YP_003533461.1|	-	0.0035	17.1	0.1	0.076	12.8	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|292494319|ref|YP_003533461.1|	-	0.007	15.8	1.0	0.012	15.1	0.1	1.8	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
zf-dskA_traR	PF01258.12	gi|292494320|ref|YP_003533462.1|	-	0.051	13.3	0.2	0.12	12.1	0.1	1.6	1	0	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger