# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|389848880|ref|YP_006351116.1| - 6.8e-19 67.3 0.3 2.1e-18 65.8 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|389848880|ref|YP_006351116.1| - 4.2e-12 46.3 0.7 2.5e-11 43.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389848880|ref|YP_006351116.1| - 1.2e-11 44.8 0.7 1.3e-10 41.5 0.0 2.6 2 2 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|389848880|ref|YP_006351116.1| - 3.6e-06 26.8 0.0 1e-05 25.3 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|389848880|ref|YP_006351116.1| - 6.6e-06 25.8 0.0 3e-05 23.7 0.0 1.9 1 1 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|389848880|ref|YP_006351116.1| - 8.6e-06 25.9 0.0 2.5e-05 24.4 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|389848880|ref|YP_006351116.1| - 0.00071 18.6 1.1 0.11 11.4 0.0 3.1 2 1 1 3 3 3 1 KAP family P-loop domain AAA_32 PF13654.1 gi|389848880|ref|YP_006351116.1| - 0.0013 17.4 0.1 1.1 7.7 0.0 2.5 3 0 0 3 3 3 2 AAA domain DUF815 PF05673.8 gi|389848880|ref|YP_006351116.1| - 0.0015 17.5 0.0 0.0025 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) T2SE PF00437.15 gi|389848880|ref|YP_006351116.1| - 0.0036 16.2 0.0 0.0091 14.9 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|389848880|ref|YP_006351116.1| - 0.004 17.9 0.0 0.013 16.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|389848880|ref|YP_006351116.1| - 0.0041 16.9 0.5 1.3 8.7 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF87 DEAD PF00270.24 gi|389848880|ref|YP_006351116.1| - 0.0041 16.6 0.7 2.6 7.4 0.0 2.6 2 1 0 3 3 3 2 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|389848880|ref|YP_006351116.1| - 0.0096 16.2 0.0 0.034 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|389848880|ref|YP_006351116.1| - 0.013 14.3 0.0 0.023 13.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.7 gi|389848880|ref|YP_006351116.1| - 0.013 14.5 0.0 0.35 9.8 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|389848880|ref|YP_006351116.1| - 0.019 14.5 0.5 0.076 12.5 0.4 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|389848880|ref|YP_006351116.1| - 0.019 15.1 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|389848880|ref|YP_006351116.1| - 0.022 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|389848880|ref|YP_006351116.1| - 0.051 13.4 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.9 gi|389848880|ref|YP_006351116.1| - 0.057 12.3 0.0 0.093 11.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase MMR_HSR1 PF01926.18 gi|389848880|ref|YP_006351116.1| - 0.065 13.1 0.4 0.41 10.6 0.1 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|389848880|ref|YP_006351116.1| - 0.074 12.7 0.2 17 5.1 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|389848880|ref|YP_006351116.1| - 0.078 12.3 2.5 0.59 9.5 1.5 2.3 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|389848880|ref|YP_006351116.1| - 0.11 11.6 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Nitroreductase PF00881.19 gi|389848881|ref|YP_006351117.1| - 2.1e-15 56.9 0.0 1.9e-12 47.3 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family DUF35 PF01796.12 gi|389848882|ref|YP_006351118.1| - 0.14 12.3 0.9 0.19 11.9 0.6 1.2 1 0 0 1 1 1 0 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|389848883|ref|YP_006351119.1| - 3.4e-08 32.9 0.4 1.3e-07 31.0 0.3 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|389848883|ref|YP_006351119.1| - 0.00012 21.2 0.1 0.00034 19.7 0.1 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain Acetyltransf_1 PF00583.19 gi|389848884|ref|YP_006351120.1| - 2.6e-19 69.0 0.3 4.2e-19 68.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848884|ref|YP_006351120.1| - 9.3e-18 64.4 0.1 1.2e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389848884|ref|YP_006351120.1| - 5.6e-17 62.1 0.0 7e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848884|ref|YP_006351120.1| - 9.9e-12 44.8 0.2 1.9e-11 43.9 0.1 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848884|ref|YP_006351120.1| - 6.9e-11 42.0 0.3 1.2e-10 41.3 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848884|ref|YP_006351120.1| - 5.7e-10 38.8 0.0 8.9e-10 38.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|389848884|ref|YP_006351120.1| - 3.2e-08 33.8 0.1 4.3e-08 33.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|389848884|ref|YP_006351120.1| - 7.4e-06 25.9 0.0 9.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389848884|ref|YP_006351120.1| - 0.0006 19.7 1.1 0.0016 18.3 0.8 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|389848884|ref|YP_006351120.1| - 0.0088 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.1 gi|389848884|ref|YP_006351120.1| - 0.042 13.7 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Na_Pi_cotrans PF02690.10 gi|389848885|ref|YP_006351121.1| - 6.2e-22 77.8 17.5 6.7e-13 48.5 2.4 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter RhodobacterPufX PF11511.3 gi|389848885|ref|YP_006351121.1| - 1.2 8.5 3.9 25 4.3 0.3 3.2 2 0 0 2 2 2 0 Intrinsic membrane protein PufX Kinocilin PF15033.1 gi|389848885|ref|YP_006351121.1| - 7.8 6.0 6.7 48 3.4 2.9 2.9 2 1 0 2 2 2 0 Kinocilin protein Usp PF00582.21 gi|389848886|ref|YP_006351122.1| - 6.8e-33 113.8 3.0 7.6e-33 113.6 2.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF3201 PF11447.3 gi|389848886|ref|YP_006351122.1| - 0.036 13.4 0.0 0.046 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) DUF4010 PF13194.1 gi|389848887|ref|YP_006351123.1| - 3.3e-68 229.1 20.3 3.3e-68 229.1 14.1 3.1 2 1 0 3 3 3 1 Domain of unknown function (DUF4010) DUF3493 PF11998.3 gi|389848887|ref|YP_006351123.1| - 0.06 13.2 2.8 4.5 7.2 0.3 3.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) Na_Ca_ex PF01699.19 gi|389848888|ref|YP_006351124.1| - 6.9e-25 87.2 29.2 1.1e-16 60.6 5.1 2.6 2 1 0 2 2 2 2 Sodium/calcium exchanger protein DUF2619 PF10942.3 gi|389848888|ref|YP_006351124.1| - 0.08 12.8 4.3 4.9 7.1 0.0 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2619) DUF2665 PF11654.3 gi|389848888|ref|YP_006351124.1| - 0.12 11.9 0.1 0.45 10.1 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) Usp PF00582.21 gi|389848889|ref|YP_006351125.1| - 3.4e-36 124.4 0.4 4e-36 124.3 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Peptidase_C41 PF05417.6 gi|389848889|ref|YP_006351125.1| - 0.03 13.8 0.1 0.04 13.4 0.1 1.1 1 0 0 1 1 1 0 Hepatitis E cysteine protease Dodecin PF07311.7 gi|389848889|ref|YP_006351125.1| - 0.044 13.8 0.2 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Dodecin Rpp20 PF12328.3 gi|389848889|ref|YP_006351125.1| - 0.056 13.0 0.3 0.067 12.8 0.2 1.2 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Tape_meas_lam_C PF09718.5 gi|389848890|ref|YP_006351126.1| - 4.5e-05 23.2 0.0 4.9e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Con-6 PF10346.4 gi|389848890|ref|YP_006351126.1| - 0.0031 16.8 0.2 0.004 16.5 0.1 1.4 1 0 0 1 1 1 1 Conidiation protein 6 HR1 PF02185.11 gi|389848890|ref|YP_006351126.1| - 0.0046 16.6 0.1 0.0059 16.3 0.1 1.1 1 0 0 1 1 1 1 Hr1 repeat TPR_MLP1_2 PF07926.7 gi|389848890|ref|YP_006351126.1| - 0.0072 16.0 0.3 0.0078 15.9 0.2 1.1 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein ApoLp-III PF07464.6 gi|389848890|ref|YP_006351126.1| - 0.0078 16.2 0.2 0.0085 16.1 0.1 1.1 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Scaffolding_pro PF11418.3 gi|389848890|ref|YP_006351126.1| - 0.011 16.0 0.3 0.011 15.9 0.2 1.1 1 0 0 1 1 1 0 Phi29 scaffolding protein Apolipoprotein PF01442.13 gi|389848890|ref|YP_006351126.1| - 0.015 14.7 0.3 0.018 14.5 0.2 1.0 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Tektin PF03148.9 gi|389848890|ref|YP_006351126.1| - 0.021 13.3 0.2 0.022 13.3 0.2 1.0 1 0 0 1 1 1 0 Tektin family DUF4164 PF13747.1 gi|389848890|ref|YP_006351126.1| - 0.028 14.5 0.9 0.14 12.2 0.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) Filament PF00038.16 gi|389848890|ref|YP_006351126.1| - 0.04 13.3 0.7 0.04 13.4 0.5 1.0 1 0 0 1 1 1 0 Intermediate filament protein DUF3543 PF12063.3 gi|389848890|ref|YP_006351126.1| - 0.047 12.9 0.2 0.073 12.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3543) YtxH PF12732.2 gi|389848890|ref|YP_006351126.1| - 0.049 13.9 0.4 0.057 13.7 0.3 1.1 1 0 0 1 1 1 0 YtxH-like protein Syntaxin-6_N PF09177.6 gi|389848890|ref|YP_006351126.1| - 0.049 14.0 0.5 0.058 13.8 0.3 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Prefoldin_2 PF01920.15 gi|389848890|ref|YP_006351126.1| - 0.05 13.3 0.3 0.053 13.2 0.2 1.2 1 0 0 1 1 1 0 Prefoldin subunit BMFP PF04380.8 gi|389848890|ref|YP_006351126.1| - 0.061 13.4 0.6 0.094 12.8 0.2 1.4 1 1 1 2 2 2 0 Membrane fusogenic activity TBCA PF02970.11 gi|389848890|ref|YP_006351126.1| - 0.064 13.3 0.4 0.1 12.7 0.3 1.3 1 1 0 1 1 1 0 Tubulin binding cofactor A THDPS_N_2 PF14805.1 gi|389848890|ref|YP_006351126.1| - 0.072 12.9 0.4 0.091 12.6 0.3 1.3 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal LacI PF00356.16 gi|389848890|ref|YP_006351126.1| - 0.095 12.3 0.2 0.18 11.4 0.1 1.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, lacI family DUF677 PF05055.7 gi|389848890|ref|YP_006351126.1| - 0.1 11.2 0.6 0.11 11.1 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF1664 PF07889.7 gi|389848890|ref|YP_006351126.1| - 0.11 12.3 0.2 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) PEP-utilisers_N PF05524.8 gi|389848890|ref|YP_006351126.1| - 0.11 12.3 0.4 0.18 11.6 0.3 1.5 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal Aminotran_5 PF00266.14 gi|389848890|ref|YP_006351126.1| - 0.11 11.2 0.0 0.11 11.1 0.0 1.0 1 0 0 1 1 1 0 Aminotransferase class-V Vac_Fusion PF02346.11 gi|389848890|ref|YP_006351126.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.5 1 1 0 1 1 1 0 Chordopoxvirus fusion protein Med9 PF07544.8 gi|389848890|ref|YP_006351126.1| - 0.12 12.0 0.5 0.13 11.9 0.3 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Vps53_N PF04100.7 gi|389848890|ref|YP_006351126.1| - 0.15 10.7 0.8 0.17 10.6 0.5 1.0 1 0 0 1 1 1 0 Vps53-like, N-terminal DUF4404 PF14357.1 gi|389848890|ref|YP_006351126.1| - 0.28 11.6 1.6 0.44 10.9 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) Osmo_CC PF08946.5 gi|389848890|ref|YP_006351126.1| - 0.31 11.0 2.7 0.42 10.6 1.9 1.5 1 1 0 1 1 1 0 Osmosensory transporter coiled coil AP_endonuc_2 PF01261.19 gi|389848891|ref|YP_006351127.1| - 1e-29 103.4 0.6 1.3e-29 103.0 0.4 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribonuc_red_lgC PF02867.10 gi|389848892|ref|YP_006351128.1| - 9.9e-147 489.7 0.0 5.7e-104 348.6 0.0 2.7 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|389848892|ref|YP_006351128.1| - 1.5e-25 88.8 0.0 2.9e-25 87.8 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain NRDD PF13597.1 gi|389848892|ref|YP_006351128.1| - 0.2 9.6 0.0 0.31 9.0 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Sod_Fe_C PF02777.13 gi|389848893|ref|YP_006351129.1| - 8.3e-33 112.4 0.1 1.2e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|389848893|ref|YP_006351129.1| - 1.5e-29 102.0 0.3 1.5e-29 102.0 0.2 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Thiolase_N PF00108.18 gi|389848894|ref|YP_006351130.1| - 2.8e-13 49.4 3.1 5.9e-13 48.3 0.4 2.1 1 1 1 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389848894|ref|YP_006351130.1| - 1.2e-09 37.6 1.2 1.2e-09 37.6 0.8 2.7 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|389848894|ref|YP_006351130.1| - 1.3e-07 31.3 7.3 1.2e-05 24.9 3.0 2.9 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|389848894|ref|YP_006351130.1| - 0.0034 17.2 4.6 0.034 13.9 1.4 3.0 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain DDE_Tnp_1_7 PF13843.1 gi|389848894|ref|YP_006351130.1| - 0.2 10.6 0.0 0.43 9.5 0.0 1.4 2 0 0 2 2 2 0 Transposase IS4 DUF35 PF01796.12 gi|389848895|ref|YP_006351131.1| - 2.5e-14 53.2 0.0 3.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|389848895|ref|YP_006351131.1| - 1.6e-05 24.6 2.4 2.6e-05 24.0 1.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|389848895|ref|YP_006351131.1| - 0.0095 15.7 0.8 0.015 15.1 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|389848895|ref|YP_006351131.1| - 0.018 14.3 0.4 0.54 9.6 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|389848895|ref|YP_006351131.1| - 0.033 13.9 2.0 0.58 9.9 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FdhE PF04216.7 gi|389848895|ref|YP_006351131.1| - 0.039 13.6 0.1 0.051 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF2296 PF10058.4 gi|389848895|ref|YP_006351131.1| - 0.061 13.0 0.9 0.65 9.7 0.5 2.5 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) NOB1_Zn_bind PF08772.6 gi|389848895|ref|YP_006351131.1| - 0.23 11.2 1.8 2.3 8.0 1.2 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|389848895|ref|YP_006351131.1| - 0.25 11.3 3.1 19 5.2 2.9 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DUF1936 PF09151.5 gi|389848895|ref|YP_006351131.1| - 0.28 10.7 1.4 3.1 7.3 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) Zn_Tnp_IS1595 PF12760.2 gi|389848895|ref|YP_006351131.1| - 0.65 9.8 2.7 2.5 7.9 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|389848895|ref|YP_006351131.1| - 1.1 9.0 5.3 62 3.3 0.5 2.5 1 1 1 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|389848895|ref|YP_006351131.1| - 1.3 8.3 5.0 2.1 7.6 0.3 2.2 1 1 2 3 3 3 0 zinc-ribbon domain HAD PF12710.2 gi|389848896|ref|YP_006351132.1| - 1.3e-19 71.1 0.0 2e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389848896|ref|YP_006351132.1| - 1.1e-12 48.8 0.3 2.3e-08 34.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|389848896|ref|YP_006351132.1| - 1.1e-08 34.9 0.1 8.6e-05 22.2 0.0 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|389848896|ref|YP_006351132.1| - 4.9e-06 26.8 0.0 8.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|389848896|ref|YP_006351132.1| - 0.021 14.6 0.0 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF1009 PF06230.6 gi|389848896|ref|YP_006351132.1| - 0.05 12.9 0.1 0.07 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1009) TF_AP-2 PF03299.9 gi|389848896|ref|YP_006351132.1| - 0.092 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Transcription factor AP-2 Put_Phosphatase PF06888.7 gi|389848896|ref|YP_006351132.1| - 0.11 11.6 0.0 0.23 10.5 0.0 1.5 2 0 0 2 2 2 0 Putative Phosphatase CBS PF00571.23 gi|389848897|ref|YP_006351133.1| - 7.8e-36 121.6 11.9 3.5e-12 45.9 0.3 4.3 4 0 0 4 4 4 4 CBS domain DUF1131 PF06572.7 gi|389848897|ref|YP_006351133.1| - 0.057 12.9 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) Usp PF00582.21 gi|389848899|ref|YP_006351135.1| - 1.7e-64 216.2 12.6 7e-34 117.0 2.8 2.0 2 0 0 2 2 2 2 Universal stress protein family AP_endonuc_2 PF01261.19 gi|389848899|ref|YP_006351135.1| - 0.00034 19.9 9.9 0.37 10.0 0.3 3.9 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Lactamase_B_4 PF13691.1 gi|389848899|ref|YP_006351135.1| - 0.0013 18.1 0.2 0.29 10.6 0.0 2.5 2 0 0 2 2 2 1 tRNase Z endonuclease Peripla_BP_4 PF13407.1 gi|389848899|ref|YP_006351135.1| - 0.0035 16.7 5.7 0.073 12.4 1.7 2.6 2 1 1 3 3 3 2 Periplasmic binding protein domain Toprim_3 PF13362.1 gi|389848899|ref|YP_006351135.1| - 0.0077 16.4 8.3 0.38 11.0 0.1 3.9 2 2 2 4 4 4 1 Toprim domain DUF3197 PF11432.3 gi|389848899|ref|YP_006351135.1| - 0.0096 15.9 0.2 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3197) DRTGG PF07085.7 gi|389848899|ref|YP_006351135.1| - 0.079 12.5 1.9 8.8 5.9 0.0 4.1 3 2 1 4 4 4 0 DRTGG domain SRP54 PF00448.17 gi|389848899|ref|YP_006351135.1| - 0.08 12.3 0.5 2.7 7.4 0.0 2.5 1 1 0 2 2 2 0 SRP54-type protein, GTPase domain PA PF02225.17 gi|389848899|ref|YP_006351135.1| - 0.096 12.3 1.1 1.4 8.6 0.1 2.6 1 1 1 2 2 2 0 PA domain Bac_thur_toxin PF01338.13 gi|389848899|ref|YP_006351135.1| - 0.1 11.7 0.4 1.1 8.4 0.1 2.0 2 0 0 2 2 2 0 Bacillus thuringiensis toxin Complex1_51K PF01512.12 gi|389848902|ref|YP_006351138.1| - 1.6e-21 76.6 0.0 2.4e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|389848902|ref|YP_006351138.1| - 9.2e-06 25.3 0.2 1.9e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|389848902|ref|YP_006351138.1| - 0.0039 17.0 0.0 0.0082 16.0 0.0 1.6 1 0 0 1 1 1 1 SLBB domain DDE_Tnp_IS1595 PF12762.2 gi|389848903|ref|YP_006351139.1| - 1.6e-10 41.0 0.0 2.5e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain HTH_38 PF13936.1 gi|389848903|ref|YP_006351139.1| - 0.0031 17.0 0.2 0.0089 15.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389848903|ref|YP_006351139.1| - 0.032 13.9 1.2 0.08 12.6 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain OrfB_Zn_ribbon PF07282.6 gi|389848903|ref|YP_006351139.1| - 0.071 12.7 1.3 0.19 11.4 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|389848903|ref|YP_006351139.1| - 0.22 10.7 2.6 0.67 9.2 1.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|389848903|ref|YP_006351139.1| - 0.32 10.5 2.4 1 8.8 1.7 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HD_4 PF13328.1 gi|389848904|ref|YP_006351140.1| - 1.9e-10 40.6 0.0 2.6e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|389848904|ref|YP_006351140.1| - 0.0027 17.6 0.3 0.0053 16.7 0.2 1.4 1 0 0 1 1 1 1 HD domain DUF4097 PF13349.1 gi|389848905|ref|YP_006351141.1| - 0.0016 18.0 0.6 0.0016 18.0 0.4 5.2 1 1 4 5 5 5 1 Domain of unknown function (DUF4097) DUF3868 PF12984.2 gi|389848905|ref|YP_006351141.1| - 0.017 14.6 6.0 23 4.5 0.0 5.8 4 3 2 7 7 7 0 Domain of unknown function, B. Theta Gene description (DUF3868) DUF3761 PF12587.3 gi|389848905|ref|YP_006351141.1| - 0.26 11.4 0.6 0.96 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3761) DUF2807 PF10988.3 gi|389848905|ref|YP_006351141.1| - 1.4 8.3 13.3 0.13 11.7 1.2 3.9 2 2 1 3 3 3 0 Protein of unknown function (DUF2807) CS PF04969.11 gi|389848905|ref|YP_006351141.1| - 5.1 7.7 9.2 9.1 6.9 0.4 4.4 4 2 2 6 6 6 0 CS domain SBP_bac_1 PF01547.20 gi|389848906|ref|YP_006351142.1| - 3.3e-21 76.3 2.9 1.2e-20 74.4 2.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|389848906|ref|YP_006351142.1| - 1.2e-17 64.6 0.1 1.6e-17 64.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HATPase_c PF02518.21 gi|389848907|ref|YP_006351143.1| - 3.6e-27 94.2 0.0 7.3e-27 93.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|389848907|ref|YP_006351143.1| - 1.7e-13 50.4 0.0 1.3e-12 47.6 0.0 2.3 2 0 0 2 2 2 1 PAS fold HAMP PF00672.20 gi|389848907|ref|YP_006351143.1| - 2.1e-11 43.8 0.3 7.4e-11 42.0 0.2 2.0 1 0 0 1 1 1 1 HAMP domain PAS PF00989.19 gi|389848907|ref|YP_006351143.1| - 3.6e-10 39.6 0.0 2.1e-09 37.1 0.0 2.3 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|389848907|ref|YP_006351143.1| - 3.7e-10 39.6 0.7 1e-09 38.2 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|389848907|ref|YP_006351143.1| - 9.5e-09 35.5 0.0 6.7e-08 32.8 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|389848907|ref|YP_006351143.1| - 2.4e-08 34.0 0.0 2.6e-07 30.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|389848907|ref|YP_006351143.1| - 1.2e-05 24.9 0.0 5e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|389848907|ref|YP_006351143.1| - 0.0013 18.5 0.0 0.0028 17.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|389848907|ref|YP_006351143.1| - 0.012 15.2 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FxsA PF04186.8 gi|389848907|ref|YP_006351143.1| - 0.027 14.0 0.3 0.064 12.8 0.2 1.6 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein Abhydrolase_6 PF12697.2 gi|389848908|ref|YP_006351144.1| - 1.4e-26 93.8 4.4 1.6e-26 93.5 3.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848908|ref|YP_006351144.1| - 2.7e-15 56.3 0.0 3.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848908|ref|YP_006351144.1| - 7.5e-07 28.9 0.0 2.1e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|389848908|ref|YP_006351144.1| - 0.0012 18.6 0.0 0.0064 16.3 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein Abhydrolase_8 PF06259.7 gi|389848908|ref|YP_006351144.1| - 0.04 13.4 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase DUF2064 PF09837.4 gi|389848908|ref|YP_006351144.1| - 0.09 12.3 0.1 0.91 9.1 0.0 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) HrpE PF06188.7 gi|389848908|ref|YP_006351144.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E TrkA_N PF02254.13 gi|389848909|ref|YP_006351145.1| - 1.1e-40 138.2 8.8 1.1e-20 73.7 0.7 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|389848909|ref|YP_006351145.1| - 5.5e-27 93.1 3.3 2.4e-12 46.2 0.2 3.2 3 0 0 3 3 3 2 TrkA-C domain 2-Hacid_dh_C PF02826.14 gi|389848909|ref|YP_006351145.1| - 0.0017 17.5 0.0 0.0036 16.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ion_trans_2 PF07885.11 gi|389848909|ref|YP_006351145.1| - 0.0074 15.9 1.1 0.015 15.0 0.8 1.4 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.16 gi|389848909|ref|YP_006351145.1| - 0.0084 15.9 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|389848909|ref|YP_006351145.1| - 0.01 15.4 0.1 0.021 14.3 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2117 PF09890.4 gi|389848909|ref|YP_006351145.1| - 0.081 12.1 1.9 0.13 11.4 0.4 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2117) IlvN PF07991.7 gi|389848909|ref|YP_006351145.1| - 0.12 11.7 1.7 0.51 9.6 0.0 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain TPP_enzyme_C PF02775.16 gi|389848910|ref|YP_006351146.1| - 2.7e-31 108.1 0.7 5.1e-31 107.3 0.5 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|389848910|ref|YP_006351146.1| - 2.8e-31 108.0 1.3 4.1e-31 107.5 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|389848910|ref|YP_006351146.1| - 4.4e-30 104.4 0.0 7.9e-29 100.3 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|389848910|ref|YP_006351146.1| - 0.16 10.9 0.1 0.34 9.7 0.1 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Epimerase PF01370.16 gi|389848911|ref|YP_006351147.1| - 9.3e-44 149.6 0.5 1.2e-43 149.2 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389848911|ref|YP_006351147.1| - 6.8e-24 84.0 0.0 8.4e-24 83.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|389848911|ref|YP_006351147.1| - 3.5e-18 65.5 0.6 4.8e-18 65.0 0.4 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|389848911|ref|YP_006351147.1| - 2.5e-13 49.5 0.0 2e-11 43.3 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|389848911|ref|YP_006351147.1| - 6.4e-12 45.8 0.4 8.8e-12 45.3 0.3 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|389848911|ref|YP_006351147.1| - 7.9e-11 41.3 1.3 1.3e-09 37.3 0.9 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|389848911|ref|YP_006351147.1| - 7e-09 35.8 1.3 1.2e-08 35.0 0.9 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|389848911|ref|YP_006351147.1| - 3e-07 30.2 0.7 5.6e-07 29.3 0.5 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|389848911|ref|YP_006351147.1| - 7.6e-05 22.0 0.5 0.00011 21.5 0.2 1.4 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.13 gi|389848911|ref|YP_006351147.1| - 0.029 14.0 0.1 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aldolase_2 PF10120.4 gi|389848911|ref|YP_006351147.1| - 0.052 12.9 0.2 0.62 9.4 0.0 2.1 2 0 0 2 2 2 0 Putative aldolase 2-Hacid_dh_C PF02826.14 gi|389848911|ref|YP_006351147.1| - 0.075 12.1 0.1 0.15 11.2 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HD PF01966.17 gi|389848912|ref|YP_006351148.1| - 5.4e-10 39.3 0.2 8.7e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 HD domain EthD PF07110.6 gi|389848913|ref|YP_006351149.1| - 1.1e-23 84.0 12.9 7.9e-12 45.9 1.1 3.8 2 2 0 2 2 2 2 EthD domain DUF4543 PF15076.1 gi|389848913|ref|YP_006351149.1| - 0.0042 17.0 1.1 2.5 8.2 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4543) DnaG_DnaB_bind PF08278.6 gi|389848913|ref|YP_006351149.1| - 0.009 16.2 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 1 DNA primase DnaG DnaB-binding ABM PF03992.11 gi|389848913|ref|YP_006351149.1| - 0.043 13.8 0.8 3.6 7.6 0.0 2.9 3 0 0 3 3 3 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.19 gi|389848914|ref|YP_006351150.1| - 1.3e-26 93.5 0.1 1.9e-26 92.9 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|389848914|ref|YP_006351150.1| - 0.00011 22.6 0.0 0.00019 21.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF433 PF04255.9 gi|389848914|ref|YP_006351150.1| - 0.019 14.4 0.0 0.059 12.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Transket_pyr PF02779.19 gi|389848915|ref|YP_006351151.1| - 1.1e-48 165.1 0.0 1.4e-48 164.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|389848915|ref|YP_006351151.1| - 3.2e-33 114.3 0.1 7.4e-33 113.1 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|389848916|ref|YP_006351152.1| - 8.3e-83 277.5 0.0 9.9e-83 277.2 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|389848916|ref|YP_006351152.1| - 8.5e-09 34.7 0.0 1.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|389848916|ref|YP_006351152.1| - 1.2e-08 34.1 0.2 2.1e-08 33.3 0.1 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|389848916|ref|YP_006351152.1| - 8.7e-05 22.1 0.1 0.0005 19.6 0.1 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XH PF03469.9 gi|389848916|ref|YP_006351152.1| - 0.039 13.5 0.2 0.082 12.5 0.1 1.6 1 0 0 1 1 1 0 XH domain YqhG PF11079.3 gi|389848916|ref|YP_006351152.1| - 0.3 9.8 1.4 0.49 9.1 1.0 1.2 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function SNF PF00209.13 gi|389848917|ref|YP_006351153.1| - 7.1e-50 169.9 30.7 3.5e-25 88.4 6.4 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Aminotran_1_2 PF00155.16 gi|389848918|ref|YP_006351154.1| - 1.2e-59 202.1 0.0 1.3e-59 201.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|389848918|ref|YP_006351154.1| - 6.3e-15 55.0 0.1 9.6e-15 54.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|389848918|ref|YP_006351154.1| - 1.1e-09 37.8 0.0 2.5e-09 36.7 0.0 1.4 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|389848918|ref|YP_006351154.1| - 4.4e-08 32.2 0.0 6.5e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|389848918|ref|YP_006351154.1| - 3.6e-06 25.5 0.0 5.2e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aldedh PF00171.17 gi|389848919|ref|YP_006351155.1| - 8.7e-136 452.9 0.0 9.8e-136 452.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.13 gi|389848920|ref|YP_006351156.1| - 2.6e-33 114.4 0.1 1.5e-32 111.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|389848920|ref|YP_006351156.1| - 3.2e-07 29.8 0.2 8.4e-07 28.4 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|389848920|ref|YP_006351156.1| - 3.8e-07 29.8 1.4 6.9e-07 28.9 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389848920|ref|YP_006351156.1| - 2.7e-06 26.6 0.2 1.3e-05 24.4 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389848920|ref|YP_006351156.1| - 6.1e-06 25.7 0.3 4e-05 23.1 0.1 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|389848920|ref|YP_006351156.1| - 7.9e-06 25.4 0.1 2e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|389848920|ref|YP_006351156.1| - 3.1e-05 23.5 0.1 6.2e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|389848920|ref|YP_006351156.1| - 0.00022 20.8 0.0 0.00074 19.1 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|389848920|ref|YP_006351156.1| - 0.0014 18.1 0.6 0.0032 16.9 0.1 1.8 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|389848920|ref|YP_006351156.1| - 0.0018 17.9 0.0 0.0045 16.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|389848920|ref|YP_006351156.1| - 0.0047 16.8 0.1 0.034 14.1 0.0 2.2 2 1 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_38 PF13936.1 gi|389848920|ref|YP_006351156.1| - 0.012 15.1 0.1 0.029 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_32 PF13565.1 gi|389848920|ref|YP_006351156.1| - 0.039 14.7 2.1 0.17 12.6 0.2 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|389848920|ref|YP_006351156.1| - 0.046 13.2 0.3 0.16 11.5 0.1 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|389848920|ref|YP_006351156.1| - 0.081 12.6 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.7 gi|389848920|ref|YP_006351156.1| - 0.085 12.4 0.1 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_27 PF13463.1 gi|389848920|ref|YP_006351156.1| - 0.087 13.1 0.1 0.76 10.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.16 gi|389848920|ref|YP_006351156.1| - 0.1 12.0 0.0 0.27 10.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.11 gi|389848920|ref|YP_006351156.1| - 0.12 11.7 0.4 0.42 9.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 F420_oxidored PF03807.12 gi|389848921|ref|YP_006351157.1| - 5.8e-17 61.9 0.2 1.1e-16 60.9 0.1 1.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|389848921|ref|YP_006351157.1| - 0.00077 19.7 0.1 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|389848921|ref|YP_006351157.1| - 0.0013 18.7 0.2 0.0019 18.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding PDH PF02153.12 gi|389848921|ref|YP_006351157.1| - 0.0018 17.1 0.0 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|389848921|ref|YP_006351157.1| - 0.0024 17.6 0.1 0.0051 16.5 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.20 gi|389848921|ref|YP_006351157.1| - 0.036 13.9 3.3 0.11 12.3 0.6 2.3 1 1 0 2 2 2 0 short chain dehydrogenase KR PF08659.5 gi|389848921|ref|YP_006351157.1| - 0.046 13.3 0.3 0.22 11.1 0.1 2.0 2 1 0 2 2 2 0 KR domain DapB_N PF01113.15 gi|389848921|ref|YP_006351157.1| - 0.058 13.3 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus zf-FCS PF06467.9 gi|389848922|ref|YP_006351158.1| - 0.022 14.3 4.7 0.063 12.9 3.2 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|389848922|ref|YP_006351158.1| - 0.032 14.3 5.1 0.28 11.3 3.5 2.3 1 1 0 1 1 1 0 Archaeal TRASH domain zf-dskA_traR PF01258.12 gi|389848922|ref|YP_006351158.1| - 0.043 13.5 0.4 0.1 12.3 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Fer4_9 PF13187.1 gi|389848922|ref|YP_006351158.1| - 0.059 13.6 0.4 0.065 13.5 0.3 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain ZZ PF00569.12 gi|389848922|ref|YP_006351158.1| - 2 8.0 5.6 8.3 6.0 3.9 2.0 1 1 0 1 1 1 0 Zinc finger, ZZ type Acetyltransf_1 PF00583.19 gi|389848923|ref|YP_006351159.1| - 1.3e-11 44.3 0.0 3.5e-11 42.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848923|ref|YP_006351159.1| - 5.7e-10 39.3 0.0 9.2e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848923|ref|YP_006351159.1| - 5.2e-09 36.1 0.0 1.1e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848923|ref|YP_006351159.1| - 3.4e-06 26.9 0.0 1.1e-05 25.2 0.0 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848923|ref|YP_006351159.1| - 0.00026 20.7 0.0 0.00045 19.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|389848923|ref|YP_006351159.1| - 0.0019 18.1 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389848923|ref|YP_006351159.1| - 0.004 17.3 0.0 0.0065 16.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|389848923|ref|YP_006351159.1| - 0.0095 15.5 0.0 0.019 14.5 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DNA_RNApol_7kD PF03604.8 gi|389848923|ref|YP_006351159.1| - 0.012 15.0 1.3 0.02 14.3 0.9 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|389848923|ref|YP_006351159.1| - 0.21 11.1 0.6 0.33 10.4 0.4 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2182 PF09948.4 gi|389848924|ref|YP_006351160.1| - 4.3e-48 163.7 16.6 4.3e-48 163.7 11.5 1.5 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF1326 PF07040.6 gi|389848925|ref|YP_006351161.1| - 6.9e-34 117.2 0.1 7.9e-34 117.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1326) SUI1 PF01253.17 gi|389848926|ref|YP_006351162.1| - 3.8e-19 68.2 0.0 4.7e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DUF4479 PF14794.1 gi|389848926|ref|YP_006351162.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Acetyltransf_4 PF13420.1 gi|389848927|ref|YP_006351163.1| - 4e-15 56.0 0.1 6.4e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389848927|ref|YP_006351163.1| - 1.3e-11 44.3 0.1 3.1e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848927|ref|YP_006351163.1| - 7.3e-08 32.5 0.1 1.2e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848927|ref|YP_006351163.1| - 3.4e-06 27.1 0.0 8.5e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848927|ref|YP_006351163.1| - 2.8e-05 23.9 0.2 7.8e-05 22.5 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389848927|ref|YP_006351163.1| - 3.3e-05 24.0 0.1 5.4e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389848927|ref|YP_006351163.1| - 0.0004 20.2 0.0 0.001 18.9 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|389848927|ref|YP_006351163.1| - 0.011 15.7 0.2 0.047 13.6 0.2 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain ArsA_ATPase PF02374.10 gi|389848928|ref|YP_006351164.1| - 1.5e-74 250.7 0.0 1.7e-74 250.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|389848928|ref|YP_006351164.1| - 1.9e-12 46.9 0.1 2.3e-10 40.1 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389848928|ref|YP_006351164.1| - 2.3e-06 27.6 0.0 2.1e-05 24.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain ParA PF10609.4 gi|389848928|ref|YP_006351164.1| - 0.003 17.3 0.0 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like SRP54 PF00448.17 gi|389848928|ref|YP_006351164.1| - 0.0061 16.0 0.2 0.067 12.6 0.2 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|389848928|ref|YP_006351164.1| - 0.011 14.8 0.1 1.3 8.0 0.1 2.3 2 0 0 2 2 2 0 ATPase MipZ AAA_25 PF13481.1 gi|389848928|ref|YP_006351164.1| - 0.013 14.9 4.4 0.02 14.3 1.4 2.5 2 2 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|389848928|ref|YP_006351164.1| - 0.018 14.4 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|389848928|ref|YP_006351164.1| - 0.023 13.9 0.0 0.041 13.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.13 gi|389848928|ref|YP_006351164.1| - 0.026 13.7 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.1 gi|389848928|ref|YP_006351164.1| - 0.16 11.5 0.5 0.32 10.5 0.3 1.5 1 1 0 1 1 1 0 AAA domain Thiolase_N PF00108.18 gi|389848929|ref|YP_006351165.1| - 5.7e-79 264.8 0.0 2.5e-78 262.7 0.0 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389848929|ref|YP_006351165.1| - 2.1e-29 101.4 0.0 4e-29 100.5 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|389848929|ref|YP_006351165.1| - 0.015 14.8 3.0 0.04 13.3 0.1 2.7 3 0 0 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Rick_17kDa_Anti PF05433.10 gi|389848930|ref|YP_006351166.1| - 0.0059 16.2 4.7 0.016 14.8 3.3 1.7 1 0 0 1 1 1 1 Glycine zipper 2TM domain Saccharop_dh PF03435.13 gi|389848931|ref|YP_006351167.1| - 1e-20 74.1 0.1 1.5e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|389848931|ref|YP_006351167.1| - 2.8e-09 37.2 0.3 4.6e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|389848931|ref|YP_006351167.1| - 0.08 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyridox_oxidase PF01243.15 gi|389848932|ref|YP_006351168.1| - 2.5e-15 56.2 0.0 3.8e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|389848932|ref|YP_006351168.1| - 1.6e-07 31.2 0.1 2.2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PBP PF01161.15 gi|389848933|ref|YP_006351169.1| - 3e-35 121.1 0.1 3.7e-35 120.9 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein UPF0182 PF03699.8 gi|389848934|ref|YP_006351170.1| - 1.2e-268 893.1 11.3 3.1e-268 891.8 7.8 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0182) TF_Zn_Ribbon PF08271.7 gi|389848935|ref|YP_006351171.1| - 0.0017 17.6 0.2 0.0024 17.1 0.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-CCHC_4 PF14392.1 gi|389848935|ref|YP_006351171.1| - 0.04 13.5 0.2 0.065 12.9 0.1 1.2 1 0 0 1 1 1 0 Zinc knuckle Nudix_N_2 PF14803.1 gi|389848935|ref|YP_006351171.1| - 0.11 12.2 2.1 0.2 11.3 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|389848935|ref|YP_006351171.1| - 0.19 11.6 0.8 4.1 7.4 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Transpep_BrtH PF14399.1 gi|389848938|ref|YP_006351174.1| - 5.4e-46 157.3 0.0 6.1e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 NlpC/p60-like transpeptidase Peptidase_C39_2 PF13529.1 gi|389848938|ref|YP_006351174.1| - 0.00024 21.4 0.0 0.00069 19.9 0.0 1.8 1 1 0 1 1 1 1 Peptidase_C39 like family P5CR_dimer PF14748.1 gi|389848938|ref|YP_006351174.1| - 0.1 12.5 1.1 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Peptidase_C39 PF03412.10 gi|389848938|ref|YP_006351174.1| - 0.12 12.2 0.1 3.3 7.5 0.1 2.3 2 0 0 2 2 2 0 Peptidase C39 family Abhydrolase_1 PF00561.15 gi|389848939|ref|YP_006351175.1| - 5e-13 49.1 0.1 3.3e-12 46.4 0.1 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|389848939|ref|YP_006351175.1| - 6.7e-11 42.5 0.3 1.2e-10 41.6 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|389848939|ref|YP_006351175.1| - 1.2e-07 31.3 0.1 1.9e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DUF3141 PF11339.3 gi|389848939|ref|YP_006351175.1| - 2.7e-06 26.0 0.0 3.9e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) Abhydrolase_5 PF12695.2 gi|389848939|ref|YP_006351175.1| - 8.3e-06 25.6 0.0 4.4e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389848939|ref|YP_006351175.1| - 7.7e-05 22.0 0.0 0.16 11.2 0.0 2.7 3 0 0 3 3 3 2 Dienelactone hydrolase family FSH1 PF03959.8 gi|389848939|ref|YP_006351175.1| - 0.0012 18.3 0.0 0.046 13.1 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) PHB_depo_C PF06850.6 gi|389848939|ref|YP_006351175.1| - 0.087 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 PHB de-polymerase C-terminus HTH_34 PF13601.1 gi|389848940|ref|YP_006351176.1| - 0.0028 17.6 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|389848940|ref|YP_006351176.1| - 0.0029 17.1 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.9 gi|389848940|ref|YP_006351176.1| - 0.0031 17.2 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|389848940|ref|YP_006351176.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389848940|ref|YP_006351176.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF1705 PF08019.7 gi|389848941|ref|YP_006351177.1| - 0.27 10.7 4.2 6.3 6.2 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1705) AAA_16 PF13191.1 gi|389848942|ref|YP_006351178.1| - 0.0021 18.1 6.0 7 6.5 0.0 4.8 3 1 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.1 gi|389848942|ref|YP_006351178.1| - 0.0021 17.9 0.3 0.33 10.8 0.0 3.6 4 0 0 4 4 4 1 AAA domain AAA_17 PF13207.1 gi|389848942|ref|YP_006351178.1| - 0.01 16.6 0.2 16 6.2 0.0 4.0 4 0 0 4 4 4 0 AAA domain TPR_6 PF13174.1 gi|389848943|ref|YP_006351179.1| - 0.0037 17.6 12.6 11 6.7 0.3 9.8 12 0 0 12 12 12 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|389848943|ref|YP_006351179.1| - 0.044 14.1 40.0 22 5.4 0.8 14.2 15 2 1 16 16 16 0 Tetratricopeptide repeat TraF PF13728.1 gi|389848943|ref|YP_006351179.1| - 0.25 10.7 0.0 3.6 7.0 0.0 3.0 4 0 0 4 4 4 0 F plasmid transfer operon protein EthD PF07110.6 gi|389848944|ref|YP_006351180.1| - 0.097 13.6 0.0 0.14 13.1 0.0 1.2 1 0 0 1 1 1 0 EthD domain Beta_helix PF13229.1 gi|389848945|ref|YP_006351181.1| - 0.0011 18.7 5.4 0.0011 18.7 3.8 2.0 2 0 0 2 2 2 1 Right handed beta helix region BCA_ABC_TP_C PF12399.3 gi|389848945|ref|YP_006351181.1| - 1.6 8.4 6.7 0.7 9.6 0.3 2.8 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter PadR PF03551.9 gi|389848949|ref|YP_006351185.1| - 2.3e-16 59.2 0.7 3e-16 58.9 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389848949|ref|YP_006351185.1| - 2.3e-05 24.6 0.1 3e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389848949|ref|YP_006351185.1| - 0.00018 21.2 0.1 0.00022 20.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|389848949|ref|YP_006351185.1| - 0.0011 18.9 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|389848949|ref|YP_006351185.1| - 0.0045 16.6 0.0 0.0067 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HemN_C PF06969.11 gi|389848949|ref|YP_006351185.1| - 0.057 13.4 0.0 0.099 12.7 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain HSP20 PF00011.16 gi|389848951|ref|YP_006351187.1| - 3.5e-18 65.3 0.0 4.5e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|389848951|ref|YP_006351187.1| - 0.00026 20.5 0.0 0.00027 20.4 0.0 1.0 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 PRO8NT PF08082.6 gi|389848951|ref|YP_006351187.1| - 0.016 14.8 0.3 0.88 9.1 0.1 1.9 1 1 1 2 2 2 0 PRO8NT (NUC069), PrP8 N-terminal domain Peptidase_S8 PF00082.17 gi|389848954|ref|YP_006351190.1| - 8.8e-16 57.8 0.5 1.4e-15 57.1 0.3 1.3 1 0 0 1 1 1 1 Subtilase family ABC_tran PF00005.22 gi|389848955|ref|YP_006351191.1| - 6.9e-35 120.3 0.0 1e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389848955|ref|YP_006351191.1| - 1.6e-10 40.8 0.5 3.9e-10 39.5 0.4 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|389848955|ref|YP_006351191.1| - 1.3e-09 38.4 0.0 4.5e-06 26.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|389848955|ref|YP_006351191.1| - 0.00033 19.8 0.0 0.0017 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|389848955|ref|YP_006351191.1| - 0.0056 16.8 0.6 0.041 14.0 0.4 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|389848955|ref|YP_006351191.1| - 0.0078 16.2 0.1 0.024 14.7 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_33 PF13671.1 gi|389848955|ref|YP_006351191.1| - 0.012 15.5 0.4 0.087 12.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|389848955|ref|YP_006351191.1| - 0.024 13.3 0.0 0.032 12.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|389848955|ref|YP_006351191.1| - 0.043 13.9 1.7 0.18 11.9 1.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|389848955|ref|YP_006351191.1| - 0.06 14.1 2.6 0.23 12.2 1.8 2.3 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|389848955|ref|YP_006351191.1| - 0.069 12.8 0.2 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|389848955|ref|YP_006351191.1| - 0.073 13.0 2.5 0.26 11.2 1.7 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|389848955|ref|YP_006351191.1| - 0.08 12.8 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|389848955|ref|YP_006351191.1| - 0.089 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|389848955|ref|YP_006351191.1| - 0.11 11.6 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATP-synt_ab PF00006.20 gi|389848955|ref|YP_006351191.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|389848955|ref|YP_006351191.1| - 0.12 12.0 1.3 0.33 10.6 0.2 2.0 2 0 0 2 2 2 0 NACHT domain KaiC PF06745.8 gi|389848955|ref|YP_006351191.1| - 0.16 11.0 0.2 8.8 5.3 0.0 2.1 2 0 0 2 2 2 0 KaiC BPD_transp_1 PF00528.17 gi|389848956|ref|YP_006351192.1| - 8.7e-10 38.4 14.5 8.7e-10 38.4 10.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389848957|ref|YP_006351193.1| - 3.5e-10 39.6 19.2 3.5e-10 39.6 13.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|389848958|ref|YP_006351194.1| - 1.7e-23 83.2 0.2 2.8e-23 82.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|389848958|ref|YP_006351194.1| - 1.6e-21 77.2 3.1 1.6e-21 77.2 2.1 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389848958|ref|YP_006351194.1| - 8.6e-14 51.9 6.5 8.6e-14 51.9 4.5 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|389848958|ref|YP_006351194.1| - 6.8e-12 45.5 0.1 1.1e-11 44.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|389848958|ref|YP_006351194.1| - 5.7 6.1 7.6 0.38 9.9 0.8 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|389848958|ref|YP_006351194.1| - 6.6 7.0 13.1 0.059 13.4 1.7 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BCCT PF02028.12 gi|389848959|ref|YP_006351195.1| - 6e-110 367.7 54.7 7.4e-110 367.4 37.9 1.0 1 0 0 1 1 1 1 BCCT family transporter DUF1360 PF07098.6 gi|389848959|ref|YP_006351195.1| - 4.5 7.0 8.4 0.51 10.0 0.1 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1360) Fer2 PF00111.22 gi|389848960|ref|YP_006351196.1| - 1.5e-11 43.8 0.1 2e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|389848960|ref|YP_006351196.1| - 0.00048 19.8 0.2 0.0016 18.2 0.2 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UbiA PF01040.13 gi|389848961|ref|YP_006351197.1| - 3.6e-13 49.3 25.4 6.4e-13 48.5 17.6 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family FUSC-like PF12805.2 gi|389848961|ref|YP_006351197.1| - 0.28 10.0 1.1 0.62 8.9 0.8 1.6 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS Peptidase_S24 PF00717.18 gi|389848963|ref|YP_006351199.1| - 5.8e-08 32.2 0.0 1.3e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like EpuA PF11772.3 gi|389848963|ref|YP_006351199.1| - 7.5 6.0 9.3 13 5.2 0.6 2.6 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta Laminin_G_3 PF13385.1 gi|389848964|ref|YP_006351200.1| - 1.8e-17 64.0 0.2 1.8e-17 64.0 0.1 1.8 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.11 gi|389848964|ref|YP_006351200.1| - 0.18 10.7 0.0 0.36 9.7 0.0 1.4 1 0 0 1 1 1 0 Sialidase, N-terminal domain DUF2665 PF11654.3 gi|389848966|ref|YP_006351202.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) DUF4131 PF13567.1 gi|389848966|ref|YP_006351202.1| - 0.21 10.9 2.5 0.23 10.8 0.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ERp29_N PF07912.8 gi|389848967|ref|YP_006351203.1| - 0.042 13.7 0.1 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 ERp29, N-terminal domain Serglycin PF04360.7 gi|389848967|ref|YP_006351203.1| - 0.39 10.4 2.0 7.4 6.2 0.1 2.4 2 1 0 2 2 2 0 Serglycin Sporozoite_P67 PF05642.6 gi|389848969|ref|YP_006351205.1| - 0.00076 17.4 2.5 0.0008 17.4 1.8 1.1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen CDC45 PF02724.9 gi|389848969|ref|YP_006351205.1| - 0.0058 14.7 0.9 0.0066 14.5 0.6 1.1 1 0 0 1 1 1 1 CDC45-like protein DUF605 PF04652.11 gi|389848969|ref|YP_006351205.1| - 0.22 10.9 7.6 0.28 10.5 5.3 1.1 1 0 0 1 1 1 0 Vta1 like Nop14 PF04147.7 gi|389848969|ref|YP_006351205.1| - 3 5.6 13.4 3.7 5.3 9.3 1.0 1 0 0 1 1 1 0 Nop14-like family Rhomboid PF01694.17 gi|389848972|ref|YP_006351208.1| - 2.2e-07 30.9 19.2 0.00018 21.5 7.6 2.2 1 1 1 2 2 2 2 Rhomboid family OppC_N PF12911.2 gi|389848972|ref|YP_006351208.1| - 0.35 10.2 0.0 0.35 10.2 0.0 2.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C O-antigen_lig PF13425.1 gi|389848972|ref|YP_006351208.1| - 1.1 9.2 15.0 0.12 12.3 1.2 2.6 2 1 0 2 2 2 0 O-antigen ligase like membrane protein DUF2683 PF10884.3 gi|389848976|ref|YP_006351212.1| - 0.053 13.4 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) NifU PF01106.12 gi|389848977|ref|YP_006351213.1| - 2.2e-11 43.3 0.0 3e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain FRD2 PF03197.8 gi|389848977|ref|YP_006351213.1| - 0.077 13.5 0.0 0.45 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage FRD2 protein Fe_dep_repress PF01325.14 gi|389848978|ref|YP_006351214.1| - 4.4e-09 36.1 0.0 8.1e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|389848978|ref|YP_006351214.1| - 0.00062 19.3 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389848978|ref|YP_006351214.1| - 0.014 15.7 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repr_C PF02742.10 gi|389848978|ref|YP_006351214.1| - 0.044 13.4 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Rrf2 PF02082.15 gi|389848978|ref|YP_006351214.1| - 0.055 13.5 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Peripla_BP_2 PF01497.13 gi|389848981|ref|YP_006351217.1| - 2.6e-13 49.6 0.0 4.3e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein HEAT_2 PF13646.1 gi|389848982|ref|YP_006351218.1| - 1.5e-15 57.2 6.1 3e-05 24.2 0.0 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.1 gi|389848982|ref|YP_006351218.1| - 7e-10 39.1 8.8 0.093 13.2 0.0 5.4 1 1 4 5 5 5 5 HEAT-like repeat HEAT PF02985.17 gi|389848982|ref|YP_006351218.1| - 3.2e-07 29.8 8.4 0.36 11.0 0.0 5.7 6 0 0 6 6 6 2 HEAT repeat Adaptin_N PF01602.15 gi|389848982|ref|YP_006351218.1| - 1.2e-05 23.9 0.0 0.0002 19.8 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region DZR PF12773.2 gi|389848982|ref|YP_006351218.1| - 8.4e-05 22.3 0.4 0.00018 21.2 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389848982|ref|YP_006351218.1| - 0.00013 21.2 2.9 0.00027 20.3 2.0 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389848982|ref|YP_006351218.1| - 0.0045 16.1 4.4 0.22 10.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Cnd1 PF12717.2 gi|389848982|ref|YP_006351218.1| - 0.023 14.5 0.0 2.2 8.1 0.0 2.9 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 CM_2 PF01817.16 gi|389848982|ref|YP_006351218.1| - 0.083 12.9 0.0 0.28 11.2 0.0 1.9 1 0 0 1 1 1 0 Chorismate mutase type II UPF0547 PF10571.4 gi|389848982|ref|YP_006351218.1| - 3.3 7.4 6.1 3 7.6 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Reprolysin_2 PF13574.1 gi|389848984|ref|YP_006351220.1| - 0.01 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|389848984|ref|YP_006351220.1| - 0.023 15.1 0.0 0.055 13.9 0.0 1.7 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|389848984|ref|YP_006351220.1| - 0.025 14.0 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.3 gi|389848984|ref|YP_006351220.1| - 0.028 13.7 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.1 gi|389848984|ref|YP_006351220.1| - 0.059 13.2 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Astacin PF01400.19 gi|389848984|ref|YP_006351220.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Polyketide_cyc2 PF10604.4 gi|389848985|ref|YP_006351221.1| - 3.2e-08 33.8 0.8 4e-08 33.5 0.6 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_10 PF04967.7 gi|389848987|ref|YP_006351223.1| - 9.1e-14 50.7 0.1 1.6e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389848987|ref|YP_006351223.1| - 0.00045 19.6 0.2 0.0046 16.3 0.2 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389848987|ref|YP_006351223.1| - 0.0052 16.0 0.2 0.0098 15.1 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|389848987|ref|YP_006351223.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|389848987|ref|YP_006351223.1| - 0.015 14.6 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.14 gi|389848987|ref|YP_006351223.1| - 0.05 12.9 0.1 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|389848987|ref|YP_006351223.1| - 0.055 13.1 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|389848987|ref|YP_006351223.1| - 0.091 12.3 0.4 0.39 10.3 0.3 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|389848987|ref|YP_006351223.1| - 0.1 11.9 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Saccharop_dh PF03435.13 gi|389848988|ref|YP_006351224.1| - 1.4e-25 90.1 0.0 1.5e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|389848988|ref|YP_006351224.1| - 1.8e-08 34.5 0.6 4e-08 33.4 0.2 1.7 2 0 0 2 2 2 1 NADH(P)-binding KR PF08659.5 gi|389848988|ref|YP_006351224.1| - 2.3e-06 27.3 0.7 5.3e-06 26.2 0.3 1.7 2 0 0 2 2 2 1 KR domain adh_short PF00106.20 gi|389848988|ref|YP_006351224.1| - 4.3e-06 26.7 1.2 4.3e-06 26.7 0.8 1.8 2 0 0 2 2 2 1 short chain dehydrogenase Shikimate_DH PF01488.15 gi|389848988|ref|YP_006351224.1| - 9.2e-05 22.5 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|389848988|ref|YP_006351224.1| - 0.00016 21.9 0.0 0.00027 21.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|389848988|ref|YP_006351224.1| - 0.0068 15.8 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389848988|ref|YP_006351224.1| - 0.0093 14.6 0.0 0.034 12.8 0.0 1.8 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DapB_N PF01113.15 gi|389848988|ref|YP_006351224.1| - 0.015 15.2 0.0 0.034 14.0 0.0 1.6 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|389848988|ref|YP_006351224.1| - 0.038 14.3 0.2 0.14 12.5 0.0 2.0 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389848988|ref|YP_006351224.1| - 0.095 12.7 0.1 0.27 11.2 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|389848988|ref|YP_006351224.1| - 0.17 10.7 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein FaeA PF04703.7 gi|389848990|ref|YP_006351226.1| - 0.017 15.2 0.0 0.2 11.8 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein HTH_11 PF08279.7 gi|389848990|ref|YP_006351226.1| - 0.074 12.7 1.1 1.7 8.3 0.0 2.6 3 0 0 3 3 3 0 HTH domain TrmB PF01978.14 gi|389848990|ref|YP_006351226.1| - 0.085 12.5 0.0 0.65 9.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA_4 PF04326.9 gi|389848992|ref|YP_006351228.1| - 3.6e-11 43.2 0.0 6.8e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Divergent AAA domain DUF1447 PF07288.6 gi|389848992|ref|YP_006351228.1| - 0.027 14.2 0.8 0.14 11.9 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) DUF4309 PF14172.1 gi|389848992|ref|YP_006351228.1| - 0.042 13.8 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4309) LRR_8 PF13855.1 gi|389848994|ref|YP_006351230.1| - 0.066 12.9 0.0 0.22 11.3 0.0 1.9 2 0 0 2 2 2 0 Leucine rich repeat Integrase_1 PF12835.2 gi|389848995|ref|YP_006351231.1| - 1.7e-06 27.9 0.0 2.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Integrase Phage_integrase PF00589.17 gi|389848995|ref|YP_006351231.1| - 3.3e-05 23.6 0.0 5.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family DUF2971 PF11185.3 gi|389848996|ref|YP_006351232.1| - 0.00027 21.5 0.1 0.0021 18.7 0.1 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2971) DNA_RNApol_7kD PF03604.8 gi|389848998|ref|YP_006351234.1| - 0.0096 15.3 0.7 3.4 7.2 0.0 2.4 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit GH97_N PF14508.1 gi|389848999|ref|YP_006351235.1| - 8e-81 270.8 0.0 1.2e-80 270.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal Glyco_hydro_97 PF10566.4 gi|389848999|ref|YP_006351235.1| - 1.9e-80 269.8 0.0 3e-80 269.2 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 DUF2223 PF09985.4 gi|389848999|ref|YP_006351235.1| - 1.4e-40 139.0 0.1 2.5e-40 138.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) GH97_C PF14509.1 gi|389848999|ref|YP_006351235.1| - 3.7e-23 81.5 0.0 1.4e-15 57.2 0.0 2.9 2 0 0 2 2 2 2 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.10 gi|389848999|ref|YP_006351235.1| - 1.2e-09 38.4 1.1 1.2e-09 38.4 0.8 3.8 3 1 1 4 4 4 1 Carbohydrate binding module (family 6) BiPBP_C PF06832.7 gi|389848999|ref|YP_006351235.1| - 0.011 15.5 0.0 0.11 12.4 0.0 2.8 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family CARDB PF07705.6 gi|389848999|ref|YP_006351235.1| - 0.073 13.1 0.9 0.53 10.3 0.4 2.7 2 0 0 2 2 2 0 CARDB CarboxypepD_reg PF13620.1 gi|389848999|ref|YP_006351235.1| - 4.9 7.2 20.3 0.49 10.4 0.9 6.2 7 0 0 7 7 7 0 Carboxypeptidase regulatory-like domain HATPase_c PF02518.21 gi|389849000|ref|YP_006351236.1| - 1.8e-18 66.2 0.3 3.4e-18 65.3 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389849000|ref|YP_006351236.1| - 2.1e-13 50.0 1.9 2.1e-13 50.0 1.3 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|389849000|ref|YP_006351236.1| - 4.9e-08 32.9 0.0 1.3e-07 31.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|389849000|ref|YP_006351236.1| - 1.5e-07 31.4 0.1 3.6e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|389849000|ref|YP_006351236.1| - 3.3e-06 26.7 0.5 1.9e-05 24.3 0.0 2.5 3 0 0 3 3 3 1 PAS domain PAS PF00989.19 gi|389849000|ref|YP_006351236.1| - 7.2e-05 22.5 0.0 0.00025 20.8 0.0 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|389849000|ref|YP_006351236.1| - 0.00016 21.2 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|389849000|ref|YP_006351236.1| - 0.00071 19.9 0.0 0.0017 18.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PadR PF03551.9 gi|389849001|ref|YP_006351237.1| - 9.7e-10 38.0 0.1 1.2e-09 37.8 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|389849001|ref|YP_006351237.1| - 5.9e-06 26.0 0.0 7.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|389849001|ref|YP_006351237.1| - 0.0002 21.5 0.0 0.00029 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|389849001|ref|YP_006351237.1| - 0.0026 17.3 0.2 0.0035 16.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_12 PF08461.5 gi|389849001|ref|YP_006351237.1| - 0.0059 16.3 0.1 0.0086 15.7 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF4364 PF14277.1 gi|389849001|ref|YP_006351237.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) MotA_activ PF09114.5 gi|389849001|ref|YP_006351237.1| - 0.034 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Mrr_N PF14338.1 gi|389849001|ref|YP_006351237.1| - 0.068 13.2 1.9 0.1 12.6 0.2 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain Replic_Relax PF13814.1 gi|389849001|ref|YP_006351237.1| - 0.088 12.6 0.4 0.095 12.5 0.3 1.1 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.12 gi|389849001|ref|YP_006351237.1| - 0.099 12.2 0.2 0.27 10.8 0.1 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix AstE_AspA PF04952.9 gi|389849002|ref|YP_006351238.1| - 3.3e-12 45.8 0.0 7e-12 44.8 0.0 1.5 2 0 0 2 2 2 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|389849002|ref|YP_006351238.1| - 5.5e-05 22.9 0.1 0.08 12.5 0.0 2.2 2 0 0 2 2 2 2 Zinc carboxypeptidase DSBA PF01323.15 gi|389849002|ref|YP_006351238.1| - 0.013 15.0 0.0 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 DSBA-like thioredoxin domain NTP_transferase PF00483.18 gi|389849003|ref|YP_006351239.1| - 3.3e-37 128.1 0.0 4.6e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389849003|ref|YP_006351239.1| - 6.4e-15 55.5 0.1 1.1e-14 54.7 0.0 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|389849003|ref|YP_006351239.1| - 1.1e-12 46.7 18.2 0.00091 18.6 0.8 4.8 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|389849003|ref|YP_006351239.1| - 8.3e-06 25.4 0.1 1.3e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peripla_BP_6 PF13458.1 gi|389849003|ref|YP_006351239.1| - 0.015 14.6 0.2 0.029 13.7 0.1 1.4 1 1 0 1 1 1 0 Periplasmic binding protein Asn_synthase PF00733.16 gi|389849004|ref|YP_006351240.1| - 8.9e-07 28.6 0.0 2.5e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase SIS PF01380.17 gi|389849005|ref|YP_006351241.1| - 5.5e-41 139.2 0.5 2.3e-20 72.5 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|389849005|ref|YP_006351241.1| - 1.3e-24 86.6 0.1 2.8e-24 85.5 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|389849005|ref|YP_006351241.1| - 8.3e-20 70.7 0.1 4.1e-15 55.3 0.0 2.7 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|389849005|ref|YP_006351241.1| - 8.7e-20 70.7 0.0 1.6e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|389849005|ref|YP_006351241.1| - 2.5e-05 23.1 0.0 4.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|389849005|ref|YP_006351241.1| - 0.041 13.6 1.4 8.3 6.1 0.0 3.4 2 1 1 3 3 3 0 SIS domain PMT_2 PF13231.1 gi|389849006|ref|YP_006351242.1| - 3.8e-06 26.8 15.8 3.8e-06 26.8 11.0 4.0 4 2 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase ATPgrasp_Ter PF15632.1 gi|389849007|ref|YP_006351243.1| - 2.1e-62 210.8 0.0 2.3e-62 210.6 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|389849007|ref|YP_006351243.1| - 7.4e-12 45.3 0.0 1.3e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain TrkA_N PF02254.13 gi|389849007|ref|YP_006351243.1| - 0.028 14.4 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|389849007|ref|YP_006351243.1| - 0.07 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF354 PF04007.7 gi|389849008|ref|YP_006351244.1| - 4.8e-31 107.8 0.0 5.7e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|389849008|ref|YP_006351244.1| - 0.0015 18.3 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|389849008|ref|YP_006351244.1| - 0.012 15.3 0.1 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|389849008|ref|YP_006351244.1| - 0.023 14.4 0.1 0.039 13.7 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain B12-binding PF02310.14 gi|389849008|ref|YP_006351244.1| - 0.026 14.3 0.3 0.077 12.8 0.2 1.9 1 1 0 1 1 1 0 B12 binding domain Glyco_trans_4_4 PF13579.1 gi|389849008|ref|YP_006351244.1| - 0.03 14.4 3.4 0.054 13.6 0.3 2.3 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain UDPG_MGDP_dh_N PF03721.9 gi|389849009|ref|YP_006351245.1| - 1.2e-42 145.3 0.2 2.3e-42 144.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|389849009|ref|YP_006351245.1| - 2.8e-22 78.7 0.0 1e-21 76.9 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|389849009|ref|YP_006351245.1| - 1.1e-18 67.3 0.0 3e-18 65.9 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|389849009|ref|YP_006351245.1| - 1.2e-06 28.5 0.0 2.9e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|389849009|ref|YP_006351245.1| - 3.8e-05 23.4 0.0 0.00043 20.0 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|389849009|ref|YP_006351245.1| - 0.0017 17.5 0.1 0.079 12.1 0.0 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389849009|ref|YP_006351245.1| - 0.0027 17.6 3.0 0.027 14.4 0.0 3.3 3 2 1 4 4 4 1 TrkA-N domain 3HCDH_N PF02737.13 gi|389849009|ref|YP_006351245.1| - 0.0055 16.3 0.1 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|389849009|ref|YP_006351245.1| - 0.061 12.7 0.0 0.15 11.5 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Paralemmin PF03285.10 gi|389849009|ref|YP_006351245.1| - 0.063 12.7 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Paralemmin UDPG_MGDP_dh_N PF03721.9 gi|389849010|ref|YP_006351246.1| - 3.8e-35 120.9 0.0 6.1e-35 120.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|389849010|ref|YP_006351246.1| - 2.5e-19 69.3 0.0 6.8e-19 67.8 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|389849010|ref|YP_006351246.1| - 2.4e-14 53.3 0.3 6.3e-14 52.0 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|389849010|ref|YP_006351246.1| - 6.3e-06 26.1 0.0 5.6e-05 23.0 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|389849010|ref|YP_006351246.1| - 0.00019 21.2 0.0 0.00042 20.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|389849010|ref|YP_006351246.1| - 0.037 13.6 0.1 0.088 12.4 0.0 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Hexapep PF00132.19 gi|389849011|ref|YP_006351247.1| - 1.7e-28 96.8 20.0 6.6e-09 34.8 0.4 5.1 4 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389849011|ref|YP_006351247.1| - 4.4e-13 48.5 16.8 2.1e-05 24.0 0.1 5.3 4 1 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase DUF1616 PF07760.6 gi|389849012|ref|YP_006351248.1| - 4.2e-46 157.3 3.5 1.9e-38 132.2 2.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|389849012|ref|YP_006351248.1| - 0.02 14.2 2.8 1.9 7.8 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) NfeD PF01957.13 gi|389849012|ref|YP_006351248.1| - 1.4 9.0 13.7 0.16 12.1 0.8 3.1 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding DUF3040 PF11239.3 gi|389849012|ref|YP_006351248.1| - 1.5 8.9 14.2 1.3 9.1 1.6 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3040) RhodobacterPufX PF11511.3 gi|389849012|ref|YP_006351248.1| - 8.4 5.8 7.9 0.47 9.8 0.1 2.7 3 0 0 3 3 3 0 Intrinsic membrane protein PufX DUF457 PF04307.9 gi|389849013|ref|YP_006351249.1| - 1.1e-10 41.1 5.2 1.3e-10 40.7 3.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3154 PF11351.3 gi|389849013|ref|YP_006351249.1| - 0.1 12.3 0.8 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) Zn_dep_PLPC PF00882.13 gi|389849013|ref|YP_006351249.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.6 1 1 0 1 1 1 0 Zinc dependent phospholipase C Pectate_lyase_3 PF12708.2 gi|389849014|ref|YP_006351250.1| - 4.4e-06 26.9 7.2 6.6e-06 26.3 1.6 2.9 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|389849014|ref|YP_006351250.1| - 0.00037 20.2 9.8 0.038 13.7 3.0 3.5 1 1 2 3 3 3 3 Right handed beta helix region HTH_10 PF04967.7 gi|389849015|ref|YP_006351251.1| - 1e-17 63.4 0.0 1.8e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|389849015|ref|YP_006351251.1| - 2.1e-07 30.4 0.1 5e-07 29.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849015|ref|YP_006351251.1| - 1.1e-06 27.8 0.1 2e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|389849015|ref|YP_006351251.1| - 1.6e-06 27.3 0.0 4.9e-06 25.7 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Phage_CI_repr PF07022.8 gi|389849015|ref|YP_006351251.1| - 0.0004 20.3 0.1 0.005 16.8 0.0 2.2 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389849015|ref|YP_006351251.1| - 0.0019 17.7 1.0 0.0019 17.7 0.7 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|389849015|ref|YP_006351251.1| - 0.0023 17.3 0.9 0.0047 16.3 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|389849015|ref|YP_006351251.1| - 0.003 17.3 0.1 0.0058 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.1 gi|389849015|ref|YP_006351251.1| - 0.015 14.8 0.1 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|389849015|ref|YP_006351251.1| - 0.041 13.5 0.5 0.11 12.1 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|389849015|ref|YP_006351251.1| - 0.043 13.7 0.3 0.084 12.8 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|389849015|ref|YP_006351251.1| - 0.07 12.7 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_1 PF00126.22 gi|389849015|ref|YP_006351251.1| - 0.094 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Glycos_transf_2 PF00535.21 gi|389849016|ref|YP_006351252.1| - 1.2e-20 73.9 0.0 2.3e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389849016|ref|YP_006351252.1| - 1.2e-05 25.2 0.0 2.1e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|389849016|ref|YP_006351252.1| - 0.015 15.6 0.2 0.062 13.6 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase family 2 GLTT PF01744.15 gi|389849016|ref|YP_006351252.1| - 0.049 13.0 0.9 0.082 12.3 0.6 1.3 1 0 0 1 1 1 0 GLTT repeat (6 copies) Lig_chan-Glu_bd PF10613.4 gi|389849016|ref|YP_006351252.1| - 0.08 12.9 0.1 0.47 10.4 0.1 2.1 2 0 0 2 2 2 0 Ligated ion channel L-glutamate- and glycine-binding site Beta_helix PF13229.1 gi|389849017|ref|YP_006351253.1| - 1.7e-06 27.8 6.0 0.1 12.3 2.1 3.9 1 1 2 3 3 3 2 Right handed beta helix region Glycos_transf_1 PF00534.15 gi|389849018|ref|YP_006351254.1| - 1.5e-42 144.9 0.0 2.3e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|389849018|ref|YP_006351254.1| - 1.1e-22 80.6 0.1 3.5e-22 79.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389849018|ref|YP_006351254.1| - 1.3e-10 41.6 0.3 4.6e-10 39.8 0.0 2.1 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|389849018|ref|YP_006351254.1| - 3.1e-10 40.1 0.0 7.4e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|389849018|ref|YP_006351254.1| - 6.3e-06 26.0 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|389849018|ref|YP_006351254.1| - 0.0011 18.8 0.2 0.0029 17.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Polysacc_synt_C PF14667.1 gi|389849019|ref|YP_006351255.1| - 8e-14 51.6 12.9 8e-14 51.6 8.9 4.6 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|389849019|ref|YP_006351255.1| - 9.7e-08 31.5 22.3 9.7e-08 31.5 15.5 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|389849019|ref|YP_006351255.1| - 1.3e-07 30.4 15.3 2.5e-07 29.4 10.6 1.4 1 0 0 1 1 1 1 MviN-like protein SpoIIIAH PF12685.2 gi|389849020|ref|YP_006351256.1| - 0.19 11.1 6.2 0.22 10.9 4.3 1.0 1 0 0 1 1 1 0 SpoIIIAH-like protein Mucin PF01456.12 gi|389849020|ref|YP_006351256.1| - 0.7 9.6 23.8 1 9.1 16.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Glycos_transf_2 PF00535.21 gi|389849021|ref|YP_006351257.1| - 7.9e-40 136.2 0.1 1.1e-39 135.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389849021|ref|YP_006351257.1| - 2.5e-20 73.2 0.1 4.9e-20 72.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|389849021|ref|YP_006351257.1| - 5.7e-17 61.7 0.0 7.4e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|389849021|ref|YP_006351257.1| - 0.0001 22.1 0.0 0.00014 21.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|389849021|ref|YP_006351257.1| - 0.00086 19.5 0.1 0.0016 18.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|389849021|ref|YP_006351257.1| - 0.0019 17.5 0.0 0.0059 15.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 TPR_14 PF13428.1 gi|389849021|ref|YP_006351257.1| - 0.14 12.8 0.2 0.38 11.5 0.1 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat MarR_2 PF12802.2 gi|389849022|ref|YP_006351258.1| - 8.5e-06 25.3 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|389849022|ref|YP_006351258.1| - 3.2e-05 23.4 0.0 5.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389849022|ref|YP_006351258.1| - 6.1e-05 22.3 0.0 0.00011 21.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389849022|ref|YP_006351258.1| - 0.0014 18.3 0.1 0.0029 17.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389849022|ref|YP_006351258.1| - 0.0077 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|389849022|ref|YP_006351258.1| - 0.0084 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|389849022|ref|YP_006351258.1| - 0.06 13.2 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Adhesin_P1 PF03257.8 gi|389849022|ref|YP_006351258.1| - 0.072 13.4 6.2 0.5 10.7 0.4 2.9 2 1 0 2 2 2 0 Mycoplasma adhesin P1 EAP30 PF04157.11 gi|389849022|ref|YP_006351258.1| - 0.081 12.0 0.2 0.16 11.1 0.1 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Rrf2 PF02082.15 gi|389849022|ref|YP_006351258.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Pil1 PF13805.1 gi|389849023|ref|YP_006351259.1| - 0.034 13.2 0.5 3.6 6.6 0.1 2.0 1 1 1 2 2 2 0 Eisosome component PIL1 HTH_5 PF01022.15 gi|389849023|ref|YP_006351259.1| - 0.056 13.1 0.2 48 3.7 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Mrr_N PF14338.1 gi|389849023|ref|YP_006351259.1| - 0.06 13.4 0.1 0.14 12.2 0.0 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain Imm6 PF14434.1 gi|389849023|ref|YP_006351259.1| - 0.23 11.1 1.4 1.6 8.4 0.1 2.4 1 1 0 2 2 2 0 Immunity protein Imm6 GFO_IDH_MocA PF01408.17 gi|389849024|ref|YP_006351260.1| - 5.8e-25 88.1 0.1 9.9e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|389849024|ref|YP_006351260.1| - 2.6e-06 27.3 0.0 4.9e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|389849024|ref|YP_006351260.1| - 6.6e-06 26.4 0.0 1.4e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|389849024|ref|YP_006351260.1| - 8.6e-06 25.0 0.0 1.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|389849024|ref|YP_006351260.1| - 0.00024 20.5 0.2 0.00043 19.6 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|389849024|ref|YP_006351260.1| - 0.00026 21.4 0.1 0.00066 20.1 0.1 1.7 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|389849024|ref|YP_006351260.1| - 0.0016 18.7 0.1 0.0051 17.1 0.0 1.9 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|389849024|ref|YP_006351260.1| - 0.0038 16.0 0.2 0.0075 15.0 0.1 1.5 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA_C PF02894.12 gi|389849024|ref|YP_006351260.1| - 0.005 16.6 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|389849024|ref|YP_006351260.1| - 0.013 15.4 0.7 0.054 13.4 0.2 2.2 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Peptidase_A2B PF12384.3 gi|389849024|ref|YP_006351260.1| - 0.079 12.2 0.6 0.7 9.1 0.0 2.2 1 1 0 2 2 2 0 Ty3 transposon peptidase DegT_DnrJ_EryC1 PF01041.12 gi|389849025|ref|YP_006351261.1| - 5.9e-119 397.3 0.1 6.7e-119 397.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|389849025|ref|YP_006351261.1| - 2.5e-10 39.9 0.0 3.8e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|389849025|ref|YP_006351261.1| - 8.2e-09 34.8 0.0 1.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|389849025|ref|YP_006351261.1| - 2.6e-06 26.4 0.0 3.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|389849025|ref|YP_006351261.1| - 0.073 11.3 0.0 0.42 8.8 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|389849025|ref|YP_006351261.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain MarR_2 PF12802.2 gi|389849027|ref|YP_006351263.1| - 2.9e-06 26.8 0.2 3.7e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849027|ref|YP_006351263.1| - 0.00044 19.5 0.2 0.00062 19.0 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389849027|ref|YP_006351263.1| - 0.002 17.7 0.2 0.0028 17.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|389849027|ref|YP_006351263.1| - 0.013 15.1 0.2 0.016 14.8 0.1 1.1 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|389849027|ref|YP_006351263.1| - 0.02 14.4 1.0 0.033 13.7 0.7 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|389849027|ref|YP_006351263.1| - 0.082 12.5 0.2 0.11 12.1 0.2 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_31 PF13560.1 gi|389849027|ref|YP_006351263.1| - 0.16 12.1 0.8 0.39 10.9 0.5 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|389849028|ref|YP_006351264.1| - 9.6e-16 57.1 0.0 1.5e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|389849028|ref|YP_006351264.1| - 0.00034 20.2 0.0 0.00091 18.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849028|ref|YP_006351264.1| - 0.0031 16.8 0.1 0.0071 15.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|389849028|ref|YP_006351264.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|389849028|ref|YP_006351264.1| - 0.17 11.4 0.5 0.45 10.0 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain SprT-like PF10263.4 gi|389849029|ref|YP_006351265.1| - 8.2e-11 41.8 0.1 1.5e-10 40.9 0.0 1.5 1 1 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|389849029|ref|YP_006351265.1| - 0.045 13.8 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily DUF1469 PF07332.6 gi|389849030|ref|YP_006351266.1| - 0.1 12.2 1.7 0.12 12.0 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF805 PF05656.9 gi|389849030|ref|YP_006351266.1| - 0.11 12.2 0.6 0.15 11.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Peptidase_A24 PF01478.13 gi|389849030|ref|YP_006351266.1| - 0.31 11.2 5.9 0.35 11.0 4.1 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family OPT PF03169.10 gi|389849030|ref|YP_006351266.1| - 1.1 7.6 5.2 1.1 7.5 3.6 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF4229 PF14012.1 gi|389849030|ref|YP_006351266.1| - 1.8 8.5 6.4 2.3 8.1 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Tad PF13400.1 gi|389849030|ref|YP_006351266.1| - 5 7.2 6.4 7.9 6.6 0.5 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like AAA_23 PF13476.1 gi|389849031|ref|YP_006351267.1| - 1.1e-12 48.7 15.7 1.1e-12 48.7 10.9 3.8 1 1 1 2 2 1 1 AAA domain Cast PF10174.4 gi|389849031|ref|YP_006351267.1| - 4e-05 21.8 49.6 5.3e-05 21.4 34.4 1.2 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Spc7 PF08317.6 gi|389849031|ref|YP_006351267.1| - 0.00023 19.9 46.9 0.0029 16.3 10.9 3.3 2 1 1 3 3 3 3 Spc7 kinetochore protein AAA_13 PF13166.1 gi|389849031|ref|YP_006351267.1| - 0.00034 19.2 36.9 0.00051 18.6 9.5 2.8 2 1 1 3 3 3 1 AAA domain Fib_alpha PF08702.5 gi|389849031|ref|YP_006351267.1| - 0.0012 19.0 25.4 0.25 11.4 3.2 4.3 2 2 2 4 4 4 3 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|389849031|ref|YP_006351267.1| - 0.0015 17.6 23.1 0.0015 17.6 16.0 4.1 2 2 2 4 4 4 1 Autophagy protein Apg6 Reo_sigmaC PF04582.7 gi|389849031|ref|YP_006351267.1| - 0.0019 17.4 17.5 0.32 10.1 0.7 4.0 2 2 2 4 4 4 3 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|389849031|ref|YP_006351267.1| - 0.0022 18.2 25.5 0.53 10.5 0.2 6.6 3 2 2 5 5 4 1 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|389849031|ref|YP_006351267.1| - 0.012 15.6 54.7 0.076 13.0 8.3 5.3 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|389849031|ref|YP_006351267.1| - 0.012 14.8 49.1 0.47 9.6 9.0 3.6 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding MscS_porin PF12795.2 gi|389849031|ref|YP_006351267.1| - 0.04 13.2 52.8 0.18 11.0 14.3 3.4 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain Rop PF01815.11 gi|389849031|ref|YP_006351267.1| - 0.088 12.2 0.1 0.088 12.2 0.1 4.4 4 2 0 5 5 5 0 Rop protein Baculo_PEP_C PF04513.7 gi|389849031|ref|YP_006351267.1| - 0.15 11.8 18.3 0.38 10.5 3.5 4.7 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus SMC_N PF02463.14 gi|389849031|ref|YP_006351267.1| - 0.15 11.2 0.0 0.15 11.2 0.0 2.7 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain BLOC1_2 PF10046.4 gi|389849031|ref|YP_006351267.1| - 0.15 12.1 34.1 0.56 10.3 3.3 6.3 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3584 PF12128.3 gi|389849031|ref|YP_006351267.1| - 0.47 7.7 59.3 0.062 10.6 16.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) ERM PF00769.14 gi|389849031|ref|YP_006351267.1| - 0.88 9.0 63.4 0.12 11.8 10.8 3.7 3 1 1 4 4 4 0 Ezrin/radixin/moesin family DUF3450 PF11932.3 gi|389849031|ref|YP_006351267.1| - 1.1 8.4 42.2 3.3 6.9 0.5 5.8 2 2 4 6 6 6 0 Protein of unknown function (DUF3450) Mnd1 PF03962.10 gi|389849031|ref|YP_006351267.1| - 1.5 8.4 52.5 1.3 8.6 9.6 4.8 2 2 3 5 5 5 0 Mnd1 family TBPIP PF07106.8 gi|389849031|ref|YP_006351267.1| - 2 7.9 48.4 0.87 9.1 3.3 5.1 2 2 4 6 6 6 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TPR_MLP1_2 PF07926.7 gi|389849031|ref|YP_006351267.1| - 3.5 7.3 51.5 11 5.7 16.1 4.8 2 2 0 3 3 3 0 TPR/MLP1/MLP2-like protein AAA_27 PF13514.1 gi|389849031|ref|YP_006351267.1| - 4.5 4.8 62.6 1.1 6.8 30.4 2.5 1 1 1 2 2 2 0 AAA domain DUF342 PF03961.8 gi|389849031|ref|YP_006351267.1| - 5.5 5.2 40.3 0.24 9.8 3.6 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF342) DUF1664 PF07889.7 gi|389849031|ref|YP_006351267.1| - 6.6 6.5 30.3 6.3 6.6 3.4 5.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Usp PF00582.21 gi|389849033|ref|YP_006351269.1| - 3.7e-07 30.4 16.5 3.7e-06 27.1 1.0 2.9 2 1 1 3 3 3 2 Universal stress protein family AA_permease_2 PF13520.1 gi|389849034|ref|YP_006351270.1| - 1.5e-50 171.9 42.9 1.9e-50 171.6 29.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|389849034|ref|YP_006351270.1| - 3.4e-43 147.6 43.9 4e-43 147.4 30.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|389849034|ref|YP_006351270.1| - 0.0034 17.2 1.7 0.0034 17.2 1.2 3.1 3 0 0 3 3 3 1 C-terminus of AA_permease DUF3487 PF11990.3 gi|389849034|ref|YP_006351270.1| - 0.025 13.9 0.7 0.025 13.9 0.5 4.8 4 1 2 6 6 6 0 Protein of unknown function (DUF3487) Phage_integrase PF00589.17 gi|389849035|ref|YP_006351271.1| - 5.6e-10 39.1 0.0 9.7e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Crp PF00325.15 gi|389849035|ref|YP_006351271.1| - 0.086 12.3 0.1 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family tRNA-synt_1b PF00579.20 gi|389849036|ref|YP_006351272.1| - 4.1e-25 88.4 0.0 2.1e-24 86.1 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|389849036|ref|YP_006351272.1| - 0.18 10.4 0.0 0.31 9.6 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (K) DDE_Tnp_1 PF01609.16 gi|389849037|ref|YP_006351273.1| - 1e-07 31.7 1.7 2.9e-07 30.2 1.2 1.8 1 1 0 1 1 1 1 Transposase DDE domain SnoaL PF07366.7 gi|389849038|ref|YP_006351274.1| - 1.6e-31 108.4 0.0 2e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|389849038|ref|YP_006351274.1| - 3.5e-24 85.1 0.0 4.4e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|389849038|ref|YP_006351274.1| - 1.9e-05 24.7 0.0 2.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|389849038|ref|YP_006351274.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain Scaffolding_pro PF11418.3 gi|389849038|ref|YP_006351274.1| - 0.16 12.3 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Phi29 scaffolding protein HTH_10 PF04967.7 gi|389849039|ref|YP_006351275.1| - 1.3e-12 47.1 0.0 3.4e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|389849039|ref|YP_006351275.1| - 0.0034 16.9 0.0 0.0091 15.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389849039|ref|YP_006351275.1| - 0.017 14.7 0.1 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 MarR family Sigma54_DBD PF04552.8 gi|389849039|ref|YP_006351275.1| - 0.041 13.3 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain UPF0122 PF04297.9 gi|389849039|ref|YP_006351275.1| - 0.046 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.17 gi|389849039|ref|YP_006351275.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|389849039|ref|YP_006351275.1| - 0.12 11.7 0.4 0.26 10.6 0.0 1.9 2 1 0 2 2 2 0 Sigma-70, region 4 Copper-bind PF00127.15 gi|389849041|ref|YP_006351277.1| - 4.5e-25 87.7 0.0 1.7e-11 44.1 0.0 2.9 2 1 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389849041|ref|YP_006351277.1| - 1.3e-05 25.0 0.0 0.076 12.9 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|389849041|ref|YP_006351277.1| - 0.017 15.0 1.1 0.042 13.8 0.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NAD_synthase PF02540.12 gi|389849042|ref|YP_006351278.1| - 8.6e-43 145.9 0.0 1.3e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.17 gi|389849042|ref|YP_006351278.1| - 1.7e-14 53.6 0.0 3.7e-14 52.5 0.0 1.6 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase Corona_nucleoca PF00937.13 gi|389849042|ref|YP_006351278.1| - 0.012 14.5 3.4 0.018 14.0 2.3 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Asn_synthase PF00733.16 gi|389849042|ref|YP_006351278.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase DUF2487 PF10673.4 gi|389849042|ref|YP_006351278.1| - 0.081 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) Peripla_BP_2 PF01497.13 gi|389849043|ref|YP_006351279.1| - 3.1e-16 59.2 0.0 4.4e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein HTH_AsnC-type PF13404.1 gi|389849044|ref|YP_006351280.1| - 1.1e-14 53.6 0.5 1.8e-14 52.9 0.4 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389849044|ref|YP_006351280.1| - 5.6e-14 51.2 1.2 2.9e-13 48.9 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389849044|ref|YP_006351280.1| - 9.8e-05 21.9 0.3 0.0002 20.9 0.2 1.5 1 1 0 1 1 1 1 HTH domain DUF603 PF04645.7 gi|389849044|ref|YP_006351280.1| - 0.00096 19.1 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF603 HTH_20 PF12840.2 gi|389849044|ref|YP_006351280.1| - 0.00097 18.9 0.8 0.007 16.1 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|389849044|ref|YP_006351280.1| - 0.0019 17.6 0.2 0.0045 16.4 0.1 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|389849044|ref|YP_006351280.1| - 0.0019 17.7 0.0 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389849044|ref|YP_006351280.1| - 0.0028 17.3 0.0 0.039 13.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|389849044|ref|YP_006351280.1| - 0.005 16.4 0.1 0.0084 15.7 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|389849044|ref|YP_006351280.1| - 0.0061 16.2 0.2 0.026 14.2 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389849044|ref|YP_006351280.1| - 0.011 15.4 0.1 0.039 13.6 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_7 PF02796.10 gi|389849044|ref|YP_006351280.1| - 0.015 15.1 0.0 0.035 13.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.7 gi|389849044|ref|YP_006351280.1| - 0.017 14.6 0.2 0.039 13.4 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|389849044|ref|YP_006351280.1| - 0.032 14.2 0.1 0.053 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|389849044|ref|YP_006351280.1| - 0.048 13.9 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF2582 PF10771.4 gi|389849044|ref|YP_006351280.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) AsnC_trans_reg PF01037.16 gi|389849044|ref|YP_006351280.1| - 0.071 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 AsnC family Rrf2 PF02082.15 gi|389849044|ref|YP_006351280.1| - 0.073 13.1 0.2 1.1 9.4 0.0 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_3 PF01381.17 gi|389849044|ref|YP_006351280.1| - 0.096 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Citrate_synt PF00285.16 gi|389849045|ref|YP_006351281.1| - 3.7e-118 394.3 0.0 4.1e-118 394.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase PKD PF00801.15 gi|389849046|ref|YP_006351282.1| - 7.4e-22 76.8 15.3 2.8e-11 43.0 1.1 3.8 4 0 0 4 4 4 2 PKD domain REJ PF02010.10 gi|389849046|ref|YP_006351282.1| - 1.6e-06 26.7 8.3 0.0066 14.8 0.9 3.1 1 1 1 3 3 3 3 REJ domain BiPBP_C PF06832.7 gi|389849046|ref|YP_006351282.1| - 2.8e-05 23.9 0.0 0.12 12.3 0.0 2.5 2 0 0 2 2 2 2 Penicillin-Binding Protein C-terminus Family HYR PF02494.11 gi|389849046|ref|YP_006351282.1| - 0.0053 16.7 3.0 0.025 14.5 0.3 2.7 2 0 0 2 2 2 1 HYR domain Cadherin-like PF12733.2 gi|389849046|ref|YP_006351282.1| - 0.054 13.7 1.6 6.4 7.1 0.1 2.9 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain TAT_signal PF10518.4 gi|389849046|ref|YP_006351282.1| - 0.11 12.6 0.3 0.11 12.6 0.2 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Big_3_4 PF13754.1 gi|389849046|ref|YP_006351282.1| - 0.2 12.0 16.8 0.7 10.2 0.2 3.7 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 3) TSP_3 PF02412.13 gi|389849046|ref|YP_006351282.1| - 0.22 11.0 5.0 3.8 7.0 0.7 3.0 2 0 0 2 2 2 0 Thrombospondin type 3 repeat FG-GAP PF01839.18 gi|389849046|ref|YP_006351282.1| - 0.74 9.5 15.9 8.7 6.1 0.9 4.2 3 0 0 3 3 3 0 FG-GAP repeat PEMT PF04191.8 gi|389849047|ref|YP_006351283.1| - 8.8e-19 67.5 0.7 8.8e-19 67.5 0.5 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|389849047|ref|YP_006351283.1| - 2e-05 23.9 0.1 2.8e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.9 gi|389849047|ref|YP_006351283.1| - 5.4e-05 23.3 0.4 0.00028 21.0 0.1 2.1 2 1 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|389849047|ref|YP_006351283.1| - 0.00029 19.4 0.1 0.00044 18.9 0.0 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.11 gi|389849047|ref|YP_006351283.1| - 0.014 15.2 0.3 0.018 14.8 0.2 1.2 1 0 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase DUF997 PF06196.7 gi|389849047|ref|YP_006351283.1| - 0.99 8.9 4.9 6 6.4 0.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF997) HTH_10 PF04967.7 gi|389849048|ref|YP_006351284.1| - 5.2e-16 57.9 0.0 7.8e-16 57.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.22 gi|389849048|ref|YP_006351284.1| - 0.086 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.22 gi|389849049|ref|YP_006351285.1| - 5.1e-32 111.0 0.0 8.4e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389849049|ref|YP_006351285.1| - 1.9e-14 54.3 0.0 7.3e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|389849049|ref|YP_006351285.1| - 1.9e-05 25.1 0.0 3.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|389849049|ref|YP_006351285.1| - 0.00016 21.6 0.0 0.00078 19.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|389849049|ref|YP_006351285.1| - 0.00053 19.1 0.0 0.4 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|389849049|ref|YP_006351285.1| - 0.0011 18.2 0.0 0.025 13.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389849049|ref|YP_006351285.1| - 0.0015 18.0 0.1 0.0031 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389849049|ref|YP_006351285.1| - 0.014 14.5 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|389849049|ref|YP_006351285.1| - 0.015 15.3 0.0 0.036 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|389849049|ref|YP_006351285.1| - 0.029 14.3 0.0 0.043 13.7 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase MukB PF04310.7 gi|389849049|ref|YP_006351285.1| - 0.029 13.6 0.0 0.043 13.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.1 gi|389849049|ref|YP_006351285.1| - 0.05 13.1 0.0 0.082 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|389849049|ref|YP_006351285.1| - 0.057 11.8 0.0 0.07 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|389849049|ref|YP_006351285.1| - 0.057 12.8 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|389849049|ref|YP_006351285.1| - 0.067 13.3 0.0 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|389849049|ref|YP_006351285.1| - 0.092 11.5 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC2_membrane_4 PF12730.2 gi|389849050|ref|YP_006351286.1| - 4.6e-11 42.3 14.9 4.6e-11 42.3 10.3 2.8 2 2 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389849050|ref|YP_006351286.1| - 8.1e-08 31.6 24.0 6.2e-07 28.7 8.8 2.4 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389849050|ref|YP_006351286.1| - 1.6e-05 23.9 10.3 1.6e-05 23.9 7.2 2.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389849050|ref|YP_006351286.1| - 0.0053 16.0 4.5 0.0053 16.0 3.1 2.3 2 0 0 2 2 2 1 ABC-2 family transporter protein Bac_luciferase PF00296.15 gi|389849051|ref|YP_006351287.1| - 4.6e-33 114.6 6.4 5.3e-33 114.4 4.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase CheB_methylest PF01339.12 gi|389849051|ref|YP_006351287.1| - 0.073 12.4 0.1 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 CheB methylesterase Na_H_antiporter PF03553.9 gi|389849052|ref|YP_006351288.1| - 1.7e-55 188.2 46.7 3.9e-53 180.4 16.4 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family ELFV_dehydrog PF00208.16 gi|389849054|ref|YP_006351290.1| - 2.2e-69 233.7 0.1 3e-69 233.2 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|389849054|ref|YP_006351290.1| - 4.2e-52 175.1 0.0 8.9e-52 174.1 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|389849054|ref|YP_006351290.1| - 0.00061 18.9 0.0 0.0015 17.6 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mrr_N PF14338.1 gi|389849055|ref|YP_006351291.1| - 0.022 14.8 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|389849055|ref|YP_006351291.1| - 0.12 12.7 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|389849056|ref|YP_006351292.1| - 5.1e-17 61.2 0.1 8e-17 60.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389849056|ref|YP_006351292.1| - 5.3e-07 29.0 0.1 0.013 14.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389849056|ref|YP_006351292.1| - 0.0002 20.5 0.1 0.00044 19.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|389849056|ref|YP_006351292.1| - 0.00077 18.7 0.0 0.005 16.1 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|389849056|ref|YP_006351292.1| - 0.0032 17.0 0.0 0.0056 16.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|389849056|ref|YP_006351292.1| - 0.0097 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TetR_N PF00440.18 gi|389849056|ref|YP_006351292.1| - 0.032 13.8 0.1 0.063 12.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family LexA_DNA_bind PF01726.11 gi|389849056|ref|YP_006351292.1| - 0.035 13.6 0.2 0.3 10.6 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain Sigma70_ECF PF07638.6 gi|389849056|ref|YP_006351292.1| - 0.063 12.9 0.0 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 ECF sigma factor HTH_20 PF12840.2 gi|389849056|ref|YP_006351292.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|389849056|ref|YP_006351292.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|389849056|ref|YP_006351292.1| - 0.15 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PfkB PF00294.19 gi|389849057|ref|YP_006351293.1| - 1.1e-47 162.7 0.1 1.3e-47 162.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldolase PF01081.14 gi|389849058|ref|YP_006351294.1| - 1e-41 142.3 2.3 1.1e-41 142.1 1.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.12 gi|389849058|ref|YP_006351294.1| - 0.00034 19.7 0.2 0.0026 16.9 0.2 2.2 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|389849058|ref|YP_006351294.1| - 0.0025 16.8 9.1 0.81 8.5 0.1 3.0 1 1 2 3 3 3 3 Dihydroorotate dehydrogenase QRPTase_C PF01729.14 gi|389849058|ref|YP_006351294.1| - 0.028 13.9 0.0 0.12 11.8 0.0 2.1 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.20 gi|389849058|ref|YP_006351294.1| - 0.21 10.4 8.6 0.034 13.0 0.8 2.5 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.7 gi|389849058|ref|YP_006351294.1| - 0.28 10.0 1.1 10 4.9 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF561) Ribonuc_L-PSP PF01042.16 gi|389849059|ref|YP_006351295.1| - 1.3e-40 137.8 0.0 1.5e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP adh_short_C2 PF13561.1 gi|389849060|ref|YP_006351296.1| - 2.1e-34 119.3 0.0 2.7e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|389849060|ref|YP_006351296.1| - 7.9e-30 103.9 0.1 9.8e-30 103.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|389849060|ref|YP_006351296.1| - 9.5e-11 41.6 0.2 1.3e-10 41.2 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389849060|ref|YP_006351296.1| - 0.00018 21.0 0.3 0.0005 19.5 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389849060|ref|YP_006351296.1| - 0.0029 17.6 0.6 0.0038 17.2 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|389849060|ref|YP_006351296.1| - 0.042 13.5 0.1 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|389849060|ref|YP_006351296.1| - 0.16 12.4 0.3 0.51 10.7 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent MR_MLE_C PF13378.1 gi|389849061|ref|YP_006351297.1| - 4.3e-20 71.7 0.1 2.3e-18 66.1 0.1 2.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|389849061|ref|YP_006351297.1| - 1.3e-16 60.6 0.0 2.8e-16 59.5 0.0 1.6 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|389849061|ref|YP_006351297.1| - 3.6e-14 53.0 1.4 5.9e-14 52.3 0.1 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF187 PF02638.10 gi|389849062|ref|YP_006351298.1| - 4.1e-05 22.6 0.0 7.1e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase like GH101 Cas_Csa5 PF09702.5 gi|389849062|ref|YP_006351298.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) BPD_transp_1 PF00528.17 gi|389849063|ref|YP_006351299.1| - 2.5e-18 66.2 17.2 2.5e-18 66.2 11.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389849064|ref|YP_006351300.1| - 2.9e-22 79.1 14.6 5.3e-22 78.2 9.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|389849065|ref|YP_006351301.1| - 1.2e-44 153.2 0.4 1.9e-44 152.7 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|389849065|ref|YP_006351301.1| - 2.1e-37 129.3 0.2 3.4e-37 128.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|389849065|ref|YP_006351301.1| - 0.00026 20.7 0.0 0.00043 19.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|389849065|ref|YP_006351301.1| - 0.00074 18.9 0.0 1.2 8.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389849065|ref|YP_006351301.1| - 0.25 11.4 0.2 0.25 11.4 0.2 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Creatininase PF02633.9 gi|389849066|ref|YP_006351302.1| - 6.9e-65 218.4 0.0 7.8e-65 218.2 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|389849067|ref|YP_006351303.1| - 1.6e-31 109.4 0.0 2.7e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389849067|ref|YP_006351303.1| - 1.3e-08 34.6 0.1 5.8e-08 32.6 0.0 2.2 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|389849067|ref|YP_006351303.1| - 1.8e-08 34.7 0.0 6.5e-06 26.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389849067|ref|YP_006351303.1| - 8.8e-06 25.1 0.1 1.7e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|389849067|ref|YP_006351303.1| - 0.00056 20.1 0.2 0.0047 17.1 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|389849067|ref|YP_006351303.1| - 0.00093 19.2 0.2 0.0021 18.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|389849067|ref|YP_006351303.1| - 0.0013 17.8 0.0 0.005 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389849067|ref|YP_006351303.1| - 0.0014 18.7 0.1 0.004 17.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|389849067|ref|YP_006351303.1| - 0.0016 17.1 0.0 0.0022 16.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|389849067|ref|YP_006351303.1| - 0.0019 18.0 0.2 0.0032 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389849067|ref|YP_006351303.1| - 0.0023 18.7 0.5 0.0073 17.1 0.1 2.2 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|389849067|ref|YP_006351303.1| - 0.0028 16.8 0.1 0.0057 15.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389849067|ref|YP_006351303.1| - 0.0066 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain Miro PF08477.8 gi|389849067|ref|YP_006351303.1| - 0.011 16.2 0.2 0.075 13.5 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_29 PF13555.1 gi|389849067|ref|YP_006351303.1| - 0.024 14.1 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389849067|ref|YP_006351303.1| - 0.026 13.9 0.0 0.28 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|389849067|ref|YP_006351303.1| - 0.034 13.7 0.1 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|389849067|ref|YP_006351303.1| - 0.059 13.3 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|389849067|ref|YP_006351303.1| - 0.073 12.7 0.2 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiA PF07688.7 gi|389849067|ref|YP_006351303.1| - 0.082 12.1 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 KaiA domain AAA_14 PF13173.1 gi|389849067|ref|YP_006351303.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|389849067|ref|YP_006351303.1| - 0.18 11.9 0.1 0.8 9.9 0.1 2.1 2 1 0 2 2 2 0 RNA helicase AAA_23 PF13476.1 gi|389849067|ref|YP_006351303.1| - 0.25 11.6 0.7 0.56 10.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain IclR PF01614.13 gi|389849069|ref|YP_006351305.1| - 3.6e-33 113.9 0.0 6.4e-33 113.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|389849069|ref|YP_006351305.1| - 2.3e-09 36.6 0.0 2.2e-08 33.5 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|389849069|ref|YP_006351305.1| - 7.1e-07 28.8 0.0 2.8e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389849069|ref|YP_006351305.1| - 5.3e-06 26.0 0.0 1.3e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389849069|ref|YP_006351305.1| - 9.5e-05 21.9 0.0 0.0023 17.5 0.0 2.8 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|389849069|ref|YP_006351305.1| - 0.00015 21.5 0.0 0.00063 19.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|389849069|ref|YP_006351305.1| - 0.00043 19.9 0.0 0.0013 18.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|389849069|ref|YP_006351305.1| - 0.0038 16.5 0.0 0.01 15.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|389849069|ref|YP_006351305.1| - 0.094 12.8 0.0 0.35 11.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.1 gi|389849069|ref|YP_006351305.1| - 0.11 12.5 0.0 0.29 11.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Abhydrolase_6 PF12697.2 gi|389849070|ref|YP_006351306.1| - 2.5e-28 99.5 0.4 3e-28 99.2 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389849070|ref|YP_006351306.1| - 7.9e-15 54.8 0.0 8.9e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389849070|ref|YP_006351306.1| - 1.3e-14 54.3 0.0 2.4e-14 53.4 0.0 1.4 2 0 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|389849070|ref|YP_006351306.1| - 1e-06 28.5 0.1 1.7e-06 27.7 0.1 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|389849070|ref|YP_006351306.1| - 0.00073 18.8 0.0 0.0034 16.6 0.0 1.8 1 1 1 2 2 2 1 Prolyl oligopeptidase family Esterase PF00756.15 gi|389849070|ref|YP_006351306.1| - 0.016 14.6 0.1 0.02 14.3 0.0 1.4 1 1 0 1 1 1 0 Putative esterase PGAP1 PF07819.8 gi|389849070|ref|YP_006351306.1| - 0.063 12.8 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Abhydrolase_6 PF12697.2 gi|389849071|ref|YP_006351307.1| - 4.3e-07 30.0 0.0 4.4e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389849071|ref|YP_006351307.1| - 0.0018 17.8 0.0 0.002 17.7 0.0 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|389849071|ref|YP_006351307.1| - 0.011 15.6 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.2 gi|389849071|ref|YP_006351307.1| - 0.086 12.6 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase family PAS_9 PF13426.1 gi|389849072|ref|YP_006351308.1| - 2.8e-39 133.6 0.0 2.4e-23 82.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|389849072|ref|YP_006351308.1| - 6.2e-27 93.6 0.0 3.3e-14 52.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|389849072|ref|YP_006351308.1| - 7.4e-27 93.5 1.2 2.1e-12 47.0 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|389849072|ref|YP_006351308.1| - 8e-27 93.1 0.0 7.5e-15 54.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|389849072|ref|YP_006351308.1| - 4.8e-15 55.2 0.0 2.1e-14 53.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|389849072|ref|YP_006351308.1| - 2e-12 47.3 0.0 5.9e-12 45.8 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|389849072|ref|YP_006351308.1| - 1.6e-07 31.1 0.2 4.3e-07 29.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|389849072|ref|YP_006351308.1| - 2.4e-07 30.3 0.0 0.0099 15.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|389849072|ref|YP_006351308.1| - 6.8e-07 29.5 0.0 3.2e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|389849072|ref|YP_006351308.1| - 2.1e-06 28.2 0.1 1.7e-05 25.3 0.0 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|389849072|ref|YP_006351308.1| - 4.5e-06 26.3 0.0 9.4e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389849072|ref|YP_006351308.1| - 0.00011 22.1 1.5 0.00011 22.1 1.1 2.6 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|389849072|ref|YP_006351308.1| - 0.083 12.4 0.1 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Hydantoinase_B PF02538.9 gi|389849073|ref|YP_006351309.1| - 9.8e-165 548.7 0.0 1.2e-164 548.4 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|389849074|ref|YP_006351310.1| - 1.9e-85 286.4 14.8 2.8e-84 282.6 6.3 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|389849074|ref|YP_006351310.1| - 7e-51 172.2 0.6 7e-51 172.2 0.4 2.5 2 1 1 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|389849074|ref|YP_006351310.1| - 0.0028 16.9 3.4 0.0055 16.0 0.1 2.7 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|389849074|ref|YP_006351310.1| - 0.0045 15.3 6.6 0.022 13.0 0.7 2.2 2 0 0 2 2 2 2 MutL protein EutA PF06277.6 gi|389849074|ref|YP_006351310.1| - 0.0067 15.0 0.8 0.013 14.1 0.5 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA Nramp PF01566.13 gi|389849075|ref|YP_006351311.1| - 1.1e-96 323.7 24.4 1.4e-96 323.4 16.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF996 PF06195.8 gi|389849075|ref|YP_006351311.1| - 4.2 7.3 19.2 2.8 7.9 1.2 4.0 4 1 0 4 4 4 0 Protein of unknown function (DUF996) RHH_1 PF01402.16 gi|389849078|ref|YP_006351314.1| - 4.9e-07 29.3 0.0 1.1e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|389849078|ref|YP_006351314.1| - 0.0004 20.0 0.1 0.00071 19.2 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain TFIID_90kDa PF04494.10 gi|389849078|ref|YP_006351314.1| - 0.034 14.2 0.0 0.048 13.7 0.0 1.2 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit PUB PF09409.5 gi|389849078|ref|YP_006351314.1| - 0.079 12.7 0.0 0.23 11.2 0.0 1.7 2 0 0 2 2 2 0 PUB domain DUF1849 PF08904.6 gi|389849079|ref|YP_006351315.1| - 0.19 11.0 5.6 0.1 11.9 2.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1849) Herpes_LMP1 PF05297.6 gi|389849079|ref|YP_006351315.1| - 3 6.6 9.2 3.9 6.3 6.4 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) HHH_2 PF12826.2 gi|389849080|ref|YP_006351316.1| - 0.00068 19.4 0.1 0.0017 18.1 0.0 1.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2543 PF10820.3 gi|389849080|ref|YP_006351316.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2543) HHH_5 PF14520.1 gi|389849080|ref|YP_006351316.1| - 0.029 14.5 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain alpha-hel2 PF14456.1 gi|389849080|ref|YP_006351316.1| - 0.045 12.5 0.1 0.08 11.7 0.1 1.4 1 0 0 1 1 1 0 Alpha-helical domain 2 Rhamno_transf PF11316.3 gi|389849081|ref|YP_006351317.1| - 0.049 12.8 0.1 0.049 12.8 0.1 1.1 1 0 0 1 1 1 0 Putative rhamnosyl transferase GFO_IDH_MocA PF01408.17 gi|389849083|ref|YP_006351319.1| - 3.9e-28 98.3 0.2 1e-27 97.0 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|389849083|ref|YP_006351319.1| - 1.3e-09 37.8 0.0 3.1e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|389849083|ref|YP_006351319.1| - 0.0009 19.5 0.2 0.0018 18.6 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|389849083|ref|YP_006351319.1| - 0.0043 17.0 0.0 0.0063 16.4 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|389849083|ref|YP_006351319.1| - 0.011 16.2 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain F420_oxidored PF03807.12 gi|389849083|ref|YP_006351319.1| - 0.011 16.0 0.0 0.026 14.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CoA_binding_2 PF13380.1 gi|389849083|ref|YP_006351319.1| - 0.03 14.4 0.8 0.056 13.6 0.1 1.7 2 0 0 2 2 2 0 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|389849083|ref|YP_006351319.1| - 0.11 11.6 0.0 0.3 10.2 0.0 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|389849083|ref|YP_006351319.1| - 0.12 12.2 1.1 4.1 7.3 0.8 2.4 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF362 PF04015.7 gi|389849084|ref|YP_006351320.1| - 7.4e-11 41.9 0.5 8.7e-10 38.4 0.4 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Peripla_BP_3 PF13377.1 gi|389849084|ref|YP_006351320.1| - 0.058 13.3 0.0 1.4 8.9 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein-like domain Epimerase PF01370.16 gi|389849085|ref|YP_006351321.1| - 1.8e-34 119.2 0.0 2.5e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389849085|ref|YP_006351321.1| - 7.8e-27 93.6 0.0 1.3e-26 92.9 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|389849085|ref|YP_006351321.1| - 1.2e-18 67.7 0.5 1.8e-18 67.1 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|389849085|ref|YP_006351321.1| - 3.4e-16 58.9 0.4 8.8e-11 41.1 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|389849085|ref|YP_006351321.1| - 2.1e-13 49.8 0.0 4.3e-13 48.8 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|389849085|ref|YP_006351321.1| - 5.4e-11 42.6 1.4 9.5e-11 41.8 1.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|389849085|ref|YP_006351321.1| - 1.3e-08 34.1 0.1 7.3e-08 31.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|389849085|ref|YP_006351321.1| - 0.00012 21.4 0.0 0.00017 20.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|389849085|ref|YP_006351321.1| - 0.0016 18.1 1.0 0.0066 16.1 0.7 2.0 1 1 0 1 1 1 1 KR domain CoA_binding_2 PF13380.1 gi|389849085|ref|YP_006351321.1| - 0.046 13.8 0.1 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain ATPgrasp_Ter PF15632.1 gi|389849086|ref|YP_006351322.1| - 6.4e-23 81.0 0.0 1.2e-22 80.1 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|389849086|ref|YP_006351322.1| - 1.2e-17 64.2 0.0 1.9e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|389849086|ref|YP_006351322.1| - 7.4e-06 25.9 0.0 1.7e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|389849086|ref|YP_006351322.1| - 0.00076 18.8 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Beta_helix PF13229.1 gi|389849087|ref|YP_006351323.1| - 0.0019 17.9 10.9 0.13 12.0 0.7 2.8 1 1 1 2 2 2 2 Right handed beta helix region Glycos_transf_2 PF00535.21 gi|389849089|ref|YP_006351325.1| - 1.9e-21 76.5 0.0 5.3e-21 75.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389849089|ref|YP_006351325.1| - 6.6e-06 26.0 1.0 2.2e-05 24.3 0.7 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|389849089|ref|YP_006351325.1| - 2.7e-05 24.4 0.0 5.3e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF308 PF03729.8 gi|389849089|ref|YP_006351325.1| - 0.0027 17.6 2.7 0.007 16.3 0.6 2.1 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) DUF1616 PF07760.6 gi|389849090|ref|YP_006351326.1| - 2.3e-62 210.7 0.6 2.8e-62 210.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Transp_cyt_pur PF02133.10 gi|389849090|ref|YP_006351326.1| - 0.00046 18.8 1.0 0.00077 18.1 0.7 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin TAT_signal PF10518.4 gi|389849091|ref|YP_006351327.1| - 0.051 13.6 2.5 0.085 12.9 0.7 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PEGA PF08308.6 gi|389849091|ref|YP_006351327.1| - 1.1 9.0 6.2 4.2 7.2 0.1 4.3 5 0 0 5 5 5 0 PEGA domain Polysacc_synt PF01943.12 gi|389849092|ref|YP_006351328.1| - 2.4e-33 115.5 9.8 2.4e-33 115.5 6.8 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|389849092|ref|YP_006351328.1| - 3.2e-21 75.9 42.1 1.8e-20 73.5 10.0 2.2 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|389849092|ref|YP_006351328.1| - 2.3e-12 46.9 11.7 2.3e-12 46.9 8.1 4.0 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Asn_synthase PF00733.16 gi|389849094|ref|YP_006351330.1| - 9.9e-11 41.6 0.1 2.1e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 Asparagine synthase GATase_7 PF13537.1 gi|389849094|ref|YP_006351330.1| - 0.00017 21.2 0.0 0.0009 18.9 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain NfeD PF01957.13 gi|389849095|ref|YP_006351331.1| - 0.062 13.4 1.8 3.3 7.8 1.1 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding HTH_20 PF12840.2 gi|389849096|ref|YP_006351332.1| - 3.9e-11 42.5 0.0 6.5e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389849096|ref|YP_006351332.1| - 4e-07 29.5 0.0 6.5e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389849096|ref|YP_006351332.1| - 3.4e-06 26.3 0.0 7.9e-06 25.1 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389849096|ref|YP_006351332.1| - 6.1e-06 25.8 0.0 8.9e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389849096|ref|YP_006351332.1| - 2.7e-05 23.7 0.1 4e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|389849096|ref|YP_006351332.1| - 0.00011 21.7 0.0 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|389849096|ref|YP_006351332.1| - 0.00014 21.2 0.0 0.00039 19.8 0.0 1.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain FUR PF01475.14 gi|389849096|ref|YP_006351332.1| - 0.00065 19.6 0.1 0.00083 19.2 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.15 gi|389849096|ref|YP_006351332.1| - 0.0016 18.0 0.0 0.0039 16.8 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|389849096|ref|YP_006351332.1| - 0.0021 17.7 0.1 0.0035 17.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|389849096|ref|YP_006351332.1| - 0.003 17.2 0.0 0.0063 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family TetR_N PF00440.18 gi|389849096|ref|YP_006351332.1| - 0.0072 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_27 PF13463.1 gi|389849096|ref|YP_006351332.1| - 0.0077 16.5 0.0 0.012 15.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1492 PF07374.6 gi|389849096|ref|YP_006351332.1| - 0.0081 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) B-block_TFIIIC PF04182.7 gi|389849096|ref|YP_006351332.1| - 0.0094 15.7 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|389849096|ref|YP_006351332.1| - 0.016 15.0 0.2 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|389849096|ref|YP_006351332.1| - 0.064 13.3 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|389849096|ref|YP_006351332.1| - 0.089 13.0 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_28 PF13518.1 gi|389849096|ref|YP_006351332.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|389849096|ref|YP_006351332.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ArsR PF09824.4 gi|389849096|ref|YP_006351332.1| - 0.13 11.6 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF1828 PF08861.5 gi|389849096|ref|YP_006351332.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF1828 HTH_Crp_2 PF13545.1 gi|389849096|ref|YP_006351332.1| - 0.15 11.8 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Glycos_transf_1 PF00534.15 gi|389849098|ref|YP_006351334.1| - 1.3e-25 89.8 0.0 2.1e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|389849098|ref|YP_006351334.1| - 4.7e-18 65.6 0.0 1.3e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389849098|ref|YP_006351334.1| - 9.8e-13 48.5 6.2 2.5e-12 47.2 2.6 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|389849098|ref|YP_006351334.1| - 1.1e-11 44.7 0.0 3.9e-11 43.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|389849098|ref|YP_006351334.1| - 1.1e-09 38.2 1.3 2.2e-09 37.2 0.9 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|389849098|ref|YP_006351334.1| - 0.0009 19.0 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|389849098|ref|YP_006351334.1| - 0.00094 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain DUF354 PF04007.7 gi|389849099|ref|YP_006351335.1| - 2e-06 26.9 0.0 3e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_2 PF13524.1 gi|389849099|ref|YP_006351335.1| - 0.0046 17.1 0.1 0.027 14.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF457 PF04307.9 gi|389849100|ref|YP_006351336.1| - 5.4e-13 48.5 8.4 7e-13 48.2 5.8 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Hexapep PF00132.19 gi|389849101|ref|YP_006351337.1| - 9.5e-28 94.4 18.6 2.1e-09 36.4 0.6 5.1 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389849101|ref|YP_006351337.1| - 6e-19 67.2 13.4 1.1e-06 28.0 0.2 5.4 5 1 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.12 gi|389849102|ref|YP_006351338.1| - 6e-116 387.4 0.2 6.7e-116 387.2 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|389849102|ref|YP_006351338.1| - 1.2e-09 37.4 0.0 8.6e-07 28.0 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|389849102|ref|YP_006351338.1| - 4.6e-08 32.5 0.1 7.8e-08 31.8 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|389849102|ref|YP_006351338.1| - 6.6e-06 25.3 0.0 1.1e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|389849102|ref|YP_006351338.1| - 0.007 14.6 0.0 0.019 13.2 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.17 gi|389849103|ref|YP_006351339.1| - 3.4e-21 75.9 0.5 6.5e-21 75.0 0.1 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|389849103|ref|YP_006351339.1| - 8e-06 25.6 0.0 1.9e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|389849103|ref|YP_006351339.1| - 7.1e-05 21.9 0.6 0.00016 20.8 0.3 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|389849103|ref|YP_006351339.1| - 0.00022 21.6 0.3 0.047 14.0 0.2 2.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|389849103|ref|YP_006351339.1| - 0.00035 20.9 0.1 0.0067 16.8 0.0 2.6 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|389849103|ref|YP_006351339.1| - 0.0043 17.1 0.1 0.12 12.4 0.0 2.5 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|389849103|ref|YP_006351339.1| - 0.0056 16.9 0.3 0.039 14.2 0.1 2.4 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|389849103|ref|YP_006351339.1| - 0.0062 17.0 0.8 0.02 15.3 0.1 2.1 2 0 0 2 2 2 1 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|389849103|ref|YP_006351339.1| - 0.0093 15.1 0.0 0.048 12.8 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|389849103|ref|YP_006351339.1| - 0.02 14.9 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IlvN PF07991.7 gi|389849103|ref|YP_006351339.1| - 0.041 13.2 0.1 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|389849104|ref|YP_006351340.1| - 6.2e-42 143.0 0.1 9.6e-42 142.4 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|389849104|ref|YP_006351340.1| - 4.6e-21 74.8 0.0 8e-21 74.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|389849104|ref|YP_006351340.1| - 6.6e-16 58.3 0.0 1.5e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|389849104|ref|YP_006351340.1| - 7.3e-06 25.7 0.0 1.9e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|389849104|ref|YP_006351340.1| - 3e-05 23.2 0.0 0.027 13.6 0.0 3.2 3 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|389849104|ref|YP_006351340.1| - 3.5e-05 23.6 0.0 0.0003 20.6 0.0 2.2 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|389849104|ref|YP_006351340.1| - 0.0011 18.6 0.2 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|389849104|ref|YP_006351340.1| - 0.011 16.2 0.0 0.035 14.6 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|389849104|ref|YP_006351340.1| - 0.016 15.2 2.9 0.048 13.6 0.1 3.1 3 1 0 3 3 3 0 TrkA-N domain CoA_binding_2 PF13380.1 gi|389849104|ref|YP_006351340.1| - 0.025 14.7 0.0 0.095 12.8 0.0 2.0 1 0 0 1 1 1 0 CoA binding domain Epimerase_2 PF02350.14 gi|389849105|ref|YP_006351341.1| - 6.1e-104 347.5 0.0 7e-104 347.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|389849105|ref|YP_006351341.1| - 0.00084 19.5 0.1 0.0022 18.1 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Metallophos_3 PF14582.1 gi|389849105|ref|YP_006351341.1| - 0.034 13.3 0.1 0.23 10.5 0.0 2.2 3 0 0 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Prenyltrans_2 PF13249.1 gi|389849108|ref|YP_006351344.1| - 5.4e-06 26.7 0.0 0.079 13.3 0.0 2.8 2 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|389849108|ref|YP_006351344.1| - 0.00022 21.1 0.3 0.0017 18.3 0.1 2.3 1 1 1 2 2 2 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|389849108|ref|YP_006351344.1| - 0.007 15.9 0.7 0.027 14.0 0.0 2.4 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat TPR_16 PF13432.1 gi|389849108|ref|YP_006351344.1| - 0.19 12.4 0.1 0.19 12.4 0.1 2.3 3 0 0 3 3 3 0 Tetratricopeptide repeat Acetyltransf_6 PF13480.1 gi|389849109|ref|YP_006351345.1| - 1.5e-19 70.3 0.0 2.7e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|389849109|ref|YP_006351345.1| - 5.6e-11 41.7 0.0 8.7e-06 24.6 0.0 2.9 3 0 0 3 3 3 2 FemAB family Acetyltransf_6 PF13480.1 gi|389849110|ref|YP_006351346.1| - 8.7e-21 74.3 0.1 1.3e-19 70.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|389849110|ref|YP_006351346.1| - 1.4e-06 27.3 0.0 0.0021 16.8 0.0 2.5 3 0 0 3 3 3 2 FemAB family Poly_export PF02563.11 gi|389849110|ref|YP_006351346.1| - 0.13 11.9 0.0 5 6.9 0.0 2.5 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein HTH_20 PF12840.2 gi|389849111|ref|YP_006351347.1| - 4.4e-05 23.2 0.1 5.5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|389849111|ref|YP_006351347.1| - 0.0039 16.9 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|389849111|ref|YP_006351347.1| - 0.0065 16.1 0.1 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389849111|ref|YP_006351347.1| - 0.0065 16.1 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|389849111|ref|YP_006351347.1| - 0.023 15.0 0.1 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389849111|ref|YP_006351347.1| - 0.034 13.9 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|389849111|ref|YP_006351347.1| - 0.056 13.1 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|389849111|ref|YP_006351347.1| - 0.065 12.9 0.4 0.096 12.3 0.3 1.2 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|389849111|ref|YP_006351347.1| - 0.075 13.1 0.1 0.097 12.8 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|389849111|ref|YP_006351347.1| - 0.14 11.7 0.2 0.21 11.2 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain SurE PF01975.12 gi|389849112|ref|YP_006351348.1| - 4.6e-46 156.6 0.0 5.9e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE CBS PF00571.23 gi|389849113|ref|YP_006351349.1| - 2.2e-31 107.3 4.0 4.1e-15 55.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF1670 PF07900.6 gi|389849113|ref|YP_006351349.1| - 0.034 13.3 0.5 3.7 6.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1670) Orthopox_F6 PF06601.7 gi|389849113|ref|YP_006351349.1| - 0.044 13.7 0.6 0.089 12.7 0.0 1.7 2 0 0 2 2 2 0 Orthopoxvirus F6 protein PMSR PF01625.16 gi|389849115|ref|YP_006351351.1| - 3.7e-67 225.0 1.6 4.4e-67 224.8 1.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.1 gi|389849115|ref|YP_006351351.1| - 0.15 11.9 1.3 0.26 11.1 0.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) CbiA PF01656.18 gi|389849117|ref|YP_006351353.1| - 1.1e-27 96.7 0.0 1.3e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389849117|ref|YP_006351353.1| - 7.5e-09 35.7 0.0 3.6e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|389849117|ref|YP_006351353.1| - 4.3e-06 26.0 0.4 0.00021 20.4 0.1 2.3 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|389849117|ref|YP_006351353.1| - 3.3e-05 23.0 0.2 0.0007 18.7 0.1 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|389849117|ref|YP_006351353.1| - 0.0014 19.4 0.7 0.0029 18.4 0.2 1.9 1 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|389849117|ref|YP_006351353.1| - 0.0099 15.0 0.0 0.03 13.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|389849117|ref|YP_006351353.1| - 0.017 14.4 0.1 0.033 13.5 0.1 1.7 1 1 0 1 1 1 0 YhjQ protein AAA_18 PF13238.1 gi|389849117|ref|YP_006351353.1| - 0.028 14.7 0.0 0.077 13.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|389849117|ref|YP_006351353.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein Raftlin PF15250.1 gi|389849119|ref|YP_006351355.1| - 0.39 9.1 8.9 0.47 8.9 6.2 1.1 1 0 0 1 1 1 0 Raftlin AvrE PF11725.3 gi|389849119|ref|YP_006351355.1| - 2.8 4.8 11.6 3.5 4.5 8.0 1.0 1 0 0 1 1 1 0 Pathogenicity factor DUF789 PF05623.7 gi|389849119|ref|YP_006351355.1| - 7.3 5.9 8.3 17 4.7 5.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF789) OrfB_Zn_ribbon PF07282.6 gi|389849120|ref|YP_006351356.1| - 3.7e-23 80.9 1.4 4.7e-23 80.6 1.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|389849120|ref|YP_006351356.1| - 0.0047 16.7 0.7 0.0068 16.2 0.5 1.3 1 0 0 1 1 1 1 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.7 gi|389849120|ref|YP_006351356.1| - 0.025 13.9 5.4 0.052 12.8 3.5 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|389849120|ref|YP_006351356.1| - 0.036 14.0 1.1 9.5 6.2 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|389849120|ref|YP_006351356.1| - 0.039 13.4 2.7 0.072 12.5 1.9 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|389849120|ref|YP_006351356.1| - 0.051 13.3 2.6 0.095 12.5 1.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon Prim_Zn_Ribbon PF08273.7 gi|389849120|ref|YP_006351356.1| - 0.062 13.3 3.3 0.13 12.3 2.3 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|389849120|ref|YP_006351356.1| - 0.094 12.5 4.6 0.15 11.8 3.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389849120|ref|YP_006351356.1| - 0.099 11.8 2.8 5.2 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain C1_2 PF03107.11 gi|389849120|ref|YP_006351356.1| - 0.13 12.3 3.1 0.24 11.5 2.2 1.4 1 0 0 1 1 1 0 C1 domain C1_3 PF07649.7 gi|389849120|ref|YP_006351356.1| - 1.4 8.9 6.6 3.4 7.7 4.6 1.6 1 1 0 1 1 1 0 C1-like domain OrfB_IS605 PF01385.14 gi|389849121|ref|YP_006351357.1| - 3.6e-09 36.3 0.0 4.1e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Flagellin_D3 PF08884.6 gi|389849121|ref|YP_006351357.1| - 0.03 14.4 0.3 0.034 14.3 0.2 1.2 1 0 0 1 1 1 0 Flagellin D3 domain Cdc6_C PF09079.6 gi|389849123|ref|YP_006351359.1| - 4.2e-19 68.0 0.0 1.5e-18 66.3 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|389849123|ref|YP_006351359.1| - 3.8e-12 46.4 0.0 8.2e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389849123|ref|YP_006351359.1| - 2.1e-11 44.1 0.1 3.2e-10 40.2 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|389849123|ref|YP_006351359.1| - 4.2e-05 23.7 0.0 0.00016 21.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|389849123|ref|YP_006351359.1| - 0.00025 20.0 0.0 0.00057 18.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|389849123|ref|YP_006351359.1| - 0.00045 19.1 0.0 0.00064 18.6 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|389849123|ref|YP_006351359.1| - 0.00063 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|389849123|ref|YP_006351359.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|389849123|ref|YP_006351359.1| - 0.019 14.7 0.5 0.33 10.6 0.1 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|389849123|ref|YP_006351359.1| - 0.039 14.2 0.0 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|389849123|ref|YP_006351359.1| - 0.054 12.4 0.0 0.085 11.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|389849123|ref|YP_006351359.1| - 0.056 12.9 0.2 1.7 8.1 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase PIF1 PF05970.9 gi|389849123|ref|YP_006351359.1| - 0.1 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Zeta_toxin PF06414.7 gi|389849123|ref|YP_006351359.1| - 0.1 11.6 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|389849123|ref|YP_006351359.1| - 0.1 12.7 0.1 0.25 11.5 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_32 PF13654.1 gi|389849123|ref|YP_006351359.1| - 0.11 11.1 0.0 1.3 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|389849123|ref|YP_006351359.1| - 0.13 13.1 3.4 0.18 12.5 1.0 2.6 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|389849123|ref|YP_006351359.1| - 0.17 10.8 0.1 5.4 5.9 0.0 2.1 1 1 0 2 2 2 0 KAP family P-loop domain DUF4392 PF14336.1 gi|389849124|ref|YP_006351360.1| - 0.072 11.8 0.0 0.099 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) Na_K-ATPase PF00287.13 gi|389849125|ref|YP_006351361.1| - 0.024 13.4 0.0 0.028 13.2 0.0 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain ADH_zinc_N PF00107.21 gi|389849127|ref|YP_006351363.1| - 4e-23 81.3 0.1 6e-23 80.8 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389849127|ref|YP_006351363.1| - 6.2e-23 80.6 0.3 1e-22 79.9 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|389849127|ref|YP_006351363.1| - 2.1e-15 57.7 0.3 4.7e-15 56.5 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|389849127|ref|YP_006351363.1| - 3.8 6.7 5.9 12 5.0 4.1 1.9 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region eIF-1a PF01176.14 gi|389849128|ref|YP_006351364.1| - 8.5e-24 82.7 0.2 9.8e-24 82.5 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2757 PF10955.3 gi|389849128|ref|YP_006351364.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) ADH_N PF08240.7 gi|389849129|ref|YP_006351365.1| - 1.5e-31 108.3 0.1 2.8e-31 107.5 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|389849129|ref|YP_006351365.1| - 2.8e-29 101.2 1.0 4.6e-29 100.6 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|389849129|ref|YP_006351365.1| - 0.0001 23.1 0.5 0.0002 22.2 0.4 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.11 gi|389849129|ref|YP_006351365.1| - 0.0089 16.4 2.2 0.017 15.4 1.5 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389849129|ref|YP_006351365.1| - 0.013 15.4 1.3 0.022 14.7 0.9 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|389849129|ref|YP_006351365.1| - 0.054 12.6 0.1 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|389849129|ref|YP_006351365.1| - 0.15 12.0 1.1 3.7 7.4 0.1 2.6 2 1 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain tRNA_edit PF04073.10 gi|389849130|ref|YP_006351366.1| - 6.5e-29 100.2 0.2 7.9e-29 100.0 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain DUF1628 PF07790.6 gi|389849131|ref|YP_006351367.1| - 8.8e-25 87.2 2.6 8.8e-25 87.2 1.8 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) Abhydrolase_8 PF06259.7 gi|389849131|ref|YP_006351367.1| - 0.00068 19.1 0.6 0.00096 18.6 0.4 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase DUF1628 PF07790.6 gi|389849132|ref|YP_006351368.1| - 0.047 14.4 0.9 0.12 13.1 0.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) D-aminoacyl_C PF07908.7 gi|389849132|ref|YP_006351368.1| - 0.072 12.4 0.8 0.24 10.7 0.6 1.9 1 0 0 1 1 1 0 D-aminoacylase, C-terminal region YSIRK_signal PF04650.12 gi|389849133|ref|YP_006351369.1| - 0.55 9.8 4.2 0.95 9.0 2.9 1.4 1 0 0 1 1 1 0 YSIRK type signal peptide DUF2190 PF09956.4 gi|389849135|ref|YP_006351371.1| - 0.079 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) T2SF PF00482.18 gi|389849138|ref|YP_006351374.1| - 3.7e-24 85.0 6.4 8e-13 48.3 1.5 3.8 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|389849138|ref|YP_006351374.1| - 3.2 6.2 6.3 2.4 6.6 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) Ribosomal_60s PF00428.14 gi|389849139|ref|YP_006351375.1| - 3e-08 33.9 11.6 5.3e-08 33.1 8.0 1.4 1 0 0 1 1 1 1 60s Acidic ribosomal protein T2SE PF00437.15 gi|389849140|ref|YP_006351376.1| - 6.2e-47 159.7 0.0 1.1e-46 158.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|389849140|ref|YP_006351376.1| - 8.6e-05 21.9 0.1 0.00018 20.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|389849141|ref|YP_006351377.1| - 8.1e-08 31.6 0.0 2.2e-05 23.7 0.0 2.2 1 1 0 1 1 1 1 KaiC DUF1628 PF07790.6 gi|389849142|ref|YP_006351378.1| - 1.4e-18 67.4 1.6 2.5e-18 66.6 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Bactofilin PF04519.8 gi|389849143|ref|YP_006351379.1| - 0.085 12.8 1.5 0.2 11.6 0.1 2.4 3 0 0 3 3 3 0 Polymer-forming cytoskeletal Glyoxalase_2 PF12681.2 gi|389849145|ref|YP_006351381.1| - 5.4e-19 68.8 0.1 7.4e-19 68.3 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389849145|ref|YP_006351381.1| - 1.2e-15 57.6 0.1 1.8e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389849145|ref|YP_006351381.1| - 6.7e-15 55.0 0.0 1.1e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|389849145|ref|YP_006351381.1| - 0.00019 21.3 0.0 0.00055 19.8 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain PAS_9 PF13426.1 gi|389849146|ref|YP_006351382.1| - 1.9e-38 131.0 0.1 2.2e-17 63.3 0.0 3.2 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|389849146|ref|YP_006351382.1| - 1.8e-34 117.9 0.0 3.4e-18 65.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|389849146|ref|YP_006351382.1| - 1.5e-27 95.7 0.1 4.1e-16 58.9 0.2 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|389849146|ref|YP_006351382.1| - 1.4e-16 59.7 0.0 1.3e-08 34.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|389849146|ref|YP_006351382.1| - 1.1e-15 57.4 0.1 8.3e-07 29.0 0.0 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|389849146|ref|YP_006351382.1| - 1.8e-15 56.5 0.1 3.9e-15 55.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|389849146|ref|YP_006351382.1| - 4.7e-09 36.1 0.1 9.8e-09 35.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|389849146|ref|YP_006351382.1| - 3.7e-06 27.1 0.0 0.0013 19.0 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|389849146|ref|YP_006351382.1| - 0.00017 21.2 0.0 0.00036 20.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389849146|ref|YP_006351382.1| - 0.0022 17.9 0.7 0.025 14.5 0.8 2.6 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF4345 PF14248.1 gi|389849146|ref|YP_006351382.1| - 0.0049 16.3 1.1 0.0084 15.5 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) SPOB_a PF14689.1 gi|389849146|ref|YP_006351382.1| - 0.099 12.2 0.0 0.3 10.6 0.0 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Iron_transport PF10634.4 gi|389849147|ref|YP_006351383.1| - 6e-05 22.9 0.0 0.0067 16.3 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein zf-C2H2 PF00096.21 gi|389849148|ref|YP_006351384.1| - 0.075 13.4 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.1 gi|389849148|ref|YP_006351384.1| - 0.16 11.7 0.8 0.26 11.0 0.6 1.3 1 0 0 1 1 1 0 Nudix N-terminal Ndc1_Nup PF09531.5 gi|389849149|ref|YP_006351385.1| - 6.6 5.0 8.5 20 3.4 0.0 2.2 2 0 0 2 2 2 0 Nucleoporin protein Ndc1-Nup E1-E2_ATPase PF00122.15 gi|389849150|ref|YP_006351386.1| - 3.9e-58 196.2 0.1 7.8e-58 195.2 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|389849150|ref|YP_006351386.1| - 3.2e-46 158.4 2.0 3.2e-46 158.4 1.4 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|389849150|ref|YP_006351386.1| - 4.1e-27 94.0 0.1 2.7e-12 46.6 0.0 3.4 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|389849150|ref|YP_006351386.1| - 1.6e-14 54.4 0.0 6.1e-14 52.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|389849150|ref|YP_006351386.1| - 0.0013 18.3 0.6 0.018 14.6 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HIPIP PF01355.12 gi|389849151|ref|YP_006351387.1| - 1.8e-10 40.7 0.3 2.6e-10 40.2 0.2 1.3 1 0 0 1 1 1 1 High potential iron-sulfur protein Myco_19_kDa PF05481.7 gi|389849151|ref|YP_006351387.1| - 0.016 15.0 2.8 0.023 14.5 1.9 1.3 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen UCR_Fe-S_N PF10399.4 gi|389849151|ref|YP_006351387.1| - 0.21 10.7 0.3 0.21 10.7 0.2 2.3 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal eIF-1a PF01176.14 gi|389849152|ref|YP_006351388.1| - 0.11 11.9 2.5 3.1 7.2 0.1 3.3 3 1 1 4 4 4 0 Translation initiation factor 1A / IF-1 Pyr_redox_2 PF07992.9 gi|389849154|ref|YP_006351390.1| - 1.2e-31 110.1 0.8 1.9e-14 54.0 0.0 3.3 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389849154|ref|YP_006351390.1| - 6.3e-23 80.9 1.1 1.6e-17 63.6 0.1 3.6 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|389849154|ref|YP_006351390.1| - 5.4e-12 45.7 0.0 2.6e-11 43.5 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|389849154|ref|YP_006351390.1| - 3.2e-09 36.1 3.3 0.11 11.3 0.0 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|389849154|ref|YP_006351390.1| - 1.6e-06 27.9 1.1 0.041 13.8 0.1 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|389849154|ref|YP_006351390.1| - 0.00022 21.3 0.0 0.0081 16.2 0.0 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389849154|ref|YP_006351390.1| - 0.00025 19.6 0.1 0.58 8.5 0.0 3.5 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.13 gi|389849154|ref|YP_006351390.1| - 0.0011 18.7 0.1 0.0021 17.7 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|389849154|ref|YP_006351390.1| - 0.0051 17.0 0.2 1 9.6 0.0 2.8 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|389849154|ref|YP_006351390.1| - 0.061 12.3 5.4 2.2 7.2 0.1 2.9 2 1 0 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.1 gi|389849154|ref|YP_006351390.1| - 0.061 13.0 0.6 1.2 8.9 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|389849154|ref|YP_006351390.1| - 0.15 10.9 0.2 9.8 4.9 0.0 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein EamA PF00892.15 gi|389849155|ref|YP_006351391.1| - 4.1e-34 117.3 26.4 3e-17 62.8 5.0 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389849155|ref|YP_006351391.1| - 5.6e-10 39.4 33.6 5.7e-10 39.3 3.5 3.5 2 1 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|389849155|ref|YP_006351391.1| - 0.00023 20.8 18.2 0.037 13.6 1.9 2.6 2 2 0 2 2 2 2 Triose-phosphate Transporter family TroA PF01297.12 gi|389849157|ref|YP_006351393.1| - 4.8e-51 173.4 17.7 7.9e-51 172.7 12.2 1.3 1 1 0 1 1 1 1 Periplasmic solute binding protein family SAPS PF04499.10 gi|389849157|ref|YP_006351393.1| - 0.28 9.7 4.3 0.33 9.5 3.0 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CDC45 PF02724.9 gi|389849157|ref|YP_006351393.1| - 1.2 7.0 13.5 1.6 6.7 9.3 1.1 1 0 0 1 1 1 0 CDC45-like protein Macoilin PF09726.4 gi|389849157|ref|YP_006351393.1| - 1.7 6.7 5.1 2.1 6.5 3.6 1.1 1 0 0 1 1 1 0 Transmembrane protein NPR3 PF03666.8 gi|389849157|ref|YP_006351393.1| - 5.5 5.4 7.1 7.3 5.0 4.9 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 ABC_tran PF00005.22 gi|389849158|ref|YP_006351394.1| - 7.1e-31 107.3 0.0 1e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389849158|ref|YP_006351394.1| - 1.3e-10 41.7 0.0 6.7e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389849158|ref|YP_006351394.1| - 5.2e-06 25.8 0.3 9.4e-05 21.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|389849158|ref|YP_006351394.1| - 0.0002 21.2 1.3 0.0068 16.3 0.7 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|389849158|ref|YP_006351394.1| - 0.00031 20.1 0.0 0.0006 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|389849158|ref|YP_006351394.1| - 0.005 16.7 0.1 0.18 11.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|389849158|ref|YP_006351394.1| - 0.0053 16.1 0.1 1.3 8.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|389849158|ref|YP_006351394.1| - 0.011 15.7 3.2 0.059 13.3 2.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|389849158|ref|YP_006351394.1| - 0.015 14.7 0.2 0.071 12.5 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|389849158|ref|YP_006351394.1| - 0.017 14.5 1.9 0.098 12.0 1.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|389849158|ref|YP_006351394.1| - 0.022 15.1 0.1 0.033 14.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|389849158|ref|YP_006351394.1| - 0.025 14.7 0.5 0.26 11.4 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|389849158|ref|YP_006351394.1| - 0.037 14.8 1.2 0.18 12.6 0.8 2.3 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|389849158|ref|YP_006351394.1| - 0.076 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SUA5 PF03481.8 gi|389849158|ref|YP_006351394.1| - 0.1 12.7 0.1 5.9 6.9 0.0 2.2 1 1 0 1 1 1 0 Putative GTP-binding controlling metal-binding cobW PF02492.14 gi|389849158|ref|YP_006351394.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|389849158|ref|YP_006351394.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|389849158|ref|YP_006351394.1| - 0.16 10.9 0.0 6.4 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Selenoprotein_S PF06936.6 gi|389849159|ref|YP_006351395.1| - 8.3 5.9 8.3 0.25 10.8 1.0 1.9 1 1 0 2 2 2 0 Selenoprotein S (SelS) ABC-3 PF00950.12 gi|389849160|ref|YP_006351396.1| - 7.2e-57 192.6 34.4 9.4e-57 192.2 23.8 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|389849160|ref|YP_006351396.1| - 0.012 14.4 39.1 0.0043 15.9 25.3 1.6 1 1 0 1 1 1 0 FecCD transport family MCPsignal PF00015.16 gi|389849162|ref|YP_006351398.1| - 2.4e-49 167.7 52.2 1.1e-47 162.3 24.7 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Sec5 PF15469.1 gi|389849162|ref|YP_006351398.1| - 0.00017 21.3 5.0 0.00043 20.0 1.4 2.8 1 1 1 2 2 2 1 Exocyst complex component Sec5 Syntaxin_2 PF14523.1 gi|389849162|ref|YP_006351398.1| - 0.00049 20.0 2.0 2 8.4 0.3 3.8 2 2 1 3 3 3 1 Syntaxin-like protein Laminin_II PF06009.7 gi|389849162|ref|YP_006351398.1| - 0.017 14.8 34.5 0.12 12.0 2.5 4.4 2 2 2 4 4 4 0 Laminin Domain II Fib_alpha PF08702.5 gi|389849162|ref|YP_006351398.1| - 0.019 15.0 14.2 0.16 12.0 1.7 3.4 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Syntaxin PF00804.20 gi|389849162|ref|YP_006351398.1| - 0.03 14.4 20.9 0.71 10.0 1.7 4.0 2 2 2 4 4 4 0 Syntaxin DASH_Dad3 PF08656.5 gi|389849162|ref|YP_006351398.1| - 0.091 12.4 1.2 3 7.5 0.0 3.3 3 1 0 3 3 3 0 DASH complex subunit Dad3 Atg14 PF10186.4 gi|389849162|ref|YP_006351398.1| - 0.17 10.8 6.3 0.94 8.3 0.2 2.2 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|389849162|ref|YP_006351398.1| - 0.25 9.9 17.2 0.62 8.6 2.9 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF948 PF06103.6 gi|389849162|ref|YP_006351398.1| - 0.29 11.0 24.2 2.4 8.0 0.6 4.7 2 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|389849162|ref|YP_006351398.1| - 0.41 10.4 23.5 2.9 7.7 2.0 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Fzo_mitofusin PF04799.8 gi|389849162|ref|YP_006351398.1| - 0.43 9.9 9.6 1.3 8.3 0.2 3.5 2 2 1 3 3 3 0 fzo-like conserved region HisK_N PF09385.5 gi|389849162|ref|YP_006351398.1| - 0.68 9.5 3.3 0.85 9.2 0.3 2.3 2 1 0 2 2 2 0 Histidine kinase N terminal BLOC1_2 PF10046.4 gi|389849162|ref|YP_006351398.1| - 0.87 9.7 22.1 3.5 7.8 0.7 4.6 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.7 gi|389849162|ref|YP_006351398.1| - 0.97 9.1 20.4 0.39 10.4 3.2 3.0 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF3510 PF12022.3 gi|389849162|ref|YP_006351398.1| - 1.2 9.2 8.0 3.1 7.9 0.3 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF3510) CENP-S PF15630.1 gi|389849162|ref|YP_006351398.1| - 1.3 9.2 7.0 0.24 11.6 0.2 2.9 3 0 0 3 3 2 0 Kinetochore component CENP-S V_ATPase_I PF01496.14 gi|389849162|ref|YP_006351398.1| - 1.4 6.7 14.0 0.48 8.2 6.3 2.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.1 gi|389849162|ref|YP_006351398.1| - 1.6 7.0 19.6 0.41 9.0 8.6 2.1 1 1 1 2 2 2 0 AAA domain Dor1 PF04124.7 gi|389849162|ref|YP_006351398.1| - 3.2 6.1 10.6 1.4 7.3 4.6 2.1 1 1 1 2 2 2 0 Dor1-like family LXG PF04740.7 gi|389849162|ref|YP_006351398.1| - 3.5 7.3 20.7 2.9 7.6 2.2 3.9 1 1 2 3 3 3 0 LXG domain of WXG superfamily HisKA_3 PF07730.8 gi|389849162|ref|YP_006351398.1| - 3.5 8.0 16.7 9.2 6.7 0.2 5.3 3 2 2 5 5 5 0 Histidine kinase FH2 PF02181.18 gi|389849162|ref|YP_006351398.1| - 3.5 6.3 11.3 0.72 8.6 0.8 2.8 1 1 0 2 2 2 0 Formin Homology 2 Domain DUF1423 PF07227.6 gi|389849162|ref|YP_006351398.1| - 4.1 5.9 14.4 0.31 9.6 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1423) Hemerythrin PF01814.18 gi|389849162|ref|YP_006351398.1| - 4.1 7.5 6.7 49 4.0 0.5 3.6 2 2 1 3 3 3 0 Hemerythrin HHE cation binding domain LOH1CR12 PF10158.4 gi|389849162|ref|YP_006351398.1| - 4.4 7.1 11.3 1.3 8.7 1.1 3.2 2 2 0 3 3 3 0 Tumour suppressor protein COG2 PF06148.6 gi|389849162|ref|YP_006351398.1| - 4.5 7.1 22.5 4.5 7.1 0.7 4.2 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Rsd_AlgQ PF04353.8 gi|389849162|ref|YP_006351398.1| - 4.7 6.9 7.8 3.8 7.1 0.1 3.2 2 2 2 4 4 4 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ATG_C PF09333.6 gi|389849162|ref|YP_006351398.1| - 5.9 7.1 8.1 6.2 7.0 0.1 3.3 1 1 2 3 3 3 0 ATG C terminal domain Reo_sigmaC PF04582.7 gi|389849162|ref|YP_006351398.1| - 6.1 5.9 29.1 2.9 7.0 0.4 3.6 1 1 3 4 4 4 0 Reovirus sigma C capsid protein APG6 PF04111.7 gi|389849162|ref|YP_006351398.1| - 8.8 5.2 14.1 2.1 7.2 2.5 2.5 1 1 0 2 2 2 0 Autophagy protein Apg6 APG17 PF04108.7 gi|389849162|ref|YP_006351398.1| - 9.1 4.9 17.1 0.93 8.2 2.1 3.3 1 1 1 3 3 3 0 Autophagy protein Apg17 Prominin PF05478.6 gi|389849162|ref|YP_006351398.1| - 9.6 3.5 16.0 37 1.6 10.0 2.3 1 1 1 2 2 2 0 Prominin CheW PF01584.14 gi|389849163|ref|YP_006351399.1| - 1.7e-23 82.6 0.2 2e-23 82.3 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain Chlorosome_CsmC PF11098.3 gi|389849163|ref|YP_006351399.1| - 0.073 12.7 1.0 0.11 12.2 0.7 1.3 1 0 0 1 1 1 0 Chlorosome envelope protein C MFS_1 PF07690.11 gi|389849166|ref|YP_006351402.1| - 8.4e-20 70.7 47.7 1.1e-11 44.1 19.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily F420_oxidored PF03807.12 gi|389849168|ref|YP_006351404.1| - 3e-17 62.8 0.0 5.3e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.4 gi|389849168|ref|YP_006351404.1| - 0.00014 21.5 0.1 0.0017 18.0 0.0 2.1 1 1 0 2 2 2 1 Rossmann-like domain NAD_binding_2 PF03446.10 gi|389849168|ref|YP_006351404.1| - 0.0011 18.8 0.1 0.0047 16.7 0.0 1.8 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|389849168|ref|YP_006351404.1| - 0.0047 16.5 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|389849168|ref|YP_006351404.1| - 0.033 13.3 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|389849168|ref|YP_006351404.1| - 0.067 12.5 0.1 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.7 gi|389849168|ref|YP_006351404.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain PGM_PMM_I PF02878.11 gi|389849171|ref|YP_006351407.1| - 6.1e-30 103.5 0.0 1.1e-29 102.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|389849171|ref|YP_006351407.1| - 2e-18 66.4 0.0 3.9e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|389849171|ref|YP_006351407.1| - 5.4e-17 62.0 0.4 1.2e-16 60.9 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|389849171|ref|YP_006351407.1| - 1.9e-14 53.3 0.2 4.5e-14 52.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NosL PF05573.7 gi|389849172|ref|YP_006351408.1| - 2.9e-31 108.1 0.0 4.1e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 NosL RskA PF10099.4 gi|389849173|ref|YP_006351409.1| - 0.0064 16.2 0.1 0.0078 15.9 0.1 1.2 1 0 0 1 1 1 1 Anti-sigma-K factor rskA Plug PF07715.10 gi|389849173|ref|YP_006351409.1| - 0.053 13.8 1.1 1.7 8.9 0.7 2.1 1 1 0 1 1 1 0 TonB-dependent Receptor Plug Domain OCC1 PF15506.1 gi|389849173|ref|YP_006351409.1| - 0.074 12.9 1.7 0.074 12.9 1.2 2.4 2 0 0 2 2 2 0 OCC1 family PadR PF03551.9 gi|389849174|ref|YP_006351410.1| - 4.7e-10 39.0 0.1 5.6e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389849174|ref|YP_006351410.1| - 0.0026 18.0 0.0 0.0045 17.2 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|389849174|ref|YP_006351410.1| - 0.0045 16.9 0.0 0.0055 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.14 gi|389849174|ref|YP_006351410.1| - 0.033 14.1 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family DUF1495 PF07381.6 gi|389849174|ref|YP_006351410.1| - 0.04 13.5 0.1 0.049 13.2 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.1 gi|389849174|ref|YP_006351410.1| - 0.13 11.8 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_20 PF12840.2 gi|389849175|ref|YP_006351411.1| - 0.00011 21.9 1.1 0.0037 17.0 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389849175|ref|YP_006351411.1| - 0.032 13.9 0.0 0.93 9.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|389849175|ref|YP_006351411.1| - 0.04 13.5 0.0 0.099 12.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF58 PF01882.13 gi|389849175|ref|YP_006351411.1| - 0.05 13.7 0.2 0.091 12.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF58 TFIIE-A_C-term PF11521.3 gi|389849175|ref|YP_006351411.1| - 0.095 12.6 0.3 0.53 10.2 0.0 2.0 1 1 1 2 2 2 0 C-terminal general transcription factor TFIIE alpha FA_desaturase PF00487.19 gi|389849175|ref|YP_006351411.1| - 0.16 11.4 4.7 0.24 10.7 3.2 1.2 1 0 0 1 1 1 0 Fatty acid desaturase PEMT PF04191.8 gi|389849175|ref|YP_006351411.1| - 3.5 7.7 8.3 3.9 7.6 2.7 2.5 2 2 2 4 4 4 0 Phospholipid methyltransferase NTP_transferase PF00483.18 gi|389849177|ref|YP_006351413.1| - 9.7e-28 97.1 0.0 1.2e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389849177|ref|YP_006351413.1| - 7e-17 61.9 0.1 1.2e-16 61.2 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|389849177|ref|YP_006351413.1| - 5.2e-16 57.3 22.0 7.1e-06 25.2 0.4 5.1 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389849177|ref|YP_006351413.1| - 1.6e-07 30.7 14.6 0.00047 19.6 3.5 6.1 4 2 3 7 7 7 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|389849177|ref|YP_006351413.1| - 9.9e-05 21.9 0.1 0.00016 21.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SIS PF01380.17 gi|389849178|ref|YP_006351414.1| - 6.8e-48 161.5 0.5 1.5e-23 82.7 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|389849178|ref|YP_006351414.1| - 6.4e-25 87.6 0.1 1.6e-24 86.3 0.1 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|389849178|ref|YP_006351414.1| - 1.3e-21 76.7 0.2 3.1e-15 55.7 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|389849178|ref|YP_006351414.1| - 7.7e-21 74.1 0.0 2e-20 72.7 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|389849178|ref|YP_006351414.1| - 1.3e-07 30.5 0.0 2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|389849178|ref|YP_006351414.1| - 0.00076 19.2 0.7 0.04 13.6 0.0 2.9 2 1 0 2 2 2 1 SIS domain HTH_20 PF12840.2 gi|389849179|ref|YP_006351415.1| - 5.6e-11 42.0 0.1 1.1e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389849179|ref|YP_006351415.1| - 3e-09 36.4 0.0 4.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|389849179|ref|YP_006351415.1| - 4.2e-07 29.4 0.0 7.7e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|389849179|ref|YP_006351415.1| - 5.5e-07 29.1 0.1 1.7e-06 27.6 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.5 gi|389849179|ref|YP_006351415.1| - 5.8e-07 29.0 0.0 1.1e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|389849179|ref|YP_006351415.1| - 4.7e-05 22.8 1.3 4.7e-05 22.8 0.0 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|389849179|ref|YP_006351415.1| - 5e-05 22.8 0.0 8.5e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|389849179|ref|YP_006351415.1| - 0.00022 20.5 0.1 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389849179|ref|YP_006351415.1| - 0.00032 20.1 0.1 0.00067 19.1 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|389849179|ref|YP_006351415.1| - 0.00084 19.0 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|389849179|ref|YP_006351415.1| - 0.0014 18.5 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family MarR PF01047.17 gi|389849179|ref|YP_006351415.1| - 0.0014 18.2 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|389849179|ref|YP_006351415.1| - 0.0066 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HxlR PF01638.12 gi|389849179|ref|YP_006351415.1| - 0.007 15.9 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|389849179|ref|YP_006351415.1| - 0.0074 16.5 0.0 0.026 14.8 0.0 2.0 3 0 0 3 3 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|389849179|ref|YP_006351415.1| - 0.0076 15.6 0.0 0.021 14.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Phage_rep_org_N PF09681.5 gi|389849179|ref|YP_006351415.1| - 0.009 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) Sigma70_r4 PF04545.11 gi|389849179|ref|YP_006351415.1| - 0.0095 15.2 0.0 0.1 11.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|389849179|ref|YP_006351415.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|389849179|ref|YP_006351415.1| - 0.016 15.0 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4423 PF14394.1 gi|389849179|ref|YP_006351415.1| - 0.021 14.3 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|389849179|ref|YP_006351415.1| - 0.051 13.2 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TetR_N PF00440.18 gi|389849179|ref|YP_006351415.1| - 0.067 12.8 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|389849179|ref|YP_006351415.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|389849179|ref|YP_006351415.1| - 0.076 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.2 gi|389849179|ref|YP_006351415.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|389849179|ref|YP_006351415.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|389849179|ref|YP_006351415.1| - 0.13 12.3 0.0 0.34 11.0 0.0 1.8 1 1 1 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.7 gi|389849179|ref|YP_006351415.1| - 0.15 11.6 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MVP_shoulder PF11978.3 gi|389849182|ref|YP_006351418.1| - 0.099 12.5 0.4 0.22 11.4 0.1 1.6 1 1 1 2 2 2 0 Shoulder domain HxlR PF01638.12 gi|389849183|ref|YP_006351419.1| - 2.1e-22 78.5 0.0 2.5e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|389849183|ref|YP_006351419.1| - 1.1e-06 28.8 0.1 1.9e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|389849183|ref|YP_006351419.1| - 2.4e-05 24.2 0.0 3.2e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389849183|ref|YP_006351419.1| - 0.0007 19.2 0.0 0.00099 18.7 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|389849183|ref|YP_006351419.1| - 0.001 18.7 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|389849183|ref|YP_006351419.1| - 0.0014 18.2 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389849183|ref|YP_006351419.1| - 0.0057 16.3 0.0 0.0076 15.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389849183|ref|YP_006351419.1| - 0.0062 16.2 0.0 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|389849183|ref|YP_006351419.1| - 0.021 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|389849183|ref|YP_006351419.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Connexin50 PF03509.9 gi|389849183|ref|YP_006351419.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 Gap junction alpha-8 protein (Cx50) HTH_11 PF08279.7 gi|389849183|ref|YP_006351419.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|389849184|ref|YP_006351420.1| - 3.4e-25 87.9 0.0 1.4e-24 86.0 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|389849184|ref|YP_006351420.1| - 3.6e-07 29.5 0.0 5.5e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.12 gi|389849184|ref|YP_006351420.1| - 0.028 13.9 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit NTP_transferase PF00483.18 gi|389849185|ref|YP_006351421.1| - 4.6e-42 144.0 0.0 6.3e-42 143.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389849185|ref|YP_006351421.1| - 1.7e-16 60.6 0.1 2.9e-16 59.9 0.1 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|389849185|ref|YP_006351421.1| - 1.8e-12 46.1 10.1 0.00054 19.3 0.2 4.6 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|389849185|ref|YP_006351421.1| - 0.00021 20.9 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|389849185|ref|YP_006351421.1| - 0.095 12.2 8.0 1.6 8.3 0.8 4.2 3 1 2 5 5 5 0 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.8 gi|389849185|ref|YP_006351421.1| - 1.2 9.1 5.5 2.1 8.4 0.3 2.4 1 1 1 2 2 2 0 Polymer-forming cytoskeletal IMPDH PF00478.20 gi|389849186|ref|YP_006351422.1| - 6.1e-112 373.9 2.5 1e-111 373.2 1.7 1.3 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|389849186|ref|YP_006351422.1| - 6.7e-13 48.4 8.1 1.2e-09 37.7 5.6 2.3 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|389849186|ref|YP_006351422.1| - 7.2e-09 34.9 3.5 1e-08 34.4 1.6 1.6 1 1 1 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|389849186|ref|YP_006351422.1| - 3.6e-07 29.6 0.2 0.0004 19.7 0.0 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|389849186|ref|YP_006351422.1| - 0.00024 20.1 0.6 0.00051 19.0 0.2 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase QRPTase_C PF01729.14 gi|389849186|ref|YP_006351422.1| - 0.0028 17.2 0.1 0.052 13.0 0.0 2.2 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.14 gi|389849186|ref|YP_006351422.1| - 0.003 16.6 0.6 0.016 14.2 0.2 2.1 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|389849186|ref|YP_006351422.1| - 0.0041 16.1 0.2 0.0098 14.8 0.2 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|389849186|ref|YP_006351422.1| - 0.0076 15.5 1.1 0.04 13.1 0.1 2.2 2 0 0 2 2 2 1 PcrB family NanE PF04131.9 gi|389849186|ref|YP_006351422.1| - 0.013 14.5 3.8 0.21 10.5 1.6 3.1 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|389849186|ref|YP_006351422.1| - 0.026 13.6 0.4 0.06 12.4 0.1 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|389849186|ref|YP_006351422.1| - 0.042 13.0 0.2 0.042 13.0 0.1 2.1 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase ChaC PF04752.7 gi|389849186|ref|YP_006351422.1| - 0.058 13.3 0.1 6.7 6.6 0.0 2.3 2 0 0 2 2 2 0 ChaC-like protein Cas_Cas6 PF01881.11 gi|389849187|ref|YP_006351423.1| - 1.7e-08 34.8 0.0 2.5e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.5 gi|389849188|ref|YP_006351424.1| - 5.5e-13 48.2 0.0 7.2e-08 31.3 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) DUF694 PF05107.7 gi|389849189|ref|YP_006351425.1| - 3.7e-63 213.3 0.0 4.4e-63 213.0 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|389849190|ref|YP_006351426.1| - 4.8e-08 32.9 0.0 5.9e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|389849191|ref|YP_006351427.1| - 0.0003 20.3 0.0 0.00083 18.8 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|389849191|ref|YP_006351427.1| - 0.0033 17.2 0.0 0.0073 16.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|389849191|ref|YP_006351427.1| - 0.022 13.9 0.0 0.057 12.6 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein HD PF01966.17 gi|389849191|ref|YP_006351427.1| - 0.024 14.6 0.1 0.086 12.8 0.0 2.0 2 0 0 2 2 2 0 HD domain Cas_Cas4 PF01930.12 gi|389849192|ref|YP_006351428.1| - 3.3e-48 163.6 0.0 3.8e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|389849192|ref|YP_006351428.1| - 2.9e-08 33.4 0.0 3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.11 gi|389849193|ref|YP_006351429.1| - 2.2e-84 282.8 0.0 2.6e-84 282.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|389849194|ref|YP_006351430.1| - 3.8e-17 62.2 0.2 4.3e-17 62.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SHS2_FTSA PF02491.15 gi|389849194|ref|YP_006351430.1| - 0.017 15.0 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA DUF2520 PF10728.4 gi|389849194|ref|YP_006351430.1| - 0.1 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) DUF4242 PF14026.1 gi|389849195|ref|YP_006351431.1| - 7e-21 74.1 0.2 7.7e-21 73.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) Peptidase_S74 PF13884.1 gi|389849195|ref|YP_006351431.1| - 0.036 14.2 0.0 0.055 13.6 0.0 1.4 1 1 0 1 1 1 0 Chaperone of endosialidase AP_endonuc_2 PF01261.19 gi|389849196|ref|YP_006351432.1| - 0.0048 16.2 0.0 0.021 14.0 0.0 1.8 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.11 gi|389849197|ref|YP_006351433.1| - 4.3e-44 150.6 46.7 1.6e-34 119.2 20.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|389849197|ref|YP_006351433.1| - 0.00027 19.4 3.2 0.00027 19.4 2.2 2.4 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|389849197|ref|YP_006351433.1| - 0.02 13.0 5.7 0.035 12.2 3.9 1.4 1 0 0 1 1 1 0 Transmembrane secretion effector DUF1228 PF06779.9 gi|389849197|ref|YP_006351433.1| - 0.035 14.1 0.1 0.035 14.1 0.0 3.8 5 1 1 6 6 6 0 Protein of unknown function (DUF1228) zf-ribbon_3 PF13248.1 gi|389849198|ref|YP_006351434.1| - 0.0047 16.0 0.7 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|389849198|ref|YP_006351434.1| - 0.038 13.8 0.6 0.054 13.3 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|389849198|ref|YP_006351434.1| - 0.051 13.8 1.7 0.13 12.5 1.2 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar ATE_N PF04376.8 gi|389849198|ref|YP_006351434.1| - 0.051 13.3 1.6 0.087 12.6 1.2 1.5 1 1 0 1 1 1 0 Arginine-tRNA-protein transferase, N terminus DNA_ligase_ZBD PF03119.11 gi|389849198|ref|YP_006351434.1| - 0.066 12.9 1.1 0.076 12.7 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|389849198|ref|YP_006351434.1| - 0.082 12.6 1.1 5.1 6.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|389849198|ref|YP_006351434.1| - 0.15 12.0 1.0 2.7 8.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|389849198|ref|YP_006351434.1| - 0.17 11.6 1.7 2.8 7.7 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|389849198|ref|YP_006351434.1| - 0.18 11.5 1.4 2.5 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HMA PF00403.21 gi|389849198|ref|YP_006351434.1| - 0.21 11.7 2.0 8.3 6.6 0.0 2.4 2 1 0 2 2 2 0 Heavy-metal-associated domain zinc_ribbon_5 PF13719.1 gi|389849198|ref|YP_006351434.1| - 0.21 11.1 1.5 2.8 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|389849198|ref|YP_006351434.1| - 0.22 11.3 1.9 1.2 8.9 1.3 1.9 1 1 0 1 1 1 0 zinc-ribbons Yippee-Mis18 PF03226.9 gi|389849198|ref|YP_006351434.1| - 0.24 11.4 1.1 2.5 8.1 0.0 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly CpXC PF14353.1 gi|389849198|ref|YP_006351434.1| - 0.35 10.8 1.8 0.59 10.0 1.2 1.4 1 1 0 1 1 1 0 CpXC protein zf-TFIIB PF13453.1 gi|389849198|ref|YP_006351434.1| - 0.43 9.8 2.7 1.2 8.4 2.0 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|389849198|ref|YP_006351434.1| - 6.4 6.1 5.9 64 2.9 4.1 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|389849199|ref|YP_006351435.1| - 0.00023 20.2 0.8 0.43 9.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389849199|ref|YP_006351435.1| - 0.0089 15.4 0.5 1.8 8.1 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|389849199|ref|YP_006351435.1| - 0.011 15.3 1.2 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|389849199|ref|YP_006351435.1| - 0.029 14.6 2.4 0.33 11.2 1.7 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|389849199|ref|YP_006351435.1| - 0.052 13.3 1.1 0.34 10.7 0.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.8 gi|389849199|ref|YP_006351435.1| - 0.06 12.8 0.6 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_5 PF13719.1 gi|389849199|ref|YP_006351435.1| - 0.12 11.9 0.5 9.5 5.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|389849199|ref|YP_006351435.1| - 0.13 11.7 0.3 12 5.5 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 DUF2082 PF09855.4 gi|389849199|ref|YP_006351435.1| - 0.14 12.0 0.3 0.21 11.4 0.2 1.3 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.1 gi|389849199|ref|YP_006351435.1| - 0.14 11.8 0.5 8.5 6.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|389849199|ref|YP_006351435.1| - 0.14 11.8 1.7 4.9 6.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-HYPF PF07503.7 gi|389849199|ref|YP_006351435.1| - 0.23 10.8 1.9 12 5.4 0.0 2.2 2 0 0 2 2 2 0 HypF finger RRN7 PF11781.3 gi|389849199|ref|YP_006351435.1| - 0.31 10.5 2.0 4.1 6.9 0.0 2.4 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_5 PF14634.1 gi|389849199|ref|YP_006351435.1| - 0.33 10.7 2.2 1.6 8.5 1.6 1.9 1 1 1 2 2 2 0 zinc-RING finger domain GDPD PF03009.12 gi|389849200|ref|YP_006351436.1| - 4.1e-32 111.7 0.1 7.6e-32 110.8 0.0 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|389849200|ref|YP_006351436.1| - 0.00062 19.8 0.1 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Urocanase PF01175.13 gi|389849201|ref|YP_006351437.1| - 2.9e-256 850.8 0.1 3.4e-256 850.5 0.0 1.0 1 0 0 1 1 1 1 Urocanase UPF0150 PF03681.10 gi|389849201|ref|YP_006351437.1| - 0.017 14.7 1.6 0.075 12.6 1.1 2.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Transpep_BrtH PF14399.1 gi|389849201|ref|YP_006351437.1| - 0.046 13.0 0.0 0.084 12.1 0.0 1.3 1 0 0 1 1 1 0 NlpC/p60-like transpeptidase GrpE PF01025.14 gi|389849201|ref|YP_006351437.1| - 0.095 12.2 0.5 0.31 10.5 0.1 1.9 1 1 1 2 2 2 0 GrpE Arginase PF00491.16 gi|389849202|ref|YP_006351438.1| - 5e-65 219.5 1.8 5.6e-65 219.3 1.2 1.0 1 0 0 1 1 1 1 Arginase family Amidohydro_4 PF13147.1 gi|389849203|ref|YP_006351439.1| - 1.5e-17 64.5 16.5 8.1e-17 62.1 11.4 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|389849203|ref|YP_006351439.1| - 3.4e-17 63.1 0.9 2e-08 34.2 0.0 2.2 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|389849203|ref|YP_006351439.1| - 2.4e-13 49.6 0.7 1.8e-12 46.8 0.5 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|389849203|ref|YP_006351439.1| - 5.5e-08 32.4 14.4 5.9e-05 22.4 5.2 2.7 1 1 1 2 2 2 2 Amidohydrolase family Lyase_aromatic PF00221.14 gi|389849204|ref|YP_006351440.1| - 8.2e-186 618.0 0.9 9.5e-186 617.8 0.6 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Se-cys_synth_N PF12390.3 gi|389849204|ref|YP_006351440.1| - 5.4 7.2 6.9 11 6.2 0.1 4.1 4 0 0 4 4 4 0 Selenocysteine synthase N terminal PQQ_2 PF13360.1 gi|389849205|ref|YP_006351441.1| - 1.2e-25 90.4 7.9 4e-18 65.7 0.8 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389849205|ref|YP_006351441.1| - 4.5e-15 54.3 4.2 0.01 15.3 0.0 5.9 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389849205|ref|YP_006351441.1| - 4.1e-10 39.5 16.7 0.0015 18.7 0.1 5.9 8 0 0 8 8 8 3 PQQ-like domain DDE_Tnp_IS240 PF13610.1 gi|389849207|ref|YP_006351443.1| - 2.1e-27 95.8 0.1 2.9e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|389849207|ref|YP_006351443.1| - 9.4e-11 41.0 0.3 2.1e-10 39.9 0.2 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|389849207|ref|YP_006351443.1| - 5.8e-05 22.4 0.1 8e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|389849207|ref|YP_006351443.1| - 0.0064 16.5 0.4 0.041 13.9 0.1 2.2 1 1 1 2 2 2 1 Integrase core domain rve_2 PF13333.1 gi|389849207|ref|YP_006351443.1| - 0.036 14.1 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DUF2384 PF09722.5 gi|389849207|ref|YP_006351443.1| - 0.046 13.5 0.4 3.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DDE_Tnp_1 PF01609.16 gi|389849207|ref|YP_006351443.1| - 0.35 10.3 2.3 2 7.8 0.0 2.1 1 1 1 2 2 2 0 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|389849210|ref|YP_006351446.1| - 0.00087 19.4 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|389849210|ref|YP_006351446.1| - 0.0014 18.2 0.0 0.0022 17.5 0.0 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|389849211|ref|YP_006351447.1| - 1.1e-26 93.7 0.1 1.5e-26 93.3 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain Peripla_BP_2 PF01497.13 gi|389849212|ref|YP_006351448.1| - 7e-16 58.0 0.0 9.3e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389849212|ref|YP_006351448.1| - 0.00091 19.0 1.2 0.0025 17.6 0.8 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GATase_3 PF07685.9 gi|389849213|ref|YP_006351449.1| - 8.7e-34 116.3 0.0 1.4e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|389849213|ref|YP_006351449.1| - 1.6e-09 37.4 0.0 2.5e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|389849213|ref|YP_006351449.1| - 2.2e-09 37.1 0.0 3.5e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain GATase PF00117.23 gi|389849213|ref|YP_006351449.1| - 0.0091 15.4 0.0 0.021 14.3 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|389849213|ref|YP_006351449.1| - 0.083 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|389849213|ref|YP_006351449.1| - 0.18 11.2 1.1 4.9 6.5 0.7 2.3 1 1 0 1 1 1 0 Peptidase C26 AMP-binding PF00501.23 gi|389849214|ref|YP_006351450.1| - 1.7e-89 300.1 0.1 2e-89 299.9 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389849214|ref|YP_006351450.1| - 3.5e-15 56.6 0.0 7.8e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Sp38 PF07354.7 gi|389849214|ref|YP_006351450.1| - 0.15 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 Zona-pellucida-binding protein (Sp38) DoxX PF07681.7 gi|389849215|ref|YP_006351451.1| - 9.6e-08 32.3 9.5 9.6e-08 32.3 6.6 1.9 2 1 0 2 2 2 1 DoxX DoxD PF04173.8 gi|389849215|ref|YP_006351451.1| - 0.00096 18.8 5.9 0.0018 18.0 4.1 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD DUF2639 PF11121.3 gi|389849216|ref|YP_006351452.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2639) Pyr_redox_2 PF07992.9 gi|389849217|ref|YP_006351453.1| - 3.1e-36 125.1 0.6 1.9e-35 122.5 0.4 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389849217|ref|YP_006351453.1| - 5.7e-22 77.9 0.8 2.7e-17 62.9 0.2 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389849217|ref|YP_006351453.1| - 4.2e-15 55.5 1.4 2.5e-05 23.3 0.5 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|389849217|ref|YP_006351453.1| - 1.9e-13 50.4 0.2 6.1e-13 48.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|389849217|ref|YP_006351453.1| - 2.5e-09 37.5 0.0 0.00053 20.1 0.0 3.2 1 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389849217|ref|YP_006351453.1| - 5.3e-08 31.7 0.0 0.065 11.6 0.0 4.1 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|389849217|ref|YP_006351453.1| - 2.7e-07 29.7 1.9 0.15 10.8 0.0 3.4 2 1 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.1 gi|389849217|ref|YP_006351453.1| - 4.1e-07 29.9 0.2 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|389849217|ref|YP_006351453.1| - 0.00036 19.7 0.2 0.13 11.2 0.2 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|389849217|ref|YP_006351453.1| - 0.00091 18.4 0.0 1.6 7.6 0.0 2.8 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|389849217|ref|YP_006351453.1| - 0.0036 17.0 0.5 10 5.8 0.1 3.6 3 1 1 4 4 4 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|389849217|ref|YP_006351453.1| - 0.0039 16.8 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|389849217|ref|YP_006351453.1| - 0.0068 15.3 0.2 0.89 8.4 0.0 2.8 2 1 1 3 3 3 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|389849217|ref|YP_006351453.1| - 0.0073 15.2 0.0 0.015 14.2 0.0 1.5 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|389849217|ref|YP_006351453.1| - 0.013 14.6 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|389849217|ref|YP_006351453.1| - 0.019 14.5 1.6 0.032 13.7 0.0 2.1 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|389849217|ref|YP_006351453.1| - 0.026 13.8 0.2 0.074 12.4 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|389849217|ref|YP_006351453.1| - 0.028 13.0 0.6 0.49 8.9 0.0 2.6 2 1 1 3 3 3 0 Tryptophan halogenase TrkA_N PF02254.13 gi|389849217|ref|YP_006351453.1| - 0.037 14.0 0.1 8.5 6.4 0.0 3.1 3 0 0 3 3 2 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|389849217|ref|YP_006351453.1| - 0.039 14.2 0.0 4 7.7 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding PALP PF00291.20 gi|389849218|ref|YP_006351454.1| - 4.8e-43 147.5 0.6 5.7e-43 147.2 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Jag_N PF14804.1 gi|389849218|ref|YP_006351454.1| - 0.022 14.7 0.2 7 6.7 0.0 3.3 3 0 0 3 3 3 0 Jag N-terminus CN_hydrolase PF00795.17 gi|389849219|ref|YP_006351455.1| - 4.5e-33 114.1 0.0 1.1e-32 112.9 0.0 1.6 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase DUF3673 PF12425.3 gi|389849219|ref|YP_006351455.1| - 3.1 7.7 6.4 11 5.9 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3673) Cupin_2 PF07883.6 gi|389849221|ref|YP_006351457.1| - 1.4e-08 34.1 0.1 2.2e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|389849221|ref|YP_006351457.1| - 3.5e-05 23.1 0.1 4.9e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) cNMP_binding PF00027.24 gi|389849221|ref|YP_006351457.1| - 0.0068 16.1 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain FdtA PF05523.6 gi|389849221|ref|YP_006351457.1| - 0.079 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 WxcM-like, C-terminal RNaseH_C PF09293.5 gi|389849222|ref|YP_006351458.1| - 0.059 13.2 0.4 0.067 13.1 0.3 1.1 1 0 0 1 1 1 0 T4 RNase H, C terminal EthD PF07110.6 gi|389849223|ref|YP_006351459.1| - 6.2e-16 59.1 0.6 1.3e-15 58.0 0.4 1.5 1 1 0 1 1 1 1 EthD domain MmlI PF09448.5 gi|389849223|ref|YP_006351459.1| - 0.0048 16.6 0.1 0.027 14.2 0.1 1.8 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase Dabb PF07876.7 gi|389849223|ref|YP_006351459.1| - 0.012 16.0 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain IclR PF01614.13 gi|389849224|ref|YP_006351460.1| - 1.8e-28 98.8 0.0 2.9e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|389849224|ref|YP_006351460.1| - 3.4e-13 48.9 0.3 2e-11 43.3 0.2 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|389849224|ref|YP_006351460.1| - 3.6e-09 36.2 0.1 8.2e-09 35.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|389849224|ref|YP_006351460.1| - 4.4e-09 35.9 0.0 9.3e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849224|ref|YP_006351460.1| - 3.7e-08 32.6 0.1 9.1e-08 31.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389849224|ref|YP_006351460.1| - 5.5e-08 32.3 0.0 1.3e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389849224|ref|YP_006351460.1| - 4.7e-07 29.3 0.1 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|389849224|ref|YP_006351460.1| - 6e-06 25.8 0.1 1.6e-05 24.4 0.0 1.8 2 0 0 2 2 1 1 HTH domain Fe_dep_repress PF01325.14 gi|389849224|ref|YP_006351460.1| - 3.2e-05 23.7 0.0 7e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|389849224|ref|YP_006351460.1| - 0.00035 20.2 0.0 0.00084 18.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|389849224|ref|YP_006351460.1| - 0.00042 20.0 0.0 0.0015 18.2 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389849224|ref|YP_006351460.1| - 0.00052 19.4 0.1 0.0017 17.8 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|389849224|ref|YP_006351460.1| - 0.0042 17.2 0.1 0.013 15.6 0.0 1.8 2 1 0 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.7 gi|389849224|ref|YP_006351460.1| - 0.0043 16.6 0.1 0.025 14.1 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|389849224|ref|YP_006351460.1| - 0.0055 16.2 0.0 0.018 14.5 0.0 1.9 2 0 0 2 2 1 1 LexA DNA binding domain HTH_38 PF13936.1 gi|389849224|ref|YP_006351460.1| - 0.0071 15.8 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|389849224|ref|YP_006351460.1| - 0.0085 16.3 0.0 0.021 15.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|389849224|ref|YP_006351460.1| - 0.0097 16.0 0.1 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|389849224|ref|YP_006351460.1| - 0.013 14.9 0.4 0.041 13.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|389849224|ref|YP_006351460.1| - 0.013 15.0 0.0 0.032 13.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain z-alpha PF02295.12 gi|389849224|ref|YP_006351460.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_28 PF13518.1 gi|389849224|ref|YP_006351460.1| - 0.022 14.7 0.0 0.056 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.8 gi|389849224|ref|YP_006351460.1| - 0.024 14.0 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_45 PF14947.1 gi|389849224|ref|YP_006351460.1| - 0.025 14.3 0.0 0.076 12.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.11 gi|389849224|ref|YP_006351460.1| - 0.03 14.3 0.5 0.44 10.6 0.0 2.5 1 1 1 2 2 2 0 HemN C-terminal domain DUF2520 PF10728.4 gi|389849224|ref|YP_006351460.1| - 0.039 13.4 0.1 0.25 10.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2520) Rrf2 PF02082.15 gi|389849224|ref|YP_006351460.1| - 0.042 13.9 0.0 0.089 12.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Crp PF00325.15 gi|389849224|ref|YP_006351460.1| - 0.043 13.2 0.0 0.1 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_23 PF13384.1 gi|389849224|ref|YP_006351460.1| - 0.052 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.5 gi|389849224|ref|YP_006351460.1| - 0.065 12.9 0.0 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_1 PF00126.22 gi|389849224|ref|YP_006351460.1| - 0.098 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family EFF-AFF PF14884.1 gi|389849225|ref|YP_006351461.1| - 0.00071 17.7 0.9 0.00076 17.6 0.6 1.0 1 0 0 1 1 1 1 Type I membrane glycoproteins cell-cell fusogen ECH PF00378.15 gi|389849226|ref|YP_006351462.1| - 1e-63 214.7 0.3 1.3e-63 214.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|389849226|ref|YP_006351462.1| - 2.8e-06 27.4 0.1 1.2e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region 3HCDH_N PF02737.13 gi|389849227|ref|YP_006351463.1| - 1.4e-62 210.5 2.2 1.9e-62 210.0 1.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|389849227|ref|YP_006351463.1| - 2e-30 105.0 0.0 4.6e-30 103.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|389849227|ref|YP_006351463.1| - 1.5e-07 31.2 0.0 2.8e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|389849227|ref|YP_006351463.1| - 0.00012 21.9 2.8 0.00012 21.9 1.9 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|389849227|ref|YP_006351463.1| - 0.001 19.4 2.7 0.01 16.2 1.9 2.3 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|389849227|ref|YP_006351463.1| - 0.0024 17.3 0.2 0.0051 16.2 0.2 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thiolase_N PF00108.18 gi|389849228|ref|YP_006351464.1| - 3.9e-62 209.6 0.0 5.4e-61 205.8 0.0 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389849228|ref|YP_006351464.1| - 3.5e-51 171.7 0.1 5.4e-51 171.1 0.1 1.3 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|389849228|ref|YP_006351464.1| - 0.013 15.5 0.0 0.057 13.4 0.0 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.3 gi|389849229|ref|YP_006351465.1| - 1.4e-09 37.6 3.2 3.4e-09 36.3 2.2 1.7 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|389849229|ref|YP_006351465.1| - 4e-06 26.9 1.4 1.3e-05 25.3 1.0 1.9 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|389849229|ref|YP_006351465.1| - 0.0024 17.8 0.4 0.0024 17.8 0.3 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Chal_sti_synt_N PF00195.14 gi|389849229|ref|YP_006351465.1| - 0.011 14.9 0.0 0.067 12.4 0.0 2.1 2 0 0 2 2 2 0 Chalcone and stilbene synthases, N-terminal domain Thiolase_N PF00108.18 gi|389849230|ref|YP_006351466.1| - 2.4e-12 46.3 0.6 4.7e-11 42.1 0.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389849230|ref|YP_006351466.1| - 4.7e-11 42.1 0.5 1.3e-10 40.7 0.1 2.0 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|389849230|ref|YP_006351466.1| - 1.7e-06 27.7 3.0 5e-06 26.1 2.0 1.9 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|389849230|ref|YP_006351466.1| - 0.0023 17.5 2.1 0.38 10.4 0.2 2.7 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|389849230|ref|YP_006351466.1| - 0.26 11.1 2.8 1.2 8.9 0.0 3.0 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain AMP-binding_C_2 PF14535.1 gi|389849231|ref|YP_006351467.1| - 5e-23 80.9 0.0 1.2e-22 79.7 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|389849231|ref|YP_006351467.1| - 2.3e-19 69.1 0.4 6.6e-19 67.5 0.3 1.7 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|389849231|ref|YP_006351467.1| - 0.00029 19.6 0.0 0.00092 17.9 0.0 1.7 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|389849231|ref|YP_006351467.1| - 0.0027 16.3 0.0 0.062 11.8 0.0 2.6 3 0 0 3 3 3 1 GH3 auxin-responsive promoter 4HBT PF03061.17 gi|389849232|ref|YP_006351468.1| - 1.5e-16 60.2 0.9 2.7e-16 59.4 0.5 1.5 1 1 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|389849232|ref|YP_006351468.1| - 5.8e-08 32.7 0.0 7.9e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|389849232|ref|YP_006351468.1| - 0.00073 19.3 0.2 0.00082 19.2 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|389849232|ref|YP_006351468.1| - 0.0084 15.2 0.1 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase MaoC_dehydratas PF01575.14 gi|389849233|ref|YP_006351469.1| - 8.6e-17 60.6 0.0 1.1e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389849233|ref|YP_006351469.1| - 0.0012 18.5 0.2 0.0034 17.1 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Glyoxalase_4 PF13669.1 gi|389849234|ref|YP_006351470.1| - 1.8e-17 63.3 0.6 2.3e-17 62.9 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|389849234|ref|YP_006351470.1| - 2e-06 27.8 0.2 2.5e-06 27.5 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|389849234|ref|YP_006351470.1| - 1.2e-05 25.8 0.7 0.0011 19.5 0.1 2.1 1 1 1 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389849234|ref|YP_006351470.1| - 0.017 15.1 0.0 0.046 13.6 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Bac_luciferase PF00296.15 gi|389849235|ref|YP_006351471.1| - 7.1e-63 212.5 0.5 8.1e-63 212.3 0.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Peripla_BP_6 PF13458.1 gi|389849236|ref|YP_006351472.1| - 5.3e-69 233.1 6.3 6.9e-69 232.8 4.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|389849236|ref|YP_006351472.1| - 5.9e-40 137.1 0.2 7.1e-40 136.8 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|389849236|ref|YP_006351472.1| - 1.6e-20 73.2 0.8 2.2e-20 72.7 0.5 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.8 gi|389849236|ref|YP_006351472.1| - 0.098 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family BPD_transp_2 PF02653.11 gi|389849238|ref|YP_006351474.1| - 9.4e-78 260.8 76.7 2.4e-45 154.5 24.2 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component DUF2749 PF10907.3 gi|389849238|ref|YP_006351474.1| - 1.3 8.9 4.4 6 6.8 3.1 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) ABC_tran PF00005.22 gi|389849240|ref|YP_006351476.1| - 5.4e-29 101.2 0.0 7.2e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|389849240|ref|YP_006351476.1| - 4.7e-09 35.7 0.1 1.2e-08 34.4 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|389849240|ref|YP_006351476.1| - 1.9e-05 24.8 0.3 0.004 17.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389849240|ref|YP_006351476.1| - 0.00051 19.5 0.1 0.00096 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389849240|ref|YP_006351476.1| - 0.0016 18.8 0.0 0.0017 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|389849240|ref|YP_006351476.1| - 0.0037 16.8 0.0 0.0072 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389849240|ref|YP_006351476.1| - 0.017 15.1 0.1 0.024 14.6 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|389849240|ref|YP_006351476.1| - 0.019 14.8 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|389849240|ref|YP_006351476.1| - 0.09 11.9 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|389849240|ref|YP_006351476.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|389849240|ref|YP_006351476.1| - 0.18 11.0 0.2 0.9 8.7 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|389849240|ref|YP_006351476.1| - 0.38 10.1 1.7 0.73 9.2 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|389849242|ref|YP_006351478.1| - 3.6e-32 111.5 0.0 5e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389849242|ref|YP_006351478.1| - 6.6e-10 39.4 0.1 2.2e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389849242|ref|YP_006351478.1| - 0.0006 19.2 0.1 0.0024 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389849242|ref|YP_006351478.1| - 0.0024 17.8 1.2 0.013 15.5 0.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389849242|ref|YP_006351478.1| - 0.0028 17.1 0.3 0.0055 16.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389849242|ref|YP_006351478.1| - 0.0042 17.4 0.1 0.0058 16.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389849242|ref|YP_006351478.1| - 0.0055 15.9 0.7 0.21 10.7 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389849242|ref|YP_006351478.1| - 0.0061 16.6 1.4 0.13 12.3 0.1 2.7 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|389849242|ref|YP_006351478.1| - 0.0089 16.2 0.7 0.056 13.6 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|389849242|ref|YP_006351478.1| - 0.017 14.8 0.7 0.34 10.5 0.1 2.2 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|389849242|ref|YP_006351478.1| - 0.032 13.0 0.2 0.053 12.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|389849242|ref|YP_006351478.1| - 0.051 13.4 0.2 0.49 10.3 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|389849242|ref|YP_006351478.1| - 0.064 12.4 0.2 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|389849242|ref|YP_006351478.1| - 0.085 12.5 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|389849242|ref|YP_006351478.1| - 0.087 12.4 0.2 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AIG1 PF04548.11 gi|389849242|ref|YP_006351478.1| - 0.11 11.6 1.2 0.23 10.5 0.2 1.8 2 0 0 2 2 2 0 AIG1 family AAA_15 PF13175.1 gi|389849242|ref|YP_006351478.1| - 0.18 10.7 0.0 2.2 7.2 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|389849242|ref|YP_006351478.1| - 0.3 9.6 1.9 11 4.4 0.1 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AMP-binding_C_2 PF14535.1 gi|389849243|ref|YP_006351479.1| - 1.1e-22 79.9 0.0 2e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|389849243|ref|YP_006351479.1| - 1.5e-18 66.4 0.4 3.5e-18 65.2 0.3 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|389849243|ref|YP_006351479.1| - 1.4e-06 27.2 0.0 4.3e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|389849243|ref|YP_006351479.1| - 0.028 12.9 0.0 0.61 8.5 0.0 2.2 2 0 0 2 2 2 0 GH3 auxin-responsive promoter 4HBT PF03061.17 gi|389849244|ref|YP_006351480.1| - 2.9e-14 52.9 0.1 4.1e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|389849244|ref|YP_006351480.1| - 9.2e-07 28.8 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|389849244|ref|YP_006351480.1| - 3e-06 27.1 0.3 3.4e-06 26.9 0.2 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|389849244|ref|YP_006351480.1| - 0.097 11.8 0.5 0.13 11.3 0.3 1.3 1 1 0 1 1 1 0 Polyketide synthase dehydratase Aldedh PF00171.17 gi|389849245|ref|YP_006351481.1| - 5.5e-181 601.9 0.1 6.2e-181 601.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.9 gi|389849245|ref|YP_006351481.1| - 0.026 14.6 0.1 0.11 12.6 0.0 2.1 1 1 0 1 1 1 0 YCII-related domain LuxC PF05893.9 gi|389849245|ref|YP_006351481.1| - 0.053 12.2 0.0 0.095 11.3 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) Pribosyltran PF00156.22 gi|389849245|ref|YP_006351481.1| - 0.074 12.7 0.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase domain DUF59 PF01883.14 gi|389849247|ref|YP_006351483.1| - 2.2e-10 40.3 0.0 4.2e-10 39.4 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF59 PaaA_PaaC PF05138.7 gi|389849248|ref|YP_006351484.1| - 3.7e-62 209.6 1.1 4.2e-62 209.5 0.8 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|389849248|ref|YP_006351484.1| - 2.5e-07 30.3 0.2 7e-07 28.9 0.1 1.7 1 1 0 2 2 2 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like DUF2635 PF10948.3 gi|389849248|ref|YP_006351484.1| - 0.056 12.7 1.5 1.3 8.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) Rubrerythrin PF02915.12 gi|389849248|ref|YP_006351484.1| - 0.11 12.8 0.9 0.35 11.1 0.1 2.3 1 1 1 2 2 2 0 Rubrerythrin PaaB PF06243.6 gi|389849249|ref|YP_006351485.1| - 5.4e-26 90.5 0.1 6.3e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.7 gi|389849250|ref|YP_006351486.1| - 3.8e-69 232.5 3.4 5e-69 232.1 2.4 1.2 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.7 gi|389849251|ref|YP_006351487.1| - 2.7e-20 71.6 0.0 4e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|389849251|ref|YP_006351487.1| - 0.0034 16.7 0.0 0.0061 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389849251|ref|YP_006351487.1| - 0.02 14.5 0.0 0.045 13.4 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|389849251|ref|YP_006351487.1| - 0.022 14.2 0.1 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|389849251|ref|YP_006351487.1| - 0.058 13.7 0.0 11 6.4 0.0 2.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain ECH PF00378.15 gi|389849252|ref|YP_006351488.1| - 1.1e-57 194.9 0.3 1.2e-57 194.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Lipase_GDSL_2 PF13472.1 gi|389849252|ref|YP_006351488.1| - 0.032 14.3 4.4 0.068 13.3 3.0 1.7 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Amidohydro_2 PF04909.9 gi|389849253|ref|YP_006351489.1| - 3.7e-54 184.1 1.4 6e-54 183.4 0.9 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|389849253|ref|YP_006351489.1| - 0.0044 16.2 0.0 0.038 13.1 0.0 2.0 2 0 0 2 2 2 1 TatD related DNase Peripla_BP_2 PF01497.13 gi|389849254|ref|YP_006351490.1| - 4.2e-12 45.7 0.0 8.2e-12 44.7 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein DUF2268 PF10026.4 gi|389849255|ref|YP_006351491.1| - 0.005 16.2 0.0 0.0071 15.7 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.4 gi|389849255|ref|YP_006351491.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Antimicrobial_8 PF08103.6 gi|389849255|ref|YP_006351491.1| - 0.46 10.5 2.3 1.1 9.3 1.6 1.6 1 0 0 1 1 1 0 Uperin family rve_3 PF13683.1 gi|389849256|ref|YP_006351492.1| - 1.5e-07 30.8 0.0 1.5e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|389849256|ref|YP_006351492.1| - 0.027 14.3 0.0 0.087 12.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DUF3244 PF11589.3 gi|389849257|ref|YP_006351493.1| - 0.073 12.7 0.1 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) DDE_Tnp_IS240 PF13610.1 gi|389849259|ref|YP_006351495.1| - 3.7e-06 26.9 0.0 4.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|389849260|ref|YP_006351496.1| - 0.026 13.7 0.0 0.027 13.6 0.0 1.0 1 0 0 1 1 1 0 Transposase IS66 family LTD PF00932.14 gi|389849263|ref|YP_006351499.1| - 8.8e-05 22.5 0.0 0.00011 22.2 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Methyltransf_18 PF12847.2 gi|389849264|ref|YP_006351500.1| - 1.2e-16 61.3 0.1 1.6e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|389849264|ref|YP_006351500.1| - 2.5e-13 49.6 0.0 2.6e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|389849264|ref|YP_006351500.1| - 2.6e-10 40.2 0.0 6.4e-10 38.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389849264|ref|YP_006351500.1| - 2.9e-10 40.4 0.0 4.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389849264|ref|YP_006351500.1| - 2.9e-10 40.4 0.0 7.2e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389849264|ref|YP_006351500.1| - 1.6e-09 37.2 0.0 2.2e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|389849264|ref|YP_006351500.1| - 6.4e-09 35.5 0.0 7.7e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389849264|ref|YP_006351500.1| - 4.2e-07 30.0 0.2 9.1e-07 28.9 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389849264|ref|YP_006351500.1| - 6e-06 25.7 0.0 1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|389849264|ref|YP_006351500.1| - 2.8e-05 24.4 0.1 5.5e-05 23.5 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|389849264|ref|YP_006351500.1| - 0.0012 18.3 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|389849264|ref|YP_006351500.1| - 0.0023 17.4 0.0 0.0027 17.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF938 PF06080.7 gi|389849264|ref|YP_006351500.1| - 0.034 13.6 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_24 PF13578.1 gi|389849264|ref|YP_006351500.1| - 0.077 13.8 0.0 0.15 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|389849264|ref|YP_006351500.1| - 0.11 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Abhydrolase_6 PF12697.2 gi|389849265|ref|YP_006351501.1| - 7.2e-38 130.7 0.4 8.4e-38 130.5 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389849265|ref|YP_006351501.1| - 3.6e-22 79.0 0.0 1.8e-21 76.7 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389849265|ref|YP_006351501.1| - 2.9e-16 59.5 1.3 1.7e-14 53.8 0.9 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|389849265|ref|YP_006351501.1| - 4.8e-06 25.2 0.0 6.1e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|389849265|ref|YP_006351501.1| - 2.8e-05 23.8 0.1 5.7e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|389849265|ref|YP_006351501.1| - 0.039 14.1 0.2 0.98 9.5 0.1 2.0 2 0 0 2 2 2 0 Thioesterase domain UPF0227 PF05728.7 gi|389849265|ref|YP_006351501.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Esterase PF00756.15 gi|389849265|ref|YP_006351501.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative esterase AXE1 PF05448.7 gi|389849265|ref|YP_006351501.1| - 0.16 10.3 0.4 1.5 7.2 0.0 2.0 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) FKBP_C PF00254.23 gi|389849266|ref|YP_006351502.1| - 1.7e-24 85.6 0.1 2.2e-24 85.2 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NADH_oxidored PF08040.6 gi|389849267|ref|YP_006351503.1| - 0.035 13.7 0.3 6.3 6.4 0.0 2.5 2 0 0 2 2 2 0 MNLL subunit Laminin_II PF06009.7 gi|389849268|ref|YP_006351504.1| - 0.00063 19.5 0.5 0.002 17.8 0.3 1.8 1 0 0 1 1 1 1 Laminin Domain II FUSC PF04632.7 gi|389849268|ref|YP_006351504.1| - 7.8 4.7 15.0 0.45 8.8 4.7 2.0 2 0 0 2 2 2 0 Fusaric acid resistance protein family Usp PF00582.21 gi|389849269|ref|YP_006351505.1| - 7.3e-58 194.7 7.5 1.1e-28 100.2 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family AF2331-like PF14556.1 gi|389849269|ref|YP_006351505.1| - 0.11 12.8 0.1 0.23 11.8 0.1 1.4 1 0 0 1 1 1 0 AF2331-like CobA_CobO_BtuR PF02572.10 gi|389849270|ref|YP_006351506.1| - 3.5e-56 189.5 0.0 4.1e-56 189.2 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DUF3094 PF11293.3 gi|389849271|ref|YP_006351507.1| - 0.092 12.2 0.2 11 5.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) DUF2029 PF09594.5 gi|389849271|ref|YP_006351507.1| - 1.3 8.5 8.9 0.14 11.6 2.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2029) PhoU PF01895.14 gi|389849273|ref|YP_006351509.1| - 1.3e-14 54.3 2.9 3.1e-08 33.9 0.2 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|389849273|ref|YP_006351509.1| - 0.00061 19.4 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Saccharop_dh_N PF04455.7 gi|389849273|ref|YP_006351509.1| - 0.1 12.7 0.6 4.6 7.4 0.0 3.0 2 1 1 3 3 3 0 LOR/SDH bifunctional enzyme conserved region HAMP PF00672.20 gi|389849273|ref|YP_006351509.1| - 0.2 11.8 4.7 1.3 9.2 0.3 3.6 4 1 1 5 5 5 0 HAMP domain ABC_tran PF00005.22 gi|389849274|ref|YP_006351510.1| - 7.9e-31 107.1 0.0 1.4e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389849274|ref|YP_006351510.1| - 1.2e-14 55.0 0.0 1.9e-11 44.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389849274|ref|YP_006351510.1| - 8.9e-08 31.6 0.4 1.6e-05 24.2 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389849274|ref|YP_006351510.1| - 4.2e-05 23.6 0.0 0.00024 21.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389849274|ref|YP_006351510.1| - 6.6e-05 22.9 1.5 0.0056 16.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|389849274|ref|YP_006351510.1| - 0.00016 21.0 0.0 0.00041 19.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|389849274|ref|YP_006351510.1| - 0.00028 20.0 0.0 0.41 9.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|389849274|ref|YP_006351510.1| - 0.00092 18.4 0.0 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|389849274|ref|YP_006351510.1| - 0.0051 17.1 0.0 0.0092 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389849274|ref|YP_006351510.1| - 0.0059 16.3 0.0 1.2 8.9 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain DeoRC PF00455.17 gi|389849274|ref|YP_006351510.1| - 0.0076 15.9 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_25 PF13481.1 gi|389849274|ref|YP_006351510.1| - 0.011 15.1 0.0 0.041 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|389849274|ref|YP_006351510.1| - 0.018 14.9 0.0 0.048 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|389849274|ref|YP_006351510.1| - 0.021 13.5 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|389849274|ref|YP_006351510.1| - 0.021 14.2 0.1 0.054 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|389849274|ref|YP_006351510.1| - 0.025 14.0 0.1 0.092 12.1 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|389849274|ref|YP_006351510.1| - 0.032 15.0 0.8 0.14 12.9 0.5 2.3 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|389849274|ref|YP_006351510.1| - 0.052 12.1 0.0 3.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.1 gi|389849274|ref|YP_006351510.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|389849274|ref|YP_006351510.1| - 0.077 11.6 0.0 0.56 8.7 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein NYN_YacP PF05991.6 gi|389849274|ref|YP_006351510.1| - 0.089 12.5 0.1 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 YacP-like NYN domain AAA PF00004.24 gi|389849274|ref|YP_006351510.1| - 0.13 12.4 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.17 gi|389849275|ref|YP_006351511.1| - 6.7e-24 84.4 11.5 6.7e-24 84.4 8.0 4.5 1 1 3 5 5 5 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389849276|ref|YP_006351512.1| - 4.4e-20 71.9 10.9 4.4e-20 71.9 7.6 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TM140 PF14985.1 gi|389849276|ref|YP_006351512.1| - 0.16 11.6 3.5 0.61 9.7 2.4 2.0 1 0 0 1 1 1 0 TM140 protein family PBP_like_2 PF12849.2 gi|389849277|ref|YP_006351513.1| - 9.7e-30 103.9 5.9 1.6e-29 103.2 4.1 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|389849277|ref|YP_006351513.1| - 6.1e-15 54.6 0.1 1.1e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|389849277|ref|YP_006351513.1| - 0.021 14.7 0.4 0.021 14.7 0.3 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Tropomyosin PF00261.15 gi|389849278|ref|YP_006351514.1| - 4e-05 22.8 3.8 0.00025 20.2 0.2 2.4 2 1 0 2 2 2 1 Tropomyosin Reo_sigmaC PF04582.7 gi|389849278|ref|YP_006351514.1| - 4.5e-05 22.7 5.8 0.0012 18.1 2.1 2.2 1 1 1 2 2 2 1 Reovirus sigma C capsid protein DUF869 PF05911.6 gi|389849278|ref|YP_006351514.1| - 0.00033 19.0 0.5 0.0004 18.7 0.4 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) FlaC_arch PF05377.6 gi|389849278|ref|YP_006351514.1| - 0.0013 18.5 0.3 4.6 7.2 0.0 3.7 4 0 0 4 4 4 1 Flagella accessory protein C (FlaC) NPV_P10 PF05531.7 gi|389849278|ref|YP_006351514.1| - 0.003 17.7 11.0 3.9 7.7 0.9 4.6 2 1 3 5 5 4 1 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|389849278|ref|YP_006351514.1| - 0.0051 16.5 5.3 0.15 11.7 0.4 3.3 1 1 2 3 3 3 1 Laminin Domain II HSBP1 PF06825.7 gi|389849278|ref|YP_006351514.1| - 0.0094 15.5 2.6 11 5.7 0.2 4.1 3 1 0 3 3 3 0 Heat shock factor binding protein 1 CCDC155 PF14662.1 gi|389849278|ref|YP_006351514.1| - 0.013 15.1 0.7 2.7 7.5 0.0 2.8 3 0 0 3 3 3 0 Coiled-coil region of CCDC155 Baculo_PEP_C PF04513.7 gi|389849278|ref|YP_006351514.1| - 0.015 15.0 4.7 1.5 8.6 0.3 3.2 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus MtrG PF04210.8 gi|389849278|ref|YP_006351514.1| - 0.04 13.5 5.4 5.8 6.6 0.1 3.9 4 0 0 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G ApoC-I PF04691.7 gi|389849278|ref|YP_006351514.1| - 0.041 13.5 0.1 3.7 7.3 0.0 2.6 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) PLU-1 PF08429.6 gi|389849278|ref|YP_006351514.1| - 0.045 12.6 1.3 0.21 10.4 0.1 2.1 2 0 0 2 2 2 0 PLU-1-like protein DUF3247 PF11607.3 gi|389849278|ref|YP_006351514.1| - 0.064 13.5 3.8 2.4 8.4 0.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3247) UPF0184 PF03670.8 gi|389849278|ref|YP_006351514.1| - 0.1 12.8 9.9 7.8 6.7 0.0 3.8 3 1 1 4 4 3 0 Uncharacterised protein family (UPF0184) DUF1664 PF07889.7 gi|389849278|ref|YP_006351514.1| - 0.1 12.3 4.0 20 4.9 0.1 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) EzrA PF06160.7 gi|389849278|ref|YP_006351514.1| - 0.11 10.6 1.5 4.9 5.2 0.2 2.5 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.2 gi|389849278|ref|YP_006351514.1| - 0.11 12.3 4.7 0.67 9.8 1.6 2.9 2 1 1 3 3 3 0 Tropomyosin like DUF4164 PF13747.1 gi|389849278|ref|YP_006351514.1| - 0.13 12.3 9.0 0.32 11.1 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) AAA_13 PF13166.1 gi|389849278|ref|YP_006351514.1| - 0.15 10.5 0.3 0.24 9.8 0.2 1.3 1 0 0 1 1 1 0 AAA domain GPW_gp25 PF04965.9 gi|389849278|ref|YP_006351514.1| - 0.21 11.1 2.1 5.6 6.5 0.2 2.9 2 1 0 2 2 2 0 Gene 25-like lysozyme IncA PF04156.9 gi|389849278|ref|YP_006351514.1| - 0.26 10.8 4.4 22 4.5 3.0 2.8 1 1 0 1 1 1 0 IncA protein Adeno_PIX PF03955.9 gi|389849278|ref|YP_006351514.1| - 0.37 11.3 5.4 16 6.0 0.0 3.2 3 1 0 3 3 3 0 Adenovirus hexon-associated protein (IX) SNARE PF05739.14 gi|389849278|ref|YP_006351514.1| - 0.47 10.1 3.0 12 5.6 0.1 3.8 4 0 0 4 4 3 0 SNARE domain CorA PF01544.13 gi|389849278|ref|YP_006351514.1| - 0.52 9.2 7.3 2.2 7.2 3.1 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Syntaxin-6_N PF09177.6 gi|389849278|ref|YP_006351514.1| - 0.58 10.5 6.7 0.76 10.2 0.4 3.4 2 2 1 3 3 3 0 Syntaxin 6, N-terminal SlyX PF04102.7 gi|389849278|ref|YP_006351514.1| - 0.62 10.4 3.6 36 4.8 0.1 3.4 3 1 0 3 3 3 0 SlyX DUF2937 PF11157.3 gi|389849278|ref|YP_006351514.1| - 0.72 9.1 4.7 5.8 6.2 0.0 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF2937) Phasin PF05597.6 gi|389849278|ref|YP_006351514.1| - 1.7 8.4 5.0 17 5.2 0.1 3.5 3 1 0 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PMEI PF04043.10 gi|389849278|ref|YP_006351514.1| - 1.7 8.5 10.9 1.5 8.6 1.1 2.7 1 1 2 3 3 3 0 Plant invertase/pectin methylesterase inhibitor DUF1876 PF08962.6 gi|389849278|ref|YP_006351514.1| - 6.1 6.7 11.3 6.4 6.6 1.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1876) Sod_Fe_C PF02777.13 gi|389849279|ref|YP_006351515.1| - 4.9e-36 122.7 0.1 7.9e-36 122.1 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|389849279|ref|YP_006351515.1| - 8.2e-32 109.3 1.3 1.3e-31 108.6 0.9 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain TrmB PF01978.14 gi|389849280|ref|YP_006351516.1| - 0.00027 20.5 0.0 0.00056 19.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389849280|ref|YP_006351516.1| - 0.00063 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|389849280|ref|YP_006351516.1| - 0.0019 18.2 0.0 0.0044 17.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|389849280|ref|YP_006351516.1| - 0.0031 17.8 0.1 0.0065 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389849280|ref|YP_006351516.1| - 0.0053 16.5 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389849280|ref|YP_006351516.1| - 0.0094 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|389849280|ref|YP_006351516.1| - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|389849280|ref|YP_006351516.1| - 0.051 13.4 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|389849280|ref|YP_006351516.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|389849280|ref|YP_006351516.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UCR_Fe-S_N PF10399.4 gi|389849281|ref|YP_006351517.1| - 1.3 8.2 3.5 1 8.5 0.3 2.4 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BACON PF13004.2 gi|389849282|ref|YP_006351518.1| - 0.0038 17.4 2.0 0.015 15.4 0.4 2.5 1 1 1 2 2 2 1 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal RskA PF10099.4 gi|389849282|ref|YP_006351518.1| - 1.8 8.2 4.9 4.9 6.8 0.7 2.2 2 0 0 2 2 2 0 Anti-sigma-K factor rskA MarR_2 PF12802.2 gi|389849283|ref|YP_006351519.1| - 3e-09 36.3 0.1 5.6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389849283|ref|YP_006351519.1| - 1.1e-07 31.4 0.2 2.1e-07 30.5 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389849283|ref|YP_006351519.1| - 1.8e-07 30.7 0.1 3.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849283|ref|YP_006351519.1| - 7.1e-07 28.5 0.1 1.1e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|389849283|ref|YP_006351519.1| - 1.4e-05 25.3 0.2 3.6e-05 24.0 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|389849283|ref|YP_006351519.1| - 2.1e-05 24.0 0.1 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|389849283|ref|YP_006351519.1| - 2.5e-05 23.7 0.7 6.5e-05 22.3 0.1 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|389849283|ref|YP_006351519.1| - 3.6e-05 23.3 0.0 5.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|389849283|ref|YP_006351519.1| - 0.00011 22.0 0.1 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.6 gi|389849283|ref|YP_006351519.1| - 0.00011 21.4 0.2 0.00025 20.2 0.0 1.6 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) GntR PF00392.16 gi|389849283|ref|YP_006351519.1| - 0.00032 20.0 0.3 0.00053 19.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RNA_pol_Rpc34 PF05158.7 gi|389849283|ref|YP_006351519.1| - 0.00095 18.4 0.1 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_20 PF12840.2 gi|389849283|ref|YP_006351519.1| - 0.0023 17.6 0.1 0.0039 16.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|389849283|ref|YP_006351519.1| - 0.0098 15.9 0.1 0.02 14.9 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor NUDIX PF00293.23 gi|389849283|ref|YP_006351519.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain HTH_Crp_2 PF13545.1 gi|389849283|ref|YP_006351519.1| - 0.011 15.5 0.1 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|389849283|ref|YP_006351519.1| - 0.012 15.2 0.2 0.025 14.2 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|389849283|ref|YP_006351519.1| - 0.012 15.1 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|389849283|ref|YP_006351519.1| - 0.024 14.6 0.1 0.066 13.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|389849283|ref|YP_006351519.1| - 0.031 13.7 0.7 0.064 12.7 0.4 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.1 gi|389849283|ref|YP_006351519.1| - 0.061 13.4 0.1 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix FUR PF01475.14 gi|389849283|ref|YP_006351519.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|389849283|ref|YP_006351519.1| - 0.07 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Voltage_CLC PF00654.15 gi|389849283|ref|YP_006351519.1| - 0.077 12.0 0.9 0.1 11.6 0.6 1.1 1 0 0 1 1 1 0 Voltage gated chloride channel Sulfolobus_pRN PF05584.6 gi|389849283|ref|YP_006351519.1| - 0.083 12.8 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Trep_Strep PF09605.5 gi|389849283|ref|YP_006351519.1| - 0.32 10.6 4.4 4.4 6.9 0.6 2.1 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF4097 PF13349.1 gi|389849284|ref|YP_006351520.1| - 0.0091 15.5 0.4 0.014 14.9 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4097) HlyD_3 PF13437.1 gi|389849284|ref|YP_006351520.1| - 0.011 16.0 4.2 0.66 10.3 0.2 2.6 1 1 1 2 2 2 0 HlyD family secretion protein PC_rep PF01851.17 gi|389849284|ref|YP_006351520.1| - 0.31 11.3 1.9 1.5 9.1 0.0 2.8 3 0 0 3 3 3 0 Proteasome/cyclosome repeat Lung_7-TM_R PF06814.8 gi|389849286|ref|YP_006351522.1| - 0.26 10.1 3.9 0.091 11.7 0.5 1.8 2 0 0 2 2 2 0 Lung seven transmembrane receptor DUF2384 PF09722.5 gi|389849287|ref|YP_006351523.1| - 0.064 13.1 0.1 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Multi_Drug_Res PF00893.14 gi|389849288|ref|YP_006351524.1| - 5.5e-26 90.8 2.5 7.2e-26 90.4 1.7 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|389849288|ref|YP_006351524.1| - 7.5e-06 26.1 6.4 8.6e-06 25.9 4.4 1.1 1 0 0 1 1 1 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|389849288|ref|YP_006351524.1| - 0.0083 15.7 2.6 0.009 15.6 1.8 1.5 1 1 0 1 1 1 1 Triose-phosphate Transporter family EamA PF00892.15 gi|389849288|ref|YP_006351524.1| - 0.094 12.7 6.5 0.14 12.1 4.5 1.5 1 1 0 1 1 1 0 EamA-like transporter family DUF981 PF06168.6 gi|389849288|ref|YP_006351524.1| - 0.16 11.7 5.7 0.22 11.3 4.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF981) TrmB PF01978.14 gi|389849289|ref|YP_006351525.1| - 8e-19 67.1 0.1 1.6e-18 66.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|389849289|ref|YP_006351525.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|389849289|ref|YP_006351525.1| - 0.065 13.0 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family z-alpha PF02295.12 gi|389849289|ref|YP_006351525.1| - 0.076 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain adh_short PF00106.20 gi|389849290|ref|YP_006351526.1| - 1.1e-45 155.5 7.3 1.7e-45 154.9 5.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389849290|ref|YP_006351526.1| - 5.1e-30 105.0 0.4 6.2e-30 104.7 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389849290|ref|YP_006351526.1| - 4.7e-22 78.5 3.4 7e-22 77.9 2.3 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389849290|ref|YP_006351526.1| - 4.3e-06 26.3 0.9 7.7e-06 25.4 0.6 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389849290|ref|YP_006351526.1| - 4.5e-06 26.7 4.8 8.7e-06 25.8 3.4 1.6 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|389849290|ref|YP_006351526.1| - 0.0066 15.3 0.0 0.0084 15.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|389849290|ref|YP_006351526.1| - 0.013 14.5 0.2 0.017 14.1 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|389849290|ref|YP_006351526.1| - 0.014 14.6 1.5 0.017 14.3 0.5 1.4 2 0 0 2 2 2 0 NmrA-like family THF_DHG_CYH_C PF02882.14 gi|389849290|ref|YP_006351526.1| - 0.023 13.7 0.3 0.067 12.2 0.0 1.9 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.13 gi|389849290|ref|YP_006351526.1| - 0.023 14.6 0.5 0.054 13.4 0.3 1.6 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.12 gi|389849290|ref|YP_006351526.1| - 0.032 14.6 0.3 0.082 13.3 0.2 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|389849290|ref|YP_006351526.1| - 0.035 13.2 0.2 0.087 11.9 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|389849290|ref|YP_006351526.1| - 0.074 13.1 3.0 2.9 8.0 0.1 2.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|389849290|ref|YP_006351526.1| - 0.078 12.6 0.4 0.19 11.3 0.2 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|389849290|ref|YP_006351526.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Acyl_transf_1 PF00698.16 gi|389849291|ref|YP_006351527.1| - 2.3e-38 132.3 1.6 2.8e-38 132.0 1.1 1.0 1 0 0 1 1 1 1 Acyl transferase domain Abhydrolase_5 PF12695.2 gi|389849291|ref|YP_006351527.1| - 0.00059 19.6 0.3 0.0011 18.7 0.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Glyco_hydro_25 PF01183.15 gi|389849291|ref|YP_006351527.1| - 0.059 13.1 0.0 0.089 12.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 25 DUF2974 PF11187.3 gi|389849291|ref|YP_006351527.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) ACPS PF01648.15 gi|389849292|ref|YP_006351528.1| - 2.6e-15 56.2 0.0 3.4e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily ketoacyl-synt PF00109.21 gi|389849293|ref|YP_006351529.1| - 9.5e-52 175.9 7.3 9.5e-52 175.9 5.0 1.9 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|389849293|ref|YP_006351529.1| - 1.8e-30 105.2 3.1 4.4e-30 103.9 1.6 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.18 gi|389849293|ref|YP_006351529.1| - 5.3e-05 22.3 0.1 0.00011 21.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain PP-binding PF00550.20 gi|389849294|ref|YP_006351530.1| - 1.4e-12 47.6 0.9 1.6e-12 47.4 0.7 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.1 gi|389849294|ref|YP_006351530.1| - 0.038 14.0 0.6 0.056 13.4 0.2 1.4 1 1 0 1 1 1 0 Acyl-carrier Ribosomal_L50 PF10501.4 gi|389849294|ref|YP_006351530.1| - 0.066 13.1 0.0 0.071 13.0 0.0 1.3 1 1 0 1 1 1 0 Ribosomal subunit 39S ADH_zinc_N PF00107.21 gi|389849295|ref|YP_006351531.1| - 3.6e-32 110.6 1.1 6.5e-32 109.8 0.8 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|389849295|ref|YP_006351531.1| - 4.6e-21 76.0 1.6 1e-20 74.8 1.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389849295|ref|YP_006351531.1| - 1.9e-09 37.2 0.0 4.6e-09 36.0 0.0 1.8 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|389849295|ref|YP_006351531.1| - 0.041 13.8 3.7 0.067 13.1 2.6 1.3 1 0 0 1 1 1 0 NADH(P)-binding AurF PF11583.3 gi|389849296|ref|YP_006351532.1| - 0.0014 17.5 1.4 0.027 13.4 0.3 2.2 2 0 0 2 2 2 1 P-aminobenzoate N-oxygenase AurF PaaB PF06243.6 gi|389849296|ref|YP_006351532.1| - 0.0064 16.6 0.4 0.012 15.7 0.3 1.5 1 0 0 1 1 1 1 Phenylacetic acid degradation B Ribonuc_red_sm PF00268.16 gi|389849296|ref|YP_006351532.1| - 0.032 13.2 0.0 0.051 12.5 0.0 1.6 1 1 0 1 1 1 0 Ribonucleotide reductase, small chain DUF2543 PF10820.3 gi|389849296|ref|YP_006351532.1| - 0.042 13.8 0.5 0.13 12.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2543) DUF77 PF01910.12 gi|389849297|ref|YP_006351533.1| - 7.2e-21 73.6 0.1 8.2e-21 73.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Ykof PF07615.6 gi|389849297|ref|YP_006351533.1| - 0.04 14.0 0.1 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 YKOF-related Family DUF3138 PF11336.3 gi|389849297|ref|YP_006351533.1| - 0.075 11.1 0.3 0.078 11.1 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Response_reg PF00072.19 gi|389849298|ref|YP_006351534.1| - 8.2e-17 61.2 0.0 1.8e-16 60.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|389849298|ref|YP_006351534.1| - 2.9e-09 37.5 0.7 5.5e-08 33.4 0.5 2.2 1 1 0 1 1 1 1 GAF domain GAF PF01590.21 gi|389849298|ref|YP_006351534.1| - 1.3e-07 31.9 0.0 1.9e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|389849298|ref|YP_006351534.1| - 1.8e-05 24.8 0.1 3.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain AAA_31 PF13614.1 gi|389849298|ref|YP_006351534.1| - 0.036 13.9 0.1 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Abhydrolase_1 PF00561.15 gi|389849299|ref|YP_006351535.1| - 2.7e-15 56.5 0.0 4.8e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|389849299|ref|YP_006351535.1| - 3.5e-13 49.3 0.1 6.6e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_6 PF12697.2 gi|389849299|ref|YP_006351535.1| - 3.5e-11 43.4 0.0 6.9e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389849299|ref|YP_006351535.1| - 1.3e-07 31.4 0.0 1.3e-06 28.2 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|389849299|ref|YP_006351535.1| - 1e-05 24.0 0.0 0.00079 17.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.13 gi|389849299|ref|YP_006351535.1| - 2e-05 23.9 0.0 0.0022 17.3 0.0 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family HHH_5 PF14520.1 gi|389849299|ref|YP_006351535.1| - 5.4e-05 23.2 0.1 0.00014 21.9 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain PHB_depo_C PF06850.6 gi|389849299|ref|YP_006351535.1| - 0.00055 19.2 0.0 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF4332 PF14229.1 gi|389849299|ref|YP_006351535.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) FSH1 PF03959.8 gi|389849299|ref|YP_006351535.1| - 0.0015 17.9 0.0 0.011 15.2 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Cdd1 PF11731.3 gi|389849299|ref|YP_006351535.1| - 0.013 15.3 0.0 0.045 13.6 0.0 1.9 2 0 0 2 2 2 0 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|389849299|ref|YP_006351535.1| - 0.021 14.3 0.0 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF2048 PF09752.4 gi|389849299|ref|YP_006351535.1| - 0.034 13.0 0.1 0.064 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) TfoX_C PF04994.8 gi|389849299|ref|YP_006351535.1| - 0.15 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain Usp PF00582.21 gi|389849301|ref|YP_006351537.1| - 1.7e-21 76.8 1.6 1.9e-21 76.7 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|389849301|ref|YP_006351537.1| - 0.099 11.9 0.8 0.15 11.3 0.4 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CTP_transf_2 PF01467.21 gi|389849302|ref|YP_006351538.1| - 8.8e-09 35.6 0.1 1.9e-08 34.5 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|389849302|ref|YP_006351538.1| - 0.0054 16.3 0.1 0.0086 15.7 0.1 1.4 1 0 0 1 1 1 1 FAD synthetase CBS PF00571.23 gi|389849303|ref|YP_006351539.1| - 2.9e-22 78.1 0.9 6.6e-12 45.0 0.1 2.5 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.14 gi|389849303|ref|YP_006351539.1| - 2.6e-20 72.0 0.0 4.5e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389849303|ref|YP_006351539.1| - 4.3e-06 26.5 0.0 1.3e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|389849303|ref|YP_006351539.1| - 0.0022 18.4 0.0 0.004 17.5 0.0 1.4 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|389849303|ref|YP_006351539.1| - 0.006 16.6 0.1 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Thioesterase superfamily Ribosomal_L18_c PF14204.1 gi|389849303|ref|YP_006351539.1| - 0.11 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region Copper-bind PF00127.15 gi|389849305|ref|YP_006351541.1| - 3e-08 33.7 0.0 4.2e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389849305|ref|YP_006351541.1| - 2e-05 24.4 0.0 6.3e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.10 gi|389849305|ref|YP_006351541.1| - 0.0025 17.5 0.1 0.0042 16.8 0.1 1.5 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|389849305|ref|YP_006351541.1| - 0.011 15.1 0.1 0.032 13.7 0.1 1.9 1 1 0 1 1 1 0 Multicopper oxidase SoxE PF06525.6 gi|389849305|ref|YP_006351541.1| - 0.058 12.6 0.7 0.17 11.1 0.5 2.1 1 1 0 1 1 1 0 Sulfocyanin (SoxE) TAT_signal PF10518.4 gi|389849305|ref|YP_006351541.1| - 0.14 12.2 0.1 0.28 11.3 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TALPID3 PF15324.1 gi|389849305|ref|YP_006351541.1| - 1.2 6.3 4.8 1.3 6.2 3.4 1.0 1 0 0 1 1 1 0 Hedgehog signalling target Herpes_TK_C PF08465.5 gi|389849306|ref|YP_006351542.1| - 0.081 12.4 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 Thymidine kinase from Herpesvirus C-terminal HxlR PF01638.12 gi|389849307|ref|YP_006351543.1| - 7.7e-27 92.7 0.0 9.4e-27 92.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|389849307|ref|YP_006351543.1| - 0.0015 18.2 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|389849307|ref|YP_006351543.1| - 0.048 13.4 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|389849307|ref|YP_006351543.1| - 0.049 13.0 0.1 0.074 12.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|389849307|ref|YP_006351543.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain PAS_9 PF13426.1 gi|389849308|ref|YP_006351544.1| - 9.8e-43 144.7 0.0 3.5e-18 65.8 0.0 4.2 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|389849308|ref|YP_006351544.1| - 2.3e-27 95.0 0.0 5.2e-10 39.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|389849308|ref|YP_006351544.1| - 3.9e-24 84.8 0.8 1e-08 35.2 0.0 4.3 3 1 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|389849308|ref|YP_006351544.1| - 2.2e-22 78.4 0.1 6.3e-22 76.8 0.1 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|389849308|ref|YP_006351544.1| - 5.6e-21 73.6 0.0 8.9e-08 31.7 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|389849308|ref|YP_006351544.1| - 1.4e-16 60.3 0.0 9.3e-06 25.6 0.0 4.8 3 1 1 4 4 4 3 PAS fold GAF_3 PF13492.1 gi|389849308|ref|YP_006351544.1| - 2.5e-14 53.4 1.0 2.6e-08 34.0 0.1 2.7 2 0 0 2 2 2 2 GAF domain GAF_2 PF13185.1 gi|389849308|ref|YP_006351544.1| - 1.8e-13 51.2 5.0 1.1e-07 32.4 0.2 2.8 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.2 gi|389849308|ref|YP_006351544.1| - 0.0018 18.2 0.0 0.37 10.8 0.0 3.9 3 0 0 3 3 3 1 PAS fold Sigma70_r4_2 PF08281.7 gi|389849308|ref|YP_006351544.1| - 0.0022 17.4 0.6 0.006 16.0 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389849308|ref|YP_006351544.1| - 0.015 14.5 0.0 0.044 13.0 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 DUF134 PF02001.11 gi|389849308|ref|YP_006351544.1| - 0.017 14.9 0.0 0.048 13.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 DUF3933 PF13069.1 gi|389849308|ref|YP_006351544.1| - 0.065 12.9 0.2 0.21 11.3 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3933) HTH_17 PF12728.2 gi|389849308|ref|YP_006351544.1| - 0.1 12.8 0.0 1.4 9.1 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|389849309|ref|YP_006351545.1| - 2.9e-05 23.6 0.0 4.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|389849309|ref|YP_006351545.1| - 6.2e-05 22.5 0.2 0.00012 21.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|389849309|ref|YP_006351545.1| - 7.2e-05 22.5 0.1 0.00013 21.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389849309|ref|YP_006351545.1| - 0.00019 20.9 0.3 0.00034 20.1 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|389849309|ref|YP_006351545.1| - 0.00027 20.9 0.0 0.00049 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389849309|ref|YP_006351545.1| - 0.00058 19.3 0.1 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|389849309|ref|YP_006351545.1| - 0.00065 19.0 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|389849309|ref|YP_006351545.1| - 0.0007 19.2 0.2 0.002 17.7 0.1 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|389849309|ref|YP_006351545.1| - 0.0015 18.8 0.1 0.0029 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|389849309|ref|YP_006351545.1| - 0.0018 17.9 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|389849309|ref|YP_006351545.1| - 0.0034 16.7 0.2 0.0055 16.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389849309|ref|YP_006351545.1| - 0.0066 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|389849309|ref|YP_006351545.1| - 0.0069 16.1 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_28 PF13518.1 gi|389849309|ref|YP_006351545.1| - 0.016 15.1 0.2 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|389849309|ref|YP_006351545.1| - 0.019 15.0 0.1 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|389849309|ref|YP_006351545.1| - 0.074 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|389849309|ref|YP_006351545.1| - 0.083 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|389849309|ref|YP_006351545.1| - 0.087 12.3 0.1 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389849309|ref|YP_006351545.1| - 0.089 12.7 0.0 0.22 11.5 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF1724 PF08350.5 gi|389849309|ref|YP_006351545.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_Tnp_4 PF13613.1 gi|389849309|ref|YP_006351545.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease OstA PF03968.9 gi|389849311|ref|YP_006351547.1| - 0.0027 17.6 0.7 0.0081 16.1 0.5 1.9 1 1 0 1 1 1 1 OstA-like protein DUF2345 PF10106.4 gi|389849311|ref|YP_006351547.1| - 0.011 15.4 0.0 1.2 8.6 0.0 2.6 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2345) BACK PF07707.10 gi|389849311|ref|YP_006351547.1| - 2.3 8.0 16.3 2.8 7.8 0.9 3.3 1 1 2 3 3 3 0 BTB And C-terminal Kelch Cadherin-like PF12733.2 gi|389849311|ref|YP_006351547.1| - 2.4 8.5 7.8 18 5.6 0.6 3.0 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain DUF2218 PF09981.4 gi|389849312|ref|YP_006351548.1| - 4 7.6 7.7 65 3.8 0.0 4.6 4 2 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2218) HxlR PF01638.12 gi|389849314|ref|YP_006351550.1| - 3.3e-20 71.5 0.0 4.3e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|389849314|ref|YP_006351550.1| - 0.0066 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389849314|ref|YP_006351550.1| - 0.0094 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|389849314|ref|YP_006351550.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|389849314|ref|YP_006351550.1| - 0.044 13.5 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|389849314|ref|YP_006351550.1| - 0.045 13.5 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3656 PF12392.3 gi|389849315|ref|YP_006351551.1| - 0.16 11.9 0.9 1.2 9.2 0.1 2.5 1 1 2 3 3 3 0 Collagenase HxlR PF01638.12 gi|389849316|ref|YP_006351552.1| - 1.6e-28 98.1 0.1 2e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|389849316|ref|YP_006351552.1| - 0.0013 18.4 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|389849316|ref|YP_006351552.1| - 0.022 14.8 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389849316|ref|YP_006351552.1| - 0.059 13.1 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HtaA PF04213.8 gi|389849318|ref|YP_006351554.1| - 0.0035 17.6 3.6 0.4 10.8 0.2 2.7 1 1 2 3 3 3 2 Htaa Glyco_hydro_65C PF03633.10 gi|389849318|ref|YP_006351554.1| - 0.017 15.1 1.7 18 5.5 0.0 4.2 4 1 0 4 4 4 0 Glycosyl hydrolase family 65, C-terminal domain PepSY PF03413.14 gi|389849318|ref|YP_006351554.1| - 0.054 14.1 0.4 0.27 11.9 0.1 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF4097 PF13349.1 gi|389849320|ref|YP_006351556.1| - 0.58 9.6 26.6 0.42 10.1 0.4 5.5 2 2 3 6 6 6 0 Domain of unknown function (DUF4097) UL11 PF11094.3 gi|389849320|ref|YP_006351556.1| - 1.1 9.1 7.9 1.8 8.4 0.1 3.8 2 0 0 2 2 2 0 Membrane-associated tegument protein DUF2807 PF10988.3 gi|389849321|ref|YP_006351557.1| - 0.037 13.5 0.5 0.037 13.5 0.4 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF2807) Sarcoglycan_1 PF04790.8 gi|389849321|ref|YP_006351557.1| - 0.063 12.4 7.9 1.5 7.9 0.1 3.5 1 1 1 3 3 3 0 Sarcoglycan complex subunit protein HxlR PF01638.12 gi|389849322|ref|YP_006351558.1| - 2.7e-17 62.1 0.0 3e-17 62.0 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|389849322|ref|YP_006351558.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3116 PF11313.3 gi|389849322|ref|YP_006351558.1| - 0.093 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_CodY PF08222.6 gi|389849322|ref|YP_006351558.1| - 0.1 11.9 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF3060 PF11259.3 gi|389849322|ref|YP_006351558.1| - 0.11 12.0 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3060) PAS_9 PF13426.1 gi|389849323|ref|YP_006351559.1| - 1.5e-38 131.3 0.0 1.2e-13 51.3 0.0 4.0 4 0 0 4 4 3 3 PAS domain PAS PF00989.19 gi|389849323|ref|YP_006351559.1| - 1.3e-34 118.3 0.0 3.9e-11 42.7 0.0 4.2 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|389849323|ref|YP_006351559.1| - 2.5e-24 84.2 0.1 2.2e-08 33.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|389849323|ref|YP_006351559.1| - 1e-23 83.4 5.6 3.6e-08 33.4 0.0 4.8 4 1 0 4 4 3 3 PAS fold HTH_10 PF04967.7 gi|389849323|ref|YP_006351559.1| - 4.4e-22 77.3 0.5 5.9e-21 73.7 0.1 2.6 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.1 gi|389849323|ref|YP_006351559.1| - 1.9e-16 60.2 0.1 1.5e-08 34.8 0.0 2.8 2 0 0 2 2 2 2 GAF domain GAF_2 PF13185.1 gi|389849323|ref|YP_006351559.1| - 3.7e-16 59.9 1.8 1.4e-07 32.1 0.2 2.8 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.2 gi|389849323|ref|YP_006351559.1| - 2.4e-08 33.9 0.0 0.075 13.0 0.0 4.5 3 1 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|389849323|ref|YP_006351559.1| - 1.6e-07 31.3 0.0 0.3 11.2 0.0 4.5 3 1 1 4 4 4 2 PAS fold Sigma70_r4 PF04545.11 gi|389849323|ref|YP_006351559.1| - 1e-05 24.7 0.0 3e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|389849323|ref|YP_006351559.1| - 0.00011 21.6 0.7 0.0016 17.8 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 GAF PF01590.21 gi|389849323|ref|YP_006351559.1| - 0.0065 16.5 0.6 0.82 9.7 0.0 3.7 3 1 0 3 3 2 1 GAF domain HTH_22 PF13309.1 gi|389849323|ref|YP_006351559.1| - 0.0073 16.0 0.0 0.024 14.3 0.0 2.0 1 0 0 1 1 1 1 HTH domain GerE PF00196.14 gi|389849323|ref|YP_006351559.1| - 0.011 14.9 0.0 0.031 13.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF3369 PF11849.3 gi|389849323|ref|YP_006351559.1| - 0.016 15.1 0.0 0.53 10.2 0.0 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3369) HTH_38 PF13936.1 gi|389849323|ref|YP_006351559.1| - 0.037 13.5 3.0 0.048 13.2 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|389849323|ref|YP_006351559.1| - 0.039 13.7 0.1 0.12 12.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|389849323|ref|YP_006351559.1| - 0.045 13.4 0.2 0.22 11.2 0.2 2.2 1 0 0 1 1 1 0 Homeodomain-like domain UPF0122 PF04297.9 gi|389849323|ref|YP_006351559.1| - 0.088 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|389849323|ref|YP_006351559.1| - 0.094 12.3 0.0 0.3 10.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain MORN_2 PF07661.8 gi|389849324|ref|YP_006351560.1| - 1.1e-06 27.9 0.0 8.3 6.7 0.0 5.3 5 0 0 5 5 5 2 MORN repeat variant zf-RING_3 PF14369.1 gi|389849324|ref|YP_006351560.1| - 0.017 15.0 0.7 0.051 13.5 0.5 1.9 1 0 0 1 1 1 0 zinc-finger VirE3 PF06661.6 gi|389849324|ref|YP_006351560.1| - 0.49 9.4 9.3 3.1 6.8 0.8 2.2 1 1 1 2 2 2 0 VirE3 DUF3704 PF12488.3 gi|389849325|ref|YP_006351561.1| - 0.2 11.2 0.4 0.32 10.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3704) DUF543 PF04418.7 gi|389849326|ref|YP_006351562.1| - 7.4 6.6 11.0 9.8 6.2 0.3 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF543) CMD PF02627.15 gi|389849328|ref|YP_006351564.1| - 3.3e-11 42.8 0.2 2.1e-10 40.3 0.1 2.0 1 1 2 3 3 3 1 Carboxymuconolactone decarboxylase family TauE PF01925.14 gi|389849329|ref|YP_006351565.1| - 2.6e-33 115.4 23.8 3e-33 115.2 16.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE adh_short PF00106.20 gi|389849330|ref|YP_006351566.1| - 6.2e-23 81.5 3.3 8.2e-23 81.1 2.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389849330|ref|YP_006351566.1| - 2.1e-10 40.7 0.1 2.7e-10 40.4 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389849330|ref|YP_006351566.1| - 4.2e-07 29.8 3.3 1.1e-06 28.5 2.3 1.6 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|389849330|ref|YP_006351566.1| - 6.5e-05 22.6 0.3 0.0002 21.0 0.2 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|389849330|ref|YP_006351566.1| - 0.00022 20.7 0.2 0.00041 19.8 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389849330|ref|YP_006351566.1| - 0.063 13.2 1.7 0.13 12.2 1.2 1.4 1 0 0 1 1 1 0 NADH(P)-binding HHH_5 PF14520.1 gi|389849330|ref|YP_006351566.1| - 0.067 13.3 0.2 0.21 11.7 0.2 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain UDPG_MGDP_dh_N PF03721.9 gi|389849330|ref|YP_006351566.1| - 0.068 12.5 0.2 0.13 11.6 0.1 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.12 gi|389849330|ref|YP_006351566.1| - 0.25 10.1 2.3 0.35 9.7 1.6 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.13 gi|389849330|ref|YP_006351566.1| - 0.7 9.5 4.5 4.3 6.9 3.1 2.0 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patatin PF01734.17 gi|389849331|ref|YP_006351567.1| - 7.1e-17 62.0 0.3 6.9e-16 58.7 0.2 2.0 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.9 gi|389849332|ref|YP_006351568.1| - 4e-33 115.0 0.8 7.6e-33 114.0 0.5 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|389849332|ref|YP_006351568.1| - 6.4e-26 90.5 0.3 1.3e-25 89.5 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|389849332|ref|YP_006351568.1| - 7.3e-17 61.5 4.8 7.1e-15 55.1 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389849332|ref|YP_006351568.1| - 6e-09 36.2 0.1 2e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|389849332|ref|YP_006351568.1| - 8.4e-07 28.1 3.3 2.8e-06 26.4 2.3 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|389849332|ref|YP_006351568.1| - 2.1e-05 23.6 0.0 0.0069 15.3 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|389849332|ref|YP_006351568.1| - 0.00013 21.7 0.7 0.15 11.6 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|389849332|ref|YP_006351568.1| - 0.00016 20.8 2.6 0.00025 20.2 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389849332|ref|YP_006351568.1| - 0.0019 17.1 0.4 0.0019 17.1 0.2 2.2 2 1 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|389849332|ref|YP_006351568.1| - 0.0022 16.9 8.4 0.03 13.2 0.1 3.7 4 0 0 4 4 4 1 FAD dependent oxidoreductase XdhC_C PF13478.1 gi|389849332|ref|YP_006351568.1| - 0.015 15.5 0.3 0.47 10.7 0.0 3.0 3 0 0 3 3 3 0 XdhC Rossmann domain HI0933_like PF03486.9 gi|389849332|ref|YP_006351568.1| - 0.016 13.6 0.5 6.2 5.1 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein MarR_2 PF12802.2 gi|389849333|ref|YP_006351569.1| - 8.6e-10 38.1 0.0 2.3e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|389849333|ref|YP_006351569.1| - 9.3e-09 34.7 0.3 2.5e-08 33.3 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389849333|ref|YP_006351569.1| - 1.3e-07 31.2 0.0 1.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|389849333|ref|YP_006351569.1| - 1.9e-07 30.7 0.1 3.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|389849333|ref|YP_006351569.1| - 3.8e-06 26.5 0.0 6.8e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389849333|ref|YP_006351569.1| - 5.7e-06 25.6 0.0 1e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|389849333|ref|YP_006351569.1| - 3.5e-05 23.3 0.0 6.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|389849333|ref|YP_006351569.1| - 0.00075 19.7 0.0 0.0027 18.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|389849333|ref|YP_006351569.1| - 0.0019 17.9 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|389849333|ref|YP_006351569.1| - 0.0023 18.0 0.0 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389849333|ref|YP_006351569.1| - 0.033 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|389849333|ref|YP_006351569.1| - 0.039 13.9 0.1 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_31 PF13560.1 gi|389849333|ref|YP_006351569.1| - 0.059 13.5 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|389849333|ref|YP_006351569.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_CodY PF08222.6 gi|389849333|ref|YP_006351569.1| - 0.064 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_29 PF13551.1 gi|389849333|ref|YP_006351569.1| - 0.077 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|389849333|ref|YP_006351569.1| - 0.092 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.1 gi|389849333|ref|YP_006351569.1| - 0.095 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|389849333|ref|YP_006351569.1| - 0.1 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.2 gi|389849333|ref|YP_006351569.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|389849334|ref|YP_006351570.1| - 0.094 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain TAT_signal PF10518.4 gi|389849335|ref|YP_006351571.1| - 0.17 12.0 2.9 0.36 10.9 2.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MOSC PF03473.12 gi|389849336|ref|YP_006351572.1| - 1.5e-26 92.4 0.0 2.9e-26 91.4 0.0 1.5 2 0 0 2 2 2 1 MOSC domain 3-alpha PF03475.9 gi|389849336|ref|YP_006351572.1| - 6e-09 35.4 0.5 1.1e-08 34.6 0.4 1.4 1 0 0 1 1 1 1 3-alpha domain Beta_helix PF13229.1 gi|389849338|ref|YP_006351574.1| - 1.5e-29 102.8 40.6 2.7e-13 49.9 10.2 6.0 3 1 1 5 5 5 5 Right handed beta helix region NosD PF05048.8 gi|389849338|ref|YP_006351574.1| - 1.4e-17 63.6 24.2 5.4e-08 32.2 5.5 5.2 3 1 2 5 5 5 4 Periplasmic copper-binding protein (NosD) Peripla_BP_2 PF01497.13 gi|389849339|ref|YP_006351575.1| - 8.7e-16 57.7 0.0 1.4e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389849339|ref|YP_006351575.1| - 0.019 14.9 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M10 PF00413.19 gi|389849341|ref|YP_006351577.1| - 1.4e-05 24.8 3.1 0.00066 19.4 0.1 3.0 2 1 0 2 2 2 1 Matrixin Reprolysin_3 PF13582.1 gi|389849341|ref|YP_006351577.1| - 0.0024 18.3 0.0 0.0054 17.2 0.0 1.7 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|389849341|ref|YP_006351577.1| - 0.0065 16.5 0.1 0.015 15.3 0.0 1.7 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|389849341|ref|YP_006351577.1| - 0.0067 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|389849341|ref|YP_006351577.1| - 0.026 13.9 0.7 0.25 10.7 0.2 2.5 2 1 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M66 PF10462.4 gi|389849341|ref|YP_006351577.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 MacB_PCD PF12704.2 gi|389849342|ref|YP_006351578.1| - 2.6e-24 86.0 3.2 2.6e-24 86.0 2.2 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|389849342|ref|YP_006351578.1| - 2.5e-21 75.6 9.8 7.4e-21 74.1 4.5 2.2 2 0 0 2 2 2 1 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|389849342|ref|YP_006351578.1| - 0.021 13.5 0.5 0.021 13.5 0.3 2.0 2 1 0 3 3 3 0 Predicted permease YjgP/YjgQ family ABC_tran PF00005.22 gi|389849343|ref|YP_006351579.1| - 2.6e-39 134.6 0.0 7.4e-39 133.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|389849343|ref|YP_006351579.1| - 6.6e-10 39.4 0.0 0.00013 22.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389849343|ref|YP_006351579.1| - 4.7e-06 26.0 0.1 8.4e-06 25.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389849343|ref|YP_006351579.1| - 1.3e-05 24.5 0.1 0.1 11.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389849343|ref|YP_006351579.1| - 5.4e-05 23.3 0.2 0.00023 21.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389849343|ref|YP_006351579.1| - 7.1e-05 22.8 0.1 0.00014 21.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|389849343|ref|YP_006351579.1| - 7.3e-05 22.3 0.1 0.0024 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|389849343|ref|YP_006351579.1| - 9.1e-05 21.6 0.0 0.00016 20.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|389849343|ref|YP_006351579.1| - 0.00021 21.6 0.0 0.00039 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389849343|ref|YP_006351579.1| - 0.0012 19.6 0.1 0.0028 18.4 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389849343|ref|YP_006351579.1| - 0.0017 17.7 0.0 0.02 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|389849343|ref|YP_006351579.1| - 0.0022 17.1 0.0 0.45 9.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|389849343|ref|YP_006351579.1| - 0.0052 16.6 1.4 0.012 15.4 1.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|389849343|ref|YP_006351579.1| - 0.011 15.2 0.0 0.026 13.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|389849343|ref|YP_006351579.1| - 0.014 15.3 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|389849343|ref|YP_006351579.1| - 0.015 14.9 0.4 0.028 14.1 0.1 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|389849343|ref|YP_006351579.1| - 0.021 15.1 0.3 0.07 13.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|389849343|ref|YP_006351579.1| - 0.021 14.3 0.2 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|389849343|ref|YP_006351579.1| - 0.022 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|389849343|ref|YP_006351579.1| - 0.022 14.6 3.7 0.094 12.6 2.6 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|389849343|ref|YP_006351579.1| - 0.04 13.5 0.1 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|389849343|ref|YP_006351579.1| - 0.042 13.7 0.1 0.45 10.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|389849343|ref|YP_006351579.1| - 0.042 12.7 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|389849343|ref|YP_006351579.1| - 0.046 13.4 0.2 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|389849343|ref|YP_006351579.1| - 0.066 12.9 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase APS_kinase PF01583.15 gi|389849343|ref|YP_006351579.1| - 0.084 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MutS_V PF00488.16 gi|389849343|ref|YP_006351579.1| - 0.11 11.9 0.0 0.41 10.0 0.0 1.9 1 1 1 2 2 2 0 MutS domain V ABC_ATPase PF09818.4 gi|389849343|ref|YP_006351579.1| - 0.11 11.0 0.2 0.95 7.9 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|389849343|ref|YP_006351579.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.14 gi|389849343|ref|YP_006351579.1| - 0.33 10.3 2.3 0.43 10.0 0.2 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CARDB PF07705.6 gi|389849344|ref|YP_006351580.1| - 1.3e-07 31.5 9.4 0.00084 19.3 0.1 3.5 3 1 0 3 3 3 2 CARDB Transglut_C PF00927.17 gi|389849344|ref|YP_006351580.1| - 4.6e-07 29.8 0.1 0.00058 19.8 0.0 2.5 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|389849344|ref|YP_006351580.1| - 5.1e-05 23.2 1.2 0.47 10.5 0.2 3.1 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CBM_6 PF03422.10 gi|389849344|ref|YP_006351580.1| - 0.52 10.4 9.7 0.45 10.6 0.5 3.5 3 2 1 4 4 4 0 Carbohydrate binding module (family 6) CbiA PF01656.18 gi|389849346|ref|YP_006351582.1| - 3.1e-16 59.3 0.0 4.4e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|389849346|ref|YP_006351582.1| - 8.2e-09 34.9 0.1 0.0016 17.5 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|389849346|ref|YP_006351582.1| - 3.3e-06 27.1 0.1 4.6e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|389849346|ref|YP_006351582.1| - 0.002 17.5 0.0 0.037 13.3 0.0 2.1 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|389849346|ref|YP_006351582.1| - 0.016 14.2 0.0 0.035 13.1 0.0 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase DDE_Tnp_IS240 PF13610.1 gi|389849347|ref|YP_006351583.1| - 4.3e-15 55.9 0.0 5.9e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|389849347|ref|YP_006351583.1| - 3.8e-09 35.9 0.7 5.9e-09 35.3 0.5 1.3 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|389849347|ref|YP_006351583.1| - 0.038 13.8 0.1 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DUF4013 PF13197.1 gi|389849348|ref|YP_006351584.1| - 0.0011 18.3 29.0 0.0011 18.3 20.1 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) NIR_SIR PF01077.17 gi|389849349|ref|YP_006351585.1| - 6.1e-47 158.8 0.0 2.4e-33 114.7 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|389849349|ref|YP_006351585.1| - 7.6e-29 99.1 0.1 3.6e-13 48.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|389849349|ref|YP_006351585.1| - 0.13 12.1 0.1 2.4 8.0 0.0 2.4 2 0 0 2 2 2 0 DGC domain FrhB_FdhB_C PF04432.8 gi|389849350|ref|YP_006351586.1| - 4.6e-29 100.9 0.0 4.6e-29 100.9 0.0 1.9 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|389849350|ref|YP_006351586.1| - 6.2e-22 77.2 0.0 1.2e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|389849350|ref|YP_006351586.1| - 3.4e-09 36.4 5.8 3.4e-09 36.4 4.0 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389849350|ref|YP_006351586.1| - 7.5e-09 34.8 17.2 1.8e-06 27.2 2.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389849350|ref|YP_006351586.1| - 1.3e-07 31.7 7.8 1.3e-07 31.7 5.4 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389849350|ref|YP_006351586.1| - 1.5e-07 31.1 12.8 2.2e-07 30.5 6.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389849350|ref|YP_006351586.1| - 7.7e-06 26.1 9.6 7.7e-06 26.1 6.7 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|389849350|ref|YP_006351586.1| - 2.2e-05 24.6 6.2 0.011 16.1 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389849350|ref|YP_006351586.1| - 2.7e-05 23.8 4.0 2.7e-05 23.8 2.8 3.7 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389849350|ref|YP_006351586.1| - 7e-05 22.5 3.1 7e-05 22.5 2.2 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|389849350|ref|YP_006351586.1| - 0.00015 22.0 13.0 0.013 15.9 0.1 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389849350|ref|YP_006351586.1| - 0.00024 21.7 16.3 0.026 15.2 0.9 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|389849350|ref|YP_006351586.1| - 0.0036 17.8 9.2 2.7 8.6 6.4 3.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|389849350|ref|YP_006351586.1| - 0.0051 17.0 12.9 0.011 16.0 3.1 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain TonB_2 PF13103.1 gi|389849350|ref|YP_006351586.1| - 0.02 14.9 0.0 0.052 13.6 0.0 1.7 1 0 0 1 1 1 0 TonB C terminal Fer4_8 PF13183.1 gi|389849350|ref|YP_006351586.1| - 0.023 14.7 11.6 0.023 14.7 8.0 3.0 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|389849350|ref|YP_006351586.1| - 0.026 14.9 11.8 0.25 11.7 1.9 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain NUDIX PF00293.23 gi|389849351|ref|YP_006351587.1| - 5.4e-16 58.4 0.2 7e-16 58.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF1317 PF07026.6 gi|389849351|ref|YP_006351587.1| - 0.047 13.5 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1317) DoxX PF07681.7 gi|389849352|ref|YP_006351588.1| - 4.8e-12 46.1 11.6 4.8e-12 46.1 8.0 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|389849352|ref|YP_006351588.1| - 4.4e-05 23.3 0.5 0.00021 21.1 0.1 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.10 gi|389849352|ref|YP_006351588.1| - 0.00058 19.3 0.2 0.0011 18.4 0.1 1.5 1 1 0 1 1 1 1 SURF4 family DoxX_2 PF13564.1 gi|389849352|ref|YP_006351588.1| - 0.048 13.6 10.1 0.067 13.1 6.7 1.5 1 1 0 1 1 1 0 DoxX-like family Rab5ip PF07019.7 gi|389849352|ref|YP_006351588.1| - 0.11 12.6 2.0 0.12 12.5 0.2 1.9 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) DUF4064 PF13273.1 gi|389849352|ref|YP_006351588.1| - 0.21 11.7 3.4 0.28 11.2 1.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Neurensin PF14927.1 gi|389849352|ref|YP_006351588.1| - 1.2 8.5 4.6 3.5 6.9 2.9 2.2 1 1 0 1 1 1 0 Neurensin Abhydrolase_2 PF02230.11 gi|389849354|ref|YP_006351590.1| - 1.1e-20 74.0 0.0 6.1e-20 71.6 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.2 gi|389849354|ref|YP_006351590.1| - 1.5e-13 51.1 1.3 7e-10 39.1 0.4 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389849354|ref|YP_006351590.1| - 4.7e-13 49.1 0.0 5.8e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389849354|ref|YP_006351590.1| - 7.1e-05 22.1 0.0 0.0001 21.6 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|389849354|ref|YP_006351590.1| - 0.00024 20.7 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|389849354|ref|YP_006351590.1| - 0.021 14.4 0.0 0.069 12.7 0.0 1.8 1 1 1 2 2 2 0 alpha/beta hydrolase fold NUDIX-like PF09296.6 gi|389849354|ref|YP_006351590.1| - 0.035 14.4 0.0 0.52 10.6 0.0 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain Peptidase_S9 PF00326.16 gi|389849354|ref|YP_006351590.1| - 0.047 12.9 0.0 2.1 7.5 0.0 2.5 3 0 0 3 3 3 0 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|389849354|ref|YP_006351590.1| - 0.075 12.8 0.1 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Putative lysophospholipase FSH1 PF03959.8 gi|389849354|ref|YP_006351590.1| - 0.16 11.3 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Glyoxalase PF00903.20 gi|389849355|ref|YP_006351591.1| - 8e-31 106.6 0.8 5e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389849355|ref|YP_006351591.1| - 5.6e-12 46.2 0.4 1.9e-05 25.2 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|389849355|ref|YP_006351591.1| - 0.00065 19.6 0.1 2.2 8.3 0.0 2.9 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YcfA PF07927.7 gi|389849355|ref|YP_006351591.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 YcfA-like protein Glyoxalase PF00903.20 gi|389849356|ref|YP_006351592.1| - 4.1e-11 42.9 0.4 5.6e-11 42.5 0.3 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389849356|ref|YP_006351592.1| - 5.4e-07 29.6 0.0 9.6e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389849356|ref|YP_006351592.1| - 3.4e-05 24.3 0.0 6.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase-like domain HxlR PF01638.12 gi|389849357|ref|YP_006351593.1| - 6.6e-21 73.7 0.0 8.1e-21 73.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|389849357|ref|YP_006351593.1| - 4.3e-06 26.6 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|389849357|ref|YP_006351593.1| - 4.7e-06 26.8 0.1 7.3e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389849357|ref|YP_006351593.1| - 4.8e-05 22.9 0.1 7.6e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389849357|ref|YP_006351593.1| - 0.0023 17.5 0.1 0.0041 16.7 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|389849357|ref|YP_006351593.1| - 0.0029 17.3 0.1 0.0045 16.7 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|389849357|ref|YP_006351593.1| - 0.0091 15.6 0.1 0.017 14.8 0.1 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389849357|ref|YP_006351593.1| - 0.016 14.9 0.1 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|389849357|ref|YP_006351593.1| - 0.029 14.5 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389849357|ref|YP_006351593.1| - 0.046 13.3 0.1 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain CARD PF00619.16 gi|389849357|ref|YP_006351593.1| - 0.093 12.5 0.5 3.7 7.4 0.1 2.8 2 1 1 3 3 3 0 Caspase recruitment domain HTH_45 PF14947.1 gi|389849357|ref|YP_006351593.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.1 gi|389849357|ref|YP_006351593.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Rrf2 PF02082.15 gi|389849357|ref|YP_006351593.1| - 0.12 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_43 PF09904.4 gi|389849357|ref|YP_006351593.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Isochorismatase PF00857.15 gi|389849358|ref|YP_006351594.1| - 6.6e-25 88.0 0.0 1.1e-24 87.2 0.0 1.4 1 0 0 1 1 1 1 Isochorismatase family Isochorismatase PF00857.15 gi|389849359|ref|YP_006351595.1| - 7e-30 104.2 0.3 1.7e-29 103.0 0.2 1.6 1 1 0 1 1 1 1 Isochorismatase family Lipase_GDSL_2 PF13472.1 gi|389849359|ref|YP_006351595.1| - 0.045 13.8 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family