# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|389848880|ref|YP_006351116.1| - 5.9e-16 58.2 0.1 2.2e-15 56.4 0.1 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389848880|ref|YP_006351116.1| - 2.7e-13 50.3 0.0 8.8e-13 48.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848880|ref|YP_006351116.1| - 6.3e-11 43.0 3.7 2.3e-09 37.9 0.0 3.2 1 1 1 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|389848880|ref|YP_006351116.1| - 9.5e-06 25.6 0.0 3.7e-05 23.7 0.0 1.9 1 1 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|389848880|ref|YP_006351116.1| - 1.1e-05 25.9 0.0 3.2e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|389848880|ref|YP_006351116.1| - 5.5e-05 23.2 0.1 0.00017 21.6 0.1 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|389848880|ref|YP_006351116.1| - 0.00045 20.0 0.3 0.32 10.7 0.1 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase TniB PF05621.11 gi|389848880|ref|YP_006351116.1| - 0.00078 18.9 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_32 PF13654.6 gi|389848880|ref|YP_006351116.1| - 0.0011 17.9 0.3 0.82 8.4 0.0 2.7 3 0 0 3 3 3 2 AAA domain KAP_NTPase PF07693.14 gi|389848880|ref|YP_006351116.1| - 0.0015 17.9 0.6 0.26 10.5 0.0 3.0 2 1 1 3 3 3 1 KAP family P-loop domain DUF815 PF05673.13 gi|389848880|ref|YP_006351116.1| - 0.002 17.4 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF87 PF01935.17 gi|389848880|ref|YP_006351116.1| - 0.0074 16.4 0.5 1.9 8.5 0.0 3.2 3 0 0 3 3 3 1 Helicase HerA, central domain AAA_7 PF12775.7 gi|389848880|ref|YP_006351116.1| - 0.0086 15.6 0.0 0.089 12.3 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region NB-ARC PF00931.22 gi|389848880|ref|YP_006351116.1| - 0.011 15.0 0.0 0.023 13.9 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|389848880|ref|YP_006351116.1| - 0.014 15.2 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|389848880|ref|YP_006351116.1| - 0.021 13.9 0.0 0.054 12.5 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|389848880|ref|YP_006351116.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|389848880|ref|YP_006351116.1| - 0.023 15.1 0.0 0.061 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|389848880|ref|YP_006351116.1| - 0.027 15.0 0.1 0.1 13.2 0.0 2.1 3 0 0 3 3 1 0 AAA domain Zeta_toxin PF06414.12 gi|389848880|ref|YP_006351116.1| - 0.041 13.1 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|389848880|ref|YP_006351116.1| - 0.052 13.9 0.4 0.13 12.6 0.4 1.7 1 0 0 1 1 1 0 AAA C-terminal domain TrwB_AAD_bind PF10412.9 gi|389848880|ref|YP_006351116.1| - 0.061 12.2 0.0 0.16 10.8 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_2 PF07724.14 gi|389848880|ref|YP_006351116.1| - 0.066 13.3 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) TIP49_C PF17856.1 gi|389848880|ref|YP_006351116.1| - 0.067 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain RuvB_N PF05496.12 gi|389848880|ref|YP_006351116.1| - 0.068 12.9 0.1 0.33 10.7 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|389848880|ref|YP_006351116.1| - 0.069 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_lid_4 PF17864.1 gi|389848880|ref|YP_006351116.1| - 0.076 12.8 0.2 0.24 11.2 0.2 1.9 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_5 PF07728.14 gi|389848880|ref|YP_006351116.1| - 0.079 13.0 0.2 19 5.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|389848880|ref|YP_006351116.1| - 0.082 13.1 0.4 4.6 7.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|389848880|ref|YP_006351116.1| - 0.12 12.3 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|389848880|ref|YP_006351116.1| - 0.13 12.3 0.1 0.51 10.4 0.1 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase Nitroreductase PF00881.24 gi|389848881|ref|YP_006351117.1| - 2e-14 54.0 0.0 2.2e-12 47.3 0.0 2.5 2 1 0 2 2 2 2 Nitroreductase family BTRD1 PF17660.1 gi|389848881|ref|YP_006351117.1| - 0.059 13.2 0.1 3.4 7.6 0.0 2.7 2 0 0 2 2 2 0 Bacterial tandem repeat domain 1 Thiolase_N PF00108.23 gi|389848883|ref|YP_006351119.1| - 1e-58 198.7 0.0 1.5e-58 198.3 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848883|ref|YP_006351119.1| - 4.4e-08 32.8 0.4 1.5e-07 31.1 0.4 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|389848883|ref|YP_006351119.1| - 0.0021 18.1 0.7 3.6 7.6 0.0 3.5 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848883|ref|YP_006351119.1| - 0.051 13.1 2.0 1.1 8.8 0.2 2.6 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Acetyltransf_1 PF00583.25 gi|389848884|ref|YP_006351120.1| - 1.2e-19 70.6 0.2 1.7e-19 70.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848884|ref|YP_006351120.1| - 1.1e-15 57.7 0.0 1.3e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848884|ref|YP_006351120.1| - 1.8e-15 57.1 0.1 2.5e-15 56.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|389848884|ref|YP_006351120.1| - 8.7e-13 48.7 0.0 1.1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848884|ref|YP_006351120.1| - 6.8e-10 38.8 0.0 1.1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|389848884|ref|YP_006351120.1| - 3.3e-09 37.5 0.2 4e-09 37.3 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848884|ref|YP_006351120.1| - 4.5e-09 36.5 0.6 2.4e-08 34.1 0.6 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389848884|ref|YP_006351120.1| - 4.5e-05 23.6 0.0 6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|389848884|ref|YP_006351120.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|389848884|ref|YP_006351120.1| - 0.038 14.1 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4821 PF16092.5 gi|389848884|ref|YP_006351120.1| - 0.11 12.1 0.2 0.29 10.7 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4821) Na_Pi_cotrans PF02690.15 gi|389848885|ref|YP_006351121.1| - 3e-19 69.5 15.6 3.9e-11 43.2 2.4 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter RhodobacterPufX PF11511.8 gi|389848885|ref|YP_006351121.1| - 1.5 8.5 3.9 30 4.3 0.4 3.2 2 0 0 2 2 2 0 Intrinsic membrane protein PufX Usp PF00582.26 gi|389848886|ref|YP_006351122.1| - 2.7e-33 115.4 2.7 3.1e-33 115.3 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF5314 PF17241.2 gi|389848886|ref|YP_006351122.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5314) DUF4010 PF13194.6 gi|389848887|ref|YP_006351123.1| - 9.3e-69 231.3 21.1 9.3e-69 231.3 21.1 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) Na_Ca_ex PF01699.24 gi|389848888|ref|YP_006351124.1| - 1.1e-26 93.6 37.2 5.7e-19 68.6 11.0 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Usp PF00582.26 gi|389848889|ref|YP_006351125.1| - 1.7e-37 129.1 0.4 2e-37 128.9 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Dodecin PF07311.12 gi|389848889|ref|YP_006351125.1| - 0.023 14.9 0.3 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 Dodecin Apolipoprotein PF01442.18 gi|389848890|ref|YP_006351126.1| - 0.0017 18.2 0.8 0.002 18.0 0.8 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain ApoLp-III PF07464.11 gi|389848890|ref|YP_006351126.1| - 0.0035 17.5 0.5 0.0038 17.3 0.5 1.0 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) BMFP PF04380.13 gi|389848890|ref|YP_006351126.1| - 0.0063 17.0 0.9 0.0096 16.4 0.4 1.5 1 1 1 2 2 2 1 Membrane fusogenic activity ApoO PF09769.9 gi|389848890|ref|YP_006351126.1| - 0.01 15.8 0.1 0.01 15.8 0.1 1.0 1 0 0 1 1 1 0 Apolipoprotein O YtxH PF12732.7 gi|389848890|ref|YP_006351126.1| - 0.011 16.3 0.9 0.012 16.1 0.9 1.1 1 0 0 1 1 1 0 YtxH-like protein Con-6 PF10346.9 gi|389848890|ref|YP_006351126.1| - 0.015 15.3 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Conidiation protein 6 TBCA PF02970.16 gi|389848890|ref|YP_006351126.1| - 0.015 15.6 0.8 0.022 15.1 0.8 1.4 1 1 0 1 1 1 0 Tubulin binding cofactor A PilJ PF13675.6 gi|389848890|ref|YP_006351126.1| - 0.02 14.9 0.2 0.035 14.1 0.2 1.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term GPW_gp25 PF04965.14 gi|389848890|ref|YP_006351126.1| - 0.022 14.5 0.3 0.027 14.2 0.3 1.3 1 1 0 1 1 1 0 Gene 25-like lysozyme DUF3543 PF12063.8 gi|389848890|ref|YP_006351126.1| - 0.044 13.2 0.4 2.2 7.6 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3543) Tape_meas_lam_C PF09718.10 gi|389848890|ref|YP_006351126.1| - 0.045 13.9 0.0 0.053 13.7 0.0 1.2 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) PqqD PF05402.12 gi|389848890|ref|YP_006351126.1| - 0.064 13.6 0.6 0.092 13.1 0.6 1.3 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Ribosomal_S30AE PF02482.19 gi|389848890|ref|YP_006351126.1| - 0.077 13.8 0.7 0.12 13.2 0.6 1.3 1 1 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF1664 PF07889.12 gi|389848890|ref|YP_006351126.1| - 0.11 12.5 0.5 0.14 12.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) LPP PF04728.13 gi|389848890|ref|YP_006351126.1| - 0.12 12.8 1.7 0.18 12.2 1.5 1.5 1 1 1 2 2 2 0 Lipoprotein leucine-zipper BRI3BP PF14965.6 gi|389848890|ref|YP_006351126.1| - 0.21 11.1 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Negative regulator of p53/TP53 SNARE PF05739.19 gi|389848890|ref|YP_006351126.1| - 1.9 8.6 4.3 1.9 8.5 0.9 1.9 2 0 0 2 2 2 0 SNARE domain AP_endonuc_2 PF01261.24 gi|389848891|ref|YP_006351127.1| - 8.1e-31 107.1 0.3 1.1e-30 106.7 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribonuc_red_lgC PF02867.15 gi|389848892|ref|YP_006351128.1| - 2.9e-151 504.6 0.0 1.6e-108 363.5 0.0 2.2 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|389848892|ref|YP_006351128.1| - 3.9e-25 87.7 0.0 7.8e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Sod_Fe_N PF00081.22 gi|389848893|ref|YP_006351129.1| - 1.7e-28 98.9 0.3 1.7e-28 98.9 0.3 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|389848893|ref|YP_006351129.1| - 4.9e-26 90.9 0.0 6.9e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Thiolase_N PF00108.23 gi|389848894|ref|YP_006351130.1| - 1e-28 100.4 4.9 4.5e-27 95.1 4.9 2.2 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848894|ref|YP_006351130.1| - 1.4e-09 37.6 1.2 1.4e-09 37.6 1.2 2.7 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848894|ref|YP_006351130.1| - 6.1e-09 35.8 6.3 4.7e-06 26.4 3.6 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|389848894|ref|YP_006351130.1| - 0.0083 16.1 4.5 0.05 13.6 2.2 3.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Dodecin PF07311.12 gi|389848894|ref|YP_006351130.1| - 0.11 12.8 0.4 2.3 8.6 0.2 2.9 3 0 0 3 3 3 0 Dodecin OB_aCoA_assoc PF01796.17 gi|389848895|ref|YP_006351131.1| - 3.5e-14 52.5 0.0 4.4e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|389848895|ref|YP_006351131.1| - 1.1e-05 25.2 2.6 1.6e-05 24.6 2.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|389848895|ref|YP_006351131.1| - 0.00012 21.9 0.2 0.00015 21.5 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|389848895|ref|YP_006351131.1| - 0.016 14.7 0.7 0.63 9.6 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|389848895|ref|YP_006351131.1| - 0.03 14.3 1.6 0.56 10.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.7 gi|389848895|ref|YP_006351131.1| - 0.038 14.0 0.8 0.059 13.4 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1936 PF09151.10 gi|389848895|ref|YP_006351131.1| - 0.084 12.8 0.6 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) HypA PF01155.19 gi|389848895|ref|YP_006351131.1| - 0.091 12.8 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|389848895|ref|YP_006351131.1| - 0.1 12.8 1.0 0.5 10.6 1.0 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 gi|389848895|ref|YP_006351131.1| - 0.43 10.7 5.0 5.3 7.2 5.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|389848895|ref|YP_006351131.1| - 0.84 9.6 7.1 24 4.9 0.5 2.6 2 1 1 3 3 3 0 Nudix N-terminal HAD PF12710.7 gi|389848896|ref|YP_006351132.1| - 1e-23 84.7 0.1 1.2e-23 84.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848896|ref|YP_006351132.1| - 4.1e-13 50.1 2.8 1.2e-11 45.3 2.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|389848896|ref|YP_006351132.1| - 8.8e-09 35.5 0.1 8.4e-05 22.4 0.0 3.0 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389848896|ref|YP_006351132.1| - 8.2e-05 22.8 0.1 0.02 15.0 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase TF_AP-2 PF03299.14 gi|389848896|ref|YP_006351132.1| - 0.018 15.0 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcription factor AP-2 Hydrolase_6 PF13344.6 gi|389848896|ref|YP_006351132.1| - 0.021 14.9 0.0 0.13 12.4 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|389848896|ref|YP_006351132.1| - 0.14 11.6 0.0 0.28 10.5 0.0 1.5 2 0 0 2 2 2 0 Putative Phosphatase CBS PF00571.28 gi|389848897|ref|YP_006351133.1| - 7e-32 109.7 14.5 4.5e-10 39.8 0.4 4.3 4 0 0 4 4 4 4 CBS domain BDM PF10684.9 gi|389848897|ref|YP_006351133.1| - 0.18 12.2 0.6 1.4 9.3 0.1 2.2 2 0 0 2 2 2 0 Putative biofilm-dependent modulation protein Usp PF00582.26 gi|389848899|ref|YP_006351135.1| - 1.1e-65 220.5 12.9 1.5e-34 119.5 4.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF3197 PF11432.8 gi|389848899|ref|YP_006351135.1| - 0.00031 20.6 0.1 0.00077 19.3 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3197) Asparaginase_C PF17763.1 gi|389848899|ref|YP_006351135.1| - 0.00062 20.0 1.0 0.0035 17.6 0.1 2.4 1 1 1 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Lactamase_B_4 PF13691.6 gi|389848899|ref|YP_006351135.1| - 0.0021 17.7 0.0 0.6 9.8 0.0 2.6 2 0 0 2 2 2 2 tRNase Z endonuclease Peripla_BP_4 PF13407.6 gi|389848899|ref|YP_006351135.1| - 0.0053 16.4 6.2 0.12 11.9 2.8 2.6 2 1 1 3 3 3 2 Periplasmic binding protein domain AP_endonuc_2 PF01261.24 gi|389848899|ref|YP_006351135.1| - 0.011 15.2 8.1 3.5 7.0 3.8 3.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PucR PF07905.11 gi|389848899|ref|YP_006351135.1| - 0.02 15.2 0.1 1.9 8.8 0.0 2.6 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Bac_thur_toxin PF01338.18 gi|389848899|ref|YP_006351135.1| - 0.13 11.7 0.4 1.3 8.4 0.2 2.0 2 0 0 2 2 2 0 Bacillus thuringiensis toxin CoA_binding_2 PF13380.6 gi|389848899|ref|YP_006351135.1| - 0.29 11.6 5.5 3 8.4 0.0 3.2 3 1 0 3 3 3 0 CoA binding domain YukC PF10140.9 gi|389848901|ref|YP_006351137.1| - 0.016 14.1 0.0 0.016 14.1 0.0 1.0 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC Complex1_51K PF01512.17 gi|389848902|ref|YP_006351138.1| - 7.7e-21 74.5 0.0 1.2e-20 74.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|389848902|ref|YP_006351138.1| - 5.8e-05 23.0 0.2 0.00012 22.0 0.2 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|389848902|ref|YP_006351138.1| - 0.0086 15.9 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 SLBB domain DDE_Tnp_IS1595 PF12762.7 gi|389848903|ref|YP_006351139.1| - 2.9e-08 33.8 0.0 6.4e-08 32.8 0.0 1.5 2 0 0 2 2 2 1 ISXO2-like transposase domain HTH_38 PF13936.6 gi|389848903|ref|YP_006351139.1| - 0.0019 17.9 0.0 0.0041 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|389848903|ref|YP_006351139.1| - 0.053 13.4 0.9 0.14 12.1 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|389848903|ref|YP_006351139.1| - 0.066 13.0 0.8 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain eIF-5_eIF-2B PF01873.17 gi|389848903|ref|YP_006351139.1| - 0.068 13.1 0.0 0.74 9.7 0.1 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_29 PF13551.6 gi|389848903|ref|YP_006351139.1| - 0.19 11.8 0.1 0.19 11.8 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DNA_RNApol_7kD PF03604.13 gi|389848903|ref|YP_006351139.1| - 0.27 10.9 1.4 0.72 9.6 1.4 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|389848903|ref|YP_006351139.1| - 3 7.4 7.5 2.1 7.9 4.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain HD_4 PF13328.6 gi|389848904|ref|YP_006351140.1| - 6.5e-07 29.2 0.0 1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|389848904|ref|YP_006351140.1| - 0.0079 16.4 0.3 0.015 15.5 0.3 1.4 1 0 0 1 1 1 1 HD domain DUF3868 PF12984.7 gi|389848905|ref|YP_006351141.1| - 1.4e-05 24.9 11.4 0.38 10.6 0.0 7.1 4 3 4 8 8 8 2 Domain of unknown function, B. Theta Gene description (DUF3868) DUF2807 PF10988.8 gi|389848905|ref|YP_006351141.1| - 6.2 6.6 13.3 0.21 11.4 1.6 3.6 2 2 1 3 3 3 0 Putative auto-transporter adhesin, head GIN domain SBP_bac_1 PF01547.25 gi|389848906|ref|YP_006351142.1| - 4e-21 76.3 2.9 1.5e-20 74.4 2.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|389848906|ref|YP_006351142.1| - 6.7e-17 62.2 0.0 8.9e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HATPase_c PF02518.26 gi|389848907|ref|YP_006351143.1| - 2.1e-26 92.6 0.1 5.1e-26 91.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|389848907|ref|YP_006351143.1| - 6.5e-14 52.0 0.0 2.1e-12 47.1 0.0 2.9 3 0 0 3 3 2 1 PAS fold HisKA PF00512.25 gi|389848907|ref|YP_006351143.1| - 1.2e-10 41.2 0.1 6.1e-10 39.0 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|389848907|ref|YP_006351143.1| - 4.4e-10 39.6 0.0 2.5e-09 37.1 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|389848907|ref|YP_006351143.1| - 2.9e-08 34.0 0.0 3.1e-07 30.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HAMP PF00672.25 gi|389848907|ref|YP_006351143.1| - 4.3e-08 33.4 0.2 1.3e-07 31.9 0.2 1.9 1 0 0 1 1 1 1 HAMP domain PAS_9 PF13426.7 gi|389848907|ref|YP_006351143.1| - 5.6e-07 29.8 0.0 4.4e-06 26.9 0.0 2.5 3 0 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.6 gi|389848907|ref|YP_006351143.1| - 7.2e-05 22.6 0.0 0.00024 21.0 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|389848907|ref|YP_006351143.1| - 0.0052 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain FxsA PF04186.13 gi|389848907|ref|YP_006351143.1| - 0.061 13.5 0.3 0.17 12.0 0.3 1.7 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein MlaC PF05494.12 gi|389848907|ref|YP_006351143.1| - 0.091 12.5 0.1 0.55 10.0 0.0 2.4 2 0 0 2 2 2 0 MlaC protein HATPase_c_3 PF13589.6 gi|389848907|ref|YP_006351143.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abhydrolase_6 PF12697.7 gi|389848908|ref|YP_006351144.1| - 9.5e-18 65.6 6.9 1.1e-17 65.4 6.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848908|ref|YP_006351144.1| - 6e-06 26.1 0.0 0.0026 17.5 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389848908|ref|YP_006351144.1| - 0.004 17.3 0.0 0.011 15.9 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Hydrolase_4 PF12146.8 gi|389848908|ref|YP_006351144.1| - 0.041 13.2 0.0 0.22 10.8 0.0 1.9 1 1 0 1 1 1 0 Serine aminopeptidase, S33 HrpE PF06188.12 gi|389848908|ref|YP_006351144.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E TrkA_N PF02254.18 gi|389848909|ref|YP_006351145.1| - 2.8e-40 137.2 9.6 1.5e-20 73.6 1.0 3.2 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|389848909|ref|YP_006351145.1| - 3e-25 87.8 2.8 1.1e-11 44.4 0.0 2.9 3 0 0 3 3 3 2 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|389848909|ref|YP_006351145.1| - 0.0016 17.8 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ion_trans_2 PF07885.16 gi|389848909|ref|YP_006351145.1| - 0.0083 16.1 1.1 0.017 15.1 1.1 1.5 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.21 gi|389848909|ref|YP_006351145.1| - 0.01 15.9 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2117 PF09890.9 gi|389848909|ref|YP_006351145.1| - 0.078 12.4 0.9 0.16 11.4 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2117) IlvN PF07991.12 gi|389848909|ref|YP_006351145.1| - 0.11 12.1 1.7 0.56 9.8 0.1 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TPP_enzyme_M PF00205.22 gi|389848910|ref|YP_006351146.1| - 3e-33 114.5 0.9 4.3e-33 113.9 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|389848910|ref|YP_006351146.1| - 3.7e-31 108.0 0.7 6.8e-31 107.1 0.7 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|389848910|ref|YP_006351146.1| - 4.2e-29 101.3 0.0 6.1e-28 97.6 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.16 gi|389848910|ref|YP_006351146.1| - 0.1 11.5 0.0 0.21 10.5 0.0 1.4 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit Glyco_hydro_3_C PF01915.22 gi|389848910|ref|YP_006351146.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Epimerase PF01370.21 gi|389848911|ref|YP_006351147.1| - 3.2e-42 144.7 0.4 4.1e-42 144.3 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389848911|ref|YP_006351147.1| - 2.3e-40 139.0 0.3 4.5e-39 134.8 0.3 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|389848911|ref|YP_006351147.1| - 5.5e-23 81.4 0.0 7e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|389848911|ref|YP_006351147.1| - 9.4e-17 61.0 1.3 1.2e-16 60.6 1.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|389848911|ref|YP_006351147.1| - 3.3e-13 49.4 0.0 2.6e-11 43.2 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|389848911|ref|YP_006351147.1| - 1.5e-10 41.2 0.3 2.4e-10 40.6 0.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|389848911|ref|YP_006351147.1| - 1.9e-08 33.8 1.1 1.3e-06 27.8 1.1 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|389848911|ref|YP_006351147.1| - 4.8e-07 29.4 1.5 5.8e-07 29.2 0.5 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|389848911|ref|YP_006351147.1| - 7e-07 29.3 0.1 1.3e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|389848911|ref|YP_006351147.1| - 0.00047 19.8 0.4 0.0011 18.6 0.4 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|389848911|ref|YP_006351147.1| - 0.0019 17.8 0.4 0.0035 16.9 0.4 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|389848911|ref|YP_006351147.1| - 0.069 12.5 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|389848911|ref|YP_006351147.1| - 0.075 12.9 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HD PF01966.22 gi|389848912|ref|YP_006351148.1| - 1.5e-09 38.1 0.2 2.2e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|389848912|ref|YP_006351148.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 HD domain HD_2 PF12917.7 gi|389848912|ref|YP_006351148.1| - 0.076 12.8 0.0 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme MmlI PF09448.10 gi|389848913|ref|YP_006351149.1| - 1.6e-26 93.0 5.3 1.3e-11 44.9 0.2 3.9 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|389848913|ref|YP_006351149.1| - 1.1e-23 84.2 13.0 1e-11 45.8 1.7 3.8 2 2 0 2 2 2 2 EthD domain DUF4543 PF15076.6 gi|389848913|ref|YP_006351149.1| - 0.009 16.1 0.4 4.7 7.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4543) FOXP-CC PF16159.5 gi|389848913|ref|YP_006351149.1| - 0.036 14.7 0.4 11 6.7 0.1 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain ABM PF03992.16 gi|389848913|ref|YP_006351149.1| - 0.094 12.8 0.4 5.7 7.1 0.1 2.8 2 2 0 2 2 2 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.24 gi|389848914|ref|YP_006351150.1| - 9.5e-29 100.6 0.1 1.4e-28 100.1 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|389848914|ref|YP_006351150.1| - 0.00021 22.0 0.0 0.00038 21.1 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Transket_pyr PF02779.24 gi|389848915|ref|YP_006351151.1| - 8.3e-49 165.7 0.0 1.2e-48 165.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|389848915|ref|YP_006351151.1| - 3.4e-33 114.2 0.0 6.6e-33 113.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|389848916|ref|YP_006351152.1| - 2.7e-81 272.8 0.0 3.5e-81 272.5 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|389848916|ref|YP_006351152.1| - 9e-07 28.4 0.0 1.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|389848916|ref|YP_006351152.1| - 6.6e-05 22.0 0.1 0.00012 21.2 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 gi|389848916|ref|YP_006351152.1| - 0.0001 22.1 0.1 0.00059 19.7 0.1 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V-ATPase_G_2 PF16999.5 gi|389848916|ref|YP_006351152.1| - 0.073 13.5 3.8 0.29 11.6 3.8 2.0 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Spore_GerAC PF05504.11 gi|389848916|ref|YP_006351152.1| - 0.29 11.3 0.9 0.53 10.5 0.9 1.4 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal SNF PF00209.18 gi|389848917|ref|YP_006351153.1| - 8.5e-50 169.9 30.7 4.3e-25 88.4 9.2 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|389848917|ref|YP_006351153.1| - 0.95 9.8 4.5 0.4 11.0 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) Aminotran_1_2 PF00155.21 gi|389848918|ref|YP_006351154.1| - 1.3e-59 202.3 0.0 1.4e-59 202.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|389848918|ref|YP_006351154.1| - 4.3e-14 52.6 0.0 6.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389848918|ref|YP_006351154.1| - 9.5e-08 31.4 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389848918|ref|YP_006351154.1| - 2.6e-07 30.2 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|389848918|ref|YP_006351154.1| - 2.4e-05 23.0 0.0 3.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aldedh PF00171.22 gi|389848919|ref|YP_006351155.1| - 9.7e-137 456.2 0.0 1.1e-136 456.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.18 gi|389848920|ref|YP_006351156.1| - 8.4e-33 112.9 0.1 3e-32 111.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_24 PF13412.6 gi|389848920|ref|YP_006351156.1| - 1.8e-07 30.6 0.3 9.5e-07 28.3 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389848920|ref|YP_006351156.1| - 2.7e-07 30.3 0.2 7.4e-07 28.9 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848920|ref|YP_006351156.1| - 1.9e-06 27.8 0.9 5.6e-06 26.3 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389848920|ref|YP_006351156.1| - 4.1e-06 26.6 0.2 1.1e-05 25.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|389848920|ref|YP_006351156.1| - 6.2e-06 26.1 0.4 3.6e-05 23.6 0.3 2.3 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|389848920|ref|YP_006351156.1| - 0.00011 22.1 0.2 0.00022 21.1 0.2 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|389848920|ref|YP_006351156.1| - 0.00063 19.6 0.0 0.0021 17.9 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|389848920|ref|YP_006351156.1| - 0.0011 18.7 0.6 0.0025 17.5 0.2 1.8 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain DprA_WH PF17782.1 gi|389848920|ref|YP_006351156.1| - 0.027 14.6 0.1 0.11 12.6 0.1 2.1 2 0 0 2 2 2 0 DprA winged helix domain HTH_AsnC-type PF13404.6 gi|389848920|ref|YP_006351156.1| - 0.052 13.4 0.4 0.19 11.6 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|389848920|ref|YP_006351156.1| - 0.062 13.9 0.2 0.24 12.0 0.2 2.1 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|389848920|ref|YP_006351156.1| - 0.074 12.9 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB T3SS_needle_E PF08988.10 gi|389848920|ref|YP_006351156.1| - 0.16 12.1 1.5 0.19 11.9 0.2 1.8 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle F420_oxidored PF03807.17 gi|389848921|ref|YP_006351157.1| - 1.7e-15 57.4 0.2 3.6e-15 56.3 0.1 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|389848921|ref|YP_006351157.1| - 0.00098 19.4 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|389848921|ref|YP_006351157.1| - 0.001 19.5 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.17 gi|389848921|ref|YP_006351157.1| - 0.0024 16.9 0.1 0.0031 16.5 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389848921|ref|YP_006351157.1| - 0.0065 16.5 0.1 0.022 14.8 0.1 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|389848921|ref|YP_006351157.1| - 0.031 14.2 0.1 0.074 13.0 0.1 1.6 2 0 0 2 2 2 0 KR domain Shikimate_DH PF01488.20 gi|389848921|ref|YP_006351157.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|389848921|ref|YP_006351157.1| - 0.16 12.1 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus zf-FCS PF06467.14 gi|389848922|ref|YP_006351158.1| - 0.013 15.4 3.7 0.036 14.0 3.7 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|389848922|ref|YP_006351158.1| - 0.073 13.4 5.7 0.52 10.7 5.7 2.2 1 1 0 1 1 1 0 Archaeal TRASH domain VATC PF18716.1 gi|389848922|ref|YP_006351158.1| - 0.59 10.0 7.7 0.76 9.7 0.1 2.4 2 1 0 2 2 2 0 Vms1-associating treble clef domain Acetyltransf_10 PF13673.7 gi|389848923|ref|YP_006351159.1| - 8.6e-12 45.1 0.0 1.3e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848923|ref|YP_006351159.1| - 1e-10 41.8 0.1 2.4e-10 40.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848923|ref|YP_006351159.1| - 1.8e-10 41.0 0.0 3.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|389848923|ref|YP_006351159.1| - 4.3e-05 23.6 0.1 0.0003 20.8 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848923|ref|YP_006351159.1| - 0.00031 20.7 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|389848923|ref|YP_006351159.1| - 0.00054 20.1 0.0 0.00083 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|389848923|ref|YP_006351159.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Zn-ribbon_8 PF09723.10 gi|389848923|ref|YP_006351159.1| - 0.035 14.2 1.4 0.077 13.1 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|389848923|ref|YP_006351159.1| - 0.037 13.7 1.3 0.061 13.0 1.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Acetyltransf_3 PF13302.7 gi|389848923|ref|YP_006351159.1| - 0.044 14.5 0.0 0.068 13.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NOB1_Zn_bind PF08772.11 gi|389848923|ref|YP_006351159.1| - 0.082 13.1 1.2 0.14 12.3 1.2 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Adeno_E3B PF03376.14 gi|389848923|ref|YP_006351159.1| - 0.18 12.1 0.0 0.34 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3B protein Acetyltransf_13 PF13880.6 gi|389848923|ref|YP_006351159.1| - 0.18 11.8 0.0 0.54 10.3 0.0 1.7 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase DUF2182 PF09948.9 gi|389848924|ref|YP_006351160.1| - 5.7e-57 192.7 16.3 5.7e-57 192.7 16.3 1.8 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF4064 PF13273.6 gi|389848924|ref|YP_006351160.1| - 0.016 15.5 2.5 0.016 15.5 2.5 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) DUF1326 PF07040.11 gi|389848925|ref|YP_006351161.1| - 5e-44 150.4 0.1 5.7e-44 150.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1326) SUI1 PF01253.22 gi|389848926|ref|YP_006351162.1| - 1.3e-15 57.7 0.0 1.6e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|389848926|ref|YP_006351162.1| - 0.0056 17.0 0.0 0.0075 16.5 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF4479 PF14794.6 gi|389848926|ref|YP_006351162.1| - 0.087 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Acetyltransf_1 PF00583.25 gi|389848927|ref|YP_006351163.1| - 6e-12 45.8 0.0 1.1e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389848927|ref|YP_006351163.1| - 5.5e-11 42.8 0.1 7.8e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848927|ref|YP_006351163.1| - 6.4e-07 29.7 0.0 1.5e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389848927|ref|YP_006351163.1| - 9.5e-05 22.3 0.1 0.00018 21.4 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389848927|ref|YP_006351163.1| - 0.00019 21.5 0.0 0.00048 20.2 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|389848927|ref|YP_006351163.1| - 0.00077 19.6 0.2 0.0034 17.4 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848927|ref|YP_006351163.1| - 0.0022 18.7 0.1 0.0038 17.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389848927|ref|YP_006351163.1| - 0.0083 16.3 0.2 0.032 14.4 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ArsA_ATPase PF02374.15 gi|389848928|ref|YP_006351164.1| - 8.9e-76 255.0 0.0 1e-75 254.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|389848928|ref|YP_006351164.1| - 3.7e-08 33.5 0.0 8.6e-08 32.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848928|ref|YP_006351164.1| - 5.1e-08 33.0 0.0 3.4e-07 30.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389848928|ref|YP_006351164.1| - 1.9e-07 30.8 0.1 0.0014 18.1 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|389848928|ref|YP_006351164.1| - 0.0061 16.1 0.0 0.016 14.7 0.0 1.7 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|389848928|ref|YP_006351164.1| - 0.012 15.3 0.2 0.13 11.8 0.3 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|389848928|ref|YP_006351164.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.18 gi|389848928|ref|YP_006351164.1| - 0.031 13.7 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|389848928|ref|YP_006351164.1| - 0.042 13.1 0.3 4.1 6.6 0.0 2.4 2 0 0 2 2 2 0 ATPase MipZ AAA_24 PF13479.6 gi|389848928|ref|YP_006351164.1| - 0.093 12.4 0.0 0.17 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|389848928|ref|YP_006351164.1| - 0.15 11.6 6.4 0.69 9.5 2.9 2.8 2 2 0 2 2 2 0 AAA domain Thiolase_N PF00108.23 gi|389848929|ref|YP_006351165.1| - 3.8e-76 255.9 0.0 2.2e-75 253.4 0.0 1.9 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848929|ref|YP_006351165.1| - 3.7e-29 100.9 0.0 6.9e-29 100.0 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848929|ref|YP_006351165.1| - 0.0091 15.6 4.5 0.016 14.8 0.1 3.0 4 0 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Rick_17kDa_Anti PF05433.15 gi|389848930|ref|YP_006351166.1| - 0.0097 15.8 4.6 0.027 14.4 4.6 1.7 1 0 0 1 1 1 1 Glycine zipper 2TM domain Sacchrp_dh_NADP PF03435.18 gi|389848931|ref|YP_006351167.1| - 6.7e-13 49.0 0.1 1.2e-12 48.2 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|389848931|ref|YP_006351167.1| - 1.2e-05 25.3 0.3 2e-05 24.5 0.3 1.4 1 0 0 1 1 1 1 NAD(P)H-binding SVIP PF15811.5 gi|389848931|ref|YP_006351167.1| - 0.1 13.1 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 Small VCP/p97-interacting protein Putative_PNPOx PF01243.20 gi|389848932|ref|YP_006351168.1| - 1.1e-14 54.3 0.0 1.7e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|389848932|ref|YP_006351168.1| - 2.1e-08 34.3 0.1 2.9e-08 33.8 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|389848932|ref|YP_006351168.1| - 0.0048 16.5 0.0 0.0059 16.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like PBP PF01161.20 gi|389848933|ref|YP_006351169.1| - 3e-34 118.2 0.2 3.7e-34 117.9 0.2 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein UPF0182 PF03699.13 gi|389848934|ref|YP_006351170.1| - 1e-271 903.5 4.7 1.2e-271 903.3 4.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) ApoO PF09769.9 gi|389848934|ref|YP_006351170.1| - 0.088 12.8 1.2 0.45 10.5 0.0 2.5 2 0 0 2 2 2 0 Apolipoprotein O TF_Zn_Ribbon PF08271.12 gi|389848935|ref|YP_006351171.1| - 0.0047 16.4 0.2 0.0065 16.0 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding IRF-2BP1_2 PF11261.8 gi|389848936|ref|YP_006351172.1| - 0.018 14.6 0.9 0.069 12.7 0.5 2.0 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger KH_7 PF17214.3 gi|389848936|ref|YP_006351172.1| - 0.053 13.5 0.1 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 KH domain Npa1 PF11707.8 gi|389848937|ref|YP_006351173.1| - 0.19 11.1 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal BtrH_N PF14399.6 gi|389848938|ref|YP_006351174.1| - 5.5e-24 84.9 0.0 1.1e-23 84.0 0.0 1.5 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal DUF4872 PF16169.5 gi|389848938|ref|YP_006351174.1| - 6e-17 61.9 0.3 8e-17 61.5 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4872) Peptidase_C39_2 PF13529.6 gi|389848938|ref|YP_006351174.1| - 0.00019 22.0 0.0 0.00071 20.1 0.0 1.9 1 1 0 1 1 1 1 Peptidase_C39 like family Peptidase_C39 PF03412.15 gi|389848938|ref|YP_006351174.1| - 0.14 12.0 0.0 3.6 7.4 0.1 2.3 2 0 0 2 2 2 0 Peptidase C39 family P5CR_dimer PF14748.6 gi|389848938|ref|YP_006351174.1| - 0.16 12.2 0.4 0.4 11.0 0.0 1.8 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Abhydrolase_1 PF00561.20 gi|389848939|ref|YP_006351175.1| - 8.2e-12 45.3 0.0 1.9e-10 40.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848939|ref|YP_006351175.1| - 2.2e-07 30.4 0.0 0.0034 16.7 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PhaC_N PF07167.13 gi|389848939|ref|YP_006351175.1| - 2.8e-07 30.4 0.1 4.5e-07 29.7 0.1 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DUF3141 PF11339.8 gi|389848939|ref|YP_006351175.1| - 1.1e-06 27.4 0.0 1.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|389848939|ref|YP_006351175.1| - 0.00018 21.1 0.0 0.41 10.2 0.0 2.4 2 0 0 2 2 2 2 Dienelactone hydrolase family FSH1 PF03959.13 gi|389848939|ref|YP_006351175.1| - 0.00089 19.0 0.0 0.034 13.8 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Thioesterase PF00975.20 gi|389848939|ref|YP_006351175.1| - 0.087 12.9 0.1 0.21 11.7 0.0 1.6 2 0 0 2 2 2 0 Thioesterase domain PHB_depo_C PF06850.11 gi|389848939|ref|YP_006351175.1| - 0.092 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 PHB de-polymerase C-terminus HTH_IclR PF09339.10 gi|389848940|ref|YP_006351176.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|389848940|ref|YP_006351176.1| - 0.0059 16.5 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|389848940|ref|YP_006351176.1| - 0.0097 16.1 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|389848940|ref|YP_006351176.1| - 0.036 14.0 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389848940|ref|YP_006351176.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 MarR family FA_desaturase PF00487.24 gi|389848941|ref|YP_006351177.1| - 0.16 11.8 7.0 0.19 11.5 0.4 2.0 1 1 1 2 2 2 0 Fatty acid desaturase AAA_16 PF13191.6 gi|389848942|ref|YP_006351178.1| - 9.5e-05 22.8 8.0 0.41 11.0 1.5 5.0 4 1 0 4 4 4 2 AAA ATPase domain AAA_33 PF13671.6 gi|389848942|ref|YP_006351178.1| - 0.0052 16.9 0.5 1 9.5 0.0 3.7 4 0 0 4 4 4 1 AAA domain BTAD PF03704.17 gi|389848943|ref|YP_006351179.1| - 0.013 16.0 45.0 0.71 10.3 0.4 10.8 7 4 2 10 10 10 0 Bacterial transcriptional activator domain HTH_31 PF13560.6 gi|389848943|ref|YP_006351179.1| - 0.04 14.3 7.3 4 7.9 0.0 5.1 5 0 0 5 5 5 0 Helix-turn-helix domain DUF533 PF04391.12 gi|389848943|ref|YP_006351179.1| - 0.13 11.9 9.8 11 5.5 0.0 5.3 5 0 0 5 5 5 0 Protein of unknown function (DUF533) TetR_C_27 PF17935.1 gi|389848943|ref|YP_006351179.1| - 0.36 10.9 4.6 9.8 6.3 0.1 4.3 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain SIL1 PF16782.5 gi|389848943|ref|YP_006351179.1| - 0.57 9.3 3.1 20 4.2 0.0 3.9 4 0 0 4 4 4 0 Nucleotide exchange factor SIL1 TPR_19 PF14559.6 gi|389848943|ref|YP_006351179.1| - 7.7 7.1 43.9 2.9 8.5 0.0 13.1 15 1 0 15 15 15 0 Tetratricopeptide repeat EthD PF07110.11 gi|389848944|ref|YP_006351180.1| - 0.14 13.3 0.0 0.2 12.8 0.0 1.2 1 0 0 1 1 1 0 EthD domain Beta_helix PF13229.6 gi|389848945|ref|YP_006351181.1| - 0.008 16.0 4.8 0.008 16.0 4.8 2.0 2 0 0 2 2 2 1 Right handed beta helix region DUF4843 PF16132.5 gi|389848945|ref|YP_006351181.1| - 0.056 13.0 0.0 2.9 7.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4843) AHSA1 PF08327.11 gi|389848945|ref|YP_006351181.1| - 0.075 13.3 0.1 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein MRP-S35 PF10246.9 gi|389848945|ref|YP_006351181.1| - 0.16 12.0 0.0 0.52 10.3 0.0 1.8 1 0 0 1 1 1 0 Mitochondrial ribosomal protein MRP-S35 BCA_ABC_TP_C PF12399.8 gi|389848945|ref|YP_006351181.1| - 2.4 8.1 6.6 1 9.4 0.4 2.8 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter PadR PF03551.14 gi|389848949|ref|YP_006351185.1| - 6.1e-17 61.4 0.7 7.7e-17 61.0 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389848949|ref|YP_006351185.1| - 5.6e-05 23.6 0.1 7e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389848949|ref|YP_006351185.1| - 0.0009 19.0 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|389848949|ref|YP_006351185.1| - 0.00093 19.1 0.0 0.0016 18.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|389848949|ref|YP_006351185.1| - 0.0075 16.4 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HSP20 PF00011.21 gi|389848951|ref|YP_006351187.1| - 4.3e-17 62.1 0.0 5.5e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389848951|ref|YP_006351187.1| - 2.4e-10 39.8 0.0 3.3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PRO8NT PF08082.11 gi|389848951|ref|YP_006351187.1| - 0.006 16.5 0.3 0.66 9.9 0.2 2.0 1 1 1 2 2 2 2 PRO8NT (NUC069), PrP8 N-terminal domain PIH1_CS PF18201.1 gi|389848951|ref|YP_006351187.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.1 1 0 0 1 1 1 0 PIH1 CS-like domain Peptidase_S8 PF00082.22 gi|389848954|ref|YP_006351190.1| - 2.1e-14 53.5 0.1 2.9e-14 53.0 0.1 1.2 1 0 0 1 1 1 1 Subtilase family ABC_tran PF00005.27 gi|389848955|ref|YP_006351191.1| - 8.3e-35 120.3 0.0 1.2e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848955|ref|YP_006351191.1| - 1.1e-10 41.6 0.5 2.7e-10 40.3 0.5 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|389848955|ref|YP_006351191.1| - 1.5e-07 31.5 0.1 0.00026 20.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|389848955|ref|YP_006351191.1| - 0.0056 17.1 0.5 0.047 14.1 0.5 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|389848955|ref|YP_006351191.1| - 0.0074 16.2 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|389848955|ref|YP_006351191.1| - 0.023 15.1 0.9 0.044 14.2 0.9 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|389848955|ref|YP_006351191.1| - 0.037 14.3 0.9 0.08 13.2 0.1 1.8 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848955|ref|YP_006351191.1| - 0.05 12.9 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin CysA_C_terminal PF17850.1 gi|389848955|ref|YP_006351191.1| - 0.059 14.0 0.0 0.28 11.8 0.0 2.3 2 0 0 2 2 2 0 CysA C-terminal regulatory domain G-alpha PF00503.20 gi|389848955|ref|YP_006351191.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|389848955|ref|YP_006351191.1| - 0.15 12.2 0.7 1.1 9.5 0.7 2.2 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|389848955|ref|YP_006351191.1| - 0.19 11.4 0.2 0.53 10.0 0.2 1.8 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|389848955|ref|YP_006351191.1| - 0.21 10.9 0.2 13 5.0 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_15 PF13175.6 gi|389848955|ref|YP_006351191.1| - 0.32 10.6 0.0 8.6 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|389848956|ref|YP_006351192.1| - 1e-09 38.4 14.3 1e-09 38.4 14.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848957|ref|YP_006351193.1| - 4.6e-10 39.5 19.3 4.6e-10 39.5 19.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|389848958|ref|YP_006351194.1| - 4.8e-19 68.7 0.2 8.7e-19 67.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848958|ref|YP_006351194.1| - 1e-13 51.9 6.5 1e-13 51.9 6.5 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848958|ref|YP_006351194.1| - 1.5e-11 44.5 0.0 2.3e-11 43.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848958|ref|YP_006351194.1| - 0.011 15.6 2.3 0.011 15.6 2.3 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|389848958|ref|YP_006351194.1| - 7.5 6.0 7.4 0.57 9.6 1.1 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BCCT PF02028.17 gi|389848959|ref|YP_006351195.1| - 9.7e-115 383.8 52.5 1.2e-114 383.5 52.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter DUF1360 PF07098.11 gi|389848959|ref|YP_006351195.1| - 0.16 11.9 3.3 0.21 11.6 0.2 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1360) Fer2 PF00111.27 gi|389848960|ref|YP_006351196.1| - 1.9e-11 43.7 0.1 2.6e-11 43.3 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|389848960|ref|YP_006351196.1| - 0.0011 18.9 0.3 0.007 16.4 0.3 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UbiA PF01040.18 gi|389848961|ref|YP_006351197.1| - 4.3e-09 36.0 30.8 4.4e-09 36.0 28.4 2.2 1 1 1 2 2 2 1 UbiA prenyltransferase family Peptidase_S24 PF00717.23 gi|389848963|ref|YP_006351199.1| - 5.7e-08 32.6 0.0 1.3e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like GCV_T_C PF08669.11 gi|389848963|ref|YP_006351199.1| - 0.0099 15.8 0.5 0.11 12.5 0.1 2.8 2 1 0 3 3 3 1 Glycine cleavage T-protein C-terminal barrel domain EpuA PF11772.8 gi|389848963|ref|YP_006351199.1| - 5.7 6.7 10.9 7 6.4 2.2 2.9 3 0 0 3 3 3 0 DNA-directed RNA polymerase subunit beta Laminin_G_3 PF13385.6 gi|389848964|ref|YP_006351200.1| - 6.6e-18 65.3 0.1 6.6e-18 65.3 0.1 2.0 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily DUF1152 PF06626.12 gi|389848965|ref|YP_006351201.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1152) Holin_SPP1 PF04688.13 gi|389848966|ref|YP_006351202.1| - 0.17 12.1 0.5 0.35 11.1 0.5 1.4 1 0 0 1 1 1 0 SPP1 phage holin DUF4131 PF13567.6 gi|389848966|ref|YP_006351202.1| - 0.44 10.2 2.4 0.41 10.3 1.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ERp29_N PF07912.13 gi|389848967|ref|YP_006351203.1| - 0.051 13.7 0.1 0.1 12.8 0.1 1.5 1 0 0 1 1 1 0 ERp29, N-terminal domain YSIRK_signal PF04650.17 gi|389848968|ref|YP_006351204.1| - 1.4 8.9 3.5 2.3 8.1 3.5 1.4 1 0 0 1 1 1 0 YSIRK type signal peptide Sporozoite_P67 PF05642.11 gi|389848969|ref|YP_006351205.1| - 0.00092 17.4 2.5 0.00096 17.4 2.5 1.1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen CDC45 PF02724.14 gi|389848969|ref|YP_006351205.1| - 0.002 16.5 0.7 0.0021 16.4 0.7 1.1 1 0 0 1 1 1 1 CDC45-like protein GBP_PSP PF02425.15 gi|389848969|ref|YP_006351205.1| - 0.0088 15.7 0.6 0.53 10.0 0.0 2.5 2 0 0 2 2 2 1 Paralytic/GBP/PSP peptide FAM176 PF14851.6 gi|389848969|ref|YP_006351205.1| - 7.2 6.3 6.2 13 5.4 6.2 1.5 1 0 0 1 1 1 0 FAM176 family Nop14 PF04147.12 gi|389848969|ref|YP_006351205.1| - 8.9 4.4 12.9 11 4.0 12.9 1.0 1 0 0 1 1 1 0 Nop14-like family DUF5305 PF17231.2 gi|389848971|ref|YP_006351207.1| - 1.5e-40 139.0 0.0 3.8e-39 134.4 0.0 2.6 3 0 0 3 3 3 1 Family of unknown function (DUF5305) Phospholamban PF04272.14 gi|389848971|ref|YP_006351207.1| - 0.18 11.3 0.1 0.31 10.5 0.1 1.3 1 0 0 1 1 1 0 Phospholamban Rhomboid PF01694.22 gi|389848972|ref|YP_006351208.1| - 9.5e-06 25.7 19.5 0.0014 18.7 10.2 2.1 1 1 1 2 2 2 2 Rhomboid family MerC PF03203.14 gi|389848972|ref|YP_006351208.1| - 1 9.9 10.6 0.62 10.5 3.4 2.5 2 0 0 2 2 2 0 MerC mercury resistance protein OppC_N PF12911.7 gi|389848972|ref|YP_006351208.1| - 1 9.4 3.7 4.9 7.2 0.0 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF1772 PF08592.11 gi|389848972|ref|YP_006351208.1| - 4.2 7.7 8.9 29 5.0 8.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) NifU PF01106.17 gi|389848977|ref|YP_006351213.1| - 3.6e-13 49.5 0.1 5.1e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain Fe_dep_repress PF01325.19 gi|389848978|ref|YP_006351214.1| - 2.6e-09 37.1 0.0 4.6e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|389848978|ref|YP_006351214.1| - 0.0045 16.9 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389848978|ref|YP_006351214.1| - 0.02 14.5 0.0 0.069 12.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repr_C PF02742.15 gi|389848978|ref|YP_006351214.1| - 0.059 13.5 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|389848978|ref|YP_006351214.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|389848978|ref|YP_006351214.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Peripla_BP_2 PF01497.18 gi|389848981|ref|YP_006351217.1| - 3e-14 53.2 0.0 4.7e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389848981|ref|YP_006351217.1| - 0.057 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HEAT_2 PF13646.6 gi|389848982|ref|YP_006351218.1| - 3e-14 53.1 6.2 2.1e-05 24.8 2.0 3.4 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.6 gi|389848982|ref|YP_006351218.1| - 1.2e-09 38.5 6.8 0.17 12.4 0.0 5.5 2 1 3 5 5 5 5 HEAT-like repeat HEAT PF02985.22 gi|389848982|ref|YP_006351218.1| - 2.5e-07 30.4 8.2 0.61 10.5 0.1 5.8 6 0 0 6 6 6 2 HEAT repeat Cnd1 PF12717.7 gi|389848982|ref|YP_006351218.1| - 3e-07 30.6 0.0 0.26 11.3 0.0 3.2 1 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|389848982|ref|YP_006351218.1| - 6.8e-05 21.6 0.0 0.00073 18.2 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region zinc_ribbon_2 PF13240.6 gi|389848982|ref|YP_006351218.1| - 0.00016 21.3 3.0 0.00033 20.3 3.0 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|389848982|ref|YP_006351218.1| - 0.0059 16.0 6.0 0.076 12.4 0.5 2.3 1 1 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|389848982|ref|YP_006351218.1| - 0.0066 16.4 0.7 0.013 15.6 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon API5 PF05918.11 gi|389848982|ref|YP_006351218.1| - 0.35 9.6 0.6 14 4.4 0.1 2.1 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) ORMDL PF04061.14 gi|389848983|ref|YP_006351219.1| - 0.2 11.5 0.1 0.28 11.0 0.1 1.2 1 0 0 1 1 1 0 ORMDL family Reprolysin_4 PF13583.6 gi|389848984|ref|YP_006351220.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|389848984|ref|YP_006351220.1| - 0.05 14.1 0.0 0.094 13.2 0.0 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.8 gi|389848984|ref|YP_006351220.1| - 0.061 12.9 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.6 gi|389848984|ref|YP_006351220.1| - 0.07 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Astacin PF01400.24 gi|389848984|ref|YP_006351220.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Polyketide_cyc2 PF10604.9 gi|389848985|ref|YP_006351221.1| - 1.6e-06 28.4 0.9 2.4e-06 27.9 0.9 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_10 PF04967.12 gi|389848987|ref|YP_006351223.1| - 6.1e-14 51.6 0.1 1.1e-13 50.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848987|ref|YP_006351223.1| - 0.00055 19.6 0.2 0.0055 16.3 0.2 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389848987|ref|YP_006351223.1| - 0.0083 15.6 0.2 0.016 14.7 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|389848987|ref|YP_006351223.1| - 0.0093 15.9 0.1 0.021 14.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|389848987|ref|YP_006351223.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|389848987|ref|YP_006351223.1| - 0.034 14.0 0.0 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|389848987|ref|YP_006351223.1| - 0.11 12.3 0.4 0.47 10.3 0.4 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|389848987|ref|YP_006351223.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 GerE PF00196.19 gi|389848987|ref|YP_006351223.1| - 0.2 11.2 0.0 5.3 6.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sacchrp_dh_NADP PF03435.18 gi|389848988|ref|YP_006351224.1| - 2.3e-11 44.1 0.1 3.7e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|389848988|ref|YP_006351224.1| - 1.6e-06 28.2 0.1 3.5e-06 27.0 0.1 1.6 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|389848988|ref|YP_006351224.1| - 2.2e-06 27.7 0.2 4.6e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|389848988|ref|YP_006351224.1| - 0.00055 20.0 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.25 gi|389848988|ref|YP_006351224.1| - 0.0018 17.8 0.3 0.0036 16.8 0.3 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|389848988|ref|YP_006351224.1| - 0.0052 17.2 0.0 0.0088 16.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|389848988|ref|YP_006351224.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|389848988|ref|YP_006351224.1| - 0.043 13.9 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 3Beta_HSD PF01073.19 gi|389848988|ref|YP_006351224.1| - 0.11 11.5 0.0 0.49 9.4 0.0 1.9 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Gp_dh_N PF00044.24 gi|389848988|ref|YP_006351224.1| - 0.16 12.3 0.1 0.39 11.1 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|389848988|ref|YP_006351224.1| - 0.19 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein FaeA PF04703.12 gi|389848990|ref|YP_006351226.1| - 0.021 15.2 0.0 0.24 11.8 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein TrmB PF01978.19 gi|389848990|ref|YP_006351226.1| - 0.07 13.0 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|389848990|ref|YP_006351226.1| - 0.14 12.1 0.1 4 7.4 0.0 2.6 2 0 0 2 2 2 0 HTH domain AlbA_2 PF04326.14 gi|389848992|ref|YP_006351228.1| - 9.5e-12 45.3 0.0 1.8e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain DUF1447 PF07288.11 gi|389848992|ref|YP_006351228.1| - 0.044 13.8 0.7 0.32 11.1 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) VbhA PF18495.1 gi|389848993|ref|YP_006351229.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Antitoxin VbhA Phage_integrase PF00589.22 gi|389848995|ref|YP_006351231.1| - 0.00094 19.0 0.0 0.002 17.9 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family DUF2971 PF11185.8 gi|389848996|ref|YP_006351232.1| - 0.034 15.3 0.0 0.29 12.3 0.0 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2971) DUF4437 PF14499.6 gi|389848997|ref|YP_006351233.1| - 0.066 12.3 0.0 0.079 12.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) Anti-TRAP PF15777.5 gi|389848998|ref|YP_006351234.1| - 0.023 14.7 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DNA_RNApol_7kD PF03604.13 gi|389848998|ref|YP_006351234.1| - 0.027 14.2 0.5 7.1 6.4 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.22 gi|389848998|ref|YP_006351234.1| - 0.17 11.8 0.6 0.31 11.0 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ACC PF17848.1 gi|389848998|ref|YP_006351234.1| - 0.25 11.4 5.9 5.3 7.2 0.1 3.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_6 PF14599.6 gi|389848998|ref|YP_006351234.1| - 0.65 10.1 3.3 2.7 8.1 0.1 2.4 1 1 1 2 2 2 0 Zinc-ribbon Glyco_hydro_97 PF10566.9 gi|389848999|ref|YP_006351235.1| - 1e-88 297.3 0.0 1.6e-88 296.7 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|389848999|ref|YP_006351235.1| - 1.7e-73 247.0 0.0 3.4e-73 246.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal Glucodextran_C PF09985.9 gi|389848999|ref|YP_006351235.1| - 7.9e-51 172.7 0.1 1.7e-50 171.6 0.1 1.6 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase GH97_C PF14509.6 gi|389848999|ref|YP_006351235.1| - 6e-25 87.3 0.0 4.4e-24 84.5 0.0 2.6 2 1 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.15 gi|389848999|ref|YP_006351235.1| - 1.8e-06 28.3 0.5 1.8e-06 28.3 0.5 3.3 3 0 0 3 3 3 1 Carbohydrate binding module (family 6) CBM_35 PF16990.5 gi|389848999|ref|YP_006351235.1| - 4.4e-06 27.0 0.6 1.9e-05 24.9 0.1 2.3 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) DUF4249 PF14054.6 gi|389848999|ref|YP_006351235.1| - 0.0007 19.3 0.6 0.0013 18.4 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4249) DUF5010_C PF18099.1 gi|389848999|ref|YP_006351235.1| - 0.0043 17.2 0.1 0.023 14.8 0.0 2.3 2 0 0 2 2 2 1 DUF5010 C-terminal domain DUF2799 PF10973.8 gi|389848999|ref|YP_006351235.1| - 0.0065 16.9 0.6 0.025 15.0 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2799) BclA_C PF18573.1 gi|389848999|ref|YP_006351235.1| - 1.1 9.1 4.1 35 4.3 1.5 3.3 3 0 0 3 3 3 0 BclA C-terminal domain CarboxypepD_reg PF13620.6 gi|389848999|ref|YP_006351235.1| - 5.7 7.3 25.1 0.2 11.9 3.0 6.7 7 0 0 7 7 7 0 Carboxypeptidase regulatory-like domain HATPase_c PF02518.26 gi|389849000|ref|YP_006351236.1| - 3.7e-16 59.6 0.4 6.7e-16 58.8 0.4 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389849000|ref|YP_006351236.1| - 1.6e-12 47.2 1.8 1.6e-12 47.2 1.8 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|389849000|ref|YP_006351236.1| - 1.8e-07 31.4 0.1 4.4e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|389849000|ref|YP_006351236.1| - 4e-07 30.2 0.0 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|389849000|ref|YP_006351236.1| - 1.1e-05 25.3 0.5 5.9e-05 23.0 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|389849000|ref|YP_006351236.1| - 8.6e-05 22.5 0.0 0.00029 20.8 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389849000|ref|YP_006351236.1| - 0.00094 19.4 0.0 0.0024 18.1 0.0 1.8 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|389849000|ref|YP_006351236.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PadR PF03551.14 gi|389849001|ref|YP_006351237.1| - 5.1e-10 39.2 0.1 6.2e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|389849001|ref|YP_006351237.1| - 1.6e-05 24.8 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|389849001|ref|YP_006351237.1| - 0.00026 21.4 0.0 0.00039 20.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389849001|ref|YP_006351237.1| - 0.00099 18.9 0.2 0.0012 18.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|389849001|ref|YP_006351237.1| - 0.0024 17.9 0.2 0.0027 17.8 0.2 1.1 1 0 0 1 1 1 1 Replication-relaxation DUF4364 PF14277.6 gi|389849001|ref|YP_006351237.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) WAPL PF07814.13 gi|389849001|ref|YP_006351237.1| - 0.077 11.8 0.0 0.085 11.6 0.0 1.0 1 0 0 1 1 1 0 Wings apart-like protein regulation of heterochromatin Mrr_N PF14338.6 gi|389849001|ref|YP_006351237.1| - 0.08 13.1 1.5 0.18 12.0 0.1 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain AstE_AspA PF04952.14 gi|389849002|ref|YP_006351238.1| - 3.3e-11 42.8 0.0 5.9e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|389849002|ref|YP_006351238.1| - 1.2e-06 28.1 0.0 3.8e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Carboxypeptidase controlling helical cell shape catalytic Thioredoxin_4 PF13462.6 gi|389849002|ref|YP_006351238.1| - 0.011 15.9 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|389849002|ref|YP_006351238.1| - 0.016 15.0 0.0 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 DSBA-like thioredoxin domain NTP_transferase PF00483.23 gi|389849003|ref|YP_006351239.1| - 8.2e-38 130.4 0.0 1.1e-37 129.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849003|ref|YP_006351239.1| - 5.2e-16 59.4 0.1 9e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849003|ref|YP_006351239.1| - 1.2e-09 37.5 19.1 9.6e-05 22.0 0.9 5.0 3 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|389849003|ref|YP_006351239.1| - 1e-05 25.4 0.1 1.6e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peripla_BP_6 PF13458.6 gi|389849003|ref|YP_006351239.1| - 0.013 15.2 0.3 0.027 14.1 0.1 1.5 1 1 0 1 1 1 0 Periplasmic binding protein DUF4954 PF16314.5 gi|389849003|ref|YP_006351239.1| - 0.079 11.1 0.3 0.11 10.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Asn_synthase PF00733.21 gi|389849004|ref|YP_006351240.1| - 4.3e-08 33.2 0.1 1.3e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase SIS PF01380.22 gi|389849005|ref|YP_006351241.1| - 2.1e-41 140.9 0.4 1.8e-19 69.9 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|389849005|ref|YP_006351241.1| - 4.7e-21 75.4 0.1 1.1e-20 74.2 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|389849005|ref|YP_006351241.1| - 3.6e-18 65.6 0.0 6.5e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389849005|ref|YP_006351241.1| - 0.0016 17.4 0.0 0.0029 16.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II FMN_dh PF01070.18 gi|389849005|ref|YP_006351241.1| - 0.019 14.0 0.2 0.038 13.0 0.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase SIS_2 PF13580.6 gi|389849005|ref|YP_006351241.1| - 0.057 13.4 2.7 3.4 7.7 0.0 3.2 3 1 1 4 4 4 0 SIS domain DUF3700 PF12481.8 gi|389849005|ref|YP_006351241.1| - 0.068 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Aluminium induced protein DUF2206 PF09971.9 gi|389849006|ref|YP_006351242.1| - 2e-09 36.7 0.9 4.7e-09 35.5 0.9 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2206) PMT_2 PF13231.6 gi|389849006|ref|YP_006351242.1| - 7.5e-06 26.2 14.4 7.5e-06 26.2 14.4 3.6 3 2 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase ATPgrasp_Ter PF15632.6 gi|389849007|ref|YP_006351243.1| - 1.4e-22 79.8 0.0 2.2e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon TrkA_N PF02254.18 gi|389849007|ref|YP_006351243.1| - 0.06 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain ATP-grasp_4 PF13535.6 gi|389849007|ref|YP_006351243.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain DUF354 PF04007.12 gi|389849008|ref|YP_006351244.1| - 2e-24 86.3 0.0 2.3e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|389849008|ref|YP_006351244.1| - 0.00014 21.9 0.0 0.00036 20.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|389849008|ref|YP_006351244.1| - 0.0098 15.9 0.4 0.0098 15.9 0.4 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 UDPG_MGDP_dh_N PF03721.14 gi|389849009|ref|YP_006351245.1| - 1.9e-35 122.1 0.2 3.1e-35 121.4 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849009|ref|YP_006351245.1| - 6.8e-24 83.9 0.0 2.8e-23 81.9 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849009|ref|YP_006351245.1| - 2.1e-18 66.7 0.0 5.9e-18 65.2 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|389849009|ref|YP_006351245.1| - 4.9e-06 26.8 0.0 1.3e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|389849009|ref|YP_006351245.1| - 0.0016 17.9 0.1 0.07 12.5 0.0 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389849009|ref|YP_006351245.1| - 0.0032 17.7 0.3 0.31 11.3 0.0 3.2 2 1 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|389849009|ref|YP_006351245.1| - 0.012 15.6 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849009|ref|YP_006351245.1| - 0.027 14.4 0.1 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|389849009|ref|YP_006351245.1| - 0.18 11.4 0.0 0.41 10.3 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|389849010|ref|YP_006351246.1| - 4.7e-35 120.9 0.0 7.9e-35 120.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849010|ref|YP_006351246.1| - 5.7e-21 74.5 0.0 1.1e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849010|ref|YP_006351246.1| - 3.8e-14 53.0 0.3 1e-13 51.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|389849010|ref|YP_006351246.1| - 1.7e-05 25.0 0.0 0.00015 22.0 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389849010|ref|YP_006351246.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849010|ref|YP_006351246.1| - 0.066 13.1 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Hexapep PF00132.24 gi|389849011|ref|YP_006351247.1| - 7.8e-27 92.0 19.2 3.2e-08 33.0 0.7 5.1 4 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849011|ref|YP_006351247.1| - 1.2e-10 41.0 21.3 3.6e-05 23.4 0.3 5.4 2 1 3 5 5 5 5 Hexapeptide repeat of succinyl-transferase DUF1616 PF07760.11 gi|389849012|ref|YP_006351248.1| - 1e-66 225.3 5.3 1.4e-66 224.9 5.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF3040 PF11239.8 gi|389849012|ref|YP_006351248.1| - 2.7 8.3 12.8 4.1 7.7 2.7 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) YdjM PF04307.14 gi|389849013|ref|YP_006351249.1| - 5.1e-08 32.4 4.9 6.5e-08 32.1 4.9 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|389849013|ref|YP_006351249.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.5 2 0 0 2 2 2 0 Zinc dependent phospholipase C Pectate_lyase_3 PF12708.7 gi|389849014|ref|YP_006351250.1| - 1.5e-07 31.5 2.4 3.6e-06 27.0 0.0 2.5 2 0 0 2 2 2 2 Pectate lyase superfamily protein HTH_10 PF04967.12 gi|389849015|ref|YP_006351251.1| - 8.6e-18 63.9 0.0 1.6e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389849015|ref|YP_006351251.1| - 7e-10 39.0 0.8 3.9e-08 33.3 0.0 2.2 2 1 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|389849015|ref|YP_006351251.1| - 1.4e-07 31.3 0.1 3.3e-07 30.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849015|ref|YP_006351251.1| - 7.3e-07 28.6 0.2 1.4e-06 27.8 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|389849015|ref|YP_006351251.1| - 9.8e-07 28.2 0.0 3.1e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|389849015|ref|YP_006351251.1| - 0.00017 21.6 0.2 0.00098 19.2 0.1 2.1 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389849015|ref|YP_006351251.1| - 0.0022 17.8 1.0 0.0022 17.8 1.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389849015|ref|YP_006351251.1| - 0.0028 17.3 0.9 0.0057 16.3 0.3 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|389849015|ref|YP_006351251.1| - 0.0036 17.3 0.1 0.0071 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_50 PF18024.1 gi|389849015|ref|YP_006351251.1| - 0.0065 16.1 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849015|ref|YP_006351251.1| - 0.022 14.8 0.0 0.09 12.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|389849015|ref|YP_006351251.1| - 0.046 13.5 0.2 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|389849015|ref|YP_006351251.1| - 0.048 13.9 0.2 0.1 12.8 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|389849015|ref|YP_006351251.1| - 0.078 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 HTH domain KORA PF16509.5 gi|389849015|ref|YP_006351251.1| - 0.099 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_1 PF00126.27 gi|389849015|ref|YP_006351251.1| - 0.12 12.4 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|389849015|ref|YP_006351251.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|389849015|ref|YP_006351251.1| - 0.16 12.0 0.1 0.27 11.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_WhiA PF02650.14 gi|389849015|ref|YP_006351251.1| - 0.21 12.0 0.0 0.39 11.1 0.0 1.3 1 0 0 1 1 1 0 WhiA C-terminal HTH domain Glycos_transf_2 PF00535.26 gi|389849016|ref|YP_006351252.1| - 3.2e-21 75.9 0.0 4.8e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849016|ref|YP_006351252.1| - 9.3e-05 22.4 0.0 0.00025 21.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389849016|ref|YP_006351252.1| - 0.00089 19.7 0.2 0.0042 17.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 CopD PF05425.13 gi|389849016|ref|YP_006351252.1| - 0.045 14.2 0.2 0.068 13.6 0.2 1.3 1 0 0 1 1 1 0 Copper resistance protein D DUF4282 PF14110.6 gi|389849016|ref|YP_006351252.1| - 0.12 13.1 1.4 0.22 12.3 1.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) GLTT PF01744.20 gi|389849016|ref|YP_006351252.1| - 0.16 11.7 2.0 0.29 11.0 2.0 1.4 1 0 0 1 1 1 0 GLTT repeat (6 copies) Beta_helix PF13229.6 gi|389849017|ref|YP_006351253.1| - 2.1e-06 27.7 3.8 0.00022 21.1 1.8 3.5 1 1 2 3 3 3 3 Right handed beta helix region Glycos_transf_1 PF00534.20 gi|389849018|ref|YP_006351254.1| - 1.8e-41 141.5 0.0 2.8e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389849018|ref|YP_006351254.1| - 7e-31 107.4 0.0 1.3e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389849018|ref|YP_006351254.1| - 1.8e-15 57.4 0.1 6.7e-15 55.5 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389849018|ref|YP_006351254.1| - 5.5e-10 39.9 0.1 2.9e-09 37.6 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389849018|ref|YP_006351254.1| - 2e-09 37.7 0.0 4.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|389849018|ref|YP_006351254.1| - 0.0042 17.1 0.0 0.0097 15.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|389849018|ref|YP_006351254.1| - 0.018 14.7 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 Starch synthase catalytic domain Polysacc_synt_C PF14667.6 gi|389849019|ref|YP_006351255.1| - 2.3e-14 53.7 13.2 2.3e-14 53.7 13.2 4.4 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|389849019|ref|YP_006351255.1| - 3.6e-09 36.3 8.8 3.6e-09 36.3 8.8 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|389849019|ref|YP_006351255.1| - 1.5e-05 24.5 21.8 4.1e-05 23.1 21.8 1.7 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DUF4149 PF13664.6 gi|389849019|ref|YP_006351255.1| - 0.023 15.0 0.7 0.023 15.0 0.7 3.6 5 1 0 5 5 5 0 Domain of unknown function (DUF4149) Mucin PF01456.17 gi|389849020|ref|YP_006351256.1| - 0.85 9.6 23.8 1.2 9.1 23.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Glycos_transf_2 PF00535.26 gi|389849021|ref|YP_006351257.1| - 1.1e-37 129.5 0.1 1.4e-37 129.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849021|ref|YP_006351257.1| - 8.6e-20 71.6 0.0 1.2e-19 71.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|389849021|ref|YP_006351257.1| - 1.5e-16 60.7 0.1 6.7e-16 58.6 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389849021|ref|YP_006351257.1| - 0.00077 19.9 0.1 0.0017 18.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|389849021|ref|YP_006351257.1| - 0.0019 17.7 0.0 0.0052 16.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|389849021|ref|YP_006351257.1| - 0.0084 16.0 0.0 0.017 15.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 MarR_2 PF12802.7 gi|389849022|ref|YP_006351258.1| - 6.1e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389849022|ref|YP_006351258.1| - 6.7e-05 22.6 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389849022|ref|YP_006351258.1| - 0.00077 19.3 0.1 0.0016 18.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849022|ref|YP_006351258.1| - 0.0021 17.6 0.0 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389849022|ref|YP_006351258.1| - 0.0068 16.3 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849022|ref|YP_006351258.1| - 0.008 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Adhesin_P1 PF03257.13 gi|389849022|ref|YP_006351258.1| - 0.016 15.7 2.4 0.26 11.9 0.2 2.8 2 0 0 2 2 2 0 Mycoplasma adhesin P1 Binary_toxB PF03495.14 gi|389849022|ref|YP_006351258.1| - 0.018 15.2 11.2 1.4 9.2 0.3 4.3 3 1 0 4 4 4 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain Fe_dep_repress PF01325.19 gi|389849022|ref|YP_006351258.1| - 0.082 13.1 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3489 PF11994.8 gi|389849022|ref|YP_006351258.1| - 0.14 12.3 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) GvpO PF05800.11 gi|389849022|ref|YP_006351258.1| - 0.15 12.1 0.5 0.29 11.1 0.5 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpO HTH_5 PF01022.20 gi|389849023|ref|YP_006351259.1| - 0.072 13.0 0.2 51 3.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Imm6 PF14434.6 gi|389849023|ref|YP_006351259.1| - 0.12 12.3 0.7 0.7 9.8 0.1 2.3 1 1 0 2 2 2 0 Immunity protein Imm6 GFO_IDH_MocA PF01408.22 gi|389849024|ref|YP_006351260.1| - 1.6e-24 87.0 0.1 2.8e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|389849024|ref|YP_006351260.1| - 4.5e-06 26.9 0.0 9.6e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|389849024|ref|YP_006351260.1| - 5.4e-06 26.9 0.0 1.1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|389849024|ref|YP_006351260.1| - 9.3e-06 25.1 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|389849024|ref|YP_006351260.1| - 0.00027 20.6 0.2 0.0005 19.7 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|389849024|ref|YP_006351260.1| - 0.00041 21.0 0.1 0.00097 19.8 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|389849024|ref|YP_006351260.1| - 0.029 14.8 0.1 0.082 13.3 0.1 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|389849024|ref|YP_006351260.1| - 0.029 13.3 0.2 0.087 11.7 0.0 1.7 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family DapB_N PF01113.20 gi|389849024|ref|YP_006351260.1| - 0.032 14.4 0.7 0.091 12.9 0.2 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Peptidase_A2B PF12384.8 gi|389849024|ref|YP_006351260.1| - 0.096 12.2 0.6 0.85 9.1 0.0 2.2 1 1 0 2 2 2 0 Ty3 transposon peptidase DegT_DnrJ_EryC1 PF01041.17 gi|389849025|ref|YP_006351261.1| - 7e-121 403.9 0.0 7.9e-121 403.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|389849025|ref|YP_006351261.1| - 7.4e-09 35.3 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|389849025|ref|YP_006351261.1| - 1e-08 34.8 0.0 1.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|389849025|ref|YP_006351261.1| - 1.7e-05 24.0 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|389849025|ref|YP_006351261.1| - 0.085 11.4 0.0 0.53 8.8 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|389849025|ref|YP_006351261.1| - 0.13 11.0 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DprA_WH PF17782.1 gi|389849027|ref|YP_006351263.1| - 1.1e-05 25.5 0.4 1.3e-05 25.2 0.4 1.2 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|389849027|ref|YP_006351263.1| - 1.1e-05 25.2 0.2 1.5e-05 24.7 0.2 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849027|ref|YP_006351263.1| - 0.0015 18.1 0.3 0.002 17.6 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849027|ref|YP_006351263.1| - 0.0022 17.9 0.2 0.003 17.4 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849027|ref|YP_006351263.1| - 0.012 15.6 0.2 0.014 15.3 0.2 1.1 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|389849027|ref|YP_006351263.1| - 0.035 13.9 0.8 0.055 13.3 0.8 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|389849027|ref|YP_006351263.1| - 0.042 13.7 0.2 0.056 13.3 0.2 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|389849027|ref|YP_006351263.1| - 0.19 12.1 0.0 0.26 11.7 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_10 PF04967.12 gi|389849028|ref|YP_006351264.1| - 2e-15 56.3 0.0 3.2e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|389849028|ref|YP_006351264.1| - 0.0039 17.0 0.1 0.0092 15.9 0.0 1.7 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|389849028|ref|YP_006351264.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|389849028|ref|YP_006351264.1| - 0.013 15.0 0.1 0.031 13.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849028|ref|YP_006351264.1| - 0.16 11.9 0.0 0.47 10.4 0.0 1.8 1 0 0 1 1 1 0 MarR family SprT-like PF10263.9 gi|389849029|ref|YP_006351265.1| - 9.3e-08 31.9 0.0 1.7e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 SprT-like family CbiQ PF02361.16 gi|389849030|ref|YP_006351266.1| - 0.023 14.3 1.5 0.022 14.4 1.5 1.0 1 0 0 1 1 1 0 Cobalt transport protein Phage_holin_3_6 PF07332.11 gi|389849030|ref|YP_006351266.1| - 0.062 13.3 2.1 0.066 13.3 2.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III AAA_23 PF13476.6 gi|389849031|ref|YP_006351267.1| - 1.2e-09 39.0 19.3 1.2e-09 39.0 19.3 4.2 2 2 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|389849031|ref|YP_006351267.1| - 0.0002 21.2 11.4 0.0033 17.2 11.4 2.9 1 1 0 1 1 1 1 AAA ATPase domain CHASE6_C PF17150.4 gi|389849031|ref|YP_006351267.1| - 0.0011 19.5 7.4 0.0051 17.5 0.7 3.8 3 1 0 3 3 2 1 C-terminal domain of two-partite extracellular sensor domain Fib_alpha PF08702.10 gi|389849031|ref|YP_006351267.1| - 0.0012 19.0 31.3 0.061 13.5 3.0 4.1 2 2 1 4 4 4 2 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|389849031|ref|YP_006351267.1| - 0.0015 17.3 12.1 0.0015 17.3 12.1 3.1 2 1 0 2 2 2 1 AAA domain ABC_tran_CTD PF16326.5 gi|389849031|ref|YP_006351267.1| - 0.0018 18.5 12.3 0.0018 18.5 12.3 7.7 2 2 5 7 7 7 2 ABC transporter C-terminal domain NPV_P10 PF05531.12 gi|389849031|ref|YP_006351267.1| - 0.0026 18.2 25.5 0.64 10.5 0.4 6.6 3 2 2 5 5 4 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|389849031|ref|YP_006351267.1| - 0.0058 15.6 62.5 0.039 12.8 21.3 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|389849031|ref|YP_006351267.1| - 0.0089 16.3 34.4 0.51 10.7 3.1 6.2 2 2 3 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.7 gi|389849031|ref|YP_006351267.1| - 0.0095 15.5 55.3 0.073 12.6 20.8 3.3 2 1 1 3 3 3 2 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.22 gi|389849031|ref|YP_006351267.1| - 0.0099 16.1 53.2 0.057 13.7 9.6 5.3 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|389849031|ref|YP_006351267.1| - 0.014 15.4 31.6 0.72 9.9 1.0 5.1 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|389849031|ref|YP_006351267.1| - 0.019 14.0 45.8 0.072 12.2 9.7 3.6 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 zf-CpG_bind_C PF12269.8 gi|389849031|ref|YP_006351267.1| - 0.019 14.7 0.5 0.019 14.7 0.5 4.5 1 1 4 6 6 6 0 CpG binding protein zinc finger C terminal domain HemX PF04375.14 gi|389849031|ref|YP_006351267.1| - 0.039 13.2 35.5 0.13 11.5 4.8 4.1 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase GAS PF13851.6 gi|389849031|ref|YP_006351267.1| - 0.041 13.2 51.7 0.13 11.6 11.3 4.1 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding APG6_N PF17675.1 gi|389849031|ref|YP_006351267.1| - 0.1 13.1 78.7 0.47 11.0 27.7 5.2 2 2 2 4 4 4 0 Apg6 coiled-coil region Snapin_Pallidin PF14712.6 gi|389849031|ref|YP_006351267.1| - 0.12 12.8 34.4 0.52 10.8 5.6 5.5 2 2 3 5 5 5 0 Snapin/Pallidin SMC_N PF02463.19 gi|389849031|ref|YP_006351267.1| - 0.15 11.4 0.0 0.15 11.4 0.0 2.8 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain Rop PF01815.16 gi|389849031|ref|YP_006351267.1| - 0.16 11.9 0.1 0.16 11.9 0.1 4.3 6 0 0 6 6 3 0 Rop protein Baculo_PEP_C PF04513.12 gi|389849031|ref|YP_006351267.1| - 0.18 11.9 18.3 0.46 10.5 5.0 4.7 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4988 PF16378.5 gi|389849031|ref|YP_006351267.1| - 0.32 10.6 18.8 6 6.5 0.1 5.9 5 1 1 6 6 6 0 Domain of unknown function MAD PF05557.13 gi|389849031|ref|YP_006351267.1| - 0.37 9.1 52.1 0.74 8.1 25.1 2.2 2 0 0 2 2 2 0 Mitotic checkpoint protein OmpH PF03938.14 gi|389849031|ref|YP_006351267.1| - 0.45 10.9 45.7 2 8.8 9.1 4.4 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) TPR_MLP1_2 PF07926.12 gi|389849031|ref|YP_006351267.1| - 0.67 10.0 60.7 0.15 12.1 18.5 4.6 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein XhlA PF10779.9 gi|389849031|ref|YP_006351267.1| - 0.83 9.9 48.3 0.059 13.6 7.1 6.8 4 3 3 7 7 6 0 Haemolysin XhlA Perilipin PF03036.16 gi|389849031|ref|YP_006351267.1| - 1.3 8.0 19.2 0.01 14.9 5.0 2.2 2 0 0 2 2 2 0 Perilipin family DUF4407 PF14362.6 gi|389849031|ref|YP_006351267.1| - 1.9 7.7 48.8 2.8 7.2 7.7 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Occludin_ELL PF07303.13 gi|389849031|ref|YP_006351267.1| - 2.3 9.0 28.1 1.1 10.0 1.3 5.1 2 2 3 5 5 5 0 Occludin homology domain DUF3584 PF12128.8 gi|389849031|ref|YP_006351267.1| - 2.4 5.6 60.4 0.16 9.5 23.9 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF3584) PLAC9 PF15205.6 gi|389849031|ref|YP_006351267.1| - 3.6 8.1 6.9 23 5.5 0.0 4.2 4 0 0 4 4 3 0 Placenta-specific protein 9 CENP-F_leu_zip PF10473.9 gi|389849031|ref|YP_006351267.1| - 3.7 7.6 66.4 87 3.1 9.1 4.7 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|389849031|ref|YP_006351267.1| - 4.9 5.6 39.3 0.44 9.1 5.7 4.1 1 1 3 4 4 4 0 Flagellar Assembly Protein A TMF_TATA_bd PF12325.8 gi|389849031|ref|YP_006351267.1| - 5.2 7.3 65.6 0.93 9.7 6.9 5.6 2 2 2 5 5 5 0 TATA element modulatory factor 1 TATA binding DUF3450 PF11932.8 gi|389849031|ref|YP_006351267.1| - 5.6 6.2 51.8 2.8 7.2 8.6 4.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Tropomyosin_1 PF12718.7 gi|389849031|ref|YP_006351267.1| - 7 6.8 74.0 12 6.1 0.4 4.5 2 2 2 4 4 4 0 Tropomyosin like Syntaxin-6_N PF09177.11 gi|389849031|ref|YP_006351267.1| - 8.1 7.1 48.7 3 8.4 8.6 5.7 2 2 3 5 5 5 0 Syntaxin 6, N-terminal DUF2408 PF10303.9 gi|389849031|ref|YP_006351267.1| - 8.8 6.9 36.3 0.1 13.2 8.6 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2408) LXG PF04740.12 gi|389849031|ref|YP_006351267.1| - 9.7 5.8 26.2 1.4 8.6 9.6 4.3 2 2 2 4 4 4 0 LXG domain of WXG superfamily Usp PF00582.26 gi|389849033|ref|YP_006351269.1| - 3e-07 31.0 14.0 4.7e-05 23.9 0.4 3.2 2 1 1 3 3 3 2 Universal stress protein family AA_permease_2 PF13520.6 gi|389849034|ref|YP_006351270.1| - 3.2e-48 164.6 42.8 3.8e-48 164.4 42.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389849034|ref|YP_006351270.1| - 6.4e-42 143.7 41.3 7.6e-42 143.5 41.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|389849034|ref|YP_006351270.1| - 0.0045 17.0 1.9 0.0045 17.0 1.9 3.1 3 0 0 3 3 3 1 C-terminus of AA_permease Spore_permease PF03845.13 gi|389849034|ref|YP_006351270.1| - 0.035 13.0 20.3 0.1 11.4 14.9 3.5 2 1 0 2 2 2 0 Spore germination protein Phage_integrase PF00589.22 gi|389849035|ref|YP_006351271.1| - 3.8e-08 33.3 0.0 6.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Crp PF00325.20 gi|389849035|ref|YP_006351271.1| - 0.078 12.6 0.1 0.22 11.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Phage_int_SAM_1 PF02899.17 gi|389849035|ref|YP_006351271.1| - 0.18 12.1 2.5 0.37 11.1 0.4 2.5 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain tRNA-synt_1b PF00579.25 gi|389849036|ref|YP_006351272.1| - 3.5e-24 85.7 0.0 2e-23 83.1 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DDE_Tnp_1 PF01609.21 gi|389849037|ref|YP_006351273.1| - 7.9e-07 28.9 3.2 1.3e-05 24.9 3.2 2.3 1 1 0 1 1 1 1 Transposase DDE domain SnoaL PF07366.12 gi|389849038|ref|YP_006351274.1| - 2e-31 108.4 0.0 2.4e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|389849038|ref|YP_006351274.1| - 4.4e-24 85.1 0.0 5.6e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|389849038|ref|YP_006351274.1| - 2.3e-06 28.0 0.0 3.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|389849038|ref|YP_006351274.1| - 0.00082 19.5 0.0 0.0012 19.0 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain HTH_10 PF04967.12 gi|389849039|ref|YP_006351275.1| - 1.7e-12 46.9 0.0 3.3e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|389849039|ref|YP_006351275.1| - 0.0074 16.1 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849039|ref|YP_006351275.1| - 0.032 14.1 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF4249 PF14054.6 gi|389849039|ref|YP_006351275.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) BAT PF15915.5 gi|389849039|ref|YP_006351275.1| - 0.056 13.3 0.6 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 GAF and HTH_10 associated domain UPF0122 PF04297.14 gi|389849039|ref|YP_006351275.1| - 0.058 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|389849039|ref|YP_006351275.1| - 0.091 12.7 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 MarR family Copper-bind PF00127.20 gi|389849041|ref|YP_006351277.1| - 5.5e-25 87.7 0.0 2.1e-11 44.1 0.0 2.9 2 1 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389849041|ref|YP_006351277.1| - 1.2e-05 25.3 0.0 0.083 13.0 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|389849041|ref|YP_006351277.1| - 0.013 15.4 0.6 0.024 14.5 0.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.20 gi|389849041|ref|YP_006351277.1| - 0.24 11.3 8.8 0.95 9.4 0.1 3.3 2 2 0 2 2 2 0 PKD domain NAD_synthase PF02540.17 gi|389849042|ref|YP_006351278.1| - 3.1e-44 150.9 0.0 4.9e-44 150.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|389849042|ref|YP_006351278.1| - 2e-28 99.5 0.0 1e-27 97.1 0.0 1.9 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase Corona_nucleoca PF00937.18 gi|389849042|ref|YP_006351278.1| - 0.14 11.2 1.6 0.21 10.6 1.6 1.2 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Peripla_BP_2 PF01497.18 gi|389849043|ref|YP_006351279.1| - 1.5e-17 64.0 0.0 2.4e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein HTH_AsnC-type PF13404.6 gi|389849044|ref|YP_006351280.1| - 5.8e-14 51.6 0.6 9.3e-14 51.0 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389849044|ref|YP_006351280.1| - 1.9e-13 49.7 1.1 1.1e-12 47.3 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389849044|ref|YP_006351280.1| - 0.00014 21.8 0.2 0.00025 20.9 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389849044|ref|YP_006351280.1| - 0.00024 21.1 0.9 0.0014 18.6 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849044|ref|YP_006351280.1| - 0.0028 17.6 0.3 0.0088 16.0 0.2 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|389849044|ref|YP_006351280.1| - 0.0031 17.4 0.0 0.048 13.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389849044|ref|YP_006351280.1| - 0.0036 17.1 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389849044|ref|YP_006351280.1| - 0.0083 16.0 0.1 0.019 14.8 0.1 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_28 PF13518.6 gi|389849044|ref|YP_006351280.1| - 0.013 15.6 0.1 0.022 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|389849044|ref|YP_006351280.1| - 0.017 15.0 0.1 0.049 13.5 0.1 1.8 2 0 0 2 2 1 0 MarR family HTH_7 PF02796.15 gi|389849044|ref|YP_006351280.1| - 0.018 15.1 0.0 0.042 13.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|389849044|ref|YP_006351280.1| - 0.02 14.6 0.2 0.046 13.5 0.2 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|389849044|ref|YP_006351280.1| - 0.023 14.5 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|389849044|ref|YP_006351280.1| - 0.03 14.2 0.1 0.09 12.7 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AsnC_trans_reg PF01037.21 gi|389849044|ref|YP_006351280.1| - 0.043 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Put_DNA-bind_N PF06971.13 gi|389849044|ref|YP_006351280.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Rrf2 PF02082.20 gi|389849044|ref|YP_006351280.1| - 0.076 13.4 0.2 1.1 9.6 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_8 PF02954.19 gi|389849044|ref|YP_006351280.1| - 0.084 12.7 0.6 0.17 11.7 0.6 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF1655 PF07868.11 gi|389849044|ref|YP_006351280.1| - 0.098 12.7 0.1 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1655) HTH_3 PF01381.22 gi|389849044|ref|YP_006351280.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Phage_rep_O PF04492.13 gi|389849044|ref|YP_006351280.1| - 0.13 12.8 0.0 0.64 10.6 0.0 2.0 1 1 1 2 2 2 0 Bacteriophage replication protein O Citrate_synt PF00285.21 gi|389849045|ref|YP_006351281.1| - 9.5e-110 367.0 0.0 1.1e-109 366.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain PKD PF00801.20 gi|389849046|ref|YP_006351282.1| - 6.2e-21 74.0 7.5 5.7e-11 42.1 0.8 3.1 3 0 0 3 3 3 2 PKD domain BiPBP_C PF06832.12 gi|389849046|ref|YP_006351282.1| - 0.00014 21.8 0.0 0.56 10.3 0.0 2.4 2 0 0 2 2 2 2 Penicillin-Binding Protein C-terminus Family REJ PF02010.15 gi|389849046|ref|YP_006351282.1| - 0.00033 19.6 11.4 0.0061 15.4 0.7 3.6 2 2 1 4 4 4 3 REJ domain HYR PF02494.16 gi|389849046|ref|YP_006351282.1| - 0.0019 18.5 2.4 0.05 13.9 0.2 2.9 2 0 0 2 2 2 1 HYR domain TAT_signal PF10518.9 gi|389849046|ref|YP_006351282.1| - 0.061 13.2 0.5 0.061 13.2 0.5 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TSP_3 PF02412.18 gi|389849046|ref|YP_006351282.1| - 0.26 11.0 5.0 4.5 7.0 1.0 3.0 2 0 0 2 2 2 0 Thrombospondin type 3 repeat PEMT PF04191.13 gi|389849047|ref|YP_006351283.1| - 2.3e-17 63.3 0.5 2.3e-17 63.3 0.5 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|389849047|ref|YP_006351283.1| - 1.8e-05 24.4 0.1 2.5e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.14 gi|389849047|ref|YP_006351283.1| - 7e-05 23.2 0.4 0.00033 21.0 0.1 2.1 2 1 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|389849047|ref|YP_006351283.1| - 0.00035 19.4 0.1 0.00053 18.9 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family NnrU PF07298.11 gi|389849047|ref|YP_006351283.1| - 0.0011 18.5 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 NnrU protein Steroid_dh PF02544.16 gi|389849047|ref|YP_006351283.1| - 0.016 15.2 0.3 0.022 14.8 0.3 1.2 1 0 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase HTH_10 PF04967.12 gi|389849048|ref|YP_006351284.1| - 5.7e-16 58.0 0.0 8.7e-16 57.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|389849048|ref|YP_006351284.1| - 0.0076 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2222 PF09984.9 gi|389849048|ref|YP_006351284.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABC_tran PF00005.27 gi|389849049|ref|YP_006351285.1| - 6.1e-32 111.0 0.0 1e-31 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849049|ref|YP_006351285.1| - 4.8e-14 52.9 0.2 9e-08 32.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389849049|ref|YP_006351285.1| - 3.8e-06 27.5 0.1 1e-05 26.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|389849049|ref|YP_006351285.1| - 4e-05 23.5 0.0 0.064 13.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|389849049|ref|YP_006351285.1| - 0.00072 19.7 0.0 0.0041 17.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389849049|ref|YP_006351285.1| - 0.0011 18.5 0.0 0.031 13.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389849049|ref|YP_006351285.1| - 0.0029 17.3 0.1 0.0062 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849049|ref|YP_006351285.1| - 0.0086 16.5 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|389849049|ref|YP_006351285.1| - 0.021 14.5 0.0 0.047 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389849049|ref|YP_006351285.1| - 0.035 14.0 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase MukB PF04310.12 gi|389849049|ref|YP_006351285.1| - 0.045 13.6 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal MMR_HSR1 PF01926.23 gi|389849049|ref|YP_006351285.1| - 0.065 13.3 0.1 0.12 12.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|389849049|ref|YP_006351285.1| - 0.11 12.8 0.1 0.62 10.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389849049|ref|YP_006351285.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_27 PF13514.6 gi|389849049|ref|YP_006351285.1| - 0.14 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389849049|ref|YP_006351285.1| - 0.18 10.4 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|389849050|ref|YP_006351286.1| - 0.00016 20.9 12.1 0.00016 20.9 12.1 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389849050|ref|YP_006351286.1| - 1.1 8.7 12.0 0.051 13.1 5.0 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein Bac_luciferase PF00296.20 gi|389849051|ref|YP_006351287.1| - 5.1e-34 118.1 5.3 6.3e-34 117.8 5.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Na_H_antiporter PF03553.14 gi|389849052|ref|YP_006351288.1| - 4.9e-58 196.8 44.8 1.8e-52 178.5 24.0 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family ELFV_dehydrog PF00208.21 gi|389849054|ref|YP_006351290.1| - 6.7e-69 232.3 0.0 9.9e-69 231.7 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|389849054|ref|YP_006351290.1| - 5.7e-56 187.9 0.0 1.1e-55 187.1 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|389849054|ref|YP_006351290.1| - 0.00046 19.6 0.0 0.0012 18.3 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Geminin PF07412.12 gi|389849054|ref|YP_006351290.1| - 0.033 13.9 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Geminin Mrr_N PF14338.6 gi|389849055|ref|YP_006351291.1| - 0.0018 18.4 0.0 0.0021 18.1 0.0 1.1 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_10 PF04967.12 gi|389849056|ref|YP_006351292.1| - 3.8e-17 61.8 0.1 5.9e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389849056|ref|YP_006351292.1| - 6.4e-07 29.0 0.1 0.016 14.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389849056|ref|YP_006351292.1| - 0.00011 21.7 0.1 0.00023 20.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|389849056|ref|YP_006351292.1| - 0.0028 17.4 0.1 0.0054 16.5 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|389849056|ref|YP_006351292.1| - 0.0032 17.0 0.0 0.019 14.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|389849056|ref|YP_006351292.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|389849056|ref|YP_006351292.1| - 0.019 15.1 0.1 0.049 13.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|389849056|ref|YP_006351292.1| - 0.036 14.1 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.16 gi|389849056|ref|YP_006351292.1| - 0.042 13.6 0.2 0.36 10.6 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain TetR_N PF00440.23 gi|389849056|ref|YP_006351292.1| - 0.073 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_ECF PF07638.11 gi|389849056|ref|YP_006351292.1| - 0.076 12.9 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 ECF sigma factor HTH_11 PF08279.12 gi|389849056|ref|YP_006351292.1| - 0.16 11.9 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain PfkB PF00294.24 gi|389849057|ref|YP_006351293.1| - 1.7e-52 178.6 0.0 2e-52 178.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldolase PF01081.19 gi|389849058|ref|YP_006351294.1| - 1.1e-41 142.4 2.2 1.3e-41 142.2 2.2 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.17 gi|389849058|ref|YP_006351294.1| - 0.00068 19.0 0.2 0.005 16.2 0.2 2.3 1 1 0 1 1 1 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|389849058|ref|YP_006351294.1| - 0.0059 15.9 9.2 1.4 8.1 0.2 3.0 1 1 2 3 3 3 3 Dihydroorotate dehydrogenase TadZ_N PF16968.5 gi|389849058|ref|YP_006351294.1| - 0.012 15.3 1.4 1.6 8.4 0.1 2.5 2 1 0 2 2 2 0 Pilus assembly protein TadZ N-terminal QRPTase_C PF01729.19 gi|389849058|ref|YP_006351294.1| - 0.042 13.6 0.0 0.39 10.5 0.0 2.2 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.25 gi|389849058|ref|YP_006351294.1| - 0.31 10.0 9.6 0.04 12.9 1.6 2.5 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Ribonuc_L-PSP PF01042.21 gi|389849059|ref|YP_006351295.1| - 3.8e-40 136.7 0.0 4.3e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP adh_short_C2 PF13561.6 gi|389849060|ref|YP_006351296.1| - 7.6e-62 208.9 0.1 9e-62 208.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849060|ref|YP_006351296.1| - 1.4e-48 165.0 0.1 1.6e-48 164.7 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849060|ref|YP_006351296.1| - 5.2e-10 39.5 0.1 7.3e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849060|ref|YP_006351296.1| - 0.00015 21.3 0.1 0.00046 19.7 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|389849060|ref|YP_006351296.1| - 0.0017 18.3 0.2 0.0025 17.7 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|389849060|ref|YP_006351296.1| - 0.098 12.5 0.1 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MR_MLE_C PF13378.6 gi|389849061|ref|YP_006351297.1| - 1.7e-47 161.8 0.0 2.6e-47 161.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389849061|ref|YP_006351297.1| - 1.5e-16 60.6 0.0 3.4e-16 59.5 0.0 1.6 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PmbA_TldD PF01523.16 gi|389849061|ref|YP_006351297.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative modulator of DNA gyrase GHL10 PF02638.15 gi|389849062|ref|YP_006351298.1| - 4.9e-05 22.6 0.0 8.5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 DUF5036 PF16439.5 gi|389849062|ref|YP_006351298.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) BPD_transp_1 PF00528.22 gi|389849063|ref|YP_006351299.1| - 3.9e-18 65.8 17.5 3.9e-18 65.8 17.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UL42 PF17638.2 gi|389849063|ref|YP_006351299.1| - 6.8 6.7 9.3 4.9 7.1 0.4 2.9 2 1 1 3 3 3 0 HCMV UL42 BPD_transp_1 PF00528.22 gi|389849064|ref|YP_006351300.1| - 3.3e-22 79.1 14.6 6.2e-22 78.2 14.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|389849065|ref|YP_006351301.1| - 1.5e-44 153.2 0.4 2.3e-44 152.7 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|389849065|ref|YP_006351301.1| - 6.8e-39 134.4 0.1 1.1e-38 133.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|389849065|ref|YP_006351301.1| - 9.6e-05 21.9 0.0 0.14 11.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389849065|ref|YP_006351301.1| - 0.0031 17.3 0.0 0.0053 16.5 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389849065|ref|YP_006351301.1| - 0.14 12.1 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Creatininase PF02633.14 gi|389849066|ref|YP_006351302.1| - 9.7e-60 202.0 0.0 1.1e-59 201.8 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.27 gi|389849067|ref|YP_006351303.1| - 1.9e-31 109.4 0.0 3.3e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|389849067|ref|YP_006351303.1| - 6.1e-09 36.6 0.0 5.7e-08 33.5 0.0 2.8 4 0 0 4 4 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|389849067|ref|YP_006351303.1| - 3.5e-08 33.5 0.1 1.4e-07 31.6 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|389849067|ref|YP_006351303.1| - 1.1e-06 28.7 0.0 0.013 15.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849067|ref|YP_006351303.1| - 1.2e-05 24.8 0.1 2.8e-05 23.7 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|389849067|ref|YP_006351303.1| - 0.00029 20.8 0.0 0.00046 20.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|389849067|ref|YP_006351303.1| - 0.0008 19.8 0.2 0.0067 16.9 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|389849067|ref|YP_006351303.1| - 0.00097 19.4 0.1 0.0037 17.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389849067|ref|YP_006351303.1| - 0.0032 17.9 0.4 0.0032 17.9 0.4 2.0 2 1 0 2 2 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|389849067|ref|YP_006351303.1| - 0.0036 17.8 2.4 0.12 13.0 0.0 3.9 5 0 0 5 5 3 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|389849067|ref|YP_006351303.1| - 0.0074 16.2 0.9 0.014 15.4 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|389849067|ref|YP_006351303.1| - 0.0084 15.7 0.1 0.53 9.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389849067|ref|YP_006351303.1| - 0.016 14.9 0.1 0.035 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389849067|ref|YP_006351303.1| - 0.026 14.7 0.3 0.054 13.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389849067|ref|YP_006351303.1| - 0.036 14.0 0.3 2.9 7.8 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|389849067|ref|YP_006351303.1| - 0.091 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|389849067|ref|YP_006351303.1| - 0.12 11.1 0.1 0.39 9.5 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|389849067|ref|YP_006351303.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|389849067|ref|YP_006351303.1| - 0.21 11.8 1.6 0.32 11.2 0.3 1.9 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|389849067|ref|YP_006351303.1| - 0.22 11.9 0.1 0.96 9.9 0.1 2.1 2 1 0 2 2 2 0 RNA helicase IclR PF01614.18 gi|389849069|ref|YP_006351305.1| - 4.5e-33 113.8 0.0 7.9e-33 113.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389849069|ref|YP_006351305.1| - 3.7e-09 36.2 0.0 4.3e-08 32.8 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389849069|ref|YP_006351305.1| - 1.7e-06 27.8 0.0 5.5e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|389849069|ref|YP_006351305.1| - 8.3e-06 25.6 0.0 1.9e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389849069|ref|YP_006351305.1| - 0.00035 20.6 0.0 0.0013 18.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389849069|ref|YP_006351305.1| - 0.00099 19.0 0.0 0.0031 17.4 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|389849069|ref|YP_006351305.1| - 0.002 18.0 0.0 0.053 13.4 0.0 2.9 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 gi|389849069|ref|YP_006351305.1| - 0.013 15.0 0.0 0.044 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|389849069|ref|YP_006351305.1| - 0.091 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|389849069|ref|YP_006351305.1| - 0.097 13.0 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.6 gi|389849069|ref|YP_006351305.1| - 0.13 12.5 0.0 0.35 11.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Abhydrolase_1 PF00561.20 gi|389849070|ref|YP_006351306.1| - 2.4e-20 73.3 0.0 2.7e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389849070|ref|YP_006351306.1| - 6e-17 63.0 1.1 7.4e-17 62.7 1.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389849070|ref|YP_006351306.1| - 2.8e-15 56.2 0.0 3.6e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|389849070|ref|YP_006351306.1| - 0.0087 15.5 0.0 0.048 13.1 0.0 1.8 1 1 1 2 2 2 1 Prolyl oligopeptidase family Esterase PF00756.20 gi|389849070|ref|YP_006351306.1| - 0.019 14.6 0.1 0.024 14.3 0.1 1.4 1 1 0 1 1 1 0 Putative esterase Thioesterase PF00975.20 gi|389849070|ref|YP_006351306.1| - 0.092 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain PGAP1 PF07819.13 gi|389849070|ref|YP_006351306.1| - 0.17 11.6 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Abhydrolase_6 PF12697.7 gi|389849071|ref|YP_006351307.1| - 0.0008 20.1 0.0 0.00084 20.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389849071|ref|YP_006351307.1| - 0.02 14.6 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389849071|ref|YP_006351307.1| - 0.036 14.2 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein PAS_9 PF13426.7 gi|389849072|ref|YP_006351308.1| - 3e-33 114.2 0.0 6.3e-20 71.4 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|389849072|ref|YP_006351308.1| - 4.6e-27 94.1 0.0 1.5e-14 54.0 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|389849072|ref|YP_006351308.1| - 8.3e-27 93.4 0.0 3.8e-14 52.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|389849072|ref|YP_006351308.1| - 9e-27 93.5 1.2 2.6e-12 47.0 0.0 3.0 3 0 0 3 3 2 2 PAS fold HATPase_c PF02518.26 gi|389849072|ref|YP_006351308.1| - 9.8e-15 55.0 0.0 4.3e-13 49.7 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|389849072|ref|YP_006351308.1| - 1.2e-11 45.1 0.0 2.5e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|389849072|ref|YP_006351308.1| - 1.4e-09 38.4 0.1 2.5e-08 34.3 0.0 2.7 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|389849072|ref|YP_006351308.1| - 9.4e-08 32.1 0.0 2.9e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|389849072|ref|YP_006351308.1| - 1.3e-07 31.5 0.0 0.0015 18.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain GAF PF01590.26 gi|389849072|ref|YP_006351308.1| - 2.4e-07 31.5 0.1 1.3e-06 29.1 0.0 2.3 3 0 0 3 3 2 1 GAF domain HATPase_c_3 PF13589.6 gi|389849072|ref|YP_006351308.1| - 8.6e-05 22.4 0.0 0.00018 21.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389849072|ref|YP_006351308.1| - 0.0011 19.0 1.9 0.0011 19.0 1.9 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|389849072|ref|YP_006351308.1| - 0.069 12.7 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|389849072|ref|YP_006351308.1| - 0.1 12.4 0.1 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain BRD4_CDT PF17105.5 gi|389849072|ref|YP_006351308.1| - 4.9 6.8 7.0 27 4.4 1.5 2.8 2 0 0 2 2 2 0 C-terminal domain of bromodomain protein 4 Hydantoinase_B PF02538.14 gi|389849073|ref|YP_006351309.1| - 8.7e-212 704.1 1.7 9.8e-212 703.9 1.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|389849074|ref|YP_006351310.1| - 9.4e-95 317.2 13.1 1.3e-94 316.7 8.0 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389849074|ref|YP_006351310.1| - 9e-51 172.1 0.5 9e-51 172.1 0.5 2.4 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|389849074|ref|YP_006351310.1| - 0.00026 19.7 5.2 0.011 14.3 0.8 2.3 2 0 0 2 2 2 2 MutL protein EutA PF06277.11 gi|389849074|ref|YP_006351310.1| - 0.014 14.3 0.4 0.026 13.4 0.4 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA BcrAD_BadFG PF01869.20 gi|389849074|ref|YP_006351310.1| - 0.019 14.5 0.4 0.019 14.5 0.4 2.7 2 1 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family Amdase PF17645.1 gi|389849074|ref|YP_006351310.1| - 0.066 12.8 1.0 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 Arylmalonate decarboxylase Pilus_CpaD PF09476.10 gi|389849074|ref|YP_006351310.1| - 0.1 12.3 1.5 3.1 7.5 0.1 2.7 3 0 0 3 3 3 0 Pilus biogenesis CpaD protein (pilus_cpaD) Nramp PF01566.18 gi|389849075|ref|YP_006351311.1| - 3.4e-95 319.0 24.0 4.4e-95 318.7 24.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PDGLE PF13190.6 gi|389849075|ref|YP_006351311.1| - 0.12 12.3 3.8 0.43 10.5 0.1 3.2 2 1 0 2 2 2 0 PDGLE domain RHH_1 PF01402.21 gi|389849078|ref|YP_006351314.1| - 6.2e-07 29.1 0.0 1.5e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|389849078|ref|YP_006351314.1| - 2.1e-05 24.4 0.0 3.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain PUB PF09409.10 gi|389849078|ref|YP_006351314.1| - 0.057 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 PUB domain TFIID_NTD2 PF04494.15 gi|389849078|ref|YP_006351314.1| - 0.077 13.2 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit, NTD2 domain Med13_C PF06333.12 gi|389849079|ref|YP_006351315.1| - 0.19 11.0 2.3 0.23 10.7 2.3 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Trypan_PARP PF05887.11 gi|389849079|ref|YP_006351315.1| - 0.23 11.4 3.1 0.43 10.6 3.1 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF1387 PF07139.11 gi|389849079|ref|YP_006351315.1| - 0.81 9.4 4.3 1.2 8.8 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) HHH_2 PF12826.7 gi|389849080|ref|YP_006351316.1| - 0.002 18.2 0.0 0.0044 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389849080|ref|YP_006351316.1| - 0.0071 16.9 0.0 0.013 16.1 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF2543 PF10820.8 gi|389849080|ref|YP_006351316.1| - 0.01 16.0 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) Rhamno_transf PF11316.8 gi|389849081|ref|YP_006351317.1| - 0.089 12.2 0.1 0.089 12.2 0.1 1.2 1 0 0 1 1 1 0 Putative rhamnosyl transferase GFO_IDH_MocA PF01408.22 gi|389849083|ref|YP_006351319.1| - 3.6e-26 92.3 0.1 1e-25 90.9 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|389849083|ref|YP_006351319.1| - 1.3e-08 34.8 0.0 2.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|389849083|ref|YP_006351319.1| - 0.009 16.7 0.0 0.019 15.6 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 gi|389849083|ref|YP_006351319.1| - 0.017 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|389849083|ref|YP_006351319.1| - 0.018 15.3 0.0 0.037 14.4 0.0 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|389849083|ref|YP_006351319.1| - 0.042 14.3 0.1 0.093 13.2 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain Rossmann-like PF10727.9 gi|389849083|ref|YP_006351319.1| - 0.099 12.5 0.3 0.24 11.2 0.2 1.8 1 1 0 1 1 1 0 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|389849083|ref|YP_006351319.1| - 0.11 11.8 0.1 0.34 10.3 0.0 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF362 PF04015.12 gi|389849084|ref|YP_006351320.1| - 9e-09 35.9 0.3 1.6e-08 35.0 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Epimerase PF01370.21 gi|389849085|ref|YP_006351321.1| - 3.8e-33 114.9 0.0 5.4e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389849085|ref|YP_006351321.1| - 1.5e-24 86.5 0.0 2.2e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|389849085|ref|YP_006351321.1| - 6.6e-22 78.3 0.0 1.5e-21 77.2 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|389849085|ref|YP_006351321.1| - 1.4e-17 64.1 0.4 2e-17 63.7 0.4 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|389849085|ref|YP_006351321.1| - 2e-13 50.1 1.2 1.1e-08 34.6 0.1 2.8 1 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|389849085|ref|YP_006351321.1| - 7.7e-13 48.2 0.1 1.4e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|389849085|ref|YP_006351321.1| - 7.6e-09 35.1 0.1 5.2e-08 32.4 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|389849085|ref|YP_006351321.1| - 3.9e-05 23.3 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|389849085|ref|YP_006351321.1| - 0.00074 19.0 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849085|ref|YP_006351321.1| - 0.00084 19.3 0.7 0.0047 16.9 0.7 2.2 1 1 0 1 1 1 1 KR domain CoA_binding_2 PF13380.6 gi|389849085|ref|YP_006351321.1| - 0.037 14.5 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain ATPgrasp_Ter PF15632.6 gi|389849086|ref|YP_006351322.1| - 1.9e-06 27.7 0.0 3.2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|389849086|ref|YP_006351322.1| - 1.4e-05 25.2 0.0 4.2e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|389849086|ref|YP_006351322.1| - 0.00098 18.7 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TAT_signal PF10518.9 gi|389849087|ref|YP_006351323.1| - 0.059 13.2 0.1 0.098 12.5 0.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|389849087|ref|YP_006351323.1| - 0.2 11.5 9.3 27 4.6 0.9 3.1 1 1 1 2 2 2 0 Right handed beta helix region Glycos_transf_2 PF00535.26 gi|389849089|ref|YP_006351325.1| - 1.2e-22 80.5 0.0 1.8e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|389849089|ref|YP_006351325.1| - 2.8e-06 27.8 0.0 5.4e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849089|ref|YP_006351325.1| - 2e-05 24.6 0.1 4e-05 23.6 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF308 PF03729.13 gi|389849089|ref|YP_006351325.1| - 0.0022 18.3 3.1 0.0087 16.4 1.0 2.2 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) DUF1616 PF07760.11 gi|389849090|ref|YP_006351326.1| - 1.6e-85 287.0 1.4 2.1e-85 286.7 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Transp_cyt_pur PF02133.15 gi|389849090|ref|YP_006351326.1| - 0.00055 18.8 1.0 0.00093 18.1 1.0 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin TAT_signal PF10518.9 gi|389849091|ref|YP_006351327.1| - 0.0012 18.6 1.3 0.0034 17.2 1.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ICAP-1_inte_bdg PF10480.9 gi|389849091|ref|YP_006351327.1| - 1.3 9.0 11.5 5 7.1 0.2 3.7 4 0 0 4 4 4 0 Beta-1 integrin binding protein Polysacc_synt_3 PF13440.6 gi|389849092|ref|YP_006351328.1| - 2.3e-77 260.1 5.8 2.3e-77 260.1 5.8 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|389849092|ref|YP_006351328.1| - 2.7e-35 122.1 10.4 2.7e-35 122.1 10.4 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|389849092|ref|YP_006351328.1| - 3e-11 43.6 11.7 3e-11 43.6 11.7 3.8 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Asn_synthase PF00733.21 gi|389849094|ref|YP_006351330.1| - 1.8e-14 54.2 1.3 2.7e-08 33.9 0.1 3.3 3 1 0 3 3 3 3 Asparagine synthase GATase_7 PF13537.6 gi|389849094|ref|YP_006351330.1| - 0.001 18.9 0.0 0.0038 17.1 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain Nucleolin_bd PF16725.5 gi|389849094|ref|YP_006351330.1| - 0.071 12.8 0.1 0.65 9.7 0.1 2.5 2 0 0 2 2 2 0 Nucleolin binding domain Cation_efflux PF01545.21 gi|389849095|ref|YP_006351331.1| - 0.021 14.5 0.8 0.026 14.2 0.8 1.1 1 0 0 1 1 1 0 Cation efflux family NADH_dh_m_C1 PF15088.6 gi|389849095|ref|YP_006351331.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.6 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF5353 PF17304.2 gi|389849095|ref|YP_006351331.1| - 0.12 12.1 2.1 0.26 11.1 1.8 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5353) HTH_20 PF12840.7 gi|389849096|ref|YP_006351332.1| - 7.8e-11 41.9 0.0 1.2e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389849096|ref|YP_006351332.1| - 6.4e-07 29.1 0.0 1.1e-06 28.3 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849096|ref|YP_006351332.1| - 4.6e-06 26.4 0.0 7.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849096|ref|YP_006351332.1| - 1.6e-05 24.7 0.1 2.2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849096|ref|YP_006351332.1| - 8.9e-05 22.0 0.0 0.00022 20.7 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389849096|ref|YP_006351332.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|389849096|ref|YP_006351332.1| - 0.0002 21.1 0.0 0.00046 20.0 0.0 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.19 gi|389849096|ref|YP_006351332.1| - 0.00078 19.6 0.1 0.00099 19.2 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|389849096|ref|YP_006351332.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849096|ref|YP_006351332.1| - 0.0015 18.3 0.0 0.0034 17.2 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849096|ref|YP_006351332.1| - 0.0035 17.2 0.0 0.0072 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849096|ref|YP_006351332.1| - 0.0036 17.2 0.1 0.0063 16.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family ArsR PF09824.9 gi|389849096|ref|YP_006351332.1| - 0.0067 16.0 0.0 0.0078 15.8 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_36 PF13730.6 gi|389849096|ref|YP_006351332.1| - 0.0085 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1492 PF07374.11 gi|389849096|ref|YP_006351332.1| - 0.012 15.8 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Fe_dep_repress PF01325.19 gi|389849096|ref|YP_006351332.1| - 0.031 14.5 0.2 0.058 13.6 0.2 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|389849096|ref|YP_006351332.1| - 0.048 13.4 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family B-block_TFIIIC PF04182.12 gi|389849096|ref|YP_006351332.1| - 0.053 13.7 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Mga PF05043.13 gi|389849096|ref|YP_006351332.1| - 0.12 13.0 0.1 0.27 11.9 0.0 1.6 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|389849096|ref|YP_006351332.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 LolA_like PF17131.4 gi|389849097|ref|YP_006351333.1| - 6.2e-06 26.1 0.2 1.8e-05 24.6 0.1 1.7 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|389849097|ref|YP_006351333.1| - 0.00034 20.2 0.4 0.0045 16.5 0.0 2.6 3 0 0 3 3 3 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|389849097|ref|YP_006351333.1| - 0.0029 17.0 0.6 0.094 12.1 0.1 2.4 2 0 0 2 2 2 1 Predicted periplasmic protein (DUF2092) DUF1571 PF07608.11 gi|389849097|ref|YP_006351333.1| - 0.023 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) Glycos_transf_1 PF00534.20 gi|389849098|ref|YP_006351334.1| - 2.7e-25 88.9 0.0 4.5e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389849098|ref|YP_006351334.1| - 4.4e-25 88.7 0.1 1e-24 87.5 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389849098|ref|YP_006351334.1| - 7.1e-16 58.7 2.1 4e-15 56.2 2.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389849098|ref|YP_006351334.1| - 9.4e-13 48.9 5.4 3.5e-12 47.1 3.5 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389849098|ref|YP_006351334.1| - 1.8e-10 41.1 0.0 5.6e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|389849098|ref|YP_006351334.1| - 0.0025 17.5 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|389849098|ref|YP_006351334.1| - 0.035 14.1 0.2 0.071 13.1 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|389849099|ref|YP_006351335.1| - 0.0026 16.9 0.0 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_2 PF13524.6 gi|389849099|ref|YP_006351335.1| - 0.022 15.2 0.1 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 YdjM PF04307.14 gi|389849100|ref|YP_006351336.1| - 2.4e-11 43.3 8.4 3.2e-11 42.8 8.4 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Hexapep PF00132.24 gi|389849101|ref|YP_006351337.1| - 1.4e-25 88.0 17.6 4.5e-08 32.5 0.5 5.0 3 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849101|ref|YP_006351337.1| - 1e-17 63.5 13.8 1.2e-05 24.9 0.5 5.7 5 1 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase Cas6b_C PF17262.2 gi|389849101|ref|YP_006351337.1| - 0.15 12.2 0.1 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Cas6b C-terminal domain DegT_DnrJ_EryC1 PF01041.17 gi|389849102|ref|YP_006351338.1| - 2.6e-117 392.1 0.1 3e-117 392.0 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389849102|ref|YP_006351338.1| - 6e-08 32.0 0.0 7.2e-06 25.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389849102|ref|YP_006351338.1| - 6.8e-07 28.8 0.1 1.4e-06 27.8 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|389849102|ref|YP_006351338.1| - 7.9e-06 25.3 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|389849102|ref|YP_006351338.1| - 0.0081 14.7 0.0 0.038 12.5 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.22 gi|389849103|ref|YP_006351339.1| - 3.5e-20 73.0 0.4 7.6e-20 71.9 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|389849103|ref|YP_006351339.1| - 1.7e-05 25.1 0.3 0.0013 19.0 0.4 3.0 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|389849103|ref|YP_006351339.1| - 0.00033 20.7 0.1 0.072 13.1 0.0 2.6 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_3 PF03447.16 gi|389849103|ref|YP_006351339.1| - 0.00041 21.0 0.3 0.04 14.6 0.2 2.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|389849103|ref|YP_006351339.1| - 0.00064 20.3 0.1 0.0066 17.0 0.0 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|389849103|ref|YP_006351339.1| - 0.011 15.8 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|389849103|ref|YP_006351339.1| - 0.011 15.1 0.1 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|389849103|ref|YP_006351339.1| - 0.013 16.2 0.8 0.044 14.5 0.2 2.1 2 0 0 2 2 2 0 CoA binding domain IlvN PF07991.12 gi|389849103|ref|YP_006351339.1| - 0.027 14.0 0.1 0.081 12.5 0.1 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_11 PF14833.6 gi|389849103|ref|YP_006351339.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CBM60 PF16841.5 gi|389849103|ref|YP_006351339.1| - 0.061 13.8 1.3 0.089 13.2 0.1 1.8 2 0 0 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding Semialdhyde_dh PF01118.24 gi|389849103|ref|YP_006351339.1| - 0.087 13.3 0.1 0.87 10.0 0.1 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|389849104|ref|YP_006351340.1| - 7.5e-42 143.0 0.1 1.3e-41 142.2 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849104|ref|YP_006351340.1| - 1.1e-21 76.8 0.0 1.9e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849104|ref|YP_006351340.1| - 9.6e-16 58.1 0.0 2.4e-15 56.8 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|389849104|ref|YP_006351340.1| - 2.3e-05 23.9 0.0 0.021 14.2 0.0 3.2 3 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|389849104|ref|YP_006351340.1| - 8e-05 22.9 0.0 0.00074 19.7 0.0 2.2 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389849104|ref|YP_006351340.1| - 0.0008 19.4 0.0 0.002 18.1 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849104|ref|YP_006351340.1| - 0.0031 17.4 0.2 0.0058 16.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389849104|ref|YP_006351340.1| - 0.053 13.8 4.4 0.1 12.8 0.0 3.4 4 0 0 4 4 4 0 TrkA-N domain Epimerase_2 PF02350.19 gi|389849105|ref|YP_006351341.1| - 4.5e-104 348.0 0.0 5.2e-104 347.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 gi|389849105|ref|YP_006351341.1| - 0.00045 20.7 0.2 0.0011 19.5 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Metallophos_3 PF14582.6 gi|389849105|ref|YP_006351341.1| - 0.0048 16.3 0.1 0.22 10.8 0.0 2.5 3 0 0 3 3 3 1 Metallophosphoesterase, calcineurin superfamily baeRF_family2 PF18844.1 gi|389849105|ref|YP_006351341.1| - 0.19 11.7 3.1 0.33 11.0 0.4 2.4 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 Prenyltrans PF00432.21 gi|389849108|ref|YP_006351344.1| - 0.0077 16.0 0.5 0.032 14.0 0.0 2.3 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat Glyco_hydro_76 PF03663.14 gi|389849108|ref|YP_006351344.1| - 0.041 13.4 0.2 0.25 10.8 0.0 2.3 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 Acetyltransf_6 PF13480.7 gi|389849109|ref|YP_006351345.1| - 1.3e-20 74.0 0.0 2.3e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389849109|ref|YP_006351345.1| - 4.1e-07 29.2 0.1 0.00065 18.7 0.0 2.7 3 0 0 3 3 3 2 FemAB family Acetyltransf_6 PF13480.7 gi|389849110|ref|YP_006351346.1| - 9.3e-23 81.0 0.0 8.2e-22 77.9 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389849110|ref|YP_006351346.1| - 0.00092 18.2 0.0 0.024 13.5 0.0 2.5 3 0 0 3 3 3 1 FemAB family HTH_20 PF12840.7 gi|389849111|ref|YP_006351347.1| - 0.00041 20.4 0.1 0.00051 20.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849111|ref|YP_006351347.1| - 0.0018 18.2 0.4 0.0036 17.2 0.3 1.6 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|389849111|ref|YP_006351347.1| - 0.0026 17.6 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389849111|ref|YP_006351347.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849111|ref|YP_006351347.1| - 0.029 14.3 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|389849111|ref|YP_006351347.1| - 0.039 13.9 0.0 0.045 13.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|389849111|ref|YP_006351347.1| - 0.045 13.8 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|389849111|ref|YP_006351347.1| - 0.072 13.0 0.4 0.1 12.5 0.4 1.2 1 0 0 1 1 1 0 MarR family SurE PF01975.17 gi|389849112|ref|YP_006351348.1| - 4.4e-46 157.1 0.0 5.6e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE CBS PF00571.28 gi|389849113|ref|YP_006351349.1| - 1.3e-28 99.2 3.0 3.1e-14 53.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain Orthopox_F6 PF06601.12 gi|389849113|ref|YP_006351349.1| - 0.039 14.1 0.4 0.089 13.0 0.1 1.7 2 0 0 2 2 2 0 Orthopoxvirus F6 protein PMSR PF01625.21 gi|389849115|ref|YP_006351351.1| - 1.3e-65 220.3 1.9 1.5e-65 220.1 1.9 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|389849115|ref|YP_006351351.1| - 0.067 13.2 1.3 0.12 12.4 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) AAA_31 PF13614.6 gi|389849117|ref|YP_006351353.1| - 1.9e-34 119.1 0.0 2.6e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849117|ref|YP_006351353.1| - 2e-16 60.2 0.0 2.8e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389849117|ref|YP_006351353.1| - 3.5e-09 36.5 1.9 7.3e-07 28.9 0.2 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|389849117|ref|YP_006351353.1| - 6e-05 22.5 0.6 0.0016 17.8 0.2 2.3 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|389849117|ref|YP_006351353.1| - 6.3e-05 22.3 0.5 0.0013 18.0 0.1 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|389849117|ref|YP_006351353.1| - 0.00017 21.1 0.0 0.0006 19.4 0.1 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|389849117|ref|YP_006351353.1| - 0.0048 16.4 0.0 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|389849117|ref|YP_006351353.1| - 0.16 11.3 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|389849117|ref|YP_006351353.1| - 0.23 11.2 0.0 0.37 10.6 0.0 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop LAP1C PF05609.12 gi|389849119|ref|YP_006351355.1| - 0.69 8.9 13.1 0.87 8.6 13.1 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) Raftlin PF15250.6 gi|389849119|ref|YP_006351355.1| - 0.8 8.4 10.0 0.98 8.1 10.0 1.0 1 0 0 1 1 1 0 Raftlin DUF4662 PF15578.6 gi|389849119|ref|YP_006351355.1| - 5.4 6.7 6.5 7.6 6.2 6.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4662) OrfB_Zn_ribbon PF07282.11 gi|389849120|ref|YP_006351356.1| - 1.7e-23 82.3 1.4 2.1e-23 82.0 1.4 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|389849120|ref|YP_006351356.1| - 0.00028 21.1 1.0 0.00044 20.5 1.0 1.2 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|389849120|ref|YP_006351356.1| - 0.0017 18.4 0.8 0.0023 18.0 0.8 1.3 1 0 0 1 1 1 1 Ribosomal L37ae protein family A2L_zn_ribbon PF08792.10 gi|389849120|ref|YP_006351356.1| - 0.018 14.7 2.5 0.033 13.9 2.5 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|389849120|ref|YP_006351356.1| - 0.02 14.9 4.3 0.031 14.3 4.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389849120|ref|YP_006351356.1| - 0.027 14.0 5.4 0.036 13.6 4.3 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_IS605 PF01385.19 gi|389849121|ref|YP_006351357.1| - 3.2e-08 33.8 0.0 3.5e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Flagellin_D3 PF08884.11 gi|389849121|ref|YP_006351357.1| - 0.037 14.4 0.3 0.042 14.3 0.3 1.2 1 0 0 1 1 1 0 Flagellin D3 domain Cdc6_C PF09079.11 gi|389849123|ref|YP_006351359.1| - 1e-18 67.1 0.1 2.5e-18 65.8 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389849123|ref|YP_006351359.1| - 1.3e-12 48.1 0.0 5.4e-12 46.2 0.0 2.0 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|389849123|ref|YP_006351359.1| - 1.3e-11 45.2 0.4 1.7e-10 41.5 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389849123|ref|YP_006351359.1| - 4.2e-05 24.0 0.0 0.00015 22.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|389849123|ref|YP_006351359.1| - 0.00035 19.8 0.0 0.00084 18.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|389849123|ref|YP_006351359.1| - 0.00079 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|389849123|ref|YP_006351359.1| - 0.002 17.4 0.0 0.003 16.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain TniB PF05621.11 gi|389849123|ref|YP_006351359.1| - 0.0037 16.7 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|389849123|ref|YP_006351359.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|389849123|ref|YP_006351359.1| - 0.023 14.7 0.6 0.41 10.6 0.2 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|389849123|ref|YP_006351359.1| - 0.03 14.9 0.0 0.23 12.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|389849123|ref|YP_006351359.1| - 0.045 13.5 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|389849123|ref|YP_006351359.1| - 0.069 11.9 0.0 1.1 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|389849123|ref|YP_006351359.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|389849123|ref|YP_006351359.1| - 0.13 12.7 0.1 0.3 11.5 0.1 1.8 1 1 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|389849123|ref|YP_006351359.1| - 0.14 11.4 0.0 0.32 10.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|389849123|ref|YP_006351359.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|389849123|ref|YP_006351359.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Na_K-ATPase PF00287.18 gi|389849125|ref|YP_006351361.1| - 0.074 12.2 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain ADH_zinc_N PF00107.26 gi|389849127|ref|YP_006351363.1| - 1.1e-22 80.4 0.1 1.6e-22 79.8 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389849127|ref|YP_006351363.1| - 1.5e-21 76.3 0.3 2.5e-21 75.6 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|389849127|ref|YP_006351363.1| - 2.6e-15 57.7 0.2 5.3e-15 56.6 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|389849127|ref|YP_006351363.1| - 0.11 12.6 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region eIF-1a PF01176.19 gi|389849128|ref|YP_006351364.1| - 1.2e-20 73.1 0.3 1.4e-20 72.9 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ADH_N PF08240.12 gi|389849129|ref|YP_006351365.1| - 5.5e-31 106.7 0.1 1e-30 105.8 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389849129|ref|YP_006351365.1| - 1.8e-26 92.7 0.7 2.9e-26 92.0 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|389849129|ref|YP_006351365.1| - 2.9e-10 40.0 1.3 4.8e-10 39.3 1.3 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|389849129|ref|YP_006351365.1| - 1.4e-06 29.4 0.2 2.5e-06 28.6 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.16 gi|389849129|ref|YP_006351365.1| - 0.004 17.8 1.7 0.0069 17.0 1.7 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|389849129|ref|YP_006351365.1| - 0.042 14.5 0.4 0.097 13.4 0.4 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|389849129|ref|YP_006351365.1| - 0.05 13.9 0.9 0.082 13.2 0.9 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|389849129|ref|YP_006351365.1| - 0.055 12.8 0.1 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_24 PF13578.6 gi|389849129|ref|YP_006351365.1| - 0.083 13.9 0.3 0.17 13.0 0.3 1.5 1 0 0 1 1 1 0 Methyltransferase domain ADH_N_2 PF16884.5 gi|389849129|ref|YP_006351365.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase tRNA_edit PF04073.15 gi|389849130|ref|YP_006351366.1| - 1.4e-28 99.5 0.1 1.6e-28 99.2 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Pilin_N PF07790.11 gi|389849131|ref|YP_006351367.1| - 7.4e-25 87.7 2.5 7.4e-25 87.7 2.5 1.6 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Abhydrolase_8 PF06259.12 gi|389849131|ref|YP_006351367.1| - 0.0025 17.5 0.6 0.0034 17.0 0.6 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Cadherin-like PF12733.7 gi|389849131|ref|YP_006351367.1| - 0.43 11.1 4.7 1.1 9.8 4.3 1.7 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain T2SSF PF00482.23 gi|389849138|ref|YP_006351374.1| - 2.2e-26 92.3 7.5 4.7e-14 52.4 2.4 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF5344 PF17279.2 gi|389849138|ref|YP_006351374.1| - 0.12 13.0 0.1 0.75 10.4 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Ribosomal_60s PF00428.19 gi|389849139|ref|YP_006351375.1| - 1.2e-08 35.5 11.0 2.1e-08 34.6 11.0 1.4 1 0 0 1 1 1 1 60s Acidic ribosomal protein T2SSE PF00437.20 gi|389849140|ref|YP_006351376.1| - 2.6e-45 154.6 0.0 4.6e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|389849140|ref|YP_006351376.1| - 0.0023 17.6 0.1 0.0048 16.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase PF06745.13 gi|389849141|ref|YP_006351377.1| - 1.1e-07 31.4 0.0 0.0044 16.4 0.0 2.2 1 1 1 2 2 2 2 KaiC Rad51 PF08423.11 gi|389849141|ref|YP_006351377.1| - 0.12 11.7 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad51 Pilin_N PF07790.11 gi|389849142|ref|YP_006351378.1| - 2.6e-18 66.7 1.6 4.9e-18 65.8 1.6 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Bactofilin PF04519.13 gi|389849143|ref|YP_006351379.1| - 0.026 14.8 4.7 0.027 14.8 0.3 2.9 3 0 0 3 3 3 0 Polymer-forming cytoskeletal Glyoxalase PF00903.25 gi|389849145|ref|YP_006351381.1| - 1.5e-15 57.6 0.1 2.2e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849145|ref|YP_006351381.1| - 5.1e-14 52.5 0.0 8e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|389849145|ref|YP_006351381.1| - 1.5e-08 34.6 0.0 2.4e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|389849145|ref|YP_006351381.1| - 1.9e-05 25.4 0.2 6.7e-05 23.6 0.2 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|389849145|ref|YP_006351381.1| - 0.00058 20.0 0.0 0.0011 19.1 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain DUF3890 PF13029.6 gi|389849145|ref|YP_006351381.1| - 0.11 12.9 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3890) Chalcone PF02431.15 gi|389849145|ref|YP_006351381.1| - 0.16 11.3 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Chalcone-flavanone isomerase PAS PF00989.25 gi|389849146|ref|YP_006351382.1| - 1.8e-34 118.1 0.0 3.6e-18 65.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|389849146|ref|YP_006351382.1| - 1.8e-32 111.7 0.0 1.1e-15 57.7 0.0 2.7 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|389849146|ref|YP_006351382.1| - 1.8e-27 95.7 0.1 4.9e-16 58.9 0.3 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|389849146|ref|YP_006351382.1| - 1.6e-19 70.0 0.0 2.6e-08 34.0 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|389849146|ref|YP_006351382.1| - 6.2e-17 61.2 0.0 7e-09 35.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|389849146|ref|YP_006351382.1| - 2.1e-12 47.6 0.0 4.4e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389849146|ref|YP_006351382.1| - 2.8e-09 37.0 0.1 6.3e-09 35.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|389849146|ref|YP_006351382.1| - 2.6e-05 24.7 0.0 0.0076 16.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain HisKA_4TM PF16926.5 gi|389849146|ref|YP_006351382.1| - 0.00011 21.9 0.1 0.00024 20.7 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|389849146|ref|YP_006351382.1| - 0.0043 16.9 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|389849146|ref|YP_006351382.1| - 0.014 15.1 0.1 0.042 13.6 0.1 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain SpoVT_C PF15714.5 gi|389849146|ref|YP_006351382.1| - 0.056 13.5 0.3 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor PAS_12 PF18095.1 gi|389849146|ref|YP_006351382.1| - 0.095 12.3 0.0 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HisKA PF00512.25 gi|389849146|ref|YP_006351382.1| - 0.14 12.2 2.5 0.23 11.5 0.8 2.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Iron_transport PF10634.9 gi|389849147|ref|YP_006351383.1| - 0.00017 21.8 0.0 0.0081 16.3 0.0 2.5 2 0 0 2 2 2 2 Fe2+ transport protein zf-C2H2 PF00096.26 gi|389849148|ref|YP_006351384.1| - 0.04 14.4 0.1 0.062 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_12 PF18658.1 gi|389849148|ref|YP_006351384.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger C2H2-type PTR2 PF00854.21 gi|389849149|ref|YP_006351385.1| - 0.0022 16.9 0.5 1.4 7.7 0.2 2.2 2 0 0 2 2 2 2 POT family E1-E2_ATPase PF00122.20 gi|389849150|ref|YP_006351386.1| - 2.6e-54 183.5 0.7 2.6e-54 183.5 0.7 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|389849150|ref|YP_006351386.1| - 1e-41 143.6 1.3 1e-41 143.6 1.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|389849150|ref|YP_006351386.1| - 5.2e-29 100.5 1.5 3e-13 50.0 0.0 3.7 4 0 0 4 4 4 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|389849150|ref|YP_006351386.1| - 0.0012 18.7 0.5 0.018 14.8 0.7 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389849150|ref|YP_006351386.1| - 0.0012 19.3 0.1 0.0037 17.7 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Anti-TRAP PF15777.5 gi|389849150|ref|YP_006351386.1| - 0.14 12.1 0.6 24 5.0 0.0 2.6 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-LITAF-like PF10601.9 gi|389849150|ref|YP_006351386.1| - 0.29 11.4 2.8 29 5.0 0.0 3.3 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain HIPIP PF01355.17 gi|389849151|ref|YP_006351387.1| - 7.4e-09 35.8 0.1 1.1e-08 35.2 0.1 1.3 1 0 0 1 1 1 1 High potential iron-sulfur protein HPIP_like PF18524.1 gi|389849151|ref|YP_006351387.1| - 0.13 12.0 1.1 0.23 11.3 1.1 1.4 1 0 0 1 1 1 0 High potential iron-sulfur protein like eIF-1a PF01176.19 gi|389849152|ref|YP_006351388.1| - 0.21 11.4 1.1 2.1 8.2 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor 1A / IF-1 Pyr_redox_2 PF07992.14 gi|389849154|ref|YP_006351390.1| - 2e-49 168.4 0.2 2e-49 168.4 0.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389849154|ref|YP_006351390.1| - 2.9e-24 85.4 1.1 3.3e-18 66.0 0.1 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849154|ref|YP_006351390.1| - 7.5e-12 45.5 0.0 5.2e-11 42.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|389849154|ref|YP_006351390.1| - 1e-07 31.6 0.0 0.0061 15.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389849154|ref|YP_006351390.1| - 1.6e-07 31.5 0.9 0.014 15.6 0.2 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389849154|ref|YP_006351390.1| - 8.2e-05 22.3 2.6 1.2 8.6 0.0 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389849154|ref|YP_006351390.1| - 0.00031 19.6 0.1 0.75 8.4 0.0 3.4 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.18 gi|389849154|ref|YP_006351390.1| - 0.0028 17.6 0.1 0.0049 16.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389849154|ref|YP_006351390.1| - 0.0091 16.4 0.4 1.1 9.7 0.1 2.8 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|389849154|ref|YP_006351390.1| - 0.021 13.9 0.5 3.3 6.7 0.1 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|389849154|ref|YP_006351390.1| - 0.029 14.3 0.2 0.42 10.6 0.1 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|389849154|ref|YP_006351390.1| - 0.038 13.2 0.1 1.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|389849154|ref|YP_006351390.1| - 0.11 11.8 0.7 0.58 9.4 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|389849154|ref|YP_006351390.1| - 0.21 10.8 4.4 5 6.3 0.1 2.9 2 1 1 3 3 3 0 FAD binding domain EamA PF00892.20 gi|389849155|ref|YP_006351391.1| - 5.1e-39 133.6 33.1 6.8e-20 71.6 10.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family ZnuA PF01297.17 gi|389849157|ref|YP_006351393.1| - 3.8e-54 183.8 1.6 5.6e-54 183.2 1.6 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Macoilin PF09726.9 gi|389849157|ref|YP_006351393.1| - 0.62 8.5 5.6 0.76 8.3 5.6 1.1 1 0 0 1 1 1 0 Macoilin family SpoIIIAH PF12685.7 gi|389849157|ref|YP_006351393.1| - 1.1 9.1 6.6 1.9 8.2 6.6 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein Presenilin PF01080.17 gi|389849157|ref|YP_006351393.1| - 1.2 7.8 6.8 1.5 7.5 6.8 1.1 1 0 0 1 1 1 0 Presenilin Mpp10 PF04006.12 gi|389849157|ref|YP_006351393.1| - 1.3 7.4 17.6 1.7 7.0 17.6 1.1 1 0 0 1 1 1 0 Mpp10 protein CDC45 PF02724.14 gi|389849157|ref|YP_006351393.1| - 1.3 7.2 11.8 1.7 6.9 11.8 1.1 1 0 0 1 1 1 0 CDC45-like protein LAP1C PF05609.12 gi|389849157|ref|YP_006351393.1| - 2.3 7.2 13.8 3.2 6.7 13.8 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) SAPS PF04499.15 gi|389849157|ref|YP_006351393.1| - 3 6.5 10.0 3.9 6.2 10.0 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein SLC12 PF03522.15 gi|389849157|ref|YP_006351393.1| - 3 6.8 4.2 4 6.4 4.2 1.1 1 0 0 1 1 1 0 Solute carrier family 12 ABC_tran PF00005.27 gi|389849158|ref|YP_006351394.1| - 8.6e-31 107.3 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849158|ref|YP_006351394.1| - 4.2e-10 39.9 0.0 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849158|ref|YP_006351394.1| - 4.4e-06 26.3 0.3 7.1e-05 22.3 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389849158|ref|YP_006351394.1| - 0.00064 19.4 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849158|ref|YP_006351394.1| - 0.0021 18.5 0.8 0.0069 16.8 0.8 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|389849158|ref|YP_006351394.1| - 0.0025 17.6 0.0 0.047 13.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|389849158|ref|YP_006351394.1| - 0.0054 16.9 1.3 0.22 11.8 1.0 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|389849158|ref|YP_006351394.1| - 0.016 15.7 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|389849158|ref|YP_006351394.1| - 0.023 14.9 0.1 0.32 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|389849158|ref|YP_006351394.1| - 0.046 13.6 0.0 0.092 12.7 0.0 1.5 1 1 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|389849158|ref|YP_006351394.1| - 0.058 13.6 0.1 0.36 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|389849158|ref|YP_006351394.1| - 0.058 13.1 0.4 0.27 10.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|389849158|ref|YP_006351394.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|389849158|ref|YP_006351394.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Methyltransf_21 PF05050.12 gi|389849158|ref|YP_006351394.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain IstB_IS21 PF01695.17 gi|389849158|ref|YP_006351394.1| - 0.15 11.8 0.1 17 5.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein CLP1_P PF16575.5 gi|389849158|ref|YP_006351394.1| - 0.21 11.3 0.0 7 6.4 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC-3 PF00950.17 gi|389849160|ref|YP_006351396.1| - 2.5e-56 191.0 35.1 3.3e-56 190.7 35.1 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|389849160|ref|YP_006351396.1| - 0.0016 17.5 36.2 0.0016 17.5 36.2 1.6 1 1 0 1 1 1 1 FecCD transport family DUF1180 PF06679.12 gi|389849160|ref|YP_006351396.1| - 2.6 8.4 4.7 0.91 9.9 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) MCPsignal PF00015.21 gi|389849162|ref|YP_006351398.1| - 4e-45 153.7 49.5 1.2e-43 148.9 28.0 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|389849162|ref|YP_006351398.1| - 4e-06 27.0 31.7 0.01 16.1 2.6 5.0 2 2 1 4 4 4 4 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.6 gi|389849162|ref|YP_006351398.1| - 0.00025 21.4 7.7 0.73 10.2 0.7 4.4 2 1 2 4 4 3 2 Syntaxin-like protein Fib_alpha PF08702.10 gi|389849162|ref|YP_006351398.1| - 0.0049 17.0 2.3 0.0049 17.0 2.3 3.4 2 2 1 3 3 3 1 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|389849162|ref|YP_006351398.1| - 0.011 15.7 27.5 1 9.4 2.5 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|389849162|ref|YP_006351398.1| - 0.014 15.4 36.0 0.085 12.9 4.1 4.4 2 2 2 4 4 4 0 Laminin Domain II Sec5 PF15469.6 gi|389849162|ref|YP_006351398.1| - 0.019 14.8 7.8 0.08 12.7 5.7 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 Fzo_mitofusin PF04799.13 gi|389849162|ref|YP_006351398.1| - 0.055 13.0 12.4 0.87 9.1 0.2 3.8 3 2 1 4 4 4 0 fzo-like conserved region Mod_r PF07200.13 gi|389849162|ref|YP_006351398.1| - 0.2 11.8 12.1 2.3 8.3 2.9 2.8 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein CENP-S PF15630.6 gi|389849162|ref|YP_006351398.1| - 0.23 11.9 0.3 0.23 11.9 0.3 2.9 3 0 0 3 3 3 0 CENP-S protein BLOC1_2 PF10046.9 gi|389849162|ref|YP_006351398.1| - 0.32 11.3 20.4 1.4 9.3 1.0 4.8 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ApoLp-III PF07464.11 gi|389849162|ref|YP_006351398.1| - 0.38 10.8 28.3 0.038 14.1 12.3 3.2 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) COG2 PF06148.11 gi|389849162|ref|YP_006351398.1| - 0.55 10.3 22.9 1.5 8.9 1.2 4.2 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DegS PF05384.11 gi|389849162|ref|YP_006351398.1| - 0.75 9.3 17.9 0.69 9.4 0.4 3.9 4 0 0 4 4 4 0 Sensor protein DegS TMPIT PF07851.13 gi|389849162|ref|YP_006351398.1| - 1.3 8.2 10.2 3.2 6.9 1.2 3.0 2 1 1 3 3 3 0 TMPIT-like protein Spc7 PF08317.11 gi|389849162|ref|YP_006351398.1| - 1.7 7.5 23.2 2.5 6.9 8.7 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein YkyA PF10368.9 gi|389849162|ref|YP_006351398.1| - 2.2 7.9 27.7 0.1 12.2 7.2 3.3 2 1 0 3 3 3 0 Putative cell-wall binding lipoprotein Syntaxin-6_N PF09177.11 gi|389849162|ref|YP_006351398.1| - 2.3 8.8 20.8 5.5 7.6 1.4 4.0 2 2 1 3 3 3 0 Syntaxin 6, N-terminal DUF4618 PF15397.6 gi|389849162|ref|YP_006351398.1| - 2.4 7.5 10.4 1.7 8.0 0.2 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4618) Prominin PF05478.11 gi|389849162|ref|YP_006351398.1| - 2.8 5.8 11.7 2.6 5.9 3.2 2.1 1 1 1 2 2 2 0 Prominin FH2 PF02181.23 gi|389849162|ref|YP_006351398.1| - 3.2 6.8 11.7 0.75 8.8 1.2 2.9 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF2203 PF09969.9 gi|389849162|ref|YP_006351398.1| - 3.4 8.4 20.2 4.1 8.2 2.5 3.6 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF2730 PF10805.8 gi|389849162|ref|YP_006351398.1| - 3.8 7.7 8.0 5.4 7.2 0.1 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2730) Dor1 PF04124.12 gi|389849162|ref|YP_006351398.1| - 3.9 6.1 10.6 1.7 7.3 6.7 2.1 1 1 1 2 2 2 0 Dor1-like family HMMR_N PF15905.5 gi|389849162|ref|YP_006351398.1| - 3.9 6.9 13.6 1.6 8.1 3.0 2.4 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CorA PF01544.18 gi|389849162|ref|YP_006351398.1| - 5.7 6.2 12.5 1.2 8.4 3.9 2.4 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Adaptin_binding PF10199.9 gi|389849162|ref|YP_006351398.1| - 8.7 7.0 11.3 3.2 8.4 2.6 2.4 2 1 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 LOH1CR12 PF10158.9 gi|389849162|ref|YP_006351398.1| - 9.9 6.2 12.0 2 8.5 1.6 3.3 2 2 0 3 3 3 0 Tumour suppressor protein CheW PF01584.19 gi|389849163|ref|YP_006351399.1| - 4.7e-23 81.4 0.1 5.6e-23 81.1 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MFS_1 PF07690.16 gi|389849166|ref|YP_006351402.1| - 1.6e-19 70.1 47.7 1.6e-11 43.8 27.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389849166|ref|YP_006351402.1| - 4.5e-05 22.5 9.2 7.1e-05 21.8 9.2 1.3 1 0 0 1 1 1 1 MFS_1 like family DUF3149 PF11346.8 gi|389849166|ref|YP_006351402.1| - 0.12 12.0 1.5 2.9 7.6 0.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) F420_oxidored PF03807.17 gi|389849168|ref|YP_006351404.1| - 1.8e-17 63.7 0.0 3.4e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.9 gi|389849168|ref|YP_006351404.1| - 1.6e-05 24.8 0.2 0.00016 21.6 0.0 2.1 1 1 0 2 2 2 1 Rossmann-like domain NAD_binding_2 PF03446.15 gi|389849168|ref|YP_006351404.1| - 0.0028 17.8 0.1 0.012 15.7 0.0 1.9 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|389849168|ref|YP_006351404.1| - 0.0029 17.5 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|389849168|ref|YP_006351404.1| - 0.038 13.3 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|389849168|ref|YP_006351404.1| - 0.092 12.3 0.0 0.61 9.6 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|389849168|ref|YP_006351404.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|389849168|ref|YP_006351404.1| - 0.19 11.7 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HalOD1 PF18545.1 gi|389849169|ref|YP_006351405.1| - 5e-21 74.8 0.0 6.3e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PGM_PMM_I PF02878.16 gi|389849171|ref|YP_006351407.1| - 1.9e-29 102.1 0.0 3.4e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|389849171|ref|YP_006351407.1| - 8.5e-19 67.8 0.0 1.6e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|389849171|ref|YP_006351407.1| - 6.1e-17 62.1 0.4 1.3e-16 61.1 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|389849171|ref|YP_006351407.1| - 1.7e-14 53.8 0.2 4.1e-14 52.5 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NosL PF05573.12 gi|389849172|ref|YP_006351408.1| - 1.6e-41 141.7 0.1 2e-41 141.4 0.1 1.1 1 0 0 1 1 1 1 NosL PadR PF03551.14 gi|389849174|ref|YP_006351410.1| - 1.6e-10 40.8 0.1 1.9e-10 40.6 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389849174|ref|YP_006351410.1| - 0.0057 17.1 0.0 0.0082 16.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389849174|ref|YP_006351410.1| - 0.0068 16.2 0.0 0.0086 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|389849174|ref|YP_006351410.1| - 0.016 15.3 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|389849174|ref|YP_006351410.1| - 0.036 13.8 0.0 0.043 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.19 gi|389849174|ref|YP_006351410.1| - 0.04 14.1 0.0 0.044 13.9 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_20 PF12840.7 gi|389849175|ref|YP_006351411.1| - 0.0013 18.7 1.2 0.031 14.4 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain GST_N_5 PF18485.1 gi|389849175|ref|YP_006351411.1| - 0.026 14.9 0.0 0.06 13.7 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain HTH_5 PF01022.20 gi|389849175|ref|YP_006351411.1| - 0.032 14.1 0.0 0.65 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FA_desaturase PF00487.24 gi|389849175|ref|YP_006351411.1| - 0.044 13.6 6.4 0.062 13.1 6.4 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.9 gi|389849175|ref|YP_006351411.1| - 0.057 12.2 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF58 PF01882.18 gi|389849175|ref|YP_006351411.1| - 0.075 13.3 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF58 HTH_11 PF08279.12 gi|389849175|ref|YP_006351411.1| - 0.081 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain MMR_HSR1_C PF08438.10 gi|389849176|ref|YP_006351412.1| - 0.22 12.1 1.1 1.2 9.8 0.1 2.1 2 0 0 2 2 2 0 GTPase of unknown function C-terminal NTP_transferase PF00483.23 gi|389849177|ref|YP_006351413.1| - 6.5e-28 98.0 0.0 8.3e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849177|ref|YP_006351413.1| - 2.3e-17 63.8 0.1 3.9e-17 63.1 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849177|ref|YP_006351413.1| - 3.2e-17 61.5 19.3 2.3e-05 23.9 0.4 4.9 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849177|ref|YP_006351413.1| - 3.1e-07 30.0 19.0 0.00016 21.3 5.2 6.3 4 2 2 6 6 6 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|389849177|ref|YP_006351413.1| - 0.00012 21.9 0.1 0.00019 21.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|389849177|ref|YP_006351413.1| - 0.0053 15.7 0.1 0.038 12.9 0.1 2.2 2 0 0 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|389849177|ref|YP_006351413.1| - 0.026 12.7 0.3 0.039 12.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) SIS PF01380.22 gi|389849178|ref|YP_006351414.1| - 2.6e-50 169.6 0.6 3.9e-24 85.0 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|389849178|ref|YP_006351414.1| - 8.7e-22 77.8 0.1 2.4e-21 76.3 0.1 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|389849178|ref|YP_006351414.1| - 4.1e-19 68.7 0.0 9.3e-19 67.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389849178|ref|YP_006351414.1| - 5.7e-05 22.1 0.0 9.1e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|389849178|ref|YP_006351414.1| - 0.00018 21.6 0.2 0.032 14.3 0.1 2.6 2 0 0 2 2 2 2 SIS domain Hydrolase PF00702.26 gi|389849178|ref|YP_006351414.1| - 0.028 14.7 0.3 0.26 11.6 0.0 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|389849179|ref|YP_006351415.1| - 4.9e-10 39.3 0.3 1.1e-09 38.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389849179|ref|YP_006351415.1| - 4.5e-09 36.1 0.0 7.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389849179|ref|YP_006351415.1| - 6.3e-07 29.2 0.0 1.7e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849179|ref|YP_006351415.1| - 6.9e-07 29.1 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|389849179|ref|YP_006351415.1| - 1.2e-06 28.2 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|389849179|ref|YP_006351415.1| - 5.6e-05 22.8 0.0 5.6e-05 22.8 0.0 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849179|ref|YP_006351415.1| - 9.2e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389849179|ref|YP_006351415.1| - 0.00024 21.0 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|389849179|ref|YP_006351415.1| - 0.00029 20.3 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389849179|ref|YP_006351415.1| - 0.00034 20.4 0.1 0.00072 19.3 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|389849179|ref|YP_006351415.1| - 0.00089 19.2 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|389849179|ref|YP_006351415.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family FUR PF01475.19 gi|389849179|ref|YP_006351415.1| - 0.0017 18.5 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family Sigma70_r4 PF04545.16 gi|389849179|ref|YP_006351415.1| - 0.0041 16.6 0.0 0.052 13.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|389849179|ref|YP_006351415.1| - 0.0071 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|389849179|ref|YP_006351415.1| - 0.0088 16.4 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|389849179|ref|YP_006351415.1| - 0.0092 15.6 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|389849179|ref|YP_006351415.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|389849179|ref|YP_006351415.1| - 0.013 16.0 0.1 0.031 14.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|389849179|ref|YP_006351415.1| - 0.017 15.1 0.3 0.05 13.6 0.0 1.8 2 1 0 2 2 2 0 Dimerisation domain HTH_29 PF13551.6 gi|389849179|ref|YP_006351415.1| - 0.027 14.5 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix B-block_TFIIIC PF04182.12 gi|389849179|ref|YP_006351415.1| - 0.034 14.3 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.6 gi|389849179|ref|YP_006351415.1| - 0.039 13.8 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Sulfolobus_pRN PF05584.11 gi|389849179|ref|YP_006351415.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein ArsR PF09824.9 gi|389849179|ref|YP_006351415.1| - 0.071 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator TetR_N PF00440.23 gi|389849179|ref|YP_006351415.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 gi|389849179|ref|YP_006351415.1| - 0.083 13.2 0.5 0.28 11.6 0.0 2.2 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|389849179|ref|YP_006351415.1| - 0.091 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF4423 PF14394.6 gi|389849179|ref|YP_006351415.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Replic_Relax PF13814.6 gi|389849179|ref|YP_006351415.1| - 0.16 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_Tnp_ISL3 PF13542.6 gi|389849179|ref|YP_006351415.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|389849179|ref|YP_006351415.1| - 0.18 11.6 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HxlR PF01638.17 gi|389849183|ref|YP_006351419.1| - 7e-22 77.1 0.0 8.4e-22 76.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|389849183|ref|YP_006351419.1| - 1.3e-05 25.3 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|389849183|ref|YP_006351419.1| - 8.8e-05 22.9 0.1 0.00016 22.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|389849183|ref|YP_006351419.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389849183|ref|YP_006351419.1| - 0.0017 18.2 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849183|ref|YP_006351419.1| - 0.0027 17.6 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|389849183|ref|YP_006351419.1| - 0.0042 17.0 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849183|ref|YP_006351419.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|389849183|ref|YP_006351419.1| - 0.039 14.0 0.0 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|389849183|ref|YP_006351419.1| - 0.073 13.1 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Connexin50 PF03509.14 gi|389849183|ref|YP_006351419.1| - 0.087 13.6 0.0 0.17 12.7 0.0 1.5 1 0 0 1 1 1 0 Gap junction alpha-8 protein (Cx50) DUF4364 PF14277.6 gi|389849183|ref|YP_006351419.1| - 0.093 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TnsD PF15978.5 gi|389849183|ref|YP_006351419.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D Rrf2 PF02082.20 gi|389849183|ref|YP_006351419.1| - 0.16 12.4 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Rrf2 PF02082.20 gi|389849184|ref|YP_006351420.1| - 4.7e-25 87.8 0.0 1.8e-24 85.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|389849184|ref|YP_006351420.1| - 4.7e-07 29.4 0.0 7.1e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.17 gi|389849184|ref|YP_006351420.1| - 0.02 14.8 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Put_DNA-bind_N PF06971.13 gi|389849184|ref|YP_006351420.1| - 0.026 14.5 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus NTP_transferase PF00483.23 gi|389849185|ref|YP_006351421.1| - 5.3e-42 144.1 0.0 8e-42 143.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849185|ref|YP_006351421.1| - 3.1e-16 60.1 0.2 5.4e-16 59.4 0.2 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849185|ref|YP_006351421.1| - 1.9e-10 40.1 11.4 0.00033 20.3 1.8 4.6 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|389849185|ref|YP_006351421.1| - 0.00025 20.9 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|389849185|ref|YP_006351421.1| - 0.06 13.1 7.9 5 7.0 0.0 4.1 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|389849185|ref|YP_006351421.1| - 0.11 12.8 5.1 0.2 12.0 4.0 2.0 1 1 1 2 2 2 0 Polymer-forming cytoskeletal IMPDH PF00478.25 gi|389849186|ref|YP_006351422.1| - 7.8e-115 383.6 3.5 9.6e-115 383.3 3.5 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|389849186|ref|YP_006351422.1| - 6.5e-11 42.2 7.4 8.1e-06 25.5 3.4 2.5 1 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|389849186|ref|YP_006351422.1| - 6.3e-09 35.3 4.8 1.1e-08 34.5 4.8 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|389849186|ref|YP_006351422.1| - 2.4e-07 30.5 0.5 0.00031 20.3 0.0 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|389849186|ref|YP_006351422.1| - 0.00013 21.2 0.6 0.00032 19.9 0.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|389849186|ref|YP_006351422.1| - 0.0053 16.0 0.2 0.012 14.8 0.2 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase QRPTase_C PF01729.19 gi|389849186|ref|YP_006351422.1| - 0.011 15.5 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|389849186|ref|YP_006351422.1| - 0.015 14.5 3.8 0.26 10.5 2.4 3.1 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|389849186|ref|YP_006351422.1| - 0.021 14.2 0.8 0.13 11.6 0.5 2.0 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family ChaC PF04752.12 gi|389849186|ref|YP_006351422.1| - 0.031 14.4 0.2 11 6.0 0.0 2.3 2 0 0 2 2 2 0 ChaC-like protein DUF1381 PF07129.11 gi|389849186|ref|YP_006351422.1| - 0.036 13.9 0.1 0.098 12.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) ThiG PF05690.14 gi|389849186|ref|YP_006351422.1| - 0.037 13.3 0.6 0.072 12.4 0.2 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG EAL PF00563.20 gi|389849186|ref|YP_006351422.1| - 0.065 12.7 0.1 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 EAL domain PcrB PF01884.17 gi|389849186|ref|YP_006351422.1| - 0.13 11.7 0.8 0.31 10.5 0.1 1.9 2 0 0 2 2 2 0 PcrB family Cas_Cas6 PF01881.16 gi|389849187|ref|YP_006351423.1| - 1.7e-15 57.8 0.0 2.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.10 gi|389849188|ref|YP_006351424.1| - 2.9e-18 66.0 0.0 1.5e-09 37.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) AAA_17 PF13207.6 gi|389849188|ref|YP_006351424.1| - 0.19 12.1 0.1 0.59 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cas_Cas7 PF05107.12 gi|389849189|ref|YP_006351425.1| - 1.5e-48 165.5 0.0 1.8e-48 165.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|389849190|ref|YP_006351426.1| - 2.3e-10 40.7 0.0 2.9e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) PAP_PilO PF06864.12 gi|389849190|ref|YP_006351426.1| - 0.2 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Pilin accessory protein (PilO) HD_6 PF18019.1 gi|389849191|ref|YP_006351427.1| - 2.1e-06 28.0 0.1 4.6e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|389849191|ref|YP_006351427.1| - 4.3e-06 26.9 0.0 8.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|389849191|ref|YP_006351427.1| - 0.00011 22.1 0.0 0.00025 20.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389849191|ref|YP_006351427.1| - 0.02 15.3 0.3 0.11 12.9 0.1 2.3 2 1 0 2 2 2 0 Helicase conserved C-terminal domain PhoH PF02562.16 gi|389849191|ref|YP_006351427.1| - 0.03 13.8 0.0 0.084 12.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein HD PF01966.22 gi|389849191|ref|YP_006351427.1| - 0.048 13.9 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 HD domain Cas_Cas4 PF01930.17 gi|389849192|ref|YP_006351428.1| - 6.6e-49 166.1 0.0 7.6e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|389849192|ref|YP_006351428.1| - 1.6e-05 24.9 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|389849193|ref|YP_006351429.1| - 7.5e-88 294.3 0.0 8.7e-88 294.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|389849194|ref|YP_006351430.1| - 4.6e-16 58.8 0.1 5.2e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF2520 PF10728.9 gi|389849194|ref|YP_006351430.1| - 0.025 14.3 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) SHS2_FTSA PF02491.20 gi|389849194|ref|YP_006351430.1| - 0.062 13.7 0.1 0.075 13.4 0.1 1.1 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA DUF4242 PF14026.6 gi|389849195|ref|YP_006351431.1| - 8.6e-23 80.3 0.2 9.4e-23 80.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) Peptidase_S74 PF13884.6 gi|389849195|ref|YP_006351431.1| - 0.042 14.2 0.0 0.064 13.6 0.0 1.4 1 1 0 1 1 1 0 Chaperone of endosialidase AP_endonuc_2 PF01261.24 gi|389849196|ref|YP_006351432.1| - 0.071 12.5 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|389849197|ref|YP_006351433.1| - 2.2e-43 148.5 53.3 5.6e-34 117.6 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|389849197|ref|YP_006351433.1| - 0.036 12.4 0.6 0.18 10.0 0.3 1.9 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DZR PF12773.7 gi|389849198|ref|YP_006351434.1| - 0.021 14.9 0.2 0.027 14.5 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|389849198|ref|YP_006351434.1| - 0.022 14.1 0.5 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|389849198|ref|YP_006351434.1| - 0.027 14.5 1.0 0.03 14.4 0.0 1.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|389849198|ref|YP_006351434.1| - 0.069 12.5 1.0 0.13 11.7 0.1 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|389849198|ref|YP_006351434.1| - 0.13 11.9 1.2 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|389849198|ref|YP_006351434.1| - 0.22 11.5 1.4 0.34 11.0 1.4 1.3 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|389849198|ref|YP_006351434.1| - 0.31 11.0 2.6 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|389849198|ref|YP_006351434.1| - 0.38 10.9 3.1 6.9 6.8 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HMA PF00403.26 gi|389849198|ref|YP_006351434.1| - 0.42 11.1 2.1 12 6.5 0.1 2.4 2 1 0 2 2 2 0 Heavy-metal-associated domain zf-C2H2_3 PF13878.6 gi|389849198|ref|YP_006351434.1| - 2.1 8.3 4.0 3.1 7.7 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.6 gi|389849199|ref|YP_006351435.1| - 0.0024 17.2 1.8 0.42 10.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389849199|ref|YP_006351435.1| - 0.0068 16.1 1.0 2.9 7.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|389849199|ref|YP_006351435.1| - 0.028 14.4 0.2 0.045 13.8 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|389849199|ref|YP_006351435.1| - 0.079 12.9 0.6 6.7 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|389849199|ref|YP_006351435.1| - 0.1 11.1 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.6 gi|389849199|ref|YP_006351435.1| - 0.17 12.3 1.9 5.2 7.5 1.9 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|389849199|ref|YP_006351435.1| - 0.22 11.7 5.0 0.29 11.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|389849199|ref|YP_006351435.1| - 0.36 10.6 2.2 13 5.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|389849199|ref|YP_006351435.1| - 0.41 10.8 2.4 6 7.0 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain GDPD PF03009.17 gi|389849200|ref|YP_006351436.1| - 3.8e-31 108.8 0.1 1.1e-30 107.3 0.1 1.7 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Urocanase_C PF17392.2 gi|389849201|ref|YP_006351437.1| - 2.3e-86 288.3 0.2 3.6e-86 287.6 0.2 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|389849201|ref|YP_006351437.1| - 4.8e-82 274.7 0.0 6.6e-82 274.2 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|389849201|ref|YP_006351437.1| - 7.2e-57 190.6 0.0 1.8e-56 189.3 0.0 1.7 1 0 0 1 1 1 1 Urocanase N-terminal domain GrpE PF01025.19 gi|389849201|ref|YP_006351437.1| - 0.036 13.7 0.4 0.16 11.6 0.1 1.9 1 1 1 2 2 2 0 GrpE BtrH_N PF14399.6 gi|389849201|ref|YP_006351437.1| - 0.042 14.1 0.0 0.097 12.9 0.0 1.5 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal Arginase PF00491.21 gi|389849202|ref|YP_006351438.1| - 1.3e-62 211.9 0.7 1.5e-62 211.7 0.7 1.0 1 0 0 1 1 1 1 Arginase family Amidohydro_1 PF01979.20 gi|389849203|ref|YP_006351439.1| - 1e-19 71.1 0.3 1.1e-18 67.7 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|389849203|ref|YP_006351439.1| - 2.4e-19 70.1 13.8 6e-12 45.8 6.7 2.5 1 1 1 2 2 2 2 Amidohydrolase family Lyase_aromatic PF00221.19 gi|389849204|ref|YP_006351440.1| - 1.8e-192 640.2 4.0 2e-192 640.0 4.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase PQQ_2 PF13360.6 gi|389849205|ref|YP_006351441.1| - 3.1e-24 85.9 8.6 1.1e-16 61.2 1.9 2.5 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|389849205|ref|YP_006351441.1| - 3.7e-11 42.4 2.8 0.06 13.3 0.0 5.8 6 0 0 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389849205|ref|YP_006351441.1| - 6e-09 36.1 19.5 0.0019 18.6 0.1 5.6 8 0 0 8 8 8 3 PQQ-like domain HZS_alpha PF18582.1 gi|389849205|ref|YP_006351441.1| - 0.16 12.5 0.0 4.6 7.8 0.0 2.8 3 0 0 3 3 3 0 Hydrazine synthase alpha subunit middle domain DDE_Tnp_IS240 PF13610.6 gi|389849207|ref|YP_006351443.1| - 3.6e-31 108.3 0.0 5.1e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389849207|ref|YP_006351443.1| - 2e-08 33.9 0.4 4.5e-08 32.8 0.4 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|389849207|ref|YP_006351443.1| - 0.0033 16.9 0.1 0.0065 16.0 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|389849207|ref|YP_006351443.1| - 0.011 15.9 0.3 0.087 13.0 0.1 2.2 1 1 1 2 2 2 0 Integrase core domain rve_2 PF13333.6 gi|389849207|ref|YP_006351443.1| - 0.04 14.1 0.0 0.089 13.0 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_1 PF01609.21 gi|389849207|ref|YP_006351443.1| - 0.092 12.4 2.1 1.6 8.3 0.8 2.1 2 0 0 2 2 2 0 Transposase DDE domain DUF5441 PF17513.2 gi|389849207|ref|YP_006351443.1| - 0.18 11.5 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5441) DDE_Tnp_1 PF01609.21 gi|389849210|ref|YP_006351446.1| - 0.0069 16.1 0.1 0.011 15.4 0.1 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|389849210|ref|YP_006351446.1| - 0.042 14.2 0.0 0.056 13.8 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|389849211|ref|YP_006351447.1| - 4.9e-31 108.0 0.1 6.4e-31 107.7 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|389849211|ref|YP_006351447.1| - 0.054 11.8 0.0 0.17 10.1 0.0 1.7 1 1 1 2 2 2 0 Transposase DDE domain group 1 Peripla_BP_2 PF01497.18 gi|389849212|ref|YP_006351448.1| - 3.1e-16 59.7 0.0 4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849212|ref|YP_006351448.1| - 0.00017 21.3 1.8 0.00017 21.3 1.8 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence MFMR_assoc PF16596.5 gi|389849212|ref|YP_006351448.1| - 0.0093 16.4 1.9 0.015 15.7 1.9 1.3 1 0 0 1 1 1 1 Disordered region downstream of MFMR GATase_3 PF07685.14 gi|389849213|ref|YP_006351449.1| - 2.3e-40 138.3 0.0 3.4e-40 137.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|389849213|ref|YP_006351449.1| - 2e-10 40.9 0.0 3.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849213|ref|YP_006351449.1| - 0.00032 20.7 0.0 0.00052 20.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|389849213|ref|YP_006351449.1| - 0.07 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I SNO PF01174.19 gi|389849213|ref|YP_006351449.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|389849213|ref|YP_006351449.1| - 0.23 11.2 0.8 19 4.9 0.2 2.3 1 1 1 2 2 2 0 Peptidase C26 AMP-binding PF00501.28 gi|389849214|ref|YP_006351450.1| - 1.9e-94 316.7 0.1 2.2e-94 316.5 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389849214|ref|YP_006351450.1| - 8.5e-18 65.1 0.4 1.9e-17 64.0 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DoxX PF07681.12 gi|389849215|ref|YP_006351451.1| - 1.7e-07 31.7 9.1 1.7e-07 31.7 9.1 1.9 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|389849215|ref|YP_006351451.1| - 0.00042 20.3 5.4 0.00074 19.5 5.4 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD Pyr_redox_2 PF07992.14 gi|389849217|ref|YP_006351453.1| - 3.9e-62 210.2 0.9 5e-62 209.8 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389849217|ref|YP_006351453.1| - 2.4e-22 79.3 0.7 1e-17 64.4 0.3 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849217|ref|YP_006351453.1| - 4.5e-13 49.4 0.2 2e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|389849217|ref|YP_006351453.1| - 1.1e-09 37.9 0.0 9.7e-07 28.3 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389849217|ref|YP_006351453.1| - 3.3e-08 32.7 0.0 0.062 12.0 0.0 4.1 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|389849217|ref|YP_006351453.1| - 1e-07 32.1 0.1 0.0087 16.3 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389849217|ref|YP_006351453.1| - 1.8e-07 31.0 0.6 2.3 7.7 0.0 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389849217|ref|YP_006351453.1| - 2e-07 30.4 1.4 0.19 10.8 0.2 3.4 2 1 0 3 3 3 3 FAD binding domain Amino_oxidase PF01593.24 gi|389849217|ref|YP_006351453.1| - 6.4e-05 22.4 0.1 0.18 11.1 0.0 2.9 2 1 0 3 3 3 2 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|389849217|ref|YP_006351453.1| - 0.001 18.5 2.5 0.46 9.8 0.3 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|389849217|ref|YP_006351453.1| - 0.0035 16.5 0.0 0.0074 15.5 0.0 1.5 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|389849217|ref|YP_006351453.1| - 0.0078 15.3 0.3 1.5 7.8 0.0 2.6 2 1 1 3 3 3 1 Lycopene cyclase protein Thi4 PF01946.17 gi|389849217|ref|YP_006351453.1| - 0.0086 15.3 0.0 0.16 11.1 0.0 2.3 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|389849217|ref|YP_006351453.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389849217|ref|YP_006351453.1| - 0.031 14.7 0.1 1.8 9.0 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|389849217|ref|YP_006351453.1| - 0.034 13.0 0.6 0.59 8.9 0.0 2.6 2 1 1 3 3 3 0 Tryptophan halogenase TrkA_N PF02254.18 gi|389849217|ref|YP_006351453.1| - 0.035 14.4 0.1 8.5 6.7 0.0 3.1 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|389849217|ref|YP_006351453.1| - 0.047 13.7 0.3 12 5.8 0.1 3.5 3 1 1 4 4 4 0 FAD-NAD(P)-binding PALP PF00291.25 gi|389849218|ref|YP_006351454.1| - 4.7e-46 157.5 1.3 5.5e-46 157.3 1.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CN_hydrolase PF00795.22 gi|389849219|ref|YP_006351455.1| - 1.9e-60 204.4 0.0 2.1e-60 204.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Cupin_2 PF07883.11 gi|389849221|ref|YP_006351457.1| - 1.7e-08 34.1 0.1 2.7e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|389849221|ref|YP_006351457.1| - 0.00011 21.8 0.1 0.00016 21.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) cNMP_binding PF00027.29 gi|389849221|ref|YP_006351457.1| - 0.011 15.7 0.1 0.022 14.8 0.0 1.6 1 1 0 1 1 1 0 Cyclic nucleotide-binding domain Cupin_1 PF00190.22 gi|389849221|ref|YP_006351457.1| - 0.02 14.5 0.0 0.041 13.5 0.0 1.4 1 1 0 1 1 1 0 Cupin HutD PF05962.11 gi|389849221|ref|YP_006351457.1| - 0.092 12.7 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 HutD Arg_decarbox_C PF17944.1 gi|389849222|ref|YP_006351458.1| - 0.008 16.7 0.4 0.02 15.4 0.3 1.6 1 1 1 2 2 2 1 Arginine decarboxylase C-terminal helical extension MmlI PF09448.10 gi|389849223|ref|YP_006351459.1| - 2.7e-17 63.2 0.2 7.8e-16 58.6 0.2 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|389849223|ref|YP_006351459.1| - 7.5e-16 59.1 0.4 1.5e-15 58.1 0.4 1.5 1 1 0 1 1 1 1 EthD domain IclR PF01614.18 gi|389849224|ref|YP_006351460.1| - 3e-29 101.4 0.0 5.1e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389849224|ref|YP_006351460.1| - 1.9e-13 50.0 0.3 1.3e-11 44.1 0.3 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389849224|ref|YP_006351460.1| - 2.2e-09 36.7 0.1 5.5e-09 35.4 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849224|ref|YP_006351460.1| - 5.1e-09 35.9 0.0 1.1e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389849224|ref|YP_006351460.1| - 2.6e-08 33.8 0.1 5.4e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389849224|ref|YP_006351460.1| - 1.3e-07 31.4 0.0 2.8e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389849224|ref|YP_006351460.1| - 2.9e-07 30.3 0.0 6.4e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849224|ref|YP_006351460.1| - 8e-06 25.7 0.1 2.3e-05 24.3 0.0 1.8 2 0 0 2 2 1 1 HTH domain Fe_dep_repress PF01325.19 gi|389849224|ref|YP_006351460.1| - 6.4e-05 23.1 0.0 0.00014 22.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|389849224|ref|YP_006351460.1| - 0.00016 21.6 0.0 0.0005 20.0 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|389849224|ref|YP_006351460.1| - 0.00044 20.2 0.0 0.00095 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|389849224|ref|YP_006351460.1| - 0.00049 19.9 0.1 0.0015 18.3 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|389849224|ref|YP_006351460.1| - 0.0016 18.3 0.0 0.004 17.0 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|389849224|ref|YP_006351460.1| - 0.0049 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|389849224|ref|YP_006351460.1| - 0.0049 16.6 0.1 0.031 14.1 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|389849224|ref|YP_006351460.1| - 0.0066 16.2 0.0 0.022 14.5 0.0 1.9 2 0 0 2 2 1 1 LexA DNA binding domain BLACT_WH PF17778.1 gi|389849224|ref|YP_006351460.1| - 0.008 16.1 0.3 0.038 14.0 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain HTH_DeoR PF08220.12 gi|389849224|ref|YP_006351460.1| - 0.01 15.6 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|389849224|ref|YP_006351460.1| - 0.015 15.2 0.0 0.056 13.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|389849224|ref|YP_006351460.1| - 0.015 14.9 0.4 0.049 13.3 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|389849224|ref|YP_006351460.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HemN_C PF06969.16 gi|389849224|ref|YP_006351460.1| - 0.024 14.7 0.3 0.23 11.5 0.0 2.5 1 1 1 2 2 2 0 HemN C-terminal domain Crp PF00325.20 gi|389849224|ref|YP_006351460.1| - 0.04 13.6 0.3 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|389849224|ref|YP_006351460.1| - 0.047 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|389849224|ref|YP_006351460.1| - 0.073 13.1 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|389849224|ref|YP_006351460.1| - 0.078 12.9 0.1 0.35 10.8 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain z-alpha PF02295.17 gi|389849224|ref|YP_006351460.1| - 0.088 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_1 PF00126.27 gi|389849224|ref|YP_006351460.1| - 0.1 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|389849224|ref|YP_006351460.1| - 0.13 12.1 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain DUF2520 PF10728.9 gi|389849224|ref|YP_006351460.1| - 0.16 11.7 0.2 0.51 10.1 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF2520) ECH_1 PF00378.20 gi|389849226|ref|YP_006351462.1| - 3.1e-67 226.5 0.1 3.5e-67 226.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389849226|ref|YP_006351462.1| - 2e-38 132.7 0.1 2.8e-31 109.2 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|389849227|ref|YP_006351463.1| - 2.3e-62 210.1 1.9 3.3e-62 209.6 1.9 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|389849227|ref|YP_006351463.1| - 1.4e-30 105.7 0.0 3.2e-30 104.6 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|389849227|ref|YP_006351463.1| - 1.2e-05 25.3 0.2 2.4e-05 24.4 0.2 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|389849227|ref|YP_006351463.1| - 0.00028 21.1 3.4 0.00028 21.1 3.4 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|389849227|ref|YP_006351463.1| - 0.0017 18.0 0.9 0.003 17.2 0.3 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|389849227|ref|YP_006351463.1| - 0.005 17.4 2.6 0.044 14.4 2.6 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|389849227|ref|YP_006351463.1| - 0.014 14.7 0.2 0.045 13.1 0.5 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Thiolase_N PF00108.23 gi|389849228|ref|YP_006351464.1| - 2.2e-58 197.7 0.0 3.2e-57 193.9 0.0 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389849228|ref|YP_006351464.1| - 8.4e-51 170.8 0.1 1.3e-50 170.2 0.1 1.3 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|389849228|ref|YP_006351464.1| - 0.03 14.5 0.0 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.8 gi|389849229|ref|YP_006351465.1| - 3.6e-10 39.5 3.5 7.3e-10 38.5 3.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.10 gi|389849229|ref|YP_006351465.1| - 0.0075 16.4 0.4 0.0075 16.4 0.4 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OB_aCoA_assoc PF01796.17 gi|389849229|ref|YP_006351465.1| - 0.017 15.1 1.8 0.051 13.6 1.8 1.9 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|389849230|ref|YP_006351466.1| - 2.8e-25 89.1 0.1 9.2e-25 87.5 0.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389849230|ref|YP_006351466.1| - 3.6e-11 42.8 0.1 1.4e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389849230|ref|YP_006351466.1| - 7.3e-07 29.0 2.1 7.3e-07 29.0 2.1 2.2 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|389849230|ref|YP_006351466.1| - 0.061 13.2 7.2 0.25 11.2 0.4 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAMSAP_CKK PF08683.11 gi|389849230|ref|YP_006351466.1| - 0.15 12.3 0.0 0.97 9.6 0.0 2.3 3 0 0 3 3 3 0 Microtubule-binding calmodulin-regulated spectrin-associated Ketoacyl-synt_C PF02801.22 gi|389849230|ref|YP_006351466.1| - 0.63 10.1 3.2 2.7 8.0 0.0 3.0 3 1 1 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain AMP-binding_C_2 PF14535.6 gi|389849231|ref|YP_006351467.1| - 1.6e-22 79.6 0.0 3.8e-22 78.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|389849231|ref|YP_006351467.1| - 2.2e-16 59.5 0.3 3.8e-15 55.4 0.3 2.0 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|389849231|ref|YP_006351467.1| - 0.0013 17.9 0.1 0.23 10.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|389849231|ref|YP_006351467.1| - 0.0014 17.6 0.0 0.008 15.1 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter 4HBT PF03061.22 gi|389849232|ref|YP_006351468.1| - 4.6e-15 55.7 1.0 7.6e-15 55.0 0.9 1.5 1 1 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|389849232|ref|YP_006351468.1| - 1.5e-08 34.8 0.0 2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 gi|389849232|ref|YP_006351468.1| - 0.0086 15.3 0.3 0.012 14.9 0.3 1.3 1 1 0 1 1 1 1 Polyketide synthase dehydratase 4HBT_3 PF13622.6 gi|389849232|ref|YP_006351468.1| - 0.01 16.1 0.4 0.014 15.7 0.4 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|389849233|ref|YP_006351469.1| - 1.3e-18 66.7 0.0 1.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389849233|ref|YP_006351469.1| - 0.0038 17.3 0.2 0.012 15.8 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Glyoxalase_4 PF13669.6 gi|389849234|ref|YP_006351470.1| - 3.4e-17 62.7 0.3 4.3e-17 62.3 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|389849234|ref|YP_006351470.1| - 3.7e-06 27.2 0.2 4.4e-06 26.9 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|389849234|ref|YP_006351470.1| - 0.0036 18.1 2.0 0.66 10.8 0.1 2.1 1 1 1 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.25 gi|389849234|ref|YP_006351470.1| - 0.02 15.1 0.0 0.056 13.6 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Bac_luciferase PF00296.20 gi|389849235|ref|YP_006351471.1| - 2.7e-53 181.4 0.2 3.2e-53 181.2 0.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Peripla_BP_6 PF13458.6 gi|389849236|ref|YP_006351472.1| - 4.7e-68 230.4 6.3 6.2e-68 230.0 6.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|389849236|ref|YP_006351472.1| - 6.3e-32 111.0 0.2 7.6e-32 110.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|389849236|ref|YP_006351472.1| - 1.2e-13 50.9 0.0 1.7e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.13 gi|389849236|ref|YP_006351472.1| - 0.043 13.8 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family DUF1953 PF09196.10 gi|389849236|ref|YP_006351472.1| - 0.19 11.5 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1953) BPD_transp_2 PF02653.16 gi|389849238|ref|YP_006351474.1| - 4.7e-82 275.2 76.7 5.1e-47 160.3 34.7 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component DUF2749 PF10907.8 gi|389849238|ref|YP_006351474.1| - 0.57 10.4 3.6 2.1 8.6 3.6 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) ABC_tran PF00005.27 gi|389849240|ref|YP_006351476.1| - 6.6e-29 101.2 0.0 8.7e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|389849240|ref|YP_006351476.1| - 7.1e-09 35.4 0.1 1.8e-08 34.1 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|389849240|ref|YP_006351476.1| - 0.0001 22.2 2.2 0.023 14.5 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389849240|ref|YP_006351476.1| - 0.0012 19.4 0.0 0.0014 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389849240|ref|YP_006351476.1| - 0.0033 17.1 0.1 0.0062 16.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389849240|ref|YP_006351476.1| - 0.014 15.1 0.1 0.023 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|389849240|ref|YP_006351476.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|389849240|ref|YP_006351476.1| - 0.16 12.2 0.1 0.31 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|389849240|ref|YP_006351476.1| - 0.17 11.3 0.2 0.92 8.9 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|389849240|ref|YP_006351476.1| - 0.25 11.5 0.9 0.51 10.4 0.9 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|389849240|ref|YP_006351476.1| - 0.45 10.1 1.6 0.84 9.2 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|389849242|ref|YP_006351478.1| - 4.4e-32 111.5 0.0 6.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849242|ref|YP_006351478.1| - 1.2e-08 35.2 1.4 0.00077 19.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849242|ref|YP_006351478.1| - 0.0053 16.2 0.8 0.21 11.0 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|389849242|ref|YP_006351478.1| - 0.01 16.3 0.5 0.067 13.6 0.4 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|389849242|ref|YP_006351478.1| - 0.014 15.0 0.1 0.035 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|389849242|ref|YP_006351478.1| - 0.014 15.7 2.0 0.15 12.4 0.2 2.6 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.7 0.5 0.021 15.2 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.0 0.1 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.0 0.5 0.027 14.2 0.5 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389849242|ref|YP_006351478.1| - 0.041 13.6 0.2 0.084 12.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MukB PF04310.12 gi|389849242|ref|YP_006351478.1| - 0.05 13.4 0.2 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|389849242|ref|YP_006351478.1| - 0.052 13.4 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|389849242|ref|YP_006351478.1| - 0.066 13.7 0.2 0.09 13.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|389849242|ref|YP_006351478.1| - 0.087 12.7 0.8 0.38 10.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|389849242|ref|YP_006351478.1| - 0.09 11.9 0.1 0.18 10.9 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AIG1 PF04548.16 gi|389849242|ref|YP_006351478.1| - 0.13 11.6 1.2 0.27 10.5 0.3 1.8 2 0 0 2 2 2 0 AIG1 family AAA_7 PF12775.7 gi|389849242|ref|YP_006351478.1| - 0.22 11.0 0.1 0.35 10.4 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|389849242|ref|YP_006351478.1| - 0.23 11.5 2.1 0.49 10.5 2.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AMP-binding_C_2 PF14535.6 gi|389849243|ref|YP_006351479.1| - 5.8e-22 77.8 0.0 1.1e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|389849243|ref|YP_006351479.1| - 4.3e-15 55.2 0.2 1.2e-14 53.8 0.2 1.7 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|389849243|ref|YP_006351479.1| - 0.0015 17.5 0.0 0.026 13.4 0.0 2.1 2 0 0 2 2 2 1 GH3 auxin-responsive promoter LuxE PF04443.12 gi|389849243|ref|YP_006351479.1| - 0.055 12.5 0.0 5.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE 4HBT PF03061.22 gi|389849244|ref|YP_006351480.1| - 5.4e-14 52.3 0.2 7.6e-14 51.8 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|389849244|ref|YP_006351480.1| - 8.5e-06 25.9 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|389849244|ref|YP_006351480.1| - 0.0011 19.2 0.1 0.0016 18.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Aldedh PF00171.22 gi|389849245|ref|YP_006351481.1| - 9.9e-179 594.7 0.1 1.1e-178 594.5 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.14 gi|389849245|ref|YP_006351481.1| - 0.032 14.6 0.1 0.14 12.6 0.1 2.1 1 1 0 1 1 1 0 YCII-related domain FeS_assembly_P PF01883.19 gi|389849247|ref|YP_006351483.1| - 5.2e-11 42.6 0.1 2e-10 40.7 0.1 1.9 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|389849248|ref|YP_006351484.1| - 2.2e-60 204.1 0.7 2.9e-60 203.7 0.7 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|389849248|ref|YP_006351484.1| - 3e-07 30.3 0.2 8.5e-07 28.9 0.1 1.7 1 1 0 2 2 2 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PaaB PF06243.11 gi|389849249|ref|YP_006351485.1| - 1.6e-19 69.9 0.0 2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|389849250|ref|YP_006351486.1| - 1.9e-71 240.3 1.6 2.4e-71 240.0 1.6 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.12 gi|389849251|ref|YP_006351487.1| - 1.2e-20 73.0 0.0 1.8e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389849251|ref|YP_006351487.1| - 8.4e-10 38.7 2.4 1.3e-09 38.1 2.4 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|389849251|ref|YP_006351487.1| - 0.0037 16.8 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389849251|ref|YP_006351487.1| - 0.033 14.1 0.0 0.081 12.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|389849251|ref|YP_006351487.1| - 0.065 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ECH_1 PF00378.20 gi|389849252|ref|YP_006351488.1| - 1.1e-58 198.5 0.1 1.3e-58 198.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389849252|ref|YP_006351488.1| - 4.6e-31 108.5 0.1 5.4e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Amidohydro_2 PF04909.14 gi|389849253|ref|YP_006351489.1| - 6.1e-52 177.2 1.9 9.3e-52 176.6 1.9 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|389849253|ref|YP_006351489.1| - 0.0015 18.0 0.0 0.015 14.6 0.0 2.0 2 0 0 2 2 2 1 TatD related DNase Peripla_BP_2 PF01497.18 gi|389849254|ref|YP_006351490.1| - 4.4e-11 42.8 0.0 6.8e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849254|ref|YP_006351490.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|389849254|ref|YP_006351490.1| - 0.2 11.7 5.5 0.34 10.9 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DUF2268 PF10026.9 gi|389849255|ref|YP_006351491.1| - 0.0038 16.8 0.0 0.0053 16.3 0.0 1.1 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 gi|389849255|ref|YP_006351491.1| - 0.16 11.8 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Antimicrobial_8 PF08103.11 gi|389849255|ref|YP_006351491.1| - 0.56 10.5 2.3 1.3 9.3 2.3 1.6 1 0 0 1 1 1 0 Uperin family rve_3 PF13683.6 gi|389849256|ref|YP_006351492.1| - 2.2e-07 30.5 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389849256|ref|YP_006351492.1| - 0.049 13.7 0.0 0.049 13.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2384) BLM_N PF16202.5 gi|389849257|ref|YP_006351493.1| - 0.16 11.0 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal region of Bloom syndrome protein DDE_Tnp_IS240 PF13610.6 gi|389849259|ref|YP_006351495.1| - 1.7e-05 25.1 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|389849260|ref|YP_006351496.1| - 0.072 12.6 0.0 0.083 12.3 0.0 1.0 1 0 0 1 1 1 0 Transposase IS66 family DUF4162 PF13732.6 gi|389849262|ref|YP_006351498.1| - 0.019 15.7 0.1 0.024 15.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) LTD PF00932.19 gi|389849263|ref|YP_006351499.1| - 1.4e-06 28.6 0.0 1.8e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Methyltransf_25 PF13649.6 gi|389849264|ref|YP_006351500.1| - 4.1e-14 53.1 0.0 6.1e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389849264|ref|YP_006351500.1| - 9.4e-12 45.4 0.0 1.9e-11 44.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|389849264|ref|YP_006351500.1| - 9.8e-11 41.4 0.0 1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|389849264|ref|YP_006351500.1| - 3e-10 40.2 0.0 7e-10 39.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389849264|ref|YP_006351500.1| - 1.9e-09 37.2 0.0 2.6e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|389849264|ref|YP_006351500.1| - 3e-08 33.6 0.0 3.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389849264|ref|YP_006351500.1| - 5.4e-05 23.9 0.1 0.00011 22.8 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389849264|ref|YP_006351500.1| - 0.00024 20.7 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|389849264|ref|YP_006351500.1| - 0.0014 18.3 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|389849264|ref|YP_006351500.1| - 0.0016 18.0 0.0 0.0018 17.9 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase XPB_DRD PF18458.1 gi|389849264|ref|YP_006351500.1| - 0.038 13.9 0.4 1.2 9.1 0.1 2.8 2 0 0 2 2 2 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF938 PF06080.12 gi|389849264|ref|YP_006351500.1| - 0.041 13.6 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Cons_hypoth95 PF03602.15 gi|389849264|ref|YP_006351500.1| - 0.045 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Abhydrolase_1 PF00561.20 gi|389849265|ref|YP_006351501.1| - 3.7e-25 89.0 0.0 9.6e-18 64.7 0.0 2.0 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389849265|ref|YP_006351501.1| - 8.2e-19 69.1 0.2 1.1e-18 68.7 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389849265|ref|YP_006351501.1| - 8.8e-17 61.2 0.0 1.3e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|389849265|ref|YP_006351501.1| - 5.9e-06 25.2 0.0 7.4e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 gi|389849265|ref|YP_006351501.1| - 0.0046 16.7 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|389849265|ref|YP_006351501.1| - 0.062 13.4 0.1 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 Thioesterase domain Peptidase_S15 PF02129.18 gi|389849265|ref|YP_006351501.1| - 0.082 12.5 0.1 0.63 9.6 0.1 2.1 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) UPF0227 PF05728.12 gi|389849265|ref|YP_006351501.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Esterase PF00756.20 gi|389849265|ref|YP_006351501.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative esterase FKBP_C PF00254.28 gi|389849266|ref|YP_006351502.1| - 9e-24 83.6 0.1 1.3e-23 83.2 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NADH_oxidored PF08040.11 gi|389849267|ref|YP_006351503.1| - 0.16 11.7 1.5 8.6 6.1 0.2 2.7 2 1 0 2 2 2 0 MNLL subunit BicD PF09730.9 gi|389849268|ref|YP_006351504.1| - 0.00023 19.7 0.5 0.00034 19.2 0.5 1.3 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Laminin_II PF06009.12 gi|389849268|ref|YP_006351504.1| - 0.00044 20.3 0.6 0.0015 18.6 0.6 1.8 1 0 0 1 1 1 1 Laminin Domain II HHH_8 PF14716.6 gi|389849268|ref|YP_006351504.1| - 0.057 13.8 1.3 1.5 9.2 0.1 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix domain FUSC PF04632.12 gi|389849268|ref|YP_006351504.1| - 0.79 8.2 15.0 0.032 12.8 8.1 1.8 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF4355 PF14265.6 gi|389849268|ref|YP_006351504.1| - 1 9.6 5.6 20 5.4 2.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) Spc7 PF08317.11 gi|389849268|ref|YP_006351504.1| - 3.7 6.3 8.8 1.5 7.6 2.9 2.3 2 1 0 3 3 3 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|389849268|ref|YP_006351504.1| - 8.5 6.5 12.2 0.6 10.2 3.7 3.0 4 0 0 4 4 4 0 TPR/MLP1/MLP2-like protein Usp PF00582.26 gi|389849269|ref|YP_006351505.1| - 5.8e-60 201.9 7.4 1e-29 103.9 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family EspB PF05802.11 gi|389849269|ref|YP_006351505.1| - 1.2 9.1 5.4 0.21 11.6 0.5 1.9 2 0 0 2 2 2 0 Enterobacterial EspB protein CobA_CobO_BtuR PF02572.15 gi|389849270|ref|YP_006351506.1| - 2.5e-53 180.9 0.0 2.9e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|389849270|ref|YP_006351506.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TM_helix PF05552.12 gi|389849271|ref|YP_006351507.1| - 0.045 13.7 1.2 0.33 11.0 0.2 2.4 2 0 0 2 2 2 0 Conserved TM helix DUF3094 PF11293.8 gi|389849271|ref|YP_006351507.1| - 0.13 12.0 0.2 24 4.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) PhoU PF01895.19 gi|389849273|ref|YP_006351509.1| - 4.9e-15 55.8 4.2 5.6e-09 36.4 0.3 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|389849273|ref|YP_006351509.1| - 0.0013 18.6 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TetR_C_22 PF17928.1 gi|389849273|ref|YP_006351509.1| - 0.042 14.2 0.3 0.11 12.8 0.3 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF2518 PF10726.9 gi|389849273|ref|YP_006351509.1| - 0.11 12.2 0.3 0.21 11.2 0.3 1.4 1 0 0 1 1 1 0 Protein of function (DUF2518) ABC_tran PF00005.27 gi|389849274|ref|YP_006351510.1| - 9.5e-31 107.1 0.0 1.6e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849274|ref|YP_006351510.1| - 2e-11 44.2 0.1 7.8e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849274|ref|YP_006351510.1| - 9.3e-08 31.8 0.4 1.4e-05 24.6 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389849274|ref|YP_006351510.1| - 2.6e-05 24.1 0.0 0.00031 20.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389849274|ref|YP_006351510.1| - 0.00025 21.3 0.0 0.0011 19.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389849274|ref|YP_006351510.1| - 0.00034 20.3 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849274|ref|YP_006351510.1| - 0.0007 20.0 0.5 0.0032 17.9 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389849274|ref|YP_006351510.1| - 0.00071 19.5 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|389849274|ref|YP_006351510.1| - 0.0035 17.0 0.2 0.02 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|389849274|ref|YP_006351510.1| - 0.0046 17.5 0.1 0.0092 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|389849274|ref|YP_006351510.1| - 0.0059 16.6 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain DeoRC PF00455.22 gi|389849274|ref|YP_006351510.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|389849274|ref|YP_006351510.1| - 0.019 14.7 0.2 0.96 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|389849274|ref|YP_006351510.1| - 0.032 13.8 0.0 0.095 12.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.18 gi|389849274|ref|YP_006351510.1| - 0.05 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|389849274|ref|YP_006351510.1| - 0.053 14.1 0.0 0.17 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|389849274|ref|YP_006351510.1| - 0.062 13.5 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|389849274|ref|YP_006351510.1| - 0.1 11.4 0.0 3.3 6.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NYN_YacP PF05991.11 gi|389849274|ref|YP_006351510.1| - 0.11 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 YacP-like NYN domain DUF5623 PF18536.1 gi|389849274|ref|YP_006351510.1| - 0.15 12.4 0.0 0.35 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) AAA PF00004.29 gi|389849274|ref|YP_006351510.1| - 0.17 12.3 0.0 1.5 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.15 gi|389849274|ref|YP_006351510.1| - 0.25 10.1 0.0 2.3 6.9 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|389849275|ref|YP_006351511.1| - 6.9e-24 84.6 11.2 6.9e-24 84.6 11.2 4.5 1 1 4 5 5 5 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389849276|ref|YP_006351512.1| - 6.2e-20 71.7 11.1 6.2e-20 71.7 11.1 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|389849277|ref|YP_006351513.1| - 4.6e-22 79.0 0.4 4.6e-22 79.0 0.4 1.5 2 0 0 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|389849277|ref|YP_006351513.1| - 1.7e-14 53.4 0.0 2.9e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|389849277|ref|YP_006351513.1| - 0.0062 16.3 0.5 0.012 15.4 0.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence FlaC_arch PF05377.11 gi|389849278|ref|YP_006351514.1| - 1.5e-07 31.7 0.4 0.1 13.0 0.0 3.9 4 0 0 4 4 3 2 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|389849278|ref|YP_006351514.1| - 7.6e-07 29.2 1.5 2.7 8.3 0.2 4.3 3 1 1 4 4 4 2 Haemolysin XhlA DUF1664 PF07889.12 gi|389849278|ref|YP_006351514.1| - 0.00018 21.5 2.2 1.7 8.7 0.1 3.6 3 1 0 3 3 3 1 Protein of unknown function (DUF1664) Tropomyosin PF00261.20 gi|389849278|ref|YP_006351514.1| - 0.00027 20.4 4.5 0.00056 19.4 0.3 2.4 2 1 1 3 3 3 1 Tropomyosin Spc7 PF08317.11 gi|389849278|ref|YP_006351514.1| - 0.00037 19.5 3.0 0.017 14.0 0.4 2.8 1 1 2 3 3 3 2 Spc7 kinetochore protein HSBP1 PF06825.12 gi|389849278|ref|YP_006351514.1| - 0.00041 20.1 2.6 11 6.0 0.2 4.3 4 0 0 4 4 4 0 Heat shock factor binding protein 1 DUF16 PF01519.16 gi|389849278|ref|YP_006351514.1| - 0.00057 20.3 0.3 10 6.7 0.1 3.4 2 1 1 3 3 3 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|389849278|ref|YP_006351514.1| - 0.0011 19.2 2.2 7.6 6.9 0.0 3.4 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|389849278|ref|YP_006351514.1| - 0.0037 17.7 11.0 4.7 7.7 1.3 4.6 2 1 3 5 5 4 1 Nucleopolyhedrovirus P10 protein TBCC_N PF16752.5 gi|389849278|ref|YP_006351514.1| - 0.0062 17.0 0.5 12 6.3 0.0 3.8 3 1 1 4 4 4 0 Tubulin-specific chaperone C N-terminal domain Laminin_II PF06009.12 gi|389849278|ref|YP_006351514.1| - 0.0066 16.5 5.6 0.24 11.4 0.6 3.3 1 1 2 3 3 3 2 Laminin Domain II DUF3037 PF11236.8 gi|389849278|ref|YP_006351514.1| - 0.0099 16.3 1.1 18 5.8 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3037) EzrA PF06160.12 gi|389849278|ref|YP_006351514.1| - 0.018 13.3 0.4 0.17 10.0 0.1 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|389849278|ref|YP_006351514.1| - 0.019 15.0 4.7 1.8 8.6 0.4 3.2 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2802 PF10975.8 gi|389849278|ref|YP_006351514.1| - 0.029 14.5 1.0 5.2 7.3 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2802) KASH_CCD PF14662.6 gi|389849278|ref|YP_006351514.1| - 0.07 12.9 0.5 0.57 10.0 0.0 2.4 3 0 0 3 3 3 0 Coiled-coil region of CCDC155 or KASH HR1 PF02185.16 gi|389849278|ref|YP_006351514.1| - 0.096 12.8 0.4 2.6 8.2 0.1 3.0 3 0 0 3 3 3 0 Hr1 repeat Noelin-1 PF12308.8 gi|389849278|ref|YP_006351514.1| - 0.12 12.4 0.1 1 9.4 0.0 2.4 2 1 1 3 3 3 0 Neurogenesis glycoprotein UPF0184 PF03670.13 gi|389849278|ref|YP_006351514.1| - 0.12 12.8 9.9 9.4 6.7 0.0 3.8 3 1 1 4 4 3 0 Uncharacterised protein family (UPF0184) DUF4795 PF16043.5 gi|389849278|ref|YP_006351514.1| - 0.12 11.9 0.5 0.61 9.7 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) Fez1 PF06818.15 gi|389849278|ref|YP_006351514.1| - 0.12 12.8 0.5 1.1 9.7 0.2 2.1 1 1 1 2 2 2 0 Fez1 CorA PF01544.18 gi|389849278|ref|YP_006351514.1| - 0.14 11.5 10.0 0.07 12.4 2.0 2.2 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein AAA_13 PF13166.6 gi|389849278|ref|YP_006351514.1| - 0.14 10.8 0.3 0.24 10.0 0.3 1.3 1 0 0 1 1 1 0 AAA domain L31 PF09784.9 gi|389849278|ref|YP_006351514.1| - 0.21 12.0 0.5 27 5.3 0.1 2.8 3 0 0 3 3 3 0 Mitochondrial ribosomal protein L31 Tropomyosin_1 PF12718.7 gi|389849278|ref|YP_006351514.1| - 0.25 11.5 7.7 0.65 10.1 1.8 3.1 2 1 0 2 2 2 0 Tropomyosin like MtrG PF04210.13 gi|389849278|ref|YP_006351514.1| - 0.32 10.9 3.2 27 4.7 0.0 3.5 4 0 0 4 4 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Syntaxin-6_N PF09177.11 gi|389849278|ref|YP_006351514.1| - 0.44 11.1 7.1 2.5 8.7 3.4 3.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal LPP PF04728.13 gi|389849278|ref|YP_006351514.1| - 0.51 10.8 6.8 46 4.5 0.0 4.1 3 1 0 3 3 3 0 Lipoprotein leucine-zipper DUF948 PF06103.11 gi|389849278|ref|YP_006351514.1| - 0.88 9.9 10.8 31 4.9 0.9 3.9 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) ABC_tran_CTD PF16326.5 gi|389849278|ref|YP_006351514.1| - 1.2 9.5 7.1 18 5.7 0.2 3.8 3 1 0 3 3 3 0 ABC transporter C-terminal domain DUF2937 PF11157.8 gi|389849278|ref|YP_006351514.1| - 1.3 8.7 4.3 6.4 6.5 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2937) ATG16 PF08614.11 gi|389849278|ref|YP_006351514.1| - 2.1 8.5 11.6 12 6.1 0.1 3.2 3 0 0 3 3 3 0 Autophagy protein 16 (ATG16) SNARE PF05739.19 gi|389849278|ref|YP_006351514.1| - 2.3 8.3 5.5 3.7 7.6 0.4 3.3 3 0 0 3 3 3 0 SNARE domain DUF4164 PF13747.6 gi|389849278|ref|YP_006351514.1| - 2.3 8.5 11.2 9 6.7 5.2 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Sod_Fe_N PF00081.22 gi|389849279|ref|YP_006351515.1| - 1.4e-30 105.6 1.2 2.2e-30 104.9 1.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|389849279|ref|YP_006351515.1| - 5.5e-27 93.9 0.0 8.6e-27 93.3 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain TrmB PF01978.19 gi|389849280|ref|YP_006351516.1| - 0.0001 22.1 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389849280|ref|YP_006351516.1| - 0.00018 21.4 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|389849280|ref|YP_006351516.1| - 0.0022 18.3 0.0 0.0052 17.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|389849280|ref|YP_006351516.1| - 0.0042 17.1 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389849280|ref|YP_006351516.1| - 0.0087 16.2 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|389849280|ref|YP_006351516.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389849280|ref|YP_006351516.1| - 0.02 15.4 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|389849280|ref|YP_006351516.1| - 0.098 12.8 0.0 0.29 11.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) UCR_Fe-S_N PF10399.9 gi|389849281|ref|YP_006351517.1| - 0.52 9.7 3.1 0.42 10.0 0.4 2.2 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sugarporin_N PF11471.8 gi|389849282|ref|YP_006351518.1| - 0.67 10.0 3.0 0.59 10.1 0.9 2.0 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension MarR_2 PF12802.7 gi|389849283|ref|YP_006351519.1| - 5.5e-09 35.8 0.1 9.5e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389849283|ref|YP_006351519.1| - 1.3e-07 31.4 0.1 2.5e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849283|ref|YP_006351519.1| - 1.9e-07 30.9 0.2 3.5e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849283|ref|YP_006351519.1| - 3.7e-07 29.6 0.1 6.5e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389849283|ref|YP_006351519.1| - 1.8e-05 24.4 0.1 3e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|389849283|ref|YP_006351519.1| - 3.1e-05 23.6 0.7 7.9e-05 22.3 0.2 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849283|ref|YP_006351519.1| - 5.8e-05 22.9 0.0 9.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|389849283|ref|YP_006351519.1| - 0.00012 22.2 0.1 0.00023 21.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.11 gi|389849283|ref|YP_006351519.1| - 0.00013 21.4 0.2 0.0003 20.2 0.1 1.6 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) GntR PF00392.21 gi|389849283|ref|YP_006351519.1| - 0.00038 20.0 0.3 0.00064 19.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|389849283|ref|YP_006351519.1| - 0.00057 20.3 0.2 0.0015 19.0 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|389849283|ref|YP_006351519.1| - 0.002 18.0 0.1 0.0035 17.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|389849283|ref|YP_006351519.1| - 0.0057 16.6 0.2 0.011 15.7 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389849283|ref|YP_006351519.1| - 0.0083 16.2 0.2 0.015 15.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389849283|ref|YP_006351519.1| - 0.009 15.8 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 gi|389849283|ref|YP_006351519.1| - 0.014 15.8 0.2 0.032 14.6 0.2 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.6 gi|389849283|ref|YP_006351519.1| - 0.043 13.8 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|389849283|ref|YP_006351519.1| - 0.046 13.7 0.1 0.1 12.5 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TBPIP PF07106.13 gi|389849283|ref|YP_006351519.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Rrf2 PF02082.20 gi|389849283|ref|YP_006351519.1| - 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.12 gi|389849283|ref|YP_006351519.1| - 0.064 12.6 0.0 0.084 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit FUR PF01475.19 gi|389849283|ref|YP_006351519.1| - 0.08 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Phage_rep_O PF04492.13 gi|389849283|ref|YP_006351519.1| - 0.11 13.0 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O Lung_7-TM_R PF06814.13 gi|389849286|ref|YP_006351522.1| - 0.77 8.9 3.9 0.24 10.6 0.7 1.7 2 0 0 2 2 2 0 Lung seven transmembrane receptor DUF2384 PF09722.10 gi|389849287|ref|YP_006351523.1| - 0.026 14.6 0.2 0.042 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Multi_Drug_Res PF00893.19 gi|389849288|ref|YP_006351524.1| - 2.2e-25 89.2 2.7 2.9e-25 88.7 2.7 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|389849288|ref|YP_006351524.1| - 0.062 13.5 6.2 0.069 13.3 5.1 1.5 1 1 1 2 2 2 0 EamA-like transporter family TPT PF03151.16 gi|389849288|ref|YP_006351524.1| - 0.12 11.7 2.7 0.15 11.4 2.7 1.2 1 0 0 1 1 1 0 Triose-phosphate Transporter family TrmB PF01978.19 gi|389849289|ref|YP_006351525.1| - 4.8e-19 68.0 0.1 1e-18 67.0 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|389849289|ref|YP_006351525.1| - 0.0058 16.7 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|389849289|ref|YP_006351525.1| - 0.087 12.8 0.0 0.4 10.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family adh_short_C2 PF13561.6 gi|389849290|ref|YP_006351526.1| - 1.8e-68 230.6 6.9 2.2e-68 230.3 6.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849290|ref|YP_006351526.1| - 1.1e-60 204.5 1.3 1.3e-60 204.2 1.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849290|ref|YP_006351526.1| - 1.7e-19 70.5 1.2 2.7e-19 69.8 1.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849290|ref|YP_006351526.1| - 3.2e-06 26.8 0.4 5.6e-06 26.0 0.4 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|389849290|ref|YP_006351526.1| - 7.1e-05 22.8 8.0 0.00011 22.2 8.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|389849290|ref|YP_006351526.1| - 0.00023 21.4 0.2 0.00054 20.2 0.1 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 gi|389849290|ref|YP_006351526.1| - 0.0012 18.3 0.0 0.0023 17.4 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|389849290|ref|YP_006351526.1| - 0.005 16.0 0.0 0.0063 15.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|389849290|ref|YP_006351526.1| - 0.019 14.5 1.9 0.022 14.4 1.0 1.5 2 0 0 2 2 2 0 NmrA-like family THF_DHG_CYH_C PF02882.19 gi|389849290|ref|YP_006351526.1| - 0.024 13.9 0.4 0.074 12.4 0.1 1.9 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 gi|389849290|ref|YP_006351526.1| - 0.049 13.9 0.5 0.12 12.7 0.5 1.6 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|389849290|ref|YP_006351526.1| - 0.062 12.7 0.5 0.11 11.8 0.1 1.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LytR_C PF13399.6 gi|389849290|ref|YP_006351526.1| - 0.26 12.3 6.3 0.24 12.4 0.8 2.6 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Acyl_transf_1 PF00698.21 gi|389849291|ref|YP_006351527.1| - 9.8e-35 120.6 1.6 1.2e-34 120.2 1.6 1.0 1 0 0 1 1 1 1 Acyl transferase domain DUF2974 PF11187.8 gi|389849291|ref|YP_006351527.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) ACPS PF01648.20 gi|389849292|ref|YP_006351528.1| - 1.4e-15 57.4 0.0 1.6e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily ketoacyl-synt PF00109.26 gi|389849293|ref|YP_006351529.1| - 4.3e-51 173.9 7.8 4.5e-51 173.9 4.7 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|389849293|ref|YP_006351529.1| - 6e-31 106.9 2.1 1.6e-30 105.5 1.7 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 gi|389849293|ref|YP_006351529.1| - 5.1e-05 22.8 2.4 0.00011 21.6 0.3 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain PP-binding PF00550.25 gi|389849294|ref|YP_006351530.1| - 1.5e-13 50.8 0.7 1.7e-13 50.7 0.7 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site Ribosomal_L50 PF10501.9 gi|389849294|ref|YP_006351530.1| - 0.045 13.9 0.0 0.066 13.4 0.0 1.5 1 1 0 1 1 1 0 Ribosomal subunit 39S PP-binding_2 PF14573.6 gi|389849294|ref|YP_006351530.1| - 0.066 13.4 0.6 0.1 12.8 0.3 1.3 1 1 0 1 1 1 0 Acyl-carrier ADH_zinc_N PF00107.26 gi|389849295|ref|YP_006351531.1| - 2.4e-29 101.9 0.7 4.2e-29 101.2 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389849295|ref|YP_006351531.1| - 1e-23 84.9 0.7 1.8e-23 84.0 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389849295|ref|YP_006351531.1| - 1.6e-07 31.2 0.0 6.3e-07 29.3 0.0 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain YjeF_N PF03853.15 gi|389849295|ref|YP_006351531.1| - 0.033 14.1 0.7 0.07 13.0 0.7 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus adh_short PF00106.25 gi|389849295|ref|YP_006351531.1| - 0.058 12.8 0.9 0.092 12.2 0.9 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Ribonuc_red_sm PF00268.21 gi|389849296|ref|YP_006351532.1| - 3e-07 30.2 0.0 3.8e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|389849296|ref|YP_006351532.1| - 0.054 12.8 5.9 1.4 8.1 0.3 2.8 2 1 0 3 3 3 0 P-aminobenzoate N-oxygenase AurF Thiamine_BP PF01910.17 gi|389849297|ref|YP_006351533.1| - 6.6e-21 74.0 0.1 7.5e-21 73.9 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Ykof PF07615.11 gi|389849297|ref|YP_006351533.1| - 0.12 12.9 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 YKOF-related Family Response_reg PF00072.24 gi|389849298|ref|YP_006351534.1| - 7.2e-18 64.8 0.0 1.5e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|389849298|ref|YP_006351534.1| - 2.7e-11 43.9 0.7 8.4e-11 42.3 0.7 1.8 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389849298|ref|YP_006351534.1| - 0.00093 19.5 0.4 0.0025 18.2 0.4 1.8 1 1 0 1 1 1 1 GAF domain GAF PF01590.26 gi|389849298|ref|YP_006351534.1| - 0.0029 18.2 0.0 0.0042 17.7 0.0 1.3 1 0 0 1 1 1 1 GAF domain DRE2_N PF16803.5 gi|389849298|ref|YP_006351534.1| - 0.03 14.6 1.2 9.5 6.5 0.0 2.8 3 0 0 3 3 3 0 Fe-S cluster assembly protein DRE2 N-terminus Abhydrolase_1 PF00561.20 gi|389849299|ref|YP_006351535.1| - 2.6e-19 69.9 0.0 3.7e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|389849299|ref|YP_006351535.1| - 8.4e-13 48.3 0.0 1.5e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|389849299|ref|YP_006351535.1| - 7.7e-12 45.0 0.0 1.9e-06 27.3 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 HHH_5 PF14520.6 gi|389849299|ref|YP_006351535.1| - 5.5e-07 30.1 0.1 1.5e-06 28.7 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3141 PF11339.8 gi|389849299|ref|YP_006351535.1| - 2.8e-05 22.8 0.0 0.0016 17.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|389849299|ref|YP_006351535.1| - 5.4e-05 22.8 0.0 0.0013 18.3 0.1 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family PHB_depo_C PF06850.11 gi|389849299|ref|YP_006351535.1| - 0.00073 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF4332 PF14229.6 gi|389849299|ref|YP_006351535.1| - 0.0014 18.8 0.0 0.0037 17.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) FSH1 PF03959.13 gi|389849299|ref|YP_006351535.1| - 0.0016 18.2 0.0 0.0084 15.8 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Cdd1 PF11731.8 gi|389849299|ref|YP_006351535.1| - 0.004 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus Abhydrolase_6 PF12697.7 gi|389849299|ref|YP_006351535.1| - 0.0057 17.3 0.1 0.0088 16.7 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|389849299|ref|YP_006351535.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Usp PF00582.26 gi|389849301|ref|YP_006351537.1| - 3.9e-21 76.0 1.5 4.3e-21 75.9 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|389849301|ref|YP_006351537.1| - 0.032 13.7 0.8 0.046 13.2 0.6 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CTP_transf_like PF01467.26 gi|389849302|ref|YP_006351538.1| - 8.1e-09 35.8 0.1 1.7e-08 34.8 0.1 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|389849302|ref|YP_006351538.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 FAD synthetase CBS PF00571.28 gi|389849303|ref|YP_006351539.1| - 1.7e-19 70.0 1.2 3e-09 37.2 0.1 2.7 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|389849303|ref|YP_006351539.1| - 8.8e-19 67.3 0.0 1.5e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389849303|ref|YP_006351539.1| - 8.7e-06 25.9 0.0 2.2e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|389849303|ref|YP_006351539.1| - 0.0061 16.9 0.1 0.014 15.7 0.1 1.7 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|389849303|ref|YP_006351539.1| - 0.013 16.0 0.0 0.028 14.9 0.0 1.5 1 1 0 1 1 1 0 Thioesterase-like superfamily TALPID3 PF15324.6 gi|389849304|ref|YP_006351540.1| - 0.53 7.9 4.6 0.76 7.4 4.6 1.1 1 0 0 1 1 1 0 Hedgehog signalling target Copper-bind PF00127.20 gi|389849305|ref|YP_006351541.1| - 3.6e-08 33.7 0.0 5.1e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389849305|ref|YP_006351541.1| - 2.2e-05 24.5 0.0 7.3e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.15 gi|389849305|ref|YP_006351541.1| - 0.003 17.5 0.1 0.0051 16.8 0.1 1.5 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389849305|ref|YP_006351541.1| - 0.005 16.6 0.1 0.025 14.3 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase SoxE PF06525.11 gi|389849305|ref|YP_006351541.1| - 0.036 13.5 0.0 0.079 12.4 0.0 1.8 1 1 0 1 1 1 0 Sulfocyanin (SoxE) domain DUF3553 PF12073.8 gi|389849305|ref|YP_006351541.1| - 0.054 13.2 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) TAT_signal PF10518.9 gi|389849305|ref|YP_006351541.1| - 0.077 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TALPID3 PF15324.6 gi|389849305|ref|YP_006351541.1| - 0.25 8.9 5.5 0.25 9.0 5.5 1.1 1 0 0 1 1 1 0 Hedgehog signalling target DUF3558 PF12079.8 gi|389849305|ref|YP_006351541.1| - 2.9 7.9 12.3 5.6 6.9 12.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DUF1254 PF06863.12 gi|389849306|ref|YP_006351542.1| - 0.19 11.8 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) HxlR PF01638.17 gi|389849307|ref|YP_006351543.1| - 3.2e-26 91.0 0.0 3.9e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849307|ref|YP_006351543.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|389849307|ref|YP_006351543.1| - 0.074 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain BAT PF15915.5 gi|389849308|ref|YP_006351544.1| - 4.3e-43 146.9 4.7 4.3e-43 146.9 4.7 2.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|389849308|ref|YP_006351544.1| - 4.7e-37 126.4 0.0 8.8e-15 54.8 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|389849308|ref|YP_006351544.1| - 2.7e-27 95.0 0.0 6.2e-10 39.1 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389849308|ref|YP_006351544.1| - 4.7e-24 84.8 0.8 1.2e-08 35.2 0.0 4.3 3 1 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|389849308|ref|YP_006351544.1| - 2.5e-22 78.4 0.1 6.6e-22 77.1 0.1 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.7 gi|389849308|ref|YP_006351544.1| - 3.8e-21 74.6 0.0 6.8e-08 32.4 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|389849308|ref|YP_006351544.1| - 5.1e-19 68.4 0.0 2.3e-05 24.6 0.0 4.8 3 1 1 4 4 4 4 PAS fold GAF_2 PF13185.6 gi|389849308|ref|YP_006351544.1| - 1.9e-15 57.4 6.6 4e-07 30.4 0.3 3.0 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|389849308|ref|YP_006351544.1| - 3.5e-09 37.1 0.6 0.00059 20.2 0.1 2.7 2 1 0 2 2 2 2 GAF domain GAF PF01590.26 gi|389849308|ref|YP_006351544.1| - 0.00013 22.7 0.2 0.32 11.6 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.7 gi|389849308|ref|YP_006351544.1| - 0.0022 18.2 0.0 0.54 10.4 0.0 3.6 3 0 0 3 3 3 1 PAS fold Sigma70_r4_2 PF08281.12 gi|389849308|ref|YP_006351544.1| - 0.0026 17.4 0.6 0.0073 16.0 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 DUF134 PF02001.16 gi|389849308|ref|YP_006351544.1| - 0.01 16.4 0.0 0.028 15.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|389849308|ref|YP_006351544.1| - 0.015 14.8 0.0 0.041 13.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|389849308|ref|YP_006351544.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389849309|ref|YP_006351545.1| - 1.2e-05 25.1 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|389849309|ref|YP_006351545.1| - 8e-05 22.5 0.1 0.00015 21.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|389849309|ref|YP_006351545.1| - 0.00021 21.2 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|389849309|ref|YP_006351545.1| - 0.0005 20.1 0.1 0.001 19.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389849309|ref|YP_006351545.1| - 0.0006 19.6 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849309|ref|YP_006351545.1| - 0.00078 19.3 0.1 0.0022 17.8 0.1 1.8 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|389849309|ref|YP_006351545.1| - 0.00078 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|389849309|ref|YP_006351545.1| - 0.00092 19.3 0.4 0.0021 18.2 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389849309|ref|YP_006351545.1| - 0.0011 18.7 0.4 0.0021 17.8 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|389849309|ref|YP_006351545.1| - 0.002 17.6 0.1 0.0033 16.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389849309|ref|YP_006351545.1| - 0.0032 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|389849309|ref|YP_006351545.1| - 0.0055 16.7 0.1 0.0097 15.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|389849309|ref|YP_006351545.1| - 0.0084 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF1724 PF08350.10 gi|389849309|ref|YP_006351545.1| - 0.0085 16.2 0.3 0.021 14.9 0.0 1.9 2 1 0 2 2 1 1 Domain of unknown function (DUF1724) HTH_Crp_2 PF13545.6 gi|389849309|ref|YP_006351545.1| - 0.015 15.3 0.1 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|389849309|ref|YP_006351545.1| - 0.017 15.6 0.1 0.034 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|389849309|ref|YP_006351545.1| - 0.079 12.9 0.1 0.2 11.6 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|389849309|ref|YP_006351545.1| - 0.091 13.0 0.0 0.24 11.6 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|389849309|ref|YP_006351545.1| - 0.098 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|389849309|ref|YP_006351545.1| - 0.1 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MmgE_PrpD PF03972.14 gi|389849310|ref|YP_006351546.1| - 0.014 14.0 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 MmgE/PrpD family OstA PF03968.14 gi|389849311|ref|YP_006351547.1| - 0.0028 17.8 0.8 0.0081 16.3 0.8 1.8 1 1 0 1 1 1 1 OstA-like protein DUF2345 PF10106.9 gi|389849311|ref|YP_006351547.1| - 0.0046 16.8 0.0 0.98 9.3 0.0 2.8 2 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2345) FecR PF04773.13 gi|389849311|ref|YP_006351547.1| - 0.025 15.2 0.1 22 5.8 0.0 3.3 1 1 2 3 3 3 0 FecR protein DUF3540 PF12059.8 gi|389849311|ref|YP_006351547.1| - 0.047 13.5 0.0 5.7 6.7 0.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3540) DUF3060 PF11259.8 gi|389849311|ref|YP_006351547.1| - 0.078 12.7 4.7 4.1 7.2 0.2 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3060) Cadherin-like PF12733.7 gi|389849311|ref|YP_006351547.1| - 1.3 9.6 10.0 1.1e+03 0.2 10.0 3.3 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain BACK PF07707.15 gi|389849311|ref|YP_006351547.1| - 1.3 9.2 15.8 2.2 8.4 0.9 3.3 1 1 2 3 3 3 0 BTB And C-terminal Kelch DUF2218 PF09981.9 gi|389849312|ref|YP_006351548.1| - 6.8 7.1 19.8 2.2 8.7 0.3 6.0 3 2 2 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2218) HxlR PF01638.17 gi|389849314|ref|YP_006351550.1| - 1.8e-19 69.4 0.0 2.3e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|389849314|ref|YP_006351550.1| - 0.0076 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389849314|ref|YP_006351550.1| - 0.008 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389849314|ref|YP_006351550.1| - 0.015 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|389849314|ref|YP_006351550.1| - 0.025 14.7 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|389849314|ref|YP_006351550.1| - 0.047 14.2 0.0 0.077 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|389849314|ref|YP_006351550.1| - 0.049 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LPD38 PF18857.1 gi|389849314|ref|YP_006351550.1| - 0.14 12.3 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 HTH_12 PF08461.10 gi|389849314|ref|YP_006351550.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain APC_r PF05923.12 gi|389849314|ref|YP_006351550.1| - 1.3 8.8 5.6 21 5.0 0.0 3.4 3 0 0 3 3 3 0 APC repeat HxlR PF01638.17 gi|389849316|ref|YP_006351552.1| - 1.4e-27 95.3 0.1 1.8e-27 95.0 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849316|ref|YP_006351552.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|389849316|ref|YP_006351552.1| - 0.013 15.7 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|389849316|ref|YP_006351552.1| - 0.026 14.6 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HtaA PF04213.13 gi|389849318|ref|YP_006351554.1| - 5.2e-06 27.0 0.2 0.034 14.6 0.1 3.0 1 1 2 3 3 3 2 Htaa Glyco_hydro_65C PF03633.15 gi|389849318|ref|YP_006351554.1| - 2e-05 24.4 2.3 5.1 7.1 0.1 4.9 3 1 2 5 5 5 3 Glycosyl hydrolase family 65, C-terminal domain DUF4968 PF16338.5 gi|389849318|ref|YP_006351554.1| - 0.0041 17.4 0.2 0.59 10.5 0.0 3.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4968) FecR PF04773.13 gi|389849318|ref|YP_006351554.1| - 0.058 14.0 0.7 13 6.5 0.2 3.8 2 2 1 3 3 3 0 FecR protein Arch_flagellin PF01917.16 gi|389849318|ref|YP_006351554.1| - 0.27 11.4 5.9 0.14 12.3 0.4 2.4 1 1 1 2 2 2 0 Archaebacterial flagellin Phage_H_T_join PF05521.11 gi|389849319|ref|YP_006351555.1| - 0.063 13.8 0.9 0.39 11.3 0.9 2.4 1 0 0 1 1 1 0 Phage head-tail joining protein DUF5010_C PF18099.1 gi|389849319|ref|YP_006351555.1| - 5.6 7.1 6.5 4.4 7.5 2.6 2.7 2 0 0 2 2 2 0 DUF5010 C-terminal domain YabP PF07873.11 gi|389849320|ref|YP_006351556.1| - 0.4 10.5 3.2 25 4.8 0.0 3.6 4 0 0 4 4 4 0 YabP family DUF3868 PF12984.7 gi|389849320|ref|YP_006351556.1| - 2.5 7.9 9.8 47 3.8 0.0 5.8 5 2 2 7 7 7 0 Domain of unknown function, B. Theta Gene description (DUF3868) FecR PF04773.13 gi|389849321|ref|YP_006351557.1| - 0.052 14.2 0.0 43 4.8 0.0 4.5 3 1 1 5 5 5 0 FecR protein DUF3868 PF12984.7 gi|389849321|ref|YP_006351557.1| - 1 9.2 10.9 21 5.0 0.0 6.1 5 1 3 8 8 8 0 Domain of unknown function, B. Theta Gene description (DUF3868) DUF2807 PF10988.8 gi|389849321|ref|YP_006351557.1| - 3.5 7.4 12.6 0.34 10.7 2.6 3.4 1 1 2 3 3 3 0 Putative auto-transporter adhesin, head GIN domain HxlR PF01638.17 gi|389849322|ref|YP_006351558.1| - 2.9e-16 59.1 0.0 3.2e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849322|ref|YP_006351558.1| - 0.016 15.1 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|389849322|ref|YP_006351558.1| - 0.12 11.9 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain BAT PF15915.5 gi|389849323|ref|YP_006351559.1| - 1.6e-41 141.7 7.1 1.6e-41 141.7 7.1 3.5 3 1 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|389849323|ref|YP_006351559.1| - 1.1e-34 118.8 0.0 5.7e-13 49.0 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|389849323|ref|YP_006351559.1| - 1.5e-34 118.4 0.0 4.7e-11 42.7 0.0 4.2 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389849323|ref|YP_006351559.1| - 1.2e-23 83.4 5.6 4.3e-08 33.4 0.1 4.8 4 1 0 4 4 3 3 PAS fold HTH_10 PF04967.12 gi|389849323|ref|YP_006351559.1| - 2.8e-22 78.3 0.6 3.6e-21 74.7 0.1 2.6 2 0 0 2 2 2 1 HTH DNA binding domain PAS_8 PF13188.7 gi|389849323|ref|YP_006351559.1| - 4.5e-22 77.6 0.3 6e-07 29.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|389849323|ref|YP_006351559.1| - 3.1e-19 69.6 3.1 1.9e-09 38.0 0.0 3.0 3 0 0 3 3 2 2 GAF domain PAS_3 PF08447.12 gi|389849323|ref|YP_006351559.1| - 3.8e-10 39.9 0.0 0.025 14.9 0.0 4.6 3 1 1 4 4 4 2 PAS fold PAS_7 PF12860.7 gi|389849323|ref|YP_006351559.1| - 2.1e-07 31.1 0.1 0.25 11.5 0.0 4.6 4 1 0 4 4 4 2 PAS fold Sigma70_r4 PF04545.16 gi|389849323|ref|YP_006351559.1| - 6.3e-06 25.6 0.0 1.9e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|389849323|ref|YP_006351559.1| - 1.6e-05 25.2 0.1 0.013 15.9 0.0 2.7 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|389849323|ref|YP_006351559.1| - 0.00013 21.6 0.7 0.0019 17.8 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 GAF PF01590.26 gi|389849323|ref|YP_006351559.1| - 0.0036 17.9 0.0 0.23 12.1 0.0 3.2 2 1 0 2 2 2 1 GAF domain GerE PF00196.19 gi|389849323|ref|YP_006351559.1| - 0.016 14.8 0.0 0.045 13.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PAS_12 PF18095.1 gi|389849323|ref|YP_006351559.1| - 0.017 14.7 0.0 5.1 6.7 0.0 2.9 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain DUF3369 PF11849.8 gi|389849323|ref|YP_006351559.1| - 0.02 15.1 0.0 0.1 12.8 0.0 2.2 2 1 0 2 2 1 0 Domain of unknown function (DUF3369) HTH_Tnp_1_2 PF13022.6 gi|389849323|ref|YP_006351559.1| - 0.024 14.8 0.1 0.078 13.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_20 PF12840.7 gi|389849323|ref|YP_006351559.1| - 0.04 14.0 0.1 0.13 12.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|389849323|ref|YP_006351559.1| - 0.065 13.3 0.0 0.2 11.8 0.0 1.9 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.14 gi|389849323|ref|YP_006351559.1| - 0.11 12.8 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like PHINT_rpt PF14882.6 gi|389849323|ref|YP_006351559.1| - 0.18 12.1 0.1 0.88 9.9 0.0 2.1 2 0 0 2 2 2 0 Phage-integrase repeat unit MORN_2 PF07661.13 gi|389849324|ref|YP_006351560.1| - 1.5e-06 27.7 0.0 5.8 7.5 0.0 5.1 5 0 0 5 5 5 3 MORN repeat variant zinc_ribbon_9 PF14369.6 gi|389849324|ref|YP_006351560.1| - 0.016 15.4 0.5 0.046 14.0 0.5 1.8 1 0 0 1 1 1 0 zinc-ribbon DUF1936 PF09151.10 gi|389849324|ref|YP_006351560.1| - 0.064 13.2 3.6 16 5.5 0.2 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF1936) DUF3944 PF13099.6 gi|389849324|ref|YP_006351560.1| - 0.11 12.3 7.5 21 5.1 0.0 4.6 4 0 0 4 4 4 0 Domain of unknown function (DUF3944) DUF543 PF04418.12 gi|389849326|ref|YP_006351562.1| - 2.6 8.1 11.8 7 6.7 0.5 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF543) CMD PF02627.20 gi|389849328|ref|YP_006351564.1| - 1.5e-11 44.2 0.2 3.7e-10 39.7 0.1 2.2 1 1 2 3 3 3 2 Carboxymuconolactone decarboxylase family TauE PF01925.19 gi|389849329|ref|YP_006351565.1| - 4.7e-35 121.3 23.6 5.4e-35 121.1 23.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE FA_desaturase PF00487.24 gi|389849329|ref|YP_006351565.1| - 0.0073 16.2 4.1 0.2 11.4 0.1 2.1 2 0 0 2 2 2 2 Fatty acid desaturase adh_short_C2 PF13561.6 gi|389849330|ref|YP_006351566.1| - 2.1e-39 135.5 2.0 3.5e-39 134.8 2.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849330|ref|YP_006351566.1| - 1.3e-33 116.1 1.0 1.6e-33 115.8 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849330|ref|YP_006351566.1| - 1.8e-05 24.8 1.5 3.8e-05 23.7 1.5 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849330|ref|YP_006351566.1| - 0.00045 19.7 0.3 0.00085 18.9 0.3 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389849330|ref|YP_006351566.1| - 0.0038 16.7 0.1 0.0054 16.2 0.1 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase ADH_zinc_N PF00107.26 gi|389849330|ref|YP_006351566.1| - 0.0061 16.5 1.2 0.012 15.6 1.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|389849330|ref|YP_006351566.1| - 0.057 13.0 0.3 0.098 12.2 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.17 gi|389849330|ref|YP_006351566.1| - 0.27 10.3 2.8 0.37 9.8 2.8 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|389849330|ref|YP_006351566.1| - 1.7 8.5 4.7 27 4.6 4.7 2.2 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patatin PF01734.22 gi|389849331|ref|YP_006351567.1| - 7.8e-17 62.1 0.3 6.1e-16 59.2 0.3 2.0 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.14 gi|389849332|ref|YP_006351568.1| - 2.1e-53 181.5 2.2 3.1e-53 180.9 2.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849332|ref|YP_006351568.1| - 2e-26 92.4 0.4 4e-26 91.4 0.4 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|389849332|ref|YP_006351568.1| - 5.5e-16 58.9 5.2 6.7e-15 55.4 0.1 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389849332|ref|YP_006351568.1| - 8.1e-12 45.0 0.7 9.8e-11 41.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389849332|ref|YP_006351568.1| - 1e-06 28.1 3.3 3.3e-06 26.4 3.3 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|389849332|ref|YP_006351568.1| - 1.1e-05 24.8 0.0 0.0013 18.0 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 gi|389849332|ref|YP_006351568.1| - 0.00014 21.3 1.7 0.00019 20.9 0.3 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|389849332|ref|YP_006351568.1| - 0.00026 20.9 0.5 0.38 10.6 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|389849332|ref|YP_006351568.1| - 0.0022 17.2 0.4 0.0022 17.2 0.4 2.2 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|389849332|ref|YP_006351568.1| - 0.019 13.7 0.5 7.1 5.2 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein DUF2647 PF10839.8 gi|389849332|ref|YP_006351568.1| - 0.051 13.6 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) XdhC_C PF13478.6 gi|389849332|ref|YP_006351568.1| - 0.17 12.4 1.4 8.6 6.9 0.1 3.4 3 1 0 3 3 3 0 XdhC Rossmann domain MarR_2 PF12802.7 gi|389849333|ref|YP_006351569.1| - 1.7e-09 37.4 0.0 5.5e-09 35.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389849333|ref|YP_006351569.1| - 1.4e-08 34.4 0.3 3.8e-08 33.0 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389849333|ref|YP_006351569.1| - 2.4e-07 30.5 0.0 3.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389849333|ref|YP_006351569.1| - 2.3e-06 27.5 0.1 4.6e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389849333|ref|YP_006351569.1| - 7.2e-06 25.8 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849333|ref|YP_006351569.1| - 2.3e-05 23.9 0.0 4.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|389849333|ref|YP_006351569.1| - 2.5e-05 24.7 0.0 0.00019 21.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|389849333|ref|YP_006351569.1| - 7.6e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain HTH_5 PF01022.20 gi|389849333|ref|YP_006351569.1| - 9.5e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389849333|ref|YP_006351569.1| - 0.00029 20.8 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|389849333|ref|YP_006351569.1| - 0.0035 17.3 0.0 0.0062 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|389849333|ref|YP_006351569.1| - 0.0058 16.6 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_31 PF13560.6 gi|389849333|ref|YP_006351569.1| - 0.03 14.7 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389849333|ref|YP_006351569.1| - 0.03 14.5 0.1 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TnsD PF15978.5 gi|389849333|ref|YP_006351569.1| - 0.037 13.0 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_DeoR PF08220.12 gi|389849333|ref|YP_006351569.1| - 0.071 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389849333|ref|YP_006351569.1| - 0.077 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_CodY PF08222.11 gi|389849333|ref|YP_006351569.1| - 0.077 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain AbiEi_4 PF13338.6 gi|389849333|ref|YP_006351569.1| - 0.099 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin GntR PF00392.21 gi|389849333|ref|YP_006351569.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|389849333|ref|YP_006351569.1| - 0.2 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain TAT_signal PF10518.9 gi|389849335|ref|YP_006351571.1| - 0.11 12.4 2.0 0.21 11.5 2.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MOSC PF03473.17 gi|389849336|ref|YP_006351572.1| - 4.1e-26 91.5 0.0 1.2e-25 90.1 0.0 1.7 2 0 0 2 2 2 1 MOSC domain 3-alpha PF03475.14 gi|389849336|ref|YP_006351572.1| - 3e-09 36.6 0.5 6.3e-09 35.6 0.5 1.6 1 0 0 1 1 1 1 3-alpha domain Troponin PF00992.20 gi|389849337|ref|YP_006351573.1| - 0.062 13.6 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 Troponin Beta_helix PF13229.6 gi|389849338|ref|YP_006351574.1| - 1.9e-32 112.3 45.5 7.4e-14 51.9 8.2 5.4 3 1 2 5 5 5 4 Right handed beta helix region NosD PF05048.13 gi|389849338|ref|YP_006351574.1| - 3.3e-20 72.4 27.0 8.1e-07 28.6 1.2 5.3 3 1 2 5 5 5 4 Periplasmic copper-binding protein (NosD) Peripla_BP_2 PF01497.18 gi|389849339|ref|YP_006351575.1| - 2.9e-16 59.8 0.0 4.1e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849339|ref|YP_006351575.1| - 0.00015 21.4 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M10 PF00413.24 gi|389849341|ref|YP_006351577.1| - 2.3e-06 27.6 2.8 0.0003 20.7 0.2 3.0 2 1 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.6 gi|389849341|ref|YP_006351577.1| - 0.012 16.2 0.0 0.023 15.2 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|389849341|ref|YP_006351577.1| - 0.019 14.6 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Thiol_cytolys_C PF17440.2 gi|389849341|ref|YP_006351577.1| - 0.022 14.9 2.7 0.055 13.7 2.7 1.6 1 0 0 1 1 1 0 Thiol-activated cytolysin beta sandwich domain Astacin PF01400.24 gi|389849341|ref|YP_006351577.1| - 0.053 13.1 0.7 0.42 10.2 0.3 2.5 2 1 0 2 2 2 0 Astacin (Peptidase family M12A) Reprolysin_2 PF13574.6 gi|389849341|ref|YP_006351577.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like MacB_PCD PF12704.7 gi|389849342|ref|YP_006351578.1| - 4.6e-13 50.0 6.2 4.6e-13 50.0 6.2 2.1 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389849342|ref|YP_006351578.1| - 5.6e-12 46.0 0.6 5.6e-12 46.0 0.6 2.9 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|389849342|ref|YP_006351578.1| - 0.002 17.0 0.6 0.002 17.0 0.6 1.7 2 0 0 2 2 2 1 Lipopolysaccharide export system permease LptF/LptG OppC_N PF12911.7 gi|389849342|ref|YP_006351578.1| - 0.12 12.4 0.2 0.39 10.7 0.2 1.9 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF4118 PF13493.6 gi|389849342|ref|YP_006351578.1| - 0.97 9.3 8.9 0.2 11.5 4.7 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4118) ABC_tran PF00005.27 gi|389849343|ref|YP_006351579.1| - 3.2e-39 134.6 0.0 8.9e-39 133.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389849343|ref|YP_006351579.1| - 1.6e-06 28.1 0.3 0.00088 19.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389849343|ref|YP_006351579.1| - 9.2e-06 25.3 0.1 1.7e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389849343|ref|YP_006351579.1| - 1.3e-05 24.7 0.1 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389849343|ref|YP_006351579.1| - 5.8e-05 23.5 0.1 0.0001 22.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389849343|ref|YP_006351579.1| - 0.00018 21.5 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|389849343|ref|YP_006351579.1| - 0.00029 21.4 0.0 0.00051 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389849343|ref|YP_006351579.1| - 0.0021 18.3 0.2 0.028 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389849343|ref|YP_006351579.1| - 0.0042 16.8 0.3 0.036 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|389849343|ref|YP_006351579.1| - 0.01 15.6 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|389849343|ref|YP_006351579.1| - 0.01 16.0 0.8 0.026 14.7 0.8 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|389849343|ref|YP_006351579.1| - 0.019 15.0 3.0 0.036 14.2 0.5 2.4 2 1 1 3 3 3 0 50S ribosome-binding GTPase AAA_10 PF12846.7 gi|389849343|ref|YP_006351579.1| - 0.021 13.8 0.0 2.6 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.6 gi|389849343|ref|YP_006351579.1| - 0.032 13.8 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|389849343|ref|YP_006351579.1| - 0.044 12.8 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|389849343|ref|YP_006351579.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_15 PF13175.6 gi|389849343|ref|YP_006351579.1| - 0.073 12.8 0.0 0.089 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|389849343|ref|YP_006351579.1| - 0.085 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|389849343|ref|YP_006351579.1| - 0.093 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|389849343|ref|YP_006351579.1| - 0.11 12.6 0.0 0.75 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|389849343|ref|YP_006351579.1| - 0.13 12.3 0.5 0.5 10.4 0.1 1.9 2 0 0 2 2 2 0 Dynamin family NB-ARC PF00931.22 gi|389849343|ref|YP_006351579.1| - 0.18 11.0 0.0 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|389849343|ref|YP_006351579.1| - 0.31 10.6 1.7 0.34 10.5 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CARDB PF07705.11 gi|389849344|ref|YP_006351580.1| - 2.2e-07 31.1 9.8 0.00062 20.0 0.1 3.5 3 1 0 3 3 3 2 CARDB Transglut_C PF00927.22 gi|389849344|ref|YP_006351580.1| - 1.8e-05 24.8 0.0 0.013 15.7 0.0 2.5 1 1 1 2 2 2 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|389849344|ref|YP_006351580.1| - 0.00037 20.7 1.2 1.5 9.1 0.2 3.2 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|389849344|ref|YP_006351580.1| - 0.0085 16.4 4.2 0.75 10.1 3.5 3.7 1 1 1 2 2 2 1 Domain of unknown function DUF11 CBM_6 PF03422.15 gi|389849344|ref|YP_006351580.1| - 0.021 15.1 2.7 0.47 10.8 0.5 3.1 1 1 1 2 2 2 0 Carbohydrate binding module (family 6) SKG6 PF08693.10 gi|389849344|ref|YP_006351580.1| - 2.1 7.8 5.6 5.1 6.6 5.6 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain AAA_31 PF13614.6 gi|389849346|ref|YP_006351582.1| - 8.3e-22 77.9 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849346|ref|YP_006351582.1| - 3e-14 53.2 0.0 4.4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|389849346|ref|YP_006351582.1| - 1.1e-08 34.8 0.1 0.0029 16.9 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|389849346|ref|YP_006351582.1| - 4e-05 23.2 0.1 0.00042 19.9 0.1 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|389849346|ref|YP_006351582.1| - 0.0062 16.0 0.1 0.018 14.5 0.0 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|389849346|ref|YP_006351582.1| - 0.018 14.3 0.3 0.035 13.3 0.1 1.5 2 0 0 2 2 2 0 Anion-transporting ATPase DDE_Tnp_IS240 PF13610.6 gi|389849347|ref|YP_006351583.1| - 7.1e-19 68.4 0.0 9.7e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389849347|ref|YP_006351583.1| - 1.1e-07 31.6 0.4 1.8e-07 30.9 0.4 1.4 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389849347|ref|YP_006351583.1| - 0.03 14.4 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DDE_Tnp_1 PF01609.21 gi|389849347|ref|YP_006351583.1| - 0.038 13.6 3.5 1.4 8.6 0.9 2.1 1 1 1 2 2 2 0 Transposase DDE domain NIR_SIR PF01077.22 gi|389849349|ref|YP_006351585.1| - 6.4e-46 155.7 0.0 5.1e-35 120.3 0.0 2.6 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|389849349|ref|YP_006351585.1| - 8.9e-29 99.2 0.1 4.4e-13 48.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain zf-HC2 PF13490.6 gi|389849349|ref|YP_006351585.1| - 0.019 15.2 0.3 5.3 7.4 0.0 3.0 2 0 0 2 2 2 0 Putative zinc-finger DGC PF08859.11 gi|389849349|ref|YP_006351585.1| - 0.031 14.4 0.1 1.9 8.6 0.0 2.7 3 0 0 3 3 3 0 DGC domain FrhB_FdhB_C PF04432.13 gi|389849350|ref|YP_006351586.1| - 3.4e-28 98.4 0.0 6.8e-28 97.5 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|389849350|ref|YP_006351586.1| - 2.2e-21 75.8 0.0 4.1e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|389849350|ref|YP_006351586.1| - 1.6e-09 37.7 5.2 1.6e-09 37.7 5.2 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389849350|ref|YP_006351586.1| - 9.5e-09 34.7 17.2 2.3e-06 27.2 3.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|389849350|ref|YP_006351586.1| - 3.3e-08 33.5 5.6 3.3e-08 33.5 5.6 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389849350|ref|YP_006351586.1| - 3.6e-07 30.2 6.6 3.6e-07 30.2 6.6 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389849350|ref|YP_006351586.1| - 1.6e-05 25.7 13.3 0.062 14.2 1.6 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|389849350|ref|YP_006351586.1| - 1.8e-05 25.2 1.1 0.00054 20.5 0.0 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|389849350|ref|YP_006351586.1| - 4.6e-05 23.3 3.4 4.6e-05 23.3 3.4 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389849350|ref|YP_006351586.1| - 0.00015 22.3 8.1 0.017 15.7 0.2 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389849350|ref|YP_006351586.1| - 0.00017 21.5 3.3 0.00017 21.5 3.3 3.8 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389849350|ref|YP_006351586.1| - 0.0013 18.9 2.3 0.0035 17.5 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389849350|ref|YP_006351586.1| - 0.0023 18.3 4.6 0.0023 18.3 4.6 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|389849350|ref|YP_006351586.1| - 0.034 14.7 13.2 0.38 11.3 3.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TonB_2 PF13103.6 gi|389849350|ref|YP_006351586.1| - 0.089 13.0 0.1 0.29 11.4 0.0 1.9 2 0 0 2 2 1 0 TonB C terminal Fer4_15 PF13459.6 gi|389849350|ref|YP_006351586.1| - 0.094 13.5 10.5 0.18 12.6 1.2 3.1 1 1 1 2 2 2 0 4Fe-4S single cluster domain NUDIX PF00293.28 gi|389849351|ref|YP_006351587.1| - 1.8e-18 66.8 0.2 2.4e-18 66.4 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain DUF1317 PF07026.11 gi|389849351|ref|YP_006351587.1| - 0.081 12.7 1.3 0.1 12.5 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1317) DoxX PF07681.12 gi|389849352|ref|YP_006351588.1| - 3.6e-12 46.7 11.2 3.6e-12 46.7 11.2 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|389849352|ref|YP_006351588.1| - 9.6e-05 22.6 0.5 0.00074 19.7 0.1 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.15 gi|389849352|ref|YP_006351588.1| - 0.0007 19.3 0.2 0.0013 18.4 0.2 1.5 1 1 0 1 1 1 1 SURF4 family DUF4064 PF13273.6 gi|389849352|ref|YP_006351588.1| - 0.0031 17.8 3.4 0.0031 17.8 3.4 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) DoxX_2 PF13564.6 gi|389849352|ref|YP_006351588.1| - 0.02 15.0 9.8 0.029 14.5 9.5 1.5 1 1 0 1 1 1 0 DoxX-like family Abhydrolase_2 PF02230.16 gi|389849354|ref|YP_006351590.1| - 9.8e-21 74.5 0.0 5.3e-20 72.2 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|389849354|ref|YP_006351590.1| - 5.6e-09 35.6 0.1 3e-05 23.4 0.1 3.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389849354|ref|YP_006351590.1| - 2.2e-05 25.2 2.7 8.5e-05 23.3 2.7 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|389849354|ref|YP_006351590.1| - 0.00015 21.4 0.0 0.00027 20.5 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|389849354|ref|YP_006351590.1| - 0.00041 20.1 0.0 0.0028 17.3 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|389849354|ref|YP_006351590.1| - 0.046 13.6 0.0 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|389849354|ref|YP_006351590.1| - 0.053 13.0 0.0 2.1 7.8 0.0 2.5 2 1 1 3 3 3 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|389849354|ref|YP_006351590.1| - 0.2 11.3 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Glyoxalase PF00903.25 gi|389849355|ref|YP_006351591.1| - 9.7e-31 106.6 0.8 6.1e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849355|ref|YP_006351591.1| - 0.0099 16.1 0.0 4.5 7.6 0.0 3.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HicA_toxin PF07927.12 gi|389849355|ref|YP_006351591.1| - 0.016 15.2 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Glyoxalase PF00903.25 gi|389849356|ref|YP_006351592.1| - 4.9e-11 42.9 0.4 6.7e-11 42.5 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849356|ref|YP_006351592.1| - 2.8e-05 24.3 0.0 5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HxlR PF01638.17 gi|389849357|ref|YP_006351593.1| - 1.8e-20 72.6 0.0 2.2e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|389849357|ref|YP_006351593.1| - 3.8e-06 27.0 0.0 5.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|389849357|ref|YP_006351593.1| - 9.9e-05 22.2 0.1 0.00014 21.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389849357|ref|YP_006351593.1| - 0.00075 19.3 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389849357|ref|YP_006351593.1| - 0.0017 18.8 0.1 0.0026 18.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|389849357|ref|YP_006351593.1| - 0.0076 16.3 0.0 0.0093 16.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation MarR PF01047.22 gi|389849357|ref|YP_006351593.1| - 0.0078 16.1 0.1 0.014 15.3 0.1 1.5 1 1 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849357|ref|YP_006351593.1| - 0.011 15.7 0.1 0.017 15.1 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FemAB PF02388.16 gi|389849357|ref|YP_006351593.1| - 0.016 14.1 0.0 0.13 11.1 0.0 1.9 1 1 1 2 2 2 0 FemAB family TrmB PF01978.19 gi|389849357|ref|YP_006351593.1| - 0.041 13.8 0.1 0.06 13.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|389849357|ref|YP_006351593.1| - 0.05 13.4 0.1 0.077 12.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_43 PF09904.9 gi|389849357|ref|YP_006351593.1| - 0.054 13.4 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|389849357|ref|YP_006351593.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849357|ref|YP_006351593.1| - 0.094 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Isochorismatase PF00857.20 gi|389849358|ref|YP_006351594.1| - 1.9e-23 83.5 0.0 3.6e-23 82.6 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family Isochorismatase PF00857.20 gi|389849359|ref|YP_006351595.1| - 4.4e-29 101.9 0.3 1.1e-28 100.6 0.3 1.7 1 1 0 1 1 1 1 Isochorismatase family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017944.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017944.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017944.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017944.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:26:56 2019 # [ok]