# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|389848588|ref|YP_006350825.1| - 1.3e-17 63.2 0.2 2.6e-17 62.3 0.2 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|389848588|ref|YP_006350825.1| - 6.4e-15 55.4 0.4 5.8e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389848588|ref|YP_006350825.1| - 8.9e-10 38.8 1.3 1.5e-08 34.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|389848588|ref|YP_006350825.1| - 5.5e-07 29.8 0.6 2.3e-06 27.8 0.1 2.4 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|389848588|ref|YP_006350825.1| - 0.00017 21.4 1.4 0.00053 19.8 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|389848588|ref|YP_006350825.1| - 0.0002 20.2 0.0 0.00033 19.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.1 gi|389848588|ref|YP_006350825.1| - 0.00025 21.3 0.0 0.00088 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|389848588|ref|YP_006350825.1| - 0.00046 19.9 0.6 0.0051 16.5 0.4 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|389848588|ref|YP_006350825.1| - 0.00067 19.1 0.0 0.0015 18.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|389848588|ref|YP_006350825.1| - 0.0009 18.5 1.0 0.51 9.5 0.0 2.5 3 0 0 3 3 3 2 PhoH-like protein AAA_17 PF13207.1 gi|389848588|ref|YP_006350825.1| - 0.001 19.8 0.8 0.01 16.6 0.5 2.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|389848588|ref|YP_006350825.1| - 0.0021 17.7 0.1 0.0055 16.3 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_2 PF07724.9 gi|389848588|ref|YP_006350825.1| - 0.0031 17.4 0.0 0.0086 16.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|389848588|ref|YP_006350825.1| - 0.0031 16.9 0.2 0.02 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain Mg_chelatase PF01078.16 gi|389848588|ref|YP_006350825.1| - 0.0076 15.4 0.0 0.012 14.7 0.0 1.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|389848588|ref|YP_006350825.1| - 0.0093 15.4 0.1 0.054 12.9 0.0 2.0 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_32 PF13654.1 gi|389848588|ref|YP_006350825.1| - 0.0097 14.6 0.7 1.7 7.1 0.4 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|389848588|ref|YP_006350825.1| - 0.01 15.8 0.3 0.039 13.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.24 gi|389848588|ref|YP_006350825.1| - 0.013 15.0 4.0 1.4 8.3 0.2 2.6 2 1 0 3 3 3 0 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|389848588|ref|YP_006350825.1| - 0.019 15.2 0.5 0.055 13.7 0.3 2.1 1 1 0 1 1 1 0 ABC transporter T2SE PF00437.15 gi|389848588|ref|YP_006350825.1| - 0.023 13.6 0.0 0.044 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|389848588|ref|YP_006350825.1| - 0.034 13.2 0.0 0.09 11.8 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|389848588|ref|YP_006350825.1| - 0.039 13.4 0.0 0.091 12.2 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|389848588|ref|YP_006350825.1| - 0.054 13.1 0.2 0.13 11.9 0.0 1.8 2 1 0 2 2 2 0 Archaeal ATPase P-II PF00543.17 gi|389848588|ref|YP_006350825.1| - 0.076 13.4 1.2 1.6 9.2 0.0 2.8 3 0 0 3 3 2 0 Nitrogen regulatory protein P-II RNA_helicase PF00910.17 gi|389848588|ref|YP_006350825.1| - 0.12 12.6 0.3 1.2 9.3 0.0 2.7 2 1 0 2 2 2 0 RNA helicase NESP55 PF06390.7 gi|389848589|ref|YP_006350826.1| - 0.15 11.4 3.4 0.17 11.2 2.3 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) CbiA PF01656.18 gi|389848590|ref|YP_006350827.1| - 1.7e-25 89.5 0.0 2e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389848590|ref|YP_006350827.1| - 1e-09 38.5 0.0 9.8e-09 35.3 0.0 2.3 1 1 1 2 2 2 1 AAA domain MipZ PF09140.6 gi|389848590|ref|YP_006350827.1| - 7.6e-08 31.7 0.1 0.0005 19.2 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|389848590|ref|YP_006350827.1| - 4e-07 29.4 0.0 3.8e-06 26.2 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|389848590|ref|YP_006350827.1| - 7.3e-07 28.7 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|389848590|ref|YP_006350827.1| - 8.7e-06 24.9 0.0 5.7e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|389848590|ref|YP_006350827.1| - 0.0024 17.0 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 VirC1 protein ArgK PF03308.11 gi|389848590|ref|YP_006350827.1| - 0.018 13.8 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein DUF1611 PF07755.6 gi|389848590|ref|YP_006350827.1| - 0.046 12.3 0.0 0.89 8.1 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1611) AAA_19 PF13245.1 gi|389848590|ref|YP_006350827.1| - 0.071 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Spermine_synth PF01564.12 gi|389848592|ref|YP_006350829.1| - 1e-17 63.9 0.0 1.5e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase DUF2617 PF10936.3 gi|389848593|ref|YP_006350830.1| - 5.3e-05 22.8 0.7 0.00014 21.4 0.5 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF2617 DUF3060 PF11259.3 gi|389848594|ref|YP_006350831.1| - 0.1 12.2 0.9 0.5 10.0 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3060) DUF953 PF06110.6 gi|389848594|ref|YP_006350831.1| - 0.12 11.7 0.1 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) zf-ribbon_3 PF13248.1 gi|389848594|ref|YP_006350831.1| - 0.79 9.0 2.9 0.63 9.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Pentapeptide_3 PF13576.1 gi|389848596|ref|YP_006350833.1| - 2.3e-48 161.8 87.9 1.2e-09 37.8 3.8 10.8 3 2 9 12 12 12 10 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|389848596|ref|YP_006350833.1| - 5.8e-10 38.7 5.8 1.4e-09 37.5 1.0 2.4 1 1 1 2 2 2 1 Ion channel Pentapeptide_4 PF13599.1 gi|389848596|ref|YP_006350833.1| - 2.2e-07 30.5 40.2 0.067 13.0 5.7 7.4 4 2 2 6 6 6 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|389848596|ref|YP_006350833.1| - 1.2 8.4 17.6 18 4.7 0.0 8.4 11 3 0 11 11 11 0 Pentapeptide repeats (8 copies) HTH_10 PF04967.7 gi|389848597|ref|YP_006350834.1| - 4.7e-23 80.5 0.0 7.6e-23 79.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|389848597|ref|YP_006350834.1| - 0.0016 17.7 0.7 0.0062 15.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389848597|ref|YP_006350834.1| - 0.016 14.8 0.1 0.04 13.5 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|389848597|ref|YP_006350834.1| - 0.024 14.2 0.1 0.061 12.9 0.0 1.7 2 0 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.7 gi|389848597|ref|YP_006350834.1| - 0.027 13.9 0.4 0.37 10.3 0.3 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|389848597|ref|YP_006350834.1| - 0.035 13.9 0.4 0.091 12.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.18 gi|389848597|ref|YP_006350834.1| - 0.06 12.9 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.11 gi|389848597|ref|YP_006350834.1| - 0.075 12.3 0.2 0.29 10.4 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Asp_Glu_race PF01177.17 gi|389848598|ref|YP_006350835.1| - 6.8e-36 124.2 0.1 8e-36 123.9 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase DUF3608 PF12257.3 gi|389848598|ref|YP_006350835.1| - 0.15 10.9 0.0 1.2 7.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3608) ABC2_membrane_4 PF12730.2 gi|389848600|ref|YP_006350837.1| - 3.2e-07 29.7 14.7 3.2e-07 29.7 10.2 3.3 2 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389848600|ref|YP_006350837.1| - 1.3e-06 27.5 7.0 1.3e-06 27.5 4.9 3.2 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389848600|ref|YP_006350837.1| - 8.8e-05 21.6 16.5 8.8e-05 21.6 11.4 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389848600|ref|YP_006350837.1| - 0.00017 20.9 5.5 0.00017 20.9 3.8 3.0 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389848601|ref|YP_006350838.1| - 5e-28 98.1 0.0 8.8e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848601|ref|YP_006350838.1| - 1e-12 48.6 0.0 1.6e-07 31.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|389848601|ref|YP_006350838.1| - 1.2e-05 25.7 0.0 2e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389848601|ref|YP_006350838.1| - 7.1e-05 22.2 0.1 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389848601|ref|YP_006350838.1| - 0.00016 20.9 0.0 0.007 15.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|389848601|ref|YP_006350838.1| - 0.0015 18.4 0.0 0.0095 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|389848601|ref|YP_006350838.1| - 0.0041 16.2 0.0 1.2 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|389848601|ref|YP_006350838.1| - 0.007 15.5 0.1 0.028 13.6 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|389848601|ref|YP_006350838.1| - 0.028 13.1 0.0 0.04 12.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain MMR_HSR1 PF01926.18 gi|389848601|ref|YP_006350838.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|389848601|ref|YP_006350838.1| - 0.16 11.3 0.5 0.62 9.4 0.1 1.9 1 1 1 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|389848602|ref|YP_006350839.1| - 5.5e-32 110.9 0.0 8.7e-32 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389848602|ref|YP_006350839.1| - 2.3e-14 53.1 0.3 4.3e-13 49.0 0.0 2.6 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.12 gi|389848602|ref|YP_006350839.1| - 5.8e-10 39.1 0.2 6.5e-07 29.3 0.1 3.5 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|389848602|ref|YP_006350839.1| - 1.7e-07 31.5 0.0 0.01 15.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|389848602|ref|YP_006350839.1| - 0.0018 17.4 0.0 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|389848602|ref|YP_006350839.1| - 0.0019 18.0 0.0 0.0074 16.1 0.0 2.0 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|389848602|ref|YP_006350839.1| - 0.002 18.2 0.3 0.0059 16.7 0.2 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|389848602|ref|YP_006350839.1| - 0.0029 16.3 0.0 0.0051 15.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|389848602|ref|YP_006350839.1| - 0.0058 16.6 0.3 0.014 15.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|389848602|ref|YP_006350839.1| - 0.014 14.6 0.1 0.11 11.7 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|389848602|ref|YP_006350839.1| - 0.036 14.8 0.0 0.097 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389848602|ref|YP_006350839.1| - 0.045 13.2 0.0 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389848602|ref|YP_006350839.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|389848602|ref|YP_006350839.1| - 0.059 12.8 0.1 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|389848602|ref|YP_006350839.1| - 0.061 12.4 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|389848602|ref|YP_006350839.1| - 0.065 13.1 0.1 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|389848602|ref|YP_006350839.1| - 0.11 12.9 0.0 3.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein MobB PF03205.9 gi|389848602|ref|YP_006350839.1| - 0.12 12.0 0.0 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|389848602|ref|YP_006350839.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|389848602|ref|YP_006350839.1| - 0.18 12.0 0.0 0.3 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|389848603|ref|YP_006350840.1| - 7.4e-17 61.4 16.4 7.4e-17 61.4 11.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|389848603|ref|YP_006350840.1| - 0.096 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 IS66 C-terminal element BPD_transp_1 PF00528.17 gi|389848604|ref|YP_006350841.1| - 1.5e-11 44.1 17.8 1.5e-11 44.1 12.3 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|389848605|ref|YP_006350842.1| - 1.3e-51 175.9 10.5 1.3e-51 175.9 7.3 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389848605|ref|YP_006350842.1| - 1.8e-30 106.7 10.3 2.6e-30 106.2 7.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|389848605|ref|YP_006350842.1| - 0.0033 17.1 0.4 2.6 7.5 0.0 2.6 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|389848605|ref|YP_006350842.1| - 0.005 16.2 0.1 1.2 8.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389848605|ref|YP_006350842.1| - 0.0087 15.9 0.8 0.031 14.2 0.5 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence G8 PF10162.4 gi|389848608|ref|YP_006350845.1| - 7.5e-24 83.9 0.1 1.5e-23 82.9 0.1 1.5 1 0 0 1 1 1 1 G8 domain TAT_signal PF10518.4 gi|389848608|ref|YP_006350845.1| - 0.0082 16.0 1.9 0.0082 16.0 1.3 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence 1-cysPrx_C PF10417.4 gi|389848608|ref|YP_006350845.1| - 0.14 11.7 0.2 0.36 10.5 0.1 1.6 1 0 0 1 1 1 0 C-terminal domain of 1-Cys peroxiredoxin EI24 PF07264.6 gi|389848610|ref|YP_006350847.1| - 0.26 10.6 8.3 0.28 10.5 5.7 1.0 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF898 PF05987.8 gi|389848610|ref|YP_006350847.1| - 1.3 7.8 6.7 1.3 7.8 4.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) TrbL PF04610.9 gi|389848610|ref|YP_006350847.1| - 1.7 8.2 7.3 1.9 8.1 5.0 1.0 1 0 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein ABC_tran PF00005.22 gi|389848612|ref|YP_006350849.1| - 1.5e-35 122.4 0.0 2.4e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389848612|ref|YP_006350849.1| - 1.1e-12 47.7 0.2 4.6e-12 45.7 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|389848612|ref|YP_006350849.1| - 9.7e-10 38.8 0.0 0.00033 20.7 0.0 2.6 2 1 1 3 3 3 2 AAA domain TOBE PF03459.12 gi|389848612|ref|YP_006350849.1| - 3e-06 27.2 0.1 5.7e-05 23.1 0.0 2.8 3 0 0 3 3 3 1 TOBE domain AAA_15 PF13175.1 gi|389848612|ref|YP_006350849.1| - 7.2e-05 22.0 0.0 0.0011 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|389848612|ref|YP_006350849.1| - 0.00017 20.8 0.0 0.0004 19.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|389848612|ref|YP_006350849.1| - 0.0013 17.9 0.0 0.0025 17.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|389848612|ref|YP_006350849.1| - 0.0013 18.8 0.8 0.0059 16.7 0.5 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|389848612|ref|YP_006350849.1| - 0.0029 16.3 0.0 0.0037 16.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|389848612|ref|YP_006350849.1| - 0.0055 16.9 0.0 0.034 14.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|389848612|ref|YP_006350849.1| - 0.0065 16.4 0.1 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain TAF PF02969.12 gi|389848612|ref|YP_006350849.1| - 0.014 15.3 0.0 0.053 13.4 0.0 2.0 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) AAA_25 PF13481.1 gi|389848612|ref|YP_006350849.1| - 0.014 14.7 0.0 0.2 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|389848612|ref|YP_006350849.1| - 0.015 15.1 0.2 0.025 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389848612|ref|YP_006350849.1| - 0.016 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|389848612|ref|YP_006350849.1| - 0.022 15.5 0.1 0.044 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|389848612|ref|YP_006350849.1| - 0.023 14.1 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|389848612|ref|YP_006350849.1| - 0.041 14.1 0.1 0.11 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|389848612|ref|YP_006350849.1| - 0.046 14.0 0.4 0.12 12.6 0.1 2.0 2 1 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|389848612|ref|YP_006350849.1| - 0.083 13.0 0.0 0.56 10.3 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.1 gi|389848612|ref|YP_006350849.1| - 0.094 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|389848612|ref|YP_006350849.1| - 0.12 11.5 0.0 0.24 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|389848612|ref|YP_006350849.1| - 0.12 12.3 0.0 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain SelA PF03841.8 gi|389848613|ref|YP_006350850.1| - 6.5e-09 35.0 0.2 1.3e-06 27.4 0.0 3.1 3 0 0 3 3 3 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|389848613|ref|YP_006350850.1| - 3.1e-07 29.4 0.0 5.5e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|389848613|ref|YP_006350850.1| - 2.7e-05 22.6 1.2 0.00029 19.2 0.9 2.0 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|389848613|ref|YP_006350850.1| - 0.00015 21.0 0.8 0.00097 18.3 0.4 2.4 1 1 1 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|389848613|ref|YP_006350850.1| - 0.00023 20.3 1.2 0.00036 19.7 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|389848613|ref|YP_006350850.1| - 0.012 14.1 0.0 0.031 12.7 0.0 1.7 2 0 0 2 2 2 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) PorB PF11565.3 gi|389848613|ref|YP_006350850.1| - 0.033 14.4 0.8 2.6 8.3 0.2 2.6 2 0 0 2 2 2 0 Alpha helical Porin B NAD_binding_3 PF03447.11 gi|389848613|ref|YP_006350850.1| - 0.056 13.8 0.2 0.21 11.9 0.0 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain tRNA_edit PF04073.10 gi|389848613|ref|YP_006350850.1| - 0.15 11.9 0.9 0.63 9.8 0.0 2.2 2 0 0 2 2 2 0 Aminoacyl-tRNA editing domain PIG-L PF02585.12 gi|389848614|ref|YP_006350851.1| - 1.8e-32 112.4 1.7 2.9e-32 111.8 1.2 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Tautomerase_3 PF14832.1 gi|389848614|ref|YP_006350851.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme Ribonuc_L-PSP PF01042.16 gi|389848615|ref|YP_006350852.1| - 1.8e-42 143.9 0.2 2e-42 143.7 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Glyco_hydro_3 PF00933.16 gi|389848616|ref|YP_006350853.1| - 1.8e-77 260.2 0.0 2.2e-77 259.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|389848616|ref|YP_006350853.1| - 0.00041 19.9 0.6 0.0012 18.4 0.1 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain CM_2 PF01817.16 gi|389848616|ref|YP_006350853.1| - 0.043 13.9 0.4 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 Chorismate mutase type II BPD_transp_1 PF00528.17 gi|389848617|ref|YP_006350854.1| - 9.5e-19 67.6 17.5 9.5e-19 67.6 12.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389848618|ref|YP_006350855.1| - 1.4e-22 80.0 19.0 1.4e-22 80.0 13.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|389848619|ref|YP_006350856.1| - 1.2e-27 97.3 9.6 1.7e-27 96.8 6.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389848619|ref|YP_006350856.1| - 4.7e-21 75.8 11.9 7.3e-21 75.1 8.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389848619|ref|YP_006350856.1| - 0.00032 20.4 2.2 0.00063 19.5 1.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|389848619|ref|YP_006350856.1| - 0.00033 20.3 0.2 0.001 18.7 0.1 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4223 PF13978.1 gi|389848619|ref|YP_006350856.1| - 0.16 11.6 0.1 0.52 10.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4223) MR_MLE_C PF13378.1 gi|389848620|ref|YP_006350857.1| - 8.1e-28 96.6 0.0 1.3e-27 95.9 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|389848620|ref|YP_006350857.1| - 1.7e-25 89.2 0.0 6.8e-25 87.3 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|389848620|ref|YP_006350857.1| - 6.3e-10 39.4 0.0 1.5e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PEP_mutase PF13714.1 gi|389848620|ref|YP_006350857.1| - 0.0073 15.5 0.2 0.012 14.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase IclR PF01614.13 gi|389848621|ref|YP_006350858.1| - 3e-21 75.4 0.1 2.7e-20 72.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|389848621|ref|YP_006350858.1| - 7.7e-12 44.6 0.1 3.1e-11 42.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|389848621|ref|YP_006350858.1| - 4.4e-09 35.8 0.0 1e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|389848621|ref|YP_006350858.1| - 3.8e-07 29.6 0.0 8.9e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|389848621|ref|YP_006350858.1| - 3.6e-06 26.5 0.0 8.4e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|389848621|ref|YP_006350858.1| - 4.1e-06 26.5 0.1 9.6e-06 25.3 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389848621|ref|YP_006350858.1| - 1.2e-05 24.9 0.0 2.9e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389848621|ref|YP_006350858.1| - 0.00042 19.6 0.0 0.00091 18.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|389848621|ref|YP_006350858.1| - 0.0017 18.4 0.0 0.005 16.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|389848621|ref|YP_006350858.1| - 0.0025 17.4 0.0 0.0058 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|389848621|ref|YP_006350858.1| - 0.0036 17.2 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|389848621|ref|YP_006350858.1| - 0.0063 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_10 PF04967.7 gi|389848621|ref|YP_006350858.1| - 0.024 14.1 0.0 0.072 12.6 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain RHH_1 PF01402.16 gi|389848621|ref|YP_006350858.1| - 0.03 14.2 0.0 2.1 8.3 0.0 3.3 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family LexA_DNA_bind PF01726.11 gi|389848621|ref|YP_006350858.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.1 gi|389848621|ref|YP_006350858.1| - 0.06 13.3 0.0 0.36 10.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain IF2_N PF04760.10 gi|389848621|ref|YP_006350858.1| - 0.1 12.2 0.0 1 9.1 0.0 2.5 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region ADH_N PF08240.7 gi|389848622|ref|YP_006350859.1| - 2.6e-11 43.2 0.0 4e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|389848622|ref|YP_006350859.1| - 5.4e-05 22.7 0.0 9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PKD PF00801.15 gi|389848623|ref|YP_006350860.1| - 8.3e-13 47.8 8.0 8.3e-13 47.8 5.5 2.2 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.9 gi|389848623|ref|YP_006350860.1| - 3.3e-10 39.3 1.1 1e-09 37.7 0.8 1.9 1 0 0 1 1 1 1 Carbohydrate binding domain PKD PF00801.15 gi|389848624|ref|YP_006350861.1| - 8.1e-15 54.3 5.7 2e-14 53.0 4.0 1.7 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|389848624|ref|YP_006350861.1| - 4.9e-14 51.6 6.2 1.8e-13 49.8 4.3 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain Big_3_4 PF13754.1 gi|389848624|ref|YP_006350861.1| - 0.00017 21.8 11.0 0.00017 21.8 7.6 2.4 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|389848624|ref|YP_006350861.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Big_3_2 PF12245.3 gi|389848624|ref|YP_006350861.1| - 0.2 11.2 1.8 0.65 9.6 0.3 2.4 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Glyco_hydro_18 PF00704.23 gi|389848625|ref|YP_006350862.1| - 7.2e-79 265.7 3.0 1.1e-78 265.0 2.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|389848625|ref|YP_006350862.1| - 1.2e-21 76.2 6.5 4.5e-21 74.3 4.5 2.1 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|389848625|ref|YP_006350862.1| - 4.6e-14 51.7 7.5 4.6e-14 51.7 5.2 2.5 2 0 0 2 2 2 1 Carbohydrate binding domain Glyco_hydro_18 PF00704.23 gi|389848626|ref|YP_006350863.1| - 9.7e-95 317.8 12.9 1.3e-94 317.4 9.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|389848626|ref|YP_006350863.1| - 1.2e-18 66.6 4.8 1.2e-18 66.6 3.3 2.1 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.9 gi|389848626|ref|YP_006350863.1| - 2.4e-14 52.6 9.6 2.4e-14 52.6 6.7 2.4 2 0 0 2 2 2 1 Carbohydrate binding domain IucA_IucC PF04183.7 gi|389848627|ref|YP_006350864.1| - 8.5e-71 238.1 0.0 1.3e-70 237.4 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|389848627|ref|YP_006350864.1| - 5.1e-35 120.8 0.2 9.8e-35 119.9 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.1 gi|389848628|ref|YP_006350865.1| - 4.4e-111 371.0 0.0 5.4e-111 370.7 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|389848628|ref|YP_006350865.1| - 7.8e-13 48.9 0.0 2.2e-12 47.4 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|389848628|ref|YP_006350865.1| - 0.00025 20.8 0.0 0.002 17.9 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|389848628|ref|YP_006350865.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_8 PF13523.1 gi|389848629|ref|YP_006350866.1| - 1.1e-35 122.7 0.0 1.3e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389848629|ref|YP_006350866.1| - 4.2e-07 30.2 0.0 7.2e-07 29.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389848629|ref|YP_006350866.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848629|ref|YP_006350866.1| - 0.093 12.8 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain IucA_IucC PF04183.7 gi|389848630|ref|YP_006350867.1| - 3.8e-64 216.3 0.0 5.1e-64 215.9 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|389848630|ref|YP_006350867.1| - 2.9e-31 108.6 0.2 5.4e-31 107.7 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyridoxal_deC PF00282.14 gi|389848631|ref|YP_006350868.1| - 1.5e-65 221.0 0.0 2.9e-65 220.1 0.0 1.4 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|389848631|ref|YP_006350868.1| - 8.9e-08 31.6 0.0 1.8e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|389848631|ref|YP_006350868.1| - 1.7e-05 23.7 0.0 7.4e-05 21.6 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|389848632|ref|YP_006350869.1| - 7.2e-88 294.6 0.0 8.5e-88 294.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III p450 PF00067.17 gi|389848633|ref|YP_006350870.1| - 6.9e-84 281.9 0.0 7.8e-84 281.8 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 F_actin_bind PF08919.5 gi|389848633|ref|YP_006350870.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 F-actin binding HTH_45 PF14947.1 gi|389848634|ref|YP_006350871.1| - 2.2e-05 24.1 0.0 4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|389848634|ref|YP_006350871.1| - 0.012 15.2 0.0 0.033 13.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|389848634|ref|YP_006350871.1| - 0.027 14.2 0.0 0.061 13.1 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|389848634|ref|YP_006350871.1| - 0.061 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family UbiA PF01040.13 gi|389848635|ref|YP_006350872.1| - 9.4e-18 64.3 9.3 1.2e-17 63.9 6.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Tuberculin PF12198.3 gi|389848636|ref|YP_006350873.1| - 0.0013 18.5 0.1 0.0027 17.5 0.1 1.5 1 0 0 1 1 1 1 Theoretical tuberculin protein PASTA PF03793.14 gi|389848636|ref|YP_006350873.1| - 0.019 14.5 0.9 0.037 13.6 0.7 1.5 1 0 0 1 1 1 0 PASTA domain Phage_tail_3 PF08813.6 gi|389848636|ref|YP_006350873.1| - 0.089 12.1 0.1 0.22 10.9 0.0 1.6 1 1 0 1 1 1 0 Phage tail protein GATase_3 PF07685.9 gi|389848638|ref|YP_006350875.1| - 7.5e-29 100.3 0.0 1.1e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|389848638|ref|YP_006350875.1| - 9.2e-23 80.6 0.0 1.8e-22 79.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|389848638|ref|YP_006350875.1| - 1.6e-10 40.9 0.0 0.00024 20.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|389848638|ref|YP_006350875.1| - 0.048 13.2 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PEP-utilizers PF00391.18 gi|389848638|ref|YP_006350875.1| - 0.063 12.8 0.2 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain TP_methylase PF00590.15 gi|389848639|ref|YP_006350876.1| - 6.6e-34 117.4 0.1 7.9e-34 117.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|389848640|ref|YP_006350877.1| - 3.1e-50 170.3 1.6 3.7e-50 170.1 1.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase MGS PF02142.17 gi|389848640|ref|YP_006350877.1| - 0.014 15.2 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 MGS-like domain CobN-Mg_chel PF02514.11 gi|389848641|ref|YP_006350878.1| - 0 1234.1 0.0 0 1233.8 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|389848641|ref|YP_006350878.1| - 0.0023 17.4 0.0 0.0063 16.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain VWA_2 PF13519.1 gi|389848642|ref|YP_006350879.1| - 9.2e-16 58.4 2.6 9.2e-16 58.4 1.8 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|389848642|ref|YP_006350879.1| - 1.8e-11 43.6 0.0 3.3e-08 32.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|389848642|ref|YP_006350879.1| - 9.7e-11 41.5 0.1 0.00024 20.8 0.0 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) VWA PF00092.23 gi|389848642|ref|YP_006350879.1| - 1.8e-09 37.5 0.1 3.4e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_16 PF13191.1 gi|389848642|ref|YP_006350879.1| - 5.8e-05 23.1 0.7 0.0016 18.4 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain VWA_3 PF13768.1 gi|389848642|ref|YP_006350879.1| - 0.00039 20.1 0.4 0.00074 19.2 0.3 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.18 gi|389848642|ref|YP_006350879.1| - 0.00062 18.6 0.6 0.015 14.1 0.0 2.5 3 0 0 3 3 3 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|389848642|ref|YP_006350879.1| - 0.0054 16.2 0.0 0.31 10.5 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|389848642|ref|YP_006350879.1| - 0.055 13.6 0.3 1.5 8.9 0.1 2.9 2 1 0 2 2 2 0 AAA domain PQQ_2 PF13360.1 gi|389848643|ref|YP_006350880.1| - 6.5e-19 68.3 4.7 9e-11 41.6 0.6 2.4 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|389848643|ref|YP_006350880.1| - 4.5e-15 55.3 15.2 0.01 16.0 0.0 7.8 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|389848643|ref|YP_006350880.1| - 2.3e-12 45.7 3.8 8.1e-05 21.9 0.0 6.9 7 0 0 7 7 7 2 PQQ enzyme repeat Ricin_B_lectin PF00652.17 gi|389848643|ref|YP_006350880.1| - 0.0046 16.9 0.0 0.076 13.0 0.0 2.6 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain MHC_II_alpha PF00993.15 gi|389848643|ref|YP_006350880.1| - 0.026 14.1 0.1 0.079 12.5 0.0 1.8 2 0 0 2 2 2 0 Class II histocompatibility antigen, alpha domain D-ser_dehydrat PF14031.1 gi|389848643|ref|YP_006350880.1| - 0.085 13.0 0.1 0.51 10.5 0.0 2.2 2 0 0 2 2 2 0 Putative serine dehydratase domain NHL PF01436.16 gi|389848643|ref|YP_006350880.1| - 3 7.9 7.2 26 5.0 0.5 4.4 4 0 0 4 4 4 0 NHL repeat DUF3209 PF11483.3 gi|389848644|ref|YP_006350881.1| - 2e-47 160.5 3.8 2.2e-47 160.3 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) NIT PF08376.5 gi|389848644|ref|YP_006350881.1| - 0.048 13.1 0.4 0.064 12.7 0.2 1.2 1 0 0 1 1 1 0 Nitrate and nitrite sensing CbiX PF01903.12 gi|389848645|ref|YP_006350882.1| - 1.2e-47 160.2 0.0 4.2e-24 84.6 0.0 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|389848645|ref|YP_006350882.1| - 2.4e-10 40.1 0.2 4.3e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|389848645|ref|YP_006350882.1| - 6.5e-08 31.9 0.0 5.2e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|389848645|ref|YP_006350882.1| - 1.2e-05 25.4 0.1 2.9e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Sucrase/ferredoxin-like Ferrochelatase PF00762.14 gi|389848645|ref|YP_006350882.1| - 5.4e-05 22.3 0.0 0.00018 20.5 0.0 2.0 2 1 0 2 2 2 1 Ferrochelatase Hom_end PF05204.9 gi|389848646|ref|YP_006350883.1| - 0.0051 16.7 0.1 0.044 13.7 0.0 2.0 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_3 PF14528.1 gi|389848646|ref|YP_006350883.1| - 0.011 15.9 0.0 0.063 13.5 0.0 1.9 2 0 0 2 2 2 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|389848647|ref|YP_006350884.1| - 1.1e-09 38.7 6.9 3.3e-09 37.1 4.8 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|389848647|ref|YP_006350884.1| - 0.0011 18.7 0.2 0.066 13.0 0.2 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|389848647|ref|YP_006350884.1| - 0.085 13.2 2.0 0.16 12.3 1.4 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|389848647|ref|YP_006350884.1| - 2.1 8.3 4.8 4 7.4 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain TP_methylase PF00590.15 gi|389848648|ref|YP_006350885.1| - 9.7e-34 116.9 0.2 1.2e-33 116.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|389848649|ref|YP_006350886.1| - 2.2e-38 132.1 0.0 2.8e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|389848650|ref|YP_006350887.1| - 3.1e-31 106.9 0.0 8.2e-31 105.5 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|389848650|ref|YP_006350887.1| - 4.6e-28 97.9 0.0 1.1e-27 96.7 0.0 1.6 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|389848651|ref|YP_006350888.1| - 4.3e-40 137.6 0.3 5.1e-40 137.4 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.6 gi|389848651|ref|YP_006350888.1| - 0.01 16.4 0.0 0.025 15.2 0.0 1.6 1 0 0 1 1 1 0 Regulator of ribonuclease activity B TP_methylase PF00590.15 gi|389848652|ref|YP_006350889.1| - 1.8e-34 119.3 0.1 2.3e-34 118.9 0.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|389848653|ref|YP_006350890.1| - 2.2e-12 47.5 0.1 3.6e-12 46.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389848653|ref|YP_006350890.1| - 1.4e-07 31.0 0.0 4.3e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|389848653|ref|YP_006350890.1| - 7.7e-06 25.9 0.1 1.2e-05 25.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389848653|ref|YP_006350890.1| - 2.2e-05 24.1 0.0 2.3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|389848653|ref|YP_006350890.1| - 2.6e-05 23.8 0.0 3.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|389848653|ref|YP_006350890.1| - 7.1e-05 23.1 0.0 9.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389848653|ref|YP_006350890.1| - 0.00034 21.0 0.2 0.00067 20.0 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|389848653|ref|YP_006350890.1| - 0.00078 18.6 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|389848653|ref|YP_006350890.1| - 0.00087 18.7 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|389848653|ref|YP_006350890.1| - 0.0021 17.1 0.0 0.0029 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DOT1 PF08123.8 gi|389848653|ref|YP_006350890.1| - 0.0059 15.9 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.8 gi|389848653|ref|YP_006350890.1| - 0.0074 15.4 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|389848653|ref|YP_006350890.1| - 0.055 13.0 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|389848653|ref|YP_006350890.1| - 0.12 12.0 0.4 0.2 11.2 0.2 1.4 1 1 0 1 1 1 0 Met-10+ like-protein CbiM PF01891.11 gi|389848654|ref|YP_006350891.1| - 2.4e-49 167.7 24.1 3e-49 167.4 16.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|389848655|ref|YP_006350892.1| - 5.5e-12 45.5 0.1 7.2e-12 45.1 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|389848656|ref|YP_006350893.1| - 2.2e-32 112.4 10.0 3.2e-32 111.9 7.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|389848657|ref|YP_006350894.1| - 3.4e-32 111.6 0.0 4.2e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848657|ref|YP_006350894.1| - 1.9e-14 54.3 0.0 2.2e-07 31.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389848657|ref|YP_006350894.1| - 2e-08 33.7 0.0 4.8e-05 22.7 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389848657|ref|YP_006350894.1| - 3.9e-05 23.0 0.0 6.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389848657|ref|YP_006350894.1| - 0.00028 21.2 0.0 0.00035 20.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|389848657|ref|YP_006350894.1| - 0.00051 19.8 0.1 0.0066 16.3 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|389848657|ref|YP_006350894.1| - 0.00064 18.8 0.0 0.4 9.6 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|389848657|ref|YP_006350894.1| - 0.0016 18.4 0.0 0.0036 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|389848657|ref|YP_006350894.1| - 0.0076 15.7 0.0 0.21 10.9 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain DUF4350 PF14258.1 gi|389848657|ref|YP_006350894.1| - 0.0084 16.2 0.5 0.58 10.4 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) DUF258 PF03193.11 gi|389848657|ref|YP_006350894.1| - 0.013 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|389848657|ref|YP_006350894.1| - 0.014 14.5 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|389848657|ref|YP_006350894.1| - 0.015 14.9 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|389848657|ref|YP_006350894.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|389848657|ref|YP_006350894.1| - 0.022 14.8 0.0 0.05 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389848657|ref|YP_006350894.1| - 0.071 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|389848657|ref|YP_006350894.1| - 0.072 11.5 0.0 0.17 10.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|389848657|ref|YP_006350894.1| - 0.077 12.3 0.0 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|389848657|ref|YP_006350894.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|389848657|ref|YP_006350894.1| - 0.16 11.3 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0139 PF03669.8 gi|389848658|ref|YP_006350895.1| - 0.41 10.1 2.2 1.4 8.4 1.5 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0139) DUF4013 PF13197.1 gi|389848658|ref|YP_006350895.1| - 2.2 7.6 43.9 0.44 9.8 10.5 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) TrbC PF04956.8 gi|389848659|ref|YP_006350896.1| - 0.13 12.3 2.1 0.19 11.7 1.5 1.6 1 1 0 1 1 1 0 TrbC/VIRB2 family Peptidase_M50 PF02163.17 gi|389848659|ref|YP_006350896.1| - 0.24 10.3 1.5 0.25 10.3 0.5 1.5 1 1 0 1 1 1 0 Peptidase family M50 SARS_X4 PF08779.5 gi|389848660|ref|YP_006350897.1| - 0.044 13.9 0.0 0.05 13.7 0.0 1.1 1 0 0 1 1 1 0 SARS coronavirus X4 like AAA_26 PF13500.1 gi|389848661|ref|YP_006350898.1| - 5.6e-39 133.8 0.0 6.4e-39 133.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|389848661|ref|YP_006350898.1| - 9.1e-07 28.4 1.5 1.3e-05 24.7 1.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|389848661|ref|YP_006350898.1| - 0.0004 19.1 0.6 0.0085 14.7 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1611) Aminotran_1_2 PF00155.16 gi|389848662|ref|YP_006350899.1| - 1.1e-56 192.3 0.0 1.2e-56 192.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|389848662|ref|YP_006350899.1| - 0.00014 20.2 0.0 0.00019 19.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|389848662|ref|YP_006350899.1| - 0.0049 15.9 3.4 0.017 14.1 2.1 2.1 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.13 gi|389848662|ref|YP_006350899.1| - 0.0076 15.4 0.0 0.018 14.1 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein Aminotran_5 PF00266.14 gi|389848662|ref|YP_006350899.1| - 0.018 13.7 0.1 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V GFO_IDH_MocA PF01408.17 gi|389848663|ref|YP_006350900.1| - 0.0017 18.8 0.5 3.2 8.2 0.0 2.9 3 0 0 3 3 3 2 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|389848663|ref|YP_006350900.1| - 0.0039 16.7 0.3 0.015 14.8 0.1 2.0 1 1 1 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|389848663|ref|YP_006350900.1| - 0.055 12.4 0.2 0.3 9.9 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase BATS PF06968.8 gi|389848664|ref|YP_006350901.1| - 2.5e-24 84.9 0.0 1.2e-23 82.7 0.0 2.1 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|389848664|ref|YP_006350901.1| - 1.4e-14 54.6 0.2 9.8e-12 45.3 0.0 2.3 2 0 0 2 2 2 2 Radical SAM superfamily adh_short PF00106.20 gi|389848665|ref|YP_006350902.1| - 3.2e-36 124.7 1.7 3.8e-36 124.5 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389848665|ref|YP_006350902.1| - 2e-20 73.6 0.0 2.9e-20 73.0 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389848665|ref|YP_006350902.1| - 6.7e-16 58.4 0.5 8.6e-16 58.1 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389848665|ref|YP_006350902.1| - 8.4e-08 31.9 0.0 1.2e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|389848665|ref|YP_006350902.1| - 9.7e-07 27.9 0.3 1.3e-06 27.5 0.2 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|389848665|ref|YP_006350902.1| - 1e-06 28.8 1.9 1.8e-06 28.0 1.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|389848665|ref|YP_006350902.1| - 5e-05 22.4 0.3 7.3e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|389848665|ref|YP_006350902.1| - 0.00024 21.1 0.4 0.0045 17.0 0.1 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|389848665|ref|YP_006350902.1| - 0.0013 18.3 0.2 0.002 17.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389848665|ref|YP_006350902.1| - 0.0025 17.7 0.8 0.0049 16.8 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|389848665|ref|YP_006350902.1| - 0.0044 16.7 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DFP PF04127.10 gi|389848665|ref|YP_006350902.1| - 0.0055 16.3 0.6 0.0099 15.5 0.4 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Glyco_trans_4_4 PF13579.1 gi|389848665|ref|YP_006350902.1| - 0.0068 16.5 1.0 0.21 11.6 0.2 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Eno-Rase_NADH_b PF12242.3 gi|389848665|ref|YP_006350902.1| - 0.0069 16.1 0.3 0.017 14.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|389848665|ref|YP_006350902.1| - 0.016 13.9 0.2 0.022 13.4 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HEM4 PF02602.10 gi|389848665|ref|YP_006350902.1| - 0.018 14.2 0.4 0.063 12.5 0.3 2.0 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD THF_DHG_CYH_C PF02882.14 gi|389848665|ref|YP_006350902.1| - 0.023 13.7 0.2 0.16 11.0 0.0 2.1 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.12 gi|389848665|ref|YP_006350902.1| - 0.032 13.1 0.6 0.044 12.6 0.4 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain ApbA PF02558.11 gi|389848665|ref|YP_006350902.1| - 0.035 13.5 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HHH_5 PF14520.1 gi|389848665|ref|YP_006350902.1| - 0.059 13.5 0.2 0.12 12.5 0.2 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain NmrA PF05368.8 gi|389848665|ref|YP_006350902.1| - 0.089 12.0 0.1 0.37 9.9 0.1 1.8 2 0 0 2 2 2 0 NmrA-like family Glyco_transf_5 PF08323.6 gi|389848665|ref|YP_006350902.1| - 0.092 12.2 0.0 2.9 7.3 0.0 2.3 2 1 0 2 2 2 0 Starch synthase catalytic domain Wax2_C PF12076.3 gi|389848665|ref|YP_006350902.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 WAX2 C-terminal domain ABC2_membrane_2 PF12679.2 gi|389848667|ref|YP_006350904.1| - 4.9e-35 120.7 20.3 5.7e-35 120.5 14.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848667|ref|YP_006350904.1| - 8.4e-15 54.5 29.8 1.2e-14 54.0 20.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389848667|ref|YP_006350904.1| - 6.9e-09 35.1 23.2 6.9e-09 35.1 16.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389848667|ref|YP_006350904.1| - 2.8e-07 30.0 12.0 2.8e-07 30.0 8.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein PDR_CDR PF06422.7 gi|389848667|ref|YP_006350904.1| - 0.073 12.7 2.6 0.1 12.2 0.1 2.2 2 0 0 2 2 2 0 CDR ABC transporter DUF3333 PF11812.3 gi|389848667|ref|YP_006350904.1| - 2.1 8.3 3.9 5.5 6.9 2.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) ABC_tran PF00005.22 gi|389848668|ref|YP_006350905.1| - 5.9e-29 101.1 0.0 1.3e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|389848668|ref|YP_006350905.1| - 5.9e-11 42.8 0.0 5e-06 26.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|389848668|ref|YP_006350905.1| - 0.00041 20.7 0.5 0.00097 19.5 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|389848668|ref|YP_006350905.1| - 0.0028 16.9 0.1 0.91 8.7 0.0 2.6 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389848668|ref|YP_006350905.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389848668|ref|YP_006350905.1| - 0.016 14.3 0.0 0.041 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|389848668|ref|YP_006350905.1| - 0.02 15.2 0.2 0.052 13.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|389848668|ref|YP_006350905.1| - 0.076 12.9 0.1 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|389848668|ref|YP_006350905.1| - 0.099 12.5 0.0 0.33 10.9 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|389848668|ref|YP_006350905.1| - 0.12 12.3 0.3 1.1 9.2 0.2 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase CinA PF02464.12 gi|389848669|ref|YP_006350906.1| - 0.0096 15.3 0.4 0.018 14.5 0.3 1.4 1 0 0 1 1 1 1 Competence-damaged protein IncA PF04156.9 gi|389848669|ref|YP_006350906.1| - 0.032 13.8 2.0 0.035 13.7 0.3 1.8 2 0 0 2 2 2 0 IncA protein NosL PF05573.7 gi|389848670|ref|YP_006350907.1| - 2.4e-27 95.4 0.0 3.4e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 NosL ABC2_membrane_2 PF12679.2 gi|389848672|ref|YP_006350909.1| - 1e-20 73.7 22.2 2.7e-20 72.3 15.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848672|ref|YP_006350909.1| - 0.00021 20.5 21.6 0.0003 20.0 15.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389848672|ref|YP_006350909.1| - 0.0012 18.1 7.5 0.003 16.8 5.1 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389848673|ref|YP_006350910.1| - 1.4e-30 106.3 0.0 2.2e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848673|ref|YP_006350910.1| - 1.5e-10 41.5 0.1 2.6e-06 27.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|389848673|ref|YP_006350910.1| - 0.01 15.8 0.1 0.023 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|389848673|ref|YP_006350910.1| - 0.015 14.8 0.4 0.028 13.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|389848673|ref|YP_006350910.1| - 0.017 15.1 0.0 0.03 14.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|389848673|ref|YP_006350910.1| - 0.062 12.4 0.1 0.1 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389848673|ref|YP_006350910.1| - 0.078 12.4 0.2 0.41 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|389848673|ref|YP_006350910.1| - 0.14 10.8 1.3 0.21 10.3 0.3 1.6 2 0 0 2 2 2 0 ArgK protein AAA_15 PF13175.1 gi|389848673|ref|YP_006350910.1| - 0.2 10.6 0.0 3.2 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain PIF1 PF05970.9 gi|389848673|ref|YP_006350910.1| - 0.22 10.4 0.2 0.34 9.8 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase NosD PF05048.8 gi|389848674|ref|YP_006350911.1| - 2.2e-48 164.4 22.8 8.6e-44 149.4 11.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|389848674|ref|YP_006350911.1| - 2.5e-26 92.3 26.4 1e-18 67.5 6.3 2.3 1 1 1 2 2 2 2 Right handed beta helix region PEP_mutase PF13714.1 gi|389848675|ref|YP_006350912.1| - 0.049 12.8 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Gemini_mov PF01708.11 gi|389848675|ref|YP_006350912.1| - 0.076 12.5 2.4 0.22 11.0 0.0 2.5 2 1 0 2 2 2 0 Geminivirus putative movement protein COX2 PF00116.15 gi|389848676|ref|YP_006350913.1| - 3.3e-15 55.9 0.0 9.7e-15 54.4 0.0 1.8 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain TAT_signal PF10518.4 gi|389848676|ref|YP_006350913.1| - 2.2e-06 27.1 2.2 4.4e-06 26.2 1.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|389848676|ref|YP_006350913.1| - 1.1e-05 25.3 0.0 2.9e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|389848677|ref|YP_006350914.1| - 1.3e-18 67.0 0.5 2.9e-18 65.9 0.4 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389848677|ref|YP_006350914.1| - 1.9e-05 24.5 1.0 0.0004 20.2 0.7 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain DUF3353 PF11833.3 gi|389848678|ref|YP_006350915.1| - 0.0027 17.1 4.2 0.003 17.0 2.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) DUF3040 PF11239.3 gi|389848678|ref|YP_006350915.1| - 2.1 8.4 10.9 0.14 12.1 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF2249 PF10006.4 gi|389848680|ref|YP_006350917.1| - 1.1e-21 76.1 0.0 1.3e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) COX1 PF00115.15 gi|389848681|ref|YP_006350918.1| - 0.0014 17.3 6.0 0.0014 17.3 4.1 2.7 3 0 0 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I Oxidored_molyb PF00174.14 gi|389848682|ref|YP_006350919.1| - 2.2e-16 59.7 0.0 2.9e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ParA PF10609.4 gi|389848683|ref|YP_006350920.1| - 1e-25 89.4 0.1 1.7e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|389848683|ref|YP_006350920.1| - 5.5e-20 71.5 0.0 9e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|389848683|ref|YP_006350920.1| - 1.7e-15 56.3 0.1 3.7e-15 55.2 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|389848683|ref|YP_006350920.1| - 7.1e-14 51.5 1.3 7.1e-14 51.5 0.9 2.8 3 0 0 3 3 3 1 Domain of unknown function DUF59 AAA_26 PF13500.1 gi|389848683|ref|YP_006350920.1| - 3e-06 26.9 0.4 0.0043 16.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|389848683|ref|YP_006350920.1| - 3.8e-05 23.6 0.1 0.00022 21.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|389848683|ref|YP_006350920.1| - 0.0033 16.5 0.2 0.0059 15.7 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|389848683|ref|YP_006350920.1| - 0.0085 15.1 6.2 0.11 11.5 2.0 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|389848683|ref|YP_006350920.1| - 0.0086 15.1 0.3 0.019 14.0 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|389848683|ref|YP_006350920.1| - 0.047 13.0 3.2 0.07 12.5 0.1 2.5 3 0 0 3 3 3 0 AAA domain HEAT_2 PF13646.1 gi|389848684|ref|YP_006350921.1| - 1.1e-29 102.5 22.1 3e-14 53.0 0.6 2.7 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|389848684|ref|YP_006350921.1| - 4.7e-12 44.9 12.3 0.31 11.2 0.0 6.2 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.1 gi|389848684|ref|YP_006350921.1| - 3.3e-07 30.6 20.6 0.0031 17.9 1.7 5.5 4 2 2 6 6 6 3 HEAT-like repeat Adaptin_N PF01602.15 gi|389848684|ref|YP_006350921.1| - 0.014 13.7 0.5 0.081 11.2 0.0 2.1 2 0 0 2 2 2 0 Adaptin N terminal region Cnd1 PF12717.2 gi|389848684|ref|YP_006350921.1| - 0.029 14.2 0.0 0.49 10.2 0.0 2.9 1 1 2 3 3 3 0 non-SMC mitotic condensation complex subunit 1 LMWPc PF01451.16 gi|389848684|ref|YP_006350921.1| - 0.048 13.9 0.1 0.074 13.3 0.1 1.3 1 0 0 1 1 1 0 Low molecular weight phosphotyrosine protein phosphatase Phage_attach PF05354.6 gi|389848684|ref|YP_006350921.1| - 0.082 12.4 0.0 2 7.9 0.0 2.2 1 1 0 2 2 2 0 Phage Head-Tail Attachment HEAT_PBS PF03130.11 gi|389848684|ref|YP_006350921.1| - 0.16 12.5 14.5 13 6.6 0.0 5.7 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat Nitrate_red_del PF02613.10 gi|389848686|ref|YP_006350923.1| - 6.4e-07 29.2 8.3 5.7e-06 26.2 3.2 3.2 1 1 1 2 2 2 2 Nitrate reductase delta subunit EB_dh PF09459.5 gi|389848687|ref|YP_006350924.1| - 5e-29 101.5 5.3 2.5e-27 95.9 3.7 2.3 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Fer4_11 PF13247.1 gi|389848688|ref|YP_006350925.1| - 7.3e-35 118.8 6.6 7.3e-35 118.8 4.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389848688|ref|YP_006350925.1| - 6.6e-13 48.8 10.6 1.6e-07 31.5 1.2 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389848688|ref|YP_006350925.1| - 1.3e-11 44.1 17.7 1.4e-06 27.9 3.8 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|389848688|ref|YP_006350925.1| - 5.7e-10 39.3 15.5 0.017 15.3 0.1 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389848688|ref|YP_006350925.1| - 6.2e-07 28.9 28.4 3.4e-05 23.4 2.1 4.7 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|389848688|ref|YP_006350925.1| - 0.0007 19.0 29.7 0.013 15.1 1.9 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389848688|ref|YP_006350925.1| - 0.00091 18.9 26.6 0.054 13.3 0.7 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|389848688|ref|YP_006350925.1| - 0.0014 18.9 20.9 0.044 14.1 0.1 4.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|389848688|ref|YP_006350925.1| - 0.0049 17.3 13.9 0.54 10.8 0.1 3.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|389848688|ref|YP_006350925.1| - 0.015 15.7 5.9 0.015 15.7 4.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|389848688|ref|YP_006350925.1| - 0.02 14.7 1.9 0.02 14.7 1.3 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|389848688|ref|YP_006350925.1| - 0.12 12.7 0.1 0.12 12.7 0.1 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|389848688|ref|YP_006350925.1| - 0.23 11.5 23.7 0.018 15.0 5.8 3.7 1 1 3 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|389848688|ref|YP_006350925.1| - 0.92 10.0 31.3 0.083 13.2 1.3 4.4 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|389848688|ref|YP_006350925.1| - 5.4 7.8 27.2 32 5.3 7.9 4.5 3 2 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.17 gi|389848689|ref|YP_006350926.1| - 3.4e-93 312.7 0.0 5e-93 312.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|389848689|ref|YP_006350926.1| - 1.5e-20 73.0 0.0 3.2e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|389848689|ref|YP_006350926.1| - 0.015 15.1 0.5 0.032 14.0 0.3 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Peptidase_M19 PF01244.16 gi|389848690|ref|YP_006350927.1| - 0.097 11.5 0.0 0.097 11.5 0.0 1.1 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) DUF3040 PF11239.3 gi|389848690|ref|YP_006350927.1| - 0.11 12.5 1.5 0.15 12.1 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Cytochrom_B_N_2 PF13631.1 gi|389848691|ref|YP_006350928.1| - 1.4e-43 148.5 0.4 1.4e-43 148.5 0.3 3.4 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|389848691|ref|YP_006350928.1| - 3.6e-08 32.9 11.5 3.6e-08 32.9 8.0 2.6 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|389848691|ref|YP_006350928.1| - 5.2e-05 23.4 1.2 5.2e-05 23.4 0.8 2.4 3 0 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD IncA PF04156.9 gi|389848691|ref|YP_006350928.1| - 4.3 6.8 0.0 4.3 6.8 0.0 3.0 4 0 0 4 4 4 0 IncA protein Rieske PF00355.21 gi|389848692|ref|YP_006350929.1| - 8.2e-13 47.7 0.1 1.3e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Auto_anti-p27 PF06677.7 gi|389848692|ref|YP_006350929.1| - 0.041 13.6 0.6 0.041 13.6 0.4 2.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Claudin_2 PF13903.1 gi|389848693|ref|YP_006350930.1| - 0.024 14.3 2.6 0.18 11.4 1.8 2.0 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Sensor PF13796.1 gi|389848693|ref|YP_006350930.1| - 1.5 8.3 15.8 0.034 13.7 1.2 2.7 2 1 1 3 3 3 0 Putative sensor OppC_N PF12911.2 gi|389848693|ref|YP_006350930.1| - 9.4 5.6 9.9 2.7 7.4 0.3 3.2 3 1 1 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C TetR_N PF00440.18 gi|389848694|ref|YP_006350931.1| - 2.4e-11 43.1 0.2 3.9e-11 42.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|389848694|ref|YP_006350931.1| - 1.3e-08 34.8 0.6 4.7e-08 33.0 0.1 2.1 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_C_9 PF14514.1 gi|389848694|ref|YP_006350931.1| - 0.078 12.8 0.0 0.86 9.4 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, TetR, C-terminal MFS_1 PF07690.11 gi|389848695|ref|YP_006350932.1| - 2e-57 194.5 43.6 9.6e-34 116.6 11.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|389848695|ref|YP_006350932.1| - 4.6e-18 65.0 25.2 7.2e-09 34.7 1.5 3.5 1 1 3 4 4 4 3 Sugar (and other) transporter MFS_2 PF13347.1 gi|389848695|ref|YP_006350932.1| - 5e-12 44.9 20.2 7.9e-12 44.2 13.7 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|389848695|ref|YP_006350932.1| - 6.3e-05 21.2 15.6 0.0038 15.4 3.5 2.4 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|389848695|ref|YP_006350932.1| - 0.011 15.4 0.2 0.093 12.5 0.0 2.5 2 0 0 2 2 2 0 MFS_1 like family OATP PF03137.15 gi|389848695|ref|YP_006350932.1| - 0.56 8.1 5.7 3 5.7 0.7 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF4212 PF13937.1 gi|389848695|ref|YP_006350932.1| - 3.1 7.8 8.5 0.49 10.4 0.7 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4212) DUF2238 PF09997.4 gi|389848696|ref|YP_006350933.1| - 0.027 13.8 0.2 0.055 12.8 0.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) DUF4135 PF13575.1 gi|389848697|ref|YP_006350934.1| - 1.9e-77 260.8 0.0 2.5e-77 260.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.8 gi|389848697|ref|YP_006350934.1| - 3.5e-58 196.8 0.0 4.5e-58 196.5 0.0 1.1 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein Glyco_hydro_47 PF01532.15 gi|389848697|ref|YP_006350934.1| - 5.1e-06 25.4 0.0 3.5e-05 22.6 0.0 2.2 1 1 2 3 3 3 1 Glycosyl hydrolase family 47 DUF1680 PF07944.7 gi|389848697|ref|YP_006350934.1| - 2.8e-05 22.5 0.0 0.0053 15.0 0.0 2.2 2 0 0 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) GlcNAc_2-epim PF07221.6 gi|389848697|ref|YP_006350934.1| - 0.032 13.2 0.2 0.86 8.5 0.0 2.3 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) DUF3419 PF11899.3 gi|389848697|ref|YP_006350934.1| - 0.23 10.1 0.0 0.4 9.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Glyco_hydro_76 PF03663.9 gi|389848697|ref|YP_006350934.1| - 0.34 10.2 0.1 26 4.0 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 Strep_67kDa_ant PF06100.6 gi|389848698|ref|YP_006350935.1| - 8.9e-174 578.5 0.0 1e-173 578.3 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|389848698|ref|YP_006350935.1| - 4.7e-07 29.7 0.1 8.8e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|389848698|ref|YP_006350935.1| - 0.00075 18.5 0.2 0.44 9.3 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389848698|ref|YP_006350935.1| - 0.15 10.8 1.1 11 4.7 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4135 PF13575.1 gi|389848701|ref|YP_006350938.1| - 2.2e-79 267.1 0.0 3e-79 266.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.8 gi|389848701|ref|YP_006350938.1| - 1.7e-51 174.8 0.0 2.4e-51 174.3 0.0 1.2 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein ABC2_membrane_3 PF12698.2 gi|389848702|ref|YP_006350939.1| - 6.5e-08 31.9 15.9 6.5e-08 31.9 11.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848702|ref|YP_006350939.1| - 7.4e-05 22.0 22.5 0.00035 19.8 15.2 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389848702|ref|YP_006350939.1| - 0.12 11.2 22.3 0.0081 15.0 9.9 2.6 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389848703|ref|YP_006350940.1| - 1e-30 106.8 0.0 1.8e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848703|ref|YP_006350940.1| - 1.1e-12 48.5 0.7 3.7e-09 36.9 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|389848703|ref|YP_006350940.1| - 1.1e-05 24.7 0.0 0.011 14.7 0.0 2.4 1 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|389848703|ref|YP_006350940.1| - 3.2e-05 24.0 2.1 0.00032 20.8 0.7 2.7 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|389848703|ref|YP_006350940.1| - 0.00018 20.9 0.3 0.00037 19.9 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389848703|ref|YP_006350940.1| - 0.00099 18.5 0.2 0.017 14.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|389848703|ref|YP_006350940.1| - 0.0017 18.7 2.1 0.0032 17.8 1.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|389848703|ref|YP_006350940.1| - 0.0046 16.8 0.3 1.1 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|389848703|ref|YP_006350940.1| - 0.0058 17.1 0.1 0.018 15.5 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|389848703|ref|YP_006350940.1| - 0.0088 16.0 0.6 0.065 13.2 0.1 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|389848703|ref|YP_006350940.1| - 0.02 14.5 0.1 0.069 12.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|389848703|ref|YP_006350940.1| - 0.032 13.6 0.1 0.07 12.5 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|389848703|ref|YP_006350940.1| - 0.036 14.0 4.2 4.6 7.2 2.9 2.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF1383 PF07134.6 gi|389848703|ref|YP_006350940.1| - 0.037 12.9 0.4 0.057 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) AAA_10 PF12846.2 gi|389848703|ref|YP_006350940.1| - 0.037 13.4 0.1 0.056 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain SMC_N PF02463.14 gi|389848703|ref|YP_006350940.1| - 0.043 13.0 5.0 0.56 9.3 1.5 2.5 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|389848703|ref|YP_006350940.1| - 0.047 12.5 3.4 0.84 8.4 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|389848703|ref|YP_006350940.1| - 0.068 12.8 0.3 0.19 11.4 0.2 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|389848703|ref|YP_006350940.1| - 0.1 12.2 0.1 0.3 10.7 0.1 1.8 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|389848703|ref|YP_006350940.1| - 0.12 12.5 2.7 2 8.6 1.9 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|389848703|ref|YP_006350940.1| - 0.24 11.2 1.4 1.1 9.1 1.0 2.4 1 1 0 1 1 1 0 AAA domain CBM_5_12 PF02839.9 gi|389848704|ref|YP_006350941.1| - 2.3e-13 49.4 9.7 8e-13 47.7 6.7 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain PKD PF00801.15 gi|389848704|ref|YP_006350941.1| - 2.9e-09 36.5 6.3 2.9e-09 36.5 4.4 2.0 2 0 0 2 2 2 1 PKD domain HATPase_c PF02518.21 gi|389848706|ref|YP_006350943.1| - 1.5e-20 72.9 0.0 5.3e-20 71.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|389848706|ref|YP_006350943.1| - 4.2e-06 26.7 1.4 0.0002 21.3 0.5 2.8 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|389848706|ref|YP_006350943.1| - 6.5e-06 25.8 0.2 0.00018 21.2 0.0 3.2 3 0 0 3 3 3 1 PAS domain PAS_9 PF13426.1 gi|389848706|ref|YP_006350943.1| - 6.6e-06 26.4 2.4 0.00015 22.0 0.2 3.2 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|389848706|ref|YP_006350943.1| - 8.6e-06 25.5 0.0 1.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|389848706|ref|YP_006350943.1| - 0.00014 21.6 1.7 0.006 16.3 0.0 2.9 2 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|389848706|ref|YP_006350943.1| - 0.00023 20.7 0.0 0.00055 19.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|389848706|ref|YP_006350943.1| - 0.0042 17.0 1.1 0.0083 16.1 0.7 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|389848706|ref|YP_006350943.1| - 0.013 15.4 2.3 1.1 9.2 0.1 3.2 2 2 1 3 3 3 0 PAS fold PAS_10 PF13596.1 gi|389848706|ref|YP_006350943.1| - 0.096 12.9 0.1 0.45 10.8 0.0 2.1 1 1 0 1 1 1 0 PAS domain Cas_Cas1 PF01867.11 gi|389848706|ref|YP_006350943.1| - 0.11 11.5 0.2 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas1 DUF547 PF04784.9 gi|389848707|ref|YP_006350944.1| - 1.2e-26 92.8 0.0 1.7e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 HTH_10 PF04967.7 gi|389848708|ref|YP_006350945.1| - 4.8e-16 58.0 0.0 7.4e-16 57.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HrcA_DNA-bdg PF03444.10 gi|389848708|ref|YP_006350945.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.1 gi|389848708|ref|YP_006350945.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DDE_Tnp_IS240 PF13610.1 gi|389848709|ref|YP_006350946.1| - 3.1e-05 23.9 0.0 3.2e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|389848710|ref|YP_006350947.1| - 8e-05 22.0 0.0 8.8e-05 21.9 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|389848710|ref|YP_006350947.1| - 0.031 14.1 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Methyltransf_2 PF00891.13 gi|389848711|ref|YP_006350948.1| - 7.3e-23 81.0 0.0 9.6e-23 80.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|389848711|ref|YP_006350948.1| - 1.4e-12 48.1 0.1 3.3e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389848711|ref|YP_006350948.1| - 4.6e-10 39.4 0.1 3.2e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389848711|ref|YP_006350948.1| - 1.2e-08 35.3 0.0 2.2e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389848711|ref|YP_006350948.1| - 0.0001 21.7 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Dimerisation PF08100.6 gi|389848711|ref|YP_006350948.1| - 0.0017 18.1 0.2 0.0085 15.9 0.0 2.2 3 0 0 3 3 3 1 Dimerisation domain Methyltransf_11 PF08241.7 gi|389848711|ref|YP_006350948.1| - 0.0039 17.6 0.0 0.007 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389848711|ref|YP_006350948.1| - 0.044 13.3 0.0 0.091 12.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Abhydrolase_6 PF12697.2 gi|389848712|ref|YP_006350949.1| - 1.6e-34 119.8 2.3 2e-34 119.4 1.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848712|ref|YP_006350949.1| - 1.1e-19 70.9 0.0 3.5e-18 66.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389848712|ref|YP_006350949.1| - 4.1e-15 55.8 0.0 1e-14 54.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389848712|ref|YP_006350949.1| - 0.0012 18.2 0.0 2.9 7.1 0.0 2.9 2 1 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|389848712|ref|YP_006350949.1| - 0.0031 16.7 0.0 0.1 11.8 0.0 2.6 3 0 0 3 3 3 1 Prolyl oligopeptidase family Esterase PF00756.15 gi|389848712|ref|YP_006350949.1| - 0.036 13.4 0.1 0.081 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative esterase AMP-binding PF00501.23 gi|389848713|ref|YP_006350950.1| - 4.7e-90 301.9 0.2 5.6e-90 301.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389848713|ref|YP_006350950.1| - 8.7e-17 61.8 0.4 1.8e-16 60.8 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.14 gi|389848713|ref|YP_006350950.1| - 4.5e-06 26.3 0.4 0.03 13.9 0.1 2.2 2 0 0 2 2 2 2 6,7-dimethyl-8-ribityllumazine synthase HTH_10 PF04967.7 gi|389848714|ref|YP_006350951.1| - 3.2e-20 71.4 0.0 7.8e-20 70.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|389848714|ref|YP_006350951.1| - 8.8e-09 36.0 1.4 2.1e-08 34.7 0.2 2.1 2 0 0 2 2 2 1 GAF domain Phage_integrase PF00589.17 gi|389848714|ref|YP_006350951.1| - 6.9e-07 29.0 0.1 3.4e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Phage integrase family GAF_3 PF13492.1 gi|389848714|ref|YP_006350951.1| - 1.1e-05 25.5 0.1 5e-05 23.4 0.1 2.3 1 1 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|389848714|ref|YP_006350951.1| - 0.025 13.8 0.0 0.078 12.2 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|389848714|ref|YP_006350951.1| - 0.078 12.3 0.0 0.25 10.6 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family AMP-binding PF00501.23 gi|389848715|ref|YP_006350952.1| - 1e-95 320.5 0.1 1.3e-95 320.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389848715|ref|YP_006350952.1| - 1.1e-17 64.7 0.2 2.4e-17 63.6 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4212 PF13937.1 gi|389848716|ref|YP_006350953.1| - 6.9e-24 83.6 0.0 8.4e-24 83.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF3311 PF11755.3 gi|389848716|ref|YP_006350953.1| - 0.0025 17.2 0.0 0.0047 16.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3311) DUF485 PF04341.7 gi|389848716|ref|YP_006350953.1| - 0.019 14.6 0.5 0.029 14.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 SSF PF00474.12 gi|389848717|ref|YP_006350954.1| - 1.3e-54 185.3 33.8 2e-54 184.7 23.4 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.21 gi|389848718|ref|YP_006350955.1| - 8.8e-40 136.1 1.8 1e-39 135.8 1.2 1.1 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.17 gi|389848718|ref|YP_006350955.1| - 0.025 14.5 0.0 0.2 11.5 0.0 2.2 1 1 0 2 2 2 0 MGS-like domain ETF PF01012.16 gi|389848718|ref|YP_006350955.1| - 0.036 13.7 0.1 1.4 8.6 0.0 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain GTP-bdg_N PF13167.1 gi|389848718|ref|YP_006350955.1| - 0.067 13.3 0.0 0.13 12.4 0.0 1.6 1 1 0 1 1 1 0 GTP-binding GTPase N-terminal DUF1785 PF08699.5 gi|389848719|ref|YP_006350956.1| - 0.012 14.9 0.1 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1785) SBP56 PF05694.6 gi|389848720|ref|YP_006350957.1| - 6.2e-188 624.9 0.8 7.2e-188 624.7 0.6 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Beta_propel PF09826.4 gi|389848720|ref|YP_006350957.1| - 0.0012 17.3 0.0 0.0018 16.7 0.0 1.2 1 0 0 1 1 1 1 Beta propeller domain Lactonase PF10282.4 gi|389848720|ref|YP_006350957.1| - 0.0018 17.4 0.0 0.048 12.7 0.0 2.3 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Fer2 PF00111.22 gi|389848721|ref|YP_006350958.1| - 3.5e-17 61.9 0.4 5.7e-17 61.2 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_S8 PF00082.17 gi|389848722|ref|YP_006350959.1| - 1.6e-51 175.1 11.8 1.6e-51 175.1 8.2 2.3 2 0 0 2 2 2 1 Subtilase family Big_3_4 PF13754.1 gi|389848722|ref|YP_006350959.1| - 0.00033 20.9 10.2 0.00033 20.9 7.0 5.6 5 1 1 6 6 6 2 Bacterial Ig-like domain (group 3) HxxPF_rpt PF13745.1 gi|389848722|ref|YP_006350959.1| - 0.0096 16.2 1.0 3.1 8.1 0.0 2.7 2 0 0 2 2 2 2 HxxPF-repeated domain DUF4625 PF15418.1 gi|389848722|ref|YP_006350959.1| - 0.011 15.8 6.3 0.098 12.7 1.1 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4625) Big_3_2 PF12245.3 gi|389848722|ref|YP_006350959.1| - 0.14 11.7 0.0 0.14 11.7 0.0 3.7 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 3) Rieske PF00355.21 gi|389848723|ref|YP_006350960.1| - 6.1e-22 77.0 0.1 1.1e-21 76.1 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.14 gi|389848723|ref|YP_006350960.1| - 1.5e-18 67.2 0.1 3.3e-18 66.1 0.0 1.6 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Ring_hydroxyl_B PF00866.13 gi|389848724|ref|YP_006350961.1| - 1.7e-42 144.5 4.9 1.9e-42 144.3 3.4 1.0 1 0 0 1 1 1 1 Ring hydroxylating beta subunit SnoaL_4 PF13577.1 gi|389848724|ref|YP_006350961.1| - 1.2e-06 28.4 2.1 5.8e-06 26.2 1.4 1.8 1 1 0 1 1 1 1 SnoaL-like domain Lyase_aromatic PF00221.14 gi|389848726|ref|YP_006350963.1| - 1.7e-172 574.1 0.5 2.5e-172 573.5 0.3 1.2 1 0 0 1 1 1 1 Aromatic amino acid lyase Cupin_2 PF07883.6 gi|389848727|ref|YP_006350964.1| - 2.1e-07 30.3 0.0 3.3e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|389848727|ref|YP_006350964.1| - 0.00088 18.9 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|389848727|ref|YP_006350964.1| - 0.0015 17.9 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|389848727|ref|YP_006350964.1| - 0.0034 17.0 0.2 0.0049 16.5 0.1 1.3 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|389848727|ref|YP_006350964.1| - 0.0065 15.8 0.0 0.0092 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Hemerythrin PF01814.18 gi|389848728|ref|YP_006350965.1| - 2.5e-18 66.5 12.7 2.5e-18 66.5 8.8 1.7 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.9 gi|389848728|ref|YP_006350965.1| - 9.3e-17 60.1 0.2 2e-16 59.0 0.1 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) DUF615 PF04751.9 gi|389848728|ref|YP_006350965.1| - 0.0054 16.3 2.7 0.068 12.8 0.9 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF615) DUF3384 PF11864.3 gi|389848728|ref|YP_006350965.1| - 0.018 13.4 0.8 0.21 9.9 0.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3384) Apolipoprotein PF01442.13 gi|389848728|ref|YP_006350965.1| - 0.099 12.1 4.5 0.2 11.1 3.2 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain FUSC PF04632.7 gi|389848728|ref|YP_006350965.1| - 0.17 10.3 0.2 0.21 9.9 0.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family CorA PF01544.13 gi|389848728|ref|YP_006350965.1| - 0.22 10.4 4.3 0.36 9.8 2.5 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4618 PF15397.1 gi|389848728|ref|YP_006350965.1| - 0.34 10.2 2.4 0.41 9.9 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) APG6 PF04111.7 gi|389848728|ref|YP_006350965.1| - 0.6 9.1 2.9 1.5 7.8 2.0 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 NAPRTase PF04095.11 gi|389848729|ref|YP_006350966.1| - 4.8e-17 62.0 0.0 8.2e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family MFS_1 PF07690.11 gi|389848730|ref|YP_006350967.1| - 1.6e-38 132.3 46.6 1.3e-37 129.3 27.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Ost4 PF10215.4 gi|389848730|ref|YP_006350967.1| - 0.69 9.4 4.7 3.2 7.3 0.0 3.1 3 0 0 3 3 3 0 Oligosaccaryltransferase HTH_10 PF04967.7 gi|389848731|ref|YP_006350968.1| - 1.5e-14 53.3 0.1 2.5e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|389848731|ref|YP_006350968.1| - 0.0046 16.3 0.0 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389848731|ref|YP_006350968.1| - 0.0066 16.1 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.1 gi|389848731|ref|YP_006350968.1| - 0.0098 15.4 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|389848731|ref|YP_006350968.1| - 0.018 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.22 gi|389848731|ref|YP_006350968.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.1 gi|389848731|ref|YP_006350968.1| - 0.067 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|389848731|ref|YP_006350968.1| - 0.11 11.8 0.1 0.21 10.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HSP20 PF00011.16 gi|389848732|ref|YP_006350969.1| - 2.5e-25 88.2 0.8 3.1e-25 87.9 0.5 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|389848732|ref|YP_006350969.1| - 0.0027 18.2 0.0 0.0069 16.8 0.0 1.6 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|389848732|ref|YP_006350969.1| - 0.024 14.2 0.3 0.036 13.6 0.2 1.4 1 0 0 1 1 1 0 GvpH ABC_tran PF00005.22 gi|389848733|ref|YP_006350970.1| - 4.8e-30 104.6 0.0 6.5e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848733|ref|YP_006350970.1| - 1.2e-15 58.2 0.0 2.4e-10 40.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|389848733|ref|YP_006350970.1| - 0.0049 15.9 0.0 0.016 14.2 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|389848733|ref|YP_006350970.1| - 0.012 15.7 0.0 0.055 13.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|389848733|ref|YP_006350970.1| - 0.017 15.4 0.6 0.026 14.8 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|389848733|ref|YP_006350970.1| - 0.034 12.6 0.1 0.094 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|389848733|ref|YP_006350970.1| - 0.049 13.0 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|389848733|ref|YP_006350970.1| - 0.086 12.7 0.1 0.29 11.0 0.0 2.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|389848733|ref|YP_006350970.1| - 0.086 13.6 0.0 0.17 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|389848733|ref|YP_006350970.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|389848733|ref|YP_006350970.1| - 0.67 9.5 4.8 0.17 11.4 0.5 2.1 3 0 0 3 3 3 0 P-loop containing region of AAA domain DoxX_2 PF13564.1 gi|389848735|ref|YP_006350972.1| - 0.0024 17.8 3.4 0.0024 17.8 2.3 1.6 1 1 0 1 1 1 1 DoxX-like family DUF2101 PF09874.4 gi|389848735|ref|YP_006350972.1| - 0.015 14.8 3.4 0.016 14.7 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) CybS PF05328.7 gi|389848735|ref|YP_006350972.1| - 0.33 10.5 2.0 0.53 9.8 1.1 1.6 1 1 0 1 1 1 0 CybS UbiA PF01040.13 gi|389848735|ref|YP_006350972.1| - 0.63 9.2 8.1 0.79 8.8 5.6 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family FUSC_2 PF13515.1 gi|389848735|ref|YP_006350972.1| - 7.3 6.5 11.4 2e+02 1.8 7.9 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DUF4401 PF14351.1 gi|389848736|ref|YP_006350973.1| - 0.037 13.0 0.3 0.037 13.0 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4401) EamA PF00892.15 gi|389848737|ref|YP_006350974.1| - 1.6e-30 105.7 32.7 1.5e-19 70.2 6.1 2.9 2 1 1 3 3 3 3 EamA-like transporter family EmrE PF13536.1 gi|389848737|ref|YP_006350974.1| - 3.2e-07 30.5 8.1 3.2e-07 30.5 5.6 3.9 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|389848737|ref|YP_006350974.1| - 0.00046 19.8 3.6 0.00046 19.8 2.5 2.5 2 1 0 2 2 2 2 Triose-phosphate Transporter family Nuc_sug_transp PF04142.10 gi|389848737|ref|YP_006350974.1| - 0.084 11.9 0.0 0.084 11.9 0.0 2.8 3 1 1 4 4 4 0 Nucleotide-sugar transporter MarR_2 PF12802.2 gi|389848738|ref|YP_006350975.1| - 1.2e-05 24.8 0.2 2.8e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389848738|ref|YP_006350975.1| - 1.7e-05 24.4 0.1 0.00023 20.7 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family DUF1724 PF08350.5 gi|389848738|ref|YP_006350975.1| - 3.4e-05 23.2 0.0 6.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR PF01047.17 gi|389848738|ref|YP_006350975.1| - 0.00016 21.2 0.0 0.00045 19.8 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389848738|ref|YP_006350975.1| - 0.00055 19.2 0.0 0.0015 17.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389848738|ref|YP_006350975.1| - 0.004 16.7 0.3 0.017 14.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|389848738|ref|YP_006350975.1| - 0.0067 16.7 0.4 0.083 13.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389848738|ref|YP_006350975.1| - 0.015 15.1 0.9 2.9 7.7 0.0 3.2 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|389848738|ref|YP_006350975.1| - 0.034 14.1 0.0 0.076 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|389848738|ref|YP_006350975.1| - 0.04 14.0 0.1 0.44 10.7 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn helix Methyltransf_11 PF08241.7 gi|389848741|ref|YP_006350978.1| - 8.8e-15 54.9 0.0 1.3e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389848741|ref|YP_006350978.1| - 5.5e-13 48.9 0.0 6.8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389848741|ref|YP_006350978.1| - 7.6e-11 42.2 0.0 1.6e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389848741|ref|YP_006350978.1| - 3.1e-10 39.8 0.0 3.7e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389848741|ref|YP_006350978.1| - 4e-09 37.0 0.0 6.2e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|389848741|ref|YP_006350978.1| - 6.1e-08 32.2 0.0 8.5e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|389848741|ref|YP_006350978.1| - 3.1e-07 30.7 0.0 4.8e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389848741|ref|YP_006350978.1| - 2.7e-05 24.1 0.0 3.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|389848741|ref|YP_006350978.1| - 0.0031 16.2 0.0 0.0038 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.1 gi|389848741|ref|YP_006350978.1| - 0.0038 18.0 0.0 0.0084 16.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|389848741|ref|YP_006350978.1| - 0.032 13.3 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB HTH_IclR PF09339.5 gi|389848743|ref|YP_006350980.1| - 2.3e-07 30.2 0.0 6.2e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389848743|ref|YP_006350980.1| - 2.5e-05 23.8 0.0 7.6e-05 22.3 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389848743|ref|YP_006350980.1| - 0.00059 19.1 0.0 0.0011 18.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389848743|ref|YP_006350980.1| - 0.001 18.6 0.2 0.003 17.2 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389848743|ref|YP_006350980.1| - 0.0089 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family EAP30 PF04157.11 gi|389848743|ref|YP_006350980.1| - 0.043 12.9 0.3 0.1 11.7 0.2 1.6 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_27 PF13463.1 gi|389848743|ref|YP_006350980.1| - 0.062 13.6 0.2 0.27 11.5 0.0 2.1 1 1 1 2 2 2 0 Winged helix DNA-binding domain Orthoreo_P10 PF07204.6 gi|389848743|ref|YP_006350980.1| - 0.18 11.5 0.1 4.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 CARDB PF07705.6 gi|389848744|ref|YP_006350981.1| - 6.9e-06 26.0 9.3 0.00069 19.6 0.1 3.6 3 1 0 3 3 3 2 CARDB AKAP28 PF14469.1 gi|389848744|ref|YP_006350981.1| - 0.016 14.7 0.1 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 28 kDa A-kinase anchor NPCBM_assoc PF10633.4 gi|389848744|ref|YP_006350981.1| - 0.029 14.4 7.6 0.48 10.5 0.2 4.1 3 2 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|389848744|ref|YP_006350981.1| - 0.066 13.2 14.3 0.14 12.1 0.3 4.0 4 0 0 4 4 4 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|389848745|ref|YP_006350982.1| - 4.5e-33 114.4 0.0 6.9e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848745|ref|YP_006350982.1| - 7.3e-12 45.8 0.0 0.00012 22.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389848745|ref|YP_006350982.1| - 3.9e-06 26.2 0.2 0.00021 20.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|389848745|ref|YP_006350982.1| - 9.4e-05 23.2 1.0 0.0003 21.6 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389848745|ref|YP_006350982.1| - 0.0001 21.7 0.1 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|389848745|ref|YP_006350982.1| - 0.00012 21.9 0.1 0.00062 19.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|389848745|ref|YP_006350982.1| - 0.00023 20.4 0.0 0.00038 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|389848745|ref|YP_006350982.1| - 0.00041 19.8 0.0 0.047 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|389848745|ref|YP_006350982.1| - 0.00048 19.6 0.0 0.0009 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|389848745|ref|YP_006350982.1| - 0.00063 19.6 0.2 0.0024 17.8 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|389848745|ref|YP_006350982.1| - 0.00078 19.4 1.1 0.0027 17.6 0.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|389848745|ref|YP_006350982.1| - 0.001 19.4 0.1 0.0023 18.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|389848745|ref|YP_006350982.1| - 0.0012 19.1 0.1 0.013 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389848745|ref|YP_006350982.1| - 0.0019 18.3 0.1 0.017 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|389848745|ref|YP_006350982.1| - 0.017 14.8 0.0 0.048 13.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|389848745|ref|YP_006350982.1| - 0.019 14.4 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF3987 PF13148.1 gi|389848745|ref|YP_006350982.1| - 0.031 12.8 0.0 0.059 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_15 PF13175.1 gi|389848745|ref|YP_006350982.1| - 0.037 13.0 0.0 0.75 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|389848745|ref|YP_006350982.1| - 0.04 13.8 0.2 0.089 12.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|389848745|ref|YP_006350982.1| - 0.089 12.4 0.1 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|389848745|ref|YP_006350982.1| - 0.093 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|389848745|ref|YP_006350982.1| - 0.14 10.7 0.0 0.75 8.3 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein FtsX PF02687.16 gi|389848746|ref|YP_006350983.1| - 2.5e-21 75.6 7.3 2.5e-21 75.6 5.0 2.1 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|389848746|ref|YP_006350983.1| - 4e-19 69.1 3.1 4e-19 69.1 2.1 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|389848747|ref|YP_006350984.1| - 2.8e-22 78.7 13.2 3.1e-22 78.6 6.5 2.1 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|389848747|ref|YP_006350984.1| - 4.5e-22 78.7 0.9 4.5e-22 78.7 0.6 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain SUKH_5 PF14567.1 gi|389848747|ref|YP_006350984.1| - 0.02 14.3 0.0 0.072 12.5 0.0 1.8 2 0 0 2 2 2 0 SMI1-KNR4 cell-wall PQQ_2 PF13360.1 gi|389848748|ref|YP_006350985.1| - 3e-28 98.8 6.6 1.2e-09 38.0 0.1 2.9 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389848748|ref|YP_006350985.1| - 4.2e-20 70.1 4.6 0.00039 19.8 0.0 6.2 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389848748|ref|YP_006350985.1| - 1.5e-16 60.0 15.1 0.0011 19.2 0.1 6.3 6 0 0 6 6 6 6 PQQ-like domain DUF4357 PF14267.1 gi|389848748|ref|YP_006350985.1| - 0.09 12.3 0.0 1.4 8.5 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4357) Cas_Cas02710 PF09670.5 gi|389848749|ref|YP_006350986.1| - 0.0078 14.8 0.0 0.012 14.2 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.6 gi|389848749|ref|YP_006350986.1| - 0.018 13.4 0.0 0.021 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) DUF4364 PF14277.1 gi|389848749|ref|YP_006350986.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) tRNA-synt_2b PF00587.20 gi|389848750|ref|YP_006350987.1| - 1.5e-38 132.1 0.1 2.5e-38 131.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|389848750|ref|YP_006350987.1| - 4.9e-18 64.8 0.5 1.5e-17 63.3 0.4 1.9 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.16 gi|389848750|ref|YP_006350987.1| - 3.6e-14 52.3 0.3 6.8e-14 51.4 0.2 1.5 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.9 gi|389848750|ref|YP_006350987.1| - 4.7e-13 48.7 0.0 8.9e-13 47.9 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4270 PF14092.1 gi|389848750|ref|YP_006350987.1| - 0.089 11.4 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4270) ComA PF02679.10 gi|389848751|ref|YP_006350988.1| - 1.1e-81 273.4 0.0 1.2e-81 273.3 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Vinculin PF01044.14 gi|389848751|ref|YP_006350988.1| - 0.038 12.0 0.1 0.048 11.6 0.0 1.0 1 0 0 1 1 1 0 Vinculin family MmgE_PrpD PF03972.9 gi|389848752|ref|YP_006350989.1| - 1.8e-98 329.6 4.8 2e-98 329.4 3.3 1.0 1 0 0 1 1 1 1 MmgE/PrpD family CDC37_C PF08564.5 gi|389848752|ref|YP_006350989.1| - 0.054 13.3 0.0 9.2 6.1 0.0 2.7 3 0 0 3 3 3 0 Cdc37 C terminal domain SPOUT_MTase PF02590.12 gi|389848752|ref|YP_006350989.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.6 1 1 0 1 1 1 0 Predicted SPOUT methyltransferase DUF77 PF01910.12 gi|389848753|ref|YP_006350990.1| - 2e-16 59.4 1.8 2.3e-16 59.2 1.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 UPF0515 PF15135.1 gi|389848753|ref|YP_006350990.1| - 0.033 13.2 0.5 0.032 13.2 0.4 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Adeno_terminal PF02459.10 gi|389848753|ref|YP_006350990.1| - 0.06 11.5 0.1 0.061 11.4 0.1 1.0 1 0 0 1 1 1 0 Adenoviral DNA terminal protein Complex1_51K PF01512.12 gi|389848753|ref|YP_006350990.1| - 0.098 12.3 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit PALP PF00291.20 gi|389848754|ref|YP_006350991.1| - 1.6e-56 191.8 0.3 1.8e-56 191.6 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|389848754|ref|YP_006350991.1| - 0.0095 15.4 0.6 1.5 8.4 0.0 2.8 2 1 0 2 2 2 2 Zinc-binding dehydrogenase NuiA PF07924.6 gi|389848754|ref|YP_006350991.1| - 0.079 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Nuclease A inhibitor-like protein Mrr_cat PF04471.7 gi|389848755|ref|YP_006350992.1| - 2.7e-27 94.8 0.0 5.4e-27 93.8 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|389848755|ref|YP_006350992.1| - 0.0084 15.2 2.3 0.023 13.9 1.6 1.7 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389848755|ref|YP_006350992.1| - 0.13 11.7 8.6 0.026 13.9 3.4 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|389848755|ref|YP_006350992.1| - 0.29 10.9 7.5 0.69 9.7 5.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|389848755|ref|YP_006350992.1| - 7.3 6.4 8.3 2.6 7.9 0.1 2.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Acyl-CoA_dh_2 PF08028.6 gi|389848757|ref|YP_006350994.1| - 0.034 14.3 6.9 0.14 12.4 0.0 3.4 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain HTH_10 PF04967.7 gi|389848759|ref|YP_006350996.1| - 2.5e-11 42.9 0.0 3.9e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389848759|ref|YP_006350996.1| - 0.0012 18.3 0.0 0.0079 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|389848759|ref|YP_006350996.1| - 0.02 14.2 0.2 0.077 12.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389848759|ref|YP_006350996.1| - 0.065 12.9 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 MarR family FMN_dh PF01070.13 gi|389848760|ref|YP_006350997.1| - 2.2e-32 112.3 4.8 4e-21 75.2 2.1 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|389848760|ref|YP_006350997.1| - 3.3e-06 26.2 2.6 7.5e-06 25.1 1.8 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|389848760|ref|YP_006350997.1| - 2.9e-05 23.1 9.3 0.00084 18.3 0.1 4.1 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain TFIIB PF00382.14 gi|389848761|ref|YP_006350998.1| - 5.1e-38 128.7 0.0 4.2e-20 71.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|389848761|ref|YP_006350998.1| - 2.3e-05 23.6 0.1 5.3e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|389848761|ref|YP_006350998.1| - 0.0014 17.8 2.3 0.0084 15.3 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_C PF02984.14 gi|389848761|ref|YP_006350998.1| - 0.0036 17.2 0.0 1.7 8.6 0.0 2.3 1 1 1 2 2 2 2 Cyclin, C-terminal domain HTH_24 PF13412.1 gi|389848761|ref|YP_006350998.1| - 0.0085 15.4 0.0 0.03 13.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389848761|ref|YP_006350998.1| - 0.011 15.3 0.2 0.11 12.0 0.0 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|389848761|ref|YP_006350998.1| - 0.011 15.2 0.5 0.037 13.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Mga PF08280.6 gi|389848761|ref|YP_006350998.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain GAF_2 PF13185.1 gi|389848763|ref|YP_006351000.1| - 6.4e-27 94.8 0.2 1.7e-10 41.5 0.0 3.6 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.7 gi|389848763|ref|YP_006351000.1| - 2.7e-20 71.6 0.0 7.9e-20 70.1 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|389848763|ref|YP_006351000.1| - 2e-15 56.9 0.2 0.00026 21.1 0.0 3.4 3 0 0 3 3 3 3 GAF domain Response_reg PF00072.19 gi|389848763|ref|YP_006351000.1| - 6.7e-14 51.8 0.2 2.2e-13 50.1 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|389848763|ref|YP_006351000.1| - 2.6e-11 43.8 0.8 0.0046 17.0 0.0 3.7 3 0 0 3 3 3 3 GAF domain Sigma70_r4 PF04545.11 gi|389848763|ref|YP_006351000.1| - 0.017 14.4 0.1 0.044 13.0 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 FleQ PF06490.6 gi|389848763|ref|YP_006351000.1| - 0.047 13.8 0.2 0.34 11.0 0.0 2.7 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ Ecl1 PF12855.2 gi|389848764|ref|YP_006351001.1| - 0.0012 18.0 1.2 0.0019 17.4 0.8 1.4 1 1 0 1 1 1 1 Life-span regulatory factor DUF2116 PF09889.4 gi|389848764|ref|YP_006351001.1| - 0.0017 18.0 0.9 0.12 12.2 0.3 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.8 gi|389848764|ref|YP_006351001.1| - 0.0082 15.9 2.0 0.01 15.6 0.7 1.6 2 0 0 2 2 2 1 YHS domain DUF581 PF04570.9 gi|389848764|ref|YP_006351001.1| - 0.0094 15.2 0.9 0.029 13.6 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF581) zf-FCS PF06467.9 gi|389848764|ref|YP_006351001.1| - 0.015 14.9 5.9 0.11 12.1 4.1 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zinc_ribbon_2 PF13240.1 gi|389848764|ref|YP_006351001.1| - 0.55 9.7 2.7 0.56 9.7 0.1 2.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389848764|ref|YP_006351001.1| - 0.65 9.2 3.9 2 7.7 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF329 PF03884.9 gi|389848764|ref|YP_006351001.1| - 1.9 8.0 5.7 17 5.0 4.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-HYPF PF07503.7 gi|389848764|ref|YP_006351001.1| - 6 6.3 6.2 9.8 5.6 0.4 2.3 2 0 0 2 2 2 0 HypF finger Peptidase_S8 PF00082.17 gi|389848765|ref|YP_006351002.1| - 4e-58 196.7 8.5 6.4e-58 196.1 5.9 1.3 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.16 gi|389848765|ref|YP_006351002.1| - 0.0005 20.1 0.1 0.044 13.9 0.0 2.8 2 0 0 2 2 2 1 Fibronectin type III domain CBM_4_9 PF02018.12 gi|389848765|ref|YP_006351002.1| - 0.01 15.8 0.3 0.32 10.9 0.1 2.9 3 0 0 3 3 3 0 Carbohydrate binding domain CHRD PF07452.7 gi|389848765|ref|YP_006351002.1| - 0.027 15.0 0.0 0.11 13.0 0.0 2.1 1 1 0 1 1 1 0 CHRD domain DUF4225 PF13988.1 gi|389848765|ref|YP_006351002.1| - 0.031 13.7 0.1 0.064 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) Inhibitor_I9 PF05922.11 gi|389848765|ref|YP_006351002.1| - 0.12 12.9 0.1 0.34 11.5 0.1 1.8 1 0 0 1 1 1 0 Peptidase inhibitor I9 TAT_signal PF10518.4 gi|389848765|ref|YP_006351002.1| - 0.26 11.3 2.7 1.4 9.1 1.9 2.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TRAM PF01938.15 gi|389848766|ref|YP_006351003.1| - 4e-16 58.5 0.9 6.2e-16 57.9 0.6 1.3 1 0 0 1 1 1 1 TRAM domain Nramp PF01566.13 gi|389848767|ref|YP_006351004.1| - 6.7e-64 215.9 34.6 1e-63 215.3 24.0 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein SH3_2 PF07653.12 gi|389848768|ref|YP_006351005.1| - 1.6e-19 69.1 1.3 9.3e-12 44.2 0.2 2.1 2 0 0 2 2 2 2 Variant SH3 domain SH3_9 PF14604.1 gi|389848768|ref|YP_006351005.1| - 1.5e-12 46.8 3.7 1.2e-07 31.2 0.5 2.2 2 0 0 2 2 2 2 Variant SH3 domain SH3_1 PF00018.23 gi|389848768|ref|YP_006351005.1| - 7.3e-09 34.8 2.7 0.00064 19.0 0.5 2.2 2 0 0 2 2 2 2 SH3 domain SH3_3 PF08239.6 gi|389848768|ref|YP_006351005.1| - 6.7e-05 22.9 3.7 0.023 14.8 0.2 2.5 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_4 PF06347.8 gi|389848768|ref|YP_006351005.1| - 0.082 12.4 5.2 2.8 7.5 0.1 2.5 2 0 0 2 2 2 0 Bacterial SH3 domain DDE_Tnp_IS240 PF13610.1 gi|389848769|ref|YP_006351006.1| - 1.9e-24 86.2 0.0 2.5e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|389848769|ref|YP_006351006.1| - 0.1 12.6 0.1 0.24 11.5 0.0 1.7 1 1 0 1 1 1 0 Integrase core domain PHF5 PF03660.9 gi|389848771|ref|YP_006351008.1| - 2.6 8.1 6.5 5.1 7.1 4.5 1.5 1 1 0 1 1 1 0 PHF5-like protein CoA_trans PF01144.18 gi|389848774|ref|YP_006351011.1| - 8.4e-35 119.9 4.7 3.2e-32 111.4 0.2 2.8 2 1 0 2 2 2 2 Coenzyme A transferase Hydantoinase_B PF02538.9 gi|389848775|ref|YP_006351012.1| - 1.2e-92 310.8 0.0 1.4e-92 310.6 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|389848776|ref|YP_006351013.1| - 6.5e-87 291.3 3.5 2.3e-86 289.5 0.1 2.6 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|389848776|ref|YP_006351013.1| - 1.9e-48 164.3 1.0 9.9e-46 155.4 0.3 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|389848776|ref|YP_006351013.1| - 0.042 12.1 1.6 0.87 7.8 0.1 2.2 2 0 0 2 2 2 0 MutL protein FtsA PF14450.1 gi|389848776|ref|YP_006351013.1| - 0.045 13.5 0.5 1.5 8.6 0.1 2.6 2 0 0 2 2 2 0 Cell division protein FtsA SBP_bac_5 PF00496.17 gi|389848777|ref|YP_006351014.1| - 1.3e-72 244.7 8.8 1.7e-72 244.3 6.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|389848777|ref|YP_006351014.1| - 0.019 14.9 0.2 0.04 13.9 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AAA_8 PF12780.2 gi|389848777|ref|YP_006351014.1| - 0.11 11.4 0.0 0.66 8.9 0.0 2.0 1 1 0 2 2 2 0 P-loop containing dynein motor region D4 BPD_transp_1 PF00528.17 gi|389848778|ref|YP_006351015.1| - 3e-36 124.6 8.6 3e-36 124.6 6.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389848779|ref|YP_006351016.1| - 2.2e-25 89.2 7.5 2.2e-25 89.2 5.2 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389848779|ref|YP_006351016.1| - 2.5e-11 42.7 0.0 2.5e-11 42.7 0.0 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|389848780|ref|YP_006351017.1| - 7.1e-27 94.3 0.0 1e-26 93.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848780|ref|YP_006351017.1| - 5.7e-19 68.2 0.1 1.1e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389848780|ref|YP_006351017.1| - 3.6e-07 30.4 0.0 2.3e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|389848780|ref|YP_006351017.1| - 0.00023 20.4 0.0 0.0006 19.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|389848780|ref|YP_006351017.1| - 0.0028 16.7 0.3 0.0059 15.6 0.1 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|389848780|ref|YP_006351017.1| - 0.0078 16.2 0.1 0.02 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|389848780|ref|YP_006351017.1| - 0.0094 15.4 0.0 0.024 14.1 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AIG1 PF04548.11 gi|389848780|ref|YP_006351017.1| - 0.013 14.5 0.1 0.02 13.9 0.1 1.2 1 0 0 1 1 1 0 AIG1 family AAA PF00004.24 gi|389848780|ref|YP_006351017.1| - 0.027 14.6 0.1 0.064 13.4 0.0 1.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|389848780|ref|YP_006351017.1| - 0.051 13.0 0.2 0.14 11.5 0.1 1.6 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|389848780|ref|YP_006351017.1| - 0.061 12.1 0.2 0.097 11.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|389848780|ref|YP_006351017.1| - 0.062 12.4 0.0 0.19 10.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|389848780|ref|YP_006351017.1| - 0.077 12.6 0.2 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|389848780|ref|YP_006351017.1| - 0.082 13.0 0.0 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase DUF87 PF01935.12 gi|389848780|ref|YP_006351017.1| - 0.092 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|389848780|ref|YP_006351017.1| - 0.096 12.8 0.6 0.23 11.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|389848780|ref|YP_006351017.1| - 0.13 11.6 0.3 0.23 10.8 0.2 1.6 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|389848781|ref|YP_006351018.1| - 9.3e-34 116.6 0.0 1.4e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848781|ref|YP_006351018.1| - 1.2e-15 57.5 0.3 2.1e-15 56.7 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389848781|ref|YP_006351018.1| - 7.7e-12 45.7 0.0 4.8e-10 39.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389848781|ref|YP_006351018.1| - 5.7e-08 32.2 0.1 3e-07 29.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389848781|ref|YP_006351018.1| - 1.3e-05 25.3 0.3 0.00011 22.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389848781|ref|YP_006351018.1| - 0.00095 19.3 0.2 0.0095 16.1 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|389848781|ref|YP_006351018.1| - 0.0015 17.9 0.2 0.0089 15.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389848781|ref|YP_006351018.1| - 0.0018 18.3 0.8 0.0048 16.9 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|389848781|ref|YP_006351018.1| - 0.0028 18.4 0.0 0.014 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|389848781|ref|YP_006351018.1| - 0.0055 16.4 0.1 0.3 10.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|389848781|ref|YP_006351018.1| - 0.0086 15.9 0.1 0.082 12.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|389848781|ref|YP_006351018.1| - 0.018 14.2 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|389848781|ref|YP_006351018.1| - 0.019 14.4 0.1 0.064 12.7 0.1 1.8 1 1 1 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|389848781|ref|YP_006351018.1| - 0.022 14.2 0.1 0.12 11.7 0.0 1.9 1 1 0 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.20 gi|389848781|ref|YP_006351018.1| - 0.035 13.6 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|389848781|ref|YP_006351018.1| - 0.037 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389848781|ref|YP_006351018.1| - 0.054 13.1 0.2 0.099 12.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain tRNA_lig_kinase PF08303.6 gi|389848781|ref|YP_006351018.1| - 0.056 13.3 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain AAA_18 PF13238.1 gi|389848781|ref|YP_006351018.1| - 0.094 13.0 0.1 0.25 11.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|389848781|ref|YP_006351018.1| - 0.11 12.2 0.0 0.39 10.4 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|389848781|ref|YP_006351018.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|389848781|ref|YP_006351018.1| - 0.14 11.2 0.2 0.31 10.1 0.1 1.6 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.17 gi|389848781|ref|YP_006351018.1| - 0.16 10.8 0.1 0.29 9.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|389848781|ref|YP_006351018.1| - 0.16 11.5 0.3 0.34 10.4 0.2 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|389848781|ref|YP_006351018.1| - 0.17 10.8 0.0 12 4.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|389848781|ref|YP_006351018.1| - 0.37 9.1 0.5 2.3 6.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Hydantoinase_A PF01968.13 gi|389848782|ref|YP_006351019.1| - 5.6e-93 311.2 1.1 4.5e-89 298.3 0.0 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|389848782|ref|YP_006351019.1| - 4.6e-49 166.3 0.4 1.1e-48 165.0 0.3 1.7 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region Pilus_CpaD PF09476.5 gi|389848782|ref|YP_006351019.1| - 0.01 15.2 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) BcrAD_BadFG PF01869.15 gi|389848782|ref|YP_006351019.1| - 0.06 12.6 0.0 1 8.6 0.1 2.4 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|389848782|ref|YP_006351019.1| - 0.21 9.8 3.0 0.99 7.6 0.6 2.2 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.9 gi|389848783|ref|YP_006351020.1| - 2.6e-96 322.9 0.0 3.1e-96 322.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Cupin_2 PF07883.6 gi|389848784|ref|YP_006351021.1| - 2.9e-13 49.0 0.2 3.9e-13 48.6 0.2 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|389848784|ref|YP_006351021.1| - 3.4e-05 23.5 0.0 4.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain HgmA PF04209.8 gi|389848784|ref|YP_006351021.1| - 0.00021 19.8 0.0 0.00021 19.8 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase Cupin_1 PF00190.17 gi|389848784|ref|YP_006351021.1| - 0.00087 18.7 0.0 0.0014 18.0 0.0 1.4 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|389848784|ref|YP_006351021.1| - 0.0027 17.0 0.1 0.0035 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.9 gi|389848784|ref|YP_006351021.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_6 PF12852.2 gi|389848784|ref|YP_006351021.1| - 0.081 12.5 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.3 gi|389848784|ref|YP_006351021.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Chitin_bind_4 PF00379.18 gi|389848784|ref|YP_006351021.1| - 0.2 11.9 1.1 0.4 10.9 0.1 2.0 2 1 0 2 2 2 0 Insect cuticle protein HTH_AsnC-type PF13404.1 gi|389848785|ref|YP_006351022.1| - 1.6e-14 53.1 1.8 2.9e-14 52.3 1.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389848785|ref|YP_006351022.1| - 7.5e-14 50.8 1.4 1.1e-13 50.2 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|389848785|ref|YP_006351022.1| - 1.4e-09 37.4 0.1 2.6e-09 36.6 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|389848785|ref|YP_006351022.1| - 0.00076 19.0 0.1 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|389848785|ref|YP_006351022.1| - 0.0045 16.7 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389848785|ref|YP_006351022.1| - 0.0082 15.8 0.3 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389848785|ref|YP_006351022.1| - 0.012 15.2 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|389848785|ref|YP_006351022.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|389848785|ref|YP_006351022.1| - 0.037 13.7 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF603 PF04645.7 gi|389848785|ref|YP_006351022.1| - 0.041 13.8 0.1 0.073 13.0 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF603 HTH_23 PF13384.1 gi|389848785|ref|YP_006351022.1| - 0.045 13.4 0.7 0.11 12.1 0.5 1.7 1 1 0 1 1 1 0 Homeodomain-like domain Mga PF05043.8 gi|389848785|ref|YP_006351022.1| - 0.075 13.3 0.0 0.41 10.9 0.0 2.0 2 0 0 2 2 2 0 Mga helix-turn-helix domain AHSA1 PF08327.6 gi|389848786|ref|YP_006351023.1| - 5.5e-27 94.3 0.0 6.7e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.4 gi|389848786|ref|YP_006351023.1| - 8.9e-13 48.5 0.3 1.1e-12 48.3 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|389848786|ref|YP_006351023.1| - 0.0048 16.8 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|389848786|ref|YP_006351023.1| - 0.04 13.4 0.1 1.8 8.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2505) HTH_20 PF12840.2 gi|389848787|ref|YP_006351024.1| - 1.2e-18 66.6 0.2 2.2e-18 65.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389848787|ref|YP_006351024.1| - 7.3e-12 44.7 0.1 1.1e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|389848787|ref|YP_006351024.1| - 2e-06 27.3 0.2 3.5e-06 26.5 0.1 1.5 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|389848787|ref|YP_006351024.1| - 5.2e-05 22.8 0.0 9.4e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|389848787|ref|YP_006351024.1| - 0.00048 19.6 0.3 0.001 18.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389848787|ref|YP_006351024.1| - 0.00051 19.6 0.0 0.0012 18.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|389848787|ref|YP_006351024.1| - 0.0036 17.6 0.0 0.0068 16.7 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|389848787|ref|YP_006351024.1| - 0.0058 16.3 0.0 0.0081 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|389848787|ref|YP_006351024.1| - 0.0086 15.9 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|389848787|ref|YP_006351024.1| - 0.015 14.6 0.0 0.051 12.9 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|389848787|ref|YP_006351024.1| - 0.016 15.3 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.1 gi|389848787|ref|YP_006351024.1| - 0.029 13.9 0.0 0.036 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2513 PF10711.4 gi|389848787|ref|YP_006351024.1| - 0.086 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_29 PF13551.1 gi|389848787|ref|YP_006351024.1| - 0.12 12.4 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Abhydrolase_6 PF12697.2 gi|389848788|ref|YP_006351025.1| - 2.5e-30 106.0 7.3 2.8e-30 105.9 5.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848788|ref|YP_006351025.1| - 2.1e-12 47.0 0.1 2.5e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848788|ref|YP_006351025.1| - 5.1e-05 22.9 0.0 5.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|389848788|ref|YP_006351025.1| - 0.015 14.8 0.0 0.029 13.9 0.0 1.5 2 0 0 2 2 2 0 PGAP1-like protein ADH_N PF08240.7 gi|389848789|ref|YP_006351026.1| - 3.4e-23 81.4 0.6 5.1e-23 80.9 0.4 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|389848789|ref|YP_006351026.1| - 8.2e-23 80.3 0.0 1.9e-22 79.2 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|389848789|ref|YP_006351026.1| - 0.0054 17.6 0.0 0.015 16.1 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Sigma70_r1_2 PF00140.15 gi|389848789|ref|YP_006351026.1| - 0.096 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 factor, region 1.2 VanZ PF04892.7 gi|389848790|ref|YP_006351027.1| - 0.00031 20.7 0.0 0.00036 20.4 0.0 1.2 1 0 0 1 1 1 1 VanZ like family Transgly_assoc PF04226.8 gi|389848790|ref|YP_006351027.1| - 0.0075 16.3 0.8 1.1 9.3 0.0 2.4 2 0 0 2 2 2 2 Transglycosylase associated protein BRK PF07533.11 gi|389848790|ref|YP_006351027.1| - 0.068 12.6 0.2 0.23 10.9 0.1 1.8 2 0 0 2 2 2 0 BRK domain DUF2985 PF11204.3 gi|389848790|ref|YP_006351027.1| - 0.084 12.6 0.1 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2985) VanZ PF04892.7 gi|389848792|ref|YP_006351029.1| - 2.2e-09 37.3 0.0 2.3e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 VanZ like family DUF1440 PF07274.7 gi|389848792|ref|YP_006351029.1| - 0.035 14.0 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) DUF318 PF03773.8 gi|389848793|ref|YP_006351030.1| - 3e-49 167.6 7.5 4e-49 167.2 5.2 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|389848793|ref|YP_006351030.1| - 1.5e-05 24.7 0.1 2.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|389848793|ref|YP_006351030.1| - 0.0018 17.9 0.1 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|389848793|ref|YP_006351030.1| - 0.029 14.1 0.1 0.029 14.1 0.1 2.4 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HATPase_c PF02518.21 gi|389848794|ref|YP_006351031.1| - 1.2e-14 53.9 0.0 2.5e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389848794|ref|YP_006351031.1| - 0.00016 21.6 0.4 0.00042 20.2 0.3 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|389848794|ref|YP_006351031.1| - 0.00028 20.6 0.1 0.0006 19.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|389848794|ref|YP_006351031.1| - 0.00051 19.7 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain AA_permease_2 PF13520.1 gi|389848795|ref|YP_006351032.1| - 9.7e-08 30.9 8.8 2.3e-07 29.7 6.1 1.5 1 1 0 1 1 1 1 Amino acid permease UbiA PF01040.13 gi|389848795|ref|YP_006351032.1| - 1.2 8.3 10.4 0.3 10.2 5.0 1.6 1 1 0 1 1 1 0 UbiA prenyltransferase family AA_permease_2 PF13520.1 gi|389848796|ref|YP_006351033.1| - 1.3e-32 112.9 42.2 1.7e-32 112.5 29.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|389848796|ref|YP_006351033.1| - 3.1e-21 75.2 41.1 4.4e-21 74.7 28.5 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|389848796|ref|YP_006351033.1| - 5.2e-05 23.4 0.9 0.25 11.5 0.1 3.0 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|389848796|ref|YP_006351033.1| - 0.00035 20.3 4.0 0.002 17.9 2.7 2.4 1 0 0 1 1 1 1 C-terminus of AA_permease DUF1286 PF06939.6 gi|389848796|ref|YP_006351033.1| - 0.51 10.5 8.5 1.3 9.1 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1286) TrmB PF01978.14 gi|389848797|ref|YP_006351034.1| - 1.1e-06 28.2 0.2 1.4e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|389848797|ref|YP_006351034.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family adh_short PF00106.20 gi|389848798|ref|YP_006351035.1| - 2.5e-42 144.6 0.4 3.1e-42 144.3 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389848798|ref|YP_006351035.1| - 6.9e-24 84.9 0.0 8.4e-24 84.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389848798|ref|YP_006351035.1| - 1.1e-21 77.2 0.1 1.6e-21 76.7 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389848798|ref|YP_006351035.1| - 0.011 15.2 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|389848798|ref|YP_006351035.1| - 0.026 14.3 0.1 0.099 12.4 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PurA PF04845.8 gi|389848798|ref|YP_006351035.1| - 0.036 13.1 0.0 0.057 12.5 0.0 1.3 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein MaoC_dehydratas PF01575.14 gi|389848800|ref|YP_006351037.1| - 4.5e-26 90.6 0.0 7e-26 90.0 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389848800|ref|YP_006351037.1| - 2.4e-08 33.8 0.1 1.2e-07 31.5 0.1 2.1 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|389848800|ref|YP_006351037.1| - 0.003 17.6 0.1 0.0073 16.4 0.0 1.8 1 0 0 1 1 1 1 Thioesterase superfamily DUF4165 PF13752.1 gi|389848800|ref|YP_006351037.1| - 0.0072 16.0 0.1 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4165) 4HBT_2 PF13279.1 gi|389848800|ref|YP_006351037.1| - 0.0083 16.5 0.0 0.02 15.3 0.0 1.4 1 1 0 1 1 1 1 Thioesterase-like superfamily Antitoxin-MazE PF04014.13 gi|389848801|ref|YP_006351038.1| - 0.13 12.0 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE Phasin PF05597.6 gi|389848802|ref|YP_006351039.1| - 0.00068 19.4 1.0 0.0011 18.7 0.5 1.5 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Apolipoprotein PF01442.13 gi|389848802|ref|YP_006351039.1| - 0.0014 18.1 4.0 0.002 17.6 2.7 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.5 gi|389848802|ref|YP_006351039.1| - 0.0028 17.6 4.6 0.014 15.3 0.2 2.7 2 1 0 2 2 2 1 Phasin protein Carbpep_Y_N PF05388.6 gi|389848802|ref|YP_006351039.1| - 0.015 15.4 0.6 0.027 14.6 0.4 1.6 1 1 0 1 1 1 0 Carboxypeptidase Y pro-peptide ApoLp-III PF07464.6 gi|389848802|ref|YP_006351039.1| - 0.043 13.8 1.2 0.06 13.3 0.8 1.4 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Poxvirus_B22R PF04395.7 gi|389848802|ref|YP_006351039.1| - 0.08 12.4 0.2 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Poxvirus B22R protein DUF3394 PF11874.3 gi|389848802|ref|YP_006351039.1| - 0.12 11.8 1.7 0.39 10.2 0.1 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF3394) Tweety PF04906.8 gi|389848802|ref|YP_006351039.1| - 0.14 10.5 3.5 1 7.6 0.0 2.1 2 0 0 2 2 2 0 Tweety PMC2NT PF08066.7 gi|389848802|ref|YP_006351039.1| - 0.21 11.9 6.3 0.85 9.9 4.4 2.3 1 1 0 1 1 1 0 PMC2NT (NUC016) domain FTCD_C PF04961.7 gi|389848802|ref|YP_006351039.1| - 0.44 9.9 3.5 11 5.3 0.5 2.6 1 1 2 3 3 3 0 Formiminotransferase-cyclodeaminase Cor1 PF04803.7 gi|389848802|ref|YP_006351039.1| - 1.7 8.3 8.1 3.5 7.4 0.3 2.6 2 1 0 2 2 2 0 Cor1/Xlr/Xmr conserved region PHA_synth_III_E PF09712.5 gi|389848803|ref|YP_006351040.1| - 5.7e-10 39.0 4.0 1.3e-08 34.5 0.2 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|389848803|ref|YP_006351040.1| - 0.0015 18.2 4.0 0.0018 18.0 1.4 2.1 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BAR PF03114.13 gi|389848803|ref|YP_006351040.1| - 0.052 13.0 0.9 0.16 11.4 0.7 1.9 1 1 0 1 1 1 0 BAR domain Sipho_Gp157 PF05565.6 gi|389848803|ref|YP_006351040.1| - 0.068 12.7 2.7 0.16 11.5 0.2 2.0 2 0 0 2 2 2 0 Siphovirus Gp157 DUF3486 PF11985.3 gi|389848803|ref|YP_006351040.1| - 0.15 12.0 4.0 0.17 11.9 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3486) Prefoldin_3 PF13758.1 gi|389848803|ref|YP_006351040.1| - 0.63 9.8 3.4 2.8 7.7 0.4 2.7 1 1 1 2 2 2 0 Prefoldin subunit BMFP PF04380.8 gi|389848803|ref|YP_006351040.1| - 2.4 8.3 7.3 0.81 9.8 2.6 2.0 2 0 0 2 2 2 0 Membrane fusogenic activity Abhydrolase_1 PF00561.15 gi|389848804|ref|YP_006351041.1| - 6.9e-24 84.6 0.0 1.3e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|389848804|ref|YP_006351041.1| - 5.2e-14 52.6 0.0 1.8e-13 50.9 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|389848804|ref|YP_006351041.1| - 4.2e-13 49.0 0.0 7.4e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|389848804|ref|YP_006351041.1| - 3.7e-10 39.7 0.0 2.3e-09 37.1 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|389848804|ref|YP_006351041.1| - 2.7e-08 32.6 0.0 1e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) PHB_depo_C PF06850.6 gi|389848804|ref|YP_006351041.1| - 1.3e-06 27.8 0.0 2.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus HHH_5 PF14520.1 gi|389848804|ref|YP_006351041.1| - 1.6e-06 28.2 0.1 3.4e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DLH PF01738.13 gi|389848804|ref|YP_006351041.1| - 1.2e-05 24.6 0.2 0.0019 17.5 0.0 3.2 3 1 1 4 4 4 1 Dienelactone hydrolase family Cdd1 PF11731.3 gi|389848804|ref|YP_006351041.1| - 0.00049 19.9 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.1 gi|389848804|ref|YP_006351041.1| - 0.00097 19.0 0.1 0.0095 15.8 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) BAAT_C PF08840.6 gi|389848804|ref|YP_006351041.1| - 0.003 17.2 0.0 0.12 12.0 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.8 gi|389848804|ref|YP_006351041.1| - 0.023 14.1 0.0 0.54 9.6 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) HHH PF00633.18 gi|389848804|ref|YP_006351041.1| - 0.027 14.1 0.1 0.027 14.1 0.1 2.2 3 0 0 3 3 2 0 Helix-hairpin-helix motif DUF2048 PF09752.4 gi|389848804|ref|YP_006351041.1| - 0.042 12.7 0.0 0.21 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Gp-FAR-1 PF05823.7 gi|389848804|ref|YP_006351041.1| - 0.079 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Usp PF00582.21 gi|389848805|ref|YP_006351042.1| - 3.4e-31 108.2 0.0 3.8e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Abhydrolase_6 PF12697.2 gi|389848805|ref|YP_006351042.1| - 0.13 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF892 PF05974.7 gi|389848807|ref|YP_006351044.1| - 0.12 12.2 0.1 0.12 12.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) ADH_zinc_N_2 PF13602.1 gi|389848809|ref|YP_006351046.1| - 1.3e-24 87.4 0.1 3.1e-24 86.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|389848809|ref|YP_006351046.1| - 1.5e-15 56.9 0.1 5e-15 55.1 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389848809|ref|YP_006351046.1| - 1.7e-10 40.6 0.5 6.6e-10 38.7 0.1 2.2 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain Eno-Rase_NADH_b PF12242.3 gi|389848809|ref|YP_006351046.1| - 0.0025 17.5 1.0 0.0057 16.4 0.7 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|389848809|ref|YP_006351046.1| - 0.0041 16.6 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pribosyltran PF00156.22 gi|389848810|ref|YP_006351047.1| - 3.2e-25 88.2 0.2 4.6e-25 87.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|389848810|ref|YP_006351047.1| - 0.0025 17.1 0.0 0.014 14.6 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|389848810|ref|YP_006351047.1| - 0.0027 16.9 0.1 0.007 15.5 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase Prok-RING_2 PF14445.1 gi|389848811|ref|YP_006351048.1| - 0.0022 17.9 6.5 0.0025 17.7 4.5 1.0 1 0 0 1 1 1 1 Prokaryotic RING finger family 2 zf-HIT PF04438.11 gi|389848811|ref|YP_006351048.1| - 0.0053 16.3 4.3 0.0072 15.9 0.7 2.1 2 0 0 2 2 2 1 HIT zinc finger DZR PF12773.2 gi|389848811|ref|YP_006351048.1| - 0.16 11.8 10.9 4.2 7.2 0.1 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-MYND PF01753.13 gi|389848811|ref|YP_006351048.1| - 0.17 11.7 7.6 0.58 10.0 3.1 2.0 1 1 1 2 2 2 0 MYND finger zf-AN1 PF01428.11 gi|389848811|ref|YP_006351048.1| - 0.18 11.7 8.3 0.34 10.8 5.8 1.5 1 1 0 1 1 1 0 AN1-like Zinc finger zf-B_box PF00643.19 gi|389848811|ref|YP_006351048.1| - 0.19 11.6 12.1 0.075 12.9 4.7 2.0 1 1 0 2 2 2 0 B-box zinc finger zf-RING_5 PF14634.1 gi|389848811|ref|YP_006351048.1| - 0.19 11.5 9.0 0.83 9.4 2.3 2.2 2 0 0 2 2 2 0 zinc-RING finger domain DUF3795 PF12675.2 gi|389848811|ref|YP_006351048.1| - 0.24 11.6 8.5 0.25 11.5 5.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) zf-C2HC5 PF06221.8 gi|389848811|ref|YP_006351048.1| - 0.29 10.9 10.2 0.87 9.3 7.0 1.8 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Laminin_EGF PF00053.19 gi|389848811|ref|YP_006351048.1| - 1.4 8.9 11.6 16 5.5 7.1 2.1 1 1 1 2 2 2 0 Laminin EGF-like (Domains III and V) zf-dskA_traR PF01258.12 gi|389848811|ref|YP_006351048.1| - 1.4 8.7 8.5 6.1 6.6 0.1 3.1 1 1 2 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DUF4182 PF13790.1 gi|389848811|ref|YP_006351048.1| - 2 8.2 9.3 9 6.1 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4182) zf-C3HC4_3 PF13920.1 gi|389848811|ref|YP_006351048.1| - 2.7 7.7 10.3 7.6 6.3 7.1 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|389848811|ref|YP_006351048.1| - 3 7.4 11.0 2 7.9 0.3 2.4 3 0 0 3 3 2 0 zinc-ribbon domain FYVE PF01363.16 gi|389848811|ref|YP_006351048.1| - 3.9 7.4 10.3 23 4.9 7.1 2.2 1 1 0 1 1 1 0 FYVE zinc finger ADK_lid PF05191.9 gi|389848811|ref|YP_006351048.1| - 6.1 6.5 8.8 5.7 6.7 2.7 2.2 1 1 1 2 2 2 0 Adenylate kinase, active site lid PolC_DP2 PF03833.8 gi|389848811|ref|YP_006351048.1| - 6.9 4.1 5.6 6.6 4.2 3.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Usp PF00582.21 gi|389848812|ref|YP_006351049.1| - 3e-53 179.7 3.1 9.9e-26 90.6 0.3 2.1 2 0 0 2 2 2 2 Universal stress protein family CBS PF00571.23 gi|389848813|ref|YP_006351050.1| - 2.2e-23 81.7 5.1 2.6e-13 49.5 0.4 2.2 2 0 0 2 2 2 2 CBS domain MobB PF03205.9 gi|389848813|ref|YP_006351050.1| - 0.027 14.1 0.1 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B E1-E2_ATPase PF00122.15 gi|389848814|ref|YP_006351051.1| - 3.3e-56 189.9 8.8 9.3e-56 188.4 2.8 2.5 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|389848814|ref|YP_006351051.1| - 1e-44 153.5 5.8 2.1e-44 152.4 4.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389848814|ref|YP_006351051.1| - 1.1e-16 61.5 0.0 2.4e-16 60.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|389848814|ref|YP_006351051.1| - 3.6e-07 30.0 0.1 0.0022 17.6 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DS PF01916.12 gi|389848815|ref|YP_006351052.1| - 8.9e-98 327.0 0.0 1e-97 326.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Cu-oxidase_3 PF07732.10 gi|389848817|ref|YP_006351054.1| - 1e-22 80.0 0.4 5e-22 77.8 0.0 2.3 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|389848817|ref|YP_006351054.1| - 2.5e-12 46.4 5.0 3.9e-05 23.1 0.4 3.3 3 0 0 3 3 3 3 Multicopper oxidase Zip PF02535.17 gi|389848818|ref|YP_006351055.1| - 2e-09 36.8 22.7 9.3e-08 31.4 6.9 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3814 PF12769.2 gi|389848818|ref|YP_006351055.1| - 0.0026 17.8 0.8 4.2 7.6 0.0 3.4 2 1 0 3 3 3 2 Domain of unknown function (DUF3814) Borrelia_P13 PF05628.7 gi|389848818|ref|YP_006351055.1| - 0.019 14.7 14.0 0.099 12.4 0.7 3.2 2 1 2 4 4 4 0 Borrelia membrane protein P13 HlyIII PF03006.15 gi|389848818|ref|YP_006351055.1| - 0.19 11.1 6.6 0.48 9.7 4.6 1.6 1 0 0 1 1 1 0 Haemolysin-III related DUF1772 PF08592.6 gi|389848818|ref|YP_006351055.1| - 1.5 8.5 15.1 1.9 8.1 0.0 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1772) Copper-bind PF00127.15 gi|389848819|ref|YP_006351056.1| - 8.8e-13 48.3 0.0 1.2e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389848819|ref|YP_006351056.1| - 0.00038 20.2 0.1 0.0063 16.3 0.0 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain Fe_dep_repr_C PF02742.10 gi|389848820|ref|YP_006351057.1| - 1.8e-29 101.2 0.2 3.1e-29 100.4 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|389848820|ref|YP_006351057.1| - 1.1e-11 44.4 0.0 1.9e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|389848820|ref|YP_006351057.1| - 4.1e-08 32.7 0.1 8.6e-08 31.7 0.0 1.6 1 0 0 1 1 1 1 MarR family FeoA PF04023.9 gi|389848820|ref|YP_006351057.1| - 5e-08 32.7 0.1 9.5e-08 31.9 0.1 1.5 1 0 0 1 1 1 1 FeoA domain MarR PF01047.17 gi|389848820|ref|YP_006351057.1| - 4.4e-06 26.2 0.0 1.5e-05 24.6 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.1 gi|389848820|ref|YP_006351057.1| - 4e-05 22.9 0.0 6.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389848820|ref|YP_006351057.1| - 0.00011 21.7 0.0 0.00029 20.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|389848820|ref|YP_006351057.1| - 0.00034 20.6 0.0 0.00088 19.3 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|389848820|ref|YP_006351057.1| - 0.00067 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|389848820|ref|YP_006351057.1| - 0.00076 19.2 0.0 0.0017 18.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|389848820|ref|YP_006351057.1| - 0.00094 19.4 0.0 0.0021 18.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|389848820|ref|YP_006351057.1| - 0.001 18.6 1.9 0.0027 17.2 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain GntR PF00392.16 gi|389848820|ref|YP_006351057.1| - 0.0018 17.6 0.2 0.0065 15.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|389848820|ref|YP_006351057.1| - 0.0034 16.9 0.0 0.033 13.8 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|389848820|ref|YP_006351057.1| - 0.014 14.9 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_5 PF01022.15 gi|389848820|ref|YP_006351057.1| - 0.06 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|389848820|ref|YP_006351057.1| - 0.085 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Sigma70_r3 PF04539.11 gi|389848820|ref|YP_006351057.1| - 0.11 12.3 0.5 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_29 PF13551.1 gi|389848820|ref|YP_006351057.1| - 0.12 12.5 0.0 0.73 9.9 0.0 2.2 2 1 1 3 3 2 0 Winged helix-turn helix DUF914 PF06027.7 gi|389848821|ref|YP_006351058.1| - 0.35 9.6 2.5 0.42 9.4 1.8 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) ABC2_membrane_5 PF13346.1 gi|389848821|ref|YP_006351058.1| - 0.64 9.2 3.9 0.8 8.9 2.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TerC PF03741.11 gi|389848821|ref|YP_006351058.1| - 0.69 9.3 6.9 0.92 8.9 4.8 1.2 1 0 0 1 1 1 0 Integral membrane protein TerC family DUF2374 PF09574.5 gi|389848821|ref|YP_006351058.1| - 3.6 7.2 6.9 1.5 8.5 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (Duf2374) DUF2479 PF10651.4 gi|389848822|ref|YP_006351059.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2479) HTH_24 PF13412.1 gi|389848823|ref|YP_006351060.1| - 0.037 13.4 0.1 0.061 12.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389848823|ref|YP_006351060.1| - 0.041 13.5 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|389848823|ref|YP_006351060.1| - 0.1 12.2 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF11 PF01345.13 gi|389848826|ref|YP_006351063.1| - 2.8e-11 43.3 0.1 5e-05 23.2 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function DUF11 DOPA_dioxygen PF08883.6 gi|389848826|ref|YP_006351063.1| - 0.049 13.7 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family HTH_10 PF04967.7 gi|389848828|ref|YP_006351065.1| - 2.1e-19 68.8 0.1 3.7e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389848828|ref|YP_006351065.1| - 1.3e-08 33.9 5.7 8.4e-06 25.0 0.6 3.6 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|389848828|ref|YP_006351065.1| - 1.8e-05 24.3 0.1 4.9e-05 22.9 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|389848828|ref|YP_006351065.1| - 0.00026 20.4 0.2 0.00094 18.6 0.1 2.0 1 1 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|389848828|ref|YP_006351065.1| - 0.00027 20.6 0.0 0.00067 19.4 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GerE PF00196.14 gi|389848828|ref|YP_006351065.1| - 0.00065 18.9 0.9 0.01 15.1 0.6 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|389848828|ref|YP_006351065.1| - 0.0008 19.0 0.1 0.0023 17.5 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389848828|ref|YP_006351065.1| - 0.00087 18.6 0.2 0.0063 15.8 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|389848828|ref|YP_006351065.1| - 0.0013 18.2 0.2 0.005 16.3 0.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|389848828|ref|YP_006351065.1| - 0.0017 17.7 0.5 0.028 13.8 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|389848828|ref|YP_006351065.1| - 0.0021 17.8 0.5 0.033 13.9 0.1 2.7 2 1 1 3 3 3 1 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|389848828|ref|YP_006351065.1| - 0.0023 17.7 0.5 0.064 13.1 0.1 2.7 2 1 1 3 3 3 1 Sigma-70 region 3 HTH_11 PF08279.7 gi|389848828|ref|YP_006351065.1| - 0.0051 16.4 0.0 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|389848828|ref|YP_006351065.1| - 0.017 14.7 0.1 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_37 PF13744.1 gi|389848828|ref|YP_006351065.1| - 0.024 14.4 0.1 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389848828|ref|YP_006351065.1| - 0.027 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|389848828|ref|YP_006351065.1| - 0.032 13.9 0.0 0.075 12.7 0.0 1.6 1 0 0 1 1 1 0 MarR family TetR_N PF00440.18 gi|389848828|ref|YP_006351065.1| - 0.038 13.6 0.2 0.097 12.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.22 gi|389848828|ref|YP_006351065.1| - 0.073 12.8 0.1 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|389848828|ref|YP_006351065.1| - 0.084 13.0 0.1 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|389848828|ref|YP_006351065.1| - 0.12 11.9 0.2 0.69 9.4 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|389848828|ref|YP_006351065.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase LacI PF00356.16 gi|389848828|ref|YP_006351065.1| - 0.15 11.6 1.2 0.28 10.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HXXEE PF13787.1 gi|389848829|ref|YP_006351066.1| - 0.12 12.7 12.0 0.025 14.9 3.8 2.2 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif PhoD PF09423.5 gi|389848830|ref|YP_006351067.1| - 7.2e-144 479.7 1.5 8.2e-144 479.5 1.0 1.0 1 0 0 1 1 1 1 PhoD-like phosphatase TAT_signal PF10518.4 gi|389848830|ref|YP_006351067.1| - 0.77 9.9 6.0 0.38 10.8 2.4 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Baseplate_J PF04865.9 gi|389848834|ref|YP_006351071.1| - 6.5e-12 45.2 7.7 3.5e-09 36.3 3.2 3.4 3 0 0 3 3 3 3 Baseplate J-like protein VCBS PF13517.1 gi|389848834|ref|YP_006351071.1| - 0.079 13.3 11.0 1 9.7 0.1 5.1 6 0 0 6 6 6 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AAA_3 PF07726.6 gi|389848836|ref|YP_006351073.1| - 5.1e-65 216.9 0.0 8.2e-65 216.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389848836|ref|YP_006351073.1| - 7.7e-14 51.5 0.0 1.3e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|389848836|ref|YP_006351073.1| - 3.1e-06 27.4 0.0 7.8e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|389848836|ref|YP_006351073.1| - 0.00087 18.8 0.0 0.0083 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|389848836|ref|YP_006351073.1| - 0.0043 15.8 0.0 0.059 12.1 0.0 2.3 2 1 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|389848836|ref|YP_006351073.1| - 0.068 12.3 0.0 0.84 8.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.13 gi|389848838|ref|YP_006351075.1| - 5.8e-17 61.6 0.0 1.5e-16 60.2 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|389848838|ref|YP_006351075.1| - 1.4e-07 31.4 2.5 1.4e-07 31.4 1.7 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|389848838|ref|YP_006351075.1| - 0.00082 19.3 0.3 0.0021 18.0 0.2 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase MFS_1 PF07690.11 gi|389848838|ref|YP_006351075.1| - 0.0058 15.4 1.1 0.012 14.3 0.0 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF4129 PF13559.1 gi|389848839|ref|YP_006351076.1| - 6.2e-13 48.5 0.1 1.3e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) TctB PF07331.6 gi|389848839|ref|YP_006351076.1| - 0.042 13.5 0.0 0.32 10.6 0.0 2.0 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF3185 PF11381.3 gi|389848839|ref|YP_006351076.1| - 0.066 12.9 0.1 0.066 12.9 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF3742 PF12553.3 gi|389848839|ref|YP_006351076.1| - 0.31 11.5 1.2 3 8.3 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) DUF1469 PF07332.6 gi|389848839|ref|YP_006351076.1| - 0.44 10.2 3.9 1.8 8.3 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Stm1_N PF09598.5 gi|389848840|ref|YP_006351077.1| - 0.12 13.1 3.2 0.16 12.6 2.2 1.3 1 0 0 1 1 1 0 Stm1 ABC_tran PF00005.22 gi|389848841|ref|YP_006351078.1| - 6.3e-30 104.2 0.0 2e-29 102.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|389848841|ref|YP_006351078.1| - 1.2e-15 58.3 0.1 2.7e-09 37.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|389848841|ref|YP_006351078.1| - 1.9e-07 30.5 0.0 0.00071 18.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|389848841|ref|YP_006351078.1| - 4.1e-07 29.4 0.4 2e-06 27.1 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|389848841|ref|YP_006351078.1| - 0.00015 22.1 0.5 0.00027 21.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|389848841|ref|YP_006351078.1| - 0.00051 19.5 0.7 0.0039 16.6 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|389848841|ref|YP_006351078.1| - 0.0015 18.5 0.4 0.0065 16.4 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389848841|ref|YP_006351078.1| - 0.0066 16.5 0.8 0.073 13.2 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389848841|ref|YP_006351078.1| - 0.0073 15.8 0.1 0.015 14.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|389848841|ref|YP_006351078.1| - 0.012 15.5 0.0 0.7 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|389848841|ref|YP_006351078.1| - 0.015 16.1 0.1 0.047 14.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|389848841|ref|YP_006351078.1| - 0.022 14.5 0.1 0.069 12.9 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|389848841|ref|YP_006351078.1| - 0.022 13.8 0.0 0.25 10.3 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.9 gi|389848841|ref|YP_006351078.1| - 0.03 14.0 0.5 0.15 11.7 0.1 2.3 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|389848841|ref|YP_006351078.1| - 0.034 14.3 0.4 0.29 11.3 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|389848841|ref|YP_006351078.1| - 0.059 12.9 1.2 0.2 11.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|389848841|ref|YP_006351078.1| - 0.059 12.8 0.1 0.19 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain GTP_EFTU PF00009.22 gi|389848841|ref|YP_006351078.1| - 0.061 12.7 1.1 3.4 7.0 0.0 2.9 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Rad17 PF03215.10 gi|389848841|ref|YP_006351078.1| - 0.07 11.7 0.0 0.097 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|389848841|ref|YP_006351078.1| - 0.081 12.6 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|389848841|ref|YP_006351078.1| - 0.087 12.0 0.1 0.17 11.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|389848841|ref|YP_006351078.1| - 0.088 12.6 0.1 0.79 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|389848841|ref|YP_006351078.1| - 0.097 13.1 0.4 0.49 10.8 0.0 2.4 2 2 0 2 2 2 0 Miro-like protein UPF0079 PF02367.12 gi|389848841|ref|YP_006351078.1| - 0.11 12.1 0.1 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|389848841|ref|YP_006351078.1| - 3 7.7 6.1 2.5 8.0 1.0 2.9 2 2 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.2 gi|389848842|ref|YP_006351079.1| - 0.0001 21.4 25.4 0.0001 21.4 17.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848842|ref|YP_006351079.1| - 0.045 12.9 30.0 0.06 12.4 20.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389848842|ref|YP_006351079.1| - 0.47 9.2 26.8 1.6 7.4 18.6 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein Lactamase_B_5 PF14597.1 gi|389848843|ref|YP_006351080.1| - 0.1 11.9 0.1 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily WTF PF03303.8 gi|389848844|ref|YP_006351081.1| - 0.15 11.4 0.2 0.21 10.9 0.2 1.2 1 0 0 1 1 1 0 WTF protein C2-set_2 PF08205.7 gi|389848847|ref|YP_006351084.1| - 0.055 13.3 0.1 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 CD80-like C2-set immunoglobulin domain SBP_bac_5 PF00496.17 gi|389848848|ref|YP_006351085.1| - 7.2e-66 222.5 0.8 8.4e-66 222.3 0.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RNA_capsid PF03035.9 gi|389848848|ref|YP_006351085.1| - 0.082 12.6 0.2 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein BPD_transp_1 PF00528.17 gi|389848849|ref|YP_006351086.1| - 2.3e-38 131.5 11.1 2.3e-38 131.5 7.7 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3561 PF12084.3 gi|389848849|ref|YP_006351086.1| - 0.029 14.2 0.3 0.029 14.2 0.2 2.4 3 1 1 4 4 4 0 Protein of unknown function (DUF3561) BPD_transp_1 PF00528.17 gi|389848850|ref|YP_006351087.1| - 1.3e-31 109.5 10.4 1.3e-31 109.5 7.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389848850|ref|YP_006351087.1| - 1.3e-06 27.7 0.1 1.3e-06 27.7 0.1 3.1 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|389848851|ref|YP_006351088.1| - 7.8e-27 94.2 0.0 1.1e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848851|ref|YP_006351088.1| - 4.3e-18 65.4 0.5 9e-18 64.3 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389848851|ref|YP_006351088.1| - 2.6e-05 24.3 0.1 0.0022 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389848851|ref|YP_006351088.1| - 3.8e-05 23.8 0.2 0.0048 17.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389848851|ref|YP_006351088.1| - 0.0061 16.5 0.9 0.012 15.5 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389848851|ref|YP_006351088.1| - 0.015 14.8 0.1 0.029 13.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|389848851|ref|YP_006351088.1| - 0.022 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 SMC_N PF02463.14 gi|389848851|ref|YP_006351088.1| - 0.03 13.5 0.3 0.97 8.6 0.2 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|389848851|ref|YP_006351088.1| - 0.05 13.0 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|389848851|ref|YP_006351088.1| - 0.05 12.4 0.0 0.076 11.8 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|389848851|ref|YP_006351088.1| - 0.069 12.6 0.0 0.3 10.5 0.0 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|389848851|ref|YP_006351088.1| - 0.1 11.9 0.2 0.82 9.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|389848851|ref|YP_006351088.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.11 gi|389848851|ref|YP_006351088.1| - 0.16 11.0 0.2 0.74 8.8 0.1 1.9 2 0 0 2 2 2 0 AIG1 family Sigma54_activat PF00158.21 gi|389848851|ref|YP_006351088.1| - 0.18 11.2 0.0 0.43 10.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|389848852|ref|YP_006351089.1| - 1.5e-31 109.5 0.0 2.1e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848852|ref|YP_006351089.1| - 6.5e-21 74.4 2.6 1.3e-20 73.5 1.8 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389848852|ref|YP_006351089.1| - 1.1e-08 35.3 0.0 7e-06 26.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|389848852|ref|YP_006351089.1| - 4.9e-05 23.4 0.0 0.0002 21.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389848852|ref|YP_006351089.1| - 0.00015 21.8 0.3 0.00031 20.7 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|389848852|ref|YP_006351089.1| - 0.00064 18.9 0.1 0.0014 17.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|389848852|ref|YP_006351089.1| - 0.0017 17.8 0.1 0.0035 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389848852|ref|YP_006351089.1| - 0.0018 17.7 0.0 0.26 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|389848852|ref|YP_006351089.1| - 0.0089 15.9 0.2 0.035 14.0 0.2 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Sigma54_activat PF00158.21 gi|389848852|ref|YP_006351089.1| - 0.0094 15.4 0.1 0.083 12.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA PF00004.24 gi|389848852|ref|YP_006351089.1| - 0.011 15.8 0.1 0.062 13.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|389848852|ref|YP_006351089.1| - 0.011 14.8 0.0 0.063 12.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|389848852|ref|YP_006351089.1| - 0.012 15.3 0.1 0.25 11.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|389848852|ref|YP_006351089.1| - 0.016 15.5 0.0 0.037 14.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|389848852|ref|YP_006351089.1| - 0.027 13.3 0.1 0.041 12.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|389848852|ref|YP_006351089.1| - 0.031 15.0 0.0 0.079 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389848852|ref|YP_006351089.1| - 0.032 13.7 0.2 0.059 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|389848852|ref|YP_006351089.1| - 0.035 13.6 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|389848852|ref|YP_006351089.1| - 0.039 12.4 0.0 0.33 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|389848852|ref|YP_006351089.1| - 0.048 13.8 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|389848852|ref|YP_006351089.1| - 0.056 12.5 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|389848852|ref|YP_006351089.1| - 0.072 12.7 0.2 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|389848852|ref|YP_006351089.1| - 0.098 12.3 0.3 0.71 9.5 0.2 2.1 1 1 0 1 1 1 0 NTPase AAA_33 PF13671.1 gi|389848852|ref|YP_006351089.1| - 0.12 12.2 0.7 0.19 11.5 0.1 1.7 2 1 0 2 2 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|389848852|ref|YP_006351089.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF3265 PF11665.3 gi|389848852|ref|YP_006351089.1| - 0.17 11.7 0.6 0.46 10.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) ABC2_membrane_2 PF12679.2 gi|389848856|ref|YP_006351093.1| - 9e-27 93.6 12.9 8.6e-25 87.1 9.0 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848856|ref|YP_006351093.1| - 7.2e-14 51.5 22.4 6.5e-13 48.3 15.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389848856|ref|YP_006351093.1| - 2.6e-08 33.3 13.2 4.5e-08 32.5 9.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|389848856|ref|YP_006351093.1| - 3.6e-05 23.0 11.0 5.7e-05 22.3 7.6 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|389848856|ref|YP_006351093.1| - 4.8e-05 22.7 6.1 0.00013 21.3 4.2 1.7 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF106 PF01956.11 gi|389848856|ref|YP_006351093.1| - 0.18 11.3 1.2 0.34 10.4 0.9 1.4 1 0 0 1 1 1 0 Integral membrane protein DUF106 DUF3464 PF11947.3 gi|389848856|ref|YP_006351093.1| - 3 7.2 6.2 5.5 6.4 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) ABC_tran PF00005.22 gi|389848857|ref|YP_006351094.1| - 6.9e-26 91.1 0.0 9.1e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848857|ref|YP_006351094.1| - 7.5e-11 42.5 0.0 2.8e-08 34.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389848857|ref|YP_006351094.1| - 0.0087 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|389848857|ref|YP_006351094.1| - 0.014 15.3 0.0 0.032 14.1 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|389848857|ref|YP_006351094.1| - 0.036 12.8 0.0 0.062 12.0 0.0 1.4 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|389848857|ref|YP_006351094.1| - 0.044 13.2 0.0 0.069 12.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|389848857|ref|YP_006351094.1| - 0.059 12.8 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|389848857|ref|YP_006351094.1| - 0.06 13.6 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|389848857|ref|YP_006351094.1| - 0.094 11.8 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|389848857|ref|YP_006351094.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SMC_N PF02463.14 gi|389848857|ref|YP_006351094.1| - 0.11 11.6 0.0 13 4.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF1573 PF07610.6 gi|389848858|ref|YP_006351095.1| - 0.017 14.6 0.1 0.14 11.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) TAT_signal PF10518.4 gi|389848858|ref|YP_006351095.1| - 0.16 12.0 0.6 0.33 11.0 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SNF PF00209.13 gi|389848859|ref|YP_006351096.1| - 3.3e-58 197.4 32.1 1.2e-29 103.1 10.4 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family TPR_18 PF13512.1 gi|389848860|ref|YP_006351097.1| - 0.043 13.8 0.1 0.11 12.4 0.0 1.6 1 1 1 2 2 2 0 Tetratricopeptide repeat YfiO PF13525.1 gi|389848860|ref|YP_006351097.1| - 0.047 13.1 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein Ish1 PF10281.4 gi|389848860|ref|YP_006351097.1| - 0.11 12.5 0.3 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Arch_ATPase PF01637.13 gi|389848862|ref|YP_006351099.1| - 7.3e-34 117.4 0.0 1.4e-33 116.5 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|389848862|ref|YP_006351099.1| - 1.7e-17 63.4 0.0 3.6e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|389848862|ref|YP_006351099.1| - 3.5e-08 33.6 0.0 7.1e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389848862|ref|YP_006351099.1| - 6.9e-07 29.4 0.0 1.5e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|389848862|ref|YP_006351099.1| - 1.3e-05 25.1 0.0 2.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.5 gi|389848862|ref|YP_006351099.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|389848863|ref|YP_006351100.1| - 1.2e-19 69.6 0.0 1.8e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389848863|ref|YP_006351100.1| - 0.016 14.5 0.1 0.041 13.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|389848863|ref|YP_006351100.1| - 0.045 13.1 0.1 0.079 12.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.11 gi|389848863|ref|YP_006351100.1| - 0.049 13.5 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 MarR_2 PF12802.2 gi|389848863|ref|YP_006351100.1| - 0.09 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_8 PF02954.14 gi|389848863|ref|YP_006351100.1| - 0.15 11.6 0.1 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family tRNA-synt_1d PF00750.14 gi|389848864|ref|YP_006351101.1| - 0.12 11.1 0.0 0.12 11.1 0.0 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (R) HD_3 PF13023.1 gi|389848865|ref|YP_006351102.1| - 3.4e-31 108.2 1.1 4.1e-31 107.9 0.8 1.1 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|389848865|ref|YP_006351102.1| - 5.1e-10 39.4 0.1 7.2e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|389848865|ref|YP_006351102.1| - 0.002 17.4 0.1 0.0028 16.9 0.1 1.2 1 0 0 1 1 1 1 HDOD domain Spo0M PF07070.6 gi|389848866|ref|YP_006351103.1| - 6.8e-71 238.0 0.1 8.4e-71 237.7 0.0 1.1 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.17 gi|389848866|ref|YP_006351103.1| - 0.022 14.8 0.0 0.046 13.8 0.0 1.3 1 1 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain Na_H_Exchanger PF00999.16 gi|389848868|ref|YP_006351105.1| - 8.1e-35 120.0 39.5 1.1e-34 119.6 27.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|389848868|ref|YP_006351105.1| - 3.4e-28 97.9 1.2 7e-28 96.9 0.8 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|389848868|ref|YP_006351105.1| - 8e-11 41.3 0.0 3.3e-10 39.3 0.0 2.2 1 0 0 1 1 1 1 TrkA-C domain F420_oxidored PF03807.12 gi|389848868|ref|YP_006351105.1| - 3.9e-06 27.1 0.5 1.1e-05 25.7 0.3 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|389848868|ref|YP_006351105.1| - 9.9e-06 25.7 0.1 2.2e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|389848868|ref|YP_006351105.1| - 0.00022 20.9 0.0 0.00063 19.4 0.0 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|389848868|ref|YP_006351105.1| - 0.00043 20.6 0.1 0.00097 19.4 0.0 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain ApbA PF02558.11 gi|389848868|ref|YP_006351105.1| - 0.0013 18.1 0.1 0.0033 16.8 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|389848868|ref|YP_006351105.1| - 0.0018 17.6 0.1 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|389848868|ref|YP_006351105.1| - 0.0029 16.7 0.3 0.0045 16.0 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.10 gi|389848868|ref|YP_006351105.1| - 0.0035 17.1 0.1 0.0085 15.9 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|389848868|ref|YP_006351105.1| - 0.004 16.3 0.1 0.021 14.0 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|389848868|ref|YP_006351105.1| - 0.0041 17.1 0.9 0.011 15.8 0.7 1.6 1 0 0 1 1 1 1 NADH(P)-binding HI0933_like PF03486.9 gi|389848868|ref|YP_006351105.1| - 0.0042 15.6 0.0 0.0064 15.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Saccharop_dh PF03435.13 gi|389848868|ref|YP_006351105.1| - 0.007 15.3 0.2 0.013 14.4 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|389848868|ref|YP_006351105.1| - 0.013 15.8 0.1 0.04 14.3 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389848868|ref|YP_006351105.1| - 0.019 14.9 0.0 0.046 13.7 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|389848868|ref|YP_006351105.1| - 0.15 11.9 0.3 0.3 10.9 0.0 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|389848868|ref|YP_006351105.1| - 0.56 9.7 3.7 0.18 11.3 0.1 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Abhydrolase_6 PF12697.2 gi|389848869|ref|YP_006351106.1| - 7.1e-17 62.0 0.1 6.7e-08 32.6 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848869|ref|YP_006351106.1| - 2.3e-15 56.6 0.1 3.1e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389848869|ref|YP_006351106.1| - 5.8e-10 38.8 0.0 4.6e-09 35.8 0.0 1.8 1 1 1 2 2 2 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|389848869|ref|YP_006351106.1| - 9.7e-06 25.2 0.1 0.017 14.6 0.0 2.4 2 1 0 3 3 3 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|389848869|ref|YP_006351106.1| - 0.00011 22.0 0.0 0.00085 19.1 0.0 2.1 2 0 0 2 2 2 1 TAP-like protein Ser_hydrolase PF06821.8 gi|389848869|ref|YP_006351106.1| - 0.0049 16.4 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase Peptidase_S9 PF00326.16 gi|389848869|ref|YP_006351106.1| - 0.0055 15.9 0.1 0.12 11.5 0.0 2.4 2 1 0 2 2 2 1 Prolyl oligopeptidase family DUF3530 PF12048.3 gi|389848869|ref|YP_006351106.1| - 0.014 14.3 0.1 0.22 10.4 0.0 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3530) Abhydrolase_2 PF02230.11 gi|389848869|ref|YP_006351106.1| - 0.018 14.5 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|389848869|ref|YP_006351106.1| - 0.056 13.1 0.1 8 6.0 0.0 2.2 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal AP_endonuc_2 PF01261.19 gi|389848870|ref|YP_006351107.1| - 2.5e-33 115.1 0.1 3e-33 114.9 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Phosphodiest PF01663.17 gi|389848871|ref|YP_006351108.1| - 4.4e-21 75.6 0.0 1.3e-19 70.7 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|389848871|ref|YP_006351108.1| - 0.0043 16.4 0.0 0.08 12.3 0.0 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily Prenyltrans_2 PF13249.1 gi|389848872|ref|YP_006351109.1| - 1.5e-08 35.0 0.1 0.00034 20.9 0.0 2.8 2 1 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|389848872|ref|YP_006351109.1| - 1.2e-06 28.4 0.6 0.00021 21.2 0.0 3.3 1 1 2 3 3 3 2 Prenyltransferase-like Acetyltransf_6 PF13480.1 gi|389848873|ref|YP_006351110.1| - 2.5e-20 72.8 0.0 6.6e-20 71.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|389848873|ref|YP_006351110.1| - 1.3e-06 27.3 0.0 0.012 14.3 0.0 2.6 3 0 0 3 3 3 2 FemAB family Pyridox_oxidase PF01243.15 gi|389848874|ref|YP_006351111.1| - 8.1e-16 57.8 0.0 1.2e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|389848874|ref|YP_006351111.1| - 1.2e-11 44.6 0.2 1.3e-11 44.4 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase SSF PF00474.12 gi|389848875|ref|YP_006351112.1| - 5.2e-31 107.6 29.2 7.2e-31 107.2 20.3 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family SCAMP PF04144.8 gi|389848875|ref|YP_006351112.1| - 0.018 14.9 2.0 0.018 14.9 1.4 3.0 3 1 0 3 3 3 0 SCAMP family TENA_THI-4 PF03070.11 gi|389848876|ref|YP_006351113.1| - 3.1e-27 95.7 0.0 3.7e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PfkB PF00294.19 gi|389848876|ref|YP_006351113.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase TENA_THI-4 PF03070.11 gi|389848877|ref|YP_006351114.1| - 3.9e-51 173.7 0.0 4.4e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TBP PF00352.16 gi|389848878|ref|YP_006351115.1| - 3.5e-59 196.1 0.0 5.7e-29 99.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|389848878|ref|YP_006351115.1| - 7.1e-05 22.7 0.0 0.11 12.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|389848878|ref|YP_006351115.1| - 0.023 14.0 0.6 6.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1