# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|389848446|ref|YP_006350684.1| - 1.2e-12 47.3 0.0 3.1e-12 46.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|389848446|ref|YP_006350684.1| - 5.1e-11 42.8 1.5 2.8e-10 40.5 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389848446|ref|YP_006350684.1| - 1.5e-07 31.6 0.0 4.9e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|389848446|ref|YP_006350684.1| - 9.7e-07 29.0 0.0 2.8e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|389848446|ref|YP_006350684.1| - 0.0018 17.9 0.0 0.0046 16.6 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_2 PF07724.9 gi|389848446|ref|YP_006350684.1| - 0.0029 17.5 0.0 0.0058 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|389848446|ref|YP_006350684.1| - 0.0029 17.3 0.4 0.84 9.3 0.1 2.8 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|389848446|ref|YP_006350684.1| - 0.021 15.0 0.0 0.054 13.7 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF815 PF05673.8 gi|389848446|ref|YP_006350684.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2791 PF10923.3 gi|389848446|ref|YP_006350684.1| - 0.025 13.1 0.0 0.049 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) Sigma54_activat PF00158.21 gi|389848446|ref|YP_006350684.1| - 0.03 13.8 0.0 0.096 12.1 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.24 gi|389848446|ref|YP_006350684.1| - 0.11 12.0 1.0 1.8 8.0 0.7 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|389848446|ref|YP_006350684.1| - 0.62 9.6 3.1 1.3 8.5 2.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389848446|ref|YP_006350684.1| - 1.9 7.8 5.0 1.1 8.5 0.6 2.5 2 1 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|389848448|ref|YP_006350686.1| - 2.5e-18 66.1 0.0 3.4e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389848448|ref|YP_006350686.1| - 1.3e-08 34.9 0.0 2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|389848448|ref|YP_006350686.1| - 1.1e-07 31.1 0.0 1.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|389848448|ref|YP_006350686.1| - 0.0014 17.7 0.0 0.03 13.3 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|389848448|ref|YP_006350686.1| - 0.0086 15.5 0.0 0.021 14.2 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|389848448|ref|YP_006350686.1| - 0.01 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|389848448|ref|YP_006350686.1| - 0.028 13.8 0.0 0.52 9.6 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|389848448|ref|YP_006350686.1| - 0.048 13.4 0.3 0.14 11.9 0.1 1.9 2 0 0 2 2 2 0 Part of AAA domain YhjQ PF06564.7 gi|389848448|ref|YP_006350686.1| - 0.091 12.1 0.0 0.22 10.8 0.0 1.5 1 1 0 1 1 1 0 YhjQ protein zinc_ribbon_2 PF13240.1 gi|389848449|ref|YP_006350687.1| - 0.015 14.7 2.9 0.024 14.0 2.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|389848449|ref|YP_006350687.1| - 0.018 14.8 0.4 0.041 13.7 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|389848449|ref|YP_006350687.1| - 0.045 13.7 2.4 2.6 8.1 0.2 2.2 2 0 0 2 2 2 0 zinc-finger TFIIS_C PF01096.13 gi|389848449|ref|YP_006350687.1| - 0.1 12.2 2.6 1.1 8.9 1.9 2.0 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|389848449|ref|YP_006350687.1| - 0.11 12.2 0.4 0.2 11.4 0.3 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-dskA_traR PF01258.12 gi|389848449|ref|YP_006350687.1| - 0.12 12.1 0.6 0.12 12.1 0.4 1.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.1 gi|389848449|ref|YP_006350687.1| - 0.12 12.6 2.2 0.33 11.2 1.5 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|389848449|ref|YP_006350687.1| - 0.13 12.1 2.4 0.78 9.7 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|389848449|ref|YP_006350687.1| - 0.14 11.8 2.6 0.18 11.5 0.0 2.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|389848449|ref|YP_006350687.1| - 0.22 11.3 1.8 0.85 9.4 1.2 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389848449|ref|YP_006350687.1| - 0.25 10.6 3.3 1.4 8.2 2.7 1.9 1 1 1 2 2 2 0 zinc-ribbon domain HTH_10 PF04967.7 gi|389848450|ref|YP_006350688.1| - 1.3e-20 72.7 0.6 2.2e-20 71.9 0.4 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|389848450|ref|YP_006350688.1| - 0.033 13.7 0.0 0.077 12.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0122 PF04297.9 gi|389848450|ref|YP_006350688.1| - 0.039 13.9 0.1 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.1 gi|389848450|ref|YP_006350688.1| - 0.04 13.2 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HrpJ PF07201.6 gi|389848450|ref|YP_006350688.1| - 0.39 10.7 5.7 0.21 11.5 1.0 2.0 1 1 1 2 2 2 0 HrpJ-like domain Lactamase_B PF00753.22 gi|389848451|ref|YP_006350689.1| - 1e-22 80.7 6.5 1.8e-22 79.9 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|389848451|ref|YP_006350689.1| - 2.2e-14 53.7 0.0 1.2e-13 51.3 0.0 2.1 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|389848451|ref|YP_006350689.1| - 0.00056 19.4 0.4 0.00088 18.8 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.11 gi|389848452|ref|YP_006350690.1| - 5.5e-37 127.2 39.3 1.1e-18 67.0 13.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1748 PF08520.5 gi|389848453|ref|YP_006350691.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1748) adh_short PF00106.20 gi|389848454|ref|YP_006350692.1| - 6.4e-39 133.5 0.7 9.2e-39 133.0 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389848454|ref|YP_006350692.1| - 4.5e-30 105.1 0.0 5.5e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389848454|ref|YP_006350692.1| - 1.5e-15 57.3 0.4 2.1e-15 56.8 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389848454|ref|YP_006350692.1| - 2.7e-05 23.7 0.1 4e-05 23.1 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389848454|ref|YP_006350692.1| - 0.0067 16.4 1.2 0.011 15.7 0.8 1.6 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|389848454|ref|YP_006350692.1| - 0.0085 15.1 0.0 0.014 14.4 0.0 1.6 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|389848454|ref|YP_006350692.1| - 0.0091 14.7 0.4 0.012 14.2 0.3 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Saccharop_dh PF03435.13 gi|389848454|ref|YP_006350692.1| - 0.018 14.0 0.6 0.036 13.0 0.1 1.6 1 1 1 2 2 2 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|389848454|ref|YP_006350692.1| - 0.023 15.0 0.0 0.05 14.0 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.12 gi|389848454|ref|YP_006350692.1| - 0.041 12.7 0.1 0.089 11.6 0.0 1.6 1 1 0 1 1 1 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|389848454|ref|YP_006350692.1| - 0.065 13.0 0.1 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HHH_5 PF14520.1 gi|389848454|ref|YP_006350692.1| - 0.073 13.2 0.3 0.24 11.5 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain 3HCDH_N PF02737.13 gi|389848454|ref|YP_006350692.1| - 0.078 12.6 0.2 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HAD_2 PF13419.1 gi|389848456|ref|YP_006350694.1| - 2.8e-26 92.7 0.1 3.9e-26 92.3 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389848456|ref|YP_006350694.1| - 1.1e-11 44.3 0.6 2.2e-11 43.2 0.4 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|389848456|ref|YP_006350694.1| - 3.9e-09 37.2 0.0 8.3e-09 36.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.19 gi|389848457|ref|YP_006350695.1| - 6.1e-40 136.7 3.8 8.5e-40 136.3 2.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389848457|ref|YP_006350695.1| - 7.2e-19 67.0 0.1 1.9e-18 65.6 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|389848457|ref|YP_006350695.1| - 4.7e-17 62.5 0.0 1.1e-16 61.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|389848457|ref|YP_006350695.1| - 2.7e-15 56.8 6.0 2.7e-15 56.8 4.1 1.8 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|389848457|ref|YP_006350695.1| - 0.0048 16.3 0.0 0.0094 15.3 0.0 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal APH PF01636.18 gi|389848459|ref|YP_006350697.1| - 8.1e-45 153.4 7.5 1.1e-44 152.9 5.2 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|389848459|ref|YP_006350697.1| - 0.0003 20.0 0.0 0.00049 19.3 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|389848459|ref|YP_006350697.1| - 0.022 13.3 0.0 0.031 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Choline_kinase PF01633.15 gi|389848459|ref|YP_006350697.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase 3HCDH_N PF02737.13 gi|389848460|ref|YP_006350698.1| - 6.6e-61 205.1 0.0 1.1e-60 204.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|389848460|ref|YP_006350698.1| - 4.1e-56 189.8 0.0 5.8e-56 189.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|389848460|ref|YP_006350698.1| - 2.4e-44 149.6 0.3 1.9e-22 79.4 0.0 3.2 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_C PF13766.1 gi|389848460|ref|YP_006350698.1| - 0.00059 19.9 0.0 0.0016 18.5 0.0 1.7 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_Gly3P_dh_N PF01210.18 gi|389848460|ref|YP_006350698.1| - 0.0037 17.0 0.0 0.0062 16.2 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|389848460|ref|YP_006350698.1| - 0.0066 16.3 0.1 0.015 15.1 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|389848460|ref|YP_006350698.1| - 0.048 14.0 0.2 0.18 12.2 0.2 2.1 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pup PF05639.6 gi|389848460|ref|YP_006350698.1| - 5.1 7.6 11.9 3.3 8.2 1.9 3.3 3 0 0 3 3 3 0 Pup-like protein HTH_32 PF13565.1 gi|389848461|ref|YP_006350699.1| - 6.4e-06 26.8 0.2 0.00017 22.3 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|389848461|ref|YP_006350699.1| - 8.6e-05 22.5 0.1 0.00023 21.1 0.0 1.7 2 0 0 2 2 2 1 Transposase HTH_24 PF13412.1 gi|389848461|ref|YP_006350699.1| - 0.00064 19.0 0.3 0.0024 17.2 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding SurA_N_3 PF13624.1 gi|389848461|ref|YP_006350699.1| - 0.1 12.5 0.1 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 SurA N-terminal domain HTH_AsnC-type PF13404.1 gi|389848461|ref|YP_006350699.1| - 0.21 11.1 0.6 0.4 10.2 0.4 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Acyl-CoA_dh_1 PF00441.19 gi|389848462|ref|YP_006350700.1| - 6.6e-55 185.3 2.6 1e-54 184.7 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389848462|ref|YP_006350700.1| - 3.9e-30 104.7 0.5 3.9e-30 104.7 0.4 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|389848462|ref|YP_006350700.1| - 1.5e-27 96.5 9.2 2.3e-27 95.8 6.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389848462|ref|YP_006350700.1| - 1.2e-21 75.9 0.5 2.4e-21 74.9 0.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|389848462|ref|YP_006350700.1| - 0.00068 19.1 4.4 0.0012 18.2 0.9 2.6 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|389848462|ref|YP_006350700.1| - 0.012 14.4 0.1 0.022 13.5 0.1 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal AMP-binding PF00501.23 gi|389848464|ref|YP_006350702.1| - 2.8e-107 358.6 0.0 3.3e-107 358.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389848464|ref|YP_006350702.1| - 1.3e-20 74.0 0.6 2.9e-20 72.9 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SCP2 PF02036.12 gi|389848465|ref|YP_006350703.1| - 7.4e-09 35.8 0.0 8.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.11 gi|389848465|ref|YP_006350703.1| - 0.56 10.5 5.8 2.8 8.2 0.3 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_N PF08240.7 gi|389848466|ref|YP_006350704.1| - 6.1e-27 93.5 0.1 1.8e-26 91.9 0.0 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|389848466|ref|YP_006350704.1| - 2.8e-25 88.3 0.0 4.1e-25 87.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|389848466|ref|YP_006350704.1| - 0.0015 18.0 0.1 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_11 PF08241.7 gi|389848466|ref|YP_006350704.1| - 0.0055 17.1 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UDPG_MGDP_dh_N PF03721.9 gi|389848466|ref|YP_006350704.1| - 0.019 14.3 0.3 1.4 8.2 0.1 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|389848466|ref|YP_006350704.1| - 0.045 13.7 0.2 0.071 13.1 0.1 1.3 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|389848466|ref|YP_006350704.1| - 0.081 12.0 0.1 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|389848466|ref|YP_006350704.1| - 0.083 12.4 0.2 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_18 PF12847.2 gi|389848466|ref|YP_006350704.1| - 0.12 12.9 0.0 0.32 11.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.17 gi|389848467|ref|YP_006350705.1| - 5.6e-159 529.3 0.1 6.4e-159 529.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|389848467|ref|YP_006350705.1| - 0.0018 17.5 0.0 0.087 12.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) MFS_1 PF07690.11 gi|389848468|ref|YP_006350706.1| - 2e-36 125.4 47.7 2.7e-24 85.5 17.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|389848468|ref|YP_006350706.1| - 2e-08 33.2 9.9 2e-08 33.2 6.9 2.1 2 0 0 2 2 2 1 Sugar (and other) transporter OATP PF03137.15 gi|389848468|ref|YP_006350706.1| - 0.15 10.0 1.4 2.2 6.2 0.3 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF202 PF02656.10 gi|389848468|ref|YP_006350706.1| - 2.2 8.5 0.0 2.2 8.5 0.0 4.4 3 2 0 3 3 3 0 Domain of unknown function (DUF202) MFS_Mycoplasma PF07672.8 gi|389848468|ref|YP_006350706.1| - 2.9 6.9 9.2 0.1 11.7 0.9 2.4 3 0 0 3 3 3 0 Mycoplasma MFS transporter Alkyl_sulf_dimr PF14863.1 gi|389848469|ref|YP_006350707.1| - 4.7e-29 101.4 0.1 8.1e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.22 gi|389848469|ref|YP_006350707.1| - 1.9e-19 70.1 2.1 3.6e-19 69.1 1.5 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389848469|ref|YP_006350707.1| - 1.3e-06 28.1 0.8 2e-06 27.4 0.5 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Alkyl_sulf_dimr PF14863.1 gi|389848470|ref|YP_006350708.1| - 1.2e-09 38.5 0.3 1.3e-09 38.4 0.2 1.0 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation TPR_15 PF13429.1 gi|389848470|ref|YP_006350708.1| - 0.088 11.8 0.1 0.092 11.7 0.1 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat DdrB PF12747.2 gi|389848470|ref|YP_006350708.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 DdrB-like protein HTH_10 PF04967.7 gi|389848471|ref|YP_006350709.1| - 1.7e-15 56.3 0.1 3.1e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389848471|ref|YP_006350709.1| - 2.5e-05 23.5 0.3 4.5e-05 22.6 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.1 gi|389848471|ref|YP_006350709.1| - 0.0041 16.6 0.0 0.009 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.7 gi|389848471|ref|YP_006350709.1| - 0.0047 16.3 0.9 0.084 12.3 0.2 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 SgrR_N PF12793.2 gi|389848471|ref|YP_006350709.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF4373 PF14297.1 gi|389848471|ref|YP_006350709.1| - 0.02 15.1 0.0 0.049 13.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4373) GerE PF00196.14 gi|389848471|ref|YP_006350709.1| - 0.02 14.1 0.2 6.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|389848471|ref|YP_006350709.1| - 0.025 14.2 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.22 gi|389848471|ref|YP_006350709.1| - 0.048 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Homeobox PF00046.24 gi|389848471|ref|YP_006350709.1| - 0.061 12.9 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Homeobox domain Vac_Fusion PF02346.11 gi|389848471|ref|YP_006350709.1| - 0.076 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Chordopoxvirus fusion protein HTH_Mga PF08280.6 gi|389848471|ref|YP_006350709.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain UpxZ PF06603.6 gi|389848472|ref|YP_006350710.1| - 0.0018 18.2 0.2 0.0037 17.2 0.1 1.6 1 1 1 2 2 2 1 UpxZ family of transcription anti-terminator antagonists DUF1340 PF07067.6 gi|389848472|ref|YP_006350710.1| - 0.041 13.0 0.6 0.047 12.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1340) CorA PF01544.13 gi|389848472|ref|YP_006350710.1| - 0.18 10.8 1.3 0.2 10.6 0.9 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF445 PF04286.7 gi|389848472|ref|YP_006350710.1| - 0.18 11.2 2.8 0.2 11.1 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF445) EHN PF06441.7 gi|389848472|ref|YP_006350710.1| - 0.37 10.7 2.3 0.49 10.3 1.4 1.3 1 1 0 1 1 1 0 Epoxide hydrolase N terminus DUF2762 PF10960.3 gi|389848472|ref|YP_006350710.1| - 0.95 9.2 4.8 1.1 8.9 2.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2762) DDE_Tnp_IS240 PF13610.1 gi|389848473|ref|YP_006350711.1| - 4.4e-06 26.7 0.0 4.4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain YicC_N PF03755.8 gi|389848476|ref|YP_006350714.1| - 0.053 13.4 0.1 0.075 12.9 0.1 1.3 1 1 0 1 1 1 0 YicC-like family, N-terminal region FTCD_C PF04961.7 gi|389848476|ref|YP_006350714.1| - 0.087 12.2 0.3 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 Formiminotransferase-cyclodeaminase Uds1 PF15456.1 gi|389848476|ref|YP_006350714.1| - 0.11 12.4 1.0 0.23 11.4 0.7 1.8 1 1 0 1 1 1 0 Up-regulated During Septation TBPIP PF07106.8 gi|389848476|ref|YP_006350714.1| - 0.23 10.9 4.5 0.44 10.0 0.2 2.4 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NYD-SP28 PF14772.1 gi|389848476|ref|YP_006350714.1| - 1.2 9.3 6.5 0.19 11.8 0.2 2.4 3 0 0 3 3 3 0 Sperm tail RHH_1 PF01402.16 gi|389848477|ref|YP_006350715.1| - 0.029 14.2 0.2 2.2 8.3 0.0 2.3 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family GIDE PF12483.3 gi|389848479|ref|YP_006350717.1| - 2.8e-05 23.5 0.1 9.6e-05 21.7 0.0 1.8 2 0 0 2 2 2 1 E3 Ubiquitin ligase Mor PF08765.6 gi|389848483|ref|YP_006350721.1| - 0.072 12.8 0.0 0.11 12.2 0.0 1.7 1 1 0 1 1 1 0 Mor transcription activator family RHH_1 PF01402.16 gi|389848483|ref|YP_006350721.1| - 0.13 12.1 0.7 1 9.3 0.0 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DMAP_binding PF06464.6 gi|389848483|ref|YP_006350721.1| - 0.17 12.5 3.1 0.22 12.1 0.0 2.2 2 1 1 3 3 3 0 DMAP1-binding Domain CytB6-F_Fe-S PF08802.5 gi|389848484|ref|YP_006350722.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit HTH_20 PF12840.2 gi|389848485|ref|YP_006350723.1| - 1.8e-06 27.6 0.4 3.1e-06 26.8 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|389848485|ref|YP_006350723.1| - 7.7e-06 25.5 0.1 1.1e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|389848485|ref|YP_006350723.1| - 9.2e-05 22.0 0.2 0.00016 21.2 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389848485|ref|YP_006350723.1| - 0.00028 21.1 0.1 0.00049 20.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|389848485|ref|YP_006350723.1| - 0.0043 16.7 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|389848485|ref|YP_006350723.1| - 0.0057 16.2 0.0 0.0085 15.6 0.0 1.3 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|389848485|ref|YP_006350723.1| - 0.023 14.6 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|389848485|ref|YP_006350723.1| - 0.025 13.9 0.7 0.035 13.4 0.5 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389848485|ref|YP_006350723.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DDE_Tnp_IS240 PF13610.1 gi|389848486|ref|YP_006350724.1| - 2.8e-18 66.2 0.0 4.3e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|389848486|ref|YP_006350724.1| - 0.0027 16.9 0.0 0.0039 16.4 0.0 1.2 1 0 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|389848486|ref|YP_006350724.1| - 0.018 15.1 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain rve_3 PF13683.1 gi|389848487|ref|YP_006350725.1| - 7e-10 38.2 0.0 7.8e-10 38.1 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|389848487|ref|YP_006350725.1| - 0.0066 16.2 0.1 0.1 12.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2384) SBP_bac_5 PF00496.17 gi|389848489|ref|YP_006350727.1| - 1.4e-72 244.6 5.2 1.7e-72 244.2 3.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|389848489|ref|YP_006350727.1| - 0.0068 16.3 0.8 0.015 15.2 0.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pox_C7_F8A PF03287.9 gi|389848489|ref|YP_006350727.1| - 0.093 12.4 0.1 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Poxvirus C7/F8A protein BPD_transp_1 PF00528.17 gi|389848490|ref|YP_006350728.1| - 8.7e-37 126.4 12.0 8.7e-37 126.4 8.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PDGLE PF13190.1 gi|389848490|ref|YP_006350728.1| - 0.015 14.9 1.4 0.48 10.1 0.0 2.9 2 1 0 2 2 2 0 PDGLE domain BPD_transp_1 PF00528.17 gi|389848491|ref|YP_006350729.1| - 4.6e-26 91.4 11.9 6.1e-26 91.0 6.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389848491|ref|YP_006350729.1| - 4.4e-17 61.1 1.5 6.3e-17 60.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Vma12 PF11712.3 gi|389848491|ref|YP_006350729.1| - 0.77 9.4 3.0 4.1 7.0 2.1 2.1 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ABC_tran PF00005.22 gi|389848492|ref|YP_006350730.1| - 1.8e-27 96.2 0.0 2.6e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848492|ref|YP_006350730.1| - 2.7e-22 78.8 0.5 5e-22 78.0 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|389848492|ref|YP_006350730.1| - 1.4e-06 28.5 0.5 0.05 13.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.1 gi|389848492|ref|YP_006350730.1| - 1.9e-06 28.0 0.7 0.00024 21.1 0.5 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|389848492|ref|YP_006350730.1| - 0.00054 19.2 0.8 0.011 14.9 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|389848492|ref|YP_006350730.1| - 0.0013 18.1 0.2 0.19 11.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|389848492|ref|YP_006350730.1| - 0.006 16.2 0.1 0.59 9.8 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_10 PF12846.2 gi|389848492|ref|YP_006350730.1| - 0.0069 15.8 0.3 0.13 11.6 0.2 2.2 1 1 1 2 2 2 1 AAA-like domain ATP-synt_ab PF00006.20 gi|389848492|ref|YP_006350730.1| - 0.0092 15.4 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|389848492|ref|YP_006350730.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|389848492|ref|YP_006350730.1| - 0.012 15.6 1.9 0.019 14.9 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|389848492|ref|YP_006350730.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|389848492|ref|YP_006350730.1| - 0.02 14.5 0.0 0.22 11.1 0.0 2.2 2 0 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|389848492|ref|YP_006350730.1| - 0.021 13.7 0.0 0.036 12.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|389848492|ref|YP_006350730.1| - 0.023 15.0 0.0 0.028 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|389848492|ref|YP_006350730.1| - 0.023 14.4 0.1 0.5 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|389848492|ref|YP_006350730.1| - 0.034 14.3 0.3 0.27 11.4 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|389848492|ref|YP_006350730.1| - 0.087 11.6 0.1 0.16 10.7 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|389848492|ref|YP_006350730.1| - 0.12 12.5 0.0 0.37 10.9 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.1 gi|389848492|ref|YP_006350730.1| - 0.13 12.2 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|389848492|ref|YP_006350730.1| - 0.15 11.0 0.2 1.7 7.6 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|389848493|ref|YP_006350731.1| - 2.1e-36 125.2 0.0 3e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389848493|ref|YP_006350731.1| - 1.1e-18 67.3 2.2 1.8e-18 66.6 1.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389848493|ref|YP_006350731.1| - 2.7e-11 43.9 2.3 6.6e-08 32.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389848493|ref|YP_006350731.1| - 4e-07 29.4 0.0 6.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389848493|ref|YP_006350731.1| - 0.00012 21.5 0.5 0.00022 20.6 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|389848493|ref|YP_006350731.1| - 0.00087 18.8 0.0 0.0026 17.2 0.0 1.7 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|389848493|ref|YP_006350731.1| - 0.0019 18.3 1.1 0.014 15.5 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389848493|ref|YP_006350731.1| - 0.0036 17.5 0.0 0.085 13.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|389848493|ref|YP_006350731.1| - 0.0037 16.7 0.0 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|389848493|ref|YP_006350731.1| - 0.0038 16.7 0.1 0.0088 15.5 0.1 1.5 1 1 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|389848493|ref|YP_006350731.1| - 0.0049 16.8 3.1 0.02 14.9 2.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|389848493|ref|YP_006350731.1| - 0.0065 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|389848493|ref|YP_006350731.1| - 0.015 14.3 0.0 1.1 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|389848493|ref|YP_006350731.1| - 0.023 14.3 0.4 0.16 11.6 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|389848493|ref|YP_006350731.1| - 0.028 14.3 0.3 0.36 10.7 0.1 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit DUF3645 PF12359.3 gi|389848493|ref|YP_006350731.1| - 0.033 13.3 0.1 0.085 11.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) AAA_33 PF13671.1 gi|389848493|ref|YP_006350731.1| - 0.036 13.9 0.5 0.12 12.2 0.3 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|389848493|ref|YP_006350731.1| - 0.036 13.1 0.1 0.076 12.0 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|389848493|ref|YP_006350731.1| - 0.057 12.8 0.6 0.4 10.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_ATPase PF09818.4 gi|389848493|ref|YP_006350731.1| - 0.1 11.1 0.1 0.23 9.9 0.0 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|389848493|ref|YP_006350731.1| - 0.12 11.4 0.0 0.32 10.1 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.12 gi|389848493|ref|YP_006350731.1| - 0.15 11.8 0.8 0.31 10.8 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 IstB_IS21 PF01695.12 gi|389848493|ref|YP_006350731.1| - 0.16 11.4 0.0 0.35 10.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein G-alpha PF00503.15 gi|389848493|ref|YP_006350731.1| - 0.16 10.6 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.7 gi|389848493|ref|YP_006350731.1| - 0.17 11.5 0.5 0.33 10.5 0.3 1.4 1 0 0 1 1 1 0 NACHT domain DUF917 PF06032.7 gi|389848494|ref|YP_006350732.1| - 1.5e-135 451.3 1.0 1.6e-135 451.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Hydantoinase_A PF01968.13 gi|389848495|ref|YP_006350733.1| - 2.1e-60 204.2 19.0 9.9e-60 202.0 7.7 2.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|389848495|ref|YP_006350733.1| - 1.5e-41 141.8 5.8 4.4e-39 133.7 0.4 2.6 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|389848495|ref|YP_006350733.1| - 9.3e-09 34.1 3.8 0.0003 19.2 0.0 3.1 3 0 0 3 3 3 2 MutL protein BcrAD_BadFG PF01869.15 gi|389848495|ref|YP_006350733.1| - 2.9e-06 26.8 2.3 5e-05 22.7 0.7 2.5 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|389848495|ref|YP_006350733.1| - 0.00012 21.1 3.3 0.0089 15.0 0.0 2.6 3 0 0 3 3 3 2 StbA protein FtsA PF14450.1 gi|389848495|ref|YP_006350733.1| - 0.12 12.1 8.3 4.4 7.1 0.2 3.9 4 0 0 4 4 4 0 Cell division protein FtsA DUF917 PF06032.7 gi|389848496|ref|YP_006350734.1| - 1.2e-126 422.0 0.1 1.3e-126 421.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) DUF917 PF06032.7 gi|389848497|ref|YP_006350735.1| - 2.1e-122 408.0 0.0 2.4e-122 407.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) HTH_AsnC-type PF13404.1 gi|389848498|ref|YP_006350736.1| - 2.4e-14 52.5 0.6 4.1e-14 51.8 0.5 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389848498|ref|YP_006350736.1| - 7.8e-13 47.5 0.7 1.1e-12 47.1 0.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389848498|ref|YP_006350736.1| - 7.9e-05 22.2 0.2 0.00015 21.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain DUF603 PF04645.7 gi|389848498|ref|YP_006350736.1| - 0.0023 17.9 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF603 HTH_20 PF12840.2 gi|389848498|ref|YP_006350736.1| - 0.0033 17.2 0.5 0.012 15.4 0.1 1.9 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389848498|ref|YP_006350736.1| - 0.0033 16.9 0.1 0.0077 15.7 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|389848498|ref|YP_006350736.1| - 0.0039 16.6 0.1 0.0088 15.5 0.0 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|389848498|ref|YP_006350736.1| - 0.012 15.1 0.1 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|389848498|ref|YP_006350736.1| - 0.016 14.9 0.2 0.046 13.4 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389848498|ref|YP_006350736.1| - 0.019 14.6 0.2 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|389848498|ref|YP_006350736.1| - 0.029 14.0 0.0 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.7 gi|389848498|ref|YP_006350736.1| - 0.036 13.5 0.1 0.08 12.4 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|389848498|ref|YP_006350736.1| - 0.045 13.7 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|389848498|ref|YP_006350736.1| - 0.049 13.4 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r3 PF04539.11 gi|389848498|ref|YP_006350736.1| - 0.096 12.5 0.9 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_8 PF02954.14 gi|389848498|ref|YP_006350736.1| - 0.13 11.8 0.3 0.24 10.9 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.7 gi|389848499|ref|YP_006350737.1| - 7.8e-17 60.6 1.1 1.1e-16 60.1 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389848499|ref|YP_006350737.1| - 0.00023 20.5 0.5 0.18 11.3 0.1 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389848499|ref|YP_006350737.1| - 0.0007 18.8 0.3 0.0013 17.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|389848499|ref|YP_006350737.1| - 0.0037 16.5 0.7 1.3 8.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|389848499|ref|YP_006350737.1| - 0.0069 16.0 0.0 0.019 14.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|389848499|ref|YP_006350737.1| - 0.0073 15.6 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|389848499|ref|YP_006350737.1| - 0.014 14.9 0.1 0.047 13.2 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Lon_C PF05362.8 gi|389848499|ref|YP_006350737.1| - 0.07 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain HTH_38 PF13936.1 gi|389848499|ref|YP_006350737.1| - 0.086 12.4 0.2 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|389848499|ref|YP_006350737.1| - 0.086 12.7 0.3 0.41 10.5 0.1 2.3 2 1 0 2 2 2 0 Sigma-70 region 3 Glyco_transf_21 PF13506.1 gi|389848500|ref|YP_006350738.1| - 1.9e-10 40.2 0.0 3.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|389848500|ref|YP_006350738.1| - 3e-07 30.2 0.0 4.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389848500|ref|YP_006350738.1| - 0.0021 17.9 0.0 0.003 17.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|389848500|ref|YP_006350738.1| - 0.0031 17.2 3.8 0.0086 15.8 2.6 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Abhydrolase_6 PF12697.2 gi|389848502|ref|YP_006350740.1| - 1.5e-31 110.0 0.0 2.3e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848502|ref|YP_006350740.1| - 8e-17 61.5 0.1 2e-15 56.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389848502|ref|YP_006350740.1| - 3.5e-13 49.5 0.0 8.7e-13 48.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|389848502|ref|YP_006350740.1| - 2e-05 24.3 0.0 7.1e-05 22.5 0.0 2.0 1 1 0 1 1 1 1 Putative lysophospholipase Peptidase_S28 PF05577.7 gi|389848502|ref|YP_006350740.1| - 0.0018 16.9 0.0 0.003 16.1 0.0 1.3 1 0 0 1 1 1 1 Serine carboxypeptidase S28 PGAP1 PF07819.8 gi|389848502|ref|YP_006350740.1| - 0.0054 16.3 0.1 0.017 14.7 0.0 1.9 1 1 0 1 1 1 1 PGAP1-like protein Ser_hydrolase PF06821.8 gi|389848502|ref|YP_006350740.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase DUF1749 PF08538.5 gi|389848502|ref|YP_006350740.1| - 0.043 12.7 0.0 0.25 10.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Peptidase_S9 PF00326.16 gi|389848502|ref|YP_006350740.1| - 0.085 12.0 0.0 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 Prolyl oligopeptidase family TAT_signal PF10518.4 gi|389848502|ref|YP_006350740.1| - 0.11 12.5 0.6 0.21 11.6 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Esterase PF00756.15 gi|389848502|ref|YP_006350740.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Glyco_hydro_31 PF01055.21 gi|389848503|ref|YP_006350741.1| - 4.2e-147 490.5 4.3 6e-147 490.0 3.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|389848503|ref|YP_006350741.1| - 3.4e-19 68.4 2.8 1.3e-18 66.5 1.9 2.2 1 0 0 1 1 1 1 Galactose mutarotase-like TAT_signal PF10518.4 gi|389848503|ref|YP_006350741.1| - 0.1 12.6 3.3 0.19 11.8 2.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ATC_hydrolase PF14196.1 gi|389848504|ref|YP_006350742.1| - 8.1e-11 42.5 0.2 1e-10 42.2 0.2 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase PsiB PF06290.6 gi|389848504|ref|YP_006350742.1| - 0.078 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Plasmid SOS inhibition protein (PsiB) DUF3566 PF12089.3 gi|389848505|ref|YP_006350743.1| - 0.8 9.7 5.7 1.4 8.9 0.0 2.3 2 1 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) DUF3185 PF11381.3 gi|389848505|ref|YP_006350743.1| - 1.4 8.7 6.6 2.5 7.9 0.6 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3185) HTH_10 PF04967.7 gi|389848506|ref|YP_006350744.1| - 2.5e-13 49.3 0.1 4.4e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|389848506|ref|YP_006350744.1| - 0.0004 19.7 0.1 0.00071 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|389848506|ref|YP_006350744.1| - 0.009 15.3 0.1 0.024 13.9 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|389848506|ref|YP_006350744.1| - 0.011 15.1 0.1 0.023 14.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|389848506|ref|YP_006350744.1| - 0.019 14.4 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|389848506|ref|YP_006350744.1| - 0.021 14.2 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.2 gi|389848506|ref|YP_006350744.1| - 0.039 13.6 0.0 0.1 12.3 0.0 1.7 1 1 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|389848506|ref|YP_006350744.1| - 0.044 13.3 0.1 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|389848506|ref|YP_006350744.1| - 0.094 13.0 0.1 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DZR PF12773.2 gi|389848507|ref|YP_006350745.1| - 0.048 13.4 0.5 0.061 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon PadR PF03551.9 gi|389848508|ref|YP_006350746.1| - 4.3e-16 58.4 0.5 5.1e-16 58.1 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389848508|ref|YP_006350746.1| - 7.9e-06 26.1 0.0 9.5e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389848508|ref|YP_006350746.1| - 0.00027 20.6 0.1 0.00038 20.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|389848508|ref|YP_006350746.1| - 0.0019 18.2 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|389848508|ref|YP_006350746.1| - 0.0064 16.1 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) TFIIB PF00382.14 gi|389848509|ref|YP_006350747.1| - 1.8e-22 78.9 1.5 7.4e-12 44.9 0.2 2.1 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.14 gi|389848509|ref|YP_006350747.1| - 0.0034 17.3 0.4 0.5 10.3 0.0 2.1 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_24 PF13412.1 gi|389848509|ref|YP_006350747.1| - 0.12 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_31 PF13560.1 gi|389848509|ref|YP_006350747.1| - 3.3 7.9 10.4 29 4.9 0.9 3.7 1 1 1 2 2 2 0 Helix-turn-helix domain BNR_2 PF13088.1 gi|389848511|ref|YP_006350749.1| - 1.3e-09 37.7 2.1 8e-05 22.0 0.5 2.5 1 1 2 3 3 3 2 BNR repeat-like domain PSII_BNR PF14870.1 gi|389848511|ref|YP_006350749.1| - 4.3e-06 25.9 0.9 1.9 7.3 0.0 4.2 1 1 2 4 4 4 3 Photosynthesis system II assembly factor YCF48 BNR PF02012.15 gi|389848511|ref|YP_006350749.1| - 8.1e-06 24.9 24.6 0.057 13.2 0.1 6.0 7 0 0 7 7 7 4 BNR/Asp-box repeat PQQ_3 PF13570.1 gi|389848511|ref|YP_006350749.1| - 8.3e-05 22.7 0.3 1.4 9.3 0.0 3.7 3 1 0 3 3 3 2 PQQ-like domain DUF4185 PF13810.1 gi|389848511|ref|YP_006350749.1| - 0.00025 20.0 1.9 4.8 6.0 0.1 4.0 2 2 2 4 4 4 3 Domain of unknown function (DUF4185) BNR_3 PF13859.1 gi|389848511|ref|YP_006350749.1| - 0.23 10.5 3.4 1.9 7.4 0.1 3.2 3 1 0 4 4 4 0 BNR repeat-like domain DUF4440 PF14534.1 gi|389848512|ref|YP_006350750.1| - 2.1e-09 37.5 0.2 2.6e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.2 gi|389848512|ref|YP_006350750.1| - 1.2e-08 35.2 0.3 1.7e-08 34.8 0.2 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|389848512|ref|YP_006350750.1| - 3.7e-06 26.9 0.1 5.4e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|389848512|ref|YP_006350750.1| - 8.2e-06 25.7 0.8 1.2e-05 25.2 0.5 1.3 1 1 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.2 gi|389848512|ref|YP_006350750.1| - 0.0031 18.0 0.4 0.0065 16.9 0.3 1.6 1 1 0 1 1 1 1 Putative lumazine-binding CaMKII_AD PF08332.5 gi|389848512|ref|YP_006350750.1| - 0.0039 17.0 0.0 0.0054 16.6 0.0 1.1 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II Association DUF1348 PF07080.6 gi|389848512|ref|YP_006350750.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) SH3_1 PF00018.23 gi|389848512|ref|YP_006350750.1| - 0.027 13.8 0.0 0.06 12.7 0.0 1.5 1 0 0 1 1 1 0 SH3 domain NTF2 PF02136.15 gi|389848512|ref|YP_006350750.1| - 0.037 14.3 0.0 0.083 13.2 0.0 1.7 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain zf-AN1 PF01428.11 gi|389848513|ref|YP_006350751.1| - 0.079 12.8 1.4 0.079 12.8 1.0 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger Elf1 PF05129.8 gi|389848513|ref|YP_006350751.1| - 0.61 9.8 3.2 0.76 9.5 2.3 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2248 PF10005.4 gi|389848513|ref|YP_006350751.1| - 0.75 8.6 2.9 0.79 8.5 2.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2248) zf-MYND PF01753.13 gi|389848513|ref|YP_006350751.1| - 0.96 9.3 4.9 9.6 6.1 1.1 2.1 1 1 1 2 2 2 0 MYND finger Lar_restr_allev PF14354.1 gi|389848513|ref|YP_006350751.1| - 1.3 9.3 5.9 9.3 6.6 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar bPH_2 PF03703.9 gi|389848514|ref|YP_006350752.1| - 0.079 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain NTP_transf_2 PF01909.18 gi|389848515|ref|YP_006350753.1| - 0.00042 20.5 0.0 0.00059 20.1 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain HEAT_2 PF13646.1 gi|389848517|ref|YP_006350755.1| - 1e-30 105.8 47.9 9.1e-10 38.6 2.3 7.7 2 2 6 8 8 8 8 HEAT repeats Adaptin_N PF01602.15 gi|389848517|ref|YP_006350755.1| - 1.5e-21 76.3 0.0 6.4e-05 21.4 0.0 5.5 2 1 4 6 6 6 4 Adaptin N terminal region HEAT_EZ PF13513.1 gi|389848517|ref|YP_006350755.1| - 3.9e-20 71.7 53.9 9.1e-07 29.1 2.4 10.9 6 5 6 12 12 11 7 HEAT-like repeat HEAT PF02985.17 gi|389848517|ref|YP_006350755.1| - 1.7e-19 68.0 19.3 0.00021 21.0 0.1 9.5 9 0 0 9 9 9 4 HEAT repeat Cnd1 PF12717.2 gi|389848517|ref|YP_006350755.1| - 1.4e-09 38.0 0.0 0.017 15.0 0.0 5.2 4 1 0 4 4 4 2 non-SMC mitotic condensation complex subunit 1 DNA_alkylation PF08713.6 gi|389848517|ref|YP_006350755.1| - 7e-06 25.6 0.5 1.6 8.1 0.0 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme HEAT_PBS PF03130.11 gi|389848517|ref|YP_006350755.1| - 1.2e-05 25.3 52.6 0.042 14.3 0.7 11.2 14 0 0 14 14 8 5 PBS lyase HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|389848517|ref|YP_006350755.1| - 0.0004 20.7 0.1 6.4 7.2 0.0 4.2 4 1 2 6 6 4 1 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|389848517|ref|YP_006350755.1| - 0.0053 16.5 6.8 5.7 6.9 0.0 6.7 8 0 0 8 8 7 1 Armadillo/beta-catenin-like repeat MMS19_N PF14500.1 gi|389848517|ref|YP_006350755.1| - 0.012 14.9 0.4 0.72 9.0 0.0 3.6 3 2 1 4 4 4 0 Dos2-interacting transcription regulator of RNA-Pol-II TipAS PF07739.8 gi|389848517|ref|YP_006350755.1| - 0.042 14.1 0.7 8.9 6.6 0.1 3.4 2 1 0 3 3 3 0 TipAS antibiotic-recognition domain TIP120 PF08623.5 gi|389848517|ref|YP_006350755.1| - 0.046 13.3 0.1 8.5 5.9 0.0 3.2 3 0 0 3 3 3 0 TATA-binding protein interacting (TIP20) DUF3385 PF11865.3 gi|389848517|ref|YP_006350755.1| - 0.052 13.4 0.2 26 4.6 0.0 3.7 3 2 2 5 5 5 0 Domain of unknown function (DUF3385) APP_E2 PF12925.2 gi|389848517|ref|YP_006350755.1| - 0.057 12.9 0.1 0.28 10.7 0.0 2.2 2 0 0 2 2 2 0 E2 domain of amyloid precursor protein FANCI_S2 PF14676.1 gi|389848517|ref|YP_006350755.1| - 0.097 12.5 0.0 8.7 6.2 0.0 3.5 3 2 1 4 4 4 0 FANCI solenoid 2 XLF PF09302.6 gi|389848517|ref|YP_006350755.1| - 0.12 12.1 0.2 4.9 6.9 0.0 3.1 2 1 2 4 4 4 0 XLF (XRCC4-like factor) Proteasom_PSMB PF10508.4 gi|389848517|ref|YP_006350755.1| - 0.16 10.2 0.2 32 2.6 0.0 3.7 4 1 1 5 5 5 0 Proteasome non-ATPase 26S subunit Ecm29 PF13001.2 gi|389848517|ref|YP_006350755.1| - 0.17 10.3 0.1 26 3.1 0.0 3.4 4 0 0 4 4 4 0 Proteasome stabiliser DUF4042 PF13251.1 gi|389848517|ref|YP_006350755.1| - 0.34 10.3 1.4 24 4.3 0.0 3.7 2 1 2 4 4 4 0 Domain of unknown function (DUF4042) EF-hand_9 PF14658.1 gi|389848517|ref|YP_006350755.1| - 5.1 7.0 6.9 5.5 6.9 0.2 3.6 3 1 1 4 4 4 0 EF-hand domain DUF3592 PF12158.3 gi|389848519|ref|YP_006350757.1| - 8.9e-12 45.0 0.0 2.4e-11 43.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) GIDE PF12483.3 gi|389848519|ref|YP_006350757.1| - 0.00016 21.0 0.0 0.00069 19.0 0.0 2.1 1 1 0 1 1 1 1 E3 Ubiquitin ligase Imm5 PF14423.1 gi|389848521|ref|YP_006350759.1| - 2.7e-17 62.9 0.0 3.6e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Immunity protein Imm5 MarR_2 PF12802.2 gi|389848525|ref|YP_006350763.1| - 3.3e-09 36.2 0.0 4.9e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389848525|ref|YP_006350763.1| - 6.7e-09 35.2 0.3 9.4e-09 34.8 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389848525|ref|YP_006350763.1| - 7.7e-09 35.2 0.1 1e-08 34.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389848525|ref|YP_006350763.1| - 7.4e-08 31.6 0.1 9.8e-08 31.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389848525|ref|YP_006350763.1| - 2.2e-07 30.3 0.2 7e-07 28.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389848525|ref|YP_006350763.1| - 1.8e-05 24.3 0.1 2.4e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|389848525|ref|YP_006350763.1| - 2.2e-05 24.0 0.2 3.5e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|389848525|ref|YP_006350763.1| - 5.3e-05 23.4 0.2 6.5e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|389848525|ref|YP_006350763.1| - 5.7e-05 22.7 0.1 7.7e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|389848525|ref|YP_006350763.1| - 0.00062 19.6 0.1 0.00091 19.1 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|389848525|ref|YP_006350763.1| - 0.00081 19.1 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain KorB PF08535.5 gi|389848525|ref|YP_006350763.1| - 0.0017 18.4 0.0 0.0029 17.7 0.0 1.3 1 0 0 1 1 1 1 KorB domain GntR PF00392.16 gi|389848525|ref|YP_006350763.1| - 0.002 17.5 0.1 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.11 gi|389848525|ref|YP_006350763.1| - 0.0021 18.1 0.1 0.0025 17.8 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_38 PF13936.1 gi|389848525|ref|YP_006350763.1| - 0.0024 17.3 0.0 0.0036 16.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389848525|ref|YP_006350763.1| - 0.0036 16.8 0.0 0.0051 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|389848525|ref|YP_006350763.1| - 0.0039 17.2 0.1 0.0049 16.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|389848525|ref|YP_006350763.1| - 0.0096 16.0 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma54_DBD PF04552.8 gi|389848525|ref|YP_006350763.1| - 0.019 14.5 0.1 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_29 PF13551.1 gi|389848525|ref|YP_006350763.1| - 0.025 14.6 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.7 gi|389848525|ref|YP_006350763.1| - 0.029 13.9 0.1 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389848525|ref|YP_006350763.1| - 0.03 13.8 0.0 0.056 12.9 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.5 gi|389848525|ref|YP_006350763.1| - 0.031 14.0 0.0 0.05 13.3 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF370 PF04025.7 gi|389848525|ref|YP_006350763.1| - 0.033 14.2 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF370) HTH_34 PF13601.1 gi|389848525|ref|YP_006350763.1| - 0.034 14.1 0.1 0.042 13.8 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.7 gi|389848525|ref|YP_006350763.1| - 0.12 11.5 0.1 0.14 11.3 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF2318 PF10080.4 gi|389848526|ref|YP_006350764.1| - 0.01 15.5 0.1 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Nudix_N_2 PF14803.1 gi|389848526|ref|YP_006350764.1| - 0.01 15.4 1.5 1.3 8.7 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|389848526|ref|YP_006350764.1| - 0.011 15.5 1.1 0.021 14.6 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389848526|ref|YP_006350764.1| - 0.012 15.0 0.9 2.7 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DRP PF06044.7 gi|389848526|ref|YP_006350764.1| - 0.028 13.3 0.6 0.056 12.4 0.3 1.4 1 1 1 2 2 2 0 Dam-replacing family Lar_restr_allev PF14354.1 gi|389848526|ref|YP_006350764.1| - 0.042 14.1 3.1 0.12 12.7 2.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar GFA PF04828.9 gi|389848526|ref|YP_006350764.1| - 0.053 13.4 1.6 1.8 8.5 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|389848526|ref|YP_006350764.1| - 0.057 13.2 0.1 0.17 11.7 0.4 1.6 2 0 0 2 2 2 0 zinc-ribbons C1_1 PF00130.17 gi|389848526|ref|YP_006350764.1| - 0.079 12.7 0.9 0.12 12.1 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|389848526|ref|YP_006350764.1| - 0.093 11.9 4.7 1.5 8.0 3.6 2.2 1 1 2 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|389848526|ref|YP_006350764.1| - 0.13 11.9 1.4 0.78 9.4 0.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DUF1272 PF06906.6 gi|389848526|ref|YP_006350764.1| - 1 9.2 3.3 6.7 6.6 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF1293 PF06950.6 gi|389848527|ref|YP_006350765.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1293) Zn-ribbon_8 PF09723.5 gi|389848528|ref|YP_006350766.1| - 0.0017 18.2 1.7 0.82 9.6 0.2 2.2 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|389848528|ref|YP_006350766.1| - 0.0099 15.5 0.4 0.014 15.0 0.3 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|389848528|ref|YP_006350766.1| - 0.026 13.8 1.1 1.9 7.8 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|389848528|ref|YP_006350766.1| - 0.045 13.5 1.2 1.8 8.4 1.1 2.0 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|389848528|ref|YP_006350766.1| - 0.045 13.2 0.6 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|389848528|ref|YP_006350766.1| - 0.061 13.6 0.9 0.067 13.5 0.6 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|389848528|ref|YP_006350766.1| - 0.09 12.7 0.7 0.12 12.2 0.5 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|389848528|ref|YP_006350766.1| - 0.12 12.0 0.3 0.12 12.0 0.2 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.1 gi|389848528|ref|YP_006350766.1| - 0.15 12.4 1.2 3.9 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Opy2 PF09463.5 gi|389848528|ref|YP_006350766.1| - 0.22 11.6 4.1 0.69 10.0 0.6 2.1 2 0 0 2 2 2 0 Opy2 protein Sgf11 PF08209.6 gi|389848528|ref|YP_006350766.1| - 0.26 10.6 1.2 5 6.5 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-Mss51 PF13824.1 gi|389848528|ref|YP_006350766.1| - 0.27 11.1 2.1 0.59 10.0 1.5 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.8 gi|389848528|ref|YP_006350766.1| - 0.37 10.3 5.0 2.2 7.8 3.6 1.9 1 1 0 1 1 1 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|389848528|ref|YP_006350766.1| - 0.46 9.7 4.4 2.1 7.6 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389848528|ref|YP_006350766.1| - 0.47 10.0 3.4 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|389848528|ref|YP_006350766.1| - 0.68 9.7 5.3 5.1 6.9 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.3 gi|389848528|ref|YP_006350766.1| - 0.91 9.5 5.2 7.7 6.5 0.9 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|389848528|ref|YP_006350766.1| - 1.1 9.0 3.7 3.2 7.6 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|389848528|ref|YP_006350766.1| - 1.8 8.6 5.4 24 5.0 0.6 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HA PF03457.9 gi|389848532|ref|YP_006350770.1| - 0.098 12.7 0.3 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 Helicase associated domain MgtE PF01769.11 gi|389848534|ref|YP_006350772.1| - 2.9e-19 69.6 7.5 5.6e-19 68.7 5.2 1.5 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.12 gi|389848534|ref|YP_006350772.1| - 2.9e-14 53.2 0.3 8.9e-14 51.6 0.1 1.9 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.23 gi|389848534|ref|YP_006350772.1| - 4.8e-10 39.0 1.0 1.3e-05 24.8 0.1 2.7 3 0 0 3 3 3 2 CBS domain zf-ribbon_3 PF13248.1 gi|389848535|ref|YP_006350773.1| - 0.0012 17.9 1.8 0.099 11.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|389848535|ref|YP_006350773.1| - 0.0014 18.5 0.6 1.4 8.8 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain RecR PF02132.10 gi|389848535|ref|YP_006350773.1| - 0.0072 15.7 0.5 2.5 7.5 0.0 2.2 2 0 0 2 2 2 2 RecR protein zf-trcl PF13451.1 gi|389848535|ref|YP_006350773.1| - 0.0092 15.5 1.7 0.13 11.8 0.1 2.1 2 0 0 2 2 2 1 Probable zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|389848535|ref|YP_006350773.1| - 0.0095 15.2 4.8 0.13 11.6 0.1 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding YhfH PF14149.1 gi|389848535|ref|YP_006350773.1| - 0.013 15.2 1.9 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-LITAF-like PF10601.4 gi|389848535|ref|YP_006350773.1| - 0.017 15.0 1.4 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-ISL3 PF14690.1 gi|389848535|ref|YP_006350773.1| - 0.022 14.8 1.3 2.8 8.0 0.0 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|389848535|ref|YP_006350773.1| - 0.027 14.0 5.9 0.077 12.6 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_2 PF13240.1 gi|389848535|ref|YP_006350773.1| - 0.034 13.6 4.2 0.33 10.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|389848535|ref|YP_006350773.1| - 0.036 13.8 2.4 0.13 12.1 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon Rpr2 PF04032.11 gi|389848535|ref|YP_006350773.1| - 0.037 13.9 0.2 0.046 13.5 0.1 1.2 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-C2H2_3 PF13878.1 gi|389848535|ref|YP_006350773.1| - 0.041 13.4 1.8 0.89 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-tcix PF14952.1 gi|389848535|ref|YP_006350773.1| - 0.06 12.6 2.8 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.5 gi|389848535|ref|YP_006350773.1| - 0.063 12.7 0.9 7.5 6.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|389848535|ref|YP_006350773.1| - 0.11 12.1 6.6 0.5 10.1 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|389848535|ref|YP_006350773.1| - 0.12 12.0 1.9 3.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|389848535|ref|YP_006350773.1| - 0.22 11.2 1.8 11 5.8 0.0 2.5 2 1 1 3 3 3 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|389848535|ref|YP_006350773.1| - 0.28 10.6 3.4 2 7.9 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit COX5B PF01215.14 gi|389848535|ref|YP_006350773.1| - 0.4 10.3 1.8 1.9 8.1 0.1 2.0 1 1 0 2 2 2 0 Cytochrome c oxidase subunit Vb OrfB_Zn_ribbon PF07282.6 gi|389848535|ref|YP_006350773.1| - 0.44 10.2 3.8 4.4 7.0 2.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|389848535|ref|YP_006350773.1| - 0.52 10.1 4.7 4.5 7.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|389848535|ref|YP_006350773.1| - 0.68 10.1 0.2 0.68 10.1 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2_6 PF13912.1 gi|389848535|ref|YP_006350773.1| - 0.91 9.5 4.0 4.9 7.1 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger DUF3797 PF12677.2 gi|389848535|ref|YP_006350773.1| - 1.4 8.5 5.0 6 6.5 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) RRN7 PF11781.3 gi|389848535|ref|YP_006350773.1| - 1.9 8.0 4.4 66 3.1 3.1 2.5 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF35_N PF12172.3 gi|389848535|ref|YP_006350773.1| - 3.7 7.5 6.2 1.2e+02 2.7 4.3 2.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Na_Ca_ex PF01699.19 gi|389848536|ref|YP_006350774.1| - 1.4e-25 89.5 22.7 9.9e-13 47.8 5.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein CBS PF00571.23 gi|389848537|ref|YP_006350775.1| - 1.8e-41 139.6 8.3 3.1e-12 46.0 0.1 4.2 4 0 0 4 4 4 4 CBS domain zf-ribbon_3 PF13248.1 gi|389848538|ref|YP_006350776.1| - 0.029 13.5 6.0 0.11 11.7 2.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389848538|ref|YP_006350776.1| - 0.071 12.6 5.5 0.26 10.8 1.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S26e PF01283.14 gi|389848538|ref|YP_006350776.1| - 0.15 12.3 1.2 1 9.6 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S26e DZR PF12773.2 gi|389848538|ref|YP_006350776.1| - 0.28 11.0 9.7 0.21 11.4 0.5 2.7 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|389848538|ref|YP_006350776.1| - 0.34 10.6 7.0 0.81 9.4 0.4 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family FdhE PF04216.7 gi|389848538|ref|YP_006350776.1| - 0.43 10.2 7.5 1.9 8.1 0.6 2.5 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation FYVE PF01363.16 gi|389848538|ref|YP_006350776.1| - 0.72 9.7 7.6 3.4 7.6 0.4 2.4 2 0 0 2 2 2 0 FYVE zinc finger Sgf11 PF08209.6 gi|389848538|ref|YP_006350776.1| - 1 8.7 6.1 3.7 6.9 0.2 2.6 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RNA_POL_M_15KD PF02150.11 gi|389848538|ref|YP_006350776.1| - 1.9 8.2 9.5 6.7 6.4 0.1 3.7 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit C1_1 PF00130.17 gi|389848538|ref|YP_006350776.1| - 3.7 7.3 7.9 14 5.4 1.0 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_20 PF12840.2 gi|389848540|ref|YP_006350778.1| - 0.00029 20.5 0.0 0.00067 19.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389848540|ref|YP_006350778.1| - 0.0025 17.1 0.0 0.0092 15.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389848540|ref|YP_006350778.1| - 0.007 16.0 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|389848540|ref|YP_006350778.1| - 0.051 13.1 0.0 1.9 8.1 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|389848540|ref|YP_006350778.1| - 0.057 13.0 0.2 1.5 8.5 0.0 2.5 3 0 0 3 3 3 0 MarR family LexA_DNA_bind PF01726.11 gi|389848540|ref|YP_006350778.1| - 0.063 12.8 0.0 0.31 10.6 0.0 2.2 2 1 1 3 3 3 0 LexA DNA binding domain HTH_5 PF01022.15 gi|389848540|ref|YP_006350778.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2746 PF10874.3 gi|389848541|ref|YP_006350779.1| - 0.097 12.8 0.2 0.13 12.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2746) TFIIB PF00382.14 gi|389848542|ref|YP_006350780.1| - 1.3e-29 101.7 5.3 4.4e-16 58.4 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|389848542|ref|YP_006350780.1| - 2e-11 42.9 2.7 3.7e-11 42.1 1.9 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_24 PF13412.1 gi|389848542|ref|YP_006350780.1| - 0.0083 15.4 0.1 0.03 13.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Prok-RING_1 PF14446.1 gi|389848542|ref|YP_006350780.1| - 0.052 13.2 2.0 0.14 11.9 1.4 1.7 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HTH_AsnC-type PF13404.1 gi|389848542|ref|YP_006350780.1| - 0.12 11.9 2.3 0.3 10.6 0.2 2.7 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain UPF0547 PF10571.4 gi|389848542|ref|YP_006350780.1| - 0.3 10.8 3.3 0.58 9.8 2.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HEM4 PF02602.10 gi|389848543|ref|YP_006350781.1| - 0.006 15.8 0.0 0.0098 15.1 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD FlaC_arch PF05377.6 gi|389848544|ref|YP_006350782.1| - 0.0025 17.6 0.7 0.0046 16.8 0.2 1.6 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) HSBP1 PF06825.7 gi|389848544|ref|YP_006350782.1| - 0.0035 16.8 0.1 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 Heat shock factor binding protein 1 Tropomyosin_1 PF12718.2 gi|389848544|ref|YP_006350782.1| - 0.018 14.9 1.1 0.019 14.8 0.8 1.1 1 0 0 1 1 1 0 Tropomyosin like HEXIM PF15313.1 gi|389848544|ref|YP_006350782.1| - 0.025 14.7 0.2 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein TBPIP PF07106.8 gi|389848544|ref|YP_006350782.1| - 0.029 13.9 0.6 0.031 13.8 0.4 1.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1515 PF07439.6 gi|389848544|ref|YP_006350782.1| - 0.032 14.0 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) HR1 PF02185.11 gi|389848544|ref|YP_006350782.1| - 0.047 13.4 0.7 0.047 13.4 0.5 1.1 1 0 0 1 1 1 0 Hr1 repeat Surfac_D-trimer PF09006.6 gi|389848544|ref|YP_006350782.1| - 0.052 13.2 0.1 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation Lebercilin PF15619.1 gi|389848544|ref|YP_006350782.1| - 0.057 12.8 0.8 0.062 12.7 0.5 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Phasin PF05597.6 gi|389848544|ref|YP_006350782.1| - 0.065 13.0 0.5 0.067 12.9 0.3 1.0 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Seryl_tRNA_N PF02403.17 gi|389848544|ref|YP_006350782.1| - 0.081 12.9 0.1 0.081 12.9 0.1 1.1 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain bZIP_1 PF00170.16 gi|389848544|ref|YP_006350782.1| - 0.086 12.8 0.3 0.11 12.4 0.2 1.2 1 0 0 1 1 1 0 bZIP transcription factor PspB PF06667.7 gi|389848544|ref|YP_006350782.1| - 0.089 12.7 0.1 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Phage shock protein B Syntaxin-6_N PF09177.6 gi|389848544|ref|YP_006350782.1| - 0.12 12.8 0.3 0.14 12.5 0.2 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Sugarporin_N PF11471.3 gi|389848544|ref|YP_006350782.1| - 0.12 11.9 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Med9 PF07544.8 gi|389848544|ref|YP_006350782.1| - 0.13 11.9 0.2 0.19 11.4 0.2 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Bap31 PF05529.7 gi|389848544|ref|YP_006350782.1| - 0.14 11.6 0.5 0.14 11.6 0.3 1.0 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like IncA PF04156.9 gi|389848544|ref|YP_006350782.1| - 0.14 11.7 0.8 0.15 11.6 0.6 1.0 1 0 0 1 1 1 0 IncA protein AAA_22 PF13401.1 gi|389848545|ref|YP_006350783.1| - 0.025 14.7 0.0 0.082 13.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|389848545|ref|YP_006350783.1| - 0.077 11.9 3.5 2.2 7.2 1.0 2.5 1 1 1 2 2 2 0 KAP family P-loop domain DUF2072 PF09845.4 gi|389848545|ref|YP_006350783.1| - 0.16 11.9 1.4 4.7 7.1 0.0 3.1 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) AAA_18 PF13238.1 gi|389848545|ref|YP_006350783.1| - 0.45 10.8 4.3 0.96 9.7 0.0 3.9 4 0 0 4 4 4 0 AAA domain DUF1798 PF08807.5 gi|389848546|ref|YP_006350784.1| - 0.033 13.9 0.2 0.036 13.7 0.2 1.1 1 0 0 1 1 1 0 Bacterial domain of unknown function (DUF1798) DUF896 PF05979.7 gi|389848546|ref|YP_006350784.1| - 0.098 12.2 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) zf-C2H2_6 PF13912.1 gi|389848547|ref|YP_006350785.1| - 1.1e-09 37.8 1.0 0.00049 19.9 0.0 2.9 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|389848547|ref|YP_006350785.1| - 1.8e-05 24.7 0.1 0.35 11.2 0.0 2.8 2 0 0 2 2 2 2 Zinc finger, C2H2 type HNH_2 PF13391.1 gi|389848547|ref|YP_006350785.1| - 4.8e-05 23.0 1.0 0.00011 21.9 0.7 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.18 gi|389848547|ref|YP_006350785.1| - 0.00029 20.6 2.8 0.00029 20.6 2.0 3.0 3 0 0 3 3 3 1 HNH endonuclease zf-C2H2_jaz PF12171.3 gi|389848547|ref|YP_006350785.1| - 0.0011 19.0 0.1 1.9 8.7 0.1 2.6 2 0 0 2 2 2 2 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|389848547|ref|YP_006350785.1| - 0.0021 18.2 0.2 0.029 14.5 0.0 2.5 2 0 0 2 2 2 1 Zinc-finger of C2H2 type LexA_DNA_bind PF01726.11 gi|389848547|ref|YP_006350785.1| - 0.027 14.0 0.0 3.2 7.3 0.0 3.0 3 0 0 3 3 3 0 LexA DNA binding domain Sigma70_r3 PF04539.11 gi|389848547|ref|YP_006350785.1| - 0.035 13.9 2.9 35 4.3 0.1 3.3 3 0 0 3 3 3 0 Sigma-70 region 3 Zn-ribbon_8 PF09723.5 gi|389848547|ref|YP_006350785.1| - 0.48 10.4 13.1 0.31 11.0 0.2 3.1 3 1 0 3 3 3 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|389848547|ref|YP_006350785.1| - 8.9 6.8 8.8 1.6 9.1 0.2 2.8 3 0 0 3 3 3 0 Zinc-finger double domain tRNA_anti-codon PF01336.20 gi|389848548|ref|YP_006350786.1| - 9.1e-05 22.2 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain MCM2_N PF12619.3 gi|389848548|ref|YP_006350786.1| - 0.089 12.7 12.1 0.13 12.2 8.4 1.2 1 0 0 1 1 1 0 Mini-chromosome maintenance protein 2 eRF1_2 PF03464.10 gi|389848549|ref|YP_006350787.1| - 1.1e-26 93.7 0.0 1.7e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|389848549|ref|YP_006350787.1| - 9.5e-17 61.2 0.0 1.1e-15 57.8 0.0 2.4 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|389848549|ref|YP_006350787.1| - 1.4e-08 34.3 0.1 3e-08 33.2 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 1 Zeta_toxin PF06414.7 gi|389848549|ref|YP_006350787.1| - 0.075 12.1 0.7 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin Dynactin PF12455.3 gi|389848551|ref|YP_006350789.1| - 0.019 13.9 0.1 0.021 13.7 0.1 1.0 1 0 0 1 1 1 0 Dynein associated protein PemK PF02452.12 gi|389848553|ref|YP_006350791.1| - 3.6e-06 27.1 0.0 4.1e-06 26.9 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|389848554|ref|YP_006350792.1| - 4.2e-07 29.5 0.0 6e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|389848554|ref|YP_006350792.1| - 6.4e-05 22.6 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|389848554|ref|YP_006350792.1| - 0.00022 21.2 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|389848554|ref|YP_006350792.1| - 0.0004 20.4 0.0 0.00058 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389848554|ref|YP_006350792.1| - 0.00078 19.0 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389848554|ref|YP_006350792.1| - 0.00098 18.4 0.0 0.0022 17.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|389848554|ref|YP_006350792.1| - 0.0015 18.8 0.1 0.0026 18.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|389848554|ref|YP_006350792.1| - 0.002 17.9 0.1 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|389848554|ref|YP_006350792.1| - 0.0035 16.9 0.4 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|389848554|ref|YP_006350792.1| - 0.0048 16.7 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|389848554|ref|YP_006350792.1| - 0.0056 16.2 0.0 0.0085 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389848554|ref|YP_006350792.1| - 0.0056 16.3 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|389848554|ref|YP_006350792.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|389848554|ref|YP_006350792.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.1 gi|389848554|ref|YP_006350792.1| - 0.027 14.2 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|389848554|ref|YP_006350792.1| - 0.032 13.7 0.1 0.064 12.7 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.15 gi|389848554|ref|YP_006350792.1| - 0.05 13.2 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PaaX PF07848.7 gi|389848554|ref|YP_006350792.1| - 0.062 13.2 0.2 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.1 gi|389848554|ref|YP_006350792.1| - 0.067 13.3 0.1 0.091 12.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|389848554|ref|YP_006350792.1| - 0.086 12.8 0.3 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0240 PF06784.6 gi|389848554|ref|YP_006350792.1| - 0.092 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) HTH_20 PF12840.2 gi|389848554|ref|YP_006350792.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|389848554|ref|YP_006350792.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Glyco_tranf_2_4 PF13704.1 gi|389848554|ref|YP_006350792.1| - 1.4 9.2 7.5 0.38 11.1 0.5 2.9 1 1 1 2 2 2 0 Glycosyl transferase family 2 NinF PF05810.7 gi|389848555|ref|YP_006350793.1| - 0.063 13.0 0.1 0.063 13.0 0.1 1.7 2 0 0 2 2 2 0 NinF protein zf-RING_5 PF14634.1 gi|389848555|ref|YP_006350793.1| - 0.12 12.1 3.3 3.6 7.3 0.2 2.7 3 0 0 3 3 3 0 zinc-RING finger domain PHD PF00628.24 gi|389848555|ref|YP_006350793.1| - 0.33 10.6 4.9 0.24 11.1 1.4 1.9 2 0 0 2 2 2 0 PHD-finger zf-C3HC4_4 PF15227.1 gi|389848555|ref|YP_006350793.1| - 2.9 7.8 5.4 0.82 9.6 0.7 2.2 2 1 0 2 2 2 0 zinc finger of C3HC4-type, RING zf-C3HC4 PF00097.20 gi|389848555|ref|YP_006350793.1| - 4.3 7.0 6.7 0.68 9.6 1.5 2.0 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|389848555|ref|YP_006350793.1| - 4.3 7.2 7.0 21 5.0 4.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon FUR PF01475.14 gi|389848556|ref|YP_006350794.1| - 0.0039 17.0 0.1 0.0053 16.6 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Tnp_Tc3_2 PF01498.13 gi|389848556|ref|YP_006350794.1| - 0.014 15.3 0.1 0.026 14.5 0.1 1.4 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.7 gi|389848556|ref|YP_006350794.1| - 0.027 14.0 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain TatD_DNase PF01026.16 gi|389848556|ref|YP_006350794.1| - 0.067 12.3 0.0 0.099 11.8 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase S_tail_recep_bd PF14928.1 gi|389848556|ref|YP_006350794.1| - 0.14 12.4 0.1 0.74 10.0 0.0 2.0 1 1 1 2 2 2 0 Short tail fibre protein receptor-binding domain Tic20 PF09685.5 gi|389848557|ref|YP_006350795.1| - 1.2e-15 57.3 3.9 1.2e-15 57.3 2.7 2.9 2 1 0 2 2 2 1 Tic20-like protein Endonuc-BglII PF09195.6 gi|389848558|ref|YP_006350796.1| - 0.0052 16.2 0.0 0.0087 15.5 0.0 1.6 1 1 0 1 1 1 1 Restriction endonuclease BglII DDE_Tnp_1 PF01609.16 gi|389848561|ref|YP_006350799.1| - 1.2e-11 44.5 0.8 3.3e-11 43.1 0.5 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|389848561|ref|YP_006350799.1| - 0.00015 21.8 0.3 0.00015 21.8 0.2 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|389848561|ref|YP_006350799.1| - 0.0002 21.1 0.0 0.00027 20.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|389848561|ref|YP_006350799.1| - 0.0059 16.6 0.1 0.0095 15.9 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF3154 PF11351.3 gi|389848565|ref|YP_006350803.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) HTH_20 PF12840.2 gi|389848566|ref|YP_006350804.1| - 1.1e-08 34.7 0.3 1.7e-08 34.1 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389848566|ref|YP_006350804.1| - 0.00012 21.4 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389848566|ref|YP_006350804.1| - 0.00021 20.8 0.1 0.00053 19.5 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|389848566|ref|YP_006350804.1| - 0.00022 20.8 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|389848566|ref|YP_006350804.1| - 0.0016 17.9 0.0 0.0033 16.9 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|389848566|ref|YP_006350804.1| - 0.0054 16.2 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389848566|ref|YP_006350804.1| - 0.026 14.2 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389848566|ref|YP_006350804.1| - 0.038 13.6 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|389848566|ref|YP_006350804.1| - 0.041 13.1 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 ATP-synt_C PF00137.16 gi|389848567|ref|YP_006350805.1| - 0.00064 19.5 0.9 0.0013 18.5 0.6 1.5 1 1 1 2 2 2 2 ATP synthase subunit C Bundlin PF05307.6 gi|389848567|ref|YP_006350805.1| - 0.04 13.7 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Bundlin DUF3681 PF12442.3 gi|389848567|ref|YP_006350805.1| - 0.29 11.3 2.3 0.33 11.1 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3681) PIN PF01850.16 gi|389848569|ref|YP_006350807.1| - 0.0025 18.1 0.4 0.0028 17.9 0.3 1.2 1 0 0 1 1 1 1 PIN domain WVELL PF14043.1 gi|389848570|ref|YP_006350808.1| - 0.0032 17.0 1.2 0.0046 16.5 0.9 1.3 1 0 0 1 1 1 1 WVELL protein Trehalase PF01204.13 gi|389848570|ref|YP_006350808.1| - 0.088 11.4 0.3 0.092 11.3 0.2 1.0 1 0 0 1 1 1 0 Trehalase SWIM PF04434.12 gi|389848571|ref|YP_006350809.1| - 0.0014 18.0 1.0 0.0029 17.0 0.7 1.5 1 0 0 1 1 1 1 SWIM zinc finger Barstar PF01337.13 gi|389848571|ref|YP_006350809.1| - 0.091 12.6 1.0 1 9.2 0.0 2.9 3 1 0 3 3 3 0 Barstar (barnase inhibitor) TrmB PF01978.14 gi|389848573|ref|YP_006350811.1| - 7.1e-06 25.6 0.2 1.9e-05 24.2 0.0 1.9 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389848573|ref|YP_006350811.1| - 1e-05 25.0 0.0 2.1e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389848573|ref|YP_006350811.1| - 0.00061 19.3 0.1 0.0019 17.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|389848573|ref|YP_006350811.1| - 0.00063 19.3 0.0 0.0048 16.5 0.0 2.2 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.1 gi|389848573|ref|YP_006350811.1| - 0.0023 17.2 0.3 0.005 16.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|389848573|ref|YP_006350811.1| - 0.0037 17.3 0.8 0.0087 16.2 0.2 1.9 1 1 1 2 2 2 1 Winged helix-turn helix HTH_20 PF12840.2 gi|389848573|ref|YP_006350811.1| - 0.005 16.6 0.2 0.016 14.9 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_6 PF01418.12 gi|389848573|ref|YP_006350811.1| - 0.0051 16.5 0.0 0.014 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_28 PF13518.1 gi|389848573|ref|YP_006350811.1| - 0.011 15.7 0.0 0.033 14.2 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain TBPIP PF07106.8 gi|389848573|ref|YP_006350811.1| - 0.014 14.9 0.5 0.022 14.3 0.1 1.5 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_23 PF13384.1 gi|389848573|ref|YP_006350811.1| - 0.024 14.2 0.0 0.069 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain WYL PF13280.1 gi|389848573|ref|YP_006350811.1| - 0.04 13.7 0.5 0.39 10.5 0.4 2.0 1 1 0 1 1 1 0 WYL domain Fe_dep_repress PF01325.14 gi|389848573|ref|YP_006350811.1| - 0.046 13.6 0.0 0.12 12.3 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|389848573|ref|YP_006350811.1| - 0.053 12.6 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|389848573|ref|YP_006350811.1| - 0.068 12.7 0.1 0.3 10.6 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain phage_tail_N PF08400.5 gi|389848573|ref|YP_006350811.1| - 0.073 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Prophage tail fibre N-terminal DUF1764 PF08576.5 gi|389848573|ref|YP_006350811.1| - 0.082 13.6 0.2 0.14 12.9 0.2 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF1764) HTH_5 PF01022.15 gi|389848573|ref|YP_006350811.1| - 0.088 12.4 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|389848573|ref|YP_006350811.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TcdB_N PF12918.2 gi|389848573|ref|YP_006350811.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain GerE PF00196.14 gi|389848573|ref|YP_006350811.1| - 0.12 11.6 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF1192 PF06698.6 gi|389848573|ref|YP_006350811.1| - 1.7 8.5 5.5 12 5.8 0.3 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) TFIIB PF00382.14 gi|389848574|ref|YP_006350812.1| - 0.00039 20.1 0.0 0.00046 19.9 0.0 1.2 1 0 0 1 1 1 1 Transcription factor TFIIB repeat MarR_2 PF12802.2 gi|389848574|ref|YP_006350812.1| - 0.1 12.2 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 MarR family PqqD PF05402.7 gi|389848576|ref|YP_006350814.1| - 0.21 11.6 1.3 0.33 11.0 0.2 1.7 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) zf-HC2 PF13490.1 gi|389848576|ref|YP_006350814.1| - 4.1 7.4 5.5 19 5.3 0.7 2.1 1 1 1 2 2 2 0 Putative zinc-finger Fic PF02661.13 gi|389848577|ref|YP_006350815.1| - 1.4e-08 35.3 0.0 5.3e-08 33.4 0.0 1.9 1 1 0 1 1 1 1 Fic/DOC family Lactamase_B PF00753.22 gi|389848579|ref|YP_006350817.1| - 4.4e-11 42.8 5.8 4.4e-11 42.8 4.0 2.1 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389848579|ref|YP_006350817.1| - 3.8e-10 39.6 0.7 9e-10 38.4 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|389848579|ref|YP_006350817.1| - 0.029 14.0 0.1 0.065 12.9 0.1 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DDE_Tnp_IS240 PF13610.1 gi|389848580|ref|YP_006350818.1| - 1.3e-26 93.1 0.1 2.3e-26 92.4 0.0 1.4 2 0 0 2 2 2 1 DDE domain rve_3 PF13683.1 gi|389848580|ref|YP_006350818.1| - 3.6e-09 36.0 0.9 9.9e-09 34.6 0.3 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|389848580|ref|YP_006350818.1| - 0.00027 20.2 0.3 0.00062 19.0 0.2 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|389848580|ref|YP_006350818.1| - 0.0012 18.9 0.3 0.0051 16.9 0.1 2.2 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|389848580|ref|YP_006350818.1| - 0.02 14.8 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|389848580|ref|YP_006350818.1| - 0.057 13.1 0.0 0.1 12.3 0.0 1.4 1 1 0 1 1 1 0 DDE superfamily endonuclease DUF2384 PF09722.5 gi|389848580|ref|YP_006350818.1| - 0.082 12.7 0.2 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) Phage_integrase PF00589.17 gi|389848581|ref|YP_006350819.1| - 1e-10 41.5 0.0 1.9e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|389848581|ref|YP_006350819.1| - 0.048 13.8 0.4 0.23 11.6 0.3 2.3 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain HTH_23 PF13384.1 gi|389848581|ref|YP_006350819.1| - 2.2 8.0 6.3 25 4.7 0.1 3.8 5 0 0 5 5 5 0 Homeodomain-like domain Cdc6_C PF09079.6 gi|389848582|ref|YP_006350820.1| - 2e-13 49.8 0.0 5.2e-13 48.5 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|389848582|ref|YP_006350820.1| - 1.4e-10 41.4 4.1 2.2e-10 40.8 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389848582|ref|YP_006350820.1| - 3.7e-10 40.0 0.1 1.7e-09 37.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|389848582|ref|YP_006350820.1| - 0.00017 21.7 0.1 0.0051 17.0 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.1 gi|389848582|ref|YP_006350820.1| - 0.00043 19.0 2.7 0.1 11.2 0.3 2.5 3 0 0 3 3 3 2 AAA domain NACHT PF05729.7 gi|389848582|ref|YP_006350820.1| - 0.0012 18.5 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.8 gi|389848582|ref|YP_006350820.1| - 0.0083 15.0 0.0 0.016 14.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Dak2 PF02734.12 gi|389848582|ref|YP_006350820.1| - 0.0097 15.5 0.9 0.018 14.7 0.6 1.5 1 0 0 1 1 1 1 DAK2 domain Arch_ATPase PF01637.13 gi|389848582|ref|YP_006350820.1| - 0.019 14.6 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase KAP_NTPase PF07693.9 gi|389848582|ref|YP_006350820.1| - 0.02 13.9 0.0 0.064 12.2 0.0 1.8 1 1 1 2 2 2 0 KAP family P-loop domain RuvB_N PF05496.7 gi|389848582|ref|YP_006350820.1| - 0.023 13.7 0.0 0.57 9.1 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|389848582|ref|YP_006350820.1| - 0.029 13.2 0.0 0.049 12.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PCP_red PF08369.5 gi|389848582|ref|YP_006350820.1| - 0.085 12.7 2.1 0.22 11.3 0.4 2.6 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit RNA_helicase PF00910.17 gi|389848582|ref|YP_006350820.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|389848582|ref|YP_006350820.1| - 0.15 12.3 1.8 0.67 10.2 0.0 2.8 4 0 0 4 4 3 0 AAA domain FlgM PF04316.8 gi|389848582|ref|YP_006350820.1| - 0.78 9.7 5.0 0.91 9.5 0.3 2.7 1 1 1 2 2 2 0 Anti-sigma-28 factor, FlgM PQQ_2 PF13360.1 gi|389848583|ref|YP_006350821.1| - 5.6e-41 140.5 8.1 4.7e-29 101.5 1.9 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389848583|ref|YP_006350821.1| - 1.7e-19 68.2 0.5 4.2e-05 22.8 0.0 5.8 5 0 0 5 5 5 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389848583|ref|YP_006350821.1| - 6.5e-19 67.5 19.7 3.3e-05 23.9 0.0 7.4 8 0 0 8 8 8 6 PQQ-like domain DDE_Tnp_1 PF01609.16 gi|389848584|ref|YP_006350822.1| - 8.6e-05 22.1 0.1 9.6e-05 22.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain Na_K-ATPase PF00287.13 gi|389848584|ref|YP_006350822.1| - 0.023 13.4 0.1 0.028 13.1 0.1 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain DDE_Tnp_1_4 PF13701.1 gi|389848584|ref|YP_006350822.1| - 0.076 11.1 0.2 0.083 11.0 0.2 1.0 1 0 0 1 1 1 0 Transposase DDE domain group 1 HTH_33 PF13592.1 gi|389848585|ref|YP_006350823.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix