# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|389845494|ref|YP_006347733.1| - 8.3e-28 95.9 0.1 2.3e-27 94.5 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|389845494|ref|YP_006347733.1| - 1.7e-12 47.7 0.2 6.7e-11 42.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389845494|ref|YP_006347733.1| - 2.3e-09 37.5 0.3 3.1e-08 33.8 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389845494|ref|YP_006347733.1| - 4e-08 33.5 0.8 1.3e-06 28.6 0.6 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|389845494|ref|YP_006347733.1| - 7.8e-06 25.7 0.7 4.2e-05 23.3 0.5 2.0 1 1 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|389845494|ref|YP_006347733.1| - 0.00054 18.9 0.0 0.00092 18.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|389845494|ref|YP_006347733.1| - 0.0026 17.2 0.0 0.0064 15.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|389845494|ref|YP_006347733.1| - 0.0028 18.4 0.0 0.012 16.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|389845494|ref|YP_006347733.1| - 0.0031 16.5 0.0 0.0071 15.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|389845494|ref|YP_006347733.1| - 0.0041 16.0 0.0 0.0073 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|389845494|ref|YP_006347733.1| - 0.0041 16.0 0.0 0.0068 15.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_2 PF07724.9 gi|389845494|ref|YP_006347733.1| - 0.0043 16.9 0.0 0.028 14.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|389845494|ref|YP_006347733.1| - 0.0057 16.9 0.1 0.017 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|389845494|ref|YP_006347733.1| - 0.015 14.7 3.2 0.09 12.2 0.7 2.8 2 1 0 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|389845494|ref|YP_006347733.1| - 0.016 15.4 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.9 gi|389845494|ref|YP_006347733.1| - 0.028 13.4 0.1 0.093 11.7 0.1 1.8 1 1 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.1 gi|389845494|ref|YP_006347733.1| - 0.05 13.1 0.1 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|389845494|ref|YP_006347733.1| - 0.059 12.8 2.6 0.68 9.3 1.8 2.2 1 1 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|389845494|ref|YP_006347733.1| - 0.13 11.9 0.0 0.45 10.1 0.0 1.9 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|389845494|ref|YP_006347733.1| - 0.14 12.3 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.18 gi|662859274|ref|YP_006347734.2| - 0.0006 19.4 0.3 0.0018 17.8 0.2 1.8 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|662859275|ref|YP_006347735.2| - 4.5e-15 55.4 0.0 7.4e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|662859275|ref|YP_006347735.2| - 2.8e-13 49.9 0.5 6.2e-13 48.8 0.4 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|662859275|ref|YP_006347735.2| - 5.4e-07 29.2 2.8 1.2e-06 28.0 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|662859275|ref|YP_006347735.2| - 0.0039 17.0 0.0 0.0081 15.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Oxidored_FMN PF00724.15 gi|389845497|ref|YP_006347736.1| - 8.9e-68 228.7 0.0 1e-67 228.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|389845497|ref|YP_006347736.1| - 6e-06 25.6 0.0 1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|389845497|ref|YP_006347736.1| - 0.00098 18.0 0.0 0.0042 15.9 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|389845497|ref|YP_006347736.1| - 0.038 12.9 0.0 0.088 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Amidohydro_2 PF04909.9 gi|389845497|ref|YP_006347736.1| - 0.071 12.6 4.1 0.063 12.8 1.5 1.8 2 1 0 2 2 2 0 Amidohydrolase Zip PF02535.17 gi|389845498|ref|YP_006347737.1| - 3.7e-22 78.7 16.4 6.6e-19 68.0 11.4 2.1 1 1 0 1 1 1 1 ZIP Zinc transporter DUF2227 PF09988.4 gi|389845498|ref|YP_006347737.1| - 0.071 12.7 0.0 0.46 10.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized metal-binding protein (DUF2227) Imm26 PF15572.1 gi|389845498|ref|YP_006347737.1| - 0.14 12.3 0.0 12 6.0 0.0 2.7 2 1 0 3 3 3 0 Immunity protein 26 E1-E2_ATPase PF00122.15 gi|389845498|ref|YP_006347737.1| - 2 7.3 6.1 0.27 10.2 0.5 2.3 2 1 0 2 2 2 0 E1-E2 ATPase AA_kinase PF00696.23 gi|389845500|ref|YP_006347739.1| - 1.8e-48 165.1 4.7 2.8e-48 164.5 1.6 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|389845500|ref|YP_006347739.1| - 3.4e-17 61.7 0.2 1.3e-10 40.5 0.1 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|389845500|ref|YP_006347739.1| - 2e-15 55.8 1.1 3e-07 29.7 0.0 3.0 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|389845500|ref|YP_006347739.1| - 4.8e-05 23.6 0.2 0.5 10.7 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|389845500|ref|YP_006347739.1| - 0.011 15.4 0.3 0.42 10.3 0.1 2.9 2 0 0 2 2 2 0 ACT domain Beta_elim_lyase PF01212.16 gi|662859276|ref|YP_006347740.2| - 2.1e-69 233.8 0.0 3e-69 233.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Metallophos_2 PF12850.2 gi|389845502|ref|YP_006347741.1| - 1.6e-31 109.2 0.0 2e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|389845502|ref|YP_006347741.1| - 1.1e-11 44.5 0.0 1.8e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|389845502|ref|YP_006347741.1| - 0.11 11.6 0.0 1.5 7.9 0.0 2.0 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily IMP_cyclohyd PF07826.6 gi|389845503|ref|YP_006347742.1| - 1.9e-63 213.4 0.2 2.1e-63 213.2 0.2 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.5 gi|389845504|ref|YP_006347743.1| - 6.2e-16 58.4 0.0 7.6e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DEAD PF00270.24 gi|389845505|ref|YP_006347744.1| - 1.8e-26 92.6 0.0 2.9e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|389845505|ref|YP_006347744.1| - 6.3e-09 35.8 2.0 1.6e-08 34.5 0.6 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|389845505|ref|YP_006347744.1| - 4.2e-07 29.7 0.0 8.7e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|389845505|ref|YP_006347744.1| - 0.00031 20.2 0.0 0.00076 18.9 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|389845505|ref|YP_006347744.1| - 0.00085 19.1 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Fer4_15 PF13459.1 gi|389845506|ref|YP_006347745.1| - 7.5e-15 55.2 4.2 9.2e-15 54.9 2.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|389845506|ref|YP_006347745.1| - 0.0031 17.8 3.5 0.0097 16.2 2.4 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|389845506|ref|YP_006347745.1| - 0.064 13.0 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|389845506|ref|YP_006347745.1| - 0.066 13.0 0.4 0.58 10.0 0.3 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|389845506|ref|YP_006347745.1| - 0.067 12.8 3.7 0.99 9.1 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389845506|ref|YP_006347745.1| - 0.096 12.5 4.2 1.3 8.9 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|389845506|ref|YP_006347745.1| - 0.099 13.0 0.2 15 6.0 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain KaiC PF06745.8 gi|389845508|ref|YP_006347747.1| - 2.4e-05 23.5 0.5 3.1e-05 23.2 0.3 1.1 1 0 0 1 1 1 1 KaiC DUF2391 PF09622.5 gi|389845509|ref|YP_006347748.1| - 3e-06 26.6 0.9 5.2e-06 25.8 0.6 1.5 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF3483 PF11982.3 gi|389845509|ref|YP_006347748.1| - 0.033 13.4 3.4 0.042 13.1 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) DUF296 PF03479.10 gi|389845509|ref|YP_006347748.1| - 0.086 12.4 0.3 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF296) Methyltransf_11 PF08241.7 gi|389845510|ref|YP_006347749.1| - 1e-24 86.7 0.0 1.9e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389845510|ref|YP_006347749.1| - 8.8e-18 64.3 0.0 1.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389845510|ref|YP_006347749.1| - 3.1e-13 49.7 0.1 4.1e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389845510|ref|YP_006347749.1| - 4e-13 49.9 0.0 7.9e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389845510|ref|YP_006347749.1| - 2.6e-12 46.9 0.0 2.4e-11 43.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389845510|ref|YP_006347749.1| - 4e-10 40.0 0.0 6e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389845510|ref|YP_006347749.1| - 4.1e-10 39.1 0.0 8.2e-10 38.1 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|389845510|ref|YP_006347749.1| - 1.9e-08 34.3 0.0 4.3e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|389845510|ref|YP_006347749.1| - 0.00011 21.4 0.2 0.00017 20.8 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase MetW PF07021.7 gi|389845510|ref|YP_006347749.1| - 0.00022 20.6 0.0 0.00037 19.9 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|389845510|ref|YP_006347749.1| - 0.00036 19.6 0.0 0.00049 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|389845510|ref|YP_006347749.1| - 0.00099 17.8 0.0 0.0016 17.1 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|389845510|ref|YP_006347749.1| - 0.0021 17.6 0.0 0.0061 16.1 0.0 1.7 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF2934 PF11154.3 gi|389845510|ref|YP_006347749.1| - 0.0055 16.0 1.8 0.014 14.7 1.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2934) N6_N4_Mtase PF01555.13 gi|389845510|ref|YP_006347749.1| - 0.009 15.5 0.0 0.69 9.3 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_8 PF05148.10 gi|389845510|ref|YP_006347749.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|389845510|ref|YP_006347749.1| - 0.024 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|389845510|ref|YP_006347749.1| - 0.035 14.9 0.2 0.12 13.2 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain ABC_tran PF00005.22 gi|389845511|ref|YP_006347750.1| - 6.2e-35 120.4 0.0 1.1e-34 119.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389845511|ref|YP_006347750.1| - 2e-15 56.5 1.4 5.5e-15 55.1 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|389845511|ref|YP_006347750.1| - 2.8e-09 37.3 0.0 3.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|389845511|ref|YP_006347750.1| - 7.6e-07 29.1 0.4 2e-05 24.5 0.0 2.8 2 1 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|389845511|ref|YP_006347750.1| - 0.00033 20.7 0.0 0.001 19.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389845511|ref|YP_006347750.1| - 0.0017 18.3 3.4 0.0021 18.0 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|389845511|ref|YP_006347750.1| - 0.0026 17.0 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|389845511|ref|YP_006347750.1| - 0.0034 16.8 0.1 0.034 13.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389845511|ref|YP_006347750.1| - 0.0042 17.2 0.1 0.075 13.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|389845511|ref|YP_006347750.1| - 0.02 13.6 0.0 0.027 13.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|389845511|ref|YP_006347750.1| - 0.046 13.6 0.3 0.49 10.3 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|389845511|ref|YP_006347750.1| - 0.056 13.2 0.8 0.33 10.7 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain ABC_ATPase PF09818.4 gi|389845511|ref|YP_006347750.1| - 0.068 11.7 0.5 0.4 9.1 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|389845511|ref|YP_006347750.1| - 0.069 13.4 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|389845511|ref|YP_006347750.1| - 0.086 11.8 0.0 2.2 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|389845511|ref|YP_006347750.1| - 0.1 12.1 0.1 0.21 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|389845511|ref|YP_006347750.1| - 0.11 12.4 0.7 0.88 9.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|389845511|ref|YP_006347750.1| - 0.16 11.1 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|389845511|ref|YP_006347750.1| - 0.18 11.6 0.0 1.6 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|389845512|ref|YP_006347751.1| - 4.6e-25 88.2 32.5 3.7e-15 55.9 8.8 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|662859277|ref|YP_006347752.2| - 4.2e-25 88.4 0.0 8.5e-25 87.4 0.0 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|662859277|ref|YP_006347752.2| - 1.1e-23 84.4 1.3 1.5e-23 83.9 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|662859277|ref|YP_006347752.2| - 1.4e-12 47.9 2.5 2.2e-12 47.3 1.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|662859277|ref|YP_006347752.2| - 9.4e-09 35.2 0.0 1.5e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|662859277|ref|YP_006347752.2| - 0.00066 19.4 6.4 0.00066 19.4 4.4 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Rhodanese PF00581.15 gi|389845514|ref|YP_006347753.1| - 3.5e-38 130.4 0.0 1e-19 70.9 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|662859278|ref|YP_006347754.2| - 1.3e-36 125.4 0.2 1.5e-19 70.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain SCFA_trans PF02667.9 gi|389845516|ref|YP_006347755.1| - 3.3e-132 441.4 17.6 6.1e-132 440.5 12.2 1.4 1 1 0 1 1 1 1 Short chain fatty acid transporter DUF3278 PF11683.3 gi|389845516|ref|YP_006347755.1| - 0.09 12.7 0.0 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) Rubrerythrin PF02915.12 gi|389845517|ref|YP_006347756.1| - 0.017 15.4 1.0 1.9 8.7 0.0 2.5 2 1 1 3 3 3 0 Rubrerythrin DUF2884 PF11101.3 gi|389845518|ref|YP_006347757.1| - 0.0013 18.1 0.3 0.0014 18.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2884) Exonuc_VII_L PF02601.10 gi|389845518|ref|YP_006347757.1| - 0.061 12.5 0.3 0.069 12.3 0.2 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF552 PF04472.7 gi|389845518|ref|YP_006347757.1| - 0.13 12.1 0.0 8 6.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF552) HisKA_3 PF07730.8 gi|389845518|ref|YP_006347757.1| - 1.3 9.3 4.7 1.8 9.0 0.6 2.1 1 1 1 2 2 2 0 Histidine kinase DUF883 PF05957.8 gi|389845518|ref|YP_006347757.1| - 1.8 9.0 4.4 11 6.5 0.2 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) UvrB PF12344.3 gi|389845519|ref|YP_006347758.1| - 1.6e-21 75.5 0.6 3e-21 74.6 0.4 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|389845519|ref|YP_006347758.1| - 5.4e-14 51.8 0.9 1.1e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|389845519|ref|YP_006347758.1| - 3.4e-09 35.9 6.4 3.4e-09 35.9 4.5 3.4 3 0 0 3 3 3 1 UvrB/uvrC motif ResIII PF04851.10 gi|389845519|ref|YP_006347758.1| - 1.1e-08 35.1 0.0 3.1e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|389845519|ref|YP_006347758.1| - 1.9e-06 27.4 0.3 0.00045 19.7 0.0 3.0 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|389845519|ref|YP_006347758.1| - 0.00068 19.3 0.8 1 9.1 0.0 3.2 4 0 0 4 4 4 2 Part of AAA domain UB2H PF14814.1 gi|389845519|ref|YP_006347758.1| - 0.0017 18.0 0.0 0.0059 16.3 0.0 2.0 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|389845519|ref|YP_006347758.1| - 0.0065 16.3 0.0 0.024 14.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|389845519|ref|YP_006347758.1| - 0.011 15.3 0.2 0.24 10.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|389845519|ref|YP_006347758.1| - 0.045 13.9 0.1 7.1 6.8 0.0 3.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) TauE PF01925.14 gi|389845520|ref|YP_006347759.1| - 2.3e-30 105.8 21.0 2.3e-30 105.8 14.6 1.6 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0016 PF01169.14 gi|389845520|ref|YP_006347759.1| - 8.2 6.6 14.0 8.7 6.5 1.9 3.6 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 Usp PF00582.21 gi|389845521|ref|YP_006347760.1| - 2e-30 105.8 2.3 2.3e-30 105.6 1.6 1.1 1 0 0 1 1 1 1 Universal stress protein family Ribonuc_red_lgC PF02867.10 gi|389845522|ref|YP_006347761.1| - 3.9e-197 656.0 0.0 4.7e-197 655.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|389845522|ref|YP_006347761.1| - 1.4e-21 76.0 0.1 3.7e-21 74.7 0.1 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.16 gi|389845523|ref|YP_006347762.1| - 3.9e-45 154.0 0.0 6.7e-45 153.2 0.0 1.3 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.3 gi|389845523|ref|YP_006347762.1| - 0.13 11.1 0.1 0.39 9.5 0.0 1.8 2 0 0 2 2 2 0 P-aminobenzoate N-oxygenase AurF 4HBT PF03061.17 gi|389845524|ref|YP_006347763.1| - 5.3e-19 68.1 0.2 7.4e-19 67.6 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|389845524|ref|YP_006347763.1| - 7.5e-05 23.1 0.0 9.3e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.14 gi|389845524|ref|YP_006347763.1| - 0.0042 16.4 0.0 0.0066 15.8 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.1 gi|389845524|ref|YP_006347763.1| - 0.048 13.3 0.1 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Band_7 PF01145.20 gi|389845525|ref|YP_006347764.1| - 9e-36 123.4 1.9 9e-36 123.4 1.3 1.9 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|389845525|ref|YP_006347764.1| - 0.019 14.5 0.0 0.037 13.5 0.0 1.5 1 1 0 1 1 1 0 SPFH domain-Band 7 family YkyA PF10368.4 gi|389845525|ref|YP_006347764.1| - 0.11 11.8 1.3 0.17 11.2 0.9 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein TcpE PF12648.2 gi|662859279|ref|YP_006347765.2| - 0.19 11.8 2.2 0.22 11.6 1.6 1.2 1 0 0 1 1 1 0 TcpE family 2_5_RNA_ligase2 PF13563.1 gi|389845528|ref|YP_006347767.1| - 7.1e-18 64.7 0.0 1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|389845528|ref|YP_006347767.1| - 1.3e-08 34.6 0.0 0.00042 20.2 0.0 2.4 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|389845528|ref|YP_006347767.1| - 4.5e-05 23.2 0.0 5.2e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain p450 PF00067.17 gi|389845529|ref|YP_006347768.1| - 1e-88 297.9 0.0 1.2e-88 297.6 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 YjeF_N PF03853.10 gi|389845529|ref|YP_006347768.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus PEMT PF04191.8 gi|389845530|ref|YP_006347769.1| - 1.6e-16 60.3 0.2 1.6e-16 60.3 0.1 2.1 2 1 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.9 gi|389845530|ref|YP_006347769.1| - 3e-06 27.3 0.4 7.3e-06 26.1 0.1 1.9 1 1 1 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Steroid_dh PF02544.11 gi|389845530|ref|YP_006347769.1| - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase YfhO PF09586.5 gi|389845530|ref|YP_006347769.1| - 0.0034 15.4 1.9 0.0037 15.3 1.3 1.1 1 0 0 1 1 1 1 Bacterial membrane protein YfhO PRA1 PF03208.14 gi|389845530|ref|YP_006347769.1| - 0.22 10.8 0.0 0.22 10.8 0.0 2.5 3 0 0 3 3 3 0 PRA1 family protein DPM2 PF07297.7 gi|389845530|ref|YP_006347769.1| - 0.3 11.3 0.0 0.3 11.3 0.0 2.8 3 1 0 3 3 3 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) EamA PF00892.15 gi|389845530|ref|YP_006347769.1| - 2.8 7.9 12.4 0.55 10.2 2.4 2.9 2 1 1 3 3 3 0 EamA-like transporter family Helicase_C_2 PF13307.1 gi|389845531|ref|YP_006347770.1| - 1.7e-32 112.7 0.0 5.1e-32 111.1 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|389845531|ref|YP_006347770.1| - 9.6e-22 77.2 0.2 2.6e-21 75.7 0.1 1.7 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|389845531|ref|YP_006347770.1| - 7.1e-10 38.6 2.2 3.7e-07 29.8 0.8 3.4 2 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|389845531|ref|YP_006347770.1| - 3.2e-07 30.3 1.6 5.1e-06 26.4 1.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|389845531|ref|YP_006347770.1| - 0.00058 19.0 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 KaiC TrwB_AAD_bind PF10412.4 gi|389845531|ref|YP_006347770.1| - 0.0025 16.4 0.1 0.0046 15.6 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.11 gi|389845531|ref|YP_006347770.1| - 0.0038 16.4 0.0 0.0083 15.3 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Hpt PF01627.18 gi|389845531|ref|YP_006347770.1| - 0.004 17.1 1.8 3.6 7.6 0.6 3.3 2 0 0 2 2 2 1 Hpt domain AAA_22 PF13401.1 gi|389845531|ref|YP_006347770.1| - 0.0048 17.0 2.6 0.054 13.6 0.4 2.5 1 1 1 2 2 2 1 AAA domain Zot PF05707.7 gi|389845531|ref|YP_006347770.1| - 0.0051 16.2 0.2 0.86 9.0 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|389845531|ref|YP_006347770.1| - 0.0053 15.6 0.0 0.0087 14.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|389845531|ref|YP_006347770.1| - 0.0093 15.6 0.1 0.03 14.0 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|389845531|ref|YP_006347770.1| - 0.013 14.4 1.7 0.33 9.8 0.1 2.5 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|389845531|ref|YP_006347770.1| - 0.017 15.1 1.0 0.15 12.0 0.7 2.4 1 1 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.3 gi|389845531|ref|YP_006347770.1| - 0.022 12.1 1.8 0.032 11.5 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_30 PF13604.1 gi|389845531|ref|YP_006347770.1| - 0.025 14.1 0.2 0.052 13.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|389845531|ref|YP_006347770.1| - 0.041 13.3 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|389845531|ref|YP_006347770.1| - 0.067 12.5 0.3 0.53 9.6 0.0 2.6 3 1 0 3 3 2 0 AAA domain DAP3 PF10236.4 gi|389845531|ref|YP_006347770.1| - 0.076 11.9 0.1 0.16 10.8 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.24 gi|389845531|ref|YP_006347770.1| - 0.22 11.7 3.1 8 6.6 0.7 2.9 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) DUF1440 PF07274.7 gi|389845532|ref|YP_006347771.1| - 0.013 15.5 4.8 0.018 15.0 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) YqhR PF11085.3 gi|389845532|ref|YP_006347771.1| - 0.39 10.2 8.1 0.62 9.5 5.6 1.4 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF3147 PF11345.3 gi|389845532|ref|YP_006347771.1| - 0.91 9.5 14.2 0.8 9.7 7.7 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3147) DUF1129 PF06570.6 gi|389845532|ref|YP_006347771.1| - 3.6 6.8 9.5 3.6 6.8 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) OTCace_N PF02729.16 gi|389845533|ref|YP_006347772.1| - 2.9e-47 159.9 0.0 3.9e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|389845533|ref|YP_006347772.1| - 3e-45 153.9 0.0 5.3e-45 153.1 0.0 1.4 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.23 gi|389845534|ref|YP_006347773.1| - 1.2e-26 93.3 0.0 1.9e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|389845534|ref|YP_006347773.1| - 2.6e-05 23.9 0.0 4.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|389845534|ref|YP_006347773.1| - 0.0065 16.2 0.2 0.05 13.3 0.1 2.4 2 1 0 2 2 2 1 Peptidase family M28 Aminotran_3 PF00202.16 gi|389845535|ref|YP_006347774.1| - 2e-101 339.2 0.2 2.4e-101 338.9 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|389845535|ref|YP_006347774.1| - 0.0022 16.3 0.0 0.013 13.7 0.0 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme AA_kinase PF00696.23 gi|389845536|ref|YP_006347775.1| - 7.1e-31 107.5 2.2 9.3e-31 107.2 1.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|389845537|ref|YP_006347776.1| - 9.7e-28 96.9 0.0 1.7e-27 96.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|389845537|ref|YP_006347776.1| - 2.1e-06 27.7 0.0 9.8e-06 25.5 0.0 2.0 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|389845537|ref|YP_006347776.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|389845538|ref|YP_006347777.1| - 8.7e-42 142.7 0.0 1.3e-41 142.2 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|389845538|ref|YP_006347777.1| - 2.5e-17 63.1 0.1 4.9e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|389845538|ref|YP_006347777.1| - 8.9e-12 44.4 0.0 1.6e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|389845538|ref|YP_006347777.1| - 9.9e-09 34.3 0.0 1.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|389845538|ref|YP_006347777.1| - 1.3e-08 34.8 0.0 2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|389845538|ref|YP_006347777.1| - 1.6e-06 27.5 0.0 3.4e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|389845538|ref|YP_006347777.1| - 2.3e-06 27.0 0.1 2.9e-05 23.5 0.0 2.4 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|389845538|ref|YP_006347777.1| - 1.4e-05 24.4 0.0 0.00012 21.4 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|389845538|ref|YP_006347777.1| - 0.096 12.0 0.0 0.41 10.0 0.0 1.9 1 1 0 2 2 2 0 D-ala D-ala ligase C-terminus Lyase_1 PF00206.15 gi|389845540|ref|YP_006347779.1| - 5.5e-56 190.0 0.0 1.1e-55 189.0 0.0 1.5 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|389845540|ref|YP_006347779.1| - 9.1e-12 44.8 1.6 5.4e-11 42.4 1.1 2.5 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.14 gi|389845541|ref|YP_006347780.1| - 4.9e-148 493.3 0.0 5.7e-148 493.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|389845541|ref|YP_006347780.1| - 6.8e-05 22.2 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|389845541|ref|YP_006347780.1| - 8.3e-05 22.1 0.2 0.00024 20.6 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase NAD_synthase PF02540.12 gi|389845541|ref|YP_006347780.1| - 0.00024 20.0 0.0 0.00038 19.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|389845541|ref|YP_006347780.1| - 0.0023 16.5 0.0 0.0035 15.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Na_Ca_ex PF01699.19 gi|389845542|ref|YP_006347781.1| - 2.2e-28 98.6 25.2 2.5e-14 53.0 4.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_H_Exchanger PF00999.16 gi|389845543|ref|YP_006347782.1| - 8.9e-51 172.5 46.7 1.1e-50 172.2 32.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|389845544|ref|YP_006347783.1| - 1.2e-17 63.2 0.6 2.4e-17 62.2 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain tRNA-synt_2b PF00587.20 gi|389845546|ref|YP_006347785.1| - 4.6e-54 182.5 0.0 6.2e-54 182.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|389845546|ref|YP_006347785.1| - 3.7e-23 81.2 0.1 9.3e-23 79.9 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|389845546|ref|YP_006347785.1| - 0.98 8.7 8.2 1.1 8.6 0.6 2.5 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389845546|ref|YP_006347785.1| - 1.5 8.4 3.6 2.1 7.9 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain CBS PF00571.23 gi|389845547|ref|YP_006347786.1| - 3.2e-34 116.4 14.2 7.1e-11 41.7 0.5 4.1 4 0 0 4 4 4 4 CBS domain TusA PF01206.12 gi|389845547|ref|YP_006347786.1| - 0.014 15.0 0.0 0.038 13.5 0.0 1.8 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF2910 PF11139.3 gi|389845549|ref|YP_006347788.1| - 0.004 16.3 3.3 0.0057 15.8 2.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) DUF3995 PF13160.1 gi|389845549|ref|YP_006347788.1| - 0.2 11.7 4.8 0.096 12.7 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) DUF3093 PF11292.3 gi|389845549|ref|YP_006347788.1| - 1.1 9.0 4.1 2.8 7.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3093) DUF543 PF04418.7 gi|389845549|ref|YP_006347788.1| - 8.9 6.3 6.0 2.5 8.1 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF543) ABC_tran PF00005.22 gi|389845550|ref|YP_006347789.1| - 2.2e-35 121.9 0.1 8.2e-35 120.0 0.0 1.9 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|389845550|ref|YP_006347789.1| - 2.7e-17 62.8 0.4 5.2e-17 61.9 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389845550|ref|YP_006347789.1| - 5.9e-08 33.0 0.1 7.2e-05 22.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389845550|ref|YP_006347789.1| - 2.9e-05 23.4 0.0 5.4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389845550|ref|YP_006347789.1| - 0.00039 20.5 0.9 0.004 17.3 0.4 2.5 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|389845550|ref|YP_006347789.1| - 0.00067 18.8 0.2 0.0012 18.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|389845550|ref|YP_006347789.1| - 0.0046 16.9 1.6 0.0076 16.2 0.4 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|389845550|ref|YP_006347789.1| - 0.0089 15.7 0.2 0.9 9.2 0.0 3.0 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|389845550|ref|YP_006347789.1| - 0.02 14.3 0.3 4.5 6.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|389845550|ref|YP_006347789.1| - 0.023 14.2 0.3 0.043 13.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|389845550|ref|YP_006347789.1| - 0.042 14.1 0.1 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|389845550|ref|YP_006347789.1| - 0.051 13.0 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|389845550|ref|YP_006347789.1| - 0.089 12.6 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|389845550|ref|YP_006347789.1| - 0.1 11.9 0.2 0.42 9.9 0.1 1.9 2 1 0 2 2 2 0 AAA-like domain PAS_7 PF12860.2 gi|389845550|ref|YP_006347789.1| - 0.11 12.4 0.1 1 9.3 0.0 2.2 2 0 0 2 2 2 0 PAS fold AAA PF00004.24 gi|389845550|ref|YP_006347789.1| - 0.12 12.5 0.0 0.94 9.6 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|389845550|ref|YP_006347789.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|389845550|ref|YP_006347789.1| - 0.14 12.1 1.6 0.44 10.4 0.0 2.6 3 1 0 3 3 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|389845550|ref|YP_006347789.1| - 0.15 11.4 0.9 1.1 8.6 0.4 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|389845551|ref|YP_006347790.1| - 2.2e-30 105.7 0.0 3.2e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389845551|ref|YP_006347790.1| - 2.5e-18 66.1 0.7 5.4e-18 65.1 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389845551|ref|YP_006347790.1| - 5.2e-08 33.1 0.0 2.4e-05 24.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389845551|ref|YP_006347790.1| - 0.00026 20.3 0.0 0.00067 18.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|389845551|ref|YP_006347790.1| - 0.007 15.8 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|389845551|ref|YP_006347790.1| - 0.0098 15.8 0.1 0.022 14.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389845551|ref|YP_006347790.1| - 0.013 15.6 1.0 0.49 10.5 0.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389845551|ref|YP_006347790.1| - 0.045 13.2 0.1 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|389845551|ref|YP_006347790.1| - 0.062 12.7 0.1 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|389845551|ref|YP_006347790.1| - 0.064 12.6 2.5 0.17 11.3 0.4 2.2 3 1 0 3 3 3 0 AAA-like domain DUF87 PF01935.12 gi|389845551|ref|YP_006347790.1| - 0.065 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|389845551|ref|YP_006347790.1| - 0.097 12.0 0.1 0.35 10.2 0.0 1.9 1 1 1 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|389845551|ref|YP_006347790.1| - 0.13 11.7 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family BPD_transp_1 PF00528.17 gi|389845552|ref|YP_006347791.1| - 9.6e-16 57.8 15.7 9.6e-16 57.8 10.8 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389845552|ref|YP_006347791.1| - 1.5e-06 27.4 0.0 1.5e-06 27.4 0.0 3.6 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|389845553|ref|YP_006347792.1| - 4.9e-34 117.4 10.3 4.9e-34 117.4 7.1 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|389845554|ref|YP_006347793.1| - 7.3e-71 238.9 3.0 1.1e-70 238.3 2.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|389845554|ref|YP_006347793.1| - 5e-05 22.9 6.8 5e-05 22.9 4.7 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF296 PF03479.10 gi|389845556|ref|YP_006347795.1| - 9.6e-27 92.9 0.0 1.1e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) CAP59_mtransfer PF11735.3 gi|389845556|ref|YP_006347795.1| - 0.016 14.4 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 PolC_DP2 PF03833.8 gi|389845557|ref|YP_006347796.1| - 0 1317.1 0.0 0 1317.1 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.1 gi|389845557|ref|YP_006347796.1| - 1.4e-13 50.8 0.0 6.1e-13 48.8 0.0 2.2 2 0 0 2 2 2 1 LAGLIDADG-like domain Phage_CI_repr PF07022.8 gi|389845557|ref|YP_006347796.1| - 0.0016 18.4 0.0 0.0049 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Intein_splicing PF14890.1 gi|389845557|ref|YP_006347796.1| - 0.06 12.2 0.0 0.45 9.3 0.0 2.3 2 1 0 2 2 2 0 Intein splicing domain HTH_23 PF13384.1 gi|389845557|ref|YP_006347796.1| - 0.1 12.2 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_ner PF04546.8 gi|389845557|ref|YP_006347796.1| - 0.23 11.0 7.9 0.62 9.6 5.5 1.7 1 0 0 1 1 1 0 Sigma-70, non-essential region DZR PF12773.2 gi|389845557|ref|YP_006347796.1| - 3.5 7.5 17.3 20 5.1 7.1 3.1 2 1 0 2 2 2 0 Double zinc ribbon Nop14 PF04147.7 gi|389845557|ref|YP_006347796.1| - 6.3 4.5 6.4 9.3 4.0 4.4 1.1 1 0 0 1 1 1 0 Nop14-like family Ribosomal_L32p PF01783.18 gi|389845557|ref|YP_006347796.1| - 8.9 6.5 5.3 12 6.1 2.2 2.2 2 1 0 2 2 2 0 Ribosomal L32p protein family TrkH PF02386.11 gi|389845558|ref|YP_006347797.1| - 7.9e-62 208.8 20.8 4e-61 206.5 10.6 2.1 2 0 0 2 2 2 2 Cation transport protein DUF1449 PF07290.6 gi|389845558|ref|YP_006347797.1| - 0.021 14.1 0.4 0.1 11.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1449) TrkA_N PF02254.13 gi|389845559|ref|YP_006347798.1| - 1.1e-28 99.5 0.9 1.9e-28 98.7 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|389845559|ref|YP_006347798.1| - 2e-15 56.1 0.9 2.1e-14 52.8 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|389845559|ref|YP_006347798.1| - 7.3e-07 29.5 0.9 1.7e-06 28.3 0.2 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|389845559|ref|YP_006347798.1| - 4.9e-06 26.9 0.1 8.3e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|389845559|ref|YP_006347798.1| - 1.1e-05 24.5 0.4 1.9e-05 23.8 0.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|389845559|ref|YP_006347798.1| - 0.00013 21.9 0.5 0.00028 20.9 0.2 1.7 2 0 0 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|389845559|ref|YP_006347798.1| - 0.00015 22.1 0.0 0.0039 17.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|389845559|ref|YP_006347798.1| - 0.00024 20.7 0.2 0.00035 20.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|389845559|ref|YP_006347798.1| - 0.0003 20.9 0.1 0.00063 19.8 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|389845559|ref|YP_006347798.1| - 0.00087 18.6 0.3 0.0042 16.3 0.1 2.0 1 1 0 2 2 2 1 NmrA-like family NAD_binding_2 PF03446.10 gi|389845559|ref|YP_006347798.1| - 0.0015 18.3 0.1 0.0032 17.3 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PEP-utilizers PF00391.18 gi|389845559|ref|YP_006347798.1| - 0.0021 17.6 0.4 0.017 14.7 0.0 2.4 2 1 0 2 2 2 1 PEP-utilising enzyme, mobile domain UDPG_MGDP_dh_N PF03721.9 gi|389845559|ref|YP_006347798.1| - 0.0032 16.8 0.4 0.065 12.6 0.0 2.2 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|389845559|ref|YP_006347798.1| - 0.0036 17.5 0.3 0.011 15.9 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Peripla_BP_3 PF13377.1 gi|389845559|ref|YP_006347798.1| - 0.0071 16.3 0.2 0.0096 15.9 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain ADH_zinc_N PF00107.21 gi|389845559|ref|YP_006347798.1| - 0.008 15.7 0.3 0.12 11.9 0.2 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|389845559|ref|YP_006347798.1| - 0.0086 16.5 0.2 0.025 15.0 0.1 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|389845559|ref|YP_006347798.1| - 0.013 14.7 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|389845559|ref|YP_006347798.1| - 0.034 13.8 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|389845559|ref|YP_006347798.1| - 0.046 13.1 0.1 0.066 12.6 0.1 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FMN_dh PF01070.13 gi|389845559|ref|YP_006347798.1| - 0.048 12.5 0.7 4.6 5.9 0.1 2.0 1 1 1 2 2 2 0 FMN-dependent dehydrogenase CPSase_L_chain PF00289.17 gi|389845559|ref|YP_006347798.1| - 0.054 13.6 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|389845559|ref|YP_006347798.1| - 0.089 12.3 0.1 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AA_permease_2 PF13520.1 gi|389845560|ref|YP_006347799.1| - 1.7e-59 201.5 47.6 2.5e-59 200.9 33.0 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|389845560|ref|YP_006347799.1| - 3.4e-44 150.9 47.6 4.6e-44 150.5 33.0 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|389845560|ref|YP_006347799.1| - 5.1e-26 91.5 12.1 4.1e-17 62.6 2.0 2.3 2 0 0 2 2 2 2 Universal stress protein family Prot_inhib_II PF02428.10 gi|389845561|ref|YP_006347800.1| - 0.034 14.1 0.2 0.051 13.6 0.1 1.3 1 0 0 1 1 1 0 Potato type II proteinase inhibitor family Usp PF00582.21 gi|389845562|ref|YP_006347801.1| - 9.8e-10 38.7 1.2 1.2e-09 38.4 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family HTH_24 PF13412.1 gi|389845563|ref|YP_006347802.1| - 5.3e-13 48.1 0.0 9.5e-13 47.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrkA_C PF02080.16 gi|389845563|ref|YP_006347802.1| - 9.3e-10 37.9 0.3 2e-09 36.9 0.2 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.1 gi|389845563|ref|YP_006347802.1| - 3.5e-09 36.0 0.1 6.3e-09 35.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|389845563|ref|YP_006347802.1| - 9.1e-08 31.6 0.0 2.8e-07 30.0 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|389845563|ref|YP_006347802.1| - 5.5e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|389845563|ref|YP_006347802.1| - 6.1e-06 25.8 0.0 1.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389845563|ref|YP_006347802.1| - 6.5e-06 25.7 0.0 1.2e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|389845563|ref|YP_006347802.1| - 3.1e-05 23.4 0.0 7.5e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|389845563|ref|YP_006347802.1| - 4.5e-05 23.0 0.0 0.00024 20.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|389845563|ref|YP_006347802.1| - 0.00011 22.4 0.1 0.0016 18.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|389845563|ref|YP_006347802.1| - 0.00016 21.5 0.0 0.00036 20.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|389845563|ref|YP_006347802.1| - 0.00096 19.2 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|389845563|ref|YP_006347802.1| - 0.00098 19.0 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389845563|ref|YP_006347802.1| - 0.0013 18.2 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|389845563|ref|YP_006347802.1| - 0.0014 18.3 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389845563|ref|YP_006347802.1| - 0.0022 17.5 0.0 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|389845563|ref|YP_006347802.1| - 0.0027 17.1 0.0 0.0079 15.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|389845563|ref|YP_006347802.1| - 0.0047 16.4 0.0 0.0094 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389845563|ref|YP_006347802.1| - 0.017 14.5 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 EAP30 PF04157.11 gi|389845563|ref|YP_006347802.1| - 0.02 14.0 0.0 0.5 9.4 0.0 2.3 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_Tnp_ISL3 PF13542.1 gi|389845563|ref|YP_006347802.1| - 0.024 13.8 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.22 gi|389845563|ref|YP_006347802.1| - 0.025 14.3 0.1 0.059 13.1 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.6 gi|389845563|ref|YP_006347802.1| - 0.027 13.8 0.0 0.098 12.0 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|389845563|ref|YP_006347802.1| - 0.04 13.8 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_30 PF13556.1 gi|389845563|ref|YP_006347802.1| - 0.04 13.5 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FaeA PF04703.7 gi|389845563|ref|YP_006347802.1| - 0.074 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HrcA_DNA-bdg PF03444.10 gi|389845563|ref|YP_006347802.1| - 0.08 12.3 0.0 0.29 10.6 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AsnC_trans_reg PF01037.16 gi|389845563|ref|YP_006347802.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 AsnC family PaaX PF07848.7 gi|389845563|ref|YP_006347802.1| - 0.1 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein FUR PF01475.14 gi|389845563|ref|YP_006347802.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.1 gi|389845563|ref|YP_006347802.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|389845563|ref|YP_006347802.1| - 0.15 12.1 0.0 0.41 10.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HypA PF01155.14 gi|389845566|ref|YP_006347805.1| - 0.00045 19.8 0.1 0.00054 19.6 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|389845566|ref|YP_006347805.1| - 0.0028 16.8 0.5 0.23 10.7 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Rubredoxin PF00301.15 gi|389845566|ref|YP_006347805.1| - 0.014 15.2 2.9 2.1 8.2 0.3 2.3 1 1 1 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|389845566|ref|YP_006347805.1| - 0.026 14.0 1.9 0.48 9.9 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|389845566|ref|YP_006347805.1| - 0.03 13.8 0.3 3.3 7.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|389845566|ref|YP_006347805.1| - 0.05 13.3 0.4 5 6.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|389845566|ref|YP_006347805.1| - 0.051 13.4 0.9 0.12 12.1 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|389845566|ref|YP_006347805.1| - 0.064 13.2 0.4 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PRC PF05239.11 gi|389845566|ref|YP_006347805.1| - 0.078 12.8 0.1 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 PRC-barrel domain Zn-ribbon_8 PF09723.5 gi|389845566|ref|YP_006347805.1| - 0.079 12.9 3.5 0.17 11.8 2.4 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|389845566|ref|YP_006347805.1| - 0.1 12.4 0.3 8.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|389845566|ref|YP_006347805.1| - 0.11 12.6 0.3 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain TF_Zn_Ribbon PF08271.7 gi|389845566|ref|YP_006347805.1| - 0.2 10.9 5.8 2.4 7.5 0.5 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|389845566|ref|YP_006347805.1| - 0.22 11.4 2.1 16 5.5 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|389845566|ref|YP_006347805.1| - 1.7 8.2 5.5 13 5.4 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|389845566|ref|YP_006347805.1| - 3.7 7.1 5.0 38 3.8 3.4 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain ApbA_C PF08546.6 gi|389845567|ref|YP_006347806.1| - 1.7e-35 121.7 0.9 1.7e-35 121.7 0.6 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|389845567|ref|YP_006347806.1| - 1.3e-28 99.3 0.3 1.9e-28 98.8 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|389845567|ref|YP_006347806.1| - 0.041 13.6 0.1 0.11 12.2 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|389845567|ref|YP_006347806.1| - 0.077 13.4 2.0 0.2 12.1 0.2 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sulfatase PF00884.18 gi|389845568|ref|YP_006347807.1| - 5e-47 160.5 0.7 7.7e-47 159.9 0.5 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|389845568|ref|YP_006347807.1| - 2.4e-12 46.8 1.4 2.7e-06 26.9 0.1 2.5 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|389845568|ref|YP_006347807.1| - 0.055 12.2 0.1 0.21 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|389845568|ref|YP_006347807.1| - 0.062 11.7 0.0 0.081 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) DUF310 PF03750.8 gi|389845568|ref|YP_006347807.1| - 0.12 12.6 0.0 0.37 10.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF310) NifU PF01106.12 gi|389845569|ref|YP_006347808.1| - 6.7e-11 41.8 0.0 9e-11 41.3 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain DoxX PF07681.7 gi|389845571|ref|YP_006347810.1| - 2.5e-13 50.2 12.0 2.5e-13 50.2 8.3 1.6 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.1 gi|389845571|ref|YP_006347810.1| - 0.00052 19.9 12.7 0.00067 19.5 8.8 1.2 1 0 0 1 1 1 1 DoxX-like family DoxD PF04173.8 gi|389845571|ref|YP_006347810.1| - 0.00087 18.9 1.2 0.0011 18.6 0.9 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD Flp_Fap PF04964.9 gi|389845571|ref|YP_006347810.1| - 0.14 11.8 2.4 0.39 10.3 0.1 2.3 2 0 0 2 2 2 0 Flp/Fap pilin component DUF2198 PF09964.4 gi|389845571|ref|YP_006347810.1| - 0.46 10.2 3.2 1.1 9.0 2.1 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) RHH_1 PF01402.16 gi|389845572|ref|YP_006347811.1| - 0.33 10.9 1.7 1.3 9.0 1.2 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Glyoxalase_2 PF12681.2 gi|389845573|ref|YP_006347812.1| - 5.2e-13 49.5 0.0 7.1e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389845573|ref|YP_006347812.1| - 1.6e-12 47.4 0.0 3.3e-12 46.4 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389845573|ref|YP_006347812.1| - 0.0036 17.2 0.0 0.0051 16.8 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|389845573|ref|YP_006347812.1| - 0.0094 15.8 0.0 0.013 15.3 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain DUF3315 PF11776.3 gi|389845573|ref|YP_006347812.1| - 0.11 12.0 0.2 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3315) DHHA1 PF02272.14 gi|662859280|ref|YP_006347813.2| - 1.7e-13 50.0 2.3 3.4e-13 49.0 1.6 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|662859280|ref|YP_006347813.2| - 1.3e-10 41.0 0.0 1.9e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 DHH family HDV_ag PF01517.13 gi|662859280|ref|YP_006347813.2| - 0.12 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen MFS_1 PF07690.11 gi|389845575|ref|YP_006347814.1| - 5.4e-28 97.7 57.6 1.9e-27 95.9 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HEM4 PF02602.10 gi|389845576|ref|YP_006347815.1| - 2e-43 148.2 0.2 2.4e-43 148.0 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Peripla_BP_3 PF13377.1 gi|389845576|ref|YP_006347815.1| - 0.039 13.9 0.5 0.15 12.0 0.1 2.0 1 1 0 2 2 2 0 Periplasmic binding protein-like domain TP_methylase PF00590.15 gi|389845577|ref|YP_006347816.1| - 1e-49 169.1 0.1 1.2e-49 168.8 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|389845577|ref|YP_006347816.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.8 2 1 0 2 2 2 0 Radical SAM superfamily Porphobil_deam PF01379.15 gi|662859281|ref|YP_006347817.2| - 4.5e-62 208.7 0.2 1.1e-49 168.2 0.1 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|662859281|ref|YP_006347817.2| - 8.6e-09 35.3 0.0 2.2e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF4229 PF14012.1 gi|389845579|ref|YP_006347818.1| - 0.35 10.7 9.6 1.5 8.7 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) Fst_toxin PF13955.1 gi|389845579|ref|YP_006347818.1| - 1.4 8.6 8.7 0.99 9.1 2.7 2.5 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system Aminotran_3 PF00202.16 gi|389845580|ref|YP_006347819.1| - 5.3e-64 216.2 0.0 6.9e-64 215.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|389845580|ref|YP_006347819.1| - 0.00022 20.2 0.0 0.00039 19.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Abi PF02517.11 gi|389845581|ref|YP_006347820.1| - 4.8e-07 29.8 5.4 1.2e-06 28.5 3.7 1.8 1 1 0 1 1 1 1 CAAX protease self-immunity P-II PF00543.17 gi|389845582|ref|YP_006347821.1| - 2.6e-33 114.5 0.1 3e-33 114.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Gifsy-2 PF13856.1 gi|389845582|ref|YP_006347821.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage Ammonium_transp PF00909.16 gi|389845583|ref|YP_006347822.1| - 9.6e-95 317.3 41.2 1.1e-94 317.1 28.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.6 gi|389845583|ref|YP_006347822.1| - 1.3 8.6 8.5 1.1 8.8 0.8 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.17 gi|389845584|ref|YP_006347823.1| - 1.9e-33 114.9 0.1 2.2e-33 114.7 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|389845585|ref|YP_006347824.1| - 1.6e-96 323.2 42.6 1.8e-96 323.0 29.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.6 gi|389845585|ref|YP_006347824.1| - 0.02 14.4 0.6 0.9 9.1 0.1 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) ALAD PF00490.16 gi|389845586|ref|YP_006347825.1| - 3.8e-139 463.0 0.1 4.3e-139 462.9 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase SNARE_assoc PF09335.6 gi|389845587|ref|YP_006347826.1| - 9.5e-10 38.7 4.6 1.4e-09 38.2 3.0 1.4 1 1 0 1 1 1 1 SNARE associated Golgi protein RseC_MucC PF04246.7 gi|389845587|ref|YP_006347826.1| - 0.97 8.9 5.3 1.9 8.0 3.7 1.5 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3209 PF11483.3 gi|389845588|ref|YP_006347827.1| - 0.041 14.2 0.6 0.049 13.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) HNH PF01844.18 gi|389845588|ref|YP_006347827.1| - 0.054 13.3 1.6 0.2 11.5 0.5 1.9 2 0 0 2 2 2 0 HNH endonuclease PyrI_C PF02748.10 gi|389845588|ref|YP_006347827.1| - 0.78 9.2 3.1 1 8.8 1.0 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain YyzF PF14116.1 gi|389845588|ref|YP_006347827.1| - 6.3 6.8 5.9 1.1 9.3 1.1 1.9 2 1 0 2 2 2 0 YyzF-like protein PHP PF02811.14 gi|389845589|ref|YP_006347828.1| - 1.6e-11 44.3 0.0 3.1e-11 43.3 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|389845589|ref|YP_006347828.1| - 0.0077 15.7 0.1 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 PHP-associated DUF3337 PF11816.3 gi|389845589|ref|YP_006347828.1| - 0.11 11.9 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) PqqD PF05402.7 gi|389845590|ref|YP_006347829.1| - 0.032 14.2 0.1 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) IRF-2BP1_2 PF11261.3 gi|662859282|ref|YP_006347831.2| - 0.023 14.1 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger NAD_binding_10 PF13460.1 gi|389845594|ref|YP_006347833.1| - 8.9e-29 100.7 0.4 1.1e-28 100.4 0.3 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|389845594|ref|YP_006347833.1| - 1.5e-15 57.0 0.0 2.3e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|389845594|ref|YP_006347833.1| - 9.6e-15 54.6 0.1 5.9e-13 48.8 0.1 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389845594|ref|YP_006347833.1| - 1.5e-09 36.9 0.0 2.7e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|389845594|ref|YP_006347833.1| - 7e-07 28.4 0.0 0.0017 17.3 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|389845594|ref|YP_006347833.1| - 3.6e-06 26.0 0.0 8.2e-06 24.9 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|389845594|ref|YP_006347833.1| - 0.00084 19.3 0.4 0.003 17.4 0.0 2.1 2 1 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|389845594|ref|YP_006347833.1| - 0.0025 17.7 0.5 0.039 13.9 0.0 2.6 3 0 0 3 3 3 1 TrkA-N domain DapB_N PF01113.15 gi|389845594|ref|YP_006347833.1| - 0.018 14.9 0.0 0.048 13.5 0.0 1.8 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus XdhC_C PF13478.1 gi|389845594|ref|YP_006347833.1| - 0.018 15.3 0.1 0.095 13.0 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain KR PF08659.5 gi|389845594|ref|YP_006347833.1| - 0.028 14.1 0.2 0.099 12.3 0.1 2.1 1 1 0 1 1 1 0 KR domain DUF4147 PF13660.1 gi|389845594|ref|YP_006347833.1| - 0.041 13.0 0.0 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) Polysacc_synt_2 PF02719.10 gi|389845594|ref|YP_006347833.1| - 0.12 11.2 0.0 0.87 8.4 0.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Glyco_trans_4_4 PF13579.1 gi|389845594|ref|YP_006347833.1| - 0.22 11.6 4.7 1.3 9.1 3.2 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain CxxCxxCC PF03692.10 gi|389845595|ref|YP_006347834.1| - 1.8e-05 25.1 0.3 0.014 15.8 0.0 2.2 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain zf-P11 PF03854.9 gi|662859283|ref|YP_006347835.2| - 0.017 14.6 0.4 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 P-11 zinc finger Prim_Zn_Ribbon PF08273.7 gi|662859283|ref|YP_006347835.2| - 0.064 13.3 0.7 4.7 7.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF4428 PF14471.1 gi|662859283|ref|YP_006347835.2| - 0.072 12.8 0.1 7.7 6.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Helicase_C_2 PF13307.1 gi|389845597|ref|YP_006347836.1| - 1.1e-21 77.4 0.0 1.8e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|389845597|ref|YP_006347836.1| - 2.4e-07 30.3 0.0 3.8e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|389845597|ref|YP_006347836.1| - 7.9e-06 25.8 0.0 0.0022 17.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|389845597|ref|YP_006347836.1| - 6.9e-05 22.4 0.0 0.079 12.4 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|389845597|ref|YP_006347836.1| - 0.00029 20.5 0.1 0.00079 19.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|389845597|ref|YP_006347836.1| - 0.00056 19.5 0.5 0.0086 15.6 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|389845597|ref|YP_006347836.1| - 0.0009 19.3 0.0 0.0048 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389845597|ref|YP_006347836.1| - 0.0018 17.7 0.4 0.047 13.1 0.0 3.1 4 0 0 4 4 4 1 AAA domain AAA_10 PF12846.2 gi|389845597|ref|YP_006347836.1| - 0.0035 16.8 0.1 1.2 8.5 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain DUF2075 PF09848.4 gi|389845597|ref|YP_006347836.1| - 0.018 14.0 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|389845597|ref|YP_006347836.1| - 0.018 15.0 0.0 0.095 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain DXP_redisom_C PF08436.7 gi|389845597|ref|YP_006347836.1| - 0.022 14.6 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal PhoH PF02562.11 gi|389845597|ref|YP_006347836.1| - 0.032 13.4 0.0 0.059 12.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.1 gi|389845597|ref|YP_006347836.1| - 0.039 13.8 0.0 0.096 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|389845597|ref|YP_006347836.1| - 0.041 14.0 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|389845597|ref|YP_006347836.1| - 0.051 12.7 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DNA_ligase_IV PF11411.3 gi|389845597|ref|YP_006347836.1| - 0.093 12.4 0.1 0.27 11.0 0.1 1.8 1 0 0 1 1 1 0 DNA ligase IV IstB_IS21 PF01695.12 gi|389845597|ref|YP_006347836.1| - 0.14 11.5 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein UPF0175 PF03683.8 gi|389845598|ref|YP_006347837.1| - 4.7e-07 29.1 0.0 5.8e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_psq PF05225.11 gi|389845598|ref|YP_006347837.1| - 0.022 14.3 0.1 0.053 13.0 0.0 1.6 2 0 0 2 2 2 0 helix-turn-helix, Psq domain NMD3 PF04981.8 gi|389845599|ref|YP_006347838.1| - 2.4e-68 229.7 0.0 2.9e-68 229.5 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|389845599|ref|YP_006347838.1| - 0.0016 18.2 6.1 0.048 13.4 2.5 3.0 2 1 1 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389845599|ref|YP_006347838.1| - 0.0021 17.4 1.8 1.9 8.0 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain GFA PF04828.9 gi|389845599|ref|YP_006347838.1| - 0.0045 16.9 2.8 3.5 7.6 0.0 3.4 2 1 0 3 3 3 2 Glutathione-dependent formaldehyde-activating enzyme FYVE PF01363.16 gi|389845599|ref|YP_006347838.1| - 0.011 15.6 5.5 0.014 15.3 0.2 2.4 2 1 0 2 2 2 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|389845599|ref|YP_006347838.1| - 0.012 15.2 14.1 3 7.5 0.2 3.7 3 0 0 3 3 3 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|389845599|ref|YP_006347838.1| - 0.049 12.8 7.6 1.3 8.2 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|389845599|ref|YP_006347838.1| - 0.083 12.6 0.4 0.083 12.6 0.3 3.4 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-TFIIB PF13453.1 gi|389845599|ref|YP_006347838.1| - 3.7 6.8 11.1 2.2 7.5 1.7 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|389845599|ref|YP_006347838.1| - 7.1 6.2 14.6 1.2 8.7 0.2 3.4 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Pribosyltran PF00156.22 gi|389845600|ref|YP_006347839.1| - 1e-28 99.5 0.1 1.3e-28 99.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|389845600|ref|YP_006347839.1| - 0.0013 17.9 0.0 0.0024 17.1 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|389845600|ref|YP_006347839.1| - 0.0043 16.3 0.0 0.1 11.8 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase YL1 PF05764.8 gi|389845600|ref|YP_006347839.1| - 0.15 11.6 0.1 0.25 10.9 0.1 1.2 1 0 0 1 1 1 0 YL1 nuclear protein Epimerase PF01370.16 gi|389845601|ref|YP_006347840.1| - 1.5e-27 96.5 0.0 6.3e-25 87.9 0.0 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|389845601|ref|YP_006347840.1| - 1.1e-12 47.5 0.2 7.8e-12 44.6 0.1 2.1 2 1 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|389845601|ref|YP_006347840.1| - 2.2e-10 40.8 0.3 2.8e-10 40.5 0.2 1.1 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|389845601|ref|YP_006347840.1| - 4.1e-08 32.2 0.0 6.2e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|389845601|ref|YP_006347840.1| - 1.5e-07 30.5 0.0 3.5e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|389845601|ref|YP_006347840.1| - 0.0002 21.3 1.9 0.00021 21.2 0.2 1.9 2 0 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|389845601|ref|YP_006347840.1| - 0.0039 16.1 0.0 0.052 12.4 0.0 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein DapB_N PF01113.15 gi|389845601|ref|YP_006347840.1| - 0.16 11.8 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Peptidase_M48 PF01435.13 gi|662859284|ref|YP_006347841.2| - 3e-40 138.1 0.0 4.1e-40 137.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|662859284|ref|YP_006347841.2| - 1.5e-07 30.6 0.4 5.6e-06 25.5 0.0 2.2 2 1 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|662859284|ref|YP_006347841.2| - 0.072 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily Tic20 PF09685.5 gi|662859284|ref|YP_006347841.2| - 2.9 7.9 13.3 1.3 9.0 0.4 2.2 2 0 0 2 2 2 0 Tic20-like protein ABC2_membrane_4 PF12730.2 gi|662859284|ref|YP_006347841.2| - 3.2 6.8 16.6 3.7 6.6 3.8 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein APH PF01636.18 gi|389845603|ref|YP_006347842.1| - 1.1e-31 110.3 2.3 1.9e-31 109.6 1.6 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|389845603|ref|YP_006347842.1| - 0.0028 16.8 0.0 0.0041 16.3 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|389845603|ref|YP_006347842.1| - 0.0031 16.2 0.0 0.0053 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) DUF318 PF03773.8 gi|389845605|ref|YP_006347844.1| - 0.035 13.0 0.5 0.039 12.9 0.3 1.1 1 0 0 1 1 1 0 Predicted permease Nicastrin PF05450.10 gi|389845605|ref|YP_006347844.1| - 0.084 12.1 0.4 0.09 12.0 0.3 1.1 1 0 0 1 1 1 0 Nicastrin FUSC PF04632.7 gi|389845605|ref|YP_006347844.1| - 0.1 10.9 2.9 0.11 10.8 2.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family PrgI PF12666.2 gi|389845605|ref|YP_006347844.1| - 0.18 11.9 2.0 0.2 11.8 1.4 1.1 1 0 0 1 1 1 0 PrgI family protein DUF4131 PF13567.1 gi|389845605|ref|YP_006347844.1| - 0.65 9.3 3.3 0.7 9.2 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Rad51 PF08423.6 gi|389845606|ref|YP_006347845.1| - 3e-76 255.7 0.0 1.2e-45 155.4 0.0 2.1 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|389845606|ref|YP_006347845.1| - 9.3e-12 44.9 0.1 2.8e-11 43.4 0.0 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|389845606|ref|YP_006347845.1| - 3.2e-07 29.9 0.0 5.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|389845606|ref|YP_006347845.1| - 5e-06 25.8 0.0 0.0032 16.5 0.0 2.3 2 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|389845606|ref|YP_006347845.1| - 3.5e-05 23.2 0.1 0.00027 20.4 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|389845606|ref|YP_006347845.1| - 0.00048 19.9 0.0 0.0014 18.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|389845606|ref|YP_006347845.1| - 0.0015 18.0 0.0 0.048 13.2 0.0 2.8 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|389845606|ref|YP_006347845.1| - 0.0016 18.3 0.0 0.0057 16.5 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus KaiC PF06745.8 gi|389845606|ref|YP_006347845.1| - 0.0018 17.4 0.1 0.0041 16.2 0.0 1.6 2 0 0 2 2 2 1 KaiC IMS_HHH PF11798.3 gi|389845606|ref|YP_006347845.1| - 0.051 13.6 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif DUF4332 PF14229.1 gi|389845606|ref|YP_006347845.1| - 0.12 12.3 0.0 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) Pyr_redox_2 PF07992.9 gi|389845607|ref|YP_006347846.1| - 2.6e-13 50.3 0.1 3.8e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|389845607|ref|YP_006347846.1| - 0.0025 17.6 1.5 2.6 7.7 0.1 3.0 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|389845607|ref|YP_006347846.1| - 0.047 14.1 0.5 14 6.1 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1641 PF07849.6 gi|389845608|ref|YP_006347847.1| - 7.8e-12 44.6 0.5 4.8e-11 42.0 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1641) TGT PF01702.13 gi|389845608|ref|YP_006347847.1| - 0.03 13.6 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase NifU_N PF01592.11 gi|389845609|ref|YP_006347848.1| - 9e-27 93.5 0.0 1e-26 93.3 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain FluMu_gp41 PF10109.4 gi|389845609|ref|YP_006347848.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Mu-like prophage FluMu protein gp41 HCBP_related PF06594.6 gi|389845609|ref|YP_006347848.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain SufE PF02657.10 gi|389845609|ref|YP_006347848.1| - 0.024 14.2 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain Aminotran_5 PF00266.14 gi|389845610|ref|YP_006347849.1| - 3.3e-147 490.0 0.0 4.4e-147 489.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|389845610|ref|YP_006347849.1| - 1.2e-10 41.0 0.8 2e-10 40.3 0.6 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|389845610|ref|YP_006347849.1| - 8.7e-08 31.6 0.1 1.1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|389845610|ref|YP_006347849.1| - 6.1e-06 24.7 0.0 1.1e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|389845610|ref|YP_006347849.1| - 0.00069 18.4 0.0 0.0017 17.1 0.0 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.14 gi|389845610|ref|YP_006347849.1| - 0.0013 17.2 0.0 0.0022 16.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain DUF424 PF04242.8 gi|389845611|ref|YP_006347850.1| - 3.2e-28 97.5 0.1 3.6e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Plectin PF00681.15 gi|389845611|ref|YP_006347850.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Plectin repeat TPR_11 PF13414.1 gi|662859285|ref|YP_006347851.2| - 3.8e-35 119.3 20.5 3.3e-13 49.0 0.6 3.2 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|662859285|ref|YP_006347851.2| - 4e-24 83.1 3.5 3.6e-06 26.3 0.0 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|662859285|ref|YP_006347851.2| - 1.1e-22 78.0 11.8 9.3e-06 25.1 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|662859285|ref|YP_006347851.2| - 7.9e-18 64.6 19.1 2.1e-10 41.0 1.8 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|662859285|ref|YP_006347851.2| - 4.7e-16 58.5 13.2 4.1e-09 36.2 1.8 3.5 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|662859285|ref|YP_006347851.2| - 9.5e-16 56.3 0.1 0.053 13.3 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|662859285|ref|YP_006347851.2| - 3.8e-11 42.5 21.0 7.1e-06 26.2 0.7 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|662859285|ref|YP_006347851.2| - 4.3e-11 42.0 2.7 0.00013 21.9 0.0 4.9 6 0 0 6 6 4 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|662859285|ref|YP_006347851.2| - 3.1e-10 39.7 12.7 0.0021 17.8 2.9 3.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|662859285|ref|YP_006347851.2| - 6.6e-09 34.9 10.3 0.00019 20.9 0.1 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|662859285|ref|YP_006347851.2| - 1.1e-06 28.9 8.1 0.0036 17.6 0.0 3.7 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|662859285|ref|YP_006347851.2| - 8.6e-06 25.8 6.1 5.7 7.6 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|662859285|ref|YP_006347851.2| - 3.3e-05 23.9 0.0 0.15 12.2 0.0 2.4 2 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|662859285|ref|YP_006347851.2| - 0.00017 21.3 24.6 0.0012 18.7 0.4 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|662859285|ref|YP_006347851.2| - 0.00082 19.5 0.8 0.00082 19.5 0.5 5.2 6 0 0 6 6 5 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|662859285|ref|YP_006347851.2| - 0.014 15.2 11.1 3.7 7.3 0.2 4.0 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) FAT PF02259.18 gi|662859285|ref|YP_006347851.2| - 0.037 13.0 0.8 0.49 9.3 0.3 2.2 1 1 0 1 1 1 0 FAT domain Apc5 PF12862.2 gi|662859285|ref|YP_006347851.2| - 0.44 10.4 6.9 9.5 6.1 0.4 3.6 2 1 2 4 4 4 0 Anaphase-promoting complex subunit 5 DUF3366 PF11846.3 gi|662859285|ref|YP_006347851.2| - 1.7 8.4 6.8 11 5.8 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3366) His_Phos_1 PF00300.17 gi|662859286|ref|YP_006347852.2| - 3e-18 66.4 0.1 3.7e-18 66.1 0.1 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Aminotran_MocR PF12897.2 gi|662859286|ref|YP_006347852.2| - 0.01 14.4 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase LigT_PEase PF02834.11 gi|389845614|ref|YP_006347853.1| - 5.4e-25 87.1 0.0 4.9e-12 45.6 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|389845614|ref|YP_006347853.1| - 1.3e-19 70.3 0.2 1.6e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|389845614|ref|YP_006347853.1| - 1.9e-08 34.2 0.0 2.4e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|389845614|ref|YP_006347853.1| - 0.0024 17.3 0.0 0.01 15.3 0.0 1.8 2 0 0 2 2 2 1 Cyclic phosphodiesterase-like protein EamA PF00892.15 gi|389845615|ref|YP_006347854.1| - 3.6e-34 117.5 25.5 4.6e-18 65.4 8.9 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389845615|ref|YP_006347854.1| - 2.9e-05 24.2 15.1 0.00017 21.7 1.3 3.4 1 1 2 4 4 4 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|389845615|ref|YP_006347854.1| - 0.028 14.2 0.3 0.088 12.6 0.2 1.9 1 0 0 1 1 1 0 Uncharacterised protein family UPF0546 DUF308 PF03729.8 gi|389845615|ref|YP_006347854.1| - 0.029 14.3 2.3 0.029 14.3 1.6 5.0 4 2 1 5 5 5 0 Short repeat of unknown function (DUF308) TPT PF03151.11 gi|389845615|ref|YP_006347854.1| - 0.079 12.6 14.7 0.14 11.8 6.4 2.5 2 1 0 2 2 2 0 Triose-phosphate Transporter family PhaG_MnhG_YufB PF03334.9 gi|389845615|ref|YP_006347854.1| - 1.7 8.7 0.0 1.7 8.7 0.0 4.2 3 1 0 3 3 3 0 Na+/H+ antiporter subunit Ribosomal_L39 PF00832.15 gi|389845616|ref|YP_006347855.1| - 1.3e-20 72.5 7.9 1.6e-20 72.2 5.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4650 PF15509.1 gi|389845616|ref|YP_006347855.1| - 0.14 11.0 0.5 0.12 11.2 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4650) Ribosomal_L31e PF01198.14 gi|389845617|ref|YP_006347856.1| - 4.1e-26 90.4 0.3 4.7e-26 90.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Linker_histone PF00538.14 gi|389845617|ref|YP_006347856.1| - 0.018 15.1 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 linker histone H1 and H5 family Ribosomal_S24e PF01282.14 gi|389845617|ref|YP_006347856.1| - 0.058 13.2 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S24e eIF-6 PF01912.13 gi|389845618|ref|YP_006347857.1| - 1.7e-70 236.1 0.0 2e-70 235.9 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|662859287|ref|YP_006347858.2| - 6.7e-09 35.6 0.0 7e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|389845620|ref|YP_006347859.1| - 1.9e-21 75.9 13.5 1.9e-21 75.9 9.4 2.2 1 1 0 1 1 1 1 Prefoldin subunit Spc7 PF08317.6 gi|389845620|ref|YP_006347859.1| - 3.9e-05 22.4 14.9 0.013 14.2 1.3 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein APG6 PF04111.7 gi|389845620|ref|YP_006347859.1| - 0.00014 20.9 19.2 0.015 14.3 6.3 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 HCMV_UL139 PF12507.3 gi|389845620|ref|YP_006347859.1| - 0.00019 21.6 5.8 0.11 12.6 2.2 2.1 2 0 0 2 2 2 2 Human Cytomegalovirus UL139 protein IncA PF04156.9 gi|389845620|ref|YP_006347859.1| - 0.00029 20.4 26.4 0.0015 18.1 3.9 2.2 2 0 0 2 2 2 1 IncA protein CENP-F_leu_zip PF10473.4 gi|389845620|ref|YP_006347859.1| - 0.00079 19.2 17.1 0.031 14.1 1.1 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2353 PF09789.4 gi|389845620|ref|YP_006347859.1| - 0.001 18.3 9.3 0.0018 17.5 6.4 1.4 1 1 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) DivIC PF04977.10 gi|389845620|ref|YP_006347859.1| - 0.0012 18.3 4.9 0.0012 18.3 3.4 3.2 2 1 1 3 3 2 2 Septum formation initiator Mnd1 PF03962.10 gi|389845620|ref|YP_006347859.1| - 0.0013 18.4 14.4 0.1 12.2 0.6 2.1 2 0 0 2 2 2 2 Mnd1 family TBPIP PF07106.8 gi|389845620|ref|YP_006347859.1| - 0.0017 17.9 19.4 0.038 13.5 3.2 2.1 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GAS PF13851.1 gi|389845620|ref|YP_006347859.1| - 0.0022 17.2 12.0 0.063 12.4 0.2 2.1 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|389845620|ref|YP_006347859.1| - 0.0023 17.7 25.1 0.071 12.9 3.3 2.6 2 1 0 2 2 2 2 Tropomyosin like FlxA PF14282.1 gi|389845620|ref|YP_006347859.1| - 0.0028 17.5 32.3 0.011 15.7 13.9 2.5 2 0 0 2 2 2 1 FlxA-like protein Ax_dynein_light PF10211.4 gi|389845620|ref|YP_006347859.1| - 0.0029 17.4 15.6 0.073 12.9 4.7 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain Spectrin PF00435.16 gi|389845620|ref|YP_006347859.1| - 0.003 17.8 19.1 0.23 11.7 6.9 2.3 2 0 0 2 2 2 2 Spectrin repeat Fib_alpha PF08702.5 gi|389845620|ref|YP_006347859.1| - 0.0038 17.3 14.2 0.2 11.7 0.5 2.5 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|389845620|ref|YP_006347859.1| - 0.0049 17.0 15.7 0.032 14.4 2.0 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|389845620|ref|YP_006347859.1| - 0.005 16.0 6.0 0.042 13.0 0.7 2.0 1 1 1 2 2 2 1 Reovirus sigma C capsid protein DUF4337 PF14235.1 gi|389845620|ref|YP_006347859.1| - 0.005 16.6 15.1 0.051 13.4 6.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) Dor1 PF04124.7 gi|389845620|ref|YP_006347859.1| - 0.0057 15.1 10.1 0.0091 14.4 2.3 2.0 2 0 0 2 2 2 1 Dor1-like family COG2 PF06148.6 gi|389845620|ref|YP_006347859.1| - 0.0059 16.4 9.7 0.13 12.1 0.3 2.1 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Filament PF00038.16 gi|389845620|ref|YP_006347859.1| - 0.0079 15.6 20.8 0.19 11.1 8.3 2.0 2 0 0 2 2 2 2 Intermediate filament protein Prefoldin_2 PF01920.15 gi|389845620|ref|YP_006347859.1| - 0.0086 15.8 8.2 0.0086 15.8 5.7 3.6 1 1 2 3 3 2 2 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|389845620|ref|YP_006347859.1| - 0.009 15.7 4.3 0.009 15.7 3.0 2.9 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding FliD_C PF07195.7 gi|389845620|ref|YP_006347859.1| - 0.01 15.1 10.2 0.032 13.5 3.6 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF342 PF03961.8 gi|389845620|ref|YP_006347859.1| - 0.014 13.8 13.4 0.17 10.2 3.7 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) DUF812 PF05667.6 gi|389845620|ref|YP_006347859.1| - 0.018 13.5 17.8 0.059 11.8 1.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) AAA_27 PF13514.1 gi|389845620|ref|YP_006347859.1| - 0.019 12.7 16.4 0.024 12.3 11.4 1.1 1 0 0 1 1 1 0 AAA domain FliJ PF02050.11 gi|389845620|ref|YP_006347859.1| - 0.023 14.7 0.5 0.023 14.7 0.3 3.1 2 1 1 3 3 3 0 Flagellar FliJ protein HrpB7 PF09486.5 gi|389845620|ref|YP_006347859.1| - 0.025 14.4 14.7 0.18 11.6 2.3 2.2 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Hemerythrin PF01814.18 gi|389845620|ref|YP_006347859.1| - 0.03 14.4 4.5 3.3 7.8 0.1 2.5 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Allexi_40kDa PF05549.6 gi|389845620|ref|YP_006347859.1| - 0.031 13.5 6.7 0.21 10.8 1.8 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Tropomyosin PF00261.15 gi|389845620|ref|YP_006347859.1| - 0.037 13.0 16.2 0.2 10.7 5.1 2.1 2 0 0 2 2 2 0 Tropomyosin TMF_TATA_bd PF12325.3 gi|389845620|ref|YP_006347859.1| - 0.039 13.6 24.6 0.1 12.3 3.2 2.2 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding BLOC1_2 PF10046.4 gi|389845620|ref|YP_006347859.1| - 0.044 13.9 2.4 0.044 13.9 1.7 3.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF603 PF04645.7 gi|389845620|ref|YP_006347859.1| - 0.048 13.6 3.2 3.5 7.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF603 DivIVA PF05103.8 gi|389845620|ref|YP_006347859.1| - 0.052 13.5 20.9 0.58 10.2 7.2 2.0 2 0 0 2 2 2 0 DivIVA protein Syntaxin-6_N PF09177.6 gi|389845620|ref|YP_006347859.1| - 0.071 13.5 14.1 0.24 11.8 3.3 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF4201 PF13870.1 gi|389845620|ref|YP_006347859.1| - 0.074 12.4 12.8 1.2 8.5 4.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) TPR_MLP1_2 PF07926.7 gi|389845620|ref|YP_006347859.1| - 0.083 12.6 20.1 0.78 9.4 1.7 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF607 PF04678.8 gi|389845620|ref|YP_006347859.1| - 0.099 12.5 10.3 1.5 8.7 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 AAA_13 PF13166.1 gi|389845620|ref|YP_006347859.1| - 0.099 11.0 16.0 0.38 9.1 1.9 1.9 1 1 0 1 1 1 0 AAA domain Phage_GP20 PF06810.6 gi|389845620|ref|YP_006347859.1| - 0.1 12.0 22.7 0.67 9.3 1.7 2.6 2 1 0 2 2 2 0 Phage minor structural protein GP20 CK2S PF15011.1 gi|389845620|ref|YP_006347859.1| - 0.11 12.2 9.0 1.7 8.4 2.2 2.2 2 0 0 2 2 2 0 Casein Kinase 2 substrate ATP-synt_D PF01813.12 gi|389845620|ref|YP_006347859.1| - 0.12 11.9 7.9 0.22 11.0 2.6 2.1 2 0 0 2 2 2 0 ATP synthase subunit D Med4 PF10018.4 gi|389845620|ref|YP_006347859.1| - 0.12 11.7 15.4 0.59 9.5 0.6 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 CCDC155 PF14662.1 gi|389845620|ref|YP_006347859.1| - 0.12 11.9 28.6 0.34 10.4 12.4 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 DUF3450 PF11932.3 gi|389845620|ref|YP_006347859.1| - 0.13 11.5 23.4 0.92 8.7 9.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) CorA PF01544.13 gi|389845620|ref|YP_006347859.1| - 0.13 11.2 12.5 1 8.3 0.7 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Nsp1_C PF05064.8 gi|389845620|ref|YP_006347859.1| - 0.15 11.7 19.0 1.3 8.7 6.9 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region Laminin_II PF06009.7 gi|389845620|ref|YP_006347859.1| - 0.16 11.7 12.1 0.12 12.1 0.8 2.2 1 1 0 2 2 2 0 Laminin Domain II Prefoldin_3 PF13758.1 gi|389845620|ref|YP_006347859.1| - 0.18 11.6 9.8 0.58 9.9 4.3 2.6 1 1 0 1 1 1 0 Prefoldin subunit DUF3166 PF11365.3 gi|389845620|ref|YP_006347859.1| - 0.21 12.0 9.6 2.3 8.7 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3166) GlutR_dimer PF00745.15 gi|389845620|ref|YP_006347859.1| - 0.21 11.5 10.3 0.045 13.6 3.5 2.2 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain GrpE PF01025.14 gi|389845620|ref|YP_006347859.1| - 0.22 11.0 13.1 0.56 9.7 3.5 2.3 2 0 0 2 2 2 0 GrpE ERM PF00769.14 gi|389845620|ref|YP_006347859.1| - 0.24 10.8 20.1 1.4 8.4 1.1 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|389845620|ref|YP_006347859.1| - 0.24 9.7 11.5 0.47 8.8 3.1 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain EzrA PF06160.7 gi|389845620|ref|YP_006347859.1| - 0.25 9.4 17.8 0.051 11.7 1.2 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Mod_r PF07200.8 gi|389845620|ref|YP_006347859.1| - 0.26 11.1 14.6 1.8 8.4 3.7 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.6 gi|389845620|ref|YP_006347859.1| - 0.36 10.7 17.4 3.7 7.5 1.1 4.2 3 2 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF724 PF05266.9 gi|389845620|ref|YP_006347859.1| - 0.38 10.3 12.8 2 7.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF972 PF06156.8 gi|389845620|ref|YP_006347859.1| - 0.39 11.0 18.9 0.86 9.9 2.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Syntaxin PF00804.20 gi|389845620|ref|YP_006347859.1| - 0.4 10.8 20.0 2.4 8.3 5.3 2.7 1 1 1 2 2 2 0 Syntaxin bZIP_1 PF00170.16 gi|389845620|ref|YP_006347859.1| - 0.4 10.6 11.6 2.4 8.1 0.3 2.7 2 1 0 2 2 2 0 bZIP transcription factor IFT57 PF10498.4 gi|389845620|ref|YP_006347859.1| - 0.4 9.3 16.0 0.23 10.1 0.7 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Cluap1 PF10234.4 gi|389845620|ref|YP_006347859.1| - 0.44 9.6 13.2 1 8.5 4.7 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF1664 PF07889.7 gi|389845620|ref|YP_006347859.1| - 0.55 10.0 13.0 1 9.1 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Golgin_A5 PF09787.4 gi|389845620|ref|YP_006347859.1| - 0.57 8.6 26.1 0.21 10.0 2.2 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 DUF4140 PF13600.1 gi|389845620|ref|YP_006347859.1| - 0.61 10.5 20.1 1.4 9.4 2.3 2.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF1515 PF07439.6 gi|389845620|ref|YP_006347859.1| - 0.61 9.9 11.5 0.11 12.3 0.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Tnp_P_element PF12017.3 gi|389845620|ref|YP_006347859.1| - 0.62 9.2 9.3 4.5 6.4 0.1 2.2 1 1 1 2 2 2 0 Transposase protein DUF4618 PF15397.1 gi|389845620|ref|YP_006347859.1| - 0.64 9.2 17.3 0.62 9.3 1.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) TP_methylase PF00590.15 gi|389845620|ref|YP_006347859.1| - 0.68 9.6 2.9 0.43 10.2 0.1 1.9 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Uds1 PF15456.1 gi|389845620|ref|YP_006347859.1| - 0.8 9.6 10.0 6 6.8 0.3 2.4 2 0 0 2 2 2 0 Up-regulated During Septation Nup54 PF13874.1 gi|389845620|ref|YP_006347859.1| - 0.82 9.3 15.0 1.1 8.8 5.0 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF2443 PF10398.4 gi|389845620|ref|YP_006347859.1| - 1 9.1 4.1 2.3 8.0 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2443) DUF2730 PF10805.3 gi|389845620|ref|YP_006347859.1| - 1 9.1 6.6 5 6.9 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) LON PF02190.11 gi|389845620|ref|YP_006347859.1| - 1.1 8.9 4.2 1.2 8.7 2.3 1.6 1 1 0 1 1 1 0 ATP-dependent protease La (LON) domain DUF948 PF06103.6 gi|389845620|ref|YP_006347859.1| - 1.1 9.2 11.8 1.7 8.5 0.6 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Med8 PF10232.4 gi|389845620|ref|YP_006347859.1| - 1.1 8.7 12.9 1.5 8.2 4.8 2.0 2 0 0 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 Spc24 PF08286.6 gi|389845620|ref|YP_006347859.1| - 1.3 8.7 23.6 0.78 9.4 3.6 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Seryl_tRNA_N PF02403.17 gi|389845620|ref|YP_006347859.1| - 1.4 8.9 18.8 1.1 9.3 1.1 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TSC22 PF01166.13 gi|389845620|ref|YP_006347859.1| - 1.5 8.8 19.4 0.061 13.2 3.2 3.0 3 1 1 4 4 2 0 TSC-22/dip/bun family DUF4446 PF14584.1 gi|389845620|ref|YP_006347859.1| - 1.5 8.6 10.8 3.9 7.2 3.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Cob_adeno_trans PF01923.13 gi|389845620|ref|YP_006347859.1| - 1.7 8.3 11.7 1.8 8.3 3.7 2.5 1 1 1 2 2 2 0 Cobalamin adenosyltransferase CASP_C PF08172.7 gi|389845620|ref|YP_006347859.1| - 2.2 7.2 11.7 0.86 8.5 0.4 2.1 2 0 0 2 2 2 0 CASP C terminal Baculo_PEP_C PF04513.7 gi|389845620|ref|YP_006347859.1| - 2.3 8.0 14.3 0.34 10.7 0.8 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ORF6C PF10552.4 gi|389845620|ref|YP_006347859.1| - 2.5 7.8 15.0 0.93 9.2 1.3 2.5 2 1 0 2 2 2 0 ORF6C domain DUF2400 PF09674.5 gi|389845620|ref|YP_006347859.1| - 2.6 7.6 6.1 8.5 6.0 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) SPX PF03105.14 gi|389845620|ref|YP_006347859.1| - 2.6 7.7 7.9 23 4.6 5.5 2.0 1 1 0 1 1 1 0 SPX domain Troponin PF00992.15 gi|389845620|ref|YP_006347859.1| - 2.6 8.0 12.4 4.7 7.2 4.1 2.3 2 0 0 2 2 2 0 Troponin Cep57_CLD_2 PF14197.1 gi|389845620|ref|YP_006347859.1| - 2.7 8.0 16.4 6 6.8 2.4 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 FH2 PF02181.18 gi|389845620|ref|YP_006347859.1| - 2.8 6.7 9.1 2.5 6.9 0.5 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain ADIP PF11559.3 gi|389845620|ref|YP_006347859.1| - 3.2 7.6 18.9 5.9 6.7 6.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Vps51 PF08700.6 gi|389845620|ref|YP_006347859.1| - 3.3 7.6 12.9 1.3 8.9 0.3 3.4 2 2 1 3 3 3 0 Vps51/Vps67 Rho_Binding PF08912.6 gi|389845620|ref|YP_006347859.1| - 4 7.8 15.8 0.68 10.2 3.2 2.9 2 1 0 2 2 2 0 Rho Binding DUF1980 PF09323.5 gi|389845620|ref|YP_006347859.1| - 4.2 7.0 6.5 0.27 10.9 1.1 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF1980) DUF1024 PF06260.7 gi|389845620|ref|YP_006347859.1| - 4.2 7.5 12.1 0.19 11.8 0.5 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF1024) DUF3373 PF11853.3 gi|389845620|ref|YP_006347859.1| - 4.4 5.7 20.6 0.24 9.8 1.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) CDC37_N PF03234.9 gi|389845620|ref|YP_006347859.1| - 4.6 7.5 14.2 8.9 6.5 9.9 1.4 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4407 PF14362.1 gi|389845620|ref|YP_006347859.1| - 4.7 6.0 19.5 2.3e+02 0.5 13.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4164 PF13747.1 gi|389845620|ref|YP_006347859.1| - 4.7 7.4 16.8 0.97 9.6 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3552 PF12072.3 gi|389845620|ref|YP_006347859.1| - 5 6.2 21.8 2.3 7.3 7.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) YlqD PF11068.3 gi|389845620|ref|YP_006347859.1| - 5.2 7.1 29.5 1.9 8.5 3.5 2.7 2 2 0 2 2 2 0 YlqD protein L31 PF09784.4 gi|389845620|ref|YP_006347859.1| - 5.3 7.1 7.1 12 6.0 0.0 2.8 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L31 Cortex-I_coil PF09304.5 gi|389845620|ref|YP_006347859.1| - 5.3 7.1 16.7 3.6 7.6 4.8 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil DUF3584 PF12128.3 gi|389845620|ref|YP_006347859.1| - 5.7 4.1 22.6 0.68 7.1 2.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Fzo_mitofusin PF04799.8 gi|389845620|ref|YP_006347859.1| - 5.7 6.2 11.4 4 6.7 1.1 2.4 2 0 0 2 2 2 0 fzo-like conserved region Vfa1 PF08432.5 gi|389845620|ref|YP_006347859.1| - 6.3 6.7 11.0 2.8 7.9 3.0 2.1 2 0 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 SYCE1 PF15233.1 gi|389845620|ref|YP_006347859.1| - 6.9 6.6 19.8 8.6 6.2 5.9 2.1 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 DUF904 PF06005.7 gi|389845620|ref|YP_006347859.1| - 7.1 7.0 23.9 12 6.3 4.4 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF904) Herpes_UL6 PF01763.11 gi|389845620|ref|YP_006347859.1| - 7.1 4.6 12.4 1.7 6.7 4.7 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like Tho2 PF11262.3 gi|389845620|ref|YP_006347859.1| - 7.2 5.5 8.4 4.2 6.3 1.7 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 zf-CpG_bind_C PF12269.3 gi|389845620|ref|YP_006347859.1| - 9.4 5.6 9.9 7.1 6.0 4.0 2.0 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain SRP54 PF00448.17 gi|389845621|ref|YP_006347860.1| - 2.7e-67 226.0 0.3 4.8e-67 225.2 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|389845621|ref|YP_006347860.1| - 1.7e-15 56.8 0.7 1.7e-15 56.8 0.5 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.15 gi|389845621|ref|YP_006347860.1| - 3.6e-05 23.4 0.0 6.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|389845621|ref|YP_006347860.1| - 3.6e-05 23.2 1.5 3.6e-05 23.2 1.1 2.4 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|389845621|ref|YP_006347860.1| - 6.2e-05 22.4 0.1 0.00093 18.6 0.0 2.5 2 0 0 2 2 2 1 Thymidylate kinase cobW PF02492.14 gi|389845621|ref|YP_006347860.1| - 7.8e-05 22.1 0.1 0.00024 20.6 0.1 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|389845621|ref|YP_006347860.1| - 0.00014 21.0 0.1 0.00027 20.1 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|389845621|ref|YP_006347860.1| - 0.00027 20.6 0.2 0.00086 19.0 0.1 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|389845621|ref|YP_006347860.1| - 0.0011 19.0 0.1 0.0031 17.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain KTI12 PF08433.5 gi|389845621|ref|YP_006347860.1| - 0.0017 17.5 0.1 0.0061 15.8 0.0 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|389845621|ref|YP_006347860.1| - 0.0055 17.5 0.0 0.0055 17.5 0.0 2.7 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|389845621|ref|YP_006347860.1| - 0.011 15.7 0.0 0.011 15.7 0.0 2.7 3 0 0 3 3 3 0 AAA ATPase domain AAA_28 PF13521.1 gi|389845621|ref|YP_006347860.1| - 0.015 15.2 0.2 0.015 15.2 0.2 2.9 3 1 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|389845621|ref|YP_006347860.1| - 0.022 14.6 0.0 0.07 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|389845621|ref|YP_006347860.1| - 0.023 14.4 0.1 0.067 12.9 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|389845621|ref|YP_006347860.1| - 0.023 14.4 0.2 0.053 13.2 0.2 1.6 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.1 gi|389845621|ref|YP_006347860.1| - 0.031 14.1 0.1 0.068 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|389845621|ref|YP_006347860.1| - 0.037 13.0 0.9 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_18 PF13238.1 gi|389845621|ref|YP_006347860.1| - 0.061 13.6 0.2 0.19 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|389845621|ref|YP_006347860.1| - 0.068 13.3 0.2 0.23 11.6 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|389845621|ref|YP_006347860.1| - 0.11 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain LysE PF01810.13 gi|389845622|ref|YP_006347861.1| - 3.4e-33 114.5 8.0 4e-33 114.2 5.5 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|389845622|ref|YP_006347861.1| - 0.11 11.9 4.7 0.41 10.0 3.2 2.1 1 1 0 1 1 1 0 Integral membrane protein TerC family SRP54 PF00448.17 gi|389845623|ref|YP_006347862.1| - 5.9e-63 211.8 0.1 1.2e-62 210.8 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|389845623|ref|YP_006347862.1| - 1.8e-28 98.8 5.9 1.8e-28 98.8 4.1 3.2 3 1 1 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|389845623|ref|YP_006347862.1| - 8.6e-17 61.0 1.1 7.1e-16 58.0 0.3 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|389845623|ref|YP_006347862.1| - 0.00019 20.9 0.1 0.0014 18.0 0.1 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|389845623|ref|YP_006347862.1| - 0.00047 19.8 0.0 0.0012 18.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|389845623|ref|YP_006347862.1| - 0.0027 17.1 0.3 0.012 15.0 0.1 2.1 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|389845623|ref|YP_006347862.1| - 0.0064 15.6 0.0 0.018 14.1 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_10 PF12846.2 gi|389845623|ref|YP_006347862.1| - 0.0067 15.8 1.3 0.011 15.2 0.9 1.5 1 1 0 1 1 1 1 AAA-like domain cobW PF02492.14 gi|389845623|ref|YP_006347862.1| - 0.0072 15.7 0.2 0.037 13.4 0.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.10 gi|389845623|ref|YP_006347862.1| - 0.008 15.2 0.1 0.008 15.2 0.1 3.1 4 0 0 4 4 4 1 Anion-transporting ATPase AAA_33 PF13671.1 gi|389845623|ref|YP_006347862.1| - 0.017 14.9 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|389845623|ref|YP_006347862.1| - 0.019 14.6 0.0 0.043 13.4 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase SMC_N PF02463.14 gi|389845623|ref|YP_006347862.1| - 0.035 13.3 0.0 0.067 12.4 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain IZUMO PF15005.1 gi|389845623|ref|YP_006347862.1| - 0.11 12.4 1.3 0.29 11.1 0.2 2.1 2 0 0 2 2 2 0 Izumo sperm-egg fusion Thymidylate_kin PF02223.12 gi|389845623|ref|YP_006347862.1| - 0.12 11.7 0.3 0.58 9.5 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase Mcm10 PF09332.6 gi|389845623|ref|YP_006347862.1| - 0.21 10.9 1.3 0.3 10.4 0.0 1.7 2 0 0 2 2 2 0 Mcm10 replication factor SSXT PF05030.7 gi|389845623|ref|YP_006347862.1| - 0.25 10.9 2.4 0.2 11.2 0.3 1.8 2 0 0 2 2 2 0 SSXT protein (N-terminal region) AAA_18 PF13238.1 gi|389845623|ref|YP_006347862.1| - 0.59 10.4 2.6 1.3 9.3 0.1 2.8 3 1 0 3 3 3 0 AAA domain MgtE PF01769.11 gi|389845624|ref|YP_006347863.1| - 5.5e-17 62.3 8.8 5.5e-17 62.3 6.1 1.6 2 0 0 2 2 2 1 Divalent cation transporter Cation_efflux PF01545.16 gi|389845624|ref|YP_006347863.1| - 0.22 10.5 6.7 1.8 7.6 1.5 2.1 1 1 1 2 2 2 0 Cation efflux family Peptidase_M50 PF02163.17 gi|389845624|ref|YP_006347863.1| - 0.57 9.1 5.3 1.6 7.6 3.7 1.9 1 1 0 1 1 1 0 Peptidase family M50 MgtE PF01769.11 gi|389845625|ref|YP_006347864.1| - 2.9e-18 66.4 12.8 4.6e-18 65.7 8.9 1.3 1 0 0 1 1 1 1 Divalent cation transporter Gate PF07670.9 gi|389845626|ref|YP_006347865.1| - 1.2e-09 38.0 14.3 3.1e-05 23.8 1.7 2.7 2 1 0 2 2 2 2 Nucleoside recognition RNA_binding PF01877.12 gi|389845627|ref|YP_006347866.1| - 2.3e-23 82.4 0.2 4.5e-23 81.5 0.2 1.5 1 1 0 1 1 1 1 RNA binding DUF3320 PF11784.3 gi|389845627|ref|YP_006347866.1| - 0.15 11.6 0.4 0.35 10.4 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) AAA_18 PF13238.1 gi|389845628|ref|YP_006347867.1| - 6e-15 55.6 0.1 7.8e-15 55.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389845628|ref|YP_006347867.1| - 1.5e-10 41.9 0.3 2.5e-10 41.2 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|389845628|ref|YP_006347867.1| - 1.1e-09 38.2 0.0 3e-09 36.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain ADK PF00406.17 gi|389845628|ref|YP_006347867.1| - 0.00024 21.0 0.1 0.00035 20.4 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|389845628|ref|YP_006347867.1| - 0.00083 18.8 0.2 0.11 11.8 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase DRTGG PF07085.7 gi|389845628|ref|YP_006347867.1| - 0.0038 16.7 0.0 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 DRTGG domain CPT PF07931.7 gi|389845628|ref|YP_006347867.1| - 0.066 12.8 0.5 0.15 11.6 0.3 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DUF307 PF03733.8 gi|389845629|ref|YP_006347868.1| - 4.2e-10 39.8 25.7 3.3e-05 24.2 5.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) TauE PF01925.14 gi|389845629|ref|YP_006347868.1| - 0.23 10.8 15.9 0.66 9.3 3.6 2.0 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE Cpn60_TCP1 PF00118.19 gi|662859289|ref|YP_006347870.2| - 6.3e-168 559.3 7.4 7.2e-168 559.1 5.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.11 gi|662859289|ref|YP_006347870.2| - 0.018 15.3 1.2 8.5 6.7 0.2 2.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Rnk_N PF14760.1 gi|662859289|ref|YP_006347870.2| - 0.023 14.7 0.6 0.18 11.9 0.1 2.6 2 0 0 2 2 2 0 Rnk N-terminus YjeF_N PF03853.10 gi|389845632|ref|YP_006347871.1| - 5.2e-39 133.5 1.3 6.4e-39 133.2 0.9 1.1 1 0 0 1 1 1 1 YjeF-related protein N-terminus Mut7-C PF01927.11 gi|389845632|ref|YP_006347871.1| - 0.12 12.3 0.2 0.29 11.0 0.0 1.6 2 0 0 2 2 2 0 Mut7-C RNAse domain KH_1 PF00013.24 gi|389845633|ref|YP_006347872.1| - 5.6e-17 61.1 2.2 2.7e-08 33.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|389845633|ref|YP_006347872.1| - 3.5e-09 36.0 0.6 8.5e-05 22.1 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|389845633|ref|YP_006347872.1| - 1.7e-06 27.4 0.7 0.0035 16.8 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|389845633|ref|YP_006347872.1| - 0.007 15.9 2.2 1.9 8.2 0.1 3.1 3 1 1 4 4 4 2 KH domain RIO1 PF01163.17 gi|389845634|ref|YP_006347873.1| - 8.2e-63 211.1 0.1 8.2e-63 211.1 0.1 1.4 2 0 0 2 2 2 1 RIO1 family Kdo PF06293.9 gi|389845634|ref|YP_006347873.1| - 4.9e-10 38.8 0.2 8.8e-10 37.9 0.1 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|389845634|ref|YP_006347873.1| - 2e-09 37.5 1.5 6.7e-07 29.2 1.0 2.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|389845634|ref|YP_006347873.1| - 7.6e-06 25.2 0.0 2.2e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|389845634|ref|YP_006347873.1| - 0.00076 18.7 0.0 0.0013 18.0 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Toxin_67 PF15545.1 gi|389845634|ref|YP_006347873.1| - 0.024 14.4 0.3 0.055 13.3 0.2 1.5 1 0 0 1 1 1 0 Putative toxin 67 Pkinase_Tyr PF07714.12 gi|389845634|ref|YP_006347873.1| - 0.049 12.6 0.1 0.72 8.8 0.0 2.1 1 1 0 2 2 2 0 Protein tyrosine kinase eIF-1a PF01176.14 gi|389845635|ref|YP_006347874.1| - 5.7e-28 96.1 0.6 7.3e-28 95.7 0.4 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 tRNA-synt_1b PF00579.20 gi|389845636|ref|YP_006347875.1| - 1.2e-49 169.0 0.0 1.5e-49 168.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|389845636|ref|YP_006347875.1| - 0.017 13.8 0.0 4.7 5.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) PLDc_N PF13396.1 gi|389845637|ref|YP_006347876.1| - 5.3e-06 26.0 3.1 5.3e-06 26.0 2.1 3.0 2 1 1 3 3 3 1 Phospholipase_D-nuclease N-terminal DUF805 PF05656.9 gi|389845637|ref|YP_006347876.1| - 0.019 14.8 2.9 0.025 14.3 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Cytochrom_C_asm PF01578.15 gi|389845637|ref|YP_006347876.1| - 0.2 11.1 3.1 0.49 9.9 2.2 1.6 1 1 0 1 1 1 0 Cytochrome C assembly protein DUF3040 PF11239.3 gi|389845637|ref|YP_006347876.1| - 0.62 10.1 2.7 0.41 10.7 0.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3796 PF12676.2 gi|389845637|ref|YP_006347876.1| - 1 9.6 5.1 1.3 9.2 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3796) DUF460 PF04312.8 gi|389845638|ref|YP_006347877.1| - 1.3e-47 160.7 3.9 1.4e-47 160.6 0.1 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF460) AAA_13 PF13166.1 gi|389845638|ref|YP_006347877.1| - 0.0019 16.7 4.7 0.0031 16.0 3.3 1.3 1 0 0 1 1 1 1 AAA domain FlaC_arch PF05377.6 gi|389845638|ref|YP_006347877.1| - 0.0044 16.8 10.0 0.079 12.8 1.5 2.8 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) MbeD_MobD PF04899.7 gi|389845638|ref|YP_006347877.1| - 0.0066 16.3 1.4 3.9 7.4 0.4 2.7 2 0 0 2 2 2 1 MbeD/MobD like bZIP_1 PF00170.16 gi|389845638|ref|YP_006347877.1| - 0.025 14.5 15.8 0.051 13.5 5.7 2.7 2 0 0 2 2 2 0 bZIP transcription factor XLF PF09302.6 gi|389845638|ref|YP_006347877.1| - 0.038 13.7 0.3 0.038 13.7 0.2 2.3 2 0 0 2 2 2 0 XLF (XRCC4-like factor) TMF_DNA_bd PF12329.3 gi|389845638|ref|YP_006347877.1| - 0.052 13.3 24.6 0.02 14.6 11.8 2.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|389845638|ref|YP_006347877.1| - 0.053 13.9 6.6 0.85 10.0 0.8 3.0 1 1 1 2 2 2 0 SlyX Atg14 PF10186.4 gi|389845638|ref|YP_006347877.1| - 0.083 11.8 7.5 0.19 10.6 5.2 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|389845638|ref|YP_006347877.1| - 0.094 11.8 0.1 0.21 10.7 0.0 1.4 1 1 0 1 1 1 0 Reovirus sigma C capsid protein DUF342 PF03961.8 gi|389845638|ref|YP_006347877.1| - 0.11 10.8 7.1 0.21 9.9 4.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) NPV_P10 PF05531.7 gi|389845638|ref|YP_006347877.1| - 0.12 12.6 0.6 11 6.2 0.0 3.0 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.5 gi|389845638|ref|YP_006347877.1| - 0.2 11.7 4.4 0.57 10.3 3.1 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF812 PF05667.6 gi|389845638|ref|YP_006347877.1| - 0.35 9.3 15.5 0.025 13.1 6.6 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF812) MCC-bdg_PDZ PF10506.4 gi|389845638|ref|YP_006347877.1| - 0.38 10.6 6.3 1.7 8.5 1.3 2.8 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome LMBR1 PF04791.11 gi|389845638|ref|YP_006347877.1| - 0.4 9.2 4.0 0.6 8.6 2.8 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Spc7 PF08317.6 gi|389845638|ref|YP_006347877.1| - 0.4 9.2 14.6 0.15 10.6 6.8 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein HALZ PF02183.13 gi|389845638|ref|YP_006347877.1| - 0.45 10.2 8.5 0.73 9.6 2.6 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF1664 PF07889.7 gi|389845638|ref|YP_006347877.1| - 0.61 9.8 4.1 2.4 7.9 2.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|389845638|ref|YP_006347877.1| - 0.93 9.2 23.4 0.14 11.9 3.2 3.1 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Prefoldin PF02996.12 gi|389845638|ref|YP_006347877.1| - 1.3 8.7 13.5 1.5 8.4 0.8 3.7 4 0 0 4 4 3 0 Prefoldin subunit TBPIP PF07106.8 gi|389845638|ref|YP_006347877.1| - 1.3 8.5 12.4 3.1 7.3 3.4 2.5 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BLOC1_2 PF10046.4 gi|389845638|ref|YP_006347877.1| - 1.5 9.0 8.6 11 6.2 0.5 2.8 2 1 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|389845638|ref|YP_006347877.1| - 2 8.1 8.1 7.5 6.3 0.5 2.5 1 1 1 2 2 2 0 Laminin Domain II Mnd1 PF03962.10 gi|389845638|ref|YP_006347877.1| - 4.6 6.8 19.2 0.043 13.4 6.8 2.2 2 0 0 2 2 2 0 Mnd1 family DUF641 PF04859.7 gi|389845638|ref|YP_006347877.1| - 6 6.6 16.5 0.07 12.8 1.9 3.2 3 1 1 4 4 3 0 Plant protein of unknown function (DUF641) APG6 PF04111.7 gi|389845638|ref|YP_006347877.1| - 7.3 5.5 21.9 0.069 12.1 9.2 1.9 2 0 0 2 2 2 0 Autophagy protein Apg6 DivIC PF04977.10 gi|389845638|ref|YP_006347877.1| - 7.9 6.0 19.1 0.28 10.6 1.9 3.2 2 1 1 3 3 3 0 Septum formation initiator Band_7 PF01145.20 gi|389845639|ref|YP_006347878.1| - 1.1e-30 106.8 3.6 1.6e-30 106.3 2.5 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|389845639|ref|YP_006347878.1| - 0.0018 17.8 0.1 0.0061 16.1 0.1 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF3592 PF12158.3 gi|389845639|ref|YP_006347878.1| - 0.078 12.7 0.1 0.25 11.1 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) CarD_CdnL_TRCF PF02559.11 gi|389845639|ref|YP_006347878.1| - 0.094 12.7 0.7 0.26 11.3 0.2 1.8 2 0 0 2 2 2 0 CarD-like/TRCF domain DUF1675 PF07897.6 gi|389845639|ref|YP_006347878.1| - 0.29 10.9 5.9 0.44 10.3 4.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) PhzC-PhzF PF02567.11 gi|389845641|ref|YP_006347880.1| - 1.6e-62 211.2 0.0 1.8e-62 211.0 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Lactamase_B_2 PF12706.2 gi|389845642|ref|YP_006347881.1| - 3.6e-33 114.7 0.1 4.8e-33 114.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|389845642|ref|YP_006347881.1| - 2e-14 53.7 5.1 1.4e-13 50.9 3.5 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|389845642|ref|YP_006347881.1| - 0.006 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease AAA PF00004.24 gi|389845643|ref|YP_006347882.1| - 1.3e-12 48.0 0.0 2.9e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|389845643|ref|YP_006347882.1| - 3.6e-11 42.9 0.0 5.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|389845643|ref|YP_006347882.1| - 2e-08 34.4 0.3 1.1e-05 25.4 0.0 3.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389845643|ref|YP_006347882.1| - 3.6e-08 33.6 0.0 4.3e-07 30.1 0.0 2.5 1 1 2 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|389845643|ref|YP_006347882.1| - 1.7e-07 31.2 0.0 3.8e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|389845643|ref|YP_006347882.1| - 3.5e-06 26.7 0.0 5.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389845643|ref|YP_006347882.1| - 2.1e-05 24.1 0.0 9.1e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain Rep_fac_C PF08542.6 gi|389845643|ref|YP_006347882.1| - 3.1e-05 23.8 0.0 6.9e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain Sigma54_activat PF00158.21 gi|389845643|ref|YP_006347882.1| - 0.00017 21.0 0.0 0.0025 17.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|389845643|ref|YP_006347882.1| - 0.00031 21.5 0.0 0.00096 19.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|389845643|ref|YP_006347882.1| - 0.00062 19.5 0.3 0.0044 16.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|389845643|ref|YP_006347882.1| - 0.00062 20.0 0.0 0.0015 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|389845643|ref|YP_006347882.1| - 0.00074 18.9 0.0 0.0031 16.9 0.0 2.1 1 1 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|389845643|ref|YP_006347882.1| - 0.0013 18.4 0.0 0.0037 16.9 0.0 1.7 1 1 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|389845643|ref|YP_006347882.1| - 0.0021 17.0 0.0 0.0069 15.3 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_11 PF13086.1 gi|389845643|ref|YP_006347882.1| - 0.0045 16.6 0.0 0.0084 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|389845643|ref|YP_006347882.1| - 0.0062 16.1 0.9 0.023 14.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|389845643|ref|YP_006347882.1| - 0.0064 16.5 0.0 0.22 11.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|389845643|ref|YP_006347882.1| - 0.011 15.4 0.0 1.6 8.4 0.0 2.4 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.7 gi|389845643|ref|YP_006347882.1| - 0.035 13.1 0.2 0.1 11.6 0.1 1.8 1 1 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|389845643|ref|YP_006347882.1| - 0.035 13.0 0.0 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.13 gi|389845643|ref|YP_006347882.1| - 0.043 13.2 0.0 0.09 12.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|389845643|ref|YP_006347882.1| - 0.046 12.8 0.0 0.16 11.0 0.0 1.8 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI DEAD PF00270.24 gi|389845643|ref|YP_006347882.1| - 0.061 12.8 0.2 1.7 8.1 0.1 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase Rad17 PF03215.10 gi|389845643|ref|YP_006347882.1| - 0.065 11.9 0.0 0.47 9.0 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|389845643|ref|YP_006347882.1| - 0.078 12.9 0.0 0.25 11.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain DNA_pol3_delta PF06144.8 gi|389845643|ref|YP_006347882.1| - 0.08 12.4 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.17 gi|389845643|ref|YP_006347882.1| - 0.089 12.9 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_33 PF13671.1 gi|389845643|ref|YP_006347882.1| - 0.09 12.6 0.0 0.2 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|389845643|ref|YP_006347882.1| - 0.095 12.6 0.0 0.3 10.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.13 gi|389845643|ref|YP_006347882.1| - 0.14 11.6 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Se-cys_synth_N PF12390.3 gi|389845643|ref|YP_006347882.1| - 5.6 7.1 7.4 2 8.5 0.4 3.2 4 0 0 4 4 3 0 Selenocysteine synthase N terminal PS_Dcarbxylase PF02666.10 gi|389845644|ref|YP_006347883.1| - 1.9e-31 108.9 0.1 1.2e-28 99.8 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase RnfC_N PF13375.1 gi|389845644|ref|YP_006347883.1| - 0.0003 20.4 0.5 0.39 10.4 0.1 3.1 2 1 1 3 3 3 2 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.17 gi|389845644|ref|YP_006347883.1| - 0.0043 16.6 0.2 11 5.7 0.0 3.9 4 0 0 4 4 4 1 Biotin-requiring enzyme DUF2665 PF11654.3 gi|389845645|ref|YP_006347884.1| - 0.034 13.7 0.1 0.056 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) DUF2892 PF11127.3 gi|389845645|ref|YP_006347884.1| - 0.13 12.0 1.6 0.24 11.2 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Laminin_G_3 PF13385.1 gi|389845646|ref|YP_006347885.1| - 0.0066 16.6 0.0 0.0077 16.4 0.0 1.1 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily UPF0020 PF01170.13 gi|662859290|ref|YP_006347886.2| - 3.4e-28 98.4 0.0 6.1e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|662859290|ref|YP_006347886.2| - 1.1e-10 41.5 0.3 1.1e-10 41.5 0.2 2.3 2 1 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|662859290|ref|YP_006347886.2| - 2.5e-07 30.6 0.0 5e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|662859290|ref|YP_006347886.2| - 3.8e-07 29.7 0.0 5.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|662859290|ref|YP_006347886.2| - 8.1e-06 26.2 0.0 1.8e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|662859290|ref|YP_006347886.2| - 2.1e-05 25.0 0.1 4.5e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|662859290|ref|YP_006347886.2| - 0.00042 19.7 0.0 0.00063 19.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|662859290|ref|YP_006347886.2| - 0.0089 15.7 0.0 0.03 14.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|662859290|ref|YP_006347886.2| - 0.027 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|662859290|ref|YP_006347886.2| - 0.03 13.4 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|662859290|ref|YP_006347886.2| - 0.2 10.7 0.0 0.28 10.2 0.0 1.3 1 1 0 1 1 1 0 N-6 DNA Methylase DUF2157 PF09925.4 gi|389845648|ref|YP_006347887.1| - 0.52 9.9 4.6 0.13 11.8 0.8 1.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) TBP PF00352.16 gi|389845649|ref|YP_006347888.1| - 3.2e-64 212.2 0.0 2.4e-31 106.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|389845649|ref|YP_006347888.1| - 0.0042 17.1 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|389845649|ref|YP_006347888.1| - 0.04 13.2 0.6 8.6 5.7 0.0 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 Abi PF02517.11 gi|389845651|ref|YP_006347890.1| - 4.7e-14 52.2 4.1 4.7e-14 52.2 2.8 2.6 3 1 0 3 3 3 1 CAAX protease self-immunity DUF3094 PF11293.3 gi|389845651|ref|YP_006347890.1| - 0.036 13.5 1.0 0.17 11.3 0.7 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) HisG PF01634.13 gi|389845652|ref|YP_006347891.1| - 7.7e-49 165.3 0.1 1.2e-48 164.7 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|389845652|ref|YP_006347891.1| - 1.9e-27 94.9 0.1 5.1e-27 93.6 0.1 1.8 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|389845652|ref|YP_006347891.1| - 0.0042 16.7 0.0 1.3 8.5 0.0 2.4 1 1 1 2 2 2 2 NMT1/THI5 like DUF4231 PF14015.1 gi|389845653|ref|YP_006347892.1| - 0.014 15.3 0.2 0.014 15.3 0.1 2.7 2 1 2 4 4 4 0 Protein of unknown function (DUF4231) FHIPEP PF00771.15 gi|389845653|ref|YP_006347892.1| - 0.067 11.5 0.0 0.1 10.9 0.0 1.2 1 0 0 1 1 1 0 FHIPEP family PRA1 PF03208.14 gi|389845653|ref|YP_006347892.1| - 0.47 9.7 4.3 3 7.1 0.0 3.0 3 0 0 3 3 3 0 PRA1 family protein Tetraspannin PF00335.15 gi|389845653|ref|YP_006347892.1| - 2 7.6 3.7 4.2 6.5 1.6 2.1 2 1 0 2 2 2 0 Tetraspanin family MarR_2 PF12802.2 gi|389845654|ref|YP_006347893.1| - 1.4e-12 47.0 1.1 4.1e-05 23.1 0.2 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|389845654|ref|YP_006347893.1| - 4.6e-11 42.3 5.2 1.1e-05 25.0 0.8 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|389845654|ref|YP_006347893.1| - 2e-09 36.6 0.0 0.00091 18.5 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389845654|ref|YP_006347893.1| - 1.8e-07 30.7 0.0 6e-05 22.6 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389845654|ref|YP_006347893.1| - 3.2e-07 29.8 0.0 0.0029 17.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|389845654|ref|YP_006347893.1| - 5.6e-07 29.1 0.1 0.0038 16.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|389845654|ref|YP_006347893.1| - 3.1e-06 26.6 0.4 0.0036 16.8 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|389845654|ref|YP_006347893.1| - 8.2e-05 22.8 0.2 0.0016 18.7 0.1 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|389845654|ref|YP_006347893.1| - 0.032 13.7 1.2 1.4 8.4 0.1 2.7 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|389845654|ref|YP_006347893.1| - 0.032 14.0 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.7 gi|389845654|ref|YP_006347893.1| - 0.034 14.2 0.0 0.43 10.7 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein TetR_N PF00440.18 gi|389845654|ref|YP_006347893.1| - 0.061 12.9 0.0 5.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.1 gi|389845654|ref|YP_006347893.1| - 0.066 13.4 1.6 5.1 7.3 0.3 3.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|389845654|ref|YP_006347893.1| - 0.068 12.7 0.0 0.94 9.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|389845654|ref|YP_006347893.1| - 0.088 12.7 0.0 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|389845654|ref|YP_006347893.1| - 0.1 13.0 0.1 0.24 11.8 0.0 1.6 2 0 0 2 2 2 0 Replication protein A C terminal HTH_34 PF13601.1 gi|389845654|ref|YP_006347893.1| - 0.1 12.6 0.0 4.4 7.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain 7TMR-DISM_7TM PF07695.6 gi|389845655|ref|YP_006347894.1| - 0.003 17.2 4.8 0.0037 16.9 3.3 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling MASE1 PF05231.9 gi|389845655|ref|YP_006347894.1| - 0.075 12.0 5.9 0.1 11.5 4.1 1.1 1 0 0 1 1 1 0 MASE1 AzlD PF05437.7 gi|389845655|ref|YP_006347894.1| - 0.17 11.8 5.6 0.41 10.6 3.8 1.7 1 1 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) DoxX_3 PF13781.1 gi|389845655|ref|YP_006347894.1| - 0.2 12.0 4.8 0.23 11.8 3.0 1.5 1 1 0 1 1 1 0 DoxX-like family DUF2079 PF09852.4 gi|389845655|ref|YP_006347894.1| - 0.47 9.1 4.5 1.5 7.4 1.5 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2079) DUF2306 PF10067.4 gi|389845655|ref|YP_006347894.1| - 1.1 9.4 6.9 0.25 11.4 1.4 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2306) SUR7 PF06687.7 gi|389845655|ref|YP_006347894.1| - 1.1 8.7 4.7 1.6 8.2 3.3 1.3 1 1 0 1 1 1 0 SUR7/PalI family DUF4131 PF13567.1 gi|389845655|ref|YP_006347894.1| - 5.9 6.2 8.6 5.2 6.4 4.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Amidohydro_1 PF01979.15 gi|389845656|ref|YP_006347895.1| - 6.1e-46 157.5 5.8 6.1e-46 157.5 4.0 1.4 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|389845656|ref|YP_006347895.1| - 1.4e-11 43.9 0.1 7.3e-11 41.7 0.1 2.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|389845656|ref|YP_006347895.1| - 1.6e-11 44.7 17.1 2.9e-11 43.9 11.9 1.4 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|389845656|ref|YP_006347895.1| - 8.6e-05 21.6 0.0 0.00013 20.9 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase HTH_IclR PF09339.5 gi|389845657|ref|YP_006347896.1| - 4.8e-06 26.0 0.5 2.1e-05 23.9 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|389845657|ref|YP_006347896.1| - 8.5e-06 25.4 0.2 1.3e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389845657|ref|YP_006347896.1| - 0.00019 21.0 0.1 0.0003 20.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389845657|ref|YP_006347896.1| - 0.00038 20.0 0.1 0.00055 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389845657|ref|YP_006347896.1| - 0.0021 18.3 0.0 0.0032 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|389845657|ref|YP_006347896.1| - 0.0079 15.8 0.1 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|389845657|ref|YP_006347896.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|389845657|ref|YP_006347896.1| - 0.029 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|389845657|ref|YP_006347896.1| - 0.033 13.5 0.0 0.05 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|389845657|ref|YP_006347896.1| - 0.075 12.6 0.1 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) AdoHcyase_NAD PF00670.16 gi|389845658|ref|YP_006347897.1| - 2.2e-50 170.6 1.0 3.5e-50 170.0 0.4 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AdoHcyase PF05221.12 gi|389845658|ref|YP_006347897.1| - 9.3e-50 169.0 0.1 1.2e-49 168.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase 2-Hacid_dh_C PF02826.14 gi|389845658|ref|YP_006347897.1| - 6.2e-11 41.7 0.1 1.1e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|389845658|ref|YP_006347897.1| - 4.5e-06 26.1 1.1 8e-06 25.3 0.1 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|389845658|ref|YP_006347897.1| - 0.0019 18.1 0.1 0.0044 17.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|389845658|ref|YP_006347897.1| - 0.0034 17.7 0.2 0.0078 16.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|389845658|ref|YP_006347897.1| - 0.0061 16.1 0.3 0.14 11.7 0.3 2.4 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|389845658|ref|YP_006347897.1| - 0.0084 16.2 0.1 0.02 14.9 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|389845658|ref|YP_006347897.1| - 0.011 15.2 0.2 0.025 14.1 0.2 1.6 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ParBc PF02195.13 gi|389845658|ref|YP_006347897.1| - 0.088 12.9 0.0 0.63 10.1 0.0 2.4 2 0 0 2 2 2 0 ParB-like nuclease domain Hjc PF01870.13 gi|389845659|ref|YP_006347898.1| - 1.7e-28 98.0 0.0 2e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.16 gi|389845659|ref|YP_006347898.1| - 0.036 14.0 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.12 gi|389845660|ref|YP_006347899.1| - 0.00031 20.1 0.1 0.00055 19.3 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger Copper-fist PF00649.13 gi|389845660|ref|YP_006347899.1| - 0.1 11.8 2.1 6 6.1 0.0 2.4 2 0 0 2 2 2 0 Copper fist DNA binding domain DUF202 PF02656.10 gi|389845661|ref|YP_006347900.1| - 1.6 9.0 5.4 2.1 8.6 3.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF2273 PF10031.4 gi|389845661|ref|YP_006347900.1| - 8.1 6.1 11.8 9 5.9 1.8 2.6 2 1 0 2 2 2 0 Small integral membrane protein (DUF2273) DNA_primase_lrg PF04104.9 gi|662859291|ref|YP_006347901.2| - 1.4e-19 70.3 0.0 1.4e-18 67.1 0.0 2.0 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF4651 PF15513.1 gi|662859291|ref|YP_006347901.2| - 0.08 12.4 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) Zn-ribbon_8 PF09723.5 gi|389845663|ref|YP_006347902.1| - 0.18 11.7 1.0 0.44 10.5 0.7 1.7 1 0 0 1 1 1 0 Zinc ribbon domain HATPase_c PF02518.21 gi|389845664|ref|YP_006347903.1| - 3.4e-15 55.7 0.0 7.9e-15 54.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|389845664|ref|YP_006347903.1| - 1.8e-07 30.9 0.0 5e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|389845664|ref|YP_006347903.1| - 1.9e-06 27.7 0.3 4.3e-06 26.6 0.2 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|389845664|ref|YP_006347903.1| - 9.6e-06 25.3 1.8 0.0039 16.9 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|389845664|ref|YP_006347903.1| - 5.2e-05 22.9 0.2 0.00014 21.6 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|389845664|ref|YP_006347903.1| - 0.00013 21.9 5.4 0.081 12.9 3.7 2.5 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|389845664|ref|YP_006347903.1| - 0.00014 22.1 1.2 0.2 12.0 0.3 3.3 2 1 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|389845664|ref|YP_006347903.1| - 0.013 15.7 0.5 0.21 11.8 0.1 2.5 2 1 0 2 2 2 0 PAS domain PAS_7 PF12860.2 gi|389845664|ref|YP_006347903.1| - 0.11 12.4 1.4 0.41 10.6 0.0 2.3 2 0 0 2 2 2 0 PAS fold PCNA_N PF00705.13 gi|389845665|ref|YP_006347904.1| - 5.1e-10 38.9 0.4 1.2e-09 37.7 0.1 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|389845665|ref|YP_006347904.1| - 1.4e-08 34.7 0.0 3.4e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.10 gi|389845665|ref|YP_006347904.1| - 0.14 11.7 0.2 0.58 9.7 0.1 2.1 2 1 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain Rad9 PF04139.8 gi|389845665|ref|YP_006347904.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Rad9 LMWPc PF01451.16 gi|389845666|ref|YP_006347905.1| - 4.6e-32 111.2 0.1 5.2e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase FtsJ PF01728.14 gi|389845667|ref|YP_006347906.1| - 1.9e-53 181.1 0.0 2.3e-53 180.8 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|389845667|ref|YP_006347906.1| - 1e-12 47.6 0.6 1.8e-12 46.8 0.4 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|389845667|ref|YP_006347906.1| - 0.00025 20.6 0.0 0.001 18.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389845667|ref|YP_006347906.1| - 0.00044 19.9 0.0 0.0014 18.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain NSP13 PF06460.7 gi|389845667|ref|YP_006347906.1| - 0.00058 18.8 0.0 0.00089 18.2 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NSP13 Methyltransf_26 PF13659.1 gi|389845667|ref|YP_006347906.1| - 0.0015 18.5 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389845667|ref|YP_006347906.1| - 0.011 16.3 0.2 0.074 13.6 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain CmcI PF04989.7 gi|389845667|ref|YP_006347906.1| - 0.018 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase Hema_stalk PF08720.5 gi|389845667|ref|YP_006347906.1| - 0.047 13.1 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk OrfB_IS605 PF01385.14 gi|389845669|ref|YP_006347908.1| - 4.7e-65 219.1 0.0 6e-65 218.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|389845669|ref|YP_006347908.1| - 2.7e-15 55.7 0.9 5.8e-15 54.7 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Y1_Tnp PF01797.11 gi|389845670|ref|YP_006347909.1| - 5.3e-32 110.2 0.1 1.3e-29 102.5 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like DUF165 PF02592.10 gi|389845671|ref|YP_006347910.1| - 5.4e-40 136.9 7.0 5.4e-40 136.9 4.8 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Caps_synth_CapC PF14102.1 gi|389845671|ref|YP_006347910.1| - 0.22 11.6 0.2 0.22 11.6 0.2 2.9 2 1 1 3 3 3 0 Capsule biosynthesis CapC RHH_1 PF01402.16 gi|389845672|ref|YP_006347911.1| - 0.011 15.6 2.2 0.025 14.4 0.2 2.4 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|389845673|ref|YP_006347912.1| - 5e-67 225.4 36.2 5.4e-37 127.2 8.3 2.4 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) COX14 PF14880.1 gi|389845673|ref|YP_006347912.1| - 0.33 10.5 2.4 0.7 9.5 0.3 2.7 2 0 0 2 2 2 0 Cytochrome oxidase c assembly TatC PF00902.13 gi|389845674|ref|YP_006347913.1| - 2.5e-37 128.3 9.4 3e-37 128.0 6.5 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) YfhO PF09586.5 gi|389845674|ref|YP_006347913.1| - 0.11 10.4 2.9 0.15 10.0 2.0 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Polyketide_cyc2 PF10604.4 gi|389845676|ref|YP_006347915.1| - 1.8e-18 67.0 0.1 2.3e-18 66.6 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|389845676|ref|YP_006347915.1| - 2.3e-10 40.6 0.1 3.2e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|389845676|ref|YP_006347915.1| - 8.9e-08 32.1 0.0 1.4e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NEMO PF11577.3 gi|389845676|ref|YP_006347915.1| - 0.035 13.8 0.1 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO His_Phos_1 PF00300.17 gi|389845677|ref|YP_006347916.1| - 2.1e-37 128.6 0.0 2.6e-37 128.3 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Asn_synthase PF00733.16 gi|389845678|ref|YP_006347917.1| - 2e-13 50.4 0.2 3.5e-13 49.6 0.2 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|389845678|ref|YP_006347917.1| - 9.6e-11 40.8 0.1 2.4e-07 29.6 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|389845678|ref|YP_006347917.1| - 4.9e-10 38.7 0.0 7.6e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|389845678|ref|YP_006347917.1| - 4.1e-05 22.9 0.0 0.00059 19.1 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|389845678|ref|YP_006347917.1| - 0.00075 19.0 0.0 0.0056 16.2 0.0 2.1 1 1 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.14 gi|389845678|ref|YP_006347917.1| - 0.0045 16.0 0.1 0.012 14.7 0.1 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase ThiI PF02568.9 gi|389845678|ref|YP_006347917.1| - 0.027 13.9 0.0 0.073 12.5 0.0 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF208 PF02677.9 gi|389845678|ref|YP_006347917.1| - 0.062 13.0 0.1 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized BCR, COG1636 MutS_V PF00488.16 gi|389845679|ref|YP_006347918.1| - 8.8e-10 38.3 0.0 1.5e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|389845679|ref|YP_006347918.1| - 0.00084 18.9 0.7 0.014 15.0 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|389845679|ref|YP_006347918.1| - 0.0022 18.1 2.8 0.0022 18.1 1.9 3.7 4 0 0 4 4 4 1 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|389845679|ref|YP_006347918.1| - 0.0091 16.0 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family AAA_10 PF12846.2 gi|389845679|ref|YP_006347918.1| - 0.084 12.2 0.2 0.21 10.9 0.1 1.9 1 1 0 1 1 1 0 AAA-like domain AAA_21 PF13304.1 gi|389845679|ref|YP_006347918.1| - 0.2 11.6 0.0 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Acetyltransf_3 PF13302.1 gi|389845680|ref|YP_006347919.1| - 9.5e-22 77.6 0.0 1.2e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389845680|ref|YP_006347919.1| - 3.8e-07 30.0 0.0 5.6e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|389845680|ref|YP_006347919.1| - 1.1e-06 28.6 0.0 2.2e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389845680|ref|YP_006347919.1| - 5.6e-06 26.3 0.0 1.2e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389845680|ref|YP_006347919.1| - 0.0032 17.2 0.0 0.0082 15.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein AAA_16 PF13191.1 gi|389845682|ref|YP_006347921.1| - 2.6e-13 50.3 0.2 6.6e-12 45.8 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389845682|ref|YP_006347921.1| - 1.3e-08 35.0 0.0 2.6e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|389845682|ref|YP_006347921.1| - 2.1e-07 30.5 0.0 6e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|389845682|ref|YP_006347921.1| - 7e-06 26.2 0.0 1.9e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|389845682|ref|YP_006347921.1| - 0.00018 21.2 0.1 0.00048 19.8 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|389845682|ref|YP_006347921.1| - 0.00031 20.5 0.0 0.00085 19.0 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|389845682|ref|YP_006347921.1| - 0.00076 19.3 0.0 0.0013 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|389845682|ref|YP_006347921.1| - 0.00091 18.8 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|389845682|ref|YP_006347921.1| - 0.0018 16.9 0.0 0.064 11.8 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|389845682|ref|YP_006347921.1| - 0.0019 17.6 0.2 0.74 9.2 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein NACHT PF05729.7 gi|389845682|ref|YP_006347921.1| - 0.0038 16.9 0.0 0.0072 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|389845682|ref|YP_006347921.1| - 0.0042 16.9 0.0 0.013 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389845682|ref|YP_006347921.1| - 0.017 15.9 2.0 0.084 13.7 1.4 2.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|389845682|ref|YP_006347921.1| - 0.024 14.9 0.0 0.1 12.9 0.0 2.2 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|389845682|ref|YP_006347921.1| - 0.026 14.2 0.1 0.047 13.4 0.1 1.4 1 0 0 1 1 1 0 NTPase T2SE PF00437.15 gi|389845682|ref|YP_006347921.1| - 0.032 13.1 0.0 0.052 12.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|389845682|ref|YP_006347921.1| - 0.046 13.1 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_32 PF13654.1 gi|389845682|ref|YP_006347921.1| - 0.061 11.9 0.1 6 5.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|389845682|ref|YP_006347921.1| - 0.065 12.8 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|389845682|ref|YP_006347921.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|389845682|ref|YP_006347921.1| - 0.076 11.9 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|389845682|ref|YP_006347921.1| - 0.082 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|389845682|ref|YP_006347921.1| - 0.088 11.7 0.0 0.32 9.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|389845682|ref|YP_006347921.1| - 0.1 11.9 0.1 0.58 9.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|389845682|ref|YP_006347921.1| - 0.12 12.0 0.1 0.25 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|389845682|ref|YP_006347921.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|389845682|ref|YP_006347921.1| - 0.18 11.3 0.1 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rib_5-P_isom_A PF06026.9 gi|389845683|ref|YP_006347922.1| - 2.2e-59 199.6 0.0 2.8e-59 199.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|389845683|ref|YP_006347922.1| - 8.4e-07 28.7 0.1 1.3e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain DUF1931 PF09123.6 gi|389845684|ref|YP_006347923.1| - 0.00026 20.9 0.6 0.00027 20.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|389845684|ref|YP_006347923.1| - 0.0009 19.3 0.0 0.0011 19.0 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|389845684|ref|YP_006347923.1| - 0.0024 17.9 0.0 0.0037 17.2 0.0 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|389845684|ref|YP_006347923.1| - 0.049 12.7 0.1 0.05 12.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 OmdA PF13376.1 gi|389845684|ref|YP_006347923.1| - 0.13 11.9 0.3 0.17 11.5 0.2 1.4 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated AIRC PF00731.15 gi|389845685|ref|YP_006347924.1| - 3.4e-19 68.5 4.3 3.4e-19 68.5 3.0 1.8 2 0 0 2 2 2 1 AIR carboxylase DUF4189 PF13827.1 gi|389845685|ref|YP_006347924.1| - 0.13 12.5 0.5 0.28 11.4 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4189) ABC2_membrane_2 PF12679.2 gi|389845686|ref|YP_006347925.1| - 3e-22 78.7 13.7 4.3e-22 78.2 9.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389845686|ref|YP_006347925.1| - 3e-09 36.4 19.5 6e-09 35.4 13.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389845686|ref|YP_006347925.1| - 0.002 17.2 17.3 0.0026 16.8 12.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389845686|ref|YP_006347925.1| - 0.0098 15.1 9.8 0.019 14.2 5.0 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein TMEM220 PF15071.1 gi|389845686|ref|YP_006347925.1| - 6.5 7.2 7.8 2.5 8.5 2.8 2.2 2 0 0 2 2 2 0 Transmembrane family 220, helix DUF4162 PF13732.1 gi|389845687|ref|YP_006347926.1| - 2.9e-07 30.8 0.1 3.4e-07 30.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) GIY-YIG PF01541.19 gi|389845688|ref|YP_006347927.1| - 4.2e-13 49.4 0.0 4.9e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|389845688|ref|YP_006347927.1| - 0.012 16.0 0.1 0.014 15.8 0.1 1.2 1 0 0 1 1 1 0 T5orf172 domain MUG113 PF13455.1 gi|389845688|ref|YP_006347927.1| - 0.066 13.6 0.1 0.099 13.1 0.1 1.4 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 PGM_PMM_I PF02878.11 gi|389845689|ref|YP_006347928.1| - 6.9e-38 129.2 0.0 1.2e-37 128.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|389845689|ref|YP_006347928.1| - 1.6e-23 82.9 0.0 3.1e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|389845689|ref|YP_006347928.1| - 3.3e-23 82.0 0.4 7e-23 80.9 0.3 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|389845689|ref|YP_006347928.1| - 3e-13 49.5 0.5 8.1e-13 48.1 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain LisH PF08513.6 gi|389845689|ref|YP_006347928.1| - 0.12 12.1 0.0 18 5.2 0.0 2.4 2 0 0 2 2 2 0 LisH ATPgrasp_Ter PF15632.1 gi|389845689|ref|YP_006347928.1| - 0.17 10.6 0.0 0.32 9.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon HTH_20 PF12840.2 gi|389845690|ref|YP_006347929.1| - 0.00029 20.5 0.3 0.0038 17.0 0.2 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389845690|ref|YP_006347929.1| - 0.069 12.8 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Acetyltransf_7 PF13508.1 gi|389845691|ref|YP_006347930.1| - 7.3e-09 35.6 0.0 1.1e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389845691|ref|YP_006347930.1| - 5e-08 33.0 0.1 7e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389845691|ref|YP_006347930.1| - 1e-06 28.6 0.2 5.5e-06 26.3 0.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|389845691|ref|YP_006347930.1| - 0.00022 21.0 0.0 0.0068 16.2 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389845691|ref|YP_006347930.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AhpC-TSA PF00578.16 gi|389845692|ref|YP_006347931.1| - 7.2e-20 70.9 0.0 9.6e-20 70.5 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389845692|ref|YP_006347931.1| - 1.2e-12 47.5 0.0 1.7e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|389845692|ref|YP_006347931.1| - 0.0022 17.9 0.0 0.0068 16.3 0.0 1.7 1 1 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|389845692|ref|YP_006347931.1| - 0.018 14.4 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|389845692|ref|YP_006347931.1| - 0.067 13.3 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin-like Glyco_hydro_42C PF08533.5 gi|389845693|ref|YP_006347932.1| - 0.04 13.4 0.1 0.066 12.7 0.1 1.4 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain DUF3945 PF13101.1 gi|389845693|ref|YP_006347932.1| - 0.044 13.0 0.0 0.048 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) Rep_fac_C PF08542.6 gi|662859292|ref|YP_006347933.2| - 6e-22 77.4 0.1 1.3e-21 76.3 0.0 1.6 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|662859292|ref|YP_006347933.2| - 9.2e-19 67.9 0.0 5.6e-17 62.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|662859292|ref|YP_006347933.2| - 3.8e-18 65.6 0.0 1.3e-15 57.4 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|662859292|ref|YP_006347933.2| - 1e-08 34.5 0.0 7.7e-08 31.6 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|662859292|ref|YP_006347933.2| - 4.8e-08 33.1 0.4 6.5e-05 22.9 0.0 2.8 2 2 1 3 3 3 2 AAA ATPase domain Rad17 PF03215.10 gi|662859292|ref|YP_006347933.2| - 6.5e-08 31.7 0.0 0.00043 19.1 0.0 2.3 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|662859292|ref|YP_006347933.2| - 2.6e-07 30.5 0.0 4.8e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|662859292|ref|YP_006347933.2| - 5.9e-07 29.6 0.1 0.012 15.7 0.1 2.6 1 1 1 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|662859292|ref|YP_006347933.2| - 3.9e-05 23.1 0.3 0.0012 18.2 0.0 2.3 1 1 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|662859292|ref|YP_006347933.2| - 0.00043 19.8 0.0 0.00091 18.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|662859292|ref|YP_006347933.2| - 0.001 19.9 0.1 0.0053 17.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|662859292|ref|YP_006347933.2| - 0.0012 18.7 0.0 0.0027 17.5 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|662859292|ref|YP_006347933.2| - 0.0012 18.2 0.0 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|662859292|ref|YP_006347933.2| - 0.0017 17.5 0.0 0.3 10.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|662859292|ref|YP_006347933.2| - 0.0024 17.4 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|662859292|ref|YP_006347933.2| - 0.0041 16.6 0.0 1 8.8 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_29 PF13555.1 gi|662859292|ref|YP_006347933.2| - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|662859292|ref|YP_006347933.2| - 0.011 15.3 0.0 0.034 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|662859292|ref|YP_006347933.2| - 0.015 14.7 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_2 PF07724.9 gi|662859292|ref|YP_006347933.2| - 0.015 15.1 0.0 0.049 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|662859292|ref|YP_006347933.2| - 0.016 14.9 0.0 0.13 11.9 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|662859292|ref|YP_006347933.2| - 0.018 14.7 0.0 0.066 12.9 0.0 2.0 2 0 0 2 2 1 0 Part of AAA domain AAA_23 PF13476.1 gi|662859292|ref|YP_006347933.2| - 0.031 14.6 0.1 0.11 12.8 0.1 1.7 1 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|662859292|ref|YP_006347933.2| - 0.034 14.4 0.0 0.086 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|662859292|ref|YP_006347933.2| - 0.039 13.3 1.1 4.1 6.7 0.0 3.0 1 1 0 3 3 3 0 AAA-like domain MobB PF03205.9 gi|662859292|ref|YP_006347933.2| - 0.048 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SNF2_N PF00176.18 gi|662859292|ref|YP_006347933.2| - 0.054 12.2 0.0 0.46 9.2 0.0 1.9 1 1 1 2 2 2 0 SNF2 family N-terminal domain Arch_ATPase PF01637.13 gi|662859292|ref|YP_006347933.2| - 0.083 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|662859292|ref|YP_006347933.2| - 0.096 11.5 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_31 PF13614.1 gi|662859292|ref|YP_006347933.2| - 0.1 12.5 0.0 6.7 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.10 gi|662859292|ref|YP_006347933.2| - 0.11 11.5 0.0 0.24 10.4 0.0 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase RNA_helicase PF00910.17 gi|662859292|ref|YP_006347933.2| - 0.16 12.1 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase GAF_2 PF13185.1 gi|389845695|ref|YP_006347934.1| - 2e-22 80.2 4.9 2.1e-11 44.4 0.1 2.9 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.21 gi|389845695|ref|YP_006347934.1| - 2.7e-18 65.6 0.0 8.6e-18 64.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|389845695|ref|YP_006347934.1| - 3.3e-15 56.3 2.2 1.3e-07 31.7 0.0 2.9 3 0 0 3 3 3 2 GAF domain GAF PF01590.21 gi|389845695|ref|YP_006347934.1| - 6.1e-14 52.4 0.0 2.7e-08 34.0 0.0 2.8 2 0 0 2 2 2 2 GAF domain HisKA PF00512.20 gi|389845695|ref|YP_006347934.1| - 4.7e-12 45.7 0.7 4.7e-12 45.7 0.5 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|389845695|ref|YP_006347934.1| - 7e-07 28.8 0.0 2.8e-06 26.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|389845695|ref|YP_006347934.1| - 7.2e-06 26.3 0.0 2.4e-05 24.6 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|389845695|ref|YP_006347934.1| - 6.9e-05 22.5 0.0 0.00022 21.0 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|389845695|ref|YP_006347934.1| - 9.1e-05 22.4 0.1 9.1e-05 22.4 0.1 2.7 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|389845695|ref|YP_006347934.1| - 0.00024 20.7 0.3 0.00077 19.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TspO_MBR PF03073.10 gi|389845696|ref|YP_006347935.1| - 7.7e-47 158.5 19.0 8.8e-47 158.3 13.2 1.0 1 0 0 1 1 1 1 TspO/MBR family Clc-like PF07062.7 gi|389845696|ref|YP_006347935.1| - 0.27 10.4 2.1 0.42 9.8 1.4 1.3 1 0 0 1 1 1 0 Clc-like VKOR PF07884.9 gi|389845696|ref|YP_006347935.1| - 0.6 9.9 11.3 3.3 7.5 0.4 2.3 1 1 1 2 2 2 0 Vitamin K epoxide reductase family tRNA-synt_2c PF01411.14 gi|389845697|ref|YP_006347936.1| - 2e-117 392.8 0.0 2.5e-117 392.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|389845697|ref|YP_006347936.1| - 1.2e-12 47.5 0.8 2.3e-12 46.6 0.6 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|389845697|ref|YP_006347936.1| - 2e-08 33.8 5.8 4.6e-08 32.6 4.0 1.6 1 0 0 1 1 1 1 DHHA1 domain Abhydrolase_6 PF12697.2 gi|389845698|ref|YP_006347937.1| - 1e-35 123.6 9.7 1.2e-35 123.4 6.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389845698|ref|YP_006347937.1| - 6e-23 81.5 0.1 6.1e-22 78.3 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389845698|ref|YP_006347937.1| - 2.6e-17 62.9 1.2 1.8e-16 60.2 0.8 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|389845698|ref|YP_006347937.1| - 2e-05 24.3 0.0 3.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|389845698|ref|YP_006347937.1| - 0.00018 21.0 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Thioesterase PF00975.15 gi|389845698|ref|YP_006347937.1| - 0.002 18.3 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.13 gi|389845698|ref|YP_006347937.1| - 0.0067 15.7 0.1 0.96 8.6 0.0 2.3 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|389845698|ref|YP_006347937.1| - 0.02 14.1 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family Ser_hydrolase PF06821.8 gi|389845698|ref|YP_006347937.1| - 0.034 13.7 3.5 0.35 10.4 0.1 2.5 2 1 0 2 2 2 0 Serine hydrolase Ndr PF03096.9 gi|389845698|ref|YP_006347937.1| - 0.16 10.4 0.0 0.24 9.8 0.0 1.2 1 0 0 1 1 1 0 Ndr family GATase PF00117.23 gi|662859293|ref|YP_006347938.2| - 1.1e-21 77.1 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|662859293|ref|YP_006347938.2| - 6.2e-10 38.8 0.0 2e-09 37.1 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|662859293|ref|YP_006347938.2| - 0.00013 20.7 0.0 0.00017 20.4 0.0 1.2 1 0 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.19 gi|662859293|ref|YP_006347938.2| - 0.005 16.3 0.0 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|662859293|ref|YP_006347938.2| - 0.0086 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|662859293|ref|YP_006347938.2| - 0.036 13.3 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Acyl-CoA_dh_1 PF00441.19 gi|662859294|ref|YP_006347939.2| - 1.1e-32 113.2 0.9 1.5e-32 112.7 0.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|662859294|ref|YP_006347939.2| - 6.3e-23 81.5 0.0 1.7e-22 80.1 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|662859294|ref|YP_006347939.2| - 9.8e-22 76.2 0.0 2.2e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|662859294|ref|YP_006347939.2| - 4.4e-13 49.6 2.7 6.4e-13 49.1 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|662859294|ref|YP_006347939.2| - 0.002 17.5 0.2 0.0088 15.4 0.1 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal DUF2861 PF11060.3 gi|389845702|ref|YP_006347941.1| - 0.037 13.3 0.2 0.051 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2861) DUF1859 PF08948.5 gi|389845702|ref|YP_006347941.1| - 0.066 12.9 0.7 0.12 12.1 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1859) Rifin_STEVOR PF02009.11 gi|389845702|ref|YP_006347941.1| - 0.92 9.0 7.5 1.8 8.1 5.2 1.7 1 1 0 1 1 1 0 Rifin/stevor family Tim54 PF11711.3 gi|389845702|ref|YP_006347941.1| - 1.3 7.5 5.7 1 7.8 3.1 1.4 2 0 0 2 2 2 0 Inner membrane protein import complex subunit Tim54 DUF4425 PF14466.1 gi|389845703|ref|YP_006347942.1| - 0.011 15.8 3.3 0.071 13.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4425) Fer4_7 PF12838.2 gi|389845704|ref|YP_006347943.1| - 1.3e-12 47.8 21.8 6e-08 32.9 4.5 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389845704|ref|YP_006347943.1| - 3.1e-12 45.5 13.8 1.3e-07 30.9 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389845704|ref|YP_006347943.1| - 4e-10 39.1 14.4 2.3e-06 27.2 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389845704|ref|YP_006347943.1| - 9.9e-10 38.5 4.7 1.5e-09 38.0 3.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|389845704|ref|YP_006347943.1| - 7.1e-07 28.9 9.5 2.1e-06 27.4 6.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389845704|ref|YP_006347943.1| - 8.4e-07 28.5 10.5 0.0027 17.5 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|389845704|ref|YP_006347943.1| - 1.4e-06 28.0 19.8 0.00037 20.2 6.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|389845704|ref|YP_006347943.1| - 3.8e-06 26.8 5.0 6.3e-05 22.9 4.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389845704|ref|YP_006347943.1| - 5.2e-06 27.1 4.9 0.00027 21.6 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|389845704|ref|YP_006347943.1| - 8.4e-06 25.7 8.2 0.00038 20.5 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|389845704|ref|YP_006347943.1| - 1.9e-05 24.8 12.0 0.0048 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|389845704|ref|YP_006347943.1| - 2.2e-05 24.7 0.9 0.084 13.2 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389845704|ref|YP_006347943.1| - 0.00011 22.5 3.8 0.0023 18.3 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|389845704|ref|YP_006347943.1| - 0.00037 20.9 10.2 0.16 12.5 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|389845704|ref|YP_006347943.1| - 0.0016 18.7 14.0 0.029 14.7 9.7 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Glyoxalase_2 PF12681.2 gi|389845705|ref|YP_006347944.1| - 3.5e-14 53.3 0.0 4.2e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389845705|ref|YP_006347944.1| - 2e-11 43.9 0.0 2.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389845705|ref|YP_006347944.1| - 4.7e-09 36.2 0.0 1.5e-08 34.6 0.0 1.7 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF1628 PF07790.6 gi|389845706|ref|YP_006347945.1| - 0.12 13.1 0.0 0.25 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Ferritin PF00210.19 gi|389845707|ref|YP_006347946.1| - 6.9e-23 80.9 0.9 7.7e-23 80.8 0.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|389845707|ref|YP_006347946.1| - 2.2e-07 31.2 0.4 2.6e-07 31.0 0.3 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF892 PF05974.7 gi|389845707|ref|YP_006347946.1| - 0.00029 20.6 3.4 0.0014 18.4 2.3 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin-like PF12902.2 gi|389845707|ref|YP_006347946.1| - 0.00063 19.4 0.1 0.00072 19.2 0.0 1.3 1 1 0 1 1 1 1 Ferritin-like Ferritin_2 PF13668.1 gi|389845707|ref|YP_006347946.1| - 0.00082 19.3 0.2 0.00094 19.1 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|389845707|ref|YP_006347946.1| - 0.0039 17.3 1.9 0.46 10.7 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) DUF4439 PF14530.1 gi|389845707|ref|YP_006347946.1| - 0.0084 16.5 0.2 0.016 15.7 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) COG6 PF06419.6 gi|389845707|ref|YP_006347946.1| - 0.035 12.2 0.3 0.049 11.7 0.2 1.3 1 1 0 1 1 1 0 Conserved oligomeric complex COG6 Img2 PF05046.9 gi|389845707|ref|YP_006347946.1| - 0.065 13.4 0.1 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) CCG PF02754.11 gi|662859295|ref|YP_006347947.2| - 1.5e-18 66.6 0.0 2.4e-12 46.6 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_9 PF13187.1 gi|662859295|ref|YP_006347947.2| - 2.1e-11 43.8 7.3 4.5e-11 42.8 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|662859295|ref|YP_006347947.2| - 5.4e-11 42.3 6.4 5.8e-11 42.2 3.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|662859295|ref|YP_006347947.2| - 5.6e-10 38.3 13.8 6.9e-06 25.4 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|662859295|ref|YP_006347947.2| - 1.5e-08 34.8 6.1 1.5e-08 34.8 4.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|662859295|ref|YP_006347947.2| - 2.2e-07 31.1 7.3 0.0091 16.4 0.3 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|662859295|ref|YP_006347947.2| - 5.7e-07 29.2 14.5 4.8e-06 26.2 9.1 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|662859295|ref|YP_006347947.2| - 9.1e-06 25.2 20.6 3.2e-05 23.6 1.9 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|662859295|ref|YP_006347947.2| - 3.2e-05 24.2 8.1 3.2e-05 24.2 5.6 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|662859295|ref|YP_006347947.2| - 3.8e-05 23.3 3.2 3.8e-05 23.3 2.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|662859295|ref|YP_006347947.2| - 0.00015 21.8 18.6 0.0065 16.7 0.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|662859295|ref|YP_006347947.2| - 0.00053 19.7 10.4 0.053 13.3 0.5 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|662859295|ref|YP_006347947.2| - 0.0012 19.5 15.2 0.013 16.2 9.7 2.6 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|662859295|ref|YP_006347947.2| - 0.082 13.4 7.5 0.65 10.6 1.0 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain PFO_beta_C PF12367.3 gi|662859295|ref|YP_006347947.2| - 0.092 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Fer4_3 PF12798.2 gi|662859295|ref|YP_006347947.2| - 3.2 8.5 27.3 0.45 11.2 4.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|662859295|ref|YP_006347947.2| - 4.8 7.6 15.4 13 6.2 3.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiQ PF02361.11 gi|389845709|ref|YP_006347948.1| - 3e-15 56.4 6.7 4.7e-14 52.4 4.6 2.0 1 1 0 1 1 1 1 Cobalt transport protein QCR10 PF09796.4 gi|389845709|ref|YP_006347948.1| - 0.013 15.1 0.9 0.018 14.7 0.0 1.7 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) ABC_tran PF00005.22 gi|389845710|ref|YP_006347949.1| - 1.7e-26 93.1 0.0 2.4e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389845710|ref|YP_006347949.1| - 1.6e-06 28.3 0.0 0.04 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|389845710|ref|YP_006347949.1| - 2.1e-06 27.3 0.0 0.00093 18.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|389845710|ref|YP_006347949.1| - 7.8e-06 25.9 0.4 1.4e-05 25.1 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389845710|ref|YP_006347949.1| - 0.00018 20.9 0.0 0.00031 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389845710|ref|YP_006347949.1| - 0.00069 18.9 0.0 0.0028 16.9 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|389845710|ref|YP_006347949.1| - 0.00077 19.2 0.0 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|389845710|ref|YP_006347949.1| - 0.0013 18.5 0.1 0.018 14.9 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|389845710|ref|YP_006347949.1| - 0.0021 17.7 1.7 0.014 15.1 0.1 2.4 2 0 0 2 2 2 1 Part of AAA domain Zeta_toxin PF06414.7 gi|389845710|ref|YP_006347949.1| - 0.0034 16.5 0.0 0.0057 15.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|389845710|ref|YP_006347949.1| - 0.0055 16.6 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|389845710|ref|YP_006347949.1| - 0.0059 16.0 0.1 0.053 12.9 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|389845710|ref|YP_006347949.1| - 0.0059 16.4 0.2 0.022 14.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|389845710|ref|YP_006347949.1| - 0.006 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|389845710|ref|YP_006347949.1| - 0.0065 15.8 0.3 0.35 10.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|389845710|ref|YP_006347949.1| - 0.0077 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.16 gi|389845710|ref|YP_006347949.1| - 0.0094 15.1 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|389845710|ref|YP_006347949.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.1 gi|389845710|ref|YP_006347949.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|389845710|ref|YP_006347949.1| - 0.014 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|389845710|ref|YP_006347949.1| - 0.036 14.3 0.1 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|389845710|ref|YP_006347949.1| - 0.037 12.4 0.0 0.24 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|389845710|ref|YP_006347949.1| - 0.039 13.8 0.0 0.09 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|389845710|ref|YP_006347949.1| - 0.044 14.0 0.0 0.48 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|389845710|ref|YP_006347949.1| - 0.056 13.1 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 NTPase XdhC_CoxI PF02625.11 gi|389845710|ref|YP_006347949.1| - 0.062 12.9 0.1 0.31 10.6 0.0 2.1 2 0 0 2 2 2 0 XdhC and CoxI family T2SE PF00437.15 gi|389845710|ref|YP_006347949.1| - 0.08 11.8 0.1 0.23 10.3 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|389845710|ref|YP_006347949.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Hydrolase PF00702.21 gi|389845710|ref|YP_006347949.1| - 0.097 13.0 0.0 0.15 12.4 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_17 PF13207.1 gi|389845710|ref|YP_006347949.1| - 0.13 13.1 0.6 0.24 12.1 0.4 1.9 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|389845710|ref|YP_006347949.1| - 0.13 10.7 0.1 4.2 5.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class G-alpha PF00503.15 gi|389845710|ref|YP_006347949.1| - 0.15 10.7 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BioY PF02632.9 gi|389845711|ref|YP_006347950.1| - 4.7e-36 123.6 23.1 7.2e-36 123.0 16.0 1.2 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|389845711|ref|YP_006347950.1| - 1.1e-05 25.3 18.5 1.6e-05 24.8 12.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) BUD22 PF09073.5 gi|389845712|ref|YP_006347951.1| - 0.14 11.2 0.5 8.9 5.2 0.0 2.1 1 1 1 2 2 2 0 BUD22 MCM PF00493.18 gi|389845713|ref|YP_006347952.1| - 2.7e-112 374.8 5.5 1.5e-65 221.2 0.2 4.1 4 0 0 4 4 4 3 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|389845713|ref|YP_006347952.1| - 1.1e-44 150.5 0.7 2.5e-15 56.4 0.0 5.1 5 0 0 5 5 5 4 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|389845713|ref|YP_006347952.1| - 2.7e-28 98.8 0.0 1e-06 27.8 0.0 5.7 5 1 0 5 5 5 4 Intein splicing domain MCM_N PF14551.1 gi|389845713|ref|YP_006347952.1| - 3.3e-16 59.8 0.4 2.1e-15 57.2 0.1 2.6 3 0 0 3 3 2 1 MCM N-terminal domain HTH_3 PF01381.17 gi|389845713|ref|YP_006347952.1| - 4.8e-12 45.5 0.0 7.2e-07 28.9 0.0 3.8 3 0 0 3 3 3 2 Helix-turn-helix HTH_31 PF13560.1 gi|389845713|ref|YP_006347952.1| - 7.1e-11 42.1 10.5 9.1e-07 28.9 0.3 4.9 5 0 0 5 5 5 2 Helix-turn-helix domain HTH_19 PF12844.2 gi|389845713|ref|YP_006347952.1| - 1.4e-08 34.6 0.0 0.0019 18.2 0.0 4.0 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_26 PF13443.1 gi|389845713|ref|YP_006347952.1| - 0.00013 22.0 0.0 0.26 11.5 0.0 3.0 2 0 0 2 2 2 2 Cro/C1-type HTH DNA-binding domain Hint PF01079.15 gi|389845713|ref|YP_006347952.1| - 0.0002 20.6 0.0 7.5 5.6 0.0 4.2 4 0 0 4 4 4 1 Hint module HTH_Tnp_4 PF13613.1 gi|389845713|ref|YP_006347952.1| - 0.0047 16.4 0.2 0.019 14.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease MarR_2 PF12802.2 gi|389845713|ref|YP_006347952.1| - 0.0052 16.4 0.1 3.5 7.3 0.0 4.3 4 0 0 4 4 4 1 MarR family HTH_38 PF13936.1 gi|389845713|ref|YP_006347952.1| - 0.0059 16.1 0.0 0.026 14.0 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|389845713|ref|YP_006347952.1| - 0.0081 15.3 0.1 3.4 6.7 0.0 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Acyl-CoA_dh_M PF02770.14 gi|389845714|ref|YP_006347953.1| - 0.25 10.8 1.9 0.31 10.5 0.2 1.8 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, middle domain CDC37_N PF03234.9 gi|389845716|ref|YP_006347955.1| - 0.091 13.0 1.7 4.9 7.4 0.3 2.1 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding MscS_porin PF12795.2 gi|389845716|ref|YP_006347955.1| - 0.28 10.4 9.9 2.5 7.3 6.9 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain IncA PF04156.9 gi|389845716|ref|YP_006347955.1| - 0.43 10.1 10.8 12 5.4 7.5 2.1 1 1 0 1 1 1 0 IncA protein XhlA PF10779.4 gi|389845716|ref|YP_006347955.1| - 0.72 9.8 4.1 1.1 9.2 0.9 2.4 2 1 1 3 3 3 0 Haemolysin XhlA KdpC PF02669.10 gi|389845716|ref|YP_006347955.1| - 0.78 9.3 3.0 2.8 7.6 0.1 2.3 2 0 0 2 2 2 0 K+-transporting ATPase, c chain DUF2188 PF09954.4 gi|389845716|ref|YP_006347955.1| - 3.1 7.8 7.9 17 5.4 2.6 2.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) CbiA PF01656.18 gi|389845719|ref|YP_006347958.1| - 1.2e-16 60.6 0.1 1.4e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|389845719|ref|YP_006347958.1| - 3.1e-05 24.7 0.0 8.2e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|389845719|ref|YP_006347958.1| - 0.00014 21.7 0.0 0.00044 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|389845719|ref|YP_006347958.1| - 0.00075 19.3 0.0 0.0022 17.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|389845719|ref|YP_006347958.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|389845719|ref|YP_006347958.1| - 0.0024 17.0 0.0 1.6 7.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|389845719|ref|YP_006347958.1| - 0.0035 16.4 0.1 0.023 13.7 0.4 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|389845719|ref|YP_006347958.1| - 0.0047 16.0 0.4 0.036 13.1 0.3 1.9 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|389845719|ref|YP_006347958.1| - 0.039 13.8 0.0 0.093 12.6 0.0 1.6 1 1 0 1 1 1 0 ParA/MinD ATPase like AAA_18 PF13238.1 gi|389845719|ref|YP_006347958.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|389845719|ref|YP_006347958.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|389845719|ref|YP_006347958.1| - 0.17 11.2 2.4 0.86 8.9 1.7 2.1 1 1 0 1 1 1 0 AAA domain TFIIB PF00382.14 gi|662859296|ref|YP_006347959.2| - 6e-35 118.8 0.2 4e-18 64.9 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|662859296|ref|YP_006347959.2| - 2.6e-12 45.8 1.4 5e-12 44.9 0.9 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_28 PF13518.1 gi|389845721|ref|YP_006347960.1| - 0.0047 16.9 0.0 0.068 13.1 0.0 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain AAA_31 PF13614.1 gi|389845722|ref|YP_006347961.1| - 1.2e-09 38.2 0.0 2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|389845722|ref|YP_006347961.1| - 4.9e-08 32.6 0.8 6.8e-08 32.1 0.6 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|389845722|ref|YP_006347961.1| - 0.0005 19.5 0.4 0.5 9.6 0.3 2.1 2 0 0 2 2 2 2 YhjQ protein MipZ PF09140.6 gi|389845722|ref|YP_006347961.1| - 0.003 16.7 0.9 0.07 12.2 0.1 2.3 2 1 0 2 2 2 1 ATPase MipZ HIT PF01230.18 gi|389845723|ref|YP_006347962.1| - 5.1e-27 94.2 0.1 6.2e-27 94.0 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|389845723|ref|YP_006347962.1| - 1.4e-13 51.1 0.0 1.7e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|389845723|ref|YP_006347962.1| - 0.0015 18.2 0.0 0.0023 17.5 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 GalP_UDP_tr_C PF02744.12 gi|389845723|ref|YP_006347962.1| - 0.0015 18.0 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain UDG PF03167.14 gi|389845724|ref|YP_006347963.1| - 4.3e-22 78.2 0.0 5.4e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Pribosyltran_N PF13793.1 gi|389845726|ref|YP_006347965.1| - 2.6e-20 72.2 0.0 2.1e-19 69.3 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|389845726|ref|YP_006347965.1| - 2.8e-12 46.4 0.3 1.2e-11 44.4 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|389845726|ref|YP_006347965.1| - 3.8e-08 33.2 0.5 7.4e-08 32.3 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|389845726|ref|YP_006347965.1| - 0.00011 21.4 0.0 0.00018 20.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Glyco_hydro_42M PF08532.5 gi|389845726|ref|YP_006347965.1| - 0.023 13.8 0.2 0.08 12.0 0.0 1.9 3 0 0 3 3 3 0 Beta-galactosidase trimerisation domain PAS_7 PF12860.2 gi|389845726|ref|YP_006347965.1| - 0.027 14.4 0.0 1.6 8.7 0.0 2.4 1 1 1 2 2 2 0 PAS fold PRTase_2 PF15609.1 gi|389845726|ref|YP_006347965.1| - 0.067 12.4 0.1 0.38 10.0 0.1 1.9 1 1 1 2 2 2 0 Phosphoribosyl transferase SWIM PF04434.12 gi|389845728|ref|YP_006347967.1| - 0.00091 18.6 0.1 0.0015 17.9 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger TRM PF02005.11 gi|389845729|ref|YP_006347968.1| - 6.8e-93 311.5 0.0 7.6e-93 311.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|389845729|ref|YP_006347968.1| - 0.00015 21.7 2.5 0.00036 20.5 1.7 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389845729|ref|YP_006347968.1| - 0.0046 16.3 0.1 0.0083 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|389845729|ref|YP_006347968.1| - 0.011 15.1 0.1 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|389845729|ref|YP_006347968.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Zn-ribbon_8 PF09723.5 gi|389845729|ref|YP_006347968.1| - 0.02 14.8 1.1 0.049 13.6 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain PrmA PF06325.8 gi|389845729|ref|YP_006347968.1| - 0.13 11.3 0.2 0.2 10.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PAP2 PF01569.16 gi|389845732|ref|YP_006347971.1| - 1.4e-19 70.0 6.7 1.4e-19 70.0 4.6 2.9 2 2 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|389845732|ref|YP_006347971.1| - 3.2e-05 23.5 4.8 3.2e-05 23.5 3.3 1.7 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|389845732|ref|YP_006347971.1| - 0.0086 16.3 1.2 0.0086 16.3 0.9 2.2 2 0 0 2 2 2 1 PAP2 superfamily C-terminal Methyltransf_11 PF08241.7 gi|389845733|ref|YP_006347972.1| - 1.2e-18 67.3 0.0 2.1e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389845733|ref|YP_006347972.1| - 5.4e-13 48.9 0.1 1e-12 48.1 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389845733|ref|YP_006347972.1| - 9.9e-13 48.3 0.0 2.3e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389845733|ref|YP_006347972.1| - 3.4e-12 46.1 0.0 4.4e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389845733|ref|YP_006347972.1| - 8.7e-12 45.6 0.0 1.5e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389845733|ref|YP_006347972.1| - 1.9e-09 37.8 0.0 4e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389845733|ref|YP_006347972.1| - 3.5e-09 36.7 0.1 6.8e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389845733|ref|YP_006347972.1| - 1.7e-07 30.6 0.0 2.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|389845733|ref|YP_006347972.1| - 3.7e-05 22.9 0.0 5e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|389845733|ref|YP_006347972.1| - 8.5e-05 22.2 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.6 gi|389845733|ref|YP_006347972.1| - 0.00033 20.1 0.0 0.037 13.4 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CheR PF01739.13 gi|389845733|ref|YP_006347972.1| - 0.0027 17.0 0.0 0.02 14.1 0.0 1.9 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain MTS PF05175.9 gi|389845733|ref|YP_006347972.1| - 0.0097 15.3 0.0 0.026 13.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|389845733|ref|YP_006347972.1| - 0.063 12.6 0.0 0.099 12.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.11 gi|389845733|ref|YP_006347972.1| - 0.087 11.1 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Gln-synt_C PF00120.19 gi|662859299|ref|YP_006347973.2| - 2.9e-104 347.7 0.0 1.1e-103 345.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|662859299|ref|YP_006347973.2| - 2.5e-31 107.0 0.5 4.7e-30 103.0 0.0 2.5 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain AsnC_trans_reg PF01037.16 gi|389845735|ref|YP_006347974.1| - 1.1e-12 47.4 0.1 2e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|389845735|ref|YP_006347974.1| - 1.3e-12 46.9 0.1 4.1e-12 45.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389845735|ref|YP_006347974.1| - 1.2e-08 34.2 0.3 2.5e-08 33.2 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|389845735|ref|YP_006347974.1| - 1.8e-08 33.9 0.1 3.4e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389845735|ref|YP_006347974.1| - 7.7e-08 32.0 0.5 2.1e-07 30.6 0.0 1.9 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389845735|ref|YP_006347974.1| - 7.2e-07 28.7 0.1 2.3e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|389845735|ref|YP_006347974.1| - 3.2e-06 26.7 0.0 8.2e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|389845735|ref|YP_006347974.1| - 1.9e-05 24.5 0.0 9.4e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|389845735|ref|YP_006347974.1| - 6.1e-05 22.3 0.0 0.00014 21.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|389845735|ref|YP_006347974.1| - 6.2e-05 22.5 0.1 0.0004 19.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|389845735|ref|YP_006347974.1| - 0.00012 21.5 0.1 0.00037 19.9 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.7 gi|389845735|ref|YP_006347974.1| - 0.00013 21.4 0.1 0.00044 19.7 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.17 gi|389845735|ref|YP_006347974.1| - 0.00019 21.0 0.1 0.00063 19.3 0.0 1.9 3 0 0 3 3 1 1 MarR family HTH_IclR PF09339.5 gi|389845735|ref|YP_006347974.1| - 0.00042 19.8 0.1 0.00076 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|389845735|ref|YP_006347974.1| - 0.0019 17.8 0.0 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|389845735|ref|YP_006347974.1| - 0.0039 16.7 0.0 0.0087 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389845735|ref|YP_006347974.1| - 0.0042 16.9 0.0 0.0091 15.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|389845735|ref|YP_006347974.1| - 0.0047 17.2 0.1 0.052 13.8 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|389845735|ref|YP_006347974.1| - 0.0052 16.5 0.0 0.0091 15.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Mga PF05043.8 gi|389845735|ref|YP_006347974.1| - 0.0076 16.5 0.0 0.026 14.8 0.0 1.8 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_41 PF14502.1 gi|389845735|ref|YP_006347974.1| - 0.0088 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|389845735|ref|YP_006347974.1| - 0.0096 15.9 0.1 0.035 14.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|389845735|ref|YP_006347974.1| - 0.013 14.6 0.0 0.034 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|389845735|ref|YP_006347974.1| - 0.015 15.4 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|389845735|ref|YP_006347974.1| - 0.028 14.8 0.2 0.26 11.7 0.0 2.4 3 0 0 3 3 2 0 Replication protein A C terminal Rrf2 PF02082.15 gi|389845735|ref|YP_006347974.1| - 0.036 14.1 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_1 PF00126.22 gi|389845735|ref|YP_006347974.1| - 0.054 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.6 gi|389845735|ref|YP_006347974.1| - 0.075 12.3 0.2 0.19 11.0 0.0 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain GerE PF00196.14 gi|389845735|ref|YP_006347974.1| - 0.084 12.2 0.1 0.29 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|389845735|ref|YP_006347974.1| - 0.12 12.5 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.10 gi|389845735|ref|YP_006347974.1| - 0.14 12.0 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sgf11 PF08209.6 gi|662859300|ref|YP_009034585.1| - 0.0098 15.1 2.4 0.33 10.3 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|662859300|ref|YP_009034585.1| - 0.013 14.9 0.4 0.82 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|662859300|ref|YP_009034585.1| - 0.014 15.5 0.4 0.037 14.1 0.1 1.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc-ribbons_6 PF07191.7 gi|662859300|ref|YP_009034585.1| - 0.014 15.1 0.2 0.018 14.7 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.14 gi|662859300|ref|YP_009034585.1| - 0.025 14.2 0.6 0.029 14.0 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|662859300|ref|YP_009034585.1| - 0.026 14.4 2.2 1.6 8.7 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|662859300|ref|YP_009034585.1| - 0.029 14.1 1.1 0.4 10.5 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|662859300|ref|YP_009034585.1| - 0.03 13.5 0.8 5.7 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|662859300|ref|YP_009034585.1| - 0.031 14.2 1.4 0.64 10.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PHD PF00628.24 gi|662859300|ref|YP_009034585.1| - 0.037 13.7 1.9 0.08 12.6 1.3 1.5 1 1 0 1 1 1 0 PHD-finger zf-CHY PF05495.7 gi|662859300|ref|YP_009034585.1| - 0.037 14.1 0.4 0.044 13.9 0.3 1.2 1 0 0 1 1 1 0 CHY zinc finger SprT-like PF10263.4 gi|662859300|ref|YP_009034585.1| - 0.043 13.4 0.6 0.047 13.3 0.4 1.0 1 0 0 1 1 1 0 SprT-like family DZR PF12773.2 gi|662859300|ref|YP_009034585.1| - 0.047 13.5 1.9 0.097 12.4 1.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|662859300|ref|YP_009034585.1| - 0.053 13.2 1.3 1.1 8.9 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Prok-RING_1 PF14446.1 gi|662859300|ref|YP_009034585.1| - 0.053 13.2 1.3 2.4 7.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|662859300|ref|YP_009034585.1| - 0.053 13.1 0.8 0.095 12.3 0.6 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) C1_2 PF03107.11 gi|662859300|ref|YP_009034585.1| - 0.054 13.6 3.8 0.79 9.8 0.2 2.2 2 0 0 2 2 2 0 C1 domain zf-FCS PF06467.9 gi|662859300|ref|YP_009034585.1| - 0.065 12.8 0.2 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF983 PF06170.7 gi|662859300|ref|YP_009034585.1| - 0.084 13.0 0.7 3.2 7.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) C1_4 PF07975.7 gi|662859300|ref|YP_009034585.1| - 0.093 12.7 1.3 0.17 11.9 0.9 1.5 1 1 0 1 1 1 0 TFIIH C1-like domain C1_3 PF07649.7 gi|662859300|ref|YP_009034585.1| - 0.11 12.5 3.8 4 7.5 0.1 2.1 2 0 0 2 2 2 0 C1-like domain zf-C2HC_2 PF13913.1 gi|662859300|ref|YP_009034585.1| - 0.11 12.1 3.1 6.2 6.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-LITAF-like PF10601.4 gi|662859300|ref|YP_009034585.1| - 0.12 12.2 0.5 15 5.5 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-HIT PF04438.11 gi|662859300|ref|YP_009034585.1| - 0.16 11.6 4.0 0.27 10.9 0.4 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-trcl PF13451.1 gi|662859300|ref|YP_009034585.1| - 0.17 11.5 1.5 5.6 6.6 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain PyrI_C PF02748.10 gi|662859300|ref|YP_009034585.1| - 0.23 10.9 3.3 0.24 10.8 0.5 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_4 PF13717.1 gi|662859300|ref|YP_009034585.1| - 0.25 11.0 1.8 15 5.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|662859300|ref|YP_009034585.1| - 0.26 10.7 3.6 0.5 9.8 0.4 2.2 2 0 0 2 2 2 0 HypF finger zinc_ribbon_5 PF13719.1 gi|662859300|ref|YP_009034585.1| - 0.27 10.8 1.6 15 5.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF3268 PF11672.3 gi|662859300|ref|YP_009034585.1| - 0.29 11.2 1.9 5.2 7.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) Rubredoxin PF00301.15 gi|662859300|ref|YP_009034585.1| - 0.3 10.9 2.8 0.59 10.0 2.0 1.5 1 1 0 1 1 1 0 Rubredoxin Nudix_N_2 PF14803.1 gi|662859300|ref|YP_009034585.1| - 0.34 10.6 3.2 12 5.6 2.2 2.4 1 1 0 1 1 1 0 Nudix N-terminal DUF2296 PF10058.4 gi|662859300|ref|YP_009034585.1| - 0.35 10.6 2.7 0.77 9.5 1.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|662859300|ref|YP_009034585.1| - 0.39 10.5 4.7 1.2 8.9 3.4 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain BIR PF00653.16 gi|662859300|ref|YP_009034585.1| - 0.42 11.0 1.8 2.7 8.4 0.1 2.0 1 1 1 2 2 2 0 Inhibitor of Apoptosis domain DUF2757 PF10955.3 gi|662859300|ref|YP_009034585.1| - 0.47 10.6 3.9 1.1 9.4 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) DUF35_N PF12172.3 gi|662859300|ref|YP_009034585.1| - 0.93 9.4 4.3 13 5.8 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-BED PF02892.10 gi|662859300|ref|YP_009034585.1| - 1.6 8.5 3.9 10 6.0 0.4 2.1 1 1 1 2 2 2 0 BED zinc finger zf-H2C2_2 PF13465.1 gi|662859300|ref|YP_009034585.1| - 2.6 8.4 6.3 2.7 8.4 1.6 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Peptidase_M29 PF02073.10 gi|662859301|ref|YP_006347975.2| - 8.5e-115 383.6 1.9 9.6e-115 383.5 1.3 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.18 gi|662859301|ref|YP_006347975.2| - 0.037 13.6 0.0 0.088 12.4 0.0 1.7 1 0 0 1 1 1 0 Peptidase S24-like Beta_elim_lyase PF01212.16 gi|389845737|ref|YP_006347976.1| - 4.3e-86 288.6 0.9 5.1e-86 288.3 0.6 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|389845737|ref|YP_006347976.1| - 8.2e-06 25.0 0.0 0.0013 17.8 0.0 2.4 3 0 0 3 3 3 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|389845737|ref|YP_006347976.1| - 3.1e-05 22.8 0.1 5.8e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|389845737|ref|YP_006347976.1| - 0.0058 14.9 0.0 0.0095 14.2 0.0 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme FdsD PF11390.3 gi|389845737|ref|YP_006347976.1| - 0.1 12.6 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 NADH-dependant formate dehydrogenase delta subunit FdsD Cation_efflux PF01545.16 gi|389845738|ref|YP_006347977.1| - 1.5e-44 152.1 0.4 1.7e-44 151.9 0.2 1.0 1 0 0 1 1 1 1 Cation efflux family TrbC PF04956.8 gi|389845738|ref|YP_006347977.1| - 0.0095 15.9 1.9 0.034 14.1 1.3 1.9 1 0 0 1 1 1 1 TrbC/VIRB2 family PMT_2 PF13231.1 gi|389845738|ref|YP_006347977.1| - 0.029 14.2 0.4 0.085 12.7 0.3 1.7 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4131 PF13567.1 gi|389845738|ref|YP_006347977.1| - 0.12 11.8 0.3 3.2 7.1 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Metallophos_2 PF12850.2 gi|389845740|ref|YP_006347979.1| - 4.7e-22 78.5 0.1 6.6e-22 78.0 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|389845740|ref|YP_006347979.1| - 7.4e-07 28.7 0.1 0.00032 20.1 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PhoD PF09423.5 gi|389845740|ref|YP_006347979.1| - 0.03 12.9 0.0 0.035 12.6 0.0 1.2 1 0 0 1 1 1 0 PhoD-like phosphatase HTH_20 PF12840.2 gi|389845741|ref|YP_006347980.1| - 3e-12 46.1 0.2 6.8e-12 45.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389845741|ref|YP_006347980.1| - 7.4e-05 22.0 0.0 0.00015 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389845741|ref|YP_006347980.1| - 0.00014 21.4 0.0 0.00036 20.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389845741|ref|YP_006347980.1| - 0.00022 20.8 0.0 0.0024 17.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389845741|ref|YP_006347980.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|389845741|ref|YP_006347980.1| - 0.048 13.2 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TFIIE_alpha PF02002.12 gi|389845741|ref|YP_006347980.1| - 0.07 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2513 PF10711.4 gi|389845741|ref|YP_006347980.1| - 0.13 12.3 0.4 0.51 10.4 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Lamp PF01299.12 gi|389845741|ref|YP_006347980.1| - 5.1 6.1 13.4 7.3 5.6 9.3 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) HAMP PF00672.20 gi|389845742|ref|YP_006347981.1| - 0.083 13.0 0.5 0.095 12.8 0.4 1.2 1 0 0 1 1 1 0 HAMP domain CTV_P6 PF06706.6 gi|389845742|ref|YP_006347981.1| - 2.9 7.4 5.1 19 4.8 3.5 1.9 1 1 0 1 1 1 0 Citrus tristeza virus 6-kDa protein PHO4 PF01384.15 gi|389845743|ref|YP_006347982.1| - 4.6e-39 133.9 41.5 4.6e-39 133.9 28.8 1.6 1 1 0 1 1 1 1 Phosphate transporter family DUF21 PF01595.15 gi|389845744|ref|YP_006347983.1| - 4.1e-51 172.8 1.1 5.7e-51 172.4 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|389845744|ref|YP_006347983.1| - 1.1e-21 76.3 2.6 2.5e-21 75.2 1.8 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|389845744|ref|YP_006347983.1| - 2.3e-17 62.4 3.1 5.7e-08 32.4 0.1 2.6 2 0 0 2 2 2 2 CBS domain GST_N_3 PF13417.1 gi|389845745|ref|YP_006347984.1| - 5.2e-16 58.6 0.0 5.8e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|389845745|ref|YP_006347984.1| - 1e-14 54.2 0.1 1.4e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|389845745|ref|YP_006347984.1| - 4.3e-14 52.2 0.0 5e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|389845745|ref|YP_006347984.1| - 6.8e-05 22.9 0.0 8.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|389845745|ref|YP_006347984.1| - 0.011 15.9 0.1 0.012 15.8 0.0 1.2 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|389845746|ref|YP_006347985.1| - 1.9e-16 59.8 0.0 2.5e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389845746|ref|YP_006347985.1| - 1e-07 31.5 0.0 2.2e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|389845746|ref|YP_006347985.1| - 0.069 13.0 0.0 2.5 8.0 0.0 2.1 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.13 gi|389845747|ref|YP_006347986.1| - 1.4e-50 171.0 0.0 1.6e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF2957 PF11170.3 gi|389845747|ref|YP_006347986.1| - 0.074 11.6 0.1 0.1 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2957) Cas_Cas4 PF01930.12 gi|389845748|ref|YP_006347987.1| - 1.3e-05 25.1 0.0 0.0002 21.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|389845748|ref|YP_006347987.1| - 0.11 11.8 3.9 0.19 11.0 0.3 2.1 1 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily AAR2 PF05282.6 gi|389845748|ref|YP_006347987.1| - 0.17 10.7 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 AAR2 protein Spermine_synth PF01564.12 gi|389845749|ref|YP_006347988.1| - 2.8e-11 42.8 0.0 4.4e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_30 PF05430.6 gi|389845749|ref|YP_006347988.1| - 0.0085 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|389845749|ref|YP_006347988.1| - 0.016 15.8 0.0 0.031 14.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|389845749|ref|YP_006347988.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain UPF0233 PF06781.7 gi|389845750|ref|YP_006347989.1| - 1 9.0 4.1 1.3 8.7 2.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF2162 PF09930.4 gi|389845751|ref|YP_006347990.1| - 0.0034 16.5 0.2 0.0034 16.5 0.1 1.1 1 0 0 1 1 1 1 Predicted transporter (DUF2162) SHOCT PF09851.4 gi|389845752|ref|YP_006347991.1| - 8e-05 21.9 0.1 0.00011 21.5 0.1 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|389845752|ref|YP_006347991.1| - 0.0043 16.7 0.2 0.0067 16.1 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|389845752|ref|YP_006347991.1| - 0.13 12.0 0.4 0.16 11.8 0.3 1.2 1 0 0 1 1 1 0 Gas vesicle protein G PIN PF01850.16 gi|389845753|ref|YP_006347992.1| - 4.4e-10 39.9 0.0 5.5e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|389845754|ref|YP_006347993.1| - 3.2e-16 59.3 0.2 3.8e-16 59.0 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 Fe-S_biosyn PF01521.15 gi|389845754|ref|YP_006347993.1| - 0.019 14.9 0.0 0.023 14.6 0.0 1.3 1 1 0 1 1 1 0 Iron-sulphur cluster biosynthesis CitMHS PF03600.11 gi|389845757|ref|YP_006347996.1| - 3.7e-28 98.1 41.7 3.4e-18 65.3 9.2 2.1 2 0 0 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|389845757|ref|YP_006347996.1| - 6.5e-23 80.1 4.3 8.6e-14 50.8 0.3 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|389845757|ref|YP_006347996.1| - 1e-22 80.7 36.8 1.1e-13 50.9 10.3 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF4342 PF14242.1 gi|389845757|ref|YP_006347996.1| - 0.027 14.2 0.7 0.027 14.2 0.5 4.5 4 2 2 6 6 6 0 Domain of unknown function (DUF4342) DEAD PF00270.24 gi|389845758|ref|YP_006347997.1| - 4.7e-25 88.0 0.0 9e-25 87.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|389845758|ref|YP_006347997.1| - 9.7e-13 47.7 0.0 2.6e-12 46.4 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|389845758|ref|YP_006347997.1| - 7.3e-08 32.4 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|389845758|ref|YP_006347997.1| - 0.073 11.8 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Cupin_2 PF07883.6 gi|662859302|ref|YP_006347998.2| - 5.8e-18 64.1 0.1 7.3e-18 63.8 0.1 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|662859302|ref|YP_006347998.2| - 3.5e-08 32.9 0.0 5.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|662859302|ref|YP_006347998.2| - 1e-06 28.5 0.0 1.2e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|662859302|ref|YP_006347998.2| - 0.00091 19.1 0.1 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family MannoseP_isomer PF01050.13 gi|662859302|ref|YP_006347998.2| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|662859302|ref|YP_006347998.2| - 0.0077 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_6 PF12852.2 gi|662859302|ref|YP_006347998.2| - 0.0085 15.7 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|662859302|ref|YP_006347998.2| - 0.0087 15.4 0.1 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CBS PF00571.23 gi|389845760|ref|YP_006347999.1| - 1.8e-24 85.2 5.7 1.7e-14 53.2 0.3 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|389845760|ref|YP_006347999.1| - 8.4e-22 77.0 12.8 1.4e-16 60.0 2.6 2.7 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|389845760|ref|YP_006347999.1| - 1.1e-06 28.1 0.7 1.1e-06 28.1 0.5 2.8 1 1 1 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|389845760|ref|YP_006347999.1| - 0.14 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily MoCF_biosynth PF00994.19 gi|389845761|ref|YP_006348000.1| - 2e-32 111.6 0.1 2.9e-32 111.0 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF1059 PF06348.6 gi|389845762|ref|YP_006348001.1| - 3.9e-09 36.1 0.6 4.1e-09 36.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) RHH_1 PF01402.16 gi|389845764|ref|YP_006348003.1| - 1.1e-05 25.0 0.1 3.5e-05 23.5 0.1 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF4047 PF13256.1 gi|389845764|ref|YP_006348003.1| - 0.0055 16.6 1.2 0.0072 16.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4047) DUF3562 PF12085.3 gi|389845764|ref|YP_006348003.1| - 0.021 14.6 0.6 0.06 13.1 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3562) ANTAR PF03861.9 gi|389845764|ref|YP_006348003.1| - 0.05 13.2 0.1 1.3 8.6 0.0 2.4 2 0 0 2 2 2 0 ANTAR domain SYCE1 PF15233.1 gi|389845764|ref|YP_006348003.1| - 0.12 12.3 2.6 0.19 11.6 1.8 1.3 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 zf-Mss51 PF13824.1 gi|389845764|ref|YP_006348003.1| - 0.23 11.3 3.8 0.36 10.7 1.2 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Notch PF00066.12 gi|389845766|ref|YP_006348005.1| - 0.1 12.8 0.1 0.15 12.3 0.1 1.2 1 0 0 1 1 1 0 LNR domain PqqD PF05402.7 gi|389845766|ref|YP_006348005.1| - 0.14 12.1 1.1 0.83 9.7 0.8 2.2 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) NTP_transferase PF00483.18 gi|389845768|ref|YP_006348007.1| - 1.5e-41 142.3 0.0 2e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389845768|ref|YP_006348007.1| - 3.7e-09 36.8 2.7 2e-08 34.4 1.9 2.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|389845768|ref|YP_006348007.1| - 0.00012 21.6 0.3 0.0002 21.0 0.2 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase adh_short_C2 PF13561.1 gi|662859303|ref|YP_006348008.2| - 2.1e-28 99.7 0.0 2.6e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|662859303|ref|YP_006348008.2| - 2.7e-20 72.9 1.8 3.3e-20 72.6 0.9 1.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|662859303|ref|YP_006348008.2| - 1.8e-10 40.7 0.3 1.8e-10 40.7 0.2 1.4 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|662859303|ref|YP_006348008.2| - 0.016 15.1 1.6 0.031 14.2 1.1 1.7 1 1 0 1 1 1 0 NADH(P)-binding F420_oxidored PF03807.12 gi|662859303|ref|YP_006348008.2| - 0.04 14.3 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TFX_C PF14601.1 gi|389845770|ref|YP_006348009.1| - 2e-32 110.8 0.0 2.7e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|389845770|ref|YP_006348009.1| - 1.8e-05 23.9 0.2 1.8e-05 23.9 0.2 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|389845770|ref|YP_006348009.1| - 0.00011 21.4 0.1 0.00017 20.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|389845770|ref|YP_006348009.1| - 0.00026 20.3 0.1 0.00046 19.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|389845770|ref|YP_006348009.1| - 0.0032 17.0 0.1 0.0058 16.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|389845770|ref|YP_006348009.1| - 0.026 14.3 0.1 0.044 13.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix DUF2481 PF10654.4 gi|389845770|ref|YP_006348009.1| - 0.029 14.0 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_31 PF13560.1 gi|389845770|ref|YP_006348009.1| - 0.033 14.3 0.6 0.08 13.1 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|389845770|ref|YP_006348009.1| - 0.045 13.5 0.0 0.093 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|389845770|ref|YP_006348009.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase TRAM PF01938.15 gi|389845771|ref|YP_006348010.1| - 3.2e-10 39.6 0.7 4.2e-10 39.2 0.5 1.2 1 0 0 1 1 1 1 TRAM domain Radical_SAM PF04055.16 gi|662859304|ref|YP_006348012.2| - 5.7e-05 23.3 0.4 0.0012 19.0 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|662859304|ref|YP_006348012.2| - 0.0001 22.3 0.1 0.00018 21.5 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|662859304|ref|YP_006348012.2| - 0.004 17.2 0.0 0.0085 16.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S9 PF00326.16 gi|389845774|ref|YP_006348013.1| - 2.7e-44 150.9 0.4 3.9e-44 150.4 0.3 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|389845774|ref|YP_006348013.1| - 8e-13 48.3 0.0 2e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|389845774|ref|YP_006348013.1| - 6.5e-10 39.2 1.1 1.9e-09 37.7 0.8 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|389845774|ref|YP_006348013.1| - 3e-07 30.1 0.4 0.0088 15.4 0.5 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S28 PF05577.7 gi|389845774|ref|YP_006348013.1| - 4.8e-05 22.1 0.1 7.3e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 DPPIV_N PF00930.16 gi|389845774|ref|YP_006348013.1| - 0.00048 18.8 0.0 0.24 9.9 0.0 2.9 2 1 0 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region LIP PF03583.9 gi|389845774|ref|YP_006348013.1| - 0.0013 17.9 0.1 0.12 11.5 0.0 2.3 2 0 0 2 2 2 1 Secretory lipase PD40 PF07676.7 gi|389845774|ref|YP_006348013.1| - 0.006 16.2 0.7 9.7 5.9 0.0 4.5 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat Pectate_lyase22 PF14583.1 gi|389845774|ref|YP_006348013.1| - 0.0086 14.5 0.0 0.026 12.9 0.0 1.8 2 0 0 2 2 2 1 Oligogalacturonate lyase Kelch_6 PF13964.1 gi|389845774|ref|YP_006348013.1| - 0.04 14.0 0.2 5.2 7.4 0.0 2.9 2 0 0 2 2 2 0 Kelch motif Esterase_phd PF10503.4 gi|389845774|ref|YP_006348013.1| - 0.05 12.8 0.0 0.082 12.1 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_1 PF00561.15 gi|389845774|ref|YP_006348013.1| - 0.064 12.8 0.1 4.1 6.9 0.1 2.2 1 1 0 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9_N PF02897.10 gi|389845774|ref|YP_006348013.1| - 0.069 11.7 3.7 0.2 10.1 0.1 2.7 2 1 1 3 3 3 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Esterase PF00756.15 gi|389845774|ref|YP_006348013.1| - 0.078 12.3 0.0 0.21 10.9 0.0 1.7 1 0 0 1 1 1 0 Putative esterase AXE1 PF05448.7 gi|389845774|ref|YP_006348013.1| - 0.11 10.9 0.0 0.4 9.1 0.0 1.8 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|389845774|ref|YP_006348013.1| - 0.11 11.7 0.0 0.29 10.3 0.0 1.6 1 1 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|389845774|ref|YP_006348013.1| - 0.15 11.5 0.0 8.6 5.7 0.0 2.1 1 1 1 2 2 2 0 Phospholipase/Carboxylesterase DUF373 PF04123.8 gi|389845775|ref|YP_006348014.1| - 3.7e-114 381.3 6.5 4.3e-114 381.1 4.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) polyprenyl_synt PF00348.12 gi|389845776|ref|YP_006348015.1| - 2.7e-56 190.3 0.0 3.3e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase ETF_alpha PF00766.14 gi|389845777|ref|YP_006348016.1| - 6.3e-37 125.0 0.2 1.2e-36 124.1 0.1 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|389845777|ref|YP_006348016.1| - 2.2e-31 108.7 0.5 2.2e-31 108.7 0.4 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Methyltransf_6 PF03737.10 gi|389845777|ref|YP_006348016.1| - 0.037 13.9 0.4 13 5.5 0.0 2.9 3 0 0 3 3 3 0 Demethylmenaquinone methyltransferase ETF PF01012.16 gi|389845778|ref|YP_006348017.1| - 1.6e-33 115.7 3.1 2.3e-33 115.2 2.2 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain HTH_IclR PF09339.5 gi|389845779|ref|YP_006348018.1| - 0.00073 19.0 0.4 0.0025 17.3 0.0 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389845779|ref|YP_006348018.1| - 0.017 14.4 0.0 0.036 13.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389845779|ref|YP_006348018.1| - 0.049 13.3 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|389845779|ref|YP_006348018.1| - 0.11 12.1 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4115 PF13464.1 gi|662859305|ref|YP_006348019.2| - 0.065 12.8 2.1 9.9 5.8 0.1 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4115) DUF1628 PF07790.6 gi|389845781|ref|YP_006348020.1| - 1.8e-09 38.2 1.3 2.8e-09 37.5 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Methyltransf_11 PF08241.7 gi|662859306|ref|YP_006348021.2| - 2.4e-23 82.4 0.0 3.7e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|662859306|ref|YP_006348021.2| - 1.4e-17 63.6 0.0 2.5e-14 52.9 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|662859306|ref|YP_006348021.2| - 1.4e-16 60.6 0.0 1.9e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|662859306|ref|YP_006348021.2| - 1.6e-16 60.2 0.0 2.1e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|662859306|ref|YP_006348021.2| - 3e-15 56.4 0.0 4.8e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|662859306|ref|YP_006348021.2| - 2.7e-13 50.2 0.0 4.2e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|662859306|ref|YP_006348021.2| - 2.6e-12 47.3 0.0 3.9e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|662859306|ref|YP_006348021.2| - 3.5e-09 36.7 0.0 6.5e-09 35.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|662859306|ref|YP_006348021.2| - 1.9e-06 27.1 0.0 2.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|662859306|ref|YP_006348021.2| - 2.1e-06 26.9 0.0 2.7e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|662859306|ref|YP_006348021.2| - 4.9e-06 26.2 0.0 8.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|662859306|ref|YP_006348021.2| - 1.7e-05 24.2 0.0 2.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|662859306|ref|YP_006348021.2| - 0.00091 18.6 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|662859306|ref|YP_006348021.2| - 0.0011 17.7 0.0 0.0015 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.6 gi|662859306|ref|YP_006348021.2| - 0.014 14.8 0.0 0.018 14.4 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|662859306|ref|YP_006348021.2| - 0.017 13.4 0.0 0.021 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_24 PF13578.1 gi|662859306|ref|YP_006348021.2| - 0.022 15.5 0.0 0.042 14.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SBP_bac_5 PF00496.17 gi|662859306|ref|YP_006348021.2| - 0.023 13.5 0.0 0.54 9.0 0.0 2.0 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_PK PF05891.7 gi|662859306|ref|YP_006348021.2| - 0.089 12.0 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_15 PF09445.5 gi|662859306|ref|YP_006348021.2| - 0.094 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.10 gi|662859306|ref|YP_006348021.2| - 0.13 11.8 0.0 0.42 10.1 0.0 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase HrpE PF06188.7 gi|389845783|ref|YP_006348022.1| - 1.2e-05 25.2 8.0 1.4e-05 24.8 5.5 1.1 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|389845783|ref|YP_006348022.1| - 3e-05 23.8 22.8 4.1e-05 23.3 15.3 1.5 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Ish1 PF10281.4 gi|389845783|ref|YP_006348022.1| - 0.0027 17.7 0.2 2.3 8.3 0.1 2.4 2 0 0 2 2 2 2 Putative stress-responsive nuclear envelope protein DivIVA PF05103.8 gi|389845783|ref|YP_006348022.1| - 0.037 14.0 15.1 0.071 13.1 7.9 2.0 1 1 1 2 2 2 0 DivIVA protein vATP-synt_E PF01991.13 gi|389845783|ref|YP_006348022.1| - 0.046 12.9 20.0 0.02 14.2 12.5 1.4 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit DUF3552 PF12072.3 gi|389845783|ref|YP_006348022.1| - 0.075 12.2 24.0 0.9 8.7 16.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.10 gi|389845783|ref|YP_006348022.1| - 0.16 12.2 19.9 0.51 10.6 13.8 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF615 PF04751.9 gi|389845783|ref|YP_006348022.1| - 0.31 10.6 11.8 2.9 7.5 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF615) DUF883 PF05957.8 gi|389845783|ref|YP_006348022.1| - 0.33 11.3 15.3 0.54 10.6 3.7 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) PRKCSH-like PF12999.2 gi|389845783|ref|YP_006348022.1| - 0.35 10.4 7.1 0.8 9.2 2.2 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like DUF2240 PF09999.4 gi|389845783|ref|YP_006348022.1| - 0.39 10.1 6.7 0.23 10.8 1.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) ApoLp-III PF07464.6 gi|389845783|ref|YP_006348022.1| - 0.43 10.5 11.8 0.51 10.3 8.2 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) OmpH PF03938.9 gi|389845783|ref|YP_006348022.1| - 0.53 10.2 13.8 0.69 9.8 9.5 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4355 PF14265.1 gi|389845783|ref|YP_006348022.1| - 0.57 10.1 20.7 0.93 9.4 14.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) Mnd1 PF03962.10 gi|389845783|ref|YP_006348022.1| - 1.2 8.7 9.6 1.8 8.2 6.7 1.4 1 0 0 1 1 1 0 Mnd1 family Atg14 PF10186.4 gi|389845783|ref|YP_006348022.1| - 1.2 7.9 6.6 1.4 7.8 4.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3435 PF11917.3 gi|389845783|ref|YP_006348022.1| - 2.6 6.6 7.2 2.9 6.5 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) YtxH PF12732.2 gi|389845783|ref|YP_006348022.1| - 3.4 8.1 10.7 3.4e+02 1.6 7.4 2.3 1 1 0 1 1 1 0 YtxH-like protein Caudo_TAP PF02413.12 gi|389845783|ref|YP_006348022.1| - 6.5 6.9 12.7 17 5.6 5.3 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein DUF2203 PF09969.4 gi|389845783|ref|YP_006348022.1| - 6.9 6.9 7.5 10 6.3 5.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.14 gi|389845784|ref|YP_006348023.1| - 6.1e-66 222.7 27.4 2.6e-30 104.9 5.6 5.0 3 1 2 5 5 5 5 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|389845784|ref|YP_006348023.1| - 0.0088 15.8 1.2 1.7 8.5 0.0 2.3 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.15 gi|389845784|ref|YP_006348023.1| - 0.02 14.6 1.6 4.9 6.9 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit DUF4140 PF13600.1 gi|389845784|ref|YP_006348023.1| - 0.024 15.0 3.5 0.84 10.1 0.5 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) CENP-F_leu_zip PF10473.4 gi|389845784|ref|YP_006348023.1| - 0.052 13.4 4.3 3.1 7.6 0.4 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.17 gi|389845784|ref|YP_006348023.1| - 0.066 13.2 1.7 2 8.4 0.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Toxin_52 PF15605.1 gi|389845784|ref|YP_006348023.1| - 0.067 13.0 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Putative toxin 52 APG6 PF04111.7 gi|389845784|ref|YP_006348023.1| - 0.068 12.2 1.0 0.89 8.5 0.0 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Tektin PF03148.9 gi|389845784|ref|YP_006348023.1| - 0.076 11.5 1.6 1.9 6.9 0.1 2.1 2 0 0 2 2 2 0 Tektin family NTR2 PF15458.1 gi|389845784|ref|YP_006348023.1| - 0.15 11.2 3.1 1.6 7.9 0.6 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 DUF3338 PF11819.3 gi|389845784|ref|YP_006348023.1| - 0.19 11.1 0.8 1.6 8.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3338) TBPIP PF07106.8 gi|389845784|ref|YP_006348023.1| - 0.22 11.0 1.0 15 5.0 0.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tropomyosin_1 PF12718.2 gi|389845784|ref|YP_006348023.1| - 0.34 10.7 5.2 1.4 8.7 0.7 2.2 2 0 0 2 2 2 0 Tropomyosin like Ax_dynein_light PF10211.4 gi|389845784|ref|YP_006348023.1| - 0.44 10.3 2.2 8.6 6.1 0.2 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain CCDC-167 PF15188.1 gi|389845784|ref|YP_006348023.1| - 0.69 9.8 6.6 0.51 10.3 0.4 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 FlaC_arch PF05377.6 gi|389845784|ref|YP_006348023.1| - 8.9 6.3 7.8 3.2 7.7 0.7 2.8 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) ATP-synt_C PF00137.16 gi|389845785|ref|YP_006348024.1| - 8.4e-12 44.8 13.1 1.1e-11 44.4 9.1 1.2 1 0 0 1 1 1 1 ATP synthase subunit C Arm PF00514.18 gi|389845785|ref|YP_006348024.1| - 0.087 12.6 0.1 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Armadillo/beta-catenin-like repeat vATP-synt_E PF01991.13 gi|389845786|ref|YP_006348025.1| - 3.2e-47 160.3 10.8 3.7e-47 160.1 7.5 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|389845786|ref|YP_006348025.1| - 0.0029 17.4 16.3 0.0029 17.4 11.3 2.1 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) DUF3827 PF12877.2 gi|389845786|ref|YP_006348025.1| - 0.0063 14.6 3.0 0.0077 14.3 2.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3827) HrpE PF06188.7 gi|389845786|ref|YP_006348025.1| - 0.015 15.0 7.6 0.027 14.2 5.3 1.4 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E RHD3 PF05879.7 gi|389845786|ref|YP_006348025.1| - 0.044 11.7 1.0 0.049 11.5 0.7 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Fmp27_WPPW PF10359.4 gi|389845786|ref|YP_006348025.1| - 0.12 10.7 1.8 0.12 10.7 1.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain UPF0449 PF15136.1 gi|389845786|ref|YP_006348025.1| - 0.22 11.7 5.4 0.43 10.8 3.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 GCN5L1 PF06320.8 gi|389845786|ref|YP_006348025.1| - 0.32 10.8 5.9 0.48 10.2 4.1 1.3 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) OmpH PF03938.9 gi|389845786|ref|YP_006348025.1| - 2.5 8.0 12.6 4.2 7.3 8.7 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIVA PF05103.8 gi|389845786|ref|YP_006348025.1| - 7.3 6.6 13.5 76 3.3 9.3 2.4 1 1 0 1 1 1 0 DivIVA protein DUF883 PF05957.8 gi|389845786|ref|YP_006348025.1| - 8.3 6.8 14.0 3.6 8.0 0.6 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.11 gi|389845787|ref|YP_006348026.1| - 2.6e-107 358.8 0.6 3e-107 358.6 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|389845788|ref|YP_006348027.1| - 3.2e-19 69.1 0.1 3.8e-19 68.8 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|389845789|ref|YP_006348028.1| - 5e-94 313.7 0.0 6.8e-94 313.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|389845789|ref|YP_006348028.1| - 1.4e-17 64.2 0.4 2.4e-17 63.4 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|389845789|ref|YP_006348028.1| - 2.5e-12 46.8 3.6 2.5e-12 46.8 2.5 2.6 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|389845789|ref|YP_006348028.1| - 0.029 14.4 0.6 4.4 7.4 0.0 3.0 3 0 0 3 3 3 0 Peptidase family M23 AAA_22 PF13401.1 gi|389845789|ref|YP_006348028.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|389845789|ref|YP_006348028.1| - 0.16 11.6 1.8 2.8 7.7 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) QRPTase_N PF02749.11 gi|389845789|ref|YP_006348028.1| - 0.16 11.7 0.2 11 5.8 0.0 3.0 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain ATP-synt_ab PF00006.20 gi|389845790|ref|YP_006348029.1| - 8.4e-60 201.9 0.0 1.1e-59 201.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|389845790|ref|YP_006348029.1| - 4.4e-18 65.8 0.6 9.5e-18 64.7 0.5 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|389845790|ref|YP_006348029.1| - 1.1e-13 51.1 1.1 2.5e-13 50.0 0.8 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|389845790|ref|YP_006348029.1| - 0.00025 20.8 0.6 0.00097 18.9 0.4 2.1 1 0 0 1 1 1 1 HAS barrel domain PAS_9 PF13426.1 gi|389845791|ref|YP_006348030.1| - 3.8e-24 85.0 0.0 2.1e-23 82.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain HTH_10 PF04967.7 gi|389845791|ref|YP_006348030.1| - 4.6e-19 67.7 0.0 8.7e-19 66.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|389845791|ref|YP_006348030.1| - 6.5e-11 42.2 2.4 2.4e-09 37.2 0.1 3.4 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|389845791|ref|YP_006348030.1| - 3e-10 39.8 0.0 1e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|389845791|ref|YP_006348030.1| - 3.5e-09 37.3 0.1 8.1e-09 36.1 0.1 1.7 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|389845791|ref|YP_006348030.1| - 0.0001 22.0 0.0 0.00054 19.7 0.0 2.3 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|389845791|ref|YP_006348030.1| - 0.00013 22.0 0.0 0.00035 20.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|389845791|ref|YP_006348030.1| - 0.00015 21.0 0.5 0.00091 18.4 0.0 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 GAF PF01590.21 gi|389845791|ref|YP_006348030.1| - 0.00026 21.1 0.9 0.00063 19.8 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|389845791|ref|YP_006348030.1| - 0.00053 20.0 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold HTH_11 PF08279.7 gi|389845791|ref|YP_006348030.1| - 0.0049 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|389845791|ref|YP_006348030.1| - 0.0083 15.5 0.1 0.25 10.8 0.0 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 PP2C_2 PF13672.1 gi|389845791|ref|YP_006348030.1| - 0.0089 15.4 0.6 0.027 13.8 0.4 1.8 2 0 0 2 2 2 1 Protein phosphatase 2C DUF134 PF02001.11 gi|389845791|ref|YP_006348030.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 ATP-synt_D PF01813.12 gi|389845792|ref|YP_006348031.1| - 3.6e-62 209.4 11.9 4.5e-62 209.0 8.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit D TFIIS_C PF01096.13 gi|389845793|ref|YP_006348032.1| - 0.14 11.8 0.2 0.74 9.4 0.0 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) eRF1_2 PF03464.10 gi|662859307|ref|YP_006348033.2| - 2e-36 125.2 0.0 5.7e-36 123.7 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|662859307|ref|YP_006348033.2| - 4.2e-26 91.4 0.6 8.8e-26 90.4 0.1 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|662859307|ref|YP_006348033.2| - 6.8e-24 83.9 0.0 1.2e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 CbiA PF01656.18 gi|389845795|ref|YP_006348034.1| - 6.7e-27 94.1 0.7 1.3e-26 93.1 0.5 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389845795|ref|YP_006348034.1| - 9.3e-17 61.4 0.0 1.5e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|389845795|ref|YP_006348034.1| - 8e-09 35.0 0.2 0.0006 19.0 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|389845795|ref|YP_006348034.1| - 1.5e-05 24.4 0.7 0.00025 20.4 0.5 2.5 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|389845795|ref|YP_006348034.1| - 2.2e-05 23.6 1.2 0.0002 20.5 0.9 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|389845795|ref|YP_006348034.1| - 0.0012 17.9 1.6 0.0099 14.9 1.1 2.1 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|389845795|ref|YP_006348034.1| - 0.0018 18.0 0.1 0.0037 17.1 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|389845795|ref|YP_006348034.1| - 0.01 15.4 4.7 0.017 14.7 0.2 2.8 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|389845795|ref|YP_006348034.1| - 0.03 13.4 0.5 0.078 12.0 0.1 1.8 2 0 0 2 2 2 0 VirC1 protein SRP54 PF00448.17 gi|389845795|ref|YP_006348034.1| - 0.03 13.7 3.0 0.23 10.8 0.3 2.6 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain tRNA-synt_1d PF00750.14 gi|389845796|ref|YP_006348035.1| - 4.1e-58 196.8 0.0 6.3e-58 196.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|389845796|ref|YP_006348035.1| - 2.1e-35 121.2 0.0 6.9e-35 119.5 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|389845796|ref|YP_006348035.1| - 2.1e-09 37.7 0.0 8e-09 35.9 0.0 2.1 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|389845796|ref|YP_006348035.1| - 0.0065 15.1 0.0 0.23 10.0 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (K) zf-ribbon_3 PF13248.1 gi|662859308|ref|YP_006348036.2| - 0.01 15.0 0.8 1.5 8.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|662859308|ref|YP_006348036.2| - 0.012 15.2 0.3 0.016 14.9 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|662859308|ref|YP_006348036.2| - 0.013 15.2 0.3 0.015 15.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-Sec23_Sec24 PF04810.10 gi|662859308|ref|YP_006348036.2| - 0.053 13.0 0.4 0.14 11.7 0.3 1.7 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger PhnA_Zn_Ribbon PF08274.7 gi|662859308|ref|YP_006348036.2| - 0.06 13.1 0.3 0.17 11.6 0.2 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF3268 PF11672.3 gi|662859308|ref|YP_006348036.2| - 0.087 12.9 0.9 0.17 11.9 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3268) OrfB_Zn_ribbon PF07282.6 gi|662859308|ref|YP_006348036.2| - 0.19 11.4 0.7 0.34 10.5 0.5 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_5 PF13909.1 gi|662859308|ref|YP_006348036.2| - 0.21 11.8 0.1 0.21 11.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zf-RING_3 PF14369.1 gi|662859308|ref|YP_006348036.2| - 0.29 11.1 4.3 8.3 6.5 2.9 2.3 1 1 0 1 1 1 0 zinc-finger Copper-fist PF00649.13 gi|662859308|ref|YP_006348036.2| - 0.35 10.1 2.5 12 5.1 0.2 2.2 2 0 0 2 2 2 0 Copper fist DNA binding domain CTP-dep_RFKase PF01982.11 gi|389845798|ref|YP_006348037.1| - 2.8e-43 146.3 0.0 4e-43 145.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|389845798|ref|YP_006348037.1| - 1.9e-07 30.7 0.0 4.2e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|389845798|ref|YP_006348037.1| - 6.4e-06 25.7 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|389845798|ref|YP_006348037.1| - 6.9e-06 25.6 0.1 1.6e-05 24.4 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389845798|ref|YP_006348037.1| - 0.00027 20.2 0.0 0.00052 19.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389845798|ref|YP_006348037.1| - 0.00088 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|389845798|ref|YP_006348037.1| - 0.0012 18.6 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389845798|ref|YP_006348037.1| - 0.004 16.6 1.2 0.0056 16.1 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389845798|ref|YP_006348037.1| - 0.0048 16.8 0.0 0.009 15.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|389845798|ref|YP_006348037.1| - 0.0077 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|389845798|ref|YP_006348037.1| - 0.021 14.8 0.0 0.068 13.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|389845798|ref|YP_006348037.1| - 0.044 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|389845798|ref|YP_006348037.1| - 0.064 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|389845798|ref|YP_006348037.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.1 gi|389845798|ref|YP_006348037.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.7 gi|389845798|ref|YP_006348037.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DHBP_synthase PF00926.14 gi|389845799|ref|YP_006348038.1| - 8.9e-58 194.7 0.0 1e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Epimerase PF01370.16 gi|389845800|ref|YP_006348039.1| - 1.6e-21 76.8 0.0 2e-21 76.5 0.0 1.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389845800|ref|YP_006348039.1| - 2.3e-09 37.5 2.0 2.3e-09 37.5 1.4 1.7 1 1 1 2 2 2 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|389845800|ref|YP_006348039.1| - 1.3e-07 30.6 0.0 2.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|389845800|ref|YP_006348039.1| - 1.4e-07 30.7 0.1 1.8e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|389845800|ref|YP_006348039.1| - 1e-06 27.8 0.0 0.0018 17.2 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein KR PF08659.5 gi|389845800|ref|YP_006348039.1| - 1.8e-05 24.4 1.9 0.054 13.1 0.1 2.7 2 1 1 3 3 3 2 KR domain NmrA PF05368.8 gi|389845800|ref|YP_006348039.1| - 0.00032 20.0 0.1 0.00049 19.4 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|389845800|ref|YP_006348039.1| - 0.0021 17.9 6.6 0.027 14.4 1.9 2.8 2 1 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|389845800|ref|YP_006348039.1| - 0.076 11.9 0.9 11 4.8 1.1 3.0 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein Aminotran_4 PF01063.14 gi|389845801|ref|YP_006348040.1| - 1.6e-45 155.3 0.0 1.9e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV Nif11 PF07862.6 gi|389845801|ref|YP_006348040.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function DUF502 PF04367.8 gi|389845802|ref|YP_006348041.1| - 1e-19 70.2 0.3 1e-19 70.2 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF502) BPD_transp_2 PF02653.11 gi|389845802|ref|YP_006348041.1| - 0.08 11.8 5.2 0.11 11.4 3.6 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component ABC2_membrane_3 PF12698.2 gi|389845802|ref|YP_006348041.1| - 1.6 7.6 8.9 2.8 6.8 6.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Pro_dh PF01619.13 gi|389845803|ref|YP_006348042.1| - 2.2e-37 128.7 0.0 5.3e-37 127.4 0.0 1.5 1 1 0 1 1 1 1 Proline dehydrogenase DUF46 PF01864.12 gi|389845804|ref|YP_006348043.1| - 1.4e-47 161.7 1.1 1.7e-47 161.5 0.8 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|389845804|ref|YP_006348043.1| - 3.8e-05 23.4 1.7 3.8e-05 23.4 1.2 2.2 1 1 1 2 2 2 1 Cytidylyltransferase family CcmD PF04995.9 gi|389845804|ref|YP_006348043.1| - 0.16 11.7 4.3 0.29 10.9 0.0 2.9 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) Pribosyltran PF00156.22 gi|389845805|ref|YP_006348044.1| - 2.1e-10 40.3 6.0 6.7e-10 38.7 4.2 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|389845805|ref|YP_006348044.1| - 0.00011 21.4 0.2 0.00014 21.1 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|389845805|ref|YP_006348044.1| - 0.022 14.0 0.8 0.033 13.5 0.2 1.5 1 1 1 2 2 2 0 Phosphoribosyl transferase Pribosyltran PF00156.22 gi|389845806|ref|YP_006348045.1| - 2.2e-13 50.0 0.2 3.2e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|389845806|ref|YP_006348045.1| - 0.0056 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|389845806|ref|YP_006348045.1| - 0.07 13.3 0.4 0.15 12.2 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Xan_ur_permease PF00860.15 gi|389845807|ref|YP_006348046.1| - 1.8e-38 132.0 46.4 4.3e-38 130.8 32.2 1.7 1 1 0 1 1 1 1 Permease family Arylsulfotrans PF05935.6 gi|389845808|ref|YP_006348047.1| - 5.1e-13 48.3 4.9 5.9e-12 44.8 1.7 2.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|389845808|ref|YP_006348047.1| - 3.9e-07 29.5 1.2 6.1e-05 22.3 0.5 3.2 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.1 gi|389845808|ref|YP_006348047.1| - 8e-07 28.7 2.7 0.002 17.6 0.1 2.6 2 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389845808|ref|YP_006348047.1| - 0.0018 17.7 1.5 1.4 8.5 0.2 3.5 3 0 0 3 3 3 2 PQQ enzyme repeat DUF504 PF04457.7 gi|389845808|ref|YP_006348047.1| - 0.022 14.9 0.8 0.09 12.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF504) NHL PF01436.16 gi|389845808|ref|YP_006348047.1| - 0.075 13.0 1.6 3.9 7.6 0.0 3.1 3 0 0 3 3 3 0 NHL repeat GspH PF12019.3 gi|389845808|ref|YP_006348047.1| - 0.17 12.0 4.2 0.16 12.1 0.3 2.6 2 1 1 3 3 3 0 Type II transport protein GspH GST_N_3 PF13417.1 gi|389845809|ref|YP_006348048.1| - 3.3e-13 49.6 0.0 3.6e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|389845809|ref|YP_006348048.1| - 9e-11 41.6 0.0 1.5e-10 40.9 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|389845809|ref|YP_006348048.1| - 6e-10 38.9 0.0 7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|389845809|ref|YP_006348048.1| - 0.00048 20.3 0.2 0.00058 20.0 0.2 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|389845809|ref|YP_006348048.1| - 0.012 15.7 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain HTH_3 PF01381.17 gi|662859309|ref|YP_006348049.2| - 6.4e-13 48.3 0.0 1.1e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|662859309|ref|YP_006348049.2| - 3.6e-08 33.3 0.0 6.5e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|662859309|ref|YP_006348049.2| - 2.7e-07 30.6 0.1 6.3e-07 29.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|662859309|ref|YP_006348049.2| - 0.00011 21.6 0.0 0.0003 20.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|662859309|ref|YP_006348049.2| - 0.00013 21.5 0.0 0.00037 20.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|662859309|ref|YP_006348049.2| - 0.00018 21.0 0.1 0.00036 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|662859309|ref|YP_006348049.2| - 0.0011 18.9 0.1 0.0023 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|662859309|ref|YP_006348049.2| - 0.0047 16.2 0.1 0.0099 15.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|662859309|ref|YP_006348049.2| - 0.03 13.8 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|662859309|ref|YP_006348049.2| - 0.046 13.5 0.0 0.59 9.9 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|662859309|ref|YP_006348049.2| - 0.069 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|662859309|ref|YP_006348049.2| - 0.074 12.8 0.1 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1743 PF08489.6 gi|389845811|ref|YP_006348050.1| - 1.4e-34 118.3 0.0 2.4e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) IBR PF01485.16 gi|389845811|ref|YP_006348050.1| - 0.0021 17.8 0.3 0.0036 17.1 0.2 1.4 1 0 0 1 1 1 1 IBR domain tRNA_anti-codon PF01336.20 gi|389845811|ref|YP_006348050.1| - 0.0021 17.8 0.0 0.0048 16.7 0.0 1.6 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|389845811|ref|YP_006348050.1| - 0.0037 17.1 0.0 0.0063 16.3 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|389845811|ref|YP_006348050.1| - 0.0073 15.9 0.8 0.015 14.9 0.6 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|389845811|ref|YP_006348050.1| - 0.088 12.5 0.2 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|389845811|ref|YP_006348050.1| - 0.1 12.4 2.0 0.21 11.3 1.4 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|389845811|ref|YP_006348050.1| - 0.11 12.3 0.7 0.22 11.3 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.14 gi|389845811|ref|YP_006348050.1| - 0.21 11.3 0.3 0.37 10.4 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|389845811|ref|YP_006348050.1| - 0.45 10.5 3.5 17 5.4 0.2 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|389845811|ref|YP_006348050.1| - 0.92 9.0 4.9 1.9 8.0 3.4 1.5 1 0 0 1 1 1 0 InsA N-terminal domain Big_1 PF02369.11 gi|389845812|ref|YP_006348051.1| - 9.2e-05 22.2 0.5 0.00014 21.7 0.4 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|389845812|ref|YP_006348051.1| - 0.00033 20.6 1.2 0.00064 19.7 0.8 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|389845812|ref|YP_006348051.1| - 0.066 13.2 0.3 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) YtkA PF13115.1 gi|389845812|ref|YP_006348051.1| - 0.11 12.9 0.6 0.2 12.0 0.4 1.5 1 1 0 1 1 1 0 YtkA-like AAA_10 PF12846.2 gi|389845813|ref|YP_006348052.1| - 1.5e-09 37.7 0.1 0.00048 19.6 0.0 2.3 1 1 1 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|389845813|ref|YP_006348052.1| - 3.4e-07 28.9 0.1 0.007 14.7 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|389845813|ref|YP_006348052.1| - 5.1e-06 26.1 0.2 0.0045 16.4 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|389845813|ref|YP_006348052.1| - 8.9e-06 25.6 0.0 2.1e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|389845813|ref|YP_006348052.1| - 0.023 14.2 0.2 0.061 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Helicase_RecD PF05127.9 gi|389845813|ref|YP_006348052.1| - 0.045 13.4 0.4 0.11 12.0 0.1 1.8 2 0 0 2 2 2 0 Helicase Zot PF05707.7 gi|389845813|ref|YP_006348052.1| - 0.054 12.9 0.0 0.91 8.9 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ABC_tran PF00005.22 gi|389845813|ref|YP_006348052.1| - 0.057 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.24 gi|389845813|ref|YP_006348052.1| - 0.06 13.5 0.1 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|389845813|ref|YP_006348052.1| - 0.079 12.0 0.1 0.17 10.9 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|389845813|ref|YP_006348052.1| - 0.11 11.1 0.0 3.4 6.1 0.0 2.5 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|389845813|ref|YP_006348052.1| - 0.12 12.4 1.0 0.36 10.8 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|389845813|ref|YP_006348052.1| - 0.13 12.4 0.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain CRCB PF02537.10 gi|389845814|ref|YP_006348053.1| - 2.9e-20 72.3 19.6 3.3e-20 72.1 13.6 1.0 1 0 0 1 1 1 1 CrcB-like protein SpecificRecomb PF10136.4 gi|389845814|ref|YP_006348053.1| - 1.5 6.7 6.0 0.46 8.4 2.2 1.5 1 1 1 2 2 2 0 Site-specific recombinase CRCB PF02537.10 gi|389845815|ref|YP_006348054.1| - 2.6e-22 78.9 11.4 3.1e-22 78.6 7.9 1.1 1 0 0 1 1 1 1 CrcB-like protein Dispanin PF04505.7 gi|389845815|ref|YP_006348054.1| - 0.096 12.2 1.7 0.1 12.1 0.2 1.8 1 1 0 1 1 1 0 Interferon-induced transmembrane protein DUF456 PF04306.8 gi|389845815|ref|YP_006348054.1| - 0.36 10.8 16.1 0.48 10.4 11.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Gly-zipper_Omp PF13488.1 gi|389845815|ref|YP_006348054.1| - 9 6.0 25.9 0.19 11.4 4.7 3.3 3 0 0 3 3 3 0 Glycine zipper RNA_pol_Rpb5_C PF01191.14 gi|389845817|ref|YP_006348056.1| - 2.5e-27 94.2 0.9 2.8e-27 94.1 0.6 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|389845817|ref|YP_006348056.1| - 0.0052 16.4 0.3 0.12 12.1 0.2 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) RHH_3 PF12651.2 gi|389845817|ref|YP_006348056.1| - 0.04 13.6 0.2 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain RNA_pol_Rpb2_1 PF04563.10 gi|389845818|ref|YP_006348057.1| - 5.6e-53 178.8 0.0 6.7e-53 178.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|389845818|ref|YP_006348057.1| - 1.6e-27 96.1 0.1 2.4e-27 95.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|389845818|ref|YP_006348057.1| - 4.4e-23 80.8 0.0 8.6e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|389845819|ref|YP_006348058.1| - 5.8e-122 407.1 0.0 8.1e-122 406.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_4 PF04566.8 gi|389845819|ref|YP_006348058.1| - 3.6e-26 90.7 1.3 2.1e-25 88.2 0.6 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_7 PF04560.15 gi|389845819|ref|YP_006348058.1| - 3.6e-25 88.0 0.0 6.3e-25 87.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|389845819|ref|YP_006348058.1| - 1e-12 47.7 3.7 2.2e-12 46.7 2.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|389845820|ref|YP_006348059.1| - 6.5e-87 291.9 0.0 1.2e-86 291.0 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|389845820|ref|YP_006348059.1| - 5.3e-66 221.6 0.1 8.4e-66 221.0 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|389845820|ref|YP_006348059.1| - 2.2e-30 104.5 0.0 4.4e-30 103.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|389845820|ref|YP_006348059.1| - 9.3e-29 100.5 0.0 1.7e-28 99.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|389845820|ref|YP_006348059.1| - 2e-28 99.1 0.0 3.5e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 zf-ribbon_3 PF13248.1 gi|389845820|ref|YP_006348059.1| - 4.5 6.6 6.9 0.46 9.7 0.8 2.4 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|389845821|ref|YP_006348060.1| - 1.3e-49 168.9 0.2 1.7e-49 168.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 KH_2 PF07650.12 gi|389845823|ref|YP_006348062.1| - 1.7e-14 53.1 0.0 3.8e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|389845823|ref|YP_006348062.1| - 1.4e-10 40.8 0.0 3.5e-10 39.5 0.0 1.6 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|389845823|ref|YP_006348062.1| - 6.8e-07 28.8 0.0 0.00094 18.7 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|389845823|ref|YP_006348062.1| - 3.7e-05 23.2 0.0 0.029 14.0 0.0 2.6 3 0 0 3 3 3 2 KH domain YadA_head PF05658.9 gi|389845823|ref|YP_006348062.1| - 0.28 11.4 4.3 1.8 8.9 0.1 2.5 2 0 0 2 2 2 0 Head domain of trimeric autotransporter adhesin Ribosom_S12_S23 PF00164.20 gi|389845825|ref|YP_006348064.1| - 5.2e-41 138.9 0.3 6e-41 138.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|389845826|ref|YP_006348065.1| - 1.9e-35 121.6 2.9 2.3e-35 121.3 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.4 gi|389845826|ref|YP_006348065.1| - 0.0084 15.6 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2420) RNA_pol_A_bac PF01000.21 gi|389845827|ref|YP_006348066.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain GTP_EFTU PF00009.22 gi|662859310|ref|YP_006348067.2| - 1.4e-61 207.1 0.2 2.3e-61 206.5 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.19 gi|662859310|ref|YP_006348067.2| - 8.3e-24 83.2 0.0 3.8e-23 81.1 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.13 gi|662859310|ref|YP_006348067.2| - 1.6e-23 82.5 0.0 4.6e-23 81.0 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|662859310|ref|YP_006348067.2| - 6.5e-22 77.1 0.3 6.5e-22 77.1 0.2 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|662859310|ref|YP_006348067.2| - 9.3e-15 54.5 1.3 4.5e-14 52.3 0.5 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|662859310|ref|YP_006348067.2| - 5.5e-05 23.0 0.1 0.00021 21.1 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|662859310|ref|YP_006348067.2| - 0.056 12.6 0.1 0.19 10.9 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|662859310|ref|YP_006348067.2| - 0.13 11.5 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 Ras family ACT PF01842.20 gi|389845829|ref|YP_006348068.1| - 5.4e-06 25.7 0.6 0.002 17.5 0.0 2.7 2 1 1 3 3 3 2 ACT domain Homoserine_dh PF00742.14 gi|389845830|ref|YP_006348069.1| - 1.3e-48 165.0 0.2 1.7e-48 164.6 0.2 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|389845830|ref|YP_006348069.1| - 1.4e-06 28.7 0.0 3.1e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|389845830|ref|YP_006348069.1| - 5.8e-06 26.0 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.1 gi|389845830|ref|YP_006348069.1| - 0.0047 16.9 0.2 0.0095 15.9 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding Methyltransf_23 PF13489.1 gi|389845830|ref|YP_006348069.1| - 0.095 12.4 0.0 1.5 8.5 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|389845830|ref|YP_006348069.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GTP_EFTU PF00009.22 gi|389845831|ref|YP_006348070.1| - 5.8e-57 192.1 0.0 7.8e-57 191.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|389845831|ref|YP_006348070.1| - 2.1e-31 108.0 0.1 6.7e-31 106.3 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|389845831|ref|YP_006348070.1| - 1e-18 67.1 3.2 6.1e-18 64.6 0.9 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|389845831|ref|YP_006348070.1| - 1.9e-07 31.0 0.0 3.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|389845831|ref|YP_006348070.1| - 8.8e-06 25.2 0.1 3.2e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|389845831|ref|YP_006348070.1| - 3.6e-05 24.2 0.0 0.0021 18.5 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|389845831|ref|YP_006348070.1| - 0.00016 20.8 0.1 0.025 13.6 0.0 2.3 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|389845831|ref|YP_006348070.1| - 0.012 14.8 0.0 0.48 9.6 0.0 2.3 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|389845831|ref|YP_006348070.1| - 0.017 14.1 0.2 0.039 12.9 0.0 1.6 2 0 0 2 2 2 0 Septin Dynamin_N PF00350.18 gi|389845831|ref|YP_006348070.1| - 0.059 13.1 0.1 3.8 7.3 0.0 2.4 1 1 0 1 1 1 0 Dynamin family FeoB_N PF02421.13 gi|389845831|ref|YP_006348070.1| - 0.062 12.5 0.2 1.7 7.9 0.1 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S10 PF00338.17 gi|389845832|ref|YP_006348071.1| - 6.6e-28 96.4 0.0 7.2e-28 96.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e AAA_22 PF13401.1 gi|389845833|ref|YP_006348072.1| - 0.074 13.1 0.0 0.09 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PAS_4 PF08448.5 gi|389845834|ref|YP_006348073.1| - 5.8e-32 109.9 2.0 6.2e-18 64.8 0.1 2.4 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|389845834|ref|YP_006348073.1| - 6.8e-22 77.5 0.1 2.5e-20 72.5 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.1 gi|389845834|ref|YP_006348073.1| - 2e-21 76.3 1.4 1.3e-10 41.5 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|389845834|ref|YP_006348073.1| - 6.7e-15 54.8 0.5 1.4e-07 31.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|389845834|ref|YP_006348073.1| - 3.5e-12 45.6 0.6 1.2e-05 24.9 0.1 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|389845834|ref|YP_006348073.1| - 2.6e-07 30.6 8.1 0.0013 18.7 0.2 4.2 2 2 1 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|389845834|ref|YP_006348073.1| - 1.3e-06 28.5 0.4 0.00012 22.1 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|389845834|ref|YP_006348073.1| - 6.2e-06 26.4 0.0 0.033 14.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|389845834|ref|YP_006348073.1| - 2.7e-05 24.6 0.3 9.9e-05 22.8 0.1 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|389845834|ref|YP_006348073.1| - 0.00044 20.2 0.0 1.3 9.1 0.0 2.8 2 1 0 2 2 2 2 PAS fold GAF PF01590.21 gi|389845834|ref|YP_006348073.1| - 0.033 14.3 0.0 0.079 13.0 0.0 1.7 1 0 0 1 1 1 0 GAF domain Snurportin1 PF11538.3 gi|389845834|ref|YP_006348073.1| - 7.1 6.4 9.0 19 5.1 0.6 2.7 2 0 0 2 2 2 0 Snurportin1 Prok-RING_1 PF14446.1 gi|389845835|ref|YP_006348074.1| - 0.014 15.1 1.1 0.023 14.4 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-P11 PF03854.9 gi|389845835|ref|YP_006348074.1| - 0.14 11.6 0.2 0.21 11.1 0.2 1.3 1 0 0 1 1 1 0 P-11 zinc finger DUF389 PF04087.9 gi|389845836|ref|YP_006348075.1| - 0.026 14.4 0.4 0.03 14.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF389) DUF2613 PF11021.3 gi|389845836|ref|YP_006348075.1| - 0.31 10.7 0.3 0.31 10.7 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) Gly-zipper_OmpA PF13436.1 gi|389845836|ref|YP_006348075.1| - 0.4 10.3 2.2 0.57 9.8 1.4 1.3 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF3353 PF11833.3 gi|389845836|ref|YP_006348075.1| - 0.42 10.0 2.4 0.49 9.8 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) ECF-ribofla_trS PF07155.7 gi|389845836|ref|YP_006348075.1| - 0.69 9.6 5.5 4.1 7.0 3.8 1.8 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component VIT1 PF01988.14 gi|389845836|ref|YP_006348075.1| - 0.9 8.9 5.4 1.1 8.7 3.7 1.1 1 0 0 1 1 1 0 VIT family Herpes_pp38 PF04846.8 gi|389845836|ref|YP_006348075.1| - 1.1 8.6 4.6 2.9 7.2 3.2 1.7 1 1 0 1 1 1 0 Herpesvirus pp38 phosphoprotein Tim17 PF02466.14 gi|389845836|ref|YP_006348075.1| - 4.4 7.3 6.1 7.3 6.6 1.9 1.9 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family Bacteriocin_IIc PF10439.4 gi|389845836|ref|YP_006348075.1| - 8 6.6 7.5 5.8 7.1 4.0 1.7 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide RNB PF00773.14 gi|389845837|ref|YP_006348076.1| - 1.9e-79 267.2 0.2 3.4e-77 259.9 0.1 2.2 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.7 gi|389845837|ref|YP_006348076.1| - 0.0051 16.5 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF982) KTI12 PF08433.5 gi|662859311|ref|YP_006348078.2| - 0.051 12.7 0.1 0.054 12.7 0.1 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 YqaJ PF09588.5 gi|662859311|ref|YP_006348078.2| - 0.061 13.2 0.0 0.064 13.2 0.0 1.1 1 0 0 1 1 1 0 YqaJ-like viral recombinase domain ChaB PF06150.7 gi|662859311|ref|YP_006348078.2| - 0.1 12.3 0.6 12 5.7 0.0 2.2 2 0 0 2 2 2 0 ChaB TraD PF06412.6 gi|662859311|ref|YP_006348078.2| - 0.14 11.7 0.6 11 5.7 0.0 2.5 2 1 0 2 2 2 0 Conjugal transfer protein TraD GATA PF00320.22 gi|662859311|ref|YP_006348078.2| - 0.68 9.3 6.7 2.3 7.6 0.3 2.4 2 0 0 2 2 2 0 GATA zinc finger PUA PF01472.15 gi|389845840|ref|YP_006348079.1| - 2.5e-17 62.3 2.7 4e-17 61.6 1.9 1.3 1 0 0 1 1 1 1 PUA domain DUF1028 PF06267.7 gi|662859312|ref|YP_006348080.2| - 2.7e-46 157.4 0.3 1.2e-24 86.8 0.0 2.0 1 1 1 2 2 2 2 Family of unknown function (DUF1028) DUF552 PF04472.7 gi|389845842|ref|YP_006348081.1| - 2.1e-17 62.8 1.8 2.6e-17 62.4 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) ACCA PF03255.9 gi|389845842|ref|YP_006348081.1| - 0.77 9.3 4.0 4.4 6.8 0.2 2.0 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABC_tran PF00005.22 gi|389845843|ref|YP_006348082.1| - 4.2e-20 72.4 0.0 4.1e-11 43.3 0.0 4.0 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|389845843|ref|YP_006348082.1| - 2.9e-12 46.2 0.0 0.0029 16.8 0.0 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389845843|ref|YP_006348082.1| - 4.8e-09 35.6 0.1 0.001 18.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389845843|ref|YP_006348082.1| - 1.1e-07 31.4 0.0 0.049 13.0 0.0 3.9 4 0 0 4 4 4 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|389845843|ref|YP_006348082.1| - 2.7e-07 30.5 4.1 0.0015 18.5 0.5 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_21 PF13304.1 gi|389845843|ref|YP_006348082.1| - 4.6e-07 30.0 4.4 0.31 10.9 0.0 4.4 4 0 0 4 4 4 2 AAA domain AAA_10 PF12846.2 gi|389845843|ref|YP_006348082.1| - 2.5e-06 27.1 2.0 0.0022 17.4 0.0 3.0 2 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|389845843|ref|YP_006348082.1| - 2.9e-06 27.4 0.6 0.092 12.8 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|389845843|ref|YP_006348082.1| - 3.7e-06 27.0 0.1 0.026 14.5 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|389845843|ref|YP_006348082.1| - 5.5e-05 23.9 4.7 0.2 12.4 0.0 4.7 5 0 0 5 5 4 1 AAA domain KaiC PF06745.8 gi|389845843|ref|YP_006348082.1| - 0.00015 21.0 0.0 0.045 12.8 0.0 2.5 2 0 0 2 2 2 1 KaiC DUF258 PF03193.11 gi|389845843|ref|YP_006348082.1| - 0.00021 20.4 0.0 0.61 9.2 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|389845843|ref|YP_006348082.1| - 0.00024 21.3 0.1 0.25 11.6 0.0 3.3 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|389845843|ref|YP_006348082.1| - 0.00039 20.2 0.0 0.59 9.9 0.0 3.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|389845843|ref|YP_006348082.1| - 0.0005 19.9 0.0 0.41 10.5 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|389845843|ref|YP_006348082.1| - 0.0013 19.0 0.7 0.68 10.2 0.3 2.6 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|389845843|ref|YP_006348082.1| - 0.0023 17.0 0.0 0.68 8.9 0.0 2.8 4 0 0 4 4 4 1 AAA ATPase domain APS_kinase PF01583.15 gi|389845843|ref|YP_006348082.1| - 0.0035 17.0 0.1 4.8 6.8 0.0 2.9 2 0 0 2 2 2 0 Adenylylsulphate kinase RNA_helicase PF00910.17 gi|389845843|ref|YP_006348082.1| - 0.0048 17.0 0.0 0.13 12.4 0.0 2.4 2 0 0 2 2 2 1 RNA helicase Viral_helicase1 PF01443.13 gi|389845843|ref|YP_006348082.1| - 0.0066 15.9 0.0 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|389845843|ref|YP_006348082.1| - 0.01 15.5 0.0 0.31 10.7 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.4 gi|389845843|ref|YP_006348082.1| - 0.011 14.7 0.1 2.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|389845843|ref|YP_006348082.1| - 0.013 15.2 0.0 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|389845843|ref|YP_006348082.1| - 0.014 14.8 0.2 0.65 9.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.4 gi|389845843|ref|YP_006348082.1| - 0.014 13.8 0.0 0.37 9.2 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein BCA_ABC_TP_C PF12399.3 gi|389845843|ref|YP_006348082.1| - 0.02 14.5 0.4 0.081 12.6 0.1 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter MMR_HSR1 PF01926.18 gi|389845843|ref|YP_006348082.1| - 0.026 14.4 0.2 1.7 8.6 0.0 3.3 4 0 0 4 4 3 0 50S ribosome-binding GTPase MobB PF03205.9 gi|389845843|ref|YP_006348082.1| - 0.034 13.8 0.1 0.87 9.2 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|389845843|ref|YP_006348082.1| - 0.056 13.2 0.1 14 5.5 0.0 3.2 2 0 0 2 2 2 0 Part of AAA domain PRK PF00485.13 gi|389845843|ref|YP_006348082.1| - 0.11 12.0 0.2 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Miro PF08477.8 gi|389845843|ref|YP_006348082.1| - 0.17 12.3 0.1 27 5.2 0.0 2.9 3 0 0 3 3 2 0 Miro-like protein DUF3987 PF13148.1 gi|389845843|ref|YP_006348082.1| - 0.22 10.0 0.0 29 3.0 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3987) NB-ARC PF00931.17 gi|389845843|ref|YP_006348082.1| - 0.29 9.9 0.0 1.9 7.2 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Zn-ribbon_8 PF09723.5 gi|389845843|ref|YP_006348082.1| - 0.49 10.3 7.4 13 5.8 0.1 3.4 3 0 0 3 3 3 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|389845843|ref|YP_006348082.1| - 0.65 10.0 3.8 3.1 7.8 0.1 2.9 3 0 0 3 3 3 0 zinc-finger DUF87 PF01935.12 gi|389845843|ref|YP_006348082.1| - 2.8 7.6 4.6 1.2 8.8 0.0 2.7 3 0 0 3 3 2 0 Domain of unknown function DUF87 PADR1 PF08063.7 gi|389845843|ref|YP_006348082.1| - 7.3 6.0 6.9 10 5.6 0.0 3.8 4 0 0 4 4 4 0 PADR1 (NUC008) domain CARDB PF07705.6 gi|389845844|ref|YP_006348083.1| - 8.2e-14 51.4 8.1 0.0051 16.8 0.0 5.7 5 1 0 5 5 5 3 CARDB DUF11 PF01345.13 gi|389845844|ref|YP_006348083.1| - 6.4e-07 29.3 31.7 0.0089 16.0 3.0 5.5 4 1 1 5 5 5 3 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|389845844|ref|YP_006348083.1| - 2.2e-06 27.5 27.2 0.0019 18.1 0.2 7.7 6 2 1 7 7 7 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|389845844|ref|YP_006348083.1| - 3.2e-05 23.9 0.6 5.4 7.1 0.0 5.2 5 1 1 6 6 6 1 Transglutaminase family, C-terminal ig like domain A2M_N PF01835.14 gi|389845844|ref|YP_006348083.1| - 0.0057 16.8 0.1 6.7 7.0 0.0 3.8 2 1 2 4 4 4 1 MG2 domain TRAP_beta PF05753.9 gi|389845844|ref|YP_006348083.1| - 0.04 13.0 2.5 8 5.5 0.0 3.3 2 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) MRP PF09387.5 gi|389845844|ref|YP_006348083.1| - 0.044 13.5 0.7 0.41 10.3 0.1 2.3 2 0 0 2 2 2 0 Mitochondrial RNA binding protein MRP ABC_tran PF00005.22 gi|389845845|ref|YP_006348084.1| - 2.2e-24 86.3 0.0 3.2e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389845845|ref|YP_006348084.1| - 7.7e-16 58.8 0.1 4.9e-10 39.8 0.0 2.5 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|389845845|ref|YP_006348084.1| - 0.00036 19.6 0.0 0.00087 18.4 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|389845845|ref|YP_006348084.1| - 0.0021 17.5 0.1 1.2 8.4 0.0 2.6 2 1 1 3 3 3 2 AAA-like domain AAA_23 PF13476.1 gi|389845845|ref|YP_006348084.1| - 0.0052 17.1 0.2 0.0085 16.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389845845|ref|YP_006348084.1| - 0.0094 15.9 0.0 0.016 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389845845|ref|YP_006348084.1| - 0.018 14.5 0.1 0.033 13.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|389845845|ref|YP_006348084.1| - 2.1 9.1 5.3 5.9 7.7 0.3 2.5 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|389845846|ref|YP_006348085.1| - 4.3e-15 55.3 10.6 9.1e-15 54.2 7.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389845846|ref|YP_006348085.1| - 1.6e-12 47.1 4.4 2.2e-12 46.6 3.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389845846|ref|YP_006348085.1| - 8.9e-10 38.1 6.4 8.9e-10 38.1 4.5 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389845846|ref|YP_006348085.1| - 0.0019 17.5 1.0 0.0019 17.5 0.7 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|389845846|ref|YP_006348085.1| - 0.0034 16.5 9.7 0.0068 15.5 6.7 1.6 1 1 0 1 1 1 1 ABC-2 type transporter BNR PF02012.15 gi|389845847|ref|YP_006348086.1| - 1.7e-09 36.0 26.8 0.17 11.8 0.1 6.2 6 0 0 6 6 6 5 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|389845847|ref|YP_006348086.1| - 9.9e-09 34.6 1.9 0.029 13.3 0.0 4.0 2 1 2 4 4 4 3 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.1 gi|389845847|ref|YP_006348086.1| - 0.00064 19.0 7.5 2.4 7.3 0.1 3.9 1 1 1 3 3 3 3 BNR repeat-like domain DUF4185 PF13810.1 gi|389845847|ref|YP_006348086.1| - 0.0033 16.3 5.0 5.6 5.7 0.2 4.5 3 2 2 5 5 5 3 Domain of unknown function (DUF4185) FAD_binding_3 PF01494.14 gi|662859313|ref|YP_006348087.2| - 2.8e-13 49.6 2.8 7.4e-10 38.4 0.6 3.0 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|662859313|ref|YP_006348087.2| - 2.8e-11 42.9 0.4 6.4e-05 22.0 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|662859313|ref|YP_006348087.2| - 3.3e-06 27.1 0.0 2.4e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|662859313|ref|YP_006348087.2| - 8.1e-06 25.1 0.2 1.1e-05 24.6 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|662859313|ref|YP_006348087.2| - 2e-05 23.7 0.2 0.025 13.5 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|662859313|ref|YP_006348087.2| - 0.0005 20.1 0.0 0.001 19.1 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|662859313|ref|YP_006348087.2| - 0.0015 17.4 0.8 0.0022 16.8 0.3 1.5 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|662859313|ref|YP_006348087.2| - 0.005 16.8 0.2 0.02 14.9 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|662859313|ref|YP_006348087.2| - 0.0061 15.0 0.0 0.01 14.3 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein SE PF08491.5 gi|662859313|ref|YP_006348087.2| - 0.041 12.7 0.0 1.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Squalene epoxidase UAE_UbL PF14732.1 gi|662859313|ref|YP_006348087.2| - 0.097 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain GCV_T PF01571.16 gi|389845849|ref|YP_006348088.1| - 1.8e-38 132.0 0.0 2.7e-38 131.4 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|389845849|ref|YP_006348088.1| - 8.5e-14 51.3 0.5 2.5e-13 49.8 0.1 2.0 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.2 gi|662859314|ref|YP_006348089.2| - 0.0042 16.8 0.1 0.0061 16.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|662859314|ref|YP_006348089.2| - 0.0082 15.5 0.1 0.012 14.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|662859314|ref|YP_006348089.2| - 0.021 14.5 0.0 0.027 14.1 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|662859314|ref|YP_006348089.2| - 0.071 13.5 0.0 0.091 13.1 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal Zn-ribbon_8 PF09723.5 gi|389845851|ref|YP_006348090.1| - 0.0015 18.4 3.9 0.18 11.8 0.7 2.5 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|389845851|ref|YP_006348090.1| - 0.0019 17.3 4.0 0.15 11.2 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain zf-RING_3 PF14369.1 gi|389845851|ref|YP_006348090.1| - 0.013 15.4 3.8 0.46 10.5 0.9 3.3 2 1 1 3 3 3 0 zinc-finger DZR PF12773.2 gi|389845851|ref|YP_006348090.1| - 0.076 12.8 4.8 1.4 8.7 1.6 2.6 2 1 0 2 2 2 0 Double zinc ribbon DUF1610 PF07754.6 gi|389845851|ref|YP_006348090.1| - 0.082 13.0 0.6 0.082 13.0 0.4 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) DUF2296 PF10058.4 gi|389845851|ref|YP_006348090.1| - 0.082 12.6 3.6 0.43 10.3 0.1 3.4 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CHY PF05495.7 gi|389845851|ref|YP_006348090.1| - 0.14 12.3 1.2 5.1 7.3 0.1 2.2 2 0 0 2 2 2 0 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|389845851|ref|YP_006348090.1| - 0.17 11.4 9.1 1.1 8.8 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|389845851|ref|YP_006348090.1| - 0.28 10.7 1.7 0.86 9.1 0.2 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-TFIIB PF13453.1 gi|389845851|ref|YP_006348090.1| - 0.38 10.0 5.3 1.8 7.8 1.7 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|389845851|ref|YP_006348090.1| - 0.39 10.4 3.7 38 4.0 0.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|389845851|ref|YP_006348090.1| - 0.39 10.0 8.7 5.2 6.4 3.4 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|389845851|ref|YP_006348090.1| - 0.47 10.5 4.0 18 5.4 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|389845851|ref|YP_006348090.1| - 0.56 9.8 3.4 36 4.0 0.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|389845851|ref|YP_006348090.1| - 2 7.9 5.1 19 4.8 0.1 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|389845851|ref|YP_006348090.1| - 3.7 7.2 5.6 47 3.7 1.8 2.9 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|389845851|ref|YP_006348090.1| - 5.5 6.8 7.9 1.1e+02 2.7 0.0 3.1 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|389845851|ref|YP_006348090.1| - 5.5 6.5 7.0 2.2 7.8 0.3 2.9 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger DUF2387 PF09526.5 gi|389845851|ref|YP_006348090.1| - 7.9 6.4 7.0 51 3.8 0.1 3.5 2 1 1 3 3 3 0 Probable metal-binding protein (DUF2387) Entericidin PF08085.6 gi|389845852|ref|YP_006348091.1| - 0.098 12.4 0.3 0.31 10.8 0.2 1.9 1 0 0 1 1 1 0 Entericidin EcnA/B family Usp PF00582.21 gi|389845853|ref|YP_006348092.1| - 1.1e-18 67.7 0.6 1.3e-18 67.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family ROK PF00480.15 gi|662859315|ref|YP_006348093.2| - 1.3e-31 109.7 0.2 1.9e-31 109.2 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|662859315|ref|YP_006348093.2| - 2.8e-06 26.8 0.3 3.7e-06 26.4 0.2 1.5 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|662859315|ref|YP_006348093.2| - 0.00097 18.5 0.1 0.0034 16.7 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain LVIVD PF08309.6 gi|389845855|ref|YP_006348094.1| - 1.5e-16 59.0 8.0 7.7e-05 21.5 0.0 6.7 7 0 0 7 7 7 4 LVIVD repeat Beta_propel PF09826.4 gi|389845855|ref|YP_006348094.1| - 0.00089 17.7 0.0 5 5.3 0.0 4.2 5 0 0 5 5 5 3 Beta propeller domain TAT_signal PF10518.4 gi|389845855|ref|YP_006348094.1| - 2.3 8.4 9.1 0.29 11.2 0.3 3.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NifU PF01106.12 gi|389845856|ref|YP_006348095.1| - 2e-09 37.0 0.3 2.8e-09 36.6 0.2 1.2 1 0 0 1 1 1 1 NifU-like domain HAD_2 PF13419.1 gi|389845857|ref|YP_006348096.1| - 2.5e-21 76.6 0.6 3.6e-21 76.1 0.4 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389845857|ref|YP_006348096.1| - 2e-08 34.9 0.0 8.2e-07 29.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389845857|ref|YP_006348096.1| - 0.00027 20.5 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|389845857|ref|YP_006348096.1| - 0.15 11.9 0.0 21 5.0 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF402 PF04167.8 gi|389845858|ref|YP_006348097.1| - 3e-21 75.0 0.2 6.4e-21 73.9 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|389845858|ref|YP_006348097.1| - 0.0049 16.9 0.2 0.017 15.2 0.1 1.9 1 1 0 1 1 1 1 S1 RNA binding domain PrsW-protease PF13367.1 gi|389845860|ref|YP_006348099.1| - 1.2e-42 145.2 15.0 2.4e-42 144.3 10.4 1.4 1 0 0 1 1 1 1 Protease prsW family DUF1600 PF07667.6 gi|389845860|ref|YP_006348099.1| - 0.34 11.0 3.1 0.38 10.8 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1600) ABC2_membrane_3 PF12698.2 gi|389845860|ref|YP_006348099.1| - 1 8.3 13.8 2 7.3 9.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein Lum_binding PF00677.12 gi|389845861|ref|YP_006348100.1| - 5.5e-35 119.1 0.0 5.6e-17 61.4 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain DUF502 PF04367.8 gi|662859316|ref|YP_006348101.2| - 6.3e-27 93.4 0.1 6.3e-27 93.4 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) CitMHS PF03600.11 gi|389845863|ref|YP_006348102.1| - 7.8e-35 120.0 0.0 2.6e-33 115.0 0.0 1.7 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|389845863|ref|YP_006348102.1| - 6.2e-23 80.1 5.4 5e-12 45.2 0.3 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|389845863|ref|YP_006348102.1| - 6.4e-15 54.9 35.9 1.3e-09 37.5 9.9 3.4 2 2 2 4 4 4 3 Sodium:sulfate symporter transmembrane region CDP-OH_P_tran_2 PF08009.6 gi|389845863|ref|YP_006348102.1| - 2.4 7.9 12.5 1.6 8.5 0.9 3.7 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 Peptidase_M24 PF00557.19 gi|389845865|ref|YP_006348104.1| - 4.1e-09 36.3 0.9 8.9e-09 35.2 0.0 1.8 2 0 0 2 2 2 1 Metallopeptidase family M24 UvrD-helicase PF00580.16 gi|389845866|ref|YP_006348105.1| - 8.7e-26 90.9 0.7 2.4e-24 86.2 0.1 2.6 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|389845866|ref|YP_006348105.1| - 7.7e-14 51.9 0.0 2.1e-09 37.3 0.0 2.5 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|389845866|ref|YP_006348105.1| - 3.9e-10 39.3 0.1 1e-09 38.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|389845866|ref|YP_006348105.1| - 5e-07 29.8 1.5 6.9e-06 26.1 0.3 2.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|389845866|ref|YP_006348105.1| - 7.7e-05 22.3 0.1 3.6 7.0 0.0 4.1 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|389845866|ref|YP_006348105.1| - 0.00077 19.1 0.1 0.0081 15.7 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|389845866|ref|YP_006348105.1| - 0.0019 17.8 0.3 0.084 12.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain Herpes_ori_bp PF02399.10 gi|389845866|ref|YP_006348105.1| - 0.002 16.1 0.0 0.0031 15.5 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_22 PF13401.1 gi|389845866|ref|YP_006348105.1| - 0.0039 17.3 0.0 1.9 8.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|389845866|ref|YP_006348105.1| - 0.0094 15.4 0.0 1.5 8.3 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|389845866|ref|YP_006348105.1| - 0.022 14.1 1.4 0.18 11.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_12 PF13087.1 gi|389845866|ref|YP_006348105.1| - 0.025 13.9 0.1 0.076 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|389845866|ref|YP_006348105.1| - 0.047 13.1 0.1 0.59 9.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain zinc_ribbon_2 PF13240.1 gi|662859317|ref|YP_006348106.2| - 0.0003 20.1 1.1 0.0003 20.1 0.8 1.6 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|662859317|ref|YP_006348106.2| - 0.00061 18.9 1.9 0.00098 18.2 1.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|662859317|ref|YP_006348106.2| - 0.0012 18.5 0.4 0.0014 18.3 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon Rubredoxin PF00301.15 gi|662859317|ref|YP_006348106.2| - 0.0056 16.5 0.7 1.1 9.2 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin A2L_zn_ribbon PF08792.5 gi|662859317|ref|YP_006348106.2| - 0.01 15.2 0.5 0.37 10.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|662859317|ref|YP_006348106.2| - 0.1 12.2 1.4 3.1 7.5 0.0 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|662859317|ref|YP_006348106.2| - 0.11 11.8 3.7 0.94 8.8 0.1 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|662859317|ref|YP_006348106.2| - 0.21 11.1 0.3 0.21 11.1 0.2 2.5 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|662859317|ref|YP_006348106.2| - 0.25 11.0 3.3 0.78 9.4 2.3 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Cys_rich_CPCC PF14206.1 gi|662859317|ref|YP_006348106.2| - 0.28 10.7 1.6 0.43 10.1 1.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC zinc_ribbon_4 PF13717.1 gi|662859317|ref|YP_006348106.2| - 0.46 10.2 2.9 3.6 7.3 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|662859317|ref|YP_006348106.2| - 0.58 9.7 3.3 3.2 7.4 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|662859317|ref|YP_006348106.2| - 0.8 9.8 3.8 2.1 8.5 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|662859317|ref|YP_006348106.2| - 1.9 8.3 4.3 2.1 8.2 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.2 gi|662859317|ref|YP_006348106.2| - 2.5 8.1 6.2 5.7 7.0 3.5 2.1 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Peptidase_M32 PF02074.10 gi|389845868|ref|YP_006348107.1| - 1.2e-162 542.0 4.7 1.4e-162 541.8 3.3 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase TPR_MLP1_2 PF07926.7 gi|389845868|ref|YP_006348107.1| - 0.38 10.4 2.7 0.41 10.3 0.2 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Osmo_CC PF08946.5 gi|389845868|ref|YP_006348107.1| - 2.6 8.1 7.0 13 5.9 0.3 2.8 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Peptidase_M20 PF01546.23 gi|389845869|ref|YP_006348108.1| - 5.3e-29 101.0 1.9 6.5e-29 100.7 1.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|389845869|ref|YP_006348108.1| - 2.1e-13 49.9 0.0 4.2e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain IRF-2BP1_2 PF11261.3 gi|389845869|ref|YP_006348108.1| - 0.037 13.4 0.1 3.1 7.3 0.0 2.6 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger DUF2478 PF10649.4 gi|389845869|ref|YP_006348108.1| - 0.087 12.1 0.2 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) MCPsignal PF00015.16 gi|389845870|ref|YP_006348109.1| - 5.9e-47 159.9 51.3 1.1e-44 152.5 20.5 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|389845870|ref|YP_006348109.1| - 2.3e-07 30.9 0.0 2.3e-07 30.9 0.0 6.1 5 2 0 5 5 4 1 HAMP domain DUF948 PF06103.6 gi|389845870|ref|YP_006348109.1| - 0.00015 21.5 23.9 0.082 12.7 1.6 4.7 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|389845870|ref|YP_006348109.1| - 0.0004 20.4 18.4 0.091 12.9 0.8 5.0 2 2 4 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Muted PF14942.1 gi|389845870|ref|YP_006348109.1| - 0.0018 18.1 2.6 0.0018 18.1 1.8 3.0 2 1 1 3 3 3 1 Organelle biogenesis, Muted-like protein Mating_N PF12731.2 gi|389845870|ref|YP_006348109.1| - 0.0059 16.4 13.0 0.2 11.5 0.8 4.1 4 1 0 4 4 3 2 Mating-type protein beta 1 ADIP PF11559.3 gi|389845870|ref|YP_006348109.1| - 0.029 14.2 0.6 0.029 14.2 0.4 3.1 2 2 2 4 4 4 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|389845870|ref|YP_006348109.1| - 0.031 12.9 12.7 0.046 12.3 1.2 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein AAA_13 PF13166.1 gi|389845870|ref|YP_006348109.1| - 0.039 12.4 17.9 0.093 11.1 3.0 2.2 1 1 0 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|389845870|ref|YP_006348109.1| - 0.041 13.6 19.3 0.33 10.7 0.3 5.1 3 2 6 9 9 9 0 Protein of unknown function (DUF1664) DUF489 PF04356.7 gi|389845870|ref|YP_006348109.1| - 0.041 13.4 7.7 0.18 11.3 1.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF489) V_ATPase_I PF01496.14 gi|389845870|ref|YP_006348109.1| - 0.043 11.6 10.2 0.1 10.4 7.0 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family MutS_III PF05192.13 gi|389845870|ref|YP_006348109.1| - 0.052 13.3 8.7 1.3 8.8 4.5 3.0 1 1 1 2 2 2 0 MutS domain III NPV_P10 PF05531.7 gi|389845870|ref|YP_006348109.1| - 0.11 12.7 24.9 2.5 8.4 0.7 6.1 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|389845870|ref|YP_006348109.1| - 0.11 11.5 29.7 0.58 9.2 7.6 3.4 1 1 3 4 4 4 0 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|389845870|ref|YP_006348109.1| - 0.15 11.8 17.0 0.8 9.4 4.6 2.6 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Syntaxin-6_N PF09177.6 gi|389845870|ref|YP_006348109.1| - 0.18 12.2 20.9 0.034 14.5 1.5 4.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal RmuC PF02646.11 gi|389845870|ref|YP_006348109.1| - 0.19 10.5 12.8 2.6 6.7 0.5 4.7 2 2 4 6 6 6 0 RmuC family IFT57 PF10498.4 gi|389845870|ref|YP_006348109.1| - 0.22 10.2 12.2 0.36 9.5 0.6 2.7 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 DUF1741 PF08427.5 gi|389845870|ref|YP_006348109.1| - 0.31 10.4 4.3 1.9 7.8 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1741) AIP3 PF03915.8 gi|389845870|ref|YP_006348109.1| - 0.33 9.8 16.4 0.85 8.4 4.0 2.2 2 0 0 2 2 2 0 Actin interacting protein 3 Allexi_40kDa PF05549.6 gi|389845870|ref|YP_006348109.1| - 0.42 9.8 12.2 0.11 11.7 0.8 2.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein Prominin PF05478.6 gi|389845870|ref|YP_006348109.1| - 0.6 7.5 13.9 0.18 9.2 5.9 2.1 1 1 1 2 2 2 0 Prominin Seryl_tRNA_N PF02403.17 gi|389845870|ref|YP_006348109.1| - 0.83 9.7 17.7 0.24 11.4 0.7 4.3 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|389845870|ref|YP_006348109.1| - 1.1 8.2 12.7 0.86 8.5 1.6 2.3 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4559 PF15112.1 gi|389845870|ref|YP_006348109.1| - 1.2 8.2 12.2 0.22 10.6 1.3 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) Laminin_II PF06009.7 gi|389845870|ref|YP_006348109.1| - 2 8.1 31.7 1.9 8.2 1.2 5.0 2 2 3 5 5 5 0 Laminin Domain II Mnd1 PF03962.10 gi|389845870|ref|YP_006348109.1| - 3.4 7.2 19.8 2.1 7.9 0.6 3.6 1 1 1 3 3 3 0 Mnd1 family Filament PF00038.16 gi|389845870|ref|YP_006348109.1| - 3.6 6.9 19.0 2.2 7.6 3.7 2.6 3 0 0 3 3 2 0 Intermediate filament protein IncA PF04156.9 gi|389845870|ref|YP_006348109.1| - 4.4 6.8 19.5 0.2 11.2 0.7 3.9 3 1 0 3 3 2 0 IncA protein ArdA PF07275.6 gi|389845870|ref|YP_006348109.1| - 6.9 6.8 24.4 6.7 6.9 0.3 4.5 1 1 3 4 4 4 0 Antirestriction protein (ArdA) T2SE PF00437.15 gi|662859318|ref|YP_006348110.2| - 2.3e-14 52.9 0.0 3.9e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|662859318|ref|YP_006348110.2| - 7.1e-07 28.7 0.1 2.4e-06 27.0 0.0 1.9 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|662859318|ref|YP_006348110.2| - 3.7e-05 24.5 0.0 0.00021 22.0 0.0 2.3 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|662859318|ref|YP_006348110.2| - 0.00023 20.6 0.0 0.001 18.4 0.0 2.0 2 1 1 3 3 2 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|662859318|ref|YP_006348110.2| - 0.0011 18.1 0.0 0.0021 17.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|662859318|ref|YP_006348110.2| - 0.0013 18.7 0.0 0.0055 16.7 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|662859318|ref|YP_006348110.2| - 0.0014 18.2 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|662859318|ref|YP_006348110.2| - 0.0019 17.9 0.0 0.0049 16.5 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|662859318|ref|YP_006348110.2| - 0.0022 17.6 0.0 0.0052 16.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|662859318|ref|YP_006348110.2| - 0.0026 17.2 0.0 0.0086 15.5 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain KH_2 PF07650.12 gi|662859318|ref|YP_006348110.2| - 0.0027 17.2 1.6 0.0065 16.0 1.1 1.6 1 0 0 1 1 1 1 KH domain AAA_33 PF13671.1 gi|662859318|ref|YP_006348110.2| - 0.0035 17.2 0.0 0.016 15.0 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|662859318|ref|YP_006348110.2| - 0.0056 16.8 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|662859318|ref|YP_006348110.2| - 0.0061 16.8 0.4 0.02 15.2 0.0 2.1 2 0 0 2 2 1 1 AAA domain KH_3 PF13014.1 gi|662859318|ref|YP_006348110.2| - 0.01 15.5 0.2 0.01 15.5 0.1 2.1 2 0 0 2 2 2 1 KH domain AAA_5 PF07728.9 gi|662859318|ref|YP_006348110.2| - 0.012 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|662859318|ref|YP_006348110.2| - 0.013 14.7 0.1 0.036 13.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PIN_4 PF13638.1 gi|662859318|ref|YP_006348110.2| - 0.015 15.3 0.0 0.16 12.0 0.0 2.4 1 1 0 1 1 1 0 PIN domain AAA PF00004.24 gi|662859318|ref|YP_006348110.2| - 0.021 15.0 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|662859318|ref|YP_006348110.2| - 0.028 13.5 0.0 0.083 11.9 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_14 PF13173.1 gi|662859318|ref|YP_006348110.2| - 0.036 13.9 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|662859318|ref|YP_006348110.2| - 0.038 13.5 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|662859318|ref|YP_006348110.2| - 0.046 13.7 0.0 0.11 12.5 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|662859318|ref|YP_006348110.2| - 0.048 13.0 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|662859318|ref|YP_006348110.2| - 0.061 12.8 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain KH_5 PF13184.1 gi|662859318|ref|YP_006348110.2| - 0.064 13.0 0.7 0.14 11.9 0.1 1.9 2 0 0 2 2 1 0 NusA-like KH domain DUF2620 PF10941.3 gi|662859318|ref|YP_006348110.2| - 0.065 13.2 0.2 0.24 11.4 0.0 2.0 2 0 0 2 2 1 0 Protein of unknown function DUF2620 AAA_7 PF12775.2 gi|662859318|ref|YP_006348110.2| - 0.089 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 NACHT PF05729.7 gi|662859318|ref|YP_006348110.2| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|662859318|ref|YP_006348110.2| - 0.12 12.6 0.0 0.36 11.1 0.0 1.8 2 0 0 2 2 1 0 ABC transporter DUF258 PF03193.11 gi|662859318|ref|YP_006348110.2| - 0.18 11.0 0.0 0.35 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|662859318|ref|YP_006348110.2| - 0.18 11.9 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TrmB PF01978.14 gi|389845872|ref|YP_006348111.1| - 0.0068 16.0 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|389845872|ref|YP_006348111.1| - 0.0091 16.2 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|389845872|ref|YP_006348111.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|389845872|ref|YP_006348111.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|389845872|ref|YP_006348111.1| - 0.015 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR_2 PF12802.2 gi|389845872|ref|YP_006348111.1| - 0.051 13.2 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|389845872|ref|YP_006348111.1| - 0.054 12.8 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PaaX PF07848.7 gi|389845872|ref|YP_006348111.1| - 0.075 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein DUF1634 PF07843.6 gi|389845873|ref|YP_006348112.1| - 0.00044 19.8 5.1 0.00071 19.1 3.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) MerE PF05052.7 gi|389845873|ref|YP_006348112.1| - 0.12 12.4 3.6 0.19 11.6 2.5 1.4 1 0 0 1 1 1 0 MerE protein ABC_tran PF00005.22 gi|389845874|ref|YP_006348113.1| - 1.9e-40 138.3 0.0 2.4e-21 76.4 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|389845874|ref|YP_006348113.1| - 7.1e-16 59.0 0.3 2.7e-07 30.8 0.0 4.2 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|389845874|ref|YP_006348113.1| - 5.8e-15 55.1 3.8 0.0002 20.6 0.0 4.4 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|389845874|ref|YP_006348113.1| - 3e-11 42.6 0.3 5.6e-11 41.8 0.2 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_23 PF13476.1 gi|389845874|ref|YP_006348113.1| - 8.7e-08 32.7 0.0 0.0069 16.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389845874|ref|YP_006348113.1| - 8.9e-08 31.7 0.6 0.099 12.0 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_17 PF13207.1 gi|389845874|ref|YP_006348113.1| - 1.4e-07 32.3 0.2 0.033 14.9 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|389845874|ref|YP_006348113.1| - 4.2e-07 30.1 0.6 0.017 15.1 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|389845874|ref|YP_006348113.1| - 4.2e-06 26.9 0.2 0.037 14.1 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|389845874|ref|YP_006348113.1| - 4.6e-06 26.0 0.2 0.043 13.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.24 gi|389845874|ref|YP_006348113.1| - 3.5e-05 24.0 0.0 0.043 14.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|389845874|ref|YP_006348113.1| - 0.00012 21.9 0.0 0.4 10.5 0.0 3.5 3 1 1 4 4 3 1 AAA domain RNA_helicase PF00910.17 gi|389845874|ref|YP_006348113.1| - 0.00018 21.6 0.0 0.45 10.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase SbcCD_C PF13558.1 gi|389845874|ref|YP_006348113.1| - 0.00036 20.3 0.0 0.24 11.3 0.0 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|389845874|ref|YP_006348113.1| - 0.00047 19.8 0.1 0.75 9.4 0.0 2.5 2 0 0 2 2 2 2 NACHT domain Fer4 PF00037.22 gi|389845874|ref|YP_006348113.1| - 0.00048 19.6 1.6 0.00048 19.6 1.1 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain DUF258 PF03193.11 gi|389845874|ref|YP_006348113.1| - 0.00064 18.9 0.0 0.49 9.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|389845874|ref|YP_006348113.1| - 0.0012 19.0 0.0 1.4 9.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|389845874|ref|YP_006348113.1| - 0.0037 16.9 0.5 2.7 7.7 0.1 3.2 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|389845874|ref|YP_006348113.1| - 0.004 16.6 0.3 2.2 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA-like domain Fer4_6 PF12837.2 gi|389845874|ref|YP_006348113.1| - 0.0042 16.9 1.9 0.0042 16.9 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_28 PF13521.1 gi|389845874|ref|YP_006348113.1| - 0.0058 16.5 0.4 0.92 9.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|389845874|ref|YP_006348113.1| - 0.0063 15.4 0.2 0.41 9.4 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_33 PF13671.1 gi|389845874|ref|YP_006348113.1| - 0.0066 16.3 0.7 5.5 6.8 0.7 3.1 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|389845874|ref|YP_006348113.1| - 0.0076 15.3 0.0 1.5 7.7 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain Fer4_7 PF12838.2 gi|389845874|ref|YP_006348113.1| - 0.013 15.8 9.9 0.03 14.7 6.9 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Miro PF08477.8 gi|389845874|ref|YP_006348113.1| - 0.02 15.3 0.0 7.8 7.0 0.0 2.8 2 1 0 2 2 2 0 Miro-like protein AAA_24 PF13479.1 gi|389845874|ref|YP_006348113.1| - 0.026 14.1 1.0 5.6 6.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|389845874|ref|YP_006348113.1| - 0.031 14.0 0.2 4.6 6.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|389845874|ref|YP_006348113.1| - 0.033 12.8 0.0 0.99 8.0 0.0 2.3 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|389845874|ref|YP_006348113.1| - 0.039 13.9 0.0 3.3 7.6 0.0 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|389845874|ref|YP_006348113.1| - 0.081 11.3 0.0 3.8 5.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|389845874|ref|YP_006348113.1| - 0.095 12.4 2.3 12 5.5 0.1 3.0 4 0 0 4 4 2 0 NTPase RuvB_N PF05496.7 gi|389845874|ref|YP_006348113.1| - 0.15 11.0 0.8 18 4.3 0.1 2.8 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus ArgK PF03308.11 gi|389845874|ref|YP_006348113.1| - 0.19 10.4 2.2 2.5 6.7 0.1 2.2 2 0 0 2 2 2 0 ArgK protein AAA_19 PF13245.1 gi|389845874|ref|YP_006348113.1| - 0.22 11.2 2.1 5.7 6.7 0.0 3.2 3 0 0 3 3 3 0 Part of AAA domain Fer4_10 PF13237.1 gi|389845874|ref|YP_006348113.1| - 0.35 10.7 11.3 0.65 9.8 7.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|389845874|ref|YP_006348113.1| - 0.38 10.6 8.0 0.7 9.7 5.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389845874|ref|YP_006348113.1| - 0.42 11.3 7.7 1.8 9.3 5.4 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|389845874|ref|YP_006348113.1| - 0.5 10.3 12.9 0.26 11.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389845874|ref|YP_006348113.1| - 0.57 10.4 10.6 1.1 9.5 7.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain IstB_IS21 PF01695.12 gi|389845874|ref|YP_006348113.1| - 0.58 9.5 2.4 10 5.4 0.1 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|389845874|ref|YP_006348113.1| - 1.6 8.1 4.3 2.7 7.3 0.1 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Fer4_3 PF12798.2 gi|389845874|ref|YP_006348113.1| - 3.6 8.3 12.7 0.12 13.0 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Glyoxalase PF00903.20 gi|389845875|ref|YP_006348114.1| - 2e-20 73.0 0.1 2.5e-09 37.2 0.2 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389845875|ref|YP_006348114.1| - 3.6e-17 62.9 0.4 1.2e-07 32.2 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|389845875|ref|YP_006348114.1| - 0.00021 21.2 0.2 0.014 15.3 0.1 2.6 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PBP PF01161.15 gi|662859319|ref|YP_006348115.2| - 2.1e-38 131.4 0.1 2.4e-38 131.2 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RTC PF01137.16 gi|389845877|ref|YP_006348116.1| - 3.2e-69 232.1 0.0 4e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|389845877|ref|YP_006348116.1| - 5.5e-15 55.2 0.5 1e-14 54.3 0.3 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF982 PF06169.7 gi|389845877|ref|YP_006348116.1| - 0.078 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF982) Usp PF00582.21 gi|389845878|ref|YP_006348117.1| - 3.8e-26 91.9 3.6 4.4e-26 91.7 2.5 1.1 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M54 PF07998.6 gi|662859320|ref|YP_006348118.2| - 2.2e-22 79.8 0.1 2.6e-22 79.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.1 gi|662859320|ref|YP_006348118.2| - 1.5e-05 24.5 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|662859320|ref|YP_006348118.2| - 1.9e-05 24.8 0.0 2.1e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|662859320|ref|YP_006348118.2| - 2.5e-05 24.0 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|662859320|ref|YP_006348118.2| - 0.00025 21.5 0.0 0.00032 21.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|662859320|ref|YP_006348118.2| - 0.0005 20.0 0.0 0.00055 19.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|662859320|ref|YP_006348118.2| - 0.0027 17.4 0.1 0.0047 16.6 0.1 1.3 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase Peptidase_M66 PF10462.4 gi|662859320|ref|YP_006348118.2| - 0.014 14.3 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.3 gi|662859320|ref|YP_006348118.2| - 0.023 13.1 0.2 0.032 12.7 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.8 gi|662859320|ref|YP_006348118.2| - 0.023 14.2 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin PF01421.14 gi|662859320|ref|YP_006348118.2| - 0.026 14.1 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M57 PF12388.3 gi|662859320|ref|YP_006348118.2| - 0.099 11.9 0.1 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase UPF0146 PF03686.8 gi|662859321|ref|YP_006348119.2| - 3.5e-23 81.8 0.0 4.3e-23 81.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|662859321|ref|YP_006348119.2| - 0.0014 18.3 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HAD_2 PF13419.1 gi|389845881|ref|YP_006348120.1| - 2.7e-11 44.0 1.1 1.3e-06 28.7 0.0 2.3 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389845881|ref|YP_006348120.1| - 1.6e-07 31.9 0.6 1.3e-06 28.9 0.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389845881|ref|YP_006348120.1| - 4.7e-06 26.2 0.5 3.6e-05 23.3 0.1 2.6 3 2 0 3 3 3 1 HAD-hyrolase-like Lactamase_B PF00753.22 gi|389845881|ref|YP_006348120.1| - 0.0074 15.9 0.4 0.013 15.1 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TatC PF00902.13 gi|389845882|ref|YP_006348121.1| - 0.023 14.1 1.3 0.028 13.8 0.9 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) UNC-50 PF05216.8 gi|389845882|ref|YP_006348121.1| - 0.33 10.1 1.4 2.6 7.2 0.9 1.9 1 1 0 1 1 1 0 UNC-50 family F420_oxidored PF03807.12 gi|389845883|ref|YP_006348122.1| - 1e-21 77.1 0.0 1.5e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|389845883|ref|YP_006348122.1| - 5.2e-06 26.2 0.0 7.2e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|389845883|ref|YP_006348122.1| - 1.3e-05 24.4 0.0 1.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase PDH PF02153.12 gi|389845883|ref|YP_006348122.1| - 0.00037 19.4 0.0 0.00058 18.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_10 PF13460.1 gi|389845883|ref|YP_006348122.1| - 0.00055 20.0 0.2 0.00076 19.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|389845883|ref|YP_006348122.1| - 0.0055 16.1 0.0 0.0071 15.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|389845883|ref|YP_006348122.1| - 0.0061 17.0 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|389845883|ref|YP_006348122.1| - 0.016 15.5 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|389845883|ref|YP_006348122.1| - 0.025 14.2 0.1 0.074 12.7 0.0 1.9 2 0 0 2 2 2 0 KR domain adh_short PF00106.20 gi|389845883|ref|YP_006348122.1| - 0.036 13.9 2.5 0.076 12.9 0.1 2.3 2 1 0 2 2 2 0 short chain dehydrogenase DapB_N PF01113.15 gi|389845883|ref|YP_006348122.1| - 0.09 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PRA-PH PF01503.12 gi|389845884|ref|YP_006348123.1| - 7.1e-14 51.8 0.7 8.4e-14 51.6 0.5 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase SLS PF14611.1 gi|389845884|ref|YP_006348123.1| - 0.12 11.7 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator MazG PF03819.12 gi|389845884|ref|YP_006348123.1| - 0.93 9.4 3.3 0.66 9.9 1.3 1.5 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain SNO PF01174.14 gi|389845885|ref|YP_006348124.1| - 7e-53 179.0 0.0 8.1e-53 178.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|389845885|ref|YP_006348124.1| - 8e-10 38.5 0.0 2e-09 37.2 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|389845885|ref|YP_006348124.1| - 0.00099 18.6 0.0 0.0026 17.2 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|389845885|ref|YP_006348124.1| - 0.0049 16.6 0.0 0.0066 16.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|389845885|ref|YP_006348124.1| - 0.033 13.6 0.1 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Sec61_beta PF03911.11 gi|662859322|ref|YP_006348125.2| - 1.6e-07 31.0 0.0 2.1e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family Thioredoxin PF00085.15 gi|389845887|ref|YP_006348126.1| - 8.9e-24 83.1 0.0 1e-23 82.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|389845887|ref|YP_006348126.1| - 3.4e-09 36.6 0.0 2.2e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|389845887|ref|YP_006348126.1| - 1.1e-07 32.0 0.0 5.5e-07 29.7 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|389845887|ref|YP_006348126.1| - 5.3e-05 23.1 0.7 0.00011 22.1 0.1 1.7 2 1 0 2 2 2 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|389845887|ref|YP_006348126.1| - 0.00011 21.8 0.1 0.013 15.1 0.0 1.9 1 1 1 2 2 2 2 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|389845887|ref|YP_006348126.1| - 0.00021 20.8 0.0 0.00025 20.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|389845887|ref|YP_006348126.1| - 0.00047 19.7 0.1 0.07 12.6 0.0 2.0 1 1 1 2 2 2 2 Redoxin DSBA PF01323.15 gi|389845887|ref|YP_006348126.1| - 0.0011 18.5 0.3 0.025 14.1 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.1 gi|389845887|ref|YP_006348126.1| - 0.0058 16.4 0.0 0.0058 16.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|389845887|ref|YP_006348126.1| - 0.0064 16.4 0.0 0.0097 15.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin TraF PF13728.1 gi|389845887|ref|YP_006348126.1| - 0.028 13.8 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Phosducin PF02114.11 gi|389845887|ref|YP_006348126.1| - 0.032 12.9 0.0 0.032 12.9 0.0 1.0 1 0 0 1 1 1 0 Phosducin DUF836 PF05768.9 gi|389845887|ref|YP_006348126.1| - 0.043 14.0 0.1 0.05 13.8 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) HyaE PF07449.6 gi|389845887|ref|YP_006348126.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Ribosomal_L40e PF01020.12 gi|389845888|ref|YP_006348127.1| - 7.2e-06 25.4 9.4 8.6e-06 25.2 6.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|389845888|ref|YP_006348127.1| - 0.00016 21.4 2.0 0.00017 21.2 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389845888|ref|YP_006348127.1| - 0.0003 20.1 2.5 0.00039 19.7 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389845888|ref|YP_006348127.1| - 0.0035 16.4 2.0 0.0043 16.2 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-DHHC PF01529.15 gi|389845888|ref|YP_006348127.1| - 0.0056 16.0 3.4 0.0058 16.0 2.4 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DNA_RNApol_7kD PF03604.8 gi|389845888|ref|YP_006348127.1| - 0.0059 16.0 4.6 0.0095 15.3 3.2 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Toxin_5 PF05294.8 gi|389845888|ref|YP_006348127.1| - 0.1 12.7 2.3 0.16 12.2 1.6 1.3 1 0 0 1 1 1 0 Scorpion short toxin HIPIP PF01355.12 gi|389845888|ref|YP_006348127.1| - 0.13 12.4 1.6 0.14 12.2 1.1 1.3 1 0 0 1 1 1 0 High potential iron-sulfur protein UPF0547 PF10571.4 gi|389845888|ref|YP_006348127.1| - 0.34 10.6 2.8 0.85 9.3 1.9 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|389845888|ref|YP_006348127.1| - 0.59 9.8 5.9 0.27 10.9 0.8 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Trp_oprn_chp PF09534.5 gi|389845889|ref|YP_006348128.1| - 0.54 9.8 2.8 14 5.2 1.9 2.2 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) UPF0126 PF03458.8 gi|389845889|ref|YP_006348128.1| - 5.3 6.7 9.9 14 5.4 6.8 1.9 1 1 0 1 1 1 0 UPF0126 domain Lactamase_B PF00753.22 gi|389845890|ref|YP_006348129.1| - 2.1e-23 83.0 7.7 3.1e-23 82.4 5.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389845890|ref|YP_006348129.1| - 1.9e-06 27.5 1.0 2.8e-06 27.0 0.7 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|389845890|ref|YP_006348129.1| - 0.012 15.3 1.3 0.022 14.4 0.9 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF99 PF01949.11 gi|389845892|ref|YP_006348131.1| - 1.5e-47 161.0 0.0 1.9e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.14 gi|389845893|ref|YP_006348132.1| - 6.4e-33 113.3 0.0 7.8e-33 113.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.22 gi|389845895|ref|YP_006348134.1| - 1.5e-34 119.1 0.0 2.1e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389845895|ref|YP_006348134.1| - 4.6e-10 39.9 0.0 0.00058 19.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|389845895|ref|YP_006348134.1| - 3e-07 30.6 0.2 5.1e-07 29.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|389845895|ref|YP_006348134.1| - 8.3e-06 25.0 0.0 1.3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|389845895|ref|YP_006348134.1| - 5.3e-05 22.4 0.0 0.02 13.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|389845895|ref|YP_006348134.1| - 0.00014 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389845895|ref|YP_006348134.1| - 0.00069 18.9 0.0 0.023 13.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|389845895|ref|YP_006348134.1| - 0.0038 17.1 0.1 0.018 14.9 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|389845895|ref|YP_006348134.1| - 0.0047 17.0 0.1 0.01 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|389845895|ref|YP_006348134.1| - 0.0061 16.4 1.7 0.18 11.7 0.3 2.9 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|389845895|ref|YP_006348134.1| - 0.0068 16.2 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389845895|ref|YP_006348134.1| - 0.007 15.7 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|389845895|ref|YP_006348134.1| - 0.0076 15.3 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|389845895|ref|YP_006348134.1| - 0.012 15.2 0.4 0.038 13.5 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|389845895|ref|YP_006348134.1| - 0.014 16.1 0.0 0.041 14.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|389845895|ref|YP_006348134.1| - 0.015 15.6 0.1 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|389845895|ref|YP_006348134.1| - 0.026 14.8 0.0 0.076 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|389845895|ref|YP_006348134.1| - 0.026 14.4 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|389845895|ref|YP_006348134.1| - 0.037 13.7 0.0 0.098 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|389845895|ref|YP_006348134.1| - 0.059 12.8 0.2 0.13 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain UPF0079 PF02367.12 gi|389845895|ref|YP_006348134.1| - 0.061 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|389845895|ref|YP_006348134.1| - 0.066 12.3 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|389845895|ref|YP_006348134.1| - 0.076 11.4 0.0 5.2 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|389845895|ref|YP_006348134.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|389845895|ref|YP_006348134.1| - 0.13 11.9 0.1 0.36 10.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Miro PF08477.8 gi|389845895|ref|YP_006348134.1| - 0.15 12.5 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Phosphonate-bd PF12974.2 gi|389845896|ref|YP_006348135.1| - 8.1e-51 172.7 2.3 9.5e-51 172.5 1.6 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|389845896|ref|YP_006348135.1| - 1.4e-06 28.0 0.2 2.1e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|389845896|ref|YP_006348135.1| - 2.7e-05 23.5 0.0 5.8e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Choline_sulf_C PF12411.3 gi|389845896|ref|YP_006348135.1| - 0.03 14.1 0.1 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 Choline sulfatase enzyme C terminal SBP_bac_11 PF13531.1 gi|389845896|ref|YP_006348135.1| - 0.037 13.6 1.3 0.068 12.7 0.9 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389845896|ref|YP_006348135.1| - 0.038 13.9 0.2 0.038 13.9 0.1 2.3 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence GATase PF00117.23 gi|389845897|ref|YP_006348136.1| - 1.7e-34 118.9 0.0 2.2e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|389845897|ref|YP_006348136.1| - 1.8e-09 37.4 0.0 3.7e-09 36.3 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|389845897|ref|YP_006348136.1| - 4e-07 29.8 0.0 0.00057 19.5 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|389845897|ref|YP_006348136.1| - 2.4e-06 27.1 2.0 1.2e-05 24.9 0.4 2.2 2 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|389845897|ref|YP_006348136.1| - 7.3e-05 22.2 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family PDT PF00800.13 gi|389845898|ref|YP_006348137.1| - 1.1e-45 155.4 0.1 1.4e-45 155.1 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|389845898|ref|YP_006348137.1| - 5.7e-07 28.8 0.0 3.2e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 ACT domain TIP39 PF14980.1 gi|389845898|ref|YP_006348137.1| - 0.1 12.2 0.1 0.31 10.7 0.0 1.8 1 0 0 1 1 1 0 TIP39 peptide HSP20 PF00011.16 gi|389845899|ref|YP_006348138.1| - 1.9e-25 88.6 0.2 2.3e-25 88.4 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|389845899|ref|YP_006348138.1| - 0.023 14.3 1.9 0.043 13.4 1.4 1.7 1 1 0 1 1 1 0 GvpH HSP20 PF00011.16 gi|389845900|ref|YP_006348139.1| - 2.1e-22 78.9 0.6 3.3e-22 78.2 0.1 1.5 2 0 0 2 2 2 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|389845900|ref|YP_006348139.1| - 0.0018 17.8 0.0 0.002 17.6 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|389845900|ref|YP_006348139.1| - 0.013 16.0 0.0 0.024 15.1 0.0 1.4 1 1 0 1 1 1 0 CS domain DUF4097 PF13349.1 gi|389845900|ref|YP_006348139.1| - 0.033 13.7 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) tRNA-synt_1 PF00133.17 gi|389845901|ref|YP_006348140.1| - 2.9e-52 177.5 0.0 5.2e-51 173.3 0.0 2.4 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|389845901|ref|YP_006348140.1| - 2.1e-23 82.6 0.3 3.9e-10 38.9 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|389845901|ref|YP_006348140.1| - 4.3e-21 75.2 0.1 7.5e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|389845901|ref|YP_006348140.1| - 2.1e-08 33.6 0.0 4.1e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|389845901|ref|YP_006348140.1| - 2.5e-05 23.5 0.0 0.075 12.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|389845901|ref|YP_006348140.1| - 0.00017 20.4 0.0 0.0032 16.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) ExoD PF06055.7 gi|389845902|ref|YP_006348141.1| - 0.065 12.3 0.7 0.072 12.1 0.5 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD NapE PF06796.6 gi|389845902|ref|YP_006348141.1| - 0.15 11.3 0.7 0.21 10.8 0.5 1.3 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE OCD_Mu_crystall PF02423.10 gi|389845903|ref|YP_006348142.1| - 7e-97 323.9 0.1 8.1e-97 323.7 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Cpn60_TCP1 PF00118.19 gi|662859323|ref|YP_006348145.2| - 6.9e-155 516.3 8.2 7.8e-155 516.1 5.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_S49 PF01343.13 gi|662859323|ref|YP_006348145.2| - 2 8.1 6.8 8.4 6.1 0.1 3.5 4 0 0 4 4 4 0 Peptidase family S49 CBM_6 PF03422.10 gi|389845907|ref|YP_006348146.1| - 0.00018 21.6 0.0 0.00024 21.2 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) Ribonuc_L-PSP PF01042.16 gi|389845909|ref|YP_006348148.1| - 1.2e-39 134.7 0.1 1.4e-39 134.6 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|389845909|ref|YP_006348148.1| - 0.0073 16.2 0.1 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease HIG_1_N PF04588.8 gi|389845910|ref|YP_006348149.1| - 0.43 10.3 2.7 1.7 8.4 0.2 2.0 1 1 1 2 2 2 0 Hypoxia induced protein conserved region Cyto_ox_2 PF02322.10 gi|389845911|ref|YP_006348150.1| - 1.6e-66 224.7 32.8 2.7e-66 223.9 22.7 1.3 1 1 0 1 1 1 1 Cytochrome oxidase subunit II Bac_Ubq_Cox PF01654.12 gi|389845912|ref|YP_006348151.1| - 1e-138 462.4 20.8 1.2e-138 462.2 14.4 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase PALP PF00291.20 gi|389845913|ref|YP_006348152.1| - 3.7e-79 266.1 5.8 4.9e-79 265.7 4.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|389845913|ref|YP_006348152.1| - 4.2e-07 30.2 0.7 6.6e-06 26.3 0.1 2.7 3 0 0 3 3 3 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|389845913|ref|YP_006348152.1| - 0.006 15.6 0.3 0.036 13.0 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family ACT_6 PF13740.1 gi|389845913|ref|YP_006348152.1| - 0.0069 16.0 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|389845913|ref|YP_006348152.1| - 0.023 14.2 0.0 0.084 12.3 0.0 2.1 1 0 0 1 1 1 0 ACT domain Hydrolase_6 PF13344.1 gi|389845913|ref|YP_006348152.1| - 0.037 13.9 0.1 0.26 11.1 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Citrate_synt PF00285.16 gi|389845915|ref|YP_006348154.1| - 1.8e-132 441.4 0.0 2e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase TrkA_C PF02080.16 gi|389845916|ref|YP_006348155.1| - 6.2e-28 96.1 0.8 4.4e-15 55.0 0.0 2.8 3 0 0 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|389845916|ref|YP_006348155.1| - 1.6e-14 54.0 7.3 5e-08 33.2 1.5 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|389845916|ref|YP_006348155.1| - 0.00058 19.0 1.8 0.54 9.3 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function DUF47 HALZ PF02183.13 gi|389845916|ref|YP_006348155.1| - 0.01 15.5 0.2 2 8.2 0.0 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|389845916|ref|YP_006348155.1| - 0.061 12.8 0.8 12 5.4 0.0 2.4 2 0 0 2 2 2 0 Septum formation initiator DivIVA PF05103.8 gi|389845916|ref|YP_006348155.1| - 0.13 12.2 0.5 24 4.9 0.0 2.7 3 0 0 3 3 3 0 DivIVA protein Ribosomal_L34 PF00468.12 gi|389845916|ref|YP_006348155.1| - 1.8 8.3 4.6 1.1 8.9 1.6 1.8 2 0 0 2 2 2 0 Ribosomal protein L34 Sulfate_tra_GLY PF13792.1 gi|389845917|ref|YP_006348156.1| - 0.0051 16.4 1.5 0.01 15.4 1.0 1.5 1 1 0 1 1 1 1 Sulfate transporter N-terminal domain with GLY motif Far-17a_AIG1 PF04750.9 gi|389845917|ref|YP_006348156.1| - 0.048 12.8 0.5 0.053 12.6 0.3 1.0 1 0 0 1 1 1 0 FAR-17a/AIG1-like protein FtsX PF02687.16 gi|389845917|ref|YP_006348156.1| - 0.83 9.4 6.0 1.5 8.6 4.2 1.4 1 1 0 1 1 1 0 FtsX-like permease family AstE_AspA PF04952.9 gi|662859324|ref|YP_006348157.2| - 5.7e-58 196.1 0.0 6.6e-58 195.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|389845919|ref|YP_006348158.1| - 6.4e-57 193.1 1.1 7.3e-57 192.9 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|389845919|ref|YP_006348158.1| - 0.076 12.6 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein OprD PF03573.8 gi|389845919|ref|YP_006348158.1| - 0.16 10.7 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 outer membrane porin, OprD family Spore_permease PF03845.8 gi|389845920|ref|YP_006348159.1| - 0.017 13.8 0.8 0.016 13.8 0.6 1.0 1 0 0 1 1 1 0 Spore germination protein PCMT PF01135.14 gi|389845921|ref|YP_006348160.1| - 2.4e-37 128.5 0.0 3e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|389845921|ref|YP_006348160.1| - 8.8e-11 42.3 0.0 1.4e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389845921|ref|YP_006348160.1| - 4e-08 32.9 0.0 5.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389845921|ref|YP_006348160.1| - 7.3e-08 31.9 0.0 1.3e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|389845921|ref|YP_006348160.1| - 5.4e-06 26.4 1.9 3.7e-05 23.7 0.5 2.4 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|389845921|ref|YP_006348160.1| - 5.7e-05 22.2 0.0 7.9e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|389845921|ref|YP_006348160.1| - 0.0011 19.3 0.0 0.0018 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389845921|ref|YP_006348160.1| - 0.0016 18.9 0.0 0.0025 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|389845921|ref|YP_006348160.1| - 0.0058 16.2 0.0 0.0079 15.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Fibrillarin PF01269.12 gi|389845921|ref|YP_006348160.1| - 0.0086 15.0 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_23 PF13489.1 gi|389845921|ref|YP_006348160.1| - 0.02 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|389845921|ref|YP_006348160.1| - 0.024 13.6 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|389845921|ref|YP_006348160.1| - 0.029 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|389845921|ref|YP_006348160.1| - 0.032 13.6 0.0 0.067 12.5 0.0 1.4 2 0 0 2 2 2 0 NOL1/NOP2/sun family UPF0020 PF01170.13 gi|389845921|ref|YP_006348160.1| - 0.053 13.0 0.0 0.39 10.2 0.0 1.9 1 1 0 2 2 2 0 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|389845921|ref|YP_006348160.1| - 0.083 11.9 0.1 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|389845921|ref|YP_006348160.1| - 0.12 12.7 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|662859325|ref|YP_006348161.2| - 1.1e-06 28.4 0.0 2.3e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|662859325|ref|YP_006348161.2| - 8.5e-05 23.1 0.0 0.00018 22.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|662859325|ref|YP_006348161.2| - 0.00022 20.5 0.1 0.0004 19.6 0.1 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|662859325|ref|YP_006348161.2| - 0.0079 16.2 1.3 0.0079 16.2 0.9 2.0 2 0 0 2 2 2 1 Methyltransferase domain TrmB PF01978.14 gi|662859325|ref|YP_006348161.2| - 0.027 14.1 0.0 0.081 12.6 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Glyco_transf_28 PF03033.15 gi|662859325|ref|YP_006348161.2| - 0.055 13.2 0.2 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Cons_hypoth95 PF03602.10 gi|662859325|ref|YP_006348161.2| - 0.083 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF2387 PF09526.5 gi|662859326|ref|YP_006348162.2| - 0.0074 16.1 0.8 0.018 14.9 0.6 1.6 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Qn_am_d_aIII PF09099.5 gi|662859326|ref|YP_006348162.2| - 0.012 15.9 0.2 0.038 14.2 0.0 1.8 1 1 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Zn_Tnp_IS1 PF03811.8 gi|662859326|ref|YP_006348162.2| - 0.016 14.6 3.5 0.043 13.3 1.6 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|662859326|ref|YP_006348162.2| - 0.036 14.3 0.6 0.09 13.0 0.4 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|662859326|ref|YP_006348162.2| - 0.46 10.1 5.0 2.2 7.9 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|662859326|ref|YP_006348162.2| - 1.2 8.8 5.8 7.8 6.2 4.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PQQ_2 PF13360.1 gi|389845924|ref|YP_006348163.1| - 6.8e-25 87.9 0.2 4.9e-13 49.0 0.0 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389845924|ref|YP_006348163.1| - 7.1e-12 44.2 1.0 0.0065 15.9 0.0 6.8 7 0 0 7 7 7 3 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389845924|ref|YP_006348163.1| - 9.9e-12 44.7 6.7 0.026 14.7 0.0 6.8 7 0 0 7 7 7 3 PQQ-like domain PQQ_2 PF13360.1 gi|389845925|ref|YP_006348164.1| - 2.9e-28 98.9 10.4 2.2e-17 63.3 0.8 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|389845925|ref|YP_006348164.1| - 3.8e-19 67.1 6.7 0.0025 17.2 0.1 7.4 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389845925|ref|YP_006348164.1| - 3.3e-16 58.9 31.3 0.002 18.3 0.1 9.2 8 3 1 9 9 9 6 PQQ-like domain Peptidase_M29 PF02073.10 gi|389845926|ref|YP_006348165.1| - 1.2e-18 67.0 1.0 2.1e-15 56.4 0.2 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Paramyxo_PNT PF13825.1 gi|389845926|ref|YP_006348165.1| - 0.0028 16.9 0.0 0.0043 16.3 0.0 1.3 1 0 0 1 1 1 1 Paramyxovirus structural protein V/P N-terminus Gp_dh_N PF00044.19 gi|662859327|ref|YP_006348166.2| - 8.3e-19 68.0 0.0 2.4e-18 66.5 0.0 1.8 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|662859327|ref|YP_006348166.2| - 8e-16 57.8 0.0 1.2e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|662859327|ref|YP_006348166.2| - 4.2e-11 42.8 0.0 9.1e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|662859327|ref|YP_006348166.2| - 5.8e-06 26.7 0.0 1.3e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|662859327|ref|YP_006348166.2| - 0.0005 19.2 0.1 0.021 14.0 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|662859327|ref|YP_006348166.2| - 0.00092 19.7 0.0 0.0034 17.8 0.0 1.9 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|662859327|ref|YP_006348166.2| - 0.0058 16.9 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Metallophos_2 PF12850.2 gi|389845928|ref|YP_006348167.1| - 1.3e-30 106.2 2.0 1.5e-30 106.1 1.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|389845928|ref|YP_006348167.1| - 4.2e-07 29.5 3.3 0.00027 20.4 2.3 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGK PF00162.14 gi|389845929|ref|YP_006348168.1| - 6e-111 370.6 0.1 6.9e-111 370.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|389845930|ref|YP_006348169.1| - 6.8e-58 194.5 0.0 9e-58 194.1 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|389845930|ref|YP_006348169.1| - 1.5e-52 177.5 0.0 2.2e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|389845930|ref|YP_006348169.1| - 0.00059 19.7 0.1 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|389845930|ref|YP_006348169.1| - 0.032 13.7 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Semialdhyde_dhC PF02774.13 gi|389845930|ref|YP_006348169.1| - 0.067 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain HSP20 PF00011.16 gi|389845931|ref|YP_006348170.1| - 5.1e-09 35.9 0.0 1.8e-07 30.9 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|389845931|ref|YP_006348170.1| - 1.6e-05 24.6 0.8 1.8e-05 24.4 0.5 1.2 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|389845931|ref|YP_006348170.1| - 0.085 12.2 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 RimK PF08443.6 gi|662859328|ref|YP_006348171.2| - 6.6e-27 94.2 0.0 8.7e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|662859328|ref|YP_006348171.2| - 2.4e-17 63.2 0.0 3.5e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|662859328|ref|YP_006348171.2| - 8.1e-10 38.1 0.0 1.2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|662859328|ref|YP_006348171.2| - 1.3e-06 27.3 0.0 2.4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|662859328|ref|YP_006348171.2| - 3.2e-06 27.0 0.0 5e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|662859328|ref|YP_006348171.2| - 7e-06 25.5 0.0 1.6e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|662859328|ref|YP_006348171.2| - 0.0044 16.4 0.0 0.0067 15.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|662859328|ref|YP_006348171.2| - 0.0053 16.0 0.0 0.0074 15.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Ins134_P3_kin PF05770.6 gi|662859328|ref|YP_006348171.2| - 0.048 12.6 0.0 0.079 11.9 0.0 1.3 1 0 0 1 1 1 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATPgrasp_ST PF14397.1 gi|662859328|ref|YP_006348171.2| - 0.062 12.3 0.0 0.24 10.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Ribosomal_L16 PF00252.13 gi|662859329|ref|YP_006348172.2| - 5.7e-31 107.0 0.0 6.6e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF91 PF01939.11 gi|662859330|ref|YP_006348173.2| - 5.4e-69 231.8 0.0 6.4e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 HTH_20 PF12840.2 gi|389845936|ref|YP_006348175.1| - 2e-09 37.0 0.3 3e-09 36.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389845936|ref|YP_006348175.1| - 0.0024 17.4 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.14 gi|389845936|ref|YP_006348175.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family MarR_2 PF12802.2 gi|389845936|ref|YP_006348175.1| - 0.03 13.9 0.2 0.047 13.3 0.1 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|389845936|ref|YP_006348175.1| - 0.037 13.7 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|389845936|ref|YP_006348175.1| - 0.04 13.5 0.3 0.081 12.5 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|389845936|ref|YP_006348175.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.5 gi|389845938|ref|YP_006348177.1| - 5e-09 35.9 1.3 5.9e-09 35.7 0.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|389845938|ref|YP_006348177.1| - 5.7e-05 22.3 1.5 0.047 13.0 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding HypA PF01155.14 gi|389845938|ref|YP_006348177.1| - 0.00037 20.1 0.6 0.00042 19.9 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|389845938|ref|YP_006348177.1| - 0.0011 18.0 1.2 0.32 10.2 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DUF2072 PF09845.4 gi|389845938|ref|YP_006348177.1| - 0.0019 18.1 0.4 0.002 18.0 0.3 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|389845938|ref|YP_006348177.1| - 0.015 15.1 1.5 0.032 14.0 1.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.7 gi|389845938|ref|YP_006348177.1| - 0.016 15.3 0.1 0.019 15.1 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-C2H2 PF00096.21 gi|389845938|ref|YP_006348177.1| - 0.018 15.3 1.3 0.63 10.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|389845938|ref|YP_006348177.1| - 0.018 14.5 1.2 0.068 12.7 0.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389845938|ref|YP_006348177.1| - 0.02 14.3 1.8 0.49 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|389845938|ref|YP_006348177.1| - 0.021 14.8 0.2 4.3 7.4 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|389845938|ref|YP_006348177.1| - 0.023 14.3 1.3 0.073 12.7 0.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|389845938|ref|YP_006348177.1| - 0.034 14.0 1.6 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNHCP PF12647.2 gi|389845938|ref|YP_006348177.1| - 0.036 13.8 0.2 0.04 13.7 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain DUF329 PF03884.9 gi|389845938|ref|YP_006348177.1| - 0.037 13.5 0.2 2.6 7.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-C3HC4_3 PF13920.1 gi|389845938|ref|YP_006348177.1| - 0.038 13.6 0.6 0.062 12.9 0.4 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.1 gi|389845938|ref|YP_006348177.1| - 0.048 13.1 0.1 0.058 12.9 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-Di19 PF05605.7 gi|389845938|ref|YP_006348177.1| - 0.051 13.7 1.4 2.9 8.0 1.0 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|389845938|ref|YP_006348177.1| - 0.057 13.7 0.7 9.5 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|389845938|ref|YP_006348177.1| - 0.087 13.1 2.2 1.9 8.9 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|389845938|ref|YP_006348177.1| - 0.092 12.7 1.5 4.3 7.4 0.2 2.1 2 0 0 2 2 2 0 zinc-finger Prok-RING_4 PF14447.1 gi|389845938|ref|YP_006348177.1| - 0.098 12.2 1.6 0.78 9.3 0.2 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Lar_restr_allev PF14354.1 gi|389845938|ref|YP_006348177.1| - 0.1 12.8 2.5 2.8 8.3 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|389845938|ref|YP_006348177.1| - 0.11 12.0 3.7 0.14 11.7 0.3 2.0 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-NADH-PPase PF09297.6 gi|389845938|ref|YP_006348177.1| - 0.11 12.0 2.2 8 6.0 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TerY-C PF15616.1 gi|389845938|ref|YP_006348177.1| - 0.13 12.2 2.9 4.8 7.1 0.2 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain OrfB_Zn_ribbon PF07282.6 gi|389845938|ref|YP_006348177.1| - 0.13 11.9 0.5 8.8 6.0 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Kp4 PF09044.5 gi|389845938|ref|YP_006348177.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Kp4 zf-RING_2 PF13639.1 gi|389845938|ref|YP_006348177.1| - 0.19 11.6 1.2 2.4 8.0 1.2 1.9 1 1 1 2 2 2 0 Ring finger domain TFIIS_C PF01096.13 gi|389845938|ref|YP_006348177.1| - 0.26 10.9 2.6 0.62 9.7 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|389845938|ref|YP_006348177.1| - 0.27 10.9 2.6 8.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-HYPF PF07503.7 gi|389845938|ref|YP_006348177.1| - 0.29 10.5 2.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|389845938|ref|YP_006348177.1| - 0.31 10.8 2.3 6 6.7 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-CSL PF05207.8 gi|389845938|ref|YP_006348177.1| - 0.32 10.5 3.5 0.55 9.7 2.4 1.5 1 1 0 1 1 1 0 CSL zinc finger Prok-RING_1 PF14446.1 gi|389845938|ref|YP_006348177.1| - 0.36 10.6 1.7 2.7 7.7 1.2 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 CpXC PF14353.1 gi|389845938|ref|YP_006348177.1| - 0.49 10.3 2.0 1.8 8.5 0.2 2.0 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|389845939|ref|YP_006348178.1| - 0.0059 15.8 0.3 0.025 13.9 0.0 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|389845939|ref|YP_006348178.1| - 0.011 15.3 0.2 0.016 14.8 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|389845939|ref|YP_006348178.1| - 0.024 14.7 1.6 3.1 7.9 1.1 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.5 gi|389845939|ref|YP_006348178.1| - 0.032 14.1 0.1 0.039 13.9 0.1 1.2 1 0 0 1 1 1 0 Zinc ribbon domain Gin PF10764.4 gi|389845939|ref|YP_006348178.1| - 0.039 13.6 0.8 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin PhnA_Zn_Ribbon PF08274.7 gi|389845939|ref|YP_006348178.1| - 0.083 12.6 1.3 0.27 11.0 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Pyridox_ox_2 PF12900.2 gi|662859331|ref|YP_006348179.2| - 2.9e-14 53.1 0.0 3.3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|662859331|ref|YP_006348179.2| - 1.4e-07 31.4 0.0 1.9e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HTH_10 PF04967.7 gi|662859332|ref|YP_006348180.2| - 5e-19 67.6 0.1 1.2e-18 66.4 0.1 1.6 2 0 0 2 2 2 1 HTH DNA binding domain HTH_20 PF12840.2 gi|662859332|ref|YP_006348180.2| - 0.0022 17.7 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|662859332|ref|YP_006348180.2| - 0.0023 17.2 0.0 0.0045 16.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|662859332|ref|YP_006348180.2| - 0.019 14.6 0.1 0.093 12.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|662859332|ref|YP_006348180.2| - 0.17 11.2 0.2 0.84 9.0 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|389845942|ref|YP_006348181.1| - 1.3e-09 37.7 0.1 2.1e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389845942|ref|YP_006348181.1| - 2.2e-05 23.9 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389845942|ref|YP_006348181.1| - 0.013 15.1 0.1 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|389845942|ref|YP_006348181.1| - 0.026 13.9 0.0 0.047 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389845942|ref|YP_006348181.1| - 0.034 13.8 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3877 PF12993.2 gi|389845943|ref|YP_006348182.1| - 0.028 13.9 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) Filamin PF00630.14 gi|389845943|ref|YP_006348182.1| - 0.088 13.3 0.1 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 Filamin/ABP280 repeat DUF2270 PF10028.4 gi|389845944|ref|YP_006348183.1| - 8.3e-66 220.9 3.3 9.6e-66 220.7 2.3 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF418 PF04235.7 gi|389845944|ref|YP_006348183.1| - 0.013 15.2 2.8 0.043 13.4 0.2 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF418) TauE PF01925.14 gi|389845944|ref|YP_006348183.1| - 0.029 13.8 3.7 1.1 8.7 1.1 2.1 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE Acyl_transf_3 PF01757.17 gi|389845944|ref|YP_006348183.1| - 0.15 10.8 6.8 0.16 10.7 1.1 2.4 2 1 0 2 2 2 0 Acyltransferase family DUF2975 PF11188.3 gi|389845944|ref|YP_006348183.1| - 0.5 10.0 5.7 0.76 9.4 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF368 PF04018.8 gi|389845944|ref|YP_006348183.1| - 1.2 8.3 5.2 5 6.2 2.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF368) CSD PF00313.17 gi|389845945|ref|YP_006348184.1| - 9.7e-21 73.3 0.1 1.1e-20 73.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|389845945|ref|YP_006348184.1| - 0.0014 18.2 0.2 0.0019 17.8 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|389845945|ref|YP_006348184.1| - 0.024 14.1 2.9 0.033 13.6 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|389845945|ref|YP_006348184.1| - 0.069 13.0 0.0 0.097 12.5 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF CSD PF00313.17 gi|389845946|ref|YP_006348185.1| - 4e-20 71.3 0.1 4.4e-20 71.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|389845946|ref|YP_006348185.1| - 0.006 16.2 0.2 0.008 15.8 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|389845946|ref|YP_006348185.1| - 0.025 14.0 2.9 0.033 13.6 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|389845946|ref|YP_006348185.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF Sulfatase PF00884.18 gi|389845947|ref|YP_006348186.1| - 7.8e-35 120.5 0.1 1.5e-34 119.5 0.1 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|389845947|ref|YP_006348186.1| - 2.1e-08 33.9 0.1 0.00049 19.5 0.0 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase CAF-1_p150 PF11600.3 gi|389845948|ref|YP_006348187.1| - 0.019 14.3 44.7 0.026 13.8 31.0 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal ATP-synt_A PF00119.15 gi|389845949|ref|YP_006348188.1| - 0.088 12.2 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 ATP synthase A chain Peptidase_S24 PF00717.18 gi|389845950|ref|YP_006348189.1| - 1.1e-06 28.1 0.2 1.9e-06 27.3 0.2 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S8 PF00082.17 gi|662859333|ref|YP_006348191.2| - 1.7e-47 161.8 14.8 1.7e-47 161.8 10.3 2.2 2 1 0 2 2 2 1 Subtilase family Tox-GHH PF15636.1 gi|662859333|ref|YP_006348191.2| - 0.0009 18.8 4.3 4.5 6.9 0.0 3.4 3 0 0 3 3 3 3 GHH signature containing HNH/Endo VII superfamily nuclease toxin Inhibitor_I9 PF05922.11 gi|662859333|ref|YP_006348191.2| - 0.0013 19.2 0.0 0.0056 17.2 0.0 2.1 1 0 0 1 1 1 1 Peptidase inhibitor I9 TAT_signal PF10518.4 gi|389845953|ref|YP_006348192.1| - 0.03 14.2 5.5 0.071 13.1 3.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence EF-hand_1 PF00036.27 gi|389845953|ref|YP_006348192.1| - 7.9 6.0 8.9 3.1 7.3 0.2 3.8 4 0 0 4 4 4 0 EF hand VanZ PF04892.7 gi|389845956|ref|YP_006348195.1| - 2.2e-13 50.3 2.1 3.1e-13 49.8 1.5 1.3 1 1 0 1 1 1 1 VanZ like family DUF192 PF02643.10 gi|389845957|ref|YP_006348196.1| - 4.1e-26 90.7 0.0 5.3e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 ABC_membrane PF00664.18 gi|389845960|ref|YP_006348199.1| - 2.8e-38 131.9 3.4 4e-38 131.4 2.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|389845960|ref|YP_006348199.1| - 1.2e-37 129.3 0.0 2e-37 128.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389845960|ref|YP_006348199.1| - 5.4e-05 23.2 0.0 0.00062 19.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389845960|ref|YP_006348199.1| - 7.2e-05 22.8 0.0 0.00016 21.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|389845960|ref|YP_006348199.1| - 0.00011 21.4 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|389845960|ref|YP_006348199.1| - 0.00017 22.3 0.1 0.00051 20.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain ABC_membrane_3 PF13748.1 gi|389845960|ref|YP_006348199.1| - 0.00074 18.6 1.5 0.23 10.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter transmembrane region SMC_N PF02463.14 gi|389845960|ref|YP_006348199.1| - 0.00074 18.8 0.5 0.02 14.1 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|389845960|ref|YP_006348199.1| - 0.00092 18.3 0.0 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|389845960|ref|YP_006348199.1| - 0.0015 18.7 0.3 0.011 15.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389845960|ref|YP_006348199.1| - 0.0015 17.9 0.1 0.0085 15.6 0.1 2.2 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|389845960|ref|YP_006348199.1| - 0.0066 16.0 0.2 0.035 13.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|389845960|ref|YP_006348199.1| - 0.0078 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|389845960|ref|YP_006348199.1| - 0.012 15.4 0.0 0.039 13.8 0.0 1.9 2 1 0 2 2 1 0 AAA domain DUF2107 PF09880.4 gi|389845960|ref|YP_006348199.1| - 0.018 14.9 0.4 0.05 13.5 0.3 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) AAA_23 PF13476.1 gi|389845960|ref|YP_006348199.1| - 0.024 14.9 0.1 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|389845960|ref|YP_006348199.1| - 0.025 13.1 0.3 0.025 13.1 0.2 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Guanylate_kin PF00625.16 gi|389845960|ref|YP_006348199.1| - 0.032 13.6 0.0 0.088 12.2 0.0 1.7 1 1 0 1 1 1 0 Guanylate kinase AAA PF00004.24 gi|389845960|ref|YP_006348199.1| - 0.049 13.8 0.0 0.25 11.5 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|389845960|ref|YP_006348199.1| - 0.058 12.8 0.6 0.19 11.1 0.4 1.9 1 1 0 1 1 1 0 AAA-like domain NTPase_1 PF03266.10 gi|389845960|ref|YP_006348199.1| - 0.078 12.6 0.1 5.5 6.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|389845960|ref|YP_006348199.1| - 0.079 12.3 0.1 0.26 10.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|389845960|ref|YP_006348199.1| - 0.081 12.5 0.0 0.42 10.2 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|389845960|ref|YP_006348199.1| - 0.09 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|389845960|ref|YP_006348199.1| - 0.12 12.1 0.1 0.72 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Creatininase PF02633.9 gi|389845961|ref|YP_006348200.1| - 3e-72 242.5 2.0 3.4e-72 242.3 1.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF3323 PF11796.3 gi|389845961|ref|YP_006348200.1| - 0.022 14.0 0.0 0.048 12.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) DUF883 PF05957.8 gi|389845962|ref|YP_006348201.1| - 0.00063 20.0 2.7 0.27 11.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF883) HeLo PF14479.1 gi|389845962|ref|YP_006348201.1| - 0.0046 16.7 0.3 0.0054 16.5 0.2 1.2 1 0 0 1 1 1 1 Prion-inhibition and propagation AATF-Che1 PF13339.1 gi|389845962|ref|YP_006348201.1| - 0.0059 16.7 2.4 0.013 15.6 0.8 2.0 1 1 1 2 2 2 1 Apoptosis antagonizing transcription factor CorA PF01544.13 gi|389845962|ref|YP_006348201.1| - 0.012 14.6 0.1 0.015 14.3 0.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2524 PF10732.4 gi|389845962|ref|YP_006348201.1| - 0.029 14.4 0.4 0.5 10.5 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2524) DUF770 PF05591.7 gi|389845962|ref|YP_006348201.1| - 0.039 13.5 0.6 0.049 13.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF770) ApoL PF05461.6 gi|389845962|ref|YP_006348201.1| - 0.24 10.6 2.3 0.18 11.0 0.1 1.8 1 1 0 2 2 2 0 Apolipoprotein L UPF0149 PF03695.8 gi|389845962|ref|YP_006348201.1| - 0.24 11.2 11.3 0.61 9.9 7.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0149) TPR_14 PF13428.1 gi|389845962|ref|YP_006348201.1| - 0.3 11.8 8.4 3.3 8.6 0.9 3.3 2 1 0 2 2 2 0 Tetratricopeptide repeat GTPase_Cys_C PF12631.2 gi|389845962|ref|YP_006348201.1| - 0.33 11.4 4.4 2.7 8.4 0.1 2.7 2 2 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Ribosomal_60s PF00428.14 gi|389845962|ref|YP_006348201.1| - 0.4 11.1 14.8 0.045 14.1 6.9 1.9 2 0 0 2 2 2 0 60s Acidic ribosomal protein Hpt PF01627.18 gi|389845962|ref|YP_006348201.1| - 1.9 8.5 8.8 2.1 8.4 1.4 2.7 1 1 1 2 2 2 0 Hpt domain NUDIX PF00293.23 gi|389845963|ref|YP_006348202.1| - 5.2e-15 55.2 0.2 6.6e-15 54.9 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF372 PF04036.7 gi|389845964|ref|YP_006348203.1| - 8.2e-23 79.5 0.1 1.3e-22 78.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|389845964|ref|YP_006348203.1| - 1.4e-19 69.9 0.6 1.8e-19 69.5 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|389845964|ref|YP_006348203.1| - 0.11 12.1 0.0 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Gene 25-like lysozyme Epimerase PF01370.16 gi|389845965|ref|YP_006348204.1| - 4e-22 78.7 0.0 5.6e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389845965|ref|YP_006348204.1| - 1.1e-18 67.0 0.0 1.4e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|389845965|ref|YP_006348204.1| - 2.1e-14 53.1 0.0 1.9e-11 43.4 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|389845965|ref|YP_006348204.1| - 4.6e-13 49.5 0.0 5.9e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|389845965|ref|YP_006348204.1| - 7.6e-13 47.9 0.7 1.1e-12 47.4 0.0 1.5 2 0 0 2 2 2 1 Male sterility protein NmrA PF05368.8 gi|389845965|ref|YP_006348204.1| - 7.6e-07 28.6 0.0 1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|389845965|ref|YP_006348204.1| - 1.2e-06 28.5 0.0 2.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|389845965|ref|YP_006348204.1| - 0.00064 18.6 0.1 0.0022 16.9 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.5 gi|389845965|ref|YP_006348204.1| - 0.0066 16.1 1.6 0.021 14.4 1.1 1.8 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|389845965|ref|YP_006348204.1| - 0.0095 14.9 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|389845965|ref|YP_006348204.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF309 PF03745.9 gi|389845967|ref|YP_006348206.1| - 8.4e-14 50.7 0.4 1.3e-13 50.1 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) FYVE_2 PF02318.11 gi|662859334|ref|YP_006348207.2| - 0.022 14.6 0.1 0.024 14.5 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Cytochrom_c3_2 PF14537.1 gi|662859334|ref|YP_006348207.2| - 0.036 14.4 0.1 0.042 14.1 0.1 1.3 1 0 0 1 1 1 0 Cytochrome c3 Cytochrome_CBB3 PF13442.1 gi|662859334|ref|YP_006348207.2| - 0.044 13.9 0.1 0.063 13.4 0.1 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.1 gi|662859334|ref|YP_006348207.2| - 0.051 13.2 0.2 0.051 13.2 0.1 1.5 1 1 0 1 1 1 0 Cytochrome c7 zf-dskA_traR PF01258.12 gi|662859334|ref|YP_006348207.2| - 4.4 7.1 7.3 7.7 6.3 0.0 2.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-TFIIB PF13453.1 gi|662859334|ref|YP_006348207.2| - 5.1 6.3 5.7 11 5.3 3.9 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger PQQ_3 PF13570.1 gi|389845969|ref|YP_006348208.1| - 1.7e-29 101.1 11.9 1.4e-05 25.1 0.1 7.7 7 1 0 7 7 7 7 PQQ-like domain PQQ_2 PF13360.1 gi|389845969|ref|YP_006348208.1| - 7.3e-28 97.6 3.6 2.6e-19 69.6 0.0 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389845969|ref|YP_006348208.1| - 2.8e-13 48.6 8.5 0.0021 17.5 0.0 5.8 7 0 0 7 7 7 3 PQQ enzyme repeat Myco_19_kDa PF05481.7 gi|389845970|ref|YP_006348209.1| - 0.13 12.0 1.9 0.95 9.2 0.1 2.1 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen DUF3558 PF12079.3 gi|389845970|ref|YP_006348209.1| - 0.14 11.7 4.7 0.15 11.6 2.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3558) tRNA_anti-codon PF01336.20 gi|389845971|ref|YP_006348210.1| - 7.5e-29 99.4 11.1 4.7e-13 48.8 0.2 4.0 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain SSB PF00436.20 gi|389845971|ref|YP_006348210.1| - 0.00044 20.0 0.1 0.43 10.4 0.0 3.1 3 0 0 3 3 3 2 Single-strand binding protein family Rep_fac-A_C PF08646.5 gi|389845971|ref|YP_006348210.1| - 0.0031 17.2 0.0 15 5.2 0.0 3.2 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF4539 PF15072.1 gi|389845971|ref|YP_006348210.1| - 0.041 13.5 0.2 2.5 7.8 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4539) CBFD_NFYB_HMF PF00808.18 gi|662859335|ref|YP_006348211.2| - 8.5e-26 89.8 0.3 8.7e-15 54.5 0.0 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|662859335|ref|YP_006348211.2| - 1.4e-15 57.1 0.3 1.5e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 TFIID_20kDa PF03847.8 gi|662859335|ref|YP_006348211.2| - 0.0026 17.9 0.1 0.0054 16.9 0.1 1.5 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|662859335|ref|YP_006348211.2| - 0.02 14.6 0.1 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit CENP-S PF15630.1 gi|662859335|ref|YP_006348211.2| - 0.029 14.5 0.2 0.029 14.5 0.2 1.9 2 1 0 2 2 2 0 Kinetochore component CENP-S DUF1931 PF09123.6 gi|662859335|ref|YP_006348211.2| - 0.031 14.2 0.5 0.84 9.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) TAF PF02969.12 gi|662859335|ref|YP_006348211.2| - 0.092 12.6 0.7 0.59 10.1 0.1 2.2 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Bromo_TP PF07524.8 gi|662859335|ref|YP_006348211.2| - 0.1 12.3 0.2 0.57 9.9 0.0 1.9 2 0 0 2 2 2 0 Bromodomain associated Hist_deacetyl PF00850.14 gi|389845973|ref|YP_006348212.1| - 4.3e-85 285.7 0.1 5.2e-85 285.4 0.1 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|389845974|ref|YP_006348213.1| - 1.1e-39 134.7 0.0 2.5e-39 133.6 0.0 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|389845974|ref|YP_006348213.1| - 2.7e-13 50.0 0.1 6.6e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain YndJ PF14158.1 gi|389845975|ref|YP_006348214.1| - 1.2e-53 181.9 24.4 1.8e-53 181.3 16.9 1.2 1 0 0 1 1 1 1 YndJ-like protein Keratin PF02422.11 gi|389845975|ref|YP_006348214.1| - 0.077 12.9 1.1 0.3 11.0 0.8 2.0 1 0 0 1 1 1 0 Keratin DUF4166 PF13761.1 gi|389845976|ref|YP_006348215.1| - 1e-26 93.7 0.0 1.1e-26 93.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) DoxX_3 PF13781.1 gi|389845977|ref|YP_006348216.1| - 1.8e-17 63.5 9.4 2.6e-17 63.0 6.5 1.2 1 0 0 1 1 1 1 DoxX-like family Polyketide_cyc2 PF10604.4 gi|389845977|ref|YP_006348216.1| - 0.0012 19.0 2.3 0.0022 18.1 1.6 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DsbD PF02683.10 gi|389845978|ref|YP_006348217.1| - 5e-18 65.4 12.8 5.9e-18 65.2 8.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF1405 PF07187.6 gi|389845978|ref|YP_006348217.1| - 0.13 12.0 3.7 0.071 12.8 1.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1405) MARVEL PF01284.18 gi|389845978|ref|YP_006348217.1| - 4.8 6.9 17.8 0.5 10.1 7.6 2.6 2 1 0 2 2 2 0 Membrane-associating domain Redoxin PF08534.5 gi|389845979|ref|YP_006348218.1| - 5e-14 52.0 0.0 6.6e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|389845979|ref|YP_006348218.1| - 7.1e-10 38.8 0.0 9.5e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|389845979|ref|YP_006348218.1| - 2.7e-06 27.0 0.0 3.5e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|389845979|ref|YP_006348218.1| - 8.3e-06 25.4 0.0 0.00064 19.3 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389845979|ref|YP_006348218.1| - 0.00062 19.9 0.0 0.0008 19.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain SCO1-SenC PF02630.9 gi|389845980|ref|YP_006348219.1| - 5.2e-06 26.1 0.0 1.2e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC Copper-bind PF00127.15 gi|389845981|ref|YP_006348220.1| - 0.00061 19.9 0.0 0.0012 19.0 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_3 PF07732.10 gi|389845982|ref|YP_006348221.1| - 1.4e-19 69.9 0.6 6.4e-19 67.8 0.0 2.2 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|389845982|ref|YP_006348221.1| - 7.5e-10 38.4 6.2 0.00027 20.4 0.7 3.2 3 0 0 3 3 3 2 Multicopper oxidase TAT_signal PF10518.4 gi|389845982|ref|YP_006348221.1| - 0.58 10.2 5.5 1 9.5 3.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.17 gi|389845983|ref|YP_006348222.1| - 1.5e-09 37.3 19.1 6.2e-09 35.3 5.1 2.8 1 1 1 2 2 2 2 ZIP Zinc transporter Copper-bind PF00127.15 gi|389845984|ref|YP_006348223.1| - 1.6e-17 63.5 0.0 2.5e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389845984|ref|YP_006348223.1| - 8e-05 22.4 0.0 0.0025 17.6 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|389845984|ref|YP_006348223.1| - 0.078 13.0 3.2 0.21 11.6 2.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.21 gi|389845985|ref|YP_006348224.1| - 5e-14 52.3 0.1 5.3e-09 35.9 0.0 2.4 1 1 1 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|389845985|ref|YP_006348224.1| - 5.2e-08 32.8 0.9 0.0027 17.4 0.1 2.2 1 1 1 2 2 2 2 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|389845985|ref|YP_006348224.1| - 7.5e-06 25.3 0.3 1.4e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|389845985|ref|YP_006348224.1| - 5.9e-05 22.4 0.1 0.013 14.8 0.0 2.3 1 1 1 2 2 2 2 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|389845985|ref|YP_006348224.1| - 9.8e-05 21.5 0.0 0.17 10.9 0.0 2.5 2 1 1 3 3 3 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|389845985|ref|YP_006348224.1| - 0.00012 21.9 3.7 0.005 16.6 0.2 2.7 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Aconitase PF00330.15 gi|389845986|ref|YP_006348225.1| - 3.7e-135 451.0 0.0 3.6e-94 315.8 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|389845986|ref|YP_006348225.1| - 3.3e-39 133.9 0.0 5.7e-39 133.2 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Pilus_CpaD PF09476.5 gi|389845987|ref|YP_006348226.1| - 0.093 12.1 0.0 1.5 8.2 0.0 2.0 1 1 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) RtcB PF01139.12 gi|389845988|ref|YP_006348227.1| - 2.2e-134 448.6 0.0 2.5e-134 448.4 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF836 PF05768.9 gi|389845990|ref|YP_006348229.1| - 3.1e-15 56.1 0.0 3.5e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|389845990|ref|YP_006348229.1| - 2.3e-08 33.8 0.3 5.5e-08 32.6 0.1 1.7 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|389845990|ref|YP_006348229.1| - 7e-07 28.9 0.0 7.4e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain DUF953 PF06110.6 gi|389845990|ref|YP_006348229.1| - 0.0068 15.8 0.0 0.0072 15.7 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Thioredoxin_2 PF13098.1 gi|389845990|ref|YP_006348229.1| - 0.019 15.1 0.0 0.026 14.7 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain DUF2225 PF09986.4 gi|389845990|ref|YP_006348229.1| - 0.036 13.5 0.0 0.043 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Redoxin PF08534.5 gi|389845990|ref|YP_006348229.1| - 0.066 12.7 0.0 0.075 12.5 0.0 1.1 1 0 0 1 1 1 0 Redoxin Thioredoxin_4 PF13462.1 gi|389845990|ref|YP_006348229.1| - 0.087 12.8 0.1 1.2 9.1 0.1 1.9 1 1 1 2 2 2 0 Thioredoxin Abhydrolase_3 PF07859.8 gi|389845990|ref|YP_006348229.1| - 0.12 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold Sugar_tr PF00083.19 gi|389845991|ref|YP_006348230.1| - 2.1e-128 428.7 24.6 2.4e-128 428.5 17.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|389845991|ref|YP_006348230.1| - 1.4e-43 149.0 76.6 5.8e-36 123.9 28.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|389845991|ref|YP_006348230.1| - 8.2e-08 30.9 2.1 8.2e-08 30.9 1.5 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.1 gi|389845991|ref|YP_006348230.1| - 0.00065 18.2 4.2 0.00065 18.2 2.9 4.0 3 1 1 4 4 4 3 MFS/sugar transport protein Rick_17kDa_Anti PF05433.10 gi|389845991|ref|YP_006348230.1| - 0.0018 17.8 5.3 0.008 15.8 3.7 2.2 1 0 0 1 1 1 1 Glycine zipper 2TM domain NikR_C PF08753.6 gi|389845992|ref|YP_006348231.1| - 1.6e-19 69.5 0.2 2.2e-19 69.1 0.1 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|389845992|ref|YP_006348231.1| - 1.6e-07 30.8 0.0 2.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HTH_20 PF12840.2 gi|389845993|ref|YP_006348232.1| - 0.1 12.4 0.2 0.45 10.3 0.1 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain 2-Hacid_dh_C PF02826.14 gi|389845994|ref|YP_006348233.1| - 5.4e-55 185.2 0.0 1.1e-54 184.3 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|389845994|ref|YP_006348233.1| - 5.4e-26 90.6 0.4 6e-26 90.4 0.3 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Na_H_antiporter PF03553.9 gi|389845996|ref|YP_006348235.1| - 2.2e-57 194.4 43.4 1.1e-50 172.4 15.5 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family PfkB PF00294.19 gi|389845997|ref|YP_006348236.1| - 3.3e-56 190.6 1.5 3.7e-56 190.4 1.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FAD_binding_2 PF00890.19 gi|389845998|ref|YP_006348237.1| - 0.073 11.9 0.1 0.081 11.7 0.1 1.0 1 0 0 1 1 1 0 FAD binding domain MutL_C PF08676.6 gi|389845999|ref|YP_006348238.1| - 9.2e-37 125.8 0.0 1.4e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|389845999|ref|YP_006348238.1| - 4.9e-36 122.7 0.0 7.5e-36 122.1 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|389845999|ref|YP_006348238.1| - 2e-11 43.7 0.0 5.1e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|389845999|ref|YP_006348238.1| - 1.8e-09 37.2 0.4 3e-08 33.3 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|389846000|ref|YP_006348239.1| - 6.9e-100 333.2 0.0 1.1e-99 332.6 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|389846000|ref|YP_006348239.1| - 7.5e-46 156.4 1.9 6.3e-44 150.2 1.9 2.3 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|389846000|ref|YP_006348239.1| - 4.1e-28 97.6 0.0 8e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|389846000|ref|YP_006348239.1| - 2.6e-23 82.0 0.7 5.4e-23 80.9 0.5 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|389846000|ref|YP_006348239.1| - 1.1e-21 77.2 0.0 3e-21 75.9 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|389846000|ref|YP_006348239.1| - 0.019 14.4 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Lactococcin PF04369.8 gi|389846000|ref|YP_006348239.1| - 0.039 13.8 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Lactococcin-like family HHH_2 PF12826.2 gi|389846000|ref|YP_006348239.1| - 0.058 13.2 0.3 8.1 6.4 0.0 3.6 3 1 1 4 4 4 0 Helix-hairpin-helix motif FbpA PF05833.6 gi|389846000|ref|YP_006348239.1| - 0.063 11.8 0.7 0.11 11.0 0.5 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) AAA_14 PF13173.1 gi|389846000|ref|YP_006348239.1| - 0.092 12.6 0.0 0.41 10.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain Herpes_UL6 PF01763.11 gi|389846000|ref|YP_006348239.1| - 0.14 10.3 0.2 0.2 9.7 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like AAA_23 PF13476.1 gi|389846000|ref|YP_006348239.1| - 0.21 11.9 0.2 2.7 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Peripla_BP_6 PF13458.1 gi|662859336|ref|YP_006348240.2| - 1.1e-36 126.9 9.7 1.4e-36 126.5 6.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|662859336|ref|YP_006348240.2| - 3.2e-29 101.7 0.0 4.3e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|662859336|ref|YP_006348240.2| - 4.7e-09 35.4 0.4 2.7e-08 32.9 0.0 2.2 3 0 0 3 3 3 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|662859336|ref|YP_006348240.2| - 0.077 13.0 0.9 0.077 13.0 0.6 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.16 gi|662859337|ref|YP_006348241.2| - 4e-54 183.3 60.9 5.1e-53 179.7 22.6 3.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|662859337|ref|YP_006348241.2| - 4.8e-10 39.4 6.2 1.9e-08 34.3 0.2 6.1 6 1 1 7 7 7 2 HAMP domain DUF3584 PF12128.3 gi|662859337|ref|YP_006348241.2| - 0.16 9.2 36.4 0.032 11.5 5.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) BLOC1_2 PF10046.4 gi|662859337|ref|YP_006348241.2| - 0.2 11.7 30.9 1.4 9.0 0.9 6.2 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2450 PF10475.4 gi|662859337|ref|YP_006348241.2| - 0.24 10.2 9.8 0.12 11.3 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Laminin_II PF06009.7 gi|662859337|ref|YP_006348241.2| - 0.3 10.8 36.9 0.1 12.3 5.0 4.8 2 2 2 4 4 4 0 Laminin Domain II NPV_P10 PF05531.7 gi|662859337|ref|YP_006348241.2| - 0.39 11.0 19.7 0.031 14.5 1.3 5.0 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Laminin_I PF06008.9 gi|662859337|ref|YP_006348241.2| - 3.4 6.9 40.5 0.44 9.8 9.3 4.4 1 1 1 3 3 3 0 Laminin Domain I V_ATPase_I PF01496.14 gi|662859337|ref|YP_006348241.2| - 3.6 5.3 23.3 0.29 8.9 4.2 2.6 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MCPsignal PF00015.16 gi|389846003|ref|YP_006348242.1| - 3.2e-40 137.9 57.7 1.9e-38 132.1 25.8 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|389846003|ref|YP_006348242.1| - 6.3e-12 45.7 0.0 2.8e-11 43.7 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|389846003|ref|YP_006348242.1| - 5.6e-09 35.7 0.1 7e-08 32.2 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|389846003|ref|YP_006348242.1| - 7.2e-08 32.4 7.2 2e-07 30.9 0.3 4.1 3 2 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|389846003|ref|YP_006348242.1| - 0.031 14.1 0.0 0.095 12.5 0.0 1.8 1 0 0 1 1 1 0 PAS domain V_ATPase_I PF01496.14 gi|389846003|ref|YP_006348242.1| - 0.043 11.6 14.9 0.065 11.0 10.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF713 PF05218.9 gi|389846003|ref|YP_006348242.1| - 0.16 11.7 1.2 9.5 5.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF713) Sec5 PF15469.1 gi|389846003|ref|YP_006348242.1| - 0.45 10.2 11.6 2 8.1 0.1 3.4 1 1 2 4 4 4 0 Exocyst complex component Sec5 PAS_7 PF12860.2 gi|389846003|ref|YP_006348242.1| - 0.54 10.2 9.0 0.69 9.9 0.0 4.4 2 2 2 5 5 5 0 PAS fold DUF489 PF04356.7 gi|389846003|ref|YP_006348242.1| - 0.71 9.4 13.0 0.87 9.1 0.6 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF489) TPR_MLP1_2 PF07926.7 gi|389846003|ref|YP_006348242.1| - 0.8 9.4 28.0 0.038 13.7 6.3 2.9 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Mnd1 PF03962.10 gi|389846003|ref|YP_006348242.1| - 1.4 8.5 24.1 1.5 8.4 4.4 2.9 2 1 1 3 3 3 0 Mnd1 family DUF3450 PF11932.3 gi|389846003|ref|YP_006348242.1| - 2.2 7.5 35.9 0.085 12.1 4.4 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) IncA PF04156.9 gi|389846003|ref|YP_006348242.1| - 2.7 7.5 21.2 8.5 5.9 6.4 3.3 1 1 1 2 2 2 0 IncA protein TMP_2 PF06791.8 gi|389846003|ref|YP_006348242.1| - 3 7.3 42.7 0.28 10.7 8.7 4.1 1 1 3 5 5 5 0 Prophage tail length tape measure protein Rep_fac-A_3 PF08661.6 gi|389846003|ref|YP_006348242.1| - 3.2 7.7 6.7 1.1 9.1 0.1 3.1 3 1 1 4 4 4 0 Replication factor A protein 3 Fzo_mitofusin PF04799.8 gi|389846003|ref|YP_006348242.1| - 6.4 6.1 13.8 1.4 8.2 0.2 3.7 2 2 1 4 4 4 0 fzo-like conserved region Reo_sigmaC PF04582.7 gi|389846003|ref|YP_006348242.1| - 7.1 5.6 30.1 3.6 6.6 6.9 3.1 1 1 2 3 3 3 0 Reovirus sigma C capsid protein APG6 PF04111.7 gi|389846003|ref|YP_006348242.1| - 7.2 5.5 18.0 5.3 5.9 3.9 2.4 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF948 PF06103.6 gi|389846003|ref|YP_006348242.1| - 7.5 6.4 33.9 3.3 7.6 2.2 5.4 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) ThiF PF00899.16 gi|389846004|ref|YP_006348243.1| - 1.6e-46 157.4 0.1 2.5e-46 156.8 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|389846004|ref|YP_006348243.1| - 7.1e-34 115.2 0.1 1.1e-33 114.6 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|389846004|ref|YP_006348243.1| - 0.00057 18.9 0.2 0.00078 18.5 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|389846004|ref|YP_006348243.1| - 0.0041 17.2 0.6 0.011 15.7 0.2 1.8 1 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|389846004|ref|YP_006348243.1| - 0.01 16.0 0.1 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Rhodanese PF00581.15 gi|389846005|ref|YP_006348244.1| - 9.6e-14 51.6 0.0 1.4e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain Ribosomal_L15e PF00827.12 gi|389846006|ref|YP_006348245.1| - 4.4e-82 274.2 7.9 5.1e-82 274.0 5.5 1.0 1 0 0 1 1 1 1 Ribosomal L15 Esterase PF00756.15 gi|389846007|ref|YP_006348246.1| - 7.2e-35 120.6 0.0 8.5e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.2 gi|389846007|ref|YP_006348246.1| - 0.00014 21.7 0.2 0.00022 21.1 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389846007|ref|YP_006348246.1| - 0.0062 16.1 0.3 0.07 12.6 0.1 2.2 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389846007|ref|YP_006348246.1| - 0.016 14.9 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|389846007|ref|YP_006348246.1| - 0.068 12.5 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|389846007|ref|YP_006348246.1| - 0.07 12.3 0.0 2.1 7.5 0.0 2.3 1 1 1 2 2 2 0 Prolyl oligopeptidase family Alpha-amylase PF00128.19 gi|389846008|ref|YP_006348247.1| - 6.3e-56 190.0 0.0 9.5e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|389846008|ref|YP_006348247.1| - 2.1e-11 43.7 0.0 7.5e-11 42.0 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.13 gi|389846008|ref|YP_006348247.1| - 0.031 14.3 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.1 gi|389846008|ref|YP_006348247.1| - 0.034 13.0 0.0 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Glyco_hydro_42C PF08533.5 gi|389846008|ref|YP_006348247.1| - 0.041 13.3 0.0 0.31 10.5 0.0 2.5 3 0 0 3 3 3 0 Beta-galactosidase C-terminal domain Lar_restr_allev PF14354.1 gi|389846009|ref|YP_006348248.1| - 0.00033 20.8 2.8 0.13 12.5 0.1 2.7 2 0 0 2 2 2 2 Restriction alleviation protein Lar zf-LITAF-like PF10601.4 gi|389846009|ref|YP_006348248.1| - 0.008 16.0 7.3 2.5 8.0 0.0 4.1 3 1 0 4 4 4 1 LITAF-like zinc ribbon domain DZR PF12773.2 gi|389846009|ref|YP_006348248.1| - 0.0084 15.9 6.8 0.032 14.0 0.4 2.7 2 1 0 2 2 2 1 Double zinc ribbon HTH_20 PF12840.2 gi|389846009|ref|YP_006348248.1| - 0.014 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Cys_rich_CPXG PF14255.1 gi|389846009|ref|YP_006348248.1| - 0.021 14.6 7.1 0.033 14.0 0.1 3.1 3 0 0 3 3 2 0 Cysteine-rich CPXCG zinc-ribbons_6 PF07191.7 gi|389846009|ref|YP_006348248.1| - 0.046 13.5 4.0 0.68 9.7 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|389846009|ref|YP_006348248.1| - 0.051 13.0 5.3 1.2 8.6 0.1 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|389846009|ref|YP_006348248.1| - 0.086 12.1 7.1 0.15 11.4 0.4 3.6 3 1 0 3 3 3 0 TFIIB zinc-binding RNHCP PF12647.2 gi|389846009|ref|YP_006348248.1| - 0.089 12.6 5.4 0.15 11.9 2.0 2.2 1 1 1 2 2 2 0 RNHCP domain TerY-C PF15616.1 gi|389846009|ref|YP_006348248.1| - 0.1 12.5 0.5 1 9.3 0.0 2.3 2 0 0 2 2 2 0 TerY-C metal binding domain zf-IS66 PF13005.2 gi|389846009|ref|YP_006348248.1| - 0.15 12.0 15.0 1.4 8.9 0.1 4.1 2 2 2 4 4 4 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|389846009|ref|YP_006348248.1| - 0.16 11.6 13.5 0.066 12.9 2.0 3.9 4 0 0 4 4 4 0 Nudix N-terminal C1_1 PF00130.17 gi|389846009|ref|YP_006348248.1| - 0.23 11.2 3.0 2.4 7.9 0.3 2.7 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|389846009|ref|YP_006348248.1| - 0.42 10.4 11.1 4.2 7.2 1.8 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-RING_5 PF14634.1 gi|389846009|ref|YP_006348248.1| - 0.44 10.3 3.1 0.87 9.3 0.2 2.3 2 0 0 2 2 2 0 zinc-RING finger domain DNA_ligase_ZBD PF03119.11 gi|389846009|ref|YP_006348248.1| - 0.47 10.1 6.6 1.1 8.9 0.0 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|389846009|ref|YP_006348248.1| - 0.52 10.0 10.7 4.3 7.1 0.0 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DnaJ_CXXCXGXG PF00684.14 gi|389846009|ref|YP_006348248.1| - 0.87 9.6 3.5 2.1 8.4 0.0 2.4 2 1 0 2 2 2 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|389846009|ref|YP_006348248.1| - 1 8.6 12.3 7 5.9 0.1 4.3 3 1 2 5 5 5 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|389846009|ref|YP_006348248.1| - 1 9.0 4.3 7.1 6.4 0.8 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-Mss51 PF13824.1 gi|389846009|ref|YP_006348248.1| - 1.3 8.9 10.0 0.25 11.2 1.5 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|389846009|ref|YP_006348248.1| - 1.6 8.3 8.3 11 5.6 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain DUF1272 PF06906.6 gi|389846009|ref|YP_006348248.1| - 2 8.3 10.1 8.4 6.3 0.1 3.6 3 1 1 4 4 3 0 Protein of unknown function (DUF1272) zf-RING_2 PF13639.1 gi|389846009|ref|YP_006348248.1| - 2.6 7.9 5.7 12 5.7 0.7 2.5 2 0 0 2 2 2 0 Ring finger domain zf-C3HC4_3 PF13920.1 gi|389846009|ref|YP_006348248.1| - 2.6 7.7 8.1 2.7 7.7 0.4 2.7 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|389846009|ref|YP_006348248.1| - 2.8 7.6 6.3 2.1 8.0 0.5 2.4 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|389846009|ref|YP_006348248.1| - 3.2 7.5 8.1 2.1 8.1 1.3 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|389846009|ref|YP_006348248.1| - 3.4 7.6 14.1 1.3 9.0 2.3 3.8 2 2 1 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|389846009|ref|YP_006348248.1| - 4.5 7.0 7.3 0.6 9.8 0.5 2.4 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|389846009|ref|YP_006348248.1| - 5.9 6.6 6.7 13 5.5 0.0 3.1 4 0 0 4 4 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|389846009|ref|YP_006348248.1| - 7.4 5.8 11.6 2.7 7.2 1.9 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger Alpha-amylase PF00128.19 gi|389846010|ref|YP_006348249.1| - 1.5e-82 277.5 5.3 2.3e-82 276.9 3.7 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.14 gi|389846010|ref|YP_006348249.1| - 1.1e-33 114.7 0.5 2.5e-33 113.5 0.4 1.6 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.19 gi|389846010|ref|YP_006348249.1| - 2e-10 40.4 1.3 5.4e-10 39.1 0.9 1.7 1 0 0 1 1 1 1 IPT/TIG domain TAT_signal PF10518.4 gi|389846010|ref|YP_006348249.1| - 0.077 13.0 1.4 0.19 11.8 1.0 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|662859338|ref|YP_006348250.2| - 2.3e-15 56.5 16.3 2.3e-15 56.5 11.3 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389846012|ref|YP_006348251.1| - 5.5e-16 58.6 15.2 5.5e-16 58.6 10.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|389846013|ref|YP_006348252.1| - 1.3e-35 123.5 5.3 1.8e-35 123.0 3.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389846013|ref|YP_006348252.1| - 6.4e-22 78.6 8.8 6.4e-22 78.6 6.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389846013|ref|YP_006348252.1| - 0.0024 17.7 1.3 0.0058 16.5 0.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AF-4 PF05110.8 gi|389846013|ref|YP_006348252.1| - 1.1 6.9 6.2 1.5 6.5 4.3 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein ABC_tran PF00005.22 gi|662859339|ref|YP_006348253.2| - 5e-32 111.0 0.0 8.4e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|662859339|ref|YP_006348253.2| - 3.7e-07 30.0 0.0 1.5e-06 28.1 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|662859339|ref|YP_006348253.2| - 6.1e-07 29.6 0.1 0.0017 18.3 0.0 2.5 2 1 0 3 3 3 2 AAA domain TOBE PF03459.12 gi|662859339|ref|YP_006348253.2| - 5.6e-05 23.1 0.6 0.00099 19.1 0.0 3.0 3 1 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|662859339|ref|YP_006348253.2| - 0.00019 20.7 0.1 0.00057 19.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|662859339|ref|YP_006348253.2| - 0.0055 16.7 0.1 0.0094 15.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|662859339|ref|YP_006348253.2| - 0.009 16.1 0.5 0.019 15.0 0.3 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|662859339|ref|YP_006348253.2| - 0.021 14.0 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|662859339|ref|YP_006348253.2| - 0.022 13.4 0.0 0.029 13.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|662859339|ref|YP_006348253.2| - 0.034 14.9 0.0 0.094 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|662859339|ref|YP_006348253.2| - 0.043 13.3 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|662859339|ref|YP_006348253.2| - 0.057 13.3 0.3 0.13 12.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|662859339|ref|YP_006348253.2| - 0.059 12.7 0.1 0.1 11.9 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|662859339|ref|YP_006348253.2| - 0.061 13.6 0.1 0.21 11.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|662859339|ref|YP_006348253.2| - 0.074 12.6 0.0 0.66 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|662859339|ref|YP_006348253.2| - 0.13 11.0 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Glyco_hydro_15 PF00723.16 gi|389846015|ref|YP_006348254.1| - 0.089 11.3 0.1 5.4 5.4 0.0 2.5 2 1 0 2 2 2 0 Glycosyl hydrolases family 15 Regulator_TrmB PF11495.3 gi|389846016|ref|YP_006348255.1| - 6.9e-67 224.8 0.0 8.7e-67 224.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|389846016|ref|YP_006348255.1| - 5.7e-14 51.5 0.0 1.3e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389846016|ref|YP_006348255.1| - 0.00038 20.1 0.0 0.00081 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|389846016|ref|YP_006348255.1| - 0.0043 17.1 0.5 0.65 10.1 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389846016|ref|YP_006348255.1| - 0.0047 16.5 0.5 5.2 6.7 0.0 3.2 2 1 1 3 3 3 1 HTH domain HTH_Crp_2 PF13545.1 gi|389846016|ref|YP_006348255.1| - 0.0089 15.7 0.0 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|389846016|ref|YP_006348255.1| - 0.011 15.4 0.0 0.054 13.1 0.0 2.2 2 0 0 2 2 2 0 MarR family PLDc_2 PF13091.1 gi|389846016|ref|YP_006348255.1| - 0.032 13.9 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain Rrf2 PF02082.15 gi|389846016|ref|YP_006348255.1| - 0.041 13.9 0.0 0.088 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|389846016|ref|YP_006348255.1| - 0.052 12.9 0.2 0.23 10.8 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389846016|ref|YP_006348255.1| - 0.075 12.6 0.0 0.28 10.8 0.0 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF2685 PF10886.3 gi|389846016|ref|YP_006348255.1| - 0.087 12.8 0.0 1.5 8.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2685) HTH_23 PF13384.1 gi|389846016|ref|YP_006348255.1| - 0.13 11.9 0.0 0.5 10.0 0.0 2.0 1 1 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|389846016|ref|YP_006348255.1| - 0.14 12.3 0.1 0.66 10.1 0.1 2.2 1 1 0 1 1 1 0 Winged helix-turn helix F420_oxidored PF03807.12 gi|389846016|ref|YP_006348255.1| - 0.15 12.5 0.2 0.38 11.2 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PcrB PF01884.12 gi|389846017|ref|YP_006348256.1| - 7.4e-34 116.9 0.7 1.6e-33 115.8 0.5 1.5 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|389846017|ref|YP_006348256.1| - 0.00012 21.4 0.0 0.00021 20.6 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|389846017|ref|YP_006348256.1| - 0.028 12.9 0.0 0.33 9.4 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|389846017|ref|YP_006348256.1| - 0.13 11.1 0.0 2.3 7.0 0.0 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ADH_zinc_N_2 PF13602.1 gi|389846018|ref|YP_006348257.1| - 2.7e-26 92.9 0.4 1.1e-25 90.9 0.2 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|389846018|ref|YP_006348257.1| - 4.1e-20 71.6 0.0 6.6e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389846018|ref|YP_006348257.1| - 1.8e-10 40.5 0.0 5.2e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ACP_syn_III_C PF08541.5 gi|389846018|ref|YP_006348257.1| - 0.09 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FMN_red PF03358.10 gi|389846019|ref|YP_006348258.1| - 4.8e-34 117.0 0.0 6.1e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|389846019|ref|YP_006348258.1| - 3e-08 33.4 0.0 3.9e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold META PF03724.11 gi|389846020|ref|YP_006348259.1| - 0.0012 18.6 5.0 0.29 10.9 0.1 2.7 2 1 0 2 2 2 2 META domain RIO1 PF01163.17 gi|389846021|ref|YP_006348260.1| - 1.3e-47 161.5 0.0 1.9e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|389846021|ref|YP_006348260.1| - 4.7e-28 97.0 0.0 8.9e-28 96.1 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|389846021|ref|YP_006348260.1| - 4.9e-05 23.1 0.2 0.2 11.3 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family NUDIX PF00293.23 gi|389846022|ref|YP_006348261.1| - 1.3e-17 63.6 0.8 1.6e-17 63.3 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|389846022|ref|YP_006348261.1| - 0.017 14.5 0.0 0.037 13.4 0.0 1.6 1 1 0 1 1 1 0 NUDIX domain Glyoxalase_2 PF12681.2 gi|389846023|ref|YP_006348262.1| - 2.5e-08 34.4 0.9 8.6e-07 29.5 0.1 2.8 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389846023|ref|YP_006348262.1| - 0.00018 21.4 0.1 0.036 14.0 0.0 2.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389846023|ref|YP_006348262.1| - 0.0025 17.7 0.1 3.5 7.6 0.0 3.1 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r1_1 PF03979.9 gi|389846023|ref|YP_006348262.1| - 0.15 11.9 0.2 0.25 11.3 0.1 1.3 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 BPL_LplA_LipB PF03099.14 gi|662859340|ref|YP_006348263.2| - 2.6e-18 66.2 0.0 4.2e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family AP_endonuc_2 PF01261.19 gi|662859341|ref|YP_006348264.2| - 5.6e-22 78.0 0.5 9.4e-22 77.3 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Exo_endo_phos PF03372.18 gi|389846026|ref|YP_006348265.1| - 1.3e-11 44.9 0.0 1.7e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Methyltransf_11 PF08241.7 gi|389846027|ref|YP_006348266.1| - 8.7e-20 71.0 0.1 1.8e-19 70.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846027|ref|YP_006348266.1| - 3.2e-17 62.5 0.0 4.6e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846027|ref|YP_006348266.1| - 1.6e-13 50.8 0.0 2.9e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846027|ref|YP_006348266.1| - 2.9e-12 47.1 0.1 8.1e-12 45.7 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846027|ref|YP_006348266.1| - 3.4e-12 46.3 0.0 5.3e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846027|ref|YP_006348266.1| - 2.3e-10 40.8 0.0 4.6e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846027|ref|YP_006348266.1| - 3e-10 39.6 0.0 4.6e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|389846027|ref|YP_006348266.1| - 4.6e-10 39.5 0.5 2.6e-09 37.1 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|389846027|ref|YP_006348266.1| - 6.8e-09 35.3 0.0 1.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|389846027|ref|YP_006348266.1| - 3.7e-05 22.8 0.0 5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.11 gi|389846027|ref|YP_006348266.1| - 7.9e-05 21.1 0.0 0.0001 20.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|389846027|ref|YP_006348266.1| - 0.00012 21.5 0.0 0.00023 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.14 gi|389846027|ref|YP_006348266.1| - 0.00028 20.9 0.0 0.00042 20.3 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|389846027|ref|YP_006348266.1| - 0.00068 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|389846027|ref|YP_006348266.1| - 0.002 17.6 0.0 0.0048 16.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|389846027|ref|YP_006348266.1| - 0.0029 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|389846027|ref|YP_006348266.1| - 0.0066 15.6 0.0 0.0095 15.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|389846027|ref|YP_006348266.1| - 0.007 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|389846027|ref|YP_006348266.1| - 0.016 13.8 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|389846027|ref|YP_006348266.1| - 0.094 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase NAD_binding_10 PF13460.1 gi|389846028|ref|YP_006348267.1| - 2e-38 132.2 2.3 2.3e-38 132.0 1.6 1.0 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|389846028|ref|YP_006348267.1| - 2.5e-09 36.9 0.1 3.4e-09 36.4 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|389846028|ref|YP_006348267.1| - 6.7e-07 29.3 0.4 1.4e-06 28.2 0.3 1.6 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|389846028|ref|YP_006348267.1| - 1.8e-05 23.9 0.3 2.3e-05 23.5 0.2 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|389846028|ref|YP_006348267.1| - 3.3e-05 23.2 0.1 4.8e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|389846028|ref|YP_006348267.1| - 0.00018 21.4 3.8 0.00032 20.6 2.6 1.5 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|389846028|ref|YP_006348267.1| - 0.0025 16.7 0.1 0.0038 16.1 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DFP PF04127.10 gi|389846028|ref|YP_006348267.1| - 0.0074 15.9 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein DapB_N PF01113.15 gi|389846028|ref|YP_006348267.1| - 0.01 15.7 0.2 0.018 14.9 0.1 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|389846028|ref|YP_006348267.1| - 0.029 13.8 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3Beta_HSD PF01073.14 gi|389846028|ref|YP_006348267.1| - 0.03 13.0 0.1 0.079 11.6 0.1 1.8 1 1 1 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family CoA_binding_2 PF13380.1 gi|389846028|ref|YP_006348267.1| - 0.043 13.9 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_2 PF03446.10 gi|389846028|ref|YP_006348267.1| - 0.092 12.5 0.1 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.5 gi|389846028|ref|YP_006348267.1| - 0.75 9.4 6.7 0.36 10.4 2.7 1.9 2 1 0 2 2 2 0 KR domain HxlR PF01638.12 gi|389846029|ref|YP_006348268.1| - 3.6e-21 74.6 0.1 4.4e-21 74.3 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|389846029|ref|YP_006348268.1| - 3e-07 30.6 0.0 4.2e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|389846029|ref|YP_006348268.1| - 4.3e-07 29.8 0.0 6e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389846029|ref|YP_006348268.1| - 4.5e-07 29.4 0.0 6.3e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|389846029|ref|YP_006348268.1| - 3.5e-05 23.4 0.0 8e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 MarR family PadR PF03551.9 gi|389846029|ref|YP_006348268.1| - 0.00025 20.7 0.0 0.00038 20.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|389846029|ref|YP_006348268.1| - 0.00032 20.3 0.1 0.00046 19.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.1 gi|389846029|ref|YP_006348268.1| - 0.00033 20.5 0.0 0.0004 20.2 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_45 PF14947.1 gi|389846029|ref|YP_006348268.1| - 0.00056 19.6 0.0 0.00078 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|389846029|ref|YP_006348268.1| - 0.00058 19.4 0.0 0.00085 18.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389846029|ref|YP_006348268.1| - 0.0018 18.0 0.1 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389846029|ref|YP_006348268.1| - 0.0024 17.2 0.0 0.0039 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389846029|ref|YP_006348268.1| - 0.0078 15.7 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|389846029|ref|YP_006348268.1| - 0.013 15.3 0.2 1.2 9.1 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.5 gi|389846029|ref|YP_006348268.1| - 0.018 14.7 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|389846029|ref|YP_006348268.1| - 0.026 13.9 0.1 0.044 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3116 PF11313.3 gi|389846029|ref|YP_006348268.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) DUF2513 PF10711.4 gi|389846029|ref|YP_006348268.1| - 0.053 13.6 0.0 0.059 13.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|389846029|ref|YP_006348268.1| - 0.074 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator EDR1 PF14381.1 gi|389846029|ref|YP_006348268.1| - 0.097 12.2 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 TFIIE_alpha PF02002.12 gi|389846029|ref|YP_006348268.1| - 0.12 11.8 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.7 gi|389846029|ref|YP_006348268.1| - 0.14 11.7 0.1 0.41 10.3 0.0 1.8 1 1 1 2 2 2 0 HTH domain DUF2082 PF09855.4 gi|662859342|ref|YP_006348269.2| - 6.5e-26 89.9 0.3 7.2e-26 89.8 0.2 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|662859342|ref|YP_006348269.2| - 0.0001 22.4 0.4 0.00013 22.1 0.3 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|662859342|ref|YP_006348269.2| - 0.00022 20.3 0.9 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|662859342|ref|YP_006348269.2| - 0.0092 15.7 2.3 1.3 8.8 0.2 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|662859342|ref|YP_006348269.2| - 0.025 14.3 1.2 0.083 12.7 0.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2225 PF09986.4 gi|662859342|ref|YP_006348269.2| - 0.056 12.8 0.8 0.3 10.5 0.6 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Zn-ribbon_8 PF09723.5 gi|662859342|ref|YP_006348269.2| - 0.059 13.3 0.4 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain CpXC PF14353.1 gi|662859342|ref|YP_006348269.2| - 0.066 13.1 0.5 0.13 12.2 0.3 1.4 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|662859342|ref|YP_006348269.2| - 0.072 12.4 2.9 0.81 9.0 2.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|662859342|ref|YP_006348269.2| - 0.073 12.9 1.5 1 9.3 1.0 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|662859342|ref|YP_006348269.2| - 0.088 12.5 1.7 2.3 7.9 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|662859342|ref|YP_006348269.2| - 0.096 12.2 2.1 7.3 6.1 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.8 gi|662859342|ref|YP_006348269.2| - 0.12 11.9 2.1 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_3 PF13878.1 gi|662859342|ref|YP_006348269.2| - 0.19 11.3 1.1 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.1 gi|662859342|ref|YP_006348269.2| - 0.21 11.1 6.9 4.8 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|662859342|ref|YP_006348269.2| - 0.25 10.9 5.6 2.2 7.9 0.3 2.3 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|662859342|ref|YP_006348269.2| - 0.28 10.8 3.2 3.9 7.2 0.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ZPR1 PF03367.8 gi|662859342|ref|YP_006348269.2| - 0.34 10.0 1.4 3.2 6.8 0.0 2.0 1 1 1 2 2 2 0 ZPR1 zinc-finger domain UPF0547 PF10571.4 gi|662859342|ref|YP_006348269.2| - 0.44 10.2 6.4 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|662859342|ref|YP_006348269.2| - 0.44 10.5 3.1 3.6 7.6 1.0 2.2 2 0 0 2 2 2 0 zinc-finger NOB1_Zn_bind PF08772.6 gi|662859342|ref|YP_006348269.2| - 0.56 10.0 2.3 1.3 8.9 0.3 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S27e PF01667.12 gi|662859342|ref|YP_006348269.2| - 0.93 9.0 3.6 12 5.4 0.5 2.3 2 1 0 2 2 2 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|662859342|ref|YP_006348269.2| - 1.1 8.7 3.5 17 5.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|662859342|ref|YP_006348269.2| - 1.6 8.7 3.7 3.7 7.6 0.5 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|662859342|ref|YP_006348269.2| - 6.7 6.2 7.4 2.2 7.7 0.5 2.4 2 1 0 2 2 2 0 HypF finger ATP_bind_3 PF01171.15 gi|389846032|ref|YP_006348271.1| - 1.9e-13 50.2 0.0 2.9e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|389846032|ref|YP_006348271.1| - 0.00065 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|389846032|ref|YP_006348271.1| - 0.00082 18.3 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase DUF2392 PF10288.4 gi|389846032|ref|YP_006348271.1| - 0.0015 18.8 0.0 0.0027 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) tRNA_Me_trans PF03054.11 gi|389846032|ref|YP_006348271.1| - 0.023 13.2 0.0 0.036 12.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|389846032|ref|YP_006348271.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.9 gi|389846032|ref|YP_006348271.1| - 0.095 12.1 0.0 0.22 10.9 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) RecR PF02132.10 gi|389846032|ref|YP_006348271.1| - 0.29 10.5 4.6 0.61 9.5 0.8 3.0 3 0 0 3 3 3 0 RecR protein Copper-bind PF00127.15 gi|389846033|ref|YP_006348272.1| - 2.2e-12 47.0 0.4 6.2e-12 45.6 0.1 1.9 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family FtsZ_C PF12327.3 gi|389846034|ref|YP_006348273.1| - 6.7e-35 119.0 0.8 6.7e-35 119.0 0.6 2.8 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|389846034|ref|YP_006348273.1| - 1.9e-32 112.8 3.1 1.9e-32 112.8 2.2 2.4 2 2 1 3 3 3 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|389846034|ref|YP_006348273.1| - 0.025 14.4 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 ThiF family Methyltransf_31 PF13847.1 gi|389846034|ref|YP_006348273.1| - 0.077 12.5 0.3 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain RHH_1 PF01402.16 gi|662859344|ref|YP_006348274.2| - 1.2e-07 31.3 0.1 1.5e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|662859344|ref|YP_006348274.2| - 0.055 13.6 0.1 0.059 13.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) DZR PF12773.2 gi|389846036|ref|YP_006348275.1| - 3.6e-10 39.4 28.3 5.6e-07 29.2 6.8 2.1 1 1 2 3 3 3 3 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|389846036|ref|YP_006348275.1| - 6.2e-07 28.4 13.5 0.00018 20.6 2.7 2.6 1 1 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|389846036|ref|YP_006348275.1| - 2.8e-06 26.9 1.3 3e-05 23.7 0.5 2.7 2 1 0 2 2 1 1 Ribbon-helix-helix protein, copG family zinc_ribbon_2 PF13240.1 gi|389846036|ref|YP_006348275.1| - 4.3e-05 22.8 14.2 0.005 16.2 4.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain PolC_DP2 PF03833.8 gi|389846036|ref|YP_006348275.1| - 0.00089 17.0 0.8 0.00089 17.0 0.5 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.6 gi|389846036|ref|YP_006348275.1| - 0.00096 18.6 7.4 0.073 12.5 0.1 3.4 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain Cys_rich_KTR PF14205.1 gi|389846036|ref|YP_006348275.1| - 0.0017 17.7 1.5 0.11 11.9 0.1 2.3 2 0 0 2 2 2 1 Cysteine-rich KTR Prok-RING_1 PF14446.1 gi|389846036|ref|YP_006348275.1| - 0.0017 18.0 8.9 0.022 14.4 2.6 2.3 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|389846036|ref|YP_006348275.1| - 0.0044 16.6 3.4 0.0044 16.6 2.4 2.5 1 1 1 2 2 2 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|389846036|ref|YP_006348275.1| - 0.013 15.1 11.7 0.85 9.3 1.7 3.8 3 1 0 3 3 3 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|389846036|ref|YP_006348275.1| - 0.055 13.2 10.7 0.36 10.6 3.1 2.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DGF-1_C PF11040.3 gi|389846036|ref|YP_006348275.1| - 0.069 13.0 0.5 0.17 11.8 0.3 1.6 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus Zn_Tnp_IS91 PF14319.1 gi|389846036|ref|YP_006348275.1| - 0.1 12.0 5.3 0.19 11.2 3.7 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2191 PF09957.4 gi|389846036|ref|YP_006348275.1| - 0.12 12.2 0.2 0.59 9.9 0.2 2.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) UPF0547 PF10571.4 gi|389846036|ref|YP_006348275.1| - 0.19 11.4 8.5 2 8.1 0.1 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2894 PF11445.3 gi|389846036|ref|YP_006348275.1| - 0.19 11.9 1.6 0.29 11.3 1.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2894) DUF2321 PF10083.4 gi|389846036|ref|YP_006348275.1| - 0.54 9.7 7.0 0.23 10.9 1.5 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C3HC4_3 PF13920.1 gi|389846036|ref|YP_006348275.1| - 0.59 9.8 6.1 5.9 6.6 4.2 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|389846036|ref|YP_006348275.1| - 0.81 9.5 9.4 0.57 9.9 3.4 2.3 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|389846036|ref|YP_006348275.1| - 1.4 9.1 8.6 1.9 8.6 3.5 2.6 2 1 0 2 2 1 0 Ribosomal L32p protein family zf-UBR PF02207.15 gi|389846036|ref|YP_006348275.1| - 1.5 8.5 9.5 3.4 7.4 6.6 1.6 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-dskA_traR PF01258.12 gi|389846036|ref|YP_006348275.1| - 1.6 8.5 15.8 2.1 8.1 0.1 3.7 3 1 1 4 4 3 0 Prokaryotic dksA/traR C4-type zinc finger C1_1 PF00130.17 gi|389846036|ref|YP_006348275.1| - 1.9 8.2 9.1 2.8 7.7 4.4 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2 PF00096.21 gi|389846036|ref|YP_006348275.1| - 2.5 8.6 6.8 7.6 7.1 0.0 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type Sgf11 PF08209.6 gi|389846036|ref|YP_006348275.1| - 2.6 7.4 7.7 2.1 7.6 0.1 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|389846036|ref|YP_006348275.1| - 3 7.8 10.2 14 5.6 2.6 3.3 2 1 1 3 3 3 0 Zinc ribbon domain TerY-C PF15616.1 gi|389846036|ref|YP_006348275.1| - 3.1 7.7 11.1 14 5.5 7.7 2.1 1 1 0 1 1 1 0 TerY-C metal binding domain zf-ISL3 PF14690.1 gi|389846036|ref|YP_006348275.1| - 4.9 7.2 8.9 3.2 7.8 0.5 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AP_endonuc_2 PF01261.19 gi|662859345|ref|YP_006348276.2| - 6.4e-25 87.7 0.6 8.3e-25 87.3 0.4 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel 2-ph_phosp PF04029.9 gi|389846038|ref|YP_006348277.1| - 6.3e-24 84.2 0.0 8.2e-24 83.8 0.0 1.2 1 1 0 1 1 1 1 2-phosphosulpholactate phosphatase Peripla_BP_6 PF13458.1 gi|389846038|ref|YP_006348277.1| - 0.017 14.4 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein PrpR_N PF06506.6 gi|389846038|ref|YP_006348277.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 Propionate catabolism activator DUF728 PF05304.7 gi|389846039|ref|YP_006348278.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF728) ABC_tran PF00005.22 gi|389846041|ref|YP_006348280.1| - 2.9e-51 173.3 0.0 1.2e-26 93.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|389846041|ref|YP_006348280.1| - 1.3e-19 71.2 0.2 3.1e-06 27.3 0.0 4.1 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389846041|ref|YP_006348280.1| - 8.4e-17 61.1 0.8 8.5e-08 31.6 0.0 3.5 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389846041|ref|YP_006348280.1| - 2.5e-09 36.5 0.7 3.5e-05 23.2 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain T2SE PF00437.15 gi|389846041|ref|YP_006348280.1| - 3.1e-07 29.5 0.1 0.01 14.7 0.0 3.1 2 1 0 3 3 3 2 Type II/IV secretion system protein AAA_13 PF13166.1 gi|389846041|ref|YP_006348280.1| - 6.4e-06 24.9 0.0 0.32 9.4 0.1 3.8 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|389846041|ref|YP_006348280.1| - 1e-05 25.9 0.0 0.028 14.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|389846041|ref|YP_006348280.1| - 2.3e-05 23.9 1.6 0.012 15.0 0.2 2.9 3 1 0 3 3 2 1 AAA-like domain AAA_28 PF13521.1 gi|389846041|ref|YP_006348280.1| - 2.7e-05 24.1 0.1 0.44 10.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|389846041|ref|YP_006348280.1| - 4.1e-05 23.0 1.6 0.19 11.1 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|389846041|ref|YP_006348280.1| - 4.8e-05 23.5 3.1 0.075 13.1 0.1 3.4 2 2 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|389846041|ref|YP_006348280.1| - 5.3e-05 22.8 0.9 0.088 12.3 0.0 3.2 4 0 0 4 4 3 1 AAA domain AAA_16 PF13191.1 gi|389846041|ref|YP_006348280.1| - 6.8e-05 22.9 16.8 0.0077 16.2 1.4 4.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|389846041|ref|YP_006348280.1| - 0.00012 22.4 0.7 0.44 10.8 0.0 3.8 4 0 0 4 4 3 1 AAA domain ATP_bind_1 PF03029.12 gi|389846041|ref|YP_006348280.1| - 0.00013 21.5 0.4 0.31 10.5 0.1 3.2 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.16 gi|389846041|ref|YP_006348280.1| - 0.00013 21.1 0.0 0.34 10.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|389846041|ref|YP_006348280.1| - 0.00032 20.3 0.9 0.27 10.8 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_19 PF13245.1 gi|389846041|ref|YP_006348280.1| - 0.00035 20.2 1.3 0.52 10.0 0.0 3.3 3 0 0 3 3 2 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|389846041|ref|YP_006348280.1| - 0.00046 19.7 0.3 0.27 10.6 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|389846041|ref|YP_006348280.1| - 0.00055 19.5 0.0 0.6 9.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|389846041|ref|YP_006348280.1| - 0.00062 19.6 0.3 0.43 10.5 0.0 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|389846041|ref|YP_006348280.1| - 0.00075 19.3 1.1 0.19 11.6 0.1 3.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|389846041|ref|YP_006348280.1| - 0.00076 19.2 2.4 0.49 10.1 0.2 3.0 3 1 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|389846041|ref|YP_006348280.1| - 0.0013 19.2 0.0 0.44 11.0 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein AAA_15 PF13175.1 gi|389846041|ref|YP_006348280.1| - 0.0013 17.8 0.0 0.84 8.6 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain DUF3584 PF12128.3 gi|389846041|ref|YP_006348280.1| - 0.0026 15.1 0.6 0.34 8.1 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) G-alpha PF00503.15 gi|389846041|ref|YP_006348280.1| - 0.0028 16.4 0.0 1.1 7.8 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit DUF87 PF01935.12 gi|389846041|ref|YP_006348280.1| - 0.0035 17.1 0.2 0.83 9.4 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|389846041|ref|YP_006348280.1| - 0.0058 16.5 0.1 2.5 8.0 0.0 3.1 2 1 0 3 3 2 1 AAA domain RNA_helicase PF00910.17 gi|389846041|ref|YP_006348280.1| - 0.0062 16.7 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase IstB_IS21 PF01695.12 gi|389846041|ref|YP_006348280.1| - 0.0066 15.8 0.1 2.4 7.5 0.0 3.4 4 0 0 4 4 3 1 IstB-like ATP binding protein ArgK PF03308.11 gi|389846041|ref|YP_006348280.1| - 0.0075 15.0 0.3 0.024 13.4 0.0 1.8 2 0 0 2 2 2 1 ArgK protein NB-ARC PF00931.17 gi|389846041|ref|YP_006348280.1| - 0.0078 15.0 0.6 0.9 8.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain DUF258 PF03193.11 gi|389846041|ref|YP_006348280.1| - 0.01 15.0 0.1 0.33 10.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|389846041|ref|YP_006348280.1| - 0.011 15.1 0.5 2.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|389846041|ref|YP_006348280.1| - 0.012 15.3 0.1 0.33 10.6 0.0 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|389846041|ref|YP_006348280.1| - 0.012 14.7 0.3 1.5 7.9 0.0 2.4 2 0 0 2 2 2 0 KaiC MMR_HSR1 PF01926.18 gi|389846041|ref|YP_006348280.1| - 0.014 15.3 0.0 0.18 11.8 0.0 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|389846041|ref|YP_006348280.1| - 0.019 15.7 13.9 0.12 13.1 0.3 4.0 2 2 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|389846041|ref|YP_006348280.1| - 0.028 14.1 0.0 5.7 6.6 0.0 2.6 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.7 gi|389846041|ref|YP_006348280.1| - 0.046 12.7 0.0 1.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin ATP-synt_ab PF00006.20 gi|389846041|ref|YP_006348280.1| - 0.049 13.1 0.0 6 6.2 0.0 2.5 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|389846041|ref|YP_006348280.1| - 0.054 13.1 0.6 12 5.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|389846041|ref|YP_006348280.1| - 0.077 12.4 1.7 2.9 7.3 0.0 2.7 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|389846041|ref|YP_006348280.1| - 0.083 11.4 4.4 3.3 6.1 0.0 3.1 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|389846041|ref|YP_006348280.1| - 0.12 12.0 0.0 11 5.6 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase Thymidylate_kin PF02223.12 gi|389846041|ref|YP_006348280.1| - 0.13 11.6 0.0 9.7 5.5 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase SRP54 PF00448.17 gi|389846041|ref|YP_006348280.1| - 0.13 11.6 1.0 11 5.3 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DLIC PF05783.6 gi|389846041|ref|YP_006348280.1| - 0.15 10.7 0.0 9.1 4.8 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA PF00004.24 gi|389846041|ref|YP_006348280.1| - 0.15 12.2 0.1 28 4.9 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|389846041|ref|YP_006348280.1| - 0.16 10.8 0.2 0.39 9.6 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF815) Pox_A32 PF04665.7 gi|389846041|ref|YP_006348280.1| - 0.17 11.1 0.6 14 4.9 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein CbiQ PF02361.11 gi|662859347|ref|YP_006348281.2| - 3.9e-12 46.2 15.3 3.9e-12 46.2 10.6 2.5 2 1 0 2 2 2 1 Cobalt transport protein PRCC PF10253.4 gi|389846043|ref|YP_006348282.1| - 0.075 13.7 3.4 0.12 13.0 2.3 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Presenilin PF01080.12 gi|389846043|ref|YP_006348282.1| - 6.6 5.4 5.5 9.1 4.9 3.8 1.1 1 0 0 1 1 1 0 Presenilin AhpC-TSA PF00578.16 gi|389846044|ref|YP_006348283.1| - 1.3e-20 73.3 0.0 1.5e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389846044|ref|YP_006348283.1| - 2.7e-17 62.6 0.0 3.2e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|389846044|ref|YP_006348283.1| - 0.011 15.6 0.2 1.2 9.0 0.0 2.2 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme CHASE4 PF05228.8 gi|389846044|ref|YP_006348283.1| - 0.089 12.3 0.1 1 8.9 0.0 2.0 1 1 1 2 2 2 0 CHASE4 domain HAD_2 PF13419.1 gi|389846045|ref|YP_006348284.1| - 8.8e-19 68.3 0.0 1e-18 68.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389846045|ref|YP_006348284.1| - 1.2e-09 38.8 0.1 8.7e-09 36.0 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389846045|ref|YP_006348284.1| - 2e-05 24.1 0.0 4.6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Peripla_BP_3 PF13377.1 gi|389846045|ref|YP_006348284.1| - 0.018 15.0 1.5 4.9 7.1 0.0 3.1 2 1 0 3 3 3 0 Periplasmic binding protein-like domain CobD_Cbib PF03186.8 gi|662859348|ref|YP_006348285.2| - 4.4e-71 239.3 11.1 5.2e-71 239.1 7.7 1.0 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|389846048|ref|YP_006348287.1| - 3.4e-40 138.1 12.1 4.3e-40 137.7 8.4 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.2 gi|389846049|ref|YP_006348288.1| - 4.4e-17 62.6 0.9 5.2e-17 62.3 0.7 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|389846049|ref|YP_006348288.1| - 0.0006 19.3 0.1 0.002 17.7 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|389846049|ref|YP_006348288.1| - 0.002 17.4 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|389846049|ref|YP_006348288.1| - 0.03 13.9 0.0 0.14 11.7 0.0 2.0 1 1 0 1 1 1 0 Cytidylyltransferase DBI_PRT PF02277.12 gi|389846050|ref|YP_006348289.1| - 1.7e-15 56.9 1.2 3e-15 56.1 0.9 1.4 1 0 0 1 1 1 1 Phosphoribosyltransferase Aminotran_1_2 PF00155.16 gi|389846051|ref|YP_006348290.1| - 6.8e-39 133.8 0.0 9e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CbiZ PF01955.13 gi|389846052|ref|YP_006348291.1| - 5.2e-41 140.5 0.0 6.5e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DUF4440 PF14534.1 gi|389846052|ref|YP_006348291.1| - 0.097 12.8 0.1 0.18 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Aminotran_1_2 PF00155.16 gi|389846053|ref|YP_006348292.1| - 7.6e-26 90.9 0.0 9.3e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CbiA PF01656.18 gi|389846054|ref|YP_006348293.1| - 4.5e-25 88.1 0.2 5.4e-25 87.9 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|389846054|ref|YP_006348293.1| - 2.2e-08 33.6 0.0 6.7e-05 22.1 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|389846054|ref|YP_006348293.1| - 3.6e-08 33.4 0.0 4.7e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|389846054|ref|YP_006348293.1| - 1e-05 24.7 0.0 0.002 17.2 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.6 gi|389846054|ref|YP_006348293.1| - 9e-05 21.6 0.5 0.00053 19.1 0.3 1.9 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|389846054|ref|YP_006348293.1| - 0.0015 18.2 0.2 0.0086 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|389846054|ref|YP_006348293.1| - 0.0024 17.4 0.7 0.038 13.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|389846054|ref|YP_006348293.1| - 0.0041 16.5 0.1 0.0072 15.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|389846054|ref|YP_006348293.1| - 0.019 14.0 0.2 0.03 13.3 0.2 1.3 1 0 0 1 1 1 0 VirC1 protein ParA PF10609.4 gi|389846054|ref|YP_006348293.1| - 0.037 13.9 0.1 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 ParA/MinD ATPase like PIF1 PF05970.9 gi|389846054|ref|YP_006348293.1| - 0.077 11.9 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase OrfB_Zn_ribbon PF07282.6 gi|389846056|ref|YP_006348295.1| - 1.8e-14 53.1 0.3 2.5e-14 52.6 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UbiA PF01040.13 gi|389846059|ref|YP_006348298.1| - 6.8e-21 74.6 26.8 8.7e-21 74.2 18.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family HATPase_c PF02518.21 gi|389846060|ref|YP_006348299.1| - 1.4e-12 47.3 0.2 3.2e-12 46.1 0.1 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|389846060|ref|YP_006348299.1| - 5.6e-06 26.6 0.1 3.9e-05 23.9 0.1 2.3 1 1 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|389846060|ref|YP_006348299.1| - 8.4e-06 25.4 0.0 3.3e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|389846060|ref|YP_006348299.1| - 3.3e-05 23.8 0.1 0.0004 20.3 0.1 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|389846060|ref|YP_006348299.1| - 0.00028 20.6 0.1 0.00056 19.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|389846060|ref|YP_006348299.1| - 0.0037 17.0 0.1 0.0097 15.6 0.0 1.7 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|389846060|ref|YP_006348299.1| - 0.0095 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4352 PF11611.3 gi|389846061|ref|YP_006348300.1| - 2.4e-35 121.3 3.1 6.2e-18 65.1 0.1 2.5 3 0 0 3 3 3 2 Domain of unknown function (DUF4352) HD PF01966.17 gi|389846063|ref|YP_006348302.1| - 1.7e-13 50.6 1.4 3.7e-13 49.5 0.1 2.2 3 0 0 3 3 3 1 HD domain HD_assoc PF13286.1 gi|389846063|ref|YP_006348302.1| - 4.2e-13 49.3 0.5 1.9e-12 47.2 0.1 2.2 2 0 0 2 2 2 1 Phosphohydrolase-associated domain DUF3161 PF11362.3 gi|389846063|ref|YP_006348302.1| - 0.083 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3161) DUF972 PF06156.8 gi|662859350|ref|YP_006348303.2| - 0.0067 16.7 0.5 0.015 15.6 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF972) HOOK PF05622.7 gi|662859350|ref|YP_006348303.2| - 0.029 12.1 1.8 0.041 11.7 1.3 1.1 1 0 0 1 1 1 0 HOOK protein AAA_23 PF13476.1 gi|662859350|ref|YP_006348303.2| - 0.087 13.1 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|662859350|ref|YP_006348303.2| - 0.13 11.8 3.4 0.2 11.2 2.3 1.2 1 0 0 1 1 1 0 IncA protein Tmemb_cc2 PF10267.4 gi|662859350|ref|YP_006348303.2| - 0.14 10.6 0.7 0.21 10.1 0.5 1.3 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein CCDC144C PF14915.1 gi|662859350|ref|YP_006348303.2| - 0.2 10.5 5.0 0.3 9.9 3.5 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region APG6 PF04111.7 gi|662859350|ref|YP_006348303.2| - 0.33 9.9 4.3 0.47 9.4 3.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|662859350|ref|YP_006348303.2| - 0.63 9.5 5.2 1.3 8.5 3.6 1.5 1 0 0 1 1 1 0 Septum formation initiator Kinetocho_Slk19 PF12709.2 gi|662859350|ref|YP_006348303.2| - 0.77 9.8 5.1 1.5 8.9 3.6 1.4 1 0 0 1 1 1 0 Central kinetochore-associated DUF1628 PF07790.6 gi|389846069|ref|YP_006348308.1| - 0.16 12.7 2.2 0.34 11.6 1.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|389846070|ref|YP_006348309.1| - 0.0012 19.5 0.5 0.0021 18.7 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) T2SF PF00482.18 gi|389846071|ref|YP_006348310.1| - 1.8e-15 56.9 0.2 6.8e-08 32.4 0.1 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|662859351|ref|YP_006348311.2| - 8.5e-25 87.1 0.1 2.1e-24 85.9 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|662859351|ref|YP_006348311.2| - 0.0025 17.3 0.0 0.0052 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|662859351|ref|YP_006348311.2| - 0.034 13.3 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|662859351|ref|YP_006348311.2| - 0.037 13.7 0.0 0.69 9.6 0.0 2.7 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|662859351|ref|YP_006348311.2| - 0.055 13.3 0.7 0.41 10.5 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|662859351|ref|YP_006348311.2| - 0.073 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|662859351|ref|YP_006348311.2| - 0.18 12.5 0.0 0.18 12.5 0.0 2.8 3 1 0 3 3 3 0 AAA domain HATPase_c PF02518.21 gi|662859352|ref|YP_006348312.2| - 2.6e-15 56.1 0.0 5.2e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|662859352|ref|YP_006348312.2| - 8e-09 35.5 0.2 1.4e-06 28.3 0.2 2.4 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|662859352|ref|YP_006348312.2| - 4.6e-08 32.8 0.5 1.6e-06 27.8 0.3 2.5 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|662859352|ref|YP_006348312.2| - 2.2e-07 30.6 0.0 5.1e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|662859352|ref|YP_006348312.2| - 1.6e-06 28.4 0.0 3.6e-05 24.0 0.0 2.7 1 1 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|662859352|ref|YP_006348312.2| - 1.5e-05 24.6 0.0 5.4e-05 22.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|662859352|ref|YP_006348312.2| - 0.023 14.3 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UbiA PF01040.13 gi|389846074|ref|YP_006348313.1| - 7.2e-16 58.1 23.3 9.2e-16 57.8 16.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family zf-ribbon_3 PF13248.1 gi|389846075|ref|YP_006348314.1| - 4.2e-06 25.7 0.7 7.5e-06 24.9 0.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|389846075|ref|YP_006348314.1| - 7.4e-05 21.9 1.1 0.021 14.1 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|389846075|ref|YP_006348314.1| - 0.00019 20.7 0.4 0.00037 19.8 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|389846075|ref|YP_006348314.1| - 0.00022 20.9 0.8 0.00043 20.0 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|389846075|ref|YP_006348314.1| - 0.0017 18.5 0.7 0.0025 17.9 0.5 1.3 1 0 0 1 1 1 1 TM2 domain DUF788 PF05620.6 gi|389846075|ref|YP_006348314.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF788) LRR19-TM PF15176.1 gi|389846075|ref|YP_006348314.1| - 0.018 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain UPF0547 PF10571.4 gi|389846075|ref|YP_006348314.1| - 0.048 13.3 3.9 0.091 12.4 2.7 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF3609 PF12259.3 gi|389846075|ref|YP_006348314.1| - 0.15 10.6 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3609) HypA PF01155.14 gi|389846075|ref|YP_006348314.1| - 0.17 11.5 2.2 0.19 11.4 0.5 1.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|389846075|ref|YP_006348314.1| - 0.33 10.7 2.5 1.7 8.4 1.3 2.1 1 1 1 2 2 2 0 YhfH-like protein ABC_tran PF00005.22 gi|389846077|ref|YP_006348316.1| - 1.6e-55 187.1 0.0 6.4e-28 97.7 0.0 3.1 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|389846077|ref|YP_006348316.1| - 1.4e-40 137.4 4.9 1.1e-21 76.9 0.5 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389846077|ref|YP_006348316.1| - 1.3e-16 61.3 0.2 1.4e-07 31.7 0.0 3.9 4 0 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|389846077|ref|YP_006348316.1| - 8e-08 31.7 0.2 0.0031 16.7 0.0 3.7 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389846077|ref|YP_006348316.1| - 3.7e-05 23.8 1.4 0.68 10.0 0.0 4.2 4 0 0 4 4 4 1 AAA domain ATP-synt_ab PF00006.20 gi|389846077|ref|YP_006348316.1| - 0.00011 21.7 0.0 0.49 9.8 0.0 2.5 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|389846077|ref|YP_006348316.1| - 0.0002 20.8 0.5 0.69 9.2 0.0 3.8 4 0 0 4 4 4 2 AAA domain AAA_5 PF07728.9 gi|389846077|ref|YP_006348316.1| - 0.00022 20.9 0.0 0.85 9.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|389846077|ref|YP_006348316.1| - 0.0003 20.2 1.8 0.44 10.1 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389846077|ref|YP_006348316.1| - 0.0018 18.2 4.2 0.67 9.9 0.0 3.7 4 0 0 4 4 4 2 AAA ATPase domain DUF258 PF03193.11 gi|389846077|ref|YP_006348316.1| - 0.008 15.3 0.5 1.3 8.2 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|389846077|ref|YP_006348316.1| - 0.0086 15.2 0.0 3.8 6.6 0.0 2.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|389846077|ref|YP_006348316.1| - 0.013 15.7 0.1 5.6 7.1 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.11 gi|389846077|ref|YP_006348316.1| - 0.015 14.4 0.1 3.9 6.5 0.1 2.9 3 0 0 3 3 3 0 AIG1 family AAA_18 PF13238.1 gi|389846077|ref|YP_006348316.1| - 0.025 14.8 0.0 1.4 9.2 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|389846077|ref|YP_006348316.1| - 0.06 12.3 0.1 2.1 7.3 0.0 2.4 3 0 0 3 3 3 0 AAA ATPase domain AAA_10 PF12846.2 gi|389846077|ref|YP_006348316.1| - 0.074 12.4 0.1 4.4 6.6 0.0 2.7 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|389846077|ref|YP_006348316.1| - 0.079 12.8 1.0 18 5.3 0.1 3.3 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|389846077|ref|YP_006348316.1| - 0.16 11.3 0.1 18 4.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|389846077|ref|YP_006348316.1| - 0.26 11.4 0.1 11 6.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Sigma54_activat PF00158.21 gi|389846077|ref|YP_006348316.1| - 0.72 9.3 3.3 27 4.1 0.1 3.2 4 0 0 4 4 4 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|389846077|ref|YP_006348316.1| - 2 7.2 2.7 16 4.2 0.4 2.2 2 0 0 2 2 2 0 NB-ARC domain SBP_bac_5 PF00496.17 gi|662859353|ref|YP_006348317.2| - 4e-89 299.0 1.9 5.5e-89 298.6 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|662859353|ref|YP_006348317.2| - 0.004 17.0 8.3 0.0085 16.0 5.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|389846079|ref|YP_006348318.1| - 2.3e-37 128.3 13.9 3.7e-37 127.6 9.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389846080|ref|YP_006348319.1| - 2.2e-32 112.0 9.0 2.2e-32 112.0 6.2 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389846080|ref|YP_006348319.1| - 1.4e-05 24.3 0.4 1.4e-05 24.3 0.2 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C CopD PF05425.8 gi|389846081|ref|YP_006348320.1| - 0.24 11.6 9.5 0.36 11.0 6.6 1.2 1 0 0 1 1 1 0 Copper resistance protein D Cdc6_C PF09079.6 gi|389846082|ref|YP_006348321.1| - 1.5e-23 82.2 0.0 5.7e-23 80.4 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|389846082|ref|YP_006348321.1| - 5.1e-11 42.8 0.1 2.3e-10 40.7 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389846082|ref|YP_006348321.1| - 1.2e-10 41.6 0.1 4.1e-10 39.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|389846082|ref|YP_006348321.1| - 3.3e-08 33.7 0.0 9.3e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|389846082|ref|YP_006348321.1| - 0.00016 21.4 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|389846082|ref|YP_006348321.1| - 0.00028 20.5 0.1 0.0018 17.9 0.0 2.1 1 1 0 2 2 2 1 NACHT domain NB-ARC PF00931.17 gi|389846082|ref|YP_006348321.1| - 0.0012 17.8 0.0 0.0018 17.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|389846082|ref|YP_006348321.1| - 0.0018 17.2 0.0 0.0031 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|389846082|ref|YP_006348321.1| - 0.0052 16.2 0.0 0.14 11.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|389846082|ref|YP_006348321.1| - 0.0074 16.5 0.1 0.047 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|389846082|ref|YP_006348321.1| - 0.015 15.0 0.0 0.087 12.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DEAD PF00270.24 gi|389846082|ref|YP_006348321.1| - 0.02 14.3 0.0 1.5 8.3 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|389846082|ref|YP_006348321.1| - 0.033 13.6 0.0 0.064 12.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|389846082|ref|YP_006348321.1| - 0.055 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.9 gi|389846082|ref|YP_006348321.1| - 0.057 12.4 0.1 7.8 5.3 0.0 2.2 1 1 0 2 2 2 0 KAP family P-loop domain FANCI_S3 PF14677.1 gi|389846082|ref|YP_006348321.1| - 0.058 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 FANCI solenoid 3 AAA_17 PF13207.1 gi|389846082|ref|YP_006348321.1| - 0.12 13.1 2.9 0.44 11.3 0.6 3.0 2 1 0 2 2 2 0 AAA domain SPOC PF07744.8 gi|389846082|ref|YP_006348321.1| - 0.15 12.5 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 SPOC domain DUF4129 PF13559.1 gi|389846083|ref|YP_006348322.1| - 3.1e-12 46.2 1.0 8.1e-12 44.9 0.7 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3357 PF11837.3 gi|389846083|ref|YP_006348322.1| - 0.005 16.6 0.1 1.7 8.5 0.0 3.0 2 0 0 2 2 2 2 Domain of unknown function (DUF3357) MacB_PCD PF12704.2 gi|389846083|ref|YP_006348322.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 MacB-like periplasmic core domain DUF4245 PF14030.1 gi|389846083|ref|YP_006348322.1| - 0.49 10.1 9.7 0.47 10.1 0.9 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4245) DUF58 PF01882.13 gi|389846085|ref|YP_006348324.1| - 1.5e-21 76.3 1.9 1.7e-21 76.1 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|389846085|ref|YP_006348324.1| - 1.6e-06 28.0 1.9 3e-05 23.9 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|389846085|ref|YP_006348324.1| - 0.00065 19.7 0.9 0.0017 18.3 0.7 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|389846085|ref|YP_006348324.1| - 0.028 14.4 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 CARDB AAA_3 PF07726.6 gi|389846086|ref|YP_006348325.1| - 3.7e-66 220.6 0.5 6.4e-66 219.9 0.1 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389846086|ref|YP_006348325.1| - 6.4e-15 55.0 0.0 2.1e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|389846086|ref|YP_006348325.1| - 5.6e-07 28.6 0.1 0.00027 19.8 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|389846086|ref|YP_006348325.1| - 1.8e-06 28.2 0.0 7.9e-06 26.0 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|389846086|ref|YP_006348325.1| - 9.4e-06 25.2 0.0 0.00074 19.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|389846086|ref|YP_006348325.1| - 0.0011 18.2 0.1 0.68 9.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|389846086|ref|YP_006348325.1| - 0.0015 17.5 0.3 0.026 13.5 0.2 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|389846086|ref|YP_006348325.1| - 0.062 13.2 0.0 0.3 10.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) YbgT_YccB PF08173.6 gi|389846087|ref|YP_006348326.1| - 0.025 14.4 0.7 0.042 13.6 0.5 1.4 1 0 0 1 1 1 0 Membrane bound YbgT-like protein HMGL-like PF00682.14 gi|389846089|ref|YP_006348328.1| - 9.3e-58 195.6 1.4 1.1e-57 195.4 0.2 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|389846089|ref|YP_006348328.1| - 3.7e-33 114.1 1.2 8.8e-33 112.9 0.9 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF192 PF02643.10 gi|662859354|ref|YP_009034586.1| - 2.4e-17 62.5 0.0 2.8e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF968 PF06147.6 gi|662859355|ref|YP_006348329.2| - 0.023 14.5 2.2 0.044 13.6 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF968) C1_1 PF00130.17 gi|662859355|ref|YP_006348329.2| - 0.077 12.7 4.2 0.089 12.5 0.1 2.4 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GATase PF00117.23 gi|389846091|ref|YP_006348330.1| - 7.5e-34 116.8 0.0 8.7e-34 116.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|389846091|ref|YP_006348330.1| - 2.2e-13 50.1 1.9 3.8e-12 46.1 0.2 2.8 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|389846091|ref|YP_006348330.1| - 0.014 15.0 0.1 0.032 13.8 0.0 1.7 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.4 gi|389846092|ref|YP_006348331.1| - 8.9e-51 171.8 0.3 1.5e-50 171.1 0.2 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) TF_Zn_Ribbon PF08271.7 gi|662859356|ref|YP_006348332.2| - 5e-05 22.5 0.6 0.032 13.5 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|662859356|ref|YP_006348332.2| - 0.00014 21.4 1.4 0.017 14.7 0.2 2.4 2 0 0 2 2 2 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|662859356|ref|YP_006348332.2| - 0.00042 19.4 4.6 0.0022 17.1 3.2 1.9 1 1 1 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|662859356|ref|YP_006348332.2| - 0.0019 17.5 1.4 0.5 9.8 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|662859356|ref|YP_006348332.2| - 0.0023 17.3 1.6 0.62 9.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|662859356|ref|YP_006348332.2| - 0.0029 17.2 1.4 0.43 10.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|662859356|ref|YP_006348332.2| - 0.015 14.9 1.8 0.031 13.9 1.3 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L32p PF01783.18 gi|662859356|ref|YP_006348332.2| - 0.016 15.3 0.1 1 9.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family Auto_anti-p27 PF06677.7 gi|662859356|ref|YP_006348332.2| - 0.025 14.3 0.6 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-tcix PF14952.1 gi|662859356|ref|YP_006348332.2| - 0.026 13.8 0.8 1.8 7.9 0.0 2.5 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|662859356|ref|YP_006348332.2| - 0.033 14.1 0.3 3.7 7.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|662859356|ref|YP_006348332.2| - 0.038 13.7 2.0 0.31 10.8 1.4 2.0 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|662859356|ref|YP_006348332.2| - 0.067 13.0 2.9 1.3 8.8 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|662859356|ref|YP_006348332.2| - 0.076 12.5 0.4 6.9 6.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO RecR PF02132.10 gi|662859356|ref|YP_006348332.2| - 0.078 12.4 1.0 6.2 6.3 0.1 2.3 2 0 0 2 2 2 0 RecR protein zf-RING_3 PF14369.1 gi|662859356|ref|YP_006348332.2| - 0.11 12.4 0.5 11 6.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger DUF2387 PF09526.5 gi|662859356|ref|YP_006348332.2| - 0.17 11.8 1.6 2.7 7.9 0.1 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Rubredoxin PF00301.15 gi|662859356|ref|YP_006348332.2| - 0.19 11.6 2.8 0.53 10.2 1.9 1.7 1 1 0 1 1 1 0 Rubredoxin Ribosomal_L37e PF01907.14 gi|662859356|ref|YP_006348332.2| - 0.34 10.7 3.4 0.76 9.6 0.2 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e ADK_lid PF05191.9 gi|662859356|ref|YP_006348332.2| - 0.42 10.3 5.3 1.9 8.1 0.4 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Lar_restr_allev PF14354.1 gi|662859356|ref|YP_006348332.2| - 0.47 10.7 2.8 2.2 8.6 1.9 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|662859356|ref|YP_006348332.2| - 0.58 9.7 3.2 2.7 7.5 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|662859356|ref|YP_006348332.2| - 0.64 9.7 2.3 6.6 6.5 0.4 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1610 PF07754.6 gi|662859356|ref|YP_006348332.2| - 0.84 9.8 0.1 0.84 9.8 0.1 2.5 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.3 gi|662859356|ref|YP_006348332.2| - 5.1 7.1 5.7 47 4.0 3.9 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3194 PF11419.3 gi|662859357|ref|YP_006348333.2| - 0.00017 21.7 1.0 0.00023 21.2 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|662859357|ref|YP_006348333.2| - 0.075 11.9 0.0 0.083 11.8 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) BON PF04972.12 gi|662859357|ref|YP_006348333.2| - 0.16 11.7 4.0 0.076 12.7 0.3 2.1 1 1 1 2 2 2 0 BON domain Prefoldin_2 PF01920.15 gi|389846095|ref|YP_006348334.1| - 4.4e-25 87.4 21.6 4.9e-25 87.3 15.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|389846095|ref|YP_006348334.1| - 4.8e-05 22.4 10.5 5.8e-05 22.1 7.3 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.12 gi|389846095|ref|YP_006348334.1| - 0.00018 21.1 14.5 0.00032 20.3 10.1 1.4 1 1 0 1 1 1 1 Prefoldin subunit Sigma70_ner PF04546.8 gi|389846095|ref|YP_006348334.1| - 0.014 15.0 1.4 0.014 15.0 0.9 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region Jnk-SapK_ap_N PF09744.4 gi|389846095|ref|YP_006348334.1| - 0.028 14.4 12.9 0.038 13.9 9.0 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Radical_SAM_N PF08497.5 gi|389846095|ref|YP_006348334.1| - 0.031 13.2 2.3 0.036 12.9 1.6 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal AAA_27 PF13514.1 gi|389846095|ref|YP_006348334.1| - 0.05 11.2 11.7 0.073 10.7 8.1 1.2 1 0 0 1 1 1 0 AAA domain Myb_DNA-bind_4 PF13837.1 gi|389846095|ref|YP_006348334.1| - 0.057 13.5 0.7 0.11 12.6 0.5 1.6 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain PspA_IM30 PF04012.7 gi|389846095|ref|YP_006348334.1| - 0.075 12.3 18.8 0.24 10.7 13.0 1.7 1 1 0 1 1 1 0 PspA/IM30 family Spc7 PF08317.6 gi|389846095|ref|YP_006348334.1| - 0.078 11.6 12.8 0.1 11.2 8.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein CobN-Mg_chel PF02514.11 gi|389846095|ref|YP_006348334.1| - 0.24 8.7 3.6 0.26 8.6 2.5 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase WASH-7_mid PF14744.1 gi|389846095|ref|YP_006348334.1| - 0.26 10.1 4.1 0.31 9.8 2.8 1.0 1 0 0 1 1 1 0 WASH complex subunit 7 Tape_meas_lam_C PF09718.5 gi|389846095|ref|YP_006348334.1| - 0.26 11.1 1.5 3.4 7.6 0.6 2.4 1 1 2 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF3584 PF12128.3 gi|389846095|ref|YP_006348334.1| - 0.33 8.2 13.2 0.41 7.9 9.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Laminin_I PF06008.9 gi|389846095|ref|YP_006348334.1| - 0.38 10.0 16.9 0.17 11.1 3.4 2.1 1 1 0 2 2 2 0 Laminin Domain I DUF2353 PF09789.4 gi|389846095|ref|YP_006348334.1| - 0.4 9.9 12.2 0.47 9.6 8.5 1.0 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Dor1 PF04124.7 gi|389846095|ref|YP_006348334.1| - 0.45 8.9 9.3 0.43 9.0 0.9 2.0 2 0 0 2 2 2 0 Dor1-like family Lectin_N PF03954.9 gi|389846095|ref|YP_006348334.1| - 0.47 9.8 6.6 1 8.7 4.6 1.5 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain Fib_alpha PF08702.5 gi|389846095|ref|YP_006348334.1| - 0.49 10.5 11.6 0.16 12.0 1.5 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4201 PF13870.1 gi|389846095|ref|YP_006348334.1| - 0.5 9.7 13.5 0.12 11.7 4.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Mem_trans PF03547.13 gi|389846095|ref|YP_006348334.1| - 0.52 8.5 4.2 0.58 8.3 2.9 1.1 1 0 0 1 1 1 0 Membrane transport protein Glyco_hydro_4C PF11975.3 gi|389846095|ref|YP_006348334.1| - 0.52 10.0 3.1 0.76 9.5 2.2 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Flagellin_N PF00669.15 gi|389846095|ref|YP_006348334.1| - 0.55 10.0 9.0 0.61 9.8 2.7 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region NPV_P10 PF05531.7 gi|389846095|ref|YP_006348334.1| - 0.56 10.4 9.6 0.39 10.9 1.3 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF745 PF05335.8 gi|389846095|ref|YP_006348334.1| - 0.62 9.5 11.2 0.92 8.9 7.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF2357 PF09823.4 gi|389846095|ref|YP_006348334.1| - 0.67 9.0 8.5 3.3 6.7 0.3 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF2357) UXS1_N PF11803.3 gi|389846095|ref|YP_006348334.1| - 0.68 9.7 3.0 0.73 9.6 0.2 2.2 1 1 2 3 3 2 0 UDP-glucuronate decarboxylase N-terminal IncA PF04156.9 gi|389846095|ref|YP_006348334.1| - 0.68 9.4 23.9 1.1 8.7 16.5 1.3 1 1 0 1 1 1 0 IncA protein Laminin_II PF06009.7 gi|389846095|ref|YP_006348334.1| - 0.71 9.6 11.5 3.6 7.3 8.0 1.9 1 1 0 1 1 1 0 Laminin Domain II Allexi_40kDa PF05549.6 gi|389846095|ref|YP_006348334.1| - 0.76 9.0 4.5 1.1 8.4 3.1 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF1664 PF07889.7 gi|389846095|ref|YP_006348334.1| - 0.76 9.5 10.2 1.8 8.3 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) CDC37_N PF03234.9 gi|389846095|ref|YP_006348334.1| - 0.76 10.0 11.3 0.89 9.8 7.8 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding WXG100 PF06013.7 gi|389846095|ref|YP_006348334.1| - 0.77 9.8 10.7 2.3 8.3 1.4 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG bZIP_1 PF00170.16 gi|389846095|ref|YP_006348334.1| - 0.8 9.7 17.0 0.079 12.9 3.4 2.3 2 0 0 2 2 2 0 bZIP transcription factor DUF4164 PF13747.1 gi|389846095|ref|YP_006348334.1| - 0.82 9.8 12.7 0.18 11.9 1.5 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Exonuc_VII_L PF02601.10 gi|389846095|ref|YP_006348334.1| - 0.85 8.7 8.0 1.1 8.3 5.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Med10 PF09748.4 gi|389846095|ref|YP_006348334.1| - 0.92 9.3 7.6 1e+02 2.7 5.2 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex DUF948 PF06103.6 gi|389846095|ref|YP_006348334.1| - 1 9.2 9.1 0.94 9.3 1.7 2.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) ING PF12998.2 gi|389846095|ref|YP_006348334.1| - 1.1 9.6 11.6 0.98 9.7 6.6 1.9 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Rrn6 PF10214.4 gi|389846095|ref|YP_006348334.1| - 1.2 7.1 6.9 1.3 7.0 4.8 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor Sec8_exocyst PF04048.9 gi|389846095|ref|YP_006348334.1| - 1.2 8.7 9.2 0.25 10.9 1.2 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Peptidase_M41 PF01434.13 gi|389846095|ref|YP_006348334.1| - 1.4 8.3 7.0 2.1 7.7 4.8 1.4 1 1 0 1 1 1 0 Peptidase family M41 ERp29 PF07749.7 gi|389846095|ref|YP_006348334.1| - 1.7 9.3 6.2 4.2 8.0 4.3 1.7 1 1 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain DUF2408 PF10303.4 gi|389846095|ref|YP_006348334.1| - 1.7 8.7 10.8 12 6.0 7.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) PilJ PF13675.1 gi|389846095|ref|YP_006348334.1| - 1.8 8.9 10.3 0.78 10.0 1.2 2.2 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term EzrA PF06160.7 gi|389846095|ref|YP_006348334.1| - 1.8 6.6 16.6 2.5 6.1 11.5 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA GCN5L1 PF06320.8 gi|389846095|ref|YP_006348334.1| - 1.9 8.3 9.1 7.7 6.3 0.7 2.0 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF87 PF01935.12 gi|389846095|ref|YP_006348334.1| - 2 8.1 5.3 2.8 7.6 3.7 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF87 SlyX PF04102.7 gi|389846095|ref|YP_006348334.1| - 2.2 8.7 12.2 0.85 10.0 2.7 2.3 2 0 0 2 2 2 0 SlyX Lebercilin PF15619.1 gi|389846095|ref|YP_006348334.1| - 2.3 7.5 17.9 18 4.7 12.5 1.9 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.6 gi|389846095|ref|YP_006348334.1| - 2.5 7.9 11.6 1.1 9.0 1.8 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|389846095|ref|YP_006348334.1| - 2.5 5.8 16.3 0.66 7.7 4.5 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|389846095|ref|YP_006348334.1| - 2.5 8.2 12.6 0.94 9.6 1.4 2.2 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.1 gi|389846095|ref|YP_006348334.1| - 3.2 8.2 15.5 0.82 10.1 2.5 2.2 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Tektin PF03148.9 gi|389846095|ref|YP_006348334.1| - 3.4 6.1 15.2 0.22 10.0 4.5 2.0 1 1 1 2 2 2 0 Tektin family YtxH PF12732.2 gi|389846095|ref|YP_006348334.1| - 3.7 7.9 14.3 1.5e+03 -0.4 9.9 2.2 1 1 0 1 1 1 0 YtxH-like protein RmuC PF02646.11 gi|389846095|ref|YP_006348334.1| - 3.9 6.2 11.8 0.38 9.5 1.7 2.0 1 1 0 2 2 2 0 RmuC family ERM PF00769.14 gi|389846095|ref|YP_006348334.1| - 4 6.8 23.5 23 4.4 16.3 1.8 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Baculo_PEP_C PF04513.7 gi|389846095|ref|YP_006348334.1| - 4 7.2 9.1 43 3.9 6.3 2.0 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|389846095|ref|YP_006348334.1| - 4.5 6.4 19.6 3.4 6.8 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Seryl_tRNA_N PF02403.17 gi|389846095|ref|YP_006348334.1| - 4.8 7.2 16.3 5.2 7.1 2.5 2.3 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AF0941-like PF14591.1 gi|389846095|ref|YP_006348334.1| - 4.9 7.2 14.4 24 5.0 4.3 2.5 1 1 0 1 1 1 0 AF0941-like Fzo_mitofusin PF04799.8 gi|389846095|ref|YP_006348334.1| - 4.9 6.5 12.0 5.3 6.3 2.6 2.1 1 1 1 2 2 2 0 fzo-like conserved region Spectrin PF00435.16 gi|389846095|ref|YP_006348334.1| - 4.9 7.4 15.5 15 5.9 9.3 2.3 1 1 0 1 1 1 0 Spectrin repeat DUF1759 PF03564.10 gi|389846095|ref|YP_006348334.1| - 5.1 6.9 7.9 11 5.8 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) TPR_MLP1_2 PF07926.7 gi|389846095|ref|YP_006348334.1| - 5.3 6.8 20.8 57 3.4 13.9 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.6 gi|389846095|ref|YP_006348334.1| - 5.3 7.5 14.1 1.7 9.0 2.0 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal HSP70 PF00012.15 gi|389846095|ref|YP_006348334.1| - 5.8 4.7 11.2 7.2 4.3 7.7 1.1 1 0 0 1 1 1 0 Hsp70 protein DUF16 PF01519.11 gi|389846095|ref|YP_006348334.1| - 6.1 7.1 12.2 5.6 7.2 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 CorA PF01544.13 gi|389846095|ref|YP_006348334.1| - 6.3 5.7 10.0 36 3.2 6.9 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4559 PF15112.1 gi|389846095|ref|YP_006348334.1| - 6.7 5.7 10.4 8.8 5.3 7.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) ACCA PF03255.9 gi|389846095|ref|YP_006348334.1| - 6.9 6.2 8.0 2.6 7.6 1.0 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Metal_resist PF13801.1 gi|389846095|ref|YP_006348334.1| - 7 6.6 6.8 3.1 7.8 0.5 2.3 2 1 0 2 2 2 0 Heavy-metal resistance TBPIP PF07106.8 gi|389846095|ref|YP_006348334.1| - 7.2 6.1 17.8 7.1 6.1 3.4 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GAS PF13851.1 gi|389846095|ref|YP_006348334.1| - 7.6 5.6 19.5 15 4.6 13.5 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Prominin PF05478.6 gi|389846095|ref|YP_006348334.1| - 7.8 3.8 9.8 21 2.4 6.8 1.6 1 1 0 1 1 1 0 Prominin Snapin_Pallidin PF14712.1 gi|389846095|ref|YP_006348334.1| - 8.8 6.7 14.9 1.1 9.6 2.3 2.4 2 1 0 2 2 2 0 Snapin/Pallidin YlqD PF11068.3 gi|389846095|ref|YP_006348334.1| - 9.2 6.3 18.4 1.5 8.8 5.2 2.1 1 1 1 2 2 2 0 YlqD protein Pcc1 PF09341.5 gi|389846096|ref|YP_006348335.1| - 2.2e-19 69.2 0.4 2.5e-19 69.1 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|389846097|ref|YP_006348336.1| - 1.3e-10 40.5 4.6 1.5e-10 40.3 3.2 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|389846097|ref|YP_006348336.1| - 0.00028 20.5 0.4 0.00028 20.5 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|389846097|ref|YP_006348336.1| - 0.00034 19.7 8.1 0.024 13.8 2.0 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DUF329 PF03884.9 gi|389846097|ref|YP_006348336.1| - 0.00069 19.1 0.7 0.32 10.5 0.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF329) A2L_zn_ribbon PF08792.5 gi|389846097|ref|YP_006348336.1| - 0.00096 18.5 0.3 0.44 10.0 0.0 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|389846097|ref|YP_006348336.1| - 0.0054 16.5 4.9 0.13 12.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF951 PF06107.6 gi|389846097|ref|YP_006348336.1| - 0.0076 15.7 0.2 1.5 8.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) zf-CHCC PF10276.4 gi|389846097|ref|YP_006348336.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|389846097|ref|YP_006348336.1| - 0.0099 15.3 4.0 0.095 12.2 2.8 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|389846097|ref|YP_006348336.1| - 0.011 15.4 0.8 0.042 13.6 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG Spt4 PF06093.8 gi|389846097|ref|YP_006348336.1| - 0.014 15.3 0.2 0.014 15.2 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|389846097|ref|YP_006348336.1| - 0.017 14.9 0.8 0.05 13.4 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|389846097|ref|YP_006348336.1| - 0.02 14.5 2.8 0.81 9.3 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-Di19 PF05605.7 gi|389846097|ref|YP_006348336.1| - 0.027 14.5 0.3 0.69 10.0 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|389846097|ref|YP_006348336.1| - 0.037 14.3 0.5 1.5 9.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|389846097|ref|YP_006348336.1| - 0.051 13.3 0.2 0.068 12.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|389846097|ref|YP_006348336.1| - 0.065 12.9 1.7 0.22 11.2 1.3 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-AN1 PF01428.11 gi|389846097|ref|YP_006348336.1| - 0.065 13.1 1.5 0.18 11.6 1.1 1.7 1 1 1 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|389846097|ref|YP_006348336.1| - 0.066 13.1 1.4 0.73 9.7 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Sgf11 PF08209.6 gi|389846097|ref|YP_006348336.1| - 0.069 12.4 3.6 1.2 8.5 0.3 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.13 gi|389846097|ref|YP_006348336.1| - 0.074 12.7 1.2 5 6.8 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|389846097|ref|YP_006348336.1| - 0.075 12.2 1.3 0.12 11.5 0.9 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|389846097|ref|YP_006348336.1| - 0.078 13.0 1.8 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|389846097|ref|YP_006348336.1| - 0.1 12.3 0.5 0.13 12.0 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.6 gi|389846097|ref|YP_006348336.1| - 0.12 12.0 2.2 0.16 11.6 1.5 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|389846097|ref|YP_006348336.1| - 0.12 11.7 4.2 0.45 9.8 3.1 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|389846097|ref|YP_006348336.1| - 0.12 12.6 1.7 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_4 PF13717.1 gi|389846097|ref|YP_006348336.1| - 0.19 11.4 5.9 9.6 5.9 4.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|389846097|ref|YP_006348336.1| - 0.21 11.2 5.8 10 5.7 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF3268 PF11672.3 gi|389846097|ref|YP_006348336.1| - 0.25 11.4 0.9 3.8 7.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) Zn-ribbon_8 PF09723.5 gi|389846097|ref|YP_006348336.1| - 0.44 10.5 5.2 5.2 7.0 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|389846097|ref|YP_006348336.1| - 0.58 10.2 2.7 1.1 9.3 1.9 1.5 1 1 0 1 1 1 0 zinc-finger zf-C2HC_2 PF13913.1 gi|389846097|ref|YP_006348336.1| - 1 9.1 5.0 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Mu-like_Com PF10122.4 gi|389846097|ref|YP_006348336.1| - 1.8 7.7 6.4 5.3 6.1 0.9 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|389846097|ref|YP_006348336.1| - 1.8 9.0 4.3 9.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|389846097|ref|YP_006348336.1| - 4.7 7.0 7.4 0.62 9.8 1.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.14 gi|389846098|ref|YP_006348337.1| - 2.1e-24 85.1 1.7 2.4e-24 85.0 1.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF2103 PF09876.4 gi|389846099|ref|YP_006348338.1| - 2.1e-44 149.4 0.2 3.6e-44 148.7 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) HlyD_2 PF12700.2 gi|389846099|ref|YP_006348338.1| - 0.092 11.8 0.1 0.17 11.0 0.1 1.4 1 0 0 1 1 1 0 HlyD family secretion protein zf-FPG_IleRS PF06827.9 gi|389846099|ref|YP_006348338.1| - 0.6 9.8 3.2 1.8 8.2 2.2 1.9 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|389846099|ref|YP_006348338.1| - 0.95 9.0 3.5 1.8 8.1 2.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TruD PF01142.13 gi|389846100|ref|YP_006348339.1| - 2.4e-90 302.9 0.0 2.8e-90 302.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|389846101|ref|YP_006348340.1| - 3.4e-42 142.7 0.1 3.8e-42 142.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.12 gi|389846102|ref|YP_006348341.1| - 1.8e-17 63.3 3.3 2.6e-17 62.8 2.3 1.2 1 0 0 1 1 1 1 Yip1 domain YndJ PF14158.1 gi|389846102|ref|YP_006348341.1| - 0.0097 15.0 1.2 0.0097 15.0 0.8 2.1 3 0 0 3 3 3 1 YndJ-like protein dUTPase PF00692.14 gi|389846103|ref|YP_006348342.1| - 6.4e-18 64.4 0.0 9.5e-18 63.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|389846103|ref|YP_006348342.1| - 6.5e-17 60.9 0.1 5.8e-12 44.6 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aldolase_2 PF10120.4 gi|389846104|ref|YP_006348343.1| - 1.4e-43 148.2 0.0 2.5e-43 147.3 0.0 1.4 1 1 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|389846104|ref|YP_006348343.1| - 7.9e-07 28.8 0.0 1.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|389846104|ref|YP_006348343.1| - 6.4e-05 23.0 0.3 0.00018 21.6 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|389846104|ref|YP_006348343.1| - 7e-05 22.5 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389846104|ref|YP_006348343.1| - 0.00012 21.6 0.0 0.0004 19.9 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_26 PF13443.1 gi|389846104|ref|YP_006348343.1| - 0.00014 21.9 0.0 0.00029 20.9 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|389846104|ref|YP_006348343.1| - 0.00015 21.3 0.0 0.00051 19.6 0.0 1.9 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|389846104|ref|YP_006348343.1| - 0.0003 20.0 0.6 0.0014 17.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|389846104|ref|YP_006348343.1| - 0.00075 19.5 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389846104|ref|YP_006348343.1| - 0.002 17.4 0.0 0.006 15.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|389846104|ref|YP_006348343.1| - 0.0025 17.3 0.0 0.0063 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain KorB PF08535.5 gi|389846104|ref|YP_006348343.1| - 0.01 15.9 0.1 0.12 12.5 0.0 2.6 2 1 0 2 2 2 0 KorB domain DUF3071 PF11268.3 gi|389846104|ref|YP_006348343.1| - 0.017 14.8 0.1 0.026 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) P22_Cro PF14549.1 gi|389846104|ref|YP_006348343.1| - 0.022 14.4 0.1 0.048 13.3 0.1 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro RepB PF07506.6 gi|389846104|ref|YP_006348343.1| - 0.031 14.1 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.7 gi|389846104|ref|YP_006348343.1| - 0.031 13.7 0.8 0.087 12.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|389846104|ref|YP_006348343.1| - 0.039 13.7 0.6 0.25 11.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|389846104|ref|YP_006348343.1| - 0.04 13.6 0.0 7.4 6.3 0.0 3.2 3 0 0 3 3 3 0 MarR family Cro PF09048.5 gi|389846104|ref|YP_006348343.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_1 PF00126.22 gi|389846104|ref|YP_006348343.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|389846104|ref|YP_006348343.1| - 0.06 13.0 0.0 0.19 11.4 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|389846104|ref|YP_006348343.1| - 0.12 12.4 0.0 0.46 10.5 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|389846104|ref|YP_006348343.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Methyltransf_11 PF08241.7 gi|662859359|ref|YP_006348344.2| - 3.6e-16 59.4 0.0 7.2e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|662859359|ref|YP_006348344.2| - 2.1e-15 57.2 0.0 5e-15 56.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|662859359|ref|YP_006348344.2| - 3.5e-15 55.9 0.0 4.6e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|662859359|ref|YP_006348344.2| - 2.9e-13 50.1 0.0 4.8e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|662859359|ref|YP_006348344.2| - 6.9e-13 48.6 0.0 8.8e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|662859359|ref|YP_006348344.2| - 2.1e-11 43.3 0.0 2.7e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|662859359|ref|YP_006348344.2| - 1.2e-10 41.4 0.3 1.2e-10 41.4 0.2 2.0 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|662859359|ref|YP_006348344.2| - 3.3e-09 37.0 0.0 7.2e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|662859359|ref|YP_006348344.2| - 5.8e-09 35.7 0.0 8.9e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|662859359|ref|YP_006348344.2| - 1.6e-06 28.2 0.0 1.3e-05 25.2 0.0 2.0 1 1 0 2 2 2 1 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|662859359|ref|YP_006348344.2| - 1.3e-05 24.3 0.0 4.1e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.12 gi|662859359|ref|YP_006348344.2| - 2.9e-05 23.1 0.0 4.5e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Fibrillarin Methyltransf_4 PF02390.12 gi|662859359|ref|YP_006348344.2| - 6.8e-05 22.0 0.0 9.5e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_19 PF04672.7 gi|662859359|ref|YP_006348344.2| - 0.00021 20.6 0.0 0.0014 17.9 0.0 2.0 1 1 0 1 1 1 1 S-adenosyl methyltransferase CMAS PF02353.15 gi|662859359|ref|YP_006348344.2| - 0.00036 19.6 0.0 0.00057 19.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|662859359|ref|YP_006348344.2| - 0.00056 19.4 0.2 0.0012 18.4 0.0 1.6 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|662859359|ref|YP_006348344.2| - 0.0055 16.1 0.0 0.009 15.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Corona_nucleoca PF00937.13 gi|662859359|ref|YP_006348344.2| - 0.0077 15.2 10.1 0.0099 14.8 7.0 1.1 1 0 0 1 1 1 1 Coronavirus nucleocapsid protein TPMT PF05724.6 gi|662859359|ref|YP_006348344.2| - 0.0099 15.3 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.1 gi|662859359|ref|YP_006348344.2| - 0.042 13.5 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Thi4 PF01946.12 gi|389846106|ref|YP_006348345.1| - 2.8e-60 203.2 0.4 3e-57 193.3 0.1 2.4 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|389846106|ref|YP_006348345.1| - 1.9e-11 43.7 0.1 2.7e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389846106|ref|YP_006348345.1| - 3.7e-11 42.5 1.1 5.2e-08 32.1 0.6 2.2 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|389846106|ref|YP_006348345.1| - 8.3e-11 41.3 3.1 8.1e-08 31.5 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|389846106|ref|YP_006348345.1| - 2.4e-10 39.9 0.1 5.9e-10 38.7 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|389846106|ref|YP_006348345.1| - 2.6e-10 40.1 0.2 6.7e-10 38.8 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|389846106|ref|YP_006348345.1| - 9e-08 30.9 0.2 1.3e-07 30.4 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|389846106|ref|YP_006348345.1| - 4.2e-07 30.0 0.1 6.2e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846106|ref|YP_006348345.1| - 3.1e-06 27.4 0.4 9.5e-06 25.9 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|389846106|ref|YP_006348345.1| - 2.1e-05 23.3 0.5 0.0026 16.4 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|389846106|ref|YP_006348345.1| - 2.6e-05 24.0 0.2 5.7e-05 22.9 0.2 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|389846106|ref|YP_006348345.1| - 4.8e-05 22.6 0.0 9e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.1 gi|389846106|ref|YP_006348345.1| - 0.00012 22.2 0.3 0.00022 21.3 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|389846106|ref|YP_006348345.1| - 0.00054 18.9 0.3 0.0035 16.3 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|389846106|ref|YP_006348345.1| - 0.0006 18.7 0.2 0.00092 18.1 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|389846106|ref|YP_006348345.1| - 0.0047 17.1 0.0 0.008 16.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|389846106|ref|YP_006348345.1| - 0.016 15.2 0.6 0.036 14.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain YjeF_N PF03853.10 gi|389846106|ref|YP_006348345.1| - 0.086 12.4 0.4 0.53 9.8 0.0 2.3 3 0 0 3 3 3 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.9 gi|389846106|ref|YP_006348345.1| - 0.13 11.6 0.1 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GST_N_2 PF13409.1 gi|389846107|ref|YP_006348346.1| - 1.4e-23 82.6 0.0 2.5e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|389846107|ref|YP_006348346.1| - 6.6e-12 45.1 0.1 1.7e-11 43.8 0.1 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|389846107|ref|YP_006348346.1| - 3.1e-07 30.2 0.2 3.9e-06 26.7 0.1 2.2 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|389846107|ref|YP_006348346.1| - 6e-07 29.8 0.1 1.3e-06 28.8 0.1 1.7 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|389846107|ref|YP_006348346.1| - 1.1e-06 28.7 0.0 5.2e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain PhoU PF01895.14 gi|389846107|ref|YP_006348346.1| - 0.14 12.5 0.1 0.33 11.4 0.1 1.6 1 0 0 1 1 1 0 PhoU domain Oxidored_molyb PF00174.14 gi|389846108|ref|YP_006348347.1| - 9e-33 113.0 0.1 1.3e-32 112.5 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain SepZ PF06066.6 gi|389846108|ref|YP_006348347.1| - 0.12 12.3 0.2 0.31 11.0 0.2 1.6 1 0 0 1 1 1 0 SepZ DUF4405 PF14358.1 gi|389846108|ref|YP_006348347.1| - 9.7 6.4 20.6 4 7.6 6.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF137 PF02006.11 gi|389846109|ref|YP_006348348.1| - 1.3e-73 246.1 3.7 1.6e-73 245.8 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|389846109|ref|YP_006348348.1| - 0.0076 15.4 0.1 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) TetR PF13972.1 gi|389846109|ref|YP_006348348.1| - 0.13 11.7 0.0 0.58 9.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial transcriptional repressor GHMP_kinases_N PF00288.21 gi|389846110|ref|YP_006348349.1| - 8.4e-10 38.5 1.7 8.4e-10 38.5 1.2 2.3 2 1 0 2 2 2 1 GHMP kinases N terminal domain SHOCT PF09851.4 gi|389846111|ref|YP_006348350.1| - 7.9e-10 37.8 4.7 7.9e-10 37.8 3.2 2.0 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.6 gi|389846111|ref|YP_006348350.1| - 6e-06 25.9 3.2 1.2e-05 24.9 2.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) UPF0104 PF03706.8 gi|389846111|ref|YP_006348350.1| - 0.00017 20.9 0.0 0.0002 20.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) GvpG PF05120.7 gi|389846111|ref|YP_006348350.1| - 0.012 15.3 3.6 0.018 14.8 2.5 1.4 1 0 0 1 1 1 0 Gas vesicle protein G DUF2244 PF10003.4 gi|389846111|ref|YP_006348350.1| - 0.031 13.6 1.4 0.047 13.0 0.9 1.3 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) tRNA-synt_2 PF00152.15 gi|662859360|ref|YP_006348351.2| - 5e-89 298.3 0.3 6.3e-89 298.0 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|662859360|ref|YP_006348351.2| - 1.7e-13 50.2 0.1 3e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|662859360|ref|YP_006348351.2| - 0.0078 15.4 0.1 0.1 11.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) DUF4013 PF13197.1 gi|389846113|ref|YP_006348352.1| - 1.7e-14 53.4 17.3 1.7e-14 53.4 12.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) ATP1G1_PLM_MAT8 PF02038.11 gi|389846113|ref|YP_006348352.1| - 3.8 6.6 5.1 2.2 7.3 1.2 2.4 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family PcrB PF01884.12 gi|389846114|ref|YP_006348353.1| - 8.1e-53 179.0 0.2 9.4e-53 178.8 0.1 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|389846114|ref|YP_006348353.1| - 0.13 10.7 0.2 0.48 8.9 0.0 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Mrr_cat PF04471.7 gi|389846115|ref|YP_006348354.1| - 6.7e-20 71.0 0.0 1.1e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Topoisom_bac PF01131.15 gi|389846116|ref|YP_006348355.1| - 1.4e-113 379.8 0.0 2.2e-113 379.1 0.0 1.4 2 0 0 2 2 2 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|389846116|ref|YP_006348355.1| - 5.8e-21 73.7 0.9 2.5e-15 55.6 0.4 4.0 5 0 0 5 5 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|389846116|ref|YP_006348355.1| - 3.2e-17 62.3 0.0 6.7e-17 61.3 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|389846116|ref|YP_006348355.1| - 2.7e-10 40.2 5.7 1.2e-09 38.1 1.2 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|389846116|ref|YP_006348355.1| - 0.00027 20.8 0.0 0.00076 19.3 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|389846116|ref|YP_006348355.1| - 0.00051 19.5 0.4 0.011 15.3 0.0 3.0 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|389846116|ref|YP_006348355.1| - 0.0047 16.5 0.1 0.016 14.8 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif TfoX_C PF04994.8 gi|389846116|ref|YP_006348355.1| - 0.0076 16.1 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 TfoX C-terminal domain IMS_HHH PF11798.3 gi|389846116|ref|YP_006348355.1| - 0.015 15.3 0.1 0.053 13.5 0.0 2.0 2 0 0 2 2 1 0 IMS family HHH motif DUF4332 PF14229.1 gi|389846116|ref|YP_006348355.1| - 0.023 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_8 PF14716.1 gi|389846116|ref|YP_006348355.1| - 0.052 13.7 0.2 1.1 9.4 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain HEXIM PF15313.1 gi|389846116|ref|YP_006348355.1| - 0.061 13.4 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein RgpF PF05045.7 gi|389846116|ref|YP_006348355.1| - 0.24 9.8 0.0 0.33 9.4 0.0 1.1 1 0 0 1 1 1 0 Rhamnan synthesis protein F Zn-ribbon_8 PF09723.5 gi|389846116|ref|YP_006348355.1| - 0.77 9.7 3.6 6.8 6.7 0.0 3.2 3 0 0 3 3 3 0 Zinc ribbon domain DUF1272 PF06906.6 gi|389846116|ref|YP_006348355.1| - 1.1 9.1 5.3 0.5 10.2 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) zf-IS66 PF13005.2 gi|389846116|ref|YP_006348355.1| - 1.3 9.0 4.8 3.6 7.6 0.1 3.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DnaJ_CXXCXGXG PF00684.14 gi|389846116|ref|YP_006348355.1| - 1.4 9.0 5.4 9.2 6.3 0.1 2.5 2 0 0 2 2 2 0 DnaJ central domain zf-RING_3 PF14369.1 gi|389846116|ref|YP_006348355.1| - 1.6 8.8 8.4 9 6.3 0.0 3.5 3 1 0 3 3 3 0 zinc-finger Ogr_Delta PF04606.7 gi|389846116|ref|YP_006348355.1| - 8.8 6.0 8.9 1.5 8.5 0.2 2.9 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger MatE PF01554.13 gi|389846117|ref|YP_006348356.1| - 5.5e-64 214.6 32.2 3.2e-38 130.8 7.5 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|389846117|ref|YP_006348356.1| - 3.6e-11 43.0 6.7 3.6e-11 43.0 4.6 4.7 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain GatB_N PF02934.10 gi|389846118|ref|YP_006348357.1| - 2.3e-113 377.8 0.0 3.2e-113 377.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|389846118|ref|YP_006348357.1| - 4.1e-41 140.1 0.0 7.3e-41 139.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain Tropomyosin PF00261.15 gi|662859361|ref|YP_006348358.2| - 0.0033 16.5 1.4 0.0033 16.5 1.0 1.6 2 0 0 2 2 2 1 Tropomyosin SlyX PF04102.7 gi|662859361|ref|YP_006348358.2| - 0.0084 16.4 1.9 0.013 15.9 1.3 1.5 1 1 0 1 1 1 1 SlyX FlaC_arch PF05377.6 gi|662859361|ref|YP_006348358.2| - 0.015 15.2 1.2 0.024 14.5 0.8 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Snapin_Pallidin PF14712.1 gi|662859361|ref|YP_006348358.2| - 0.025 14.9 0.1 0.032 14.5 0.1 1.2 1 0 0 1 1 1 0 Snapin/Pallidin TMF_DNA_bd PF12329.3 gi|662859361|ref|YP_006348358.2| - 0.03 14.1 2.1 0.058 13.2 1.5 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding bZIP_1 PF00170.16 gi|662859361|ref|YP_006348358.2| - 0.043 13.7 1.6 0.062 13.2 1.1 1.2 1 0 0 1 1 1 0 bZIP transcription factor NPV_P10 PF05531.7 gi|662859361|ref|YP_006348358.2| - 0.046 13.9 0.4 0.075 13.2 0.3 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein SYCE1 PF15233.1 gi|662859361|ref|YP_006348358.2| - 0.052 13.4 0.5 0.082 12.8 0.4 1.3 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 TBPIP PF07106.8 gi|662859361|ref|YP_006348358.2| - 0.17 11.4 0.2 0.17 11.4 0.1 1.6 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AATF-Che1 PF13339.1 gi|662859361|ref|YP_006348358.2| - 0.18 11.9 1.4 0.21 11.7 1.0 1.2 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor Striatin PF08232.7 gi|662859361|ref|YP_006348358.2| - 0.26 11.5 2.9 0.35 11.1 2.0 1.1 1 0 0 1 1 1 0 Striatin family Spc24 PF08286.6 gi|662859361|ref|YP_006348358.2| - 2 8.1 10.0 14 5.3 6.9 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 SURF2 PF05477.6 gi|662859361|ref|YP_006348358.2| - 2 7.4 6.8 2.7 7.0 4.7 1.3 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) Cwf_Cwc_15 PF04889.7 gi|662859361|ref|YP_006348358.2| - 3.3 7.3 11.4 3.8 7.1 7.9 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein SMC_N PF02463.14 gi|389846120|ref|YP_006348359.1| - 8.1e-57 191.9 21.7 2.5e-56 190.3 15.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|389846120|ref|YP_006348359.1| - 4.8e-28 97.5 0.0 1.9e-27 95.5 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|389846120|ref|YP_006348359.1| - 2.3e-18 66.0 87.7 9.7e-07 27.6 6.8 6.1 3 2 3 6 6 6 5 AAA domain AAA_21 PF13304.1 gi|389846120|ref|YP_006348359.1| - 1.4e-14 54.7 13.6 7.2e-08 32.7 0.0 4.3 4 0 0 4 4 4 2 AAA domain IncA PF04156.9 gi|389846120|ref|YP_006348359.1| - 9.5e-12 44.9 129.8 8.7e-05 22.1 7.3 8.2 2 2 6 8 8 8 4 IncA protein Reo_sigmaC PF04582.7 gi|389846120|ref|YP_006348359.1| - 2.1e-10 40.2 33.1 3.9e-05 23.0 2.4 5.7 2 2 4 6 6 6 5 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|389846120|ref|YP_006348359.1| - 1.3e-06 27.3 105.4 0.016 13.8 10.3 6.9 2 2 5 7 7 7 5 Spc7 kinetochore protein AAA_15 PF13175.1 gi|389846120|ref|YP_006348359.1| - 2e-06 27.1 3.0 0.0001 21.5 0.0 3.6 3 1 0 3 3 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|389846120|ref|YP_006348359.1| - 2.4e-06 28.0 101.5 0.00024 21.4 29.5 7.1 2 2 0 2 2 1 1 AAA domain ATG16 PF08614.6 gi|389846120|ref|YP_006348359.1| - 7e-06 26.0 112.6 0.0057 16.5 5.4 8.4 2 2 6 8 8 8 5 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.4 gi|389846120|ref|YP_006348359.1| - 2.4e-05 24.1 128.4 0.016 15.0 13.0 7.4 2 2 6 8 8 8 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.1 gi|389846120|ref|YP_006348359.1| - 4.5e-05 22.8 0.0 0.00012 21.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4200 PF13863.1 gi|389846120|ref|YP_006348359.1| - 6.7e-05 22.8 126.1 0.00034 20.5 4.9 10.6 3 2 6 10 10 10 4 Domain of unknown function (DUF4200) MscS_porin PF12795.2 gi|389846120|ref|YP_006348359.1| - 7.3e-05 22.2 86.8 0.011 15.0 2.2 6.8 3 2 4 7 7 7 3 Mechanosensitive ion channel porin domain APG6 PF04111.7 gi|389846120|ref|YP_006348359.1| - 0.00011 21.3 120.1 0.0064 15.5 10.4 7.2 2 2 5 7 7 7 4 Autophagy protein Apg6 Myosin_tail_1 PF01576.14 gi|389846120|ref|YP_006348359.1| - 0.00015 19.7 143.3 0.0021 15.8 44.7 3.2 2 1 0 2 2 2 2 Myosin tail Mnd1 PF03962.10 gi|389846120|ref|YP_006348359.1| - 0.00016 21.3 99.7 0.0034 17.0 8.5 8.4 2 2 5 7 7 6 4 Mnd1 family Baculo_PEP_C PF04513.7 gi|389846120|ref|YP_006348359.1| - 0.00018 21.3 31.5 0.18 11.6 1.2 7.2 4 2 3 7 7 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|389846120|ref|YP_006348359.1| - 0.00028 20.4 106.4 0.0093 15.4 24.6 6.2 2 2 4 6 6 5 4 Intermediate filament protein Laminin_II PF06009.7 gi|389846120|ref|YP_006348359.1| - 0.00042 20.0 16.7 0.00087 19.0 3.1 8.3 3 2 6 10 10 10 4 Laminin Domain II FliJ PF02050.11 gi|389846120|ref|YP_006348359.1| - 0.00043 20.3 71.0 0.0023 17.9 2.5 8.4 2 2 7 10 10 10 4 Flagellar FliJ protein Tropomyosin PF00261.15 gi|389846120|ref|YP_006348359.1| - 0.00044 19.4 51.9 0.00044 19.4 35.9 6.1 2 2 3 5 5 3 2 Tropomyosin IFT57 PF10498.4 gi|389846120|ref|YP_006348359.1| - 0.00051 18.8 8.2 0.00051 18.8 5.7 5.4 2 2 2 4 4 4 1 Intra-flagellar transport protein 57 DUF4201 PF13870.1 gi|389846120|ref|YP_006348359.1| - 0.00064 19.2 8.8 0.00064 19.2 6.1 8.2 2 2 2 6 6 5 2 Domain of unknown function (DUF4201) DUF812 PF05667.6 gi|389846120|ref|YP_006348359.1| - 0.001 17.6 27.9 0.001 17.6 19.4 5.4 2 2 2 4 4 4 1 Protein of unknown function (DUF812) CCDC155 PF14662.1 gi|389846120|ref|YP_006348359.1| - 0.001 18.6 15.8 0.001 18.6 11.0 6.2 2 2 4 6 6 5 1 Coiled-coil region of CCDC155 Tropomyosin_1 PF12718.2 gi|389846120|ref|YP_006348359.1| - 0.0011 18.7 17.5 0.0011 18.7 12.1 8.1 2 2 4 7 7 6 2 Tropomyosin like MAD PF05557.8 gi|389846120|ref|YP_006348359.1| - 0.0012 17.0 16.9 0.0012 17.0 11.7 5.0 2 2 2 4 4 4 1 Mitotic checkpoint protein Lebercilin PF15619.1 gi|389846120|ref|YP_006348359.1| - 0.0013 18.1 11.6 0.0013 18.1 8.0 6.8 3 2 4 7 7 4 2 Ciliary protein causing Leber congenital amaurosis disease WEMBL PF05701.6 gi|389846120|ref|YP_006348359.1| - 0.0021 16.6 119.2 0.01 14.3 24.1 5.6 2 2 3 5 5 5 2 Weak chloroplast movement under blue light DUF3584 PF12128.3 gi|389846120|ref|YP_006348359.1| - 0.003 14.9 111.6 0.0034 14.8 24.6 4.4 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) Fib_alpha PF08702.5 gi|389846120|ref|YP_006348359.1| - 0.003 17.6 3.4 0.003 17.6 2.3 7.0 3 2 3 7 7 7 2 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|389846120|ref|YP_006348359.1| - 0.004 16.9 2.9 0.004 16.9 2.0 8.7 3 2 5 9 9 8 3 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|389846120|ref|YP_006348359.1| - 0.0068 16.6 5.1 0.0068 16.6 3.5 11.7 6 3 3 10 10 9 1 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|389846120|ref|YP_006348359.1| - 0.0073 16.3 107.3 0.094 12.7 3.9 11.4 3 3 8 11 11 11 3 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|389846120|ref|YP_006348359.1| - 0.0075 15.2 89.7 0.014 14.3 1.5 6.4 3 2 3 6 6 6 2 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|389846120|ref|YP_006348359.1| - 0.0093 15.1 98.1 0.18 10.9 10.3 7.4 2 2 5 7 7 7 4 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|389846120|ref|YP_006348359.1| - 0.011 15.8 0.4 0.011 15.8 0.3 10.0 5 2 5 11 11 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Rab5-bind PF09311.6 gi|389846120|ref|YP_006348359.1| - 0.011 15.6 1.9 0.011 15.6 1.3 7.1 2 2 4 7 7 4 0 Rabaptin-like protein TPR_MLP1_2 PF07926.7 gi|389846120|ref|YP_006348359.1| - 0.016 14.9 105.7 0.0089 15.7 8.8 7.7 3 2 3 7 7 7 0 TPR/MLP1/MLP2-like protein Sec34 PF04136.10 gi|389846120|ref|YP_006348359.1| - 0.024 14.3 0.6 0.024 14.3 0.4 7.3 4 2 4 9 9 9 0 Sec34-like family DUF869 PF05911.6 gi|389846120|ref|YP_006348359.1| - 0.043 12.0 92.9 0.17 10.1 7.6 5.2 2 2 1 4 4 4 0 Plant protein of unknown function (DUF869) ADIP PF11559.3 gi|389846120|ref|YP_006348359.1| - 0.052 13.4 88.9 0.064 13.1 3.0 9.4 3 2 8 11 11 11 0 Afadin- and alpha -actinin-Binding TMF_TATA_bd PF12325.3 gi|389846120|ref|YP_006348359.1| - 0.061 13.0 119.6 0.093 12.4 10.9 8.6 3 2 4 8 8 8 0 TATA element modulatory factor 1 TATA binding FliD_N PF02465.13 gi|389846120|ref|YP_006348359.1| - 0.068 13.5 27.3 6.1 7.2 0.1 8.5 3 2 4 8 8 8 0 Flagellar hook-associated protein 2 N-terminus EzrA PF06160.7 gi|389846120|ref|YP_006348359.1| - 0.076 11.1 93.6 0.0044 15.2 5.6 6.0 2 2 2 4 4 3 0 Septation ring formation regulator, EzrA AAA_27 PF13514.1 gi|389846120|ref|YP_006348359.1| - 0.3 8.7 121.3 0.083 10.5 12.6 5.0 3 2 3 6 6 6 0 AAA domain TBPIP PF07106.8 gi|389846120|ref|YP_006348359.1| - 0.36 10.3 97.2 0.062 12.8 6.5 9.0 2 2 7 10 10 10 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_I PF06008.9 gi|389846120|ref|YP_006348359.1| - 0.37 10.0 84.4 0.14 11.4 20.2 7.4 2 2 4 6 6 6 0 Laminin Domain I RmuC PF02646.11 gi|389846120|ref|YP_006348359.1| - 1.2 7.9 49.7 0.14 10.9 0.4 9.0 4 2 5 9 9 9 0 RmuC family IL6 PF00489.12 gi|389846120|ref|YP_006348359.1| - 1.7 8.2 4.7 0.89 9.1 0.1 2.9 3 0 0 3 3 2 0 Interleukin-6/G-CSF/MGF family DUF745 PF05335.8 gi|389846120|ref|YP_006348359.1| - 9.1 5.7 56.3 0.67 9.4 3.8 6.0 2 2 2 5 5 5 0 Protein of unknown function (DUF745) ScpA_ScpB PF02616.9 gi|389846121|ref|YP_006348360.1| - 6.2e-23 81.6 0.1 6.9e-16 58.5 0.0 2.5 2 1 0 2 2 2 2 ScpA/B protein Cytochrome_C7 PF14522.1 gi|389846122|ref|YP_006348361.1| - 0.23 11.0 2.5 0.48 10.0 0.4 1.8 1 1 1 2 2 2 0 Cytochrome c7 PNP_UDP_1 PF01048.15 gi|389846123|ref|YP_006348362.1| - 1.6e-42 145.0 0.0 1.9e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Extensin-like_C PF06904.7 gi|389846123|ref|YP_006348362.1| - 0.032 13.9 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Extensin-like protein C-terminus Mem_trans PF03547.13 gi|662859362|ref|YP_006348363.2| - 4.9e-28 97.5 23.2 3.6e-14 51.8 1.6 2.0 1 1 1 2 2 2 2 Membrane transport protein Pribosyltran PF00156.22 gi|389846125|ref|YP_006348364.1| - 5.5e-19 68.1 0.0 7.8e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|389846125|ref|YP_006348364.1| - 0.018 14.2 0.0 0.024 13.8 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase zf-ribbon_3 PF13248.1 gi|389846126|ref|YP_006348365.1| - 0.036 13.2 2.4 0.26 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|389846126|ref|YP_006348365.1| - 0.063 13.0 0.4 0.13 12.1 0.3 1.5 1 1 0 1 1 1 0 RNHCP domain DZR PF12773.2 gi|389846126|ref|YP_006348365.1| - 0.087 12.6 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.4 gi|389846126|ref|YP_006348365.1| - 0.19 11.6 0.9 1.3 8.9 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain PhzC-PhzF PF02567.11 gi|389846127|ref|YP_006348366.1| - 5.2e-64 216.1 0.2 6.1e-64 215.9 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|389846127|ref|YP_006348366.1| - 1.2e-05 25.2 0.0 0.0065 16.3 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase PAC2 PF09754.4 gi|389846128|ref|YP_006348367.1| - 6.1e-51 173.3 0.4 7.1e-51 173.1 0.2 1.0 1 0 0 1 1 1 1 PAC2 family DUF2204 PF09970.4 gi|389846128|ref|YP_006348367.1| - 0.066 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Nop10p PF04135.7 gi|389846129|ref|YP_006348368.1| - 2.7e-22 78.2 1.9 3e-22 78.1 1.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|389846129|ref|YP_006348368.1| - 0.071 12.3 1.3 0.097 11.9 0.6 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|389846129|ref|YP_006348368.1| - 0.14 11.8 0.3 0.14 11.8 0.2 1.7 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|389846129|ref|YP_006348368.1| - 0.19 11.4 1.6 0.34 10.6 1.1 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|389846129|ref|YP_006348368.1| - 0.8 9.4 4.4 5.5 6.8 3.1 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 EIF_2_alpha PF07541.7 gi|389846130|ref|YP_006348369.1| - 1.8e-28 98.5 0.0 3.5e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|389846130|ref|YP_006348369.1| - 4.3e-14 52.3 1.9 4.6e-14 52.2 0.4 1.8 2 0 0 2 2 2 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|389846131|ref|YP_006348370.1| - 1.8e-18 65.8 0.6 2e-18 65.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|389846131|ref|YP_006348370.1| - 0.0016 17.5 1.4 0.0025 16.9 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|389846131|ref|YP_006348370.1| - 0.018 14.9 0.8 0.032 14.1 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-CHY PF05495.7 gi|389846131|ref|YP_006348370.1| - 0.063 13.4 0.7 0.088 12.9 0.5 1.2 1 0 0 1 1 1 0 CHY zinc finger DUF2318 PF10080.4 gi|389846131|ref|YP_006348370.1| - 0.07 12.9 0.4 0.085 12.6 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.5 gi|389846131|ref|YP_006348370.1| - 0.079 12.4 2.4 0.14 11.6 1.7 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|389846131|ref|YP_006348370.1| - 0.099 12.1 0.2 0.11 11.9 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L44 PF00935.14 gi|389846132|ref|YP_006348371.1| - 3.8e-25 87.6 1.9 5.5e-25 87.1 1.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.1 gi|389846132|ref|YP_006348371.1| - 0.022 13.9 1.0 3.5 6.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|389846132|ref|YP_006348371.1| - 0.034 13.4 1.6 5.5 6.4 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|389846132|ref|YP_006348371.1| - 0.036 14.3 0.3 0.11 12.8 0.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2296 PF10058.4 gi|389846132|ref|YP_006348371.1| - 0.043 13.5 0.9 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF1272 PF06906.6 gi|389846132|ref|YP_006348371.1| - 0.067 13.0 0.5 1.2 9.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Terminase_GpA PF05876.7 gi|389846132|ref|YP_006348371.1| - 0.081 11.2 0.4 0.1 10.9 0.3 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DZR PF12773.2 gi|389846132|ref|YP_006348371.1| - 0.083 12.7 2.8 0.58 10.0 1.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|389846132|ref|YP_006348371.1| - 0.16 11.6 3.0 3 7.5 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|389846132|ref|YP_006348371.1| - 0.18 11.7 1.8 15 5.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|389846132|ref|YP_006348371.1| - 0.32 10.5 4.5 2.9 7.4 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.19 gi|389846132|ref|YP_006348371.1| - 0.84 9.5 6.4 7.1 6.6 0.1 2.2 2 0 0 2 2 2 0 B-box zinc finger DUF2298 PF10060.4 gi|389846134|ref|YP_006348373.1| - 1.4e-118 396.8 22.5 1.8e-118 396.3 15.6 1.2 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.21 gi|662859363|ref|YP_006348374.2| - 6.3e-07 29.2 0.4 1.6e-06 27.9 0.1 1.9 2 1 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|389846136|ref|YP_006348375.1| - 1.5e-18 66.8 2.3 2.1e-18 66.3 1.6 1.2 1 0 0 1 1 1 1 GtrA-like protein Polysacc_synt_C PF14667.1 gi|389846136|ref|YP_006348375.1| - 1.8 8.3 8.1 5.3 6.8 5.1 2.0 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Rieske PF00355.21 gi|389846137|ref|YP_006348376.1| - 1.4e-07 31.0 0.1 2e-07 30.4 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aminotran_4 PF01063.14 gi|389846138|ref|YP_006348377.1| - 6.6e-51 173.0 0.0 8.3e-51 172.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Lsm_C PF14894.1 gi|389846138|ref|YP_006348377.1| - 0.15 11.5 0.0 0.33 10.4 0.0 1.6 1 1 0 1 1 1 0 Lsm C-terminal GATase PF00117.23 gi|389846139|ref|YP_006348378.1| - 1.4e-46 158.3 0.0 1.5e-33 115.8 0.0 2.0 1 1 0 2 2 2 2 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|389846139|ref|YP_006348378.1| - 1.6e-05 24.4 0.1 4.8e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|389846141|ref|YP_006348380.1| - 8.2e-99 330.0 0.0 1.1e-98 329.6 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|389846141|ref|YP_006348380.1| - 2.3e-15 56.8 0.0 7.4e-15 55.1 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.1 gi|389846142|ref|YP_006348381.1| - 5e-08 33.0 0.1 5e-08 33.0 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|389846142|ref|YP_006348381.1| - 0.00024 20.9 0.0 0.00047 20.0 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.1 gi|389846142|ref|YP_006348381.1| - 0.005 16.7 0.0 0.036 14.0 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|389846142|ref|YP_006348381.1| - 0.0057 16.1 0.0 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Mitofilin PF09731.4 gi|389846142|ref|YP_006348381.1| - 0.0074 14.9 29.9 0.009 14.7 20.8 1.1 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Adenylsucc_synt PF00709.16 gi|389846142|ref|YP_006348381.1| - 0.088 11.4 1.1 0.3 9.6 0.0 2.0 2 0 0 2 2 2 0 Adenylosuccinate synthetase TfoX_C PF04994.8 gi|389846142|ref|YP_006348381.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 TfoX C-terminal domain Shikimate_dh_N PF08501.6 gi|389846143|ref|YP_006348382.1| - 2e-27 95.0 0.0 4.3e-27 93.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|389846143|ref|YP_006348382.1| - 2.3e-11 43.9 0.0 3.2e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|389846143|ref|YP_006348382.1| - 5.3e-05 22.3 0.1 7.6e-05 21.8 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FAD_binding_2 PF00890.19 gi|389846143|ref|YP_006348382.1| - 0.001 18.0 6.6 0.0015 17.4 4.6 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|389846143|ref|YP_006348382.1| - 0.0058 16.5 1.5 0.0085 15.9 1.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|389846143|ref|YP_006348382.1| - 0.0096 15.2 0.2 0.015 14.6 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|389846143|ref|YP_006348382.1| - 0.016 14.0 6.3 0.022 13.6 4.4 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|389846143|ref|YP_006348382.1| - 0.017 14.1 1.1 0.024 13.7 0.8 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.1 gi|389846143|ref|YP_006348382.1| - 0.027 14.4 2.8 0.058 13.4 2.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|389846143|ref|YP_006348382.1| - 0.028 14.4 0.2 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|389846143|ref|YP_006348382.1| - 0.029 13.8 1.2 0.054 12.9 0.8 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|389846143|ref|YP_006348382.1| - 0.029 14.1 0.8 0.05 13.4 0.6 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|389846143|ref|YP_006348382.1| - 0.049 13.8 0.1 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|389846143|ref|YP_006348382.1| - 0.074 12.1 0.6 0.12 11.4 0.4 1.3 1 0 0 1 1 1 0 Thi4 family F420_oxidored PF03807.12 gi|389846143|ref|YP_006348382.1| - 0.083 13.3 1.5 0.15 12.5 1.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|389846143|ref|YP_006348382.1| - 0.086 11.9 0.1 0.14 11.2 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|389846143|ref|YP_006348382.1| - 0.1 12.2 1.7 0.15 11.7 1.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|389846143|ref|YP_006348382.1| - 0.15 12.0 3.7 0.15 12.0 1.9 1.6 2 0 0 2 2 1 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|389846143|ref|YP_006348382.1| - 0.21 11.2 1.2 0.37 10.4 0.8 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|389846143|ref|YP_006348382.1| - 0.26 11.1 1.9 0.63 9.8 1.3 1.6 1 0 0 1 1 1 0 ThiF family HI0933_like PF03486.9 gi|389846143|ref|YP_006348382.1| - 3 6.2 5.4 3.9 5.8 3.7 1.2 1 0 0 1 1 1 0 HI0933-like protein Na_Ca_ex PF01699.19 gi|389846144|ref|YP_006348383.1| - 1.2e-43 148.0 34.3 1.4e-22 79.7 8.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Arteri_Gl PF00951.13 gi|389846144|ref|YP_006348383.1| - 1.2 8.6 5.3 4.6 6.8 0.1 2.8 2 2 0 2 2 2 0 Arterivirus GL envelope glycoprotein Na_Ca_ex PF01699.19 gi|389846145|ref|YP_006348384.1| - 6.5e-12 45.2 23.7 1.2e-06 28.2 4.2 2.7 3 0 0 3 3 3 2 Sodium/calcium exchanger protein FA_desaturase PF00487.19 gi|389846145|ref|YP_006348384.1| - 0.01 15.2 0.3 0.01 15.2 0.2 3.2 3 0 0 3 3 3 0 Fatty acid desaturase tRNA_deacylase PF04414.7 gi|389846146|ref|YP_006348385.1| - 3.2e-63 212.6 0.0 4.4e-63 212.2 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase zf-CCHC PF00098.18 gi|389846146|ref|YP_006348385.1| - 0.029 14.2 0.2 0.029 14.2 0.1 2.4 3 0 0 3 3 3 0 Zinc knuckle FtsZ_C PF12327.3 gi|389846147|ref|YP_006348386.1| - 5.9e-38 128.8 1.6 2.1e-37 127.0 1.1 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|389846147|ref|YP_006348386.1| - 2.2e-36 125.7 0.7 4.9e-36 124.5 0.5 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain EF-hand_1 PF00036.27 gi|389846147|ref|YP_006348386.1| - 0.55 9.6 0.1 0.55 9.6 0.0 2.4 3 0 0 3 3 3 0 EF hand SecE PF00584.15 gi|389846148|ref|YP_006348387.1| - 0.036 13.6 0.1 0.044 13.3 0.1 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex DUF3317 PF11779.3 gi|389846148|ref|YP_006348387.1| - 0.056 12.8 0.2 0.079 12.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) Spt5-NGN PF03439.8 gi|389846149|ref|YP_006348388.1| - 4.9e-23 80.6 0.0 8.3e-23 79.9 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|389846149|ref|YP_006348388.1| - 6.3e-08 32.0 0.4 2e-07 30.4 0.1 2.0 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|389846149|ref|YP_006348388.1| - 0.00041 20.5 0.0 0.047 13.9 0.0 2.5 1 1 0 1 1 1 1 Transcription termination factor nusG Myosin_N PF02736.14 gi|389846149|ref|YP_006348388.1| - 0.27 10.9 2.0 12 5.6 0.2 2.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain FYVE PF01363.16 gi|662859364|ref|YP_006348389.2| - 0.0079 16.0 0.2 0.0092 15.8 0.2 1.3 1 0 0 1 1 1 1 FYVE zinc finger Nudix_N_2 PF14803.1 gi|662859364|ref|YP_006348389.2| - 0.037 13.7 0.4 0.09 12.4 0.2 1.7 1 0 0 1 1 1 0 Nudix N-terminal DUF4157 PF13699.1 gi|662859364|ref|YP_006348389.2| - 0.089 12.9 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) COMP PF11598.3 gi|662859364|ref|YP_006348389.2| - 0.87 9.7 3.1 35 4.5 0.1 3.0 2 1 1 3 3 3 0 Cartilage oligomeric matrix protein PHP_C PF13263.1 gi|662859365|ref|YP_006348390.2| - 1e-17 63.3 0.1 2.1e-17 62.3 0.1 1.6 1 0 0 1 1 1 1 PHP-associated DUF457 PF04307.9 gi|662859366|ref|YP_006348391.2| - 9.9e-18 63.9 7.0 1.3e-17 63.5 4.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|662859366|ref|YP_006348391.2| - 0.0032 17.1 0.1 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C CinA PF02464.12 gi|389846153|ref|YP_006348392.1| - 2.3e-55 186.2 0.0 2.8e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein ArsA_ATPase PF02374.10 gi|389846154|ref|YP_006348393.1| - 7.3e-76 255.1 0.0 8.4e-51 172.8 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|389846154|ref|YP_006348393.1| - 1.8e-12 47.0 0.0 1.6e-11 43.9 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389846154|ref|YP_006348393.1| - 6.1e-06 26.2 0.4 0.0028 17.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389846154|ref|YP_006348393.1| - 4.6e-05 22.9 0.5 0.0089 15.4 0.0 3.1 2 1 0 3 3 3 1 AAA domain SRP54 PF00448.17 gi|389846154|ref|YP_006348393.1| - 0.0024 17.3 0.1 0.16 11.3 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|389846154|ref|YP_006348393.1| - 0.008 15.4 0.1 0.018 14.2 0.0 1.5 2 0 0 2 2 2 1 PhoH-like protein Zeta_toxin PF06414.7 gi|389846154|ref|YP_006348393.1| - 0.022 13.8 0.4 0.065 12.3 0.1 1.8 2 0 0 2 2 2 0 Zeta toxin Fer4_NifH PF00142.13 gi|389846154|ref|YP_006348393.1| - 0.026 13.7 0.1 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|389846154|ref|YP_006348393.1| - 0.036 13.4 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein IstB_IS21 PF01695.12 gi|389846154|ref|YP_006348393.1| - 0.037 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|389846154|ref|YP_006348393.1| - 0.09 11.8 0.0 0.27 10.3 0.0 1.7 2 0 0 2 2 2 0 KaiC adh_short PF00106.20 gi|389846155|ref|YP_006348394.1| - 2.4e-33 115.4 0.0 3.4e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389846155|ref|YP_006348394.1| - 7.4e-19 68.4 0.0 8.9e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389846155|ref|YP_006348394.1| - 6e-12 45.5 0.0 9.2e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|389846155|ref|YP_006348394.1| - 4.8e-07 29.9 0.2 7.8e-07 29.2 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding DUF1776 PF08643.5 gi|389846155|ref|YP_006348394.1| - 5.6e-06 25.7 0.0 1.5e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|389846155|ref|YP_006348394.1| - 0.00028 20.3 0.0 0.0021 17.5 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|389846155|ref|YP_006348394.1| - 0.0019 17.1 0.0 0.0033 16.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|389846155|ref|YP_006348394.1| - 0.013 15.2 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Endonuclease_5 PF04493.9 gi|389846156|ref|YP_006348395.1| - 3.4e-45 153.9 0.0 5.1e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|389846156|ref|YP_006348395.1| - 0.037 13.1 0.1 0.39 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF99 Rhomboid PF01694.17 gi|389846157|ref|YP_006348396.1| - 1e-28 100.1 16.9 1e-28 100.1 11.7 1.8 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|389846157|ref|YP_006348396.1| - 3e-14 52.6 3.9 4e-14 52.2 2.7 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|389846157|ref|YP_006348396.1| - 1.7e-05 25.0 1.0 1.7e-05 25.0 0.7 1.8 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.11 gi|389846157|ref|YP_006348396.1| - 0.0014 18.2 3.8 0.002 17.7 2.6 1.2 1 0 0 1 1 1 1 HIT zinc finger DUF3681 PF12442.3 gi|389846157|ref|YP_006348396.1| - 0.18 11.9 4.5 0.19 11.9 1.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3681) zf-MYND PF01753.13 gi|389846157|ref|YP_006348396.1| - 0.28 11.0 4.4 0.43 10.5 3.1 1.2 1 0 0 1 1 1 0 MYND finger C1_3 PF07649.7 gi|389846157|ref|YP_006348396.1| - 0.91 9.6 5.3 1.7 8.7 3.7 1.4 1 0 0 1 1 1 0 C1-like domain Pyrophosphatase PF00719.14 gi|389846158|ref|YP_006348397.1| - 1.9e-55 186.5 1.6 2.2e-55 186.3 1.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phage_integ_N PF09003.5 gi|389846158|ref|YP_006348397.1| - 0.076 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage lambda integrase, N-terminal domain PadR PF03551.9 gi|389846159|ref|YP_006348398.1| - 1e-17 63.6 0.5 1.4e-17 63.2 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389846159|ref|YP_006348398.1| - 9.1e-06 25.9 0.0 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389846159|ref|YP_006348398.1| - 0.0033 17.2 0.1 0.0054 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|389846159|ref|YP_006348398.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) FUR PF01475.14 gi|389846159|ref|YP_006348398.1| - 0.039 13.8 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF4364 PF14277.1 gi|389846159|ref|YP_006348398.1| - 0.098 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.1 gi|389846159|ref|YP_006348398.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3416 PF11896.3 gi|389846160|ref|YP_006348399.1| - 0.036 14.0 1.2 0.04 13.8 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) RVT_3 PF13456.1 gi|389846161|ref|YP_006348400.1| - 9.2e-23 79.8 0.0 1.3e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|389846161|ref|YP_006348400.1| - 5.9e-16 59.0 0.0 8.6e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 RNase H DSX_dimer PF08828.5 gi|389846161|ref|YP_006348400.1| - 0.16 11.5 0.2 6 6.4 0.0 3.0 3 0 0 3 3 3 0 Doublesex dimerisation domain TFIIB PF00382.14 gi|389846162|ref|YP_006348401.1| - 3.1e-47 158.2 2.5 2.7e-24 84.7 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|389846162|ref|YP_006348401.1| - 3.4e-05 23.0 0.1 6.9e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|389846162|ref|YP_006348401.1| - 0.0058 16.2 0.5 0.36 10.5 0.1 3.3 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|389846162|ref|YP_006348401.1| - 0.06 12.6 3.3 0.18 11.1 0.1 3.3 3 1 1 4 4 4 0 Sigma-70, region 4 Cyclin_C PF02984.14 gi|389846162|ref|YP_006348401.1| - 0.077 12.9 0.0 0.63 9.9 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_3 PF01381.17 gi|389846162|ref|YP_006348401.1| - 0.096 12.5 0.3 3.6 7.5 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix Cyclin_N PF00134.18 gi|389846162|ref|YP_006348401.1| - 0.099 12.2 0.0 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain HARE-HTH PF05066.8 gi|389846162|ref|YP_006348401.1| - 0.11 12.8 0.0 4.4 7.7 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain TrmB PF01978.14 gi|389846162|ref|YP_006348401.1| - 0.61 9.8 4.0 3.4 7.4 0.1 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF650 PF04894.7 gi|662859367|ref|YP_006348402.2| - 1.4e-98 329.7 0.0 1.7e-98 329.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|662859367|ref|YP_006348402.2| - 1e-33 115.2 0.0 1.6e-33 114.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) YvrJ PF12841.2 gi|389846164|ref|YP_006348403.1| - 0.0077 15.4 0.1 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 YvrJ protein family DUF4234 PF14018.1 gi|389846164|ref|YP_006348403.1| - 0.0094 15.6 0.4 0.015 15.0 0.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4234) PepSY_TM_2 PF13703.1 gi|389846164|ref|YP_006348403.1| - 0.065 13.4 0.1 0.065 13.4 0.0 1.1 1 0 0 1 1 1 0 PepSY-associated TM helix DUF2892 PF11127.3 gi|389846164|ref|YP_006348403.1| - 0.07 12.9 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) MpPF26 PF07666.6 gi|389846164|ref|YP_006348403.1| - 0.093 12.6 0.2 0.1 12.4 0.2 1.0 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF302 PF03625.9 gi|389846165|ref|YP_006348404.1| - 3.8e-19 67.9 0.0 6e-19 67.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 GrpB PF04229.9 gi|389846166|ref|YP_006348405.1| - 5.7e-49 166.0 0.0 6.5e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 GrpB protein Abi PF02517.11 gi|389846167|ref|YP_006348406.1| - 6.4e-07 29.4 3.3 5.8e-06 26.3 2.3 2.2 1 1 0 1 1 1 1 CAAX protease self-immunity Virul_fac_BrkB PF03631.10 gi|389846169|ref|YP_006348408.1| - 0.0042 16.4 8.0 0.01 15.2 5.5 1.7 1 1 1 2 2 2 1 Virulence factor BrkB DUF3040 PF11239.3 gi|389846169|ref|YP_006348408.1| - 9.5 6.3 16.8 0.37 10.8 3.2 3.5 2 1 3 5 5 5 0 Protein of unknown function (DUF3040) Mut7-C PF01927.11 gi|389846170|ref|YP_006348409.1| - 2.6e-40 137.8 0.0 2.9e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-UBP PF02148.14 gi|389846170|ref|YP_006348409.1| - 0.085 12.9 0.4 0.13 12.4 0.3 1.2 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DNA_pol_B_thumb PF14791.1 gi|389846171|ref|YP_006348410.1| - 4.4e-23 80.7 0.0 1.1e-22 79.5 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|389846171|ref|YP_006348410.1| - 5.1e-17 61.8 2.8 4.2e-15 55.6 0.2 3.4 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|389846171|ref|YP_006348410.1| - 2e-15 56.7 4.4 1.8e-09 37.6 0.4 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.14 gi|389846171|ref|YP_006348410.1| - 2e-14 53.7 0.0 1.4e-13 50.9 0.0 2.2 2 0 0 2 2 2 1 PHP domain HHH_2 PF12826.2 gi|389846171|ref|YP_006348410.1| - 3.9e-06 26.6 1.0 0.0021 17.8 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|389846171|ref|YP_006348410.1| - 0.00055 19.9 0.1 0.0034 17.4 0.0 2.4 3 0 0 3 3 3 1 DNA polymerase beta palm HHH PF00633.18 gi|389846171|ref|YP_006348410.1| - 0.0041 16.7 0.6 0.016 14.8 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|389846171|ref|YP_006348410.1| - 0.011 15.2 0.0 0.029 13.9 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Phosphodiest PF01663.17 gi|662859368|ref|YP_006348412.2| - 3.7e-58 197.5 0.0 4.3e-58 197.3 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|662859368|ref|YP_006348412.2| - 0.0055 15.9 2.8 0.011 14.9 0.5 2.2 2 0 0 2 2 2 1 Sulfatase DUF2063 PF09836.4 gi|662859368|ref|YP_006348412.2| - 0.019 14.9 0.6 0.15 12.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2063) Tubulin PF00091.20 gi|389846174|ref|YP_006348413.1| - 1.1e-22 80.9 0.5 6.8e-22 78.3 0.3 2.2 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|389846174|ref|YP_006348413.1| - 0.0092 14.9 0.1 0.018 13.9 0.1 1.5 1 0 0 1 1 1 1 Tubulin like Sua5_yciO_yrdC PF01300.13 gi|389846174|ref|YP_006348413.1| - 0.058 12.6 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Telomere recombination NPV_P10 PF05531.7 gi|389846175|ref|YP_006348414.1| - 0.012 15.8 0.5 0.24 11.6 0.1 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1515 PF07439.6 gi|389846175|ref|YP_006348414.1| - 0.017 14.9 1.5 3.2 7.5 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) IncA PF04156.9 gi|389846175|ref|YP_006348414.1| - 0.025 14.1 0.2 0.035 13.7 0.1 1.3 1 1 0 1 1 1 0 IncA protein DUF615 PF04751.9 gi|389846175|ref|YP_006348414.1| - 0.036 13.7 1.1 0.064 12.9 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF615) XhlA PF10779.4 gi|389846175|ref|YP_006348414.1| - 0.037 13.9 0.0 0.037 13.9 0.0 2.5 3 1 0 3 3 3 0 Haemolysin XhlA Reo_sigmaC PF04582.7 gi|389846175|ref|YP_006348414.1| - 0.043 13.0 4.6 0.051 12.7 3.2 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|389846175|ref|YP_006348414.1| - 0.19 9.5 0.3 0.2 9.4 0.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AATF-Che1 PF13339.1 gi|389846175|ref|YP_006348414.1| - 0.3 11.2 5.2 3.5 7.7 1.3 2.3 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor PLAC9 PF15205.1 gi|389846175|ref|YP_006348414.1| - 0.33 11.2 1.7 13 6.1 0.1 2.6 1 1 1 2 2 2 0 Placenta-specific protein 9 SPX PF03105.14 gi|389846175|ref|YP_006348414.1| - 1.3 8.7 5.9 3.1 7.4 4.1 1.4 1 1 0 1 1 1 0 SPX domain Presenilin PF01080.12 gi|389846175|ref|YP_006348414.1| - 1.3 7.7 3.4 1.7 7.3 2.4 1.1 1 0 0 1 1 1 0 Presenilin Sec3_C PF09763.4 gi|389846175|ref|YP_006348414.1| - 4.9 5.1 9.2 1.7 6.6 0.0 2.0 1 1 0 2 2 2 0 Exocyst complex component Sec3 CMV_1a PF12467.3 gi|389846175|ref|YP_006348414.1| - 5.3 7.3 9.2 1.2 9.4 4.0 1.6 2 0 0 2 2 2 0 Cucumber mosaic virus 1a protein family T2SE PF00437.15 gi|389846176|ref|YP_006348415.1| - 1.9e-29 102.3 0.0 2.8e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|389846176|ref|YP_006348415.1| - 0.0022 18.3 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|389846176|ref|YP_006348415.1| - 0.023 14.1 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|389846176|ref|YP_006348415.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|389846176|ref|YP_006348415.1| - 0.19 11.7 6.2 0.19 11.6 0.1 3.3 2 2 1 3 3 3 0 AAA ATPase domain KAP_NTPase PF07693.9 gi|389846176|ref|YP_006348415.1| - 0.27 10.1 0.0 0.4 9.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain plasmid_Toxin PF12703.2 gi|389846177|ref|YP_006348416.1| - 0.11 12.2 0.2 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 Toxin of toxin-antitoxin type 1 system NAD_binding_10 PF13460.1 gi|389846183|ref|YP_006348422.1| - 4.9e-21 75.5 0.6 7.1e-21 75.0 0.4 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|389846183|ref|YP_006348422.1| - 1.1e-14 54.5 0.0 2.3e-14 53.3 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389846183|ref|YP_006348422.1| - 3.4e-10 39.1 0.0 7.8e-09 34.6 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|389846183|ref|YP_006348422.1| - 1.8e-07 31.1 0.4 4.3e-07 29.9 0.1 1.7 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|389846183|ref|YP_006348422.1| - 0.00011 21.6 0.1 0.0002 20.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|389846183|ref|YP_006348422.1| - 0.00015 22.1 0.0 0.00036 20.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|389846183|ref|YP_006348422.1| - 0.00077 18.9 0.1 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|389846183|ref|YP_006348422.1| - 0.00086 19.1 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|389846183|ref|YP_006348422.1| - 0.00099 19.4 0.1 0.0021 18.4 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|389846183|ref|YP_006348422.1| - 0.0013 17.6 0.2 0.017 13.9 0.2 2.5 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|389846183|ref|YP_006348422.1| - 0.0021 17.3 0.1 0.0031 16.7 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.13 gi|389846183|ref|YP_006348422.1| - 0.0088 15.7 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|389846183|ref|YP_006348422.1| - 0.0099 14.8 3.1 0.049 12.5 2.1 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|389846183|ref|YP_006348422.1| - 0.025 13.5 0.2 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|389846183|ref|YP_006348422.1| - 0.025 14.8 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|389846183|ref|YP_006348422.1| - 0.04 13.8 2.0 0.086 12.7 0.9 1.8 1 1 0 1 1 1 0 short chain dehydrogenase AlaDh_PNT_C PF01262.16 gi|389846183|ref|YP_006348422.1| - 0.046 13.2 0.1 0.071 12.6 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HemX PF04375.9 gi|389846183|ref|YP_006348422.1| - 0.087 11.3 0.2 0.13 10.8 0.1 1.2 1 0 0 1 1 1 0 HemX DHH PF01368.15 gi|662859370|ref|YP_006348423.2| - 2.1e-14 53.3 0.0 3.1e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|662859370|ref|YP_006348423.2| - 3.7e-08 32.9 0.6 1.2e-07 31.3 0.4 2.0 1 1 0 1 1 1 1 DHHA1 domain SKG6 PF08693.5 gi|662859370|ref|YP_006348423.2| - 0.0045 16.2 0.6 0.0045 16.2 0.4 2.2 3 0 0 3 3 3 1 Transmembrane alpha-helix domain Aldo_ket_red PF00248.16 gi|389846185|ref|YP_006348424.1| - 2.5e-33 115.1 0.0 1.3e-32 112.7 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family zf-IS66 PF13005.2 gi|389846186|ref|YP_006348425.1| - 0.0031 17.4 0.4 1.6 8.7 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|389846186|ref|YP_006348425.1| - 0.0032 17.1 2.5 0.21 11.3 0.5 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|389846186|ref|YP_006348425.1| - 0.0068 16.0 1.0 0.0087 15.7 0.7 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.1 gi|389846186|ref|YP_006348425.1| - 0.0087 15.7 1.1 0.078 12.6 0.0 2.1 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|389846186|ref|YP_006348425.1| - 0.0099 15.6 2.2 0.016 14.9 1.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-CHY PF05495.7 gi|389846186|ref|YP_006348425.1| - 0.011 15.8 0.2 0.013 15.6 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger ADK_lid PF05191.9 gi|389846186|ref|YP_006348425.1| - 0.013 15.1 0.9 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Sgf11 PF08209.6 gi|389846186|ref|YP_006348425.1| - 0.025 13.8 2.1 2.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.7 gi|389846186|ref|YP_006348425.1| - 0.028 14.1 2.2 0.28 10.9 1.5 2.0 1 1 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|389846186|ref|YP_006348425.1| - 0.044 13.2 0.9 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|389846186|ref|YP_006348425.1| - 0.051 12.7 4.5 0.57 9.4 3.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|389846186|ref|YP_006348425.1| - 0.054 13.2 0.8 3.2 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|389846186|ref|YP_006348425.1| - 0.059 13.1 3.2 0.17 11.6 2.1 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|389846186|ref|YP_006348425.1| - 0.06 13.0 0.6 0.058 13.0 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|389846186|ref|YP_006348425.1| - 0.066 12.7 0.6 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain C1_4 PF07975.7 gi|389846186|ref|YP_006348425.1| - 0.067 13.2 1.2 0.096 12.7 0.8 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain zf-HYPF PF07503.7 gi|389846186|ref|YP_006348425.1| - 0.068 12.6 2.6 2.5 7.5 0.4 2.2 2 0 0 2 2 2 0 HypF finger NinF PF05810.7 gi|389846186|ref|YP_006348425.1| - 0.078 12.7 0.3 0.12 12.1 0.2 1.4 1 1 0 1 1 1 0 NinF protein PhnA_Zn_Ribbon PF08274.7 gi|389846186|ref|YP_006348425.1| - 0.084 12.6 2.2 1.4 8.7 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FYVE PF01363.16 gi|389846186|ref|YP_006348425.1| - 0.1 12.5 1.0 0.13 12.1 0.7 1.2 1 0 0 1 1 1 0 FYVE zinc finger LIM PF00412.17 gi|389846186|ref|YP_006348425.1| - 0.11 12.6 2.0 0.3 11.1 1.4 1.8 1 1 0 1 1 1 0 LIM domain DUF3039 PF11238.3 gi|389846186|ref|YP_006348425.1| - 0.12 11.8 0.9 0.15 11.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-ISL3 PF14690.1 gi|389846186|ref|YP_006348425.1| - 0.13 12.2 1.1 2.1 8.4 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Opy2 PF09463.5 gi|389846186|ref|YP_006348425.1| - 0.15 12.1 1.4 5.6 7.1 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein zf-C2H2_3 PF13878.1 gi|389846186|ref|YP_006348425.1| - 0.16 11.5 0.7 8 6.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.6 gi|389846186|ref|YP_006348425.1| - 0.16 11.6 3.2 0.33 10.6 2.2 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|389846186|ref|YP_006348425.1| - 0.17 11.4 2.6 4.2 6.9 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|389846186|ref|YP_006348425.1| - 0.29 11.0 2.8 0.78 9.6 1.9 1.7 1 1 0 1 1 1 0 IBR domain zinc_ribbon_2 PF13240.1 gi|389846186|ref|YP_006348425.1| - 0.31 10.5 5.2 0.87 9.1 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|389846186|ref|YP_006348425.1| - 0.31 11.4 4.3 1.8 9.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|389846186|ref|YP_006348425.1| - 0.37 10.7 3.8 2.8 7.9 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|389846186|ref|YP_006348425.1| - 0.41 10.6 5.6 2 8.4 3.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain CpXC PF14353.1 gi|389846186|ref|YP_006348425.1| - 0.53 10.2 2.9 3.2 7.7 0.1 2.0 1 1 0 2 2 2 0 CpXC protein Arc_trans_TRASH PF08394.5 gi|389846186|ref|YP_006348425.1| - 0.86 9.8 4.4 11 6.2 0.6 2.2 2 0 0 2 2 2 0 Archaeal TRASH domain YhfH PF14149.1 gi|389846186|ref|YP_006348425.1| - 1.2 9.0 5.1 5.3 6.9 3.2 2.0 1 1 1 2 2 2 0 YhfH-like protein MFS_1 PF07690.11 gi|662859371|ref|YP_006348426.2| - 5.3e-37 127.3 52.2 7.4e-29 100.5 20.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EMP70 PF02990.11 gi|662859371|ref|YP_006348426.2| - 0.018 13.5 0.8 0.029 12.8 0.1 1.6 1 1 0 1 1 1 0 Endomembrane protein 70 DUF2422 PF10337.4 gi|662859371|ref|YP_006348426.2| - 4 6.1 8.3 3.4 6.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2422) Glyco_transf_21 PF13506.1 gi|389846189|ref|YP_006348428.1| - 0.023 14.0 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 NUDIX PF00293.23 gi|389846191|ref|YP_006348430.1| - 1e-18 67.2 0.0 1.4e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DoxX PF07681.7 gi|389846192|ref|YP_006348431.1| - 5e-09 36.4 9.4 5e-09 36.4 6.5 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|389846192|ref|YP_006348431.1| - 0.0012 18.5 4.9 0.0024 17.5 3.4 1.5 1 1 0 1 1 1 1 TQO small subunit DoxD Bac_luciferase PF00296.15 gi|389846193|ref|YP_006348432.1| - 0.0042 16.2 6.7 0.0096 15.0 4.7 1.7 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.19 gi|389846194|ref|YP_006348433.1| - 2e-60 204.6 6.2 2.3e-60 204.4 4.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389846194|ref|YP_006348433.1| - 1e-06 27.9 0.6 1.4e-06 27.4 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|389846194|ref|YP_006348433.1| - 1.4e-06 28.2 0.1 3.4e-06 26.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|389846194|ref|YP_006348433.1| - 2.3e-06 27.6 0.3 0.00032 20.6 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846194|ref|YP_006348433.1| - 3.7e-06 27.2 0.1 3.2e-05 24.2 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389846194|ref|YP_006348433.1| - 6.3e-06 24.9 0.1 0.00051 18.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|389846194|ref|YP_006348433.1| - 1.7e-05 24.6 0.7 0.011 15.5 0.0 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding ApbA PF02558.11 gi|389846194|ref|YP_006348433.1| - 4.8e-05 22.8 0.0 9.8e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|389846194|ref|YP_006348433.1| - 5.2e-05 22.4 0.0 0.0001 21.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|389846194|ref|YP_006348433.1| - 0.00014 22.0 0.0 0.00023 21.2 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|389846194|ref|YP_006348433.1| - 0.00033 20.3 0.1 0.00063 19.4 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|389846194|ref|YP_006348433.1| - 0.00036 19.7 0.1 0.00059 18.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|389846194|ref|YP_006348433.1| - 0.00036 19.9 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|389846194|ref|YP_006348433.1| - 0.00095 18.9 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|389846194|ref|YP_006348433.1| - 0.0028 17.6 0.5 0.016 15.2 0.0 2.3 2 0 0 2 2 2 1 NADH(P)-binding FAD_oxidored PF12831.2 gi|389846194|ref|YP_006348433.1| - 0.0043 16.1 0.3 0.024 13.7 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|389846194|ref|YP_006348433.1| - 0.0045 17.2 0.1 0.012 15.8 0.1 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|389846194|ref|YP_006348433.1| - 0.0069 15.2 0.1 0.0094 14.8 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A ThiF PF00899.16 gi|389846194|ref|YP_006348433.1| - 0.015 15.1 0.0 0.056 13.2 0.0 2.0 2 0 0 2 2 2 0 ThiF family HSP20 PF00011.16 gi|389846195|ref|YP_006348434.1| - 2e-05 24.3 0.0 4e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family zf-RING_3 PF14369.1 gi|662859372|ref|YP_006348435.2| - 0.0034 17.3 0.1 0.0049 16.8 0.1 1.3 1 0 0 1 1 1 1 zinc-finger zf-Di19 PF05605.7 gi|662859372|ref|YP_006348435.2| - 0.018 15.1 0.1 0.031 14.3 0.1 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_CPXG PF14255.1 gi|662859372|ref|YP_006348435.2| - 0.054 13.3 1.0 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.1 gi|662859372|ref|YP_006348435.2| - 0.12 11.9 0.6 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING-like PF08746.6 gi|662859372|ref|YP_006348435.2| - 0.13 12.3 1.5 0.38 10.7 1.0 1.8 1 1 0 1 1 1 0 RING-like domain zf-ribbon_3 PF13248.1 gi|662859372|ref|YP_006348435.2| - 0.16 11.2 0.8 0.48 9.6 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.10 gi|662859372|ref|YP_006348435.2| - 0.17 11.3 1.4 11 5.5 0.0 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Radical_SAM PF04055.16 gi|389846197|ref|YP_006348436.1| - 2.1e-15 57.2 0.0 7.2e-15 55.5 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|389846197|ref|YP_006348436.1| - 6.5e-07 28.7 0.0 2.4e-06 26.9 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|389846197|ref|YP_006348436.1| - 0.00017 21.4 0.0 0.00052 19.8 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|389846197|ref|YP_006348436.1| - 0.00095 19.2 0.0 0.0041 17.2 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.6 gi|389846197|ref|YP_006348436.1| - 0.0028 17.4 0.1 0.0092 15.8 0.0 1.9 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.2 gi|389846197|ref|YP_006348436.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif MFS_1 PF07690.11 gi|389846198|ref|YP_006348437.1| - 6.6e-23 80.9 46.5 1.9e-18 66.3 17.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|389846198|ref|YP_006348437.1| - 5.3e-06 25.2 2.8 0.0017 16.9 0.0 2.9 1 1 2 3 3 3 2 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|389846198|ref|YP_006348437.1| - 0.0012 17.4 5.1 0.0012 17.4 3.6 2.7 2 2 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|389846198|ref|YP_006348437.1| - 0.0015 18.2 0.2 0.015 15.1 0.0 2.6 3 0 0 3 3 3 1 MFS_1 like family TRAM PF01938.15 gi|389846199|ref|YP_006348438.1| - 1.9e-14 53.1 3.1 3.7e-14 52.2 2.1 1.5 1 0 0 1 1 1 1 TRAM domain CxxCxxCC PF03692.10 gi|389846200|ref|YP_006348439.1| - 3.1e-13 49.9 0.0 6.9e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|389846200|ref|YP_006348439.1| - 0.02 15.0 0.7 0.02 15.0 0.5 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein LRV_FeS PF05484.6 gi|389846200|ref|YP_006348439.1| - 0.12 11.9 0.4 0.12 11.9 0.3 2.0 2 0 0 2 2 2 0 LRV protein FeS4 cluster Lactamase_B PF00753.22 gi|389846201|ref|YP_006348440.1| - 1.1e-13 51.2 7.6 2e-13 50.4 5.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389846201|ref|YP_006348440.1| - 0.00061 19.3 0.1 0.00063 19.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1442 PF07279.6 gi|389846201|ref|YP_006348440.1| - 0.017 14.1 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) DUF664 PF04978.7 gi|389846201|ref|YP_006348440.1| - 0.034 14.3 0.3 0.064 13.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF664) HTH_24 PF13412.1 gi|662859373|ref|YP_006348441.2| - 6.1e-06 25.5 0.0 1.2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|662859373|ref|YP_006348441.2| - 0.00041 20.0 0.3 0.001 18.8 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|662859373|ref|YP_006348441.2| - 0.00046 19.8 0.1 0.00061 19.4 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|662859373|ref|YP_006348441.2| - 0.0013 18.1 0.2 0.002 17.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|662859373|ref|YP_006348441.2| - 0.0026 17.4 0.3 0.014 15.1 0.1 2.2 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_36 PF13730.1 gi|662859373|ref|YP_006348441.2| - 0.0046 17.0 0.0 0.0064 16.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|662859373|ref|YP_006348441.2| - 0.0065 16.7 0.0 0.0099 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|662859373|ref|YP_006348441.2| - 0.01 15.3 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|662859373|ref|YP_006348441.2| - 0.02 14.5 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|662859373|ref|YP_006348441.2| - 0.07 12.8 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RNA_pol_Rpc34 PF05158.7 gi|662859373|ref|YP_006348441.2| - 0.095 11.8 0.0 0.095 11.8 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.1 gi|662859373|ref|YP_006348441.2| - 0.099 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|389846203|ref|YP_006348442.1| - 0.001 18.4 0.4 0.0035 16.7 0.3 1.8 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|389846203|ref|YP_006348442.1| - 0.0023 18.1 1.7 0.004 17.4 1.2 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.1 gi|389846203|ref|YP_006348442.1| - 0.0039 17.4 0.1 0.91 9.8 0.0 2.2 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|389846203|ref|YP_006348442.1| - 0.0056 15.8 1.0 0.77 9.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|389846203|ref|YP_006348442.1| - 0.0081 15.7 1.8 2.1 7.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|389846203|ref|YP_006348442.1| - 0.012 15.2 1.7 2.6 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cytochrom_NNT PF03264.9 gi|389846203|ref|YP_006348442.1| - 0.013 14.9 2.2 0.013 14.9 1.5 1.0 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Ogr_Delta PF04606.7 gi|389846203|ref|YP_006348442.1| - 0.018 14.6 2.0 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2 PF00096.21 gi|389846203|ref|YP_006348442.1| - 0.019 15.2 3.2 0.27 11.6 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.2 gi|389846203|ref|YP_006348442.1| - 0.021 14.6 0.6 0.037 13.8 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|389846203|ref|YP_006348442.1| - 0.022 14.7 1.4 4.1 7.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.14 gi|389846203|ref|YP_006348442.1| - 0.031 13.9 0.3 0.032 13.9 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|389846203|ref|YP_006348442.1| - 0.038 13.7 4.8 0.13 12.0 3.3 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|389846203|ref|YP_006348442.1| - 0.039 13.7 5.3 1 9.2 3.7 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-CSL PF05207.8 gi|389846203|ref|YP_006348442.1| - 0.039 13.4 0.3 0.054 13.0 0.2 1.2 1 0 0 1 1 1 0 CSL zinc finger Cytochrome_C554 PF13435.1 gi|389846203|ref|YP_006348442.1| - 0.058 13.4 1.4 0.065 13.2 1.0 1.1 1 0 0 1 1 1 0 Cytochrome c554 and c-prime DRP PF06044.7 gi|389846203|ref|YP_006348442.1| - 0.061 12.3 0.1 0.083 11.8 0.1 1.3 1 1 0 1 1 1 0 Dam-replacing family Zn-ribbon_8 PF09723.5 gi|389846203|ref|YP_006348442.1| - 0.075 12.9 4.1 0.61 10.0 2.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|389846203|ref|YP_006348442.1| - 0.086 12.7 1.3 5.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.7 gi|389846203|ref|YP_006348442.1| - 0.098 12.4 1.2 0.53 10.1 0.8 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-Di19 PF05605.7 gi|389846203|ref|YP_006348442.1| - 0.14 12.2 6.2 0.45 10.6 4.3 1.7 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_3 PF14369.1 gi|389846203|ref|YP_006348442.1| - 0.2 11.6 3.6 0.38 10.7 2.5 1.5 1 1 0 1 1 1 0 zinc-finger RNA_POL_M_15KD PF02150.11 gi|389846203|ref|YP_006348442.1| - 0.22 11.2 2.5 0.75 9.5 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_4 PF13894.1 gi|389846203|ref|YP_006348442.1| - 0.44 11.0 2.9 6.5 7.3 0.6 2.4 2 1 0 2 2 2 0 C2H2-type zinc finger DUF4379 PF14311.1 gi|389846203|ref|YP_006348442.1| - 0.45 10.3 2.2 0.73 9.6 1.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) zf-TFIIB PF13453.1 gi|389846203|ref|YP_006348442.1| - 0.67 9.1 3.0 3.1 7.0 0.3 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|389846203|ref|YP_006348442.1| - 1.4 8.9 5.8 4.6 7.2 0.1 2.3 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Rubredoxin PF00301.15 gi|389846203|ref|YP_006348442.1| - 1.6 8.6 5.1 15 5.5 3.5 2.0 1 1 0 1 1 1 0 Rubredoxin Prok-RING_1 PF14446.1 gi|389846203|ref|YP_006348442.1| - 4.3 7.1 8.5 1.3 8.8 0.6 2.1 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 Methyltransf_11 PF08241.7 gi|389846204|ref|YP_006348443.1| - 5.1e-22 78.1 0.0 1e-21 77.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846204|ref|YP_006348443.1| - 1.3e-16 60.5 0.0 1.9e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846204|ref|YP_006348443.1| - 2.9e-16 60.0 0.0 5.7e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846204|ref|YP_006348443.1| - 2e-15 57.0 0.1 3.2e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846204|ref|YP_006348443.1| - 3.4e-15 56.1 0.0 4.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846204|ref|YP_006348443.1| - 1.3e-14 53.8 0.0 2.6e-14 52.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|389846204|ref|YP_006348443.1| - 5e-13 49.3 0.0 8.1e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846204|ref|YP_006348443.1| - 5.1e-12 45.8 0.1 8.3e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|389846204|ref|YP_006348443.1| - 3.9e-08 33.0 0.0 1.2e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.6 gi|389846204|ref|YP_006348443.1| - 1e-06 27.6 0.0 1.4e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|389846204|ref|YP_006348443.1| - 6.5e-06 25.6 0.0 9.7e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|389846204|ref|YP_006348443.1| - 0.00011 21.7 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.15 gi|389846204|ref|YP_006348443.1| - 0.00014 21.0 0.0 0.00017 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|389846204|ref|YP_006348443.1| - 0.0003 19.9 0.0 0.00045 19.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.12 gi|389846204|ref|YP_006348443.1| - 0.00099 18.2 0.0 0.0015 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|389846204|ref|YP_006348443.1| - 0.0012 18.0 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|389846204|ref|YP_006348443.1| - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|389846204|ref|YP_006348443.1| - 0.0024 16.9 0.0 0.0034 16.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) tRNA_U5-meth_tr PF05958.6 gi|389846204|ref|YP_006348443.1| - 0.0068 15.1 0.0 0.011 14.4 0.0 1.3 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_20 PF12147.3 gi|389846204|ref|YP_006348443.1| - 0.0094 14.8 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|389846204|ref|YP_006348443.1| - 0.02 14.5 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|389846204|ref|YP_006348443.1| - 0.029 14.3 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase NodS PF05401.6 gi|389846204|ref|YP_006348443.1| - 0.029 13.7 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) TPMT PF05724.6 gi|389846204|ref|YP_006348443.1| - 0.039 13.3 0.0 0.066 12.6 0.0 1.3 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.14 gi|389846204|ref|YP_006348443.1| - 0.041 13.4 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|389846204|ref|YP_006348443.1| - 0.056 12.6 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF938 PF06080.7 gi|389846204|ref|YP_006348443.1| - 0.076 12.5 0.0 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF938) Methyltrans_SAM PF10672.4 gi|389846204|ref|YP_006348443.1| - 0.12 11.1 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Glycos_transf_2 PF00535.21 gi|662859374|ref|YP_006348444.2| - 8.7e-17 61.3 0.0 3.6e-16 59.3 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|662859374|ref|YP_006348444.2| - 1.6e-09 37.9 0.5 3.6e-09 36.7 0.3 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.9 gi|662859374|ref|YP_006348444.2| - 0.0077 15.6 0.3 0.76 9.2 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of galactosyltransferase Glyco_trans_2_3 PF13632.1 gi|662859374|ref|YP_006348444.2| - 0.091 12.4 0.1 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|662859374|ref|YP_006348444.2| - 0.14 11.2 0.0 1.7 7.6 0.0 2.0 1 1 1 2 2 2 0 Glycosyltransferase like family 2 Amidohydro_2 PF04909.9 gi|389846206|ref|YP_006348445.1| - 4e-17 62.6 0.4 5.4e-17 62.2 0.3 1.2 1 0 0 1 1 1 1 Amidohydrolase HTH_10 PF04967.7 gi|389846207|ref|YP_006348446.1| - 5.7e-15 54.6 0.3 8.3e-15 54.1 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|389846207|ref|YP_006348446.1| - 0.00025 20.5 2.4 0.00041 19.8 1.0 2.0 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|389846207|ref|YP_006348446.1| - 0.0006 19.0 0.3 0.00092 18.4 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|389846207|ref|YP_006348446.1| - 0.0052 16.1 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389846207|ref|YP_006348446.1| - 0.021 14.4 0.1 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|389846207|ref|YP_006348446.1| - 0.035 13.7 0.2 0.083 12.5 0.1 1.7 1 0 0 1 1 1 0 MarR family UPF0122 PF04297.9 gi|389846207|ref|YP_006348446.1| - 0.046 13.7 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Cpn60_TCP1 PF00118.19 gi|389846209|ref|YP_006348448.1| - 3.9e-146 487.4 4.8 4.4e-146 487.3 3.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family UPF0126 PF03458.8 gi|389846210|ref|YP_006348449.1| - 3e-39 132.5 31.0 1.8e-21 75.5 8.6 2.3 2 0 0 2 2 2 2 UPF0126 domain DctQ PF04290.7 gi|389846210|ref|YP_006348449.1| - 3.2 7.5 9.0 0.58 9.9 3.4 1.9 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component SAM_adeno_trans PF01887.11 gi|389846211|ref|YP_006348450.1| - 7.2e-77 257.9 0.0 8.1e-77 257.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|662859375|ref|YP_006348451.2| - 6.9e-16 58.6 0.0 1.1e-15 58.0 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|662859375|ref|YP_006348451.2| - 0.026 13.9 0.0 0.22 10.9 0.0 2.2 1 1 2 3 3 3 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.8 gi|389846213|ref|YP_006348452.1| - 5.8e-35 120.4 3.3 8.9e-35 119.8 2.3 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|389846213|ref|YP_006348452.1| - 1.9e-29 102.7 0.0 5.5e-21 74.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|389846213|ref|YP_006348452.1| - 1.8e-17 63.1 0.1 1e-10 41.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|389846213|ref|YP_006348452.1| - 1.3e-14 54.0 0.0 5.2e-08 32.5 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|389846213|ref|YP_006348452.1| - 6.6e-10 38.8 0.0 0.0005 19.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|389846213|ref|YP_006348452.1| - 8.8e-10 38.1 0.4 1.9e-09 37.0 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|389846213|ref|YP_006348452.1| - 1.7e-09 36.9 0.9 0.015 14.1 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA PF00004.24 gi|389846213|ref|YP_006348452.1| - 1.1e-06 28.8 0.0 0.053 13.7 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|389846213|ref|YP_006348452.1| - 1e-05 24.7 1.3 0.0016 17.5 0.0 2.7 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|389846213|ref|YP_006348452.1| - 1.3e-05 25.2 0.0 0.092 12.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|389846213|ref|YP_006348452.1| - 7.8e-05 21.5 0.5 0.038 12.7 0.0 2.6 3 0 0 3 3 3 2 TIP49 C-terminus AAA_22 PF13401.1 gi|389846213|ref|YP_006348452.1| - 0.00011 22.3 0.0 0.0066 16.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|389846213|ref|YP_006348452.1| - 0.00058 19.4 0.1 0.72 9.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|389846213|ref|YP_006348452.1| - 0.0014 18.9 0.0 0.0081 16.4 0.0 2.4 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.1 gi|389846213|ref|YP_006348452.1| - 0.0019 17.7 0.0 0.023 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|389846213|ref|YP_006348452.1| - 0.0037 16.9 0.0 0.013 15.2 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_PrkA PF08298.6 gi|389846213|ref|YP_006348452.1| - 0.0039 15.9 0.0 0.19 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain PhoH PF02562.11 gi|389846213|ref|YP_006348452.1| - 0.0075 15.5 0.0 0.015 14.5 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_33 PF13671.1 gi|389846213|ref|YP_006348452.1| - 0.011 15.5 1.2 0.042 13.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|389846213|ref|YP_006348452.1| - 0.014 14.3 0.0 0.087 11.7 0.0 2.3 3 0 0 3 3 3 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|389846213|ref|YP_006348452.1| - 0.016 14.3 0.0 0.039 13.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|389846213|ref|YP_006348452.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|389846213|ref|YP_006348452.1| - 0.022 13.4 0.0 0.037 12.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|389846213|ref|YP_006348452.1| - 0.026 13.4 0.0 0.052 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|389846213|ref|YP_006348452.1| - 0.03 14.6 0.0 0.1 12.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|389846213|ref|YP_006348452.1| - 0.032 14.2 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|389846213|ref|YP_006348452.1| - 0.032 13.6 0.0 0.1 11.9 0.0 1.8 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|389846213|ref|YP_006348452.1| - 0.055 14.2 0.1 0.49 11.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|389846213|ref|YP_006348452.1| - 0.087 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Abi PF02517.11 gi|389846214|ref|YP_006348453.1| - 4.9e-13 49.0 10.4 4.9e-13 49.0 7.2 2.0 3 0 0 3 3 3 1 CAAX protease self-immunity DUF3464 PF11947.3 gi|389846214|ref|YP_006348453.1| - 4.2 6.8 10.9 0.078 12.4 0.8 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3464) Mitofilin PF09731.4 gi|389846214|ref|YP_006348453.1| - 9.9 4.6 8.5 14 4.1 5.9 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF3040 PF11239.3 gi|389846215|ref|YP_006348454.1| - 0.86 9.6 6.0 0.44 10.6 2.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3185 PF11381.3 gi|389846215|ref|YP_006348454.1| - 1.8 8.3 9.1 0.43 10.3 0.4 2.8 2 2 1 3 3 2 0 Protein of unknown function (DUF3185) DUF308 PF03729.8 gi|389846215|ref|YP_006348454.1| - 6.2 6.8 12.6 1.8 8.6 5.8 2.2 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DNA_binding_1 PF01035.15 gi|389846216|ref|YP_006348455.1| - 4.9e-09 35.8 0.0 6.8e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain IGPS PF00218.16 gi|662859376|ref|YP_006348456.2| - 3.4e-72 242.5 0.0 4.1e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|662859376|ref|YP_006348456.2| - 1.6e-06 27.7 0.0 3.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|662859376|ref|YP_006348456.2| - 0.0014 17.9 0.0 0.019 14.2 0.0 2.3 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|662859376|ref|YP_006348456.2| - 0.0025 16.8 0.1 0.01 14.8 0.1 2.1 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|662859376|ref|YP_006348456.2| - 0.0034 16.2 0.5 0.0097 14.7 0.4 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Amidohydro_3 PF07969.6 gi|662859376|ref|YP_006348456.2| - 0.0095 15.1 0.2 0.016 14.4 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase family PcrB PF01884.12 gi|662859376|ref|YP_006348456.2| - 0.012 14.8 0.3 0.04 13.1 0.1 1.9 1 1 1 2 2 2 0 PcrB family DUF556 PF04476.8 gi|662859376|ref|YP_006348456.2| - 0.026 13.7 0.5 3.1 6.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF556) DHO_dh PF01180.16 gi|662859376|ref|YP_006348456.2| - 0.061 12.2 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|662859376|ref|YP_006348456.2| - 0.075 12.0 0.1 0.27 10.2 0.0 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DUF4350 PF14258.1 gi|662859376|ref|YP_006348456.2| - 0.28 11.3 0.1 0.28 11.3 0.1 2.6 4 1 1 5 5 5 0 Domain of unknown function (DUF4350) PALP PF00291.20 gi|389846218|ref|YP_006348457.1| - 4.8e-36 124.5 0.4 7e-36 124.0 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|389846219|ref|YP_006348458.1| - 6.7e-92 306.6 0.0 7.8e-92 306.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|389846219|ref|YP_006348458.1| - 2.8e-05 23.4 0.3 0.0003 20.1 0.1 2.1 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|389846219|ref|YP_006348458.1| - 0.0005 19.4 0.1 0.0011 18.3 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|389846219|ref|YP_006348458.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DeoC PF01791.4 gi|389846220|ref|YP_006348459.1| - 2.7e-38 131.5 0.0 3.5e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|389846220|ref|YP_006348459.1| - 0.00075 18.8 0.1 0.0014 17.9 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TMP-TENI PF02581.12 gi|389846220|ref|YP_006348459.1| - 0.0072 15.4 0.7 1.4 8.0 0.1 3.0 3 1 0 3 3 3 1 Thiamine monophosphate synthase/TENI OMPdecase PF00215.19 gi|389846220|ref|YP_006348459.1| - 0.019 14.3 0.2 0.026 13.9 0.1 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF3197 PF11432.3 gi|389846220|ref|YP_006348459.1| - 0.055 13.4 0.1 3.8 7.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3197) ETF PF01012.16 gi|389846220|ref|YP_006348459.1| - 0.055 13.1 1.2 1.4 8.6 0.8 2.4 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DUF561 PF04481.7 gi|389846220|ref|YP_006348459.1| - 0.064 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) PEP_mutase PF13714.1 gi|389846220|ref|YP_006348459.1| - 0.087 12.0 2.0 0.21 10.7 0.6 2.2 1 1 2 3 3 3 0 Phosphoenolpyruvate phosphomutase DNA_binding_1 PF01035.15 gi|389846221|ref|YP_006348460.1| - 3.7e-24 84.2 0.0 4.8e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HET-s_218-289 PF11558.3 gi|389846221|ref|YP_006348460.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Het-s 218-289 Acetyltransf_10 PF13673.1 gi|389846222|ref|YP_006348461.1| - 1e-16 61.0 0.1 1.2e-16 60.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389846222|ref|YP_006348461.1| - 3.3e-14 52.7 0.1 6.1e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389846222|ref|YP_006348461.1| - 4.4e-13 49.0 0.4 7.7e-13 48.2 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|389846222|ref|YP_006348461.1| - 3.1e-09 36.7 0.6 4e-08 33.1 0.4 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389846222|ref|YP_006348461.1| - 2e-06 27.8 0.0 2.8e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389846222|ref|YP_006348461.1| - 0.00015 21.4 0.0 0.00029 20.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_5 PF13444.1 gi|389846222|ref|YP_006348461.1| - 0.041 14.4 0.1 0.093 13.3 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|389846222|ref|YP_006348461.1| - 0.05 13.5 0.1 0.099 12.6 0.1 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_10 PF04967.7 gi|389846223|ref|YP_006348462.1| - 3.4e-13 48.9 0.0 6.3e-13 48.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389846223|ref|YP_006348462.1| - 0.0063 15.8 0.1 0.011 14.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 ATP-synt_DE PF00401.15 gi|389846223|ref|YP_006348462.1| - 0.054 13.3 0.1 0.094 12.6 0.1 1.3 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HTH_IclR PF09339.5 gi|389846223|ref|YP_006348462.1| - 0.066 12.8 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389846223|ref|YP_006348462.1| - 0.1 12.0 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Nitroreductase PF00881.19 gi|389846224|ref|YP_006348463.1| - 7.9e-20 71.3 0.0 1e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family EamA PF00892.15 gi|389846225|ref|YP_006348464.1| - 3.1e-15 56.3 23.2 5.4e-11 42.6 7.2 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389846225|ref|YP_006348464.1| - 0.00033 20.8 29.0 0.0081 16.3 7.7 3.4 1 1 3 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|389846225|ref|YP_006348464.1| - 0.012 15.2 11.4 0.018 14.7 1.0 2.5 2 1 0 2 2 2 0 Triose-phosphate Transporter family DHQS PF01959.11 gi|662859377|ref|YP_006348467.2| - 2e-151 503.7 3.6 2.3e-151 503.4 2.5 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) QRPTase_C PF01729.14 gi|662859377|ref|YP_006348467.2| - 0.0091 15.5 1.3 0.079 12.4 0.1 2.3 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.1 gi|662859377|ref|YP_006348467.2| - 0.021 14.7 1.2 1.7 8.5 0.0 3.3 4 0 0 4 4 4 0 Hint domain Hint PF01079.15 gi|662859377|ref|YP_006348467.2| - 0.028 13.6 0.0 0.42 9.7 0.0 2.2 2 0 0 2 2 2 0 Hint module UPF0086 PF01868.11 gi|662859377|ref|YP_006348467.2| - 0.075 12.6 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function UPF0086 DZR PF12773.2 gi|389846229|ref|YP_006348468.1| - 0.0023 17.6 0.5 0.0036 17.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|389846229|ref|YP_006348468.1| - 0.0046 17.1 2.3 0.0096 16.1 1.6 1.5 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.1 gi|389846229|ref|YP_006348468.1| - 0.015 14.4 0.6 0.024 13.8 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain SLAC1 PF03595.12 gi|389846229|ref|YP_006348468.1| - 0.048 12.3 5.5 0.061 11.9 3.8 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel Rad50_zn_hook PF04423.9 gi|389846229|ref|YP_006348468.1| - 0.19 11.2 1.5 0.31 10.5 0.2 1.8 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc-ribbons_6 PF07191.7 gi|389846229|ref|YP_006348468.1| - 0.21 11.3 1.0 1.1 9.0 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbons DUF4231 PF14015.1 gi|389846229|ref|YP_006348468.1| - 0.56 10.2 5.4 0.19 11.7 1.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) DHquinase_I PF01487.10 gi|389846230|ref|YP_006348469.1| - 1.8e-46 158.6 0.0 2.1e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase N6_N4_Mtase PF01555.13 gi|662859378|ref|YP_006348470.2| - 2e-37 128.9 0.0 4e-37 127.9 0.0 1.5 2 0 0 2 2 2 1 DNA methylase Methyltransf_26 PF13659.1 gi|662859378|ref|YP_006348470.2| - 4.3e-13 49.3 0.1 1.5e-05 25.0 0.0 2.6 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|662859378|ref|YP_006348470.2| - 1.5e-05 25.4 0.0 1.1 9.8 0.0 3.3 3 0 0 3 3 3 2 Methyltransferase domain UPF0020 PF01170.13 gi|662859378|ref|YP_006348470.2| - 2.4e-05 23.9 0.0 0.048 13.2 0.0 2.7 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|662859378|ref|YP_006348470.2| - 0.0013 19.3 0.1 0.068 13.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain AAA_17 PF13207.1 gi|662859378|ref|YP_006348470.2| - 0.094 13.5 0.0 0.32 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MethyltransfD12 PF02086.10 gi|662859378|ref|YP_006348470.2| - 0.097 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_12 PF08242.7 gi|662859378|ref|YP_006348470.2| - 0.12 12.8 0.1 24 5.4 0.0 2.7 3 0 0 3 3 3 0 Methyltransferase domain TFIIB PF00382.14 gi|389846232|ref|YP_006348471.1| - 1.4e-41 140.0 0.7 1.9e-21 75.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|389846232|ref|YP_006348471.1| - 2e-15 55.8 2.0 2e-15 55.8 1.4 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|389846232|ref|YP_006348471.1| - 0.0039 16.4 0.9 1.3 8.3 0.0 4.2 4 0 0 4 4 4 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|389846232|ref|YP_006348471.1| - 0.0045 16.6 1.4 0.012 15.2 1.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|389846232|ref|YP_006348471.1| - 0.011 15.2 1.0 0.02 14.3 0.7 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|389846232|ref|YP_006348471.1| - 0.012 14.8 1.3 0.021 14.0 0.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|389846232|ref|YP_006348471.1| - 0.044 13.2 1.7 0.083 12.3 1.2 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|389846232|ref|YP_006348471.1| - 0.082 12.6 0.7 0.22 11.2 0.5 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Lar_restr_allev PF14354.1 gi|389846232|ref|YP_006348471.1| - 0.21 11.9 4.8 0.096 12.9 0.6 2.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar HTH_AsnC-type PF13404.1 gi|389846232|ref|YP_006348471.1| - 0.24 10.9 2.0 1.4 8.4 0.0 3.1 3 1 1 4 4 4 0 AsnC-type helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|389846232|ref|YP_006348471.1| - 0.55 10.2 4.5 0.87 9.5 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Peripla_BP_2 PF01497.13 gi|389846233|ref|YP_006348472.1| - 6.5e-19 67.9 0.0 1.2e-18 67.1 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DUF2312 PF10073.4 gi|389846233|ref|YP_006348472.1| - 0.086 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) NTPase_I-T PF01931.13 gi|662859379|ref|YP_006348473.2| - 6.3e-39 133.4 0.0 7.9e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 UPF0104 PF03706.8 gi|389846235|ref|YP_006348474.1| - 1.2e-36 126.5 25.5 2.5e-36 125.4 17.7 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|389846235|ref|YP_006348474.1| - 2e-26 92.6 0.0 2.9e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389846235|ref|YP_006348474.1| - 1e-15 58.1 1.6 2.2e-15 57.0 1.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|389846235|ref|YP_006348474.1| - 5.7e-07 28.8 0.0 8.2e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|389846235|ref|YP_006348474.1| - 0.0017 18.5 0.1 0.0034 17.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|389846235|ref|YP_006348474.1| - 0.036 13.7 0.9 0.092 12.4 0.7 1.6 1 0 0 1 1 1 0 Glycosyl transferase family group 2 HTH_24 PF13412.1 gi|389846236|ref|YP_006348475.1| - 0.0071 15.7 0.1 4 6.9 0.0 2.9 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|389846236|ref|YP_006348475.1| - 0.02 15.2 0.0 0.023 15.0 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal LexA_DNA_bind PF01726.11 gi|389846236|ref|YP_006348475.1| - 0.058 12.9 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|389846237|ref|YP_006348476.1| - 1.6e-09 37.4 0.1 0.0011 18.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.1 gi|389846237|ref|YP_006348476.1| - 3.7e-08 33.2 0.0 0.0047 16.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|389846237|ref|YP_006348476.1| - 5e-08 32.1 0.0 1.1e-05 24.6 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389846237|ref|YP_006348476.1| - 2.2e-07 30.3 0.0 4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|389846237|ref|YP_006348476.1| - 3.3e-07 29.8 0.2 1.7e-05 24.4 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|389846237|ref|YP_006348476.1| - 4.3e-06 26.2 0.0 0.0036 16.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389846237|ref|YP_006348476.1| - 8.5e-06 25.3 0.0 0.0025 17.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389846237|ref|YP_006348476.1| - 2.5e-05 23.7 1.1 0.0039 16.7 0.1 3.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|389846237|ref|YP_006348476.1| - 0.00014 21.3 0.0 0.00033 20.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|389846237|ref|YP_006348476.1| - 0.00016 21.3 0.0 0.00054 19.6 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.1 gi|389846237|ref|YP_006348476.1| - 0.00036 20.2 0.0 0.0028 17.4 0.0 2.3 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389846237|ref|YP_006348476.1| - 0.00042 19.7 0.0 0.0011 18.4 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|389846237|ref|YP_006348476.1| - 0.0051 16.2 0.1 0.02 14.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family KorB PF08535.5 gi|389846237|ref|YP_006348476.1| - 0.0056 16.8 0.0 0.01 15.9 0.0 1.3 1 0 0 1 1 1 1 KorB domain HTH_36 PF13730.1 gi|389846237|ref|YP_006348476.1| - 0.0082 16.2 0.0 0.022 14.9 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|389846237|ref|YP_006348476.1| - 0.0098 16.1 0.0 0.12 12.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|389846237|ref|YP_006348476.1| - 0.018 15.3 0.0 0.21 11.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain RepL PF05732.6 gi|389846237|ref|YP_006348476.1| - 0.028 13.6 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_10 PF04967.7 gi|389846237|ref|YP_006348476.1| - 0.033 13.7 0.0 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389846237|ref|YP_006348476.1| - 0.034 13.4 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.7 gi|389846237|ref|YP_006348476.1| - 0.037 14.1 0.0 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein Fe_dep_repress PF01325.14 gi|389846237|ref|YP_006348476.1| - 0.041 13.8 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.17 gi|389846237|ref|YP_006348476.1| - 0.044 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix MerR_1 PF13411.1 gi|389846237|ref|YP_006348476.1| - 0.056 13.2 0.0 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 MerR HTH family regulatory protein Phage_CI_repr PF07022.8 gi|389846237|ref|YP_006348476.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_29 PF13551.1 gi|389846237|ref|YP_006348476.1| - 0.079 13.1 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_6 PF01418.12 gi|389846237|ref|YP_006348476.1| - 0.087 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Tnp_1 PF01527.15 gi|389846237|ref|YP_006348476.1| - 0.11 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_26 PF13443.1 gi|389846237|ref|YP_006348476.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_22 PF13309.1 gi|389846237|ref|YP_006348476.1| - 0.14 11.9 0.0 0.68 9.7 0.0 2.1 3 0 0 3 3 2 0 HTH domain LRV PF01816.12 gi|389846237|ref|YP_006348476.1| - 2.8 8.3 4.9 1.2 9.4 0.9 2.4 2 0 0 2 2 1 0 Leucine rich repeat variant Band_7 PF01145.20 gi|389846238|ref|YP_006348477.1| - 2e-38 132.0 4.2 2e-38 132.0 2.9 2.5 3 0 0 3 3 3 2 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|389846238|ref|YP_006348477.1| - 0.00027 20.5 0.1 0.00072 19.1 0.1 1.7 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|389846239|ref|YP_006348478.1| - 7.5e-26 91.1 2.7 9.7e-26 90.7 1.9 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family NfeD PF01957.13 gi|389846240|ref|YP_006348479.1| - 6.1e-13 49.1 1.5 8.4e-13 48.6 1.0 1.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF4131 PF13567.1 gi|389846240|ref|YP_006348479.1| - 0.047 13.0 1.0 0.073 12.4 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PUA PF01472.15 gi|389846240|ref|YP_006348479.1| - 0.11 12.2 0.3 0.23 11.2 0.2 1.6 1 0 0 1 1 1 0 PUA domain Mrr_cat PF04471.7 gi|389846241|ref|YP_006348480.1| - 6.6e-07 29.1 0.1 1.2e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF4352 PF11611.3 gi|389846241|ref|YP_006348480.1| - 0.00047 20.3 1.2 0.00068 19.7 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4352) PK PF00224.16 gi|662859380|ref|YP_006348483.2| - 1e-112 376.2 3.4 1.5e-112 375.6 2.3 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|662859380|ref|YP_006348483.2| - 4.2e-34 116.6 2.7 1e-33 115.3 1.9 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|662859380|ref|YP_006348483.2| - 1.4e-11 43.7 0.7 1.3e-10 40.7 0.1 2.9 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|662859380|ref|YP_006348483.2| - 0.0019 17.1 5.1 0.01 14.7 0.8 2.4 1 1 1 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family Cytochrom_B_C PF00032.12 gi|389846245|ref|YP_006348484.1| - 1.5e-08 34.8 2.0 1.5e-08 34.7 0.2 1.9 2 1 1 3 3 3 1 Cytochrome b(C-terminal)/b6/petD Pox_A14 PF05767.7 gi|389846245|ref|YP_006348484.1| - 0.072 13.0 0.2 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 MARVEL PF01284.18 gi|389846245|ref|YP_006348484.1| - 0.14 11.9 5.9 0.35 10.6 4.1 1.7 1 1 0 1 1 1 0 Membrane-associating domain YwiC PF14256.1 gi|389846245|ref|YP_006348484.1| - 0.31 11.1 4.7 0.74 9.9 3.2 1.9 1 1 0 1 1 1 0 YwiC-like protein EamA PF00892.15 gi|389846245|ref|YP_006348484.1| - 0.41 10.6 7.6 0.22 11.5 2.2 2.0 2 0 0 2 2 2 0 EamA-like transporter family DUF4203 PF13886.1 gi|389846245|ref|YP_006348484.1| - 1.4 8.2 6.9 0.41 10.0 1.2 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4203) Bacteriocin_IId PF09221.5 gi|389846248|ref|YP_006348487.1| - 0.039 13.8 3.2 0.053 13.4 2.2 1.3 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like Metal_resist PF13801.1 gi|389846248|ref|YP_006348487.1| - 0.046 13.7 0.1 0.057 13.4 0.0 1.1 1 0 0 1 1 1 0 Heavy-metal resistance CRA PF06589.6 gi|389846248|ref|YP_006348487.1| - 0.12 11.6 0.2 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) tRNA-synt_1g PF09334.6 gi|662859381|ref|YP_006348488.2| - 4.1e-140 466.8 0.0 5.6e-140 466.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|662859381|ref|YP_006348488.2| - 1.6e-21 75.8 0.1 2.8e-21 75.1 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|662859381|ref|YP_006348488.2| - 5.1e-16 57.7 2.3 1.2e-08 33.4 0.2 3.6 4 1 0 4 4 4 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|662859381|ref|YP_006348488.2| - 2.5e-09 36.7 0.0 3e-06 26.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|662859381|ref|YP_006348488.2| - 1.7e-07 31.0 0.2 3.6e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|662859381|ref|YP_006348488.2| - 3.1e-05 22.9 2.0 0.12 11.1 0.1 3.4 2 1 1 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|662859381|ref|YP_006348488.2| - 0.0038 15.9 0.2 3.4 6.2 0.0 3.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) TetR_C_7 PF14246.1 gi|662859381|ref|YP_006348488.2| - 0.035 14.3 0.8 3.9 7.7 0.0 3.4 3 0 0 3 3 3 0 AefR-like transcriptional repressor, C-terminal region DUF2423 PF10338.4 gi|662859381|ref|YP_006348488.2| - 0.12 12.3 0.8 0.29 11.1 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2423) SNARE_assoc PF09335.6 gi|389846250|ref|YP_006348489.1| - 1.2e-08 35.1 3.3 3.3e-08 33.7 2.3 1.7 1 1 0 1 1 1 1 SNARE associated Golgi protein Pyridoxal_deC PF00282.14 gi|389846251|ref|YP_006348490.1| - 2.6e-32 111.6 0.0 4.7e-32 110.8 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|389846251|ref|YP_006348490.1| - 9.7e-14 50.8 0.0 2e-13 49.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.14 gi|389846251|ref|YP_006348490.1| - 0.011 14.1 0.0 0.019 13.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF2471 PF10616.4 gi|389846251|ref|YP_006348490.1| - 0.054 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2471) Abi PF02517.11 gi|389846252|ref|YP_006348491.1| - 1.2e-20 73.4 6.0 1.2e-20 73.4 4.2 2.6 2 1 0 2 2 2 1 CAAX protease self-immunity PPDK_N PF01326.14 gi|389846253|ref|YP_006348492.1| - 2.9e-107 358.5 0.7 5.7e-107 357.5 0.5 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|389846253|ref|YP_006348492.1| - 1.9e-79 266.5 0.1 2.8e-79 266.0 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|389846253|ref|YP_006348492.1| - 4.3e-28 96.6 3.1 1.1e-27 95.3 2.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|389846253|ref|YP_006348492.1| - 0.031 14.0 1.4 1.1 9.0 0.0 3.0 2 1 1 3 3 3 0 PEP-utilising enzyme, N-terminal DnaJ PF00226.26 gi|389846254|ref|YP_006348493.1| - 8.3e-10 38.2 0.0 1.3e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain HTH_24 PF13412.1 gi|389846255|ref|YP_006348494.1| - 1.2e-10 40.6 0.0 2.1e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389846255|ref|YP_006348494.1| - 1.8e-10 40.3 0.6 5.3e-10 38.8 0.1 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|389846255|ref|YP_006348494.1| - 1.9e-07 30.7 0.0 4.4e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389846255|ref|YP_006348494.1| - 4.8e-07 30.0 0.1 2.2e-06 27.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389846255|ref|YP_006348494.1| - 1.7e-05 24.5 0.6 6.2e-05 22.7 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|389846255|ref|YP_006348494.1| - 4.8e-05 23.0 0.0 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|389846255|ref|YP_006348494.1| - 0.00012 21.7 0.1 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|389846255|ref|YP_006348494.1| - 0.00012 21.7 0.0 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF387 PF04079.11 gi|389846255|ref|YP_006348494.1| - 0.00026 20.4 0.1 0.00042 19.7 0.1 1.3 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_IclR PF09339.5 gi|389846255|ref|YP_006348494.1| - 0.0009 18.7 0.1 0.0036 16.8 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389846255|ref|YP_006348494.1| - 0.0013 18.3 0.1 0.0025 17.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|389846255|ref|YP_006348494.1| - 0.0013 18.2 0.1 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|389846255|ref|YP_006348494.1| - 0.0018 17.8 0.0 0.0036 16.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|389846255|ref|YP_006348494.1| - 0.0034 17.4 0.0 0.01 15.9 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|389846255|ref|YP_006348494.1| - 0.0035 16.8 0.1 0.0099 15.4 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|389846255|ref|YP_006348494.1| - 0.0037 16.6 0.2 0.0079 15.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|389846255|ref|YP_006348494.1| - 0.0056 16.2 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_3 PF01381.17 gi|389846255|ref|YP_006348494.1| - 0.0068 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Mnd1 PF03962.10 gi|389846255|ref|YP_006348494.1| - 0.0085 15.7 0.1 0.016 14.8 0.1 1.4 1 1 0 1 1 1 1 Mnd1 family Rio2_N PF09202.6 gi|389846255|ref|YP_006348494.1| - 0.015 15.3 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_13 PF11972.3 gi|389846255|ref|YP_006348494.1| - 0.021 14.6 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HU-DNA_bdg PF14848.1 gi|389846255|ref|YP_006348494.1| - 0.036 13.7 0.1 0.07 12.8 0.1 1.4 1 0 0 1 1 1 0 DNA-binding domain HemN_C PF06969.11 gi|389846255|ref|YP_006348494.1| - 0.058 13.4 0.0 0.21 11.6 0.0 2.0 2 0 0 2 2 1 0 HemN C-terminal domain HTH_28 PF13518.1 gi|389846255|ref|YP_006348494.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.1 gi|389846255|ref|YP_006348494.1| - 0.069 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_29 PF13551.1 gi|389846255|ref|YP_006348494.1| - 0.072 13.2 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.7 gi|389846255|ref|YP_006348494.1| - 0.074 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|389846255|ref|YP_006348494.1| - 0.075 12.6 0.1 0.28 10.7 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|389846255|ref|YP_006348494.1| - 0.093 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.6 gi|389846255|ref|YP_006348494.1| - 0.094 11.9 0.0 0.19 10.9 0.0 1.5 2 0 0 2 2 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.1 gi|389846255|ref|YP_006348494.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|389846255|ref|YP_006348494.1| - 0.12 12.6 0.4 0.46 10.6 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein HTH_12 PF08461.5 gi|389846255|ref|YP_006348494.1| - 0.14 11.9 0.1 0.31 10.8 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Metallophos PF00149.23 gi|389846256|ref|YP_006348495.1| - 7.2e-06 25.5 1.7 1.3e-05 24.6 0.0 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Amino_oxidase PF01593.19 gi|389846257|ref|YP_006348496.1| - 1.4e-43 149.6 2.2 2.7e-42 145.4 1.5 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|389846257|ref|YP_006348496.1| - 2.8e-16 59.4 3.0 2.5e-07 29.9 0.9 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|389846257|ref|YP_006348496.1| - 3.1e-16 59.1 0.3 7.4e-16 57.9 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|389846257|ref|YP_006348496.1| - 1e-10 42.0 0.1 2.7e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389846257|ref|YP_006348496.1| - 3.8e-10 38.8 0.8 8.8e-05 21.1 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|389846257|ref|YP_006348496.1| - 1.8e-08 34.6 1.3 1.5e-05 25.2 0.5 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|389846257|ref|YP_006348496.1| - 6e-08 32.7 1.3 4.6e-05 23.4 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|389846257|ref|YP_006348496.1| - 9.8e-08 31.4 0.9 8.6e-06 25.0 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|389846257|ref|YP_006348496.1| - 7.8e-07 28.2 2.4 1.4e-05 24.1 1.1 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|389846257|ref|YP_006348496.1| - 1.1e-05 24.6 0.2 2e-05 23.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|389846257|ref|YP_006348496.1| - 9.5e-05 22.2 6.9 0.041 13.6 0.3 2.8 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_10 PF13460.1 gi|389846257|ref|YP_006348496.1| - 0.00021 21.3 2.5 0.0071 16.3 0.4 2.4 2 0 0 2 2 2 1 NADH(P)-binding FAD_oxidored PF12831.2 gi|389846257|ref|YP_006348496.1| - 0.00032 19.9 3.7 0.00059 19.0 1.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|389846257|ref|YP_006348496.1| - 0.00033 19.6 3.9 0.037 12.9 0.3 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.17 gi|389846257|ref|YP_006348496.1| - 0.00037 19.4 1.5 0.0021 16.9 0.3 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|389846257|ref|YP_006348496.1| - 0.00042 20.5 0.1 0.015 15.5 0.0 2.6 3 0 0 3 3 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|389846257|ref|YP_006348496.1| - 0.0012 18.4 0.1 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|389846257|ref|YP_006348496.1| - 0.0039 16.8 0.4 0.0086 15.7 0.3 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389846257|ref|YP_006348496.1| - 0.017 15.0 1.2 0.22 11.5 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain FMO-like PF00743.14 gi|389846257|ref|YP_006348496.1| - 0.032 12.4 0.0 0.044 11.9 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like ApbA PF02558.11 gi|389846257|ref|YP_006348496.1| - 0.034 13.5 0.2 0.072 12.5 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|389846257|ref|YP_006348496.1| - 0.055 12.8 1.5 0.92 8.8 0.0 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain GDI PF00996.13 gi|389846257|ref|YP_006348496.1| - 0.056 11.7 0.0 2.9 6.1 0.0 2.0 2 0 0 2 2 2 0 GDP dissociation inhibitor Trp_halogenase PF04820.9 gi|389846257|ref|YP_006348496.1| - 0.074 11.6 4.7 0.13 10.8 0.5 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.15 gi|389846257|ref|YP_006348496.1| - 0.12 12.4 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|389846257|ref|YP_006348496.1| - 0.17 11.7 0.6 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 ThiF family PALP PF00291.20 gi|389846258|ref|YP_006348497.1| - 1e-54 185.8 0.4 1.2e-54 185.6 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Fe_dep_repr_C PF02742.10 gi|389846259|ref|YP_006348498.1| - 7.1e-28 96.1 0.8 1.4e-27 95.1 0.5 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|389846259|ref|YP_006348498.1| - 3.3e-20 71.7 0.2 1e-19 70.2 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|389846259|ref|YP_006348498.1| - 9e-14 51.2 0.5 1.7e-13 50.3 0.1 1.7 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|389846259|ref|YP_006348498.1| - 7e-08 32.0 0.0 2.4e-07 30.3 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|389846259|ref|YP_006348498.1| - 1.1e-07 31.4 0.0 3.3e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|389846259|ref|YP_006348498.1| - 3.5e-05 24.0 0.1 0.00099 19.3 0.0 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain Crp PF00325.15 gi|389846259|ref|YP_006348498.1| - 6.2e-05 22.3 0.0 0.00012 21.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_24 PF13412.1 gi|389846259|ref|YP_006348498.1| - 7.7e-05 22.0 0.0 0.00015 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|389846259|ref|YP_006348498.1| - 8.3e-05 22.3 0.0 0.00022 20.9 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|389846259|ref|YP_006348498.1| - 0.00011 21.7 0.2 0.00054 19.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389846259|ref|YP_006348498.1| - 0.0024 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|389846259|ref|YP_006348498.1| - 0.0099 15.7 0.0 0.02 14.7 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|389846259|ref|YP_006348498.1| - 0.01 15.9 0.0 0.032 14.3 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor HTH_20 PF12840.2 gi|389846259|ref|YP_006348498.1| - 0.013 15.3 0.0 0.052 13.3 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|389846259|ref|YP_006348498.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_15 PF12324.3 gi|389846259|ref|YP_006348498.1| - 0.02 14.5 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_13 PF11972.3 gi|389846259|ref|YP_006348498.1| - 0.022 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|389846259|ref|YP_006348498.1| - 0.029 14.4 0.0 0.073 13.1 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator FeoC PF09012.5 gi|389846259|ref|YP_006348498.1| - 0.033 13.8 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Topoisom_bac PF01131.15 gi|389846259|ref|YP_006348498.1| - 0.036 12.9 0.0 0.046 12.5 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_1 PF00126.22 gi|389846259|ref|YP_006348498.1| - 0.036 13.8 0.0 0.13 12.0 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|389846259|ref|YP_006348498.1| - 0.038 13.6 0.0 0.097 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|389846259|ref|YP_006348498.1| - 0.077 12.7 0.1 0.5 10.1 0.1 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|389846259|ref|YP_006348498.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain UPF0016 PF01169.14 gi|389846260|ref|YP_006348499.1| - 1.7e-23 82.5 13.5 1.1e-14 54.3 1.5 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 LysE PF01810.13 gi|662859382|ref|YP_006348500.2| - 4.4e-26 91.3 11.1 5.6e-25 87.7 7.7 1.9 1 1 0 1 1 1 1 LysE type translocator CAAD PF14159.1 gi|662859382|ref|YP_006348500.2| - 0.37 10.4 3.1 0.33 10.6 0.5 2.1 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase PRA1 PF03208.14 gi|662859382|ref|YP_006348500.2| - 1.5 8.1 8.0 0.56 9.5 0.8 2.2 2 0 0 2 2 2 0 PRA1 family protein DUF900 PF05990.7 gi|389846262|ref|YP_006348501.1| - 1.6e-10 40.7 0.0 2.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) DUF726 PF05277.7 gi|389846262|ref|YP_006348501.1| - 0.0014 17.6 0.0 0.0038 16.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF726) DUF676 PF05057.9 gi|389846262|ref|YP_006348501.1| - 0.075 12.3 0.0 0.25 10.6 0.0 1.7 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Fe-ADH_2 PF13685.1 gi|389846263|ref|YP_006348502.1| - 2.3e-59 200.7 0.2 3.1e-59 200.3 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|389846263|ref|YP_006348502.1| - 5.1e-23 81.2 0.9 8.1e-23 80.6 0.6 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|389846263|ref|YP_006348502.1| - 1.3e-10 40.6 0.0 4.6e-10 38.8 0.0 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF420 PF04238.7 gi|389846264|ref|YP_006348503.1| - 5.7e-40 136.3 8.2 5.7e-40 136.3 5.7 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF420) MASE1 PF05231.9 gi|389846264|ref|YP_006348503.1| - 0.00031 19.8 15.4 0.00037 19.6 10.7 1.0 1 0 0 1 1 1 1 MASE1 DUF2306 PF10067.4 gi|389846264|ref|YP_006348503.1| - 0.006 16.6 9.5 0.014 15.4 1.8 3.0 2 1 2 4 4 4 1 Predicted membrane protein (DUF2306) DUF2427 PF10348.4 gi|389846264|ref|YP_006348503.1| - 0.013 15.0 0.9 0.013 15.0 0.6 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF2427) Orai-1 PF07856.7 gi|389846264|ref|YP_006348503.1| - 0.039 13.5 0.2 0.039 13.5 0.1 2.5 2 1 0 2 2 2 0 Mediator of CRAC channel activity DUF4079 PF13301.1 gi|389846264|ref|YP_006348503.1| - 0.062 13.2 12.2 0.069 13.1 0.3 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF4079) Peptidase_M50 PF02163.17 gi|389846264|ref|YP_006348503.1| - 0.79 8.6 6.3 2.5 6.9 1.0 2.4 2 1 0 2 2 2 0 Peptidase family M50 Cytochrom_B561 PF03188.11 gi|389846264|ref|YP_006348503.1| - 4.6 7.0 9.2 1 9.1 2.7 2.3 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 Glycos_transf_1 PF00534.15 gi|389846265|ref|YP_006348504.1| - 2.1e-16 59.7 0.0 3.6e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389846265|ref|YP_006348504.1| - 1.2e-13 51.4 6.1 1.2e-13 51.4 4.2 2.4 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|389846265|ref|YP_006348504.1| - 4.9e-09 36.1 0.5 1e-08 35.1 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|389846265|ref|YP_006348504.1| - 0.018 14.9 0.0 0.041 13.7 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like Hydrolase PF00702.21 gi|389846265|ref|YP_006348504.1| - 0.021 15.2 0.0 0.03 14.7 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Copper-bind PF00127.15 gi|389846266|ref|YP_006348505.1| - 6.7e-14 51.9 0.0 1.3e-13 51.0 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|389846266|ref|YP_006348505.1| - 0.023 14.6 10.6 0.023 14.6 7.4 3.5 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.5 gi|389846266|ref|YP_006348505.1| - 0.058 13.4 0.8 0.058 13.4 0.6 2.9 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Peptidase_M42 PF05343.9 gi|389846267|ref|YP_006348506.1| - 2.6e-90 302.1 1.8 3e-90 301.9 1.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|389846267|ref|YP_006348506.1| - 2e-13 50.2 0.1 3.2e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|389846267|ref|YP_006348506.1| - 6.3e-05 22.7 0.9 0.00013 21.7 0.0 1.9 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|389846267|ref|YP_006348506.1| - 0.011 14.2 0.0 0.34 9.3 0.0 2.1 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) MTH865 PF07747.6 gi|389846268|ref|YP_006348507.1| - 3.6e-24 84.1 0.1 4.3e-24 83.9 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family PIP49_C PF12260.3 gi|389846269|ref|YP_006348508.1| - 0.047 13.1 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein-kinase domain of FAM69 Peptidase_S9 PF00326.16 gi|389846270|ref|YP_006348509.1| - 1.2e-45 155.3 0.0 1.9e-45 154.6 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|389846270|ref|YP_006348509.1| - 2.9e-13 49.8 0.0 1.2e-08 34.7 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|389846270|ref|YP_006348509.1| - 1.1e-11 44.6 0.0 2.3e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389846270|ref|YP_006348509.1| - 5.5e-10 38.9 0.0 4.1e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family PD40 PF07676.7 gi|389846270|ref|YP_006348509.1| - 5.9e-09 35.4 11.1 8.6e-05 22.1 0.2 6.1 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.2 gi|389846270|ref|YP_006348509.1| - 6.1e-09 36.0 0.8 2.8e-08 33.9 0.6 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|389846270|ref|YP_006348509.1| - 4.7e-06 25.3 0.0 0.00056 18.5 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.6 gi|389846270|ref|YP_006348509.1| - 8.3e-05 22.3 0.0 0.0078 15.9 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|389846270|ref|YP_006348509.1| - 0.00037 20.0 0.0 0.043 13.2 0.0 2.4 2 0 0 2 2 2 1 Putative esterase Abhydrolase_1 PF00561.15 gi|389846270|ref|YP_006348509.1| - 0.00082 18.9 0.1 0.093 12.2 0.1 2.3 1 1 0 2 2 2 1 alpha/beta hydrolase fold Gmad1 PF10647.4 gi|389846270|ref|YP_006348509.1| - 0.0017 17.7 2.2 0.014 14.8 0.6 2.9 1 1 1 2 2 2 1 Lipoprotein LpqB beta-propeller domain Abhydrolase_4 PF08386.5 gi|389846270|ref|YP_006348509.1| - 0.0043 16.9 0.0 0.0088 15.9 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Hydrolase_4 PF12146.3 gi|389846270|ref|YP_006348509.1| - 0.0044 16.8 0.0 0.12 12.2 0.0 2.5 2 0 0 2 2 2 1 Putative lysophospholipase DPPIV_N PF00930.16 gi|389846270|ref|YP_006348509.1| - 0.0076 14.8 0.0 3.3 6.2 0.0 3.8 3 1 0 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.7 gi|389846270|ref|YP_006348509.1| - 0.038 12.5 0.0 0.056 12.0 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Abhydrolase_2 PF02230.11 gi|389846270|ref|YP_006348509.1| - 0.059 12.7 0.0 6.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.8 gi|389846270|ref|YP_006348509.1| - 0.1 12.1 0.1 0.33 10.4 0.1 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold B12-binding PF02310.14 gi|389846271|ref|YP_006348510.1| - 8.1e-21 74.1 0.2 9.3e-21 73.9 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.15 gi|389846271|ref|YP_006348510.1| - 0.1 11.9 0.0 0.21 10.8 0.0 1.5 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family ArgK PF03308.11 gi|662859383|ref|YP_006348511.2| - 2.5e-97 324.8 5.5 3.3e-97 324.4 3.8 1.2 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|662859383|ref|YP_006348511.2| - 1.4e-10 40.8 2.0 1.3e-09 37.7 1.4 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|662859383|ref|YP_006348511.2| - 7.2e-07 28.8 0.4 2.3e-06 27.1 0.3 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|662859383|ref|YP_006348511.2| - 1.9e-06 27.4 0.4 4.1e-06 26.3 0.3 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|662859383|ref|YP_006348511.2| - 5.9e-06 27.1 1.3 1.8e-05 25.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|662859383|ref|YP_006348511.2| - 1.4e-05 25.1 0.3 0.00019 21.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|662859383|ref|YP_006348511.2| - 1.9e-05 24.2 1.9 0.00012 21.6 1.3 2.1 1 1 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|662859383|ref|YP_006348511.2| - 3.3e-05 23.5 0.2 0.00021 20.9 0.0 2.3 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|662859383|ref|YP_006348511.2| - 4e-05 23.1 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|662859383|ref|YP_006348511.2| - 4e-05 23.2 2.7 7.4e-05 22.4 0.2 2.7 2 1 1 3 3 2 1 Part of AAA domain ABC_tran PF00005.22 gi|662859383|ref|YP_006348511.2| - 4.1e-05 23.9 0.1 0.0001 22.5 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_30 PF13604.1 gi|662859383|ref|YP_006348511.2| - 7.4e-05 22.4 0.1 7.4e-05 22.4 0.1 2.2 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|662859383|ref|YP_006348511.2| - 0.00019 21.2 0.1 0.00072 19.3 0.0 2.0 2 0 0 2 2 2 1 NTPase KAP_NTPase PF07693.9 gi|662859383|ref|YP_006348511.2| - 0.00069 18.7 0.0 0.00094 18.2 0.0 1.3 1 0 0 1 1 1 1 KAP family P-loop domain MobB PF03205.9 gi|662859383|ref|YP_006348511.2| - 0.002 17.8 1.7 0.0079 15.8 0.1 2.5 2 1 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|662859383|ref|YP_006348511.2| - 0.0023 18.0 0.1 0.0065 16.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|662859383|ref|YP_006348511.2| - 0.0027 17.2 0.2 0.0063 16.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|662859383|ref|YP_006348511.2| - 0.003 17.8 0.1 0.0099 16.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|662859383|ref|YP_006348511.2| - 0.0037 16.5 0.3 0.012 14.8 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|662859383|ref|YP_006348511.2| - 0.0045 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|662859383|ref|YP_006348511.2| - 0.0089 15.2 0.0 0.025 13.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|662859383|ref|YP_006348511.2| - 0.012 14.7 0.1 0.038 13.0 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.18 gi|662859383|ref|YP_006348511.2| - 0.016 15.1 0.1 0.045 13.7 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.4 gi|662859383|ref|YP_006348511.2| - 0.03 12.9 0.0 0.063 11.8 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.1 gi|662859383|ref|YP_006348511.2| - 0.03 13.7 0.0 0.085 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|662859383|ref|YP_006348511.2| - 0.046 13.6 0.1 0.12 12.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain Thymidylate_kin PF02223.12 gi|662859383|ref|YP_006348511.2| - 0.054 12.8 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_14 PF13173.1 gi|662859383|ref|YP_006348511.2| - 0.057 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|662859383|ref|YP_006348511.2| - 0.06 13.8 0.2 0.19 12.2 0.1 1.9 2 0 0 2 2 1 0 Miro-like protein NB-ARC PF00931.17 gi|662859383|ref|YP_006348511.2| - 0.067 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|662859383|ref|YP_006348511.2| - 0.07 12.2 0.1 0.13 11.4 0.1 1.5 1 0 0 1 1 1 0 KaiC FeoB_N PF02421.13 gi|662859383|ref|YP_006348511.2| - 0.088 12.0 0.1 2.7 7.2 0.0 2.6 3 1 1 4 4 3 0 Ferrous iron transport protein B LpxK PF02606.9 gi|662859383|ref|YP_006348511.2| - 0.089 11.7 0.1 0.18 10.6 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase DUF815 PF05673.8 gi|662859383|ref|YP_006348511.2| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|662859383|ref|YP_006348511.2| - 0.12 12.0 0.2 0.33 10.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_31 PF13614.1 gi|662859383|ref|YP_006348511.2| - 0.17 11.8 0.5 5.3 6.9 0.0 2.9 3 1 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|662859383|ref|YP_006348511.2| - 0.19 10.6 0.6 0.34 9.8 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Abhydrolase_6 PF12697.2 gi|389846273|ref|YP_006348512.1| - 2.3e-30 106.1 1.3 3.1e-30 105.7 0.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389846273|ref|YP_006348512.1| - 8.8e-12 44.9 0.0 1.8e-10 40.7 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|389846273|ref|YP_006348512.1| - 4.1e-05 23.3 0.0 7.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|389846273|ref|YP_006348512.1| - 0.00072 19.1 0.1 0.009 15.5 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF35 PF01796.12 gi|389846274|ref|YP_006348513.1| - 5.9e-12 45.6 1.8 7.6e-12 45.2 1.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|389846274|ref|YP_006348513.1| - 0.00065 19.5 2.8 0.0013 18.5 1.9 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|389846274|ref|YP_006348513.1| - 0.016 14.3 0.1 0.033 13.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|389846274|ref|YP_006348513.1| - 0.038 13.3 0.1 0.077 12.3 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Wyosine_form PF08608.7 gi|389846274|ref|YP_006348513.1| - 0.083 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Wyosine base formation zf-IS66 PF13005.2 gi|389846274|ref|YP_006348513.1| - 0.28 11.1 2.0 0.5 10.3 0.5 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Thiolase_N PF00108.18 gi|389846275|ref|YP_006348514.1| - 5.6e-13 48.4 0.3 2.2e-11 43.2 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389846275|ref|YP_006348514.1| - 4.6e-10 38.9 0.3 9.1e-10 38.0 0.2 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|389846275|ref|YP_006348514.1| - 8.2e-09 35.2 5.3 7.2e-08 32.2 1.0 3.0 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|389846275|ref|YP_006348514.1| - 0.00048 19.9 1.1 0.019 14.8 0.1 2.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain E3_binding PF02817.12 gi|389846275|ref|YP_006348514.1| - 0.15 11.7 1.5 0.16 11.5 0.1 1.9 2 0 0 2 2 2 0 e3 binding domain ACP_syn_III PF08545.5 gi|389846275|ref|YP_006348514.1| - 0.22 11.2 4.0 0.73 9.5 0.2 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M28 PF04389.12 gi|389846276|ref|YP_006348515.1| - 1.1e-28 100.2 0.2 1.5e-28 99.7 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|389846276|ref|YP_006348515.1| - 6.2e-12 45.0 0.0 1.1e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|389846276|ref|YP_006348515.1| - 2.9e-05 23.6 0.5 4.8e-05 22.9 0.4 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|389846276|ref|YP_006348515.1| - 6.5e-05 21.8 0.1 0.00011 21.1 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase NAD_kinase PF01513.16 gi|389846277|ref|YP_006348516.1| - 2.1e-09 36.5 0.0 6.2e-09 35.0 0.0 1.7 2 0 0 2 2 2 1 ATP-NAD kinase YwiC PF14256.1 gi|389846278|ref|YP_006348517.1| - 0.069 13.2 5.2 0.094 12.8 2.7 1.7 1 1 0 1 1 1 0 YwiC-like protein TctB PF07331.6 gi|389846278|ref|YP_006348517.1| - 0.11 12.1 3.4 0.16 11.6 2.4 1.4 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF202 PF02656.10 gi|389846278|ref|YP_006348517.1| - 0.34 11.1 4.3 2 8.7 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) MHYT PF03707.11 gi|389846280|ref|YP_006348519.1| - 9.4 6.4 10.6 16 5.7 0.9 2.2 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat Cytochrom_B_C PF00032.12 gi|389846281|ref|YP_006348520.1| - 4e-08 33.3 0.0 1.1e-07 32.0 0.0 1.7 1 1 1 2 2 2 1 Cytochrome b(C-terminal)/b6/petD EamA PF00892.15 gi|389846281|ref|YP_006348520.1| - 0.013 15.5 1.8 0.013 15.5 1.3 2.0 2 0 0 2 2 2 0 EamA-like transporter family MARVEL PF01284.18 gi|389846281|ref|YP_006348520.1| - 0.093 12.5 3.2 0.16 11.7 2.1 1.5 1 1 0 1 1 1 0 Membrane-associating domain DUF3995 PF13160.1 gi|389846281|ref|YP_006348520.1| - 1.8 8.5 6.8 2.4 8.2 3.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3995) Cytochrom_B_N_2 PF13631.1 gi|389846282|ref|YP_006348521.1| - 4.2e-41 140.5 13.3 1.6e-40 138.6 7.8 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|389846282|ref|YP_006348521.1| - 1.7e-12 47.0 15.1 2.6e-12 46.4 10.5 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|389846282|ref|YP_006348521.1| - 0.0063 15.9 2.9 0.0063 15.9 2.0 2.2 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF3267 PF11667.3 gi|389846282|ref|YP_006348521.1| - 0.045 13.9 0.7 0.045 13.9 0.5 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3267) PepSY_TM PF03929.11 gi|389846282|ref|YP_006348521.1| - 0.052 13.9 0.1 0.052 13.9 0.0 3.9 4 1 0 4 4 4 0 PepSY-associated TM helix DUF1673 PF07895.6 gi|389846283|ref|YP_006348522.1| - 0.0036 16.8 0.0 0.0041 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) Copper-bind PF00127.15 gi|389846284|ref|YP_006348523.1| - 6.4e-15 55.1 0.0 1.2e-14 54.2 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|389846284|ref|YP_006348523.1| - 0.0035 17.2 8.1 0.0035 17.2 5.6 2.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence PepSY_TM_2 PF13703.1 gi|389846286|ref|YP_006348525.1| - 0.084 13.0 0.2 0.084 13.0 0.1 2.9 3 1 1 4 4 4 0 PepSY-associated TM helix Yip1 PF04893.12 gi|389846286|ref|YP_006348525.1| - 1.4 8.3 15.6 3.1 7.2 10.8 1.5 1 1 0 1 1 1 0 Yip1 domain HhH-GPD PF00730.20 gi|389846287|ref|YP_006348526.1| - 1.6e-22 79.8 0.0 2.3e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|389846287|ref|YP_006348526.1| - 2.4e-08 33.2 0.0 5.1e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|389846287|ref|YP_006348526.1| - 0.00011 22.2 2.5 0.0002 21.4 1.7 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Scm3 PF10384.4 gi|389846287|ref|YP_006348526.1| - 0.025 14.0 0.0 0.83 9.1 0.0 2.7 3 0 0 3 3 3 0 Centromere protein Scm3 DUF4252 PF14060.1 gi|389846287|ref|YP_006348526.1| - 0.087 12.3 0.1 0.14 11.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4252) DUF3349 PF11829.3 gi|389846287|ref|YP_006348526.1| - 0.1 13.0 0.1 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) HHH_8 PF14716.1 gi|389846287|ref|YP_006348526.1| - 0.11 12.7 0.1 0.27 11.4 0.0 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|389846287|ref|YP_006348526.1| - 0.13 11.9 0.1 0.83 9.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) AAA PF00004.24 gi|662859384|ref|YP_006348527.2| - 7.2e-46 155.6 0.0 7.2e-46 155.6 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|662859384|ref|YP_006348527.2| - 3.5e-10 40.0 0.4 4.9e-09 36.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|662859384|ref|YP_006348527.2| - 4.6e-08 32.8 0.4 5.4e-07 29.4 0.3 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|662859384|ref|YP_006348527.2| - 6.8e-07 28.5 0.0 1.5e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|662859384|ref|YP_006348527.2| - 1.8e-06 28.0 2.7 4.5e-05 23.5 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|662859384|ref|YP_006348527.2| - 1.9e-06 28.0 1.5 0.00011 22.3 0.0 3.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|662859384|ref|YP_006348527.2| - 4.9e-06 27.3 1.6 1.7e-05 25.6 0.0 2.5 3 1 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|662859384|ref|YP_006348527.2| - 4.7e-05 23.2 0.2 0.0006 19.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|662859384|ref|YP_006348527.2| - 5.7e-05 22.1 0.0 0.00013 20.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|662859384|ref|YP_006348527.2| - 0.00026 20.6 0.9 0.0071 15.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|662859384|ref|YP_006348527.2| - 0.00064 19.4 0.1 0.038 13.6 0.0 2.6 1 1 1 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|662859384|ref|YP_006348527.2| - 0.00076 18.9 0.2 0.0021 17.5 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|662859384|ref|YP_006348527.2| - 0.00095 17.9 1.1 0.0028 16.4 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|662859384|ref|YP_006348527.2| - 0.00098 18.3 0.1 0.0031 16.6 0.1 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|662859384|ref|YP_006348527.2| - 0.0011 18.6 0.1 0.0034 17.1 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|662859384|ref|YP_006348527.2| - 0.0018 17.7 6.3 0.04 13.3 0.1 3.1 2 1 1 3 3 3 1 AAA domain Sigma54_activat PF00158.21 gi|662859384|ref|YP_006348527.2| - 0.0019 17.6 0.1 0.029 13.8 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|662859384|ref|YP_006348527.2| - 0.0021 18.3 1.8 0.015 15.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|662859384|ref|YP_006348527.2| - 0.0025 17.8 0.8 0.0084 16.0 0.0 2.3 2 2 0 2 2 2 1 AAA domain ATG16 PF08614.6 gi|662859384|ref|YP_006348527.2| - 0.0029 17.4 9.6 0.0029 17.4 6.7 2.8 2 1 1 3 3 3 1 Autophagy protein 16 (ATG16) AAA_33 PF13671.1 gi|662859384|ref|YP_006348527.2| - 0.0029 17.5 0.2 0.01 15.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|662859384|ref|YP_006348527.2| - 0.003 17.7 0.0 0.0097 16.0 0.0 1.9 1 0 0 1 1 1 1 RNA helicase Creatininase PF02633.9 gi|662859384|ref|YP_006348527.2| - 0.0037 16.3 0.0 0.0065 15.5 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase Zeta_toxin PF06414.7 gi|662859384|ref|YP_006348527.2| - 0.0047 16.0 0.5 0.015 14.3 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|662859384|ref|YP_006348527.2| - 0.0072 16.3 1.3 0.021 14.8 0.0 2.5 3 1 0 3 3 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|662859384|ref|YP_006348527.2| - 0.0086 15.6 0.3 0.06 12.9 0.0 2.5 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) GrpE PF01025.14 gi|662859384|ref|YP_006348527.2| - 0.012 15.1 10.3 0.012 15.1 7.2 2.2 2 1 0 2 2 2 0 GrpE Arch_ATPase PF01637.13 gi|662859384|ref|YP_006348527.2| - 0.017 14.8 3.2 0.1 12.2 0.0 2.9 2 1 0 2 2 2 0 Archaeal ATPase KaiC PF06745.8 gi|662859384|ref|YP_006348527.2| - 0.021 13.9 6.1 0.25 10.4 0.0 3.4 2 1 1 3 3 3 0 KaiC IncA PF04156.9 gi|662859384|ref|YP_006348527.2| - 0.026 14.1 15.8 0.26 10.8 8.9 2.3 1 1 1 2 2 2 0 IncA protein Parvo_NS1 PF01057.12 gi|662859384|ref|YP_006348527.2| - 0.03 13.1 0.0 0.066 12.0 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 bZIP_1 PF00170.16 gi|662859384|ref|YP_006348527.2| - 0.059 13.3 11.9 0.57 10.1 3.1 2.8 1 1 1 2 2 2 0 bZIP transcription factor NB-ARC PF00931.17 gi|662859384|ref|YP_006348527.2| - 0.1 11.4 0.0 0.1 11.4 0.0 2.1 3 0 0 3 3 2 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|662859384|ref|YP_006348527.2| - 0.12 11.8 0.3 0.66 9.4 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.1 gi|662859384|ref|YP_006348527.2| - 0.25 10.8 6.6 0.27 10.7 0.0 2.4 1 1 0 2 2 2 0 AAA domain Fmp27_WPPW PF10359.4 gi|662859384|ref|YP_006348527.2| - 0.32 9.3 7.1 0.51 8.6 4.9 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran PF00005.22 gi|662859384|ref|YP_006348527.2| - 0.43 10.8 0.0 0.43 10.8 0.0 2.8 2 1 0 2 2 1 0 ABC transporter DUF904 PF06005.7 gi|662859384|ref|YP_006348527.2| - 0.45 10.8 12.7 1.9 8.8 8.2 2.5 2 1 0 2 2 1 0 Protein of unknown function (DUF904) NTPase_1 PF03266.10 gi|662859384|ref|YP_006348527.2| - 0.47 10.1 0.1 0.47 10.1 0.0 3.7 2 2 1 4 4 4 0 NTPase TMF_DNA_bd PF12329.3 gi|662859384|ref|YP_006348527.2| - 0.51 10.1 11.0 2 8.2 7.6 2.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding AAA_10 PF12846.2 gi|662859384|ref|YP_006348527.2| - 1.5 8.2 5.1 2.3 7.5 0.0 3.0 3 1 0 3 3 3 0 AAA-like domain ADIP PF11559.3 gi|662859384|ref|YP_006348527.2| - 2.8 7.8 14.3 0.22 11.4 6.0 1.8 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding AAA_23 PF13476.1 gi|662859384|ref|YP_006348527.2| - 3 8.1 0.0 3 8.1 0.0 2.6 2 1 0 2 2 1 0 AAA domain AAA_13 PF13166.1 gi|662859384|ref|YP_006348527.2| - 5.8 5.2 13.8 26 3.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain HTH_24 PF13412.1 gi|389846289|ref|YP_006348528.1| - 5.5e-06 25.6 0.0 8.1e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389846289|ref|YP_006348528.1| - 6.8e-05 22.4 0.1 9.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|389846289|ref|YP_006348528.1| - 9.5e-05 22.0 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|389846289|ref|YP_006348528.1| - 0.00022 20.5 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|389846289|ref|YP_006348528.1| - 0.00074 19.1 0.0 0.00098 18.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|389846289|ref|YP_006348528.1| - 0.0021 17.4 0.0 0.0051 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|389846289|ref|YP_006348528.1| - 0.006 16.3 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|389846289|ref|YP_006348528.1| - 0.0086 16.0 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389846289|ref|YP_006348528.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|389846289|ref|YP_006348528.1| - 0.012 15.3 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|389846289|ref|YP_006348528.1| - 0.016 15.3 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|389846289|ref|YP_006348528.1| - 0.039 13.5 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|389846289|ref|YP_006348528.1| - 0.047 13.2 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.1 gi|389846289|ref|YP_006348528.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Rhomboid_SP PF12595.3 gi|389846290|ref|YP_006348529.1| - 0.19 11.2 2.2 0.17 11.4 1.5 1.3 1 1 0 1 1 1 0 Rhomboid serine protease Metallophos_2 PF12850.2 gi|389846291|ref|YP_006348530.1| - 5.8e-15 55.4 0.1 9.9e-15 54.7 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|389846291|ref|YP_006348530.1| - 1.6e-11 43.9 1.0 2.9e-11 43.1 0.7 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PaaX_C PF08223.6 gi|389846291|ref|YP_006348530.1| - 0.057 13.1 1.3 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 PaaX-like protein C-terminal domain AAA_23 PF13476.1 gi|389846292|ref|YP_006348531.1| - 7.5e-16 59.0 66.4 0.00017 21.9 46.0 6.0 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|389846292|ref|YP_006348531.1| - 8.9e-13 48.8 0.4 4.5e-07 30.1 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.1 gi|389846292|ref|YP_006348531.1| - 1.2e-10 40.5 55.2 0.036 12.5 8.3 5.3 2 1 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|389846292|ref|YP_006348531.1| - 1.3e-10 40.8 45.4 1.8e-09 37.1 31.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|389846292|ref|YP_006348531.1| - 8.6e-09 34.9 0.0 8.3e-05 21.8 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|389846292|ref|YP_006348531.1| - 3.6e-06 26.4 0.0 7e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.3 gi|389846292|ref|YP_006348531.1| - 3.9e-05 21.2 90.2 0.063 10.6 28.8 3.4 3 0 0 3 3 3 3 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.7 gi|389846292|ref|YP_006348531.1| - 4.1e-05 23.4 19.1 0.027 14.3 0.7 6.2 4 1 3 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|389846292|ref|YP_006348531.1| - 0.012 14.5 75.8 0.01 14.7 9.0 5.3 1 1 3 5 5 5 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|389846292|ref|YP_006348531.1| - 0.02 14.4 111.2 0.19 11.3 13.4 5.4 3 2 2 5 5 5 0 IncA protein DUF489 PF04356.7 gi|389846292|ref|YP_006348531.1| - 0.032 13.8 1.8 0.96 9.0 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF489) AAA_27 PF13514.1 gi|389846292|ref|YP_006348531.1| - 0.12 9.9 114.7 18 2.8 57.4 3.9 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|389846292|ref|YP_006348531.1| - 0.18 12.0 0.0 0.18 12.0 0.0 5.2 3 2 0 3 3 3 0 ABC transporter NPV_P10 PF05531.7 gi|389846292|ref|YP_006348531.1| - 1.1 9.6 27.7 1.2 9.4 0.2 6.8 5 2 0 6 6 6 0 Nucleopolyhedrovirus P10 protein DASH_Dam1 PF08653.5 gi|389846292|ref|YP_006348531.1| - 1.1 9.0 7.4 13 5.6 0.1 5.1 5 0 0 5 5 5 0 DASH complex subunit Dam1 Reo_sigmaC PF04582.7 gi|389846292|ref|YP_006348531.1| - 2.8 7.0 31.7 0.22 10.6 3.2 4.8 2 2 4 6 6 6 0 Reovirus sigma C capsid protein DNA_pol_B PF00136.16 gi|389846296|ref|YP_006348535.1| - 3.4e-63 214.0 0.0 5.7e-63 213.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|389846296|ref|YP_006348535.1| - 9.1e-28 97.0 0.0 5e-20 71.6 0.0 2.5 2 1 0 2 2 2 2 DNA polymerase family B, exonuclease domain Hom_end_hint PF05203.11 gi|389846296|ref|YP_006348535.1| - 2e-08 34.2 0.9 5.1e-08 32.9 0.2 1.9 2 0 0 2 2 2 1 Hom_end-associated Hint LAGLIDADG_3 PF14528.1 gi|389846296|ref|YP_006348535.1| - 6.1e-06 26.3 0.1 0.015 15.5 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint PF01079.15 gi|389846296|ref|YP_006348535.1| - 1.5e-05 24.3 0.0 2.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Hint module Hom_end PF05204.9 gi|389846296|ref|YP_006348535.1| - 6.5e-05 22.8 0.0 0.029 14.3 0.0 2.5 2 0 0 2 2 2 2 Homing endonuclease Intein_splicing PF14890.1 gi|389846296|ref|YP_006348535.1| - 0.0037 16.2 0.1 0.076 11.8 0.1 2.4 2 0 0 2 2 2 1 Intein splicing domain Hint_2 PF13403.1 gi|389846296|ref|YP_006348535.1| - 0.17 11.8 0.2 0.41 10.5 0.1 1.7 1 0 0 1 1 1 0 Hint domain ABC_tran PF00005.22 gi|389846297|ref|YP_006348536.1| - 2.2e-15 57.1 0.0 7.5e-15 55.4 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|389846297|ref|YP_006348536.1| - 7.7e-06 25.2 1.1 0.021 14.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|389846297|ref|YP_006348536.1| - 3.3e-05 24.0 0.3 0.0012 18.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389846297|ref|YP_006348536.1| - 0.00039 21.2 1.0 0.009 16.8 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|389846297|ref|YP_006348536.1| - 0.0016 17.8 0.1 0.0031 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|389846297|ref|YP_006348536.1| - 0.0017 18.5 0.1 1.3 9.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389846297|ref|YP_006348536.1| - 0.0059 16.3 0.1 1.4 8.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|389846297|ref|YP_006348536.1| - 0.0081 14.6 0.0 0.014 13.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|389846297|ref|YP_006348536.1| - 0.015 15.5 0.9 0.14 12.4 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|389846297|ref|YP_006348536.1| - 0.035 14.2 0.1 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|389846297|ref|YP_006348536.1| - 0.068 13.0 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|389846297|ref|YP_006348536.1| - 0.16 11.3 0.0 2.1 7.7 0.0 2.0 2 0 0 2 2 2 0 MutS domain V UPF0051 PF01458.12 gi|389846298|ref|YP_006348537.1| - 1.3e-70 237.4 0.9 2.1e-70 236.7 0.7 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF3126 PF11324.3 gi|389846298|ref|YP_006348537.1| - 0.048 13.3 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3126) UPF0051 PF01458.12 gi|389846299|ref|YP_006348538.1| - 8.3e-66 221.7 1.0 1e-65 221.4 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Rubrerythrin PF02915.12 gi|662859385|ref|YP_006348539.2| - 9.5e-07 29.2 2.8 1.3e-06 28.7 1.9 1.3 1 1 0 1 1 1 1 Rubrerythrin DUF445 PF04286.7 gi|662859385|ref|YP_006348539.2| - 0.0073 15.8 0.2 0.0084 15.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Exonuc_VII_S PF02609.11 gi|662859385|ref|YP_006348539.2| - 0.026 14.2 0.1 0.088 12.5 0.1 2.0 1 0 0 1 1 1 0 Exonuclease VII small subunit DUF892 PF05974.7 gi|662859385|ref|YP_006348539.2| - 0.059 13.1 3.7 0.41 10.4 2.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF892) AAA_16 PF13191.1 gi|662859385|ref|YP_006348539.2| - 0.23 11.4 2.8 0.24 11.3 1.3 1.4 2 0 0 2 2 2 0 AAA ATPase domain Fe_dep_repress PF01325.14 gi|389846301|ref|YP_006348540.1| - 4.9e-16 58.4 0.3 1.1e-15 57.2 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|389846301|ref|YP_006348540.1| - 3.7e-10 39.3 0.0 8e-10 38.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|389846301|ref|YP_006348540.1| - 0.00021 20.9 0.0 0.00034 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389846301|ref|YP_006348540.1| - 0.00061 20.0 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|389846301|ref|YP_006348540.1| - 0.0011 18.6 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389846301|ref|YP_006348540.1| - 0.0015 18.1 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|389846301|ref|YP_006348540.1| - 0.0044 16.7 0.0 0.0088 15.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|389846301|ref|YP_006348540.1| - 0.039 13.4 0.0 0.095 12.1 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|389846301|ref|YP_006348540.1| - 0.12 11.9 0.0 0.17 11.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|389846301|ref|YP_006348540.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|389846301|ref|YP_006348540.1| - 0.14 12.2 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Herpes_LMP2 PF07415.6 gi|389846303|ref|YP_006348542.1| - 0.32 9.5 2.0 0.4 9.1 1.4 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein MRI PF15325.1 gi|389846303|ref|YP_006348542.1| - 4.8 8.1 7.2 3.7 8.5 3.9 1.7 1 1 0 1 1 1 0 Modulator of retrovirus infection Beta_helix PF13229.1 gi|389846304|ref|YP_006348543.1| - 0.0022 17.7 1.9 0.017 14.8 0.0 2.6 2 1 0 2 2 2 1 Right handed beta helix region SBF PF01758.11 gi|389846306|ref|YP_006348545.1| - 2.2e-11 43.4 13.8 3.5e-11 42.8 9.6 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|389846306|ref|YP_006348545.1| - 8.7e-10 38.1 15.7 1.1e-09 37.8 10.9 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF3177 PF11375.3 gi|389846306|ref|YP_006348545.1| - 0.018 14.5 1.8 0.034 13.6 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) Thiolase_N PF00108.18 gi|389846306|ref|YP_006348545.1| - 0.16 10.9 0.6 0.27 10.1 0.4 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Methyltransf_21 PF05050.7 gi|389846307|ref|YP_006348546.1| - 3.4e-27 95.4 0.0 4.5e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|389846307|ref|YP_006348546.1| - 1.5e-11 44.8 0.0 2.3e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|389846307|ref|YP_006348546.1| - 3e-09 36.3 0.0 3.6e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|389846307|ref|YP_006348546.1| - 1.7e-05 24.5 0.0 2.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|389846307|ref|YP_006348546.1| - 0.00012 21.5 0.1 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|389846307|ref|YP_006348546.1| - 0.00024 20.7 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|389846307|ref|YP_006348546.1| - 0.0006 18.9 0.0 0.00086 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|389846307|ref|YP_006348546.1| - 0.0012 18.8 0.1 0.0019 18.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|389846307|ref|YP_006348546.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|389846307|ref|YP_006348546.1| - 0.019 14.9 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|389846307|ref|YP_006348546.1| - 0.035 13.8 0.0 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.11 gi|389846307|ref|YP_006348546.1| - 0.052 12.4 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_12 PF08242.7 gi|389846307|ref|YP_006348546.1| - 0.06 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF3179 PF11376.3 gi|389846308|ref|YP_006348547.1| - 1.6e-63 214.3 0.0 2e-63 214.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) tRNA-synt_2c PF01411.14 gi|662859386|ref|YP_006348548.2| - 7.3e-12 44.3 0.0 9.4e-12 43.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|662859386|ref|YP_006348548.2| - 9.5e-10 38.2 0.4 1.5e-09 37.5 0.3 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Big_4 PF07532.6 gi|662859386|ref|YP_006348548.2| - 0.0035 16.8 0.0 9 5.9 0.0 4.1 3 2 0 3 3 3 1 Bacterial Ig-like domain (group 4) HD PF01966.17 gi|389846310|ref|YP_006348549.1| - 1.4e-16 60.6 3.0 3.1e-16 59.4 0.8 2.0 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|389846310|ref|YP_006348549.1| - 0.017 14.8 0.1 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 HD domain DUF2267 PF10025.4 gi|389846310|ref|YP_006348549.1| - 0.042 13.9 0.6 0.35 10.9 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) XylR_N PF06505.6 gi|389846310|ref|YP_006348549.1| - 0.047 13.1 0.1 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 Activator of aromatic catabolism Epimerase PF01370.16 gi|389846311|ref|YP_006348550.1| - 5.1e-33 114.4 0.1 1.4e-30 106.4 0.1 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389846311|ref|YP_006348550.1| - 1.7e-10 41.1 0.0 3.5e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|389846311|ref|YP_006348550.1| - 5.3e-09 35.1 0.0 0.00055 18.7 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|389846311|ref|YP_006348550.1| - 6.9e-07 28.4 0.0 0.01 14.7 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|389846311|ref|YP_006348550.1| - 6.5e-06 25.2 0.0 0.0041 16.0 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|389846311|ref|YP_006348550.1| - 0.018 14.9 0.0 0.065 13.1 0.0 2.0 1 1 1 2 2 2 0 short chain dehydrogenase NmrA PF05368.8 gi|389846311|ref|YP_006348550.1| - 0.098 11.8 0.0 0.24 10.6 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family Apolipo_F PF15148.1 gi|389846312|ref|YP_006348551.1| - 0.033 13.5 0.0 0.035 13.3 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein F PRA-PH PF01503.12 gi|389846312|ref|YP_006348551.1| - 0.29 11.4 2.7 0.46 10.7 1.9 1.5 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|389846312|ref|YP_006348551.1| - 0.65 9.9 5.4 4.3 7.3 3.7 2.1 1 1 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain Glu_synthase PF01645.12 gi|662859387|ref|YP_006348552.2| - 1.2e-152 508.1 0.3 2.1e-151 504.0 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|662859387|ref|YP_006348552.2| - 2.3e-124 414.7 0.0 5.4e-124 413.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|662859387|ref|YP_006348552.2| - 2.4e-108 361.7 0.0 4.2e-108 360.9 0.0 1.4 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|662859387|ref|YP_006348552.2| - 2.6e-58 196.3 7.8 5e-58 195.4 5.4 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|662859387|ref|YP_006348552.2| - 0.0026 16.6 4.7 0.0096 14.7 1.0 2.8 3 0 0 3 3 3 1 FMN-dependent dehydrogenase GATase_6 PF13522.1 gi|662859387|ref|YP_006348552.2| - 0.0094 15.9 0.4 0.4 10.6 0.0 3.4 4 0 0 4 4 4 1 Glutamine amidotransferase domain HGTP_anticodon PF03129.15 gi|389846314|ref|YP_006348553.1| - 7.9e-23 80.2 0.3 1.6e-22 79.2 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|389846314|ref|YP_006348553.1| - 3.1e-20 71.8 0.3 7e-20 70.7 0.2 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|389846314|ref|YP_006348553.1| - 1.3e-17 63.9 0.0 2.7e-17 62.9 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) YebG PF07130.7 gi|389846314|ref|YP_006348553.1| - 0.052 13.2 0.2 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 YebG protein Beta-Casp PF10996.3 gi|389846317|ref|YP_006348556.1| - 6.6e-32 110.1 0.0 1.3e-31 109.1 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|389846317|ref|YP_006348556.1| - 2.9e-23 82.5 2.5 6e-23 81.5 1.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|389846317|ref|YP_006348556.1| - 2.1e-14 53.0 0.0 6.1e-14 51.5 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|389846317|ref|YP_006348556.1| - 1.7e-10 40.7 0.1 4.1e-10 39.5 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|389846317|ref|YP_006348556.1| - 1.3e-08 34.2 0.2 3.1e-06 26.6 0.0 2.7 2 1 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|389846317|ref|YP_006348556.1| - 5.5e-05 22.7 0.1 0.0003 20.3 0.1 2.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|389846317|ref|YP_006348556.1| - 0.00022 20.9 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|389846317|ref|YP_006348556.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|389846317|ref|YP_006348556.1| - 0.097 12.3 1.4 0.15 11.7 0.1 2.0 2 0 0 2 2 2 0 KH domain DHquinase_II PF01220.14 gi|389846317|ref|YP_006348556.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Dehydroquinase class II DUF1628 PF07790.6 gi|662859388|ref|YP_006348557.2| - 2.7e-05 24.8 7.2 7.2e-05 23.4 3.5 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) MGS PF02142.17 gi|389846319|ref|YP_006348558.1| - 1.7e-13 50.3 0.0 2e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain HhH-GPD PF00730.20 gi|389846321|ref|YP_006348560.1| - 1.5e-19 70.3 0.0 2e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|389846321|ref|YP_006348560.1| - 0.00072 19.6 3.9 0.0017 18.4 2.7 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|389846321|ref|YP_006348560.1| - 0.013 15.1 0.0 0.042 13.5 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|389846321|ref|YP_006348560.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) PRiA4_ORF3 PF07929.6 gi|389846321|ref|YP_006348560.1| - 0.11 11.8 0.1 0.3 10.4 0.1 1.7 1 0 0 1 1 1 0 Plasmid pRiA4b ORF-3-like protein DUF371 PF04027.8 gi|662859389|ref|YP_006348561.2| - 1.3e-47 160.7 0.1 1.4e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF948 PF06103.6 gi|389846323|ref|YP_006348562.1| - 0.72 9.7 17.7 0.58 10.0 0.9 3.9 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Peptidase_S49 PF01343.13 gi|389846324|ref|YP_006348563.1| - 5.3e-43 146.4 0.0 7.9e-43 145.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|389846324|ref|YP_006348563.1| - 0.0068 16.0 0.1 0.23 11.1 0.0 2.2 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|389846324|ref|YP_006348563.1| - 0.0095 14.7 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|389846324|ref|YP_006348563.1| - 0.39 9.8 2.2 4.4 6.3 0.0 2.6 3 0 0 3 3 3 0 Enoyl-CoA hydratase/isomerase family IncA PF04156.9 gi|389846324|ref|YP_006348563.1| - 2.4 7.7 4.3 4.7 6.7 3.0 1.4 1 0 0 1 1 1 0 IncA protein DUF373 PF04123.8 gi|389846325|ref|YP_006348564.1| - 1.1e-113 379.7 4.9 1.3e-113 379.5 3.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3087 PF11286.3 gi|389846325|ref|YP_006348564.1| - 0.16 11.1 1.0 2.9 7.0 0.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) DUF1469 PF07332.6 gi|662859390|ref|YP_006348565.2| - 0.15 11.8 5.6 0.17 11.5 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF872 PF05915.7 gi|662859390|ref|YP_006348565.2| - 0.3 10.9 1.8 0.37 10.6 1.3 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) IncA PF04156.9 gi|662859390|ref|YP_006348565.2| - 0.46 10.0 6.5 0.56 9.7 4.5 1.0 1 0 0 1 1 1 0 IncA protein PIRT PF15099.1 gi|662859390|ref|YP_006348565.2| - 1.1 8.5 4.4 1.3 8.2 3.1 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF2613 PF11021.3 gi|662859390|ref|YP_006348565.2| - 1.6 8.4 6.5 0.72 9.6 3.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2613) CcoS PF03597.10 gi|662859390|ref|YP_006348565.2| - 3.8 7.0 4.8 2.8 7.4 0.1 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Aldo_ket_red PF00248.16 gi|389846327|ref|YP_006348566.1| - 9.5e-69 231.3 0.1 1.2e-68 231.0 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.15 gi|389846327|ref|YP_006348566.1| - 0.035 14.0 0.1 5.7 6.9 0.0 3.0 3 0 0 3 3 3 0 Transposase COX5B PF01215.14 gi|389846328|ref|YP_006348567.1| - 0.0036 16.9 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit Vb Elf1 PF05129.8 gi|389846328|ref|YP_006348567.1| - 0.012 15.3 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TFIIS_C PF01096.13 gi|389846328|ref|YP_006348567.1| - 0.021 14.4 0.5 6.9 6.3 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|389846328|ref|YP_006348567.1| - 0.026 13.7 1.7 0.065 12.4 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|389846328|ref|YP_006348567.1| - 0.039 13.6 0.2 8.5 6.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|389846328|ref|YP_006348567.1| - 0.057 13.0 1.3 6.4 6.4 0.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|389846328|ref|YP_006348567.1| - 0.16 11.9 2.2 0.43 10.5 1.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|389846328|ref|YP_006348567.1| - 0.21 11.0 2.0 0.79 9.2 1.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|389846328|ref|YP_006348567.1| - 0.92 8.8 4.5 2.9 7.3 3.2 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|389846328|ref|YP_006348567.1| - 1.3 8.7 4.5 9.7 5.9 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger TPP_enzyme_C PF02775.16 gi|389846330|ref|YP_006348569.1| - 7.3e-32 110.0 0.4 1.1e-31 109.4 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|389846330|ref|YP_006348569.1| - 4.5e-17 61.7 0.7 8.9e-17 60.7 0.5 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|389846331|ref|YP_006348570.1| - 2.5e-59 200.6 0.3 3.6e-59 200.0 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|389846331|ref|YP_006348570.1| - 4.2e-42 143.9 0.3 8.8e-42 142.9 0.2 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|389846331|ref|YP_006348570.1| - 4e-06 26.4 0.8 7e-06 25.6 0.5 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|389846331|ref|YP_006348570.1| - 0.017 15.0 0.1 0.08 12.8 0.0 2.1 2 0 0 2 2 2 0 Transketolase, C-terminal domain Urotensin_II PF02083.10 gi|389846331|ref|YP_006348570.1| - 0.17 11.2 0.4 0.32 10.4 0.3 1.5 1 0 0 1 1 1 0 Urotensin II FAD_binding_6 PF00970.19 gi|389846332|ref|YP_006348571.1| - 1.2e-12 47.7 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain ABC2_membrane_2 PF12679.2 gi|389846333|ref|YP_006348572.1| - 2.5e-08 33.1 23.1 4.9e-08 32.1 16.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|389846333|ref|YP_006348572.1| - 1.3e-05 24.4 8.4 2.4e-05 23.6 5.8 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|389846333|ref|YP_006348572.1| - 5.3e-05 22.4 12.1 0.0001 21.5 8.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389846333|ref|YP_006348572.1| - 0.00042 19.4 10.8 0.00042 19.4 7.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389846334|ref|YP_006348573.1| - 4.9e-27 94.9 0.0 8.1e-27 94.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389846334|ref|YP_006348573.1| - 3.9e-16 59.8 0.1 1.5e-11 44.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389846334|ref|YP_006348573.1| - 5.6e-05 22.7 0.0 0.12 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|389846334|ref|YP_006348573.1| - 7.6e-05 22.8 0.0 0.00027 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389846334|ref|YP_006348573.1| - 9.1e-05 21.9 0.2 0.00019 20.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389846334|ref|YP_006348573.1| - 0.00013 22.0 0.1 0.00021 21.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|389846334|ref|YP_006348573.1| - 0.00037 20.8 0.0 0.00053 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389846334|ref|YP_006348573.1| - 0.0007 18.8 0.0 0.042 13.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|389846334|ref|YP_006348573.1| - 0.0012 18.7 0.0 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|389846334|ref|YP_006348573.1| - 0.0023 17.1 0.0 0.0044 16.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|389846334|ref|YP_006348573.1| - 0.0054 17.5 0.0 0.0085 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|389846334|ref|YP_006348573.1| - 0.0063 16.4 0.2 0.027 14.4 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|389846334|ref|YP_006348573.1| - 0.0079 15.2 0.0 0.75 8.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|389846334|ref|YP_006348573.1| - 0.014 15.1 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|389846334|ref|YP_006348573.1| - 0.017 14.5 0.2 0.027 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|389846334|ref|YP_006348573.1| - 0.022 13.2 0.0 0.2 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|389846334|ref|YP_006348573.1| - 0.033 14.1 0.0 0.57 10.1 0.0 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|389846334|ref|YP_006348573.1| - 0.034 13.7 0.0 0.12 11.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389846334|ref|YP_006348573.1| - 0.05 13.2 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.10 gi|389846334|ref|YP_006348573.1| - 0.087 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|389846334|ref|YP_006348573.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|389846334|ref|YP_006348573.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 2 0 0 2 2 1 0 AAA domain cobW PF02492.14 gi|389846334|ref|YP_006348573.1| - 0.13 11.7 0.1 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|389846334|ref|YP_006348573.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NosD PF05048.8 gi|662859391|ref|YP_006348574.2| - 1.5e-33 115.9 1.5 9.9e-31 106.7 0.4 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|662859391|ref|YP_006348574.2| - 3.5e-15 56.0 12.5 2.8e-11 43.4 4.6 2.7 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|662859391|ref|YP_006348574.2| - 1.8e-12 47.8 6.3 1e-10 42.1 4.4 2.3 1 1 0 1 1 1 1 Pectate lyase superfamily protein NosL PF05573.7 gi|662859391|ref|YP_006348574.2| - 4.6e-12 45.8 0.1 9.6e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 NosL MM_CoA_mutase PF01642.17 gi|389846336|ref|YP_006348575.1| - 1.2e-189 630.8 0.2 1.3e-189 630.6 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.6 gi|389846336|ref|YP_006348575.1| - 0.035 12.2 0.0 0.052 11.7 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) Snf7 PF03357.16 gi|389846336|ref|YP_006348575.1| - 4.1 6.7 9.1 11 5.3 2.5 2.3 2 0 0 2 2 2 0 Snf7 CRISPR_assoc PF08798.6 gi|389846337|ref|YP_006348576.1| - 0.022 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 CRISPR associated protein DUF4135 PF13575.1 gi|389846338|ref|YP_006348577.1| - 6e-76 255.8 0.0 8.3e-76 255.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.8 gi|389846338|ref|YP_006348577.1| - 2.1e-58 197.6 0.0 2.7e-58 197.2 0.0 1.1 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein DUF1680 PF07944.7 gi|389846338|ref|YP_006348577.1| - 0.36 9.0 0.0 1.3 7.1 0.0 1.8 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) AMP-binding PF00501.23 gi|389846339|ref|YP_006348578.1| - 5.5e-93 311.6 0.1 6.5e-93 311.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389846339|ref|YP_006348578.1| - 5e-18 65.8 0.9 1e-17 64.8 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TAT_signal PF10518.4 gi|662859392|ref|YP_006348580.2| - 1.5 9.0 7.0 6.6 7.0 4.8 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_6 PF13458.1 gi|389846342|ref|YP_006348581.1| - 9.7e-09 35.0 0.0 1.1e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Usp PF00582.21 gi|389846343|ref|YP_006348582.1| - 1.1e-21 77.5 0.3 1.2e-21 77.3 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family FtsX PF02687.16 gi|662859393|ref|YP_006348583.2| - 2.5 7.8 6.5 3.2 7.5 4.5 1.1 1 0 0 1 1 1 0 FtsX-like permease family PepSY_TM PF03929.11 gi|389846345|ref|YP_006348584.1| - 0.029 14.7 0.1 0.029 14.7 0.0 1.1 1 0 0 1 1 1 0 PepSY-associated TM helix Podoplanin PF05808.6 gi|389846345|ref|YP_006348584.1| - 0.087 12.3 0.0 0.087 12.3 0.0 1.1 1 0 0 1 1 1 0 Podoplanin PepSY_TM_3 PF13706.1 gi|389846345|ref|YP_006348584.1| - 0.36 10.2 7.9 0.45 9.9 5.4 1.1 1 0 0 1 1 1 0 PepSY-associated TM helix MtrF PF09472.5 gi|389846345|ref|YP_006348584.1| - 0.4 9.9 2.9 0.52 9.5 2.0 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) COX1 PF00115.15 gi|662859394|ref|YP_006348585.2| - 1.6e-154 514.8 58.1 1.6e-154 514.8 40.3 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Aph-1 PF06105.7 gi|389846347|ref|YP_006348586.1| - 0.049 12.8 0.3 0.049 12.8 0.2 1.6 1 1 0 1 1 1 0 Aph-1 protein DUF3007 PF11460.3 gi|389846347|ref|YP_006348586.1| - 0.42 10.7 1.7 0.67 10.0 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Cyt_c_ox_IV PF12270.3 gi|389846348|ref|YP_006348587.1| - 0.018 14.7 0.6 0.018 14.7 0.4 1.9 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV MMR_HSR1 PF01926.18 gi|389846350|ref|YP_006348589.1| - 1.6e-20 73.1 0.0 3e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|389846350|ref|YP_006348589.1| - 1.5e-14 53.5 0.3 1.4e-12 47.1 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|389846350|ref|YP_006348589.1| - 1e-13 50.8 0.1 2.2e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|389846350|ref|YP_006348589.1| - 8.2e-05 22.4 0.0 0.071 12.9 0.0 2.5 2 0 0 2 2 2 2 Dynamin family ArgK PF03308.11 gi|389846350|ref|YP_006348589.1| - 0.0002 20.2 1.1 0.0034 16.1 0.1 2.6 2 1 0 2 2 2 1 ArgK protein GTP_EFTU PF00009.22 gi|389846350|ref|YP_006348589.1| - 0.00048 19.6 0.1 0.043 13.2 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|389846350|ref|YP_006348589.1| - 0.0011 18.1 0.0 0.0025 16.9 0.0 1.5 2 0 0 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|389846350|ref|YP_006348589.1| - 0.0019 17.4 0.1 0.007 15.5 0.0 2.0 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|389846350|ref|YP_006348589.1| - 0.002 18.5 0.0 0.0068 16.8 0.0 1.9 2 0 0 2 2 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|389846350|ref|YP_006348589.1| - 0.0024 17.4 0.0 0.78 9.2 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|389846350|ref|YP_006348589.1| - 0.0035 17.6 0.0 0.057 13.7 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|389846350|ref|YP_006348589.1| - 0.0092 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|389846350|ref|YP_006348589.1| - 0.013 15.4 0.0 0.037 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|389846350|ref|YP_006348589.1| - 0.015 14.5 0.1 0.12 11.5 0.0 2.3 2 1 0 2 2 2 0 ADP-ribosylation factor family cobW PF02492.14 gi|389846350|ref|YP_006348589.1| - 0.019 14.4 0.2 2 7.8 0.0 2.5 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ThiS PF02597.15 gi|389846350|ref|YP_006348589.1| - 0.022 15.1 0.3 0.57 10.6 0.0 3.1 3 1 0 3 3 2 0 ThiS family PduV-EutP PF10662.4 gi|389846350|ref|YP_006348589.1| - 0.04 13.4 0.0 1.6 8.2 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|389846350|ref|YP_006348589.1| - 0.051 13.1 0.4 0.13 11.8 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|389846350|ref|YP_006348589.1| - 0.068 13.9 2.3 0.48 11.2 0.0 3.1 3 2 0 3 3 3 0 AAA domain MobB PF03205.9 gi|389846350|ref|YP_006348589.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3902 PF13042.1 gi|389846351|ref|YP_006348590.1| - 0.013 14.8 0.4 0.013 14.8 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3902) MatE PF01554.13 gi|389846352|ref|YP_006348591.1| - 1.6e-41 141.6 28.4 8.8e-23 80.6 7.4 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|389846352|ref|YP_006348591.1| - 8.6e-10 38.5 7.2 8.6e-10 38.5 5.0 4.0 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF3169 PF11368.3 gi|389846352|ref|YP_006348591.1| - 0.0069 15.6 0.7 1.5 7.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3169) Glyoxalase_2 PF12681.2 gi|389846353|ref|YP_006348592.1| - 2.1e-23 83.0 6.7 2.5e-13 50.5 0.3 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389846353|ref|YP_006348592.1| - 2.3e-19 69.6 5.9 8.4e-13 48.4 0.3 2.5 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389846353|ref|YP_006348592.1| - 1.3e-09 38.0 5.1 0.00022 21.1 0.3 2.9 2 2 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|389846353|ref|YP_006348592.1| - 0.00014 21.8 4.2 0.11 12.3 0.1 3.9 2 2 0 2 2 2 2 Glyoxalase-like domain YecM PF06185.7 gi|389846353|ref|YP_006348592.1| - 0.13 11.4 0.1 16 4.6 0.0 2.8 3 0 0 3 3 3 0 YecM protein Phage_30_8 PF06019.6 gi|389846354|ref|YP_006348593.1| - 0.076 12.7 4.8 0.033 13.8 1.0 2.1 2 0 0 2 2 2 0 Phage GP30.8 protein NAGLU_N PF12971.2 gi|389846354|ref|YP_006348593.1| - 0.085 12.5 0.0 0.55 9.9 0.0 2.4 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain DUF3244 PF11589.3 gi|389846354|ref|YP_006348593.1| - 3.1 7.5 10.9 1 9.0 0.0 4.5 3 2 4 7 7 7 0 Domain of unknown function (DUF3244) Exosortase_EpsH PF09721.5 gi|389846355|ref|YP_006348594.1| - 4.4e-48 163.7 23.6 5.6e-48 163.4 16.3 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TP_methylase PF00590.15 gi|389846356|ref|YP_006348595.1| - 5e-18 65.5 0.3 6.1e-18 65.2 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Sulfatase PF00884.18 gi|389846356|ref|YP_006348595.1| - 0.071 12.2 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 Sulfatase DUF2752 PF10825.3 gi|389846357|ref|YP_006348596.1| - 0.071 13.1 0.1 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) DUF1178 PF06676.6 gi|389846357|ref|YP_006348596.1| - 0.077 13.1 0.0 0.082 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) CMD PF02627.15 gi|389846359|ref|YP_006348598.1| - 5.2e-12 45.4 0.0 7.6e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.1 gi|389846359|ref|YP_006348598.1| - 0.024 14.8 0.3 0.035 14.3 0.2 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain TMEM192 PF14802.1 gi|389846359|ref|YP_006348598.1| - 0.11 11.3 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 TMEM192 family CARDB PF07705.6 gi|389846360|ref|YP_006348599.1| - 1.3e-08 34.7 16.0 0.069 13.2 0.1 4.7 5 0 0 5 5 5 4 CARDB DUF4352 PF11611.3 gi|389846360|ref|YP_006348599.1| - 2.7e-05 24.3 9.7 0.12 12.4 0.0 4.3 3 2 2 5 5 5 3 Domain of unknown function (DUF4352) PapD_C PF02753.12 gi|389846360|ref|YP_006348599.1| - 0.025 14.4 1.6 0.62 9.9 0.2 3.5 3 1 1 4 4 4 0 Pili assembly chaperone PapD, C-terminal domain NOB1_Zn_bind PF08772.6 gi|389846360|ref|YP_006348599.1| - 0.082 12.7 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TAT_signal PF10518.4 gi|389846361|ref|YP_006348600.1| - 0.096 12.7 1.0 0.22 11.6 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AP_endonuc_2 PF01261.19 gi|389846364|ref|YP_006348603.1| - 0.0073 15.6 0.0 0.0079 15.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF2381 PF09544.5 gi|389846365|ref|YP_006348604.1| - 0.079 12.0 0.2 0.16 11.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) DUF4268 PF14088.1 gi|389846366|ref|YP_006348605.1| - 3.1e-24 85.2 5.2 5.2e-24 84.5 3.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) Phosphoprotein PF00922.12 gi|389846366|ref|YP_006348605.1| - 0.0015 17.8 0.4 0.0027 16.9 0.3 1.4 1 0 0 1 1 1 1 Vesiculovirus phosphoprotein Mit_KHE1 PF10173.4 gi|389846366|ref|YP_006348605.1| - 4.6 7.0 6.1 13 5.6 4.2 1.6 1 1 0 1 1 1 0 Mitochondrial K+-H+ exchange-related Amastin PF07344.6 gi|389846367|ref|YP_006348606.1| - 0.02 14.5 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Amastin surface glycoprotein Phage_integrase PF00589.17 gi|389846368|ref|YP_006348607.1| - 1.9e-14 53.7 0.0 4.7e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|389846368|ref|YP_006348607.1| - 0.00064 19.4 0.3 0.0013 18.4 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon Tenui_NCP PF04876.7 gi|389846368|ref|YP_006348607.1| - 0.017 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 Tenuivirus major non-capsid protein DUF2614 PF11023.3 gi|389846368|ref|YP_006348607.1| - 0.022 14.5 0.1 0.039 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) zf-ribbon_3 PF13248.1 gi|389846368|ref|YP_006348607.1| - 0.033 13.3 1.8 0.056 12.6 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain NTS PF15447.1 gi|389846368|ref|YP_006348607.1| - 0.11 12.9 0.1 0.21 11.9 0.1 1.5 1 0 0 1 1 1 0 N-terminal segments of PfEMP1 DUF615 PF04751.9 gi|389846369|ref|YP_006348608.1| - 0.009 15.6 0.1 0.0092 15.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF615) DUF287 PF03384.9 gi|389846369|ref|YP_006348608.1| - 0.039 14.1 0.1 0.054 13.6 0.1 1.2 1 0 0 1 1 1 0 Drosophila protein of unknown function, DUF287 Totivirus_coat PF05518.6 gi|389846371|ref|YP_006348610.1| - 0.044 11.6 0.0 0.047 11.5 0.0 1.1 1 0 0 1 1 1 0 Totivirus coat protein zf-C3HC4_3 PF13920.1 gi|389846373|ref|YP_006348612.1| - 0.11 12.1 1.4 0.37 10.4 0.1 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_4 PF14447.1 gi|389846373|ref|YP_006348612.1| - 0.71 9.4 3.7 0.58 9.7 0.6 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 HTH_45 PF14947.1 gi|389846374|ref|YP_006348613.1| - 0.00063 19.5 0.0 0.00066 19.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|389846374|ref|YP_006348613.1| - 0.081 13.0 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.1 gi|389846375|ref|YP_006348614.1| - 0.029 14.1 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|389846375|ref|YP_006348614.1| - 0.036 13.9 0.1 0.044 13.6 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1707 PF08044.6 gi|389846375|ref|YP_006348614.1| - 0.06 13.1 0.3 0.089 12.5 0.1 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1707) DUF1441 PF07278.6 gi|389846375|ref|YP_006348614.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) HTH_Crp_2 PF13545.1 gi|389846375|ref|YP_006348614.1| - 0.11 12.3 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|389846375|ref|YP_006348614.1| - 0.15 12.2 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator AAA_16 PF13191.1 gi|389846376|ref|YP_006348615.1| - 4e-12 46.5 0.5 3.5e-11 43.4 0.3 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389846376|ref|YP_006348615.1| - 4.9e-11 42.9 0.1 1.2e-09 38.4 0.0 2.7 2 1 1 3 3 3 1 AAA domain Bac_DnaA PF00308.13 gi|389846376|ref|YP_006348615.1| - 2.4e-06 27.3 0.1 6.7e-06 25.9 0.1 1.9 1 1 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.24 gi|389846376|ref|YP_006348615.1| - 2.5e-06 27.7 0.0 2.3e-05 24.5 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|389846376|ref|YP_006348615.1| - 5.2e-05 23.1 0.0 9.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|389846376|ref|YP_006348615.1| - 0.00024 20.8 0.0 0.00081 19.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|389846376|ref|YP_006348615.1| - 0.00024 20.2 0.3 0.041 12.9 0.1 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|389846376|ref|YP_006348615.1| - 0.0012 17.8 0.0 0.0018 17.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_10 PF12846.2 gi|389846376|ref|YP_006348615.1| - 0.0013 18.2 0.0 0.007 15.8 0.0 2.1 2 1 1 3 3 3 1 AAA-like domain Arch_ATPase PF01637.13 gi|389846376|ref|YP_006348615.1| - 0.0015 18.2 0.1 0.1 12.2 0.0 2.6 2 1 1 3 3 3 1 Archaeal ATPase AAA_18 PF13238.1 gi|389846376|ref|YP_006348615.1| - 0.0026 18.0 1.3 0.011 16.0 0.2 2.4 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|389846376|ref|YP_006348615.1| - 0.0055 16.1 0.4 0.036 13.5 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|389846376|ref|YP_006348615.1| - 0.0071 16.0 0.8 0.25 11.0 0.1 2.5 2 0 0 2 2 2 1 NTPase DEAD PF00270.24 gi|389846376|ref|YP_006348615.1| - 0.0078 15.7 1.5 3 7.3 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|389846376|ref|YP_006348615.1| - 0.017 14.8 1.0 0.044 13.5 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|389846376|ref|YP_006348615.1| - 0.03 15.1 4.6 0.11 13.3 3.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389846376|ref|YP_006348615.1| - 0.031 13.8 1.3 0.064 12.8 0.9 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|389846376|ref|YP_006348615.1| - 0.034 13.5 2.1 0.43 9.9 0.0 2.6 3 0 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|389846376|ref|YP_006348615.1| - 0.04 12.8 0.1 0.082 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RP-C PF03428.8 gi|389846376|ref|YP_006348615.1| - 0.048 13.1 0.3 0.096 12.1 0.2 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2075 PF09848.4 gi|389846376|ref|YP_006348615.1| - 0.077 11.9 0.0 0.31 9.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|389846376|ref|YP_006348615.1| - 0.093 12.6 0.0 0.23 11.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain Herpeto_peptide PF14409.1 gi|389846376|ref|YP_006348615.1| - 0.095 12.4 0.0 0.48 10.2 0.0 2.0 2 0 0 2 2 2 0 Ribosomally synthesized peptide in Herpetosiphon Sigma54_activat PF00158.21 gi|389846376|ref|YP_006348615.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|389846376|ref|YP_006348615.1| - 0.13 10.9 0.1 7.6 5.0 0.0 2.3 3 0 0 3 3 3 0 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|389846376|ref|YP_006348615.1| - 0.17 11.4 1.1 0.26 10.8 0.5 1.4 1 1 0 1 1 1 0 AAA domain DUF1109 PF06532.6 gi|389846378|ref|YP_006348617.1| - 0.082 12.3 3.5 0.097 12.0 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) DUF3948 PF13134.1 gi|389846378|ref|YP_006348617.1| - 0.21 11.1 1.1 0.7 9.4 0.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3948) HAMP PF00672.20 gi|389846378|ref|YP_006348617.1| - 1.8 8.7 4.6 4 7.6 0.1 2.4 2 0 0 2 2 2 0 HAMP domain TrbC PF04956.8 gi|389846379|ref|YP_006348618.1| - 3.3 7.7 8.9 0.51 10.3 1.3 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family TM_helix PF05552.7 gi|389846382|ref|YP_006348621.1| - 0.099 12.3 3.9 2.2 8.0 2.0 2.3 2 0 0 2 2 2 0 Conserved TM helix Caps_synth_CapC PF14102.1 gi|389846382|ref|YP_006348621.1| - 2.1 8.4 9.0 5 7.2 1.5 2.1 1 1 1 2 2 2 0 Capsule biosynthesis CapC FtsX PF02687.16 gi|389846383|ref|YP_006348622.1| - 0.38 10.5 3.4 0.6 9.8 2.4 1.3 1 1 0 1 1 1 0 FtsX-like permease family DUF1034 PF06280.7 gi|389846385|ref|YP_006348624.1| - 0.092 13.1 0.3 0.21 11.9 0.2 1.5 1 0 0 1 1 1 0 Fn3-like domain (DUF1034) AAA_25 PF13481.1 gi|389846387|ref|YP_006348626.1| - 0.00023 20.6 0.0 0.0021 17.5 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|389846387|ref|YP_006348626.1| - 0.033 13.7 0.1 0.09 12.3 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|389846387|ref|YP_006348626.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF1129 PF06570.6 gi|389846388|ref|YP_006348627.1| - 0.0083 15.4 0.5 0.014 14.7 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) DUF4131 PF13567.1 gi|389846388|ref|YP_006348627.1| - 0.21 10.9 0.8 5.1 6.4 1.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MCM PF00493.18 gi|389846389|ref|YP_006348628.1| - 7.4e-91 304.3 0.0 9.5e-91 304.0 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|389846389|ref|YP_006348628.1| - 6.7e-14 51.5 0.1 1.5e-09 37.3 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|389846389|ref|YP_006348628.1| - 4.9e-09 36.0 0.0 1.9e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|389846389|ref|YP_006348628.1| - 0.00034 20.6 0.9 0.021 14.8 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain MCM_N PF14551.1 gi|389846389|ref|YP_006348628.1| - 0.0052 17.2 0.1 0.33 11.4 0.0 2.4 2 1 0 2 2 2 1 MCM N-terminal domain Sigma54_activat PF00158.21 gi|389846389|ref|YP_006348628.1| - 0.0078 15.7 0.1 0.032 13.6 0.1 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.1 gi|389846389|ref|YP_006348628.1| - 0.018 14.6 0.6 0.11 12.1 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|389846389|ref|YP_006348628.1| - 0.019 14.7 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|389846389|ref|YP_006348628.1| - 0.028 14.5 0.1 0.19 11.8 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|389846389|ref|YP_006348628.1| - 0.091 12.9 0.1 0.22 11.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Resolvase PF00239.16 gi|389846391|ref|YP_006348630.1| - 1.2e-33 115.9 2.2 1.9e-33 115.3 1.5 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|389846391|ref|YP_006348630.1| - 0.00036 20.1 0.1 0.0019 17.8 0.1 2.2 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|389846391|ref|YP_006348630.1| - 0.0065 16.4 0.1 0.04 13.9 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|389846391|ref|YP_006348630.1| - 0.014 15.2 0.0 0.039 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|389846391|ref|YP_006348630.1| - 0.089 12.9 0.1 0.41 10.8 0.1 2.1 1 1 1 2 2 2 0 Winged helix-turn helix HTH_30 PF13556.1 gi|389846391|ref|YP_006348630.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Fic PF02661.13 gi|389846392|ref|YP_006348631.1| - 6.1e-05 23.6 0.1 9.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family HTH_AsnC-type PF13404.1 gi|389846393|ref|YP_006348632.1| - 0.067 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Dam PF05869.6 gi|389846394|ref|YP_006348633.1| - 1.2e-11 44.3 0.0 1.4e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) Met_10 PF02475.11 gi|389846397|ref|YP_006348636.1| - 2.4e-58 197.0 0.0 3.1e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|389846397|ref|YP_006348636.1| - 3.7e-09 36.6 0.6 1.2e-08 35.0 0.2 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846397|ref|YP_006348636.1| - 8.7e-09 35.9 0.5 2.2e-08 34.6 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|389846397|ref|YP_006348636.1| - 1.1e-07 31.4 0.0 2.3e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|389846397|ref|YP_006348636.1| - 2.5e-07 30.3 0.0 3.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|389846397|ref|YP_006348636.1| - 1.3e-05 24.8 0.0 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|389846397|ref|YP_006348636.1| - 1.5e-05 24.3 0.0 2.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|389846397|ref|YP_006348636.1| - 2.4e-05 23.9 0.0 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|389846397|ref|YP_006348636.1| - 0.00034 20.0 0.0 0.0011 18.4 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical protein 95 TRM PF02005.11 gi|389846397|ref|YP_006348636.1| - 0.00065 18.7 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.10 gi|389846397|ref|YP_006348636.1| - 0.0029 17.1 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase FmrO PF07091.6 gi|389846397|ref|YP_006348636.1| - 0.0086 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltrans_SAM PF10672.4 gi|389846397|ref|YP_006348636.1| - 0.018 13.9 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_25 PF13649.1 gi|389846397|ref|YP_006348636.1| - 0.029 14.7 0.0 0.076 13.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.12 gi|389846397|ref|YP_006348636.1| - 0.032 13.3 0.0 0.048 12.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase RrnaAD PF00398.15 gi|389846397|ref|YP_006348636.1| - 0.075 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|389846397|ref|YP_006348636.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|389846397|ref|YP_006348636.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase HTH_10 PF04967.7 gi|389846398|ref|YP_006348637.1| - 6.8e-18 63.9 0.0 1.5e-17 62.9 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.2 gi|389846398|ref|YP_006348637.1| - 7.5e-06 25.5 0.1 5.3e-05 22.8 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|389846398|ref|YP_006348637.1| - 0.0012 18.1 0.0 0.011 15.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389846398|ref|YP_006348637.1| - 0.0028 17.1 0.1 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|389846398|ref|YP_006348637.1| - 0.0043 16.3 0.0 0.016 14.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|389846398|ref|YP_006348637.1| - 0.024 14.0 0.0 5.2 6.6 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Usp PF00582.21 gi|389846400|ref|YP_006348639.1| - 1.2e-31 109.8 0.2 1.3e-31 109.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family SNARE_assoc PF09335.6 gi|389846401|ref|YP_006348640.1| - 1.7e-20 73.4 6.5 1.7e-20 73.4 4.5 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein AzlD PF05437.7 gi|389846401|ref|YP_006348640.1| - 2.2 8.2 16.2 1.2 9.1 5.3 3.2 2 1 1 3 3 3 0 Branched-chain amino acid transport protein (AzlD) E1-E2_ATPase PF00122.15 gi|389846402|ref|YP_006348641.1| - 1.2e-67 227.3 2.6 2.8e-67 226.1 1.8 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|389846402|ref|YP_006348641.1| - 9.3e-39 132.8 2.3 9.3e-39 132.8 1.6 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|389846402|ref|YP_006348641.1| - 8.9e-36 124.3 0.0 3.3e-35 122.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|389846402|ref|YP_006348641.1| - 5.1e-19 67.5 0.0 1.4e-18 66.0 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|389846402|ref|YP_006348641.1| - 3e-17 62.3 0.0 6.1e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|389846402|ref|YP_006348641.1| - 3.3e-14 53.4 1.5 6.6e-14 52.5 1.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|389846402|ref|YP_006348641.1| - 0.00056 19.5 0.4 0.12 11.9 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Pyridox_ox_2 PF12900.2 gi|389846403|ref|YP_006348642.1| - 2.4e-11 43.6 0.0 2.7e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|389846403|ref|YP_006348642.1| - 0.032 14.2 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|389846404|ref|YP_006348643.1| - 2e-06 28.0 3.2 8e-06 26.0 2.2 1.8 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|389846404|ref|YP_006348643.1| - 0.064 12.9 0.9 0.66 9.6 0.0 2.1 1 1 0 2 2 2 0 Electron transfer flavoprotein domain NPCBM_assoc PF10633.4 gi|389846405|ref|YP_006348644.1| - 0.028 14.4 0.2 0.053 13.5 0.1 1.6 1 1 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase E1-E2_ATPase PF00122.15 gi|662859395|ref|YP_006348645.2| - 2.2e-43 147.9 0.6 2.2e-43 147.9 0.4 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|662859395|ref|YP_006348645.2| - 2.5e-33 116.3 9.0 2.5e-33 116.3 6.2 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|662859395|ref|YP_006348645.2| - 7.3e-12 45.8 0.1 1.5e-11 44.8 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|662859395|ref|YP_006348645.2| - 4.6e-11 42.7 0.0 1.6e-10 40.9 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|662859395|ref|YP_006348645.2| - 0.0003 20.4 0.3 0.00045 19.8 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|662859395|ref|YP_006348645.2| - 0.0028 18.1 0.7 0.01 16.3 0.7 1.8 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Peptidase_S24 PF00717.18 gi|662859395|ref|YP_006348645.2| - 0.065 12.8 0.9 0.8 9.3 0.0 2.8 3 0 0 3 3 3 0 Peptidase S24-like DsbD_2 PF13386.1 gi|389846407|ref|YP_006348646.1| - 2.3e-42 144.9 19.8 2.9e-42 144.6 13.7 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2306 PF10067.4 gi|389846407|ref|YP_006348646.1| - 4.2 7.5 8.3 0.43 10.7 0.5 3.0 2 2 1 3 3 3 0 Predicted membrane protein (DUF2306) DUF2182 PF09948.4 gi|389846407|ref|YP_006348646.1| - 8.6 6.2 9.6 0.55 10.1 0.4 2.7 2 1 1 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) Tmemb_40 PF10160.4 gi|389846408|ref|YP_006348647.1| - 0.032 13.4 0.0 0.032 13.4 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein COX2 PF00116.15 gi|389846410|ref|YP_006348649.1| - 3.1e-23 81.8 0.2 6e-23 80.9 0.1 1.5 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|389846410|ref|YP_006348649.1| - 0.00011 22.0 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|389846410|ref|YP_006348649.1| - 0.00067 19.1 1.3 0.0013 18.2 0.9 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|389846411|ref|YP_006348650.1| - 4.3e-69 233.2 54.7 4.3e-69 233.2 37.9 1.9 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF443 PF04276.7 gi|389846412|ref|YP_006348651.1| - 0.041 13.3 0.8 0.046 13.1 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF443) Usp PF00582.21 gi|389846413|ref|YP_006348652.1| - 1.1e-34 119.5 2.7 1.3e-34 119.4 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|389846413|ref|YP_006348652.1| - 0.029 13.6 0.1 2.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FMN_red PF03358.10 gi|389846413|ref|YP_006348652.1| - 0.078 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Aldolase PF01081.14 gi|389846414|ref|YP_006348653.1| - 7.7e-44 149.2 1.6 9.5e-44 148.9 1.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|389846414|ref|YP_006348653.1| - 0.00093 18.2 7.3 0.54 9.1 0.4 3.0 2 1 1 3 3 3 2 Dihydroorotate dehydrogenase DeoC PF01791.4 gi|389846414|ref|YP_006348653.1| - 0.028 13.6 2.9 0.052 12.8 0.2 2.2 2 1 0 2 2 2 0 DeoC/LacD family aldolase TMP-TENI PF02581.12 gi|389846414|ref|YP_006348653.1| - 0.043 12.9 0.9 0.89 8.6 0.6 2.9 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|389846414|ref|YP_006348653.1| - 0.32 10.1 4.9 0.6 9.1 0.0 2.3 1 1 1 2 2 2 0 Nitronate monooxygenase Pro_CA PF00484.14 gi|389846415|ref|YP_006348654.1| - 4.1e-26 91.8 0.1 5.4e-26 91.4 0.1 1.1 1 0 0 1 1 1 1 Carbonic anhydrase bPH_2 PF03703.9 gi|389846416|ref|YP_006348655.1| - 3.3e-43 145.5 3.5 1.2e-19 70.0 0.2 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|389846416|ref|YP_006348655.1| - 0.0001 22.0 0.0 0.16 11.8 0.0 2.7 3 0 0 3 3 3 2 Bacterial PH domain YwiC PF14256.1 gi|389846416|ref|YP_006348655.1| - 0.0097 15.9 0.4 0.0097 15.9 0.3 2.7 3 0 0 3 3 3 1 YwiC-like protein DUF2244 PF10003.4 gi|389846416|ref|YP_006348655.1| - 0.028 13.8 2.6 2.4 7.5 0.1 3.2 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) bPH_5 PF10882.3 gi|389846416|ref|YP_006348655.1| - 0.077 12.7 0.0 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial PH domain FA_desaturase PF00487.19 gi|389846416|ref|YP_006348655.1| - 7.3 5.9 11.2 6 6.2 0.1 3.0 3 0 0 3 3 3 0 Fatty acid desaturase bPH_2 PF03703.9 gi|389846417|ref|YP_006348656.1| - 2.8e-16 59.2 0.0 4.1e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain IncA PF04156.9 gi|389846417|ref|YP_006348656.1| - 0.018 14.6 2.7 0.027 14.0 1.8 1.3 1 0 0 1 1 1 0 IncA protein Mito_morph_reg PF14972.1 gi|389846417|ref|YP_006348656.1| - 0.085 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial morphogenesis regulator DUF1469 PF07332.6 gi|389846417|ref|YP_006348656.1| - 5.7 6.7 9.6 9.8 5.9 6.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Protoglobin PF11563.3 gi|662859397|ref|YP_006348657.2| - 0.016 14.8 0.1 2 8.0 0.0 2.2 1 1 1 2 2 2 0 Protoglobin TMF_TATA_bd PF12325.3 gi|662859397|ref|YP_006348657.2| - 0.2 11.3 1.1 23 4.7 0.0 2.8 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Metallophos PF00149.23 gi|389846419|ref|YP_006348658.1| - 9.2e-10 38.2 5.5 2.7e-09 36.7 3.8 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|389846419|ref|YP_006348658.1| - 1.9e-08 34.2 0.1 3.1e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CopD PF05425.8 gi|662859398|ref|YP_006348659.2| - 0.0018 18.4 6.9 0.0018 18.4 4.8 1.8 1 1 1 2 2 2 1 Copper resistance protein D Peptidase_S9 PF00326.16 gi|389846421|ref|YP_006348660.1| - 4e-49 166.7 0.1 5.9e-49 166.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|389846421|ref|YP_006348660.1| - 3.9e-15 55.1 9.4 0.00024 20.6 0.0 5.7 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|389846421|ref|YP_006348660.1| - 1.1e-08 34.0 0.1 0.0098 14.5 0.0 4.3 2 2 2 5 5 5 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_5 PF12695.2 gi|389846421|ref|YP_006348660.1| - 1.2e-08 34.8 0.1 2.4e-08 33.8 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|389846421|ref|YP_006348660.1| - 1.3e-08 34.6 0.2 0.0012 18.3 0.1 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|389846421|ref|YP_006348660.1| - 1.5e-07 30.9 0.0 3.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|389846421|ref|YP_006348660.1| - 3.8e-06 26.9 8.1 1.7e-05 24.7 4.0 2.7 2 1 0 2 2 2 1 Alpha/beta hydrolase family Gmad1 PF10647.4 gi|389846421|ref|YP_006348660.1| - 0.00011 21.6 10.3 0.0055 16.1 1.9 3.6 2 2 1 3 3 3 3 Lipoprotein LpqB beta-propeller domain FSH1 PF03959.8 gi|389846421|ref|YP_006348660.1| - 0.013 14.9 0.0 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|389846421|ref|YP_006348660.1| - 0.024 14.2 0.9 0.31 10.5 0.6 2.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|389846421|ref|YP_006348660.1| - 0.085 12.0 0.0 0.18 11.0 0.0 1.5 1 1 0 1 1 1 0 Esterase PHB depolymerase WD40 PF00400.27 gi|389846421|ref|YP_006348660.1| - 0.24 11.3 4.1 7.5 6.6 0.0 4.3 5 0 0 5 5 5 0 WD domain, G-beta repeat DUF2071 PF09844.4 gi|389846422|ref|YP_006348661.1| - 2.5e-64 216.6 0.0 2.8e-64 216.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|389846422|ref|YP_006348661.1| - 0.00025 20.4 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Aldo_ket_red PF00248.16 gi|389846423|ref|YP_006348662.1| - 3.4e-66 222.9 0.0 3.8e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Macro PF01661.16 gi|389846424|ref|YP_006348663.1| - 1.6e-26 92.5 0.0 2e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 Macro domain Oxidored_FMN PF00724.15 gi|389846425|ref|YP_006348664.1| - 1.4e-33 116.3 0.0 5.3e-30 104.5 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|389846425|ref|YP_006348664.1| - 0.036 12.8 0.0 0.16 10.7 0.0 2.0 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|389846425|ref|YP_006348664.1| - 0.1 11.8 0.0 0.25 10.5 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein HTH_20 PF12840.2 gi|389846426|ref|YP_006348665.1| - 1.2e-09 37.8 0.2 1.6e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389846426|ref|YP_006348665.1| - 1.3e-05 24.7 0.2 2.4e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389846426|ref|YP_006348665.1| - 0.0045 16.6 0.0 0.008 15.8 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389846426|ref|YP_006348665.1| - 0.0062 16.1 0.1 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|389846426|ref|YP_006348665.1| - 0.032 13.5 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|389846426|ref|YP_006348665.1| - 0.039 13.8 0.0 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase FUR PF01475.14 gi|389846426|ref|YP_006348665.1| - 0.096 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF1522 PF07482.6 gi|389846427|ref|YP_006348666.1| - 0.13 12.3 0.6 0.25 11.5 0.4 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1522) DUF3353 PF11833.3 gi|389846427|ref|YP_006348666.1| - 0.86 9.0 2.8 0.96 8.8 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF4199 PF13858.1 gi|389846427|ref|YP_006348666.1| - 1.3 8.8 6.1 0.33 10.8 1.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) Thioredoxin PF00085.15 gi|389846428|ref|YP_006348667.1| - 1.2e-27 95.5 0.0 1.6e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389846428|ref|YP_006348667.1| - 5.3e-10 39.4 0.1 5.2e-09 36.2 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|389846428|ref|YP_006348667.1| - 8e-08 32.2 0.0 7.8e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|389846428|ref|YP_006348667.1| - 1.4e-06 28.2 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like DSBA PF01323.15 gi|389846428|ref|YP_006348667.1| - 2.6e-06 27.1 0.5 5e-06 26.2 0.1 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_9 PF14595.1 gi|389846428|ref|YP_006348667.1| - 2.9e-05 23.6 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|389846428|ref|YP_006348667.1| - 0.00013 22.1 0.0 0.00022 21.3 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|389846428|ref|YP_006348667.1| - 0.00036 20.2 0.0 0.00067 19.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|389846428|ref|YP_006348667.1| - 0.00063 19.6 0.0 0.00096 19.0 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE TraF PF13728.1 gi|389846428|ref|YP_006348667.1| - 0.00086 18.8 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.16 gi|389846428|ref|YP_006348667.1| - 0.011 15.4 0.1 0.12 12.0 0.0 1.9 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_5 PF13743.1 gi|389846428|ref|YP_006348667.1| - 0.016 14.7 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.1 gi|389846428|ref|YP_006348667.1| - 0.02 14.8 0.1 0.27 11.2 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Glutaredoxin PF00462.19 gi|389846428|ref|YP_006348667.1| - 0.038 13.9 0.1 0.086 12.8 0.1 1.7 1 1 0 1 1 1 0 Glutaredoxin TrbC_Ftype PF09673.5 gi|389846428|ref|YP_006348667.1| - 0.039 13.5 0.0 0.058 13.0 0.0 1.4 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Redoxin PF08534.5 gi|389846428|ref|YP_006348667.1| - 0.057 12.9 0.1 0.16 11.5 0.1 1.7 1 1 0 1 1 1 0 Redoxin SSURE PF11966.3 gi|389846428|ref|YP_006348667.1| - 0.079 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Fibronectin-binding repeat Glycos_transf_3 PF00591.16 gi|389846429|ref|YP_006348668.1| - 6.8e-12 45.3 1.1 1.7e-11 44.0 0.8 1.8 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.8 gi|389846429|ref|YP_006348668.1| - 2.5e-11 42.8 0.0 6.4e-11 41.5 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|389846429|ref|YP_006348668.1| - 9.4e-08 31.5 0.0 2.4e-07 30.2 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Molydop_binding PF01568.16 gi|389846429|ref|YP_006348668.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain IF-2B PF01008.12 gi|389846430|ref|YP_006348669.1| - 1.9e-76 256.7 0.2 2.2e-76 256.5 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF162 PF02589.10 gi|389846430|ref|YP_006348669.1| - 0.0064 16.0 2.4 0.02 14.3 1.7 1.9 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 6PGD PF00393.14 gi|389846430|ref|YP_006348669.1| - 0.15 11.2 0.0 0.39 9.8 0.0 1.6 2 0 0 2 2 2 0 6-phosphogluconate dehydrogenase, C-terminal domain HTH_10 PF04967.7 gi|389846431|ref|YP_006348670.1| - 4.5e-14 51.7 0.0 7.4e-14 51.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389846431|ref|YP_006348670.1| - 6.5e-05 22.3 0.2 0.00089 18.6 0.1 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389846431|ref|YP_006348670.1| - 0.0032 16.7 0.0 0.0064 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|389846431|ref|YP_006348670.1| - 0.0044 16.1 0.0 0.0085 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.1 gi|389846431|ref|YP_006348670.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|389846431|ref|YP_006348670.1| - 0.15 11.4 0.1 1.1 8.6 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Complex1_49kDa PF00346.14 gi|389846432|ref|YP_006348671.1| - 1.6e-64 217.5 0.1 6.9e-41 140.0 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|389846432|ref|YP_006348671.1| - 4.4e-30 103.9 0.1 8.1e-30 103.1 0.1 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RuBisCO_large PF00016.15 gi|389846433|ref|YP_006348672.1| - 5.6e-64 215.9 0.2 5.4e-62 209.4 0.1 2.2 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|389846433|ref|YP_006348672.1| - 3.7e-19 68.6 0.1 1.4e-18 66.8 0.0 2.0 2 1 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Na_Ca_ex PF01699.19 gi|389846434|ref|YP_006348673.1| - 1.5e-33 115.3 26.2 4.4e-23 81.4 7.5 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DEAD PF00270.24 gi|389846435|ref|YP_006348674.1| - 3.2e-23 82.0 0.0 1.1e-22 80.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|389846435|ref|YP_006348674.1| - 9e-08 31.8 0.1 1.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|389846435|ref|YP_006348674.1| - 0.00016 21.5 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TAT_signal PF10518.4 gi|389846436|ref|YP_006348675.1| - 5 7.3 6.9 0.4 10.8 1.1 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_1_2 PF00155.16 gi|389846437|ref|YP_006348676.1| - 1.3e-65 221.7 0.0 1.5e-65 221.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|389846437|ref|YP_006348676.1| - 8.5e-08 31.6 0.0 2.9e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|389846437|ref|YP_006348676.1| - 3.7e-06 25.4 0.0 5.9e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|389846437|ref|YP_006348676.1| - 0.00036 19.6 0.4 0.0017 17.4 0.1 2.0 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|389846437|ref|YP_006348676.1| - 0.0034 16.1 0.0 0.0056 15.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DMRL_synthase PF00885.14 gi|389846438|ref|YP_006348677.1| - 4.4e-35 120.4 2.0 4.8e-35 120.3 1.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.1 gi|389846439|ref|YP_006348678.1| - 1.4e-13 51.0 5.5 1.4e-13 51.0 3.8 2.9 4 1 0 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF668 PF05003.7 gi|389846439|ref|YP_006348678.1| - 0.17 12.1 0.0 0.4 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF668) ATP-grasp PF02222.17 gi|662859399|ref|YP_006348679.2| - 1.2e-51 174.4 0.0 1.6e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|662859399|ref|YP_006348679.2| - 8.1e-18 64.7 0.1 1.3e-17 64.1 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|662859399|ref|YP_006348679.2| - 3e-06 26.2 0.0 2.8e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|662859399|ref|YP_006348679.2| - 7.6e-05 21.9 0.0 0.00015 20.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.8 gi|662859399|ref|YP_006348679.2| - 0.0047 16.3 0.0 0.0087 15.4 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus NAD_binding_10 PF13460.1 gi|662859399|ref|YP_006348679.2| - 0.0049 16.8 0.2 0.009 16.0 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|662859399|ref|YP_006348679.2| - 0.013 15.8 0.1 0.064 13.5 0.0 2.0 1 1 1 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|662859399|ref|YP_006348679.2| - 0.099 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|662859399|ref|YP_006348679.2| - 0.14 12.1 0.1 0.7 9.9 0.0 2.2 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|662859399|ref|YP_006348679.2| - 0.14 11.9 0.0 0.37 10.6 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AIRC PF00731.15 gi|389846441|ref|YP_006348680.1| - 8e-51 171.2 0.1 9.7e-51 170.9 0.1 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|389846442|ref|YP_006348681.1| - 1.6e-28 98.5 0.3 1.9e-28 98.2 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DctQ PF04290.7 gi|389846442|ref|YP_006348681.1| - 0.49 10.1 6.4 0.48 10.1 1.1 2.1 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Oxidored_q6 PF01058.17 gi|389846443|ref|YP_006348682.1| - 9.1e-22 77.0 0.2 1.3e-21 76.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|389846444|ref|YP_006348683.1| - 4e-64 216.2 0.0 1.3e-41 142.3 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|389846444|ref|YP_006348683.1| - 2.3e-29 101.6 0.1 4.7e-29 100.6 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|389846445|ref|YP_006348684.1| - 3.9e-80 269.2 12.7 4.7e-80 268.9 8.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|389846446|ref|YP_006348685.1| - 1.9e-12 46.1 9.6 1.2e-06 27.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|389846446|ref|YP_006348685.1| - 1.9e-11 44.1 10.4 3.1e-11 43.4 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|389846446|ref|YP_006348685.1| - 2.1e-10 40.2 8.9 2.9e-10 39.8 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389846446|ref|YP_006348685.1| - 2e-09 37.0 10.8 3.2e-09 36.4 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389846446|ref|YP_006348685.1| - 4.2e-09 37.0 5.2 2.5e-05 24.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|389846446|ref|YP_006348685.1| - 5.5e-09 36.1 11.5 1.2e-08 35.0 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|389846446|ref|YP_006348685.1| - 2.3e-08 33.9 9.3 4.1e-08 33.1 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389846446|ref|YP_006348685.1| - 5.5e-08 32.3 13.1 0.0004 20.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|389846446|ref|YP_006348685.1| - 1.2e-07 31.1 9.7 0.00025 20.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|389846446|ref|YP_006348685.1| - 5.6e-07 29.3 8.8 0.0021 18.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|389846446|ref|YP_006348685.1| - 1.4e-05 25.3 11.7 0.0091 16.3 8.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389846446|ref|YP_006348685.1| - 9.3e-05 22.7 12.2 0.022 15.2 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|389846446|ref|YP_006348685.1| - 0.00034 20.9 14.8 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|389846446|ref|YP_006348685.1| - 0.0015 19.0 8.4 0.11 13.0 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|389846446|ref|YP_006348685.1| - 0.045 14.1 12.1 0.38 11.1 0.8 2.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Oxidored_q3 PF00499.15 gi|389846447|ref|YP_006348686.1| - 2e-13 50.3 5.2 2.7e-13 49.8 3.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|389846447|ref|YP_006348686.1| - 0.0003 20.7 9.6 0.00042 20.2 6.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) YlaC PF10777.4 gi|389846447|ref|YP_006348686.1| - 0.11 12.0 2.6 0.15 11.6 1.8 1.2 1 0 0 1 1 1 0 Inner membrane protein YlaC YjgP_YjgQ PF03739.9 gi|389846447|ref|YP_006348686.1| - 2.4 6.8 9.6 2.8 6.6 6.7 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF1418 PF07214.7 gi|389846447|ref|YP_006348686.1| - 3 7.5 6.7 3.6 7.2 4.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) Oxidored_q2 PF00420.19 gi|389846449|ref|YP_006348688.1| - 1.4e-22 79.0 6.3 1.6e-22 78.9 4.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YiaAB PF05360.9 gi|389846449|ref|YP_006348688.1| - 0.73 9.4 8.3 0.36 10.3 0.8 2.4 2 0 0 2 2 2 0 yiaA/B two helix domain DoxX PF07681.7 gi|389846449|ref|YP_006348688.1| - 6.1 7.3 10.2 2.5 8.5 2.0 2.2 1 1 1 2 2 2 0 DoxX Oxidored_q1 PF00361.15 gi|389846450|ref|YP_006348689.1| - 8.2e-75 251.5 11.5 8.2e-75 251.5 8.0 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|389846450|ref|YP_006348689.1| - 2.5e-12 46.1 0.1 7.3e-12 44.6 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|389846451|ref|YP_006348690.1| - 1.6e-65 221.0 20.9 1.6e-65 221.0 14.5 2.6 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|389846451|ref|YP_006348690.1| - 0.0031 17.3 3.2 0.0031 17.3 2.2 3.8 3 1 0 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|389846452|ref|YP_006348691.1| - 9.8e-58 195.5 16.0 2e-57 194.4 11.1 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|389846452|ref|YP_006348691.1| - 0.021 14.4 1.5 0.083 12.4 1.0 2.1 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YqzM PF14141.1 gi|389846452|ref|YP_006348691.1| - 0.26 11.0 7.6 0.15 11.8 0.6 3.0 2 0 0 2 2 2 0 YqzM-like protein DUF624 PF04854.9 gi|389846452|ref|YP_006348691.1| - 1.5 8.7 10.1 0.12 12.2 0.4 3.8 3 0 0 3 3 3 0 Protein of unknown function, DUF624 PepSY_TM_1 PF13172.1 gi|389846452|ref|YP_006348691.1| - 6.6 6.6 19.0 3.4 7.5 0.4 4.6 3 0 0 3 3 3 0 PepSY-associated TM helix DHH PF01368.15 gi|389846454|ref|YP_006348693.1| - 2.4e-13 49.9 0.0 5.8e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|389846454|ref|YP_006348693.1| - 7.3e-13 48.0 0.6 2e-12 46.6 0.4 1.8 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|389846454|ref|YP_006348693.1| - 4.9e-09 36.2 0.1 2.3e-08 34.0 0.0 2.1 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|389846454|ref|YP_006348693.1| - 0.00036 20.0 0.0 0.00071 19.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|389846454|ref|YP_006348693.1| - 0.021 15.1 0.1 1.1 9.6 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|389846454|ref|YP_006348693.1| - 0.057 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding AARP2CN PF08142.7 gi|389846454|ref|YP_006348693.1| - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AARP2CN (NUC121) domain CBS PF00571.23 gi|389846455|ref|YP_006348694.1| - 1.1e-24 85.8 9.5 4.1e-12 45.6 0.0 3.0 4 0 0 4 4 4 2 CBS domain ParBc PF02195.13 gi|389846455|ref|YP_006348694.1| - 2.5e-10 40.3 0.3 1.2e-09 38.1 0.0 2.1 1 1 1 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|389846455|ref|YP_006348694.1| - 0.00047 20.0 0.1 0.005 16.6 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.6 gi|389846455|ref|YP_006348694.1| - 0.009 14.5 0.2 0.034 12.6 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1015) NHL PF01436.16 gi|389846455|ref|YP_006348694.1| - 0.34 10.9 1.3 1.5 8.9 0.1 2.6 3 0 0 3 3 3 0 NHL repeat MFS_1 PF07690.11 gi|662859400|ref|YP_006348697.2| - 1.8e-53 181.4 52.8 1.2e-48 165.6 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|662859400|ref|YP_006348697.2| - 2.5e-11 42.8 11.0 1.8e-10 39.9 7.6 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|662859400|ref|YP_006348697.2| - 6.3e-09 34.7 13.9 8.4e-05 21.1 5.5 2.1 1 1 0 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|662859400|ref|YP_006348697.2| - 0.00027 19.1 0.9 0.00027 19.1 0.6 2.5 3 0 0 3 3 3 2 Transmembrane secretion effector Folate_carrier PF01770.13 gi|662859400|ref|YP_006348697.2| - 0.044 12.2 0.0 0.098 11.1 0.0 1.5 1 0 0 1 1 1 0 Reduced folate carrier TRI12 PF06609.8 gi|662859400|ref|YP_006348697.2| - 0.077 11.1 5.0 0.13 10.4 1.3 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) OATP PF03137.15 gi|662859400|ref|YP_006348697.2| - 0.16 10.0 1.5 20 3.0 0.0 2.9 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family COX7C PF02935.11 gi|662859400|ref|YP_006348697.2| - 0.21 11.3 1.4 0.86 9.4 0.9 2.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc Peptidase_S8 PF00082.17 gi|389846460|ref|YP_006348699.1| - 1.5e-41 142.3 7.2 2e-41 142.0 5.0 1.1 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.4 gi|389846460|ref|YP_006348699.1| - 0.1 12.6 0.5 0.1 12.6 0.4 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF21 PF01595.15 gi|662859401|ref|YP_006348700.2| - 7.2e-28 97.1 0.3 9.7e-28 96.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|662859401|ref|YP_006348700.2| - 1.1e-10 41.1 1.2 1.3e-06 28.0 0.1 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M24 PF00557.19 gi|389846462|ref|YP_006348701.1| - 6.1e-60 202.3 0.6 7.4e-60 202.0 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|389846462|ref|YP_006348701.1| - 2.7e-28 99.0 0.1 6.1e-28 97.9 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CPSase_L_chain PF00289.17 gi|389846462|ref|YP_006348701.1| - 0.15 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AAA_26 PF13500.1 gi|389846463|ref|YP_006348702.1| - 2.7e-33 115.2 0.0 4.4e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.7 gi|389846463|ref|YP_006348702.1| - 4.2e-25 87.3 0.3 3.1e-24 84.5 0.0 2.4 3 0 0 3 3 3 1 DRTGG domain CbiA PF01656.18 gi|389846463|ref|YP_006348702.1| - 6.1e-09 35.5 0.2 1.2e-08 34.6 0.2 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.9 gi|389846463|ref|YP_006348702.1| - 0.043 12.7 0.3 1.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Peripla_BP_4 PF13407.1 gi|389846463|ref|YP_006348702.1| - 0.073 12.4 0.2 0.94 8.7 0.0 2.6 1 1 2 3 3 3 0 Periplasmic binding protein domain ATP-grasp_5 PF13549.1 gi|389846464|ref|YP_006348703.1| - 3.7e-73 245.4 0.7 6.1e-73 244.6 0.5 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|389846464|ref|YP_006348703.1| - 3e-51 172.6 2.6 1.1e-50 170.8 0.2 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|389846464|ref|YP_006348703.1| - 8.8e-25 87.1 0.6 1.9e-23 82.8 0.1 2.7 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|389846464|ref|YP_006348703.1| - 4e-12 46.4 0.9 1.6e-11 44.5 0.6 2.2 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|389846464|ref|YP_006348703.1| - 1.8e-05 24.2 0.1 3.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Zip PF02535.17 gi|389846465|ref|YP_006348704.1| - 6.6e-18 64.7 18.0 9.9e-18 64.1 2.6 2.6 1 1 1 2 2 2 2 ZIP Zinc transporter CDKN3 PF05706.7 gi|389846466|ref|YP_006348705.1| - 0.075 12.4 0.0 0.092 12.1 0.0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) ABC2_membrane PF01061.19 gi|389846467|ref|YP_006348706.1| - 1.2e-21 76.8 11.5 1.9e-21 76.2 8.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|389846467|ref|YP_006348706.1| - 6.9e-15 54.9 8.9 6.9e-15 54.9 6.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389846467|ref|YP_006348706.1| - 1e-07 31.3 12.6 1.3e-07 30.9 8.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389846467|ref|YP_006348706.1| - 9e-06 24.7 19.7 6e-05 22.0 13.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389846467|ref|YP_006348706.1| - 0.0032 16.8 4.8 0.0051 16.1 2.2 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein OppC_N PF12911.2 gi|389846467|ref|YP_006348706.1| - 0.11 11.8 0.2 0.11 11.8 0.2 2.7 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|389846468|ref|YP_006348707.1| - 1.5e-29 102.9 0.0 2.8e-29 102.1 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|389846468|ref|YP_006348707.1| - 6.7e-18 65.6 0.0 1.9e-11 44.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389846468|ref|YP_006348707.1| - 0.00073 18.8 0.0 0.39 9.9 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|389846468|ref|YP_006348707.1| - 0.00087 19.6 0.2 0.0012 19.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389846468|ref|YP_006348707.1| - 0.0012 18.2 0.3 0.0024 17.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|389846468|ref|YP_006348707.1| - 0.0046 16.4 0.1 1.1 8.5 0.1 2.4 2 1 0 2 2 2 1 IstB-like ATP binding protein UPF0079 PF02367.12 gi|389846468|ref|YP_006348707.1| - 0.0053 16.3 0.2 0.0093 15.5 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|389846468|ref|YP_006348707.1| - 0.0076 15.3 0.0 1.3 8.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|389846468|ref|YP_006348707.1| - 0.0083 16.1 0.2 0.015 15.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|389846468|ref|YP_006348707.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|389846468|ref|YP_006348707.1| - 0.014 15.6 0.4 0.065 13.4 0.1 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|389846468|ref|YP_006348707.1| - 0.019 14.5 1.1 0.16 11.5 0.3 2.5 1 1 2 3 3 3 0 AAA domain DUF258 PF03193.11 gi|389846468|ref|YP_006348707.1| - 0.025 13.7 0.1 0.049 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|389846468|ref|YP_006348707.1| - 0.038 14.8 0.2 0.069 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|389846468|ref|YP_006348707.1| - 0.049 13.4 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|389846468|ref|YP_006348707.1| - 0.053 13.4 0.1 0.088 12.7 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|389846468|ref|YP_006348707.1| - 0.055 12.8 0.1 0.23 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|389846468|ref|YP_006348707.1| - 0.062 13.2 1.0 0.16 11.9 0.7 1.7 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|389846468|ref|YP_006348707.1| - 0.087 11.5 0.6 0.15 10.8 0.4 1.3 1 0 0 1 1 1 0 ArgK protein Mg_chelatase PF01078.16 gi|389846468|ref|YP_006348707.1| - 0.1 11.7 0.0 0.21 10.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|389846468|ref|YP_006348707.1| - 0.12 12.9 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|389846468|ref|YP_006348707.1| - 0.13 11.7 0.1 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|389846468|ref|YP_006348707.1| - 0.15 12.2 0.1 0.29 11.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain GSDH PF07995.6 gi|389846469|ref|YP_006348708.1| - 5.9e-34 117.6 0.0 1.1e-33 116.7 0.0 1.3 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.6 gi|389846469|ref|YP_006348708.1| - 0.0018 18.0 0.0 7.7 6.9 0.0 4.0 3 0 0 3 3 3 1 Two component regulator propeller TAT_signal PF10518.4 gi|389846469|ref|YP_006348708.1| - 0.037 14.0 3.3 0.12 12.4 2.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.17 gi|389846470|ref|YP_006348709.1| - 9.5e-24 84.2 0.0 2.3e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|389846470|ref|YP_006348709.1| - 1.7e-09 37.4 0.1 3.7e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GreA_GreB_N PF03449.10 gi|389846470|ref|YP_006348709.1| - 0.094 12.7 0.1 0.98 9.5 0.0 2.2 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal SdpI PF13630.1 gi|389846471|ref|YP_006348710.1| - 4.7 6.9 5.5 5.9 6.6 3.8 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Aldo_ket_red PF00248.16 gi|389846472|ref|YP_006348711.1| - 4.5e-70 235.6 0.0 5.5e-70 235.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SIC PF03482.8 gi|389846472|ref|YP_006348711.1| - 0.00091 18.9 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 sic protein MF_alpha_N PF05436.6 gi|389846472|ref|YP_006348711.1| - 0.056 13.1 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus DUF457 PF04307.9 gi|389846473|ref|YP_006348712.1| - 5.2e-06 25.8 7.2 5.9e-06 25.7 5.0 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4407 PF14362.1 gi|389846473|ref|YP_006348712.1| - 0.01 14.8 1.0 0.018 14.0 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CytB6-F_Fe-S PF08802.5 gi|389846473|ref|YP_006348712.1| - 8.5 6.4 7.1 6.6 6.8 0.0 2.8 2 2 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Rdx PF10262.4 gi|389846474|ref|YP_006348713.1| - 2.3e-17 62.7 0.0 2.5e-17 62.6 0.0 1.0 1 0 0 1 1 1 1 Rdx family UbiA PF01040.13 gi|389846476|ref|YP_006348715.1| - 3.2e-27 95.3 26.2 3.2e-27 95.3 18.2 2.7 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|389846476|ref|YP_006348715.1| - 4e-20 71.9 13.5 4e-20 71.9 9.3 3.7 2 1 1 3 3 3 1 Cytochrome oxidase assembly protein Pkr1 PF08636.5 gi|389846476|ref|YP_006348715.1| - 4.8 7.3 14.9 16 5.6 0.2 5.1 5 0 0 5 5 5 0 ER protein Pkr1 COX2 PF00116.15 gi|389846477|ref|YP_006348716.1| - 7.8e-23 80.5 2.0 7.9e-22 77.3 1.4 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|389846477|ref|YP_006348716.1| - 1.4e-09 37.8 0.6 2.4e-09 37.0 0.4 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|389846477|ref|YP_006348716.1| - 0.00024 20.9 0.5 0.00078 19.2 0.0 2.2 2 1 1 3 3 3 1 Cupredoxin-like domain PTPLA PF04387.9 gi|389846477|ref|YP_006348716.1| - 0.031 13.7 0.1 0.05 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein tyrosine phosphatase-like protein, PTPLA TrbC PF04956.8 gi|389846477|ref|YP_006348716.1| - 0.052 13.5 7.3 0.16 11.9 4.8 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family Claudin_3 PF06653.6 gi|389846477|ref|YP_006348716.1| - 0.066 12.9 0.7 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 Tight junction protein, Claudin-like DUF2569 PF10754.4 gi|389846477|ref|YP_006348716.1| - 0.11 12.6 1.4 0.19 11.9 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) ETRAMP PF09716.5 gi|389846477|ref|YP_006348716.1| - 3.5 7.6 4.8 1.8 8.5 0.6 2.5 2 1 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) SepZ PF06066.6 gi|389846478|ref|YP_006348717.1| - 0.0081 16.1 0.4 0.012 15.5 0.2 1.4 1 1 0 1 1 1 1 SepZ CTP_transf_2 PF01467.21 gi|389846479|ref|YP_006348718.1| - 5.5e-13 49.2 0.4 2.5e-12 47.1 0.3 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|389846479|ref|YP_006348718.1| - 0.27 10.8 2.3 0.54 9.8 0.3 2.2 1 1 2 3 3 3 0 FAD synthetase Prok-JAB PF14464.1 gi|389846480|ref|YP_006348719.1| - 3e-12 46.0 0.0 4.2e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|389846480|ref|YP_006348719.1| - 0.00016 21.4 0.0 0.00094 18.9 0.0 1.9 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|389846480|ref|YP_006348719.1| - 0.048 13.3 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|389846480|ref|YP_006348719.1| - 0.17 11.7 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 Fructosamin_kin PF03881.9 gi|389846481|ref|YP_006348720.1| - 6.3e-49 166.4 0.0 7.8e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|389846481|ref|YP_006348720.1| - 8.1e-20 71.5 4.4 1.1e-19 71.1 3.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|389846481|ref|YP_006348720.1| - 0.00087 18.6 0.0 0.07 12.4 0.0 2.1 2 0 0 2 2 2 2 RIO1 family HTH_IclR PF09339.5 gi|389846481|ref|YP_006348720.1| - 0.1 12.2 0.0 3.7 7.1 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain DHH PF01368.15 gi|662859402|ref|YP_006348721.2| - 4e-11 42.7 0.2 8.6e-11 41.6 0.0 1.6 2 0 0 2 2 2 1 DHH family tRNA_anti-codon PF01336.20 gi|662859402|ref|YP_006348721.2| - 7e-08 32.2 0.1 1.5e-07 31.1 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|662859402|ref|YP_006348721.2| - 5.9e-06 26.2 0.3 5.9e-06 26.2 0.2 2.2 2 0 0 2 2 2 1 S1 RNA binding domain PLDc_2 PF13091.1 gi|389846483|ref|YP_006348722.1| - 2.7e-35 120.8 0.0 1.5e-18 66.7 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|389846483|ref|YP_006348722.1| - 6.1e-07 29.0 1.8 0.00025 20.7 0.3 2.7 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|389846483|ref|YP_006348722.1| - 0.00027 19.9 0.9 0.036 13.0 0.0 3.3 4 0 0 4 4 4 2 Archaeal transcriptional regulator TrmB LTD PF00932.14 gi|389846483|ref|YP_006348722.1| - 0.033 14.2 0.3 0.15 12.1 0.2 2.3 1 1 0 1 1 1 0 Lamin Tail Domain HEAT_2 PF13646.1 gi|389846484|ref|YP_006348723.1| - 2.1e-22 79.1 6.1 7.5e-13 48.5 3.4 3.9 2 1 2 4 4 4 2 HEAT repeats HEAT_PBS PF03130.11 gi|389846484|ref|YP_006348723.1| - 1.7e-14 52.7 11.5 7.8e-06 25.8 0.5 6.9 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|389846484|ref|YP_006348723.1| - 6.2e-08 32.9 3.3 0.0021 18.5 0.3 3.8 3 1 1 4 4 4 2 HEAT-like repeat HEAT PF02985.17 gi|389846484|ref|YP_006348723.1| - 1.5e-06 27.7 0.4 0.18 11.9 0.1 3.7 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.18 gi|389846484|ref|YP_006348723.1| - 0.00017 21.2 0.1 0.53 10.1 0.0 3.4 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat EntA_Immun PF08951.5 gi|389846484|ref|YP_006348723.1| - 0.02 15.0 1.3 0.14 12.3 0.0 2.7 2 0 0 2 2 2 0 Enterocin A Immunity DUF2309 PF10070.4 gi|389846484|ref|YP_006348723.1| - 0.15 10.0 1.3 0.19 9.7 0.9 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) TBPIP PF07106.8 gi|389846484|ref|YP_006348723.1| - 0.38 10.2 2.6 0.51 9.8 1.0 1.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF883 PF05957.8 gi|389846484|ref|YP_006348723.1| - 9.7 6.6 10.7 1.7 9.0 0.5 3.4 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) CN_hydrolase PF00795.17 gi|389846485|ref|YP_006348724.1| - 4.9e-20 71.6 0.0 6.7e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Oxidored_FMN PF00724.15 gi|389846486|ref|YP_006348725.1| - 5.6e-73 245.8 0.0 6.4e-73 245.6 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|389846486|ref|YP_006348725.1| - 0.011 14.9 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF848 PF05852.6 gi|389846487|ref|YP_006348726.1| - 0.25 11.1 4.4 0.77 9.5 0.7 2.3 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF35 PF01796.12 gi|389846488|ref|YP_006348727.1| - 2.1e-08 34.2 1.9 2.9e-08 33.8 1.2 1.4 1 1 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|389846489|ref|YP_006348728.1| - 3.1e-08 33.0 0.0 6.3e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|389846489|ref|YP_006348728.1| - 1.3e-05 24.3 0.1 3.5e-05 22.9 0.1 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|389846489|ref|YP_006348728.1| - 0.00062 19.6 0.3 4.5 7.1 0.0 3.4 3 0 0 3 3 3 3 Beta-ketoacyl synthase, C-terminal domain DUF4131 PF13567.1 gi|389846490|ref|YP_006348729.1| - 0.075 12.4 5.4 0.11 11.9 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) MttA_Hcf106 PF02416.11 gi|389846491|ref|YP_006348730.1| - 2.4e-14 52.1 3.4 3.3e-14 51.7 2.3 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family TRAP_alpha PF03896.11 gi|389846491|ref|YP_006348730.1| - 0.11 11.5 1.4 0.12 11.3 1.0 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit DUF4446 PF14584.1 gi|389846491|ref|YP_006348730.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF4382 PF14321.1 gi|662859403|ref|YP_006348731.2| - 7.3e-19 68.2 21.5 1.5e-16 60.7 0.5 3.4 2 2 1 3 3 3 2 Domain of unknown function (DUF4382) DUF1943 PF09172.6 gi|662859403|ref|YP_006348731.2| - 0.019 13.8 2.2 1.5 7.6 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1943) T2SN PF01203.14 gi|662859403|ref|YP_006348731.2| - 0.033 13.7 4.2 0.058 12.9 0.1 2.6 2 1 0 3 3 3 0 Type II secretion system (T2SS), protein N DUF4480 PF13715.1 gi|662859403|ref|YP_006348731.2| - 0.092 12.7 0.4 0.092 12.7 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4480) SPX PF03105.14 gi|662859403|ref|YP_006348731.2| - 4.3 7.0 8.8 1.4 8.6 3.3 2.0 2 0 0 2 2 2 0 SPX domain Pyr_redox_2 PF07992.9 gi|389846493|ref|YP_006348732.1| - 3.4e-22 79.3 0.0 4.5e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389846493|ref|YP_006348732.1| - 5.9e-08 33.0 0.1 0.0031 17.5 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389846493|ref|YP_006348732.1| - 2.7e-06 26.5 2.4 9.9e-05 21.3 0.7 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389846493|ref|YP_006348732.1| - 3.5e-06 26.1 2.4 0.00038 19.4 0.3 2.4 2 1 0 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|389846493|ref|YP_006348732.1| - 5.7e-05 22.1 0.2 0.00013 20.9 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|389846493|ref|YP_006348732.1| - 7.2e-05 23.1 0.1 0.0049 17.2 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|389846493|ref|YP_006348732.1| - 0.00026 20.2 0.1 0.00036 19.7 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|389846493|ref|YP_006348732.1| - 0.00032 19.3 0.2 0.0031 16.0 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|389846493|ref|YP_006348732.1| - 0.0012 17.9 0.5 0.002 17.2 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.1 gi|389846493|ref|YP_006348732.1| - 0.0068 15.3 0.0 0.069 12.0 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|389846493|ref|YP_006348732.1| - 0.0084 15.2 0.0 0.016 14.3 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|389846493|ref|YP_006348732.1| - 0.014 15.4 1.8 0.021 14.8 0.5 2.0 2 1 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|389846493|ref|YP_006348732.1| - 0.023 14.4 0.5 0.6 9.8 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Methyltransf_11 PF08241.7 gi|389846494|ref|YP_006348733.1| - 2.2e-22 79.3 0.1 3.9e-22 78.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846494|ref|YP_006348733.1| - 2e-16 60.2 0.1 5.1e-16 58.8 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846494|ref|YP_006348733.1| - 1.6e-12 47.9 0.2 2.8e-12 47.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846494|ref|YP_006348733.1| - 3.4e-12 46.1 0.0 4.9e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846494|ref|YP_006348733.1| - 2.5e-11 43.9 0.0 6.1e-11 42.6 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846494|ref|YP_006348733.1| - 7.9e-11 41.5 0.0 1e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|389846494|ref|YP_006348733.1| - 1.4e-07 31.4 0.0 1.8e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|389846494|ref|YP_006348733.1| - 1.1e-05 24.0 0.0 1.4e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|389846494|ref|YP_006348733.1| - 1.1e-05 25.3 1.2 2.6e-05 24.2 0.9 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|389846494|ref|YP_006348733.1| - 4.5e-05 22.9 0.0 6.1e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|389846494|ref|YP_006348733.1| - 6.9e-05 22.3 0.0 9.9e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|389846494|ref|YP_006348733.1| - 0.0009 18.0 0.0 0.0012 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|389846494|ref|YP_006348733.1| - 0.0052 16.4 0.0 0.028 14.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.9 gi|389846494|ref|YP_006348733.1| - 0.0091 15.1 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|389846494|ref|YP_006348733.1| - 0.01 14.8 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.9 gi|389846494|ref|YP_006348733.1| - 0.023 14.0 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|389846494|ref|YP_006348733.1| - 0.034 13.8 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain AdoMet_MTase PF07757.8 gi|389846494|ref|YP_006348733.1| - 0.048 13.7 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 1 0 Predicted AdoMet-dependent methyltransferase TPMT PF05724.6 gi|389846494|ref|YP_006348733.1| - 0.083 12.3 0.1 0.16 11.4 0.1 1.6 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|389846494|ref|YP_006348733.1| - 0.095 11.6 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) T2SF PF00482.18 gi|389846495|ref|YP_006348734.1| - 2.4e-36 124.3 3.2 3.4e-22 78.6 0.2 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Translin PF01997.11 gi|389846495|ref|YP_006348734.1| - 0.0082 15.7 0.0 0.14 11.7 0.0 2.2 2 0 0 2 2 2 1 Translin family DUF2384 PF09722.5 gi|389846495|ref|YP_006348734.1| - 0.013 15.3 0.7 0.051 13.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DUF2207 PF09972.4 gi|389846495|ref|YP_006348734.1| - 0.014 14.0 0.1 0.23 9.9 0.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) T2SE PF00437.15 gi|389846496|ref|YP_006348735.1| - 2.5e-46 157.7 0.0 3.5e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|389846496|ref|YP_006348735.1| - 0.022 14.2 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0233 PF06781.7 gi|389846497|ref|YP_006348736.1| - 2.4 7.8 5.1 1.3 8.7 0.7 2.5 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0233) UDG PF03167.14 gi|389846499|ref|YP_006348738.1| - 9.6e-09 34.8 0.0 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4098 PF13345.1 gi|389846500|ref|YP_006348739.1| - 2.7e-10 40.0 30.8 5.2e-06 26.3 7.5 4.0 2 1 0 3 3 3 2 Domain of unknown function (DUF4098) TAT_signal PF10518.4 gi|389846500|ref|YP_006348739.1| - 0.025 14.5 4.8 0.061 13.3 3.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.22 gi|389846501|ref|YP_006348740.1| - 1.5e-25 90.0 4.0 1.8e-25 89.7 2.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389846501|ref|YP_006348740.1| - 0.00028 20.5 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|389846501|ref|YP_006348740.1| - 0.039 13.6 0.1 0.059 13.0 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PQQ_3 PF13570.1 gi|389846501|ref|YP_006348740.1| - 4.5 7.6 6.8 18 5.8 0.0 3.0 3 0 0 3 3 3 0 PQQ-like domain DnaJ PF00226.26 gi|662859404|ref|YP_006348741.2| - 2e-21 75.4 0.7 3e-21 74.8 0.5 1.3 1 0 0 1 1 1 1 DnaJ domain SOBP PF15279.1 gi|662859404|ref|YP_006348741.2| - 0.055 13.8 9.0 0.068 13.5 6.2 1.2 1 0 0 1 1 1 0 Sine oculis-binding protein Macoilin PF09726.4 gi|662859404|ref|YP_006348741.2| - 0.23 9.6 24.9 0.36 9.0 17.3 1.3 1 0 0 1 1 1 0 Transmembrane protein DUF4603 PF15376.1 gi|662859404|ref|YP_006348741.2| - 0.49 7.5 20.1 0.61 7.2 13.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) DUF605 PF04652.11 gi|662859404|ref|YP_006348741.2| - 0.92 8.8 19.3 1.2 8.4 13.4 1.1 1 0 0 1 1 1 0 Vta1 like Hid1 PF12722.2 gi|662859404|ref|YP_006348741.2| - 1.7 6.2 13.4 2 5.9 9.3 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Lactamase_B PF00753.22 gi|389846503|ref|YP_006348742.1| - 2.5e-23 82.7 8.5 4.1e-23 82.0 5.9 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389846503|ref|YP_006348742.1| - 1.1e-05 25.1 0.0 1.1e-05 25.1 0.0 1.6 1 1 0 2 2 2 1 Beta-lactamase superfamily domain GST_C_2 PF13410.1 gi|389846503|ref|YP_006348742.1| - 0.02 14.8 0.1 2 8.3 0.0 2.5 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain RNA_pol_L_2 PF13656.1 gi|389846504|ref|YP_006348743.1| - 2.9e-17 61.8 0.0 3.4e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|389846504|ref|YP_006348743.1| - 2e-06 26.7 0.0 2.6e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1684 PF07920.6 gi|389846505|ref|YP_006348744.1| - 1.2e-51 174.3 0.0 1.5e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) His_biosynth PF00977.16 gi|389846506|ref|YP_006348745.1| - 1e-80 270.3 0.1 1.2e-80 270.1 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|389846506|ref|YP_006348745.1| - 1.4e-09 37.2 0.0 1.6e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|389846506|ref|YP_006348745.1| - 4.8e-08 32.3 0.1 4.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|389846506|ref|YP_006348745.1| - 7.2e-06 25.3 0.1 0.0015 17.7 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|389846506|ref|YP_006348745.1| - 6.5e-05 22.2 0.2 0.00025 20.3 0.1 1.9 1 1 1 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|389846506|ref|YP_006348745.1| - 0.00074 18.5 0.0 0.0051 15.8 0.0 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|389846506|ref|YP_006348745.1| - 0.0088 15.1 0.1 0.21 10.6 0.0 2.2 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|389846506|ref|YP_006348745.1| - 0.015 14.1 0.8 0.02 13.7 0.1 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|389846506|ref|YP_006348745.1| - 0.041 12.9 0.0 0.33 9.9 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.7 gi|389846506|ref|YP_006348745.1| - 0.044 12.8 0.0 0.085 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator Glu_synthase PF01645.12 gi|389846506|ref|YP_006348745.1| - 0.046 12.6 0.0 0.08 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|389846506|ref|YP_006348745.1| - 0.06 12.1 0.2 0.12 11.1 0.1 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Glyoxalase_4 PF13669.1 gi|389846507|ref|YP_006348746.1| - 8.1e-07 29.0 0.1 2.3e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389846507|ref|YP_006348746.1| - 0.0082 16.7 0.2 0.062 13.9 0.1 2.2 1 1 0 1 1 1 1 Glyoxalase-like domain Alpha-amylase PF00128.19 gi|389846508|ref|YP_006348747.1| - 6.8e-96 321.3 0.8 1.1e-95 320.7 0.5 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|389846508|ref|YP_006348747.1| - 2.8e-05 24.1 0.0 7.4e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) AIRS_C PF02769.17 gi|389846510|ref|YP_006348749.1| - 1e-40 139.2 11.0 1.2e-26 93.5 0.6 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|389846510|ref|YP_006348749.1| - 4.3e-40 135.8 10.5 5.1e-24 84.3 0.2 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain CBS PF00571.23 gi|389846511|ref|YP_006348750.1| - 3e-27 94.1 3.1 2.2e-15 56.1 0.0 2.1 2 0 0 2 2 2 2 CBS domain PHP_C PF13263.1 gi|389846512|ref|YP_006348751.1| - 7.1e-22 76.6 0.6 2.4e-21 74.9 0.3 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|389846512|ref|YP_006348751.1| - 1.7e-17 63.7 0.1 4.4e-17 62.4 0.1 1.9 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.16 gi|389846513|ref|YP_006348752.1| - 7.6e-41 140.2 0.5 1.3e-40 139.5 0.3 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|389846513|ref|YP_006348752.1| - 0.025 13.4 0.2 0.045 12.6 0.2 1.4 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|389846513|ref|YP_006348752.1| - 0.16 10.5 0.1 0.23 9.9 0.1 1.4 1 0 0 1 1 1 0 tRNA methyl transferase NUDIX PF00293.23 gi|389846514|ref|YP_006348753.1| - 5.3e-12 45.5 0.0 7.4e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.14 gi|662859406|ref|YP_006348754.2| - 1.6e-42 143.1 0.3 4.8e-21 74.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|662859406|ref|YP_006348754.2| - 2.3e-18 65.2 2.2 7.5e-18 63.5 1.9 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|662859406|ref|YP_006348754.2| - 0.0072 15.5 0.5 0.013 14.7 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain RRN7 PF11781.3 gi|662859406|ref|YP_006348754.2| - 0.0085 15.5 0.8 0.016 14.7 0.5 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Ribosomal_S27e PF01667.12 gi|662859406|ref|YP_006348754.2| - 0.013 15.0 0.7 0.023 14.2 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|662859406|ref|YP_006348754.2| - 0.016 15.0 1.2 0.031 14.0 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|662859406|ref|YP_006348754.2| - 0.019 14.4 1.3 0.053 12.9 0.9 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain Cyclin_C PF02984.14 gi|662859406|ref|YP_006348754.2| - 0.023 14.6 0.1 4 7.3 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.1 gi|662859406|ref|YP_006348754.2| - 0.039 14.2 0.8 0.039 14.2 0.5 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|662859406|ref|YP_006348754.2| - 0.045 13.2 0.4 0.13 11.8 0.3 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain YpzI PF14140.1 gi|662859406|ref|YP_006348754.2| - 0.059 12.8 0.3 0.059 12.8 0.2 2.5 2 0 0 2 2 2 0 YpzI-like protein Zn-ribbon_8 PF09723.5 gi|662859406|ref|YP_006348754.2| - 0.061 13.2 3.9 0.18 11.7 2.5 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|662859406|ref|YP_006348754.2| - 0.071 12.9 0.2 0.19 11.6 0.2 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family Cyclin_N PF00134.18 gi|662859406|ref|YP_006348754.2| - 0.082 12.4 0.1 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 Cyclin, N-terminal domain Prim_Zn_Ribbon PF08273.7 gi|662859406|ref|YP_006348754.2| - 0.11 12.5 0.2 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Sigma70_r4 PF04545.11 gi|662859406|ref|YP_006348754.2| - 0.34 10.2 0.0 0.34 10.2 0.0 3.9 5 0 0 5 5 5 0 Sigma-70, region 4 PhnA_Zn_Ribbon PF08274.7 gi|662859406|ref|YP_006348754.2| - 4.4 7.1 5.7 16 5.3 4.0 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Glu-tRNAGln PF02686.10 gi|389846516|ref|YP_006348755.1| - 2.8e-19 68.6 2.3 5.2e-19 67.8 1.6 1.5 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit YL1 PF05764.8 gi|389846516|ref|YP_006348755.1| - 0.27 10.7 2.1 0.18 11.4 0.5 1.4 1 1 0 1 1 1 0 YL1 nuclear protein Amidase PF01425.16 gi|389846517|ref|YP_006348756.1| - 5.1e-146 486.9 1.0 6e-146 486.7 0.7 1.0 1 0 0 1 1 1 1 Amidase CARDB PF07705.6 gi|389846518|ref|YP_006348757.1| - 0.00027 20.9 0.2 0.00072 19.5 0.0 1.8 2 0 0 2 2 2 1 CARDB Transglut_C PF00927.17 gi|389846518|ref|YP_006348757.1| - 0.052 13.5 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain TAT_signal PF10518.4 gi|389846518|ref|YP_006348757.1| - 0.19 11.8 0.8 0.45 10.6 0.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TrkA_N PF02254.13 gi|389846519|ref|YP_006348758.1| - 2.1e-27 95.4 2.6 3.7e-27 94.6 1.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|389846519|ref|YP_006348758.1| - 9.4e-15 53.9 1.9 8.5e-14 50.9 0.2 2.5 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|389846519|ref|YP_006348758.1| - 2.3e-06 27.9 1.0 4.4e-06 27.0 0.4 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|389846519|ref|YP_006348758.1| - 4.9e-06 26.7 0.5 8.5e-06 25.9 0.3 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|389846519|ref|YP_006348758.1| - 3.4e-05 24.1 0.6 6.1e-05 23.3 0.1 1.6 2 0 0 2 2 2 1 XdhC Rossmann domain ADH_zinc_N PF00107.21 gi|389846519|ref|YP_006348758.1| - 4.2e-05 23.1 0.3 0.014 14.9 0.8 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.10 gi|389846519|ref|YP_006348758.1| - 4.5e-05 23.3 0.2 6.5e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|389846519|ref|YP_006348758.1| - 0.0001 22.4 0.7 0.00017 21.6 0.5 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|389846519|ref|YP_006348758.1| - 0.00011 21.9 0.3 0.00015 21.4 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|389846519|ref|YP_006348758.1| - 0.00022 20.3 0.8 0.0004 19.4 0.4 1.5 1 1 1 2 2 2 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|389846519|ref|YP_006348758.1| - 0.0003 20.8 0.5 0.00054 20.0 0.4 1.5 1 0 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|389846519|ref|YP_006348758.1| - 0.0014 18.0 1.6 0.016 14.5 0.3 2.1 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.17 gi|389846519|ref|YP_006348758.1| - 0.0018 18.7 0.4 0.0033 17.9 0.3 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_3 PF13377.1 gi|389846519|ref|YP_006348758.1| - 0.002 18.1 0.2 0.0031 17.5 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Pyr_redox PF00070.22 gi|389846519|ref|YP_006348758.1| - 0.0021 18.4 1.5 0.011 16.1 0.6 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|389846519|ref|YP_006348758.1| - 0.0062 15.8 0.2 0.011 14.9 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family ApbA PF02558.11 gi|389846519|ref|YP_006348758.1| - 0.0066 15.9 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|389846519|ref|YP_006348758.1| - 0.01 15.5 0.5 0.017 14.8 0.4 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.5 gi|389846519|ref|YP_006348758.1| - 0.014 15.1 0.2 0.018 14.6 0.1 1.2 1 0 0 1 1 1 0 KR domain 2-Hacid_dh_C PF02826.14 gi|389846519|ref|YP_006348758.1| - 0.027 13.6 0.1 0.051 12.7 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PK_C PF02887.11 gi|389846519|ref|YP_006348758.1| - 0.033 13.7 0.3 0.11 12.0 0.0 2.0 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain DRTGG PF07085.7 gi|389846519|ref|YP_006348758.1| - 0.033 13.7 0.7 0.095 12.3 0.5 1.8 1 1 0 1 1 1 0 DRTGG domain Methyltransf_26 PF13659.1 gi|389846519|ref|YP_006348758.1| - 0.14 12.2 0.1 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CPSase_L_chain PF00289.17 gi|389846519|ref|YP_006348758.1| - 0.15 12.1 0.6 0.81 9.8 0.1 2.1 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ThiF PF00899.16 gi|389846519|ref|YP_006348758.1| - 1.3 8.8 4.2 9.6 6.0 0.3 2.3 1 1 1 2 2 2 0 ThiF family TrkH PF02386.11 gi|389846520|ref|YP_006348759.1| - 2.2e-73 246.8 18.4 1.7e-72 243.9 5.6 3.2 3 1 1 4 4 4 2 Cation transport protein TrkH PF02386.11 gi|389846521|ref|YP_006348760.1| - 1.4e-55 188.2 12.6 2.1e-55 187.7 3.8 2.2 2 0 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|389846522|ref|YP_006348761.1| - 7.7e-52 174.2 8.6 4.1e-29 100.9 0.7 3.0 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|389846522|ref|YP_006348761.1| - 2.2e-32 110.4 5.0 5.7e-16 57.8 0.1 3.2 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.15 gi|389846522|ref|YP_006348761.1| - 2e-10 40.8 0.4 0.00037 20.5 0.1 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|389846522|ref|YP_006348761.1| - 5.1e-10 39.5 0.7 0.00014 22.0 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|389846522|ref|YP_006348761.1| - 4.9e-08 32.3 1.3 0.0004 19.4 0.1 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|389846522|ref|YP_006348761.1| - 3.3e-07 29.6 0.0 0.0088 15.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|389846522|ref|YP_006348761.1| - 1.7e-06 27.5 0.0 6.6e-06 25.6 0.1 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|389846522|ref|YP_006348761.1| - 1.8e-06 28.2 0.2 0.0026 18.1 0.1 3.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|389846522|ref|YP_006348761.1| - 9.6e-06 25.4 0.0 0.0022 17.7 0.0 2.7 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|389846522|ref|YP_006348761.1| - 6.9e-05 22.5 0.1 0.012 15.2 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|389846522|ref|YP_006348761.1| - 0.00017 21.5 0.7 0.13 12.1 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846522|ref|YP_006348761.1| - 0.00047 20.5 0.1 0.94 9.9 0.0 3.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_chain PF00289.17 gi|389846522|ref|YP_006348761.1| - 0.0021 18.1 0.0 0.8 9.8 0.0 2.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ApbA PF02558.11 gi|389846522|ref|YP_006348761.1| - 0.0031 16.9 0.0 0.02 14.3 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|389846522|ref|YP_006348761.1| - 0.0032 16.4 0.1 1.1 8.1 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|389846522|ref|YP_006348761.1| - 0.0035 17.2 0.0 0.54 10.0 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|389846522|ref|YP_006348761.1| - 0.0035 17.6 0.1 0.34 11.2 0.0 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|389846522|ref|YP_006348761.1| - 0.0045 16.1 0.0 2.9 6.9 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEM4 PF02602.10 gi|389846522|ref|YP_006348761.1| - 0.0046 16.2 0.1 0.05 12.8 0.0 2.4 1 1 1 2 2 2 1 Uroporphyrinogen-III synthase HemD DUF1188 PF06690.6 gi|389846522|ref|YP_006348761.1| - 0.0058 15.7 0.0 0.015 14.4 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Oxidored_nitro PF00148.14 gi|389846522|ref|YP_006348761.1| - 0.009 14.6 0.0 0.027 13.1 0.0 1.8 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase ThiF PF00899.16 gi|389846522|ref|YP_006348761.1| - 0.034 13.9 7.2 1.8 8.3 0.3 4.3 2 2 2 4 4 4 0 ThiF family AdoHcyase_NAD PF00670.16 gi|389846522|ref|YP_006348761.1| - 0.04 13.7 0.7 0.13 12.1 0.5 1.9 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lycopene_cycl PF05834.7 gi|389846522|ref|YP_006348761.1| - 0.13 11.1 0.3 0.37 9.6 0.0 1.9 3 0 0 3 3 3 0 Lycopene cyclase protein Polyketide_cyc2 PF10604.4 gi|389846523|ref|YP_006348762.1| - 9.9e-12 45.2 0.8 1.2e-11 44.9 0.5 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|389846523|ref|YP_006348762.1| - 7.8e-08 32.3 0.3 1.6e-07 31.3 0.2 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|389846523|ref|YP_006348762.1| - 0.00027 21.0 0.2 0.00036 20.6 0.1 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DAO PF01266.19 gi|389846525|ref|YP_006348764.1| - 1e-10 41.0 7.3 1.5e-05 24.0 1.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389846525|ref|YP_006348764.1| - 1.7e-10 40.3 4.8 1.7e-07 30.4 0.9 2.4 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|389846525|ref|YP_006348764.1| - 4.5e-09 36.4 1.7 5.1e-05 23.2 0.3 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389846525|ref|YP_006348764.1| - 5.5e-06 26.3 0.4 1.3e-05 25.1 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|389846525|ref|YP_006348764.1| - 5.8e-06 25.5 2.2 1.8e-05 23.9 1.1 2.0 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|389846525|ref|YP_006348764.1| - 0.00019 20.3 0.4 0.00036 19.5 0.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|389846525|ref|YP_006348764.1| - 0.0019 18.5 0.5 0.0047 17.2 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|389846525|ref|YP_006348764.1| - 0.002 17.2 2.3 0.002 17.2 1.6 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|389846525|ref|YP_006348764.1| - 0.0026 16.9 0.1 0.0052 15.8 0.1 1.5 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|389846525|ref|YP_006348764.1| - 0.0036 15.8 0.2 0.0063 15.0 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|389846525|ref|YP_006348764.1| - 0.0091 14.6 3.6 0.41 9.2 1.3 2.4 2 1 1 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|389846525|ref|YP_006348764.1| - 0.014 14.2 0.4 0.038 12.9 0.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|389846525|ref|YP_006348764.1| - 0.026 14.6 1.0 0.04 13.9 0.4 1.6 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|389846525|ref|YP_006348764.1| - 0.095 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|389846525|ref|YP_006348764.1| - 0.1 12.4 0.3 0.22 11.3 0.2 1.6 1 0 0 1 1 1 0 ThiF family DFP PF04127.10 gi|389846526|ref|YP_006348765.1| - 1.6e-46 158.2 5.2 5e-46 156.6 1.5 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|389846526|ref|YP_006348765.1| - 5.9e-28 97.1 1.0 1.2e-27 96.1 0.1 1.9 2 0 0 2 2 2 1 Flavoprotein NAD_binding_10 PF13460.1 gi|389846526|ref|YP_006348765.1| - 0.0044 17.0 4.2 0.0044 17.0 2.9 2.6 3 1 0 3 3 3 1 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|389846526|ref|YP_006348765.1| - 0.0098 16.0 9.4 0.55 10.3 2.8 3.2 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|389846526|ref|YP_006348765.1| - 0.024 14.7 2.0 0.046 13.8 0.1 2.3 3 0 0 3 3 3 0 Glycosyl transferases group 1 Peripla_BP_4 PF13407.1 gi|389846526|ref|YP_006348765.1| - 3 7.1 11.9 6.6 6.0 0.1 3.4 3 1 0 3 3 3 0 Periplasmic binding protein domain PhaG_MnhG_YufB PF03334.9 gi|389846527|ref|YP_006348766.1| - 2.3e-24 85.2 8.1 3.3e-24 84.7 5.6 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|389846529|ref|YP_006348768.1| - 8.2e-19 67.6 3.0 8.2e-19 67.6 2.0 1.5 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|389846529|ref|YP_006348768.1| - 0.22 11.5 4.1 0.31 11.1 2.8 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter subunit MNHE PF01899.11 gi|389846530|ref|YP_006348769.1| - 1.2e-43 148.3 0.5 1.4e-43 148.1 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|389846531|ref|YP_006348770.1| - 4.1e-48 163.9 11.1 4.1e-48 163.9 7.7 3.2 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|389846531|ref|YP_006348770.1| - 0.0019 17.7 2.3 0.0063 16.0 1.6 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|389846532|ref|YP_006348771.1| - 1.7e-26 91.6 0.7 2.1e-26 91.3 0.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1049 PF06305.6 gi|389846532|ref|YP_006348771.1| - 6.3 6.3 7.1 7.6 6.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) MnhB PF04039.8 gi|389846533|ref|YP_006348772.1| - 7.8e-25 87.3 11.1 1.5e-22 79.9 7.7 2.0 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter FTCD_C PF04961.7 gi|389846533|ref|YP_006348772.1| - 0.13 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase ABC2_membrane_3 PF12698.2 gi|389846533|ref|YP_006348772.1| - 5.5 5.9 9.3 0.12 11.3 1.5 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein Oxidored_q1 PF00361.15 gi|389846534|ref|YP_006348773.1| - 5.6e-67 225.8 11.8 5.6e-67 225.8 8.2 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|389846534|ref|YP_006348773.1| - 2.2e-14 53.1 12.0 2.2e-14 53.1 8.3 4.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|389846534|ref|YP_006348773.1| - 2.7e-08 33.2 0.2 1.6e-07 30.7 0.0 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_20 PF12840.2 gi|662859408|ref|YP_006348774.2| - 1e-08 34.8 1.0 1.7e-08 34.1 0.5 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|662859408|ref|YP_006348774.2| - 2.4e-08 33.5 0.0 5.7e-08 32.3 0.0 1.5 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|662859408|ref|YP_006348774.2| - 3.7e-06 26.2 0.0 6.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|662859408|ref|YP_006348774.2| - 6.4e-06 25.7 0.4 1.8e-05 24.2 0.2 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|662859408|ref|YP_006348774.2| - 0.00016 21.2 0.0 0.0003 20.3 0.0 1.5 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|662859408|ref|YP_006348774.2| - 0.00019 21.6 0.1 0.0007 19.8 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|662859408|ref|YP_006348774.2| - 0.00022 20.8 0.1 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|662859408|ref|YP_006348774.2| - 0.00033 20.1 0.0 0.00054 19.5 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|662859408|ref|YP_006348774.2| - 0.00086 18.8 0.6 0.0046 16.5 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|662859408|ref|YP_006348774.2| - 0.0011 18.5 0.8 0.0027 17.2 0.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|662859408|ref|YP_006348774.2| - 0.0049 16.5 0.0 0.0075 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|662859408|ref|YP_006348774.2| - 0.0095 15.6 0.0 0.025 14.3 0.0 1.7 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|662859408|ref|YP_006348774.2| - 0.016 15.3 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix FUR PF01475.14 gi|662859408|ref|YP_006348774.2| - 0.025 14.4 0.0 0.044 13.7 0.0 1.4 1 1 1 2 2 2 0 Ferric uptake regulator family RP-C PF03428.8 gi|662859408|ref|YP_006348774.2| - 0.032 13.7 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain NifZ PF04319.8 gi|662859408|ref|YP_006348774.2| - 0.092 12.1 0.0 0.18 11.1 0.0 1.5 1 1 0 1 1 1 0 NifZ domain DUF742 PF05331.6 gi|662859408|ref|YP_006348774.2| - 0.11 12.0 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FIST_C PF10442.4 gi|662859409|ref|YP_006348775.2| - 0.041 13.8 0.0 0.05 13.5 0.0 1.2 1 0 0 1 1 1 0 FIST C domain Pribosyltran PF00156.22 gi|389846537|ref|YP_006348776.1| - 2.8e-18 65.8 1.3 2.8e-18 65.8 0.9 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|389846537|ref|YP_006348776.1| - 0.012 14.7 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_3 PF15610.1 gi|389846537|ref|YP_006348776.1| - 0.11 11.3 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 PRTase ComF-like EIIA-man PF03610.11 gi|389846537|ref|YP_006348776.1| - 1.2 9.2 4.2 3.4 7.7 0.5 2.4 1 1 1 2 2 2 0 PTS system fructose IIA component SBP_bac_5 PF00496.17 gi|389846538|ref|YP_006348777.1| - 8.1e-43 146.6 6.7 3.2e-35 121.6 2.3 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|389846538|ref|YP_006348777.1| - 0.0021 17.9 0.2 0.0039 17.0 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|389846539|ref|YP_006348778.1| - 3.5e-33 114.6 14.0 3.5e-33 114.6 9.7 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|389846539|ref|YP_006348778.1| - 1.5 8.6 20.6 0.052 13.2 3.4 3.1 3 0 0 3 3 3 0 FtsX-like permease family BPD_transp_1 PF00528.17 gi|389846540|ref|YP_006348779.1| - 3.9e-28 98.2 3.5 3.9e-28 98.2 2.4 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389846540|ref|YP_006348779.1| - 4.5e-10 38.7 0.5 4.5e-10 38.7 0.4 2.8 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C SpoVAB PF13782.1 gi|389846540|ref|YP_006348779.1| - 0.08 12.9 3.3 2.3 8.2 0.1 2.5 2 0 0 2 2 2 0 Stage V sporulation protein AB Phage_holin_1 PF04531.8 gi|389846540|ref|YP_006348779.1| - 5.4 7.1 7.6 16 5.6 0.1 3.5 4 0 0 4 4 4 0 Bacteriophage holin ABC_tran PF00005.22 gi|389846541|ref|YP_006348780.1| - 8.1e-26 90.9 0.0 1.1e-25 90.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389846541|ref|YP_006348780.1| - 5.1e-19 68.3 1.4 9.9e-19 67.4 0.5 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389846541|ref|YP_006348780.1| - 5.8e-10 39.6 0.0 1.9e-08 34.6 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389846541|ref|YP_006348780.1| - 0.00013 22.0 0.9 0.0021 18.1 0.7 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|389846541|ref|YP_006348780.1| - 0.002 16.7 0.8 0.0067 15.0 0.6 1.7 1 1 0 1 1 1 1 Predicted ATPase of the ABC class SMC_N PF02463.14 gi|389846541|ref|YP_006348780.1| - 0.0021 17.3 0.2 0.21 10.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|389846541|ref|YP_006348780.1| - 0.003 17.5 0.2 0.0066 16.4 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|389846541|ref|YP_006348780.1| - 0.0034 16.8 0.0 0.2 11.0 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|389846541|ref|YP_006348780.1| - 0.0074 15.7 0.2 0.057 12.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389846541|ref|YP_006348780.1| - 0.016 14.6 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|389846541|ref|YP_006348780.1| - 0.019 14.4 0.1 0.031 13.7 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|389846541|ref|YP_006348780.1| - 0.026 13.5 0.0 0.065 12.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|389846541|ref|YP_006348780.1| - 0.042 14.0 0.0 0.15 12.2 0.0 1.9 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|389846541|ref|YP_006348780.1| - 0.048 13.1 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|389846541|ref|YP_006348780.1| - 0.079 13.2 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389846541|ref|YP_006348780.1| - 0.095 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|389846541|ref|YP_006348780.1| - 0.12 11.9 0.6 1.6 8.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|389846542|ref|YP_006348781.1| - 8.5e-32 110.3 0.0 1.4e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389846542|ref|YP_006348781.1| - 2.8e-19 69.2 0.1 5.7e-19 68.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389846542|ref|YP_006348781.1| - 4.7e-08 33.3 0.0 2e-06 27.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389846542|ref|YP_006348781.1| - 0.00014 21.9 0.0 0.0008 19.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389846542|ref|YP_006348781.1| - 0.0067 15.8 0.1 0.022 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|389846542|ref|YP_006348781.1| - 0.036 13.5 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389846542|ref|YP_006348781.1| - 0.047 12.8 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389846542|ref|YP_006348781.1| - 0.076 12.4 0.6 7.9 5.8 0.0 2.9 2 1 0 3 3 3 0 AAA-like domain AAA_16 PF13191.1 gi|389846542|ref|YP_006348781.1| - 0.083 12.8 2.2 0.087 12.8 0.4 2.1 2 1 0 2 2 2 0 AAA ATPase domain DUF2909 PF11137.3 gi|389846542|ref|YP_006348781.1| - 0.11 12.2 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) ATP-synt_ab PF00006.20 gi|389846542|ref|YP_006348781.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|389846542|ref|YP_006348781.1| - 0.19 10.1 0.0 0.6 8.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DJ-1_PfpI PF01965.19 gi|389846543|ref|YP_006348782.1| - 3.7e-17 62.1 0.1 1e-16 60.6 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|389846543|ref|YP_006348782.1| - 0.03 13.9 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|389846543|ref|YP_006348782.1| - 0.089 12.0 0.2 0.68 9.1 0.0 2.1 2 0 0 2 2 2 0 Putative amidotransferase ThuA PF06283.6 gi|389846543|ref|YP_006348782.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation HTH_20 PF12840.2 gi|389846544|ref|YP_006348783.1| - 2.1e-05 24.2 0.1 4.5e-05 23.1 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389846544|ref|YP_006348783.1| - 2.3e-05 23.9 0.0 3.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389846544|ref|YP_006348783.1| - 0.0084 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389846544|ref|YP_006348783.1| - 0.017 14.7 0.1 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|389846544|ref|YP_006348783.1| - 0.021 14.4 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|389846544|ref|YP_006348783.1| - 0.045 13.1 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF937 PF06078.6 gi|389846544|ref|YP_006348783.1| - 0.067 13.4 0.1 0.077 13.2 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF937) HTH_Tnp_ISL3 PF13542.1 gi|389846544|ref|YP_006348783.1| - 0.067 12.3 0.2 0.099 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.7 gi|389846544|ref|YP_006348783.1| - 0.097 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain zf-ISL3 PF14690.1 gi|389846544|ref|YP_006348783.1| - 0.17 11.9 1.4 8.1 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|389846544|ref|YP_006348783.1| - 0.34 10.1 3.5 5.1 6.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389846544|ref|YP_006348783.1| - 0.66 9.5 4.5 3.8 7.1 0.2 2.2 1 1 2 3 3 3 0 zinc-ribbon domain zf-trcl PF13451.1 gi|389846544|ref|YP_006348783.1| - 1.4 8.6 6.4 0.27 10.8 0.6 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Zn-ribbon_8 PF09723.5 gi|389846544|ref|YP_006348783.1| - 1.4 8.8 5.0 2.7 8.0 2.6 2.1 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|389846544|ref|YP_006348783.1| - 5.4 6.8 7.1 7.8 6.2 1.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NTP_transferase PF00483.18 gi|389846545|ref|YP_006348784.1| - 1.8e-37 129.0 0.0 2.4e-37 128.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389846545|ref|YP_006348784.1| - 2.4e-09 37.4 0.0 3.3e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|389846545|ref|YP_006348784.1| - 0.024 14.1 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|389846545|ref|YP_006348784.1| - 0.09 12.3 0.1 2.4 7.7 0.0 2.7 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) ATP_bind_4 PF01902.12 gi|389846546|ref|YP_006348785.1| - 7.4e-58 195.4 0.0 2.5e-57 193.7 0.0 1.7 1 1 0 1 1 1 1 ATP-binding region AP_endonuc_2 PF01261.19 gi|389846546|ref|YP_006348785.1| - 0.033 13.4 0.1 11 5.2 0.0 2.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel QueC PF06508.8 gi|389846546|ref|YP_006348785.1| - 0.044 13.0 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DctQ PF04290.7 gi|389846548|ref|YP_006348787.1| - 0.079 12.7 0.3 0.16 11.6 0.2 1.5 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component PAPS_reduct PF01507.14 gi|389846550|ref|YP_006348789.1| - 1.2e-17 64.3 0.0 1.2e-13 51.2 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|389846550|ref|YP_006348789.1| - 0.003 16.9 0.0 0.011 15.1 0.0 1.8 2 0 0 2 2 2 1 ATP-binding region DUF2419 PF10343.4 gi|662859410|ref|YP_006348790.2| - 0.055 12.7 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) Glutaredoxin PF00462.19 gi|389846552|ref|YP_006348791.1| - 2.3e-14 53.0 0.1 5.2e-14 51.9 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.1 gi|389846552|ref|YP_006348791.1| - 0.079 13.2 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.22 gi|389846553|ref|YP_006348792.1| - 1.3e-22 79.8 0.0 2.5e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|389846553|ref|YP_006348792.1| - 0.00014 21.4 0.0 0.00027 20.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|389846553|ref|YP_006348792.1| - 0.0025 17.4 0.3 0.066 12.8 0.0 2.5 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.10 gi|389846553|ref|YP_006348792.1| - 0.0059 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase PRTase_2 PF15609.1 gi|389846553|ref|YP_006348792.1| - 0.0082 15.4 0.3 0.42 9.8 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase Sigma70_r4 PF04545.11 gi|389846553|ref|YP_006348792.1| - 0.026 13.8 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|389846553|ref|YP_006348792.1| - 0.041 13.2 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|389846553|ref|YP_006348792.1| - 0.054 13.5 0.1 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|389846553|ref|YP_006348792.1| - 0.12 12.0 0.0 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 MarR family CENP-B_N PF04218.8 gi|389846553|ref|YP_006348792.1| - 0.16 11.4 0.1 0.45 9.9 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain ADH_N PF08240.7 gi|389846554|ref|YP_006348793.1| - 3e-09 36.6 0.0 4.6e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|389846554|ref|YP_006348793.1| - 4e-05 23.1 0.0 7.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|389846554|ref|YP_006348793.1| - 0.087 12.9 0.0 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF2752 PF10825.3 gi|389846555|ref|YP_006348794.1| - 0.13 12.2 0.4 0.21 11.6 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) Lyase_1 PF00206.15 gi|389846556|ref|YP_006348795.1| - 1.1e-48 166.0 0.0 1.5e-48 165.6 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|389846556|ref|YP_006348795.1| - 2.9e-41 139.9 0.0 5.9e-41 138.9 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal AICARFT_IMPCHas PF01808.13 gi|389846557|ref|YP_006348796.1| - 1.4e-84 283.8 0.0 2e-84 283.3 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|389846557|ref|YP_006348796.1| - 1.5e-42 145.2 0.0 3e-42 144.2 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase Usp PF00582.21 gi|389846558|ref|YP_006348797.1| - 2.7e-32 111.9 2.5 3e-32 111.7 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Pterin_bind PF00809.17 gi|389846559|ref|YP_006348798.1| - 1.5e-68 230.3 0.2 2.5e-68 229.6 0.2 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|389846559|ref|YP_006348798.1| - 1.7e-14 54.3 0.0 3.4e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|389846559|ref|YP_006348798.1| - 3.3e-11 43.0 0.1 1.6e-10 40.8 0.0 2.3 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain MazG PF03819.12 gi|389846559|ref|YP_006348798.1| - 0.15 12.0 0.8 18 5.3 0.0 3.6 4 0 0 4 4 4 0 MazG nucleotide pyrophosphohydrolase domain bZIP_2 PF07716.10 gi|389846560|ref|YP_006348799.1| - 0.016 15.0 3.8 0.019 14.7 2.6 1.1 1 0 0 1 1 1 0 Basic region leucine zipper DUF1469 PF07332.6 gi|389846560|ref|YP_006348799.1| - 0.021 14.5 0.0 0.021 14.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) TMEM154 PF15102.1 gi|389846560|ref|YP_006348799.1| - 0.036 13.7 0.0 0.043 13.5 0.0 1.1 1 0 0 1 1 1 0 TMEM154 protein family DASH_Spc34 PF08657.5 gi|389846560|ref|YP_006348799.1| - 0.049 13.3 0.6 0.056 13.1 0.4 1.0 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF1192 PF06698.6 gi|389846560|ref|YP_006348799.1| - 0.072 12.9 4.8 0.088 12.6 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DivIC PF04977.10 gi|389846560|ref|YP_006348799.1| - 0.17 11.3 1.7 0.21 11.0 1.2 1.4 1 1 0 1 1 1 0 Septum formation initiator DUF1049 PF06305.6 gi|389846560|ref|YP_006348799.1| - 0.34 10.4 2.0 0.54 9.7 1.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) MRF_C1 PF13887.1 gi|389846560|ref|YP_006348799.1| - 0.58 9.2 3.0 14 4.8 0.6 2.2 2 0 0 2 2 2 0 Myelin gene regulatory factor -C-terminal domain 1 BRI3BP PF14965.1 gi|389846560|ref|YP_006348799.1| - 0.68 9.2 3.3 1.4 8.2 2.3 1.5 1 1 0 1 1 1 0 Negative regulator of p53/TP53 NRDE PF05742.7 gi|389846561|ref|YP_006348800.1| - 6.2e-25 88.0 0.0 5.2e-24 84.9 0.0 1.9 1 1 0 1 1 1 1 NRDE protein B-block_TFIIIC PF04182.7 gi|389846562|ref|YP_006348801.1| - 0.00032 20.4 0.0 0.00052 19.8 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|389846562|ref|YP_006348801.1| - 0.00045 19.8 0.0 0.00063 19.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|389846562|ref|YP_006348801.1| - 0.0038 16.8 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family Proteasome PF00227.21 gi|389846563|ref|YP_006348802.1| - 2.2e-57 193.4 0.0 2.8e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|389846563|ref|YP_006348802.1| - 4.4e-14 51.4 0.1 4.4e-14 51.4 0.1 1.7 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature BACK PF07707.10 gi|389846563|ref|YP_006348802.1| - 0.11 12.3 1.1 0.25 11.2 0.7 1.5 1 0 0 1 1 1 0 BTB And C-terminal Kelch RNase_P_Rpp14 PF01900.14 gi|389846564|ref|YP_006348803.1| - 6.1e-23 80.7 0.0 1e-22 80.0 0.0 1.3 2 0 0 2 2 2 1 Rpp14/Pop5 family Methyltransf_31 PF13847.1 gi|389846565|ref|YP_006348804.1| - 5.8e-19 68.1 0.0 8.5e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846565|ref|YP_006348804.1| - 1.4e-16 61.0 0.3 2.4e-16 60.2 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846565|ref|YP_006348804.1| - 1.4e-14 54.3 0.0 2.7e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846565|ref|YP_006348804.1| - 1.5e-13 51.0 0.0 2.8e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846565|ref|YP_006348804.1| - 5.8e-11 42.6 0.0 1.1e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846565|ref|YP_006348804.1| - 2e-09 36.8 0.1 3.7e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|389846565|ref|YP_006348804.1| - 5.5e-09 36.0 0.0 7.3e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846565|ref|YP_006348804.1| - 4.4e-08 33.0 0.0 7.3e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389846565|ref|YP_006348804.1| - 7e-08 32.0 0.0 1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|389846565|ref|YP_006348804.1| - 8.4e-06 25.1 0.1 1.2e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|389846565|ref|YP_006348804.1| - 4.5e-05 23.0 0.0 7.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|389846565|ref|YP_006348804.1| - 0.00041 19.4 0.0 0.00053 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|389846565|ref|YP_006348804.1| - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|389846565|ref|YP_006348804.1| - 0.0012 18.0 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.6 gi|389846565|ref|YP_006348804.1| - 0.0017 17.1 0.0 0.0025 16.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|389846565|ref|YP_006348804.1| - 0.002 17.0 0.0 0.003 16.4 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase GSP_synth PF03738.9 gi|389846565|ref|YP_006348804.1| - 0.0048 17.1 0.0 0.99 9.7 0.0 2.3 2 0 0 2 2 2 1 Glutathionylspermidine synthase preATP-grasp Methyltransf_4 PF02390.12 gi|389846565|ref|YP_006348804.1| - 0.0087 15.1 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|389846565|ref|YP_006348804.1| - 0.018 14.5 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N PF00107.21 gi|389846565|ref|YP_006348804.1| - 0.039 13.5 0.1 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF3650 PF12368.3 gi|389846565|ref|YP_006348804.1| - 0.1 12.1 0.4 0.44 10.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) RNase_P_p30 PF01876.11 gi|389846566|ref|YP_006348805.1| - 7.9e-33 112.8 0.0 9.7e-33 112.5 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Peptidase_M20 PF01546.23 gi|389846568|ref|YP_006348807.1| - 7.9e-28 97.2 0.4 1e-27 96.8 0.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|389846568|ref|YP_006348807.1| - 1.4e-17 63.4 0.1 3.2e-17 62.2 0.0 1.6 2 0 0 2 2 2 1 Peptidase dimerisation domain DAP_epimerase PF01678.14 gi|389846569|ref|YP_006348808.1| - 7.9e-44 148.4 1.6 9.7e-23 80.3 0.2 2.2 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|389846569|ref|YP_006348808.1| - 0.008 15.0 0.6 0.96 8.2 0.2 2.2 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.11 gi|389846570|ref|YP_006348809.1| - 1.1e-39 136.1 0.0 1.4e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|389846570|ref|YP_006348809.1| - 5.4e-19 68.0 0.0 8.8e-19 67.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|389846570|ref|YP_006348809.1| - 2.4e-06 27.2 0.1 4.1e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain THDPS_N_2 PF14805.1 gi|389846571|ref|YP_006348810.1| - 1.8e-15 56.5 0.2 2.6e-15 56.0 0.1 1.2 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|389846571|ref|YP_006348810.1| - 4.9e-11 41.6 6.6 9.9e-05 21.6 0.2 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389846571|ref|YP_006348810.1| - 5.1e-05 22.7 9.9 0.0015 18.0 0.5 3.8 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Glyco_transf_7N PF13733.1 gi|389846571|ref|YP_006348810.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 DapB_C PF05173.9 gi|389846572|ref|YP_006348811.1| - 1.3e-37 128.5 0.0 1.8e-37 128.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|389846572|ref|YP_006348811.1| - 1.5e-26 92.7 0.1 2.2e-26 92.1 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|389846572|ref|YP_006348811.1| - 2.2e-07 30.1 0.0 2.9e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|389846572|ref|YP_006348811.1| - 6e-06 26.5 0.1 1.1e-05 25.7 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|389846572|ref|YP_006348811.1| - 3.2e-05 24.3 0.1 5.5e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|389846572|ref|YP_006348811.1| - 0.00012 22.1 0.8 0.00015 21.8 0.6 1.3 1 0 0 1 1 1 1 NADH(P)-binding GFO_IDH_MocA PF01408.17 gi|389846572|ref|YP_006348811.1| - 0.0073 16.8 0.1 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold RmlD_sub_bind PF04321.12 gi|389846572|ref|YP_006348811.1| - 0.014 14.3 0.2 0.029 13.2 0.1 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain Peripla_BP_6 PF13458.1 gi|389846572|ref|YP_006348811.1| - 0.033 13.5 0.3 0.052 12.9 0.2 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Epimerase PF01370.16 gi|389846572|ref|YP_006348811.1| - 0.05 13.0 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.17 gi|389846573|ref|YP_006348812.1| - 4.9e-94 314.1 0.0 5.6e-94 313.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|389846573|ref|YP_006348812.1| - 0.00016 21.0 0.2 0.0014 17.8 0.0 2.0 1 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase NMO PF03060.10 gi|389846573|ref|YP_006348812.1| - 0.023 13.8 0.2 0.038 13.1 0.1 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase NYN PF01936.13 gi|389846575|ref|YP_006348814.1| - 1.7e-37 128.9 0.3 2e-37 128.6 0.2 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.14 gi|389846575|ref|YP_006348814.1| - 0.064 11.4 0.0 0.081 11.0 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF2529 PF10740.4 gi|389846575|ref|YP_006348814.1| - 0.1 12.0 0.0 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2529) Glycos_trans_3N PF02885.12 gi|389846575|ref|YP_006348814.1| - 0.11 12.1 0.1 5.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Claudin_2 PF13903.1 gi|389846576|ref|YP_006348815.1| - 0.0013 18.4 9.5 0.0013 18.4 6.6 2.1 2 1 0 2 2 2 1 PMP-22/EMP/MP20/Claudin tight junction DUF975 PF06161.6 gi|389846576|ref|YP_006348815.1| - 7.5 6.2 14.9 0.21 11.2 5.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF975) TGT_C2 PF14810.1 gi|389846577|ref|YP_006348816.1| - 2e-24 85.2 0.1 3.2e-24 84.5 0.1 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|389846577|ref|YP_006348816.1| - 7.2e-18 64.0 0.1 1e-17 63.5 0.1 1.3 1 0 0 1 1 1 1 PUA domain TruB-C_2 PF09157.6 gi|389846577|ref|YP_006348816.1| - 0.051 13.4 0.4 3.2 7.6 0.0 3.0 2 1 1 3 3 3 0 Pseudouridine synthase II TruB, C-terminal DUF1119 PF06550.6 gi|389846578|ref|YP_006348817.1| - 1.5e-81 273.6 16.3 2.4e-81 272.9 11.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|389846578|ref|YP_006348817.1| - 8.5e-06 25.4 4.7 0.00084 18.8 0.5 2.5 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.12 gi|389846578|ref|YP_006348817.1| - 0.0003 19.7 0.1 0.011 14.5 0.1 2.3 2 0 0 2 2 2 2 Presenilin Gar1 PF04410.9 gi|389846579|ref|YP_006348818.1| - 7.4e-07 28.7 0.0 7.9e-07 28.6 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|389846580|ref|YP_006348819.1| - 9.1e-27 93.4 0.2 9.9e-27 93.3 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein GIDE PF12483.3 gi|389846581|ref|YP_006348820.1| - 0.00048 19.5 0.0 0.0011 18.3 0.0 1.6 1 1 0 1 1 1 1 E3 Ubiquitin ligase Peripla_BP_2 PF01497.13 gi|389846582|ref|YP_006348821.1| - 1.6e-32 112.5 0.2 2.4e-32 111.9 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Trypan_PARP PF05887.6 gi|389846582|ref|YP_006348821.1| - 0.011 15.4 6.8 0.025 14.4 3.6 2.2 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) SAP25 PF15476.1 gi|389846582|ref|YP_006348821.1| - 0.013 14.9 0.7 0.058 12.8 0.1 2.1 2 0 0 2 2 2 0 Histone deacetylase complex subunit SAP25 HSP9_HSP12 PF04119.7 gi|389846582|ref|YP_006348821.1| - 0.073 13.1 1.2 0.17 12.0 0.8 1.6 1 0 0 1 1 1 0 Heat shock protein 9/12 FecCD PF01032.13 gi|389846583|ref|YP_006348822.1| - 2.3e-90 302.6 33.8 5.4e-90 301.3 23.4 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|389846583|ref|YP_006348822.1| - 0.00033 20.0 21.0 0.00033 20.0 14.6 2.2 2 1 1 3 3 3 1 ABC 3 transport family DUF2781 PF10914.3 gi|389846583|ref|YP_006348822.1| - 0.18 11.5 2.7 4 7.1 0.2 3.2 2 2 0 3 3 3 0 Protein of unknown function (DUF2781) ABC_tran PF00005.22 gi|389846584|ref|YP_006348823.1| - 1e-30 106.7 0.0 1.7e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389846584|ref|YP_006348823.1| - 1.4e-08 35.0 0.1 0.0002 21.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389846584|ref|YP_006348823.1| - 0.00027 20.2 0.0 0.0015 17.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|389846584|ref|YP_006348823.1| - 0.0003 20.8 0.4 0.0012 18.8 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|389846584|ref|YP_006348823.1| - 0.00049 20.4 0.0 0.00074 19.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|389846584|ref|YP_006348823.1| - 0.00086 18.1 1.7 0.0012 17.7 0.1 1.8 2 0 0 2 2 2 1 ArgK protein Zeta_toxin PF06414.7 gi|389846584|ref|YP_006348823.1| - 0.00096 18.2 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|389846584|ref|YP_006348823.1| - 0.0028 17.1 0.2 0.0063 16.0 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389846584|ref|YP_006348823.1| - 0.0037 16.4 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|389846584|ref|YP_006348823.1| - 0.0076 15.8 0.8 0.0076 15.8 0.6 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389846584|ref|YP_006348823.1| - 0.015 15.4 0.7 0.11 12.6 0.5 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389846584|ref|YP_006348823.1| - 0.023 14.3 0.4 0.43 10.2 0.1 2.2 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|389846584|ref|YP_006348823.1| - 0.032 13.8 0.1 0.058 13.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|389846584|ref|YP_006348823.1| - 0.037 13.9 0.9 0.097 12.5 0.6 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|389846584|ref|YP_006348823.1| - 0.037 13.1 0.0 0.075 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|389846584|ref|YP_006348823.1| - 0.05 13.3 0.4 0.58 9.8 0.1 2.5 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|389846584|ref|YP_006348823.1| - 0.054 13.2 0.3 0.21 11.2 0.2 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|389846584|ref|YP_006348823.1| - 0.056 13.3 1.0 0.19 11.6 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|389846584|ref|YP_006348823.1| - 0.064 13.1 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|389846584|ref|YP_006348823.1| - 0.064 13.4 0.1 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|389846584|ref|YP_006348823.1| - 0.08 11.9 0.0 3 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|389846584|ref|YP_006348823.1| - 0.13 11.7 1.0 0.21 11.0 0.1 1.8 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|389846584|ref|YP_006348823.1| - 0.2 10.5 0.1 0.41 9.4 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.4 gi|389846584|ref|YP_006348823.1| - 0.28 9.7 3.4 2 6.9 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Tubulin PF00091.20 gi|389846585|ref|YP_006348824.1| - 6.2e-22 78.4 0.0 1e-21 77.7 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain UPF0278 PF08745.6 gi|389846586|ref|YP_006348825.1| - 2e-75 252.5 0.3 2.3e-75 252.3 0.2 1.0 1 0 0 1 1 1 1 UPF0278 family DUF1470 PF07336.6 gi|389846587|ref|YP_006348826.1| - 0.096 13.0 0.1 0.098 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) HTH_20 PF12840.2 gi|389846588|ref|YP_006348827.1| - 4.8e-11 42.2 0.5 6.3e-11 41.9 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389846588|ref|YP_006348827.1| - 2.8e-06 26.8 0.6 6.1e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389846588|ref|YP_006348827.1| - 0.00017 21.2 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389846588|ref|YP_006348827.1| - 0.00062 19.3 0.1 0.00098 18.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389846588|ref|YP_006348827.1| - 0.0011 18.2 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|389846588|ref|YP_006348827.1| - 0.013 15.3 0.0 0.018 14.9 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family ArsR PF09824.4 gi|389846588|ref|YP_006348827.1| - 0.021 14.1 0.0 0.026 13.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_5 PF01022.15 gi|389846588|ref|YP_006348827.1| - 0.033 13.8 0.1 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|389846588|ref|YP_006348827.1| - 0.096 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain PTR PF12789.2 gi|389846588|ref|YP_006348827.1| - 0.13 12.1 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Phage tail repeat like HTH_10 PF04967.7 gi|662859411|ref|YP_006348829.2| - 1.5e-21 75.6 0.0 2.3e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|662859411|ref|YP_006348829.2| - 0.013 14.8 0.0 0.033 13.5 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|662859411|ref|YP_006348829.2| - 0.013 14.8 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|662859411|ref|YP_006348829.2| - 0.083 12.4 0.3 0.53 9.8 0.2 2.1 1 1 0 1 1 1 0 LexA DNA binding domain Copper-bind PF00127.15 gi|389846591|ref|YP_006348830.1| - 7.4e-15 54.9 0.2 2e-14 53.6 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389846591|ref|YP_006348830.1| - 0.001 18.8 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|389846591|ref|YP_006348830.1| - 0.0017 18.1 2.0 0.0017 18.1 1.4 2.0 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence PaaB PF06243.6 gi|389846592|ref|YP_006348831.1| - 1.3e-11 44.5 0.0 1.5e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|389846593|ref|YP_006348832.1| - 3.7e-23 82.5 0.0 4.7e-22 78.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|389846593|ref|YP_006348832.1| - 1.5e-12 47.8 0.0 5e-12 46.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|389846593|ref|YP_006348832.1| - 1.3e-10 41.3 0.0 8e-10 38.7 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Pyr_redox_2 PF07992.9 gi|389846595|ref|YP_006348834.1| - 1.8e-23 83.4 2.2 9.1e-23 81.1 1.5 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846595|ref|YP_006348834.1| - 7e-18 64.8 0.3 1.3e-15 57.5 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389846595|ref|YP_006348834.1| - 1.5e-12 48.0 0.0 2.7e-11 43.9 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389846595|ref|YP_006348834.1| - 3.3e-06 26.2 0.1 0.028 13.3 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|389846595|ref|YP_006348834.1| - 0.0002 21.3 0.0 0.00067 19.6 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|389846595|ref|YP_006348834.1| - 0.0009 18.1 3.4 0.089 11.6 0.0 3.0 2 1 2 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|389846595|ref|YP_006348834.1| - 0.0018 16.8 0.1 4.3 5.7 0.0 3.8 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|389846595|ref|YP_006348834.1| - 0.0021 18.2 0.0 0.0072 16.5 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|389846595|ref|YP_006348834.1| - 0.0049 15.7 0.1 8.4 5.1 0.0 3.7 4 0 0 4 4 4 1 Glucose inhibited division protein A FMO-like PF00743.14 gi|389846595|ref|YP_006348834.1| - 0.014 13.6 0.0 2.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like K_oxygenase PF13434.1 gi|389846595|ref|YP_006348834.1| - 0.091 11.6 0.0 0.25 10.2 0.0 1.8 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|389846595|ref|YP_006348834.1| - 0.093 11.8 0.0 0.52 9.3 0.0 2.0 2 0 0 2 2 2 0 Thi4 family Shikimate_DH PF01488.15 gi|389846595|ref|YP_006348834.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF357 PF04010.8 gi|389846596|ref|YP_006348835.1| - 2.4e-28 97.6 0.4 2.7e-28 97.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) PAS_9 PF13426.1 gi|389846597|ref|YP_006348836.1| - 1.1e-21 77.1 0.0 4.6e-11 43.0 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|389846597|ref|YP_006348836.1| - 1.3e-20 73.4 0.3 7.5e-10 38.8 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|389846597|ref|YP_006348836.1| - 1.8e-19 69.6 0.0 1.7e-08 34.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|389846597|ref|YP_006348836.1| - 3.5e-19 68.5 0.1 6.8e-19 67.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|389846597|ref|YP_006348836.1| - 2e-12 46.4 0.0 5.3e-05 22.9 0.0 3.3 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|389846597|ref|YP_006348836.1| - 7.1e-12 45.1 1.7 7.1e-12 45.1 1.2 2.5 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|389846597|ref|YP_006348836.1| - 2.1e-07 30.9 0.1 0.00049 20.0 0.1 4.0 3 1 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|389846597|ref|YP_006348836.1| - 0.0003 20.8 0.0 0.0097 15.9 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.1 gi|389846597|ref|YP_006348836.1| - 0.00035 20.8 0.0 0.0027 17.9 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|389846597|ref|YP_006348836.1| - 0.01 15.6 0.1 0.022 14.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|389846597|ref|YP_006348836.1| - 0.032 13.8 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tRNA-synt_1e PF01406.14 gi|389846598|ref|YP_006348837.1| - 5.8e-106 353.9 0.1 3.6e-105 351.3 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|389846598|ref|YP_006348837.1| - 3.3e-13 49.6 0.4 9.8e-13 48.1 0.3 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.6 gi|389846598|ref|YP_006348837.1| - 1.1e-09 37.4 0.1 0.00018 20.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|389846598|ref|YP_006348837.1| - 3.4e-07 29.2 0.0 0.00036 19.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|389846598|ref|YP_006348837.1| - 2.1e-05 22.7 0.0 0.00015 19.9 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) UVR PF02151.14 gi|389846598|ref|YP_006348837.1| - 0.0065 15.9 0.0 0.035 13.6 0.0 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif tRNA-synt_1d PF00750.14 gi|389846598|ref|YP_006348837.1| - 0.016 14.0 0.7 0.55 8.9 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|389846598|ref|YP_006348837.1| - 0.084 11.5 0.0 0.17 10.5 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain Talin_middle PF09141.5 gi|662859412|ref|YP_006348838.2| - 0.068 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Talin, middle domain CbiX PF01903.12 gi|389846600|ref|YP_006348839.1| - 2e-42 143.5 0.2 5.2e-21 74.7 0.0 2.3 2 1 0 2 2 2 2 CbiX CbiK PF06180.6 gi|389846600|ref|YP_006348839.1| - 7.3e-08 31.8 0.0 0.0074 15.4 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Trm112p PF03966.11 gi|389846603|ref|YP_006348842.1| - 0.00013 22.3 0.1 0.00032 21.0 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.16 gi|389846604|ref|YP_006348843.1| - 8.5e-151 502.3 0.0 9.7e-151 502.1 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.5 gi|389846605|ref|YP_006348844.1| - 0.0014 18.3 0.1 0.0031 17.1 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|389846605|ref|YP_006348844.1| - 0.0067 15.7 0.1 0.016 14.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389846605|ref|YP_006348844.1| - 0.014 15.1 0.3 0.032 13.9 0.1 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|389846605|ref|YP_006348844.1| - 0.016 14.7 0.1 0.029 13.9 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) MotA_activ PF09114.5 gi|389846605|ref|YP_006348844.1| - 0.018 14.7 0.0 0.021 14.5 0.0 1.3 1 1 0 1 1 1 0 Transcription factor MotA, activation domain Matrilin_ccoil PF10393.4 gi|389846605|ref|YP_006348844.1| - 0.05 12.9 0.2 0.12 11.7 0.1 1.6 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Pup PF05639.6 gi|389846605|ref|YP_006348844.1| - 0.058 13.8 0.3 0.09 13.2 0.2 1.4 1 0 0 1 1 1 0 Pup-like protein HTH_15 PF12324.3 gi|389846605|ref|YP_006348844.1| - 0.059 13.0 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_5 PF01022.15 gi|389846605|ref|YP_006348844.1| - 0.064 12.9 0.2 0.17 11.5 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389846605|ref|YP_006348844.1| - 0.094 12.5 0.6 0.32 10.8 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|389846605|ref|YP_006348844.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein S19e Uds1 PF15456.1 gi|389846605|ref|YP_006348844.1| - 0.22 11.4 1.4 0.94 9.4 1.0 1.8 1 1 0 1 1 1 0 Up-regulated During Septation EMP24_GP25L PF01105.19 gi|389846605|ref|YP_006348844.1| - 1.2 8.8 4.1 0.42 10.3 0.3 1.8 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD CENP-F_leu_zip PF10473.4 gi|662859413|ref|YP_006348846.2| - 0.0036 17.1 6.5 0.0062 16.3 4.5 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 bZIP_1 PF00170.16 gi|662859413|ref|YP_006348846.2| - 0.005 16.7 9.5 0.017 15.0 1.3 2.4 1 1 1 2 2 2 1 bZIP transcription factor Filament PF00038.16 gi|662859413|ref|YP_006348846.2| - 0.0072 15.8 8.5 0.011 15.2 5.9 1.2 1 0 0 1 1 1 1 Intermediate filament protein Cep57_CLD_2 PF14197.1 gi|662859413|ref|YP_006348846.2| - 0.012 15.4 13.2 0.025 14.4 9.1 1.5 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF1192 PF06698.6 gi|662859413|ref|YP_006348846.2| - 0.013 15.3 3.3 0.013 15.3 2.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF848 PF05852.6 gi|662859413|ref|YP_006348846.2| - 0.014 15.2 3.5 0.028 14.2 2.4 1.4 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) bZIP_2 PF07716.10 gi|662859413|ref|YP_006348846.2| - 0.016 15.0 10.8 0.075 12.8 6.6 2.3 1 1 1 2 2 2 0 Basic region leucine zipper Macoilin PF09726.4 gi|662859413|ref|YP_006348846.2| - 0.029 12.6 18.6 0.054 11.7 12.9 1.3 1 0 0 1 1 1 0 Transmembrane protein IncA PF04156.9 gi|662859413|ref|YP_006348846.2| - 0.036 13.6 10.8 0.064 12.8 7.5 1.3 1 0 0 1 1 1 0 IncA protein THOC7 PF05615.8 gi|662859413|ref|YP_006348846.2| - 0.047 13.9 5.5 0.084 13.1 3.8 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 HOOK PF05622.7 gi|662859413|ref|YP_006348846.2| - 0.12 10.1 8.4 0.18 9.5 5.6 1.4 1 1 0 1 1 1 0 HOOK protein TBPIP PF07106.8 gi|662859413|ref|YP_006348846.2| - 0.2 11.1 2.3 0.35 10.3 1.6 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|662859413|ref|YP_006348846.2| - 0.4 9.3 7.5 0.61 8.6 5.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein APG6 PF04111.7 gi|662859413|ref|YP_006348846.2| - 0.52 9.2 8.8 0.82 8.6 6.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|662859413|ref|YP_006348846.2| - 0.55 10.0 10.8 0.084 12.6 4.5 1.9 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding HALZ PF02183.13 gi|662859413|ref|YP_006348846.2| - 0.63 9.8 9.4 4.9 6.9 2.1 2.3 1 1 1 2 2 2 0 Homeobox associated leucine zipper EMP24_GP25L PF01105.19 gi|662859413|ref|YP_006348846.2| - 1.2 8.8 2.6 2.3 7.9 1.8 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF4071 PF13281.1 gi|662859413|ref|YP_006348846.2| - 2.1 7.0 4.8 3.3 6.4 3.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Tropomyosin_1 PF12718.2 gi|662859413|ref|YP_006348846.2| - 2.9 7.7 22.5 0.065 13.0 11.0 1.7 2 0 0 2 2 1 0 Tropomyosin like DUF972 PF06156.8 gi|662859413|ref|YP_006348846.2| - 3.5 8.0 5.5 7.4 6.9 2.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|662859413|ref|YP_006348846.2| - 4.2 5.1 5.9 5.6 4.6 4.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family GAS PF13851.1 gi|662859413|ref|YP_006348846.2| - 4.5 6.3 8.7 1.9 7.6 4.1 1.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|662859413|ref|YP_006348846.2| - 4.9 6.7 8.5 14 5.2 4.2 2.3 1 1 1 2 2 2 0 Septum formation initiator Mnd1 PF03962.10 gi|662859413|ref|YP_006348846.2| - 5.3 6.6 11.3 13 5.3 7.9 1.7 1 1 0 1 1 1 0 Mnd1 family OmpH PF03938.9 gi|662859413|ref|YP_006348846.2| - 5.7 6.8 10.8 4.9 7.0 6.4 1.6 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) DUF605 PF04652.11 gi|662859413|ref|YP_006348846.2| - 6.9 5.9 34.3 13 5.0 23.8 1.5 1 0 0 1 1 1 0 Vta1 like Methyltransf_18 PF12847.2 gi|389846608|ref|YP_006348847.1| - 3.9e-07 30.6 0.0 1.1e-06 29.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846608|ref|YP_006348847.1| - 0.0005 20.4 0.0 0.0012 19.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_28 PF02636.12 gi|389846608|ref|YP_006348847.1| - 0.00086 18.7 0.0 0.0013 18.1 0.0 1.4 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_31 PF13847.1 gi|389846608|ref|YP_006348847.1| - 0.002 17.7 0.0 0.015 14.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846608|ref|YP_006348847.1| - 0.0094 16.2 0.0 0.02 15.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846608|ref|YP_006348847.1| - 0.019 14.7 0.0 0.036 13.7 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846608|ref|YP_006348847.1| - 0.024 15.1 0.0 0.071 13.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain CDP-OH_P_transf PF01066.16 gi|389846609|ref|YP_006348848.1| - 5e-11 42.8 4.9 5e-11 42.8 3.4 2.0 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF204 PF02659.10 gi|389846610|ref|YP_006348849.1| - 1.2 9.2 12.7 0.23 11.6 2.7 2.5 1 1 2 3 3 3 0 Domain of unknown function DUF EI24 PF07264.6 gi|389846612|ref|YP_006348851.1| - 0.028 13.8 0.6 0.031 13.6 0.4 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF4152 PF13680.1 gi|389846612|ref|YP_006348851.1| - 0.048 12.6 0.1 0.056 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4152) AzlD PF05437.7 gi|389846612|ref|YP_006348851.1| - 0.12 12.3 5.9 0.13 12.1 4.1 1.2 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) TrkA_N PF02254.13 gi|389846613|ref|YP_006348852.1| - 4.9e-38 129.6 7.1 1.5e-18 66.8 0.0 2.9 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|389846613|ref|YP_006348852.1| - 9.9e-24 82.7 1.0 4e-11 42.3 0.1 2.8 2 0 0 2 2 2 2 TrkA-C domain FAD_binding_3 PF01494.14 gi|389846613|ref|YP_006348852.1| - 6.7e-05 22.0 0.4 0.00011 21.3 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Ion_trans_2 PF07885.11 gi|389846613|ref|YP_006348852.1| - 0.00024 20.7 3.9 0.00051 19.7 2.7 1.5 1 0 0 1 1 1 1 Ion channel ThiF PF00899.16 gi|389846613|ref|YP_006348852.1| - 0.00056 19.7 0.0 0.0016 18.2 0.0 1.8 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.1 gi|389846613|ref|YP_006348852.1| - 0.0028 17.8 1.5 0.1 12.8 0.3 2.8 2 1 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|389846613|ref|YP_006348852.1| - 0.0071 15.9 0.1 0.021 14.3 0.0 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|389846613|ref|YP_006348852.1| - 0.023 13.8 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|389846613|ref|YP_006348852.1| - 0.026 14.1 0.9 0.053 13.1 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|389846613|ref|YP_006348852.1| - 0.036 13.9 0.0 0.09 12.6 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_2 PF07992.9 gi|389846613|ref|YP_006348852.1| - 0.052 13.4 0.2 0.096 12.5 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.20 gi|389846613|ref|YP_006348852.1| - 2.4 8.0 9.0 1.2 9.0 0.5 3.1 2 1 1 3 3 3 0 short chain dehydrogenase COX3 PF00510.13 gi|389846614|ref|YP_006348853.1| - 1.6e-41 142.4 17.6 2.4e-41 141.8 12.2 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III SQS_PSY PF00494.14 gi|389846615|ref|YP_006348854.1| - 3e-48 164.4 0.3 4.4e-48 163.8 0.2 1.3 1 0 0 1 1 1 1 Squalene/phytoene synthase Acyl-CoA_dh_1 PF00441.19 gi|389846616|ref|YP_006348855.1| - 7.6e-49 165.6 0.3 2e-48 164.2 0.5 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389846616|ref|YP_006348855.1| - 7.9e-35 119.8 0.3 1.9e-34 118.6 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389846616|ref|YP_006348855.1| - 2.2e-22 78.3 0.2 1.6e-21 75.5 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|389846616|ref|YP_006348855.1| - 3.4e-22 79.1 0.9 5e-22 78.6 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PadR PF03551.9 gi|389846617|ref|YP_006348856.1| - 0.0003 20.4 0.2 0.00061 19.5 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389846617|ref|YP_006348856.1| - 0.0059 16.9 0.1 0.0095 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389846617|ref|YP_006348856.1| - 0.014 15.1 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|389846617|ref|YP_006348856.1| - 0.047 13.5 0.0 0.08 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix SelB-wing_2 PF09106.6 gi|389846617|ref|YP_006348856.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_34 PF13601.1 gi|389846617|ref|YP_006348856.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain CDP-OH_P_transf PF01066.16 gi|389846619|ref|YP_006348858.1| - 2.9e-07 30.7 17.1 2.9e-06 27.5 11.9 2.5 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF2474 PF10617.4 gi|389846619|ref|YP_006348858.1| - 7.5 6.2 10.9 2.1 8.0 3.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) Copper-bind PF00127.15 gi|389846620|ref|YP_006348859.1| - 1.3e-15 57.4 0.0 2.6e-15 56.4 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389846620|ref|YP_006348859.1| - 0.00014 21.6 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain UCR_Fe-S_N PF10399.4 gi|389846620|ref|YP_006348859.1| - 0.064 12.4 0.4 0.13 11.4 0.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ribosomal_S3Ae PF01015.13 gi|389846621|ref|YP_006348860.1| - 2.1e-63 213.2 0.2 2.5e-63 212.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribul_P_3_epim PF00834.14 gi|389846622|ref|YP_006348861.1| - 0.027 13.5 0.3 0.027 13.5 0.2 1.1 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF1381 PF07129.6 gi|389846622|ref|YP_006348861.1| - 2.3 7.6 4.4 0.57 9.6 0.5 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1381) HTH_Tnp_1 PF01527.15 gi|389846623|ref|YP_006348862.1| - 0.03 14.2 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 Transposase Ribosomal_S15 PF00312.17 gi|662859414|ref|YP_006348863.2| - 2e-23 81.9 1.0 3.5e-23 81.1 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|662859414|ref|YP_006348863.2| - 7.9e-23 80.0 0.0 1.3e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain CRISPR_Cse1 PF09481.5 gi|662859414|ref|YP_006348863.2| - 0.038 12.7 0.0 0.05 12.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) DUF1628 PF07790.6 gi|389846628|ref|YP_006348867.1| - 0.024 15.3 0.7 0.041 14.6 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) FlgD_ig PF13860.1 gi|389846629|ref|YP_006348868.1| - 0.016 14.9 0.1 0.049 13.3 0.1 1.9 1 1 0 1 1 1 0 FlgD Ig-like domain T2SF PF00482.18 gi|389846632|ref|YP_006348871.1| - 8.7e-25 87.0 10.4 2.3e-12 46.9 0.8 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF912 PF06024.7 gi|389846632|ref|YP_006348871.1| - 0.31 11.0 1.4 4.3 7.4 0.2 2.7 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) T2SE PF00437.15 gi|389846633|ref|YP_006348872.1| - 4.2e-43 147.2 0.0 6.5e-43 146.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|389846633|ref|YP_006348872.1| - 9.7e-05 21.8 0.1 0.00023 20.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Pyridox_oxidase PF01243.15 gi|389846634|ref|YP_006348873.1| - 1.5e-14 53.7 0.0 1.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase MttA_Hcf106 PF02416.11 gi|389846635|ref|YP_006348874.1| - 9.7e-15 53.4 0.0 1.2e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.16 gi|389846636|ref|YP_006348875.1| - 3.2e-32 110.8 0.0 3.7e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389846636|ref|YP_006348875.1| - 5.4e-23 81.1 0.0 6.6e-23 80.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|389846636|ref|YP_006348875.1| - 0.0044 16.9 0.0 0.12 12.2 0.0 2.1 1 1 0 2 2 2 1 AhpC/TSA antioxidant enzyme HD PF01966.17 gi|389846637|ref|YP_006348876.1| - 2.3e-09 37.3 3.9 4.3e-09 36.4 2.7 1.5 1 0 0 1 1 1 1 HD domain MS_channel PF00924.13 gi|389846638|ref|YP_006348877.1| - 3.7e-51 173.3 0.1 3.7e-51 173.3 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel Glycoprotein_B PF00606.13 gi|389846638|ref|YP_006348877.1| - 0.094 10.7 0.4 0.13 10.2 0.3 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B TM_helix PF05552.7 gi|389846638|ref|YP_006348877.1| - 0.2 11.3 7.8 0.26 11.0 0.1 2.8 2 1 0 2 2 2 0 Conserved TM helix SPC12 PF06645.8 gi|389846638|ref|YP_006348877.1| - 9.4 6.1 11.6 7.2 6.5 0.5 3.1 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) CRS1_YhbY PF01985.16 gi|389846639|ref|YP_006348878.1| - 2.7e-18 65.7 0.2 2.9e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain HrcA PF01628.16 gi|389846639|ref|YP_006348878.1| - 0.047 13.2 0.1 0.27 10.7 0.0 1.8 1 1 0 1 1 1 0 HrcA protein C terminal domain Alkyl_sulf_C PF14864.1 gi|389846639|ref|YP_006348878.1| - 0.13 12.2 0.0 0.94 9.4 0.0 1.9 1 1 1 2 2 2 0 Alkyl sulfatase C-terminal Rpr2 PF04032.11 gi|662859416|ref|YP_006348879.2| - 2.6e-17 62.4 0.1 3e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-CDGSH PF09360.5 gi|662859416|ref|YP_006348879.2| - 0.12 12.2 0.4 0.12 12.2 0.3 1.6 1 1 0 1 1 1 0 Iron-binding zinc finger CDGSH type zf-DNL PF05180.7 gi|662859416|ref|YP_006348879.2| - 0.19 11.4 0.8 0.37 10.5 0.5 1.4 1 0 0 1 1 1 0 DNL zinc finger KGG PF10685.4 gi|662859416|ref|YP_006348879.2| - 0.82 9.6 4.9 7.3 6.6 1.0 2.5 1 1 1 2 2 2 0 Stress-induced bacterial acidophilic repeat motif Glycos_transf_1 PF00534.15 gi|389846641|ref|YP_006348880.1| - 4.4e-19 68.5 0.0 3.3e-17 62.4 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|389846641|ref|YP_006348880.1| - 8.5e-14 51.8 0.0 4.4e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|389846641|ref|YP_006348880.1| - 6.7e-12 45.5 0.1 1.3e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389846641|ref|YP_006348880.1| - 1.6e-09 38.0 0.3 6.8e-09 36.0 0.2 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|389846641|ref|YP_006348880.1| - 4.6e-08 32.9 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|389846642|ref|YP_006348881.1| - 1.1e-32 112.8 0.0 2.3e-32 111.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389846642|ref|YP_006348881.1| - 9e-21 74.6 7.6 2.4e-19 70.0 1.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|389846642|ref|YP_006348881.1| - 4.5e-17 62.4 0.2 7.3e-16 58.5 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|389846642|ref|YP_006348881.1| - 9.9e-17 61.2 0.0 2e-16 60.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|389846642|ref|YP_006348881.1| - 1.6e-06 28.2 0.0 4.9e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|389846642|ref|YP_006348881.1| - 0.0014 18.4 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like NEMO PF11577.3 gi|389846643|ref|YP_006348882.1| - 0.56 9.9 10.4 2 8.2 4.4 2.1 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO DUF4140 PF13600.1 gi|389846643|ref|YP_006348882.1| - 5.9 7.3 6.9 0.77 10.2 0.3 2.0 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2797 PF10977.3 gi|389846644|ref|YP_006348883.1| - 8.6e-53 179.3 0.5 7.1e-52 176.3 0.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PQQ_3 PF13570.1 gi|389846644|ref|YP_006348883.1| - 0.79 10.0 3.4 0.85 9.9 0.3 2.5 2 0 0 2 2 2 0 PQQ-like domain Epimerase PF01370.16 gi|389846645|ref|YP_006348884.1| - 1e-48 165.8 0.0 1.2e-48 165.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|389846645|ref|YP_006348884.1| - 8.7e-22 77.3 0.0 1.1e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|389846645|ref|YP_006348884.1| - 1.1e-13 50.5 0.0 1.7e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|389846645|ref|YP_006348884.1| - 1.1e-12 47.4 0.0 1.1e-10 40.8 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|389846645|ref|YP_006348884.1| - 6.4e-12 45.8 0.0 8.4e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|389846645|ref|YP_006348884.1| - 7.6e-12 44.7 0.1 8.9e-11 41.2 0.1 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|389846645|ref|YP_006348884.1| - 2e-06 27.8 0.0 4.2e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|389846645|ref|YP_006348884.1| - 5.4e-06 26.3 0.1 9.4e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.8 gi|389846645|ref|YP_006348884.1| - 7.2e-05 22.1 0.1 0.00048 19.4 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family Ldh_1_N PF00056.18 gi|389846645|ref|YP_006348884.1| - 0.0012 18.6 0.1 0.0028 17.4 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|389846645|ref|YP_006348884.1| - 0.0044 16.0 0.1 0.042 12.8 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase KR PF08659.5 gi|389846645|ref|YP_006348884.1| - 0.014 15.0 0.9 0.073 12.7 0.6 2.2 1 1 0 1 1 1 0 KR domain DUF1188 PF06690.6 gi|389846645|ref|YP_006348884.1| - 0.041 13.0 0.1 0.097 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Hpr_kinase_C PF07475.7 gi|389846645|ref|YP_006348884.1| - 0.042 13.1 0.1 0.091 12.0 0.1 1.6 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Semialdhyde_dh PF01118.19 gi|389846645|ref|YP_006348884.1| - 0.089 13.0 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|662859417|ref|YP_006348885.2| - 6.5e-19 68.4 2.7 1.1e-18 67.6 1.8 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|662859417|ref|YP_006348885.2| - 7.9e-07 28.9 0.3 1.3e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|662859417|ref|YP_006348885.2| - 9.8e-05 21.8 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF3313 PF11769.3 gi|662859417|ref|YP_006348885.2| - 0.074 12.4 0.2 0.46 9.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3313) Trm56 PF01994.11 gi|389846647|ref|YP_006348886.1| - 3.7e-47 159.0 0.0 5e-47 158.5 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|662859418|ref|YP_006348887.2| - 6.6e-21 73.7 0.5 1.1e-20 73.0 0.1 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|662859418|ref|YP_006348887.2| - 0.011 15.6 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 DUF3618 PF12277.3 gi|662859418|ref|YP_006348887.2| - 0.056 13.4 3.1 2.1 8.4 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) HTH_20 PF12840.2 gi|662859418|ref|YP_006348887.2| - 0.12 12.2 0.6 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2110 PF09883.4 gi|389846649|ref|YP_006348888.1| - 1.8e-91 305.7 0.0 2.1e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) MoCF_biosynth PF00994.19 gi|389846651|ref|YP_006348890.1| - 1.2e-36 125.2 0.6 1.2e-36 125.2 0.4 1.4 2 0 0 2 2 2 1 Probable molybdopterin binding domain DUF4350 PF14258.1 gi|389846651|ref|YP_006348890.1| - 0.02 15.1 0.1 0.069 13.3 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4350) NAD_kinase PF01513.16 gi|389846653|ref|YP_006348892.1| - 1.3e-49 168.5 0.1 1.5e-49 168.3 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|389846653|ref|YP_006348892.1| - 0.00019 20.8 1.0 0.00019 20.8 0.7 2.5 2 1 1 3 3 3 1 Diacylglycerol kinase catalytic domain Peripla_BP_6 PF13458.1 gi|389846653|ref|YP_006348892.1| - 0.0013 18.1 0.4 0.0038 16.6 0.1 1.8 2 0 0 2 2 2 1 Periplasmic binding protein DRTGG PF07085.7 gi|389846653|ref|YP_006348892.1| - 0.032 13.8 0.1 0.46 10.1 0.0 2.5 3 0 0 3 3 3 0 DRTGG domain PhoU PF01895.14 gi|389846654|ref|YP_006348893.1| - 9.2e-13 48.4 4.3 4.7e-10 39.7 0.0 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|389846654|ref|YP_006348893.1| - 6.2e-09 35.3 0.0 1.2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE LEA_2 PF03168.8 gi|389846656|ref|YP_006348895.1| - 3.4e-19 69.0 0.1 9.1e-09 35.6 0.0 2.6 2 0 0 2 2 2 2 Late embryogenesis abundant protein Macoilin PF09726.4 gi|389846656|ref|YP_006348895.1| - 1.7 6.8 6.7 2 6.6 4.7 1.1 1 0 0 1 1 1 0 Transmembrane protein Rifin_STEVOR PF02009.11 gi|389846656|ref|YP_006348895.1| - 6.3 6.3 9.0 10 5.6 6.2 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF2416 PF10315.4 gi|389846657|ref|YP_006348896.1| - 0.041 14.1 0.2 0.041 14.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2416) FaeA PF04703.7 gi|389846658|ref|YP_006348897.1| - 0.00016 21.7 0.1 0.00019 21.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.11 gi|389846658|ref|YP_006348897.1| - 0.0061 16.0 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain Myb_DNA-bind_6 PF13921.1 gi|389846658|ref|YP_006348897.1| - 0.0064 16.5 0.0 0.0082 16.2 0.0 1.2 1 0 0 1 1 1 1 Myb-like DNA-binding domain HTH_24 PF13412.1 gi|389846658|ref|YP_006348897.1| - 0.056 12.8 0.7 0.21 11.0 0.1 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Polyketide_cyc2 PF10604.4 gi|389846659|ref|YP_006348898.1| - 5.1e-15 55.8 2.2 6e-15 55.6 1.5 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|389846659|ref|YP_006348898.1| - 0.0013 18.3 0.0 0.0021 17.7 0.0 1.3 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|389846659|ref|YP_006348898.1| - 0.0039 17.1 0.1 0.0051 16.8 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|389846659|ref|YP_006348898.1| - 0.076 12.5 0.1 0.45 9.9 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) Aldedh PF00171.17 gi|389846660|ref|YP_006348899.1| - 6.4e-144 479.7 0.0 7.4e-144 479.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|389846660|ref|YP_006348899.1| - 0.0048 15.6 0.0 0.0087 14.8 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) HTH_10 PF04967.7 gi|662859420|ref|YP_006348900.2| - 1.7e-19 69.0 0.2 2.6e-19 68.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|662859420|ref|YP_006348900.2| - 0.00045 19.6 1.3 0.0042 16.5 0.9 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|662859420|ref|YP_006348900.2| - 0.00071 18.9 0.2 0.0014 18.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.18 gi|662859420|ref|YP_006348900.2| - 0.0029 17.2 0.1 0.0076 15.8 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|662859420|ref|YP_006348900.2| - 0.0041 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|662859420|ref|YP_006348900.2| - 0.0046 16.5 0.1 0.012 15.2 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|662859420|ref|YP_006348900.2| - 0.009 15.6 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TPM PF04536.9 gi|662859420|ref|YP_006348900.2| - 0.028 14.2 0.1 0.048 13.5 0.1 1.4 1 0 0 1 1 1 0 TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase HTH_11 PF08279.7 gi|662859420|ref|YP_006348900.2| - 0.057 13.0 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_psq PF05225.11 gi|662859420|ref|YP_006348900.2| - 0.081 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Pro_dh PF01619.13 gi|389846662|ref|YP_006348901.1| - 2.6e-36 125.1 0.0 5.8e-36 124.0 0.0 1.5 1 1 0 1 1 1 1 Proline dehydrogenase Peripla_BP_6 PF13458.1 gi|389846663|ref|YP_006348902.1| - 1.6e-39 136.2 8.1 1.9e-39 135.9 5.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|389846663|ref|YP_006348902.1| - 6.8e-29 100.7 0.5 9.5e-29 100.2 0.3 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|389846663|ref|YP_006348902.1| - 2.9e-07 29.5 1.9 0.00037 19.3 0.1 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain tRNA-synt_1d PF00750.14 gi|389846663|ref|YP_006348902.1| - 0.025 13.3 0.1 0.037 12.8 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (R) LppC PF04348.8 gi|389846663|ref|YP_006348902.1| - 0.061 11.8 0.0 0.072 11.6 0.0 1.1 1 0 0 1 1 1 0 LppC putative lipoprotein BPD_transp_2 PF02653.11 gi|389846664|ref|YP_006348903.1| - 8.3e-43 146.2 38.2 1e-42 145.9 26.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF997 PF06196.7 gi|389846664|ref|YP_006348903.1| - 0.00083 18.8 0.5 0.0041 16.6 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF997) BPD_transp_2 PF02653.11 gi|389846665|ref|YP_006348904.1| - 2.7e-52 177.3 30.4 2.7e-52 177.3 21.1 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|389846665|ref|YP_006348904.1| - 0.05 13.1 0.0 0.15 11.5 0.0 1.8 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 ABC_tran PF00005.22 gi|389846666|ref|YP_006348905.1| - 1.7e-31 109.3 0.0 2.4e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389846666|ref|YP_006348905.1| - 4.5e-12 46.5 0.5 6.3e-10 39.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|389846666|ref|YP_006348905.1| - 1.4e-08 34.2 0.0 2.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|389846666|ref|YP_006348905.1| - 1e-05 24.8 0.1 5.2e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|389846666|ref|YP_006348905.1| - 0.00032 21.0 0.6 0.00067 20.0 0.3 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|389846666|ref|YP_006348905.1| - 0.00072 19.0 0.1 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389846666|ref|YP_006348905.1| - 0.0076 15.4 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|389846666|ref|YP_006348905.1| - 0.028 13.4 0.1 2.1 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|389846666|ref|YP_006348905.1| - 0.06 13.3 0.1 0.11 12.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|389846666|ref|YP_006348905.1| - 0.099 12.6 0.4 1.9 8.4 0.2 2.1 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|389846666|ref|YP_006348905.1| - 0.1 11.1 0.2 0.38 9.2 0.0 1.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|389846666|ref|YP_006348905.1| - 0.11 11.9 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|389846667|ref|YP_006348906.1| - 4.3e-32 111.2 0.0 5.9e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389846667|ref|YP_006348906.1| - 2.2e-13 50.8 0.0 6.2e-11 42.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|389846667|ref|YP_006348906.1| - 6.4e-05 23.3 0.0 0.00015 22.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389846667|ref|YP_006348906.1| - 9.1e-05 21.7 0.0 0.0095 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389846667|ref|YP_006348906.1| - 0.00035 20.0 0.0 0.00061 19.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389846667|ref|YP_006348906.1| - 0.00086 19.3 0.4 0.0034 17.4 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389846667|ref|YP_006348906.1| - 0.0012 18.9 0.1 0.0047 17.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|389846667|ref|YP_006348906.1| - 0.0016 17.6 0.0 0.003 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|389846667|ref|YP_006348906.1| - 0.0077 15.3 0.0 0.071 12.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|389846667|ref|YP_006348906.1| - 0.0083 16.3 0.1 0.058 13.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|389846667|ref|YP_006348906.1| - 0.017 14.7 0.0 0.05 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|389846667|ref|YP_006348906.1| - 0.021 14.2 0.0 0.36 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|389846667|ref|YP_006348906.1| - 0.029 14.2 0.0 0.085 12.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|389846667|ref|YP_006348906.1| - 0.031 14.0 0.0 0.059 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|389846667|ref|YP_006348906.1| - 0.032 15.0 2.0 0.054 14.3 0.8 1.8 2 1 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|389846667|ref|YP_006348906.1| - 0.033 13.6 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|389846667|ref|YP_006348906.1| - 0.037 13.8 0.0 0.063 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|389846667|ref|YP_006348906.1| - 0.045 12.6 0.0 0.11 11.3 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|389846667|ref|YP_006348906.1| - 0.07 12.8 0.1 0.61 9.7 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|389846667|ref|YP_006348906.1| - 0.076 12.4 0.1 0.12 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389846667|ref|YP_006348906.1| - 0.15 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|389846667|ref|YP_006348906.1| - 0.17 11.8 0.2 0.6 10.0 0.1 2.0 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|389846667|ref|YP_006348906.1| - 0.18 10.6 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|389846667|ref|YP_006348906.1| - 0.18 12.0 0.3 0.77 10.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain APH PF01636.18 gi|389846668|ref|YP_006348907.1| - 1.7e-09 37.7 2.8 0.00017 21.3 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|389846668|ref|YP_006348907.1| - 1.6e-08 34.1 0.0 2.5e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|389846668|ref|YP_006348907.1| - 1.4e-06 27.5 0.0 2.6e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|389846668|ref|YP_006348907.1| - 6.2e-05 22.2 0.0 8.6e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|389846668|ref|YP_006348907.1| - 0.017 14.2 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein tyrosine kinase Usp PF00582.21 gi|389846669|ref|YP_006348908.1| - 1.1e-37 129.3 3.9 1.2e-37 129.2 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family CobN-Mg_chel PF02514.11 gi|389846669|ref|YP_006348908.1| - 0.039 11.3 0.0 0.042 11.2 0.0 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase Acyl-CoA_dh_1 PF00441.19 gi|389846670|ref|YP_006348909.1| - 4.1e-48 163.2 0.3 6.5e-48 162.6 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389846670|ref|YP_006348909.1| - 1.8e-35 121.8 0.1 3.6e-35 120.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389846670|ref|YP_006348909.1| - 1.2e-17 63.1 0.3 5.1e-17 61.1 0.1 2.0 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|389846670|ref|YP_006348909.1| - 1.2e-14 54.7 0.3 2.6e-14 53.6 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Arch_fla_DE PF04659.8 gi|389846671|ref|YP_006348910.1| - 1.4e-16 60.1 0.0 1.8e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein PAS_4 PF08448.5 gi|389846672|ref|YP_006348911.1| - 5.9e-24 84.2 4.5 2.4e-13 50.0 0.2 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|389846672|ref|YP_006348911.1| - 3.7e-22 78.2 0.1 1.2e-10 41.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|389846672|ref|YP_006348911.1| - 1.3e-18 67.2 0.1 1.5e-11 44.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|389846672|ref|YP_006348911.1| - 8.3e-17 61.0 0.0 3e-16 59.2 0.0 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|389846672|ref|YP_006348911.1| - 2e-12 46.8 0.0 5.8e-12 45.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|389846672|ref|YP_006348911.1| - 8.7e-09 34.9 0.0 0.0015 18.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|389846672|ref|YP_006348911.1| - 8.2e-06 25.7 1.5 2.4e-05 24.2 1.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|389846672|ref|YP_006348911.1| - 9.1e-05 22.3 0.0 0.00019 21.3 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|389846672|ref|YP_006348911.1| - 0.00081 19.6 0.0 0.6 10.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|389846672|ref|YP_006348911.1| - 0.0015 18.5 0.2 1.4 8.9 0.0 3.7 2 2 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|389846672|ref|YP_006348911.1| - 0.0026 17.4 0.1 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|389846672|ref|YP_006348911.1| - 0.1 12.1 0.9 0.21 11.1 0.6 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain BcrAD_BadFG PF01869.15 gi|389846673|ref|YP_006348912.1| - 0.0014 18.0 0.0 0.075 12.3 0.0 2.4 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family HSP70 PF00012.15 gi|389846673|ref|YP_006348912.1| - 0.085 10.7 0.0 0.18 9.7 0.0 1.4 2 0 0 2 2 2 0 Hsp70 protein Actin PF00022.14 gi|389846673|ref|YP_006348912.1| - 0.13 10.6 0.0 0.21 9.9 0.0 1.3 1 0 0 1 1 1 0 Actin Arch_fla_DE PF04659.8 gi|389846674|ref|YP_006348913.1| - 3.8e-26 90.8 0.0 5.2e-26 90.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein DUF835 PF05763.7 gi|389846674|ref|YP_006348913.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) CheD PF03975.8 gi|662859421|ref|YP_006348914.2| - 5.5e-29 100.2 0.0 6.8e-29 99.9 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|389846676|ref|YP_006348915.1| - 2.2e-25 88.0 0.1 2.8e-13 49.3 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|389846676|ref|YP_006348915.1| - 7.2e-22 77.0 0.0 1.5e-09 37.5 0.0 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.19 gi|662859422|ref|YP_006348916.2| - 7.9e-30 103.1 0.1 9e-30 102.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CoA_binding_2 PF13380.1 gi|662859422|ref|YP_006348916.2| - 0.1 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 CoA binding domain HTH_20 PF12840.2 gi|389846679|ref|YP_006348918.1| - 7.7e-09 35.2 0.1 1.3e-08 34.4 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389846679|ref|YP_006348918.1| - 7.2e-05 22.3 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|389846679|ref|YP_006348918.1| - 0.0009 18.5 0.0 0.0014 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389846679|ref|YP_006348918.1| - 0.0024 17.5 0.0 0.0063 16.1 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389846679|ref|YP_006348918.1| - 0.0027 17.2 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389846679|ref|YP_006348918.1| - 0.0044 16.6 0.0 0.0065 16.1 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF4368 PF14287.1 gi|389846679|ref|YP_006348918.1| - 0.061 13.1 0.1 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4368) HTH_23 PF13384.1 gi|389846679|ref|YP_006348918.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HemN_C PF06969.11 gi|389846679|ref|YP_006348918.1| - 0.073 13.1 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 HemN C-terminal domain Spore_YhcN_YlaJ PF09580.5 gi|389846679|ref|YP_006348918.1| - 0.87 9.6 3.1 1.1 9.3 2.2 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Arch_flagellin PF01917.11 gi|389846680|ref|YP_006348919.1| - 3.5e-33 114.8 12.2 4.4e-33 114.4 8.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|389846681|ref|YP_006348920.1| - 5.4e-36 123.9 9.5 6.7e-36 123.6 6.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin CarboxypepD_reg PF13620.1 gi|389846681|ref|YP_006348920.1| - 0.017 15.1 0.5 0.048 13.7 0.2 2.2 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain Cadherin-like PF12733.2 gi|389846681|ref|YP_006348920.1| - 0.75 10.1 6.2 3.3 8.0 0.5 2.4 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain KaiC PF06745.8 gi|389846683|ref|YP_006348922.1| - 3.1e-51 173.6 0.0 3.5e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|389846683|ref|YP_006348922.1| - 9.9e-11 41.3 0.0 3e-10 39.8 0.0 1.7 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|389846683|ref|YP_006348922.1| - 0.0012 17.9 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|389846683|ref|YP_006348922.1| - 0.0062 16.1 0.1 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|389846683|ref|YP_006348922.1| - 0.043 12.6 0.0 0.074 11.9 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain FtsK_SpoIIIE PF01580.13 gi|389846683|ref|YP_006348922.1| - 0.049 13.0 0.1 0.089 12.2 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|389846683|ref|YP_006348922.1| - 0.058 13.3 0.1 0.13 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.6 gi|389846683|ref|YP_006348922.1| - 0.079 11.7 0.5 7 5.3 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein AAA_22 PF13401.1 gi|389846683|ref|YP_006348922.1| - 0.093 12.8 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|389846683|ref|YP_006348922.1| - 0.13 11.9 0.1 0.26 11.0 0.0 1.6 1 1 0 1 1 1 0 Part of AAA domain FlaC_arch PF05377.6 gi|389846684|ref|YP_006348923.1| - 8.9e-20 70.3 0.4 8.9e-20 70.3 0.2 2.9 4 0 0 4 4 4 1 Flagella accessory protein C (FlaC) Arch_fla_DE PF04659.8 gi|389846684|ref|YP_006348923.1| - 6e-19 67.7 0.2 1.8e-18 66.1 0.0 1.9 2 0 0 2 2 2 1 Archaeal flagella protein DUF812 PF05667.6 gi|389846684|ref|YP_006348923.1| - 0.01 14.3 0.0 0.01 14.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF812) TBPIP PF07106.8 gi|389846684|ref|YP_006348923.1| - 0.011 15.3 0.2 0.011 15.3 0.1 2.8 2 1 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|389846684|ref|YP_006348923.1| - 0.063 12.8 0.1 0.063 12.8 0.0 3.2 3 1 1 4 4 4 0 IncA protein DUF972 PF06156.8 gi|389846684|ref|YP_006348923.1| - 0.1 12.9 0.2 0.1 12.9 0.1 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|389846684|ref|YP_006348923.1| - 0.13 12.5 0.1 0.13 12.5 0.1 3.2 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein bZIP_1 PF00170.16 gi|389846684|ref|YP_006348923.1| - 0.15 12.0 0.3 0.15 12.0 0.2 2.7 3 0 0 3 3 3 0 bZIP transcription factor Cauli_AT PF03233.8 gi|389846684|ref|YP_006348923.1| - 0.19 11.4 1.1 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 Aphid transmission protein Arch_flagellin PF01917.11 gi|389846685|ref|YP_006348924.1| - 3.3e-06 26.8 8.1 8.5e-06 25.5 5.6 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin FctA PF12892.2 gi|389846685|ref|YP_006348924.1| - 0.13 13.0 3.4 0.12 13.1 1.2 1.9 1 1 1 2 2 2 0 T surface-antigen of pili DUF366 PF04017.7 gi|389846685|ref|YP_006348924.1| - 0.15 11.3 0.3 1.5 8.0 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF366) Arch_flagellin PF01917.11 gi|389846686|ref|YP_006348925.1| - 2.5e-12 46.8 2.9 4.4e-12 46.0 2.0 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|389846686|ref|YP_006348925.1| - 5.7e-07 29.5 1.0 7.6e-07 29.1 0.7 1.2 1 0 0 1 1 1 1 CARDB KaiC PF06745.8 gi|389846687|ref|YP_006348926.1| - 1.3e-17 63.7 0.1 2.2e-17 62.9 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|389846687|ref|YP_006348926.1| - 5.5e-07 29.1 0.0 9.7e-07 28.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|389846687|ref|YP_006348926.1| - 1.8e-05 24.4 0.1 0.00011 21.9 0.0 2.0 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|389846687|ref|YP_006348926.1| - 6.3e-05 23.1 0.1 0.00015 21.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|389846687|ref|YP_006348926.1| - 6.5e-05 22.5 0.0 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|389846687|ref|YP_006348926.1| - 0.0005 20.1 0.1 0.00072 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Resolvase PF00239.16 gi|389846687|ref|YP_006348926.1| - 0.0006 19.6 0.1 0.00095 19.0 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain AAA PF00004.24 gi|389846687|ref|YP_006348926.1| - 0.02 15.0 0.5 0.052 13.7 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|389846687|ref|YP_006348926.1| - 0.049 13.9 0.1 0.1 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|389846687|ref|YP_006348926.1| - 0.059 12.0 0.0 1.4 7.5 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus FF PF01846.14 gi|389846687|ref|YP_006348926.1| - 0.093 12.7 0.1 0.28 11.1 0.1 1.8 1 1 1 2 2 2 0 FF domain PAXNEB PF05625.6 gi|389846687|ref|YP_006348926.1| - 0.13 11.0 0.1 0.25 10.1 0.1 1.4 2 0 0 2 2 2 0 PAXNEB protein T2SE PF00437.15 gi|389846688|ref|YP_006348927.1| - 3.9e-45 153.8 0.0 5.5e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|389846688|ref|YP_006348927.1| - 0.00081 19.4 0.0 0.017 15.1 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|389846688|ref|YP_006348927.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|389846688|ref|YP_006348927.1| - 0.0036 17.4 0.0 0.0076 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|389846688|ref|YP_006348927.1| - 0.024 14.9 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Dynamin_N PF00350.18 gi|389846688|ref|YP_006348927.1| - 0.064 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.13 gi|389846688|ref|YP_006348927.1| - 0.076 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family GTP_EFTU PF00009.22 gi|389846688|ref|YP_006348927.1| - 0.094 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|389846688|ref|YP_006348927.1| - 0.098 11.7 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 AIG1 family Zeta_toxin PF06414.7 gi|389846688|ref|YP_006348927.1| - 0.11 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|389846688|ref|YP_006348927.1| - 0.12 12.8 0.0 1 9.8 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein MMR_HSR1 PF01926.18 gi|389846688|ref|YP_006348927.1| - 0.15 12.0 0.0 0.4 10.6 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|389846688|ref|YP_006348927.1| - 0.16 12.3 1.8 0.2 11.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|389846689|ref|YP_006348928.1| - 1.2e-13 51.1 2.8 8.1e-10 38.6 0.2 3.6 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|389846689|ref|YP_006348928.1| - 0.056 12.1 0.1 0.087 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain CheF-arch PF04283.7 gi|389846690|ref|YP_006348929.1| - 5.2e-36 123.9 0.0 7.3e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HemN_C PF06969.11 gi|389846690|ref|YP_006348929.1| - 0.086 12.9 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 HemN C-terminal domain CheF-arch PF04283.7 gi|389846691|ref|YP_006348930.1| - 1.1e-51 175.1 0.2 1.6e-51 174.6 0.1 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea CheR PF01739.13 gi|389846692|ref|YP_006348931.1| - 4e-50 169.8 0.0 5.4e-50 169.4 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain Methyltransf_12 PF08242.7 gi|389846692|ref|YP_006348931.1| - 6.4e-09 36.1 0.0 4.3e-06 27.1 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain CheR_N PF03705.10 gi|389846692|ref|YP_006348931.1| - 1.4e-08 33.9 2.1 3.3e-08 32.7 1.5 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.1 gi|389846692|ref|YP_006348931.1| - 1.1e-05 25.7 0.0 2.5e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846692|ref|YP_006348931.1| - 1.4e-05 25.5 0.0 3.4e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846692|ref|YP_006348931.1| - 9.8e-05 22.1 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846692|ref|YP_006348931.1| - 0.00017 22.0 0.1 0.0042 17.5 0.0 2.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846692|ref|YP_006348931.1| - 0.0011 18.6 0.0 0.48 10.0 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain DUF1690 PF07956.6 gi|389846692|ref|YP_006348931.1| - 0.021 14.8 0.3 0.034 14.1 0.2 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) NodS PF05401.6 gi|389846692|ref|YP_006348931.1| - 0.053 12.8 0.0 0.089 12.1 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Acetyltransf_6 PF13480.1 gi|389846692|ref|YP_006348931.1| - 0.67 9.9 7.6 0.2 11.5 0.8 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain HATPase_c PF02518.21 gi|389846693|ref|YP_006348932.1| - 7.7e-23 80.3 0.3 2.7e-22 78.5 0.2 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|389846693|ref|YP_006348932.1| - 1.8e-19 69.5 2.9 3e-19 68.8 1.3 2.0 2 0 0 2 2 2 1 CheW-like domain Hpt PF01627.18 gi|389846693|ref|YP_006348932.1| - 9.6e-19 67.1 2.4 1.2e-18 66.8 0.2 2.3 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.9 gi|389846693|ref|YP_006348932.1| - 4e-09 36.6 8.2 4.8e-09 36.4 4.1 2.4 3 0 0 3 3 3 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|389846693|ref|YP_006348932.1| - 2.3e-08 33.7 0.0 8.8e-08 31.9 0.0 2.1 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|389846693|ref|YP_006348932.1| - 0.0016 18.2 0.1 0.0069 16.1 0.1 2.2 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|389846693|ref|YP_006348932.1| - 0.053 13.2 0.0 0.23 11.1 0.0 2.1 1 1 0 1 1 1 0 GHKL domain TATR PF03430.8 gi|389846693|ref|YP_006348932.1| - 0.085 11.4 5.4 0.13 10.8 3.7 1.2 1 0 0 1 1 1 0 Trans-activating transcriptional regulator Nop14 PF04147.7 gi|389846693|ref|YP_006348932.1| - 0.21 9.4 23.2 0.39 8.5 16.1 1.3 1 0 0 1 1 1 0 Nop14-like family CheB_methylest PF01339.12 gi|662859423|ref|YP_006348933.2| - 3.2e-61 205.9 0.3 6.3e-61 204.9 0.2 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|662859423|ref|YP_006348933.2| - 4.5e-26 91.0 1.3 1.5e-25 89.3 0.9 1.9 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.14 gi|662859424|ref|YP_006348934.2| - 3.4e-26 91.3 0.1 3.8e-26 91.1 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain Xan_ur_permease PF00860.15 gi|389846696|ref|YP_006348935.1| - 2.2e-69 233.8 44.4 1.6e-68 230.9 30.8 2.3 1 1 0 1 1 1 1 Permease family Copper-bind PF00127.15 gi|389846697|ref|YP_006348936.1| - 5.5e-14 52.2 0.3 2.3e-13 50.1 0.2 2.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|389846697|ref|YP_006348936.1| - 0.00053 19.7 0.5 0.00053 19.7 0.4 3.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence OEP PF02321.13 gi|389846697|ref|YP_006348936.1| - 0.0098 15.4 0.3 0.034 13.7 0.2 1.9 1 0 0 1 1 1 1 Outer membrane efflux protein Cupredoxin_1 PF13473.1 gi|389846697|ref|YP_006348936.1| - 0.11 12.3 0.1 0.66 9.8 0.1 2.0 1 1 0 1 1 1 0 Cupredoxin-like domain MS_channel PF00924.13 gi|389846698|ref|YP_006348937.1| - 2.3e-46 157.7 0.0 3.4e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF457 PF04307.9 gi|389846699|ref|YP_006348938.1| - 2.3e-17 62.7 12.5 2.8e-17 62.5 8.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CMD PF02627.15 gi|389846700|ref|YP_006348939.1| - 1.1e-09 37.9 0.1 1.8e-08 34.1 0.1 2.3 1 1 1 2 2 2 1 Carboxymuconolactone decarboxylase family CSD PF00313.17 gi|389846701|ref|YP_006348940.1| - 2.2e-21 75.3 0.3 2.4e-21 75.2 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|389846701|ref|YP_006348940.1| - 0.0073 16.0 0.3 0.0095 15.6 0.2 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|389846701|ref|YP_006348940.1| - 0.011 15.2 2.0 0.016 14.6 1.4 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|389846701|ref|YP_006348940.1| - 0.025 14.4 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Creatininase PF02633.9 gi|389846702|ref|YP_006348941.1| - 3.7e-66 222.6 0.3 4.2e-66 222.4 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase AMP-binding PF00501.23 gi|662859425|ref|YP_006348942.2| - 1.2e-81 274.2 0.0 1.5e-81 273.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|662859425|ref|YP_006348942.2| - 3.1e-21 76.0 0.1 1.1e-20 74.3 0.2 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aldo_ket_red PF00248.16 gi|662859426|ref|YP_006348944.2| - 2.6e-75 252.8 0.0 3e-75 252.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MBOAT_2 PF13813.1 gi|389846706|ref|YP_006348945.1| - 0.032 14.2 1.2 0.084 12.9 0.7 1.8 1 1 1 2 2 2 0 Membrane bound O-acyl transferase family Polysacc_synt_C PF14667.1 gi|389846706|ref|YP_006348945.1| - 0.2 11.4 15.2 0.3 10.8 10.5 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF2975 PF11188.3 gi|389846706|ref|YP_006348945.1| - 0.42 10.3 14.8 1.5 8.5 9.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) MFS_1 PF07690.11 gi|389846707|ref|YP_006348946.1| - 1.7e-34 119.1 66.0 6.3e-22 77.7 20.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3482 PF11981.3 gi|389846707|ref|YP_006348946.1| - 0.46 9.6 5.3 0.99 8.5 3.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Iron_transport PF10634.4 gi|389846708|ref|YP_006348947.1| - 2.6e-08 33.8 0.0 5.2e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein SCO1-SenC PF02630.9 gi|389846709|ref|YP_006348948.1| - 3.2e-11 43.1 0.0 4.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.4 gi|389846710|ref|YP_006348949.1| - 0.00042 20.1 3.2 0.00042 20.1 2.2 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DsbD PF02683.10 gi|389846711|ref|YP_006348950.1| - 1.1e-12 48.0 16.0 1.5e-12 47.5 11.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|389846712|ref|YP_006348951.1| - 1.5e-12 47.2 0.0 1.9e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|389846712|ref|YP_006348951.1| - 9.7e-11 41.4 0.0 1.2e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|389846712|ref|YP_006348951.1| - 8.3e-10 38.6 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|389846712|ref|YP_006348951.1| - 3.1e-07 30.5 0.0 4.3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|389846712|ref|YP_006348951.1| - 1.2e-05 24.9 0.0 0.00062 19.4 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|389846712|ref|YP_006348951.1| - 0.022 14.7 0.0 4.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin-like TAT_signal PF10518.4 gi|389846712|ref|YP_006348951.1| - 1.5 9.0 5.3 3.8 7.7 3.5 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Thioredoxin_4 PF13462.1 gi|389846713|ref|YP_006348952.1| - 1.7e-34 119.1 0.0 2.1e-34 118.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|389846713|ref|YP_006348952.1| - 2.2e-08 33.8 1.6 0.00056 19.5 0.1 2.2 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|389846713|ref|YP_006348952.1| - 0.0014 18.7 0.1 0.0065 16.6 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Fer2 PF00111.22 gi|662859427|ref|YP_006348954.2| - 8e-09 35.1 0.1 1.2e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|662859427|ref|YP_006348954.2| - 0.072 12.9 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|662859427|ref|YP_006348954.2| - 0.086 12.6 0.2 0.15 11.8 0.1 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NUDIX PF00293.23 gi|389846716|ref|YP_006348955.1| - 6.4e-20 71.1 0.2 9.9e-20 70.5 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain DUF3862 PF12978.2 gi|389846717|ref|YP_006348956.1| - 0.12 12.0 0.1 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3862) RNA_binding PF01877.12 gi|389846718|ref|YP_006348957.1| - 2.8e-31 108.0 0.6 3.6e-31 107.6 0.3 1.2 1 1 0 1 1 1 1 RNA binding DUF3964 PF13107.1 gi|389846718|ref|YP_006348957.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3964) AhpC-TSA PF00578.16 gi|389846719|ref|YP_006348958.1| - 9.7e-18 64.0 0.0 1.3e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389846719|ref|YP_006348958.1| - 1.2e-13 50.8 0.0 1.6e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|389846719|ref|YP_006348958.1| - 0.00015 21.8 0.0 0.00023 21.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|389846719|ref|YP_006348958.1| - 0.027 14.6 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like TatD_DNase PF01026.16 gi|389846719|ref|YP_006348958.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase EamA PF00892.15 gi|389846720|ref|YP_006348959.1| - 2.2e-08 34.1 13.2 2.2e-08 34.1 9.1 1.4 1 1 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|389846720|ref|YP_006348959.1| - 0.0039 17.3 11.0 0.0039 17.3 7.6 2.1 1 1 1 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|389846720|ref|YP_006348959.1| - 0.038 13.6 12.0 0.057 13.0 8.3 1.3 1 1 0 1 1 1 0 Triose-phosphate Transporter family OCIA PF07051.6 gi|389846720|ref|YP_006348959.1| - 0.18 11.2 0.4 0.3 10.5 0.2 1.5 1 1 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) PMT_2 PF13231.1 gi|389846720|ref|YP_006348959.1| - 3.8 7.3 11.5 19 5.1 8.0 2.3 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC2_membrane_5 PF13346.1 gi|389846720|ref|YP_006348959.1| - 6.3 6.0 11.0 0.11 11.8 0.9 2.0 1 1 0 2 2 2 0 ABC-2 family transporter protein zf-Di19 PF05605.7 gi|389846721|ref|YP_006348960.1| - 0.086 12.9 0.2 0.24 11.5 0.1 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding SnoaL PF07366.7 gi|389846722|ref|YP_006348961.1| - 3.7e-18 65.3 0.2 4.2e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|389846722|ref|YP_006348961.1| - 9.9e-09 35.5 1.6 1.4e-08 35.0 1.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain TauE PF01925.14 gi|389846723|ref|YP_006348962.1| - 0.0066 15.9 3.9 0.0073 15.7 2.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Gly-zipper_OmpA PF13436.1 gi|389846723|ref|YP_006348962.1| - 0.11 12.1 1.4 0.12 12.0 0.9 1.1 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Rhomboid PF01694.17 gi|389846723|ref|YP_006348962.1| - 0.56 10.2 3.4 0.9 9.5 2.4 1.4 1 1 0 1 1 1 0 Rhomboid family MFS_1 PF07690.11 gi|389846724|ref|YP_006348963.1| - 3.7e-38 131.1 47.2 3.2e-21 75.4 11.9 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|389846724|ref|YP_006348963.1| - 0.012 13.6 0.0 0.012 13.6 0.0 2.8 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.19 gi|389846724|ref|YP_006348963.1| - 0.55 8.7 25.9 0.22 10.0 12.7 2.8 2 1 0 2 2 2 0 Sugar (and other) transporter DUF58 PF01882.13 gi|389846725|ref|YP_006348964.1| - 1.5e-20 73.1 0.0 5.9e-20 71.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|389846725|ref|YP_006348964.1| - 0.015 14.4 0.0 0.056 12.5 0.0 1.9 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|389846725|ref|YP_006348964.1| - 0.028 14.5 0.1 0.038 14.1 0.1 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.6 gi|389846726|ref|YP_006348965.1| - 5.9e-62 207.0 0.1 9.3e-62 206.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389846726|ref|YP_006348965.1| - 4.1e-12 46.0 0.0 7.1e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|389846726|ref|YP_006348965.1| - 1.9e-08 33.5 0.0 7.1e-07 28.3 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|389846726|ref|YP_006348965.1| - 6.9e-07 29.5 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|389846726|ref|YP_006348965.1| - 0.00029 20.3 0.0 0.0027 17.2 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|389846726|ref|YP_006348965.1| - 0.008 15.2 0.1 0.082 11.9 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|389846726|ref|YP_006348965.1| - 0.0097 15.0 0.0 0.16 11.0 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Titin_Z PF09042.6 gi|389846727|ref|YP_006348966.1| - 0.55 9.8 3.5 1.3 8.6 2.4 1.6 1 0 0 1 1 1 0 Titin Z IncA PF04156.9 gi|389846728|ref|YP_006348967.1| - 1.5e-11 44.2 29.1 4.4e-09 36.2 13.7 2.2 1 1 1 2 2 2 2 IncA protein Laminin_II PF06009.7 gi|389846728|ref|YP_006348967.1| - 1.8e-10 40.7 23.9 1.8e-08 34.2 7.6 3.1 1 1 2 3 3 3 3 Laminin Domain II Myosin_tail_1 PF01576.14 gi|389846728|ref|YP_006348967.1| - 3.4e-08 31.7 34.0 2.7e-07 28.7 15.0 2.0 1 1 1 2 2 2 2 Myosin tail Tropomyosin_1 PF12718.2 gi|389846728|ref|YP_006348967.1| - 5.2e-08 32.8 38.4 0.001 18.9 8.7 2.6 1 1 2 3 3 3 3 Tropomyosin like ADIP PF11559.3 gi|389846728|ref|YP_006348967.1| - 7.4e-08 32.4 32.7 0.0011 18.8 8.8 2.4 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding TPR_MLP1_2 PF07926.7 gi|389846728|ref|YP_006348967.1| - 7.5e-08 32.2 33.3 1.2e-07 31.5 19.9 2.1 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.3 gi|389846728|ref|YP_006348967.1| - 8.2e-08 31.9 41.9 2.7e-06 27.0 9.1 3.1 1 1 1 3 3 3 3 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|389846728|ref|YP_006348967.1| - 2.6e-07 29.9 24.1 3.6e-05 22.8 12.1 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Filament PF00038.16 gi|389846728|ref|YP_006348967.1| - 7.9e-07 28.8 27.5 1.3e-05 24.8 9.4 2.1 1 1 1 2 2 2 2 Intermediate filament protein DUF3450 PF11932.3 gi|389846728|ref|YP_006348967.1| - 1.3e-06 27.8 23.2 0.00083 18.6 5.3 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Spc7 PF08317.6 gi|389846728|ref|YP_006348967.1| - 3.1e-06 26.1 28.2 1.1e-05 24.2 19.6 1.7 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF4201 PF13870.1 gi|389846728|ref|YP_006348967.1| - 5.1e-06 26.0 25.7 0.00061 19.2 8.8 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) DivIC PF04977.10 gi|389846728|ref|YP_006348967.1| - 6.1e-06 25.6 32.2 0.0064 15.9 3.3 4.5 1 1 2 3 3 3 2 Septum formation initiator DUF869 PF05911.6 gi|389846728|ref|YP_006348967.1| - 1.2e-05 23.7 27.6 0.00012 20.5 10.5 2.0 1 1 1 2 2 2 2 Plant protein of unknown function (DUF869) Mod_r PF07200.8 gi|389846728|ref|YP_006348967.1| - 1.2e-05 25.2 28.5 0.0071 16.2 7.6 2.4 1 1 2 3 3 3 3 Modifier of rudimentary (Mod(r)) protein Reo_sigmaC PF04582.7 gi|389846728|ref|YP_006348967.1| - 1.5e-05 24.3 16.1 0.0005 19.3 7.0 1.9 1 1 0 1 1 1 1 Reovirus sigma C capsid protein Rab5-bind PF09311.6 gi|389846728|ref|YP_006348967.1| - 1.9e-05 24.6 33.8 0.0095 15.8 5.4 2.0 1 1 1 2 2 2 2 Rabaptin-like protein AAA_13 PF13166.1 gi|389846728|ref|YP_006348967.1| - 2.4e-05 23.0 22.0 3.4e-05 22.5 15.3 1.1 1 0 0 1 1 1 1 AAA domain EzrA PF06160.7 gi|389846728|ref|YP_006348967.1| - 2.6e-05 22.6 21.3 7.2e-05 21.1 14.7 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA TBPIP PF07106.8 gi|389846728|ref|YP_006348967.1| - 3e-05 23.6 29.8 0.019 14.5 7.7 2.1 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Rootletin PF15035.1 gi|389846728|ref|YP_006348967.1| - 3e-05 24.0 33.2 0.0098 15.8 5.6 2.3 1 1 1 2 2 2 2 Ciliary rootlet component, centrosome cohesion COG2 PF06148.6 gi|389846728|ref|YP_006348967.1| - 3.4e-05 23.7 18.1 0.003 17.4 2.8 3.2 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 BLOC1_2 PF10046.4 gi|389846728|ref|YP_006348967.1| - 3.7e-05 23.7 26.7 0.0034 17.4 5.8 3.4 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.6 gi|389846728|ref|YP_006348967.1| - 3.8e-05 23.6 33.9 0.00071 19.4 23.7 2.0 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) WEMBL PF05701.6 gi|389846728|ref|YP_006348967.1| - 4.7e-05 22.0 22.7 6.8e-05 21.5 15.7 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light SlyX PF04102.7 gi|389846728|ref|YP_006348967.1| - 6.5e-05 23.2 6.1 6.5e-05 23.2 4.2 3.8 1 1 2 3 3 3 1 SlyX Prefoldin_2 PF01920.15 gi|389846728|ref|YP_006348967.1| - 7.5e-05 22.4 33.2 0.033 13.9 2.0 4.1 1 1 3 4 4 4 2 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|389846728|ref|YP_006348967.1| - 9.9e-05 22.2 34.2 0.0094 15.8 12.0 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4618 PF15397.1 gi|389846728|ref|YP_006348967.1| - 0.0001 21.7 28.1 0.00074 18.9 10.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) Tropomyosin PF00261.15 gi|389846728|ref|YP_006348967.1| - 0.00013 21.1 18.9 0.00013 21.1 13.1 2.9 1 1 2 3 3 3 3 Tropomyosin CCDC155 PF14662.1 gi|389846728|ref|YP_006348967.1| - 0.00014 21.5 33.2 0.0036 16.9 11.2 2.0 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 MscS_porin PF12795.2 gi|389846728|ref|YP_006348967.1| - 0.00019 20.8 35.9 0.00078 18.8 24.9 1.8 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain Laminin_I PF06008.9 gi|389846728|ref|YP_006348967.1| - 0.00023 20.5 26.6 0.00046 19.5 8.8 2.2 1 1 1 2 2 2 2 Laminin Domain I Prominin PF05478.6 gi|389846728|ref|YP_006348967.1| - 0.00024 18.8 13.9 0.00049 17.8 9.6 1.5 1 1 0 1 1 1 1 Prominin ERM PF00769.14 gi|389846728|ref|YP_006348967.1| - 0.00025 20.6 31.0 0.00033 20.2 10.9 2.1 1 1 1 2 2 2 1 Ezrin/radixin/moesin family FlxA PF14282.1 gi|389846728|ref|YP_006348967.1| - 0.00033 20.5 7.5 0.00033 20.5 5.2 3.1 1 1 2 3 3 3 1 FlxA-like protein FliJ PF02050.11 gi|389846728|ref|YP_006348967.1| - 0.00033 20.7 20.8 0.0089 16.0 2.4 2.8 1 1 2 3 3 3 2 Flagellar FliJ protein DUF4200 PF13863.1 gi|389846728|ref|YP_006348967.1| - 0.00033 20.5 29.0 0.0051 16.7 11.0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) HlyD PF00529.15 gi|389846728|ref|YP_006348967.1| - 0.00036 19.9 22.7 0.0032 16.8 8.4 2.1 1 1 1 2 2 2 1 HlyD family secretion protein DUF1664 PF07889.7 gi|389846728|ref|YP_006348967.1| - 0.00036 20.3 20.6 0.015 15.0 6.5 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|389846728|ref|YP_006348967.1| - 0.00043 20.4 23.5 0.0045 17.1 6.9 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Spectrin PF00435.16 gi|389846728|ref|YP_006348967.1| - 0.00053 20.2 22.8 0.0077 16.5 8.9 2.1 2 0 0 2 2 2 1 Spectrin repeat PspA_IM30 PF04012.7 gi|389846728|ref|YP_006348967.1| - 0.00055 19.3 25.4 0.12 11.7 2.2 3.3 1 1 2 3 3 3 1 PspA/IM30 family YscO PF07321.7 gi|389846728|ref|YP_006348967.1| - 0.00062 19.6 27.4 0.12 12.2 0.4 3.2 1 1 2 3 3 3 1 Type III secretion protein YscO DUF2968 PF11180.3 gi|389846728|ref|YP_006348967.1| - 0.0013 18.1 27.0 0.032 13.6 4.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF2968) CCDC144C PF14915.1 gi|389846728|ref|YP_006348967.1| - 0.0015 17.5 25.1 0.0023 16.9 17.4 1.3 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region DUF904 PF06005.7 gi|389846728|ref|YP_006348967.1| - 0.0018 18.5 37.5 0.15 12.3 10.1 4.0 1 1 1 2 2 2 1 Protein of unknown function (DUF904) Mnd1 PF03962.10 gi|389846728|ref|YP_006348967.1| - 0.0018 17.9 28.0 0.0034 17.0 7.9 2.3 1 1 1 2 2 2 1 Mnd1 family GAS PF13851.1 gi|389846728|ref|YP_006348967.1| - 0.0019 17.4 28.9 0.04 13.1 9.9 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Syntaxin-6_N PF09177.6 gi|389846728|ref|YP_006348967.1| - 0.0021 18.4 24.7 0.023 15.0 5.2 2.7 1 1 1 2 2 2 1 Syntaxin 6, N-terminal HrpB7 PF09486.5 gi|389846728|ref|YP_006348967.1| - 0.0025 17.7 9.8 0.0025 17.7 6.8 2.3 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) DUF4600 PF15372.1 gi|389846728|ref|YP_006348967.1| - 0.0026 17.9 23.6 0.26 11.5 11.6 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4600) TMP_2 PF06791.8 gi|389846728|ref|YP_006348967.1| - 0.0028 17.3 3.1 0.13 11.8 0.6 2.1 1 1 1 2 2 2 1 Prophage tail length tape measure protein DUF3584 PF12128.3 gi|389846728|ref|YP_006348967.1| - 0.003 14.9 30.3 0.0064 13.9 21.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) MCPsignal PF00015.16 gi|389846728|ref|YP_006348967.1| - 0.0032 17.0 8.8 0.0032 17.0 6.1 1.9 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_27 PF13514.1 gi|389846728|ref|YP_006348967.1| - 0.0034 15.1 22.1 0.0043 14.8 15.3 1.0 1 0 0 1 1 1 1 AAA domain DUF3138 PF11336.3 gi|389846728|ref|YP_006348967.1| - 0.0037 15.5 2.6 0.12 10.5 1.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3138) WXG100 PF06013.7 gi|389846728|ref|YP_006348967.1| - 0.0041 17.0 14.8 0.42 10.6 0.0 4.3 1 1 2 3 3 3 1 Proteins of 100 residues with WXG MAD PF05557.8 gi|389846728|ref|YP_006348967.1| - 0.0043 15.2 26.7 0.0068 14.5 18.5 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF948 PF06103.6 gi|389846728|ref|YP_006348967.1| - 0.0048 16.7 23.7 0.34 10.8 5.5 3.3 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) TarH PF02203.10 gi|389846728|ref|YP_006348967.1| - 0.0049 16.7 18.9 0.0054 16.5 4.5 2.3 1 1 1 2 2 2 1 Tar ligand binding domain homologue Halogen_Hydrol PF10112.4 gi|389846728|ref|YP_006348967.1| - 0.0051 16.2 11.9 1.2 8.4 8.3 2.7 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF972 PF06156.8 gi|389846728|ref|YP_006348967.1| - 0.0056 17.0 25.2 0.018 15.3 5.0 3.0 1 1 0 2 2 2 1 Protein of unknown function (DUF972) Baculo_PEP_C PF04513.7 gi|389846728|ref|YP_006348967.1| - 0.0059 16.4 22.7 39 4.0 15.7 2.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6 PF04111.7 gi|389846728|ref|YP_006348967.1| - 0.0061 15.6 33.1 0.0083 15.2 18.4 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 DUF2730 PF10805.3 gi|389846728|ref|YP_006348967.1| - 0.0067 16.1 16.3 0.12 12.1 3.0 3.2 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) FH2 PF02181.18 gi|389846728|ref|YP_006348967.1| - 0.0072 15.2 18.5 0.023 13.6 5.5 2.1 1 1 1 2 2 2 2 Formin Homology 2 Domain V-SNARE_C PF12352.3 gi|389846728|ref|YP_006348967.1| - 0.008 16.2 19.4 0.18 11.9 0.8 4.4 1 1 2 3 3 3 1 Snare region anchored in the vesicle membrane C-terminus Seryl_tRNA_N PF02403.17 gi|389846728|ref|YP_006348967.1| - 0.008 16.1 28.2 0.044 13.7 7.9 3.0 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Fez1 PF06818.10 gi|389846728|ref|YP_006348967.1| - 0.0082 16.1 25.1 0.014 15.4 9.5 1.9 1 1 1 2 2 2 2 Fez1 Biopterin_H PF00351.16 gi|389846728|ref|YP_006348967.1| - 0.0083 14.9 1.8 0.02 13.7 0.4 1.8 1 1 1 2 2 2 1 Biopterin-dependent aromatic amino acid hydroxylase DUF4446 PF14584.1 gi|389846728|ref|YP_006348967.1| - 0.0084 15.9 16.9 0.42 10.4 0.7 3.1 1 1 2 3 3 3 2 Protein of unknown function (DUF4446) NPV_P10 PF05531.7 gi|389846728|ref|YP_006348967.1| - 0.0088 16.2 26.5 24 5.2 2.6 4.1 1 1 1 2 2 1 0 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|389846728|ref|YP_006348967.1| - 0.009 15.7 8.9 0.034 13.8 2.9 2.3 1 1 1 2 2 2 1 Apolipoprotein O Tektin PF03148.9 gi|389846728|ref|YP_006348967.1| - 0.0095 14.5 26.8 0.085 11.3 9.3 2.5 1 1 1 2 2 2 1 Tektin family Prefoldin PF02996.12 gi|389846728|ref|YP_006348967.1| - 0.0099 15.5 28.1 0.74 9.4 1.8 4.4 1 1 4 5 5 5 0 Prefoldin subunit DUF4140 PF13600.1 gi|389846728|ref|YP_006348967.1| - 0.0099 16.3 24.9 0.3 11.5 3.2 3.6 1 1 1 2 2 1 1 N-terminal domain of unknown function (DUF4140) DUF812 PF05667.6 gi|389846728|ref|YP_006348967.1| - 0.01 14.3 27.2 0.2 10.1 9.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) ApoLp-III PF07464.6 gi|389846728|ref|YP_006348967.1| - 0.01 15.8 21.4 0.9 9.5 5.7 2.7 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) IFT57 PF10498.4 gi|389846728|ref|YP_006348967.1| - 0.011 14.4 26.7 0.023 13.4 11.8 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 SpaB_C PF14028.1 gi|389846728|ref|YP_006348967.1| - 0.011 15.2 1.7 0.11 12.0 1.2 1.9 1 1 0 1 1 1 0 SpaB C-terminal domain Bacillus_HBL PF05791.6 gi|389846728|ref|YP_006348967.1| - 0.012 15.0 23.3 0.13 11.6 8.2 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Snf7 PF03357.16 gi|389846728|ref|YP_006348967.1| - 0.012 15.0 25.5 0.016 14.5 17.7 1.2 1 0 0 1 1 1 0 Snf7 Cast PF10174.4 gi|389846728|ref|YP_006348967.1| - 0.012 13.7 33.5 0.023 12.7 23.3 1.3 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Fmp27_WPPW PF10359.4 gi|389846728|ref|YP_006348967.1| - 0.012 14.0 27.0 0.044 12.1 5.6 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.16 gi|389846728|ref|YP_006348967.1| - 0.012 15.5 29.1 0.22 11.4 3.3 4.8 1 1 4 5 5 5 0 bZIP transcription factor Uds1 PF15456.1 gi|389846728|ref|YP_006348967.1| - 0.014 15.4 24.8 0.12 12.3 12.7 2.6 1 1 1 2 2 2 0 Up-regulated During Septation DUF342 PF03961.8 gi|389846728|ref|YP_006348967.1| - 0.014 13.8 22.8 0.15 10.4 5.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Prp19 PF08606.6 gi|389846728|ref|YP_006348967.1| - 0.014 15.1 2.1 0.014 15.1 1.5 3.1 2 1 0 3 3 2 0 Prp19/Pso4-like Cortex-I_coil PF09304.5 gi|389846728|ref|YP_006348967.1| - 0.015 15.3 32.0 0.76 9.8 6.1 3.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil BicD PF09730.4 gi|389846728|ref|YP_006348967.1| - 0.015 13.7 23.5 0.02 13.2 16.3 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D FlaC_arch PF05377.6 gi|389846728|ref|YP_006348967.1| - 0.016 15.0 27.2 5.6 6.9 0.7 5.2 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) Peptidase_S46 PF10459.4 gi|389846728|ref|YP_006348967.1| - 0.016 13.6 11.7 0.02 13.3 8.1 1.1 1 0 0 1 1 1 0 Peptidase S46 HOOK PF05622.7 gi|389846728|ref|YP_006348967.1| - 0.018 12.8 33.0 0.036 11.8 16.2 2.0 1 1 1 2 2 2 0 HOOK protein DUF2051 PF09738.4 gi|389846728|ref|YP_006348967.1| - 0.021 14.1 30.0 0.032 13.5 8.4 2.2 1 1 1 2 2 2 0 Double stranded RNA binding protein (DUF2051) PMEI PF04043.10 gi|389846728|ref|YP_006348967.1| - 0.022 14.6 9.5 0.017 15.0 5.0 1.8 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor T2SM PF04612.7 gi|389846728|ref|YP_006348967.1| - 0.028 14.2 9.1 2.4 7.9 4.8 3.2 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M DUF2408 PF10303.4 gi|389846728|ref|YP_006348967.1| - 0.031 14.4 17.6 2.8 8.0 11.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) V_ATPase_I PF01496.14 gi|389846728|ref|YP_006348967.1| - 0.031 12.1 22.7 0.1 10.4 15.4 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Flagellin_C PF00700.16 gi|389846728|ref|YP_006348967.1| - 0.038 14.1 17.3 0.32 11.1 1.0 3.3 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region DUF724 PF05266.9 gi|389846728|ref|YP_006348967.1| - 0.039 13.5 20.8 0.098 12.2 5.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Hemerythrin PF01814.18 gi|389846728|ref|YP_006348967.1| - 0.039 14.1 9.2 2.8 8.1 6.4 2.7 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF1049 PF06305.6 gi|389846728|ref|YP_006348967.1| - 0.044 13.2 11.9 0.25 10.8 0.1 4.8 2 2 4 6 6 5 0 Protein of unknown function (DUF1049) Spc24 PF08286.6 gi|389846728|ref|YP_006348967.1| - 0.046 13.4 36.3 5.8 6.6 6.5 3.6 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Striatin PF08232.7 gi|389846728|ref|YP_006348967.1| - 0.047 13.9 24.8 0.075 13.3 2.6 2.1 1 1 1 2 2 2 0 Striatin family Ax_dynein_light PF10211.4 gi|389846728|ref|YP_006348967.1| - 0.05 13.4 28.4 0.083 12.7 1.6 3.5 1 1 3 4 4 4 0 Axonemal dynein light chain bZIP_2 PF07716.10 gi|389846728|ref|YP_006348967.1| - 0.056 13.2 27.4 0.16 11.7 0.5 4.9 3 1 2 5 5 4 0 Basic region leucine zipper ALIX_LYPXL_bnd PF13949.1 gi|389846728|ref|YP_006348967.1| - 0.057 12.3 29.3 0.05 12.5 14.5 2.0 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DivIVA PF05103.8 gi|389846728|ref|YP_006348967.1| - 0.06 13.3 27.3 0.8 9.7 2.1 2.9 1 1 1 2 2 2 0 DivIVA protein LPP PF04728.8 gi|389846728|ref|YP_006348967.1| - 0.061 13.1 16.1 0.14 11.9 0.0 4.2 2 1 3 5 5 5 0 Lipoprotein leucine-zipper KxDL PF10241.4 gi|389846728|ref|YP_006348967.1| - 0.063 13.1 20.5 1.8 8.5 1.6 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein Snapin_Pallidin PF14712.1 gi|389846728|ref|YP_006348967.1| - 0.073 13.3 25.4 0.46 10.8 5.6 3.1 1 1 1 2 2 2 0 Snapin/Pallidin DUF3552 PF12072.3 gi|389846728|ref|YP_006348967.1| - 0.074 12.2 35.5 0.32 10.1 7.7 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF2450 PF10475.4 gi|389846728|ref|YP_006348967.1| - 0.082 11.7 16.2 0.055 12.3 4.8 2.3 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) DegS PF05384.6 gi|389846728|ref|YP_006348967.1| - 0.092 11.9 20.3 0.41 9.8 2.8 2.8 1 1 1 2 2 2 0 Sensor protein DegS CALCOCO1 PF07888.6 gi|389846728|ref|YP_006348967.1| - 0.093 10.9 28.4 0.011 14.0 10.3 2.0 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF745 PF05335.8 gi|389846728|ref|YP_006348967.1| - 0.1 12.0 19.9 0.025 14.1 5.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF745) PilJ PF13675.1 gi|389846728|ref|YP_006348967.1| - 0.11 12.8 17.9 0.067 13.5 2.2 2.7 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term TMPIT PF07851.8 gi|389846728|ref|YP_006348967.1| - 0.12 11.4 20.3 0.3 10.1 5.7 2.1 1 1 1 2 2 2 0 TMPIT-like protein RTBV_P46 PF06216.6 gi|389846728|ref|YP_006348967.1| - 0.12 11.2 14.1 1.5 7.5 1.2 2.9 1 1 2 3 3 3 0 Rice tungro bacilliform virus P46 protein Metal_resist PF13801.1 gi|389846728|ref|YP_006348967.1| - 0.13 12.2 10.8 0.076 13.0 1.6 2.8 1 1 0 2 2 2 0 Heavy-metal resistance DUF2203 PF09969.4 gi|389846728|ref|YP_006348967.1| - 0.13 12.4 13.5 0.19 11.9 2.0 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Microtub_assoc PF07989.6 gi|389846728|ref|YP_006348967.1| - 0.14 11.9 25.7 0.3 10.9 3.6 3.3 2 1 1 3 3 3 0 Microtubule associated DUF4407 PF14362.1 gi|389846728|ref|YP_006348967.1| - 0.15 10.9 24.7 0.12 11.2 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Lebercilin PF15619.1 gi|389846728|ref|YP_006348967.1| - 0.15 11.4 32.1 0.39 10.1 14.1 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease RmuC PF02646.11 gi|389846728|ref|YP_006348967.1| - 0.16 10.7 21.3 0.46 9.2 2.7 2.8 1 1 3 4 4 4 0 RmuC family COG5 PF10392.4 gi|389846728|ref|YP_006348967.1| - 0.18 11.7 17.9 2.5 8.0 5.3 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF2231 PF09990.4 gi|389846728|ref|YP_006348967.1| - 0.2 12.0 0.4 0.27 11.5 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) FliD_C PF07195.7 gi|389846728|ref|YP_006348967.1| - 0.2 10.8 23.5 8.6 5.5 4.3 3.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Med4 PF10018.4 gi|389846728|ref|YP_006348967.1| - 0.21 10.9 30.4 0.056 12.8 1.7 3.7 1 1 3 4 4 4 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF3573 PF12097.3 gi|389846728|ref|YP_006348967.1| - 0.22 10.0 16.3 0.84 8.1 7.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3573) Sec8_exocyst PF04048.9 gi|389846728|ref|YP_006348967.1| - 0.24 11.0 21.5 3.1 7.4 9.4 3.4 1 1 2 3 3 2 0 Sec8 exocyst complex component specific domain Lipoprotein_7 PF01540.11 gi|389846728|ref|YP_006348967.1| - 0.25 10.3 16.0 0.79 8.7 11.1 1.7 1 1 0 1 1 1 0 Adhesin lipoprotein Allexi_40kDa PF05549.6 gi|389846728|ref|YP_006348967.1| - 0.27 10.4 19.3 0.062 12.5 3.1 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF641 PF04859.7 gi|389846728|ref|YP_006348967.1| - 0.3 10.8 19.3 0.48 10.1 2.8 2.8 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) TMCO5 PF14992.1 gi|389846728|ref|YP_006348967.1| - 0.36 9.9 30.6 1.8 7.6 21.2 1.8 1 1 0 1 1 1 0 TMCO5 family Sec2p PF06428.6 gi|389846728|ref|YP_006348967.1| - 0.4 10.5 27.6 0.3 10.9 3.9 3.5 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p Calici_MSP PF05752.6 gi|389846728|ref|YP_006348967.1| - 0.42 10.1 4.6 0.19 11.3 0.9 2.0 1 1 0 2 2 1 0 Calicivirus minor structural protein DUF4363 PF14276.1 gi|389846728|ref|YP_006348967.1| - 0.42 10.3 14.3 0.32 10.7 0.1 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4363) Fzo_mitofusin PF04799.8 gi|389846728|ref|YP_006348967.1| - 0.44 9.9 23.0 0.77 9.1 4.2 3.3 1 1 2 3 3 3 0 fzo-like conserved region YlqD PF11068.3 gi|389846728|ref|YP_006348967.1| - 0.44 10.5 25.6 5.4 7.0 7.8 2.8 1 1 1 2 2 2 0 YlqD protein Cluap1 PF10234.4 gi|389846728|ref|YP_006348967.1| - 0.46 9.6 25.9 1.7 7.8 4.9 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 Med2 PF11214.3 gi|389846728|ref|YP_006348967.1| - 0.47 10.5 23.3 1.8 8.6 5.5 3.2 1 1 2 3 3 3 0 Mediator complex subunit 2 CENP-Q PF13094.1 gi|389846728|ref|YP_006348967.1| - 0.49 10.4 37.4 1.8 8.5 2.8 2.9 1 1 2 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit BMFP PF04380.8 gi|389846728|ref|YP_006348967.1| - 0.53 10.4 18.5 0.4 10.8 3.5 4.0 2 2 2 4 4 3 0 Membrane fusogenic activity HAUS-augmin3 PF14932.1 gi|389846728|ref|YP_006348967.1| - 0.54 9.3 27.4 0.33 10.1 9.4 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 MT PF12777.2 gi|389846728|ref|YP_006348967.1| - 0.57 8.8 12.0 1.7 7.2 0.8 2.9 1 1 2 3 3 3 0 Microtubule-binding stalk of dynein motor Med9 PF07544.8 gi|389846728|ref|YP_006348967.1| - 0.58 9.9 23.9 4.8 6.9 5.2 3.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 CDC37_N PF03234.9 gi|389846728|ref|YP_006348967.1| - 0.58 10.4 23.0 1.1 9.5 15.9 1.5 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Sulfatase_C PF14707.1 gi|389846728|ref|YP_006348967.1| - 0.6 10.4 8.2 1 9.6 0.2 2.7 1 1 2 3 3 3 0 C-terminal region of aryl-sulfatase Phage_GP20 PF06810.6 gi|389846728|ref|YP_006348967.1| - 0.6 9.5 36.4 6.6 6.1 15.2 3.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 AATF-Che1 PF13339.1 gi|389846728|ref|YP_006348967.1| - 0.61 10.2 24.2 3.4e+03 -1.9 16.7 2.6 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor Jnk-SapK_ap_N PF09744.4 gi|389846728|ref|YP_006348967.1| - 0.62 10.0 28.4 0.19 11.7 6.3 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 GrpE PF01025.14 gi|389846728|ref|YP_006348967.1| - 0.64 9.5 28.1 0.65 9.5 4.6 3.1 1 1 2 3 3 3 0 GrpE DUF1978 PF09321.5 gi|389846728|ref|YP_006348967.1| - 0.64 9.4 25.1 0.22 10.9 3.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) Phage_GPO PF05929.6 gi|389846728|ref|YP_006348967.1| - 0.75 8.9 24.6 2.4 7.3 7.1 2.8 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Lectin_N PF03954.9 gi|389846728|ref|YP_006348967.1| - 0.76 9.1 28.6 0.61 9.4 5.5 3.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain GP41 PF00517.12 gi|389846728|ref|YP_006348967.1| - 0.76 9.2 16.7 0.51 9.8 0.2 3.1 1 1 2 3 3 3 0 Retroviral envelope protein Erp_C PF06780.6 gi|389846728|ref|YP_006348967.1| - 0.77 9.6 25.9 1.4 8.7 6.7 2.4 1 1 1 2 2 2 0 Erp protein C-terminus EAP30 PF04157.11 gi|389846728|ref|YP_006348967.1| - 0.81 8.7 25.4 0.046 12.8 2.5 3.1 1 1 2 3 3 3 0 EAP30/Vps36 family PEARLI-4 PF05278.7 gi|389846728|ref|YP_006348967.1| - 0.86 8.9 14.2 0.18 11.1 2.6 2.6 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) HSBP1 PF06825.7 gi|389846728|ref|YP_006348967.1| - 0.91 9.1 14.3 0.37 10.3 1.0 3.0 3 0 0 3 3 2 0 Heat shock factor binding protein 1 UPF0118 PF01594.11 gi|389846728|ref|YP_006348967.1| - 0.93 8.4 3.1 2.3 7.1 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF20 Cep57_CLD_2 PF14197.1 gi|389846728|ref|YP_006348967.1| - 0.96 9.4 42.1 3 7.8 9.1 3.5 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 DUF1515 PF07439.6 gi|389846728|ref|YP_006348967.1| - 0.97 9.2 14.3 2.8 7.7 4.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) NAD_binding_6 PF08030.7 gi|389846728|ref|YP_006348967.1| - 0.98 9.3 6.0 1.5 8.6 4.1 1.4 1 1 0 1 1 1 0 Ferric reductase NAD binding domain Syntaxin PF00804.20 gi|389846728|ref|YP_006348967.1| - 1 9.5 31.0 0.2 11.8 6.6 2.2 1 1 1 2 2 2 0 Syntaxin End3 PF12761.2 gi|389846728|ref|YP_006348967.1| - 1 8.9 27.1 0.83 9.2 7.5 2.8 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 Nup54 PF13874.1 gi|389846728|ref|YP_006348967.1| - 1 9.0 20.7 0.66 9.6 7.5 2.6 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Exonuc_VII_L PF02601.10 gi|389846728|ref|YP_006348967.1| - 1 8.4 24.1 4.1 6.5 16.8 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit Vps51 PF08700.6 gi|389846728|ref|YP_006348967.1| - 1 9.2 19.5 9.7 6.1 5.7 3.8 1 1 2 3 3 3 0 Vps51/Vps67 TelA PF05816.6 gi|389846728|ref|YP_006348967.1| - 1.2 7.8 22.4 6.2 5.4 15.5 1.9 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) FliD_N PF02465.13 gi|389846728|ref|YP_006348967.1| - 1.2 9.5 21.7 2.5 8.5 0.9 3.4 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus LIF_OSM PF01291.12 gi|389846728|ref|YP_006348967.1| - 1.2 9.0 7.4 27 4.6 0.8 2.9 1 1 2 3 3 3 0 LIF / OSM family DASH_Spc34 PF08657.5 gi|389846728|ref|YP_006348967.1| - 1.2 8.7 25.6 29 4.1 6.0 2.8 1 1 1 2 2 2 0 DASH complex subunit Spc34 CASP_C PF08172.7 gi|389846728|ref|YP_006348967.1| - 1.2 8.0 26.3 3.6 6.5 17.8 2.2 1 1 0 1 1 1 0 CASP C terminal THOC7 PF05615.8 gi|389846728|ref|YP_006348967.1| - 1.3 9.3 27.5 12 6.1 8.6 2.9 1 1 1 2 2 2 0 Tho complex subunit 7 HR1 PF02185.11 gi|389846728|ref|YP_006348967.1| - 1.4 8.6 27.3 2.1 8.1 3.5 3.4 1 1 2 3 3 3 0 Hr1 repeat DUF2422 PF10337.4 gi|389846728|ref|YP_006348967.1| - 1.4 7.5 6.4 2.1 7.0 4.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) DUF2333 PF10095.4 gi|389846728|ref|YP_006348967.1| - 1.4 7.4 9.2 2.3 6.7 6.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) DUF2353 PF09789.4 gi|389846728|ref|YP_006348967.1| - 1.5 7.9 27.0 4.6 6.4 13.4 2.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) OmpH PF03938.9 gi|389846728|ref|YP_006348967.1| - 1.5 8.7 27.5 3.8 7.4 3.4 2.5 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) GLE1 PF07817.8 gi|389846728|ref|YP_006348967.1| - 1.6 7.5 14.7 3.2 6.6 4.7 2.4 1 1 2 3 3 3 0 GLE1-like protein BCAS2 PF05700.6 gi|389846728|ref|YP_006348967.1| - 1.7 8.0 23.6 0.53 9.6 7.0 2.4 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) NEP PF10167.4 gi|389846728|ref|YP_006348967.1| - 1.8 8.2 10.3 2.4 7.8 0.1 3.1 1 1 1 2 2 2 0 Uncharacterised conserved protein TMF_TATA_bd PF12325.3 gi|389846728|ref|YP_006348967.1| - 1.8 8.3 34.0 2.6 7.7 15.2 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding LXG PF04740.7 gi|389846728|ref|YP_006348967.1| - 2 8.1 24.5 1.8e+02 1.7 16.9 2.7 1 1 0 1 1 1 0 LXG domain of WXG superfamily PHTB1_C PF14728.1 gi|389846728|ref|YP_006348967.1| - 2.1 7.0 17.7 0.62 8.7 2.0 2.0 1 1 1 2 2 2 0 PTHB1 C-terminus DUF1843 PF08898.5 gi|389846728|ref|YP_006348967.1| - 2.2 8.3 16.4 11 6.1 1.1 3.9 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) MitMem_reg PF13012.1 gi|389846728|ref|YP_006348967.1| - 2.2 8.4 17.6 0.48 10.5 4.5 2.4 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function DUF1043 PF06295.7 gi|389846728|ref|YP_006348967.1| - 2.2 7.9 20.0 5.2 6.7 0.9 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1043) HAP1_N PF04849.8 gi|389846728|ref|YP_006348967.1| - 2.3 7.1 30.2 8.4 5.2 21.0 1.7 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DUF3829 PF12889.2 gi|389846728|ref|YP_006348967.1| - 2.5 7.2 18.5 28 3.7 12.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) Flagellin_N PF00669.15 gi|389846728|ref|YP_006348967.1| - 2.5 7.8 19.0 0.48 10.2 5.8 2.6 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region DUF883 PF05957.8 gi|389846728|ref|YP_006348967.1| - 2.6 8.4 18.4 1.6 9.1 2.2 3.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) YvrJ PF12841.2 gi|389846728|ref|YP_006348967.1| - 2.7 7.3 5.4 2.6 7.3 0.2 3.1 2 1 1 4 4 2 0 YvrJ protein family DUF2681 PF10883.3 gi|389846728|ref|YP_006348967.1| - 2.8 8.1 14.7 0.25 11.5 0.9 3.0 1 1 2 3 3 2 0 Protein of unknown function (DUF2681) Streptin-Immun PF11083.3 gi|389846728|ref|YP_006348967.1| - 2.9 7.9 16.4 11 6.0 2.8 3.1 1 1 2 3 3 3 0 Lantibiotic streptin immunity protein UPF0449 PF15136.1 gi|389846728|ref|YP_006348967.1| - 3.1 8.0 23.6 29 4.9 6.0 4.3 1 1 2 3 3 2 0 Uncharacterised protein family UPF0449 MtrB PF05440.7 gi|389846728|ref|YP_006348967.1| - 3.1 7.9 7.7 61 3.7 3.2 3.3 1 1 2 3 3 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Vps53_N PF04100.7 gi|389846728|ref|YP_006348967.1| - 3.2 6.4 20.6 1.9 7.2 5.6 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal Bap31 PF05529.7 gi|389846728|ref|YP_006348967.1| - 3.2 7.1 25.3 2 7.8 5.0 2.6 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Ly49 PF08391.5 gi|389846728|ref|YP_006348967.1| - 3.2 7.8 16.0 0.13 12.3 3.0 2.2 1 1 1 2 2 1 0 Ly49-like protein, N-terminal region Sec34 PF04136.10 gi|389846728|ref|YP_006348967.1| - 3.4 7.3 16.8 11 5.6 2.0 2.6 1 1 1 2 2 2 0 Sec34-like family YPEB PF14620.1 gi|389846728|ref|YP_006348967.1| - 3.4 6.5 18.9 0.25 10.2 4.1 2.3 1 1 1 2 2 2 0 YpeB sporulation APG17 PF04108.7 gi|389846728|ref|YP_006348967.1| - 3.4 6.3 23.7 1.5 7.5 8.9 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 Cauli_AT PF03233.8 gi|389846728|ref|YP_006348967.1| - 3.5 7.2 19.0 1.4 8.6 6.3 2.2 1 1 1 2 2 2 0 Aphid transmission protein DUF3847 PF12958.2 gi|389846728|ref|YP_006348967.1| - 3.6 7.3 26.6 3.9 7.2 1.9 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF3847) HALZ PF02183.13 gi|389846728|ref|YP_006348967.1| - 3.8 7.3 22.6 1.7 8.4 0.7 3.9 2 2 2 4 4 4 0 Homeobox associated leucine zipper TBCA PF02970.11 gi|389846728|ref|YP_006348967.1| - 4.4 7.4 23.1 4.8 7.3 4.8 3.0 1 1 2 3 3 3 0 Tubulin binding cofactor A Dzip-like_N PF13815.1 gi|389846728|ref|YP_006348967.1| - 4.4 7.1 25.4 0.48 10.2 4.0 3.3 1 1 2 3 3 3 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal FUSC PF04632.7 gi|389846728|ref|YP_006348967.1| - 4.8 5.4 13.2 1.6 7.0 3.6 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein family TraC PF07820.7 gi|389846728|ref|YP_006348967.1| - 5.6 7.2 12.1 0.9 9.7 0.4 3.6 3 1 0 3 3 3 0 TraC-like protein FimP PF09766.4 gi|389846728|ref|YP_006348967.1| - 5.7 5.9 23.2 8.4 5.3 15.9 1.4 1 1 0 1 1 1 0 Fms-interacting protein Lyase_8_N PF08124.6 gi|389846728|ref|YP_006348967.1| - 5.8 5.6 10.1 9.2 5.0 7.0 1.4 1 1 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain DUF3508 PF12018.3 gi|389846728|ref|YP_006348967.1| - 6.1 5.7 12.2 6.4 5.6 4.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3508) HisKA_3 PF07730.8 gi|389846728|ref|YP_006348967.1| - 6.1 7.2 13.5 7 7.0 1.1 3.5 1 1 1 2 2 2 0 Histidine kinase OEP PF02321.13 gi|389846728|ref|YP_006348967.1| - 6.3 6.3 24.5 13 5.2 7.7 2.7 1 1 1 2 2 2 0 Outer membrane efflux protein STAT_alpha PF01017.15 gi|389846728|ref|YP_006348967.1| - 6.5 6.4 21.0 0.3 10.7 1.7 2.9 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF489 PF04356.7 gi|389846728|ref|YP_006348967.1| - 6.8 6.2 10.6 8.9 5.8 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) bZIP_Maf PF03131.12 gi|389846728|ref|YP_006348967.1| - 6.9 7.0 27.0 3.5 7.9 2.7 3.6 1 1 2 3 3 3 0 bZIP Maf transcription factor Tweety PF04906.8 gi|389846728|ref|YP_006348967.1| - 6.9 4.9 11.5 5.5 5.3 2.4 2.2 1 1 1 2 2 2 0 Tweety Prefoldin_3 PF13758.1 gi|389846728|ref|YP_006348967.1| - 7.3 6.4 19.2 5.8 6.7 1.2 3.0 1 1 1 2 2 2 0 Prefoldin subunit Sec20 PF03908.8 gi|389846728|ref|YP_006348967.1| - 7.5 6.3 17.2 2.7 7.7 1.4 3.0 1 1 1 2 2 2 0 Sec20 Adeno_PIX PF03955.9 gi|389846728|ref|YP_006348967.1| - 8.3 6.9 17.3 1.5e+04 -5.9 12.0 3.2 1 1 0 1 1 0 0 Adenovirus hexon-associated protein (IX) Kinetocho_Slk19 PF12709.2 gi|389846728|ref|YP_006348967.1| - 8.5 6.5 28.6 6.7 6.8 1.9 4.6 1 1 3 4 4 3 0 Central kinetochore-associated MutS_IV PF05190.13 gi|389846728|ref|YP_006348967.1| - 9.1 6.5 20.4 2.6 8.2 1.5 4.2 1 1 2 3 3 3 0 MutS family domain IV Sipho_Gp157 PF05565.6 gi|389846728|ref|YP_006348967.1| - 9.2 5.8 18.7 5 6.6 7.3 2.5 1 1 2 3 3 3 0 Siphovirus Gp157 Macoilin PF09726.4 gi|389846728|ref|YP_006348967.1| - 9.7 4.3 27.0 20 3.2 18.8 1.3 1 1 0 1 1 1 0 Transmembrane protein FemAB PF02388.11 gi|389846728|ref|YP_006348967.1| - 9.7 4.7 22.6 1.5e+04 -7.5 15.7 2.4 1 1 0 1 1 0 0 FemAB family HAUS6_N PF14661.1 gi|389846728|ref|YP_006348967.1| - 9.7 5.4 21.2 8.5 5.6 2.8 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Golgin_A5 PF09787.4 gi|389846728|ref|YP_006348967.1| - 9.9 4.5 27.3 1.1 7.7 9.8 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 DUF3373 PF11853.3 gi|389846728|ref|YP_006348967.1| - 9.9 4.5 21.9 2.6 6.4 0.7 3.3 1 1 1 2 2 1 0 Protein of unknown function (DUF3373) XkdW PF09636.5 gi|389846728|ref|YP_006348967.1| - 9.9 6.0 13.1 1.9 8.3 2.7 2.6 1 1 0 2 2 2 0 XkdW protein VWA_2 PF13519.1 gi|389846729|ref|YP_006348968.1| - 6.9e-28 97.8 6.2 5.9e-25 88.3 0.0 3.6 3 1 0 4 4 4 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|389846729|ref|YP_006348968.1| - 7.5e-16 58.2 0.0 1.1e-14 54.4 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|389846729|ref|YP_006348968.1| - 3.9e-15 56.0 0.1 5.5e-13 49.0 0.0 2.8 3 0 0 3 3 3 1 von Willebrand factor type A domain DUF1355 PF07090.6 gi|389846729|ref|YP_006348968.1| - 4.5e-09 35.9 0.0 9.4e-09 34.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA_CoxE PF05762.9 gi|389846729|ref|YP_006348968.1| - 1.9e-08 33.7 0.0 2.8e-06 26.6 0.0 3.0 3 0 0 3 3 3 1 VWA domain containing CoxE-like protein BatA PF07584.6 gi|389846729|ref|YP_006348968.1| - 3.5 7.8 10.8 2.6 8.2 5.1 2.3 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal BatA PF07584.6 gi|389846730|ref|YP_006348969.1| - 1.7e-12 47.3 7.6 1.7e-12 47.3 5.3 2.1 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|389846730|ref|YP_006348969.1| - 9.5e-07 29.0 7.5 1.7e-06 28.2 5.2 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain Na_H_antiporter PF03553.9 gi|389846731|ref|YP_006348970.1| - 6.2e-57 192.9 43.4 9.3e-55 185.7 17.6 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family CoatB PF10389.4 gi|389846731|ref|YP_006348970.1| - 0.021 14.6 5.2 4.4 7.2 0.0 3.3 2 0 0 2 2 2 0 Bacteriophage coat protein B bPH_2 PF03703.9 gi|389846733|ref|YP_006348972.1| - 1.2e-12 47.6 0.1 1.8e-12 47.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.9 gi|389846734|ref|YP_006348973.1| - 3.4e-14 52.6 0.1 6.7e-14 51.6 0.0 1.5 2 0 0 2 2 2 1 Bacterial PH domain AsnC_trans_reg PF01037.16 gi|389846735|ref|YP_006348974.1| - 1.9e-16 59.5 1.4 2e-16 59.4 0.2 1.6 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|389846735|ref|YP_006348974.1| - 3.4e-07 29.5 0.0 5.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389846735|ref|YP_006348974.1| - 1e-05 24.9 0.8 1e-05 24.9 0.6 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|389846735|ref|YP_006348974.1| - 0.00052 19.6 0.1 0.00099 18.7 0.1 1.4 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|389846735|ref|YP_006348974.1| - 0.0041 16.7 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator RPA_C PF08784.6 gi|389846735|ref|YP_006348974.1| - 0.0059 16.9 0.0 0.016 15.6 0.0 1.6 2 0 0 2 2 2 1 Replication protein A C terminal MarR PF01047.17 gi|389846735|ref|YP_006348974.1| - 0.0099 15.5 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389846735|ref|YP_006348974.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|389846735|ref|YP_006348974.1| - 0.021 15.1 0.1 0.063 13.6 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF3562 PF12085.3 gi|389846735|ref|YP_006348974.1| - 0.034 13.9 0.3 0.13 12.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) GntR PF00392.16 gi|389846735|ref|YP_006348974.1| - 0.048 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|389846735|ref|YP_006348974.1| - 0.068 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|389846735|ref|YP_006348974.1| - 0.096 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|389846736|ref|YP_006348975.1| - 2.8e-72 243.6 0.0 3.1e-72 243.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|389846736|ref|YP_006348975.1| - 4.2e-07 29.4 0.0 6.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|389846736|ref|YP_006348975.1| - 0.00032 19.5 0.0 0.00057 18.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|389846736|ref|YP_006348975.1| - 0.0078 15.2 0.1 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Tox-HNH-HHH PF15637.1 gi|389846736|ref|YP_006348975.1| - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif Usp PF00582.21 gi|389846737|ref|YP_006348976.1| - 5.8e-31 107.5 1.2 6.8e-31 107.3 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Herpes_ICP4_N PF03584.10 gi|389846737|ref|YP_006348976.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein N-terminal region Pterin_bind PF00809.17 gi|389846737|ref|YP_006348976.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.5 1 1 1 2 2 2 0 Pterin binding enzyme HalX PF08663.5 gi|389846740|ref|YP_006348979.1| - 2.6e-20 72.1 5.7 2.6e-20 72.1 3.9 2.2 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|389846740|ref|YP_006348979.1| - 1.1e-18 67.2 0.1 2e-18 66.4 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain MtrG PF04210.8 gi|389846740|ref|YP_006348979.1| - 0.16 11.6 2.3 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF834 PF05754.9 gi|389846740|ref|YP_006348979.1| - 0.16 11.7 1.6 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF834) NUDE_C PF04880.8 gi|389846740|ref|YP_006348979.1| - 0.66 10.3 5.8 0.99 9.7 4.0 1.2 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region Regulator_TrmB PF11495.3 gi|662859429|ref|YP_006348980.2| - 1.1e-64 217.6 0.1 1.4e-64 217.2 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|662859429|ref|YP_006348980.2| - 1.9e-14 53.1 0.0 3.3e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|662859429|ref|YP_006348980.2| - 0.0012 18.5 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|662859429|ref|YP_006348980.2| - 0.0022 17.6 0.1 0.0061 16.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|662859429|ref|YP_006348980.2| - 0.0052 16.1 0.1 0.055 12.8 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|662859429|ref|YP_006348980.2| - 0.013 15.0 0.0 0.049 13.2 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|662859429|ref|YP_006348980.2| - 0.014 15.1 0.1 0.057 13.2 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|662859429|ref|YP_006348980.2| - 0.046 13.7 0.0 0.2 11.7 0.0 2.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain MarR PF01047.17 gi|662859429|ref|YP_006348980.2| - 0.083 12.6 0.0 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 MarR family adh_short PF00106.20 gi|389846742|ref|YP_006348981.1| - 1.8e-41 141.8 0.9 2.4e-41 141.4 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389846742|ref|YP_006348981.1| - 8.2e-30 104.3 0.0 9.4e-30 104.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389846742|ref|YP_006348981.1| - 6.3e-23 81.3 0.3 8.5e-23 80.9 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389846742|ref|YP_006348981.1| - 0.00043 19.7 0.1 0.0012 18.3 0.1 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|389846742|ref|YP_006348981.1| - 0.055 12.5 0.6 0.61 9.1 0.0 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHH_5 PF14520.1 gi|389846742|ref|YP_006348981.1| - 0.088 12.9 0.0 1.2 9.3 0.0 2.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain IMPDH PF00478.20 gi|389846743|ref|YP_006348982.1| - 7.2e-133 442.8 6.7 8.2e-133 442.6 4.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|389846743|ref|YP_006348982.1| - 2.8e-25 87.8 7.0 4.4e-14 52.0 0.8 2.9 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|389846743|ref|YP_006348982.1| - 5.7e-13 48.7 4.3 6.2e-07 28.8 1.2 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|389846743|ref|YP_006348982.1| - 1.4e-10 40.5 3.0 2.5e-10 39.7 2.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|389846743|ref|YP_006348982.1| - 1.5e-05 24.3 2.2 3.4e-05 23.2 1.5 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|389846743|ref|YP_006348982.1| - 1.9e-05 23.7 1.5 3.2e-05 23.0 0.7 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|389846743|ref|YP_006348982.1| - 2.5e-05 23.4 5.1 4.9e-05 22.5 0.6 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.12 gi|389846743|ref|YP_006348982.1| - 9.7e-05 21.4 1.8 0.0002 20.4 1.3 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase Dus PF01207.12 gi|389846743|ref|YP_006348982.1| - 0.0008 18.3 1.4 0.00088 18.1 0.1 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.1 gi|389846743|ref|YP_006348982.1| - 0.0064 15.7 4.6 0.056 12.6 0.1 3.1 3 0 0 3 3 3 1 Phosphoenolpyruvate phosphomutase PcrB PF01884.12 gi|389846743|ref|YP_006348982.1| - 0.012 14.8 0.5 0.012 14.8 0.3 3.1 3 0 0 3 3 3 0 PcrB family Methyltransf_24 PF13578.1 gi|389846743|ref|YP_006348982.1| - 0.096 13.5 0.3 0.22 12.3 0.2 1.6 1 0 0 1 1 1 0 Methyltransferase domain UPF0047 PF01894.12 gi|389846746|ref|YP_006348985.1| - 1.4e-32 111.9 0.0 1.8e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 UPF1_Zn_bind PF09416.5 gi|662859431|ref|YP_006348986.2| - 0.0077 15.8 0.0 0.0077 15.8 0.0 1.2 1 0 0 1 1 1 1 RNA helicase (UPF2 interacting domain) Elf1 PF05129.8 gi|662859431|ref|YP_006348986.2| - 0.012 15.2 0.4 0.021 14.5 0.3 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-Mss51 PF13824.1 gi|662859431|ref|YP_006348986.2| - 0.013 15.3 1.0 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|662859431|ref|YP_006348986.2| - 0.018 14.8 0.7 0.031 14.0 0.5 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|662859431|ref|YP_006348986.2| - 0.026 14.4 2.0 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain C1_3 PF07649.7 gi|662859431|ref|YP_006348986.2| - 0.051 13.6 0.6 2.9 8.0 0.1 2.1 2 0 0 2 2 2 0 C1-like domain zf-C2H2 PF00096.21 gi|662859431|ref|YP_006348986.2| - 0.069 13.5 1.4 4.9 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|662859431|ref|YP_006348986.2| - 0.073 12.3 0.4 0.55 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|662859431|ref|YP_006348986.2| - 0.095 12.5 3.5 2.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|662859431|ref|YP_006348986.2| - 0.13 12.1 0.8 0.24 11.2 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|662859431|ref|YP_006348986.2| - 0.29 11.5 1.3 7.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|662859431|ref|YP_006348986.2| - 0.36 10.5 2.4 1.5 8.5 1.8 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|662859431|ref|YP_006348986.2| - 7.8 6.7 7.4 1.6 8.9 0.3 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Dam PF05869.6 gi|389846750|ref|YP_006348989.1| - 1.2e-11 44.3 0.0 1.4e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) HTH_AsnC-type PF13404.1 gi|389846751|ref|YP_006348990.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Integrase_1 PF12835.2 gi|389846754|ref|YP_006348993.1| - 3.7e-06 26.8 0.0 5.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Integrase Phage_integrase PF00589.17 gi|389846754|ref|YP_006348993.1| - 0.00041 20.0 0.0 0.00075 19.2 0.0 1.4 1 1 0 1 1 1 1 Phage integrase family DUF1148 PF06618.6 gi|389846758|ref|YP_006348997.1| - 0.017 15.0 0.2 0.033 14.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1148) Methyltransf_11 PF08241.7 gi|389846759|ref|YP_006348998.1| - 2.6e-07 31.0 0.0 5.5e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846759|ref|YP_006348998.1| - 2.7e-07 30.4 0.0 3.4e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846759|ref|YP_006348998.1| - 0.0001 21.9 0.0 0.00015 21.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846759|ref|YP_006348998.1| - 0.0071 16.7 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846759|ref|YP_006348998.1| - 0.085 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Zot PF05707.7 gi|389846760|ref|YP_006348999.1| - 8.5e-07 28.6 0.1 7.1e-06 25.6 0.0 2.0 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|389846760|ref|YP_006348999.1| - 0.0093 15.4 0.2 9 5.6 0.0 3.0 2 1 0 3 3 3 2 AAA-like domain tRNA-synt_1b PF00579.20 gi|389846760|ref|YP_006348999.1| - 0.023 13.8 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) Sigma54_activ_2 PF14532.1 gi|389846760|ref|YP_006348999.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|389846760|ref|YP_006348999.1| - 0.098 12.3 0.0 1.2 8.8 0.0 2.3 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|389846760|ref|YP_006348999.1| - 0.12 11.7 0.1 0.66 9.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain CDC48_N PF02359.13 gi|389846762|ref|YP_006349001.1| - 0.11 12.4 0.0 4.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain DUF1206 PF06724.6 gi|389846763|ref|YP_006349002.1| - 0.0046 16.6 3.6 0.012 15.3 2.4 1.8 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1206) Yip1 PF04893.12 gi|389846763|ref|YP_006349002.1| - 0.068 12.6 3.1 0.089 12.2 2.1 1.2 1 0 0 1 1 1 0 Yip1 domain DUF3040 PF11239.3 gi|389846763|ref|YP_006349002.1| - 0.37 10.8 3.5 5.6 7.0 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) TrbC PF04956.8 gi|389846763|ref|YP_006349002.1| - 2.2 8.3 7.2 3.4 7.7 4.1 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family Claudin_2 PF13903.1 gi|389846763|ref|YP_006349002.1| - 6 6.5 6.7 16 5.1 1.5 2.2 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF2460 PF09343.5 gi|389846764|ref|YP_006349003.1| - 0.014 14.7 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) CBM_X2 PF03442.9 gi|389846764|ref|YP_006349003.1| - 0.043 13.6 1.3 0.12 12.2 0.3 2.0 1 1 1 2 2 2 0 Carbohydrate binding domain X2 Cytomega_UL20A PF05984.7 gi|389846764|ref|YP_006349003.1| - 0.52 10.5 3.2 1.3 9.2 0.7 2.3 1 1 1 2 2 2 0 Cytomegalovirus UL20A protein DUF2613 PF11021.3 gi|389846764|ref|YP_006349003.1| - 0.6 9.8 3.2 1.6 8.5 2.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2613) Ion_trans PF00520.26 gi|389846768|ref|YP_006349007.1| - 0.09 12.0 1.4 0.14 11.3 0.2 1.7 2 0 0 2 2 2 0 Ion transport protein Yip1 PF04893.12 gi|389846768|ref|YP_006349007.1| - 0.36 10.3 5.9 0.44 10.0 4.1 1.1 1 0 0 1 1 1 0 Yip1 domain DUF805 PF05656.9 gi|389846768|ref|YP_006349007.1| - 3.9 7.3 8.0 0.41 10.4 0.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF805) CBM_4_9 PF02018.12 gi|389846771|ref|YP_006349010.1| - 0.0019 18.1 0.4 0.0037 17.2 0.3 1.5 1 0 0 1 1 1 1 Carbohydrate binding domain Big_3_4 PF13754.1 gi|389846772|ref|YP_006349011.1| - 5.7e-06 26.5 5.5 5.7e-06 26.5 3.8 6.4 6 1 1 7 7 7 1 Bacterial Ig-like domain (group 3) ATP-grasp_4 PF13535.1 gi|389846772|ref|YP_006349011.1| - 0.3 10.7 0.8 13 5.5 0.1 2.6 3 0 0 3 3 3 0 ATP-grasp domain DUF2678 PF10856.3 gi|389846773|ref|YP_006349012.1| - 2.6 7.8 4.7 1.5 8.6 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2678) DUF3267 PF11667.3 gi|389846776|ref|YP_006349015.1| - 0.014 15.5 0.2 0.019 15.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3267) RseC_MucC PF04246.7 gi|389846776|ref|YP_006349015.1| - 0.043 13.3 2.4 0.051 13.1 1.7 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Glyco_hydro_38 PF01074.17 gi|389846777|ref|YP_006349016.1| - 0.076 12.2 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 N-terminal domain PQQ_3 PF13570.1 gi|389846778|ref|YP_006349017.1| - 1.1e-56 187.6 28.2 4.7e-10 39.3 1.1 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|389846778|ref|YP_006349017.1| - 3.3e-53 180.6 17.9 2.9e-24 85.8 3.2 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|389846778|ref|YP_006349017.1| - 2.1e-33 112.1 12.3 8.4e-10 37.6 0.3 8.2 8 0 0 8 8 8 7 PQQ enzyme repeat AAA_22 PF13401.1 gi|389846779|ref|YP_006349018.1| - 2.3e-10 40.7 0.0 9.3e-10 38.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389846779|ref|YP_006349018.1| - 1.1e-07 32.0 3.6 1.7e-06 28.1 0.0 2.8 2 2 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.7 gi|389846779|ref|YP_006349018.1| - 4.5e-06 25.8 1.3 1.6e-05 24.0 0.9 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|389846779|ref|YP_006349018.1| - 9.4e-06 26.4 1.2 3e-05 24.8 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389846779|ref|YP_006349018.1| - 2e-05 24.7 0.0 4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|389846779|ref|YP_006349018.1| - 0.00022 21.0 0.1 0.0051 16.5 0.1 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|389846779|ref|YP_006349018.1| - 0.00025 21.3 0.0 0.00066 19.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|389846779|ref|YP_006349018.1| - 0.00035 20.8 0.0 0.001 19.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|389846779|ref|YP_006349018.1| - 0.00076 18.9 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|389846779|ref|YP_006349018.1| - 0.00086 19.2 0.0 0.0019 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|389846779|ref|YP_006349018.1| - 0.00097 18.8 0.4 0.0028 17.3 0.3 1.9 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|389846779|ref|YP_006349018.1| - 0.001 18.7 0.7 0.0048 16.6 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain NACHT PF05729.7 gi|389846779|ref|YP_006349018.1| - 0.0017 18.0 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|389846779|ref|YP_006349018.1| - 0.0038 16.9 0.0 0.013 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|389846779|ref|YP_006349018.1| - 0.0049 16.7 0.3 0.022 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain HemY_N PF07219.8 gi|389846779|ref|YP_006349018.1| - 0.005 16.3 0.5 0.01 15.3 0.3 1.4 1 0 0 1 1 1 1 HemY protein N-terminus AAA_30 PF13604.1 gi|389846779|ref|YP_006349018.1| - 0.0053 16.3 0.0 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|389846779|ref|YP_006349018.1| - 0.0061 16.9 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|389846779|ref|YP_006349018.1| - 0.0066 15.2 0.1 0.097 11.3 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus DEAD PF00270.24 gi|389846779|ref|YP_006349018.1| - 0.01 15.3 0.2 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|389846779|ref|YP_006349018.1| - 0.014 14.2 0.0 0.032 13.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|389846779|ref|YP_006349018.1| - 0.015 14.3 0.0 0.02 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.15 gi|389846779|ref|YP_006349018.1| - 0.016 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Sigma54_activat PF00158.21 gi|389846779|ref|YP_006349018.1| - 0.017 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|389846779|ref|YP_006349018.1| - 0.017 14.5 0.0 0.083 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|389846779|ref|YP_006349018.1| - 0.024 14.0 0.3 0.057 12.8 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|389846779|ref|YP_006349018.1| - 0.028 14.6 0.0 0.073 13.2 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|389846779|ref|YP_006349018.1| - 0.028 14.3 0.1 0.067 13.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|389846779|ref|YP_006349018.1| - 0.035 13.6 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|389846779|ref|YP_006349018.1| - 0.047 12.8 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|389846779|ref|YP_006349018.1| - 0.057 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|389846779|ref|YP_006349018.1| - 0.059 13.0 0.1 3.7 7.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein DUF815 PF05673.8 gi|389846779|ref|YP_006349018.1| - 0.06 12.2 0.1 0.29 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|389846779|ref|YP_006349018.1| - 0.061 12.4 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.9 gi|389846779|ref|YP_006349018.1| - 0.094 11.6 1.5 8.9 5.1 0.8 2.1 1 1 1 2 2 2 0 KAP family P-loop domain Mg_chelatase PF01078.16 gi|389846779|ref|YP_006349018.1| - 0.12 11.4 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Myosin_head PF00063.16 gi|389846779|ref|YP_006349018.1| - 0.16 10.0 0.0 0.22 9.5 0.0 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) Rad17 PF03215.10 gi|389846779|ref|YP_006349018.1| - 0.2 10.2 0.0 0.91 8.1 0.0 1.8 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein NinG PF05766.7 gi|389846780|ref|YP_006349019.1| - 0.031 14.0 0.1 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein YhfH PF14149.1 gi|389846780|ref|YP_006349019.1| - 0.93 9.3 0.1 0.93 9.3 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein Sgf11 PF08209.6 gi|389846780|ref|YP_006349019.1| - 1.9 7.8 4.0 12 5.2 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2688 PF10892.3 gi|389846780|ref|YP_006349019.1| - 2.3 7.9 5.8 0.54 9.9 0.6 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) UPF0175 PF03683.8 gi|389846781|ref|YP_006349020.1| - 1e-14 53.7 0.3 1.3e-14 53.3 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|389846781|ref|YP_006349020.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) zf-HC2 PF13490.1 gi|389846781|ref|YP_006349020.1| - 0.15 12.0 0.1 0.3 11.0 0.1 1.5 1 0 0 1 1 1 0 Putative zinc-finger DUF3368 PF11848.3 gi|389846782|ref|YP_006349021.1| - 1.1e-05 24.8 0.0 2.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) NAD_binding_3 PF03447.11 gi|389846782|ref|YP_006349021.1| - 0.046 14.1 0.1 0.098 13.0 0.0 1.6 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain MarR_2 PF12802.2 gi|389846783|ref|YP_006349022.1| - 0.024 14.3 0.1 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF3829 PF12889.2 gi|389846783|ref|YP_006349022.1| - 0.051 12.7 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) HTH_24 PF13412.1 gi|389846783|ref|YP_006349022.1| - 0.072 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|389846783|ref|YP_006349022.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.7 2 1 0 2 2 2 0 LexA DNA binding domain HTH_12 PF08461.5 gi|389846787|ref|YP_006349026.1| - 5.1e-07 29.3 0.2 5.8e-07 29.1 0.1 1.1 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|389846787|ref|YP_006349026.1| - 6.8e-06 25.8 0.1 1e-05 25.2 0.1 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix FUR PF01475.14 gi|389846787|ref|YP_006349026.1| - 8.8e-05 22.4 0.0 9.7e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_24 PF13412.1 gi|389846787|ref|YP_006349026.1| - 0.00045 19.5 0.1 0.004 16.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|389846787|ref|YP_006349026.1| - 0.0007 19.3 0.1 0.001 18.8 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389846787|ref|YP_006349026.1| - 0.0052 16.4 0.1 0.0084 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|389846787|ref|YP_006349026.1| - 0.0052 16.5 0.1 0.0074 16.0 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|389846787|ref|YP_006349026.1| - 0.008 15.8 0.1 0.048 13.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|389846787|ref|YP_006349026.1| - 0.011 15.2 0.1 0.035 13.6 0.1 1.8 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain S10_plectin PF03501.10 gi|389846787|ref|YP_006349026.1| - 0.03 14.1 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Plectin/S10 domain Rrf2 PF02082.15 gi|389846787|ref|YP_006349026.1| - 0.031 14.3 0.0 0.046 13.8 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator Mrr_N PF14338.1 gi|389846787|ref|YP_006349026.1| - 0.035 14.1 0.0 0.057 13.5 0.0 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain YjcQ PF09639.5 gi|389846787|ref|YP_006349026.1| - 0.042 13.9 0.0 0.09 12.8 0.0 1.5 1 1 0 1 1 1 0 YjcQ protein HTH_27 PF13463.1 gi|389846787|ref|YP_006349026.1| - 0.055 13.7 0.0 0.098 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|389846787|ref|YP_006349026.1| - 0.078 12.8 0.2 1.4 8.9 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|389846787|ref|YP_006349026.1| - 0.1 12.2 0.1 0.42 10.2 0.1 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|389846787|ref|YP_006349026.1| - 0.11 12.0 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_11 PF08279.7 gi|389846787|ref|YP_006349026.1| - 0.12 11.9 0.3 0.31 10.6 0.2 1.8 1 1 0 1 1 1 0 HTH domain GntR PF00392.16 gi|389846787|ref|YP_006349026.1| - 0.15 11.5 0.2 0.41 10.1 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|389846788|ref|YP_006349027.1| - 1.7e-05 24.5 0.0 2.2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|389846788|ref|YP_006349027.1| - 0.001 18.8 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|389846788|ref|YP_006349027.1| - 0.0018 18.3 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|389846788|ref|YP_006349027.1| - 0.0052 16.4 0.0 0.0078 15.8 0.0 1.2 1 0 0 1 1 1 1 MarR family Mrr_N PF14338.1 gi|389846788|ref|YP_006349027.1| - 0.0061 16.6 0.0 0.026 14.6 0.0 1.9 2 1 0 2 2 2 1 Mrr N-terminal domain DUF1441 PF07278.6 gi|389846788|ref|YP_006349027.1| - 0.0077 15.8 0.0 0.0098 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1441) DUF2250 PF10007.4 gi|389846788|ref|YP_006349027.1| - 0.011 15.5 0.0 0.019 14.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Phage_rep_org_N PF09681.5 gi|389846788|ref|YP_006349027.1| - 0.019 14.5 0.0 0.021 14.3 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|389846788|ref|YP_006349027.1| - 0.051 13.2 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|389846788|ref|YP_006349027.1| - 0.088 12.5 0.1 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HrcA_DNA-bdg PF03444.10 gi|389846788|ref|YP_006349027.1| - 0.11 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PadR PF03551.9 gi|389846790|ref|YP_006349029.1| - 4.1e-07 29.6 0.1 1.2e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family zf-ribbon_3 PF13248.1 gi|389846790|ref|YP_006349029.1| - 0.036 13.2 2.1 5.3 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|389846790|ref|YP_006349029.1| - 0.042 13.5 0.2 0.079 12.6 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|389846790|ref|YP_006349029.1| - 0.17 11.4 3.1 0.3 10.6 2.1 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|389846790|ref|YP_006349029.1| - 0.22 10.8 1.4 0.59 9.4 1.0 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|389846790|ref|YP_006349029.1| - 1.3 8.5 5.0 3 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DinB_2 PF12867.2 gi|389846791|ref|YP_006349030.1| - 0.00012 22.3 1.8 0.24 11.7 0.3 2.3 1 1 0 2 2 2 2 DinB superfamily ImcF-related_N PF14331.1 gi|389846791|ref|YP_006349030.1| - 0.047 12.5 1.7 0.38 9.6 0.4 2.1 2 0 0 2 2 2 0 ImcF-related N-terminal domain DUF479 PF04336.7 gi|389846791|ref|YP_006349030.1| - 0.071 13.2 0.1 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF479 DUF2163 PF09931.4 gi|389846791|ref|YP_006349030.1| - 0.11 12.2 0.1 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) GldM_N PF12081.3 gi|389846791|ref|YP_006349030.1| - 0.11 11.9 1.8 0.19 11.2 0.6 1.7 1 1 1 2 2 2 0 GldM N-terminal domain NdhM PF10664.4 gi|389846791|ref|YP_006349030.1| - 0.16 11.9 0.8 0.43 10.5 0.5 1.7 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M DUF4398 PF14346.1 gi|389846791|ref|YP_006349030.1| - 0.21 11.6 4.2 1.2 9.2 2.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) DUF3702 PF12486.3 gi|389846791|ref|YP_006349030.1| - 0.27 10.9 3.5 0.49 10.0 1.3 1.9 2 0 0 2 2 2 0 ImpA domain protein HalX PF08663.5 gi|389846791|ref|YP_006349030.1| - 0.54 10.2 10.2 0.36 10.8 2.1 2.9 2 1 1 3 3 3 0 HalX domain 4HB_MCP_1 PF12729.2 gi|389846791|ref|YP_006349030.1| - 1.4 8.1 6.8 5.6 6.2 2.4 2.4 2 1 1 3 3 3 0 Four helix bundle sensory module for signal transduction Latarcin PF10279.4 gi|389846791|ref|YP_006349030.1| - 1.9 8.7 7.7 1.6 8.9 3.7 2.0 2 0 0 2 2 2 0 Latarcin precursor Phage_integrase PF00589.17 gi|662859432|ref|YP_006349033.2| - 2.4e-13 50.1 0.0 3.6e-12 46.2 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|662859432|ref|YP_006349033.2| - 3e-09 36.9 0.5 4.6e-08 33.1 0.1 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|662859432|ref|YP_006349033.2| - 1.1e-07 32.1 0.1 2.7e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.2 gi|662859432|ref|YP_006349033.2| - 0.00034 20.9 0.1 0.00074 19.8 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal HTH_7 PF02796.10 gi|662859432|ref|YP_006349033.2| - 0.084 12.7 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HCaRG PF07258.9 gi|662859432|ref|YP_006349033.2| - 0.11 12.0 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 HCaRG protein HIPIP PF01355.12 gi|389846795|ref|YP_006349034.1| - 0.0082 16.2 0.3 0.01 15.9 0.2 1.1 1 0 0 1 1 1 1 High potential iron-sulfur protein DZR PF12773.2 gi|389846797|ref|YP_006349036.1| - 0.0053 16.5 9.0 0.48 10.2 5.6 2.9 1 1 1 2 2 2 2 Double zinc ribbon RNHCP PF12647.2 gi|389846797|ref|YP_006349036.1| - 0.038 13.8 1.3 0.038 13.8 0.9 2.1 2 1 0 2 2 2 0 RNHCP domain Zn-ribbon_8 PF09723.5 gi|389846797|ref|YP_006349036.1| - 0.041 13.8 6.0 0.13 12.2 0.6 3.0 3 1 0 3 3 3 0 Zinc ribbon domain DUF1272 PF06906.6 gi|389846797|ref|YP_006349036.1| - 0.056 13.2 7.5 0.36 10.7 1.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) API5 PF05918.6 gi|389846797|ref|YP_006349036.1| - 0.13 10.7 0.0 0.13 10.7 0.0 1.0 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) zf-C4_Topoisom PF01396.14 gi|389846797|ref|YP_006349036.1| - 0.25 10.8 0.0 0.25 10.8 0.0 2.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|389846797|ref|YP_006349036.1| - 0.36 10.1 9.9 4.7 6.6 0.0 3.8 1 1 3 4 4 4 0 TFIIB zinc-binding zf-piccolo PF05715.8 gi|389846797|ref|YP_006349036.1| - 0.67 10.0 4.8 2 8.4 0.1 2.5 3 0 0 3 3 3 0 Piccolo Zn-finger zf-RING_3 PF14369.1 gi|389846797|ref|YP_006349036.1| - 0.78 9.7 15.4 3 7.9 1.9 3.7 2 1 1 3 3 3 0 zinc-finger C1_1 PF00130.17 gi|389846797|ref|YP_006349036.1| - 1 9.1 7.2 3 7.6 0.0 3.0 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.1 gi|389846797|ref|YP_006349036.1| - 2.4 7.8 10.4 5.5 6.7 3.9 2.9 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|389846797|ref|YP_006349036.1| - 4.2 7.1 11.4 3.3 7.5 1.4 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|389846797|ref|YP_006349036.1| - 7.9 5.7 11.2 3.6 6.8 0.1 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger DUF4098 PF13345.1 gi|389846798|ref|YP_006349037.1| - 1.1e-07 31.6 7.4 0.0068 16.3 0.8 3.7 1 1 3 4 4 4 4 Domain of unknown function (DUF4098) HtaA PF04213.8 gi|389846798|ref|YP_006349037.1| - 9.9e-05 22.6 1.6 0.96 9.6 0.1 2.8 1 1 2 3 3 3 2 Htaa Fibrinogen_BP PF08017.6 gi|389846798|ref|YP_006349037.1| - 0.0037 15.5 0.2 0.0047 15.1 0.1 1.1 1 0 0 1 1 1 1 Fibrinogen binding protein DUF3540 PF12059.3 gi|389846798|ref|YP_006349037.1| - 0.0053 16.4 0.0 1.8 8.1 0.0 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF3540) DUF2807 PF10988.3 gi|389846798|ref|YP_006349037.1| - 0.0078 15.7 3.2 0.46 10.0 2.1 3.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2807) MinE PF03776.9 gi|389846798|ref|YP_006349037.1| - 0.22 11.0 3.2 2.2 7.8 0.1 3.3 3 0 0 3 3 3 0 Septum formation topological specificity factor MinE AsmA_2 PF13502.1 gi|389846798|ref|YP_006349037.1| - 0.23 10.7 1.0 3.2 7.0 0.1 2.9 1 1 2 3 3 3 0 AsmA-like C-terminal region HSP20 PF00011.16 gi|389846798|ref|YP_006349037.1| - 0.97 9.3 9.6 0.56 10.0 0.5 3.6 1 1 3 4 4 4 0 Hsp20/alpha crystallin family Stap_Strp_toxin PF01123.15 gi|389846798|ref|YP_006349037.1| - 1.2 9.6 4.9 5.2 7.6 0.1 3.4 1 1 1 2 2 2 0 Staphylococcal/Streptococcal toxin, OB-fold domain Copper-bind PF00127.15 gi|389846799|ref|YP_006349038.1| - 4.5e-26 90.9 3.5 4.9e-16 58.7 0.2 3.3 3 2 0 3 3 3 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389846799|ref|YP_006349038.1| - 7.5e-08 32.2 0.0 0.00036 20.3 0.0 2.4 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|389846799|ref|YP_006349038.1| - 0.62 10.2 6.7 0.098 12.7 1.9 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.2 gi|389846800|ref|YP_006349039.1| - 1.4e-11 43.9 0.7 1.9e-11 43.5 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389846800|ref|YP_006349039.1| - 9.2e-06 25.1 0.3 1.4e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389846800|ref|YP_006349039.1| - 0.00012 21.6 0.1 0.00019 21.0 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389846800|ref|YP_006349039.1| - 0.00024 20.7 0.0 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389846800|ref|YP_006349039.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF973 PF06157.6 gi|389846801|ref|YP_006349040.1| - 0.15 11.0 2.7 0.17 10.8 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF981 PF06168.6 gi|389846801|ref|YP_006349040.1| - 0.33 10.7 5.6 0.45 10.2 3.9 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF981) UPF0233 PF06781.7 gi|389846801|ref|YP_006349040.1| - 0.48 10.0 3.1 1.8 8.2 0.3 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) DUF4131 PF13567.1 gi|389846801|ref|YP_006349040.1| - 1.1 8.6 4.5 1.8 7.9 3.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF202 PF02656.10 gi|389846801|ref|YP_006349040.1| - 5.4 7.2 7.5 1.5 9.1 2.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Methyltransf_11 PF08241.7 gi|389846802|ref|YP_006349041.1| - 2.3e-20 72.8 0.0 3.7e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846802|ref|YP_006349041.1| - 3.4e-17 62.6 0.0 4.5e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846802|ref|YP_006349041.1| - 1.5e-13 50.9 0.0 2.7e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846802|ref|YP_006349041.1| - 3.9e-12 46.0 0.0 4.7e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846802|ref|YP_006349041.1| - 4.4e-10 39.9 0.0 7.5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846802|ref|YP_006349041.1| - 5.8e-10 39.2 0.1 1.1e-09 38.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846802|ref|YP_006349041.1| - 4e-09 37.0 0.0 6.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846802|ref|YP_006349041.1| - 5.6e-07 28.9 0.0 1.9e-06 27.1 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|389846802|ref|YP_006349041.1| - 4.7e-05 23.1 0.0 6.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|389846802|ref|YP_006349041.1| - 0.0003 19.9 0.0 0.00041 19.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|389846802|ref|YP_006349041.1| - 0.001 18.2 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|389846802|ref|YP_006349041.1| - 0.0016 17.9 0.0 0.0037 16.7 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.14 gi|389846802|ref|YP_006349041.1| - 0.036 14.0 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.6 gi|389846802|ref|YP_006349041.1| - 0.053 12.2 0.0 0.07 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DHFR_1 PF00186.14 gi|389846803|ref|YP_006349042.1| - 1.6e-41 141.6 0.0 1.8e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase DUF1205 PF06722.7 gi|389846803|ref|YP_006349042.1| - 0.086 13.0 0.1 0.2 11.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1205) MFS_1 PF07690.11 gi|389846804|ref|YP_006349043.1| - 1.5e-51 175.1 49.9 5.5e-29 100.9 11.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|389846804|ref|YP_006349043.1| - 0.0029 15.7 3.7 0.0029 15.7 2.5 3.5 2 2 1 3 3 3 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|389846804|ref|YP_006349043.1| - 0.014 15.1 0.0 0.059 13.1 0.0 2.1 1 0 0 1 1 1 0 MFS_1 like family OATP PF03137.15 gi|389846804|ref|YP_006349043.1| - 0.12 10.4 12.1 0.44 8.5 0.5 2.2 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HATPase_c PF02518.21 gi|389846805|ref|YP_006349044.1| - 1.5e-14 53.6 0.0 2.9e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|389846805|ref|YP_006349044.1| - 6.6e-08 32.3 0.1 1.2e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|389846805|ref|YP_006349044.1| - 6.9e-05 22.7 0.9 0.00018 21.4 0.6 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|389846805|ref|YP_006349044.1| - 0.0098 15.5 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|389846805|ref|YP_006349044.1| - 0.047 13.3 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2306 PF10067.4 gi|389846805|ref|YP_006349044.1| - 0.093 12.8 1.4 0.18 11.9 1.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) Polysacc_synt_3 PF13440.1 gi|389846805|ref|YP_006349044.1| - 0.35 10.2 8.2 0.085 12.3 3.5 1.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.15 gi|389846806|ref|YP_006349045.1| - 1.3e-37 128.8 0.0 2.3e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|389846806|ref|YP_006349045.1| - 1.2e-16 61.1 0.1 2.4e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389846806|ref|YP_006349045.1| - 1.5e-08 34.9 7.2 4.1e-05 23.7 0.1 3.1 2 1 1 3 3 3 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|389846806|ref|YP_006349045.1| - 3.1e-07 30.5 0.0 7.9e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|389846806|ref|YP_006349045.1| - 4.2e-05 23.3 0.5 0.00021 21.0 0.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 PTPS PF01242.14 gi|389846807|ref|YP_006349046.1| - 6e-20 71.1 0.0 6.6e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Uricase PF01014.13 gi|389846807|ref|YP_006349046.1| - 0.012 15.7 0.0 0.019 15.0 0.0 1.3 1 1 0 1 1 1 0 Uricase ADH_zinc_N PF00107.21 gi|389846808|ref|YP_006349047.1| - 3.3e-09 36.3 0.0 6.6e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389846808|ref|YP_006349047.1| - 0.0061 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain GGDN PF05165.7 gi|662859433|ref|YP_006349048.2| - 6.3e-88 293.9 0.2 7.6e-88 293.7 0.1 1.0 1 0 0 1 1 1 1 GGDN family Hydrolase_6 PF13344.1 gi|389846810|ref|YP_006349049.1| - 1.6e-23 82.4 0.0 2.7e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389846810|ref|YP_006349049.1| - 3.7e-18 65.0 1.4 8.1e-18 63.9 0.1 2.2 3 0 0 3 3 3 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|389846810|ref|YP_006349049.1| - 4.1e-10 40.1 0.1 1.2e-05 25.5 0.0 2.8 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389846810|ref|YP_006349049.1| - 5.8e-08 33.4 0.2 1.7e-06 28.5 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|389846810|ref|YP_006349049.1| - 0.0059 15.9 0.1 0.042 13.1 0.0 2.2 3 0 0 3 3 3 1 Mitochondrial PGP phosphatase DJ-1_PfpI PF01965.19 gi|389846811|ref|YP_006349050.1| - 4.1e-38 130.1 0.0 4.9e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|389846811|ref|YP_006349050.1| - 8.6e-11 41.3 0.0 1.6e-10 40.5 0.0 1.4 1 1 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|389846811|ref|YP_006349050.1| - 0.00021 20.9 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|389846811|ref|YP_006349050.1| - 0.00023 20.6 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I OsmC PF02566.14 gi|389846812|ref|YP_006349051.1| - 3e-13 49.8 0.0 4e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Lactamase_B_3 PF13483.1 gi|389846813|ref|YP_006349052.1| - 5.9e-20 71.6 0.5 9.6e-20 70.9 0.4 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|389846813|ref|YP_006349052.1| - 2.5e-17 63.0 0.3 3.1e-17 62.7 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|389846813|ref|YP_006349052.1| - 1.3e-08 34.6 8.6 3.4e-08 33.3 6.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAA_hydrolase PF01557.13 gi|662859434|ref|YP_006349053.2| - 2.9e-64 216.5 0.3 3.5e-64 216.2 0.2 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family O-antigen_lig PF13425.1 gi|389846815|ref|YP_006349054.1| - 0.0096 15.9 0.5 0.0099 15.8 0.3 1.0 1 0 0 1 1 1 1 O-antigen ligase like membrane protein BRI3BP PF14965.1 gi|389846815|ref|YP_006349054.1| - 0.012 14.9 1.9 0.015 14.7 1.3 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Virul_fac_BrkB PF03631.10 gi|389846815|ref|YP_006349054.1| - 0.023 14.0 1.1 0.024 14.0 0.8 1.2 1 0 0 1 1 1 0 Virulence factor BrkB Choline_transpo PF04515.7 gi|389846815|ref|YP_006349054.1| - 0.036 12.8 0.2 0.036 12.8 0.1 1.0 1 0 0 1 1 1 0 Plasma-membrane choline transporter DUF2374 PF09574.5 gi|389846815|ref|YP_006349054.1| - 0.05 13.2 0.7 0.05 13.2 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) DUF3040 PF11239.3 gi|389846815|ref|YP_006349054.1| - 0.35 10.9 5.4 0.45 10.5 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF4131 PF13567.1 gi|389846815|ref|YP_006349054.1| - 0.38 10.1 1.7 0.44 9.9 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PsbJ PF01788.12 gi|389846815|ref|YP_006349054.1| - 4.6 6.8 6.9 0.78 9.3 0.2 2.2 2 0 0 2 2 2 0 PsbJ RhodobacterPufX PF11511.3 gi|389846815|ref|YP_006349054.1| - 7.4 6.0 7.9 2 7.8 3.5 1.5 1 1 1 2 2 2 0 Intrinsic membrane protein PufX Gluconate_2-dh3 PF13618.1 gi|389846816|ref|YP_006349055.1| - 1.1e-16 61.1 0.0 1.5e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DUF2059 PF09832.4 gi|389846816|ref|YP_006349055.1| - 0.0083 16.1 0.0 0.032 14.2 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2059) DUF2173 PF09941.4 gi|389846816|ref|YP_006349055.1| - 0.067 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) GMC_oxred_C PF05199.8 gi|389846817|ref|YP_006349056.1| - 1.9e-24 86.6 0.5 4.5e-24 85.3 0.4 1.7 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|389846817|ref|YP_006349056.1| - 2e-11 43.5 0.0 4.4e-11 42.4 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|389846817|ref|YP_006349056.1| - 6.1e-11 41.8 3.9 1.6e-06 27.3 0.0 2.9 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389846817|ref|YP_006349056.1| - 2.8e-09 36.3 1.7 0.00014 20.8 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|389846817|ref|YP_006349056.1| - 6.4e-08 32.0 1.9 4.5e-05 22.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|389846817|ref|YP_006349056.1| - 1.9e-05 24.5 0.2 6.4e-05 22.9 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|389846817|ref|YP_006349056.1| - 7.1e-05 21.8 0.2 0.00011 21.2 0.2 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|389846817|ref|YP_006349056.1| - 7.6e-05 22.6 0.1 0.0019 18.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|389846817|ref|YP_006349056.1| - 0.00018 20.7 0.1 0.0056 15.7 0.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|389846817|ref|YP_006349056.1| - 0.00025 20.1 0.1 0.00046 19.3 0.0 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|389846817|ref|YP_006349056.1| - 0.00044 18.8 2.3 0.0018 16.8 0.7 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|389846817|ref|YP_006349056.1| - 0.0045 17.0 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|389846817|ref|YP_006349056.1| - 0.0096 15.3 0.1 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|389846817|ref|YP_006349056.1| - 0.033 14.5 0.1 0.35 11.2 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.1 gi|389846817|ref|YP_006349056.1| - 0.037 14.0 0.1 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain GIDA PF01134.17 gi|389846817|ref|YP_006349056.1| - 0.038 12.8 0.4 0.086 11.6 0.1 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4_17 PF13534.1 gi|389846817|ref|YP_006349056.1| - 0.092 13.1 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389846817|ref|YP_006349056.1| - 0.12 12.7 0.4 0.31 11.4 0.3 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|389846817|ref|YP_006349056.1| - 0.13 11.9 0.1 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|389846817|ref|YP_006349056.1| - 0.14 12.4 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer4_18 PF13746.1 gi|389846817|ref|YP_006349056.1| - 0.14 12.5 0.1 0.36 11.2 0.1 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain ThiF PF00899.16 gi|389846817|ref|YP_006349056.1| - 0.15 11.8 0.3 0.29 10.9 0.2 1.4 1 0 0 1 1 1 0 ThiF family TrkA_N PF02254.13 gi|389846817|ref|YP_006349056.1| - 0.18 11.8 0.3 0.44 10.5 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|389846817|ref|YP_006349056.1| - 0.31 10.7 2.0 2 8.1 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding PBP_like_2 PF12849.2 gi|389846818|ref|YP_006349057.1| - 9.3e-20 71.2 0.1 1.2e-19 70.8 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|389846818|ref|YP_006349057.1| - 9.2e-09 35.2 0.1 6.1e-08 32.5 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|389846818|ref|YP_006349057.1| - 6.5e-06 25.2 0.7 9.7e-06 24.6 0.0 1.6 2 0 0 2 2 2 1 PBP superfamily domain LysR_substrate PF03466.15 gi|389846818|ref|YP_006349057.1| - 0.0037 16.3 0.1 0.0049 16.0 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain Aminotran_1_2 PF00155.16 gi|389846819|ref|YP_006349058.1| - 2.5e-69 233.9 0.0 2.8e-69 233.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II FTR PF01913.13 gi|389846819|ref|YP_006349058.1| - 0.028 14.1 0.2 0.059 13.0 0.1 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase Alliinase_C PF04864.8 gi|389846819|ref|YP_006349058.1| - 0.038 12.6 0.0 0.061 11.9 0.0 1.3 1 0 0 1 1 1 0 Allinase Cys_Met_Meta_PP PF01053.15 gi|389846819|ref|YP_006349058.1| - 0.047 11.9 0.0 0.12 10.6 0.0 1.6 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme AAA_18 PF13238.1 gi|389846820|ref|YP_006349059.1| - 6.6e-23 81.4 0.1 8.9e-23 81.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389846820|ref|YP_006349059.1| - 3.6e-16 60.0 2.1 1.3e-15 58.2 1.4 1.8 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|389846820|ref|YP_006349059.1| - 3e-05 23.9 0.1 0.061 13.1 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_33 PF13671.1 gi|389846820|ref|YP_006349059.1| - 5.5e-05 23.0 1.0 0.095 12.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|389846820|ref|YP_006349059.1| - 8.1e-05 22.2 0.0 0.0002 21.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|389846820|ref|YP_006349059.1| - 0.00054 20.1 0.0 0.0011 19.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|389846820|ref|YP_006349059.1| - 0.00079 19.5 0.0 0.0014 18.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|389846820|ref|YP_006349059.1| - 0.0011 18.9 0.4 0.0011 18.9 0.3 2.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389846820|ref|YP_006349059.1| - 0.0026 17.7 0.1 0.0047 16.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|389846820|ref|YP_006349059.1| - 0.0058 16.3 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 NTPase Zeta_toxin PF06414.7 gi|389846820|ref|YP_006349059.1| - 0.029 13.4 0.2 0.096 11.7 0.0 1.9 2 1 0 2 2 2 0 Zeta toxin ATP_bind_2 PF03668.10 gi|389846820|ref|YP_006349059.1| - 0.054 12.5 0.1 0.066 12.2 0.1 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family KTI12 PF08433.5 gi|389846820|ref|YP_006349059.1| - 0.08 12.1 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ADK PF00406.17 gi|389846820|ref|YP_006349059.1| - 0.094 12.5 0.0 9.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase RuvB_N PF05496.7 gi|389846820|ref|YP_006349059.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|389846820|ref|YP_006349059.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|389846820|ref|YP_006349059.1| - 0.11 12.2 0.0 1.4 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|389846820|ref|YP_006349059.1| - 0.36 10.3 3.0 1.1 8.7 2.1 1.8 1 1 0 1 1 1 0 AAA domain CDP-OH_P_transf PF01066.16 gi|389846821|ref|YP_006349060.1| - 4e-13 49.5 9.8 1.2e-12 47.9 6.8 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HTH_3 PF01381.17 gi|389846822|ref|YP_006349061.1| - 1.7e-07 30.9 1.1 2.7e-07 30.3 0.8 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|389846822|ref|YP_006349061.1| - 3.1e-07 30.4 0.4 5.6e-07 29.6 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|389846822|ref|YP_006349061.1| - 1.5e-05 24.9 0.4 2.8e-05 24.0 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|389846822|ref|YP_006349061.1| - 5.7e-05 22.6 0.8 9e-05 22.0 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|389846822|ref|YP_006349061.1| - 0.017 14.8 0.6 0.041 13.6 0.4 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF3775 PF12616.3 gi|389846822|ref|YP_006349061.1| - 0.031 14.0 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) Macoilin PF09726.4 gi|389846822|ref|YP_006349061.1| - 0.12 10.6 5.6 0.13 10.5 3.9 1.1 1 0 0 1 1 1 0 Transmembrane protein Pox_A12 PF04651.8 gi|389846822|ref|YP_006349061.1| - 0.21 11.6 6.5 0.27 11.3 4.5 1.3 1 0 0 1 1 1 0 Poxvirus A12 protein Corona_nucleoca PF00937.13 gi|389846822|ref|YP_006349061.1| - 0.32 9.9 7.7 0.4 9.5 5.4 1.2 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein RAP1 PF07218.6 gi|389846822|ref|YP_006349061.1| - 3.4 5.6 7.2 3.7 5.5 5.0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF515 PF04415.7 gi|389846822|ref|YP_006349061.1| - 7.3 4.7 8.1 9.8 4.2 5.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) TIM PF00121.13 gi|662859435|ref|YP_006349062.2| - 2e-21 76.1 0.6 5.8e-19 68.1 0.4 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|662859435|ref|YP_006349062.2| - 0.00026 20.1 1.4 0.00026 20.1 1.0 2.1 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|662859435|ref|YP_006349062.2| - 0.0042 16.1 0.0 0.0064 15.5 0.0 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.1 gi|662859435|ref|YP_006349062.2| - 0.006 16.2 0.9 0.2 11.4 0.1 2.5 2 0 0 2 2 2 1 HAD-hyrolase-like FMN_dh PF01070.13 gi|662859435|ref|YP_006349062.2| - 0.25 10.1 7.8 0.084 11.7 3.2 1.7 2 1 0 2 2 2 0 FMN-dependent dehydrogenase AAA_10 PF12846.2 gi|389846824|ref|YP_006349063.1| - 2.6e-20 73.1 0.2 3e-10 40.0 0.0 3.1 2 1 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|389846824|ref|YP_006349063.1| - 2.4e-12 47.1 0.4 8e-12 45.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 Zot PF05707.7 gi|389846824|ref|YP_006349063.1| - 0.0014 18.1 0.0 0.31 10.4 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|389846824|ref|YP_006349063.1| - 0.0022 16.4 3.1 0.021 13.1 0.0 2.7 3 1 0 3 3 3 1 Bacterial protein of unknown function (DUF853) CbiA PF01656.18 gi|389846824|ref|YP_006349063.1| - 0.0036 16.7 0.2 0.0083 15.5 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4515 PF14988.1 gi|389846824|ref|YP_006349063.1| - 0.0067 16.1 4.1 0.32 10.6 2.7 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4515) FtsK_SpoIIIE PF01580.13 gi|389846824|ref|YP_006349063.1| - 0.0078 15.7 4.3 0.011 15.2 0.0 2.9 2 2 0 2 2 2 1 FtsK/SpoIIIE family APS_kinase PF01583.15 gi|389846824|ref|YP_006349063.1| - 0.019 14.6 0.0 0.063 12.9 0.0 1.9 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_17 PF13207.1 gi|389846824|ref|YP_006349063.1| - 0.02 15.6 1.5 0.11 13.3 0.0 2.6 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.1 gi|389846824|ref|YP_006349063.1| - 0.036 13.4 0.0 0.11 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|389846824|ref|YP_006349063.1| - 0.044 12.2 2.4 0.067 11.6 1.7 1.2 1 0 0 1 1 1 0 AAA domain ERM PF00769.14 gi|389846824|ref|YP_006349063.1| - 0.056 12.9 7.1 0.095 12.2 4.9 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family AAA_19 PF13245.1 gi|389846824|ref|YP_006349063.1| - 0.067 12.9 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|389846824|ref|YP_006349063.1| - 0.07 11.7 0.1 0.18 10.3 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Atg14 PF10186.4 gi|389846824|ref|YP_006349063.1| - 0.076 11.9 1.0 0.12 11.3 0.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TMF_DNA_bd PF12329.3 gi|389846824|ref|YP_006349063.1| - 0.085 12.6 6.3 0.19 11.5 4.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|389846824|ref|YP_006349063.1| - 0.1 12.2 2.6 0.17 11.4 1.8 1.3 1 0 0 1 1 1 0 IncA protein MobB PF03205.9 gi|389846824|ref|YP_006349063.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Med9 PF07544.8 gi|389846824|ref|YP_006349063.1| - 0.1 12.3 3.8 0.24 11.1 2.6 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF4407 PF14362.1 gi|389846824|ref|YP_006349063.1| - 0.1 11.5 3.9 0.15 10.9 2.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Bcr-Abl_Oligo PF09036.5 gi|389846824|ref|YP_006349063.1| - 0.11 12.4 0.5 0.28 11.1 0.3 1.7 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain DUF2360 PF10152.4 gi|389846824|ref|YP_006349063.1| - 0.2 11.9 3.3 0.42 10.8 2.3 1.5 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) PspA_IM30 PF04012.7 gi|389846824|ref|YP_006349063.1| - 0.25 10.6 13.3 0.013 14.8 5.4 1.6 2 0 0 2 2 2 0 PspA/IM30 family DUF641 PF04859.7 gi|389846824|ref|YP_006349063.1| - 0.93 9.2 5.6 1.5 8.6 2.7 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) AAA_23 PF13476.1 gi|389846824|ref|YP_006349063.1| - 1.1 9.5 8.3 9.5 6.4 5.8 2.0 1 1 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|389846824|ref|YP_006349063.1| - 1.2 8.7 5.4 3.2 7.3 3.8 1.7 1 0 0 1 1 1 0 Septum formation initiator Med4 PF10018.4 gi|389846824|ref|YP_006349063.1| - 1.2 8.4 10.8 0.15 11.4 4.0 1.9 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Response_reg PF00072.19 gi|389846825|ref|YP_006349064.1| - 9.6e-21 73.8 0.0 2e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|389846825|ref|YP_006349064.1| - 2.2e-20 72.4 0.2 2.7e-19 68.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|389846825|ref|YP_006349064.1| - 8.2e-18 64.4 1.5 1e-13 51.2 0.1 3.1 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|389846825|ref|YP_006349064.1| - 1.8e-13 50.3 4.0 2e-13 50.2 0.2 2.8 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|389846825|ref|YP_006349064.1| - 1.7e-12 47.1 0.1 5e-12 45.6 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|389846825|ref|YP_006349064.1| - 2.3e-11 43.9 0.0 2e-07 31.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.1 gi|389846825|ref|YP_006349064.1| - 0.018 14.6 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|389846825|ref|YP_006349064.1| - 0.063 13.5 0.0 0.67 10.2 0.0 2.5 2 0 0 2 2 2 0 PAS domain HATPase_c_5 PF14501.1 gi|389846825|ref|YP_006349064.1| - 0.15 11.7 0.0 0.5 10.1 0.0 1.9 2 0 0 2 2 2 0 GHKL domain IMS PF00817.15 gi|389846826|ref|YP_006349065.1| - 1.5e-37 128.6 0.0 2.7e-37 127.8 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|389846826|ref|YP_006349065.1| - 1.2e-17 63.9 0.0 2.4e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|389846826|ref|YP_006349065.1| - 6.6e-08 32.1 0.0 1.4e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|389846826|ref|YP_006349065.1| - 0.00024 21.2 0.0 0.00066 19.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|389846826|ref|YP_006349065.1| - 0.0027 17.2 0.0 0.0052 16.3 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ABC_trans_N PF14510.1 gi|389846826|ref|YP_006349065.1| - 0.019 15.0 1.7 1.3 9.1 0.0 3.4 3 1 0 3 3 3 0 ABC-transporter extracellular N-terminal HTH_24 PF13412.1 gi|389846827|ref|YP_006349066.1| - 6.8e-15 54.1 0.0 1e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389846827|ref|YP_006349066.1| - 1.6e-10 40.3 0.1 2.9e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|389846827|ref|YP_006349066.1| - 1.2e-09 37.7 0.0 1.8e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|389846827|ref|YP_006349066.1| - 1.3e-07 31.1 0.0 2.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|389846827|ref|YP_006349066.1| - 4.6e-07 29.6 0.1 1.4e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|389846827|ref|YP_006349066.1| - 8.5e-07 28.5 0.0 1.5e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|389846827|ref|YP_006349066.1| - 8.6e-07 28.6 0.0 2.2e-06 27.3 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389846827|ref|YP_006349066.1| - 1e-06 28.1 0.0 2e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|389846827|ref|YP_006349066.1| - 1.4e-06 27.9 0.0 5.2e-06 26.0 0.0 1.9 2 1 0 2 2 2 1 MarR family HTH_36 PF13730.1 gi|389846827|ref|YP_006349066.1| - 4e-06 26.8 0.0 7.5e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|389846827|ref|YP_006349066.1| - 5.6e-06 25.7 0.0 1.1e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|389846827|ref|YP_006349066.1| - 9.6e-06 25.2 0.1 1.8e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389846827|ref|YP_006349066.1| - 1.1e-05 24.9 0.0 2.4e-05 23.8 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|389846827|ref|YP_006349066.1| - 1.2e-05 24.8 0.0 1.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|389846827|ref|YP_006349066.1| - 5.1e-05 23.1 0.0 8.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|389846827|ref|YP_006349066.1| - 7.2e-05 22.8 0.0 0.0002 21.3 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_29 PF13551.1 gi|389846827|ref|YP_006349066.1| - 0.00024 21.1 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix LacI PF00356.16 gi|389846827|ref|YP_006349066.1| - 0.00027 20.5 0.0 0.0012 18.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_10 PF04967.7 gi|389846827|ref|YP_006349066.1| - 0.00034 20.1 0.1 0.00065 19.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389846827|ref|YP_006349066.1| - 0.00049 19.5 0.1 0.00094 18.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.16 gi|389846827|ref|YP_006349066.1| - 0.00054 19.3 0.0 0.0013 18.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|389846827|ref|YP_006349066.1| - 0.00098 19.2 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein TFIIE_alpha PF02002.12 gi|389846827|ref|YP_006349066.1| - 0.0017 17.8 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TetR_N PF00440.18 gi|389846827|ref|YP_006349066.1| - 0.0025 17.4 0.1 0.0049 16.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_34 PF13601.1 gi|389846827|ref|YP_006349066.1| - 0.0041 17.1 0.0 0.01 15.8 0.0 1.8 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_6 PF01418.12 gi|389846827|ref|YP_006349066.1| - 0.0047 16.6 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_17 PF12728.2 gi|389846827|ref|YP_006349066.1| - 0.0068 16.6 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|389846827|ref|YP_006349066.1| - 0.0079 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|389846827|ref|YP_006349066.1| - 0.0086 15.9 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_27 PF13463.1 gi|389846827|ref|YP_006349066.1| - 0.011 16.0 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|389846827|ref|YP_006349066.1| - 0.011 15.0 0.2 0.045 13.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|389846827|ref|YP_006349066.1| - 0.012 15.1 0.1 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|389846827|ref|YP_006349066.1| - 0.015 15.2 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 Transposase MerR PF00376.18 gi|389846827|ref|YP_006349066.1| - 0.016 14.7 0.1 0.033 13.7 0.1 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_1 PF00126.22 gi|389846827|ref|YP_006349066.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|389846827|ref|YP_006349066.1| - 0.028 14.2 0.0 0.061 13.1 0.0 1.6 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|389846827|ref|YP_006349066.1| - 0.049 13.5 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Mga PF08280.6 gi|389846827|ref|YP_006349066.1| - 0.059 13.1 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|389846827|ref|YP_006349066.1| - 0.06 12.5 0.0 0.096 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_30 PF13556.1 gi|389846827|ref|YP_006349066.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_CodY PF08222.6 gi|389846827|ref|YP_006349066.1| - 0.064 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_22 PF13309.1 gi|389846827|ref|YP_006349066.1| - 0.093 12.4 0.1 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain RP-C PF03428.8 gi|389846827|ref|YP_006349066.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain TPP_enzyme_C PF02775.16 gi|389846828|ref|YP_006349067.1| - 1.2e-30 106.0 0.2 1.8e-30 105.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|389846829|ref|YP_006349068.1| - 2.4e-49 167.9 0.1 4.7e-49 166.9 0.1 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|389846829|ref|YP_006349068.1| - 3.7e-49 166.9 0.0 6.9e-49 166.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|389846829|ref|YP_006349068.1| - 0.0031 17.0 0.0 0.0076 15.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|389846829|ref|YP_006349068.1| - 0.0068 16.3 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Chorismate_synt PF01264.16 gi|389846830|ref|YP_006349069.1| - 3.5e-123 410.5 0.0 4e-123 410.3 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Phosphodiest PF01663.17 gi|389846832|ref|YP_006349071.1| - 1.2e-30 107.1 0.1 4.1e-29 102.0 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|389846832|ref|YP_006349071.1| - 0.00085 19.0 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|389846832|ref|YP_006349071.1| - 0.02 14.2 0.1 0.06 12.7 0.1 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily EPSP_synthase PF00275.15 gi|389846833|ref|YP_006349072.1| - 3.7e-104 348.4 0.1 4.5e-104 348.2 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|389846833|ref|YP_006349072.1| - 0.09 13.1 0.2 0.42 10.9 0.0 2.3 2 1 0 2 2 2 0 Copper amine oxidase N-terminal domain CBS PF00571.23 gi|389846835|ref|YP_006349074.1| - 1.2e-28 98.6 7.8 1.3e-14 53.6 0.3 2.2 2 0 0 2 2 2 2 CBS domain MAF_flag10 PF01973.13 gi|389846835|ref|YP_006349074.1| - 0.053 13.0 0.1 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 LppC PF04348.8 gi|389846835|ref|YP_006349074.1| - 0.075 11.5 0.0 0.082 11.4 0.0 1.1 1 0 0 1 1 1 0 LppC putative lipoprotein CoA_binding PF02629.14 gi|389846835|ref|YP_006349074.1| - 0.11 12.9 0.7 0.18 12.3 0.5 1.4 1 1 0 1 1 1 0 CoA binding domain Peptidase_M24 PF00557.19 gi|389846836|ref|YP_006349075.1| - 8.1e-41 139.8 1.2 1e-40 139.5 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 adh_short PF00106.20 gi|389846838|ref|YP_006349077.1| - 6.9e-28 97.6 0.0 8.7e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389846838|ref|YP_006349077.1| - 4.9e-11 42.8 0.0 6.5e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389846838|ref|YP_006349077.1| - 4.3e-10 39.5 0.0 6.3e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389846838|ref|YP_006349077.1| - 0.00032 20.2 0.3 0.00051 19.5 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|389846838|ref|YP_006349077.1| - 0.04 13.9 0.9 0.6 10.0 0.9 2.6 2 1 0 2 2 2 0 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|389846838|ref|YP_006349077.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PDH PF02153.12 gi|389846840|ref|YP_006349079.1| - 1.2e-14 53.8 0.2 3e-13 49.2 0.2 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|389846840|ref|YP_006349079.1| - 0.00063 20.2 0.4 0.0038 17.7 0.0 2.4 1 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|389846840|ref|YP_006349079.1| - 0.023 15.0 0.0 0.16 12.4 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrbC PF04956.8 gi|389846840|ref|YP_006349079.1| - 0.024 14.6 0.6 2.9 7.9 0.1 2.5 2 0 0 2 2 2 0 TrbC/VIRB2 family Methyltransf_12 PF08242.7 gi|662859436|ref|YP_006349080.2| - 1.2e-08 35.3 0.0 3.2e-08 33.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|662859436|ref|YP_006349080.2| - 1.4e-07 31.3 0.0 2.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|662859436|ref|YP_006349080.2| - 3.7e-07 30.7 0.0 9.4e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|662859436|ref|YP_006349080.2| - 9.9e-07 28.4 0.0 2.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|662859436|ref|YP_006349080.2| - 1e-05 24.7 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_11 PF08241.7 gi|662859436|ref|YP_006349080.2| - 2.1e-05 24.8 0.0 5.6e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|662859436|ref|YP_006349080.2| - 0.0011 19.3 0.0 0.0023 18.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|662859436|ref|YP_006349080.2| - 0.0019 18.2 0.2 0.004 17.1 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|662859436|ref|YP_006349080.2| - 0.03 13.4 0.0 0.06 12.4 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G SurE PF01975.12 gi|662859437|ref|YP_006349081.2| - 2e-45 154.5 0.0 2.6e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Cutinase PF01083.17 gi|662859437|ref|YP_006349081.2| - 0.16 11.7 0.6 0.25 11.0 0.1 1.6 2 0 0 2 2 2 0 Cutinase Antibiotic_NAT PF02522.9 gi|389846843|ref|YP_006349082.1| - 5.6e-85 284.2 0.0 6.5e-85 284.0 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase OsmC PF02566.14 gi|389846844|ref|YP_006349083.1| - 1.8e-17 63.3 0.0 2.6e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein RRN7 PF11781.3 gi|389846844|ref|YP_006349083.1| - 0.18 11.2 0.7 0.36 10.3 0.5 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 OsmC PF02566.14 gi|662859438|ref|YP_006349084.2| - 1.9e-17 63.2 0.0 2.6e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein CMD PF02627.15 gi|389846846|ref|YP_006349085.1| - 4e-15 55.4 0.0 5.2e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.1 gi|389846846|ref|YP_006349085.1| - 0.0013 18.8 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain NicO PF03824.11 gi|389846847|ref|YP_006349086.1| - 1.4e-07 31.1 7.4 1.4e-07 31.1 5.1 2.4 3 1 0 2 2 2 1 High-affinity nickel-transport protein Polysacc_synt_C PF14667.1 gi|389846847|ref|YP_006349086.1| - 0.52 10.1 12.9 1.8 8.3 2.4 2.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Phage_holin_2 PF04550.7 gi|389846847|ref|YP_006349086.1| - 1.3 9.1 7.4 0.23 11.6 0.4 2.7 3 0 0 3 3 3 0 Phage holin family 2 NikR_C PF08753.6 gi|389846848|ref|YP_006349087.1| - 2.8e-12 46.3 0.3 4.2e-12 45.7 0.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|389846848|ref|YP_006349087.1| - 0.016 15.0 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Abi PF02517.11 gi|389846849|ref|YP_006349088.1| - 1.6e-12 47.3 4.2 1.6e-12 47.3 2.9 2.4 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2324 PF10086.4 gi|389846849|ref|YP_006349088.1| - 2.1e-05 23.8 1.4 2.1e-05 23.8 1.0 2.1 2 0 0 2 2 2 1 Putative membrane peptidase family (DUF2324) HTH_10 PF04967.7 gi|389846850|ref|YP_006349089.1| - 2.3e-15 55.8 0.1 6.1e-15 54.5 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain AsnC_trans_reg PF01037.16 gi|389846850|ref|YP_006349089.1| - 0.00095 18.8 0.0 0.33 10.6 0.0 2.6 2 0 0 2 2 2 2 AsnC family OCD_Mu_crystall PF02423.10 gi|389846850|ref|YP_006349089.1| - 0.061 12.0 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family LmjF365940-deam PF14421.1 gi|389846852|ref|YP_006349091.1| - 0.12 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 A distinct subfamily of CDD/CDA-like deaminases HxlR PF01638.12 gi|389846853|ref|YP_006349092.1| - 2.3e-26 91.2 0.0 2.6e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|389846853|ref|YP_006349092.1| - 0.00059 19.5 0.0 0.00088 19.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|389846853|ref|YP_006349092.1| - 0.042 13.6 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|389846853|ref|YP_006349092.1| - 0.086 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|389846853|ref|YP_006349092.1| - 0.12 12.0 0.1 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|389846853|ref|YP_006349092.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rdx PF10262.4 gi|389846854|ref|YP_006349093.1| - 3.8e-15 55.6 0.0 4.2e-15 55.5 0.0 1.0 1 0 0 1 1 1 1 Rdx family SBF PF01758.11 gi|389846855|ref|YP_006349094.1| - 2.4e-12 46.6 14.9 2.4e-12 46.6 10.3 1.7 1 1 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|389846855|ref|YP_006349094.1| - 2.1e-08 33.6 17.8 2.6e-08 33.3 12.1 1.4 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Thiolase_N PF00108.18 gi|389846855|ref|YP_006349094.1| - 0.11 11.4 0.8 0.18 10.7 0.5 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain HxlR PF01638.12 gi|389846856|ref|YP_006349095.1| - 5.9e-20 70.6 0.0 6.3e-20 70.6 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|389846856|ref|YP_006349095.1| - 1.4e-05 24.7 0.1 1.8e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|389846856|ref|YP_006349095.1| - 0.00073 19.2 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|389846856|ref|YP_006349095.1| - 0.0047 17.2 0.0 0.0063 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|389846856|ref|YP_006349095.1| - 0.0048 16.8 0.0 0.0056 16.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389846856|ref|YP_006349095.1| - 0.0063 16.1 0.0 0.009 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|389846856|ref|YP_006349095.1| - 0.0065 16.1 0.0 0.0083 15.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389846856|ref|YP_006349095.1| - 0.044 13.1 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CARD PF00619.16 gi|389846856|ref|YP_006349095.1| - 0.054 13.3 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Caspase recruitment domain HTH_45 PF14947.1 gi|389846856|ref|YP_006349095.1| - 0.083 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix CM_2 PF01817.16 gi|389846858|ref|YP_006349097.1| - 1.7e-17 63.2 3.7 2e-17 63.0 2.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|389846858|ref|YP_006349097.1| - 0.0044 17.3 1.4 0.0063 16.8 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4404) Osmo_CC PF08946.5 gi|389846858|ref|YP_006349097.1| - 0.067 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Osmosensory transporter coiled coil NPFF PF15085.1 gi|389846858|ref|YP_006349097.1| - 0.19 12.0 1.8 0.15 12.3 0.3 1.5 2 0 0 2 2 2 0 Neuropeptide FF GHMP_kinases_N PF00288.21 gi|662859439|ref|YP_006349098.2| - 6.2e-11 42.2 1.2 1.4e-10 41.0 0.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|662859439|ref|YP_006349098.2| - 0.024 14.8 0.4 0.068 13.3 0.0 2.0 2 0 0 2 2 2 0 GHMP kinases C terminal zf-C2H2_3 PF13878.1 gi|389846862|ref|YP_006349101.1| - 0.0026 17.2 1.9 0.0039 16.7 1.3 1.3 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO C1_4 PF07975.7 gi|389846862|ref|YP_006349101.1| - 0.021 14.8 0.2 0.024 14.6 0.2 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain Zn-ribbon_8 PF09723.5 gi|389846862|ref|YP_006349101.1| - 0.03 14.2 0.7 0.039 13.9 0.5 1.2 1 0 0 1 1 1 0 Zinc ribbon domain AAA PF00004.24 gi|389846863|ref|YP_006349102.1| - 7.2e-95 314.1 0.0 1.9e-46 157.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|389846863|ref|YP_006349102.1| - 1.7e-21 75.9 1.6 5.2e-21 74.3 0.2 2.6 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|389846863|ref|YP_006349102.1| - 9.3e-16 57.5 0.0 1e-06 27.9 0.0 3.1 4 0 0 4 4 4 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|389846863|ref|YP_006349102.1| - 3.8e-14 53.0 0.2 1.9e-05 24.7 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|389846863|ref|YP_006349102.1| - 4.2e-14 52.6 0.1 2.6e-06 27.3 0.0 3.2 3 1 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|389846863|ref|YP_006349102.1| - 2.7e-13 49.8 0.4 5.6e-05 22.8 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|389846863|ref|YP_006349102.1| - 1.3e-12 47.9 0.0 2.2e-05 24.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|389846863|ref|YP_006349102.1| - 6.4e-12 46.3 0.0 0.00015 22.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|389846863|ref|YP_006349102.1| - 1.8e-11 43.6 1.9 0.00015 21.4 0.0 3.5 3 0 0 3 3 2 2 Part of AAA domain AAA_22 PF13401.1 gi|389846863|ref|YP_006349102.1| - 1.9e-11 44.2 0.7 0.001 19.2 0.1 4.1 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|389846863|ref|YP_006349102.1| - 1.3e-10 40.6 0.0 7.7e-05 21.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|389846863|ref|YP_006349102.1| - 8.1e-10 38.6 0.0 0.0014 18.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|389846863|ref|YP_006349102.1| - 3.2e-09 36.9 0.1 0.00081 19.3 0.0 3.1 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|389846863|ref|YP_006349102.1| - 1.2e-08 34.2 0.0 0.00097 18.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|389846863|ref|YP_006349102.1| - 2.2e-08 33.7 0.1 0.0027 17.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|389846863|ref|YP_006349102.1| - 7.4e-08 32.7 0.0 0.012 15.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|389846863|ref|YP_006349102.1| - 3.8e-07 30.2 0.0 0.012 15.7 0.0 3.0 3 0 0 3 3 2 2 RNA helicase CDC48_2 PF02933.12 gi|389846863|ref|YP_006349102.1| - 5.1e-07 29.2 0.2 1.3e-06 27.8 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activat PF00158.21 gi|389846863|ref|YP_006349102.1| - 8.4e-07 28.6 0.0 0.057 12.8 0.0 3.6 4 0 0 4 4 3 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|389846863|ref|YP_006349102.1| - 1.3e-06 28.0 0.0 0.043 13.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|389846863|ref|YP_006349102.1| - 1.3e-06 27.7 0.1 0.056 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|389846863|ref|YP_006349102.1| - 1.3e-06 28.4 0.0 0.0098 15.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|389846863|ref|YP_006349102.1| - 5.7e-06 26.0 1.7 0.28 10.8 0.1 3.9 4 0 0 4 4 4 2 NACHT domain ABC_tran PF00005.22 gi|389846863|ref|YP_006349102.1| - 9.5e-06 25.9 0.0 0.083 13.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|389846863|ref|YP_006349102.1| - 9.7e-06 24.9 0.3 0.096 11.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.1 gi|389846863|ref|YP_006349102.1| - 1.3e-05 24.7 3.9 0.078 12.3 0.1 3.8 2 2 1 3 3 3 2 AAA domain AAA_11 PF13086.1 gi|389846863|ref|YP_006349102.1| - 3.3e-05 23.5 0.0 0.26 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|389846863|ref|YP_006349102.1| - 5.2e-05 22.3 0.0 0.13 11.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|389846863|ref|YP_006349102.1| - 7.2e-05 21.7 0.0 0.12 11.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.12 gi|389846863|ref|YP_006349102.1| - 9.5e-05 21.3 0.1 0.34 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|389846863|ref|YP_006349102.1| - 0.00022 20.8 0.1 0.42 10.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|389846863|ref|YP_006349102.1| - 0.00025 20.6 2.6 0.55 9.7 0.0 3.3 4 0 0 4 4 2 2 AAA domain ResIII PF04851.10 gi|389846863|ref|YP_006349102.1| - 0.00025 20.9 0.0 0.55 10.0 0.0 2.6 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit CPT PF07931.7 gi|389846863|ref|YP_006349102.1| - 0.00027 20.5 0.0 1.2 8.7 0.0 3.4 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein T2SE PF00437.15 gi|389846863|ref|YP_006349102.1| - 0.00033 19.6 0.4 0.85 8.4 0.0 3.4 3 0 0 3 3 3 1 Type II/IV secretion system protein KaiC PF06745.8 gi|389846863|ref|YP_006349102.1| - 0.00057 19.0 0.0 0.68 8.9 0.0 2.6 2 0 0 2 2 2 2 KaiC Viral_helicase1 PF01443.13 gi|389846863|ref|YP_006349102.1| - 0.0006 19.4 0.0 1.1 8.7 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|389846863|ref|YP_006349102.1| - 0.00066 19.5 0.0 1.3 8.8 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase DUF815 PF05673.8 gi|389846863|ref|YP_006349102.1| - 0.0012 17.8 0.0 0.57 9.0 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) Torsin PF06309.6 gi|389846863|ref|YP_006349102.1| - 0.0017 18.2 0.0 1.6 8.6 0.0 2.5 2 0 0 2 2 2 1 Torsin Cytidylate_kin2 PF13189.1 gi|389846863|ref|YP_006349102.1| - 0.0029 17.5 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family Arch_ATPase PF01637.13 gi|389846863|ref|YP_006349102.1| - 0.0037 17.0 0.0 6.9 6.2 0.0 3.4 2 2 0 2 2 2 0 Archaeal ATPase AAA_24 PF13479.1 gi|389846863|ref|YP_006349102.1| - 0.0082 15.7 0.3 3.7 7.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|389846863|ref|YP_006349102.1| - 0.012 15.3 0.7 2.2 7.9 0.1 3.2 2 2 0 2 2 2 0 NTPase PAS_2 PF08446.6 gi|389846863|ref|YP_006349102.1| - 0.033 14.6 0.0 13 6.2 0.0 2.6 2 0 0 2 2 2 0 PAS fold ATP-synt_ab PF00006.20 gi|389846863|ref|YP_006349102.1| - 0.033 13.6 0.0 6.1 6.2 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Bac_DnaA PF00308.13 gi|389846863|ref|YP_006349102.1| - 0.079 12.5 0.0 15 5.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein SRPRB PF09439.5 gi|389846863|ref|YP_006349102.1| - 0.15 11.2 0.0 3.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_23 PF13476.1 gi|389846863|ref|YP_006349102.1| - 0.16 12.3 0.1 31 4.7 0.0 2.8 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|389846863|ref|YP_006349102.1| - 0.17 11.0 0.0 9.1 5.3 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|389846863|ref|YP_006349102.1| - 0.19 10.6 0.0 4.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|389846863|ref|YP_006349102.1| - 0.25 10.7 1.8 30 4.0 0.0 3.5 2 2 2 4 4 4 0 DEAD/DEAH box helicase Rad17 PF03215.10 gi|389846863|ref|YP_006349102.1| - 0.26 9.9 0.0 14 4.2 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Methyltransf_11 PF08241.7 gi|389846864|ref|YP_006349103.1| - 3.8e-08 33.7 0.0 5.6e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846864|ref|YP_006349103.1| - 1.6e-07 31.0 0.0 2.2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846864|ref|YP_006349103.1| - 5.9e-07 30.0 0.1 9.5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846864|ref|YP_006349103.1| - 1.4e-06 28.0 0.0 2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846864|ref|YP_006349103.1| - 0.00018 21.5 0.2 0.00024 21.1 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389846864|ref|YP_006349103.1| - 0.00018 21.7 0.1 0.00028 21.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389846864|ref|YP_006349103.1| - 0.00059 19.2 0.0 0.00086 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|389846864|ref|YP_006349103.1| - 0.0016 18.9 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|389846864|ref|YP_006349103.1| - 0.0017 17.5 0.0 0.0025 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|389846864|ref|YP_006349103.1| - 0.048 12.8 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB ADH_zinc_N PF00107.21 gi|389846864|ref|YP_006349103.1| - 0.076 12.5 0.1 0.19 11.2 0.1 1.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TPMT PF05724.6 gi|389846864|ref|YP_006349103.1| - 0.11 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) TrkA_N PF02254.13 gi|389846864|ref|YP_006349103.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Ubie_methyltran PF01209.13 gi|389846864|ref|YP_006349103.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SpoIIAA-like PF11964.3 gi|389846865|ref|YP_006349104.1| - 0.057 13.6 0.4 0.13 12.5 0.2 1.7 1 1 0 1 1 1 0 SpoIIAA-like HTH_20 PF12840.2 gi|389846866|ref|YP_006349105.1| - 7e-12 44.9 0.2 1e-11 44.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389846866|ref|YP_006349105.1| - 2.5e-07 30.2 0.0 3.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|389846866|ref|YP_006349105.1| - 7.4e-07 28.7 0.1 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389846866|ref|YP_006349105.1| - 1.9e-06 27.4 0.0 2.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|389846866|ref|YP_006349105.1| - 1.7e-05 24.4 0.4 8.4e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|389846866|ref|YP_006349105.1| - 3e-05 23.3 0.0 4.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|389846866|ref|YP_006349105.1| - 3.1e-05 23.9 0.0 4.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|389846866|ref|YP_006349105.1| - 0.00029 20.7 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|389846866|ref|YP_006349105.1| - 0.00038 19.9 0.1 0.00046 19.6 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|389846866|ref|YP_006349105.1| - 0.00053 20.2 0.0 0.00084 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|389846866|ref|YP_006349105.1| - 0.0018 18.0 0.2 0.0027 17.4 0.2 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|389846866|ref|YP_006349105.1| - 0.0032 17.0 0.0 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF2250 PF10007.4 gi|389846866|ref|YP_006349105.1| - 0.0064 16.3 0.5 0.039 13.8 0.3 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|389846866|ref|YP_006349105.1| - 0.007 16.1 0.0 0.014 15.1 0.0 1.5 2 0 0 2 2 1 1 B-block binding subunit of TFIIIC HTH_12 PF08461.5 gi|389846866|ref|YP_006349105.1| - 0.046 13.4 0.2 0.093 12.4 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|389846866|ref|YP_006349105.1| - 0.065 12.8 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|389846866|ref|YP_006349105.1| - 0.081 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|389846866|ref|YP_006349105.1| - 0.087 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DEAD_assoc PF08494.6 gi|389846868|ref|YP_006349107.1| - 6.1e-40 136.9 0.0 1.2e-39 136.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|389846868|ref|YP_006349107.1| - 4.1e-30 104.5 0.0 8.8e-29 100.1 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|389846868|ref|YP_006349107.1| - 9.8e-18 63.7 0.0 1.1e-16 60.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|389846868|ref|YP_006349107.1| - 8.3e-09 35.5 0.0 1.6e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|389846868|ref|YP_006349107.1| - 3.1e-06 26.2 0.0 5.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|389846868|ref|YP_006349107.1| - 0.00019 20.9 0.1 0.00083 18.8 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389846868|ref|YP_006349107.1| - 0.00056 19.5 0.0 0.011 15.4 0.0 2.8 2 0 0 2 2 2 1 Part of AAA domain Zn-ribbon_8 PF09723.5 gi|389846868|ref|YP_006349107.1| - 0.011 15.6 0.5 0.021 14.7 0.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_11 PF13086.1 gi|389846868|ref|YP_006349107.1| - 0.034 13.7 0.0 0.26 10.8 0.0 2.3 2 1 1 3 3 3 0 AAA domain zf-ribbon_3 PF13248.1 gi|389846868|ref|YP_006349107.1| - 0.13 11.4 0.3 0.31 10.2 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain AAA_22 PF13401.1 gi|389846868|ref|YP_006349107.1| - 0.42 10.7 2.2 3 7.9 0.4 3.1 3 1 0 3 3 3 0 AAA domain MFS_Mycoplasma PF07672.8 gi|389846870|ref|YP_006349109.1| - 0.033 13.3 0.2 0.039 13.1 0.1 1.3 1 1 0 1 1 1 0 Mycoplasma MFS transporter DUF4149 PF13664.1 gi|389846870|ref|YP_006349109.1| - 0.091 12.8 1.8 0.23 11.5 0.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Metallophos_2 PF12850.2 gi|389846871|ref|YP_006349110.1| - 2.1e-06 27.6 0.2 3.1e-06 27.1 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|389846871|ref|YP_006349110.1| - 0.0011 18.4 0.5 0.02 14.3 0.0 2.2 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Trypan_PARP PF05887.6 gi|389846872|ref|YP_006349111.1| - 3.6 7.3 128.0 0.15 11.8 22.2 5.1 1 1 2 3 3 3 0 Procyclic acidic repetitive protein (PARP) tRNA_anti-codon PF01336.20 gi|389846873|ref|YP_006349112.1| - 6.9e-06 25.8 1.4 1.7 8.5 0.1 4.1 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain DUF427 PF04248.7 gi|389846874|ref|YP_006349113.1| - 0.12 12.0 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF427) Glycos_transf_1 PF00534.15 gi|662859440|ref|YP_006349114.2| - 6.7e-29 100.4 0.0 1.2e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|662859440|ref|YP_006349114.2| - 1.1e-17 64.4 0.0 4.8e-17 62.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|662859440|ref|YP_006349114.2| - 1.4e-13 51.3 0.0 2.6e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|662859440|ref|YP_006349114.2| - 9.2e-06 25.4 0.0 7e-05 22.6 0.0 2.1 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|662859440|ref|YP_006349114.2| - 3.1e-05 23.5 0.0 0.18 11.2 0.0 3.1 2 1 0 3 3 3 2 Starch synthase catalytic domain Death PF00531.17 gi|662859440|ref|YP_006349114.2| - 0.057 13.1 0.1 4 7.2 0.0 2.4 1 1 1 2 2 2 0 Death domain Glyco_trans_1_2 PF13524.1 gi|662859440|ref|YP_006349114.2| - 0.074 13.3 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 RibD_C PF01872.12 gi|389846876|ref|YP_006349115.1| - 9.5e-51 172.2 0.2 1e-50 172.1 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.20 gi|389846876|ref|YP_006349115.1| - 0.078 12.2 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Thioredoxin PF00085.15 gi|389846877|ref|YP_006349116.1| - 3.3e-27 94.1 0.0 3.7e-27 94.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389846877|ref|YP_006349116.1| - 9.4e-09 35.4 0.1 7.7e-08 32.5 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|389846877|ref|YP_006349116.1| - 6.3e-05 22.9 0.0 9.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|389846877|ref|YP_006349116.1| - 0.00029 20.9 0.0 0.00089 19.3 0.0 1.7 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|389846877|ref|YP_006349116.1| - 0.0016 18.1 0.1 0.0022 17.7 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|389846877|ref|YP_006349116.1| - 0.0021 17.6 0.0 0.0024 17.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|389846877|ref|YP_006349116.1| - 0.0055 16.3 0.0 0.0062 16.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family DIM1 PF02966.11 gi|389846877|ref|YP_006349116.1| - 0.0068 15.9 0.3 0.017 14.6 0.2 1.6 1 1 0 1 1 1 1 Mitosis protein DIM1 DUF836 PF05768.9 gi|389846877|ref|YP_006349116.1| - 0.023 14.9 0.1 0.035 14.3 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Sigma70_r3 PF04539.11 gi|389846877|ref|YP_006349116.1| - 0.025 14.4 3.2 0.16 11.8 0.3 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 Thioredoxin_4 PF13462.1 gi|389846877|ref|YP_006349116.1| - 0.051 13.5 0.2 3.6 7.5 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Cupin_2 PF07883.6 gi|389846878|ref|YP_006349117.1| - 8.3e-08 31.6 4.2 1.3e-07 31.0 2.9 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|389846878|ref|YP_006349117.1| - 0.0089 15.3 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1479 PF07350.7 gi|389846878|ref|YP_006349117.1| - 0.11 10.9 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) Cupin_1 PF00190.17 gi|389846878|ref|YP_006349117.1| - 0.12 11.7 0.4 0.16 11.3 0.3 1.1 1 0 0 1 1 1 0 Cupin NifU PF01106.12 gi|662859441|ref|YP_006349118.2| - 3.3e-09 36.4 0.0 3.9e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain SBDS PF01172.13 gi|389846880|ref|YP_006349119.1| - 1.5e-25 88.7 0.0 2.4e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|389846880|ref|YP_006349119.1| - 1.8e-19 69.6 0.0 2.8e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain YbjN PF10722.4 gi|389846880|ref|YP_006349119.1| - 0.13 12.2 0.5 17 5.4 0.0 2.3 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator FUN14 PF04930.10 gi|389846881|ref|YP_006349120.1| - 2.5e-18 66.2 4.2 3.1e-18 65.8 2.9 1.0 1 0 0 1 1 1 1 FUN14 family Tmemb_14 PF03647.8 gi|389846881|ref|YP_006349120.1| - 6.2 7.2 7.2 0.65 10.4 0.7 2.1 2 0 0 2 2 2 0 Transmembrane proteins 14C Rick_17kDa_Anti PF05433.10 gi|389846881|ref|YP_006349120.1| - 7.8 6.2 10.2 5.9 6.6 3.4 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain MMR_HSR1 PF01926.18 gi|389846882|ref|YP_006349121.1| - 5.5e-19 68.2 0.0 1.1e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|389846882|ref|YP_006349121.1| - 2.3e-12 46.7 0.0 5.8e-12 45.4 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|389846882|ref|YP_006349121.1| - 1.1e-10 41.5 0.0 2.3e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|389846882|ref|YP_006349121.1| - 1.9e-05 24.2 0.4 0.00064 19.2 0.1 2.3 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|389846882|ref|YP_006349121.1| - 7.3e-05 22.0 0.7 0.16 11.2 0.0 3.1 4 0 0 4 4 4 2 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|389846882|ref|YP_006349121.1| - 0.00026 20.5 0.0 0.094 12.2 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|389846882|ref|YP_006349121.1| - 0.0013 19.0 0.1 0.016 15.5 0.0 2.8 2 1 1 3 3 3 1 AAA domain Arf PF00025.16 gi|389846882|ref|YP_006349121.1| - 0.0056 15.9 0.6 2.2 7.5 0.0 2.6 2 1 1 3 3 3 2 ADP-ribosylation factor family Miro PF08477.8 gi|389846882|ref|YP_006349121.1| - 0.0086 16.5 0.0 0.026 15.0 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|389846882|ref|YP_006349121.1| - 0.024 14.3 0.1 0.1 12.2 0.0 2.3 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|389846882|ref|YP_006349121.1| - 0.03 15.1 4.8 0.066 14.0 0.0 3.2 2 2 1 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|389846882|ref|YP_006349121.1| - 0.039 14.1 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|389846882|ref|YP_006349121.1| - 0.041 13.4 0.1 3 7.3 0.0 2.3 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|389846882|ref|YP_006349121.1| - 0.051 12.9 1.0 0.23 10.8 0.0 2.6 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|389846882|ref|YP_006349121.1| - 0.12 12.1 0.1 2 8.1 0.1 2.5 1 1 0 1 1 1 0 Dynamin family AAA_23 PF13476.1 gi|389846882|ref|YP_006349121.1| - 1.1 9.5 4.1 8.2 6.6 0.0 2.4 1 1 1 2 2 2 0 AAA domain A2M_N PF01835.14 gi|389846883|ref|YP_006349122.1| - 0.0081 16.3 8.0 0.41 10.9 0.0 5.2 5 1 0 5 5 5 1 MG2 domain FixG_C PF11614.3 gi|389846883|ref|YP_006349122.1| - 0.34 11.0 0.0 0.34 11.0 0.0 5.1 6 0 0 6 6 6 0 IG-like fold at C-terminal of FixG, putative oxidoreductase MoaC PF01967.16 gi|389846884|ref|YP_006349123.1| - 6e-45 152.2 1.0 7.1e-45 152.0 0.7 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|389846885|ref|YP_006349124.1| - 9.8e-50 169.0 0.6 2.2e-49 167.9 0.5 1.5 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.10 gi|389846885|ref|YP_006349124.1| - 3.7e-44 150.2 0.8 3.7e-44 150.2 0.6 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|389846885|ref|YP_006349124.1| - 2.7e-06 26.7 0.1 4.9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.11 gi|662859442|ref|YP_006349125.2| - 1.3e-36 126.0 45.3 1.3e-36 126.0 31.4 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF2636 PF11120.3 gi|662859442|ref|YP_006349125.2| - 1.6 8.3 5.5 25 4.4 0.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2636) OATP PF03137.15 gi|662859442|ref|YP_006349125.2| - 3.1 5.7 7.9 0.1 10.6 0.9 1.8 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HTH_20 PF12840.2 gi|389846887|ref|YP_006349126.1| - 3.9e-11 42.5 0.2 5.1e-11 42.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389846887|ref|YP_006349126.1| - 9.8e-07 28.3 0.1 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|389846887|ref|YP_006349126.1| - 2e-06 27.0 0.0 2.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|389846887|ref|YP_006349126.1| - 0.00033 20.3 0.0 0.00063 19.3 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|389846887|ref|YP_006349126.1| - 0.013 14.9 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit MarR_2 PF12802.2 gi|389846887|ref|YP_006349126.1| - 0.017 14.7 0.2 0.035 13.7 0.1 1.5 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|389846887|ref|YP_006349126.1| - 0.048 13.7 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|389846887|ref|YP_006349126.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_45 PF14947.1 gi|389846887|ref|YP_006349126.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF742 PF05331.6 gi|389846887|ref|YP_006349126.1| - 0.13 11.8 0.1 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_11 PF08279.7 gi|389846887|ref|YP_006349126.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF3860 PF12976.2 gi|389846887|ref|YP_006349126.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) FaeA PF04703.7 gi|389846887|ref|YP_006349126.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Helicase_C_2 PF13307.1 gi|389846888|ref|YP_006349127.1| - 1.1e-31 109.9 0.0 1.2e-30 106.6 0.0 2.1 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|389846888|ref|YP_006349127.1| - 2.4e-08 33.5 0.0 6.5e-08 32.1 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|389846888|ref|YP_006349127.1| - 0.00017 21.2 0.0 0.00067 19.3 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|389846888|ref|YP_006349127.1| - 0.00041 19.6 0.0 0.001 18.3 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.10 gi|389846888|ref|YP_006349127.1| - 0.00092 19.0 0.0 0.014 15.2 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|389846888|ref|YP_006349127.1| - 0.0034 17.0 0.0 0.042 13.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|389846888|ref|YP_006349127.1| - 0.0052 15.8 0.0 0.043 12.7 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|389846888|ref|YP_006349127.1| - 0.018 14.5 0.0 2 7.8 0.0 2.5 3 0 0 3 3 3 0 DEAD/DEAH box helicase CK2S PF15011.1 gi|389846888|ref|YP_006349127.1| - 0.16 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Casein Kinase 2 substrate zf-ribbon_3 PF13248.1 gi|389846889|ref|YP_006349128.1| - 0.056 12.6 0.6 0.092 11.9 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF2116 PF09889.4 gi|389846889|ref|YP_006349128.1| - 0.075 12.8 3.6 0.64 9.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FCS PF06467.9 gi|389846889|ref|YP_006349128.1| - 0.13 11.8 1.3 0.33 10.6 0.9 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif GFA PF04828.9 gi|389846889|ref|YP_006349128.1| - 0.15 12.0 1.0 0.71 9.8 0.7 1.8 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-dskA_traR PF01258.12 gi|389846889|ref|YP_006349128.1| - 0.24 11.1 4.4 0.65 9.7 0.1 2.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger MutS_V PF00488.16 gi|389846891|ref|YP_006349130.1| - 7.8e-08 32.0 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.1 gi|389846891|ref|YP_006349130.1| - 0.0024 17.7 0.0 0.0062 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|389846891|ref|YP_006349130.1| - 0.0034 17.3 3.3 0.011 15.6 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|389846891|ref|YP_006349130.1| - 0.017 15.0 0.0 0.055 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|389846891|ref|YP_006349130.1| - 0.095 12.7 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif AAA_29 PF13555.1 gi|389846891|ref|YP_006349130.1| - 0.14 11.7 0.2 0.35 10.4 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0058 PF01893.11 gi|389846892|ref|YP_006349131.1| - 3.5e-12 46.1 0.0 3.8e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 PAS_9 PF13426.1 gi|389846893|ref|YP_006349132.1| - 2.6e-29 101.6 0.1 7.9e-18 64.7 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|389846893|ref|YP_006349132.1| - 5e-23 81.2 2.3 1.7e-11 44.0 0.1 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|389846893|ref|YP_006349132.1| - 1e-20 73.5 0.0 2.6e-20 72.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|389846893|ref|YP_006349132.1| - 4e-17 63.0 0.5 3.3e-16 60.1 0.1 2.6 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|389846893|ref|YP_006349132.1| - 1.2e-11 44.4 0.2 2.7e-08 33.5 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|389846893|ref|YP_006349132.1| - 9e-08 31.9 0.1 2.6e-07 30.4 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|389846893|ref|YP_006349132.1| - 7.5e-05 22.8 0.1 0.00025 21.1 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|389846893|ref|YP_006349132.1| - 0.00027 21.0 0.0 0.0014 18.6 0.0 2.3 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|389846893|ref|YP_006349132.1| - 0.0017 18.0 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|389846893|ref|YP_006349132.1| - 0.0053 16.5 0.3 0.17 11.7 0.1 2.7 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|389846893|ref|YP_006349132.1| - 0.017 15.3 0.0 0.33 11.2 0.0 2.7 2 0 0 2 2 2 0 PAS domain DASH_Duo1 PF08651.5 gi|389846893|ref|YP_006349132.1| - 0.095 12.2 1.4 1.3 8.6 0.0 3.0 3 0 0 3 3 3 0 DASH complex subunit Duo1 HTH_10 PF04967.7 gi|662859443|ref|YP_006349133.2| - 1.2e-20 72.8 0.0 3.2e-20 71.4 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|662859443|ref|YP_006349133.2| - 4.7e-17 61.9 0.7 1.1e-16 60.8 0.5 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|662859443|ref|YP_006349133.2| - 4.1e-08 33.8 2.3 1.3e-07 32.2 0.1 2.8 3 1 0 3 3 2 1 GAF domain HalX PF08663.5 gi|662859443|ref|YP_006349133.2| - 1.2e-06 28.3 4.3 4e-06 26.7 3.0 2.0 1 0 0 1 1 1 1 HalX domain GAF_3 PF13492.1 gi|662859443|ref|YP_006349133.2| - 3.8e-06 27.0 0.3 4.1e-05 23.6 0.0 2.8 3 0 0 3 3 3 1 GAF domain GAF PF01590.21 gi|662859443|ref|YP_006349133.2| - 7.8e-06 26.0 0.6 2.6e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 GAF domain GerE PF00196.14 gi|662859443|ref|YP_006349133.2| - 0.00074 18.7 0.0 0.0036 16.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|662859443|ref|YP_006349133.2| - 0.0044 16.3 0.0 0.031 13.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|662859443|ref|YP_006349133.2| - 0.013 15.0 0.0 0.05 13.1 0.0 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|662859443|ref|YP_006349133.2| - 0.035 13.4 0.0 0.066 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ank_2 PF12796.2 gi|662859443|ref|YP_006349133.2| - 0.046 14.0 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) HTH_5 PF01022.15 gi|662859443|ref|YP_006349133.2| - 0.063 12.9 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.1 gi|662859443|ref|YP_006349133.2| - 0.1 12.3 0.0 0.58 9.9 0.0 2.2 2 0 0 2 2 2 0 HTH domain Ank_4 PF13637.1 gi|662859443|ref|YP_006349133.2| - 0.14 12.6 0.1 0.74 10.4 0.0 2.2 2 0 0 2 2 2 0 Ankyrin repeats (many copies) HTH_20 PF12840.2 gi|662859443|ref|YP_006349133.2| - 0.17 11.7 3.3 0.23 11.2 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Response_reg PF00072.19 gi|389846895|ref|YP_006349134.1| - 2.7e-15 56.3 0.0 3.5e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Zn-ribbon_8 PF09723.5 gi|389846896|ref|YP_006349135.1| - 0.042 13.8 3.1 2.5 8.1 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Hormone_6 PF00236.13 gi|389846896|ref|YP_006349135.1| - 0.065 13.0 1.3 0.15 11.8 0.1 1.9 1 1 1 2 2 2 0 Glycoprotein hormone CpXC PF14353.1 gi|389846896|ref|YP_006349135.1| - 0.1 12.5 1.5 0.12 12.3 1.0 1.1 1 0 0 1 1 1 0 CpXC protein Lar_restr_allev PF14354.1 gi|389846896|ref|YP_006349135.1| - 0.12 12.6 1.7 0.21 11.9 1.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DAN PF03045.10 gi|389846896|ref|YP_006349135.1| - 0.2 11.0 2.7 0.25 10.7 1.8 1.2 1 0 0 1 1 1 0 DAN domain zinc_ribbon_4 PF13717.1 gi|389846896|ref|YP_006349135.1| - 0.26 11.0 3.3 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|389846896|ref|YP_006349135.1| - 0.45 10.1 3.7 3.6 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|389846896|ref|YP_006349135.1| - 0.47 10.3 4.6 7.5 6.4 3.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|389846896|ref|YP_006349135.1| - 3.6 6.8 6.0 28 4.0 0.4 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-CSL PF05207.8 gi|389846896|ref|YP_006349135.1| - 3.8 7.0 5.5 13 5.3 0.5 2.1 1 1 0 2 2 2 0 CSL zinc finger zf-DNL PF05180.7 gi|389846896|ref|YP_006349135.1| - 4.2 7.1 5.1 32 4.3 0.1 2.8 1 1 1 3 3 3 0 DNL zinc finger TrmB PF01978.14 gi|662859444|ref|YP_006349136.2| - 1.1e-15 57.0 0.0 1.4e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|662859444|ref|YP_006349136.2| - 8.9e-07 29.0 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.2 gi|662859444|ref|YP_006349136.2| - 2.7e-05 23.7 0.1 4.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|662859444|ref|YP_006349136.2| - 0.00059 19.3 0.1 0.001 18.6 0.1 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|662859444|ref|YP_006349136.2| - 0.00074 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|662859444|ref|YP_006349136.2| - 0.0011 18.7 0.2 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|662859444|ref|YP_006349136.2| - 0.0012 18.7 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family MarR PF01047.17 gi|662859444|ref|YP_006349136.2| - 0.0012 18.4 0.1 0.0027 17.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|662859444|ref|YP_006349136.2| - 0.0032 17.7 0.0 0.0048 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.8 gi|662859444|ref|YP_006349136.2| - 0.004 16.7 0.0 0.0083 15.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_24 PF13412.1 gi|662859444|ref|YP_006349136.2| - 0.0057 16.0 0.1 0.029 13.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|662859444|ref|YP_006349136.2| - 0.0069 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|662859444|ref|YP_006349136.2| - 0.014 15.1 0.2 0.033 13.9 0.1 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|662859444|ref|YP_006349136.2| - 0.018 14.8 0.3 0.034 13.9 0.2 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|662859444|ref|YP_006349136.2| - 0.026 13.9 0.1 0.044 13.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|662859444|ref|YP_006349136.2| - 0.032 13.8 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UMPH-1 PF05822.7 gi|662859444|ref|YP_006349136.2| - 0.047 13.0 0.1 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_23 PF13384.1 gi|662859444|ref|YP_006349136.2| - 0.062 12.9 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|662859444|ref|YP_006349136.2| - 0.07 13.2 0.0 0.098 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TauE PF01925.14 gi|389846898|ref|YP_006349137.1| - 3.4e-39 134.7 23.2 3.4e-39 134.7 16.1 2.0 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE TcpE PF12648.2 gi|389846898|ref|YP_006349137.1| - 6.9 6.8 7.5 9.1 6.4 0.4 2.7 2 0 0 2 2 2 0 TcpE family Sulf_transp PF04143.9 gi|389846899|ref|YP_006349138.1| - 8.1e-10 38.5 7.4 8.1e-10 38.5 5.2 2.7 3 0 0 3 3 3 2 Sulphur transport DUF2162 PF09930.4 gi|389846899|ref|YP_006349138.1| - 0.18 10.9 1.5 1.8 7.6 0.7 2.2 2 0 0 2 2 2 0 Predicted transporter (DUF2162) DUF4341 PF14241.1 gi|389846900|ref|YP_006349139.1| - 6.4e-15 54.5 6.8 9.1e-14 50.9 1.7 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|389846900|ref|YP_006349139.1| - 5.5e-11 42.3 4.7 5.5e-11 42.3 3.3 3.0 3 1 0 3 3 3 2 Sulphur transport DUF4149 PF13664.1 gi|389846900|ref|YP_006349139.1| - 0.24 11.4 3.2 0.31 11.1 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) Lactamase_B PF00753.22 gi|389846901|ref|YP_006349140.1| - 5.5e-21 75.1 8.6 5.5e-21 75.1 6.0 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|389846901|ref|YP_006349140.1| - 1.8e-09 37.9 0.0 3.2e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|389846901|ref|YP_006349140.1| - 0.03 14.0 0.1 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|389846901|ref|YP_006349140.1| - 0.032 13.7 0.8 0.074 12.5 0.6 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain TusA PF01206.12 gi|389846902|ref|YP_006349141.1| - 2.1e-17 62.4 0.0 2.3e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|389846902|ref|YP_006349141.1| - 6.3e-05 22.4 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|389846903|ref|YP_006349142.1| - 7.9e-55 184.7 1.3 1.1e-54 184.2 0.9 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|389846903|ref|YP_006349142.1| - 6.3e-06 26.2 0.2 8.9e-05 22.5 0.0 2.4 2 1 0 2 2 2 1 DsrE/DsrF-like family DivIC PF04977.10 gi|389846903|ref|YP_006349142.1| - 0.0084 15.5 0.1 0.02 14.3 0.1 1.5 1 0 0 1 1 1 1 Septum formation initiator DUF1192 PF06698.6 gi|389846903|ref|YP_006349142.1| - 0.0092 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1192) TMF_DNA_bd PF12329.3 gi|389846903|ref|YP_006349142.1| - 0.089 12.6 0.6 0.24 11.2 0.0 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding AIM24 PF01987.12 gi|389846904|ref|YP_006349143.1| - 4e-48 163.7 0.4 4.5e-48 163.5 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Usp PF00582.21 gi|389846905|ref|YP_006349144.1| - 1.8e-06 28.2 1.5 2.8e-06 27.5 1.1 1.3 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|389846905|ref|YP_006349144.1| - 0.0073 16.0 0.3 0.031 13.9 0.2 1.9 1 1 0 1 1 1 1 Electron transfer flavoprotein domain DUF2840 PF11000.3 gi|389846905|ref|YP_006349144.1| - 0.041 13.4 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2840) Acyl-CoA_dh_1 PF00441.19 gi|389846906|ref|YP_006349145.1| - 1.1e-43 148.9 1.6 2.2e-43 147.9 1.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389846906|ref|YP_006349145.1| - 7.7e-26 90.8 2.7 2e-25 89.5 1.9 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389846906|ref|YP_006349145.1| - 2.3e-20 71.8 0.4 5.8e-20 70.5 0.3 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|389846906|ref|YP_006349145.1| - 3.5e-17 62.8 1.6 3.5e-17 62.8 1.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|389846906|ref|YP_006349145.1| - 3.8e-05 23.2 0.1 0.00031 20.2 0.1 2.2 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|662859445|ref|YP_006349146.2| - 7.3e-90 301.3 0.0 8.5e-90 301.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|662859445|ref|YP_006349146.2| - 7.2e-20 71.7 0.2 1.7e-19 70.5 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|662859446|ref|YP_006349147.2| - 1.8e-85 286.8 0.2 2.4e-85 286.4 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|662859446|ref|YP_006349147.2| - 1.1e-13 51.9 0.2 4e-13 50.0 0.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Glyoxalase_4 PF13669.1 gi|389846909|ref|YP_006349148.1| - 1.5e-18 66.8 0.2 1.7e-18 66.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389846909|ref|YP_006349148.1| - 3.1e-09 37.3 0.1 3.4e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|389846909|ref|YP_006349148.1| - 1.3e-07 31.7 0.4 1.5e-07 31.5 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389846909|ref|YP_006349148.1| - 1.9e-06 27.9 0.3 2.1e-06 27.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YbjQ_1 PF01906.12 gi|389846910|ref|YP_006349149.1| - 6.4e-37 126.1 5.8 7.1e-37 126.0 4.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|389846910|ref|YP_006349149.1| - 0.0034 17.4 1.4 0.0049 16.9 0.1 1.8 2 0 0 2 2 2 1 Selenium binding protein APH PF01636.18 gi|389846911|ref|YP_006349150.1| - 6.7e-15 55.4 1.1 8.5e-15 55.1 0.8 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|389846911|ref|YP_006349150.1| - 3.2e-06 26.3 0.0 6.6e-06 25.3 0.0 1.5 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.6 gi|389846911|ref|YP_006349150.1| - 0.013 14.1 0.0 0.018 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) EcKinase PF02958.15 gi|389846911|ref|YP_006349150.1| - 0.038 13.1 0.0 0.052 12.6 0.0 1.1 1 0 0 1 1 1 0 Ecdysteroid kinase MM_CoA_mutase PF01642.17 gi|389846912|ref|YP_006349151.1| - 4.7e-207 688.2 2.5 5.4e-207 688.0 1.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase CAF-1_p150 PF11600.3 gi|389846912|ref|YP_006349151.1| - 0.26 10.6 5.1 0.43 9.9 3.6 1.3 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal Methyltransf_3 PF01596.12 gi|389846913|ref|YP_006349152.1| - 2.9e-24 85.2 0.0 3.9e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|389846913|ref|YP_006349152.1| - 4.2e-15 56.4 0.7 8.7e-15 55.4 0.5 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846913|ref|YP_006349152.1| - 9.9e-10 38.9 0.2 1.7e-09 38.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846913|ref|YP_006349152.1| - 6.1e-09 35.9 0.1 1.1e-08 35.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846913|ref|YP_006349152.1| - 1.4e-05 24.7 0.0 1.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|389846913|ref|YP_006349152.1| - 0.018 14.5 0.0 0.038 13.5 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Peptidase_MA_2 PF13485.1 gi|389846913|ref|YP_006349152.1| - 0.052 13.5 0.9 0.5 10.4 0.2 2.5 2 1 1 3 3 3 0 Peptidase MA superfamily NAC PF01849.13 gi|662859447|ref|YP_006349153.2| - 7.3e-19 67.0 0.8 1.1e-18 66.5 0.6 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|662859447|ref|YP_006349153.2| - 0.0003 20.5 0.1 0.0003 20.5 0.1 2.5 3 0 0 3 3 3 1 UBA/TS-N domain UBA_4 PF14555.1 gi|662859447|ref|YP_006349153.2| - 0.03 13.8 0.1 0.061 12.8 0.1 1.4 1 0 0 1 1 1 0 UBA-like domain DUF3867 PF12983.2 gi|662859447|ref|YP_006349153.2| - 0.051 13.5 0.1 0.073 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) GCD14 PF08704.5 gi|389846915|ref|YP_006349154.1| - 1.8e-17 63.6 0.0 2.6e-14 53.3 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|389846915|ref|YP_006349154.1| - 7.3e-14 52.3 0.1 1.1e-13 51.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846915|ref|YP_006349154.1| - 1.4e-10 41.2 0.5 4.9e-10 39.4 0.4 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389846915|ref|YP_006349154.1| - 5.7e-10 38.9 0.0 7e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389846915|ref|YP_006349154.1| - 5.3e-07 29.1 0.0 1.3e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.12 gi|389846915|ref|YP_006349154.1| - 2e-05 23.7 0.1 2.6e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|389846915|ref|YP_006349154.1| - 0.00012 21.3 0.0 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|389846915|ref|YP_006349154.1| - 0.00012 21.7 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|389846915|ref|YP_006349154.1| - 0.00013 22.7 0.2 0.00024 21.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846915|ref|YP_006349154.1| - 0.00021 21.7 0.2 0.00038 20.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846915|ref|YP_006349154.1| - 0.00059 19.5 0.0 0.0037 17.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|389846915|ref|YP_006349154.1| - 0.0012 17.9 0.0 0.0017 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|389846915|ref|YP_006349154.1| - 0.006 15.9 0.2 0.0092 15.3 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|389846915|ref|YP_006349154.1| - 0.0087 15.1 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.7 gi|389846915|ref|YP_006349154.1| - 0.016 15.6 0.1 0.025 15.0 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|389846915|ref|YP_006349154.1| - 0.032 13.4 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Cons_hypoth95 PF03602.10 gi|389846915|ref|YP_006349154.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.3 1 1 0 1 1 1 0 Conserved hypothetical protein 95 TFIIS_C PF01096.13 gi|389846917|ref|YP_006349156.1| - 9.9e-17 60.2 3.7 9.9e-17 60.2 2.5 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|389846917|ref|YP_006349156.1| - 6.1e-05 22.6 0.5 6.1e-05 22.6 0.3 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|389846917|ref|YP_006349156.1| - 0.00031 20.3 4.9 0.2 11.3 0.4 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|389846917|ref|YP_006349156.1| - 0.0006 19.5 5.5 0.37 10.6 0.1 2.6 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|389846917|ref|YP_006349156.1| - 0.0008 19.2 2.2 0.0008 19.2 1.5 2.2 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|389846917|ref|YP_006349156.1| - 0.0014 18.3 0.8 0.0014 18.3 0.6 2.3 2 1 0 2 2 2 1 Transposase zinc-ribbon domain Baculo_LEF5_C PF11792.3 gi|389846917|ref|YP_006349156.1| - 0.0092 15.3 1.4 0.0092 15.3 1.0 2.0 2 0 0 2 2 2 1 Baculoviridae late expression factor 5 C-terminal domain Tnp_zf-ribbon_2 PF13842.1 gi|389846917|ref|YP_006349156.1| - 0.034 14.5 2.5 13 6.3 0.0 3.1 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon UPF0515 PF15135.1 gi|389846917|ref|YP_006349156.1| - 0.036 13.1 0.6 0.042 12.9 0.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Prok-RING_1 PF14446.1 gi|389846917|ref|YP_006349156.1| - 0.056 13.1 5.1 0.66 9.7 0.1 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|389846917|ref|YP_006349156.1| - 0.18 11.6 0.3 0.18 11.6 0.2 2.6 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.1 gi|389846917|ref|YP_006349156.1| - 0.26 11.6 7.1 0.15 12.3 0.8 2.3 2 1 0 2 2 2 0 Restriction alleviation protein Lar Churchill PF06573.6 gi|389846917|ref|YP_006349156.1| - 0.34 10.9 3.0 0.66 9.9 2.1 1.8 1 1 0 1 1 1 0 Churchill protein zinc-ribbons_6 PF07191.7 gi|389846917|ref|YP_006349156.1| - 0.75 9.6 6.3 0.7 9.7 0.9 2.4 2 1 0 2 2 2 0 zinc-ribbons zf-TFIIIC PF12660.2 gi|389846917|ref|YP_006349156.1| - 1.1 9.2 5.3 6.3 6.7 0.1 2.4 1 1 1 2 2 2 0 Putative zinc-finger of transcription factor IIIC complex Rpr2 PF04032.11 gi|389846917|ref|YP_006349156.1| - 1.1 9.1 4.9 61 3.5 3.4 2.3 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain GFA PF04828.9 gi|389846917|ref|YP_006349156.1| - 1.8 8.5 5.8 16 5.5 0.1 2.7 1 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|389846917|ref|YP_006349156.1| - 1.9 8.1 6.8 16 5.1 0.0 3.4 3 1 0 4 4 4 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|389846917|ref|YP_006349156.1| - 3.4 5.9 8.2 1.2 7.4 2.2 1.9 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) RRN7 PF11781.3 gi|389846917|ref|YP_006349156.1| - 4 7.0 8.8 8 6.0 0.3 3.5 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2082 PF09855.4 gi|389846917|ref|YP_006349156.1| - 4.8 7.1 6.0 1.7 8.5 0.6 2.7 2 2 2 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.1 gi|389846917|ref|YP_006349156.1| - 5.8 6.7 8.5 14 5.4 0.1 3.4 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.4 gi|389846917|ref|YP_006349156.1| - 6.1 6.6 11.8 2.4 7.9 0.0 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Gin PF10764.4 gi|389846917|ref|YP_006349156.1| - 6.4 6.5 6.8 2.9 7.6 0.0 3.2 4 0 0 4 4 4 0 Inhibitor of sigma-G Gin PhnA_Zn_Ribbon PF08274.7 gi|389846917|ref|YP_006349156.1| - 6.5 6.6 15.5 13 5.7 1.5 3.8 2 2 0 2 2 2 0 PhnA Zinc-Ribbon Cytochrom_c3_2 PF14537.1 gi|389846917|ref|YP_006349156.1| - 7.5 6.9 7.6 3.1 8.1 2.8 2.0 1 1 0 1 1 1 0 Cytochrome c3 DNA_ligase_ZBD PF03119.11 gi|389846917|ref|YP_006349156.1| - 7.6 6.3 8.5 12 5.7 0.3 2.8 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_5 PF14634.1 gi|389846917|ref|YP_006349156.1| - 8.5 6.2 7.5 32 4.3 1.8 2.9 2 2 1 3 3 3 0 zinc-RING finger domain DUF2296 PF10058.4 gi|389846917|ref|YP_006349156.1| - 9 6.1 6.4 9.2 6.1 1.4 2.8 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Opy2 PF09463.5 gi|389846917|ref|YP_006349156.1| - 9.5 6.4 8.2 9.1 6.4 0.2 3.2 4 0 0 4 4 3 0 Opy2 protein ECH PF00378.15 gi|662859448|ref|YP_006349158.2| - 4.7e-62 209.3 0.0 5.2e-62 209.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|662859448|ref|YP_006349158.2| - 0.00029 19.7 0.0 0.00042 19.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase PqqD PF05402.7 gi|389846920|ref|YP_006349159.1| - 0.0014 18.5 0.1 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) GntR PF00392.16 gi|389846920|ref|YP_006349159.1| - 0.048 13.1 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|389846920|ref|YP_006349159.1| - 0.064 12.9 0.1 0.16 11.7 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2576 PF10845.3 gi|389846920|ref|YP_006349159.1| - 0.17 11.0 0.5 0.5 9.5 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2576) Methyltransf_31 PF13847.1 gi|389846921|ref|YP_006349160.1| - 4.1e-16 58.9 0.0 4.4e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846921|ref|YP_006349160.1| - 1.2e-12 48.1 0.0 1.5e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389846921|ref|YP_006349160.1| - 9.3e-12 45.0 0.3 1.2e-11 44.6 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389846921|ref|YP_006349160.1| - 1.5e-11 44.8 0.1 2.2e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389846921|ref|YP_006349160.1| - 2.3e-10 40.8 0.0 3.1e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389846921|ref|YP_006349160.1| - 1.5e-08 34.5 0.0 1.9e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389846921|ref|YP_006349160.1| - 1.8e-07 30.6 0.0 2.6e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|389846921|ref|YP_006349160.1| - 6.2e-07 29.1 0.0 8.8e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|389846921|ref|YP_006349160.1| - 2.2e-06 27.9 0.0 3e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846921|ref|YP_006349160.1| - 5.5e-05 22.4 0.0 6.9e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|389846921|ref|YP_006349160.1| - 0.00013 21.1 0.0 0.00018 20.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|389846921|ref|YP_006349160.1| - 0.00064 20.5 0.1 0.00098 19.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|389846921|ref|YP_006349160.1| - 0.0024 16.9 0.0 0.026 13.5 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Met_10 PF02475.11 gi|389846921|ref|YP_006349160.1| - 0.0028 17.2 0.0 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DUF938 PF06080.7 gi|389846921|ref|YP_006349160.1| - 0.0081 15.7 0.0 0.015 14.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF938) FmrO PF07091.6 gi|389846921|ref|YP_006349160.1| - 0.037 13.0 0.0 0.046 12.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|389846921|ref|YP_006349160.1| - 0.099 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|389846921|ref|YP_006349160.1| - 0.11 11.5 0.1 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|389846921|ref|YP_006349160.1| - 0.13 11.2 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NUDIX PF00293.23 gi|389846923|ref|YP_006349162.1| - 1.9e-18 66.4 0.2 2.3e-18 66.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Ribosomal_S10 PF00338.17 gi|389846924|ref|YP_006349163.1| - 3.9e-10 39.4 0.0 4.5e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Na_H_antiporter PF03553.9 gi|389846926|ref|YP_006349165.1| - 1.5e-30 106.2 48.4 8.7e-17 61.1 15.8 2.4 2 1 0 2 2 2 2 Na+/H+ antiporter family Peptidase_M20 PF01546.23 gi|389846927|ref|YP_006349166.1| - 3.1e-19 69.2 12.1 1.3e-18 67.1 8.4 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|389846927|ref|YP_006349166.1| - 2.1e-08 33.8 0.9 4.3e-08 32.8 0.6 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain HATPase_c PF02518.21 gi|389846928|ref|YP_006349167.1| - 1.2e-19 70.0 0.0 2.2e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389846928|ref|YP_006349167.1| - 2.2e-11 43.5 1.3 6e-11 42.1 0.9 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|389846928|ref|YP_006349167.1| - 0.00039 20.1 0.0 0.00082 19.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|389846928|ref|YP_006349167.1| - 0.0037 16.9 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DAO PF01266.19 gi|389846929|ref|YP_006349168.1| - 1.6e-12 47.0 3.4 5.6e-06 25.4 0.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|389846929|ref|YP_006349168.1| - 1.2e-11 44.2 4.0 9.8e-11 41.2 2.8 2.2 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|389846929|ref|YP_006349168.1| - 3.4e-11 42.4 2.4 6.3e-07 28.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|389846929|ref|YP_006349168.1| - 3.4e-09 36.0 4.8 1.8e-05 23.7 2.6 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|389846929|ref|YP_006349168.1| - 7.5e-08 31.8 7.1 0.00045 19.4 2.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|389846929|ref|YP_006349168.1| - 3e-07 29.6 1.3 5.5e-07 28.7 0.9 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|389846929|ref|YP_006349168.1| - 5.2e-07 28.9 1.8 9.3e-06 24.8 0.1 2.9 3 1 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.1 gi|389846929|ref|YP_006349168.1| - 2e-05 24.5 1.6 2e-05 24.5 1.1 2.9 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|389846929|ref|YP_006349168.1| - 2.9e-05 24.0 2.1 2.9e-05 24.0 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389846929|ref|YP_006349168.1| - 3.1e-05 22.6 0.8 0.00034 19.2 0.5 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|389846929|ref|YP_006349168.1| - 0.00014 21.9 0.0 0.00028 20.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846929|ref|YP_006349168.1| - 0.00019 21.7 1.6 0.00046 20.5 0.8 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|389846929|ref|YP_006349168.1| - 0.00037 20.1 0.1 0.00083 19.0 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|389846929|ref|YP_006349168.1| - 0.0023 17.3 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|389846929|ref|YP_006349168.1| - 0.016 14.9 1.4 0.024 14.4 0.1 1.9 2 0 0 2 2 2 0 ThiF family FBPase PF00316.15 gi|389846929|ref|YP_006349168.1| - 0.079 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase AlaDh_PNT_C PF01262.16 gi|389846929|ref|YP_006349168.1| - 0.093 12.2 0.4 0.19 11.2 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|389846929|ref|YP_006349168.1| - 0.27 10.1 4.9 0.73 8.6 0.2 2.5 2 1 0 2 2 2 0 Lycopene cyclase protein BPD_transp_2 PF02653.11 gi|389846930|ref|YP_006349169.1| - 8.3e-35 120.0 37.2 8.3e-35 120.0 25.8 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|389846931|ref|YP_006349170.1| - 5.5e-50 169.8 29.1 5.5e-50 169.8 20.2 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|389846932|ref|YP_006349171.1| - 8.7e-46 155.6 0.0 2.4e-29 102.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|389846932|ref|YP_006349171.1| - 6.5e-13 49.3 0.1 1.2e-05 25.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389846932|ref|YP_006349171.1| - 2.8e-06 26.7 0.1 0.013 15.0 0.0 2.8 2 0 0 2 2 2 2 P-loop containing region of AAA domain Bac_DnaA PF00308.13 gi|389846932|ref|YP_006349171.1| - 4.9e-06 26.3 1.8 6.3e-06 25.9 0.0 2.0 3 0 0 3 3 3 1 Bacterial dnaA protein AAA_15 PF13175.1 gi|389846932|ref|YP_006349171.1| - 0.00069 18.7 0.0 0.7 8.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|389846932|ref|YP_006349171.1| - 0.0035 16.5 0.0 0.064 12.4 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|389846932|ref|YP_006349171.1| - 0.0038 17.5 0.0 0.021 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|389846932|ref|YP_006349171.1| - 0.0046 16.2 0.0 4 6.6 0.0 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|389846932|ref|YP_006349171.1| - 0.047 13.3 0.0 0.15 11.7 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|389846932|ref|YP_006349171.1| - 0.063 13.0 0.5 2.7 7.7 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain AAA_14 PF13173.1 gi|389846932|ref|YP_006349171.1| - 0.072 12.9 0.0 1.2 9.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|389846932|ref|YP_006349171.1| - 0.1 11.9 0.1 0.36 10.1 0.0 1.9 3 0 0 3 3 3 0 Thymidylate kinase AAA_22 PF13401.1 gi|389846932|ref|YP_006349171.1| - 0.11 12.6 0.3 2.4 8.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|389846932|ref|YP_006349171.1| - 0.14 11.5 0.3 2 7.7 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein Bmp PF02608.9 gi|389846933|ref|YP_006349172.1| - 1.4e-65 221.0 2.0 1.7e-65 220.7 1.4 1.1 1 0 0 1 1 1 1 Basic membrane protein Biopterin_H PF00351.16 gi|389846933|ref|YP_006349172.1| - 0.04 12.6 0.0 0.061 12.0 0.0 1.2 1 0 0 1 1 1 0 Biopterin-dependent aromatic amino acid hydroxylase TAT_signal PF10518.4 gi|389846933|ref|YP_006349172.1| - 2.4 8.4 6.1 0.34 11.0 0.4 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PGM_PMM_I PF02878.11 gi|389846934|ref|YP_006349173.1| - 1e-35 122.1 0.0 4.1e-35 120.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|389846934|ref|YP_006349173.1| - 1.4e-21 76.7 0.3 3.3e-21 75.5 0.1 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|389846934|ref|YP_006349173.1| - 3.2e-11 43.0 0.1 1e-10 41.4 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|389846934|ref|YP_006349173.1| - 0.0016 18.4 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.13 gi|662859449|ref|YP_006349174.2| - 1.9e-27 95.2 0.0 2e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase HTH_20 PF12840.2 gi|389846938|ref|YP_006349177.1| - 9.1e-05 22.1 0.2 0.00021 21.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|389846938|ref|YP_006349177.1| - 0.00037 20.1 0.2 0.00098 18.8 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|389846938|ref|YP_006349177.1| - 0.00088 19.5 0.0 0.0019 18.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389846938|ref|YP_006349177.1| - 0.0025 17.4 0.2 0.0078 15.8 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|389846938|ref|YP_006349177.1| - 0.0043 16.6 0.2 0.012 15.1 0.2 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|389846938|ref|YP_006349177.1| - 0.0046 16.5 0.9 0.0067 16.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|389846938|ref|YP_006349177.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|389846938|ref|YP_006349177.1| - 0.015 15.0 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|389846938|ref|YP_006349177.1| - 0.018 14.4 0.0 0.037 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|389846938|ref|YP_006349177.1| - 0.061 13.4 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_34 PF13601.1 gi|389846938|ref|YP_006349177.1| - 0.11 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MaoC_dehydratas PF01575.14 gi|389846939|ref|YP_006349178.1| - 1.9e-06 27.2 0.0 8.6e-06 25.1 0.0 1.9 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389846939|ref|YP_006349178.1| - 2.5e-06 27.3 0.1 3.2e-05 23.7 0.1 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase DUF4366 PF14283.1 gi|389846940|ref|YP_006349179.1| - 0.023 14.1 2.7 0.054 12.9 1.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) DEAD PF00270.24 gi|389846940|ref|YP_006349179.1| - 0.12 11.8 0.2 0.76 9.2 0.1 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase ATP-synt_DE PF00401.15 gi|389846940|ref|YP_006349179.1| - 0.48 10.3 5.5 0.67 9.8 1.2 2.5 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Polyketide_cyc2 PF10604.4 gi|662859450|ref|YP_006349180.2| - 8.1e-11 42.2 4.8 1.1e-10 41.8 3.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|662859450|ref|YP_006349180.2| - 0.0039 17.1 0.4 0.0093 15.9 0.3 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport GHMP_kinases_N PF00288.21 gi|389846942|ref|YP_006349181.1| - 7.3e-07 29.1 3.7 4.4e-06 26.6 2.1 2.2 1 1 1 2 2 2 1 GHMP kinases N terminal domain DUF2026 PF09641.5 gi|389846942|ref|YP_006349181.1| - 0.022 14.1 0.2 0.038 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) TarH PF02203.10 gi|389846942|ref|YP_006349181.1| - 0.049 13.4 1.0 0.072 12.9 0.7 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue Pyr_redox PF00070.22 gi|389846943|ref|YP_006349182.1| - 7.1e-15 55.1 0.4 1.8e-10 41.0 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|389846943|ref|YP_006349182.1| - 1.1e-10 41.7 0.0 2.2e-10 40.7 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389846943|ref|YP_006349182.1| - 1.4e-07 30.7 2.0 0.058 12.2 0.0 3.7 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|389846943|ref|YP_006349182.1| - 3.2e-06 26.9 1.6 0.66 9.7 0.0 3.5 2 2 1 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|389846943|ref|YP_006349182.1| - 1.9e-05 24.8 1.0 0.056 13.5 0.1 3.4 1 1 3 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389846943|ref|YP_006349182.1| - 7.9e-05 22.6 0.1 0.23 11.5 0.0 3.5 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain DUF4147 PF13660.1 gi|389846943|ref|YP_006349182.1| - 0.0046 16.1 0.2 0.022 13.8 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) TrkA_N PF02254.13 gi|389846943|ref|YP_006349182.1| - 0.0073 16.3 0.4 1.7 8.6 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain Lycopene_cycl PF05834.7 gi|389846943|ref|YP_006349182.1| - 0.016 14.1 1.7 2.8 6.7 0.0 2.9 2 2 1 3 3 3 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|389846943|ref|YP_006349182.1| - 1.9 7.4 9.9 0.63 9.0 0.1 3.4 3 2 1 4 4 4 0 FAD binding domain CBM_6 PF03422.10 gi|389846944|ref|YP_006349183.1| - 0.0071 16.4 0.1 0.0071 16.4 0.1 2.9 2 1 1 3 3 3 1 Carbohydrate binding module (family 6) SNAP PF14938.1 gi|389846944|ref|YP_006349183.1| - 0.015 14.4 0.7 0.021 13.9 0.5 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP DUF4179 PF13786.1 gi|389846944|ref|YP_006349183.1| - 0.091 12.9 0.6 0.34 11.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Fmp27_WPPW PF10359.4 gi|389846944|ref|YP_006349183.1| - 6.7 5.0 6.4 0.21 9.9 0.3 1.4 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain MarR_2 PF12802.2 gi|389846945|ref|YP_006349184.1| - 3.7e-06 26.5 0.1 7.7e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389846945|ref|YP_006349184.1| - 2.8e-05 23.4 0.2 0.00013 21.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389846945|ref|YP_006349184.1| - 0.0002 20.9 0.0 0.00048 19.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389846945|ref|YP_006349184.1| - 0.00062 19.4 0.1 0.0012 18.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389846945|ref|YP_006349184.1| - 0.002 17.7 0.0 0.0053 16.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|389846945|ref|YP_006349184.1| - 0.0023 17.8 0.1 0.0053 16.6 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|389846945|ref|YP_006349184.1| - 0.0049 16.4 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Acyl-CoA_dh_1 PF00441.19 gi|389846946|ref|YP_006349185.1| - 1.5e-52 177.6 2.9 2.4e-52 177.0 2.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389846946|ref|YP_006349185.1| - 8.7e-36 122.9 0.6 1.4e-34 119.0 0.0 2.7 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|389846946|ref|YP_006349185.1| - 3.6e-25 88.7 6.4 7.4e-25 87.7 4.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389846946|ref|YP_006349185.1| - 2.8e-22 77.9 0.3 5.4e-22 77.0 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|389846946|ref|YP_006349185.1| - 0.0081 15.0 0.1 0.013 14.3 0.1 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB_N PF11794.3 gi|389846946|ref|YP_006349185.1| - 0.038 13.3 0.3 0.78 9.0 0.2 2.3 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.1 gi|389846947|ref|YP_006349186.1| - 4.4e-26 92.1 0.1 5.4e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389846947|ref|YP_006349186.1| - 1.5e-10 41.8 0.8 3.7e-09 37.3 0.5 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389846947|ref|YP_006349186.1| - 5.2e-08 32.4 0.1 1.8e-07 30.7 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|389846947|ref|YP_006349186.1| - 2e-06 28.1 0.0 2.5e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|389846947|ref|YP_006349186.1| - 0.003 17.4 0.0 0.44 10.4 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase MC1 PF05854.6 gi|389846948|ref|YP_006349187.1| - 7.1e-40 134.9 0.3 8e-40 134.7 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 NosD PF05048.8 gi|389846949|ref|YP_006349188.1| - 9.8e-26 90.3 56.3 3.5e-15 55.8 15.2 3.7 1 1 3 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|389846949|ref|YP_006349188.1| - 4.1e-21 75.3 70.0 6.6e-12 45.4 13.6 4.4 1 1 3 4 4 4 4 Right handed beta helix region DUF4399 PF14347.1 gi|389846950|ref|YP_006349189.1| - 1.2e-36 124.5 8.1 6.8e-23 80.5 0.9 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4399) RseC_MucC PF04246.7 gi|389846951|ref|YP_006349190.1| - 0.0079 15.7 0.6 0.0088 15.6 0.4 1.0 1 0 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC Mrr_N PF14338.1 gi|389846952|ref|YP_006349191.1| - 0.0001 22.2 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_45 PF14947.1 gi|389846952|ref|YP_006349191.1| - 0.025 14.4 0.0 0.033 14.0 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4095 PF13338.1 gi|389846952|ref|YP_006349191.1| - 0.067 13.3 0.1 0.08 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) DUF1247 PF06851.6 gi|662859451|ref|YP_006349192.2| - 0.11 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1247) DUF629 PF04780.7 gi|389846955|ref|YP_006349194.1| - 0.0037 15.8 0.4 0.0037 15.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) zf-RanBP PF00641.13 gi|389846955|ref|YP_006349194.1| - 0.0044 16.0 0.4 0.0069 15.4 0.3 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-C2H2_4 PF13894.1 gi|389846955|ref|YP_006349194.1| - 0.075 13.4 1.3 0.15 12.4 0.9 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger C1_1 PF00130.17 gi|389846955|ref|YP_006349194.1| - 0.086 12.5 0.2 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) UbiA PF01040.13 gi|389846956|ref|YP_006349195.1| - 2.4e-41 141.6 22.6 3e-41 141.3 15.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family KaiC PF06745.8 gi|389846957|ref|YP_006349196.1| - 2.1e-05 23.7 0.0 3.8e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|389846957|ref|YP_006349196.1| - 0.0027 17.2 0.0 0.0047 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) CoA_binding_2 PF13380.1 gi|389846958|ref|YP_006349197.1| - 4.6e-37 126.7 0.0 5.2e-37 126.5 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|389846958|ref|YP_006349197.1| - 1.1e-05 25.8 0.0 1.6e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|389846958|ref|YP_006349197.1| - 0.082 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA PALP PF00291.20 gi|389846959|ref|YP_006349198.1| - 1.5e-54 185.2 0.1 1.7e-54 185.1 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Cep57_CLD_2 PF14197.1 gi|389846960|ref|YP_006349199.1| - 8.5e-05 22.4 2.8 0.00019 21.2 2.0 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 DegS PF05384.6 gi|389846960|ref|YP_006349199.1| - 0.00062 19.0 2.3 0.00071 18.8 1.6 1.1 1 0 0 1 1 1 1 Sensor protein DegS Atg14 PF10186.4 gi|389846960|ref|YP_006349199.1| - 0.003 16.5 1.3 0.0035 16.3 0.9 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 GldM_N PF12081.3 gi|389846960|ref|YP_006349199.1| - 0.0032 17.0 0.4 0.0037 16.8 0.3 1.1 1 0 0 1 1 1 1 GldM N-terminal domain Med9 PF07544.8 gi|389846960|ref|YP_006349199.1| - 0.0046 16.6 3.1 0.0046 16.6 2.2 1.6 2 0 0 2 2 1 1 RNA polymerase II transcription mediator complex subunit 9 HR1 PF02185.11 gi|389846960|ref|YP_006349199.1| - 0.0056 16.4 0.9 0.0089 15.7 0.4 1.6 1 1 0 1 1 1 1 Hr1 repeat BLOC1_2 PF10046.4 gi|389846960|ref|YP_006349199.1| - 0.0065 16.5 1.2 0.0095 16.0 0.8 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF711 PF05167.7 gi|389846960|ref|YP_006349199.1| - 0.0093 14.7 2.0 0.011 14.4 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) CENP-F_leu_zip PF10473.4 gi|389846960|ref|YP_006349199.1| - 0.011 15.5 2.4 0.014 15.2 1.7 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Ham1p_like PF01725.11 gi|389846960|ref|YP_006349199.1| - 0.011 15.0 2.2 0.014 14.7 1.5 1.1 1 0 0 1 1 1 0 Ham1 family Snapin_Pallidin PF14712.1 gi|389846960|ref|YP_006349199.1| - 0.012 15.8 0.5 0.022 15.0 0.3 1.4 1 0 0 1 1 1 0 Snapin/Pallidin DUF972 PF06156.8 gi|389846960|ref|YP_006349199.1| - 0.014 15.7 0.8 0.016 15.5 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Flu_NS2 PF00601.14 gi|389846960|ref|YP_006349199.1| - 0.015 15.5 0.2 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) TBPIP PF07106.8 gi|389846960|ref|YP_006349199.1| - 0.018 14.5 0.9 0.022 14.2 0.6 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) LOH1CR12 PF10158.4 gi|389846960|ref|YP_006349199.1| - 0.024 14.4 0.4 0.036 13.8 0.2 1.3 1 1 0 1 1 1 0 Tumour suppressor protein Spc7 PF08317.6 gi|389846960|ref|YP_006349199.1| - 0.027 13.1 2.8 0.032 12.8 2.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein GP41 PF00517.12 gi|389846960|ref|YP_006349199.1| - 0.036 13.6 0.4 0.05 13.1 0.3 1.2 1 0 0 1 1 1 0 Retroviral envelope protein DASH_Spc34 PF08657.5 gi|389846960|ref|YP_006349199.1| - 0.037 13.6 3.5 0.042 13.5 2.4 1.1 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF2802 PF10975.3 gi|389846960|ref|YP_006349199.1| - 0.037 13.7 6.1 0.035 13.8 2.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) COG2 PF06148.6 gi|389846960|ref|YP_006349199.1| - 0.046 13.5 1.5 0.054 13.3 1.0 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.7 gi|389846960|ref|YP_006349199.1| - 0.047 13.4 2.6 0.051 13.3 1.4 1.4 1 1 0 1 1 1 0 Laminin Domain II DUF3826 PF12875.2 gi|389846960|ref|YP_006349199.1| - 0.052 13.2 2.0 0.066 12.8 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) IncA PF04156.9 gi|389846960|ref|YP_006349199.1| - 0.058 12.9 2.1 0.067 12.7 1.4 1.2 1 0 0 1 1 1 0 IncA protein DUF3373 PF11853.3 gi|389846960|ref|YP_006349199.1| - 0.064 11.7 1.1 0.082 11.4 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) CK2S PF15011.1 gi|389846960|ref|YP_006349199.1| - 0.065 13.0 2.5 0.089 12.5 1.7 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate TPR_MLP1_2 PF07926.7 gi|389846960|ref|YP_006349199.1| - 0.065 12.9 6.0 0.091 12.5 3.9 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3072 PF11272.3 gi|389846960|ref|YP_006349199.1| - 0.07 12.7 0.9 0.2 11.3 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3072) Rop-like PF05082.8 gi|389846960|ref|YP_006349199.1| - 0.087 12.3 0.7 0.37 10.2 0.1 2.0 1 1 1 2 2 2 0 Rop-like RmuC PF02646.11 gi|389846960|ref|YP_006349199.1| - 0.087 11.6 1.9 0.1 11.3 1.3 1.1 1 0 0 1 1 1 0 RmuC family Ax_dynein_light PF10211.4 gi|389846960|ref|YP_006349199.1| - 0.089 12.6 5.0 0.11 12.3 3.5 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain AATF-Che1 PF13339.1 gi|389846960|ref|YP_006349199.1| - 0.1 12.7 2.4 0.13 12.4 1.7 1.3 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Reo_sigmaC PF04582.7 gi|389846960|ref|YP_006349199.1| - 0.1 11.7 0.4 0.1 11.7 0.3 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein GOLGA2L5 PF15070.1 gi|389846960|ref|YP_006349199.1| - 0.12 10.8 7.2 0.15 10.5 5.0 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 APG6 PF04111.7 gi|389846960|ref|YP_006349199.1| - 0.14 11.1 3.7 0.15 11.0 2.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 eIF3_N PF09440.5 gi|389846960|ref|YP_006349199.1| - 0.18 11.9 2.0 0.22 11.6 1.4 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain Spc24 PF08286.6 gi|389846960|ref|YP_006349199.1| - 0.2 11.3 5.5 0.28 10.8 3.8 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 RHH_4 PF13467.1 gi|389846960|ref|YP_006349199.1| - 0.2 11.5 0.9 0.85 9.5 0.2 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix domain TMF_DNA_bd PF12329.3 gi|389846960|ref|YP_006349199.1| - 0.2 11.4 6.0 0.62 9.9 4.2 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Mnd1 PF03962.10 gi|389846960|ref|YP_006349199.1| - 0.27 10.8 5.1 0.31 10.6 3.5 1.1 1 0 0 1 1 1 0 Mnd1 family FbpA PF05833.6 gi|389846960|ref|YP_006349199.1| - 0.29 9.6 5.0 0.33 9.4 3.5 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) PhoU PF01895.14 gi|389846960|ref|YP_006349199.1| - 0.4 11.1 6.3 0.31 11.5 3.5 1.5 1 1 0 1 1 1 0 PhoU domain MIF4G_like_2 PF09090.6 gi|389846960|ref|YP_006349199.1| - 0.41 9.8 3.8 0.48 9.6 2.6 1.1 1 0 0 1 1 1 0 MIF4G like FlxA PF14282.1 gi|389846960|ref|YP_006349199.1| - 0.44 10.5 5.3 0.67 9.9 3.7 1.4 1 0 0 1 1 1 0 FlxA-like protein DivIC PF04977.10 gi|389846960|ref|YP_006349199.1| - 0.48 9.9 5.2 0.84 9.1 3.6 1.6 1 1 0 1 1 1 0 Septum formation initiator ERM PF00769.14 gi|389846960|ref|YP_006349199.1| - 0.51 9.8 10.3 0.59 9.6 7.1 1.0 1 0 0 1 1 1 0 Ezrin/radixin/moesin family FlaC_arch PF05377.6 gi|389846960|ref|YP_006349199.1| - 0.99 9.3 4.6 7.9 6.4 3.2 2.0 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DivIVA PF05103.8 gi|389846960|ref|YP_006349199.1| - 4.6 7.3 9.9 9 6.3 6.8 1.5 1 1 0 1 1 1 0 DivIVA protein ABC2_membrane_3 PF12698.2 gi|389846961|ref|YP_006349200.1| - 5.8e-17 61.7 0.0 8e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389846961|ref|YP_006349200.1| - 2.3e-11 43.0 0.0 3.6e-11 42.4 0.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389846962|ref|YP_006349201.1| - 0.00084 18.4 19.6 0.00084 18.4 13.6 2.1 3 0 0 3 3 3 1 ABC-2 family transporter protein Amastin PF07344.6 gi|389846962|ref|YP_006349201.1| - 5.3 6.6 10.7 0.46 10.1 0.3 2.5 2 0 0 2 2 2 0 Amastin surface glycoprotein ABC_tran PF00005.22 gi|389846963|ref|YP_006349202.1| - 7.1e-28 97.6 0.0 1.2e-27 96.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389846963|ref|YP_006349202.1| - 2.8e-14 53.7 0.0 2.2e-11 44.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|389846963|ref|YP_006349202.1| - 8e-05 23.0 0.0 0.00028 21.3 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|389846963|ref|YP_006349202.1| - 0.00029 21.2 0.1 0.00043 20.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|389846963|ref|YP_006349202.1| - 0.0051 16.4 0.1 0.023 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|389846963|ref|YP_006349202.1| - 0.0061 17.3 0.6 0.025 15.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|389846963|ref|YP_006349202.1| - 0.013 15.6 0.0 0.041 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|389846963|ref|YP_006349202.1| - 0.018 14.5 0.3 0.029 13.8 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|389846963|ref|YP_006349202.1| - 0.019 14.3 0.0 0.037 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|389846963|ref|YP_006349202.1| - 0.025 14.1 0.3 0.043 13.3 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|389846963|ref|YP_006349202.1| - 0.042 13.5 0.4 0.18 11.5 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|389846963|ref|YP_006349202.1| - 0.044 13.2 0.1 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|389846963|ref|YP_006349202.1| - 0.049 13.5 2.3 0.85 9.5 0.2 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|389846963|ref|YP_006349202.1| - 0.061 13.1 0.2 0.26 11.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|389846963|ref|YP_006349202.1| - 0.068 13.0 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain SMC_N PF02463.14 gi|389846963|ref|YP_006349202.1| - 0.19 10.9 0.3 2.2 7.4 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|389846963|ref|YP_006349202.1| - 0.32 10.5 1.2 1.7 8.2 0.3 2.1 2 0 0 2 2 2 0 AAA domain 3HCDH_N PF02737.13 gi|662859452|ref|YP_006349203.2| - 8.5e-64 214.5 0.5 1.1e-63 214.1 0.3 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|662859452|ref|YP_006349203.2| - 5.6e-33 113.2 0.3 8.5e-32 109.4 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|662859452|ref|YP_006349203.2| - 0.001 18.9 0.9 0.0016 18.2 0.6 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|662859452|ref|YP_006349203.2| - 0.0077 15.4 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|662859452|ref|YP_006349203.2| - 0.013 15.2 0.1 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|662859452|ref|YP_006349203.2| - 0.022 14.1 0.2 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|662859452|ref|YP_006349203.2| - 0.04 14.3 0.6 0.092 13.1 0.4 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|662859452|ref|YP_006349203.2| - 0.057 12.8 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAZAP2 PF11029.3 gi|662859452|ref|YP_006349203.2| - 0.067 13.6 0.1 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) HHH_5 PF14520.1 gi|389846965|ref|YP_006349204.1| - 6.7e-07 29.3 0.1 0.00015 21.8 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|389846965|ref|YP_006349204.1| - 6.2e-05 22.9 0.0 0.00014 21.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|389846965|ref|YP_006349204.1| - 0.072 13.0 0.0 0.89 9.5 0.0 2.2 2 0 0 2 2 2 0 Pathogenicity locus TfoX_C PF04994.8 gi|389846965|ref|YP_006349204.1| - 0.12 12.2 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 TfoX C-terminal domain DUF1455 PF07306.6 gi|389846966|ref|YP_006349205.1| - 0.45 10.5 9.1 1.4 8.9 6.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1455) FBPase PF00316.15 gi|389846967|ref|YP_006349206.1| - 1.7e-66 224.3 0.0 1.9e-66 224.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|389846967|ref|YP_006349206.1| - 0.00046 19.5 0.0 0.00096 18.5 0.0 1.5 1 0 0 1 1 1 1 Inositol monophosphatase family Carboxyl_trans PF01039.17 gi|662859453|ref|YP_006349207.2| - 2.9e-132 441.5 0.0 3.6e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain DUF63 PF01889.12 gi|662859454|ref|YP_006349208.2| - 0.032 14.3 0.4 0.035 14.1 0.3 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 MaoC_dehydratas PF01575.14 gi|389846970|ref|YP_006349209.1| - 9.7e-25 86.3 0.1 1.3e-24 85.9 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389846970|ref|YP_006349209.1| - 4.7e-06 26.4 0.2 3.1e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_3 PF13622.1 gi|389846970|ref|YP_006349209.1| - 0.014 15.1 0.0 0.016 14.9 0.0 1.0 1 0 0 1 1 1 0 Thioesterase-like superfamily ELFV_dehydrog PF00208.16 gi|389846971|ref|YP_006349210.1| - 9e-72 241.5 0.0 1.2e-71 241.2 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|389846971|ref|YP_006349210.1| - 1.7e-52 176.4 0.0 2.8e-52 175.7 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|389846971|ref|YP_006349210.1| - 0.0043 16.2 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|389846971|ref|YP_006349210.1| - 0.022 15.0 0.0 0.04 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|389846971|ref|YP_006349210.1| - 0.057 12.7 0.0 0.092 12.1 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain HpcH_HpaI PF03328.9 gi|662859455|ref|YP_006349211.2| - 6.4e-51 172.3 5.2 8e-51 172.0 3.6 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|662859455|ref|YP_006349211.2| - 2.1e-10 39.9 0.0 9.9e-06 24.5 0.0 2.2 2 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ELFV_dehydrog PF00208.16 gi|389846973|ref|YP_006349212.1| - 2.9e-75 252.9 0.3 4e-75 252.5 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|389846973|ref|YP_006349212.1| - 3.4e-51 172.2 0.0 5.7e-51 171.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|389846973|ref|YP_006349212.1| - 0.0016 17.6 0.0 0.003 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|389846973|ref|YP_006349212.1| - 0.0067 16.0 0.1 0.013 15.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HHH_8 PF14716.1 gi|389846973|ref|YP_006349212.1| - 0.11 12.6 0.1 0.41 10.8 0.1 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain OTCace_N PF02729.16 gi|389846974|ref|YP_006349213.1| - 2e-44 150.6 0.0 3.5e-44 149.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|389846974|ref|YP_006349213.1| - 5.7e-38 130.2 0.0 8.2e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|389846975|ref|YP_006349214.1| - 1.2e-36 124.5 0.7 1.6e-36 124.1 0.5 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|389846975|ref|YP_006349214.1| - 2.3e-18 65.3 0.8 3.8e-18 64.6 0.6 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HATPase_c PF02518.21 gi|389846976|ref|YP_006349215.1| - 4e-20 71.6 0.0 1.3e-18 66.7 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|389846976|ref|YP_006349215.1| - 4.2e-16 58.9 0.1 3e-15 56.2 0.0 2.3 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|389846976|ref|YP_006349215.1| - 2.2e-11 43.5 0.4 7.9e-11 41.7 0.3 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|389846976|ref|YP_006349215.1| - 2.7e-11 43.2 0.0 5.7e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|389846976|ref|YP_006349215.1| - 1.2e-10 41.6 0.0 5.2e-10 39.6 0.0 2.0 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.19 gi|389846976|ref|YP_006349215.1| - 1.5e-08 34.5 0.0 4.1e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|389846976|ref|YP_006349215.1| - 1.2e-05 25.3 0.0 6e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|389846976|ref|YP_006349215.1| - 0.00022 21.2 0.0 0.00046 20.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|389846976|ref|YP_006349215.1| - 0.00024 21.0 0.0 0.0012 18.8 0.0 2.3 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|389846976|ref|YP_006349215.1| - 0.0082 15.6 0.2 0.019 14.5 0.1 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|389846976|ref|YP_006349215.1| - 0.021 14.4 0.0 0.051 13.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|389846976|ref|YP_006349215.1| - 0.034 14.0 0.0 0.13 12.1 0.0 2.0 1 0 0 1 1 1 0 PAS domain DUF4015 PF13200.1 gi|389846977|ref|YP_006349216.1| - 0.00082 18.3 0.1 0.0014 17.6 0.0 1.4 1 1 0 1 1 1 1 Putative glycosyl hydrolase domain DUF187 PF02638.10 gi|389846977|ref|YP_006349216.1| - 0.045 12.6 0.0 0.059 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 adh_short PF00106.20 gi|389846978|ref|YP_006349217.1| - 2.2e-34 118.7 0.5 2.8e-34 118.4 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389846978|ref|YP_006349217.1| - 1.3e-31 110.2 0.0 1.5e-31 109.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389846978|ref|YP_006349217.1| - 2.4e-13 50.1 0.1 4.6e-13 49.2 0.1 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389846978|ref|YP_006349217.1| - 0.0064 15.9 0.1 0.013 14.9 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|389846978|ref|YP_006349217.1| - 0.02 14.6 0.3 0.039 13.7 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ThuA PF06283.6 gi|662859456|ref|YP_006349218.2| - 3.3e-49 167.5 0.0 3.7e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation ECH PF00378.15 gi|389846980|ref|YP_006349219.1| - 2e-48 164.6 0.1 2.4e-48 164.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family MR_MLE PF01188.16 gi|389846981|ref|YP_006349220.1| - 1.3e-18 67.3 1.5 4.9e-18 65.4 1.1 2.1 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|389846981|ref|YP_006349220.1| - 5.9e-17 61.6 0.4 2e-16 59.9 0.3 2.0 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|389846981|ref|YP_006349220.1| - 3.1e-06 27.1 1.8 5.2e-05 23.2 1.3 2.3 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|389846982|ref|YP_006349221.1| - 1.1e-41 142.8 21.1 1.3e-41 142.5 14.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DAO PF01266.19 gi|389846983|ref|YP_006349222.1| - 2.5e-10 39.8 4.2 2.8e-05 23.1 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389846983|ref|YP_006349222.1| - 3.2e-08 33.7 0.0 6.6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|389846983|ref|YP_006349222.1| - 4.4e-06 25.9 0.4 1.7e-05 24.1 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|389846983|ref|YP_006349222.1| - 7.3e-05 21.7 0.2 0.00017 20.5 0.0 1.6 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|389846983|ref|YP_006349222.1| - 0.00019 20.4 0.3 0.00084 18.2 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|389846983|ref|YP_006349222.1| - 0.00025 20.2 4.0 0.00073 18.7 0.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|389846983|ref|YP_006349222.1| - 0.00026 19.5 0.0 0.005 15.3 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|389846983|ref|YP_006349222.1| - 0.00033 19.8 0.0 0.0023 17.0 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|389846983|ref|YP_006349222.1| - 0.00045 19.2 0.0 0.27 10.1 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|389846983|ref|YP_006349222.1| - 0.0013 18.6 1.0 0.0029 17.5 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|389846983|ref|YP_006349222.1| - 0.0051 16.8 0.1 1.6 8.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389846983|ref|YP_006349222.1| - 0.063 13.6 0.2 0.28 11.6 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|389846983|ref|YP_006349222.1| - 1.2 8.9 7.0 0.46 10.2 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|389846983|ref|YP_006349222.1| - 1.6 7.2 4.5 5.9 5.3 0.1 2.1 1 1 1 2 2 2 0 Tryptophan halogenase Peripla_BP_2 PF01497.13 gi|389846984|ref|YP_006349223.1| - 2.3e-26 92.3 0.0 3.5e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389846984|ref|YP_006349223.1| - 0.096 12.7 0.3 0.096 12.7 0.2 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ECH PF00378.15 gi|389846985|ref|YP_006349224.1| - 9.2e-44 149.4 0.0 8.9e-43 146.1 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family TPP_enzyme_N PF02776.13 gi|389846987|ref|YP_006349226.1| - 6.5e-31 107.1 0.0 1.5e-30 105.9 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|389846987|ref|YP_006349226.1| - 3.8e-07 29.7 0.0 9.8e-07 28.4 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TrbC_Ftype PF09673.5 gi|389846987|ref|YP_006349226.1| - 0.006 16.1 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 2 Type-F conjugative transfer system pilin assembly protein Chorismate_bind PF00425.13 gi|662859457|ref|YP_006349227.2| - 2.2e-73 246.7 0.0 3.1e-73 246.2 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.14 gi|389846990|ref|YP_006349229.1| - 9.9e-44 148.7 0.0 1.2e-43 148.4 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TetR_N PF00440.18 gi|389846990|ref|YP_006349229.1| - 0.093 12.3 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family UPF0058 PF01893.11 gi|389846992|ref|YP_006349231.1| - 3.5e-33 113.5 0.3 3.9e-33 113.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Rhomboid PF01694.17 gi|389846993|ref|YP_006349232.1| - 4.7e-07 29.9 14.9 4.7e-07 29.9 10.3 3.2 2 1 0 2 2 2 1 Rhomboid family YqjK PF13997.1 gi|389846993|ref|YP_006349232.1| - 2.4 8.4 6.0 2.5 8.3 2.2 2.5 1 1 1 2 2 2 0 YqjK-like protein Methyltransf_26 PF13659.1 gi|389846994|ref|YP_006349233.1| - 8.5e-18 64.4 0.2 1.3e-17 63.9 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|389846994|ref|YP_006349233.1| - 4.8e-12 45.8 0.0 6e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|389846994|ref|YP_006349233.1| - 3.9e-11 43.5 0.1 1.1e-10 42.0 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|389846994|ref|YP_006349233.1| - 8.8e-11 41.4 0.0 1.4e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|389846994|ref|YP_006349233.1| - 4.6e-09 36.0 0.0 5.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|389846994|ref|YP_006349233.1| - 8.2e-09 34.9 0.0 1.1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|389846994|ref|YP_006349233.1| - 9.6e-09 34.8 0.0 9.6e-08 31.6 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|389846994|ref|YP_006349233.1| - 1.9e-07 31.3 0.0 1.3e-06 28.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389846994|ref|YP_006349233.1| - 4.2e-06 27.1 0.0 8.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389846994|ref|YP_006349233.1| - 5.5e-05 22.3 0.0 6.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|389846994|ref|YP_006349233.1| - 0.00025 20.6 0.0 0.00035 20.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|389846994|ref|YP_006349233.1| - 0.00072 19.1 0.0 0.00093 18.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_3 PF01596.12 gi|389846994|ref|YP_006349233.1| - 0.00098 18.2 0.1 0.0021 17.1 0.0 1.5 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_15 PF09445.5 gi|389846994|ref|YP_006349233.1| - 0.001 18.6 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|389846994|ref|YP_006349233.1| - 0.0014 18.3 0.0 0.0018 18.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|389846994|ref|YP_006349233.1| - 0.0016 17.5 0.0 0.0021 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|389846994|ref|YP_006349233.1| - 0.0033 17.1 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|389846994|ref|YP_006349233.1| - 0.013 14.6 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|389846994|ref|YP_006349233.1| - 0.014 14.4 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase MDMPI_N PF11716.3 gi|389846994|ref|YP_006349233.1| - 0.032 14.6 7.9 0.031 14.6 3.5 2.1 1 1 1 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain STAS_2 PF13466.1 gi|662859458|ref|YP_006349234.2| - 0.045 13.7 2.5 0.11 12.5 0.3 2.1 2 0 0 2 2 2 0 STAS domain LTD PF00932.14 gi|389846996|ref|YP_006349235.1| - 2.3e-22 79.2 8.0 5.1e-22 78.1 5.5 1.6 1 0 0 1 1 1 1 Lamin Tail Domain SNase PF00565.12 gi|389846996|ref|YP_006349235.1| - 1e-19 70.7 0.0 1.7e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue LPAM_1 PF08139.7 gi|389846996|ref|YP_006349235.1| - 0.13 12.4 0.3 0.24 11.7 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site TFIIB PF00382.14 gi|662859459|ref|YP_006349236.2| - 3.1e-46 155.0 2.2 5.6e-24 83.7 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|662859459|ref|YP_006349236.2| - 4.1e-19 67.6 1.3 6.7e-19 66.9 0.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|662859459|ref|YP_006349236.2| - 0.00019 20.7 1.8 0.00036 19.8 1.2 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain Ribosomal_S27e PF01667.12 gi|662859459|ref|YP_006349236.2| - 0.00057 19.3 0.3 0.0011 18.4 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|662859459|ref|YP_006349236.2| - 0.01 15.4 0.5 0.029 13.9 0.3 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|662859459|ref|YP_006349236.2| - 0.011 14.8 0.3 0.02 14.0 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_23 PF13384.1 gi|662859459|ref|YP_006349236.2| - 0.011 15.3 0.3 0.64 9.7 0.1 3.3 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|662859459|ref|YP_006349236.2| - 0.014 14.7 0.8 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 DZR PF12773.2 gi|662859459|ref|YP_006349236.2| - 0.017 14.8 0.9 0.039 13.7 0.6 1.6 1 0 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|662859459|ref|YP_006349236.2| - 0.019 14.4 0.6 0.037 13.5 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|662859459|ref|YP_006349236.2| - 0.034 14.4 0.4 0.084 13.1 0.3 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cyclin_N PF00134.18 gi|662859459|ref|YP_006349236.2| - 0.045 13.3 0.0 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain PhnA_Zn_Ribbon PF08274.7 gi|662859459|ref|YP_006349236.2| - 0.047 13.4 1.9 0.11 12.2 1.3 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.14 gi|662859459|ref|YP_006349236.2| - 0.074 12.9 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_3 PF01381.17 gi|662859459|ref|YP_006349236.2| - 0.11 12.4 0.1 6.1 6.7 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix Trm112p PF03966.11 gi|662859459|ref|YP_006349236.2| - 0.16 12.3 0.3 0.54 10.6 0.2 1.9 1 0 0 1 1 1 0 Trm112p-like protein zf-CHY PF05495.7 gi|662859459|ref|YP_006349236.2| - 0.18 11.9 0.5 0.43 10.7 0.4 1.6 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|662859459|ref|YP_006349236.2| - 0.24 11.3 4.1 0.8 9.7 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-trcl PF13451.1 gi|662859459|ref|YP_006349236.2| - 1.7 8.3 6.4 1 9.0 0.4 2.5 1 1 1 2 2 2 0 Probable zinc-binding domain PMT_2 PF13231.1 gi|662859460|ref|YP_006349237.2| - 4e-08 33.3 5.8 4e-08 33.3 4.0 3.2 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Usp PF00582.21 gi|389847000|ref|YP_006349239.1| - 5.1e-36 123.9 1.4 6.6e-36 123.5 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family NAD_binding_10 PF13460.1 gi|389847000|ref|YP_006349239.1| - 0.06 13.3 0.9 0.12 12.3 0.6 1.8 1 1 0 1 1 1 0 NADH(P)-binding Fer2 PF00111.22 gi|389847001|ref|YP_006349240.1| - 1.2e-11 44.2 2.6 1.5e-11 43.8 1.8 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|389847001|ref|YP_006349240.1| - 0.0052 16.5 0.2 0.0057 16.4 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|389847001|ref|YP_006349240.1| - 0.086 12.3 0.9 0.18 11.3 0.1 1.9 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Lactamase_B PF00753.22 gi|389847002|ref|YP_006349241.1| - 1.4e-18 67.2 3.8 2.1e-18 66.6 2.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|389847002|ref|YP_006349241.1| - 4.3e-10 39.9 0.0 2.5e-09 37.4 0.0 2.1 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|389847002|ref|YP_006349241.1| - 0.035 13.6 0.1 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain MCPsignal PF00015.16 gi|389847003|ref|YP_006349242.1| - 6.4e-46 156.5 50.8 6e-44 150.1 22.1 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|389847003|ref|YP_006349242.1| - 1.8e-28 99.1 3.4 1.9e-28 99.1 0.3 2.6 2 1 0 2 2 2 1 Protoglobin DUF948 PF06103.6 gi|389847003|ref|YP_006349242.1| - 0.0098 15.7 24.3 0.21 11.4 1.1 5.1 3 2 1 5 5 5 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|389847003|ref|YP_006349242.1| - 0.061 13.0 30.5 0.53 10.0 1.3 4.7 2 2 1 4 4 4 0 Laminin Domain II DASH_Duo1 PF08651.5 gi|389847003|ref|YP_006349242.1| - 0.14 11.7 3.8 0.14 11.7 0.1 2.9 3 0 0 3 3 3 0 DASH complex subunit Duo1 FH2 PF02181.18 gi|389847003|ref|YP_006349242.1| - 0.19 10.5 11.7 0.36 9.6 2.5 2.5 2 1 0 2 2 2 0 Formin Homology 2 Domain DUF1664 PF07889.7 gi|389847003|ref|YP_006349242.1| - 0.25 11.1 23.9 1.3 8.8 0.9 4.2 2 2 1 4 4 4 0 Protein of unknown function (DUF1664) DUF2408 PF10303.4 gi|389847003|ref|YP_006349242.1| - 0.62 10.1 6.8 1.1 9.4 1.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2408) DUF489 PF04356.7 gi|389847003|ref|YP_006349242.1| - 0.98 8.9 4.7 0.39 10.2 0.8 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF489) BLOC1_2 PF10046.4 gi|389847003|ref|YP_006349242.1| - 1 9.5 20.8 0.64 10.1 0.5 4.5 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.6 gi|389847003|ref|YP_006349242.1| - 1.6 8.5 19.6 11 5.8 2.7 4.6 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|389847003|ref|YP_006349242.1| - 2.1 6.1 14.9 4.6 4.9 9.8 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Muted PF14942.1 gi|389847003|ref|YP_006349242.1| - 2.4 8.0 17.2 1.5 8.6 4.0 3.4 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein DUF812 PF05667.6 gi|389847003|ref|YP_006349242.1| - 2.6 6.4 28.6 2.1 6.7 5.7 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Cauli_AT PF03233.8 gi|389847003|ref|YP_006349242.1| - 4 7.1 12.3 19 4.9 0.1 4.1 2 2 2 4 4 4 0 Aphid transmission protein DegS PF05384.6 gi|389847003|ref|YP_006349242.1| - 4.3 6.5 17.9 0.33 10.1 1.1 3.9 2 1 0 3 3 3 0 Sensor protein DegS LON PF02190.11 gi|389847003|ref|YP_006349242.1| - 4.4 6.9 7.6 6.3 6.4 4.0 2.1 1 1 0 1 1 1 0 ATP-dependent protease La (LON) domain Sec5 PF15469.1 gi|389847003|ref|YP_006349242.1| - 5.8 6.5 9.4 4.8 6.8 0.1 3.3 1 1 1 3 3 3 0 Exocyst complex component Sec5 DUF4200 PF13863.1 gi|389847003|ref|YP_006349242.1| - 6.2 6.7 15.4 0.055 13.4 2.7 3.1 3 1 1 4 4 3 0 Domain of unknown function (DUF4200) Reo_sigmaC PF04582.7 gi|389847003|ref|YP_006349242.1| - 6.4 5.8 25.1 2.5 7.2 5.5 2.4 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Rubrerythrin PF02915.12 gi|389847004|ref|YP_006349243.1| - 0.00052 20.3 0.3 0.0015 18.8 0.2 1.7 2 0 0 2 2 2 1 Rubrerythrin DUF1657 PF07870.6 gi|389847004|ref|YP_006349243.1| - 0.016 14.8 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) MOSC PF03473.12 gi|662859461|ref|YP_006349244.2| - 1e-12 47.6 0.0 1.4e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 MOSC domain DUF2688 PF10892.3 gi|662859461|ref|YP_006349244.2| - 0.049 13.3 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) GalKase_gal_bdg PF10509.4 gi|389847006|ref|YP_006349245.1| - 6.2e-17 60.6 0.1 1.2e-16 59.6 0.1 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|389847006|ref|YP_006349245.1| - 9.7e-14 51.3 0.4 2.3e-13 50.1 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|389847006|ref|YP_006349245.1| - 2.7e-11 43.3 1.7 2.7e-11 43.3 1.2 2.7 4 0 0 4 4 4 1 GHMP kinases N terminal domain FmdA_AmdA PF03069.10 gi|389847007|ref|YP_006349246.1| - 7.7e-67 225.5 0.1 1.1e-33 116.4 0.0 2.5 1 1 1 2 2 2 2 Acetamidase/Formamidase family DUF4287 PF14117.1 gi|389847007|ref|YP_006349246.1| - 0.039 13.6 0.1 0.074 12.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) MR_MLE_C PF13378.1 gi|389847008|ref|YP_006349247.1| - 8.7e-29 99.7 0.0 2.5e-28 98.2 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|389847008|ref|YP_006349247.1| - 5.3e-15 55.4 0.1 2.5e-14 53.2 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|389847008|ref|YP_006349247.1| - 3.7e-12 46.5 0.5 3.4e-10 40.2 0.0 3.6 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|389847008|ref|YP_006349247.1| - 0.002 17.8 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DNA_pol_viral_N PF00242.12 gi|389847009|ref|YP_006349248.1| - 6.9 5.5 8.3 7.7 5.4 5.7 1.1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain Hydrolase_3 PF08282.7 gi|389847010|ref|YP_006349249.1| - 9.3e-10 38.5 0.0 0.00054 19.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389847010|ref|YP_006349249.1| - 3.6e-05 24.0 0.2 0.00072 19.7 0.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|389847010|ref|YP_006349249.1| - 0.0014 17.9 0.2 0.067 12.4 0.0 2.5 3 0 0 3 3 3 2 Sucrose-6F-phosphate phosphohydrolase Innate_immun PF12782.2 gi|389847011|ref|YP_006349250.1| - 0.0011 18.2 0.6 0.0012 18.1 0.4 1.1 1 0 0 1 1 1 1 Invertebrate innate immunity transcript family Glypican PF01153.14 gi|389847011|ref|YP_006349250.1| - 0.16 10.5 0.8 0.19 10.2 0.5 1.0 1 0 0 1 1 1 0 Glypican PAS_4 PF08448.5 gi|389847012|ref|YP_006349251.1| - 7.9e-41 138.5 4.3 1e-15 57.6 0.1 4.5 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|389847012|ref|YP_006349251.1| - 3e-28 98.2 0.0 9e-11 42.0 0.0 4.0 4 0 0 4 4 3 3 PAS domain PAS PF00989.19 gi|389847012|ref|YP_006349251.1| - 2.2e-23 82.1 0.1 3.3e-09 36.5 0.0 4.1 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|389847012|ref|YP_006349251.1| - 2.6e-19 69.6 0.1 3.4e-08 33.6 0.0 3.2 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.21 gi|389847012|ref|YP_006349251.1| - 2.6e-19 68.9 0.2 8.7e-19 67.2 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|389847012|ref|YP_006349251.1| - 3.1e-18 66.6 0.6 2.6e-09 37.7 0.2 3.0 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.1 gi|389847012|ref|YP_006349251.1| - 4.4e-17 61.2 0.1 6.6e-06 25.7 0.0 4.0 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|389847012|ref|YP_006349251.1| - 3.4e-14 52.5 3.9 2.9e-13 49.5 0.1 4.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|389847012|ref|YP_006349251.1| - 1.3e-12 48.1 0.0 1.1e-05 25.6 0.0 2.6 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.19 gi|389847012|ref|YP_006349251.1| - 1.2e-08 34.9 1.7 1.8e-08 34.3 0.1 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_3 PF08447.6 gi|389847012|ref|YP_006349251.1| - 2.5e-06 27.4 0.0 2.3e-05 24.3 0.0 2.7 3 0 0 3 3 2 1 PAS fold HATPase_c_3 PF13589.1 gi|389847012|ref|YP_006349251.1| - 0.015 14.9 0.0 0.045 13.3 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|389847012|ref|YP_006349251.1| - 0.022 15.0 0.0 12 6.2 0.0 3.6 4 0 0 4 4 3 0 PAS domain DUF2930 PF11152.3 gi|389847012|ref|YP_006349251.1| - 0.03 13.4 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) PAS_7 PF12860.2 gi|389847012|ref|YP_006349251.1| - 0.099 12.6 7.5 1.4 8.9 0.0 4.8 5 3 1 6 6 6 0 PAS fold F_bP_aldolase PF01116.15 gi|389847013|ref|YP_006349252.1| - 2.7e-83 279.4 0.0 3.1e-83 279.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II TIM-br_sig_trns PF09370.5 gi|389847013|ref|YP_006349252.1| - 0.0006 18.9 0.2 0.014 14.5 0.0 2.3 2 1 0 2 2 2 1 TIM-barrel signal transduction protein PTS_IIB PF02302.12 gi|389847014|ref|YP_006349253.1| - 8.2e-17 61.4 1.0 1.4e-16 60.6 0.7 1.4 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.13 gi|389847015|ref|YP_006349254.1| - 5.3e-99 330.8 0.0 7.3e-99 330.3 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|389847015|ref|YP_006349254.1| - 3.6e-28 97.8 0.1 3.6e-28 97.8 0.1 2.4 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|389847015|ref|YP_006349254.1| - 6.2e-26 89.7 0.4 1.6e-25 88.4 0.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.14 gi|389847016|ref|YP_006349255.1| - 7.2e-24 83.5 0.1 7.9e-24 83.3 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.17 gi|389847017|ref|YP_006349256.1| - 5.5e-36 123.4 0.0 6.1e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Band_3_cyto PF07565.8 gi|389847017|ref|YP_006349256.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Band 3 cytoplasmic domain PTS_EIIC PF02378.13 gi|389847018|ref|YP_006349257.1| - 3e-21 75.5 39.0 3e-21 75.5 27.0 1.7 2 0 0 2 2 2 1 Phosphotransferase system, EIIC DUF4112 PF13430.1 gi|389847018|ref|YP_006349257.1| - 0.25 11.2 4.6 4.6 7.2 0.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4112) PfkB PF00294.19 gi|389847019|ref|YP_006349258.1| - 1.8e-47 161.9 3.6 2.3e-47 161.5 2.5 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|389847019|ref|YP_006349258.1| - 2.9e-05 23.3 0.0 4.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoRC PF00455.17 gi|389847020|ref|YP_006349259.1| - 1e-51 174.8 0.0 1.4e-51 174.3 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|389847020|ref|YP_006349259.1| - 4.5e-17 61.3 0.2 7.9e-17 60.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|389847020|ref|YP_006349259.1| - 1.2e-06 28.0 0.1 2.6e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|389847020|ref|YP_006349259.1| - 9.7e-06 25.1 0.4 2.8e-05 23.7 0.2 1.7 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|389847020|ref|YP_006349259.1| - 1.4e-05 24.3 0.2 4.4e-05 22.8 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|389847020|ref|YP_006349259.1| - 1.6e-05 24.4 0.1 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389847020|ref|YP_006349259.1| - 1.6e-05 24.5 0.2 3.9e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389847020|ref|YP_006349259.1| - 4.1e-05 23.2 0.1 9.4e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389847020|ref|YP_006349259.1| - 6.1e-05 22.3 2.7 0.00096 18.4 0.3 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389847020|ref|YP_006349259.1| - 0.00011 21.6 0.1 0.00023 20.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389847020|ref|YP_006349259.1| - 0.00016 21.2 0.1 0.00034 20.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|389847020|ref|YP_006349259.1| - 0.00039 19.9 0.1 0.00094 18.7 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|389847020|ref|YP_006349259.1| - 0.00064 19.9 0.1 0.0016 18.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|389847020|ref|YP_006349259.1| - 0.0016 18.4 0.2 0.0034 17.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|389847020|ref|YP_006349259.1| - 0.0027 17.4 0.0 0.044 13.5 0.0 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_36 PF13730.1 gi|389847020|ref|YP_006349259.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|389847020|ref|YP_006349259.1| - 0.013 15.2 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|389847020|ref|YP_006349259.1| - 0.028 14.3 0.1 0.077 12.9 0.1 1.8 1 0 0 1 1 1 0 Transposase DUF2250 PF10007.4 gi|389847020|ref|YP_006349259.1| - 0.03 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|389847020|ref|YP_006349259.1| - 0.042 13.8 0.2 0.095 12.6 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.8 gi|389847020|ref|YP_006349259.1| - 0.068 12.6 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF977 PF06163.6 gi|389847020|ref|YP_006349259.1| - 0.076 12.7 0.1 0.19 11.4 0.1 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Rrf2 PF02082.15 gi|389847020|ref|YP_006349259.1| - 0.086 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HxlR PF01638.12 gi|389847020|ref|YP_006349259.1| - 0.098 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_AsnC-type PF13404.1 gi|389847020|ref|YP_006349259.1| - 0.55 9.8 2.6 5.5 6.6 0.2 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Iso_dh PF00180.15 gi|389847021|ref|YP_006349260.1| - 3.8e-89 299.0 0.0 4.3e-89 298.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|389847022|ref|YP_006349261.1| - 7.7e-21 74.5 0.0 1.2e-20 73.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|389847023|ref|YP_006349262.1| - 8.2e-148 492.7 0.0 9.3e-148 492.5 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) IlvN PF07991.7 gi|389847025|ref|YP_006349264.1| - 6e-69 230.6 0.1 8e-69 230.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|389847025|ref|YP_006349264.1| - 1.7e-53 180.4 0.0 2.3e-53 179.9 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|389847025|ref|YP_006349264.1| - 7.1e-10 39.1 0.1 1.7e-09 37.9 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|389847025|ref|YP_006349264.1| - 1.3e-08 34.1 0.0 2.4e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|389847025|ref|YP_006349264.1| - 8.5e-07 28.9 0.0 1.6e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|389847025|ref|YP_006349264.1| - 0.00058 19.3 0.1 0.0012 18.3 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.20 gi|389847025|ref|YP_006349264.1| - 0.0022 17.9 0.5 0.005 16.8 0.3 1.5 1 0 0 1 1 1 1 Mur ligase family, catalytic domain AdoHcyase_NAD PF00670.16 gi|389847025|ref|YP_006349264.1| - 0.0033 17.2 0.1 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|389847025|ref|YP_006349264.1| - 0.013 15.2 0.4 0.29 10.8 0.3 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|389847025|ref|YP_006349264.1| - 0.016 15.7 0.7 0.032 14.7 0.1 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|389847025|ref|YP_006349264.1| - 0.024 14.3 0.1 0.044 13.5 0.1 1.4 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|389847025|ref|YP_006349264.1| - 0.035 13.7 0.5 0.097 12.3 0.3 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|389847025|ref|YP_006349264.1| - 0.043 13.9 2.6 0.45 10.7 0.2 2.7 2 1 1 3 3 3 0 CoA binding domain NAD_binding_7 PF13241.1 gi|389847025|ref|YP_006349264.1| - 0.055 13.7 0.1 0.38 11.0 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding ALS_ss_C PF10369.4 gi|389847026|ref|YP_006349265.1| - 9.6e-20 70.1 0.0 1.5e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|389847026|ref|YP_006349265.1| - 3.1e-17 62.1 0.0 7.1e-16 57.7 0.0 2.3 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|389847026|ref|YP_006349265.1| - 3.8e-10 39.0 0.2 1.5e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|389847026|ref|YP_006349265.1| - 0.022 15.1 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 ACT domain ACT_6 PF13740.1 gi|389847026|ref|YP_006349265.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 ACT domain TPP_enzyme_N PF02776.13 gi|389847027|ref|YP_006349266.1| - 2.7e-52 176.7 0.9 2.1e-51 173.8 0.5 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|389847027|ref|YP_006349266.1| - 1.1e-50 171.1 0.0 2.5e-50 170.0 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|389847027|ref|YP_006349266.1| - 1.5e-40 138.1 0.3 5.5e-40 136.2 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF953 PF06110.6 gi|389847027|ref|YP_006349266.1| - 0.007 15.7 0.0 0.54 9.7 0.0 2.4 2 0 0 2 2 2 1 Eukaryotic protein of unknown function (DUF953) CO_dh PF02552.11 gi|389847027|ref|YP_006349266.1| - 0.053 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.14 gi|662859462|ref|YP_006349267.2| - 3.4e-69 233.1 5.9 5.6e-69 232.4 4.1 1.4 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|662859462|ref|YP_006349267.2| - 0.00018 21.6 0.8 0.026 14.6 0.0 2.9 2 1 1 3 3 3 1 Radical SAM superfamily AP_endonuc_2 PF01261.19 gi|662859462|ref|YP_006349267.2| - 0.023 13.9 0.6 0.058 12.6 0.1 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Lipase_GDSL_2 PF13472.1 gi|662859462|ref|YP_006349267.2| - 0.032 14.3 0.3 0.06 13.4 0.2 1.5 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family OCC1 PF15506.1 gi|389847031|ref|YP_006349270.1| - 0.11 12.4 0.2 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 OCC1 family RHH_1 PF01402.16 gi|389847032|ref|YP_006349271.1| - 0.00079 19.2 0.2 0.0029 17.4 0.0 1.9 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF320 PF03777.8 gi|662859464|ref|YP_006349272.2| - 0.0058 16.3 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 Small secreted domain (DUF320) Glycos_transf_2 PF00535.21 gi|389847034|ref|YP_006349273.1| - 2.2e-19 69.7 0.0 4.3e-19 68.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389847034|ref|YP_006349273.1| - 1.3e-10 41.4 0.0 2.1e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|389847034|ref|YP_006349273.1| - 3.7e-07 30.3 0.0 6.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|389847034|ref|YP_006349273.1| - 0.006 16.6 0.0 0.0097 15.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2910 PF11139.3 gi|389847034|ref|YP_006349273.1| - 0.02 14.0 0.3 0.029 13.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Glyco_tranf_2_3 PF13641.1 gi|389847035|ref|YP_006349274.1| - 5.2e-23 82.0 0.1 8.6e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|389847035|ref|YP_006349274.1| - 2e-18 66.6 0.6 4.5e-18 65.5 0.2 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|389847035|ref|YP_006349274.1| - 3.2e-17 62.8 0.0 5.8e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|389847035|ref|YP_006349274.1| - 2.8e-10 39.7 0.4 7.3e-10 38.4 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_4_4 PF13579.1 gi|389847036|ref|YP_006349275.1| - 5.9e-29 101.2 12.3 5.9e-29 101.2 8.5 2.4 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|389847036|ref|YP_006349275.1| - 1.3e-25 89.7 0.0 1.9e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|389847036|ref|YP_006349275.1| - 1e-24 87.2 0.6 2.5e-24 85.9 0.4 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|389847036|ref|YP_006349275.1| - 1.6e-18 67.1 0.3 8.3e-17 61.6 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|389847036|ref|YP_006349275.1| - 3.3e-07 30.2 0.0 4.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|389847036|ref|YP_006349275.1| - 0.00011 21.7 0.4 0.01 15.3 0.0 2.6 1 1 1 2 2 2 1 Starch synthase catalytic domain DAGK_cat PF00781.19 gi|389847036|ref|YP_006349275.1| - 0.12 11.8 0.0 19 4.7 0.0 2.3 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Methyltransf_11 PF08241.7 gi|389847037|ref|YP_006349276.1| - 8e-09 35.8 0.5 1.6e-08 34.8 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389847037|ref|YP_006349276.1| - 8.9e-07 28.7 0.0 1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847037|ref|YP_006349276.1| - 0.0031 17.0 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389847037|ref|YP_006349276.1| - 0.0082 16.5 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389847037|ref|YP_006349276.1| - 0.01 14.9 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Sulfatase PF00884.18 gi|389847038|ref|YP_006349277.1| - 2.1e-35 122.4 0.1 2.6e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|389847038|ref|YP_006349277.1| - 0.00042 19.7 0.0 0.027 13.8 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|389847038|ref|YP_006349277.1| - 0.0045 15.8 0.1 0.0072 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|389847038|ref|YP_006349277.1| - 0.0046 15.4 0.0 0.0082 14.6 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Sulfatase PF00884.18 gi|389847039|ref|YP_006349278.1| - 7.3e-34 117.3 0.1 5.8e-32 111.0 0.0 2.1 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|389847039|ref|YP_006349278.1| - 1.1e-09 38.1 1.9 0.0002 20.8 0.1 2.2 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|389847039|ref|YP_006349278.1| - 0.00016 21.1 0.0 0.00026 20.4 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|389847040|ref|YP_006349279.1| - 9.3e-41 140.3 0.0 1.6e-40 139.5 0.0 1.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|389847040|ref|YP_006349279.1| - 0.0018 17.6 0.0 0.067 12.5 0.1 2.1 2 0 0 2 2 2 2 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|389847041|ref|YP_006349280.1| - 7.3e-23 80.8 0.0 1.3e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|389847041|ref|YP_006349280.1| - 5.5e-21 75.1 0.0 9.9e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|389847041|ref|YP_006349280.1| - 0.0057 16.8 1.2 0.039 14.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|389847041|ref|YP_006349280.1| - 0.067 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|389847042|ref|YP_006349281.1| - 2.2e-47 161.7 0.0 2.9e-47 161.3 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|389847042|ref|YP_006349281.1| - 4.8e-14 52.4 0.2 1.5e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|389847042|ref|YP_006349281.1| - 0.00044 18.7 0.1 0.00065 18.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|389847042|ref|YP_006349281.1| - 0.033 13.5 0.0 0.086 12.2 0.0 1.6 2 0 0 2 2 2 0 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|389847043|ref|YP_006349282.1| - 2.7e-41 142.1 0.0 1.6e-38 132.9 0.0 2.0 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|389847043|ref|YP_006349282.1| - 3.8e-07 29.7 0.0 7.2e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|389847044|ref|YP_006349283.1| - 9.8e-42 143.5 0.1 1.1e-41 143.3 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|389847044|ref|YP_006349283.1| - 0.0016 17.9 0.3 0.3 10.4 0.1 2.2 2 0 0 2 2 2 2 Metalloenzyme superfamily DUF229 PF02995.12 gi|389847044|ref|YP_006349283.1| - 0.23 9.8 0.1 0.31 9.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Polysacc_synt PF01943.12 gi|389847045|ref|YP_006349284.1| - 4.6e-21 75.3 18.0 4.6e-21 75.3 12.5 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|389847045|ref|YP_006349284.1| - 4.8e-16 58.9 26.6 4.8e-16 58.9 18.5 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|389847045|ref|YP_006349284.1| - 3e-10 40.0 43.0 5.4e-10 39.2 11.4 3.3 3 0 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|389847045|ref|YP_006349284.1| - 2.6e-06 26.1 19.8 2.6e-06 26.1 13.7 2.1 1 1 1 2 2 2 1 MviN-like protein NKAIN PF05640.9 gi|389847045|ref|YP_006349284.1| - 0.066 12.1 2.4 0.17 10.7 1.6 1.7 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein MNHE PF01899.11 gi|389847045|ref|YP_006349284.1| - 0.42 10.2 0.0 0.42 10.2 0.0 4.1 3 2 1 4 4 4 0 Na+/H+ ion antiporter subunit TcdA_TcdB_pore PF12920.2 gi|389847045|ref|YP_006349284.1| - 3.3 5.5 4.3 5.6 4.7 3.0 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain STT3 PF02516.9 gi|389847046|ref|YP_006349285.1| - 4.7e-20 72.0 26.7 6.2e-18 65.0 18.5 2.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF368 PF04018.8 gi|389847047|ref|YP_006349286.1| - 3.5e-70 236.1 15.4 3.5e-70 236.1 10.7 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) DRTGG PF07085.7 gi|389847047|ref|YP_006349286.1| - 0.073 12.6 0.7 0.21 11.1 0.1 2.0 2 0 0 2 2 2 0 DRTGG domain Methyltransf_11 PF08241.7 gi|389847048|ref|YP_006349287.1| - 1.2e-18 67.3 0.0 1.9e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389847048|ref|YP_006349287.1| - 3.6e-12 46.5 0.0 5.2e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847048|ref|YP_006349287.1| - 9.7e-11 41.4 0.0 1.2e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389847048|ref|YP_006349287.1| - 3.7e-09 37.1 0.0 5.7e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389847048|ref|YP_006349287.1| - 7.6e-09 35.0 0.0 1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|389847048|ref|YP_006349287.1| - 1.3e-07 31.6 0.1 1.9e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389847048|ref|YP_006349287.1| - 4.5e-07 29.7 0.0 6.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|389847048|ref|YP_006349287.1| - 1.5e-05 24.1 0.0 1.9e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|389847048|ref|YP_006349287.1| - 2.6e-05 24.6 0.0 4.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|389847048|ref|YP_006349287.1| - 0.00092 18.9 0.0 0.0021 17.7 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.14 gi|389847048|ref|YP_006349287.1| - 0.0035 17.3 0.0 0.0074 16.2 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase HCV_NS4a PF01006.15 gi|389847048|ref|YP_006349287.1| - 0.013 15.0 0.1 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a MTS PF05175.9 gi|389847048|ref|YP_006349287.1| - 0.017 14.5 0.0 0.029 13.7 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|389847048|ref|YP_006349287.1| - 0.021 15.6 0.1 0.033 15.0 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.7 gi|389847048|ref|YP_006349287.1| - 0.04 12.7 0.0 0.045 12.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF4350 PF14258.1 gi|389847048|ref|YP_006349287.1| - 0.04 14.1 0.1 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) CutA1 PF03091.10 gi|389847050|ref|YP_006349289.1| - 2.4e-14 52.8 0.0 2.5e-14 52.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Hydrolase_3 PF08282.7 gi|389847051|ref|YP_006349290.1| - 4.3e-26 92.0 0.0 4.9e-17 62.3 0.1 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|389847051|ref|YP_006349290.1| - 9.7e-06 25.0 0.0 0.00013 21.3 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|389847051|ref|YP_006349290.1| - 6.5e-05 23.4 0.2 0.0011 19.4 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|389847051|ref|YP_006349290.1| - 0.00017 20.5 0.3 0.0022 16.9 0.0 2.0 2 0 0 2 2 2 1 Trehalose-phosphatase HAD_2 PF13419.1 gi|389847051|ref|YP_006349290.1| - 0.00069 19.8 0.4 0.021 15.0 0.3 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389847051|ref|YP_006349290.1| - 0.0068 16.5 4.8 1.2 9.2 3.3 2.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF162 PF02589.10 gi|389847051|ref|YP_006349290.1| - 0.85 9.0 4.1 1.9 7.9 0.1 2.6 2 1 1 3 3 3 0 Uncharacterised ACR, YkgG family COG1556 AAA_16 PF13191.1 gi|662859465|ref|YP_006349291.2| - 1.5e-10 41.3 0.2 6.9e-10 39.2 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|662859465|ref|YP_006349291.2| - 0.00014 22.0 0.0 0.00026 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|662859465|ref|YP_006349291.2| - 0.0037 17.0 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 NTPase AAA_25 PF13481.1 gi|662859465|ref|YP_006349291.2| - 0.018 14.4 0.0 0.058 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|662859465|ref|YP_006349291.2| - 0.025 14.7 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase HTH_DeoR PF08220.7 gi|662859465|ref|YP_006349291.2| - 0.063 12.8 0.1 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain AAA_33 PF13671.1 gi|662859465|ref|YP_006349291.2| - 0.11 12.3 0.1 0.37 10.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF2459 PF09601.5 gi|662859465|ref|YP_006349291.2| - 0.12 12.0 0.1 0.3 10.7 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2459) AAA_14 PF13173.1 gi|662859465|ref|YP_006349291.2| - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|662859465|ref|YP_006349291.2| - 0.21 11.2 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DAO PF01266.19 gi|389847053|ref|YP_006349292.1| - 1.3e-62 211.7 0.8 1.8e-62 211.3 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389847053|ref|YP_006349292.1| - 8.8e-09 34.6 3.5 1.4e-07 30.7 2.4 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|389847053|ref|YP_006349292.1| - 9.3e-08 32.1 0.2 0.00041 20.3 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|389847053|ref|YP_006349292.1| - 1.7e-06 27.9 4.0 2.6e-06 27.3 1.9 2.1 2 0 0 2 2 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|389847053|ref|YP_006349292.1| - 1.6e-05 24.1 8.3 0.00028 20.0 5.7 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|389847053|ref|YP_006349292.1| - 7.4e-05 22.0 5.7 0.00022 20.4 3.9 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|389847053|ref|YP_006349292.1| - 0.0013 18.3 0.4 0.0029 17.3 0.3 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|389847053|ref|YP_006349292.1| - 0.0036 17.2 1.1 0.016 15.2 0.7 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|389847053|ref|YP_006349292.1| - 0.0083 16.2 0.2 1.2 9.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase YbjQ_1 PF01906.12 gi|389847053|ref|YP_006349292.1| - 0.024 15.0 0.0 0.058 13.8 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.12 gi|389847053|ref|YP_006349292.1| - 0.025 13.6 3.2 0.67 8.9 0.1 2.3 2 0 0 2 2 2 0 Thi4 family Pyr_redox PF00070.22 gi|389847053|ref|YP_006349292.1| - 0.033 14.6 0.5 0.033 14.6 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389847053|ref|YP_006349292.1| - 0.062 11.7 0.4 0.13 10.6 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|389847053|ref|YP_006349292.1| - 0.091 12.2 0.4 0.2 11.1 0.3 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|389847053|ref|YP_006349292.1| - 0.19 11.7 2.9 0.32 10.9 0.5 2.4 3 0 0 3 3 3 0 NADH(P)-binding GMC_oxred_N PF00732.14 gi|389847053|ref|YP_006349292.1| - 0.41 9.7 4.6 0.44 9.6 0.1 2.8 2 1 0 3 3 3 0 GMC oxidoreductase GIDA PF01134.17 gi|389847053|ref|YP_006349292.1| - 0.74 8.6 3.2 0.47 9.2 0.5 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|389847053|ref|YP_006349292.1| - 1.4 8.6 3.7 5.8 6.6 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|389847054|ref|YP_006349293.1| - 1.8e-28 99.5 1.5 2.5e-28 99.0 1.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|389847054|ref|YP_006349293.1| - 1.5e-12 47.1 1.1 5.8e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|389847054|ref|YP_006349293.1| - 5.8e-11 42.1 1.6 8e-06 25.1 1.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|389847054|ref|YP_006349293.1| - 3e-08 32.5 0.2 0.0021 16.5 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|389847054|ref|YP_006349293.1| - 5.9e-08 32.8 0.1 0.0022 17.8 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|389847054|ref|YP_006349293.1| - 5.9e-07 28.6 2.3 2.3e-06 26.7 0.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|389847054|ref|YP_006349293.1| - 0.0004 20.7 1.0 0.0036 17.6 0.2 2.8 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|389847054|ref|YP_006349293.1| - 0.015 15.5 0.5 0.03 14.5 0.0 1.7 2 0 0 2 2 1 0 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|389847054|ref|YP_006349293.1| - 0.047 13.7 0.8 0.14 12.1 0.5 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|389847054|ref|YP_006349293.1| - 0.074 11.9 0.2 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|389847054|ref|YP_006349293.1| - 0.077 12.5 0.2 0.19 11.2 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|389847054|ref|YP_006349293.1| - 0.1 11.6 0.3 0.85 8.6 0.3 2.0 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|389847054|ref|YP_006349293.1| - 0.11 12.5 0.0 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.11 gi|389847055|ref|YP_006349294.1| - 9.3e-24 83.2 0.6 2.2e-11 43.6 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|389847055|ref|YP_006349294.1| - 2.8e-08 33.6 7.0 2.8e-08 33.6 4.8 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|389847055|ref|YP_006349294.1| - 1.1e-05 25.6 14.8 1.2e-05 25.5 6.0 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389847055|ref|YP_006349294.1| - 5.4e-05 23.5 9.9 0.014 15.7 0.2 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|389847055|ref|YP_006349294.1| - 0.0001 22.4 15.4 0.013 15.7 9.2 3.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389847055|ref|YP_006349294.1| - 0.00026 20.7 16.6 0.00043 20.0 8.3 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389847055|ref|YP_006349294.1| - 0.0025 18.1 11.9 0.0025 18.1 8.3 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|389847055|ref|YP_006349294.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_21 PF14697.1 gi|389847055|ref|YP_006349294.1| - 0.045 13.6 10.6 0.17 11.7 0.6 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389847055|ref|YP_006349294.1| - 0.062 14.0 17.3 0.072 13.8 7.8 3.4 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain zf-CSL PF05207.8 gi|389847055|ref|YP_006349294.1| - 0.73 9.3 0.0 0.73 9.3 0.0 4.1 3 2 0 3 3 2 0 CSL zinc finger FGGY_N PF00370.16 gi|389847056|ref|YP_006349295.1| - 8.8e-78 260.9 0.0 1.2e-77 260.6 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|389847056|ref|YP_006349295.1| - 1.1e-61 207.9 0.6 1.6e-61 207.3 0.4 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|389847056|ref|YP_006349295.1| - 1.1e-05 24.9 0.1 0.0033 16.7 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family PTS-HPr PF00381.14 gi|389847058|ref|YP_006349297.1| - 3.9e-25 87.5 0.0 4.4e-25 87.3 0.0 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site EIIA-man PF03610.11 gi|389847059|ref|YP_006349298.1| - 2.1e-22 79.3 1.5 2.6e-22 79.0 1.1 1.1 1 0 0 1 1 1 1 PTS system fructose IIA component Dak2 PF02734.12 gi|389847060|ref|YP_006349299.1| - 7e-45 152.8 0.9 7e-45 152.8 0.7 1.5 2 0 0 2 2 2 1 DAK2 domain Dak1 PF02733.12 gi|389847061|ref|YP_006349300.1| - 5.1e-105 350.6 3.2 5.8e-105 350.4 2.2 1.0 1 0 0 1 1 1 1 Dak1 domain tRNA-synt_1 PF00133.17 gi|662859466|ref|YP_006349301.2| - 4.1e-184 612.9 0.5 5.1e-184 612.6 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|662859466|ref|YP_006349301.2| - 3.3e-30 105.0 0.2 6.7e-11 41.4 0.1 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|662859466|ref|YP_006349301.2| - 9.7e-27 93.5 0.1 2.2e-26 92.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|662859466|ref|YP_006349301.2| - 8.2e-06 25.2 0.0 2.2e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|662859466|ref|YP_006349301.2| - 0.0038 16.4 0.0 0.015 14.4 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.9 gi|662859466|ref|YP_006349301.2| - 0.0089 15.6 0.3 0.023 14.3 0.2 1.7 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS tRNA-synt_1f PF01921.13 gi|662859466|ref|YP_006349301.2| - 0.0089 14.7 0.0 0.037 12.6 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) UPF0175 PF03683.8 gi|389847064|ref|YP_006349303.1| - 2.3e-07 30.1 0.0 9.6e-07 28.1 0.0 1.9 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) DUF3818 PF12825.2 gi|389847064|ref|YP_006349303.1| - 0.1 11.2 0.0 6 5.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) 4HBT PF03061.17 gi|389847066|ref|YP_006349305.1| - 1.4e-16 60.4 0.3 1.9e-16 59.9 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DNase-RNase PF02577.9 gi|389847067|ref|YP_006349306.1| - 7.2e-38 128.8 0.0 8.8e-38 128.5 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HTH_20 PF12840.2 gi|389847068|ref|YP_006349307.1| - 6.7e-14 51.4 1.0 1.3e-13 50.4 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389847068|ref|YP_006349307.1| - 1.6e-07 30.6 0.0 2.5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|389847068|ref|YP_006349307.1| - 3.1e-06 26.7 0.1 6.3e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389847068|ref|YP_006349307.1| - 1.3e-05 24.8 0.1 2.9e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389847068|ref|YP_006349307.1| - 8.2e-05 22.1 0.0 0.00017 21.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|389847068|ref|YP_006349307.1| - 0.00079 19.4 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|389847068|ref|YP_006349307.1| - 0.0073 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|389847068|ref|YP_006349307.1| - 0.023 14.4 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.4 gi|389847068|ref|YP_006349307.1| - 0.03 14.3 0.1 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF742 PF05331.6 gi|389847068|ref|YP_006349307.1| - 0.032 13.8 0.3 0.064 12.8 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF742) Phage_rep_org_N PF09681.5 gi|389847068|ref|YP_006349307.1| - 0.033 13.7 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.1 gi|389847068|ref|YP_006349307.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|389847068|ref|YP_006349307.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.5 gi|389847068|ref|YP_006349307.1| - 0.12 12.0 0.0 0.25 11.1 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4147 PF13660.1 gi|389847069|ref|YP_006349308.1| - 3.3e-81 271.9 0.4 5.9e-81 271.0 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|389847069|ref|YP_006349308.1| - 7.6e-24 83.8 1.2 1.6e-23 82.8 0.8 1.6 1 0 0 1 1 1 1 MOFRL family TraB PF01963.12 gi|389847070|ref|YP_006349309.1| - 3e-39 135.0 0.1 7.3e-20 71.4 0.0 2.2 2 0 0 2 2 2 2 TraB family Hydrolase PF00702.21 gi|389847070|ref|YP_006349309.1| - 0.053 13.9 0.1 0.18 12.2 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Peptidase_M50 PF02163.17 gi|389847071|ref|YP_006349310.1| - 1.3e-05 24.2 19.4 5.7e-05 22.1 11.8 2.6 1 1 0 1 1 1 1 Peptidase family M50 TMEMspv1-c74-12 PF11044.3 gi|389847071|ref|YP_006349310.1| - 0.23 11.0 3.6 0.48 10.0 2.5 1.5 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Kinocilin PF15033.1 gi|389847071|ref|YP_006349310.1| - 6.2 6.3 7.9 2.9 7.4 0.9 2.7 2 1 0 2 2 2 0 Kinocilin protein Tail_P2_I PF09684.5 gi|662859467|ref|YP_006349311.2| - 0.091 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) AIRS_C PF02769.17 gi|389847073|ref|YP_006349312.1| - 7.2e-20 71.5 0.1 1.1e-19 70.8 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|389847073|ref|YP_006349312.1| - 1.5e-16 60.4 1.6 3e-16 59.4 1.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain p450 PF00067.17 gi|662859468|ref|YP_006349313.2| - 3.2e-76 256.7 0.0 3.8e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 CBS PF00571.23 gi|389847075|ref|YP_006349314.1| - 1.7e-20 72.5 3.1 2.5e-12 46.3 0.0 2.9 2 1 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|389847075|ref|YP_006349314.1| - 5.2e-11 42.5 1.1 9.3e-11 41.7 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|389847075|ref|YP_006349314.1| - 8.2e-11 41.5 0.1 1.4e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|389847075|ref|YP_006349314.1| - 1.7e-08 34.3 0.0 3.2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|389847075|ref|YP_006349314.1| - 0.00039 20.1 0.0 0.00068 19.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|389847075|ref|YP_006349314.1| - 0.0015 18.1 0.1 0.0029 17.1 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|389847075|ref|YP_006349314.1| - 0.025 14.7 0.0 0.049 13.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|389847075|ref|YP_006349314.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF555 PF04475.7 gi|389847076|ref|YP_006349315.1| - 1.9e-46 156.2 0.1 2.3e-46 155.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|389847076|ref|YP_006349315.1| - 0.02 14.3 0.2 0.032 13.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Proteasome PF00227.21 gi|389847077|ref|YP_006349316.1| - 2.4e-51 173.7 0.4 2.8e-51 173.5 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_ligase_A_M PF01068.16 gi|389847079|ref|YP_006349318.1| - 2e-45 154.6 0.0 2.8e-45 154.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|389847079|ref|YP_006349318.1| - 3e-39 134.6 0.0 1e-38 132.8 0.0 1.9 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|389847079|ref|YP_006349318.1| - 2.2e-16 60.0 0.0 6.8e-16 58.4 0.0 1.9 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B_3 PF13483.1 gi|389847080|ref|YP_006349319.1| - 1.7e-28 99.3 0.0 2.2e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain XdhC_C PF13478.1 gi|389847080|ref|YP_006349319.1| - 0.029 14.6 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Abhydrolase_6 PF12697.2 gi|389847081|ref|YP_006349320.1| - 1.6e-19 70.7 1.7 1.9e-19 70.4 1.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389847081|ref|YP_006349320.1| - 7.5e-11 42.0 0.8 1.1e-09 38.1 0.5 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389847081|ref|YP_006349320.1| - 1.6e-08 34.3 0.3 8.3e-08 32.1 0.2 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|389847081|ref|YP_006349320.1| - 0.00023 21.4 0.0 0.00031 21.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Esterase PF00756.15 gi|389847081|ref|YP_006349320.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Putative esterase NAD_binding_8 PF13450.1 gi|389847081|ref|YP_006349320.1| - 0.044 13.8 0.7 0.091 12.7 0.5 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF2048 PF09752.4 gi|389847081|ref|YP_006349320.1| - 0.044 12.6 0.1 0.057 12.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Esterase_phd PF10503.4 gi|389847081|ref|YP_006349320.1| - 0.052 12.7 0.4 0.15 11.2 0.1 1.8 2 0 0 2 2 2 0 Esterase PHB depolymerase UPF0227 PF05728.7 gi|389847081|ref|YP_006349320.1| - 0.079 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) TP6A_N PF04406.9 gi|389847082|ref|YP_006349321.1| - 3.2e-19 68.3 0.1 6e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|662859469|ref|YP_006349322.2| - 1.3e-64 216.5 0.0 3.1e-64 215.3 0.0 1.7 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|662859469|ref|YP_006349322.2| - 9.2e-17 60.7 0.1 2.8e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|662859469|ref|YP_006349322.2| - 8.6e-14 51.3 0.0 5.5e-13 48.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|662859469|ref|YP_006349322.2| - 5.3e-05 22.9 0.2 0.00079 19.2 0.0 2.9 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|662859469|ref|YP_006349322.2| - 0.049 13.3 0.0 0.33 10.7 0.0 2.2 2 0 0 2 2 2 0 GHKL domain MAF_flag10 PF01973.13 gi|662859469|ref|YP_006349322.2| - 0.12 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF115 DNA_gyraseB PF00204.20 gi|389847084|ref|YP_006349323.1| - 1.5e-60 203.3 0.1 2.8e-60 202.4 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|389847084|ref|YP_006349323.1| - 1.2e-29 101.8 0.0 2.4e-29 100.8 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|389847084|ref|YP_006349323.1| - 4.7e-26 90.6 0.1 1.3e-25 89.2 0.0 1.8 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|389847084|ref|YP_006349323.1| - 6e-20 71.0 0.0 1.6e-19 69.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|389847084|ref|YP_006349323.1| - 3.1e-05 23.6 0.0 8e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|389847085|ref|YP_006349324.1| - 1.6e-153 511.5 0.0 2.1e-153 511.2 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|389847085|ref|YP_006349324.1| - 1.8e-69 228.8 7.6 2.2e-13 49.2 0.1 6.3 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF4233 PF14017.1 gi|389847086|ref|YP_006349325.1| - 0.017 15.0 1.4 0.017 15.0 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) BacteriocIIc_cy PF12173.3 gi|389847086|ref|YP_006349325.1| - 0.021 14.8 0.1 0.021 14.8 0.1 1.9 2 1 0 2 2 2 0 Bacteriocin class IIc cyclic gassericin A-like FtsX PF02687.16 gi|389847086|ref|YP_006349325.1| - 1.6 8.4 8.7 7.7 6.3 6.1 2.0 1 1 0 1 1 1 0 FtsX-like permease family PhaG_MnhG_YufB PF03334.9 gi|389847086|ref|YP_006349325.1| - 3.4 7.7 6.8 1.1 9.3 0.8 2.1 2 0 0 2 2 2 0 Na+/H+ antiporter subunit NUDIX PF00293.23 gi|389847087|ref|YP_006349326.1| - 6e-13 48.6 0.1 7e-13 48.3 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Arginase PF00491.16 gi|389847088|ref|YP_006349327.1| - 2.9e-75 253.1 6.3 3.5e-75 252.8 4.4 1.0 1 0 0 1 1 1 1 Arginase family Epimerase PF01370.16 gi|389847089|ref|YP_006349328.1| - 3e-45 154.4 0.1 3.8e-45 154.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|389847089|ref|YP_006349328.1| - 6.2e-17 61.4 0.0 7.2e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|389847089|ref|YP_006349328.1| - 1.6e-11 43.6 0.0 5.8e-09 35.2 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|389847089|ref|YP_006349328.1| - 3.1e-11 42.5 0.0 5.6e-11 41.6 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|389847089|ref|YP_006349328.1| - 1.8e-10 40.1 0.1 1.8e-07 30.3 0.0 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|389847089|ref|YP_006349328.1| - 4e-06 26.8 0.4 0.0064 16.4 0.1 2.6 1 1 1 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|389847089|ref|YP_006349328.1| - 3.4e-05 23.9 0.0 4.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|389847089|ref|YP_006349328.1| - 0.021 14.4 0.1 0.52 9.9 0.0 2.2 2 0 0 2 2 2 0 KR domain 2OG-FeII_Oxy_4 PF13661.1 gi|389847089|ref|YP_006349328.1| - 0.03 13.9 0.1 0.065 12.8 0.0 1.5 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily HrcA_DNA-bdg PF03444.10 gi|389847090|ref|YP_006349329.1| - 1.5e-38 130.1 0.1 2e-38 129.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|389847090|ref|YP_006349329.1| - 1.4e-09 37.9 0.0 2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|389847090|ref|YP_006349329.1| - 2e-07 30.5 0.0 3.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|389847090|ref|YP_006349329.1| - 0.0026 17.4 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_terminase PF10668.4 gi|389847090|ref|YP_006349329.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit MarR_2 PF12802.2 gi|389847090|ref|YP_006349329.1| - 0.068 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|389847090|ref|YP_006349329.1| - 0.087 12.2 0.1 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pyr_redox_2 PF07992.9 gi|389847091|ref|YP_006349330.1| - 1.2e-20 74.2 0.0 2.4e-20 73.2 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389847091|ref|YP_006349330.1| - 1.7e-08 34.7 0.4 4.4e-07 30.2 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389847091|ref|YP_006349330.1| - 6.2e-06 26.4 0.3 0.0029 17.6 0.1 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|389847091|ref|YP_006349330.1| - 0.0038 16.8 0.2 1.1 8.8 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|389847091|ref|YP_006349330.1| - 0.0041 16.9 0.8 2.6 7.7 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|389847091|ref|YP_006349330.1| - 0.022 14.7 0.3 6.6 6.8 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain PNP_UDP_1 PF01048.15 gi|389847092|ref|YP_006349331.1| - 6.1e-48 162.8 2.5 7.2e-48 162.6 1.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF4434 PF14488.1 gi|389847092|ref|YP_006349331.1| - 0.12 12.0 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) dCMP_cyt_deam_1 PF00383.17 gi|389847093|ref|YP_006349332.1| - 1.6e-17 63.0 0.2 2.1e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|389847093|ref|YP_006349332.1| - 1.1e-12 47.9 0.2 1.6e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|389847093|ref|YP_006349332.1| - 0.029 14.0 0.1 0.039 13.5 0.1 1.2 1 0 0 1 1 1 0 MafB19-like deaminase DUF3169 PF11368.3 gi|662859470|ref|YP_006349333.2| - 0.66 9.1 2.8 0.77 8.9 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) CcoS PF03597.10 gi|662859470|ref|YP_006349333.2| - 6.6 6.2 8.5 1.9 8.0 2.0 2.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Acetyltransf_1 PF00583.19 gi|389847096|ref|YP_006349335.1| - 8.5e-08 32.1 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|389847096|ref|YP_006349335.1| - 2e-05 24.4 0.0 3.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847096|ref|YP_006349335.1| - 0.00077 19.5 0.0 0.0011 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847096|ref|YP_006349335.1| - 0.00091 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|389847096|ref|YP_006349335.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.23 gi|389847097|ref|YP_006349336.1| - 3.4e-76 256.2 0.0 4.6e-76 255.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389847097|ref|YP_006349336.1| - 2.3e-17 63.6 0.2 5.8e-17 62.4 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SDF PF00375.13 gi|389847098|ref|YP_006349337.1| - 9.4e-119 396.6 29.7 1.1e-118 396.4 20.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family AMP-binding PF00501.23 gi|389847099|ref|YP_006349338.1| - 1.3e-11 43.5 0.0 9.7e-07 27.5 0.0 2.7 1 1 1 2 2 2 2 AMP-binding enzyme Cupin_2 PF07883.6 gi|389847100|ref|YP_006349339.1| - 7.7e-12 44.5 0.9 1.2e-11 43.9 0.7 1.4 1 1 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.1 gi|389847100|ref|YP_006349339.1| - 1.6e-06 27.7 0.0 1.9e-06 27.5 0.0 1.0 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|389847100|ref|YP_006349339.1| - 3.1e-06 26.4 0.5 1.6e-05 24.2 0.1 2.1 1 1 2 3 3 3 1 Protein of unknown function (DUF861) FdtA PF05523.6 gi|389847100|ref|YP_006349339.1| - 0.0013 18.2 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_6 PF12852.2 gi|389847100|ref|YP_006349339.1| - 0.0016 18.0 0.1 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.7 gi|389847100|ref|YP_006349339.1| - 0.0042 16.9 0.0 0.0044 16.9 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.14 gi|389847100|ref|YP_006349339.1| - 0.0047 16.6 0.0 0.0062 16.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|389847100|ref|YP_006349339.1| - 0.047 13.7 0.0 0.059 13.4 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain CTDII PF01556.13 gi|389847101|ref|YP_006349340.1| - 1.3e-32 111.5 0.0 5.1e-23 80.7 0.0 2.9 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|389847101|ref|YP_006349340.1| - 1.1e-24 85.9 4.7 2e-24 85.0 3.3 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|389847101|ref|YP_006349340.1| - 2e-15 56.5 18.7 3.8e-15 55.6 12.9 1.5 1 0 0 1 1 1 1 DnaJ central domain DZR PF12773.2 gi|389847101|ref|YP_006349340.1| - 0.69 9.7 13.0 2 8.2 9.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon Bindin PF02084.10 gi|389847101|ref|YP_006349340.1| - 1.9 8.4 12.0 0.057 13.4 3.1 2.3 3 0 0 3 3 3 0 Bindin HSP70 PF00012.15 gi|389847103|ref|YP_006349342.1| - 7.2e-242 803.6 14.4 5.7e-212 704.8 7.6 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|389847103|ref|YP_006349342.1| - 2.7e-20 72.2 0.3 2.7e-20 72.2 0.2 2.1 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|389847103|ref|YP_006349342.1| - 0.0043 16.0 0.0 0.0095 14.9 0.0 1.5 1 0 0 1 1 1 1 StbA protein FGGY_C PF02782.11 gi|389847103|ref|YP_006349342.1| - 0.0053 16.4 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|389847103|ref|YP_006349342.1| - 0.044 13.6 3.0 12 5.7 0.0 4.0 3 1 0 3 3 3 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|389847103|ref|YP_006349342.1| - 0.066 12.2 6.5 0.18 10.9 0.0 3.4 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase Abhydrolase_6 PF12697.2 gi|389847104|ref|YP_006349343.1| - 4.6e-08 33.2 1.6 6.1e-08 32.8 1.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389847104|ref|YP_006349343.1| - 3.9e-06 26.6 0.0 9.1e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family GrpE PF01025.14 gi|389847105|ref|YP_006349344.1| - 5.2e-39 133.4 18.3 2.9e-38 131.0 12.7 2.1 1 1 0 1 1 1 1 GrpE ADIP PF11559.3 gi|389847105|ref|YP_006349344.1| - 0.00057 19.8 7.1 0.0011 18.9 4.9 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|389847105|ref|YP_006349344.1| - 0.0012 18.5 5.9 0.0012 18.5 4.1 1.9 2 0 0 2 2 1 1 TATA element modulatory factor 1 DNA binding Occludin_ELL PF07303.8 gi|389847105|ref|YP_006349344.1| - 0.0021 18.7 3.8 0.0037 17.9 2.3 1.6 1 1 0 1 1 1 1 Occludin homology domain Tho2 PF11262.3 gi|389847105|ref|YP_006349344.1| - 0.0063 15.6 0.5 0.0084 15.1 0.4 1.1 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 TMCO5 PF14992.1 gi|389847105|ref|YP_006349344.1| - 0.0079 15.3 10.3 0.011 14.8 7.2 1.2 1 0 0 1 1 1 1 TMCO5 family Fib_alpha PF08702.5 gi|389847105|ref|YP_006349344.1| - 0.0088 16.1 2.1 0.015 15.4 1.5 1.5 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|389847105|ref|YP_006349344.1| - 0.0091 15.6 8.3 0.012 15.2 5.7 1.4 1 0 0 1 1 1 1 IncA protein Syntaxin_2 PF14523.1 gi|389847105|ref|YP_006349344.1| - 0.01 15.8 0.9 0.023 14.7 0.6 1.6 1 0 0 1 1 1 0 Syntaxin-like protein DivIVA PF05103.8 gi|389847105|ref|YP_006349344.1| - 0.014 15.4 10.4 0.014 15.4 7.2 2.2 2 0 0 2 2 1 0 DivIVA protein Reo_sigmaC PF04582.7 gi|389847105|ref|YP_006349344.1| - 0.022 13.9 0.8 0.026 13.6 0.6 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|389847105|ref|YP_006349344.1| - 0.025 14.4 12.6 0.044 13.5 8.8 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) THOC7 PF05615.8 gi|389847105|ref|YP_006349344.1| - 0.036 14.3 8.3 0.06 13.6 5.8 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 Mnd1 PF03962.10 gi|389847105|ref|YP_006349344.1| - 0.037 13.6 10.3 0.046 13.3 6.6 1.5 1 1 0 1 1 1 0 Mnd1 family STAT_alpha PF01017.15 gi|389847105|ref|YP_006349344.1| - 0.04 13.6 2.0 0.057 13.1 1.4 1.3 1 0 0 1 1 1 0 STAT protein, all-alpha domain CRISPR_Cse1 PF09481.5 gi|389847105|ref|YP_006349344.1| - 0.073 11.8 7.5 0.087 11.5 5.2 1.3 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) Ax_dynein_light PF10211.4 gi|389847105|ref|YP_006349344.1| - 0.095 12.5 7.0 0.24 11.1 4.8 1.8 1 0 0 1 1 1 0 Axonemal dynein light chain TBPIP PF07106.8 gi|389847105|ref|YP_006349344.1| - 0.11 12.0 3.8 0.16 11.4 2.6 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|389847105|ref|YP_006349344.1| - 0.13 10.7 6.3 0.17 10.3 4.4 1.3 1 0 0 1 1 1 0 AAA domain PilJ PF13675.1 gi|389847105|ref|YP_006349344.1| - 0.23 11.7 13.1 0.036 14.3 3.4 2.9 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term APG6 PF04111.7 gi|389847105|ref|YP_006349344.1| - 0.26 10.2 11.5 0.34 9.9 8.0 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Spectrin PF00435.16 gi|389847105|ref|YP_006349344.1| - 0.3 11.3 8.4 0.24 11.7 4.6 1.8 2 0 0 2 2 1 0 Spectrin repeat Syntaxin PF00804.20 gi|389847105|ref|YP_006349344.1| - 0.33 11.1 6.3 0.39 10.9 3.5 1.8 1 1 0 1 1 1 0 Syntaxin V_ATPase_I PF01496.14 gi|389847105|ref|YP_006349344.1| - 0.42 8.4 3.2 0.42 8.4 2.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|389847105|ref|YP_006349344.1| - 0.56 9.0 4.4 0.68 8.8 3.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|389847105|ref|YP_006349344.1| - 0.59 9.9 14.0 0.15 11.8 4.0 2.9 2 1 1 3 3 3 0 Prefoldin subunit SlyX PF04102.7 gi|389847105|ref|YP_006349344.1| - 0.65 10.4 6.2 4.5 7.7 4.3 2.4 1 1 0 1 1 1 0 SlyX TMPIT PF07851.8 gi|389847105|ref|YP_006349344.1| - 0.73 8.8 2.8 1 8.3 2.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein Macoilin PF09726.4 gi|389847105|ref|YP_006349344.1| - 1.1 7.3 10.9 1.4 7.1 7.6 1.0 1 0 0 1 1 1 0 Transmembrane protein DivIC PF04977.10 gi|389847105|ref|YP_006349344.1| - 1.5 8.3 14.8 0.12 11.8 1.7 2.7 2 1 1 3 3 2 0 Septum formation initiator FUSC PF04632.7 gi|389847105|ref|YP_006349344.1| - 1.9 6.8 10.3 2 6.7 7.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Syntaxin-6_N PF09177.6 gi|389847105|ref|YP_006349344.1| - 2 8.8 9.7 1.4 9.3 0.4 2.9 1 1 1 3 3 2 0 Syntaxin 6, N-terminal OmpH PF03938.9 gi|389847105|ref|YP_006349344.1| - 2.1 8.2 17.1 4.2 7.2 11.7 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF1423 PF07227.6 gi|389847105|ref|YP_006349344.1| - 2.5 6.6 12.9 3.4 6.2 9.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) DUF972 PF06156.8 gi|389847105|ref|YP_006349344.1| - 2.6 8.4 8.8 0.71 10.2 3.4 2.1 2 1 1 3 3 2 0 Protein of unknown function (DUF972) ERM PF00769.14 gi|389847105|ref|YP_006349344.1| - 3.8 6.9 24.7 7.2 6.0 17.1 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Spc24 PF08286.6 gi|389847105|ref|YP_006349344.1| - 4 7.1 12.8 1.4 8.6 0.3 2.8 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 TATR PF03430.8 gi|389847105|ref|YP_006349344.1| - 4.5 5.8 12.6 5.7 5.4 8.7 1.1 1 0 0 1 1 1 0 Trans-activating transcriptional regulator DUF334 PF03904.8 gi|389847105|ref|YP_006349344.1| - 4.5 6.5 7.3 37 3.5 4.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF334) PRP38_assoc PF12871.2 gi|389847105|ref|YP_006349344.1| - 5.1 7.6 20.0 1 9.9 4.2 2.5 2 1 1 3 3 2 0 Pre-mRNA-splicing factor 38-associated hydrophilic C-term Sugarporin_N PF11471.3 gi|389847105|ref|YP_006349344.1| - 5.5 6.7 11.9 0.63 9.7 1.3 3.0 1 1 2 3 3 3 0 Maltoporin periplasmic N-terminal extension bZIP_2 PF07716.10 gi|389847105|ref|YP_006349344.1| - 5.5 6.8 14.9 0.58 10.0 0.2 2.8 3 0 0 3 3 2 0 Basic region leucine zipper DUF2937 PF11157.3 gi|389847105|ref|YP_006349344.1| - 5.6 6.2 6.5 12 5.1 4.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) CENP-Q PF13094.1 gi|389847105|ref|YP_006349344.1| - 5.7 6.9 14.3 4.6 7.2 8.7 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Peptidase_S64 PF08192.6 gi|389847105|ref|YP_006349344.1| - 9 4.4 10.6 10 4.2 7.3 1.0 1 0 0 1 1 1 0 Peptidase family S64 PAC2 PF09754.4 gi|389847106|ref|YP_006349345.1| - 5.4e-40 137.5 0.0 6.3e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family EcsC PF12787.2 gi|389847106|ref|YP_006349345.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 EcsC protein family Nol1_Nop2_Fmu PF01189.12 gi|389847107|ref|YP_006349346.1| - 7.7e-54 182.9 0.0 8.9e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|389847107|ref|YP_006349346.1| - 1.9e-07 30.7 0.0 2.9e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389847107|ref|YP_006349346.1| - 3.2e-06 27.6 0.0 1.6e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389847107|ref|YP_006349346.1| - 8.1e-06 25.8 0.0 2.1e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|389847107|ref|YP_006349346.1| - 0.0063 16.5 0.0 0.0092 15.9 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Nol1_Nop2_Fmu_2 PF13636.1 gi|389847108|ref|YP_006349347.1| - 1.1e-16 60.7 0.0 1.4e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis DUF2313 PF10076.4 gi|389847108|ref|YP_006349347.1| - 0.18 11.1 0.6 0.28 10.5 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) DUF790 PF05626.6 gi|662859471|ref|YP_006349348.2| - 1.8e-94 316.4 0.0 2.1e-94 316.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Glyco_hydro_2 PF00703.16 gi|389847110|ref|YP_006349349.1| - 0.044 14.2 0.7 0.056 13.8 0.5 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 2 DUF4307 PF14155.1 gi|389847110|ref|YP_006349349.1| - 0.56 10.0 3.4 1 9.1 2.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) ResIII PF04851.10 gi|662859472|ref|YP_006349350.2| - 1e-21 77.5 0.0 6.7e-20 71.6 0.0 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|662859472|ref|YP_006349350.2| - 7.8e-17 60.9 0.1 2e-16 59.6 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|662859472|ref|YP_006349350.2| - 9.1e-10 38.2 0.0 3.2e-09 36.5 0.0 1.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|662859472|ref|YP_006349350.2| - 0.084 12.8 0.0 0.61 10.0 0.0 2.3 2 0 0 2 2 2 0 Helicase C-terminal domain Aminotran_1_2 PF00155.16 gi|389847113|ref|YP_006349352.1| - 2.5e-69 233.9 0.0 2.8e-69 233.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|389847113|ref|YP_006349352.1| - 3e-15 56.1 0.1 5.1e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|389847113|ref|YP_006349352.1| - 2.4e-10 40.0 0.0 5.7e-10 38.8 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|389847113|ref|YP_006349352.1| - 2.8e-09 35.7 0.0 5e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|389847113|ref|YP_006349352.1| - 1.2e-08 34.1 0.0 1.7e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|389847113|ref|YP_006349352.1| - 0.085 11.6 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III AAA_10 PF12846.2 gi|389847113|ref|YP_006349352.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Na_H_antiporter PF03553.9 gi|389847114|ref|YP_006349353.1| - 8.3e-63 212.2 29.1 1.3e-59 201.7 6.7 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family TrkA_C PF02080.16 gi|389847115|ref|YP_006349354.1| - 4.9e-13 48.4 2.8 1.2e-12 47.2 1.9 1.7 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.1 gi|389847115|ref|YP_006349354.1| - 3.9e-10 39.1 0.3 8.8e-10 37.9 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389847115|ref|YP_006349354.1| - 1.4e-09 37.1 0.0 2.5e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389847115|ref|YP_006349354.1| - 3.3e-05 23.4 0.0 9.7e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|389847115|ref|YP_006349354.1| - 5.4e-05 22.9 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|389847115|ref|YP_006349354.1| - 0.0015 18.0 0.1 0.0045 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|389847115|ref|YP_006349354.1| - 0.0086 16.0 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389847115|ref|YP_006349354.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HrcA_DNA-bdg PF03444.10 gi|389847115|ref|YP_006349354.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RPA_C PF08784.6 gi|389847115|ref|YP_006349354.1| - 0.022 15.1 0.0 0.21 12.0 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal HTH_CodY PF08222.6 gi|389847115|ref|YP_006349354.1| - 0.026 13.8 0.0 0.057 12.7 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|389847115|ref|YP_006349354.1| - 0.028 14.7 0.0 0.086 13.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|389847115|ref|YP_006349354.1| - 0.047 13.3 0.0 0.089 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|389847115|ref|YP_006349354.1| - 0.069 12.4 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MarR PF01047.17 gi|389847115|ref|YP_006349354.1| - 0.14 11.9 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 1 0 MarR family Vps55 PF04133.9 gi|389847116|ref|YP_006349355.1| - 5.3 6.8 8.3 0.5 10.1 1.6 2.1 2 1 0 2 2 2 0 Vacuolar protein sorting 55 PGA_cap PF09587.5 gi|389847117|ref|YP_006349356.1| - 2.8e-59 200.4 0.0 3.4e-59 200.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Peripla_BP_2 PF01497.13 gi|389847119|ref|YP_006349358.1| - 2e-14 53.2 0.0 3.3e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389847119|ref|YP_006349358.1| - 0.12 12.4 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL PF07366.7 gi|389847120|ref|YP_006349359.1| - 8.1e-33 112.6 0.2 9e-33 112.5 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|389847120|ref|YP_006349359.1| - 2.5e-21 76.0 0.5 2.9e-21 75.7 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|389847120|ref|YP_006349359.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) MMR_HSR1_C PF08438.5 gi|389847121|ref|YP_006349360.1| - 2.6e-31 108.0 0.0 4.1e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|389847121|ref|YP_006349360.1| - 9e-16 57.8 0.0 6.4e-15 55.1 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|389847121|ref|YP_006349360.1| - 2.9e-11 43.0 0.0 6.2e-11 41.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|389847121|ref|YP_006349360.1| - 1e-08 34.6 0.0 1.5e-06 27.5 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|389847121|ref|YP_006349360.1| - 0.0089 15.4 0.0 0.11 11.8 0.0 2.6 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain UPF0181 PF03701.9 gi|389847121|ref|YP_006349360.1| - 0.019 14.2 0.3 0.053 12.8 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) DUF4349 PF14257.1 gi|389847122|ref|YP_006349361.1| - 6.6e-72 241.8 2.9 8.1e-72 241.5 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CENP-F_leu_zip PF10473.4 gi|389847122|ref|YP_006349361.1| - 0.00024 20.9 4.5 0.00024 20.9 3.1 1.5 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.10 gi|389847122|ref|YP_006349361.1| - 0.0061 16.0 9.6 0.15 11.5 1.1 3.2 2 1 1 3 3 3 2 Septum formation initiator APG6 PF04111.7 gi|389847122|ref|YP_006349361.1| - 0.015 14.3 2.8 0.024 13.7 2.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Osmo_CC PF08946.5 gi|389847122|ref|YP_006349361.1| - 0.026 14.5 5.6 1.3 9.0 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil MscS_porin PF12795.2 gi|389847122|ref|YP_006349361.1| - 0.032 13.5 8.1 0.047 13.0 5.6 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Laminin_II PF06009.7 gi|389847122|ref|YP_006349361.1| - 0.045 13.5 5.0 0.14 11.8 3.4 1.8 1 1 0 1 1 1 0 Laminin Domain II V_ATPase_I PF01496.14 gi|389847122|ref|YP_006349361.1| - 0.053 11.3 0.6 0.081 10.7 0.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4201 PF13870.1 gi|389847122|ref|YP_006349361.1| - 0.073 12.5 2.9 0.12 11.7 2.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) TPR_MLP1_2 PF07926.7 gi|389847122|ref|YP_006349361.1| - 0.074 12.7 4.7 0.093 12.4 2.6 1.6 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.15 gi|389847122|ref|YP_006349361.1| - 0.076 12.7 8.3 0.77 9.5 1.2 2.7 2 1 1 3 3 3 0 Prefoldin subunit GAS PF13851.1 gi|389847122|ref|YP_006349361.1| - 0.082 12.1 4.1 0.15 11.2 2.9 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF1664 PF07889.7 gi|389847122|ref|YP_006349361.1| - 0.097 12.4 2.5 0.18 11.5 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4140 PF13600.1 gi|389847122|ref|YP_006349361.1| - 0.099 13.1 8.4 1 9.8 1.4 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) LPAM_1 PF08139.7 gi|389847122|ref|YP_006349361.1| - 0.14 12.4 1.0 0.41 10.9 0.7 1.9 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF2730 PF10805.3 gi|389847122|ref|YP_006349361.1| - 0.16 11.7 2.6 0.97 9.1 1.9 2.2 2 1 0 2 2 1 0 Protein of unknown function (DUF2730) FlxA PF14282.1 gi|389847122|ref|YP_006349361.1| - 0.17 11.8 1.2 0.37 10.7 0.8 1.5 1 0 0 1 1 1 0 FlxA-like protein Spc7 PF08317.6 gi|389847122|ref|YP_006349361.1| - 0.2 10.2 3.5 0.33 9.5 2.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein AATF-Che1 PF13339.1 gi|389847122|ref|YP_006349361.1| - 0.21 11.7 2.4 0.19 11.9 0.8 1.5 2 0 0 2 2 1 0 Apoptosis antagonizing transcription factor M PF02370.11 gi|389847122|ref|YP_006349361.1| - 0.21 12.0 2.2 10 6.8 0.0 2.9 2 1 0 2 2 2 0 M protein repeat Baculo_PEP_C PF04513.7 gi|389847122|ref|YP_006349361.1| - 0.25 11.1 3.2 0.96 9.2 2.1 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Snapin_Pallidin PF14712.1 gi|389847122|ref|YP_006349361.1| - 0.27 11.5 4.7 0.58 10.4 3.3 1.5 1 0 0 1 1 1 0 Snapin/Pallidin NPV_P10 PF05531.7 gi|389847122|ref|YP_006349361.1| - 0.3 11.3 5.7 2.8 8.2 1.1 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|389847122|ref|YP_006349361.1| - 0.37 10.4 7.7 1.8 8.3 0.5 2.5 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 XhlA PF10779.4 gi|389847122|ref|YP_006349361.1| - 0.4 10.6 3.7 3.1 7.7 2.6 2.3 1 1 0 1 1 1 0 Haemolysin XhlA bZIP_2 PF07716.10 gi|389847122|ref|YP_006349361.1| - 0.47 10.3 3.6 2.9 7.7 0.2 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Prefoldin_3 PF13758.1 gi|389847122|ref|YP_006349361.1| - 0.48 10.2 3.5 1.4 8.7 1.7 2.0 2 0 0 2 2 2 0 Prefoldin subunit HR1 PF02185.11 gi|389847122|ref|YP_006349361.1| - 0.7 9.6 5.9 1.3 8.8 0.8 2.3 1 1 1 2 2 2 0 Hr1 repeat BLOC1_2 PF10046.4 gi|389847122|ref|YP_006349361.1| - 0.72 10.0 5.0 0.64 10.1 2.4 1.6 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.6 gi|389847122|ref|YP_006349361.1| - 0.74 9.6 4.9 0.8 9.5 2.5 1.7 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MerR-DNA-bind PF09278.6 gi|389847122|ref|YP_006349361.1| - 0.79 10.1 10.4 1.2 9.5 1.4 2.5 1 1 1 2 2 2 0 MerR, DNA binding DUF4200 PF13863.1 gi|389847122|ref|YP_006349361.1| - 1.4 8.9 6.0 10 6.1 3.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Viral_P18 PF04521.8 gi|389847122|ref|YP_006349361.1| - 1.4 8.3 4.9 3.2 7.2 0.6 2.2 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein IFT20 PF14931.1 gi|389847122|ref|YP_006349361.1| - 4.9 7.0 7.8 5.8 6.8 0.8 2.5 2 1 1 3 3 3 0 Intraflagellar transport complex B, subunit 20 SlyX PF04102.7 gi|389847122|ref|YP_006349361.1| - 7.6 6.9 6.6 15 6.0 0.9 2.4 1 1 1 2 2 2 0 SlyX Bactofilin PF04519.8 gi|389847123|ref|YP_006349362.1| - 4.9e-12 45.7 5.4 1.8e-08 34.3 0.2 4.0 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|389847123|ref|YP_006349362.1| - 0.0015 17.9 12.7 1.6 8.4 0.0 6.4 6 1 1 7 7 7 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389847123|ref|YP_006349362.1| - 1.5 8.4 8.0 8.6 6.0 0.0 3.9 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase VitD-bind_III PF09164.5 gi|389847124|ref|YP_006349363.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Vitamin D binding protein, domain III DUF3179 PF11376.3 gi|662859473|ref|YP_006349365.2| - 6.5e-78 261.5 0.0 8.3e-78 261.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) TAT_signal PF10518.4 gi|662859473|ref|YP_006349365.2| - 8.9 6.6 10.6 0.17 11.9 2.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.21 gi|389847127|ref|YP_006349366.1| - 7.3e-20 71.3 0.0 9.8e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389847127|ref|YP_006349366.1| - 2.6e-09 37.2 0.1 3.2e-09 36.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RNase_H_2 PF13482.1 gi|389847129|ref|YP_006349368.1| - 2.3e-36 125.0 0.0 3.1e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|389847129|ref|YP_006349368.1| - 9.9e-05 21.8 0.0 0.00018 21.0 0.0 1.5 1 1 0 1 1 1 1 3'-5' exonuclease HHH_5 PF14520.1 gi|389847129|ref|YP_006349368.1| - 0.016 15.3 0.0 0.62 10.2 0.0 3.0 3 1 0 3 3 3 0 Helix-hairpin-helix domain DUF159 PF02586.9 gi|662859474|ref|YP_006349369.2| - 1.1e-60 204.6 0.0 1.3e-60 204.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 Lipase_GDSL_2 PF13472.1 gi|389847131|ref|YP_006349370.1| - 8.9e-09 35.7 0.8 5.3e-08 33.1 0.6 2.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family RHH_1 PF01402.16 gi|389847135|ref|YP_006349374.1| - 0.023 14.5 0.1 0.066 13.1 0.0 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family HemN_C PF06969.11 gi|389847135|ref|YP_006349374.1| - 0.045 13.8 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain Phage_integrase PF00589.17 gi|389847136|ref|YP_006349375.1| - 1.5e-15 57.2 0.0 2.5e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|389847136|ref|YP_006349375.1| - 7.9e-09 35.7 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|389847136|ref|YP_006349375.1| - 1.9e-07 31.1 0.2 4.1e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Ferritin PF00210.19 gi|662859475|ref|YP_006349378.2| - 2.9e-26 91.9 6.0 3.5e-26 91.6 4.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF4003 PF13170.1 gi|662859475|ref|YP_006349378.2| - 0.045 13.0 0.1 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4003) MEA1 PF06910.6 gi|662859475|ref|YP_006349378.2| - 0.058 13.0 0.6 4.6 6.8 0.3 2.4 1 1 1 2 2 2 0 Male enhanced antigen 1 (MEA1) Osmo_CC PF08946.5 gi|662859475|ref|YP_006349378.2| - 0.086 12.8 1.2 0.086 12.8 0.8 3.3 2 1 2 4 4 4 0 Osmosensory transporter coiled coil DUF2203 PF09969.4 gi|662859475|ref|YP_006349378.2| - 0.1 12.7 0.3 0.18 12.0 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF1451 PF07295.6 gi|662859475|ref|YP_006349378.2| - 2.8 7.6 5.4 6.3 6.5 1.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Gln-synt_C PF00120.19 gi|389847140|ref|YP_006349379.1| - 2.5e-61 207.0 0.0 3.3e-61 206.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Peripla_BP_2 PF01497.13 gi|389847141|ref|YP_006349380.1| - 2.2e-13 49.8 0.0 3.2e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Gln-synt_C PF00120.19 gi|389847142|ref|YP_006349381.1| - 9.2e-71 238.0 0.0 1.1e-70 237.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Peptidase_C58 PF03543.9 gi|389847142|ref|YP_006349381.1| - 0.18 11.2 0.1 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen MatE PF01554.13 gi|389847143|ref|YP_006349382.1| - 6.6e-52 175.3 35.6 3.3e-30 104.8 5.7 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|389847143|ref|YP_006349382.1| - 5.2e-07 29.5 1.7 5.2e-07 29.5 1.2 4.4 5 1 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_deac_1 PF01522.16 gi|389847144|ref|YP_006349383.1| - 9e-23 80.2 0.0 1.3e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Methyltransf_6 PF03737.10 gi|389847145|ref|YP_006349384.1| - 1.4e-29 102.9 1.3 1.8e-29 102.6 0.9 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase Peripla_BP_2 PF01497.13 gi|389847146|ref|YP_006349385.1| - 9.2e-18 64.2 0.0 1.4e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389847146|ref|YP_006349385.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GvpO PF05800.6 gi|389847147|ref|YP_006349386.1| - 1.7e-37 127.3 0.3 2.2e-37 126.9 0.2 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO AAA_5 PF07728.9 gi|389847148|ref|YP_006349387.1| - 5.9e-19 68.1 0.0 1e-17 64.1 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|389847148|ref|YP_006349387.1| - 1.3e-05 25.4 0.0 8.4e-05 22.7 0.0 2.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|389847148|ref|YP_006349387.1| - 2.7e-05 23.7 0.0 0.029 13.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|389847148|ref|YP_006349387.1| - 5e-05 23.4 0.0 0.00043 20.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|389847148|ref|YP_006349387.1| - 0.00049 19.5 0.0 0.0011 18.4 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|389847148|ref|YP_006349387.1| - 0.0006 20.6 0.3 0.024 15.4 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389847148|ref|YP_006349387.1| - 0.00067 19.6 0.1 0.013 15.4 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|389847148|ref|YP_006349387.1| - 0.00072 19.3 0.0 0.0068 16.1 0.0 2.3 1 1 0 1 1 1 1 Archaeal ATPase TIP49 PF06068.8 gi|389847148|ref|YP_006349387.1| - 0.0035 16.1 0.0 0.018 13.7 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus ABC_tran PF00005.22 gi|389847148|ref|YP_006349387.1| - 0.0036 17.6 0.0 0.01 16.1 0.0 2.0 1 1 1 2 2 2 1 ABC transporter Sigma54_activ_2 PF14532.1 gi|389847148|ref|YP_006349387.1| - 0.0045 17.0 0.0 0.02 14.9 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|389847148|ref|YP_006349387.1| - 0.0054 16.2 0.0 0.085 12.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|389847148|ref|YP_006349387.1| - 0.0058 16.0 0.1 0.04 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|389847148|ref|YP_006349387.1| - 0.0062 16.4 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain IPT PF01745.11 gi|389847148|ref|YP_006349387.1| - 0.01 15.0 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 Isopentenyl transferase AAA_33 PF13671.1 gi|389847148|ref|YP_006349387.1| - 0.013 15.4 0.2 0.05 13.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|389847148|ref|YP_006349387.1| - 0.014 15.0 0.0 0.049 13.2 0.0 2.0 3 0 0 3 3 2 0 NACHT domain PhoH PF02562.11 gi|389847148|ref|YP_006349387.1| - 0.025 13.8 0.0 0.091 11.9 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.1 gi|389847148|ref|YP_006349387.1| - 0.033 13.9 0.1 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|389847148|ref|YP_006349387.1| - 0.036 14.3 1.3 0.085 13.1 0.0 2.3 3 0 0 3 3 2 0 AAA domain Barstar PF01337.13 gi|389847148|ref|YP_006349387.1| - 0.089 12.6 0.1 0.55 10.1 0.1 2.2 2 0 0 2 2 2 0 Barstar (barnase inhibitor) AAA_7 PF12775.2 gi|389847148|ref|YP_006349387.1| - 0.15 11.1 0.0 1.4 7.9 0.0 2.0 1 1 1 2 2 2 0 P-loop containing dynein motor region D3 Halo_GVPC PF05465.8 gi|389847149|ref|YP_006349388.1| - 7e-70 229.7 59.9 2.2e-12 46.5 3.9 8.0 6 1 1 7 7 7 7 Halobacterial gas vesicle protein C (GVPC) repeat ROS_MUCR PF05443.6 gi|389847149|ref|YP_006349388.1| - 9.7e-07 28.6 0.0 4.1e-06 26.5 0.0 2.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein Bacillus_HBL PF05791.6 gi|389847149|ref|YP_006349388.1| - 0.00017 21.0 3.7 0.032 13.6 0.3 3.3 2 1 2 4 4 4 1 Bacillus haemolytic enterotoxin (HBL) HsbA PF12296.3 gi|389847149|ref|YP_006349388.1| - 0.0002 21.1 0.7 0.0071 16.2 0.5 2.5 1 1 1 2 2 2 1 Hydrophobic surface binding protein A TPR_MLP1_2 PF07926.7 gi|389847149|ref|YP_006349388.1| - 0.00089 19.0 0.3 0.21 11.3 0.0 3.4 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein Apolipoprotein PF01442.13 gi|389847149|ref|YP_006349388.1| - 0.0012 18.4 1.6 0.013 15.0 1.1 2.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain CorA PF01544.13 gi|389847149|ref|YP_006349388.1| - 0.0027 16.7 2.0 1.5 7.7 0.0 2.3 1 1 0 2 2 2 2 CorA-like Mg2+ transporter protein LOH1CR12 PF10158.4 gi|389847149|ref|YP_006349388.1| - 0.0056 16.4 1.7 1.6 8.4 0.0 3.7 1 1 3 4 4 4 1 Tumour suppressor protein Seryl_tRNA_N PF02403.17 gi|389847149|ref|YP_006349388.1| - 0.015 15.3 0.3 6 6.9 0.0 3.6 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain CagZ PF09053.5 gi|389847149|ref|YP_006349388.1| - 0.022 14.0 0.7 0.29 10.4 0.0 2.2 1 1 1 2 2 2 0 CagZ Mnd1 PF03962.10 gi|389847149|ref|YP_006349388.1| - 0.027 14.1 0.1 3.8 7.1 0.1 2.8 1 1 1 3 3 3 0 Mnd1 family TPR_12 PF13424.1 gi|389847149|ref|YP_006349388.1| - 0.029 14.3 0.0 0.09 12.7 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat GAS PF13851.1 gi|389847149|ref|YP_006349388.1| - 0.05 12.8 0.4 2.1 7.4 0.0 3.3 3 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding PilJ PF13675.1 gi|389847149|ref|YP_006349388.1| - 0.14 12.4 3.8 1 9.7 0.2 3.0 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term MutS_III PF05192.13 gi|389847149|ref|YP_006349388.1| - 0.19 11.5 1.1 0.39 10.4 0.4 1.8 1 1 0 1 1 1 0 MutS domain III DUF2274 PF10038.4 gi|389847149|ref|YP_006349388.1| - 0.53 10.4 3.1 29 4.8 0.0 3.6 4 0 0 4 4 3 0 Protein of unknown function (DUF2274) TFIID_20kDa PF03847.8 gi|389847149|ref|YP_006349388.1| - 1.1 9.6 8.9 9 6.6 0.4 4.3 3 2 1 4 4 4 0 Transcription initiation factor TFIID subunit A MMPL PF03176.10 gi|389847149|ref|YP_006349388.1| - 1.2 7.7 5.1 0.86 8.2 0.6 2.3 1 1 1 2 2 2 0 MMPL family Gas_vesicle PF00741.13 gi|389847150|ref|YP_006349389.1| - 5.2e-16 58.2 6.8 6.7e-16 57.8 4.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpD PF07088.6 gi|389847151|ref|YP_006349390.1| - 1.3e-261 868.0 0.0 1.5e-261 867.8 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein KaiC PF06745.8 gi|389847151|ref|YP_006349390.1| - 4.7e-12 45.5 0.0 3.6e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|389847151|ref|YP_006349390.1| - 5.1e-07 29.2 0.0 1.7e-06 27.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389847151|ref|YP_006349390.1| - 0.0023 17.6 0.1 0.0095 15.6 0.1 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|389847151|ref|YP_006349390.1| - 0.0067 16.4 0.1 0.025 14.5 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain PAXNEB PF05625.6 gi|389847151|ref|YP_006349390.1| - 0.066 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.4 gi|389847151|ref|YP_006349390.1| - 0.093 11.6 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PadR PF03551.9 gi|389847152|ref|YP_006349391.1| - 7.1e-08 32.1 0.0 1.4e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|389847152|ref|YP_006349391.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.15 gi|389847152|ref|YP_006349391.1| - 0.063 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|389847152|ref|YP_006349391.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GvpL_GvpF PF06386.6 gi|389847153|ref|YP_006349392.1| - 7.5e-54 182.9 0.4 1e-29 103.9 0.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF Y_phosphatase3C PF13348.1 gi|389847153|ref|YP_006349392.1| - 0.081 13.0 0.2 0.79 9.8 0.0 2.6 3 0 0 3 3 3 0 Tyrosine phosphatase family C-terminal region GvpG PF05120.7 gi|389847154|ref|YP_006349393.1| - 4.4e-05 23.2 4.3 4.9e-05 23.0 3.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.8 gi|389847154|ref|YP_006349393.1| - 0.031 14.5 2.2 0.032 14.4 1.5 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 SAC3_GANP PF03399.11 gi|389847154|ref|YP_006349393.1| - 0.078 12.5 0.5 0.093 12.2 0.3 1.1 1 0 0 1 1 1 0 SAC3/GANP/Nin1/mts3/eIF-3 p25 family DUF2590 PF10761.4 gi|389847154|ref|YP_006349393.1| - 0.11 12.1 0.8 0.12 12.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2590) GvpH PF05455.6 gi|389847155|ref|YP_006349394.1| - 1.8e-83 278.5 8.7 1.8e-83 278.5 6.0 1.5 2 0 0 2 2 2 1 GvpH DUF3971 PF13116.1 gi|389847155|ref|YP_006349394.1| - 0.059 12.7 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function SH3BGR PF04908.10 gi|389847156|ref|YP_006349395.1| - 0.038 13.9 0.7 0.077 12.9 0.5 1.5 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Neur_chan_memb PF02932.11 gi|389847156|ref|YP_006349395.1| - 2.7 7.8 12.1 2.9 7.6 8.4 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region SAPS PF04499.10 gi|389847156|ref|YP_006349395.1| - 3.4 6.2 8.7 3.4 6.1 6.0 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Borrelia_P83 PF05262.6 gi|389847156|ref|YP_006349395.1| - 7 4.8 11.1 7.7 4.6 7.7 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Gas_vesicle PF00741.13 gi|389847157|ref|YP_006349396.1| - 2.2e-16 59.4 3.3 2.8e-16 59.0 2.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2219 PF09982.4 gi|389847157|ref|YP_006349396.1| - 0.073 11.8 0.0 0.079 11.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2219) GvpK PF05121.7 gi|389847158|ref|YP_006349397.1| - 2.3e-29 101.0 6.0 2.8e-29 100.7 4.1 1.1 1 0 0 1 1 1 1 Gas vesicle protein K FlxA PF14282.1 gi|389847158|ref|YP_006349397.1| - 0.0038 17.1 0.3 0.0046 16.8 0.2 1.2 1 0 0 1 1 1 1 FlxA-like protein Hpt PF01627.18 gi|389847158|ref|YP_006349397.1| - 0.04 13.9 1.5 0.1 12.5 0.9 1.9 1 1 0 1 1 1 0 Hpt domain Spc24 PF08286.6 gi|389847158|ref|YP_006349397.1| - 0.069 12.8 1.9 0.085 12.5 1.3 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.15 gi|389847158|ref|YP_006349397.1| - 0.084 12.6 1.5 0.2 11.4 1.0 1.6 1 1 0 1 1 1 0 Prefoldin subunit DUF3573 PF12097.3 gi|389847158|ref|YP_006349397.1| - 0.093 11.3 0.0 0.098 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) End3 PF12761.2 gi|389847158|ref|YP_006349397.1| - 0.19 11.3 1.6 0.22 11.1 1.1 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 PEP-utilisers_N PF05524.8 gi|389847158|ref|YP_006349397.1| - 0.21 11.3 2.1 1.3 8.8 1.5 2.0 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal GvpL_GvpF PF06386.6 gi|389847159|ref|YP_006349398.1| - 2.5e-88 295.8 1.8 3.8e-88 295.2 1.3 1.3 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF DUF1098 PF06497.6 gi|389847159|ref|YP_006349398.1| - 0.028 14.4 0.2 0.073 13.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) Gas_vesicle PF00741.13 gi|389847160|ref|YP_006349399.1| - 1.3e-13 50.5 6.4 1.5e-13 50.3 4.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF70 PF01901.11 gi|389847160|ref|YP_006349399.1| - 0.07 12.1 0.0 0.078 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 zf-C2H2 PF00096.21 gi|389847161|ref|YP_006349400.1| - 0.18 12.2 0.2 0.28 11.6 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|389847161|ref|YP_006349400.1| - 0.18 12.0 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding HTH_20 PF12840.2 gi|389847162|ref|YP_006349401.1| - 4.7e-14 51.9 0.1 7.9e-14 51.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|389847162|ref|YP_006349401.1| - 2.5e-07 30.2 0.0 4.4e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|389847162|ref|YP_006349401.1| - 3.5e-07 29.5 0.0 5.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|389847162|ref|YP_006349401.1| - 6.1e-07 29.0 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|389847162|ref|YP_006349401.1| - 0.0011 18.5 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389847162|ref|YP_006349401.1| - 0.057 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|389847162|ref|YP_006349401.1| - 0.071 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r4 PF04545.11 gi|389847162|ref|YP_006349401.1| - 0.072 12.4 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|389847162|ref|YP_006349401.1| - 0.079 12.5 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3082 PF11282.3 gi|389847162|ref|YP_006349401.1| - 0.27 11.3 1.8 0.36 10.9 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3082) META PF03724.11 gi|389847163|ref|YP_006349402.1| - 0.0018 18.0 1.2 0.21 11.4 0.0 2.6 2 1 0 2 2 2 2 META domain TAT_signal PF10518.4 gi|389847163|ref|YP_006349402.1| - 0.36 10.9 5.9 0.92 9.6 4.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HisG PF01634.13 gi|389847166|ref|YP_006349405.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase U-box PF04564.10 gi|389847166|ref|YP_006349405.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 U-box domain AAA_13 PF13166.1 gi|662859476|ref|YP_006349406.2| - 5.7e-09 35.0 11.4 5.2e-06 25.2 2.7 2.2 1 1 0 2 2 2 2 AAA domain Spc7 PF08317.6 gi|662859476|ref|YP_006349406.2| - 5.1e-08 31.9 16.1 0.00024 19.8 1.7 3.2 1 1 2 3 3 3 3 Spc7 kinetochore protein Laminin_I PF06008.9 gi|662859476|ref|YP_006349406.2| - 1.8e-07 30.7 20.8 0.00081 18.7 2.3 4.2 1 1 2 3 3 3 2 Laminin Domain I IncA PF04156.9 gi|662859476|ref|YP_006349406.2| - 4.3e-06 26.4 29.4 4.9e-05 23.0 4.7 3.7 1 1 1 2 2 2 1 IncA protein MscS_porin PF12795.2 gi|662859476|ref|YP_006349406.2| - 7e-06 25.5 15.6 0.0048 16.2 3.9 3.7 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain Tropomyosin PF00261.15 gi|662859476|ref|YP_006349406.2| - 1.1e-05 24.6 23.8 1.5e-05 24.2 15.3 2.2 1 1 0 1 1 1 1 Tropomyosin Tropomyosin_1 PF12718.2 gi|662859476|ref|YP_006349406.2| - 0.00022 21.0 26.1 0.00071 19.4 6.2 3.4 1 1 2 3 3 3 2 Tropomyosin like RmuC PF02646.11 gi|662859476|ref|YP_006349406.2| - 0.00026 19.9 3.1 0.99 8.1 0.1 3.8 1 1 2 4 4 4 1 RmuC family EzrA PF06160.7 gi|662859476|ref|YP_006349406.2| - 0.00028 19.2 15.3 0.00034 18.9 1.3 2.3 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA APG6 PF04111.7 gi|662859476|ref|YP_006349406.2| - 0.00034 19.7 12.5 0.018 14.0 1.5 2.3 1 1 0 2 2 2 2 Autophagy protein Apg6 TPR_MLP1_2 PF07926.7 gi|662859476|ref|YP_006349406.2| - 0.00039 20.1 12.6 0.017 14.8 1.1 4.2 1 1 3 4 4 4 1 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|662859476|ref|YP_006349406.2| - 0.0004 20.4 18.3 0.54 10.4 0.2 5.3 1 1 3 6 6 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.1 gi|662859476|ref|YP_006349406.2| - 0.00051 19.9 13.2 0.89 9.5 0.2 4.9 1 1 4 5 5 5 2 Domain of unknown function (DUF4200) Atg14 PF10186.4 gi|662859476|ref|YP_006349406.2| - 0.0006 18.8 8.4 0.081 11.8 1.5 2.7 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 COG2 PF06148.6 gi|662859476|ref|YP_006349406.2| - 0.00073 19.4 14.3 2.4 8.0 0.6 5.2 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Filament PF00038.16 gi|662859476|ref|YP_006349406.2| - 0.0012 18.3 23.2 0.012 15.0 14.1 3.3 1 1 1 2 2 2 1 Intermediate filament protein TMF_DNA_bd PF12329.3 gi|662859476|ref|YP_006349406.2| - 0.0017 18.1 17.0 0.092 12.5 0.3 6.0 3 3 2 5 5 5 1 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|662859476|ref|YP_006349406.2| - 0.0017 18.4 6.9 0.39 10.8 0.5 3.3 1 1 2 4 4 4 2 Fibrinogen alpha/beta chain family Flagellin_C PF00700.16 gi|662859476|ref|YP_006349406.2| - 0.0019 18.3 12.4 1.4 9.1 0.2 5.4 2 1 4 6 6 4 1 Bacterial flagellin C-terminal helical region Syntaxin PF00804.20 gi|662859476|ref|YP_006349406.2| - 0.0019 18.3 14.4 0.16 12.1 0.8 4.4 2 1 1 4 4 4 2 Syntaxin DUF1664 PF07889.7 gi|662859476|ref|YP_006349406.2| - 0.0024 17.6 18.5 0.037 13.8 0.8 5.1 1 1 4 5 5 5 1 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.17 gi|662859476|ref|YP_006349406.2| - 0.0035 17.3 12.2 0.31 11.0 0.1 5.3 1 1 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.4 gi|662859476|ref|YP_006349406.2| - 0.0036 17.1 3.6 0.0036 17.1 2.5 3.8 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF16 PF01519.11 gi|662859476|ref|YP_006349406.2| - 0.0078 16.4 7.4 1.3 9.2 0.2 3.8 2 1 1 3 3 3 1 Protein of unknown function DUF16 Bacillus_HBL PF05791.6 gi|662859476|ref|YP_006349406.2| - 0.0094 15.3 7.2 0.24 10.7 0.2 3.6 1 1 2 3 3 3 1 Bacillus haemolytic enterotoxin (HBL) Occludin_ELL PF07303.8 gi|662859476|ref|YP_006349406.2| - 0.012 16.3 5.2 2.5 8.8 0.1 4.3 1 1 3 4 4 4 0 Occludin homology domain DUF3552 PF12072.3 gi|662859476|ref|YP_006349406.2| - 0.02 14.1 22.1 0.16 11.1 2.9 4.1 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) FlaC_arch PF05377.6 gi|662859476|ref|YP_006349406.2| - 0.031 14.1 8.0 9.2 6.2 0.1 5.4 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) Reo_sigmaC PF04582.7 gi|662859476|ref|YP_006349406.2| - 0.033 13.3 27.8 0.0098 15.1 4.2 3.7 1 1 3 4 4 3 0 Reovirus sigma C capsid protein DUF2730 PF10805.3 gi|662859476|ref|YP_006349406.2| - 0.034 13.8 10.6 0.15 11.8 0.1 5.1 2 1 5 7 7 6 0 Protein of unknown function (DUF2730) TBPIP PF07106.8 gi|662859476|ref|YP_006349406.2| - 0.034 13.6 12.8 0.83 9.1 1.0 4.0 1 1 4 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2130 PF09903.4 gi|662859476|ref|YP_006349406.2| - 0.034 12.8 1.1 2.7 6.6 0.1 3.0 2 1 2 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2130) Prominin PF05478.6 gi|662859476|ref|YP_006349406.2| - 0.043 11.3 5.3 0.11 9.9 0.3 2.3 1 1 0 2 2 2 0 Prominin Laminin_II PF06009.7 gi|662859476|ref|YP_006349406.2| - 0.062 13.0 19.5 0.098 12.4 0.6 4.5 2 1 4 6 6 5 0 Laminin Domain II NPV_P10 PF05531.7 gi|662859476|ref|YP_006349406.2| - 0.09 13.0 27.5 0.43 10.8 1.5 6.9 2 1 2 5 5 4 0 Nucleopolyhedrovirus P10 protein Nsp1_C PF05064.8 gi|662859476|ref|YP_006349406.2| - 0.11 12.1 6.6 0.35 10.5 0.8 2.9 2 1 1 3 3 2 0 Nsp1-like C-terminal region Nup54 PF13874.1 gi|662859476|ref|YP_006349406.2| - 0.14 11.8 10.1 0.25 10.9 0.4 3.7 2 1 0 4 4 3 0 Nucleoporin complex subunit 54 Sec8_exocyst PF04048.9 gi|662859476|ref|YP_006349406.2| - 0.16 11.5 4.2 0.89 9.1 0.3 2.7 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain GAS PF13851.1 gi|662859476|ref|YP_006349406.2| - 0.17 11.0 7.4 2.9 7.0 1.7 2.7 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.4 gi|662859476|ref|YP_006349406.2| - 0.17 10.6 30.2 0.024 13.4 1.5 4.6 3 1 3 6 6 6 0 Intra-flagellar transport protein 57 Cast PF10174.4 gi|662859476|ref|YP_006349406.2| - 0.22 9.5 32.9 0.63 8.0 22.7 1.6 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Snapin_Pallidin PF14712.1 gi|662859476|ref|YP_006349406.2| - 0.24 11.7 5.6 95 3.4 0.1 4.7 1 1 1 4 4 4 0 Snapin/Pallidin Uds1 PF15456.1 gi|662859476|ref|YP_006349406.2| - 0.26 11.3 18.4 5.7 6.9 4.6 4.0 1 1 3 4 4 4 0 Up-regulated During Septation Sec2p PF06428.6 gi|662859476|ref|YP_006349406.2| - 0.31 10.8 11.0 3.9 7.3 1.2 4.0 3 1 2 5 5 3 0 GDP/GTP exchange factor Sec2p Syntaxin-6_N PF09177.6 gi|662859476|ref|YP_006349406.2| - 0.42 11.0 19.0 5.7 7.4 1.1 4.8 1 1 1 3 3 3 0 Syntaxin 6, N-terminal Cauli_AT PF03233.8 gi|662859476|ref|YP_006349406.2| - 0.43 10.2 1.9 10 5.7 0.1 3.0 2 1 1 3 3 3 0 Aphid transmission protein DUF4559 PF15112.1 gi|662859476|ref|YP_006349406.2| - 0.43 9.6 9.7 2.8 7.0 3.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) DASH_Dam1 PF08653.5 gi|662859476|ref|YP_006349406.2| - 0.46 10.2 7.3 41 4.0 0.0 5.4 4 1 3 7 7 6 0 DASH complex subunit Dam1 MtrB PF05440.7 gi|662859476|ref|YP_006349406.2| - 0.47 10.5 6.4 16 5.6 0.1 4.5 2 2 3 5 5 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF972 PF06156.8 gi|662859476|ref|YP_006349406.2| - 0.47 10.8 7.6 1.2 9.5 0.2 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|662859476|ref|YP_006349406.2| - 0.67 8.3 24.1 0.53 8.7 0.8 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF812) TMPIT PF07851.8 gi|662859476|ref|YP_006349406.2| - 0.79 8.7 2.0 11 4.9 0.1 2.6 1 1 2 3 3 3 0 TMPIT-like protein Mnd1 PF03962.10 gi|662859476|ref|YP_006349406.2| - 0.81 9.3 15.9 2.4 7.7 0.3 3.8 1 1 3 4 4 4 0 Mnd1 family AKNA PF12443.3 gi|662859476|ref|YP_006349406.2| - 0.82 9.7 3.5 1.9 8.5 0.9 2.8 2 1 1 3 3 1 0 AT-hook-containing transcription factor ADIP PF11559.3 gi|662859476|ref|YP_006349406.2| - 1.1 9.1 14.4 0.48 10.3 0.4 4.3 2 1 3 5 5 5 0 Afadin- and alpha -actinin-Binding AATF-Che1 PF13339.1 gi|662859476|ref|YP_006349406.2| - 1.6 8.9 12.8 2.9 8.0 0.1 3.5 1 1 2 3 3 2 0 Apoptosis antagonizing transcription factor V_ATPase_I PF01496.14 gi|662859476|ref|YP_006349406.2| - 2.3 5.9 13.5 85 0.7 0.0 3.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|662859476|ref|YP_006349406.2| - 2.5 6.6 5.6 13 4.3 0.5 3.3 1 1 2 3 3 3 0 FemAB family ATG16 PF08614.6 gi|662859476|ref|YP_006349406.2| - 2.8 7.7 28.0 5.6 6.7 3.2 4.1 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Cluap1 PF10234.4 gi|662859476|ref|YP_006349406.2| - 3.2 6.8 15.5 9.3 5.3 3.7 3.7 1 1 3 4 4 4 0 Clusterin-associated protein-1 TMF_TATA_bd PF12325.3 gi|662859476|ref|YP_006349406.2| - 3.5 7.3 29.0 2.1 8.1 1.4 5.4 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding Fzo_mitofusin PF04799.8 gi|662859476|ref|YP_006349406.2| - 3.5 6.9 8.6 8.6 5.7 0.1 4.1 1 1 3 5 5 4 0 fzo-like conserved region Osmo_CC PF08946.5 gi|662859476|ref|YP_006349406.2| - 3.6 7.6 7.8 0.79 9.7 0.1 3.8 3 1 1 4 4 2 0 Osmosensory transporter coiled coil Fez1 PF06818.10 gi|662859476|ref|YP_006349406.2| - 4.7 7.1 22.9 0.045 13.7 2.3 3.4 1 1 1 3 3 3 0 Fez1 DUF1515 PF07439.6 gi|662859476|ref|YP_006349406.2| - 7.2 6.4 11.8 0.1 12.4 0.4 3.2 2 2 3 5 5 4 0 Protein of unknown function (DUF1515) Lactamase_B_2 PF12706.2 gi|662859477|ref|YP_006349407.2| - 2.4e-16 59.8 1.1 3.1e-16 59.4 0.7 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|662859477|ref|YP_006349407.2| - 9.9e-12 44.8 0.2 1.4e-11 44.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|662859477|ref|YP_006349407.2| - 0.00013 21.6 12.2 0.0013 18.3 0.3 2.4 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lysine_decarbox PF03641.9 gi|389847169|ref|YP_006349408.1| - 1.2e-06 28.4 0.3 2.5e-06 27.3 0.2 1.5 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|389847169|ref|YP_006349408.1| - 1.6e-06 27.1 1.0 1.5e-05 24.0 0.3 2.0 2 0 0 2 2 2 1 DNA recombination-mediator protein A Flavodoxin_5 PF12724.2 gi|389847170|ref|YP_006349409.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Diphthamide_syn PF01866.12 gi|389847171|ref|YP_006349410.1| - 2e-93 312.9 0.0 2.4e-93 312.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF3529 PF12046.3 gi|389847171|ref|YP_006349410.1| - 0.034 13.1 0.0 0.056 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) Hydrolase_4 PF12146.3 gi|389847171|ref|YP_006349410.1| - 0.11 12.4 0.0 12 5.8 0.0 2.4 2 0 0 2 2 2 0 Putative lysophospholipase Zn-ribbon_8 PF09723.5 gi|389847172|ref|YP_006349411.1| - 0.00019 21.3 0.1 0.045 13.7 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|389847172|ref|YP_006349411.1| - 0.0086 16.3 0.2 0.019 15.2 0.1 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|389847172|ref|YP_006349411.1| - 0.014 14.5 2.2 0.14 11.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|389847172|ref|YP_006349411.1| - 0.032 13.7 1.4 0.37 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|389847172|ref|YP_006349411.1| - 0.033 14.0 0.1 7 6.5 0.0 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|389847172|ref|YP_006349411.1| - 0.035 13.8 0.2 4.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|389847172|ref|YP_006349411.1| - 0.039 13.7 0.2 0.1 12.4 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF2321 PF10083.4 gi|389847172|ref|YP_006349411.1| - 0.058 12.8 0.8 0.08 12.4 0.5 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) TF_Zn_Ribbon PF08271.7 gi|389847172|ref|YP_006349411.1| - 0.069 12.4 1.2 1.4 8.3 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|389847172|ref|YP_006349411.1| - 0.086 12.6 0.0 10 6.0 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|389847172|ref|YP_006349411.1| - 0.093 12.4 1.2 6.8 6.4 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal GFA PF04828.9 gi|389847172|ref|YP_006349411.1| - 0.12 12.3 0.3 3.3 7.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.5 gi|389847172|ref|YP_006349411.1| - 0.15 11.5 1.5 0.29 10.6 0.0 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-dskA_traR PF01258.12 gi|389847172|ref|YP_006349411.1| - 8.1 6.2 8.2 2.7 7.8 0.4 2.8 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Abhydrolase_2 PF02230.11 gi|662859478|ref|YP_006349412.2| - 2.5e-23 82.6 0.0 3e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|662859478|ref|YP_006349412.2| - 1.2e-13 51.0 0.1 1.5e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|662859478|ref|YP_006349412.2| - 1.7e-07 30.7 0.0 2.3e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|662859478|ref|YP_006349412.2| - 2.8e-06 27.3 5.0 0.00056 19.8 2.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|662859478|ref|YP_006349412.2| - 7e-06 25.4 0.0 0.03 13.5 0.0 2.7 2 1 1 3 3 3 2 Prolyl oligopeptidase family Esterase PF00756.15 gi|662859478|ref|YP_006349412.2| - 4.7e-05 22.9 0.0 6.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Putative esterase LIP PF03583.9 gi|662859478|ref|YP_006349412.2| - 0.00025 20.3 0.0 0.051 12.7 0.0 2.1 2 0 0 2 2 2 2 Secretory lipase FSH1 PF03959.8 gi|662859478|ref|YP_006349412.2| - 0.0046 16.4 0.0 0.011 15.1 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|662859478|ref|YP_006349412.2| - 0.047 13.2 0.0 6.7 6.2 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|662859478|ref|YP_006349412.2| - 0.055 12.7 0.1 0.31 10.2 0.0 2.2 1 1 1 2 2 2 0 Esterase PHB depolymerase DUF3530 PF12048.3 gi|662859478|ref|YP_006349412.2| - 0.15 11.0 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) DUF964 PF06133.6 gi|389847174|ref|YP_006349413.1| - 3.6e-22 78.4 4.5 4e-22 78.2 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) SH3BP5 PF05276.9 gi|389847174|ref|YP_006349413.1| - 0.0002 20.7 3.3 0.00034 20.0 2.3 1.4 1 1 0 1 1 1 1 SH3 domain-binding protein 5 (SH3BP5) Seryl_tRNA_N PF02403.17 gi|389847174|ref|YP_006349413.1| - 0.0089 16.0 3.6 0.013 15.4 2.5 1.4 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain BMFP PF04380.8 gi|389847174|ref|YP_006349413.1| - 0.022 14.9 2.4 0.06 13.5 1.7 1.8 1 1 0 1 1 1 0 Membrane fusogenic activity CENP-F_leu_zip PF10473.4 gi|389847174|ref|YP_006349413.1| - 0.089 12.6 7.2 0.14 12.0 5.0 1.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LUC7 PF03194.10 gi|389847174|ref|YP_006349413.1| - 0.11 12.0 2.8 0.13 11.8 1.9 1.1 1 0 0 1 1 1 0 LUC7 N_terminus COG2 PF06148.6 gi|389847174|ref|YP_006349413.1| - 0.12 12.2 2.1 0.19 11.6 1.4 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 RGCC PF15151.1 gi|389847174|ref|YP_006349413.1| - 0.18 12.2 1.7 0.46 10.9 0.4 2.0 1 1 1 2 2 2 0 Response gene to complement 32 protein family DUF416 PF04222.7 gi|389847174|ref|YP_006349413.1| - 0.21 10.6 2.2 0.28 10.2 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF416) DUF3073 PF11273.3 gi|389847174|ref|YP_006349413.1| - 0.38 11.3 2.6 2.8 8.5 1.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3073) APG6 PF04111.7 gi|389847174|ref|YP_006349413.1| - 3.6 6.5 6.2 4.3 6.3 4.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 CbiA PF01656.18 gi|389847175|ref|YP_006349414.1| - 1.2e-20 73.7 0.0 1.5e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|389847175|ref|YP_006349414.1| - 3.5e-05 23.0 0.0 4.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|389847175|ref|YP_006349414.1| - 7.3e-05 22.4 0.2 0.16 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain ParA PF10609.4 gi|389847175|ref|YP_006349414.1| - 0.00033 20.4 0.2 0.00071 19.4 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like Zeta_toxin PF06414.7 gi|389847175|ref|YP_006349414.1| - 0.0043 16.1 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_31 PF13614.1 gi|389847175|ref|YP_006349414.1| - 0.016 15.1 0.0 0.13 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|389847176|ref|YP_006349415.1| - 1e-06 28.0 0.0 0.02 14.0 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.6 gi|389847176|ref|YP_006349415.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein EmrE PF13536.1 gi|389847177|ref|YP_006349416.1| - 0.061 13.5 3.3 0.076 13.2 2.3 1.2 1 0 0 1 1 1 0 Multidrug resistance efflux transporter VIT1 PF01988.14 gi|389847177|ref|YP_006349416.1| - 1.3 8.4 5.2 0.45 9.9 1.8 1.5 1 1 0 1 1 1 0 VIT family FKBP_C PF00254.23 gi|662859479|ref|YP_006349417.2| - 1.4e-10 41.0 0.5 3e-10 39.9 0.1 1.8 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|662859479|ref|YP_006349417.2| - 0.62 9.4 2.6 0.48 9.8 0.3 2.0 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) CoA_binding_3 PF13727.1 gi|389847179|ref|YP_006349418.1| - 0.25 11.1 2.2 1.4 8.7 0.2 2.3 2 0 0 2 2 2 0 CoA-binding domain OppC_N PF12911.2 gi|389847179|ref|YP_006349418.1| - 1.2 8.6 0.1 1.2 8.6 0.0 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF4131 PF13567.1 gi|389847179|ref|YP_006349418.1| - 3.1 7.1 10.3 0.095 12.0 1.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF1772 PF08592.6 gi|389847179|ref|YP_006349418.1| - 3.6 7.2 12.0 1.1 9.0 2.9 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) MAPEG PF01124.13 gi|389847179|ref|YP_006349418.1| - 6.2 6.4 13.5 1.6e+02 1.8 9.4 2.3 1 1 0 1 1 1 0 MAPEG family DUF2523 PF10734.4 gi|389847181|ref|YP_006349420.1| - 0.0066 16.6 7.4 0.11 12.7 1.9 3.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2523) zf-Di19 PF05605.7 gi|389847182|ref|YP_006349421.1| - 9.7e-05 22.4 0.5 0.00018 21.5 0.4 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|389847182|ref|YP_006349421.1| - 0.018 15.3 1.9 0.04 14.2 0.7 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger zf-CHCC PF10276.4 gi|389847182|ref|YP_006349421.1| - 0.068 13.0 0.2 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger domain zf-RING_3 PF14369.1 gi|389847182|ref|YP_006349421.1| - 0.078 12.9 0.4 0.18 11.8 0.3 1.6 1 0 0 1 1 1 0 zinc-finger DHQ_synthase PF01761.15 gi|389847183|ref|YP_006349422.1| - 0.44 9.4 3.0 0.55 9.1 2.1 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase IncA PF04156.9 gi|389847183|ref|YP_006349422.1| - 5.3 6.5 6.0 6.4 6.3 4.1 1.2 1 0 0 1 1 1 0 IncA protein Herpes_UL43 PF05072.8 gi|662859480|ref|YP_006349423.2| - 0.02 13.6 0.5 0.022 13.4 0.4 1.0 1 0 0 1 1 1 0 Herpesvirus UL43 protein DUF485 PF04341.7 gi|662859480|ref|YP_006349423.2| - 0.82 9.4 3.2 1.2 8.8 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 DUF4229 PF14012.1 gi|662859480|ref|YP_006349423.2| - 7.7 6.4 11.8 0.56 10.1 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) COX4_pro PF03626.9 gi|389847185|ref|YP_006349424.1| - 1.1e-10 41.4 8.3 1.2e-10 41.2 5.8 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV HlyIII PF03006.15 gi|389847185|ref|YP_006349424.1| - 0.36 10.1 6.4 0.46 9.8 4.5 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF983 PF06170.7 gi|389847185|ref|YP_006349424.1| - 3.1 7.9 5.7 2.3 8.3 2.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF1469 PF07332.6 gi|389847185|ref|YP_006349424.1| - 5.5 6.7 15.1 0.15 11.7 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) COX1 PF00115.15 gi|389847186|ref|YP_006349425.1| - 1.9e-144 481.6 67.1 1.9e-144 481.6 46.5 2.6 2 1 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|389847186|ref|YP_006349425.1| - 3.8e-20 72.4 10.8 3.8e-20 72.4 7.5 3.7 4 0 0 4 4 4 2 Cytochrome c oxidase subunit III DUF2583 PF10762.4 gi|389847186|ref|YP_006349425.1| - 2.6 8.2 8.2 0.99 9.5 2.2 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2583) COX2 PF00116.15 gi|389847187|ref|YP_006349426.1| - 5e-21 74.7 0.0 2e-20 72.7 0.0 2.0 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|389847187|ref|YP_006349426.1| - 1.4e-05 24.9 0.0 2.9e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 Cupredoxin-like domain Oxidored_q1_N PF00662.15 gi|389847187|ref|YP_006349426.1| - 6 6.5 9.9 3.5 7.2 0.2 2.4 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OrfB_Zn_ribbon PF07282.6 gi|389847189|ref|YP_006349428.1| - 9.6e-21 73.2 0.6 1.7e-20 72.3 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|389847189|ref|YP_006349428.1| - 0.00033 20.1 0.3 0.0007 19.0 0.2 1.5 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.2 gi|389847189|ref|YP_006349428.1| - 0.00074 19.2 5.4 0.0014 18.3 3.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain XisH PF08814.5 gi|389847189|ref|YP_006349428.1| - 0.14 12.1 0.1 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 XisH protein UPF0547 PF10571.4 gi|389847189|ref|YP_006349428.1| - 0.94 9.2 5.5 1.1 8.9 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2080 PF09853.4 gi|389847190|ref|YP_006349429.1| - 0.00054 19.6 0.0 0.00071 19.2 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) ATPase_gene1 PF09527.5 gi|389847191|ref|YP_006349430.1| - 7.7 6.3 20.3 0.41 10.4 0.3 3.7 3 1 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) CYTH PF01928.16 gi|389847192|ref|YP_006349431.1| - 1e-39 136.1 5.1 1.2e-39 135.9 3.5 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|389847193|ref|YP_006349432.1| - 2.4e-178 592.6 7.0 2.8e-178 592.4 4.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Asp23 PF03780.8 gi|389847193|ref|YP_006349432.1| - 0.19 11.9 6.9 1.4 9.1 1.0 3.5 3 1 0 3 3 3 0 Asp23 family PP_kinase_C PF13090.1 gi|389847194|ref|YP_006349433.1| - 3.2e-152 506.1 0.0 4.2e-152 505.8 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|389847194|ref|YP_006349433.1| - 9.4e-64 214.7 3.3 1.4e-63 214.1 2.3 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|389847194|ref|YP_006349433.1| - 7e-40 135.5 0.9 1.6e-39 134.3 0.0 2.1 3 0 0 3 3 3 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|389847194|ref|YP_006349433.1| - 1.8e-09 37.3 0.0 0.0013 18.4 0.1 2.4 2 0 0 2 2 2 2 PLD-like domain ThiI PF02568.9 gi|389847195|ref|YP_006349434.1| - 8.3e-45 152.6 0.0 1.2e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|389847195|ref|YP_006349434.1| - 8.5e-18 64.6 0.0 1.5e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|389847195|ref|YP_006349434.1| - 2.7e-05 23.5 0.0 0.023 13.9 0.0 2.9 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|389847195|ref|YP_006349434.1| - 0.024 13.2 0.0 0.033 12.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase zf-FCS PF06467.9 gi|389847196|ref|YP_006349435.1| - 0.0096 15.5 0.4 0.028 14.0 0.3 1.7 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|389847196|ref|YP_006349435.1| - 0.023 14.5 0.0 0.049 13.5 0.0 1.7 1 1 0 1 1 1 0 MYND finger PALP PF00291.20 gi|389847199|ref|YP_006349438.1| - 3.1e-60 203.9 0.1 4.1e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thioredoxin PF00085.15 gi|389847200|ref|YP_006349439.1| - 2.3e-05 24.0 0.0 3.8e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389847200|ref|YP_006349439.1| - 0.00014 22.0 0.1 0.0011 19.1 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|389847200|ref|YP_006349439.1| - 0.0024 17.4 0.0 0.0066 16.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|389847200|ref|YP_006349439.1| - 0.0042 16.8 0.0 0.0078 16.0 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|389847200|ref|YP_006349439.1| - 0.036 13.7 0.0 0.047 13.3 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.5 gi|389847200|ref|YP_006349439.1| - 0.049 13.1 0.1 0.41 10.1 0.0 2.0 1 1 0 1 1 1 0 Redoxin Thioredox_DsbH PF03190.10 gi|389847202|ref|YP_006349441.1| - 2.1e-75 251.9 0.0 3.3e-75 251.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|389847202|ref|YP_006349441.1| - 2.7e-14 52.9 0.0 6.8e-14 51.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.8 gi|389847202|ref|YP_006349441.1| - 0.0024 16.9 0.0 0.011 14.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|389847202|ref|YP_006349441.1| - 0.0025 18.0 0.0 0.006 16.7 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|389847202|ref|YP_006349441.1| - 0.0065 15.7 0.0 0.047 12.9 0.0 2.2 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|389847202|ref|YP_006349441.1| - 0.024 14.0 0.0 0.41 9.9 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 Fe_dep_repr_C PF02742.10 gi|389847202|ref|YP_006349441.1| - 0.06 13.0 0.3 0.35 10.6 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain YjbR PF04237.8 gi|389847202|ref|YP_006349441.1| - 0.066 13.5 0.1 4.1 7.8 0.0 2.8 2 0 0 2 2 2 0 YjbR Prenyltrans_1 PF13243.1 gi|389847202|ref|YP_006349441.1| - 0.12 12.3 0.1 1.3 9.0 0.0 2.6 3 0 0 3 3 3 0 Prenyltransferase-like HTH_10 PF04967.7 gi|389847202|ref|YP_006349441.1| - 0.12 11.9 0.2 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain DUF1680 PF07944.7 gi|389847202|ref|YP_006349441.1| - 0.16 10.1 0.4 7.5 4.6 0.1 2.7 2 1 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) DUF3650 PF12368.3 gi|389847202|ref|YP_006349441.1| - 0.23 10.9 1.8 0.68 9.4 1.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) PqqD PF05402.7 gi|389847202|ref|YP_006349441.1| - 0.31 11.0 2.4 3.9 7.5 0.4 3.4 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) GARS_A PF01071.14 gi|389847203|ref|YP_006349442.1| - 3.1e-51 173.7 0.0 5e-51 173.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|389847203|ref|YP_006349442.1| - 3.5e-23 81.9 0.1 6.7e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|389847203|ref|YP_006349442.1| - 8.7e-22 77.1 0.2 4.5e-21 74.8 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|389847203|ref|YP_006349442.1| - 6.2e-19 68.4 0.1 1.6e-18 67.0 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|389847203|ref|YP_006349442.1| - 4.6e-08 32.1 0.0 5.8e-07 28.5 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|389847203|ref|YP_006349442.1| - 7.5e-05 22.6 0.0 0.00018 21.4 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Hexapep PF00132.19 gi|389847204|ref|YP_006349443.1| - 1.2e-09 37.2 5.6 3e-08 32.7 0.1 2.9 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389847204|ref|YP_006349443.1| - 2.1e-09 36.7 1.6 2.8e-07 29.9 0.1 3.0 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase HATPase_c PF02518.21 gi|389847205|ref|YP_006349444.1| - 2.9e-17 62.3 0.0 5.1e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|389847205|ref|YP_006349444.1| - 2.2e-12 47.2 0.3 1.6e-11 44.4 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|389847205|ref|YP_006349444.1| - 2.9e-06 27.2 0.0 6.7e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|389847205|ref|YP_006349444.1| - 1.2e-05 25.0 0.5 8.9e-05 22.2 0.0 2.5 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|389847205|ref|YP_006349444.1| - 1.3e-05 24.8 0.1 3.5e-05 23.4 0.1 1.8 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|389847205|ref|YP_006349444.1| - 0.00031 20.2 0.4 0.00077 18.9 0.3 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|389847205|ref|YP_006349444.1| - 0.00037 20.2 0.1 0.00084 19.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF2226 PF09987.4 gi|389847205|ref|YP_006349444.1| - 0.0019 17.3 2.1 0.0033 16.6 1.5 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) PAS_3 PF08447.6 gi|389847205|ref|YP_006349444.1| - 0.0037 17.3 0.6 0.07 13.2 0.0 2.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|389847205|ref|YP_006349444.1| - 0.0087 16.0 1.1 0.019 14.9 0.8 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MS_channel PF00924.13 gi|389847207|ref|YP_006349446.1| - 1.5e-14 53.7 1.8 1.5e-14 53.7 1.2 2.1 3 1 0 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|389847207|ref|YP_006349446.1| - 1.5e-07 30.9 16.1 0.00083 18.9 0.6 3.4 3 0 0 3 3 3 2 Conserved TM helix Myco_arth_vir_N PF09610.5 gi|389847207|ref|YP_006349446.1| - 0.061 13.2 1.7 0.061 13.2 1.2 3.0 3 0 0 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) Peptidase_M50 PF02163.17 gi|389847207|ref|YP_006349446.1| - 3.8 6.4 6.3 1.2 8.0 1.9 1.8 1 1 1 2 2 2 0 Peptidase family M50 DUF443 PF04276.7 gi|389847207|ref|YP_006349446.1| - 9.1 5.6 10.5 0.47 9.8 3.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF443) DisA_N PF02457.11 gi|389847208|ref|YP_006349447.1| - 2.4e-25 88.0 0.0 3.5e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Bac_globin PF01152.16 gi|389847209|ref|YP_006349448.1| - 1.9e-30 105.3 0.0 2.1e-30 105.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|389847209|ref|YP_006349448.1| - 0.00013 21.7 0.4 0.00077 19.1 0.1 1.9 1 1 1 2 2 2 1 Protoglobin TFIIB PF00382.14 gi|389847211|ref|YP_006349450.1| - 1.1e-05 25.1 0.3 1.7e-05 24.5 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.1 gi|389847211|ref|YP_006349450.1| - 0.0033 17.4 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|389847211|ref|YP_006349450.1| - 0.029 13.6 0.2 0.054 12.8 0.1 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 CTP_transf_2 PF01467.21 gi|389847212|ref|YP_006349451.1| - 5.8e-13 49.1 0.1 8.3e-11 42.1 0.0 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|389847212|ref|YP_006349451.1| - 0.0016 18.0 0.4 0.053 13.1 0.1 2.2 1 1 0 2 2 2 1 FAD synthetase zf-IS66 PF13005.2 gi|389847212|ref|YP_006349451.1| - 0.47 10.4 1.7 5.3 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TrmB PF01978.14 gi|389847213|ref|YP_006349452.1| - 8e-07 28.6 0.2 1.2e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389847213|ref|YP_006349452.1| - 6.5e-05 22.2 0.0 9.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|389847213|ref|YP_006349452.1| - 0.00015 21.1 0.1 0.00033 20.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|389847213|ref|YP_006349452.1| - 0.00028 20.6 0.3 0.00065 19.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|389847213|ref|YP_006349452.1| - 0.00048 19.6 0.0 0.0006 19.2 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|389847213|ref|YP_006349452.1| - 0.0032 17.0 0.1 0.0049 16.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847213|ref|YP_006349452.1| - 0.0041 16.7 0.1 0.0082 15.7 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|389847213|ref|YP_006349452.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|389847213|ref|YP_006349452.1| - 0.022 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF3369 PF11849.3 gi|389847213|ref|YP_006349452.1| - 0.044 13.7 0.0 0.096 12.6 0.0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3369) HTH_27 PF13463.1 gi|389847213|ref|YP_006349452.1| - 0.049 13.9 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_42 PF06224.7 gi|389847213|ref|YP_006349452.1| - 0.056 12.7 0.1 0.063 12.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|389847213|ref|YP_006349452.1| - 0.098 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GCS2 PF04107.8 gi|389847214|ref|YP_006349453.1| - 2.1e-73 246.9 0.1 2.5e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|389847214|ref|YP_006349453.1| - 0.0086 15.7 1.1 0.21 11.1 0.3 2.7 2 1 0 2 2 2 1 Putative amidoligase enzyme Fibrillarin PF01269.12 gi|389847215|ref|YP_006349454.1| - 9.8e-52 175.1 0.0 1.2e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|389847216|ref|YP_006349455.1| - 2.4e-40 137.2 0.2 4.5e-40 136.3 0.0 1.5 2 0 0 2 2 2 1 Putative snoRNA binding domain Flg_hook PF02120.11 gi|389847217|ref|YP_006349456.1| - 0.029 14.0 0.0 0.063 12.9 0.0 1.5 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK DUF3816 PF12822.2 gi|389847218|ref|YP_006349457.1| - 0.029 14.2 0.1 0.038 13.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) DUF1381 PF07129.6 gi|389847219|ref|YP_006349458.1| - 0.26 10.7 1.6 0.77 9.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1381) CorA PF01544.13 gi|389847220|ref|YP_006349459.1| - 3.2e-69 233.1 0.1 3.8e-69 232.9 0.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TFIIB PF00382.14 gi|389847221|ref|YP_006349460.1| - 1.5e-40 136.8 0.2 3.7e-19 68.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|389847221|ref|YP_006349460.1| - 4e-16 58.0 2.7 7.8e-16 57.1 1.9 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|389847221|ref|YP_006349460.1| - 0.0024 17.7 0.0 0.89 9.5 0.0 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|389847221|ref|YP_006349460.1| - 0.003 16.7 1.1 0.0052 15.9 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|389847221|ref|YP_006349460.1| - 0.0039 16.5 2.4 0.0079 15.6 1.7 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain DZR PF12773.2 gi|389847221|ref|YP_006349460.1| - 0.015 15.1 1.5 0.03 14.1 1.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|389847221|ref|YP_006349460.1| - 0.024 14.2 1.0 0.05 13.2 0.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|389847221|ref|YP_006349460.1| - 0.047 13.1 3.7 0.083 12.4 2.6 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|389847221|ref|YP_006349460.1| - 0.05 12.9 5.5 0.063 12.5 0.0 3.4 4 0 0 4 4 4 0 Sigma-70, region 4 Cyclin_N PF00134.18 gi|389847221|ref|YP_006349460.1| - 0.054 13.0 0.1 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain HTH_24 PF13412.1 gi|389847221|ref|YP_006349460.1| - 0.071 12.5 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-C4_Topoisom PF01396.14 gi|389847221|ref|YP_006349460.1| - 0.099 12.1 0.2 0.099 12.1 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.6 gi|389847221|ref|YP_006349460.1| - 0.1 12.4 1.0 0.19 11.5 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Autoind_bind PF03472.10 gi|389847221|ref|YP_006349460.1| - 0.13 11.5 0.1 0.38 10.0 0.0 1.8 2 0 0 2 2 2 0 Autoinducer binding domain Auto_anti-p27 PF06677.7 gi|389847221|ref|YP_006349460.1| - 0.16 11.7 1.8 0.3 10.8 1.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|389847221|ref|YP_006349460.1| - 0.26 11.0 2.9 0.45 10.2 2.0 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|389847221|ref|YP_006349460.1| - 0.32 10.9 5.6 0.55 10.2 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|389847221|ref|YP_006349460.1| - 0.74 9.5 3.4 3.3 7.4 2.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal FdhE PF04216.7 gi|389847221|ref|YP_006349460.1| - 2 8.0 5.4 7.8 6.1 0.5 2.3 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-RING_3 PF14369.1 gi|389847221|ref|YP_006349460.1| - 3.1 7.8 5.2 0.78 9.7 0.9 2.0 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|389847221|ref|YP_006349460.1| - 7.3 6.2 6.0 8.3 6.0 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF2752 PF10825.3 gi|389847222|ref|YP_006349461.1| - 0.0093 15.9 0.6 0.13 12.2 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2752) zinc_ribbon_2 PF13240.1 gi|389847222|ref|YP_006349461.1| - 0.032 13.7 0.9 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|389847222|ref|YP_006349461.1| - 0.036 13.7 0.8 0.052 13.2 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|389847222|ref|YP_006349461.1| - 0.038 13.8 1.8 0.066 13.0 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|389847222|ref|YP_006349461.1| - 0.039 13.6 0.2 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|389847222|ref|YP_006349461.1| - 0.047 13.5 2.1 0.18 11.6 1.8 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_5 PF13719.1 gi|389847222|ref|YP_006349461.1| - 0.048 13.2 0.2 0.076 12.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|389847222|ref|YP_006349461.1| - 0.049 13.5 0.7 5 7.1 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain NMD3 PF04981.8 gi|389847222|ref|YP_006349461.1| - 0.064 12.3 0.1 0.066 12.3 0.1 1.1 1 0 0 1 1 1 0 NMD3 family HypA PF01155.14 gi|389847222|ref|YP_006349461.1| - 0.066 12.9 0.2 0.07 12.8 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|389847222|ref|YP_006349461.1| - 0.079 12.7 1.4 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|389847222|ref|YP_006349461.1| - 0.084 12.2 3.4 0.26 10.6 2.2 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|389847222|ref|YP_006349461.1| - 0.086 12.6 1.9 0.18 11.5 1.1 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Stc1 PF12898.2 gi|389847222|ref|YP_006349461.1| - 0.11 12.6 0.4 0.13 12.3 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain UPF0547 PF10571.4 gi|389847222|ref|YP_006349461.1| - 0.16 11.6 0.1 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ADK_lid PF05191.9 gi|389847222|ref|YP_006349461.1| - 0.26 10.9 1.7 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid eIF-5_eIF-2B PF01873.12 gi|389847223|ref|YP_006349462.1| - 2e-32 111.4 0.0 2.3e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 RecR PF02132.10 gi|389847223|ref|YP_006349462.1| - 0.0024 17.2 0.2 0.066 12.6 0.0 2.4 1 1 1 2 2 2 1 RecR protein OrfB_Zn_ribbon PF07282.6 gi|389847223|ref|YP_006349462.1| - 0.038 13.6 0.1 0.066 12.8 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|389847223|ref|YP_006349462.1| - 0.095 12.5 0.2 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|389847223|ref|YP_006349462.1| - 0.2 11.6 1.3 0.64 10.0 1.0 1.7 1 1 1 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|389847223|ref|YP_006349462.1| - 0.28 10.9 3.4 9.9 5.9 2.7 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF678 PF05077.7 gi|389847223|ref|YP_006349462.1| - 0.32 11.0 1.4 6.7 6.7 1.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF678) Lar_restr_allev PF14354.1 gi|389847223|ref|YP_006349462.1| - 0.36 11.1 1.6 2.7 8.3 1.1 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|389847223|ref|YP_006349462.1| - 0.62 9.3 2.7 9.4 5.5 2.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|389847223|ref|YP_006349462.1| - 0.69 9.4 2.5 2.9 7.4 1.8 1.8 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0058 PF01893.11 gi|389847224|ref|YP_006349463.1| - 1.2e-21 76.5 0.1 1.3e-21 76.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|389847225|ref|YP_006349464.1| - 1.4e-36 124.5 0.3 1.7e-36 124.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) OGG_N PF07934.7 gi|389847226|ref|YP_006349465.1| - 3.4e-16 59.2 0.0 6.2e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|389847226|ref|YP_006349465.1| - 3.1e-13 49.9 0.0 4.4e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Glyco_hydro_77 PF02446.12 gi|662859481|ref|YP_006349466.2| - 1.7e-134 449.1 0.0 1.9e-134 448.9 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2b PF00587.20 gi|389847228|ref|YP_006349467.1| - 2.3e-40 138.0 0.1 6.4e-40 136.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|389847228|ref|YP_006349467.1| - 1e-18 67.0 0.3 2.2e-18 65.9 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.16 gi|389847228|ref|YP_006349467.1| - 2.5e-13 49.6 0.1 1.1e-12 47.5 0.1 2.1 2 0 0 2 2 2 1 TGS domain tRNA_SAD PF07973.9 gi|389847228|ref|YP_006349467.1| - 2.9e-13 49.4 0.0 6e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Abhydrolase_5 PF12695.2 gi|389847229|ref|YP_006349468.1| - 3.9e-09 36.4 0.0 6.8e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|389847229|ref|YP_006349468.1| - 1.6e-08 34.7 4.9 1.6e-08 34.7 3.4 2.9 2 1 0 2 2 2 1 Alpha/beta hydrolase family DUF2048 PF09752.4 gi|389847229|ref|YP_006349468.1| - 2.5e-06 26.6 0.0 4.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) Peptidase_S15 PF02129.13 gi|389847229|ref|YP_006349468.1| - 0.053 12.9 0.2 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF2267 PF10025.4 gi|389847230|ref|YP_006349469.1| - 9.6e-34 116.1 0.3 1.1e-33 115.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) UvsW PF11637.3 gi|389847232|ref|YP_006349471.1| - 0.076 12.6 1.2 0.18 11.4 0.4 1.7 1 1 1 2 2 2 0 ATP-dependant DNA helicase UvsW Acetyltransf_3 PF13302.1 gi|389847233|ref|YP_006349472.1| - 2.2e-23 82.9 0.0 2.7e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389847233|ref|YP_006349472.1| - 5.9e-12 45.7 0.0 7.5e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847233|ref|YP_006349472.1| - 7.9e-10 38.6 0.0 1.3e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|389847233|ref|YP_006349472.1| - 4.6e-05 23.3 0.0 6.8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TrkA_N PF02254.13 gi|662859482|ref|YP_006349473.2| - 2.5e-19 69.3 3.0 3e-19 69.1 1.1 1.9 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|662859482|ref|YP_006349473.2| - 3.7e-14 52.5 0.1 9.7e-14 51.2 0.0 1.7 1 0 0 1 1 1 1 DHH family F420_oxidored PF03807.12 gi|662859482|ref|YP_006349473.2| - 1.6e-07 31.6 0.3 7.6e-07 29.4 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|662859482|ref|YP_006349473.2| - 3.9e-07 29.6 0.0 2.8e-05 23.6 0.0 2.4 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|662859482|ref|YP_006349473.2| - 9e-07 28.2 0.6 1.6e-06 27.3 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|662859482|ref|YP_006349473.2| - 3.6e-06 26.8 0.0 7e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|662859482|ref|YP_006349473.2| - 6.5e-06 25.6 0.2 1.4e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|662859482|ref|YP_006349473.2| - 7.6e-06 26.0 3.8 9.2e-06 25.7 1.4 2.0 2 1 0 2 2 2 1 NADH(P)-binding DHHA1 PF02272.14 gi|662859482|ref|YP_006349473.2| - 1.8e-05 24.3 0.2 6e-05 22.6 0.1 2.0 1 1 1 2 2 2 1 DHHA1 domain NAD_binding_2 PF03446.10 gi|662859482|ref|YP_006349473.2| - 5.1e-05 23.1 0.0 9.8e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|662859482|ref|YP_006349473.2| - 0.00032 20.8 0.9 0.0009 19.4 0.5 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|662859482|ref|YP_006349473.2| - 0.00049 19.5 0.0 0.0012 18.2 0.0 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|662859482|ref|YP_006349473.2| - 0.0013 18.8 0.0 0.0028 17.7 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|662859482|ref|YP_006349473.2| - 0.0032 17.1 0.1 0.0068 16.0 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|662859482|ref|YP_006349473.2| - 0.0082 15.3 0.0 0.02 14.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|662859482|ref|YP_006349473.2| - 0.016 14.0 0.6 0.025 13.3 0.4 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_8 PF13450.1 gi|662859482|ref|YP_006349473.2| - 0.018 15.0 0.0 0.051 13.6 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|662859482|ref|YP_006349473.2| - 0.021 14.6 0.9 0.07 12.9 0.6 2.1 1 1 0 1 1 1 0 ThiF family DAO PF01266.19 gi|662859482|ref|YP_006349473.2| - 0.027 13.4 0.1 0.087 11.7 0.0 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase XdhC_C PF13478.1 gi|662859482|ref|YP_006349473.2| - 0.027 14.7 0.4 0.12 12.6 0.1 2.1 1 1 1 2 2 2 0 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|662859482|ref|YP_006349473.2| - 0.036 13.1 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain ADH_zinc_N PF00107.21 gi|662859482|ref|YP_006349473.2| - 0.061 12.8 0.3 0.24 10.9 0.0 2.1 3 0 0 3 3 2 0 Zinc-binding dehydrogenase adh_short PF00106.20 gi|662859482|ref|YP_006349473.2| - 0.32 10.9 6.9 0.16 11.9 1.2 2.8 2 1 1 3 3 3 0 short chain dehydrogenase PRC PF05239.11 gi|389847235|ref|YP_006349474.1| - 1.2e-13 50.7 0.7 1.5e-13 50.3 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF162 PF02589.10 gi|389847236|ref|YP_006349475.1| - 1.4e-41 142.1 0.2 2.2e-41 141.4 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|389847236|ref|YP_006349475.1| - 5.1e-09 36.0 4.5 1.1e-08 34.9 3.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389847236|ref|YP_006349475.1| - 2.4e-08 34.2 4.9 2e-05 24.9 0.3 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389847236|ref|YP_006349475.1| - 2e-07 30.7 3.4 0.0011 18.6 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|389847236|ref|YP_006349475.1| - 1.6e-06 28.3 2.8 3.6e-06 27.2 1.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389847236|ref|YP_006349475.1| - 7.1e-06 26.3 6.6 1.9e-05 24.9 4.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389847236|ref|YP_006349475.1| - 5.6e-05 22.8 12.8 0.00062 19.5 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|389847236|ref|YP_006349475.1| - 0.00012 21.7 12.4 0.0042 16.9 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389847236|ref|YP_006349475.1| - 0.00015 21.9 10.1 0.0024 18.1 7.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389847236|ref|YP_006349475.1| - 0.00018 20.9 13.4 0.0011 18.5 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|389847236|ref|YP_006349475.1| - 0.00068 19.4 10.5 0.006 16.4 7.3 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|389847236|ref|YP_006349475.1| - 0.01 16.0 14.8 0.045 14.0 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|389847236|ref|YP_006349475.1| - 0.038 13.6 2.0 0.074 12.6 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DNA_photolyase PF00875.13 gi|389847236|ref|YP_006349475.1| - 0.043 13.5 0.1 0.087 12.5 0.1 1.4 1 0 0 1 1 1 0 DNA photolyase Abhydrolase_6 PF12697.2 gi|389847236|ref|YP_006349475.1| - 0.045 13.6 0.5 0.045 13.6 0.3 2.1 3 0 0 3 3 3 0 Alpha/beta hydrolase family Fer4_3 PF12798.2 gi|389847236|ref|YP_006349475.1| - 0.09 13.3 17.6 0.25 11.9 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|389847236|ref|YP_006349475.1| - 0.48 11.2 9.9 2.1 9.1 6.9 2.1 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Response_reg PF00072.19 gi|389847236|ref|YP_006349475.1| - 1.1 9.3 5.2 26 4.8 0.0 3.5 4 0 0 4 4 3 0 Response regulator receiver domain DUF162 PF02589.10 gi|389847237|ref|YP_006349476.1| - 5.4e-22 78.2 0.1 6.5e-22 77.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 AIRS_C PF02769.17 gi|389847237|ref|YP_006349476.1| - 0.096 12.6 0.0 0.38 10.7 0.0 1.8 1 1 2 3 3 3 0 AIR synthase related protein, C-terminal domain HTH_20 PF12840.2 gi|389847239|ref|YP_006349478.1| - 2.1e-05 24.2 0.2 3.7e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389847239|ref|YP_006349478.1| - 4.9e-05 22.8 0.0 8.4e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|389847239|ref|YP_006349478.1| - 0.0072 15.8 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389847239|ref|YP_006349478.1| - 0.0075 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389847239|ref|YP_006349478.1| - 0.024 14.2 0.3 0.054 13.1 0.2 1.6 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.7 gi|389847239|ref|YP_006349478.1| - 0.03 13.8 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|389847239|ref|YP_006349478.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|389847239|ref|YP_006349478.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Lactate_perm PF02652.9 gi|389847240|ref|YP_006349479.1| - 2.7e-102 342.9 40.5 4.8e-102 342.1 28.1 1.4 1 1 0 1 1 1 1 L-lactate permease FAD-oxidase_C PF02913.14 gi|389847241|ref|YP_006349480.1| - 1e-62 211.6 2.7 2.7e-62 210.3 1.6 2.0 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|389847241|ref|YP_006349480.1| - 5.4e-42 142.5 0.1 1.3e-41 141.3 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|389847241|ref|YP_006349480.1| - 7.6e-08 32.5 2.6 1.6e-07 31.5 1.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|389847241|ref|YP_006349480.1| - 1.3e-07 31.4 4.7 2.6e-07 30.5 3.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|389847241|ref|YP_006349480.1| - 3.1e-06 27.0 0.0 8.4e-05 22.4 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|389847241|ref|YP_006349480.1| - 2.6e-05 24.5 1.4 0.00016 22.0 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|389847241|ref|YP_006349480.1| - 0.002 18.3 1.7 0.079 13.2 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389847241|ref|YP_006349480.1| - 0.0031 17.2 3.3 0.042 13.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|389847241|ref|YP_006349480.1| - 0.0082 15.9 3.8 0.04 13.7 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|389847241|ref|YP_006349480.1| - 0.033 13.3 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_7 PF12838.2 gi|389847241|ref|YP_006349480.1| - 1.7 9.1 8.6 4.7 7.6 1.7 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389847241|ref|YP_006349480.1| - 2.9 7.6 14.5 0.69 9.6 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|389847241|ref|YP_006349480.1| - 3.8 7.6 9.3 0.69 9.9 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Aminotran_1_2 PF00155.16 gi|389847242|ref|YP_006349481.1| - 2.8e-27 95.6 0.0 8.1e-27 94.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II DUF123 PF01986.11 gi|389847243|ref|YP_006349482.1| - 1.1e-25 89.6 0.0 1.5e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF393 PF04134.7 gi|389847244|ref|YP_006349483.1| - 2.6e-07 31.7 0.0 3.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DEAD PF00270.24 gi|389847245|ref|YP_006349484.1| - 1.5e-22 79.9 0.0 2.1e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|389847245|ref|YP_006349484.1| - 9.1e-18 64.6 0.1 2.7e-17 63.0 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|389847245|ref|YP_006349484.1| - 7.1e-10 38.6 0.1 3.7e-09 36.3 0.0 2.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain RGP PF03214.8 gi|389847246|ref|YP_006349485.1| - 4.4e-17 61.8 0.0 6e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.1 gi|389847247|ref|YP_006349486.1| - 2.4e-17 63.0 0.0 3.1e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|389847247|ref|YP_006349486.1| - 1e-11 45.0 0.1 1.4e-11 44.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|389847247|ref|YP_006349486.1| - 6.9e-11 42.2 0.3 0.00019 21.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389847247|ref|YP_006349486.1| - 5.6e-06 26.3 0.9 2e-05 24.4 0.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389847247|ref|YP_006349486.1| - 5 7.4 7.7 12 6.1 5.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|389847248|ref|YP_006349487.1| - 3e-27 95.3 40.6 1.4e-14 54.0 10.9 4.2 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|389847249|ref|YP_006349488.1| - 7e-33 113.8 0.0 1.1e-32 113.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|389847249|ref|YP_006349488.1| - 2.8e-08 33.6 0.6 1.1e-07 31.7 0.1 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|389847249|ref|YP_006349488.1| - 1.5e-06 28.3 0.1 0.0044 17.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|389847249|ref|YP_006349488.1| - 0.0011 18.9 0.6 0.0027 17.7 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389847249|ref|YP_006349488.1| - 0.0012 18.9 0.3 0.0062 16.6 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389847249|ref|YP_006349488.1| - 0.0025 18.0 0.0 0.014 15.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|389847249|ref|YP_006349488.1| - 0.0039 15.9 0.0 0.0057 15.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|389847249|ref|YP_006349488.1| - 0.011 15.5 0.0 0.033 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|389847249|ref|YP_006349488.1| - 0.018 14.2 0.1 0.031 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|389847249|ref|YP_006349488.1| - 0.02 14.7 0.3 0.092 12.6 0.2 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|389847249|ref|YP_006349488.1| - 0.021 13.6 0.0 0.033 13.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_15 PF13175.1 gi|389847249|ref|YP_006349488.1| - 0.047 12.7 0.0 0.27 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|389847249|ref|YP_006349488.1| - 0.076 12.9 0.1 0.75 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|389847249|ref|YP_006349488.1| - 0.096 13.5 0.1 0.21 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|389847249|ref|YP_006349488.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|389847249|ref|YP_006349488.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|389847249|ref|YP_006349488.1| - 0.16 11.5 0.1 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PMT_2 PF13231.1 gi|389847250|ref|YP_006349489.1| - 9.8e-11 41.7 14.6 9.8e-11 41.7 10.1 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DoxX PF07681.7 gi|389847252|ref|YP_006349491.1| - 7.2e-05 23.1 3.7 0.00013 22.3 2.6 1.4 1 0 0 1 1 1 1 DoxX DoxX_3 PF13781.1 gi|389847252|ref|YP_006349491.1| - 0.00015 22.0 1.8 0.00015 22.0 1.2 2.3 2 1 1 3 3 3 1 DoxX-like family DoxX_2 PF13564.1 gi|389847252|ref|YP_006349491.1| - 0.00022 21.1 4.3 0.00039 20.3 3.0 1.4 1 0 0 1 1 1 1 DoxX-like family DUF4267 PF14087.1 gi|389847252|ref|YP_006349491.1| - 0.084 12.4 4.3 0.17 11.4 3.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) GHL5 PF14872.1 gi|389847253|ref|YP_006349492.1| - 2.8e-229 763.0 1.1 1.5e-224 747.4 0.2 2.9 1 1 1 2 2 2 2 Hypothetical glycoside hydrolase 5 Alpha-amylase PF00128.19 gi|662859483|ref|YP_006349493.2| - 9.8e-53 179.5 0.2 6.7e-52 176.8 0.1 1.9 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|662859483|ref|YP_006349493.2| - 1.1e-05 25.4 0.0 3e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.1 gi|662859483|ref|YP_006349493.2| - 0.0039 16.1 0.0 0.0084 15.0 0.0 1.5 2 0 0 2 2 2 1 glucanotransferase domain of human glycogen debranching enzyme Radical_SAM PF04055.16 gi|662859483|ref|YP_006349493.2| - 0.016 15.3 0.0 0.19 11.9 0.0 2.4 2 0 0 2 2 2 0 Radical SAM superfamily Glucodextran_N PF09137.6 gi|389847255|ref|YP_006349494.1| - 1.8e-38 132.3 0.5 4.6e-37 127.7 0.0 2.6 2 1 0 2 2 2 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.16 gi|389847255|ref|YP_006349494.1| - 1.3e-28 99.7 0.0 1.2e-22 80.1 0.0 3.7 3 1 0 3 3 3 2 Glycosyl hydrolases family 15 Glucodextran_B PF09136.5 gi|389847255|ref|YP_006349494.1| - 0.012 15.8 3.1 0.052 13.7 2.2 2.2 1 0 0 1 1 1 0 Glucodextranase, domain B Polyketide_cyc PF03364.15 gi|389847256|ref|YP_006349495.1| - 1e-09 38.4 0.0 1.5e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|389847256|ref|YP_006349495.1| - 4.1e-09 36.7 0.8 4.6e-09 36.5 0.5 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|389847256|ref|YP_006349495.1| - 0.21 11.6 1.2 0.65 10.1 0.8 1.9 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Response_reg PF00072.19 gi|389847257|ref|YP_006349496.1| - 2.4e-20 72.5 0.0 5.3e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|389847257|ref|YP_006349496.1| - 2.7e-16 59.2 0.4 1.3e-15 57.0 0.3 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389847257|ref|YP_006349496.1| - 3.6e-15 55.7 0.2 9.8e-15 54.3 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|389847257|ref|YP_006349496.1| - 3.3e-12 46.6 0.0 9.4e-12 45.1 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|389847257|ref|YP_006349496.1| - 1e-07 32.2 0.0 3e-07 30.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|389847257|ref|YP_006349496.1| - 1.3e-06 28.3 0.1 3.8e-06 26.9 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|389847257|ref|YP_006349496.1| - 2.9e-05 23.8 0.0 6.1e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|389847257|ref|YP_006349496.1| - 0.00039 20.9 0.0 0.0013 19.2 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|389847257|ref|YP_006349496.1| - 0.0007 19.7 0.0 0.0024 18.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|389847257|ref|YP_006349496.1| - 0.048 13.3 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EamA PF00892.15 gi|389847258|ref|YP_006349497.1| - 3.7e-24 85.1 27.0 6e-12 45.7 7.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389847258|ref|YP_006349497.1| - 6.2e-09 36.0 5.8 6.2e-09 36.0 4.0 3.2 3 1 1 4 4 4 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|389847258|ref|YP_006349497.1| - 0.00017 20.5 1.9 0.00036 19.4 1.3 1.5 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) Pyr_redox_2 PF07992.9 gi|389847259|ref|YP_006349498.1| - 4.5e-20 72.3 2.5 4.9e-14 52.6 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389847259|ref|YP_006349498.1| - 7.2e-16 58.0 1.5 2.4e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|389847259|ref|YP_006349498.1| - 1e-10 41.6 0.7 3.4e-07 30.1 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|389847259|ref|YP_006349498.1| - 3e-09 35.8 0.2 4e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|389847259|ref|YP_006349498.1| - 5.9e-09 35.2 1.8 7.2e-05 21.8 0.2 2.3 1 1 1 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|389847259|ref|YP_006349498.1| - 4e-07 30.2 3.6 0.00063 19.8 0.1 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|389847259|ref|YP_006349498.1| - 1.6e-06 27.2 3.6 2.2e-06 26.7 0.9 2.0 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|389847259|ref|YP_006349498.1| - 2.1e-06 27.6 0.1 5.5e-06 26.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|389847259|ref|YP_006349498.1| - 2.4e-06 26.8 3.0 0.0014 17.7 0.1 2.1 1 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|389847259|ref|YP_006349498.1| - 5.6e-05 22.2 0.6 0.08 11.8 0.1 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|389847259|ref|YP_006349498.1| - 0.0002 20.5 0.7 0.00087 18.4 0.1 2.0 1 1 1 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|389847259|ref|YP_006349498.1| - 0.00046 19.9 0.4 0.00078 19.1 0.2 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|389847259|ref|YP_006349498.1| - 0.00051 18.8 3.1 0.053 12.1 0.4 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|389847259|ref|YP_006349498.1| - 0.00058 20.2 1.9 0.0069 16.7 0.8 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|389847259|ref|YP_006349498.1| - 0.00096 18.3 4.0 0.0059 15.7 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|389847259|ref|YP_006349498.1| - 0.0021 17.6 0.7 0.0067 16.0 0.1 2.0 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.19 gi|389847259|ref|YP_006349498.1| - 0.005 15.9 0.1 0.014 14.5 0.0 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.1 gi|389847259|ref|YP_006349498.1| - 0.039 14.2 0.1 0.052 13.8 0.1 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding XdhC_C PF13478.1 gi|389847259|ref|YP_006349498.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain PA-IIL PF07472.6 gi|389847259|ref|YP_006349498.1| - 0.26 11.5 1.1 6.7 6.9 0.0 2.3 2 1 1 3 3 2 0 Fucose-binding lectin II (PA-IIL) Methyltransf_11 PF08241.7 gi|389847260|ref|YP_006349499.1| - 2.2e-21 76.1 0.0 4.4e-21 75.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389847260|ref|YP_006349499.1| - 4.3e-20 72.0 0.0 7e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847260|ref|YP_006349499.1| - 3.3e-12 46.2 0.0 5.6e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389847260|ref|YP_006349499.1| - 2.6e-11 43.7 0.0 5.3e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389847260|ref|YP_006349499.1| - 9.4e-09 35.6 0.0 2.7e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389847260|ref|YP_006349499.1| - 2.7e-08 33.2 0.0 4.3e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|389847260|ref|YP_006349499.1| - 2e-07 31.0 2.8 2e-07 31.0 1.9 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389847260|ref|YP_006349499.1| - 8.8e-07 29.5 0.1 2.5e-06 28.0 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Hydrolase PF00702.21 gi|389847260|ref|YP_006349499.1| - 0.00014 22.3 0.8 0.00024 21.5 0.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Methyltransf_29 PF03141.11 gi|389847260|ref|YP_006349499.1| - 0.00095 17.6 0.0 0.0012 17.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.10 gi|389847260|ref|YP_006349499.1| - 0.0041 16.7 0.0 0.0087 15.7 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|389847260|ref|YP_006349499.1| - 0.021 14.1 0.0 0.04 13.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Met_10 PF02475.11 gi|389847260|ref|YP_006349499.1| - 0.074 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein MetW PF07021.7 gi|389847260|ref|YP_006349499.1| - 0.094 12.0 0.0 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW QueC PF06508.8 gi|389847261|ref|YP_006349500.1| - 5.8e-73 244.6 0.0 6.7e-73 244.4 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|389847261|ref|YP_006349500.1| - 4.1e-08 32.9 0.0 6.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|389847261|ref|YP_006349500.1| - 4.7e-05 22.1 0.0 6.2e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|389847261|ref|YP_006349500.1| - 0.00037 19.4 0.0 0.00061 18.7 0.0 1.3 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|389847261|ref|YP_006349500.1| - 0.0031 17.0 0.1 0.0052 16.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Radical_SAM PF04055.16 gi|389847262|ref|YP_006349501.1| - 9.6e-25 87.6 0.4 2.4e-24 86.3 0.3 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|389847262|ref|YP_006349501.1| - 6.1e-16 58.5 0.0 1.1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|389847262|ref|YP_006349501.1| - 1.1e-07 32.0 0.0 1.7e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|389847263|ref|YP_006349502.1| - 8.1e-24 83.6 0.0 1e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase 4HBT_2 PF13279.1 gi|389847264|ref|YP_006349503.1| - 1.4e-13 51.3 0.0 1.8e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|389847264|ref|YP_006349503.1| - 2.2e-10 40.4 1.2 2.5e-10 40.3 0.1 1.7 2 0 0 2 2 2 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|389847264|ref|YP_006349503.1| - 3.2e-05 23.0 0.1 0.00047 19.1 0.1 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase BPS PF08947.5 gi|389847264|ref|YP_006349503.1| - 0.057 13.0 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 BPS (Between PH and SH2) ResIII PF04851.10 gi|389847266|ref|YP_006349505.1| - 6.6e-15 55.4 0.0 1.5e-14 54.2 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|389847266|ref|YP_006349505.1| - 1.1e-14 54.0 0.0 1.8e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|389847266|ref|YP_006349505.1| - 2.3e-10 40.1 0.0 4.7e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|389847266|ref|YP_006349505.1| - 1.4e-08 34.4 0.0 2.3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|389847266|ref|YP_006349505.1| - 0.00057 19.5 0.0 0.0022 17.7 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|389847266|ref|YP_006349505.1| - 0.0011 18.6 0.0 0.017 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389847266|ref|YP_006349505.1| - 0.0013 18.8 0.0 0.97 9.5 0.0 2.9 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|389847266|ref|YP_006349505.1| - 0.0016 17.4 0.0 0.17 10.7 0.0 2.3 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) MarR_2 PF12802.2 gi|389847266|ref|YP_006349505.1| - 0.013 15.1 0.1 0.034 13.8 0.1 1.7 1 0 0 1 1 1 0 MarR family Flavi_DEAD PF07652.9 gi|389847266|ref|YP_006349505.1| - 0.025 14.3 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain Zeta_toxin PF06414.7 gi|389847266|ref|YP_006349505.1| - 0.026 13.6 0.1 0.38 9.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin TrmB PF01978.14 gi|389847266|ref|YP_006349505.1| - 0.051 13.2 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|389847266|ref|YP_006349505.1| - 0.08 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.6 gi|389847268|ref|YP_006349507.1| - 2.3e-19 68.9 0.0 5e-19 67.8 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|389847268|ref|YP_006349507.1| - 5.8e-15 55.5 0.2 1.9e-14 53.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389847268|ref|YP_006349507.1| - 6.9e-14 52.2 1.3 4.2e-12 46.4 0.0 3.1 2 2 1 3 3 3 1 AAA ATPase domain AAA PF00004.24 gi|389847268|ref|YP_006349507.1| - 4.7e-06 26.8 0.2 1.9e-05 24.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389847268|ref|YP_006349507.1| - 6.2e-06 25.9 0.0 2e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|389847268|ref|YP_006349507.1| - 8.5e-06 25.3 0.0 2.2e-05 24.0 0.0 1.7 2 0 0 2 2 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|389847268|ref|YP_006349507.1| - 0.00013 21.6 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.9 gi|389847268|ref|YP_006349507.1| - 0.00093 19.1 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|389847268|ref|YP_006349507.1| - 0.00093 18.1 0.0 0.0018 17.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|389847268|ref|YP_006349507.1| - 0.0013 18.7 0.0 0.0029 17.6 0.0 1.6 2 0 0 2 2 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|389847268|ref|YP_006349507.1| - 0.0023 17.1 0.8 1.4 8.0 0.0 2.6 2 1 1 3 3 3 2 PhoH-like protein RNA_helicase PF00910.17 gi|389847268|ref|YP_006349507.1| - 0.0025 17.9 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.1 gi|389847268|ref|YP_006349507.1| - 0.0035 16.9 0.2 0.0054 16.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|389847268|ref|YP_006349507.1| - 0.004 16.2 0.3 0.15 10.9 0.0 2.3 1 1 1 2 2 2 1 KAP family P-loop domain DEAD PF00270.24 gi|389847268|ref|YP_006349507.1| - 0.0042 16.5 1.7 0.47 9.9 1.2 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|389847268|ref|YP_006349507.1| - 0.012 14.8 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|389847268|ref|YP_006349507.1| - 0.015 14.7 0.4 0.38 10.1 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|389847268|ref|YP_006349507.1| - 0.02 13.8 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|389847268|ref|YP_006349507.1| - 0.022 14.4 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|389847268|ref|YP_006349507.1| - 0.057 12.2 0.0 0.092 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|389847268|ref|YP_006349507.1| - 0.064 12.7 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|389847268|ref|YP_006349507.1| - 0.07 12.9 0.3 0.17 11.6 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function DUF87 Zot PF05707.7 gi|389847268|ref|YP_006349507.1| - 0.07 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|389847268|ref|YP_006349507.1| - 0.072 11.9 0.1 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|389847268|ref|YP_006349507.1| - 0.077 13.3 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|389847268|ref|YP_006349507.1| - 0.081 12.3 0.7 0.4 10.0 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|389847268|ref|YP_006349507.1| - 0.12 13.1 1.2 0.38 11.5 0.6 2.3 1 1 0 1 1 1 0 AAA domain MarR_2 PF12802.2 gi|389847269|ref|YP_006349508.1| - 0.00054 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|389847269|ref|YP_006349508.1| - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|389847269|ref|YP_006349508.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|389847269|ref|YP_006349508.1| - 0.026 14.1 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Crp PF00325.15 gi|389847269|ref|YP_006349508.1| - 0.031 13.7 0.1 0.031 13.7 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family HTH_27 PF13463.1 gi|389847269|ref|YP_006349508.1| - 0.031 14.5 0.0 0.085 13.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389847269|ref|YP_006349508.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TBP PF00352.16 gi|389847270|ref|YP_006349509.1| - 3.5e-66 218.5 0.0 3.2e-32 109.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|389847270|ref|YP_006349509.1| - 0.00021 21.3 0.0 0.61 10.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|389847270|ref|YP_006349509.1| - 0.2 10.9 0.6 8.1 5.8 0.2 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 MG1 PF11974.3 gi|389848345|ref|YP_006350584.1| - 1.6e-08 34.9 21.1 0.00031 21.2 1.6 3.3 1 1 2 3 3 3 3 Alpha-2-macroglobulin MG1 domain YtkA PF13115.1 gi|389848345|ref|YP_006350584.1| - 0.00046 20.4 21.0 0.021 15.1 0.6 5.0 1 1 3 5 5 5 2 YtkA-like DUF1533 PF07550.6 gi|389848345|ref|YP_006350584.1| - 0.0071 16.3 0.2 0.84 9.6 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF1533) DUF1939 PF09154.5 gi|389848345|ref|YP_006350584.1| - 0.014 15.3 13.4 0.43 10.5 0.1 4.9 3 2 2 5 5 5 0 Domain of unknown function (DUF1939) Bile_Hydr_Trans PF04775.9 gi|389848345|ref|YP_006350584.1| - 0.056 13.1 4.4 10 5.8 0.1 3.5 2 1 0 3 3 3 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region CBM_4_9 PF02018.12 gi|389848345|ref|YP_006350584.1| - 1.7 8.6 16.1 0.54 10.2 0.5 3.3 2 1 0 2 2 2 0 Carbohydrate binding domain MMR_HSR1_C PF08438.5 gi|389848342|ref|YP_006350581.1| - 1.1e-30 106.0 0.0 1.8e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|389848342|ref|YP_006350581.1| - 3.7e-20 72.0 0.0 9.5e-18 64.2 0.0 2.6 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|389848342|ref|YP_006350581.1| - 4.6e-10 39.1 0.0 1e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|389848342|ref|YP_006350581.1| - 1.9e-05 23.9 0.0 0.00043 19.5 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|389848342|ref|YP_006350581.1| - 0.0028 17.1 0.0 0.0066 15.8 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|389848342|ref|YP_006350581.1| - 0.0099 15.7 0.1 0.4 10.4 0.0 2.8 3 0 0 3 3 3 1 Dynamin family Miro PF08477.8 gi|389848342|ref|YP_006350581.1| - 0.017 15.6 0.0 0.14 12.7 0.0 2.4 2 1 0 2 2 2 0 Miro-like protein Ras PF00071.17 gi|389848342|ref|YP_006350581.1| - 0.05 12.9 0.1 8.6 5.7 0.0 2.3 2 0 0 2 2 2 0 Ras family Acetyltransf_4 PF13420.1 gi|389848340|ref|YP_006350579.1| - 1.2e-31 109.7 0.0 1.4e-31 109.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389848340|ref|YP_006350579.1| - 8.4e-16 57.7 0.0 1.4e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|389848340|ref|YP_006350579.1| - 8.8e-11 42.1 0.0 1.4e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389848340|ref|YP_006350579.1| - 1.2e-10 41.5 0.0 1.7e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389848340|ref|YP_006350579.1| - 1.8e-10 40.8 0.0 2.8e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848340|ref|YP_006350579.1| - 5.9e-08 32.7 0.0 8.3e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848340|ref|YP_006350579.1| - 1.7e-07 30.8 0.0 2.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|389848340|ref|YP_006350579.1| - 1.9e-07 31.0 0.0 4.1e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389848340|ref|YP_006350579.1| - 0.003 17.3 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Amidohydro_1 PF01979.15 gi|389848339|ref|YP_006350578.1| - 3.2e-45 155.2 0.4 4.5e-45 154.7 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|389848339|ref|YP_006350578.1| - 1.1e-13 51.8 4.2 1e-12 48.7 2.9 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|389848339|ref|YP_006350578.1| - 2.6e-10 40.0 0.3 2.6e-10 40.0 0.2 1.7 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|389848339|ref|YP_006350578.1| - 3.8e-05 23.4 2.1 6.2e-05 22.7 0.2 2.5 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|389848339|ref|YP_006350578.1| - 0.00053 18.9 0.0 0.00092 18.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_1 PF01979.15 gi|662859597|ref|YP_006350577.2| - 2.6e-45 155.5 8.3 3e-45 155.3 5.7 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|662859597|ref|YP_006350577.2| - 8.1e-23 81.8 15.9 1.3e-21 77.9 11.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|662859597|ref|YP_006350577.2| - 6.9e-12 45.0 0.3 2e-10 40.2 0.0 2.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|662859597|ref|YP_006350577.2| - 8.1e-12 45.0 21.2 1.4e-10 40.9 8.8 3.0 1 1 0 1 1 1 1 Amidohydrolase family MOSC_N PF03476.11 gi|389848336|ref|YP_006350575.1| - 7.3e-15 54.7 0.0 4.5e-14 52.1 0.0 2.1 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.12 gi|389848336|ref|YP_006350575.1| - 7e-14 51.4 0.0 1.1e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 MOSC domain Proteasome PF00227.21 gi|389848335|ref|YP_006350574.1| - 1.5e-51 174.4 0.0 1.9e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|389848335|ref|YP_006350574.1| - 1.8e-12 46.3 1.6 2.8e-12 45.7 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF1508 PF07411.7 gi|389848334|ref|YP_006350573.1| - 5.9e-26 89.6 0.2 6.9e-26 89.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) DUF2914 PF11141.3 gi|389848334|ref|YP_006350573.1| - 0.0092 15.4 0.0 0.1 12.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2914) DUF4177 PF13783.1 gi|389848333|ref|YP_006350572.1| - 1.8e-14 53.0 0.0 2.1e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DHFR_1 PF00186.14 gi|389848332|ref|YP_006350571.1| - 5.7e-49 165.7 0.0 6.5e-49 165.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|389848331|ref|YP_006350570.1| - 7.5e-99 330.1 0.0 9.2e-99 329.8 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase Lactamase_B PF00753.22 gi|389848330|ref|YP_006350569.1| - 7.1e-24 84.5 6.7 9.3e-24 84.1 4.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389848330|ref|YP_006350569.1| - 7.6e-05 22.3 1.6 0.00034 20.2 1.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|389848330|ref|YP_006350569.1| - 0.039 13.6 0.5 0.068 12.8 0.4 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Pectate_lyase_3 PF12708.2 gi|389848330|ref|YP_006350569.1| - 0.078 13.0 0.1 0.12 12.4 0.1 1.3 1 1 0 1 1 1 0 Pectate lyase superfamily protein Sod_Fe_C PF02777.13 gi|389848327|ref|YP_006350566.1| - 7.9e-36 122.1 0.1 1.3e-35 121.4 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|389848327|ref|YP_006350566.1| - 7.1e-32 109.5 1.2 1.2e-31 108.8 0.9 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF4066 PF13278.1 gi|389848326|ref|YP_006350565.1| - 4e-35 120.5 0.1 4.7e-35 120.3 0.1 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|389848326|ref|YP_006350565.1| - 9.2e-12 44.6 0.0 2.3e-11 43.3 0.0 1.6 1 1 1 2 2 2 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|389848326|ref|YP_006350565.1| - 0.00022 20.8 0.0 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain FAD_binding_7 PF03441.9 gi|389848325|ref|YP_006350564.1| - 5.9e-103 343.8 2.2 8.2e-103 343.4 1.5 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|389848325|ref|YP_006350564.1| - 3.6e-46 156.9 0.1 1.1e-45 155.2 0.0 1.8 2 0 0 2 2 2 1 DNA photolyase Methyltransf_26 PF13659.1 gi|389848325|ref|YP_006350564.1| - 0.24 11.4 1.6 8.6 6.4 0.9 2.5 2 1 0 2 2 2 0 Methyltransferase domain Lar_restr_allev PF14354.1 gi|389848324|ref|YP_006350563.1| - 0.0082 16.4 0.3 0.02 15.1 0.2 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|389848324|ref|YP_006350563.1| - 0.03 14.1 0.3 0.047 13.4 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons DnaJ_CXXCXGXG PF00684.14 gi|389848324|ref|YP_006350563.1| - 0.095 12.7 0.5 0.16 12.0 0.3 1.3 1 0 0 1 1 1 0 DnaJ central domain MAF_flag10 PF01973.13 gi|389848323|ref|YP_006350562.1| - 1e-19 70.6 0.0 1.3e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 DUF4439 PF14530.1 gi|389848323|ref|YP_006350562.1| - 0.033 14.6 1.0 0.054 13.9 0.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4439) Pterin_bind PF00809.17 gi|389848322|ref|YP_006350561.1| - 3e-30 105.1 0.0 5.3e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme SpoU_methylase PF00588.14 gi|389848320|ref|YP_006350559.1| - 2.5e-30 105.2 0.0 3.7e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family MaoC_dehydratas PF01575.14 gi|389848319|ref|YP_006350558.1| - 2.5e-14 52.7 0.0 3.4e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|389848319|ref|YP_006350558.1| - 0.00046 19.9 0.2 0.0009 19.0 0.1 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Peptidase_M48 PF01435.13 gi|662859594|ref|YP_006350556.2| - 7.5e-23 81.2 0.0 1.2e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|662859594|ref|YP_006350556.2| - 2.6e-06 26.6 0.0 4.8e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF1469 PF07332.6 gi|662859594|ref|YP_006350556.2| - 0.13 12.0 6.2 0.039 13.6 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|662859594|ref|YP_006350556.2| - 1.1 8.6 9.7 1.9 7.8 3.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) GatB_N PF02934.10 gi|389848316|ref|YP_006350555.1| - 1.9e-72 243.5 0.0 2.8e-72 242.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|389848316|ref|YP_006350555.1| - 3.3e-25 88.5 0.1 5.9e-25 87.7 0.1 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|389848316|ref|YP_006350555.1| - 1.8e-13 50.4 0.0 4.1e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|389848316|ref|YP_006350555.1| - 0.00031 20.6 0.3 0.00074 19.3 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein DUF2999 PF11212.3 gi|389848316|ref|YP_006350555.1| - 0.0087 16.0 0.0 0.043 13.8 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2999) tRNA_synt_1c_R1 PF04558.10 gi|389848316|ref|YP_006350555.1| - 0.049 13.1 0.1 0.098 12.1 0.0 1.5 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Lyase_1 PF00206.15 gi|662859593|ref|YP_006350554.2| - 1.3e-108 362.8 0.1 2.1e-108 362.2 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|662859593|ref|YP_006350554.2| - 7.8e-25 86.7 0.3 7.8e-25 86.7 0.2 2.7 3 0 0 3 3 3 1 Fumarase C C-terminus SBP_bac_8 PF13416.1 gi|389848314|ref|YP_006350553.1| - 3.2e-24 86.1 7.8 4.9e-24 85.5 5.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389848314|ref|YP_006350553.1| - 5.6e-22 78.8 14.9 7.7e-22 78.4 10.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389848314|ref|YP_006350553.1| - 0.00035 20.3 1.6 0.00088 19.0 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|389848314|ref|YP_006350553.1| - 0.012 15.3 2.3 0.068 12.7 1.6 2.2 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|389848313|ref|YP_006350552.1| - 1.2e-20 73.8 17.4 1.2e-20 73.8 12.1 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389848312|ref|YP_006350551.1| - 2.5e-15 56.4 15.5 4.9e-15 55.5 10.8 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|389848311|ref|YP_006350550.1| - 4.1e-31 108.1 0.0 7e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848311|ref|YP_006350550.1| - 1e-08 35.5 0.0 0.0014 18.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|389848311|ref|YP_006350550.1| - 9.3e-07 28.7 0.9 3.4e-06 26.9 0.2 2.3 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.12 gi|389848311|ref|YP_006350550.1| - 6.7e-05 22.9 0.1 0.0034 17.4 0.1 2.8 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|389848311|ref|YP_006350550.1| - 0.0012 18.1 0.1 0.11 11.6 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|389848311|ref|YP_006350550.1| - 0.0014 17.8 0.1 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|389848311|ref|YP_006350550.1| - 0.0014 18.7 0.0 0.0061 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|389848311|ref|YP_006350550.1| - 0.0022 17.1 0.0 0.043 12.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|389848311|ref|YP_006350550.1| - 0.0023 16.6 0.1 0.0053 15.4 0.1 1.5 1 1 1 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|389848311|ref|YP_006350550.1| - 0.0035 17.2 0.0 0.0088 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389848311|ref|YP_006350550.1| - 0.0047 16.9 0.2 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|389848311|ref|YP_006350550.1| - 0.0087 15.4 0.0 0.29 10.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|389848311|ref|YP_006350550.1| - 0.011 16.6 0.0 0.025 15.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|389848311|ref|YP_006350550.1| - 0.011 15.3 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|389848311|ref|YP_006350550.1| - 0.03 14.5 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|389848311|ref|YP_006350550.1| - 0.038 13.4 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|389848311|ref|YP_006350550.1| - 0.074 12.1 0.0 0.28 10.2 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|389848311|ref|YP_006350550.1| - 0.097 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|389848311|ref|YP_006350550.1| - 0.1 12.2 0.0 0.29 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BolA PF01722.13 gi|389848310|ref|YP_006350549.1| - 1.7e-21 75.9 0.1 2e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein MCPsignal PF00015.16 gi|389848309|ref|YP_006350548.1| - 4.5e-50 170.1 49.5 2.5e-47 161.2 22.0 3.0 2 1 1 3 3 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|389848309|ref|YP_006350548.1| - 5.5e-08 32.8 6.1 4.5e-07 29.9 1.2 5.5 6 1 0 6 6 5 2 HAMP domain APG6 PF04111.7 gi|389848309|ref|YP_006350548.1| - 0.00027 20.0 2.9 0.00027 20.0 2.0 3.2 1 1 2 3 3 3 1 Autophagy protein Apg6 DUF3584 PF12128.3 gi|389848309|ref|YP_006350548.1| - 0.0014 16.1 23.6 0.0019 15.6 16.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF2130 PF09903.4 gi|389848309|ref|YP_006350548.1| - 0.0022 16.7 2.2 0.022 13.5 0.1 2.8 2 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2130) Ferritin PF00210.19 gi|389848309|ref|YP_006350548.1| - 0.006 16.3 2.2 0.006 16.3 1.5 4.2 4 2 1 5 5 3 1 Ferritin-like domain AAA_13 PF13166.1 gi|389848309|ref|YP_006350548.1| - 0.015 13.8 14.8 0.46 8.8 1.0 2.2 1 1 1 2 2 2 0 AAA domain DUF4559 PF15112.1 gi|389848309|ref|YP_006350548.1| - 0.042 13.0 12.0 1.4 8.0 3.3 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4559) BAR_2 PF10455.4 gi|389848309|ref|YP_006350548.1| - 0.05 12.5 8.3 0.98 8.2 0.3 2.4 2 0 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Nup54 PF13874.1 gi|389848309|ref|YP_006350548.1| - 0.059 13.0 9.4 6.2 6.4 0.0 4.1 2 2 0 3 3 3 0 Nucleoporin complex subunit 54 RmuC PF02646.11 gi|389848309|ref|YP_006350548.1| - 0.066 12.0 12.2 0.64 8.8 0.5 4.0 2 2 1 4 4 4 0 RmuC family Fib_alpha PF08702.5 gi|389848309|ref|YP_006350548.1| - 0.12 12.5 6.1 1 9.4 0.2 3.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|389848309|ref|YP_006350548.1| - 0.12 12.1 27.4 0.099 12.5 0.8 5.5 4 2 2 6 6 5 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|389848309|ref|YP_006350548.1| - 0.13 12.0 15.5 0.83 9.4 0.8 4.1 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DASH_Dad2 PF08654.5 gi|389848309|ref|YP_006350548.1| - 0.17 11.9 15.9 3 7.9 0.1 5.0 4 1 1 5 5 5 0 DASH complex subunit Dad2 Syntaxin PF00804.20 gi|389848309|ref|YP_006350548.1| - 0.19 11.8 16.9 0.64 10.2 2.2 4.3 2 2 2 4 4 4 0 Syntaxin ISG65-75 PF11727.3 gi|389848309|ref|YP_006350548.1| - 0.39 9.7 26.5 0.038 13.0 0.6 3.5 1 1 3 4 4 4 0 Invariant surface glycoprotein BLOC1_2 PF10046.4 gi|389848309|ref|YP_006350548.1| - 0.43 10.7 21.3 3.5 7.8 1.8 5.1 3 2 2 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ApoO PF09769.4 gi|389848309|ref|YP_006350548.1| - 0.45 10.2 3.6 1.5 8.5 0.2 3.1 2 2 0 2 2 2 0 Apolipoprotein O AATF-Che1 PF13339.1 gi|389848309|ref|YP_006350548.1| - 0.83 9.8 13.4 10 6.2 0.5 4.2 1 1 4 5 5 5 0 Apoptosis antagonizing transcription factor Spc7 PF08317.6 gi|389848309|ref|YP_006350548.1| - 0.85 8.2 13.9 1.7 7.1 0.8 2.7 1 1 0 2 2 2 0 Spc7 kinetochore protein IncA PF04156.9 gi|389848309|ref|YP_006350548.1| - 1.1 8.7 23.5 38 3.7 6.6 4.8 2 1 1 3 3 3 0 IncA protein Phasin_2 PF09361.5 gi|389848309|ref|YP_006350548.1| - 1.2 9.2 27.0 0.033 14.2 1.1 4.4 2 1 2 4 4 4 0 Phasin protein CorA PF01544.13 gi|389848309|ref|YP_006350548.1| - 1.2 8.0 11.0 3.8 6.4 0.6 3.1 3 1 0 3 3 3 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|389848309|ref|YP_006350548.1| - 1.5 8.6 18.0 2.3 8.0 1.3 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) HSBP1 PF06825.7 gi|389848309|ref|YP_006350548.1| - 1.5 8.4 5.5 0.22 11.1 0.3 2.4 3 0 0 3 3 1 0 Heat shock factor binding protein 1 Seryl_tRNA_N PF02403.17 gi|389848309|ref|YP_006350548.1| - 1.8 8.5 19.8 0.71 9.9 1.3 4.5 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|389848309|ref|YP_006350548.1| - 1.9 7.6 6.4 24 4.0 1.5 2.7 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Spectrin PF00435.16 gi|389848309|ref|YP_006350548.1| - 2.3 8.5 16.7 1.3 9.3 0.3 5.0 1 1 5 6 6 6 0 Spectrin repeat Mod_r PF07200.8 gi|389848309|ref|YP_006350548.1| - 3.1 7.6 11.4 2.9 7.7 3.2 3.7 2 2 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Prominin PF05478.6 gi|389848309|ref|YP_006350548.1| - 3.4 5.0 11.2 3.9 4.8 2.3 2.6 2 1 1 3 3 3 0 Prominin DUF2365 PF10157.4 gi|389848309|ref|YP_006350548.1| - 4.1 7.2 17.2 0.52 10.1 1.0 4.4 3 2 2 5 5 4 0 Uncharacterized conserved protein (DUF2365) COG2 PF06148.6 gi|389848309|ref|YP_006350548.1| - 4.3 7.2 21.3 1.1 9.0 2.0 5.0 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 TBPIP PF07106.8 gi|389848309|ref|YP_006350548.1| - 4.8 6.6 9.7 5.4 6.5 0.5 3.1 3 1 0 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ING PF12998.2 gi|389848309|ref|YP_006350548.1| - 5.7 7.2 8.4 43 4.4 0.0 3.7 2 2 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding LOH1CR12 PF10158.4 gi|389848309|ref|YP_006350548.1| - 5.8 6.7 6.1 2.4 7.9 0.5 2.9 2 1 2 4 4 3 0 Tumour suppressor protein IFT57 PF10498.4 gi|389848309|ref|YP_006350548.1| - 7.5 5.1 11.6 0.65 8.6 0.0 2.8 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 HhH-GPD PF00730.20 gi|389848305|ref|YP_006350544.1| - 6.6e-19 68.1 0.0 9.3e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|389848305|ref|YP_006350544.1| - 1.9e-07 30.3 0.0 4.3e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif FMN_red PF03358.10 gi|662859592|ref|YP_006350543.2| - 4e-37 127.0 0.0 4.8e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|662859592|ref|YP_006350543.2| - 1.1e-08 34.7 0.0 1.6e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|662859592|ref|YP_006350543.2| - 0.081 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain TK PF00265.13 gi|662859591|ref|YP_006350542.2| - 1.1e-48 165.1 0.0 1.3e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase Yip1 PF04893.12 gi|662859590|ref|YP_006350541.2| - 8.7e-11 41.6 19.7 1.2e-10 41.1 13.7 1.2 1 0 0 1 1 1 1 Yip1 domain tRNA_anti-codon PF01336.20 gi|389848301|ref|YP_006350540.1| - 3.7e-12 45.9 0.1 8.1e-12 44.8 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|389848301|ref|YP_006350540.1| - 7.3e-10 38.8 0.2 2.8e-09 36.9 0.0 2.0 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|389848301|ref|YP_006350540.1| - 0.00086 19.1 0.0 0.0023 17.7 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RAP1 PF07218.6 gi|389848301|ref|YP_006350540.1| - 0.024 12.7 0.9 0.034 12.2 0.6 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) tRNA_anti-like PF12869.2 gi|389848301|ref|YP_006350540.1| - 0.064 12.7 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 tRNA_anti-like Radical_SAM PF04055.16 gi|389848300|ref|YP_006350539.1| - 1.3e-22 80.7 0.0 3e-22 79.5 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|389848300|ref|YP_006350539.1| - 2.6e-10 40.1 0.5 6.7e-10 38.8 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848300|ref|YP_006350539.1| - 0.0026 17.8 0.1 0.0096 16.0 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848300|ref|YP_006350539.1| - 0.013 15.6 0.0 0.043 13.9 0.1 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain MS_channel PF00924.13 gi|389848299|ref|YP_006350538.1| - 1.7e-46 158.1 0.3 1.7e-46 158.1 0.2 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel MCPsignal PF00015.16 gi|389848298|ref|YP_006350537.1| - 6.4e-43 146.7 45.5 2.5e-41 141.5 19.9 2.7 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|389848298|ref|YP_006350537.1| - 5.3e-13 49.2 3.1 1.1e-12 48.2 0.0 2.8 3 1 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|389848298|ref|YP_006350537.1| - 1.8e-11 44.0 1.3 5.4e-10 39.2 0.0 3.5 3 1 0 3 3 3 1 PAS fold PAS PF00989.19 gi|389848298|ref|YP_006350537.1| - 4.5e-09 36.0 0.1 2.9e-08 33.4 0.0 2.5 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|389848298|ref|YP_006350537.1| - 0.00053 19.7 0.0 0.0048 16.7 0.0 2.6 2 0 0 2 2 2 1 PAS domain Ferritin PF00210.19 gi|389848298|ref|YP_006350537.1| - 0.0025 17.5 1.5 0.0025 17.5 1.0 3.0 2 1 0 2 2 2 1 Ferritin-like domain IncA PF04156.9 gi|389848298|ref|YP_006350537.1| - 0.0073 15.9 18.6 0.039 13.5 0.5 2.7 2 1 0 2 2 2 1 IncA protein LOH1CR12 PF10158.4 gi|389848298|ref|YP_006350537.1| - 0.0082 15.9 0.4 0.0082 15.9 0.3 2.8 2 1 1 3 3 3 1 Tumour suppressor protein Mg_chelatase_2 PF13335.1 gi|389848298|ref|YP_006350537.1| - 0.018 15.4 2.9 0.018 15.4 2.0 3.7 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|389848298|ref|YP_006350537.1| - 0.13 10.7 21.9 0.2 10.0 13.0 2.0 1 1 1 2 2 2 0 AAA domain TMPIT PF07851.8 gi|389848298|ref|YP_006350537.1| - 0.15 11.0 10.0 0.16 11.0 2.4 2.6 2 0 0 2 2 2 0 TMPIT-like protein Spc7 PF08317.6 gi|389848298|ref|YP_006350537.1| - 0.31 9.6 21.6 0.2 10.2 2.0 2.9 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF948 PF06103.6 gi|389848298|ref|YP_006350537.1| - 0.4 10.5 29.5 0.22 11.3 3.2 5.0 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Seryl_tRNA_N PF02403.17 gi|389848298|ref|YP_006350537.1| - 0.43 10.6 19.1 7.5 6.6 0.8 4.2 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|389848298|ref|YP_006350537.1| - 0.54 10.2 14.7 0.23 11.3 0.3 3.5 3 1 1 4 4 3 0 Domain of unknown function (DUF4200) DinB PF05163.7 gi|389848298|ref|YP_006350537.1| - 0.7 9.5 12.4 0.071 12.8 2.6 2.7 1 1 1 3 3 3 0 DinB family ApoO PF09769.4 gi|389848298|ref|YP_006350537.1| - 0.94 9.1 6.8 10 5.8 0.1 2.7 2 1 0 2 2 2 0 Apolipoprotein O Atg14 PF10186.4 gi|389848298|ref|YP_006350537.1| - 0.97 8.3 10.4 37 3.1 2.1 2.5 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|389848298|ref|YP_006350537.1| - 1.3 8.7 30.6 0.15 11.7 4.3 4.6 2 2 4 6 6 6 0 Laminin Domain II DUF1664 PF07889.7 gi|389848298|ref|YP_006350537.1| - 1.5 8.6 28.2 0.81 9.4 2.1 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|389848298|ref|YP_006350537.1| - 2.6 5.7 18.5 5.9 4.6 12.7 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Muted PF14942.1 gi|389848298|ref|YP_006350537.1| - 2.7 7.8 21.9 0.42 10.4 3.0 3.5 2 1 1 4 4 4 0 Organelle biogenesis, Muted-like protein Prominin PF05478.6 gi|389848298|ref|YP_006350537.1| - 3.1 5.2 15.7 6.1 4.2 10.2 1.8 1 1 0 1 1 1 0 Prominin AATF-Che1 PF13339.1 gi|389848298|ref|YP_006350537.1| - 3.6 7.7 18.3 1.6 8.8 1.2 3.7 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Cytochrom_C_2 PF01322.15 gi|389848298|ref|YP_006350537.1| - 4.4 7.8 17.4 16 6.0 3.6 3.9 1 1 3 4 4 4 0 Cytochrome C' Fzo_mitofusin PF04799.8 gi|389848298|ref|YP_006350537.1| - 6.6 6.0 15.0 0.17 11.2 1.1 3.5 2 2 2 4 4 4 0 fzo-like conserved region DUF3407 PF11887.3 gi|389848298|ref|YP_006350537.1| - 7.4 5.7 14.0 0.38 9.9 1.6 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3407) FlgN PF05130.7 gi|389848298|ref|YP_006350537.1| - 9.9 6.4 25.8 8.8 6.5 1.1 4.3 1 1 4 5 5 5 0 FlgN protein Acetyltransf_1 PF00583.19 gi|389848297|ref|YP_006350536.1| - 3e-15 56.0 1.0 4.3e-15 55.5 0.7 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|389848297|ref|YP_006350536.1| - 2.3e-12 46.8 0.0 3.2e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389848297|ref|YP_006350536.1| - 5.1e-10 39.4 0.1 6e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848297|ref|YP_006350536.1| - 5.3e-09 36.0 0.5 1.2e-08 34.8 0.3 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848297|ref|YP_006350536.1| - 6.5e-07 29.0 0.1 8.8e-07 28.5 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|389848297|ref|YP_006350536.1| - 0.0001 22.2 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Autoind_synth PF00765.12 gi|389848297|ref|YP_006350536.1| - 0.0016 17.7 0.1 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Autoinducer synthetase Acetyltransf_CG PF14542.1 gi|389848297|ref|YP_006350536.1| - 0.002 17.9 0.1 0.0037 17.1 0.1 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FbpA PF05833.6 gi|389848295|ref|YP_006350534.1| - 6.6e-94 315.0 0.5 8.6e-94 314.6 0.4 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|389848295|ref|YP_006350534.1| - 1.8e-27 95.0 0.0 3.5e-27 94.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) CENP-B_dimeris PF09026.5 gi|389848295|ref|YP_006350534.1| - 0.019 15.1 2.7 0.066 13.4 1.8 1.8 1 0 0 1 1 1 0 Centromere protein B dimerisation domain THOC7 PF05615.8 gi|389848295|ref|YP_006350534.1| - 1.6 8.9 12.1 6.9 6.9 0.7 2.7 3 0 0 3 3 3 0 Tho complex subunit 7 Atg14 PF10186.4 gi|389848295|ref|YP_006350534.1| - 4.6 6.0 5.8 9.6 5.0 0.5 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4013 PF13197.1 gi|389848294|ref|YP_006350533.1| - 9e-42 142.2 23.6 9e-42 142.2 16.3 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) EI24 PF07264.6 gi|389848294|ref|YP_006350533.1| - 0.14 11.6 20.1 0.95 8.8 14.1 1.9 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) TMP_2 PF06791.8 gi|389848294|ref|YP_006350533.1| - 0.19 11.3 1.4 5.6 6.5 1.5 2.2 2 0 0 2 2 2 0 Prophage tail length tape measure protein ERGIC_N PF13850.1 gi|389848294|ref|YP_006350533.1| - 0.43 10.5 2.7 7.9 6.5 0.0 3.0 3 0 0 3 3 3 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Peptidase_M50 PF02163.17 gi|389848294|ref|YP_006350533.1| - 1.3 7.9 6.6 1.2 8.0 0.9 2.4 1 1 1 2 2 2 0 Peptidase family M50 DUF4131 PF13567.1 gi|389848294|ref|YP_006350533.1| - 3.6 6.9 7.5 4.2 6.7 2.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4013 PF13197.1 gi|389848293|ref|YP_006350532.1| - 7e-35 119.8 21.4 7e-35 119.8 14.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) PDGLE PF13190.1 gi|389848293|ref|YP_006350532.1| - 0.004 16.7 2.1 0.079 12.6 0.0 3.2 3 2 1 4 4 4 1 PDGLE domain DUF4244 PF14029.1 gi|389848293|ref|YP_006350532.1| - 9.1 5.4 8.3 0.68 9.0 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) eRF1_1 PF03463.10 gi|389848292|ref|YP_006350531.1| - 1.1e-32 112.3 0.3 1.7e-32 111.7 0.2 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|389848292|ref|YP_006350531.1| - 8.5e-25 87.2 1.0 3e-24 85.4 0.1 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|389848292|ref|YP_006350531.1| - 9.4e-17 61.5 0.0 1.9e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 Tachylectin PF14517.1 gi|389848292|ref|YP_006350531.1| - 0.054 12.8 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 Tachylectin OCD_Mu_crystall PF02423.10 gi|662859589|ref|YP_006350530.2| - 2.2e-64 217.2 1.4 2.7e-64 216.8 1.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|662859589|ref|YP_006350530.2| - 0.00024 21.4 0.6 0.00058 20.2 0.4 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|662859589|ref|YP_006350530.2| - 0.0013 18.7 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|662859589|ref|YP_006350530.2| - 0.018 15.3 0.1 0.038 14.2 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|662859589|ref|YP_006350530.2| - 0.021 14.6 0.2 0.035 13.9 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|662859589|ref|YP_006350530.2| - 0.064 13.7 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|662859589|ref|YP_006350530.2| - 0.14 12.3 0.2 0.27 11.5 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding IncA PF04156.9 gi|389848290|ref|YP_006350529.1| - 8.6e-06 25.4 3.1 9.7e-06 25.3 2.2 1.0 1 0 0 1 1 1 1 IncA protein MFS_1 PF07690.11 gi|662859588|ref|YP_006350528.2| - 3.7e-29 101.5 61.3 1.6e-21 76.4 18.8 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|662859588|ref|YP_006350528.2| - 0.14 10.2 24.6 0.3 9.1 5.0 2.6 2 1 0 2 2 2 0 Transmembrane secretion effector PepSY_TM_1 PF13172.1 gi|662859588|ref|YP_006350528.2| - 1.5 8.6 11.3 1.5 8.6 1.3 4.1 2 0 0 2 2 2 0 PepSY-associated TM helix DUF3054 PF11255.3 gi|389848288|ref|YP_006350527.1| - 2.7e-27 94.8 8.5 3.1e-27 94.6 5.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) HGWP PF03578.10 gi|389848288|ref|YP_006350527.1| - 0.084 12.2 0.1 0.28 10.5 0.1 1.9 1 0 0 1 1 1 0 HGWP repeat Methyltransf_11 PF08241.7 gi|389848287|ref|YP_006350526.1| - 1.1e-18 67.4 0.0 1.8e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389848287|ref|YP_006350526.1| - 4.2e-13 49.3 0.0 6.4e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389848287|ref|YP_006350526.1| - 5.4e-11 42.2 0.0 6.6e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389848287|ref|YP_006350526.1| - 2.1e-10 40.1 0.0 3.8e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|389848287|ref|YP_006350526.1| - 2.1e-09 37.7 0.0 3.7e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389848287|ref|YP_006350526.1| - 9.1e-09 35.5 0.0 1.9e-08 34.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389848287|ref|YP_006350526.1| - 8e-08 32.8 0.0 1.5e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|389848287|ref|YP_006350526.1| - 0.0002 21.0 0.0 0.00049 19.8 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|389848287|ref|YP_006350526.1| - 0.0057 16.6 1.8 0.06 13.3 1.3 2.2 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|389848287|ref|YP_006350526.1| - 0.02 14.2 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.1 gi|389848287|ref|YP_006350526.1| - 0.041 14.7 0.1 0.08 13.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Acetyltransf_1 PF00583.19 gi|389848286|ref|YP_006350525.1| - 1.3e-05 25.1 0.0 2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|389848286|ref|YP_006350525.1| - 0.01 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848286|ref|YP_006350525.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain XPG_I PF00867.13 gi|389848285|ref|YP_006350524.1| - 1.2e-25 89.3 0.0 2.4e-25 88.4 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|389848285|ref|YP_006350524.1| - 2e-12 47.2 0.0 3.5e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|389848285|ref|YP_006350524.1| - 0.00041 20.5 0.2 0.0015 18.7 0.0 1.9 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|389848285|ref|YP_006350524.1| - 0.0007 19.0 0.0 0.0012 18.2 0.0 1.5 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain DUF2379 PF09543.5 gi|389848284|ref|YP_006350523.1| - 0.071 13.0 0.4 8.5 6.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2379) TAT_signal PF10518.4 gi|389848284|ref|YP_006350523.1| - 0.076 13.0 3.3 0.2 11.7 2.3 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_3 PF00202.16 gi|662859587|ref|YP_006350522.2| - 1.4e-63 214.7 0.0 5e-63 212.9 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III UPF0118 PF01594.11 gi|662859586|ref|YP_006350521.2| - 2.5e-27 95.7 28.4 5.1e-27 94.7 19.7 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF20 PadR PF03551.9 gi|389848281|ref|YP_006350520.1| - 8.2e-17 60.7 2.4 1e-16 60.4 1.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|389848281|ref|YP_006350520.1| - 0.00021 21.5 0.1 0.00027 21.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|389848281|ref|YP_006350520.1| - 0.0028 17.2 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|389848281|ref|YP_006350520.1| - 0.0062 16.3 0.1 0.008 15.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|389848281|ref|YP_006350520.1| - 0.042 13.8 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|389848281|ref|YP_006350520.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 HemN C-terminal domain MarR_2 PF12802.2 gi|389848281|ref|YP_006350520.1| - 0.17 11.5 0.4 4.3 7.0 0.1 2.2 2 0 0 2 2 2 0 MarR family Nup35_RRM_2 PF14605.1 gi|389848280|ref|YP_006350519.1| - 0.14 11.9 0.5 19 5.1 0.0 2.2 1 1 1 2 2 2 0 Nup53/35/40-type RNA recognition motif HypA PF01155.14 gi|662859585|ref|YP_006350517.2| - 0.004 16.8 0.9 0.0065 16.1 0.6 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|662859585|ref|YP_006350517.2| - 0.0064 16.2 2.8 0.86 9.4 0.1 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|662859585|ref|YP_006350517.2| - 0.0069 16.0 1.3 0.012 15.2 0.9 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|662859585|ref|YP_006350517.2| - 0.015 15.1 0.4 0.024 14.4 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon BRK PF07533.11 gi|662859585|ref|YP_006350517.2| - 0.042 13.3 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 BRK domain TF_Zn_Ribbon PF08271.7 gi|662859585|ref|YP_006350517.2| - 0.098 11.9 2.6 0.25 10.6 1.6 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding Ribosomal_S14 PF00253.16 gi|662859585|ref|YP_006350517.2| - 0.1 11.9 1.7 0.25 10.7 1.0 1.8 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e DNA_RNApol_7kD PF03604.8 gi|662859585|ref|YP_006350517.2| - 0.11 12.0 0.8 0.19 11.2 0.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit YABBY PF04690.8 gi|662859585|ref|YP_006350517.2| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 YABBY protein DUF1451 PF07295.6 gi|662859585|ref|YP_006350517.2| - 0.15 11.8 3.4 0.16 11.7 0.5 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|662859585|ref|YP_006350517.2| - 0.68 9.9 3.5 2.4 8.1 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|662859585|ref|YP_006350517.2| - 0.91 8.8 4.8 2.2 7.5 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|662859585|ref|YP_006350517.2| - 4.4 6.9 7.2 58 3.3 5.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|662859584|ref|YP_006350516.2| - 0.0056 16.1 0.5 0.39 10.2 0.0 2.4 3 0 0 3 3 3 2 RNA polymerase I-specific transcription initiation factor Rrn7 NUDIX PF00293.23 gi|389848276|ref|YP_006350515.1| - 1e-16 60.8 0.5 1.5e-16 60.2 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain GvpL_GvpF PF06386.6 gi|389848276|ref|YP_006350515.1| - 0.12 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF THF_DHG_CYH_C PF02882.14 gi|389848275|ref|YP_006350514.1| - 2.2e-68 228.3 2.3 3e-68 227.9 1.6 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|389848275|ref|YP_006350514.1| - 3.4e-38 130.2 0.1 5.5e-38 129.6 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GreA_GreB PF01272.14 gi|389848275|ref|YP_006350514.1| - 0.025 14.2 0.1 0.53 10.0 0.0 2.3 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term VIT1 PF01988.14 gi|389848274|ref|YP_006350513.1| - 5.7e-17 61.9 17.9 1.3e-14 54.2 12.4 2.0 1 1 0 1 1 1 1 VIT family MerE PF05052.7 gi|389848274|ref|YP_006350513.1| - 3.6 7.6 5.7 0.97 9.4 0.7 2.2 2 1 0 2 2 2 0 MerE protein DUF211 PF02680.9 gi|389848273|ref|YP_006350512.1| - 2.2e-33 113.8 0.2 2.5e-33 113.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 SHMT PF00464.14 gi|389848272|ref|YP_006350511.1| - 1.8e-156 520.5 0.0 2.1e-156 520.3 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|389848272|ref|YP_006350511.1| - 2e-09 36.8 0.0 3.8e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|389848272|ref|YP_006350511.1| - 6.8e-06 25.4 0.0 0.00014 21.1 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Trypsin_2 PF13365.1 gi|389848272|ref|YP_006350511.1| - 0.091 12.7 0.0 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 Trypsin-like peptidase domain YcaO PF02624.11 gi|389848270|ref|YP_006350509.1| - 3.8e-66 223.8 4.8 3.8e-66 223.8 3.3 1.8 2 0 0 2 2 2 1 YcaO-like family DUF63 PF01889.12 gi|389848269|ref|YP_006350508.1| - 7.2e-37 127.9 9.3 1.1e-35 123.9 6.2 2.5 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 HTH_AsnC-type PF13404.1 gi|389848268|ref|YP_006350507.1| - 8.7e-17 60.3 1.2 1.8e-16 59.4 0.8 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389848268|ref|YP_006350507.1| - 4e-16 58.1 0.0 7.5e-16 57.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|389848268|ref|YP_006350507.1| - 8.3e-16 57.4 0.0 1.2e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|389848268|ref|YP_006350507.1| - 3e-08 33.2 0.1 6.9e-07 28.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|389848268|ref|YP_006350507.1| - 5.2e-08 32.5 0.1 1.1e-07 31.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389848268|ref|YP_006350507.1| - 1.5e-05 24.4 0.0 6.6e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389848268|ref|YP_006350507.1| - 2.9e-05 23.6 0.0 7e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|389848268|ref|YP_006350507.1| - 0.00084 18.9 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|389848268|ref|YP_006350507.1| - 0.0031 17.7 0.0 0.029 14.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|389848268|ref|YP_006350507.1| - 0.0054 16.6 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|389848268|ref|YP_006350507.1| - 0.0067 15.9 0.1 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389848268|ref|YP_006350507.1| - 0.024 14.3 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389848268|ref|YP_006350507.1| - 0.032 13.8 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|389848268|ref|YP_006350507.1| - 0.041 13.3 0.0 0.12 11.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|389848268|ref|YP_006350507.1| - 0.05 12.7 0.1 0.087 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2774 PF11242.3 gi|389848268|ref|YP_006350507.1| - 0.078 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) Myb_DNA-bind_6 PF13921.1 gi|389848268|ref|YP_006350507.1| - 0.1 12.6 0.0 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Myb-like DNA-binding domain Secretogranin_V PF05281.6 gi|389848268|ref|YP_006350507.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) Inositol_P PF00459.20 gi|389848267|ref|YP_006350506.1| - 7.3e-53 179.6 2.4 8.2e-53 179.4 1.7 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF1771 PF08590.5 gi|389848266|ref|YP_006350505.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DUF668 PF05003.7 gi|389848266|ref|YP_006350505.1| - 0.11 12.7 0.0 2.1 8.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF668) NicO PF03824.11 gi|389848264|ref|YP_006350503.1| - 6.5e-07 28.9 22.6 2.1e-06 27.2 15.7 1.8 1 1 0 1 1 1 1 High-affinity nickel-transport protein DUF2910 PF11139.3 gi|389848264|ref|YP_006350503.1| - 0.69 9.0 23.1 0.065 12.3 4.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2910) DUF309 PF03745.9 gi|389848262|ref|YP_006350501.1| - 8e-14 50.8 0.1 1.1e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Aldo_ket_red PF00248.16 gi|389848262|ref|YP_006350501.1| - 0.13 11.0 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family AstE_AspA PF04952.9 gi|389848261|ref|YP_006350500.1| - 3e-10 39.4 0.0 4.1e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family HAD_2 PF13419.1 gi|389848260|ref|YP_006350499.1| - 6.5e-20 72.0 0.6 7.6e-20 71.8 0.4 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389848260|ref|YP_006350499.1| - 8.6e-12 44.6 0.8 2.2e-11 43.3 0.5 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like UPF0179 PF03684.8 gi|389848259|ref|YP_006350498.1| - 2.1e-51 173.2 0.0 2.4e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|389848259|ref|YP_006350498.1| - 0.00088 19.2 1.1 0.0021 18.0 0.1 1.9 2 0 0 2 2 2 1 Transposase DDE domain DUF2188 PF09954.4 gi|389848258|ref|YP_006350497.1| - 0.082 12.8 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) PrkA PF06798.7 gi|389848257|ref|YP_006350496.1| - 5.6e-76 255.1 6.1 1.1e-75 254.1 4.2 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|389848257|ref|YP_006350496.1| - 3.3e-63 213.5 0.0 6e-63 212.6 0.0 1.4 1 1 0 1 1 1 1 PrkA AAA domain CLTH PF10607.4 gi|389848257|ref|YP_006350496.1| - 0.023 14.4 0.3 1.7 8.3 0.0 3.1 3 0 0 3 3 3 0 CTLH/CRA C-terminal to LisH motif domain AAA_5 PF07728.9 gi|389848257|ref|YP_006350496.1| - 0.37 10.5 1.6 8.5 6.0 0.2 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_PrkA PF08298.6 gi|389848256|ref|YP_006350495.1| - 3.2e-16 58.9 0.0 7.3e-13 47.9 0.0 2.9 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|389848256|ref|YP_006350495.1| - 7.7e-07 28.6 0.0 4.5e-06 26.1 0.0 2.0 1 1 0 1 1 1 1 PrkA serine protein kinase C-terminal domain DUF444 PF04285.7 gi|389848255|ref|YP_006350494.1| - 3.9e-94 315.6 0.2 4.4e-94 315.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) SpoVR PF04293.8 gi|389848254|ref|YP_006350493.1| - 3.5e-86 289.2 9.8 6.4e-73 245.5 2.2 2.1 2 0 0 2 2 2 2 SpoVR like protein DsbB PF02600.11 gi|389848252|ref|YP_006350491.1| - 6.9e-30 103.8 8.4 1.1e-29 103.2 5.8 1.3 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB DUF4010 PF13194.1 gi|389848251|ref|YP_006350490.1| - 2.3e-53 180.6 19.2 2.3e-53 180.6 13.3 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|389848251|ref|YP_006350490.1| - 2.4e-08 33.8 6.4 5.1e-06 26.3 1.4 4.5 4 1 0 4 4 4 2 MgtC family CRA PF06589.6 gi|389848251|ref|YP_006350490.1| - 0.048 12.9 0.1 0.14 11.4 0.1 1.8 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) Podoplanin PF05808.6 gi|389848251|ref|YP_006350490.1| - 2.7 7.5 13.1 1.2 8.7 0.7 3.6 3 1 0 3 3 3 0 Podoplanin 3HCDH_N PF02737.13 gi|389848250|ref|YP_006350489.1| - 9.7e-69 230.6 0.4 1.7e-68 229.8 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|389848250|ref|YP_006350489.1| - 5.7e-62 209.0 0.0 9.6e-62 208.2 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|389848250|ref|YP_006350489.1| - 6.8e-50 167.4 1.9 2.1e-32 111.3 0.0 3.8 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|389848250|ref|YP_006350489.1| - 2.7e-10 40.2 0.0 4.7e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|389848250|ref|YP_006350489.1| - 1.1e-05 25.7 0.7 4.3e-05 23.8 0.5 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|389848250|ref|YP_006350489.1| - 2.4e-05 24.2 0.1 6.2e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|389848250|ref|YP_006350489.1| - 0.05 12.9 0.1 0.089 12.1 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DFP PF04127.10 gi|389848250|ref|YP_006350489.1| - 0.061 12.9 0.3 0.16 11.5 0.1 1.8 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Malic_M PF03949.10 gi|389848250|ref|YP_006350489.1| - 0.068 12.7 0.9 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 Malic enzyme, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|389848250|ref|YP_006350489.1| - 0.093 11.8 1.0 0.75 8.9 0.7 2.2 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HhH-GPD PF00730.20 gi|389848249|ref|YP_006350488.1| - 2e-18 66.6 0.0 2.5e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein RimK PF08443.6 gi|389848248|ref|YP_006350487.1| - 1.1e-26 93.4 0.0 2.5e-26 92.3 0.0 1.5 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|389848248|ref|YP_006350487.1| - 2.6e-09 36.8 0.2 1.8e-07 30.9 0.2 2.3 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|389848248|ref|YP_006350487.1| - 5.2e-07 28.9 0.0 1.3e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Asp_protease_2 PF13650.1 gi|389848248|ref|YP_006350487.1| - 0.00018 21.9 0.8 0.00048 20.5 0.6 1.8 1 0 0 1 1 1 1 Aspartyl protease ATP-grasp_3 PF02655.9 gi|389848248|ref|YP_006350487.1| - 0.00084 19.2 0.0 0.0077 16.1 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain gag-asp_proteas PF13975.1 gi|389848248|ref|YP_006350487.1| - 0.029 14.1 0.1 0.058 13.2 0.1 1.5 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease ATP-grasp_4 PF13535.1 gi|389848248|ref|YP_006350487.1| - 0.061 13.0 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain RVP PF00077.15 gi|389848248|ref|YP_006350487.1| - 0.13 12.2 0.1 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Retroviral aspartyl protease AstE_AspA PF04952.9 gi|389848247|ref|YP_006350486.1| - 5.6e-66 222.3 0.0 6.4e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.17 gi|662859583|ref|YP_006350485.2| - 1.6e-22 79.5 6.8 1.9e-22 79.3 4.7 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|662859583|ref|YP_006350485.2| - 0.083 12.9 6.7 0.15 12.1 4.7 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|662859583|ref|YP_006350485.2| - 0.1 12.0 5.2 0.16 11.4 3.6 1.3 1 0 0 1 1 1 0 PgaD-like protein Sdh_cyt PF01127.17 gi|389848245|ref|YP_006350484.1| - 8.6e-11 41.7 4.6 1.1e-10 41.3 3.2 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Colicin_V PF02674.11 gi|389848245|ref|YP_006350484.1| - 0.69 9.7 7.7 0.9 9.3 5.3 1.2 1 0 0 1 1 1 0 Colicin V production protein Fer2_3 PF13085.1 gi|389848244|ref|YP_006350483.1| - 5.5e-31 106.6 0.0 1.1e-30 105.7 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|389848244|ref|YP_006350483.1| - 9.9e-11 41.5 4.3 2.6e-10 40.1 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|389848244|ref|YP_006350483.1| - 3.4e-06 27.1 1.4 1.4e-05 25.2 0.9 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389848244|ref|YP_006350483.1| - 4.2e-06 27.0 0.8 1.6e-05 25.1 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|389848244|ref|YP_006350483.1| - 4.5e-05 23.7 4.6 4.5e-05 23.7 3.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389848244|ref|YP_006350483.1| - 0.00018 21.2 6.6 0.0005 19.8 4.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389848244|ref|YP_006350483.1| - 0.00037 20.8 12.2 0.0032 17.8 0.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Prp19_bind PF06991.6 gi|389848244|ref|YP_006350483.1| - 0.0079 15.5 2.8 1.9 7.6 0.0 2.3 2 0 0 2 2 2 2 Splicing factor, Prp19-binding domain Fer4_16 PF13484.1 gi|389848244|ref|YP_006350483.1| - 0.023 15.4 6.2 0.36 11.6 0.5 2.8 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|389848244|ref|YP_006350483.1| - 0.033 13.7 7.5 0.59 9.7 0.3 2.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YtkA PF13115.1 gi|389848244|ref|YP_006350483.1| - 0.059 13.7 0.1 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 YtkA-like Fer4_2 PF12797.2 gi|389848244|ref|YP_006350483.1| - 0.07 13.0 1.0 0.07 13.0 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389848244|ref|YP_006350483.1| - 2.4 8.1 9.7 2.4 8.1 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|389848243|ref|YP_006350482.1| - 2.8e-121 405.2 7.7 4.9e-121 404.4 5.4 1.4 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|389848243|ref|YP_006350482.1| - 2e-39 134.3 0.4 3.4e-39 133.6 0.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|389848243|ref|YP_006350482.1| - 7e-08 32.5 8.7 8.6e-06 25.7 6.0 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389848243|ref|YP_006350482.1| - 6.5e-07 28.5 5.8 4.7e-05 22.4 3.8 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|389848243|ref|YP_006350482.1| - 0.00028 19.4 1.5 0.00028 19.4 1.1 2.1 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|389848243|ref|YP_006350482.1| - 0.0012 18.0 2.8 0.0039 16.3 0.4 2.4 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|389848243|ref|YP_006350482.1| - 0.0019 17.1 5.7 0.002 17.0 2.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|389848243|ref|YP_006350482.1| - 0.002 17.3 7.3 0.0049 16.0 5.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|389848243|ref|YP_006350482.1| - 0.0024 17.4 0.1 0.0051 16.3 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|389848243|ref|YP_006350482.1| - 0.0053 15.8 1.1 0.011 14.8 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|389848243|ref|YP_006350482.1| - 0.023 15.0 2.1 0.13 12.6 0.8 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|389848243|ref|YP_006350482.1| - 0.031 14.5 0.0 0.072 13.3 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|389848243|ref|YP_006350482.1| - 0.078 13.0 0.3 0.19 11.7 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrmB PF01978.14 gi|389848242|ref|YP_006350481.1| - 2e-07 30.6 0.0 2.6e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|389848242|ref|YP_006350481.1| - 7.3e-05 22.8 0.0 9.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389848242|ref|YP_006350481.1| - 0.0029 17.1 0.0 0.0037 16.8 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.9 gi|389848242|ref|YP_006350481.1| - 0.018 14.7 0.0 0.031 14.0 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|389848242|ref|YP_006350481.1| - 0.027 14.1 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|389848242|ref|YP_006350481.1| - 0.062 13.4 0.0 0.077 13.1 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|389848242|ref|YP_006350481.1| - 0.069 12.9 0.0 0.085 12.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3481 PF11980.3 gi|389848240|ref|YP_006350479.1| - 0.86 9.4 4.8 0.26 11.1 0.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) Glyco_tranf_2_3 PF13641.1 gi|389848239|ref|YP_006350478.1| - 2.5e-33 115.8 0.0 3.4e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|389848239|ref|YP_006350478.1| - 1.4e-23 83.6 1.1 2.3e-23 82.9 0.8 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|389848239|ref|YP_006350478.1| - 8.6e-12 45.0 0.0 1.4e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|389848239|ref|YP_006350478.1| - 0.0004 19.7 0.0 0.26 10.5 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 21 Acetyltransf_1 PF00583.19 gi|389848238|ref|YP_006350477.1| - 1.3e-14 53.9 0.0 2.1e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848238|ref|YP_006350477.1| - 1.3e-09 38.1 0.7 1.8e-09 37.6 0.5 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848238|ref|YP_006350477.1| - 2.1e-09 37.4 0.0 3.5e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389848238|ref|YP_006350477.1| - 5.6e-06 26.3 0.0 6.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848238|ref|YP_006350477.1| - 4.3e-05 23.3 0.0 6e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848238|ref|YP_006350477.1| - 0.00037 20.1 0.0 0.00067 19.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|389848238|ref|YP_006350477.1| - 0.053 13.4 0.0 0.095 12.5 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain BPD_transp_2 PF02653.11 gi|389848237|ref|YP_006350476.1| - 5.4e-31 107.5 43.4 5.4e-31 107.5 30.1 2.0 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF768 PF05589.6 gi|389848236|ref|YP_006350475.1| - 0.1 12.5 0.4 0.52 10.2 0.1 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF768) BPD_transp_2 PF02653.11 gi|389848235|ref|YP_006350474.1| - 3.3e-43 147.6 30.2 3.3e-43 147.6 20.9 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|389848234|ref|YP_006350473.1| - 8.9e-32 110.2 0.0 1.2e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848234|ref|YP_006350473.1| - 2.6e-13 50.6 1.5 1.2e-10 41.8 1.0 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|389848234|ref|YP_006350473.1| - 6.2e-11 41.7 0.0 1.3e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|389848234|ref|YP_006350473.1| - 1.4e-05 24.5 0.5 2.7e-05 23.5 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389848234|ref|YP_006350473.1| - 4.1e-05 23.9 0.0 5.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389848234|ref|YP_006350473.1| - 0.00055 19.2 0.2 0.081 12.1 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|389848234|ref|YP_006350473.1| - 0.0022 18.1 0.1 0.24 11.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|389848234|ref|YP_006350473.1| - 0.0094 15.4 0.4 1.5 8.2 0.2 2.4 1 1 0 2 2 2 1 AAA-like domain MMR_HSR1 PF01926.18 gi|389848234|ref|YP_006350473.1| - 0.033 14.1 0.0 0.062 13.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase MukB PF04310.7 gi|389848234|ref|YP_006350473.1| - 0.056 12.7 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_15 PF13175.1 gi|389848234|ref|YP_006350473.1| - 0.08 11.9 0.5 0.71 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|389848234|ref|YP_006350473.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|389848234|ref|YP_006350473.1| - 0.15 11.2 0.1 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|389848234|ref|YP_006350473.1| - 0.22 11.6 0.8 1.2 9.2 0.5 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|389848233|ref|YP_006350472.1| - 1.7e-30 106.1 0.0 2.7e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848233|ref|YP_006350472.1| - 1.1e-10 41.9 0.0 0.00025 21.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389848233|ref|YP_006350472.1| - 0.00058 19.3 0.1 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389848233|ref|YP_006350472.1| - 0.00062 19.0 1.5 0.0078 15.4 0.1 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|389848233|ref|YP_006350472.1| - 0.00088 19.6 0.0 0.0013 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389848233|ref|YP_006350472.1| - 0.00094 18.7 0.1 0.011 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|389848233|ref|YP_006350472.1| - 0.0093 16.1 0.2 0.3 11.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|389848233|ref|YP_006350472.1| - 0.046 13.1 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 MutS domain V SbcCD_C PF13558.1 gi|389848233|ref|YP_006350472.1| - 0.077 12.9 2.1 2.5 8.0 1.5 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|389848233|ref|YP_006350472.1| - 0.079 12.5 0.4 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|389848233|ref|YP_006350472.1| - 0.082 12.8 0.0 0.37 10.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|389848233|ref|YP_006350472.1| - 0.11 11.9 0.0 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain MukB PF04310.7 gi|389848233|ref|YP_006350472.1| - 0.12 11.7 0.1 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_16 PF13191.1 gi|389848233|ref|YP_006350472.1| - 0.13 12.2 0.1 0.7 9.8 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|389848233|ref|YP_006350472.1| - 0.14 10.9 0.2 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|389848233|ref|YP_006350472.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|389848233|ref|YP_006350472.1| - 0.16 11.1 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|389848233|ref|YP_006350472.1| - 0.26 11.5 0.9 9.8 6.4 0.3 2.4 2 1 0 2 2 2 0 AAA domain DUF4469 PF14734.1 gi|389848232|ref|YP_006350471.1| - 0.044 13.6 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4469) with IG-like fold DUF3244 PF11589.3 gi|389848232|ref|YP_006350471.1| - 0.074 12.7 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) LBP_BPI_CETP PF01273.20 gi|389848232|ref|YP_006350471.1| - 0.15 11.4 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 LBP / BPI / CETP family, N-terminal domain Peripla_BP_6 PF13458.1 gi|389848230|ref|YP_006350469.1| - 6.5e-26 91.4 5.2 1.6e-21 77.0 0.7 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|389848230|ref|YP_006350469.1| - 1.5e-18 66.6 1.6 4.5e-15 55.3 0.5 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|389848230|ref|YP_006350469.1| - 4.6e-05 22.3 0.7 9.1e-05 21.3 0.0 1.8 3 0 0 3 3 3 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|389848230|ref|YP_006350469.1| - 0.012 15.5 2.5 0.012 15.5 1.7 3.0 2 1 1 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence PRK PF00485.13 gi|389848229|ref|YP_006350468.1| - 1.5e-52 177.9 0.1 2e-52 177.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|389848229|ref|YP_006350468.1| - 1.8e-07 31.9 0.7 3.9e-07 30.8 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|389848229|ref|YP_006350468.1| - 3.6e-07 30.5 0.8 9.1e-07 29.2 0.5 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|389848229|ref|YP_006350468.1| - 0.00021 20.4 0.0 0.00046 19.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CoaE PF01121.15 gi|389848229|ref|YP_006350468.1| - 0.00033 20.0 2.3 0.031 13.6 0.0 2.5 3 0 0 3 3 3 2 Dephospho-CoA kinase ABC_tran PF00005.22 gi|389848229|ref|YP_006350468.1| - 0.00044 20.5 0.0 0.00067 19.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_28 PF13521.1 gi|389848229|ref|YP_006350468.1| - 0.0007 19.5 0.1 0.0014 18.5 0.0 1.5 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|389848229|ref|YP_006350468.1| - 0.0043 16.7 0.0 0.0089 15.6 0.0 1.6 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.1 gi|389848229|ref|YP_006350468.1| - 0.0045 17.1 0.0 0.0083 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|389848229|ref|YP_006350468.1| - 0.028 14.7 0.1 0.23 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|389848229|ref|YP_006350468.1| - 0.029 14.2 0.0 0.07 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|389848229|ref|YP_006350468.1| - 0.075 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_16 PF13191.1 gi|389848229|ref|YP_006350468.1| - 0.083 12.8 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|389848229|ref|YP_006350468.1| - 0.1 12.3 0.5 0.29 10.8 0.3 1.7 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|389848229|ref|YP_006350468.1| - 0.11 12.1 0.4 2.5 7.8 0.0 2.7 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2064 PF09837.4 gi|389848227|ref|YP_006350466.1| - 2.5e-06 27.1 0.0 4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|389848227|ref|YP_006350466.1| - 0.0016 17.4 0.0 0.67 8.8 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like UDG PF03167.14 gi|389848226|ref|YP_006350465.1| - 4.7e-25 87.8 0.0 5.4e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ParA PF10609.4 gi|389848224|ref|YP_006350463.1| - 5.2e-35 119.1 0.0 9.4e-35 118.3 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|389848224|ref|YP_006350463.1| - 1.1e-18 67.2 0.0 1.6e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|389848224|ref|YP_006350463.1| - 1.9e-11 43.7 0.3 3.6e-11 42.9 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|389848224|ref|YP_006350463.1| - 1e-09 38.5 0.0 1.9e-08 34.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|389848224|ref|YP_006350463.1| - 2.4e-08 33.3 0.0 3.3e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|389848224|ref|YP_006350463.1| - 0.00019 20.5 0.0 0.0003 19.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|389848224|ref|YP_006350463.1| - 0.00033 19.7 3.8 0.0007 18.7 0.8 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|389848224|ref|YP_006350463.1| - 0.00042 19.5 0.0 0.015 14.4 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|389848224|ref|YP_006350463.1| - 0.0024 17.3 0.0 0.0044 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|389848224|ref|YP_006350463.1| - 0.0068 16.0 0.0 2 7.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|389848224|ref|YP_006350463.1| - 0.084 12.5 0.0 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|389848224|ref|YP_006350463.1| - 1.4 8.7 5.2 20 5.0 0.1 2.9 3 1 0 3 3 3 0 Part of AAA domain Mob_synth_C PF06463.8 gi|389848223|ref|YP_006350462.1| - 3.2e-28 97.9 0.0 5e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|389848223|ref|YP_006350462.1| - 3.8e-25 88.9 0.0 6.9e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|389848223|ref|YP_006350462.1| - 1e-08 35.2 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|389848223|ref|YP_006350462.1| - 2.6e-08 34.1 0.0 5e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|389848223|ref|YP_006350462.1| - 0.044 13.4 0.7 9.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 Cytochrom_C PF00034.16 gi|389848223|ref|YP_006350462.1| - 0.084 13.7 0.0 5.7 7.8 0.0 2.7 2 0 0 2 2 2 0 Cytochrome c CARDB PF07705.6 gi|389848222|ref|YP_006350461.1| - 2.9e-10 40.0 18.2 0.0028 17.6 0.5 5.1 4 1 0 4 4 4 3 CARDB NPCBM_assoc PF10633.4 gi|389848222|ref|YP_006350461.1| - 1.9e-09 37.4 13.4 0.15 12.1 0.1 6.4 5 1 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|389848222|ref|YP_006350461.1| - 4.5e-06 26.6 19.6 0.076 13.0 2.6 4.9 5 0 0 5 5 5 4 Domain of unknown function DUF11 CBM_21 PF03370.8 gi|389848222|ref|YP_006350461.1| - 0.0012 18.8 0.5 1.6 8.7 0.0 3.5 3 1 0 3 3 3 2 Putative phosphatase regulatory subunit Transglut_C PF00927.17 gi|389848222|ref|YP_006350461.1| - 0.003 17.5 3.1 5.7 7.0 0.0 4.6 3 1 2 5 5 5 2 Transglutaminase family, C-terminal ig like domain MMPL PF03176.10 gi|389848221|ref|YP_006350460.1| - 1.5e-32 112.6 27.6 9.5e-19 67.2 6.2 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|389848221|ref|YP_006350460.1| - 6.5e-17 61.4 7.5 5.2e-10 38.9 0.7 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|389848221|ref|YP_006350460.1| - 7.2e-13 47.3 27.6 7e-09 34.1 4.9 2.7 2 1 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|389848221|ref|YP_006350460.1| - 5.5e-06 24.1 4.2 5.5e-06 24.1 2.9 2.1 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|389848221|ref|YP_006350460.1| - 0.00062 19.0 24.6 0.013 14.7 6.7 2.6 2 0 0 2 2 2 2 Protein export membrane protein zf-ribbon_3 PF13248.1 gi|389848220|ref|YP_006350459.1| - 3.8e-06 25.9 0.8 5e-06 25.5 0.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|389848220|ref|YP_006350459.1| - 1e-05 25.2 0.2 1.2e-05 25.0 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389848220|ref|YP_006350459.1| - 0.00068 19.0 1.0 0.00093 18.6 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain CpXC PF14353.1 gi|389848220|ref|YP_006350459.1| - 0.005 16.7 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 CpXC protein Sgf11 PF08209.6 gi|389848220|ref|YP_006350459.1| - 0.011 15.0 0.1 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) zf-RING_3 PF14369.1 gi|389848220|ref|YP_006350459.1| - 0.051 13.5 1.5 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-C2HC_2 PF13913.1 gi|389848220|ref|YP_006350459.1| - 0.056 13.1 0.2 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Nudix_N_2 PF14803.1 gi|389848220|ref|YP_006350459.1| - 0.1 12.3 1.2 6.3 6.5 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal TetR_N PF00440.18 gi|389848219|ref|YP_006350458.1| - 3.8e-10 39.2 0.2 5.9e-10 38.6 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|389848219|ref|YP_006350458.1| - 0.00024 21.0 1.8 0.00053 20.0 0.0 2.4 4 0 0 4 4 4 1 Bacterial transcriptional repressor DUF3139 PF11337.3 gi|389848219|ref|YP_006350458.1| - 0.0088 16.3 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3139) Thioredoxin PF00085.15 gi|389848218|ref|YP_006350457.1| - 2.3e-14 52.9 0.0 2.6e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389848218|ref|YP_006350457.1| - 2.1e-05 24.6 0.0 0.00023 21.3 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|389848218|ref|YP_006350457.1| - 0.0003 20.5 0.1 0.00045 19.9 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.1 gi|389848218|ref|YP_006350457.1| - 0.0085 15.5 0.0 0.019 14.4 0.0 1.5 1 1 0 1 1 1 1 F plasmid transfer operon protein DUF836 PF05768.9 gi|389848218|ref|YP_006350457.1| - 0.025 14.8 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) HyaE PF07449.6 gi|389848218|ref|YP_006350457.1| - 0.026 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Ribosomal_S13 PF00416.17 gi|389848217|ref|YP_006350456.1| - 5.8e-35 119.9 1.1 7e-35 119.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.1 gi|389848217|ref|YP_006350456.1| - 0.047 13.8 0.1 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.20 gi|389848216|ref|YP_006350455.1| - 8.3e-12 44.3 0.3 1.7e-11 43.3 0.0 1.7 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.1 gi|389848216|ref|YP_006350455.1| - 0.0056 16.2 0.0 0.0088 15.6 0.0 1.3 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|389848216|ref|YP_006350455.1| - 0.0087 16.4 0.6 0.088 13.1 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain DUF4185 PF13810.1 gi|389848216|ref|YP_006350455.1| - 0.048 12.5 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4185) NanE PF04131.9 gi|389848216|ref|YP_006350455.1| - 0.13 11.2 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribosomal_S11 PF00411.14 gi|389848215|ref|YP_006350454.1| - 4.1e-44 149.2 0.6 4.8e-44 149.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|389848214|ref|YP_006350453.1| - 1.6e-20 73.2 0.0 1e-19 70.7 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|389848214|ref|YP_006350453.1| - 6.4e-10 38.0 0.0 8.1e-10 37.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain CusF_Ec PF11604.3 gi|389848214|ref|YP_006350453.1| - 0.055 13.3 0.2 7.3 6.5 0.0 3.1 2 1 1 3 3 3 0 Copper binding periplasmic protein CusF DUF4198 PF10670.4 gi|389848214|ref|YP_006350453.1| - 0.076 13.0 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Ribosomal_L18e PF00828.14 gi|389848213|ref|YP_006350452.1| - 2.8e-14 53.6 0.2 3.3e-14 53.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|389848212|ref|YP_006350451.1| - 1.1e-20 74.0 0.0 1.4e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 CarboxypepD_reg PF13620.1 gi|389848212|ref|YP_006350451.1| - 0.053 13.5 0.2 0.16 12.0 0.2 1.7 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain Ribosomal_S9 PF00380.14 gi|389848211|ref|YP_006350450.1| - 1.6e-36 125.2 0.1 1.8e-36 125.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|389848210|ref|YP_006350449.1| - 1.8e-28 98.3 0.3 1.9e-28 98.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.17 gi|389848209|ref|YP_006350448.1| - 2.5e-18 65.5 0.1 2.9e-18 65.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|389848208|ref|YP_006350447.1| - 2.2e-74 250.1 0.6 3.4e-74 249.4 0.4 1.3 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|389848208|ref|YP_006350447.1| - 2.1e-38 131.2 0.3 4.8e-38 130.0 0.2 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|389848208|ref|YP_006350447.1| - 2.1e-05 24.9 0.1 6.1e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MAAL_C PF07476.6 gi|389848208|ref|YP_006350447.1| - 0.00014 20.8 0.1 0.00014 20.8 0.1 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|389848208|ref|YP_006350447.1| - 0.00076 19.4 0.2 0.0026 17.7 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like Ribosomal_S2 PF00318.15 gi|389848207|ref|YP_006350446.1| - 1.7e-37 128.7 0.0 8.2e-19 67.6 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Spc24 PF08286.6 gi|389848207|ref|YP_006350446.1| - 0.11 12.2 0.2 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 TRAP_alpha PF03896.11 gi|389848207|ref|YP_006350446.1| - 0.8 8.6 6.9 1.1 8.2 4.8 1.3 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Lactamase_B PF00753.22 gi|389848206|ref|YP_006350445.1| - 1.1e-17 64.3 7.4 2e-17 63.4 5.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|389848206|ref|YP_006350445.1| - 1.4e-16 60.7 0.0 2.8e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|389848206|ref|YP_006350445.1| - 0.00088 18.8 0.1 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MarB PF13999.1 gi|389848206|ref|YP_006350445.1| - 0.13 11.8 0.1 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 MarB protein Glyoxalase_3 PF13468.1 gi|389848205|ref|YP_006350444.1| - 8e-27 94.2 0.7 8.1e-26 90.9 0.4 1.9 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|389848205|ref|YP_006350444.1| - 0.00018 21.5 0.0 0.002 18.1 0.0 2.3 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|389848205|ref|YP_006350444.1| - 0.00093 19.7 0.2 0.55 10.8 0.0 3.1 2 1 0 3 3 3 1 Glyoxalase-like domain DUF2342 PF10103.4 gi|389848204|ref|YP_006350443.1| - 9e-83 278.0 0.9 1.9e-43 148.7 0.0 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|389848204|ref|YP_006350443.1| - 0.0019 18.2 1.0 0.0066 16.4 0.7 1.9 1 1 0 1 1 1 1 Peptidase MA superfamily AAA_12 PF13087.1 gi|662859582|ref|YP_006350441.2| - 2.1e-39 134.9 0.0 3.5e-39 134.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|662859582|ref|YP_006350441.2| - 3.2e-38 131.6 0.0 2.2e-20 73.2 0.1 2.6 1 1 1 2 2 2 2 AAA domain Dna2 PF08696.6 gi|662859582|ref|YP_006350441.2| - 3.6e-36 124.4 0.0 1.6e-35 122.2 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|662859582|ref|YP_006350441.2| - 1.1e-18 67.5 2.8 1.3e-17 64.0 0.6 2.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|662859582|ref|YP_006350441.2| - 7.8e-17 60.8 1.4 1.2e-13 50.5 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain PDDEXK_1 PF12705.2 gi|662859582|ref|YP_006350441.2| - 1.6e-12 47.3 0.0 9.8e-12 44.7 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|662859582|ref|YP_006350441.2| - 1.1e-08 34.8 0.0 0.013 15.0 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|662859582|ref|YP_006350441.2| - 2.8e-05 23.5 0.0 0.00013 21.4 0.0 2.0 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|662859582|ref|YP_006350441.2| - 7.9e-05 22.6 0.0 0.00045 20.1 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 UvrD_C_2 PF13538.1 gi|662859582|ref|YP_006350441.2| - 0.0001 22.3 0.0 0.00033 20.7 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_16 PF13191.1 gi|662859582|ref|YP_006350441.2| - 0.00044 20.2 0.6 0.0012 18.9 0.1 2.0 2 0 0 2 2 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|662859582|ref|YP_006350441.2| - 0.00052 19.0 0.0 0.0041 16.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|662859582|ref|YP_006350441.2| - 0.00088 19.1 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|662859582|ref|YP_006350441.2| - 0.0012 18.9 0.1 0.014 15.5 0.0 2.8 3 1 0 3 3 1 1 AAA domain AAA_25 PF13481.1 gi|662859582|ref|YP_006350441.2| - 0.0062 15.9 1.0 0.021 14.2 0.1 2.3 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|662859582|ref|YP_006350441.2| - 0.0083 15.3 0.0 0.033 13.4 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein Helicase_RecD PF05127.9 gi|662859582|ref|YP_006350441.2| - 0.0093 15.6 0.0 0.026 14.1 0.0 1.8 1 1 0 1 1 1 1 Helicase AAA PF00004.24 gi|662859582|ref|YP_006350441.2| - 0.028 14.6 0.4 0.085 13.0 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|662859582|ref|YP_006350441.2| - 0.047 13.0 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PIF1 PF05970.9 gi|662859582|ref|YP_006350441.2| - 0.072 12.0 0.0 5.1 5.9 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase MobB PF03205.9 gi|662859582|ref|YP_006350441.2| - 0.072 12.7 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|662859582|ref|YP_006350441.2| - 0.093 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|662859582|ref|YP_006350441.2| - 0.11 11.6 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2088 PF09861.4 gi|389848201|ref|YP_006350440.1| - 5e-38 130.1 0.0 8.5e-38 129.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|389848201|ref|YP_006350440.1| - 0.00092 18.7 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DEAD_assoc PF08494.6 gi|389848200|ref|YP_006350439.1| - 6.3e-52 176.0 1.5 2.4e-51 174.1 0.3 2.3 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|389848200|ref|YP_006350439.1| - 2e-32 112.0 0.0 1.5e-30 105.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|389848200|ref|YP_006350439.1| - 5.6e-17 61.3 0.2 1.8e-15 56.5 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|389848200|ref|YP_006350439.1| - 2.3e-09 37.3 0.0 6e-09 35.9 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|389848200|ref|YP_006350439.1| - 0.00021 21.4 0.1 0.0013 18.8 0.0 2.4 3 0 0 3 3 3 1 AAA domain SNF2_N PF00176.18 gi|389848200|ref|YP_006350439.1| - 0.14 10.8 0.0 0.53 9.0 0.0 2.0 2 1 0 2 2 2 0 SNF2 family N-terminal domain Lactamase_B_2 PF12706.2 gi|389848199|ref|YP_006350438.1| - 1.5e-18 67.0 0.2 2e-18 66.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|389848199|ref|YP_006350438.1| - 5.5e-13 49.0 4.9 5.5e-13 49.0 3.4 2.1 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily AA_kinase PF00696.23 gi|389848198|ref|YP_006350437.1| - 4.2e-35 121.4 6.4 4.6e-35 121.2 4.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family Lipase_GDSL_2 PF13472.1 gi|389848198|ref|YP_006350437.1| - 0.035 14.2 0.1 0.089 12.9 0.0 1.6 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family GHMP_kinases_N PF00288.21 gi|389848197|ref|YP_006350436.1| - 3.1e-17 62.3 0.3 9.4e-17 60.8 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|389848197|ref|YP_006350436.1| - 4.2e-14 52.5 0.9 2e-13 50.3 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|389848197|ref|YP_006350436.1| - 0.00041 19.5 0.1 0.00074 18.7 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Delta_lysin PF05372.6 gi|389848197|ref|YP_006350436.1| - 0.096 12.0 0.5 0.16 11.3 0.3 1.3 1 0 0 1 1 1 0 Delta lysin family DUF4366 PF14283.1 gi|389848196|ref|YP_006350435.1| - 0.035 13.5 0.1 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Peptidase_M42 PF05343.9 gi|389848195|ref|YP_006350434.1| - 3.6e-77 259.0 5.4 4.2e-77 258.7 3.7 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|389848195|ref|YP_006350434.1| - 1e-09 38.1 0.1 1.6e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|389848195|ref|YP_006350434.1| - 1.4e-07 30.3 0.2 0.00045 18.8 0.0 2.3 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Ribosomal_L11 PF00298.14 gi|389848194|ref|YP_006350433.1| - 4.1e-20 71.6 0.1 5.8e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|389848194|ref|YP_006350433.1| - 1.2e-19 69.4 0.1 2e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain F420_ligase PF01996.11 gi|389848194|ref|YP_006350433.1| - 0.11 11.5 0.1 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Ribosomal_L1 PF00687.16 gi|389848193|ref|YP_006350432.1| - 9.9e-43 146.0 0.0 1.2e-42 145.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|389848192|ref|YP_006350431.1| - 2.2e-22 78.8 0.0 4.3e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|389848192|ref|YP_006350431.1| - 8e-05 22.9 11.2 8e-05 22.9 7.8 2.2 2 1 0 2 2 2 1 60s Acidic ribosomal protein CobT PF06213.7 gi|389848192|ref|YP_006350431.1| - 0.061 12.4 11.3 0.11 11.6 7.8 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF3073 PF11273.3 gi|389848192|ref|YP_006350431.1| - 1.1 9.8 7.1 55 4.4 4.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) DUF2457 PF10446.4 gi|389848192|ref|YP_006350431.1| - 1.9 7.1 14.5 2.8 6.5 10.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Sigma70_ner PF04546.8 gi|389848192|ref|YP_006350431.1| - 2.7 7.5 13.7 1.7 8.2 8.0 1.8 2 1 0 2 2 2 0 Sigma-70, non-essential region Ribosomal_60s PF00428.14 gi|389848191|ref|YP_006350430.1| - 8.8e-14 51.6 38.0 2.7e-13 50.1 26.4 1.7 1 1 0 1 1 1 1 60s Acidic ribosomal protein RR_TM4-6 PF06459.7 gi|389848191|ref|YP_006350430.1| - 0.45 10.3 6.8 0.55 10.0 4.7 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 CENP-T PF15511.1 gi|389848191|ref|YP_006350430.1| - 2.5 7.2 8.9 2.9 7.0 6.2 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T NOA36 PF06524.7 gi|389848191|ref|YP_006350430.1| - 2.8 7.1 5.0 3.2 6.9 3.5 1.1 1 0 0 1 1 1 0 NOA36 protein DUF2457 PF10446.4 gi|389848191|ref|YP_006350430.1| - 5.4 5.6 7.8 5.3 5.6 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) TctA PF01970.11 gi|389848190|ref|YP_006350429.1| - 3.1e-51 174.0 43.1 3.8e-51 173.8 29.8 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DUF1610 PF07754.6 gi|389848189|ref|YP_006350428.1| - 1.5e-10 40.9 13.8 3.6e-05 23.7 0.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|389848189|ref|YP_006350428.1| - 0.0033 17.2 12.8 0.7 9.7 8.9 2.3 1 1 0 1 1 1 1 Double zinc ribbon C1_3 PF07649.7 gi|389848189|ref|YP_006350428.1| - 0.0037 17.2 9.8 0.019 14.9 1.2 2.2 2 0 0 2 2 2 1 C1-like domain zf-Mss51 PF13824.1 gi|389848189|ref|YP_006350428.1| - 0.0088 15.8 13.9 0.64 9.9 1.7 3.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|389848189|ref|YP_006350428.1| - 0.017 14.7 11.4 0.094 12.3 4.8 2.4 1 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF2039 PF10217.4 gi|389848189|ref|YP_006350428.1| - 0.028 14.4 7.0 0.045 13.7 4.9 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) PolC_DP2 PF03833.8 gi|389848189|ref|YP_006350428.1| - 0.031 11.9 6.0 0.031 11.9 4.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|389848189|ref|YP_006350428.1| - 0.034 13.6 15.7 0.56 9.7 3.1 4.0 3 1 1 4 4 4 0 zinc-ribbon domain DUF2296 PF10058.4 gi|389848189|ref|YP_006350428.1| - 0.034 13.8 7.6 4 7.2 0.0 3.6 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) FYVE_2 PF02318.11 gi|389848189|ref|YP_006350428.1| - 0.058 13.2 7.6 0.063 13.1 5.2 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger Sgf11 PF08209.6 gi|389848189|ref|YP_006350428.1| - 0.06 12.6 0.5 0.06 12.6 0.3 3.8 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-UBP PF02148.14 gi|389848189|ref|YP_006350428.1| - 0.064 13.3 1.4 0.064 13.3 1.0 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_Tnp_IS91 PF14319.1 gi|389848189|ref|YP_006350428.1| - 0.09 12.2 10.1 0.11 12.0 7.0 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.14 gi|389848189|ref|YP_006350428.1| - 0.13 12.1 8.3 0.3 10.9 1.7 2.4 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-C3HC4_3 PF13920.1 gi|389848189|ref|YP_006350428.1| - 0.14 11.8 11.9 0.066 12.8 2.1 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2 PF00096.21 gi|389848189|ref|YP_006350428.1| - 0.2 12.0 17.2 2.9 8.4 0.3 4.1 3 1 0 3 3 3 0 Zinc finger, C2H2 type zf-HIT PF04438.11 gi|389848189|ref|YP_006350428.1| - 0.24 11.0 14.3 3.6 7.3 3.1 2.8 1 1 1 2 2 2 0 HIT zinc finger C1_1 PF00130.17 gi|389848189|ref|YP_006350428.1| - 0.25 11.0 11.2 0.2 11.3 0.8 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L34e PF01199.13 gi|389848189|ref|YP_006350428.1| - 0.27 11.4 3.8 6.2 7.1 0.1 2.3 1 1 1 2 2 2 0 Ribosomal protein L34e Zn-ribbon_8 PF09723.5 gi|389848189|ref|YP_006350428.1| - 0.3 11.0 17.4 0.36 10.8 8.4 2.9 1 1 2 3 3 3 0 Zinc ribbon domain zf-RING_5 PF14634.1 gi|389848189|ref|YP_006350428.1| - 0.39 10.4 11.7 1.6 8.5 1.1 2.3 2 0 0 2 2 2 0 zinc-RING finger domain zinc-ribbons_6 PF07191.7 gi|389848189|ref|YP_006350428.1| - 0.44 10.3 11.7 2.1 8.2 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|389848189|ref|YP_006350428.1| - 0.46 10.3 0.2 0.46 10.3 0.2 3.4 2 1 1 3 3 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|389848189|ref|YP_006350428.1| - 0.48 9.6 14.4 5.7 6.2 2.7 3.8 2 1 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.1 gi|389848189|ref|YP_006350428.1| - 0.53 10.1 14.9 8.1 6.3 0.1 3.5 2 1 1 3 3 3 0 YhfH-like protein zf-H2C2_2 PF13465.1 gi|389848189|ref|YP_006350428.1| - 0.56 10.6 16.6 2.9 8.3 0.5 4.0 2 1 2 4 4 4 0 Zinc-finger double domain NMDAR2_C PF10565.4 gi|389848189|ref|YP_006350428.1| - 0.59 8.7 8.5 0.63 8.6 5.9 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus NMD3 PF04981.8 gi|389848189|ref|YP_006350428.1| - 0.75 8.8 9.0 0.85 8.6 6.2 1.0 1 0 0 1 1 1 0 NMD3 family Zn_Tnp_IS1595 PF12760.2 gi|389848189|ref|YP_006350428.1| - 1 9.2 18.6 72 3.3 0.3 3.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|389848189|ref|YP_006350428.1| - 1.3 8.4 14.7 6.2 6.2 0.0 3.6 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding RNHCP PF12647.2 gi|389848189|ref|YP_006350428.1| - 1.4 8.8 11.6 2.4 8.0 4.0 2.2 1 1 1 2 2 2 0 RNHCP domain SprT-like PF10263.4 gi|389848189|ref|YP_006350428.1| - 1.5 8.4 7.5 5.1 6.7 5.2 1.7 1 1 0 1 1 1 0 SprT-like family IBR PF01485.16 gi|389848189|ref|YP_006350428.1| - 1.9 8.4 12.7 14 5.6 8.8 2.2 1 1 0 1 1 1 0 IBR domain DUF1272 PF06906.6 gi|389848189|ref|YP_006350428.1| - 1.9 8.3 10.8 8.3 6.3 7.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-UBR PF02207.15 gi|389848189|ref|YP_006350428.1| - 2.3 8.0 12.2 8.9 6.1 2.3 2.7 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) HypA PF01155.14 gi|389848189|ref|YP_006350428.1| - 2.9 7.6 11.5 57 3.4 8.0 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|389848189|ref|YP_006350428.1| - 3.5 7.5 10.7 0.68 9.7 0.8 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|389848189|ref|YP_006350428.1| - 3.8 7.2 10.5 10 5.8 0.0 3.7 3 1 1 4 4 4 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|389848189|ref|YP_006350428.1| - 3.8 7.1 14.5 6.5 6.4 0.1 3.8 3 1 1 4 4 4 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|389848189|ref|YP_006350428.1| - 4 7.2 13.3 5.3 6.8 2.1 3.6 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.11 gi|389848189|ref|YP_006350428.1| - 5.6 6.7 9.4 2.3 8.0 0.8 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-MYND PF01753.13 gi|389848189|ref|YP_006350428.1| - 5.7 6.9 11.3 11 6.0 1.8 2.5 1 1 1 2 2 2 0 MYND finger UPF0547 PF10571.4 gi|389848189|ref|YP_006350428.1| - 6.3 6.5 18.0 0.73 9.5 7.0 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|389848189|ref|YP_006350428.1| - 6.7 6.4 14.7 5.6 6.7 0.1 3.8 3 1 1 4 4 4 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|389848189|ref|YP_006350428.1| - 6.9 6.7 15.4 3 7.8 0.1 3.8 3 1 1 4 4 4 0 C2H2-type zinc finger CpXC PF14353.1 gi|389848189|ref|YP_006350428.1| - 6.9 6.6 12.9 4.3 7.3 1.3 3.3 1 1 3 4 4 4 0 CpXC protein zf-4CXXC_R1 PF10497.4 gi|389848189|ref|YP_006350428.1| - 7.6 6.7 10.6 14 5.8 7.4 1.7 1 1 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Ribosomal_L32p PF01783.18 gi|389848189|ref|YP_006350428.1| - 7.7 6.7 7.3 6.5e+02 0.6 5.0 2.9 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-C2H2_4 PF13894.1 gi|389848189|ref|YP_006350428.1| - 8.6 6.9 13.8 20 5.7 0.2 3.9 3 1 0 3 3 3 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|389848189|ref|YP_006350428.1| - 8.7 6.0 16.5 11 5.7 0.5 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|389848189|ref|YP_006350428.1| - 9.1 5.7 10.4 4.2 6.8 0.0 3.3 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain DUF2387 PF09526.5 gi|389848189|ref|YP_006350428.1| - 9.4 6.2 13.1 6.9 6.6 0.3 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) EF1_GNE PF00736.14 gi|389848188|ref|YP_006350427.1| - 1.9e-21 75.5 0.2 2e-21 75.4 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Gly-zipper_OmpA PF13436.1 gi|389848187|ref|YP_006350426.1| - 0.021 14.5 0.1 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Na_H_antiport_1 PF06965.7 gi|389848187|ref|YP_006350426.1| - 0.027 13.2 0.5 0.031 13.0 0.3 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter 1 DUF883 PF05957.8 gi|389848187|ref|YP_006350426.1| - 0.14 12.6 1.9 0.66 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2453 PF10507.4 gi|389848187|ref|YP_006350426.1| - 0.26 11.1 4.5 3.7 7.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2453) DUF543 PF04418.7 gi|389848187|ref|YP_006350426.1| - 0.33 10.9 5.8 2.9 7.8 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF543) DUF2407_C PF13373.1 gi|389848187|ref|YP_006350426.1| - 0.42 10.5 6.0 9.2 6.1 4.4 2.0 1 1 0 1 1 1 0 DUF2407 C-terminal domain Romo1 PF10247.4 gi|389848187|ref|YP_006350426.1| - 0.78 9.9 11.9 0.5 10.5 1.8 2.2 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 FTR1 PF03239.9 gi|389848187|ref|YP_006350426.1| - 3.5 6.4 5.9 4.4 6.1 4.1 1.5 1 1 0 1 1 1 0 Iron permease FTR1 family Cys_Met_Meta_PP PF01053.15 gi|389848186|ref|YP_006350425.1| - 2.4e-155 516.6 0.0 2.7e-155 516.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|389848186|ref|YP_006350425.1| - 3.7e-06 25.9 0.0 6.4e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|389848186|ref|YP_006350425.1| - 4.4e-05 21.9 0.0 6.2e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.16 gi|389848186|ref|YP_006350425.1| - 0.00051 19.1 0.0 0.0007 18.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|389848186|ref|YP_006350425.1| - 0.0015 17.6 0.2 0.0046 16.0 0.1 1.7 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Ribosomal_L21e PF01157.13 gi|662859581|ref|YP_006350424.2| - 2.2e-30 104.3 0.1 2.4e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|389848184|ref|YP_006350423.1| - 3.6e-17 62.4 1.7 4.2e-17 62.2 1.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_N PF14842.1 gi|389848184|ref|YP_006350423.1| - 0.0057 16.7 1.8 0.015 15.4 0.1 2.3 2 1 0 2 2 2 1 FliG N-terminal domain DUF1128 PF06569.6 gi|389848184|ref|YP_006350423.1| - 0.02 14.6 0.7 0.47 10.1 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1128) APH PF01636.18 gi|389848184|ref|YP_006350423.1| - 0.06 13.0 0.6 0.07 12.8 0.4 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family Prp19_bind PF06991.6 gi|389848184|ref|YP_006350423.1| - 0.2 10.8 4.5 0.21 10.8 3.2 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain DUF3734 PF12536.3 gi|389848184|ref|YP_006350423.1| - 0.27 11.3 1.7 0.87 9.7 0.6 1.9 1 1 1 2 2 2 0 Patatin phospholipase Gluconate_2-dh3 PF13618.1 gi|389848184|ref|YP_006350423.1| - 0.38 10.8 2.5 1.9 8.6 1.7 2.1 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 DUF655 PF04919.7 gi|389848183|ref|YP_006350422.1| - 1.3e-62 210.7 0.4 1.5e-62 210.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|389848183|ref|YP_006350422.1| - 1.3e-08 34.6 0.0 4.2e-08 33.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|389848183|ref|YP_006350422.1| - 1.2e-05 25.2 0.0 0.00013 21.9 0.0 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|389848183|ref|YP_006350422.1| - 3.2e-05 24.0 0.7 0.02 15.0 0.0 2.4 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|389848183|ref|YP_006350422.1| - 0.0012 18.4 0.0 0.077 12.7 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif FKBP_C PF00254.23 gi|389848183|ref|YP_006350422.1| - 0.013 15.5 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 FKBP-type peptidyl-prolyl cis-trans isomerase HHH_8 PF14716.1 gi|389848183|ref|YP_006350422.1| - 0.058 13.5 0.0 0.29 11.3 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.15 gi|389848182|ref|YP_006350421.1| - 5.1e-49 166.6 0.0 5.8e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|389848182|ref|YP_006350421.1| - 4.5e-08 33.1 0.0 7.4e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389848182|ref|YP_006350421.1| - 0.00065 20.2 0.0 0.0018 18.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|389848182|ref|YP_006350421.1| - 0.018 14.4 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|389848182|ref|YP_006350421.1| - 0.022 15.0 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389848182|ref|YP_006350421.1| - 0.057 13.9 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|389848182|ref|YP_006350421.1| - 0.093 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) Spermine_synth PF01564.12 gi|389848182|ref|YP_006350421.1| - 0.16 10.8 0.1 0.29 10.0 0.0 1.4 1 0 0 1 1 1 0 Spermine/spermidine synthase MS_channel PF00924.13 gi|389848181|ref|YP_006350420.1| - 5.8e-47 159.6 0.1 7.8e-47 159.2 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2301 PF10063.4 gi|389848181|ref|YP_006350420.1| - 0.72 10.0 3.6 0.52 10.5 0.1 2.1 1 1 0 2 2 2 0 Uncharacterized integral membrane protein (DUF2301) Methyltransf_26 PF13659.1 gi|389848180|ref|YP_006350419.1| - 1.8e-19 69.8 0.1 2.6e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389848180|ref|YP_006350419.1| - 3.8e-16 58.9 0.0 4.9e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|389848180|ref|YP_006350419.1| - 1.9e-11 44.5 0.0 2.9e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389848180|ref|YP_006350419.1| - 6.6e-11 42.5 0.0 2.6e-08 34.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389848180|ref|YP_006350419.1| - 7.9e-09 35.2 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389848180|ref|YP_006350419.1| - 2.9e-08 34.1 0.0 2.1e-06 28.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389848180|ref|YP_006350419.1| - 4.9e-07 29.6 0.0 7e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|389848180|ref|YP_006350419.1| - 2e-05 23.8 0.0 0.0084 15.2 0.0 2.1 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|389848180|ref|YP_006350419.1| - 3.9e-05 23.9 0.0 0.0001 22.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|389848180|ref|YP_006350419.1| - 0.0045 16.1 0.1 0.012 14.7 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|389848180|ref|YP_006350419.1| - 0.0061 16.1 0.0 0.0099 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.8 gi|389848180|ref|YP_006350419.1| - 0.013 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) RrnaAD PF00398.15 gi|389848180|ref|YP_006350419.1| - 0.015 14.3 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|389848180|ref|YP_006350419.1| - 0.021 14.4 0.0 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|389848180|ref|YP_006350419.1| - 0.025 13.9 0.0 0.033 13.5 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF1269 PF06897.7 gi|389848180|ref|YP_006350419.1| - 0.028 14.4 0.1 0.22 11.5 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1269) Methyltransf_32 PF13679.1 gi|389848180|ref|YP_006350419.1| - 0.032 13.9 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|389848180|ref|YP_006350419.1| - 0.054 14.3 0.0 0.088 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|389848180|ref|YP_006350419.1| - 0.075 12.0 0.0 0.28 10.2 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|389848180|ref|YP_006350419.1| - 0.13 11.3 0.0 1.4 7.9 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase DUF2431 PF10354.4 gi|389848180|ref|YP_006350419.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Meth_synt_1 PF08267.7 gi|389848179|ref|YP_006350418.1| - 1.8e-25 89.8 0.0 1.2e-22 80.5 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|389848179|ref|YP_006350418.1| - 2.4e-14 53.0 0.0 2.8e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|389848178|ref|YP_006350417.1| - 3.1e-80 269.5 0.0 3.6e-80 269.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|389848178|ref|YP_006350417.1| - 3.5e-21 75.7 0.0 1.1e-19 70.8 0.0 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|389848178|ref|YP_006350417.1| - 5.1e-06 25.6 0.1 8.7e-06 24.8 0.0 1.4 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) SnoaL PF07366.7 gi|389848177|ref|YP_006350416.1| - 6.1e-32 109.8 0.3 7.6e-32 109.5 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|389848177|ref|YP_006350416.1| - 5.5e-18 65.2 2.8 6.9e-18 64.9 1.9 1.1 1 0 0 1 1 1 1 SnoaL-like domain PHZA_PHZB PF03284.8 gi|389848177|ref|YP_006350416.1| - 0.0001 21.4 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis protein A/B NDK PF00334.14 gi|389848176|ref|YP_006350415.1| - 2.6e-56 189.1 0.0 3e-56 188.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|389848175|ref|YP_006350414.1| - 3.7e-24 84.3 0.0 3.9e-24 84.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.13 gi|389848174|ref|YP_006350413.1| - 2.1e-29 101.0 0.7 2.4e-29 100.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|389848173|ref|YP_006350412.1| - 9.1e-25 86.0 0.0 1.1e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|389848173|ref|YP_006350412.1| - 0.0012 18.5 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.7 gi|389848173|ref|YP_006350412.1| - 0.0085 16.1 2.3 0.15 12.1 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1269) eRF1_3 PF03465.10 gi|389848173|ref|YP_006350412.1| - 0.13 12.5 0.1 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 3 GNAT_acetyltr_2 PF13718.1 gi|389848172|ref|YP_006350411.1| - 2e-50 170.8 0.0 1.3e-49 168.1 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|389848172|ref|YP_006350411.1| - 1.9e-47 161.1 0.0 3.2e-47 160.4 0.0 1.4 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|389848172|ref|YP_006350411.1| - 3.6e-23 81.0 0.0 2.7e-22 78.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|389848172|ref|YP_006350411.1| - 1.3e-14 54.1 0.0 2.9e-12 46.5 0.0 3.0 3 0 0 3 3 3 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|389848172|ref|YP_006350411.1| - 1.3e-07 31.6 0.0 2.9e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.1 gi|389848172|ref|YP_006350411.1| - 8.6e-07 28.7 1.6 2.1e-06 27.4 1.1 1.7 1 0 0 1 1 1 1 AAA domain Acetyltransf_10 PF13673.1 gi|389848172|ref|YP_006350411.1| - 0.0085 16.2 0.0 0.45 10.6 0.0 2.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848172|ref|YP_006350411.1| - 0.018 14.9 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DEAD PF00270.24 gi|389848172|ref|YP_006350411.1| - 0.24 10.9 0.0 0.4 10.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase Acetyltransf_4 PF13420.1 gi|389848170|ref|YP_006350409.1| - 6e-16 58.7 0.0 8.7e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389848170|ref|YP_006350409.1| - 1.1e-15 57.3 0.0 2.2e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848170|ref|YP_006350409.1| - 1.5e-11 44.4 0.0 2.2e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848170|ref|YP_006350409.1| - 9.5e-08 32.1 0.0 2.3e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389848170|ref|YP_006350409.1| - 1.3e-07 31.8 0.1 2.8e-07 30.7 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389848170|ref|YP_006350409.1| - 7.5e-05 22.5 0.0 0.00022 21.0 0.0 1.8 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|389848170|ref|YP_006350409.1| - 0.0014 18.4 0.0 0.0024 17.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389848170|ref|YP_006350409.1| - 0.0032 17.3 0.1 0.0073 16.1 0.0 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|389848170|ref|YP_006350409.1| - 0.035 14.0 0.1 0.06 13.2 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Fe_dep_repress PF01325.14 gi|389848170|ref|YP_006350409.1| - 0.041 13.8 0.0 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|389848170|ref|YP_006350409.1| - 0.06 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|389848170|ref|YP_006350409.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain FR47 PF08445.5 gi|389848170|ref|YP_006350409.1| - 0.13 11.9 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein FAD_binding_3 PF01494.14 gi|389848167|ref|YP_006350406.1| - 1.9e-10 40.3 2.2 0.00019 20.6 0.0 2.6 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|389848167|ref|YP_006350406.1| - 4.9e-09 35.5 6.3 1.7e-05 23.9 0.3 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|389848167|ref|YP_006350406.1| - 4.7e-07 29.2 0.6 7.3e-07 28.6 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389848167|ref|YP_006350406.1| - 5.8e-05 23.0 0.1 0.00033 20.6 0.1 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389848167|ref|YP_006350406.1| - 0.00011 22.1 0.5 0.00054 19.9 0.3 2.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|389848167|ref|YP_006350406.1| - 0.00022 20.4 0.1 0.00045 19.3 0.1 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|389848167|ref|YP_006350406.1| - 0.00061 18.3 2.3 0.0017 16.8 0.9 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|389848167|ref|YP_006350406.1| - 0.003 16.4 6.6 0.0035 16.2 2.3 2.1 1 1 0 2 2 2 1 FAD binding domain Fer4_7 PF12838.2 gi|389848167|ref|YP_006350406.1| - 0.022 15.1 1.7 0.042 14.2 1.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|389848167|ref|YP_006350406.1| - 0.027 14.5 0.0 0.06 13.4 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389848167|ref|YP_006350406.1| - 0.041 14.2 4.6 2.5 8.5 0.9 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|389848167|ref|YP_006350406.1| - 0.076 11.8 6.1 0.12 11.2 2.2 2.3 3 0 0 3 3 3 0 Glucose inhibited division protein A DUF1905 PF08922.6 gi|389848167|ref|YP_006350406.1| - 0.1 12.2 0.0 0.32 10.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Fer4_10 PF13237.1 gi|389848167|ref|YP_006350406.1| - 0.18 11.6 1.1 0.33 10.7 0.8 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389848167|ref|YP_006350406.1| - 5.7 6.9 6.5 0.5 10.3 0.5 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_alpha PF00766.14 gi|389848166|ref|YP_006350405.1| - 1.6e-24 85.3 1.8 1.8e-24 85.1 0.4 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|389848166|ref|YP_006350405.1| - 2e-17 63.3 0.0 9.6e-17 61.1 0.0 2.1 2 1 0 2 2 2 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|662859580|ref|YP_006350404.2| - 8.2e-31 106.9 0.0 1.2e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_7 PF12838.2 gi|389848164|ref|YP_006350403.1| - 6.2e-12 45.7 22.9 2.1e-07 31.2 5.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389848164|ref|YP_006350403.1| - 1e-11 43.9 12.4 6.2e-08 31.9 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389848164|ref|YP_006350403.1| - 1.1e-09 38.4 4.8 1.6e-09 37.8 3.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389848164|ref|YP_006350403.1| - 1.8e-08 33.8 13.9 1.7e-06 27.6 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|389848164|ref|YP_006350403.1| - 6e-07 29.1 18.4 0.00018 21.2 5.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|389848164|ref|YP_006350403.1| - 9.9e-07 28.5 9.1 3e-06 26.9 6.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|389848164|ref|YP_006350403.1| - 1.2e-06 28.4 4.7 2.3e-05 24.3 4.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389848164|ref|YP_006350403.1| - 3.3e-06 26.6 9.8 0.00072 19.3 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|389848164|ref|YP_006350403.1| - 4.1e-06 27.0 0.6 0.038 14.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389848164|ref|YP_006350403.1| - 4.6e-06 27.2 4.6 9.7e-05 23.0 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|389848164|ref|YP_006350403.1| - 6.2e-05 23.0 9.1 0.00045 20.3 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|389848164|ref|YP_006350403.1| - 0.00071 19.9 6.9 0.0012 19.2 1.1 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|389848164|ref|YP_006350403.1| - 0.0028 18.1 12.7 0.0031 17.9 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|389848164|ref|YP_006350403.1| - 0.019 15.3 13.7 0.16 12.4 9.5 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|389848164|ref|YP_006350403.1| - 1.4 9.5 17.5 4.4 7.9 4.0 2.7 2 1 1 3 3 2 0 4Fe-4S single cluster domain DUF456 PF04306.8 gi|389848163|ref|YP_006350402.1| - 3.6e-29 101.6 19.6 3.6e-29 101.6 13.6 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF456) UbiA PF01040.13 gi|389848163|ref|YP_006350402.1| - 0.036 13.2 24.7 0.049 12.8 17.1 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF3323 PF11796.3 gi|389848163|ref|YP_006350402.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) DUF4064 PF13273.1 gi|389848163|ref|YP_006350402.1| - 5.9 7.0 13.9 0.68 10.0 0.4 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) Cyclase PF04199.8 gi|389848162|ref|YP_006350401.1| - 1.6e-24 86.5 0.1 2.4e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase tRNA-synt_1c PF00749.16 gi|389848161|ref|YP_006350400.1| - 5.8e-57 192.7 0.0 7.8e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|389848161|ref|YP_006350400.1| - 1.9e-17 63.5 0.0 6.8e-17 61.6 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.12 gi|389848160|ref|YP_006350399.1| - 3.3e-59 199.8 0.7 4.3e-59 199.4 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|389848159|ref|YP_006350398.1| - 8.6e-13 48.3 2.8 2.1e-12 47.0 1.9 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389848159|ref|YP_006350398.1| - 2.8e-07 30.2 1.2 2.1e-06 27.4 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|389848159|ref|YP_006350398.1| - 0.00087 19.0 2.6 0.0011 18.7 0.4 2.3 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase DUF1413 PF07205.6 gi|389848159|ref|YP_006350398.1| - 0.071 12.6 0.0 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1413) LSM PF01423.17 gi|389848158|ref|YP_006350397.1| - 1.3e-14 53.4 0.0 1.6e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|389848158|ref|YP_006350397.1| - 2.5e-06 27.3 0.0 3.4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|389848157|ref|YP_006350396.1| - 7.2e-26 89.7 14.2 7.8e-26 89.6 9.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|389848157|ref|YP_006350396.1| - 0.00098 18.8 2.4 0.0012 18.5 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|389848157|ref|YP_006350396.1| - 0.015 14.4 4.4 0.043 13.0 2.9 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|389848157|ref|YP_006350396.1| - 0.047 13.4 1.9 0.055 13.2 1.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-RanBP PF00641.13 gi|389848157|ref|YP_006350396.1| - 0.084 11.9 3.2 1.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.14 gi|389848157|ref|YP_006350396.1| - 0.14 11.8 2.1 0.16 11.6 1.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|389848157|ref|YP_006350396.1| - 0.15 11.6 5.7 0.62 9.6 3.8 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|389848157|ref|YP_006350396.1| - 0.21 11.1 3.5 0.23 10.9 2.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L32p PF01783.18 gi|389848157|ref|YP_006350396.1| - 0.34 11.1 8.9 0.49 10.6 5.9 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family FYVE_2 PF02318.11 gi|389848157|ref|YP_006350396.1| - 0.34 10.8 4.6 0.4 10.6 3.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Baculo_ME53 PF06061.6 gi|389848157|ref|YP_006350396.1| - 0.63 8.9 4.4 0.64 8.9 3.1 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 Cas_CXXC_CXXC PF09706.5 gi|389848157|ref|YP_006350396.1| - 0.63 10.2 3.7 0.74 10.0 2.5 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_CXXC_CXXC) OrfB_Zn_ribbon PF07282.6 gi|389848157|ref|YP_006350396.1| - 1.1 8.9 7.6 1.9 8.1 5.2 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-piccolo PF05715.8 gi|389848157|ref|YP_006350396.1| - 1.3 9.1 4.5 4.7 7.3 3.1 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger RNA_POL_M_15KD PF02150.11 gi|389848157|ref|YP_006350396.1| - 1.9 8.2 6.0 4.1 7.1 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|389848157|ref|YP_006350396.1| - 2 8.0 8.5 6.1 6.4 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-HIT PF04438.11 gi|389848157|ref|YP_006350396.1| - 2.3 7.9 7.6 7.7 6.2 0.7 2.1 2 0 0 2 2 2 0 HIT zinc finger TFIIS_C PF01096.13 gi|389848157|ref|YP_006350396.1| - 4.7 6.9 6.4 4.5 6.9 0.4 2.6 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) GATase_7 PF13537.1 gi|389848156|ref|YP_006350395.1| - 5.7e-23 80.9 0.0 1.1e-22 80.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|389848156|ref|YP_006350395.1| - 2.4e-22 79.3 0.0 5e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|389848156|ref|YP_006350395.1| - 4.9e-22 78.1 0.0 3.8e-16 58.7 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|389848156|ref|YP_006350395.1| - 1e-10 41.4 0.1 3.3e-10 39.7 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|389848156|ref|YP_006350395.1| - 3e-05 22.8 0.0 4.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF420 PF04238.7 gi|389848155|ref|YP_006350394.1| - 1.6e-37 128.3 10.4 1.6e-37 128.3 7.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|389848155|ref|YP_006350394.1| - 0.00024 21.1 2.6 0.00024 21.1 1.8 2.8 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|389848155|ref|YP_006350394.1| - 0.015 15.4 1.9 0.015 15.4 1.3 2.3 3 1 0 3 3 3 0 Protein of unknown function (DUF1240) DUF4149 PF13664.1 gi|389848155|ref|YP_006350394.1| - 0.035 14.1 12.5 0.41 10.7 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) Cytochrom_B561 PF03188.11 gi|389848155|ref|YP_006350394.1| - 9 6.1 10.0 0.24 11.2 0.8 2.5 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 HTH_3 PF01381.17 gi|389848154|ref|YP_006350393.1| - 9.4e-05 22.1 0.3 0.00014 21.6 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.1 gi|389848154|ref|YP_006350393.1| - 0.00015 21.3 2.2 0.0003 20.3 0.5 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|389848154|ref|YP_006350393.1| - 0.0015 18.6 1.8 0.0015 18.6 1.3 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|389848154|ref|YP_006350393.1| - 0.0031 17.5 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|389848154|ref|YP_006350393.1| - 0.036 13.8 0.9 0.13 12.1 0.6 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|389848154|ref|YP_006350393.1| - 0.088 12.7 0.4 0.16 11.9 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain tRNA_SAD PF07973.9 gi|389848153|ref|YP_006350392.1| - 3.1e-12 46.1 0.2 7.4e-12 44.9 0.1 1.7 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|389848153|ref|YP_006350392.1| - 1.3e-11 43.5 0.0 1.9e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|389848153|ref|YP_006350392.1| - 3.5e-07 29.8 1.7 9.7e-07 28.4 1.2 1.8 1 0 0 1 1 1 1 DHHA1 domain DegS PF05384.6 gi|389848153|ref|YP_006350392.1| - 0.085 12.0 0.1 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Sensor protein DegS Acyl-CoA_dh_1 PF00441.19 gi|389848152|ref|YP_006350391.1| - 3.7e-52 176.4 1.1 6.3e-52 175.6 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|389848152|ref|YP_006350391.1| - 9.4e-35 119.6 0.8 2.5e-34 118.2 0.6 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|389848152|ref|YP_006350391.1| - 7.2e-24 84.5 2.3 1.4e-23 83.6 1.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|389848152|ref|YP_006350391.1| - 1.5e-17 62.8 0.0 3.7e-17 61.5 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_ox_N PF14749.1 gi|389848152|ref|YP_006350391.1| - 0.058 13.6 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 Acyl-coenzyme A oxidase N-terminal HAD_2 PF13419.1 gi|389848151|ref|YP_006350390.1| - 6.3e-11 42.7 1.3 9.7e-10 38.9 0.9 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389848151|ref|YP_006350390.1| - 8.9e-05 22.9 1.4 0.0099 16.3 1.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389848151|ref|YP_006350390.1| - 8.9e-05 22.1 0.0 0.00019 21.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|389848151|ref|YP_006350390.1| - 0.0007 19.8 0.2 0.00092 19.4 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase zf-ribbon_3 PF13248.1 gi|662859579|ref|YP_006350389.2| - 0.01 14.9 0.3 0.044 13.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|662859579|ref|YP_006350389.2| - 0.064 12.7 0.9 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|662859579|ref|YP_006350389.2| - 0.066 12.7 0.2 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2296 PF10058.4 gi|662859579|ref|YP_006350389.2| - 0.088 12.5 0.4 0.26 11.0 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Acetone_carb_G PF08882.6 gi|662859579|ref|YP_006350389.2| - 0.14 12.1 0.3 0.34 10.9 0.2 1.6 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit TF_Zn_Ribbon PF08271.7 gi|662859579|ref|YP_006350389.2| - 0.26 10.6 1.4 0.88 8.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding RtcB PF01139.12 gi|662859578|ref|YP_006350388.2| - 1.7e-147 491.7 0.0 1.9e-147 491.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.11 gi|662859577|ref|YP_006350387.2| - 3.4e-28 98.2 0.0 3.8e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_7 PF13508.1 gi|662859576|ref|YP_006350386.2| - 5.5e-12 45.6 0.1 1.1e-11 44.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|662859576|ref|YP_006350386.2| - 1.4e-11 44.2 0.0 2.8e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|662859576|ref|YP_006350386.2| - 3.7e-11 43.1 0.1 6.1e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|662859576|ref|YP_006350386.2| - 7.1e-11 41.7 0.0 1.4e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|662859576|ref|YP_006350386.2| - 0.00055 19.8 0.2 0.00082 19.2 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|662859576|ref|YP_006350386.2| - 0.0014 18.5 0.0 0.045 13.6 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|662859576|ref|YP_006350386.2| - 0.0023 17.9 0.0 0.0041 17.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|662859576|ref|YP_006350386.2| - 0.043 13.6 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|662859576|ref|YP_006350386.2| - 0.044 13.9 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AP_endonuc_2 PF01261.19 gi|389848146|ref|YP_006350385.1| - 1.1e-32 113.0 3.1 1.7e-32 112.4 2.2 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|389848146|ref|YP_006350385.1| - 2.6e-18 65.2 0.1 7.4e-18 63.8 0.0 1.9 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|389848146|ref|YP_006350385.1| - 0.084 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) GFO_IDH_MocA PF01408.17 gi|389848145|ref|YP_006350384.1| - 1e-19 71.2 0.0 2.1e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|389848145|ref|YP_006350384.1| - 4.4e-13 49.0 1.8 1.3e-12 47.4 0.3 2.4 2 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|389848145|ref|YP_006350384.1| - 0.00049 19.5 0.0 0.00098 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative oxidoreductase C terminal Saccharop_dh PF03435.13 gi|389848145|ref|YP_006350384.1| - 0.039 12.9 0.0 0.061 12.2 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|389848145|ref|YP_006350384.1| - 0.058 13.8 0.0 0.18 12.2 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IF-2B PF01008.12 gi|389848144|ref|YP_006350383.1| - 4.5e-45 153.8 0.1 5.1e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.17 gi|389848144|ref|YP_006350383.1| - 0.051 13.2 0.7 0.14 11.8 0.1 2.0 2 0 0 2 2 2 0 DeoR C terminal sensor domain FKBP_N PF01346.13 gi|389848144|ref|YP_006350383.1| - 0.076 13.0 0.2 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THDPS_N_2 PF14805.1 gi|389848144|ref|YP_006350383.1| - 0.081 12.8 0.2 0.22 11.4 0.1 1.9 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal Apolipoprotein PF01442.13 gi|389848144|ref|YP_006350383.1| - 0.082 12.4 3.4 0.1 12.1 2.4 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain AAA_22 PF13401.1 gi|389848144|ref|YP_006350383.1| - 0.21 11.7 0.6 0.45 10.6 0.4 1.6 1 1 1 2 2 2 0 AAA domain Pantoate_transf PF02548.10 gi|389848142|ref|YP_006350381.1| - 4.4e-100 334.1 1.0 4.9e-100 333.9 0.7 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|389848142|ref|YP_006350381.1| - 6.1e-07 28.9 2.1 8.3e-06 25.1 1.5 2.4 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase DUF2267 PF10025.4 gi|389848142|ref|YP_006350381.1| - 0.1 12.6 1.1 0.18 11.8 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) Abhydrolase_6 PF12697.2 gi|389848141|ref|YP_006350380.1| - 2.6e-37 128.9 6.0 3e-37 128.7 4.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848141|ref|YP_006350380.1| - 4e-21 75.2 1.3 1.3e-20 73.5 0.9 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848141|ref|YP_006350380.1| - 1.6e-16 60.5 2.4 2.3e-13 50.2 1.6 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|389848141|ref|YP_006350380.1| - 6.8e-05 23.1 0.0 8.2e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|389848141|ref|YP_006350380.1| - 0.00046 20.0 0.0 0.00093 19.0 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.8 gi|389848141|ref|YP_006350380.1| - 0.00094 18.6 0.0 0.023 14.1 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.3 gi|389848141|ref|YP_006350380.1| - 0.0018 18.0 0.7 0.0054 16.5 0.5 1.9 1 1 0 1 1 1 1 Putative lysophospholipase Esterase PF00756.15 gi|389848141|ref|YP_006350380.1| - 0.064 12.6 1.7 0.1 12.0 0.7 1.9 2 1 0 2 2 2 0 Putative esterase DLH PF01738.13 gi|389848141|ref|YP_006350380.1| - 0.078 12.2 0.1 7.7 5.7 0.0 2.4 3 0 0 3 3 3 0 Dienelactone hydrolase family PGAP1 PF07819.8 gi|389848141|ref|YP_006350380.1| - 0.08 12.5 0.3 2.1 7.8 0.2 2.4 1 1 0 1 1 1 0 PGAP1-like protein HSP20 PF00011.16 gi|389848140|ref|YP_006350379.1| - 0.011 15.5 0.6 0.68 9.8 0.4 2.1 1 1 0 1 1 1 0 Hsp20/alpha crystallin family AAA PF00004.24 gi|389848139|ref|YP_006350378.1| - 2.6e-98 325.3 0.0 2.9e-48 163.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|389848139|ref|YP_006350378.1| - 3.6e-24 84.5 0.0 1.5e-23 82.5 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|389848139|ref|YP_006350378.1| - 4e-17 62.6 0.1 2.1e-07 31.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|389848139|ref|YP_006350378.1| - 4e-16 59.5 0.4 1.2e-08 35.1 0.0 3.0 3 1 0 3 3 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|389848139|ref|YP_006350378.1| - 1.5e-15 56.8 0.0 1.8e-07 30.4 0.0 2.7 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|389848139|ref|YP_006350378.1| - 1.7e-12 46.7 0.3 3.7e-12 45.6 0.2 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|389848139|ref|YP_006350378.1| - 2.7e-12 46.9 0.1 0.00064 19.8 0.0 3.9 2 2 1 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|389848139|ref|YP_006350378.1| - 1.1e-11 45.6 1.3 0.00016 22.4 0.1 3.2 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|389848139|ref|YP_006350378.1| - 2e-11 43.7 0.6 0.00037 20.2 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|389848139|ref|YP_006350378.1| - 7.2e-11 41.5 0.2 0.00059 18.9 0.0 3.4 3 0 0 3 3 3 2 Zeta toxin TIP49 PF06068.8 gi|389848139|ref|YP_006350378.1| - 8.2e-11 41.2 0.5 0.00011 21.0 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|389848139|ref|YP_006350378.1| - 1.3e-10 41.3 0.0 0.00041 20.2 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|389848139|ref|YP_006350378.1| - 1.6e-10 40.9 0.0 0.00054 19.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|389848139|ref|YP_006350378.1| - 4.4e-10 39.1 0.0 0.00076 19.1 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|389848139|ref|YP_006350378.1| - 1e-08 34.8 0.0 0.0012 18.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_3 PF07726.6 gi|389848139|ref|YP_006350378.1| - 1.3e-07 31.3 0.0 0.012 15.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|389848139|ref|YP_006350378.1| - 1.5e-07 31.5 0.0 0.025 14.7 0.0 2.7 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|389848139|ref|YP_006350378.1| - 2.5e-07 31.0 0.0 0.014 15.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|389848139|ref|YP_006350378.1| - 7e-07 28.6 1.9 0.0099 15.0 0.0 2.7 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|389848139|ref|YP_006350378.1| - 1.2e-06 28.2 0.1 0.57 9.8 0.0 4.1 3 1 1 4 4 4 2 NACHT domain AAA_28 PF13521.1 gi|389848139|ref|YP_006350378.1| - 1.6e-06 28.2 0.0 0.03 14.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389848139|ref|YP_006350378.1| - 1.6e-06 27.6 6.2 0.89 8.9 0.0 4.6 2 2 2 4 4 4 3 AAA domain PhoH PF02562.11 gi|389848139|ref|YP_006350378.1| - 4.5e-06 26.0 0.1 0.038 13.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.8 gi|389848139|ref|YP_006350378.1| - 4.9e-06 25.6 0.0 0.015 14.2 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|389848139|ref|YP_006350378.1| - 5.2e-06 25.6 0.0 0.023 13.6 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|389848139|ref|YP_006350378.1| - 1.1e-05 24.9 0.0 0.15 11.5 0.0 2.8 2 1 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|389848139|ref|YP_006350378.1| - 1.2e-05 24.2 0.0 0.11 11.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ABC_tran PF00005.22 gi|389848139|ref|YP_006350378.1| - 2e-05 24.9 0.0 0.32 11.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Arch_ATPase PF01637.13 gi|389848139|ref|YP_006350378.1| - 3.3e-05 23.6 0.0 0.47 10.1 0.0 3.4 2 2 1 3 3 3 2 Archaeal ATPase AAA_30 PF13604.1 gi|389848139|ref|YP_006350378.1| - 8.7e-05 22.1 0.0 0.45 10.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|389848139|ref|YP_006350378.1| - 8.8e-05 22.5 0.0 0.62 10.1 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_11 PF13086.1 gi|389848139|ref|YP_006350378.1| - 9.4e-05 22.0 0.0 0.27 10.7 0.0 2.4 2 1 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|389848139|ref|YP_006350378.1| - 0.00011 21.3 0.4 0.8 8.7 0.0 3.5 3 1 1 4 4 3 2 KaiC Bac_DnaA PF00308.13 gi|389848139|ref|YP_006350378.1| - 0.00014 21.6 0.0 0.04 13.5 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_24 PF13479.1 gi|389848139|ref|YP_006350378.1| - 0.00015 21.3 0.0 0.065 12.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|389848139|ref|YP_006350378.1| - 0.00019 20.4 0.1 0.56 9.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|389848139|ref|YP_006350378.1| - 0.0002 21.1 1.3 0.83 9.3 0.0 3.6 3 2 1 4 4 4 2 NTPase T2SE PF00437.15 gi|389848139|ref|YP_006350378.1| - 0.00036 19.5 0.0 0.22 10.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|389848139|ref|YP_006350378.1| - 0.00059 19.4 0.0 0.87 9.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|389848139|ref|YP_006350378.1| - 0.00097 18.6 0.0 0.4 10.1 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|389848139|ref|YP_006350378.1| - 0.0045 16.8 0.0 4.2 7.2 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.10 gi|389848139|ref|YP_006350378.1| - 0.0067 16.2 0.0 2.6 7.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Cytidylate_kin2 PF13189.1 gi|389848139|ref|YP_006350378.1| - 0.0086 16.0 0.0 0.55 10.1 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family KAP_NTPase PF07693.9 gi|389848139|ref|YP_006350378.1| - 0.02 13.8 0.0 1.8 7.4 0.0 2.8 2 2 1 3 3 3 0 KAP family P-loop domain Vps4_C PF09336.5 gi|389848139|ref|YP_006350378.1| - 0.026 14.4 0.1 3.3 7.6 0.0 3.0 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain AFG1_ATPase PF03969.11 gi|389848139|ref|YP_006350378.1| - 0.034 12.9 0.0 2.9 6.5 0.0 2.5 3 0 0 3 3 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|389848139|ref|YP_006350378.1| - 0.045 12.9 0.0 8 5.5 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|389848139|ref|YP_006350378.1| - 0.066 12.8 0.0 4.1 7.0 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|389848139|ref|YP_006350378.1| - 0.069 13.0 0.0 2.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Torsin DEAD PF00270.24 gi|389848139|ref|YP_006350378.1| - 0.071 12.5 0.6 18 4.7 0.0 3.1 2 2 2 4 4 4 0 DEAD/DEAH box helicase PIF1 PF05970.9 gi|389848139|ref|YP_006350378.1| - 0.16 10.9 0.0 7.4 5.4 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase Zot PF05707.7 gi|389848139|ref|YP_006350378.1| - 0.16 11.3 0.1 27 4.1 0.0 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) AhpC-TSA PF00578.16 gi|389848138|ref|YP_006350377.1| - 2.4e-38 130.6 0.0 2.7e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|389848138|ref|YP_006350377.1| - 1.2e-24 86.4 0.0 1.4e-24 86.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|389848138|ref|YP_006350377.1| - 0.00014 21.3 0.0 0.00016 21.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.9 gi|389848138|ref|YP_006350377.1| - 0.0039 16.8 0.0 0.0092 15.6 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.1 gi|389848138|ref|YP_006350377.1| - 0.092 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF2762 PF10960.3 gi|389848137|ref|YP_006350376.1| - 1.4 8.6 5.6 2.1 8.1 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2762) DNA_primase_S PF01896.14 gi|389848136|ref|YP_006350375.1| - 2.9e-22 79.0 0.0 4.7e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Aldo_ket_red PF00248.16 gi|389848135|ref|YP_006350374.1| - 0.054 12.3 0.1 0.062 12.1 0.0 1.1 1 0 0 1 1 1 0 Aldo/keto reductase family SBP_bac_8 PF13416.1 gi|389848134|ref|YP_006350373.1| - 5.9e-16 59.0 0.3 5.9e-16 59.0 0.2 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|389848134|ref|YP_006350373.1| - 0.00051 19.8 2.5 0.00051 19.8 1.7 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence K_channel_TID PF07941.6 gi|389848134|ref|YP_006350373.1| - 3.2 8.0 6.0 1.5 9.1 2.0 2.0 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain BPD_transp_1 PF00528.17 gi|389848133|ref|YP_006350372.1| - 6.5e-17 61.6 19.8 6.5e-17 61.6 13.7 2.7 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389848132|ref|YP_006350371.1| - 1.7e-09 37.4 20.8 1.7e-09 37.4 14.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|389848131|ref|YP_006350370.1| - 2.5e-32 112.0 0.0 4.6e-32 111.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848131|ref|YP_006350370.1| - 1.1e-10 41.9 0.0 6.7e-06 26.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389848131|ref|YP_006350370.1| - 4.3e-06 26.1 0.2 3.3e-05 23.2 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|389848131|ref|YP_006350370.1| - 6.3e-05 22.1 0.0 0.0033 16.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|389848131|ref|YP_006350370.1| - 0.00064 19.2 0.0 0.0031 16.9 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain TOBE PF03459.12 gi|389848131|ref|YP_006350370.1| - 0.0012 18.9 0.0 7.9 6.6 0.0 4.2 2 2 1 3 3 3 0 TOBE domain AAA_17 PF13207.1 gi|389848131|ref|YP_006350370.1| - 0.0014 19.3 0.2 0.005 17.6 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|389848131|ref|YP_006350370.1| - 0.0019 18.3 0.2 0.02 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|389848131|ref|YP_006350370.1| - 0.0019 16.9 0.0 0.0023 16.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein TOBE_2 PF08402.5 gi|389848131|ref|YP_006350370.1| - 0.0041 17.0 0.1 0.074 13.0 0.1 2.7 1 1 0 1 1 1 1 TOBE domain AAA_25 PF13481.1 gi|389848131|ref|YP_006350370.1| - 0.0044 16.4 0.3 0.047 13.0 0.0 2.5 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|389848131|ref|YP_006350370.1| - 0.0048 16.8 0.1 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|389848131|ref|YP_006350370.1| - 0.0055 15.8 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389848131|ref|YP_006350370.1| - 0.011 15.2 0.1 0.021 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|389848131|ref|YP_006350370.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|389848131|ref|YP_006350370.1| - 0.014 15.5 0.7 0.071 13.3 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|389848131|ref|YP_006350370.1| - 0.017 15.4 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|389848131|ref|YP_006350370.1| - 0.019 14.8 0.5 0.16 11.8 0.5 2.5 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|389848131|ref|YP_006350370.1| - 0.035 14.2 0.0 0.079 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|389848131|ref|YP_006350370.1| - 0.094 12.6 0.0 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|389848131|ref|YP_006350370.1| - 0.1 12.0 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|389848131|ref|YP_006350370.1| - 0.11 12.2 0.1 0.3 10.7 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|389848131|ref|YP_006350370.1| - 0.11 12.4 0.1 0.36 10.7 0.1 1.9 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|389848131|ref|YP_006350370.1| - 0.34 11.2 1.5 0.67 10.2 0.2 2.3 2 2 1 3 3 2 0 AAA domain YMF19 PF02326.10 gi|389848130|ref|YP_006350369.1| - 0.12 12.9 0.1 0.14 12.7 0.0 1.1 1 0 0 1 1 1 0 Plant ATP synthase F0 GFO_IDH_MocA PF01408.17 gi|389848129|ref|YP_006350368.1| - 1.2e-26 93.5 0.0 2.1e-26 92.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|389848129|ref|YP_006350368.1| - 6.4e-09 35.6 1.2 2.1e-08 33.9 0.0 2.3 2 1 1 3 3 3 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|389848129|ref|YP_006350368.1| - 4.2e-08 32.5 0.0 9.3e-08 31.4 0.0 1.6 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|389848129|ref|YP_006350368.1| - 1.3e-06 28.7 0.0 2.8e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|389848129|ref|YP_006350368.1| - 2.1e-05 24.4 0.0 4.3e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|389848129|ref|YP_006350368.1| - 2.9e-05 23.5 0.0 5.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|389848129|ref|YP_006350368.1| - 0.00037 20.9 0.0 0.00073 20.0 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|389848129|ref|YP_006350368.1| - 0.0011 19.3 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ThiF PF00899.16 gi|389848129|ref|YP_006350368.1| - 0.0075 16.0 1.8 0.51 10.1 0.4 2.4 1 1 1 2 2 2 1 ThiF family NAD_binding_3 PF03447.11 gi|389848129|ref|YP_006350368.1| - 0.077 13.3 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain HH_signal PF01085.13 gi|389848129|ref|YP_006350368.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Hedgehog amino-terminal signalling domain TF_Zn_Ribbon PF08271.7 gi|389848128|ref|YP_006350367.1| - 0.34 10.2 11.4 0.2 10.9 0.4 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|389848128|ref|YP_006350367.1| - 3.3 7.7 5.9 21 5.1 0.0 2.7 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.1 gi|389848128|ref|YP_006350367.1| - 8.9 5.5 7.6 10 5.4 0.6 2.4 1 1 1 2 2 2 0 Transcription factor zinc-finger Regulator_TrmB PF11495.3 gi|389848127|ref|YP_006350366.1| - 6.4e-75 251.1 1.3 7.3e-75 250.9 0.4 1.5 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|389848127|ref|YP_006350366.1| - 3.8e-21 74.5 0.0 8.6e-21 73.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389848127|ref|YP_006350366.1| - 1.7e-06 27.5 0.1 4.3e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|389848127|ref|YP_006350366.1| - 3.3e-06 26.8 0.0 1.1e-05 25.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389848127|ref|YP_006350366.1| - 0.00014 21.3 0.1 0.00032 20.2 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389848127|ref|YP_006350366.1| - 0.00024 20.4 0.0 0.0011 18.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.6 gi|389848127|ref|YP_006350366.1| - 0.0018 17.5 0.0 0.0056 15.9 0.0 1.8 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|389848127|ref|YP_006350366.1| - 0.0021 18.1 0.0 0.0048 16.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|389848127|ref|YP_006350366.1| - 0.0043 16.6 0.0 0.013 15.1 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|389848127|ref|YP_006350366.1| - 0.026 14.4 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_9 PF08221.6 gi|389848127|ref|YP_006350366.1| - 0.04 13.7 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r4 PF04545.11 gi|389848127|ref|YP_006350366.1| - 0.047 13.0 0.2 2.3 7.5 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 MarR PF01047.17 gi|389848127|ref|YP_006350366.1| - 0.062 13.0 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family BssS PF13991.1 gi|389848127|ref|YP_006350366.1| - 0.08 12.6 0.0 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 BssS protein family HTH_37 PF13744.1 gi|389848127|ref|YP_006350366.1| - 0.14 12.0 0.1 2.4 8.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|389848127|ref|YP_006350366.1| - 0.29 10.8 3.7 18 5.0 0.0 3.3 4 0 0 4 4 3 0 HTH domain MS_channel PF00924.13 gi|389848126|ref|YP_006350365.1| - 4.1e-35 120.9 0.0 6.1e-35 120.4 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2187 PF09953.4 gi|389848126|ref|YP_006350365.1| - 0.025 14.3 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) Peptidase_C93 PF06035.6 gi|389848126|ref|YP_006350365.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP DDE_Tnp_IS240 PF13610.1 gi|389848126|ref|YP_006350365.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 DDE domain FA_desaturase PF00487.19 gi|389848126|ref|YP_006350365.1| - 0.14 11.5 1.7 0.21 10.9 1.2 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Usp PF00582.21 gi|389848125|ref|YP_006350364.1| - 5.8e-13 49.2 2.3 1e-12 48.4 1.6 1.4 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|389848125|ref|YP_006350364.1| - 0.048 13.3 0.4 0.38 10.4 0.3 2.1 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Apc5 PF12862.2 gi|389848125|ref|YP_006350364.1| - 0.063 13.1 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 5_nucleotid_C PF02872.13 gi|389848124|ref|YP_006350363.1| - 2.7e-29 102.1 0.0 4.7e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|389848124|ref|YP_006350363.1| - 2.1e-07 30.5 0.0 3.3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|389848124|ref|YP_006350363.1| - 0.027 14.3 0.5 0.098 12.4 0.3 2.0 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Dodecin PF07311.7 gi|389848123|ref|YP_006350362.1| - 8.6e-22 76.9 1.6 9.4e-22 76.8 1.1 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.4 gi|662859575|ref|YP_006350361.2| - 0.0034 16.8 0.7 0.0068 15.8 0.5 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4234 PF14018.1 gi|662859575|ref|YP_006350361.2| - 1.4 8.6 6.2 3 7.6 2.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) Sterol_MT_C PF08498.5 gi|389848121|ref|YP_006350360.1| - 0.023 14.6 0.4 0.067 13.1 0.0 1.9 2 0 0 2 2 2 0 Sterol methyltransferase C-terminal TF_Zn_Ribbon PF08271.7 gi|389848119|ref|YP_006350358.1| - 0.023 14.0 1.3 0.039 13.2 0.9 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_6 PF14599.1 gi|389848119|ref|YP_006350358.1| - 0.043 13.6 2.8 0.72 9.6 0.2 2.3 1 1 1 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.5 gi|389848119|ref|YP_006350358.1| - 0.044 13.7 0.7 0.083 12.8 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|389848119|ref|YP_006350358.1| - 0.072 12.5 2.0 0.13 11.8 1.4 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Mcm10 PF09332.6 gi|389848119|ref|YP_006350358.1| - 0.11 11.8 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 Mcm10 replication factor NOB1_Zn_bind PF08772.6 gi|389848119|ref|YP_006350358.1| - 0.2 11.5 0.8 0.33 10.8 0.6 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like A2L_zn_ribbon PF08792.5 gi|389848119|ref|YP_006350358.1| - 2.2 7.8 5.6 4.1 6.9 3.0 2.0 2 1 0 2 2 2 0 A2L zinc ribbon domain Fe-S_biosyn PF01521.15 gi|389848118|ref|YP_006350357.1| - 9.4e-20 70.6 0.0 1.1e-19 70.4 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Histidinol_dh PF00815.15 gi|389848117|ref|YP_006350356.1| - 2.1e-151 504.2 4.2 2.5e-151 503.9 2.9 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF3573 PF12097.3 gi|389848116|ref|YP_006350355.1| - 0.037 12.6 0.0 0.045 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Aminotran_5 PF00266.14 gi|389848115|ref|YP_006350354.1| - 1e-31 110.0 0.0 1.1e-31 109.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|389848115|ref|YP_006350354.1| - 0.00011 20.5 0.0 0.00017 20.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|389848115|ref|YP_006350354.1| - 0.0027 16.8 0.1 0.0052 15.8 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family FAD-oxidase_C PF02913.14 gi|389848114|ref|YP_006350353.1| - 6.3e-58 196.0 5.9 1.2e-57 195.1 2.7 2.3 2 1 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|389848114|ref|YP_006350353.1| - 1.4e-39 134.7 0.1 4e-39 133.2 0.1 1.9 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|389848114|ref|YP_006350353.1| - 1.2e-08 35.1 5.4 2.7e-08 34.0 3.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|389848114|ref|YP_006350353.1| - 2.7e-08 33.6 5.5 6.4e-08 32.5 3.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389848114|ref|YP_006350353.1| - 3.3e-06 27.4 0.3 3.3e-06 27.4 0.2 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.11 gi|389848114|ref|YP_006350353.1| - 3.3e-06 26.9 0.0 8.9e-05 22.4 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|389848114|ref|YP_006350353.1| - 0.00046 20.5 5.2 0.0011 19.2 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389848114|ref|YP_006350353.1| - 0.0048 16.7 8.6 0.13 12.2 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|389848114|ref|YP_006350353.1| - 0.009 15.8 2.9 0.55 10.1 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|389848114|ref|YP_006350353.1| - 0.024 14.4 11.3 0.14 11.9 1.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389848114|ref|YP_006350353.1| - 0.031 13.8 12.7 0.36 10.5 3.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389848114|ref|YP_006350353.1| - 0.036 14.3 10.6 0.07 13.4 1.5 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|389848114|ref|YP_006350353.1| - 0.84 10.1 11.4 1.3 9.5 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|389848114|ref|YP_006350353.1| - 3.3 8.3 8.8 5.9 7.5 0.2 4.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|389848114|ref|YP_006350353.1| - 4.6 7.2 12.2 8.3 6.4 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Maff2 PF12750.2 gi|389848113|ref|YP_006350352.1| - 0.13 11.8 0.9 0.23 11.0 0.6 1.3 1 0 0 1 1 1 0 Maff2 family Flavodoxin_5 PF12724.2 gi|389848112|ref|YP_006350351.1| - 5.1e-06 26.5 0.1 5.5e-06 26.4 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|389848112|ref|YP_006350351.1| - 0.00027 20.9 0.1 0.00027 20.9 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin TMP-TENI PF02581.12 gi|389848111|ref|YP_006350350.1| - 4e-60 202.0 5.7 4.7e-60 201.7 4.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|389848111|ref|YP_006350350.1| - 1.5e-05 24.2 4.6 1.5e-05 24.2 3.2 1.5 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|389848111|ref|YP_006350350.1| - 0.00017 20.5 2.7 0.0002 20.3 1.5 1.6 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|389848111|ref|YP_006350350.1| - 0.0003 19.7 0.9 0.0005 18.9 0.2 1.6 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|389848111|ref|YP_006350350.1| - 0.00083 18.5 11.8 0.0019 17.4 8.2 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|389848111|ref|YP_006350350.1| - 0.005 15.8 0.3 0.0087 15.0 0.2 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase FlpD PF02662.11 gi|389848111|ref|YP_006350350.1| - 0.011 15.4 0.1 0.025 14.2 0.1 1.6 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit OMPdecase PF00215.19 gi|389848111|ref|YP_006350350.1| - 0.019 14.3 1.2 0.03 13.7 0.8 1.4 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family AIRS PF00586.19 gi|389848111|ref|YP_006350350.1| - 0.039 14.1 3.2 3.1 8.0 0.2 2.4 2 1 0 2 2 2 0 AIR synthase related protein, N-terminal domain DUF561 PF04481.7 gi|389848111|ref|YP_006350350.1| - 0.049 12.5 1.0 0.12 11.2 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) Oxidored_FMN PF00724.15 gi|389848111|ref|YP_006350350.1| - 0.12 11.4 0.3 0.36 9.7 0.2 1.8 1 1 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family Trp_syntA PF00290.15 gi|389848111|ref|YP_006350350.1| - 0.14 10.6 2.6 0.24 9.9 0.9 2.0 2 1 1 3 3 3 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|389848111|ref|YP_006350350.1| - 3.5 6.4 11.2 4.1 6.2 7.4 1.3 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain HK PF02110.10 gi|389848110|ref|YP_006350349.1| - 8.7e-67 224.8 6.6 9.9e-67 224.6 4.6 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|389848110|ref|YP_006350349.1| - 3.3e-05 23.2 0.4 4.6e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|389848110|ref|YP_006350349.1| - 0.0033 16.7 3.7 0.0048 16.2 2.6 1.3 1 1 0 1 1 1 1 Carbohydrate kinase TPP_enzyme_C PF02775.16 gi|389848110|ref|YP_006350349.1| - 0.094 12.2 0.0 0.094 12.2 0.0 2.1 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Phos_pyr_kin PF08543.7 gi|389848109|ref|YP_006350348.1| - 2.6e-88 295.3 2.1 3e-88 295.1 1.5 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|389848109|ref|YP_006350348.1| - 2.5e-11 43.2 2.8 3.2e-11 42.9 1.9 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|389848109|ref|YP_006350348.1| - 0.00023 20.5 1.0 0.00043 19.6 0.7 1.5 1 1 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|389848109|ref|YP_006350348.1| - 0.00089 18.5 0.5 0.36 9.9 0.0 2.3 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family DUF2917 PF11142.3 gi|389848108|ref|YP_006350347.1| - 0.038 13.1 0.2 0.045 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) Glyoxalase PF00903.20 gi|662859574|ref|YP_006350346.2| - 5.8e-26 90.9 0.0 2.2e-25 89.0 0.0 2.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|662859574|ref|YP_006350346.2| - 4.8e-11 43.2 1.9 3.3e-05 24.4 0.1 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|662859574|ref|YP_006350346.2| - 1.1e-07 31.8 0.4 0.65 10.0 0.0 3.2 1 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Abhydrolase_6 PF12697.2 gi|389848106|ref|YP_006350345.1| - 2.2e-24 86.6 7.6 2.8e-24 86.2 5.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848106|ref|YP_006350345.1| - 1.8e-12 47.2 0.1 3.6e-12 46.2 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389848106|ref|YP_006350345.1| - 1.5e-06 27.9 0.5 1.3e-05 24.9 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|389848106|ref|YP_006350345.1| - 0.12 12.2 0.6 0.6 10.0 0.0 2.3 2 1 0 2 2 2 0 Putative lysophospholipase HTH_10 PF04967.7 gi|389848105|ref|YP_006350344.1| - 4.1e-13 48.6 0.0 6.3e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain SseB_C PF14581.1 gi|389848105|ref|YP_006350344.1| - 0.002 17.9 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 SseB protein C-terminal domain Acylphosphatase PF00708.13 gi|389848105|ref|YP_006350344.1| - 0.032 14.3 0.0 0.095 12.8 0.0 1.8 1 1 0 1 1 1 0 Acylphosphatase Abhydrolase_1 PF00561.15 gi|389848104|ref|YP_006350343.1| - 4.7e-17 62.3 0.0 2e-16 60.2 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|389848104|ref|YP_006350343.1| - 2.7e-13 50.3 0.0 5e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|389848104|ref|YP_006350343.1| - 2.4e-12 46.5 0.0 4.6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|389848104|ref|YP_006350343.1| - 4.1e-09 36.3 0.0 3.3e-08 33.4 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|389848104|ref|YP_006350343.1| - 2.3e-08 34.0 0.1 5.3e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DLH PF01738.13 gi|389848104|ref|YP_006350343.1| - 9e-05 21.8 0.0 0.0053 16.0 0.0 2.9 2 1 1 3 3 3 1 Dienelactone hydrolase family DUF4332 PF14229.1 gi|389848104|ref|YP_006350343.1| - 0.00012 22.0 0.2 0.00078 19.3 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|389848104|ref|YP_006350343.1| - 0.00014 21.1 0.0 0.00024 20.3 0.0 1.4 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF3141 PF11339.3 gi|389848104|ref|YP_006350343.1| - 0.00022 19.6 0.0 0.00072 18.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) Cdd1 PF11731.3 gi|389848104|ref|YP_006350343.1| - 0.00025 20.8 0.0 0.00059 19.7 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus FSH1 PF03959.8 gi|389848104|ref|YP_006350343.1| - 0.0017 17.8 0.0 0.026 13.9 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_2 PF01674.13 gi|389848104|ref|YP_006350343.1| - 0.0071 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 2) TfoX_C PF04994.8 gi|389848104|ref|YP_006350343.1| - 0.0094 15.8 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 1 TfoX C-terminal domain Homeobox PF00046.24 gi|389848104|ref|YP_006350343.1| - 0.068 12.8 0.1 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 Homeobox domain PGAP1 PF07819.8 gi|389848104|ref|YP_006350343.1| - 0.093 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein SAM_2 PF07647.12 gi|389848104|ref|YP_006350343.1| - 0.15 11.9 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) YHS PF04945.8 gi|389848103|ref|YP_006350342.1| - 0.0012 18.6 0.1 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 YHS domain PPDK_N PF01326.14 gi|389848102|ref|YP_006350341.1| - 2.1e-91 306.4 1.7 2.6e-91 306.1 0.2 1.7 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|389848102|ref|YP_006350341.1| - 1.4e-22 79.0 0.9 1.3e-21 75.9 0.0 2.6 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HTH_10 PF04967.7 gi|389848101|ref|YP_006350340.1| - 1.6e-13 50.0 0.0 3.3e-13 48.9 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389848101|ref|YP_006350340.1| - 5e-05 22.5 0.1 8.5e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 DUF3375 PF11855.3 gi|389848101|ref|YP_006350340.1| - 0.011 14.5 0.1 0.015 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) MarR_2 PF12802.2 gi|389848101|ref|YP_006350340.1| - 0.022 14.4 0.3 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|389848101|ref|YP_006350340.1| - 0.022 14.3 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4253 PF14062.1 gi|389848101|ref|YP_006350340.1| - 0.032 13.8 0.2 0.065 12.8 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) HTH_5 PF01022.15 gi|389848101|ref|YP_006350340.1| - 0.033 13.8 0.1 0.076 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|389848101|ref|YP_006350340.1| - 0.085 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|389848101|ref|YP_006350340.1| - 0.091 12.2 0.1 0.24 10.8 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|389848101|ref|YP_006350340.1| - 0.1 11.9 0.1 0.43 10.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389848101|ref|YP_006350340.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family TAT_signal PF10518.4 gi|662859573|ref|YP_006350337.2| - 0.032 14.2 4.8 0.064 13.2 3.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DAO PF01266.19 gi|389848096|ref|YP_006350335.1| - 2.2e-11 43.3 2.8 9.2e-05 21.4 1.3 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|389848096|ref|YP_006350335.1| - 4.6e-08 32.4 0.7 0.00015 20.9 0.3 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|389848096|ref|YP_006350335.1| - 5.2e-07 29.7 0.8 7.5e-06 25.9 0.6 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|389848096|ref|YP_006350335.1| - 7.4e-07 28.5 0.7 1.5e-06 27.5 0.5 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|389848096|ref|YP_006350335.1| - 9.5e-07 27.7 1.6 0.00022 19.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|389848096|ref|YP_006350335.1| - 2.4e-06 26.6 0.3 3.7e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|389848096|ref|YP_006350335.1| - 1.5e-05 23.6 1.4 0.00098 17.6 1.7 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|389848096|ref|YP_006350335.1| - 1.8e-05 24.7 1.8 0.00085 19.3 0.4 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|389848096|ref|YP_006350335.1| - 0.00029 20.6 1.8 0.0042 16.8 1.2 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|389848096|ref|YP_006350335.1| - 0.0012 17.7 1.7 0.0042 15.9 1.6 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|389848096|ref|YP_006350335.1| - 0.0028 16.7 0.2 0.0046 16.0 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|389848096|ref|YP_006350335.1| - 0.0064 15.4 0.7 0.12 11.2 0.5 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|389848096|ref|YP_006350335.1| - 0.1 13.0 0.6 4.8 7.6 0.8 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|389848094|ref|YP_006350333.1| - 4.5e-53 179.0 0.0 6.2e-53 178.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|389848094|ref|YP_006350333.1| - 2.3e-11 43.2 0.0 2.8e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|389848094|ref|YP_006350333.1| - 0.00045 20.1 0.0 0.00088 19.1 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|389848094|ref|YP_006350333.1| - 0.015 15.7 0.1 0.05 14.0 0.0 2.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|389848094|ref|YP_006350333.1| - 0.043 13.6 0.6 0.083 12.7 0.2 1.7 2 0 0 2 2 2 0 ThiF family ILVD_EDD PF00920.16 gi|389848093|ref|YP_006350332.1| - 3.6e-210 698.8 1.0 4.1e-210 698.6 0.7 1.0 1 0 0 1 1 1 1 Dehydratase family MoCF_biosynth PF00994.19 gi|389848092|ref|YP_006350331.1| - 5e-27 94.0 0.4 6.2e-27 93.7 0.3 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain LacAB_rpiB PF02502.13 gi|389848092|ref|YP_006350331.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Ribose/Galactose Isomerase Elf-1_N PF12310.3 gi|389848092|ref|YP_006350331.1| - 0.51 10.3 3.1 0.52 10.2 0.2 2.0 1 1 1 2 2 2 0 Transcription factor protein N terminal DUF2796 PF10986.3 gi|389848092|ref|YP_006350331.1| - 2.1 8.2 12.7 2.9 7.8 8.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) ADH_zinc_N PF00107.21 gi|389848091|ref|YP_006350330.1| - 1.4e-39 134.6 0.0 3.8e-39 133.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|389848091|ref|YP_006350330.1| - 6.3e-21 74.1 0.0 4.2e-20 71.5 0.0 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|389848091|ref|YP_006350330.1| - 1.6e-19 71.0 0.0 3.1e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|389848091|ref|YP_006350330.1| - 0.00029 20.4 0.2 0.00051 19.6 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|389848091|ref|YP_006350330.1| - 0.00036 20.5 0.0 0.00055 19.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|389848091|ref|YP_006350330.1| - 0.00089 18.9 0.5 0.002 17.8 0.3 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DapB_N PF01113.15 gi|389848091|ref|YP_006350330.1| - 0.015 15.2 0.7 0.028 14.3 0.2 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|389848091|ref|YP_006350330.1| - 0.044 14.1 0.2 0.082 13.2 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Tropomyosin PF00261.15 gi|389848088|ref|YP_006350327.1| - 0.002 17.2 4.5 0.004 16.2 3.1 1.4 1 0 0 1 1 1 1 Tropomyosin DivIC PF04977.10 gi|389848088|ref|YP_006350327.1| - 0.0032 16.9 4.9 0.044 13.2 0.7 2.5 1 1 1 2 2 2 1 Septum formation initiator WD40_alt PF14077.1 gi|389848088|ref|YP_006350327.1| - 0.045 13.3 2.7 0.67 9.6 0.0 2.6 2 0 0 2 2 2 0 Alternative WD40 repeat motif CALCOCO1 PF07888.6 gi|389848088|ref|YP_006350327.1| - 0.083 11.1 1.7 0.13 10.4 1.2 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Mnd1 PF03962.10 gi|389848088|ref|YP_006350327.1| - 0.083 12.5 2.2 0.17 11.5 1.5 1.4 1 0 0 1 1 1 0 Mnd1 family Tropomyosin_1 PF12718.2 gi|389848088|ref|YP_006350327.1| - 0.1 12.4 7.0 0.076 12.8 2.8 2.0 2 0 0 2 2 2 0 Tropomyosin like DUF904 PF06005.7 gi|389848088|ref|YP_006350327.1| - 0.1 12.9 2.0 6.6 7.1 2.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF904) AKNA PF12443.3 gi|389848088|ref|YP_006350327.1| - 0.12 12.4 0.4 4 7.5 0.1 2.6 2 1 0 2 2 2 0 AT-hook-containing transcription factor TSC22 PF01166.13 gi|389848088|ref|YP_006350327.1| - 0.13 12.2 1.4 1.5 8.8 0.2 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family Ring_hydroxyl_B PF00866.13 gi|389848088|ref|YP_006350327.1| - 0.21 11.2 2.3 0.3 10.7 0.5 2.0 2 0 0 2 2 2 0 Ring hydroxylating beta subunit bZIP_1 PF00170.16 gi|389848088|ref|YP_006350327.1| - 0.22 11.5 3.6 6.1 6.8 0.3 2.4 1 1 1 2 2 2 0 bZIP transcription factor GreA_GreB_N PF03449.10 gi|389848088|ref|YP_006350327.1| - 0.53 10.3 5.4 0.54 10.3 0.4 2.8 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal DUF4140 PF13600.1 gi|389848088|ref|YP_006350327.1| - 0.7 10.3 9.3 2.3 8.7 1.2 3.0 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|389848088|ref|YP_006350327.1| - 1.4 8.4 5.2 3.9 7.0 3.7 1.5 1 1 0 1 1 1 0 IncA protein DUF1611 PF07755.6 gi|389848087|ref|YP_006350326.1| - 3.2e-108 360.9 0.1 3.8e-108 360.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) AAA_26 PF13500.1 gi|389848087|ref|YP_006350326.1| - 0.013 15.0 0.1 2.1 7.8 0.0 2.3 1 1 1 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.17 gi|389848087|ref|YP_006350326.1| - 0.024 15.1 0.2 0.15 12.5 0.0 2.3 3 1 1 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold PK_C PF02887.11 gi|389848087|ref|YP_006350326.1| - 0.12 11.9 0.0 0.59 9.6 0.0 2.2 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain MR_MLE_C PF13378.1 gi|389848086|ref|YP_006350325.1| - 1.4e-18 66.8 0.3 1.8e-16 60.0 0.1 2.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|389848086|ref|YP_006350325.1| - 7.7e-16 58.3 1.4 1.5e-15 57.4 0.3 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|389848086|ref|YP_006350325.1| - 1e-14 54.4 0.0 1.9e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|389848086|ref|YP_006350325.1| - 0.0058 15.5 0.1 0.011 14.6 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.17 gi|389848086|ref|YP_006350325.1| - 0.012 14.5 0.0 0.022 13.7 0.0 1.4 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain DUF3526 PF12040.3 gi|389848086|ref|YP_006350325.1| - 0.062 13.4 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3526) PspA_IM30 PF04012.7 gi|662859572|ref|YP_006350323.2| - 4.9e-30 104.5 30.7 4.9e-30 104.5 21.3 1.5 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|662859572|ref|YP_006350323.2| - 0.067 12.5 51.0 22 4.3 24.8 4.1 1 1 0 2 2 2 0 Snf7 Spc7 PF08317.6 gi|662859572|ref|YP_006350323.2| - 0.092 11.3 24.5 0.016 13.9 13.7 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein Cut8_C PF08559.5 gi|662859572|ref|YP_006350323.2| - 0.14 11.9 1.0 0.78 9.5 0.7 2.4 1 1 0 1 1 1 0 Cut8 six-helix bundle DUF972 PF06156.8 gi|662859572|ref|YP_006350323.2| - 0.21 11.9 23.5 0.93 9.8 4.9 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Flagellin_C PF00700.16 gi|662859572|ref|YP_006350323.2| - 0.22 11.6 0.0 0.22 11.6 0.0 4.5 3 2 1 4 4 4 0 Bacterial flagellin C-terminal helical region Prominin PF05478.6 gi|662859572|ref|YP_006350323.2| - 0.37 8.2 9.4 0.55 7.7 6.5 1.2 1 0 0 1 1 1 0 Prominin ERM PF00769.14 gi|662859572|ref|YP_006350323.2| - 0.46 9.9 45.2 0.061 12.8 26.0 2.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF948 PF06103.6 gi|662859572|ref|YP_006350323.2| - 0.5 10.2 8.4 5.9 6.8 1.1 3.6 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF342 PF03961.8 gi|662859572|ref|YP_006350323.2| - 0.56 8.5 21.6 7.2 4.8 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF342) AAA_13 PF13166.1 gi|662859572|ref|YP_006350323.2| - 2.4 6.4 21.6 0.55 8.6 12.3 1.8 1 1 0 1 1 1 0 AAA domain ATG_C PF09333.6 gi|662859572|ref|YP_006350323.2| - 2.5 8.3 7.7 2.6 8.2 0.2 3.0 1 1 2 3 3 3 0 ATG C terminal domain DUF4200 PF13863.1 gi|662859572|ref|YP_006350323.2| - 2.8 7.8 38.1 0.62 10.0 3.2 4.3 2 1 3 5 5 5 0 Domain of unknown function (DUF4200) Baculo_PEP_C PF04513.7 gi|662859572|ref|YP_006350323.2| - 3.4 7.4 8.5 20 5.0 4.1 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus MerR-DNA-bind PF09278.6 gi|662859572|ref|YP_006350323.2| - 3.5 8.1 23.3 1.9 8.9 0.2 4.5 4 1 1 5 5 4 0 MerR, DNA binding Hid1 PF12722.2 gi|662859572|ref|YP_006350323.2| - 3.9 5.0 9.4 4.4 4.8 6.5 1.2 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DivIC PF04977.10 gi|662859572|ref|YP_006350323.2| - 6.1 6.4 29.6 0.32 10.5 2.9 4.5 3 1 0 4 4 4 0 Septum formation initiator DUF2935 PF11155.3 gi|662859572|ref|YP_006350323.2| - 6.9 6.7 7.4 16 5.6 1.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) DUF3810 PF12725.2 gi|662859572|ref|YP_006350323.2| - 7.4 5.3 9.8 0.6 8.9 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) IncA PF04156.9 gi|662859572|ref|YP_006350323.2| - 8.2 5.9 33.2 7.9 6.0 8.6 3.2 1 1 2 3 3 3 0 IncA protein Abhydrolase_5 PF12695.2 gi|662859571|ref|YP_006350322.2| - 1.9e-16 60.1 0.3 2.9e-16 59.5 0.2 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|662859571|ref|YP_006350322.2| - 9.6e-09 35.4 7.6 1e-05 25.5 1.7 2.3 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|662859571|ref|YP_006350322.2| - 5.8e-07 29.0 0.1 7.6e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|662859571|ref|YP_006350322.2| - 2.9e-05 23.7 1.3 0.058 12.9 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|662859571|ref|YP_006350322.2| - 9.5e-05 21.9 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.13 gi|662859571|ref|YP_006350322.2| - 0.00058 19.3 0.1 0.0011 18.4 0.1 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Lipase_3 PF01764.20 gi|662859571|ref|YP_006350322.2| - 0.0046 16.5 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) DUF1100 PF06500.6 gi|662859571|ref|YP_006350322.2| - 0.014 13.9 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) FSH1 PF03959.8 gi|662859571|ref|YP_006350322.2| - 0.018 14.4 0.0 0.036 13.4 0.0 1.4 1 1 0 1 1 1 0 Serine hydrolase (FSH1) BAAT_C PF08840.6 gi|662859571|ref|YP_006350322.2| - 0.045 13.4 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|662859571|ref|YP_006350322.2| - 0.058 12.7 0.1 0.11 11.9 0.1 1.5 1 1 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.16 gi|662859571|ref|YP_006350322.2| - 0.06 12.5 0.1 0.14 11.3 0.1 1.6 1 0 0 1 1 1 0 Prolyl oligopeptidase family AXE1 PF05448.7 gi|662859571|ref|YP_006350322.2| - 0.11 11.0 0.1 0.19 10.2 0.1 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) LIP PF03583.9 gi|662859571|ref|YP_006350322.2| - 0.13 11.4 2.2 5.8 6.0 0.1 2.2 2 0 0 2 2 2 0 Secretory lipase UCR_UQCRX_QCR9 PF05365.7 gi|389848082|ref|YP_006350321.1| - 0.19 11.4 0.0 0.19 11.4 0.0 2.3 2 1 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF389 PF04087.9 gi|389848082|ref|YP_006350321.1| - 2.6 8.0 9.5 5 7.0 6.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF389) Abi PF02517.11 gi|389848082|ref|YP_006350321.1| - 6.2 7.0 9.0 0.39 10.8 0.4 2.3 1 1 1 2 2 2 0 CAAX protease self-immunity DUF4099 PF13351.1 gi|389848076|ref|YP_006350315.1| - 0.073 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4099) TFIIS_C PF01096.13 gi|662859570|ref|YP_006350314.2| - 5.3e-17 61.1 4.1 5.3e-17 61.1 2.8 2.8 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|662859570|ref|YP_006350314.2| - 1.1e-05 24.9 10.5 2.8e-05 23.6 1.6 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|662859570|ref|YP_006350314.2| - 5.5e-05 22.7 11.2 0.0064 16.1 0.7 2.9 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|662859570|ref|YP_006350314.2| - 0.00069 19.3 1.6 0.00069 19.3 1.1 2.6 3 1 0 3 3 3 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|662859570|ref|YP_006350314.2| - 0.0019 17.9 12.1 9.3 6.1 8.4 2.8 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|662859570|ref|YP_006350314.2| - 0.0089 15.4 11.8 0.31 10.5 0.2 3.7 3 1 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|662859570|ref|YP_006350314.2| - 0.0099 15.5 13.2 0.14 11.8 0.2 3.9 2 2 1 3 3 3 1 Ogr/Delta-like zinc finger Zn_ribbon_recom PF13408.1 gi|662859570|ref|YP_006350314.2| - 0.19 12.0 5.4 20 5.5 0.9 3.4 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain PyrI_C PF02748.10 gi|662859570|ref|YP_006350314.2| - 0.31 10.5 0.1 0.31 10.5 0.0 2.3 3 0 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain IBR PF01485.16 gi|662859570|ref|YP_006350314.2| - 0.35 10.7 11.1 38 4.2 7.7 2.9 1 1 0 1 1 1 0 IBR domain Prok-RING_1 PF14446.1 gi|662859570|ref|YP_006350314.2| - 0.38 10.5 8.7 0.67 9.7 0.8 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|662859570|ref|YP_006350314.2| - 0.47 10.1 11.1 3.5 7.3 0.1 3.9 3 1 0 3 3 3 0 Nudix N-terminal ADK_lid PF05191.9 gi|662859570|ref|YP_006350314.2| - 0.99 9.1 9.0 7.9 6.2 0.3 3.6 4 0 0 4 4 4 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|662859570|ref|YP_006350314.2| - 1.1 8.5 10.3 17 4.7 0.0 4.3 5 0 0 5 5 5 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|662859570|ref|YP_006350314.2| - 1.5 8.4 10.8 0.29 10.6 0.5 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|662859570|ref|YP_006350314.2| - 1.6 8.6 10.6 5.3 7.0 0.8 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme RRN7 PF11781.3 gi|662859570|ref|YP_006350314.2| - 2.4 7.7 13.6 4.1 6.9 0.0 4.1 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_5 PF13719.1 gi|662859570|ref|YP_006350314.2| - 2.6 7.6 9.0 6.4 6.4 0.1 3.2 4 0 0 4 4 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|662859570|ref|YP_006350314.2| - 2.7 7.5 11.0 26 4.4 0.0 4.2 5 0 0 5 5 5 0 zinc-ribbon domain zf-tcix PF14952.1 gi|662859570|ref|YP_006350314.2| - 3.2 7.1 7.3 1.4 8.2 0.3 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding ZZ PF00569.12 gi|662859570|ref|YP_006350314.2| - 4.5 6.9 10.3 1 8.9 0.1 3.3 3 1 0 3 3 3 0 Zinc finger, ZZ type HypA PF01155.14 gi|662859570|ref|YP_006350314.2| - 4.9 6.8 11.1 3.2e+02 1.0 7.7 2.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|662859570|ref|YP_006350314.2| - 7.1 6.5 13.1 39 4.1 0.0 3.9 3 1 1 4 4 4 0 YhfH-like protein zf-trcl PF13451.1 gi|662859570|ref|YP_006350314.2| - 9.1 6.0 11.4 2.8 7.6 0.1 3.6 3 1 1 4 4 4 0 Probable zinc-binding domain Cytochrom_CIII PF02085.11 gi|662859570|ref|YP_006350314.2| - 9.7 6.3 8.4 4.3 7.4 1.0 2.4 1 1 1 2 2 2 0 Class III cytochrome C family NOPS PF08075.6 gi|389848074|ref|YP_006350313.1| - 0.18 12.2 0.9 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 NOPS (NUC059) domain Baculo_PEP_C PF04513.7 gi|389848073|ref|YP_006350312.1| - 0.00018 21.3 0.4 0.07 12.9 0.2 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF869 PF05911.6 gi|389848073|ref|YP_006350312.1| - 0.0064 14.7 0.2 0.008 14.4 0.2 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) NPV_P10 PF05531.7 gi|389848073|ref|YP_006350312.1| - 0.0079 16.4 3.6 0.37 11.0 0.3 3.0 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|389848073|ref|YP_006350312.1| - 0.02 15.3 0.7 0.02 15.3 0.5 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) FH2 PF02181.18 gi|389848073|ref|YP_006350312.1| - 0.024 13.5 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Fes1 PF08609.5 gi|389848073|ref|YP_006350312.1| - 0.034 14.6 0.5 0.76 10.2 0.1 2.5 2 0 0 2 2 2 0 Nucleotide exchange factor Fes1 zf-C3HC4_3 PF13920.1 gi|389848073|ref|YP_006350312.1| - 0.052 13.2 0.5 0.079 12.6 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) V_ATPase_I PF01496.14 gi|389848073|ref|YP_006350312.1| - 0.055 11.3 0.0 0.058 11.2 0.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fib_alpha PF08702.5 gi|389848073|ref|YP_006350312.1| - 0.059 13.4 0.7 0.64 10.1 0.0 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HRDC PF00570.18 gi|389848073|ref|YP_006350312.1| - 0.075 12.7 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 HRDC domain T2SF PF00482.18 gi|389848073|ref|YP_006350312.1| - 0.13 12.1 1.8 0.17 11.7 0.5 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F DUF2450 PF10475.4 gi|389848073|ref|YP_006350312.1| - 0.18 10.6 0.3 0.25 10.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) IncA PF04156.9 gi|389848073|ref|YP_006350312.1| - 0.2 11.2 8.0 1.1 8.8 5.5 1.9 1 1 0 1 1 1 0 IncA protein Reo_sigmaC PF04582.7 gi|389848073|ref|YP_006350312.1| - 0.38 9.8 1.6 0.77 8.8 0.3 1.8 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Tropomyosin_1 PF12718.2 gi|389848073|ref|YP_006350312.1| - 0.42 10.4 12.0 3 7.6 0.0 2.5 2 1 1 3 3 2 0 Tropomyosin like DUF848 PF05852.6 gi|389848073|ref|YP_006350312.1| - 0.59 9.9 5.1 2.5 7.9 1.8 2.5 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Prefoldin PF02996.12 gi|389848073|ref|YP_006350312.1| - 1.1 8.9 3.6 4 7.1 0.2 2.7 1 1 2 3 3 3 0 Prefoldin subunit KaiC PF06745.8 gi|389848072|ref|YP_006350311.1| - 1.2e-08 34.3 0.0 0.00076 18.6 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|389848072|ref|YP_006350311.1| - 1.3e-06 27.9 0.3 0.025 13.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain GHMP_kinases_N PF00288.21 gi|389848071|ref|YP_006350310.1| - 4.8e-08 32.9 0.1 1e-07 31.8 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|389848071|ref|YP_006350310.1| - 1e-05 25.6 0.1 4.3e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal DUF4382 PF14321.1 gi|389848070|ref|YP_006350309.1| - 4.6e-24 85.0 0.1 4.6e-24 85.0 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|389848070|ref|YP_006350309.1| - 0.0013 18.5 1.8 0.0029 17.4 1.3 1.7 1 1 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TrkA_N PF02254.13 gi|389848069|ref|YP_006350308.1| - 5.9e-06 26.2 0.2 7e-06 26.0 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain UPRTase PF14681.1 gi|389848069|ref|YP_006350308.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GMP_synt_C PF00958.17 gi|389848068|ref|YP_006350307.1| - 6.4e-29 99.5 0.0 1.2e-28 98.6 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|389848068|ref|YP_006350307.1| - 1e-08 34.3 0.0 2.4e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|389848068|ref|YP_006350307.1| - 2.9e-05 22.8 0.0 0.00093 17.8 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|389848068|ref|YP_006350307.1| - 2.9e-05 23.6 0.1 0.00029 20.4 0.0 2.1 2 1 0 2 2 2 1 Asparagine synthase ThiI PF02568.9 gi|389848068|ref|YP_006350307.1| - 0.00044 19.7 0.0 0.001 18.5 0.0 1.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|389848068|ref|YP_006350307.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|389848068|ref|YP_006350307.1| - 0.064 12.5 0.0 0.16 11.2 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC CTP_synth_N PF06418.9 gi|389848067|ref|YP_006350306.1| - 1.1e-126 421.5 0.1 1.6e-126 421.0 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|389848067|ref|YP_006350306.1| - 3.7e-52 176.5 0.0 7.6e-52 175.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|389848067|ref|YP_006350306.1| - 4.5e-11 42.6 0.0 3e-10 39.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|389848067|ref|YP_006350306.1| - 8.6e-08 31.8 0.1 1.5e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Mac PF12464.3 gi|662859569|ref|YP_006350305.2| - 4.2e-24 84.3 1.4 1.5e-23 82.5 0.8 1.8 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep_2 PF14602.1 gi|662859569|ref|YP_006350305.2| - 3.7e-15 55.1 7.3 1.6e-11 43.5 1.6 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|662859569|ref|YP_006350305.2| - 1.1e-14 53.1 10.7 8.5e-11 40.8 2.1 2.7 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) MFS_3 PF05977.8 gi|389848065|ref|YP_006350304.1| - 1.2e-23 83.1 28.6 5.4e-13 47.8 7.2 2.0 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1 PF07690.11 gi|389848065|ref|YP_006350304.1| - 1.1e-13 50.6 40.8 1.2e-09 37.3 7.5 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Aldo_ket_red PF00248.16 gi|389848064|ref|YP_006350303.1| - 1.2e-61 207.9 0.0 1.5e-61 207.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family PEPcase PF00311.12 gi|662859568|ref|YP_006350302.2| - 2.9e-246 819.1 0.1 4.1e-246 818.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|662859568|ref|YP_006350302.2| - 0.00019 19.8 0.0 0.00039 18.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Rieske PF00355.21 gi|389848062|ref|YP_006350301.1| - 1.3e-06 27.8 0.1 2.4e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aldedh PF00171.17 gi|389848061|ref|YP_006350300.1| - 2.8e-152 507.2 0.0 3.4e-152 507.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ThiS PF02597.15 gi|389848060|ref|YP_006350299.1| - 3.6e-13 49.7 0.1 4.2e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|389848059|ref|YP_006350298.1| - 0.00011 21.7 0.3 0.00011 21.7 0.2 1.9 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.16 gi|389848058|ref|YP_006350297.1| - 7.7e-17 60.6 0.5 1.9e-14 52.9 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PTS-HPr PF00381.14 gi|389848058|ref|YP_006350297.1| - 0.062 13.1 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 PTS HPr component phosphorylation site 5TM-5TMR_LYT PF07694.7 gi|389848058|ref|YP_006350297.1| - 0.32 10.3 4.8 0.51 9.6 3.3 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.13 gi|389848057|ref|YP_006350296.1| - 1.5e-29 102.3 0.4 2.3e-29 101.7 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|389848057|ref|YP_006350296.1| - 2.4e-11 43.2 4.6 2.4e-11 43.2 3.2 2.5 3 1 0 3 3 3 1 Ion channel ADH_zinc_N PF00107.21 gi|389848057|ref|YP_006350296.1| - 0.0041 16.6 0.2 1 8.8 0.0 2.7 3 0 0 3 3 3 2 Zinc-binding dehydrogenase Ion_trans PF00520.26 gi|389848057|ref|YP_006350296.1| - 0.0044 16.3 2.1 0.0071 15.6 1.4 1.6 1 1 0 1 1 1 1 Ion transport protein NTP_transf_3 PF12804.2 gi|389848057|ref|YP_006350296.1| - 0.012 15.6 0.3 0.053 13.5 0.2 2.0 1 1 1 2 2 2 0 MobA-like NTP transferase domain Saccharop_dh PF03435.13 gi|389848057|ref|YP_006350296.1| - 0.015 14.3 0.1 0.024 13.6 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase OCD_Mu_crystall PF02423.10 gi|389848057|ref|YP_006350296.1| - 0.064 12.0 3.8 0.11 11.2 0.1 2.2 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family AAA_18 PF13238.1 gi|389848057|ref|YP_006350296.1| - 0.086 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Usp PF00582.21 gi|662859567|ref|YP_006350295.2| - 2.4e-08 34.2 8.2 0.0018 18.4 3.1 4.1 2 2 0 2 2 2 2 Universal stress protein family HPP PF04982.8 gi|662859567|ref|YP_006350295.2| - 4.1e-06 26.6 1.6 9.3e-06 25.4 1.1 1.6 1 0 0 1 1 1 1 HPP family PNP_UDP_1 PF01048.15 gi|389848055|ref|YP_006350294.1| - 2e-45 154.5 1.4 2.4e-45 154.3 1.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily VanZ PF04892.7 gi|389848054|ref|YP_006350293.1| - 0.071 13.0 1.1 0.084 12.8 0.1 1.6 2 0 0 2 2 2 0 VanZ like family Rhomboid PF01694.17 gi|662859566|ref|YP_006350292.2| - 1.2 9.1 6.1 0.39 10.7 1.5 2.1 2 1 0 2 2 2 0 Rhomboid family PfkB PF00294.19 gi|662859565|ref|YP_006350291.2| - 1.3e-54 185.4 5.4 1.5e-54 185.1 3.8 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|662859565|ref|YP_006350291.2| - 0.011 14.9 0.1 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase MEA1 PF06910.6 gi|662859565|ref|YP_006350291.2| - 0.016 14.8 0.2 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 Male enhanced antigen 1 (MEA1) DUF63 PF01889.12 gi|389848051|ref|YP_006350290.1| - 1e-19 71.7 6.0 1.4e-19 71.2 4.2 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.4 gi|389848050|ref|YP_006350289.1| - 1.4e-40 139.0 2.8 1.6e-40 138.8 1.9 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|389848050|ref|YP_006350289.1| - 0.22 10.4 1.2 0.77 8.6 0.1 2.0 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase Radical_SAM PF04055.16 gi|389848049|ref|YP_006350288.1| - 2e-25 89.8 0.2 4.1e-25 88.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|389848049|ref|YP_006350288.1| - 1.4e-19 69.7 0.1 3.1e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|389848049|ref|YP_006350288.1| - 5.6e-06 26.0 0.2 1e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 TRAM domain AlaDh_PNT_N PF05222.10 gi|389848049|ref|YP_006350288.1| - 0.015 15.3 0.2 0.043 13.8 0.1 1.8 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain Acetyltransf_1 PF00583.19 gi|389848048|ref|YP_006350287.1| - 1.8e-11 43.8 0.0 2.9e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|389848048|ref|YP_006350287.1| - 5.2e-10 39.3 0.0 7.2e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389848048|ref|YP_006350287.1| - 7e-07 29.1 0.0 1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389848048|ref|YP_006350287.1| - 3.1e-05 24.0 0.0 4.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389848048|ref|YP_006350287.1| - 0.00076 19.3 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|389848048|ref|YP_006350287.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848048|ref|YP_006350287.1| - 0.0027 17.4 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.1 gi|389848048|ref|YP_006350287.1| - 0.071 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Peptidase_S24 PF00717.18 gi|389848047|ref|YP_006350286.1| - 8.1e-05 22.1 0.2 0.00025 20.6 0.1 1.8 1 1 0 1 1 1 1 Peptidase S24-like Cation_efflux PF01545.16 gi|662859564|ref|YP_006350285.2| - 1.2e-54 185.2 0.4 1.4e-54 185.1 0.3 1.0 1 0 0 1 1 1 1 Cation efflux family HIT PF01230.18 gi|389848045|ref|YP_006350284.1| - 4.2e-13 49.6 0.0 6.4e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|389848045|ref|YP_006350284.1| - 2.9e-06 27.5 0.0 4.4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|389848045|ref|YP_006350284.1| - 2.2e-05 24.0 0.0 0.00013 21.5 0.0 2.0 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 RecR PF02132.10 gi|389848045|ref|YP_006350284.1| - 0.8 9.1 3.3 1.3 8.5 1.5 1.9 2 0 0 2 2 2 0 RecR protein Peptidase_M24 PF00557.19 gi|389848044|ref|YP_006350283.1| - 9.4e-44 149.4 0.5 1.1e-43 149.2 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.23 gi|389848043|ref|YP_006350282.1| - 3.4e-11 42.9 3.3 3e-10 39.8 2.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|389848043|ref|YP_006350282.1| - 6e-09 35.9 0.1 1.1e-08 35.0 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|389848043|ref|YP_006350282.1| - 0.0036 16.5 0.0 0.0085 15.2 0.0 1.6 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Abhydrolase_5 PF12695.2 gi|389848042|ref|YP_006350281.1| - 2.8e-15 56.3 0.0 3.5e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|389848042|ref|YP_006350281.1| - 7.4e-09 35.8 0.3 0.0032 17.3 0.2 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|389848042|ref|YP_006350281.1| - 8.5e-05 21.9 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|389848042|ref|YP_006350281.1| - 0.00086 18.5 0.0 0.26 10.4 0.0 2.3 1 1 1 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|389848042|ref|YP_006350281.1| - 0.0049 16.5 0.0 1.5 8.4 0.0 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DSBA PF01323.15 gi|389848041|ref|YP_006350280.1| - 3.8e-37 127.7 0.0 4.3e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|389848041|ref|YP_006350280.1| - 6.6e-09 35.9 0.3 5.1e-07 29.8 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|389848041|ref|YP_006350280.1| - 1.8e-06 28.1 0.1 0.00014 22.0 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|389848041|ref|YP_006350280.1| - 0.0032 17.2 0.0 0.062 13.1 0.0 2.5 3 0 0 3 3 3 1 Thioredoxin domain Asparaginase_2 PF01112.13 gi|389848040|ref|YP_006350279.1| - 1.9e-54 184.5 3.8 2.3e-54 184.2 2.6 1.1 1 0 0 1 1 1 1 Asparaginase Iso_dh PF00180.15 gi|389848039|ref|YP_006350278.1| - 3.9e-106 354.9 0.0 7.7e-106 353.9 0.0 1.4 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF3096 PF11295.3 gi|389848037|ref|YP_006350276.1| - 0.32 10.5 0.0 0.32 10.5 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3096) Zn-ribbon_8 PF09723.5 gi|389848036|ref|YP_006350275.1| - 0.045 13.7 1.2 0.1 12.5 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-Di19 PF05605.7 gi|389848036|ref|YP_006350275.1| - 0.047 13.8 0.1 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Pex14_N PF04695.8 gi|389848036|ref|YP_006350275.1| - 0.064 13.3 0.0 0.094 12.7 0.0 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region NMD3 PF04981.8 gi|389848036|ref|YP_006350275.1| - 0.12 11.5 0.1 0.18 10.8 0.1 1.3 1 0 0 1 1 1 0 NMD3 family FYDLN_acid PF09538.5 gi|389848036|ref|YP_006350275.1| - 0.38 11.3 2.7 0.27 11.8 0.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-RING_3 PF14369.1 gi|389848036|ref|YP_006350275.1| - 0.4 10.7 1.9 0.76 9.8 1.3 1.4 1 0 0 1 1 1 0 zinc-finger HMG-CoA_red PF00368.13 gi|389848035|ref|YP_006350274.1| - 1.2e-139 465.1 6.3 1.4e-139 464.9 4.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.6 gi|389848035|ref|YP_006350274.1| - 0.026 14.6 2.1 0.026 14.6 1.4 3.5 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1522) Urease_gamma PF00547.13 gi|389848035|ref|YP_006350274.1| - 0.11 12.5 0.5 1.5 8.8 0.1 2.5 2 0 0 2 2 2 0 Urease, gamma subunit Amidohydro_3 PF07969.6 gi|389848034|ref|YP_006350273.1| - 3.3e-77 260.3 8.3 3.9e-77 260.1 5.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|389848034|ref|YP_006350273.1| - 5.5e-13 48.5 0.6 1.9e-12 46.8 0.1 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|389848034|ref|YP_006350273.1| - 3.9e-09 36.6 1.0 0.0021 17.7 0.0 2.8 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|389848034|ref|YP_006350273.1| - 1.2e-06 28.7 17.6 2.1e-05 24.6 0.3 3.4 1 1 0 2 2 2 2 Amidohydrolase Urease_alpha PF00449.15 gi|389848034|ref|YP_006350273.1| - 0.033 14.3 0.3 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain NadA PF02445.11 gi|389848033|ref|YP_006350272.1| - 7.1e-95 317.2 0.0 8.4e-95 316.9 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|389848032|ref|YP_006350271.1| - 6.9e-78 262.3 6.5 1.2e-77 261.5 4.5 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|389848032|ref|YP_006350271.1| - 9.4e-12 45.2 0.0 3.1e-11 43.5 0.0 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389848032|ref|YP_006350271.1| - 1.4e-09 37.3 5.9 1.6e-07 30.5 4.0 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|389848032|ref|YP_006350271.1| - 1.2e-07 30.9 0.7 4.1e-05 22.6 0.5 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|389848032|ref|YP_006350271.1| - 1.1e-06 28.0 7.6 6.8e-06 25.4 5.2 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|389848032|ref|YP_006350271.1| - 1.2e-06 27.2 0.0 0.011 14.2 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|389848032|ref|YP_006350271.1| - 0.00097 18.2 0.0 0.0017 17.4 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|389848032|ref|YP_006350271.1| - 0.002 18.1 0.4 0.005 16.8 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Succ_DH_flav_C PF02910.15 gi|389848032|ref|YP_006350271.1| - 0.0067 16.2 0.1 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_3 PF13738.1 gi|389848032|ref|YP_006350271.1| - 0.01 15.9 0.1 0.11 12.5 0.1 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389848032|ref|YP_006350271.1| - 0.012 16.0 0.2 0.17 12.2 0.1 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|389848032|ref|YP_006350271.1| - 0.034 14.3 0.1 0.064 13.5 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|389848032|ref|YP_006350271.1| - 0.051 13.2 0.5 0.1 12.2 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|389848032|ref|YP_006350271.1| - 0.098 12.2 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain QRPTase_C PF01729.14 gi|389848031|ref|YP_006350270.1| - 7.5e-53 178.5 0.2 1.1e-52 178.0 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|389848031|ref|YP_006350270.1| - 6.8e-19 67.4 0.2 1.6e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain MFS_1 PF07690.11 gi|389848030|ref|YP_006350269.1| - 3.3e-21 75.3 40.3 2.8e-13 49.3 10.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|389848030|ref|YP_006350269.1| - 2.9e-05 23.7 1.1 0.0003 20.5 0.1 2.9 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|389848030|ref|YP_006350269.1| - 3.1e-05 22.7 14.2 0.00027 19.6 1.7 3.0 3 0 0 3 3 3 2 Sugar (and other) transporter OMPdecase PF00215.19 gi|389848029|ref|YP_006350268.1| - 1.5e-32 112.8 0.0 2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DnaJ PF00226.26 gi|389848028|ref|YP_006350267.1| - 6.3e-13 48.2 0.4 1.3e-12 47.2 0.0 1.6 2 0 0 2 2 2 1 DnaJ domain RPT PF13446.1 gi|389848028|ref|YP_006350267.1| - 0.066 12.6 0.0 0.1 12.0 0.0 1.4 1 1 0 1 1 1 0 A repeated domain in UCH-protein VirB3 PF05101.8 gi|389848028|ref|YP_006350267.1| - 0.14 12.1 3.0 0.069 13.1 0.7 1.5 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF3353 PF11833.3 gi|389848028|ref|YP_006350267.1| - 0.41 10.0 7.2 2 7.7 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) GTP_EFTU PF00009.22 gi|662859563|ref|YP_006350266.2| - 3.2e-35 121.2 0.0 5.3e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|662859563|ref|YP_006350266.2| - 2.8e-17 62.6 0.0 5.9e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|662859563|ref|YP_006350266.2| - 5.2e-10 39.2 0.4 1.6e-09 37.7 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|662859563|ref|YP_006350266.2| - 0.0015 18.1 0.2 0.0042 16.7 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|662859563|ref|YP_006350266.2| - 0.0032 17.4 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|662859563|ref|YP_006350266.2| - 0.051 13.1 0.7 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MCH PF02289.11 gi|389848025|ref|YP_006350264.1| - 9.7e-84 281.0 0.1 1.1e-83 280.8 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF77 PF01910.12 gi|389848024|ref|YP_006350263.1| - 2.4e-22 78.3 0.4 2.8e-22 78.1 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Pyridoxal_deC PF00282.14 gi|389848023|ref|YP_006350262.1| - 5.8e-76 255.3 0.0 7e-76 255.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|389848023|ref|YP_006350262.1| - 2e-07 30.4 0.0 3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|389848023|ref|YP_006350262.1| - 0.00026 19.5 0.0 0.011 14.1 0.0 2.1 2 0 0 2 2 2 2 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|389848023|ref|YP_006350262.1| - 0.0089 14.8 0.0 0.062 12.0 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|389848023|ref|YP_006350262.1| - 0.071 12.1 0.1 0.2 10.6 0.0 1.8 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Virul_fac_BrkB PF03631.10 gi|389848022|ref|YP_006350261.1| - 3.8e-39 134.6 23.6 4.5e-39 134.3 16.4 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ABC2_membrane_5 PF13346.1 gi|389848022|ref|YP_006350261.1| - 0.8 8.9 11.4 0.033 13.4 3.0 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein YqhR PF11085.3 gi|389848022|ref|YP_006350261.1| - 0.84 9.1 5.0 3.2 7.2 1.1 2.3 2 0 0 2 2 2 0 Conserved membrane protein YqhR HypA PF01155.14 gi|389848021|ref|YP_006350260.1| - 0.01 15.5 0.5 0.011 15.3 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-MYND PF01753.13 gi|389848021|ref|YP_006350260.1| - 0.046 13.5 0.8 0.082 12.7 0.5 1.4 1 0 0 1 1 1 0 MYND finger zf-B_box PF00643.19 gi|389848021|ref|YP_006350260.1| - 0.08 12.8 0.5 5.6 6.9 0.1 2.3 2 0 0 2 2 2 0 B-box zinc finger DZR PF12773.2 gi|389848021|ref|YP_006350260.1| - 0.19 11.5 2.1 0.5 10.2 1.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|389848021|ref|YP_006350260.1| - 2.8 7.8 6.1 6 6.8 0.2 2.4 2 1 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|389848021|ref|YP_006350260.1| - 4.4 7.3 7.5 1.9 8.5 2.6 2.3 2 1 0 2 2 2 0 Zinc ribbon domain FixQ PF05545.6 gi|389848019|ref|YP_006350258.1| - 0.022 14.3 4.0 0.25 10.9 0.4 2.3 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Ni_hydr_CYTB PF01292.15 gi|389848019|ref|YP_006350258.1| - 0.067 12.5 2.7 0.09 12.1 1.9 1.3 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Cation_efflux PF01545.16 gi|389848019|ref|YP_006350258.1| - 0.074 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Cation efflux family CcoS PF03597.10 gi|389848019|ref|YP_006350258.1| - 0.1 12.0 1.8 0.4 10.1 0.0 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type DUF4381 PF14316.1 gi|389848019|ref|YP_006350258.1| - 0.2 11.7 1.1 0.61 10.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF4234 PF14018.1 gi|389848019|ref|YP_006350258.1| - 0.55 10.0 7.7 1.2 8.9 5.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DUF4131 PF13567.1 gi|389848019|ref|YP_006350258.1| - 1 8.7 7.7 12 5.2 5.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SKG6 PF08693.5 gi|389848019|ref|YP_006350258.1| - 5.2 6.4 5.5 1.2 8.4 1.4 1.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF202 PF02656.10 gi|389848019|ref|YP_006350258.1| - 6.4 7.0 8.6 24 5.2 5.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) VPEP PF07589.6 gi|389848019|ref|YP_006350258.1| - 9.8 6.2 6.6 1.7 8.6 0.9 2.4 2 0 0 2 2 2 0 PEP-CTERM motif Methyltrn_RNA_3 PF02598.12 gi|389848018|ref|YP_006350257.1| - 7.6e-49 166.6 0.0 8.7e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.14 gi|389848018|ref|YP_006350257.1| - 0.16 11.3 0.3 1.4 8.3 0.1 2.4 2 1 0 2 2 2 0 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.17 gi|662859561|ref|YP_006350256.2| - 9.3e-87 290.7 0.0 2e-86 289.6 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|389848016|ref|YP_006350255.1| - 3.8e-42 143.8 0.1 4.3e-42 143.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|389848015|ref|YP_006350254.1| - 4.5e-21 74.5 2.6 6.9e-21 74.0 1.8 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.13 gi|389848014|ref|YP_006350253.1| - 3.5e-48 162.6 0.8 4.9e-48 162.2 0.5 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|389848014|ref|YP_006350253.1| - 7.2e-16 57.9 0.0 3.5e-15 55.7 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|389848013|ref|YP_006350252.1| - 6.3e-29 99.4 0.1 8.5e-29 99.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|389848013|ref|YP_006350252.1| - 0.017 13.8 0.2 0.021 13.5 0.1 1.2 1 1 0 1 1 1 0 Citrate synthase Ribosomal_L22 PF00237.14 gi|389848012|ref|YP_006350251.1| - 5.3e-25 87.3 0.0 6.2e-25 87.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.1 gi|389848012|ref|YP_006350251.1| - 0.061 12.5 0.0 0.078 12.1 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain KH_2 PF07650.12 gi|389848011|ref|YP_006350250.1| - 4.4e-16 58.2 0.0 9.5e-16 57.1 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|389848011|ref|YP_006350250.1| - 2.5e-15 56.4 0.2 3.9e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|389848011|ref|YP_006350250.1| - 0.0009 18.8 2.0 0.0015 18.1 0.1 2.4 3 0 0 3 3 3 1 KH domain KH_5 PF13184.1 gi|389848011|ref|YP_006350250.1| - 0.0079 15.9 0.0 0.046 13.5 0.0 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_3 PF13014.1 gi|389848011|ref|YP_006350250.1| - 0.031 13.9 2.5 0.05 13.2 0.6 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|389848010|ref|YP_006350249.1| - 1.2e-17 63.3 0.1 1.4e-17 63.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.11 gi|389848009|ref|YP_006350248.1| - 2.1e-26 91.3 0.0 2.8e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|389848008|ref|YP_006350247.1| - 3.3e-27 94.3 1.6 4.1e-27 94.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|389848007|ref|YP_006350246.1| - 3.3e-37 126.9 0.2 3.7e-37 126.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TRAM PF01938.15 gi|389848007|ref|YP_006350246.1| - 0.063 13.0 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 TRAM domain KOW PF00467.24 gi|389848006|ref|YP_006350245.1| - 9.7e-08 31.4 0.6 1.6e-07 30.7 0.1 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.15 gi|389848005|ref|YP_006350244.1| - 3.4e-25 87.5 0.0 7.7e-25 86.3 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|389848005|ref|YP_006350244.1| - 2.2e-12 46.6 0.3 4.6e-12 45.5 0.2 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|389848005|ref|YP_006350244.1| - 0.00062 19.1 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|389848005|ref|YP_006350244.1| - 0.002 17.7 0.3 0.002 17.7 0.2 2.5 3 0 0 3 3 3 1 KOW motif Pro_Al_protease PF02983.9 gi|389848005|ref|YP_006350244.1| - 0.059 13.3 1.7 14 5.6 0.0 3.3 3 0 0 3 3 3 0 Alpha-lytic protease prodomain Ribosomal_L5_C PF00673.16 gi|389848004|ref|YP_006350243.1| - 1e-22 79.6 0.0 1.6e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|389848004|ref|YP_006350243.1| - 5.3e-15 54.9 0.0 1.4e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|389848003|ref|YP_006350242.1| - 2.5e-17 61.9 4.9 2.9e-17 61.7 3.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|389848003|ref|YP_006350242.1| - 0.0016 18.1 0.2 0.0018 17.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2616 PF11077.3 gi|389848003|ref|YP_006350242.1| - 0.041 13.3 0.5 0.039 13.4 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) RNA_POL_M_15KD PF02150.11 gi|389848003|ref|YP_006350242.1| - 0.36 10.5 3.4 1.7 8.3 0.4 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|389848003|ref|YP_006350242.1| - 0.37 10.6 2.8 3.5 7.5 2.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S8 PF00410.14 gi|389848002|ref|YP_006350241.1| - 5e-23 81.3 0.0 6.9e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|389848001|ref|YP_006350240.1| - 8e-24 83.9 0.1 1.7e-11 44.4 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 OspE PF02471.12 gi|389848001|ref|YP_006350240.1| - 0.049 13.5 0.1 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 Borrelia outer surface protein E BON PF04972.12 gi|389848001|ref|YP_006350240.1| - 0.059 13.1 0.2 4.5 7.1 0.0 3.1 3 0 0 3 3 3 0 BON domain Ribosomal_L32e PF01655.13 gi|389848000|ref|YP_006350239.1| - 4e-35 120.1 0.5 8.2e-35 119.1 0.2 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|389848000|ref|YP_006350239.1| - 2.5e-14 53.1 7.5 8.4e-13 48.2 0.6 2.9 3 1 0 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|389848000|ref|YP_006350239.1| - 8.4e-09 34.6 0.7 0.0022 17.5 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|389848000|ref|YP_006350239.1| - 7.6e-07 28.5 0.0 2.5e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|389848000|ref|YP_006350239.1| - 3.3e-06 26.8 0.4 3.3e-06 26.8 0.2 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|389848000|ref|YP_006350239.1| - 0.00075 19.4 0.6 0.2 11.6 0.0 3.1 2 1 1 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|389848000|ref|YP_006350239.1| - 0.0014 18.4 0.0 0.005 16.7 0.0 1.9 2 1 0 2 2 2 1 Pathogenicity locus HHH_8 PF14716.1 gi|389848000|ref|YP_006350239.1| - 0.0066 16.6 0.2 0.71 10.1 0.0 2.8 1 1 1 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|389848000|ref|YP_006350239.1| - 0.088 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Ribosomal_L19e PF01280.15 gi|389847999|ref|YP_006350238.1| - 1.3e-56 190.5 9.8 1.4e-56 190.3 6.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|389847999|ref|YP_006350238.1| - 0.064 12.7 1.8 0.12 11.8 0.4 2.1 2 0 0 2 2 2 0 Short C-terminal domain Ribosomal_L18p PF00861.17 gi|389847998|ref|YP_006350237.1| - 3.8e-34 117.4 0.0 4.7e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|662859560|ref|YP_006350236.2| - 5.6e-26 90.0 1.0 1.3e-25 88.8 0.7 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|662859560|ref|YP_006350236.2| - 1.9e-23 81.5 0.1 2.9e-23 80.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|389847996|ref|YP_006350235.1| - 1.3e-15 56.7 0.0 2.1e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e OHCU_decarbox PF09349.5 gi|389847996|ref|YP_006350235.1| - 0.085 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 OHCU decarboxylase Ribosomal_L18e PF00828.14 gi|389847995|ref|YP_006350234.1| - 4.3e-24 85.3 0.5 4.3e-24 85.3 0.3 1.7 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|389847994|ref|YP_006350233.1| - 1e-92 310.7 17.2 1.2e-92 310.5 11.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|389847994|ref|YP_006350233.1| - 1.2e-11 43.8 2.4 1.4e-11 43.6 0.3 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p PCMT PF01135.14 gi|389847993|ref|YP_006350232.1| - 3.7e-63 212.8 0.0 4.5e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|389847993|ref|YP_006350232.1| - 2.3e-07 30.1 0.0 4.8e-07 29.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|389847993|ref|YP_006350232.1| - 3.9e-07 30.1 0.1 8.1e-07 29.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389847993|ref|YP_006350232.1| - 5.3e-07 30.2 0.0 8.5e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847993|ref|YP_006350232.1| - 5.7e-06 25.9 0.0 8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|389847993|ref|YP_006350232.1| - 0.00012 21.7 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.1 gi|389847993|ref|YP_006350232.1| - 0.00057 19.6 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.7 gi|389847993|ref|YP_006350232.1| - 0.0021 17.6 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|389847993|ref|YP_006350232.1| - 0.0026 16.8 0.0 0.0044 16.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|389847993|ref|YP_006350232.1| - 0.013 15.9 0.0 0.026 15.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|389847993|ref|YP_006350232.1| - 0.017 14.4 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|389847993|ref|YP_006350232.1| - 0.058 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|389847993|ref|YP_006350232.1| - 0.11 13.3 0.0 0.21 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2292 PF10055.4 gi|389847993|ref|YP_006350232.1| - 0.11 11.8 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized small protein (DUF2292) CMAS PF02353.15 gi|389847993|ref|YP_006350232.1| - 0.15 11.1 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Creatinase_N PF01321.13 gi|389847992|ref|YP_006350231.1| - 0.061 13.8 0.0 0.2 12.1 0.0 1.7 1 1 1 2 2 2 0 Creatinase/Prolidase N-terminal domain Abhydrolase_6 PF12697.2 gi|389847990|ref|YP_006350229.1| - 2.8e-25 89.5 6.7 3.8e-25 89.1 4.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389847990|ref|YP_006350229.1| - 6.6e-19 68.1 0.1 2e-18 66.5 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|389847990|ref|YP_006350229.1| - 3e-07 29.9 0.0 0.00088 18.6 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|389847990|ref|YP_006350229.1| - 2.1e-06 27.1 0.3 0.00094 18.4 0.1 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|389847990|ref|YP_006350229.1| - 3e-06 26.9 0.5 7.8e-05 22.3 0.3 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|389847990|ref|YP_006350229.1| - 5.5e-05 22.7 0.0 0.00023 20.6 0.0 1.8 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|389847990|ref|YP_006350229.1| - 0.0042 15.6 0.1 0.14 10.6 0.0 2.7 2 1 1 3 3 3 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.3 gi|389847990|ref|YP_006350229.1| - 0.0044 16.8 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase FSH1 PF03959.8 gi|389847990|ref|YP_006350229.1| - 0.021 14.2 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.5 gi|389847990|ref|YP_006350229.1| - 0.036 13.9 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein ResB PF05140.9 gi|389847989|ref|YP_006350228.1| - 0.022 13.2 0.1 0.067 11.7 0.0 1.7 2 0 0 2 2 2 0 ResB-like family SCP2 PF02036.12 gi|389847989|ref|YP_006350228.1| - 0.043 14.0 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 SCP-2 sterol transfer family Methyltransf_18 PF12847.2 gi|389847988|ref|YP_006350227.1| - 5.2e-16 59.2 0.0 7.8e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389847988|ref|YP_006350227.1| - 8.2e-16 58.2 0.0 1.2e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389847988|ref|YP_006350227.1| - 2.3e-15 56.7 0.1 3.5e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847988|ref|YP_006350227.1| - 3.1e-14 52.8 0.0 3.9e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|389847988|ref|YP_006350227.1| - 3.7e-14 52.6 0.0 5.3e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.7 gi|389847988|ref|YP_006350227.1| - 2.4e-12 47.1 0.0 3.2e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|389847988|ref|YP_006350227.1| - 3e-10 40.0 0.0 3.8e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|389847988|ref|YP_006350227.1| - 4.9e-10 39.4 0.1 6.3e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|389847988|ref|YP_006350227.1| - 3e-07 29.9 0.0 3.9e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|389847988|ref|YP_006350227.1| - 4.3e-05 22.7 0.0 5.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|389847988|ref|YP_006350227.1| - 7.2e-05 22.2 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|389847988|ref|YP_006350227.1| - 0.00026 20.2 0.0 0.00028 20.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|389847988|ref|YP_006350227.1| - 0.0006 19.0 0.0 0.00079 18.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|389847988|ref|YP_006350227.1| - 0.0039 16.7 0.0 0.005 16.4 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|389847988|ref|YP_006350227.1| - 0.047 12.8 0.0 0.063 12.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|389847988|ref|YP_006350227.1| - 0.079 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|389847988|ref|YP_006350227.1| - 0.13 11.2 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase FmrO PF07091.6 gi|389847988|ref|YP_006350227.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Saccharop_dh_N PF04455.7 gi|389847987|ref|YP_006350226.1| - 2.2e-36 124.1 0.1 4.3e-36 123.1 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|389847987|ref|YP_006350226.1| - 0.00028 20.6 0.1 0.012 15.3 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Myco_19_kDa PF05481.7 gi|389847986|ref|YP_006350225.1| - 4.7 6.9 11.8 0.19 11.5 1.6 2.5 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Usp PF00582.21 gi|662859559|ref|YP_006350224.2| - 8e-15 55.2 0.1 1e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family CARDB PF07705.6 gi|389847984|ref|YP_006350223.1| - 9.1e-07 28.8 0.7 0.00039 20.4 0.0 2.6 2 1 0 2 2 2 2 CARDB GPI-anchored PF10342.4 gi|389847984|ref|YP_006350223.1| - 0.018 15.4 1.0 1.9 9.0 0.1 2.9 2 1 1 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family VirE3 PF06661.6 gi|389847984|ref|YP_006350223.1| - 0.15 11.1 0.1 0.22 10.6 0.1 1.1 1 0 0 1 1 1 0 VirE3 Host_attach PF10116.4 gi|389847983|ref|YP_006350222.1| - 0.024 14.8 0.0 0.029 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein required for attachment to host cells DUF1469 PF07332.6 gi|389847983|ref|YP_006350222.1| - 0.031 14.0 1.5 0.045 13.4 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1980 PF09323.5 gi|389847983|ref|YP_006350222.1| - 0.037 13.7 0.3 0.055 13.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DUF1622 PF07784.6 gi|389847983|ref|YP_006350222.1| - 0.1 12.2 0.1 0.19 11.3 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1622) Cytochrom_B_N PF00033.14 gi|389847982|ref|YP_006350221.1| - 0.046 13.0 1.2 0.049 12.9 0.9 1.0 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Zip PF02535.17 gi|389847981|ref|YP_006350220.1| - 4.2e-05 22.7 4.4 4.2e-05 22.7 3.0 2.2 2 0 0 2 2 2 1 ZIP Zinc transporter DUF2956 PF11169.3 gi|389847981|ref|YP_006350220.1| - 0.15 12.0 0.9 0.24 11.3 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) adh_short PF00106.20 gi|389847980|ref|YP_006350219.1| - 9e-26 90.7 5.4 1.1e-25 90.4 3.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389847980|ref|YP_006350219.1| - 9.6e-18 64.8 0.0 1.2e-17 64.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|389847980|ref|YP_006350219.1| - 1.2e-11 44.6 3.1 1.5e-11 44.3 2.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389847980|ref|YP_006350219.1| - 2.5e-06 27.1 0.2 2e-05 24.1 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|389847980|ref|YP_006350219.1| - 7.5e-05 21.7 0.0 0.0011 17.9 0.0 2.4 2 1 1 3 3 3 1 Male sterility protein Eno-Rase_NADH_b PF12242.3 gi|389847980|ref|YP_006350219.1| - 0.00053 19.7 0.6 0.0015 18.2 0.4 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|389847980|ref|YP_006350219.1| - 0.00077 19.5 5.9 0.0047 16.9 4.1 1.9 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|389847980|ref|YP_006350219.1| - 0.045 12.8 0.1 0.094 11.7 0.0 1.6 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.12 gi|389847980|ref|YP_006350219.1| - 0.059 12.2 0.1 0.36 9.6 0.1 1.9 2 0 0 2 2 2 0 RmlD substrate binding domain NmrA PF05368.8 gi|389847980|ref|YP_006350219.1| - 0.09 12.0 0.3 0.32 10.2 0.3 1.8 1 1 1 2 2 2 0 NmrA-like family 3HCDH_N PF02737.13 gi|389847980|ref|YP_006350219.1| - 0.22 11.1 0.8 0.41 10.2 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|389847979|ref|YP_006350218.1| - 8.5e-27 94.3 0.1 2.9e-26 92.5 0.0 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|389847979|ref|YP_006350218.1| - 8.7e-18 64.1 0.1 2.4e-17 62.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|389847979|ref|YP_006350218.1| - 5.9e-17 61.6 0.2 5.5e-09 35.3 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|389847979|ref|YP_006350218.1| - 3e-09 37.1 0.4 1.3e-06 28.6 0.1 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389847979|ref|YP_006350218.1| - 8.2e-08 31.1 0.0 0.00046 18.7 0.2 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|389847979|ref|YP_006350218.1| - 5.2e-07 29.9 0.0 0.0016 18.5 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|389847979|ref|YP_006350218.1| - 8.3e-07 29.0 0.0 2.4e-05 24.2 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|389847979|ref|YP_006350218.1| - 1.8e-06 27.0 1.3 3.8e-06 26.0 0.4 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|389847979|ref|YP_006350218.1| - 2.9e-05 23.3 0.1 4.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|389847979|ref|YP_006350218.1| - 0.00032 19.8 0.2 0.00051 19.2 0.2 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|389847979|ref|YP_006350218.1| - 0.00041 19.5 0.1 0.0006 18.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|389847979|ref|YP_006350218.1| - 0.002 17.0 0.4 0.0035 16.2 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|389847979|ref|YP_006350218.1| - 0.003 17.3 0.1 1.3 8.8 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Strep_67kDa_ant PF06100.6 gi|389847979|ref|YP_006350218.1| - 0.012 13.9 0.0 0.017 13.5 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_7 PF13241.1 gi|389847979|ref|YP_006350218.1| - 0.031 14.5 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|389847979|ref|YP_006350218.1| - 0.035 13.4 0.2 0.058 12.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|389847979|ref|YP_006350218.1| - 0.064 11.8 0.2 0.1 11.2 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|389847979|ref|YP_006350218.1| - 0.075 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|389847979|ref|YP_006350218.1| - 0.11 11.8 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UbiA PF01040.13 gi|389847978|ref|YP_006350217.1| - 2.3e-30 105.6 23.1 3.1e-30 105.2 16.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|389847977|ref|YP_006350216.1| - 2.2e-70 236.4 19.4 2.7e-70 236.1 13.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) SQS_PSY PF00494.14 gi|389847976|ref|YP_006350215.1| - 1.5e-63 214.5 6.5 1.9e-63 214.2 4.5 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase zf-Mss51 PF13824.1 gi|389847975|ref|YP_006350214.1| - 0.14 12.0 6.9 0.2 11.5 4.8 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.6 gi|389847975|ref|YP_006350214.1| - 0.52 10.4 0.5 0.52 10.4 0.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) HTH_5 PF01022.15 gi|389847974|ref|YP_006350213.1| - 3.2e-09 36.3 0.0 5.2e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389847974|ref|YP_006350213.1| - 3.4e-09 36.3 0.1 6.2e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389847974|ref|YP_006350213.1| - 0.00038 20.0 0.0 0.00076 19.0 0.0 1.6 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|389847974|ref|YP_006350213.1| - 0.0012 18.4 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389847974|ref|YP_006350213.1| - 0.0031 16.8 0.0 0.0057 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|389847974|ref|YP_006350213.1| - 0.012 15.1 0.0 0.015 14.8 0.0 1.3 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_45 PF14947.1 gi|389847974|ref|YP_006350213.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.5 gi|389847974|ref|YP_006350213.1| - 0.022 14.4 0.1 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|389847974|ref|YP_006350213.1| - 0.029 13.8 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|389847974|ref|YP_006350213.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|389847974|ref|YP_006350213.1| - 0.038 13.6 0.0 0.086 12.5 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_29 PF13551.1 gi|389847974|ref|YP_006350213.1| - 0.079 13.1 0.0 0.091 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Peptidase_M50B PF13398.1 gi|389847973|ref|YP_006350212.1| - 0.86 8.9 8.8 1.1 8.6 6.0 1.4 1 1 0 1 1 1 0 Peptidase M50B-like MrpF_PhaF PF04066.8 gi|389847973|ref|YP_006350212.1| - 1.3 9.3 7.7 0.15 12.3 1.9 1.9 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Spond_N PF06468.8 gi|389847972|ref|YP_006350211.1| - 7.2e-16 58.4 0.0 9.6e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Spondin_N TAT_signal PF10518.4 gi|389847972|ref|YP_006350211.1| - 1.3 9.2 5.0 3.3 7.9 3.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TraB PF01963.12 gi|389847970|ref|YP_006350209.1| - 7.2e-06 25.6 0.0 0.003 17.0 0.0 2.3 2 0 0 2 2 2 2 TraB family HTH_20 PF12840.2 gi|389847967|ref|YP_006350206.1| - 4.3e-07 29.6 0.0 1.9e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Lar_restr_allev PF14354.1 gi|389847967|ref|YP_006350206.1| - 0.077 13.3 2.7 3.6 7.9 0.2 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar IBR PF01485.16 gi|389847967|ref|YP_006350206.1| - 0.089 12.6 1.7 4.8 7.1 0.1 2.3 2 0 0 2 2 2 0 IBR domain DZR PF12773.2 gi|389847967|ref|YP_006350206.1| - 0.098 12.4 6.6 0.88 9.4 0.1 2.4 2 1 0 2 2 2 0 Double zinc ribbon Elf1 PF05129.8 gi|389847967|ref|YP_006350206.1| - 0.19 11.4 2.0 2.7 7.7 0.0 2.6 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|389847967|ref|YP_006350206.1| - 0.41 10.6 7.9 3.1 7.8 0.1 3.7 4 0 0 4 4 4 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|389847967|ref|YP_006350206.1| - 0.5 9.5 6.8 1.2 8.3 0.8 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|389847967|ref|YP_006350206.1| - 0.85 9.3 4.1 6.1 6.5 0.3 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|389847967|ref|YP_006350206.1| - 4.8 6.7 6.8 30 4.2 0.0 3.2 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DnaJ_CXXCXGXG PF00684.14 gi|389847967|ref|YP_006350206.1| - 5.4 7.1 6.3 7.8 6.6 0.3 2.5 2 1 0 2 2 2 0 DnaJ central domain DNA_ligase_ZBD PF03119.11 gi|389847967|ref|YP_006350206.1| - 9 6.1 8.8 18 5.1 0.1 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Peptidase_M23 PF01551.17 gi|389847966|ref|YP_006350205.1| - 7.2e-19 67.6 0.1 1.7e-18 66.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 Pyridox_ox_2 PF12900.2 gi|389847965|ref|YP_006350204.1| - 1.7e-18 66.8 0.0 1.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|389847965|ref|YP_006350204.1| - 4.3e-05 23.4 0.0 5.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF3410 PF11890.3 gi|389847964|ref|YP_006350203.1| - 0.042 13.4 0.2 0.042 13.4 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3410) bPH_3 PF14470.1 gi|389847962|ref|YP_006350201.1| - 0.0098 16.1 0.0 0.032 14.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial PH domain DUF2688 PF10892.3 gi|389847961|ref|YP_006350200.1| - 0.11 12.2 0.2 0.27 10.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) SNARE_assoc PF09335.6 gi|389847960|ref|YP_006350199.1| - 7.4e-11 42.3 6.3 7.4e-11 42.3 4.4 2.1 1 1 1 2 2 2 1 SNARE associated Golgi protein HEV_ORF1 PF02444.11 gi|389847960|ref|YP_006350199.1| - 0.4 10.8 0.1 0.4 10.8 0.1 2.8 2 1 1 3 3 3 0 Hepatitis E virus ORF-2 (Putative capsid protein) iPGM_N PF06415.8 gi|389847959|ref|YP_006350198.1| - 5.5e-79 264.6 0.0 7.7e-79 264.1 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|389847959|ref|YP_006350198.1| - 1.5e-72 244.0 0.0 9.7e-72 241.3 0.0 1.8 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|389847959|ref|YP_006350198.1| - 6.5e-09 35.5 0.1 1.3e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|389847959|ref|YP_006350198.1| - 7.6e-05 22.4 0.1 0.00021 20.9 0.0 1.8 2 0 0 2 2 2 1 PglZ domain Sulfatase PF00884.18 gi|389847959|ref|YP_006350198.1| - 0.003 16.8 0.8 0.019 14.1 0.5 2.3 1 1 0 1 1 1 1 Sulfatase DUF1405 PF07187.6 gi|662859558|ref|YP_006350197.2| - 1.1e-39 135.7 9.6 1.4e-39 135.4 6.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HTH_5 PF01022.15 gi|389847957|ref|YP_006350196.1| - 1.1e-21 76.1 0.8 5e-16 58.1 0.1 3.0 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389847957|ref|YP_006350196.1| - 2.3e-17 62.5 0.6 5.9e-14 51.6 0.1 2.6 3 0 0 3 3 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|389847957|ref|YP_006350196.1| - 2.3e-12 46.3 0.7 4.6e-09 35.8 0.1 3.1 3 0 0 3 3 3 1 MarR family MarR PF01047.17 gi|389847957|ref|YP_006350196.1| - 6.7e-11 41.7 0.0 1.2e-07 31.3 0.1 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|389847957|ref|YP_006350196.1| - 1.8e-10 40.3 0.0 1.2e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389847957|ref|YP_006350196.1| - 5.9e-10 38.3 0.1 2.1e-09 36.5 0.0 2.0 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|389847957|ref|YP_006350196.1| - 1.1e-08 35.2 0.1 1.3e-05 25.4 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|389847957|ref|YP_006350196.1| - 2.2e-07 30.6 0.0 0.00019 21.2 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|389847957|ref|YP_006350196.1| - 8e-07 29.1 0.0 0.002 18.2 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.7 gi|389847957|ref|YP_006350196.1| - 4.3e-06 26.2 0.1 1.3e-05 24.7 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|389847957|ref|YP_006350196.1| - 9.4e-06 25.3 0.0 0.00072 19.2 0.0 2.9 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.6 gi|389847957|ref|YP_006350196.1| - 5.9e-05 22.3 0.0 0.00022 20.5 0.0 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_23 PF13384.1 gi|389847957|ref|YP_006350196.1| - 0.00013 21.4 0.0 0.0099 15.5 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain DUF4423 PF14394.1 gi|389847957|ref|YP_006350196.1| - 0.00018 21.1 0.0 0.45 10.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) PadR PF03551.9 gi|389847957|ref|YP_006350196.1| - 0.00024 20.8 0.1 0.003 17.2 0.0 2.7 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family ArsR PF09824.4 gi|389847957|ref|YP_006350196.1| - 0.00028 20.2 0.0 0.034 13.4 0.0 2.4 2 1 0 2 2 2 1 ArsR transcriptional regulator Sulfolobus_pRN PF05584.6 gi|389847957|ref|YP_006350196.1| - 0.0003 20.6 0.0 0.13 12.2 0.0 2.5 3 0 0 3 3 2 1 Sulfolobus plasmid regulatory protein HTH_IclR PF09339.5 gi|389847957|ref|YP_006350196.1| - 0.00084 18.8 0.7 0.92 9.1 0.0 3.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|389847957|ref|YP_006350196.1| - 0.001 18.5 0.0 0.014 14.9 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|389847957|ref|YP_006350196.1| - 0.0011 18.0 0.0 1.6 7.9 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|389847957|ref|YP_006350196.1| - 0.0012 18.9 0.1 0.64 10.1 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.7 gi|389847957|ref|YP_006350196.1| - 0.0015 18.0 0.0 0.0083 15.6 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain GntR PF00392.16 gi|389847957|ref|YP_006350196.1| - 0.0018 17.6 0.0 0.63 9.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|389847957|ref|YP_006350196.1| - 0.0022 17.8 0.0 0.068 13.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|389847957|ref|YP_006350196.1| - 0.0034 17.4 0.0 0.02 15.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|389847957|ref|YP_006350196.1| - 0.0039 17.2 0.0 0.019 15.0 0.0 1.9 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_45 PF14947.1 gi|389847957|ref|YP_006350196.1| - 0.0046 16.7 0.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix IF2_N PF04760.10 gi|389847957|ref|YP_006350196.1| - 0.005 16.4 0.0 1.1 8.9 0.0 3.2 4 0 0 4 4 3 1 Translation initiation factor IF-2, N-terminal region DDRGK PF09756.4 gi|389847957|ref|YP_006350196.1| - 0.0086 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 DDRGK domain HTH_28 PF13518.1 gi|389847957|ref|YP_006350196.1| - 0.0093 15.9 0.2 0.54 10.3 0.1 2.9 3 0 0 3 3 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|389847957|ref|YP_006350196.1| - 0.011 15.3 0.0 0.082 12.5 0.0 2.2 2 0 0 2 2 2 0 HxlR-like helix-turn-helix TFIIE_alpha PF02002.12 gi|389847957|ref|YP_006350196.1| - 0.014 14.8 0.0 0.5 9.8 0.0 2.3 2 1 0 2 2 2 0 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|389847957|ref|YP_006350196.1| - 0.015 15.1 0.0 0.078 12.8 0.0 2.0 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|389847957|ref|YP_006350196.1| - 0.015 15.3 0.0 0.053 13.5 0.0 1.9 3 0 0 3 3 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|389847957|ref|YP_006350196.1| - 0.023 14.2 0.6 0.35 10.4 0.0 3.2 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain DUF742 PF05331.6 gi|389847957|ref|YP_006350196.1| - 0.035 13.7 0.0 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) MerR PF00376.18 gi|389847957|ref|YP_006350196.1| - 0.042 13.4 0.2 0.52 9.9 0.1 2.7 2 1 0 2 2 1 0 MerR family regulatory protein HTH_DeoR PF08220.7 gi|389847957|ref|YP_006350196.1| - 0.049 13.1 0.2 0.14 11.7 0.0 1.9 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain DUF2089 PF09862.4 gi|389847957|ref|YP_006350196.1| - 0.066 13.0 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) EAP30 PF04157.11 gi|389847957|ref|YP_006350196.1| - 0.088 11.9 0.0 14 4.8 0.0 2.6 2 1 0 2 2 2 0 EAP30/Vps36 family FeoC PF09012.5 gi|389847957|ref|YP_006350196.1| - 0.12 12.0 0.0 4.9 6.9 0.0 2.5 2 0 0 2 2 2 0 FeoC like transcriptional regulator Cdc6_C PF09079.6 gi|389847957|ref|YP_006350196.1| - 0.13 11.9 0.1 0.64 9.7 0.0 2.1 2 0 0 2 2 2 0 CDC6, C terminal FaeA PF04703.7 gi|389847957|ref|YP_006350196.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein PLDc_N PF13396.1 gi|389847955|ref|YP_006350194.1| - 1.3e-06 28.0 7.7 1.3e-06 28.0 5.4 1.9 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal FixQ PF05545.6 gi|389847955|ref|YP_006350194.1| - 0.0079 15.8 13.1 0.05 13.2 1.4 2.4 1 1 1 2 2 2 2 Cbb3-type cytochrome oxidase component FixQ Bax1-I PF01027.15 gi|389847955|ref|YP_006350194.1| - 0.017 14.7 6.0 0.016 14.7 4.2 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Glucos_trans_II PF14264.1 gi|389847955|ref|YP_006350194.1| - 0.018 14.0 4.2 0.018 14.0 2.9 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF1980 PF09323.5 gi|389847955|ref|YP_006350194.1| - 0.025 14.3 0.9 0.03 14.0 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DUF2306 PF10067.4 gi|389847955|ref|YP_006350194.1| - 0.036 14.1 2.0 0.041 13.9 1.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) COX15-CtaA PF02628.10 gi|389847955|ref|YP_006350194.1| - 0.042 12.7 2.7 0.05 12.4 1.9 1.0 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein DUF4153 PF13687.1 gi|389847955|ref|YP_006350194.1| - 0.046 13.2 3.7 0.054 13.0 2.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4153) DUF2976 PF11190.3 gi|389847955|ref|YP_006350194.1| - 0.12 11.9 1.4 0.16 11.4 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF3488 PF11992.3 gi|389847955|ref|YP_006350194.1| - 0.13 10.8 1.4 0.13 10.9 1.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF2206 PF09971.4 gi|389847955|ref|YP_006350194.1| - 0.13 11.0 1.4 0.15 10.8 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Tmemb_55A PF09788.4 gi|389847955|ref|YP_006350194.1| - 0.22 10.5 0.6 0.24 10.5 0.4 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Tad PF13400.1 gi|389847955|ref|YP_006350194.1| - 0.26 11.3 0.2 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like zf-LITAF-like PF10601.4 gi|389847955|ref|YP_006350194.1| - 0.39 10.6 1.5 0.89 9.4 0.0 1.9 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain CcmD PF04995.9 gi|389847955|ref|YP_006350194.1| - 0.52 10.0 5.6 3.2 7.5 0.1 2.2 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF4282 PF14110.1 gi|389847955|ref|YP_006350194.1| - 0.86 9.8 4.5 1.1 9.5 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF4131 PF13567.1 gi|389847955|ref|YP_006350194.1| - 3.3 7.1 5.9 5.6 6.3 4.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) YjgP_YjgQ PF03739.9 gi|389847955|ref|YP_006350194.1| - 3.8 6.1 7.3 4.2 6.0 5.1 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family RseC_MucC PF04246.7 gi|389847955|ref|YP_006350194.1| - 5.1 6.6 6.9 6.4 6.3 1.3 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Asparaginase PF00710.15 gi|389847954|ref|YP_006350193.1| - 2.2e-85 286.2 0.4 2.6e-85 286.0 0.3 1.0 1 0 0 1 1 1 1 Asparaginase Acetyltransf_1 PF00583.19 gi|662859557|ref|YP_006350192.2| - 6.7e-13 48.4 0.0 1.6e-12 47.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|662859557|ref|YP_006350192.2| - 2.1e-09 37.6 0.7 1.5e-08 34.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|662859557|ref|YP_006350192.2| - 0.00016 21.5 0.1 0.00062 19.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|662859557|ref|YP_006350192.2| - 0.00022 21.0 0.0 0.00047 19.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|662859557|ref|YP_006350192.2| - 0.00072 19.4 0.2 0.0029 17.4 0.1 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|662859557|ref|YP_006350192.2| - 0.0012 18.9 4.5 0.0039 17.3 0.3 2.7 1 1 2 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|662859557|ref|YP_006350192.2| - 0.011 15.7 0.6 0.011 15.7 0.4 3.0 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|662859557|ref|YP_006350192.2| - 0.031 14.0 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_7 PF13508.1 gi|662859557|ref|YP_006350192.2| - 0.11 12.6 0.0 0.47 10.6 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain EthD PF07110.6 gi|662859557|ref|YP_006350192.2| - 0.12 13.2 5.1 0.6 11.0 0.1 3.4 2 1 2 4 4 4 0 EthD domain PAS_4 PF08448.5 gi|389847952|ref|YP_006350191.1| - 5.4e-06 26.4 0.1 1.7e-05 24.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|389847952|ref|YP_006350191.1| - 0.0064 16.4 0.4 0.013 15.4 0.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Cadherin_pro PF08758.6 gi|389847952|ref|YP_006350191.1| - 0.059 13.1 0.1 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 Cadherin prodomain like CPSase_sm_chain PF00988.17 gi|389847951|ref|YP_006350190.1| - 4.1e-37 126.6 0.0 9.4e-36 122.2 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|389847951|ref|YP_006350190.1| - 2.8e-35 121.4 0.0 4e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|389847951|ref|YP_006350190.1| - 1.8e-08 34.0 0.5 5e-06 26.1 0.3 2.6 1 1 1 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|389847951|ref|YP_006350190.1| - 0.00037 19.9 0.1 0.00084 18.8 0.1 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AsnC-type PF13404.1 gi|389847950|ref|YP_006350189.1| - 1.1e-17 63.3 1.4 1.8e-17 62.5 1.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|389847950|ref|YP_006350189.1| - 4.3e-17 61.2 0.1 7.1e-17 60.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|389847950|ref|YP_006350189.1| - 1.1e-09 37.8 1.5 1.1e-09 37.8 1.1 1.6 2 0 0 2 2 2 1 AsnC family MarR_2 PF12802.2 gi|389847950|ref|YP_006350189.1| - 1.8e-06 27.5 0.7 2.9e-06 26.8 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|389847950|ref|YP_006350189.1| - 2.8e-06 26.7 0.0 6e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|389847950|ref|YP_006350189.1| - 6.5e-06 25.8 0.1 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|389847950|ref|YP_006350189.1| - 9.1e-05 22.0 0.1 0.00047 19.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|389847950|ref|YP_006350189.1| - 0.00028 20.4 0.0 0.00044 19.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|389847950|ref|YP_006350189.1| - 0.00041 19.7 0.1 0.0018 17.6 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 GntR PF00392.16 gi|389847950|ref|YP_006350189.1| - 0.0019 17.5 0.3 0.0031 16.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|389847950|ref|YP_006350189.1| - 0.0028 17.2 0.1 0.0047 16.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|389847950|ref|YP_006350189.1| - 0.003 16.7 0.1 0.0065 15.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|389847950|ref|YP_006350189.1| - 0.003 17.0 0.2 0.0058 16.1 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|389847950|ref|YP_006350189.1| - 0.0034 17.3 0.1 0.0056 16.6 0.1 1.4 1 0 0 1 1 1 1 PaaX-like protein TrmB PF01978.14 gi|389847950|ref|YP_006350189.1| - 0.0039 16.8 0.1 0.013 15.1 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|389847950|ref|YP_006350189.1| - 0.0043 17.1 0.2 0.011 15.8 0.0 1.7 2 1 0 2 2 2 1 Winged helix-turn helix HTH_27 PF13463.1 gi|389847950|ref|YP_006350189.1| - 0.0046 17.2 0.1 0.0095 16.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain KorB PF08535.5 gi|389847950|ref|YP_006350189.1| - 0.0053 16.8 0.2 1.2 9.3 0.0 2.1 1 1 1 2 2 2 1 KorB domain HTH_5 PF01022.15 gi|389847950|ref|YP_006350189.1| - 0.0063 16.1 0.0 0.015 14.9 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|389847950|ref|YP_006350189.1| - 0.011 14.9 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family NapD PF03927.8 gi|389847950|ref|YP_006350189.1| - 0.014 15.2 0.8 0.035 13.9 0.3 1.8 2 0 0 2 2 2 0 NapD protein HrcA_DNA-bdg PF03444.10 gi|389847950|ref|YP_006350189.1| - 0.017 14.5 0.1 0.04 13.3 0.0 1.7 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.1 gi|389847950|ref|YP_006350189.1| - 0.026 14.5 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GYD PF08734.6 gi|389847950|ref|YP_006350189.1| - 0.026 14.2 0.5 0.12 12.1 0.0 2.1 2 1 0 2 2 2 0 GYD domain Sigma70_r4 PF04545.11 gi|389847950|ref|YP_006350189.1| - 0.036 13.3 0.2 0.064 12.5 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 RP-C PF03428.8 gi|389847950|ref|YP_006350189.1| - 0.038 13.4 0.1 0.091 12.2 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain Stk19 PF10494.4 gi|389847950|ref|YP_006350189.1| - 0.046 13.1 0.1 0.046 13.1 0.1 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_Crp_2 PF13545.1 gi|389847950|ref|YP_006350189.1| - 0.071 12.9 0.0 0.17 11.6 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.6 gi|389847950|ref|YP_006350189.1| - 0.085 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_38 PF13936.1 gi|389847950|ref|YP_006350189.1| - 0.087 12.3 0.3 0.2 11.2 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|389847950|ref|YP_006350189.1| - 0.11 12.6 0.4 0.42 10.7 0.1 1.9 1 1 1 2 2 2 0 Penicillinase repressor DUF746 PF05344.6 gi|389847950|ref|YP_006350189.1| - 0.15 11.6 0.2 2 8.0 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) NUDIX PF00293.23 gi|389847949|ref|YP_006350188.1| - 1.9e-12 46.9 0.4 2.4e-12 46.6 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|389847949|ref|YP_006350188.1| - 4.2e-05 22.9 0.7 0.00016 21.0 0.5 1.9 1 1 0 1 1 1 1 NUDIX domain Sigma70_r3 PF04539.11 gi|389847949|ref|YP_006350188.1| - 0.06 13.2 1.1 0.59 10.0 0.1 2.6 3 0 0 3 3 3 0 Sigma-70 region 3 Prok-JAB PF14464.1 gi|389847948|ref|YP_006350187.1| - 5.8e-22 77.2 0.2 7.3e-22 76.9 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|389847948|ref|YP_006350187.1| - 2.5e-10 40.0 0.0 3.4e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.1 gi|389847948|ref|YP_006350187.1| - 0.0066 16.3 0.0 0.012 15.5 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4329) adh_short PF00106.20 gi|389847947|ref|YP_006350186.1| - 7.3e-21 74.7 0.1 2.2e-20 73.2 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389847947|ref|YP_006350186.1| - 3.9e-10 39.9 0.0 5.3e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|389847947|ref|YP_006350186.1| - 3.7e-07 30.3 0.5 5.6e-07 29.7 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|389847947|ref|YP_006350186.1| - 1.2e-06 28.1 0.0 1.5e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|389847947|ref|YP_006350186.1| - 0.0081 15.8 0.1 0.079 12.6 0.1 2.0 1 1 0 1 1 1 1 KR domain Aminotran_5 PF00266.14 gi|389847946|ref|YP_006350185.1| - 7.5e-25 87.4 0.0 1e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|389847946|ref|YP_006350185.1| - 0.00024 20.1 0.0 0.00038 19.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|389847946|ref|YP_006350185.1| - 0.00092 17.5 0.0 0.0013 17.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AIRS_C PF02769.17 gi|662859556|ref|YP_006350184.2| - 1.9e-18 66.9 0.3 3e-18 66.2 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|662859556|ref|YP_006350184.2| - 2.1e-05 24.6 0.1 2.1e-05 24.6 0.1 2.7 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain Abhydrolase_6 PF12697.2 gi|662859555|ref|YP_006350183.2| - 3.6e-37 128.4 9.9 4.6e-37 128.1 6.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|662859555|ref|YP_006350183.2| - 1.4e-21 77.0 0.0 2.8e-20 72.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|662859555|ref|YP_006350183.2| - 1.2e-17 64.0 0.0 3.6e-17 62.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|662859555|ref|YP_006350183.2| - 4.3e-06 26.4 0.0 7.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|662859555|ref|YP_006350183.2| - 9.7e-05 20.9 0.0 0.00026 19.5 0.0 1.6 2 0 0 2 2 2 1 Ndr family DLH PF01738.13 gi|662859555|ref|YP_006350183.2| - 0.032 13.5 0.0 1.7 7.9 0.0 2.4 2 1 0 2 2 2 0 Dienelactone hydrolase family DUF953 PF06110.6 gi|662859555|ref|YP_006350183.2| - 0.057 12.8 0.0 0.22 10.9 0.0 1.9 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Abhydrolase_2 PF02230.11 gi|662859555|ref|YP_006350183.2| - 0.12 11.7 0.0 19 4.6 0.0 2.6 2 1 1 3 3 3 0 Phospholipase/Carboxylesterase Cons_hypoth698 PF03601.9 gi|389847942|ref|YP_006350181.1| - 1e-53 181.9 21.7 1.3e-53 181.6 15.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 ADK PF00406.17 gi|662859554|ref|YP_006350179.2| - 2e-44 151.0 0.0 2.5e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|662859554|ref|YP_006350179.2| - 8.2e-18 63.7 0.9 1.4e-17 63.0 0.6 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|662859554|ref|YP_006350179.2| - 2.2e-11 44.6 0.1 3.5e-11 43.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|662859554|ref|YP_006350179.2| - 1.8e-05 24.6 0.0 3e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|662859554|ref|YP_006350179.2| - 4.3e-05 23.8 0.0 9.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DZR PF12773.2 gi|662859554|ref|YP_006350179.2| - 0.0037 17.0 1.4 0.008 15.9 1.0 1.5 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|662859554|ref|YP_006350179.2| - 0.0039 16.8 0.1 0.0054 16.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family GFA PF04828.9 gi|662859554|ref|YP_006350179.2| - 0.0047 16.8 0.4 0.67 9.9 0.0 2.3 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|662859554|ref|YP_006350179.2| - 0.0055 16.6 4.3 0.06 13.3 0.9 2.7 2 1 0 2 2 2 1 zinc-finger binding domain of transposase IS66 DUF1451 PF07295.6 gi|662859554|ref|YP_006350179.2| - 0.013 15.2 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) AAA_28 PF13521.1 gi|662859554|ref|YP_006350179.2| - 0.015 15.2 0.1 0.036 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain NinF PF05810.7 gi|662859554|ref|YP_006350179.2| - 0.017 14.9 0.3 0.038 13.7 0.2 1.6 1 0 0 1 1 1 0 NinF protein DUF3039 PF11238.3 gi|662859554|ref|YP_006350179.2| - 0.021 14.2 0.1 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-C4_Topoisom PF01396.14 gi|662859554|ref|YP_006350179.2| - 0.031 13.7 0.3 0.59 9.6 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|662859554|ref|YP_006350179.2| - 0.038 13.9 1.6 0.074 13.0 1.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|662859554|ref|YP_006350179.2| - 0.049 13.0 1.3 6.4 6.3 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain PAS_7 PF12860.2 gi|662859554|ref|YP_006350179.2| - 0.061 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 PAS fold OrfB_Zn_ribbon PF07282.6 gi|662859554|ref|YP_006350179.2| - 0.069 12.8 0.5 0.13 11.9 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Thymidylate_kin PF02223.12 gi|662859554|ref|YP_006350179.2| - 0.074 12.4 0.3 12 5.1 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase ABC_tran PF00005.22 gi|662859554|ref|YP_006350179.2| - 0.08 13.2 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 ABC transporter SRP54 PF00448.17 gi|662859554|ref|YP_006350179.2| - 0.093 12.1 0.0 0.2 11.0 0.0 1.6 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|662859554|ref|YP_006350179.2| - 0.097 12.8 0.0 0.77 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Nudix_N_2 PF14803.1 gi|662859554|ref|YP_006350179.2| - 0.1 12.3 2.4 6.5 6.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zeta_toxin PF06414.7 gi|662859554|ref|YP_006350179.2| - 0.12 11.4 0.1 0.22 10.5 0.1 1.6 1 1 0 1 1 1 0 Zeta toxin TF_Zn_Ribbon PF08271.7 gi|662859554|ref|YP_006350179.2| - 0.13 11.6 4.5 0.37 10.1 3.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|662859554|ref|YP_006350179.2| - 0.18 11.5 3.5 6.5 6.5 0.2 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|662859554|ref|YP_006350179.2| - 0.27 10.9 1.9 3.6 7.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|662859554|ref|YP_006350179.2| - 1.3 8.3 4.0 2.8 7.2 2.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DUF106 PF01956.11 gi|662859553|ref|YP_006350178.2| - 5.5e-48 162.6 0.7 6.9e-48 162.3 0.5 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|662859553|ref|YP_006350178.2| - 3.4e-06 26.8 0.3 5.1e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4013 PF13197.1 gi|662859553|ref|YP_006350178.2| - 0.078 12.3 3.5 0.28 10.4 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) AAA_18 PF13238.1 gi|662859552|ref|YP_006350177.2| - 1.7e-16 60.7 0.1 2.2e-16 60.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|662859552|ref|YP_006350177.2| - 2.8e-16 59.9 1.5 9.1e-15 55.0 1.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|662859552|ref|YP_006350177.2| - 9e-15 55.5 2.1 1.1e-14 55.2 1.0 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|662859552|ref|YP_006350177.2| - 8.7e-09 35.4 0.0 3.4e-08 33.4 0.0 1.8 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|662859552|ref|YP_006350177.2| - 1.6e-08 34.5 0.4 4.4e-07 29.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|662859552|ref|YP_006350177.2| - 5.3e-05 23.1 1.5 0.00042 20.2 1.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|662859552|ref|YP_006350177.2| - 0.00023 21.3 0.0 0.00036 20.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|662859552|ref|YP_006350177.2| - 0.0003 20.4 0.0 0.00075 19.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|662859552|ref|YP_006350177.2| - 0.0013 18.1 0.0 0.98 8.7 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_22 PF13401.1 gi|662859552|ref|YP_006350177.2| - 0.0013 18.8 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|662859552|ref|YP_006350177.2| - 0.0013 17.9 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|662859552|ref|YP_006350177.2| - 0.0017 18.2 0.2 0.0033 17.3 0.1 1.7 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|662859552|ref|YP_006350177.2| - 0.0036 16.7 0.7 0.0063 15.9 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|662859552|ref|YP_006350177.2| - 0.0037 17.2 0.4 0.0074 16.2 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain Cytidylate_kin PF02224.13 gi|662859552|ref|YP_006350177.2| - 0.017 14.5 0.2 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase Zeta_toxin PF06414.7 gi|662859552|ref|YP_006350177.2| - 0.017 14.2 0.0 0.027 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|662859552|ref|YP_006350177.2| - 0.018 14.6 0.5 0.088 12.3 0.1 2.0 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|662859552|ref|YP_006350177.2| - 0.019 14.5 0.1 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|662859552|ref|YP_006350177.2| - 0.02 14.6 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|662859552|ref|YP_006350177.2| - 0.04 13.3 0.1 0.086 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|662859552|ref|YP_006350177.2| - 0.042 14.0 0.0 0.072 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CbiA PF01656.18 gi|662859552|ref|YP_006350177.2| - 0.045 13.1 0.3 0.086 12.2 0.2 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.22 gi|662859552|ref|YP_006350177.2| - 0.081 13.2 0.0 0.1 12.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter SRP54 PF00448.17 gi|662859552|ref|YP_006350177.2| - 0.098 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|662859552|ref|YP_006350177.2| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TruB_N PF01509.13 gi|389847937|ref|YP_006350176.1| - 6.4e-21 75.0 0.2 9.7e-12 45.2 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|389847937|ref|YP_006350176.1| - 5.9e-10 38.7 0.4 1e-09 37.9 0.3 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|389847937|ref|YP_006350176.1| - 2.2e-09 37.1 0.1 4.3e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3366 PF11846.3 gi|389847936|ref|YP_006350175.1| - 0.049 13.5 0.0 0.054 13.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) MCLC PF05934.6 gi|389847936|ref|YP_006350175.1| - 0.055 11.7 0.1 0.081 11.2 0.0 1.4 1 1 0 1 1 1 0 Mid-1-related chloride channel (MCLC) DUF1127 PF06568.6 gi|389847935|ref|YP_006350174.1| - 0.012 14.9 1.4 0.036 13.4 1.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1127) DDE_Tnp_IS1595 PF12762.2 gi|389847934|ref|YP_006350173.1| - 1.4e-10 41.2 0.0 2.2e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain HTH_38 PF13936.1 gi|389847934|ref|YP_006350173.1| - 0.0027 17.1 0.2 0.0081 15.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389847934|ref|YP_006350173.1| - 0.027 14.1 1.2 0.073 12.7 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain OrfB_Zn_ribbon PF07282.6 gi|389847934|ref|YP_006350173.1| - 0.064 12.9 1.3 0.17 11.5 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|389847934|ref|YP_006350173.1| - 0.2 10.9 2.7 0.64 9.3 1.8 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|389847934|ref|YP_006350173.1| - 0.3 10.5 2.5 1 8.8 1.8 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit VPEP PF07589.6 gi|389847931|ref|YP_006350170.1| - 3 7.8 4.7 1.6 8.7 0.8 2.0 2 0 0 2 2 2 0 PEP-CTERM motif N_methyl_3 PF13633.1 gi|389847931|ref|YP_006350170.1| - 9.8 6.3 8.7 20 5.3 1.0 2.4 2 0 0 2 2 2 0 Prokaryotic N-terminal methylation site MMPL PF03176.10 gi|389847930|ref|YP_006350169.1| - 2.5e-32 111.9 41.8 9.2e-19 67.3 8.1 3.0 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|389847930|ref|YP_006350169.1| - 3.8e-11 42.6 8.2 9.8e-08 31.5 0.6 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|389847930|ref|YP_006350169.1| - 1e-08 33.6 12.7 1.1e-06 26.9 2.5 2.2 2 0 0 2 2 2 2 Patched family DUF2177 PF09945.4 gi|389847929|ref|YP_006350168.1| - 0.031 14.2 1.3 0.031 14.2 0.9 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2177) DUF981 PF06168.6 gi|389847929|ref|YP_006350168.1| - 0.053 13.2 7.7 0.27 10.9 5.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DUF3007 PF11460.3 gi|389847929|ref|YP_006350168.1| - 0.19 11.7 7.0 0.53 10.3 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) DUF4231 PF14015.1 gi|389847929|ref|YP_006350168.1| - 0.37 10.7 4.5 0.29 11.1 2.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) Zip PF02535.17 gi|389847929|ref|YP_006350168.1| - 0.44 9.4 8.4 0.5 9.3 5.8 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter MerC PF03203.9 gi|389847929|ref|YP_006350168.1| - 0.61 10.4 7.3 1.1 9.6 5.1 1.4 1 1 0 1 1 1 0 MerC mercury resistance protein MARVEL PF01284.18 gi|389847929|ref|YP_006350168.1| - 0.86 9.4 8.0 0.98 9.2 5.5 1.1 1 0 0 1 1 1 0 Membrane-associating domain DUF202 PF02656.10 gi|389847929|ref|YP_006350168.1| - 0.94 9.7 9.8 0.23 11.7 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) YtpI PF14007.1 gi|389847929|ref|YP_006350168.1| - 4.7 7.2 8.9 9 6.3 0.4 2.6 1 1 0 2 2 2 0 YtpI-like protein HTH_20 PF12840.2 gi|389847928|ref|YP_006350167.1| - 2.8e-10 39.8 0.1 3.8e-10 39.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389847928|ref|YP_006350167.1| - 1.8e-05 24.3 0.0 2.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|389847928|ref|YP_006350167.1| - 2.7e-05 23.7 0.5 3.7e-05 23.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|389847928|ref|YP_006350167.1| - 4.1e-05 23.0 0.0 6.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847928|ref|YP_006350167.1| - 0.00013 21.5 0.1 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.10 gi|389847928|ref|YP_006350167.1| - 0.00026 20.7 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|389847928|ref|YP_006350167.1| - 0.00032 20.0 0.1 0.00044 19.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|389847928|ref|YP_006350167.1| - 0.0047 16.8 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|389847928|ref|YP_006350167.1| - 0.0062 16.2 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|389847928|ref|YP_006350167.1| - 0.0098 15.4 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|389847928|ref|YP_006350167.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|389847928|ref|YP_006350167.1| - 0.046 13.8 0.0 0.063 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.1 gi|389847928|ref|YP_006350167.1| - 0.05 13.2 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.1 gi|389847928|ref|YP_006350167.1| - 0.072 13.2 0.1 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|389847928|ref|YP_006350167.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|389847928|ref|YP_006350167.1| - 0.1 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.8 gi|389847928|ref|YP_006350167.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain CopD PF05425.8 gi|389847927|ref|YP_006350166.1| - 3.6e-05 23.9 14.4 3.6e-05 23.9 10.0 1.9 1 1 1 2 2 2 1 Copper resistance protein D DUF4149 PF13664.1 gi|389847927|ref|YP_006350166.1| - 0.048 13.7 9.8 0.042 13.9 4.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) zf-AN1 PF01428.11 gi|389847926|ref|YP_006350165.1| - 4.4e-09 36.0 4.7 7e-09 35.4 3.2 1.3 1 0 0 1 1 1 1 AN1-like Zinc finger FYVE PF01363.16 gi|389847926|ref|YP_006350165.1| - 0.047 13.5 0.7 0.066 13.1 0.5 1.3 1 0 0 1 1 1 0 FYVE zinc finger C1_2 PF03107.11 gi|389847926|ref|YP_006350165.1| - 0.1 12.7 6.7 0.16 12.1 4.6 1.3 1 0 0 1 1 1 0 C1 domain CAP PF00188.21 gi|389847925|ref|YP_006350164.1| - 2e-18 67.0 0.2 4.5e-18 65.9 0.2 1.6 1 0 0 1 1 1 1 Cysteine-rich secretory protein family HPP PF04982.8 gi|389847924|ref|YP_006350163.1| - 1.7e-09 37.5 10.4 3.2e-09 36.6 7.2 1.5 1 1 0 1 1 1 1 HPP family ABC2_membrane_2 PF12679.2 gi|389847924|ref|YP_006350163.1| - 2.5 6.8 6.4 4.1 6.1 4.4 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Acetyltransf_3 PF13302.1 gi|389847923|ref|YP_006350162.1| - 4e-31 108.0 0.0 5.1e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389847923|ref|YP_006350162.1| - 3.4e-15 56.3 0.0 4.2e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847923|ref|YP_006350162.1| - 1.8e-11 43.9 0.0 2.7e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|389847923|ref|YP_006350162.1| - 4e-08 33.2 0.0 7e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847923|ref|YP_006350162.1| - 0.0025 17.9 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389847923|ref|YP_006350162.1| - 0.07 13.2 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Semialdhyde_dh PF01118.19 gi|389847922|ref|YP_006350161.1| - 1.1e-33 116.0 0.0 2.1e-33 115.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|389847922|ref|YP_006350161.1| - 5.6e-30 104.5 0.0 8.2e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|389847922|ref|YP_006350161.1| - 6.8e-05 22.7 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|389847922|ref|YP_006350161.1| - 0.0003 21.3 0.0 0.00059 20.3 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|389847922|ref|YP_006350161.1| - 0.0011 19.4 0.0 0.0021 18.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|389847922|ref|YP_006350161.1| - 0.011 15.1 0.0 0.058 12.8 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Saccharop_dh PF03435.13 gi|389847922|ref|YP_006350161.1| - 0.072 12.0 0.0 0.15 11.0 0.0 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase CPSase_L_D2 PF02786.12 gi|389847921|ref|YP_006350160.1| - 1.5e-74 249.8 0.1 2.3e-74 249.2 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|389847921|ref|YP_006350160.1| - 7.1e-43 145.1 0.8 7.8e-42 141.8 0.1 2.9 3 1 0 3 3 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|389847921|ref|YP_006350160.1| - 3e-36 123.6 0.0 7.7e-36 122.3 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|389847921|ref|YP_006350160.1| - 5.5e-19 68.6 1.4 8.9e-19 67.9 0.3 1.8 2 0 0 2 2 1 1 ATP-grasp domain Biotin_lipoyl PF00364.17 gi|389847921|ref|YP_006350160.1| - 3.6e-17 61.7 6.4 4.3e-17 61.5 2.7 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme ATPgrasp_Ter PF15632.1 gi|389847921|ref|YP_006350160.1| - 5.5e-14 51.6 0.1 2.6e-13 49.4 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|389847921|ref|YP_006350160.1| - 1.8e-10 40.5 0.0 3.7e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Biotin_lipoyl_2 PF13533.1 gi|389847921|ref|YP_006350160.1| - 7.1e-10 38.4 1.8 0.00032 20.3 0.0 3.3 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.17 gi|389847921|ref|YP_006350160.1| - 9.7e-08 31.5 0.1 3.6e-07 29.6 0.1 1.9 2 0 0 2 2 2 1 ATP-grasp domain HlyD PF00529.15 gi|389847921|ref|YP_006350160.1| - 0.00058 19.2 1.9 0.17 11.1 0.4 2.4 2 0 0 2 2 2 2 HlyD family secretion protein ATP-grasp_3 PF02655.9 gi|389847921|ref|YP_006350160.1| - 0.00099 19.0 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain HlyD_2 PF12700.2 gi|389847921|ref|YP_006350160.1| - 0.0014 17.8 0.5 0.64 9.1 0.0 2.4 1 1 1 2 2 2 2 HlyD family secretion protein RimK PF08443.6 gi|389847921|ref|YP_006350160.1| - 0.0014 18.0 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain B12-binding PF02310.14 gi|389847921|ref|YP_006350160.1| - 0.0021 17.8 0.9 2.5 7.9 0.0 3.5 3 1 0 3 3 2 1 B12 binding domain DUF4019 PF13211.1 gi|389847921|ref|YP_006350160.1| - 0.0067 16.6 0.2 0.019 15.2 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF4019) GCV_H PF01597.14 gi|389847921|ref|YP_006350160.1| - 0.009 15.6 1.2 0.021 14.5 0.4 1.9 2 0 0 2 2 2 1 Glycine cleavage H-protein GARS_A PF01071.14 gi|389847921|ref|YP_006350160.1| - 0.0094 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|389847921|ref|YP_006350160.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|389847921|ref|YP_006350160.1| - 0.019 14.3 1.4 0.51 9.6 0.1 2.3 2 0 0 2 2 2 0 ATP-grasp domain Oxidored_nitro PF00148.14 gi|389847921|ref|YP_006350160.1| - 0.022 13.3 0.7 0.45 9.0 0.1 2.2 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase HlyD_3 PF13437.1 gi|389847921|ref|YP_006350160.1| - 0.037 14.3 0.4 28 5.1 0.0 3.5 3 0 0 3 3 3 0 HlyD family secretion protein BPL_LplA_LipB PF03099.14 gi|389847920|ref|YP_006350159.1| - 1e-14 54.6 0.0 2.4e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|389847920|ref|YP_006350159.1| - 8.5e-12 44.5 0.0 1.4e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|389847920|ref|YP_006350159.1| - 1.9e-07 30.6 0.1 3.4e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|389847920|ref|YP_006350159.1| - 9.5e-07 28.1 0.0 1.7e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|389847920|ref|YP_006350159.1| - 1.5e-05 24.6 0.0 3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389847920|ref|YP_006350159.1| - 3.3e-05 23.4 0.0 6.8e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|389847920|ref|YP_006350159.1| - 0.00027 20.5 0.0 0.0013 18.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|389847920|ref|YP_006350159.1| - 0.0049 16.3 1.4 0.018 14.5 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|389847920|ref|YP_006350159.1| - 0.0057 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|389847920|ref|YP_006350159.1| - 0.0098 15.8 0.0 0.025 14.5 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF3011 PF11218.3 gi|389847920|ref|YP_006350159.1| - 0.084 12.6 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3011) HTH_23 PF13384.1 gi|389847920|ref|YP_006350159.1| - 0.084 12.5 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.7 gi|389847920|ref|YP_006350159.1| - 0.13 11.8 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Usp PF00582.21 gi|389847919|ref|YP_006350158.1| - 3.5e-39 134.1 1.4 5e-39 133.7 1.0 1.2 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|389847918|ref|YP_006350157.1| - 8.3e-22 78.2 0.7 3.1e-20 73.1 0.5 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|389847918|ref|YP_006350157.1| - 5.2e-13 49.6 3.8 3e-12 47.1 2.7 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|389847918|ref|YP_006350157.1| - 6.6e-07 29.0 0.1 1.3e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|389847918|ref|YP_006350157.1| - 2.7e-05 23.2 0.0 4.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|389847918|ref|YP_006350157.1| - 0.44 9.7 8.8 2 7.5 2.3 3.0 1 1 1 2 2 2 0 Amidohydrolase family HD PF01966.17 gi|389847917|ref|YP_006350156.1| - 9e-10 38.6 2.9 2e-09 37.5 2.0 1.6 1 0 0 1 1 1 1 HD domain UPF0052 PF01933.13 gi|389847916|ref|YP_006350155.1| - 8.6e-43 146.7 0.0 1.4e-42 146.1 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|389847915|ref|YP_006350154.1| - 1.8e-08 33.6 0.7 1.2e-07 30.8 0.5 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|389847915|ref|YP_006350154.1| - 0.0066 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|389847915|ref|YP_006350154.1| - 0.025 14.7 0.0 2.5 8.2 0.0 2.3 1 1 1 2 2 2 0 Radical SAM superfamily Ribul_P_3_epim PF00834.14 gi|389847915|ref|YP_006350154.1| - 0.052 12.6 0.1 0.093 11.8 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family NMO PF03060.10 gi|389847915|ref|YP_006350154.1| - 0.059 12.5 0.6 0.096 11.8 0.0 1.5 2 0 0 2 2 2 0 Nitronate monooxygenase PcrB PF01884.12 gi|389847915|ref|YP_006350154.1| - 0.09 12.0 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 PcrB family IMPDH PF00478.20 gi|389847915|ref|YP_006350154.1| - 0.1 11.4 0.2 0.13 11.1 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain CitG PF01874.11 gi|389847914|ref|YP_006350153.1| - 6.8e-61 205.8 2.4 8e-61 205.6 1.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|389847913|ref|YP_006350152.1| - 8.6e-38 129.6 0.0 1e-37 129.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Phage_P2_GpE PF06528.7 gi|389847913|ref|YP_006350152.1| - 0.028 13.8 1.0 0.057 12.8 0.7 1.5 1 0 0 1 1 1 0 Phage P2 GpE Ribosomal_S17e PF00833.13 gi|389847912|ref|YP_006350151.1| - 3.3e-14 52.6 0.1 4.1e-14 52.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|389847912|ref|YP_006350151.1| - 0.038 14.2 0.0 0.039 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) GDPD PF03009.12 gi|389847911|ref|YP_006350150.1| - 2.9e-36 125.2 0.0 4e-34 118.2 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Carboxyl_trans PF01039.17 gi|389847909|ref|YP_006350148.1| - 7.1e-205 681.0 0.0 8.1e-205 680.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|389847909|ref|YP_006350148.1| - 0.0039 16.4 0.0 0.016 14.4 0.0 1.8 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) cwf21 PF08312.7 gi|389847909|ref|YP_006350148.1| - 7.9 6.4 7.2 4.9 7.0 0.5 2.5 2 0 0 2 2 2 0 cwf21 domain SNF PF00209.13 gi|389847908|ref|YP_006350147.1| - 1.1e-46 159.4 27.0 3.8e-25 88.3 3.2 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family DUF3742 PF12553.3 gi|389847908|ref|YP_006350147.1| - 0.0046 17.3 3.7 0.095 13.1 0.3 2.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3742) SNF PF00209.13 gi|389847907|ref|YP_006350146.1| - 2.5e-52 178.0 35.4 6.3e-31 107.4 12.0 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short PF00106.20 gi|389847906|ref|YP_006350145.1| - 1.1e-23 83.9 1.1 2.4e-23 82.9 0.8 1.5 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|389847906|ref|YP_006350145.1| - 4.3e-19 69.2 0.0 2.1e-18 67.0 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|389847906|ref|YP_006350145.1| - 8.3e-09 35.2 0.1 9.7e-09 35.0 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|389847906|ref|YP_006350145.1| - 5.8e-08 32.6 0.9 3.3e-07 30.1 0.6 2.0 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|389847906|ref|YP_006350145.1| - 0.00037 20.5 2.6 0.00074 19.5 1.9 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|389847906|ref|YP_006350145.1| - 0.00051 19.0 0.0 0.00074 18.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|389847906|ref|YP_006350145.1| - 0.004 15.8 0.0 0.0049 15.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|389847906|ref|YP_006350145.1| - 0.006 15.8 0.1 0.012 14.8 0.1 1.5 1 0 0 1 1 1 1 NmrA-like family ACT PF01842.20 gi|389847906|ref|YP_006350145.1| - 0.0091 15.4 0.1 0.026 14.0 0.1 1.8 1 0 0 1 1 1 1 ACT domain Eno-Rase_NADH_b PF12242.3 gi|389847906|ref|YP_006350145.1| - 0.052 13.3 1.2 0.13 12.0 0.9 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ADH_zinc_N PF00107.21 gi|662859551|ref|YP_006350144.2| - 5.2e-19 68.0 0.2 9.9e-19 67.1 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|662859551|ref|YP_006350144.2| - 1.5e-17 64.6 0.4 1.5e-17 64.6 0.3 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|662859551|ref|YP_006350144.2| - 2.8e-14 52.8 0.1 1.5e-13 50.4 0.1 2.1 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain DUF2493 PF10686.4 gi|662859551|ref|YP_006350144.2| - 0.0031 17.0 2.9 0.0067 15.9 2.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2493) adh_short PF00106.20 gi|662859551|ref|YP_006350144.2| - 0.015 15.2 1.3 0.015 15.2 0.9 2.1 3 0 0 3 3 3 0 short chain dehydrogenase DapB_N PF01113.15 gi|662859551|ref|YP_006350144.2| - 0.068 13.0 0.7 0.14 12.0 0.5 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.3 gi|662859551|ref|YP_006350144.2| - 0.1 12.3 0.8 0.2 11.4 0.5 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ELFV_dehydrog PF00208.16 gi|662859551|ref|YP_006350144.2| - 0.21 11.1 1.5 0.34 10.4 1.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IceA2 PF05862.6 gi|389847904|ref|YP_006350143.1| - 0.08 12.6 0.0 0.09 12.4 0.0 1.1 1 0 0 1 1 1 0 Helicobacter pylori IceA2 protein ATP-grasp_2 PF08442.5 gi|389847903|ref|YP_006350142.1| - 1.3e-67 227.1 0.8 2e-67 226.5 0.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|389847903|ref|YP_006350142.1| - 1.3e-19 70.3 7.5 2.6e-18 66.0 3.7 2.8 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|389847903|ref|YP_006350142.1| - 8.1e-14 51.4 0.5 2.2e-13 50.0 0.4 1.7 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|389847903|ref|YP_006350142.1| - 1e-11 44.5 3.3 3.6e-09 36.2 0.7 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|389847903|ref|YP_006350142.1| - 6.6e-10 39.0 0.3 4.5e-09 36.3 0.1 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|389847903|ref|YP_006350142.1| - 2.2e-08 33.6 0.2 4.1e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|389847903|ref|YP_006350142.1| - 1.8e-07 30.9 2.7 1.9e-07 30.8 0.3 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.1 gi|389847903|ref|YP_006350142.1| - 0.016 13.9 0.0 0.03 13.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|389847903|ref|YP_006350142.1| - 0.018 14.4 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain CoA_binding PF02629.14 gi|389847902|ref|YP_006350141.1| - 8.4e-25 87.1 4.3 1.2e-24 86.6 0.9 2.5 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|389847902|ref|YP_006350141.1| - 2.5e-13 49.8 0.7 4.9e-13 48.9 0.5 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|389847902|ref|YP_006350141.1| - 3.8e-10 39.5 0.0 5.8e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|389847902|ref|YP_006350141.1| - 1.8e-08 34.5 0.1 6.8e-06 26.2 0.1 2.3 2 0 0 2 2 2 2 CoA binding domain GFO_IDH_MocA PF01408.17 gi|389847902|ref|YP_006350141.1| - 0.021 15.3 0.3 0.1 13.1 0.1 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold MCPsignal PF00015.16 gi|389847901|ref|YP_006350140.1| - 4.7e-51 173.3 51.3 1.3e-47 162.0 23.5 2.6 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|389847901|ref|YP_006350140.1| - 2.3e-11 43.6 4.3 2.7e-09 37.0 0.3 5.7 5 2 2 7 7 6 2 HAMP domain DUF948 PF06103.6 gi|389847901|ref|YP_006350140.1| - 3.2e-05 23.6 26.8 0.044 13.6 1.1 5.3 4 2 2 6 6 5 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|389847901|ref|YP_006350140.1| - 0.00035 20.6 28.0 0.024 14.7 0.7 5.1 2 2 0 4 4 4 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|389847901|ref|YP_006350140.1| - 0.046 13.5 24.1 0.11 12.3 0.6 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Spectrin PF00435.16 gi|389847901|ref|YP_006350140.1| - 0.049 13.9 20.9 30 4.9 0.4 5.5 3 1 3 6 6 6 0 Spectrin repeat DUF2130 PF09903.4 gi|389847901|ref|YP_006350140.1| - 0.085 11.5 8.7 0.033 12.9 0.3 2.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) Arfaptin PF06456.8 gi|389847901|ref|YP_006350140.1| - 0.1 11.9 9.8 0.87 8.8 1.1 3.4 2 2 2 4 4 4 0 Arfaptin-like domain DUF552 PF04472.7 gi|389847901|ref|YP_006350140.1| - 0.13 12.2 3.8 7.5 6.5 0.4 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF552) CorA PF01544.13 gi|389847901|ref|YP_006350140.1| - 0.31 10.0 15.4 0.13 11.2 3.2 2.6 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein APG17 PF04108.7 gi|389847901|ref|YP_006350140.1| - 0.37 9.5 17.1 7.7 5.2 11.8 3.1 1 1 0 1 1 1 0 Autophagy protein Apg17 Nup54 PF13874.1 gi|389847901|ref|YP_006350140.1| - 0.42 10.2 12.7 0.59 9.7 1.8 3.1 2 2 0 2 2 2 0 Nucleoporin complex subunit 54 Laminin_II PF06009.7 gi|389847901|ref|YP_006350140.1| - 0.45 10.2 33.4 1.4 8.6 1.7 4.9 3 2 2 5 5 5 0 Laminin Domain II MukB PF04310.7 gi|389847901|ref|YP_006350140.1| - 0.5 9.6 3.3 9.2 5.5 0.1 3.2 3 0 0 3 3 3 0 MukB N-terminal HisK_N PF09385.5 gi|389847901|ref|YP_006350140.1| - 0.54 9.8 3.7 72 2.9 0.1 3.7 2 1 1 4 4 4 0 Histidine kinase N terminal NPV_P10 PF05531.7 gi|389847901|ref|YP_006350140.1| - 0.86 9.8 27.8 7.7 6.8 1.9 5.5 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|389847901|ref|YP_006350140.1| - 1.4 8.8 21.9 1.3 8.9 1.6 4.9 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3540 PF12059.3 gi|389847901|ref|YP_006350140.1| - 1.8 8.1 24.0 0.16 11.5 0.2 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF3540) Fib_alpha PF08702.5 gi|389847901|ref|YP_006350140.1| - 1.9 8.6 18.6 0.62 10.1 0.9 4.2 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family Sec34 PF04136.10 gi|389847901|ref|YP_006350140.1| - 1.9 8.1 9.0 0.52 10.0 0.1 3.2 1 1 2 3 3 3 0 Sec34-like family Exonuc_VII_S PF02609.11 gi|389847901|ref|YP_006350140.1| - 4.5 7.1 11.5 46 3.9 0.0 5.4 5 0 0 5 5 5 0 Exonuclease VII small subunit ISG65-75 PF11727.3 gi|389847901|ref|YP_006350140.1| - 9.2 5.2 32.0 0.045 12.8 0.3 4.3 2 1 1 4 4 4 0 Invariant surface glycoprotein CBS PF00571.23 gi|389847900|ref|YP_006350139.1| - 1e-21 76.4 2.0 7.5e-11 41.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF2062 PF09835.4 gi|389847899|ref|YP_006350138.1| - 7.3e-21 74.3 8.3 9.5e-21 74.0 5.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF204 PF02659.10 gi|389847899|ref|YP_006350138.1| - 0.071 13.2 2.6 0.98 9.5 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF ATP_synt_I PF03899.10 gi|389847899|ref|YP_006350138.1| - 0.2 11.8 7.7 0.11 12.6 2.4 2.1 2 0 0 2 2 2 0 ATP synthase I chain DUF4191 PF13829.1 gi|389847899|ref|YP_006350138.1| - 0.47 9.5 2.2 8.1 5.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) PAP2 PF01569.16 gi|389847899|ref|YP_006350138.1| - 2.5 7.7 8.7 8.2 6.1 0.0 2.7 1 1 1 2 2 2 0 PAP2 superfamily Glycos_transf_3 PF00591.16 gi|389847898|ref|YP_006350137.1| - 8.2e-102 339.9 2.1 1.3e-101 339.2 1.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|389847898|ref|YP_006350137.1| - 6.3e-19 67.3 2.0 1.4e-18 66.1 1.4 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|389847898|ref|YP_006350137.1| - 0.0047 16.3 0.1 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2717) PRAI PF00697.17 gi|389847897|ref|YP_006350136.1| - 6.8e-40 136.7 0.0 7.8e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|389847897|ref|YP_006350136.1| - 9.9e-07 28.2 3.3 2e-06 27.2 2.1 1.6 1 1 1 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|389847897|ref|YP_006350136.1| - 0.0032 16.5 1.5 0.0063 15.6 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|389847897|ref|YP_006350136.1| - 0.0076 15.5 0.8 0.026 13.7 0.0 2.2 2 1 0 2 2 2 1 Histidine biosynthesis protein DeoC PF01791.4 gi|389847897|ref|YP_006350136.1| - 0.05 12.8 1.4 0.35 10.1 1.0 2.2 1 1 0 1 1 1 0 DeoC/LacD family aldolase BtpA PF03437.10 gi|389847897|ref|YP_006350136.1| - 0.11 11.6 1.2 0.14 11.3 0.2 1.7 2 1 0 2 2 2 0 BtpA family Chorismate_bind PF00425.13 gi|389847896|ref|YP_006350135.1| - 6.8e-91 304.1 0.0 1.6e-88 296.4 0.0 2.6 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|389847896|ref|YP_006350135.1| - 1.5e-21 76.8 0.1 4.3e-20 72.1 0.1 3.0 3 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|389847894|ref|YP_006350133.1| - 1.4e-44 151.8 0.0 1.6e-44 151.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|389847894|ref|YP_006350133.1| - 6.6e-07 28.9 0.0 5.6e-06 25.9 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 Ribonuc_red_lgC PF02867.10 gi|389847893|ref|YP_006350132.1| - 5.9e-150 500.3 0.0 7.3e-150 500.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|389847893|ref|YP_006350132.1| - 5e-28 96.8 0.0 1.7e-27 95.2 0.0 2.0 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|389847893|ref|YP_006350132.1| - 4.6e-23 80.8 0.0 1.5e-22 79.1 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain TrwB_AAD_bind PF10412.4 gi|389847893|ref|YP_006350132.1| - 0.09 11.3 0.0 0.18 10.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain zf-ribbon_3 PF13248.1 gi|389847893|ref|YP_006350132.1| - 0.72 9.1 6.5 1.6 8.0 4.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF1628 PF07790.6 gi|389847891|ref|YP_006350130.1| - 2.4e-23 82.6 6.6 3.7e-23 82.0 2.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|389847890|ref|YP_006350129.1| - 5.7e-26 91.0 4.8 9.9e-26 90.3 1.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|389847889|ref|YP_006350128.1| - 6.2e-25 87.7 1.7 6.2e-25 87.7 1.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF4383 PF14325.1 gi|389847888|ref|YP_006350127.1| - 0.26 11.3 2.4 0.46 10.5 1.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) DUF1684 PF07920.6 gi|389847887|ref|YP_006350126.1| - 9.8e-55 184.3 0.1 1.3e-54 183.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Aldo_ket_red PF00248.16 gi|389847886|ref|YP_006350125.1| - 2.8e-74 249.4 0.0 3.2e-74 249.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Mu-like_gpT PF10124.4 gi|389847886|ref|YP_006350125.1| - 0.088 11.7 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Mu-like prophage major head subunit gpT EamA PF00892.15 gi|389847884|ref|YP_006350123.1| - 5e-29 100.8 22.8 2.5e-16 59.8 5.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|389847884|ref|YP_006350123.1| - 0.013 15.1 13.0 0.23 11.0 3.7 2.6 2 0 0 2 2 2 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|389847884|ref|YP_006350123.1| - 0.28 11.3 28.1 0.068 13.3 4.2 3.5 2 2 2 4 4 4 0 Multidrug resistance efflux transporter ABC_tran PF00005.22 gi|389847883|ref|YP_006350122.1| - 2.9e-31 108.5 0.0 4.5e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389847883|ref|YP_006350122.1| - 3.8e-20 72.0 0.3 3.8e-20 72.0 0.2 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389847883|ref|YP_006350122.1| - 2e-07 31.2 0.1 2.3e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|389847883|ref|YP_006350122.1| - 0.0019 18.3 0.3 0.012 15.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389847883|ref|YP_006350122.1| - 0.034 13.3 0.1 0.22 10.7 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389847883|ref|YP_006350122.1| - 0.035 13.6 0.2 0.065 12.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|389847883|ref|YP_006350122.1| - 0.072 12.8 0.1 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|389847883|ref|YP_006350122.1| - 0.08 12.8 0.1 0.37 10.7 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|389847883|ref|YP_006350122.1| - 0.093 11.9 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|389847883|ref|YP_006350122.1| - 0.1 11.9 0.3 6.6 6.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain AIG1 PF04548.11 gi|389847883|ref|YP_006350122.1| - 0.12 11.5 0.1 0.21 10.6 0.1 1.4 1 0 0 1 1 1 0 AIG1 family AAA_16 PF13191.1 gi|389847883|ref|YP_006350122.1| - 0.14 12.0 2.7 0.42 10.5 1.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain TPR_4 PF07721.9 gi|389847883|ref|YP_006350122.1| - 1.4 9.5 3.7 0.99 10.0 0.1 2.8 3 0 0 3 3 1 0 Tetratricopeptide repeat ABC_tran PF00005.22 gi|389847882|ref|YP_006350121.1| - 6.1e-25 88.1 0.0 1.1e-24 87.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|389847882|ref|YP_006350121.1| - 2.8e-19 69.2 0.0 5.4e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389847882|ref|YP_006350121.1| - 1.1e-09 38.6 0.2 4e-08 33.5 0.0 2.5 2 1 0 3 3 3 1 AAA domain AAA_15 PF13175.1 gi|389847882|ref|YP_006350121.1| - 0.00044 19.4 0.0 0.0028 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|389847882|ref|YP_006350121.1| - 0.00051 20.1 0.1 0.85 9.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|389847882|ref|YP_006350121.1| - 0.00062 19.2 0.3 0.17 11.3 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|389847882|ref|YP_006350121.1| - 0.0068 16.4 0.2 0.046 13.6 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|389847882|ref|YP_006350121.1| - 0.025 13.9 0.1 0.65 9.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|389847882|ref|YP_006350121.1| - 0.035 13.3 0.1 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389847882|ref|YP_006350121.1| - 0.055 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ResIII PF04851.10 gi|389847882|ref|YP_006350121.1| - 0.099 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|389847882|ref|YP_006350121.1| - 0.14 11.0 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Lyase_aromatic PF00221.14 gi|389847882|ref|YP_006350121.1| - 0.15 10.5 0.1 0.22 9.9 0.1 1.1 1 0 0 1 1 1 0 Aromatic amino acid lyase AAA_23 PF13476.1 gi|389847882|ref|YP_006350121.1| - 0.19 12.0 0.1 0.34 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|389847881|ref|YP_006350120.1| - 1.5e-32 112.6 10.0 1.5e-32 112.6 6.9 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389847881|ref|YP_006350120.1| - 4.8e-12 45.0 0.5 2e-11 43.0 0.1 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF4079 PF13301.1 gi|389847881|ref|YP_006350120.1| - 0.018 15.0 3.2 0.096 12.6 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4079) ETRAMP PF09716.5 gi|389847881|ref|YP_006350120.1| - 2.5 8.1 0.0 2.5 8.1 0.0 2.9 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) BPD_transp_1 PF00528.17 gi|389847880|ref|YP_006350119.1| - 2.2e-39 134.9 12.9 2.2e-39 134.9 8.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|389847879|ref|YP_006350118.1| - 4.7e-59 200.0 1.3 7.8e-59 199.3 0.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|389847879|ref|YP_006350118.1| - 0.00032 20.4 1.0 0.001 18.8 0.7 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RNase_H PF00075.19 gi|389847878|ref|YP_006350117.1| - 0.0024 18.2 0.0 0.0031 17.8 0.0 1.2 1 0 0 1 1 1 1 RNase H PTA_PTB PF01515.14 gi|389847877|ref|YP_006350116.1| - 1.2e-93 313.6 0.0 1.7e-93 313.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|389847877|ref|YP_006350116.1| - 2.4e-69 233.7 0.4 2.4e-69 233.7 0.3 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|389847877|ref|YP_006350116.1| - 1.3e-30 106.3 0.2 2.2e-28 99.0 0.1 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain HTH_31 PF13560.1 gi|389847877|ref|YP_006350116.1| - 0.032 14.4 0.1 0.4 10.9 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain Peptidase_M24 PF00557.19 gi|389847876|ref|YP_006350115.1| - 5.5e-19 68.5 1.6 7.4e-19 68.1 1.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 HD_4 PF13328.1 gi|389847876|ref|YP_006350115.1| - 0.039 13.6 0.1 0.093 12.4 0.0 1.7 1 1 0 1 1 1 0 HD domain COX15-CtaA PF02628.10 gi|662859549|ref|YP_006350114.2| - 1.4e-23 83.2 36.6 1.6e-21 76.4 25.2 2.7 1 1 1 2 2 2 1 Cytochrome oxidase assembly protein SBP_bac_3 PF00497.15 gi|389847874|ref|YP_006350113.1| - 8.7e-65 218.1 0.5 1e-64 217.8 0.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|389847874|ref|YP_006350113.1| - 0.00024 20.7 0.0 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|389847874|ref|YP_006350113.1| - 0.047 13.0 0.0 1.1 8.6 0.0 2.5 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|389847873|ref|YP_006350112.1| - 1.1e-19 70.7 7.1 1.1e-19 70.7 4.9 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|389847872|ref|YP_006350111.1| - 3.4e-36 124.5 0.0 4.3e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847872|ref|YP_006350111.1| - 5e-13 49.6 0.0 3.3e-06 27.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389847872|ref|YP_006350111.1| - 1.8e-09 37.1 0.1 3.5e-08 32.9 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|389847872|ref|YP_006350111.1| - 6.7e-06 26.2 0.1 1.6e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389847872|ref|YP_006350111.1| - 4.3e-05 22.9 0.0 8.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|389847872|ref|YP_006350111.1| - 0.00014 22.0 0.1 0.0005 20.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389847872|ref|YP_006350111.1| - 0.0002 20.9 0.0 0.0075 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|389847872|ref|YP_006350111.1| - 0.00034 19.8 0.0 0.00056 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|389847872|ref|YP_006350111.1| - 0.0006 19.5 0.0 0.02 14.5 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|389847872|ref|YP_006350111.1| - 0.00061 18.4 0.1 1.2 7.6 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|389847872|ref|YP_006350111.1| - 0.00074 18.9 0.0 0.0076 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|389847872|ref|YP_006350111.1| - 0.00077 19.8 0.0 0.0013 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389847872|ref|YP_006350111.1| - 0.0011 18.6 0.0 0.0047 16.6 0.0 2.0 2 1 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|389847872|ref|YP_006350111.1| - 0.0022 17.6 0.0 0.0037 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF3987 PF13148.1 gi|389847872|ref|YP_006350111.1| - 0.0045 15.6 0.0 0.0063 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) AAA_17 PF13207.1 gi|389847872|ref|YP_006350111.1| - 0.0078 17.0 0.0 0.015 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|389847872|ref|YP_006350111.1| - 0.012 15.0 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 MutS domain V MMR_HSR1 PF01926.18 gi|389847872|ref|YP_006350111.1| - 0.012 15.5 0.0 0.035 14.0 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|389847872|ref|YP_006350111.1| - 0.019 14.6 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|389847872|ref|YP_006350111.1| - 0.019 14.8 0.1 0.036 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|389847872|ref|YP_006350111.1| - 0.028 14.6 0.1 0.55 10.4 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|389847872|ref|YP_006350111.1| - 0.042 13.7 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|389847872|ref|YP_006350111.1| - 0.05 12.4 0.0 0.23 10.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.1 gi|389847872|ref|YP_006350111.1| - 0.055 13.3 0.2 0.63 10.0 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|389847872|ref|YP_006350111.1| - 0.065 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|389847872|ref|YP_006350111.1| - 0.071 12.8 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|389847872|ref|YP_006350111.1| - 0.076 11.8 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|389847872|ref|YP_006350111.1| - 0.084 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|389847872|ref|YP_006350111.1| - 0.085 12.2 0.0 0.19 11.1 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein PEPCK_ATP PF01293.15 gi|389847872|ref|YP_006350111.1| - 0.11 10.9 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase TK PF00265.13 gi|389847872|ref|YP_006350111.1| - 0.13 11.8 0.0 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase Lar_restr_allev PF14354.1 gi|389847871|ref|YP_006350110.1| - 0.00088 19.5 0.5 0.0012 19.1 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|389847871|ref|YP_006350110.1| - 0.0012 18.6 0.1 0.0015 18.2 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|389847871|ref|YP_006350110.1| - 0.014 14.5 0.2 1.9 7.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|389847871|ref|YP_006350110.1| - 0.017 14.8 6.2 0.041 13.5 4.3 1.6 1 1 0 1 1 1 0 Nudix N-terminal UPF0547 PF10571.4 gi|389847871|ref|YP_006350110.1| - 0.019 14.6 1.3 0.24 11.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Mut7-C PF01927.11 gi|389847871|ref|YP_006350110.1| - 0.029 14.3 0.9 0.064 13.2 0.6 1.6 1 1 0 1 1 1 0 Mut7-C RNAse domain HypA PF01155.14 gi|389847871|ref|YP_006350110.1| - 0.031 13.9 0.2 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PHD PF00628.24 gi|389847871|ref|YP_006350110.1| - 0.035 13.7 1.6 0.13 11.9 1.1 1.8 1 1 0 1 1 1 0 PHD-finger A2L_zn_ribbon PF08792.5 gi|389847871|ref|YP_006350110.1| - 0.044 13.2 0.9 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain GFA PF04828.9 gi|389847871|ref|YP_006350110.1| - 0.067 13.1 0.9 1.4 8.8 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.6 gi|389847871|ref|YP_006350110.1| - 0.068 12.8 1.5 0.83 9.3 1.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.1 gi|389847871|ref|YP_006350110.1| - 0.08 12.7 0.8 8.5 6.2 0.0 2.2 1 1 1 2 2 2 0 Zinc-ribbon Ribosomal_S27e PF01667.12 gi|389847871|ref|YP_006350110.1| - 0.081 12.4 0.5 11 5.5 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zf-dskA_traR PF01258.12 gi|389847871|ref|YP_006350110.1| - 0.092 12.5 1.3 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger C1_1 PF00130.17 gi|389847871|ref|YP_006350110.1| - 0.094 12.4 0.0 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) ADK_lid PF05191.9 gi|389847871|ref|YP_006350110.1| - 0.11 12.1 1.9 5.5 6.7 0.1 2.3 1 1 1 2 2 2 0 Adenylate kinase, active site lid RNA_POL_M_15KD PF02150.11 gi|389847871|ref|YP_006350110.1| - 0.11 12.1 1.6 8.9 6.1 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_ribbon_recom PF13408.1 gi|389847871|ref|YP_006350110.1| - 0.12 12.6 0.2 0.43 10.8 0.2 1.7 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_4 PF13717.1 gi|389847871|ref|YP_006350110.1| - 0.15 11.7 0.5 0.42 10.3 0.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-B_box PF00643.19 gi|389847871|ref|YP_006350110.1| - 0.16 11.8 1.1 0.74 9.7 0.0 2.0 2 0 0 2 2 2 0 B-box zinc finger NOB1_Zn_bind PF08772.6 gi|389847871|ref|YP_006350110.1| - 0.37 10.6 1.6 2 8.2 0.2 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|389847871|ref|YP_006350110.1| - 0.52 10.3 4.3 7.4 6.6 2.9 2.3 1 1 1 2 2 2 0 Zinc ribbon domain AAA PF00004.24 gi|389847870|ref|YP_006350109.1| - 9.6e-11 42.0 0.0 4.7e-10 39.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|389847870|ref|YP_006350109.1| - 4.3e-06 25.9 0.0 7.8e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|389847870|ref|YP_006350109.1| - 1.1e-05 24.3 0.0 0.015 14.0 0.0 2.4 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|389847870|ref|YP_006350109.1| - 2.7e-05 24.3 0.0 0.00056 20.0 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389847870|ref|YP_006350109.1| - 0.00049 20.1 0.2 0.047 13.6 0.0 2.8 1 1 2 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|389847870|ref|YP_006350109.1| - 0.00051 20.8 5.2 0.0078 17.0 1.4 3.3 2 2 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|389847870|ref|YP_006350109.1| - 0.00097 18.2 0.0 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|389847870|ref|YP_006350109.1| - 0.001 18.4 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|389847870|ref|YP_006350109.1| - 0.003 17.8 0.1 0.56 10.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|389847870|ref|YP_006350109.1| - 0.0069 16.3 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|389847870|ref|YP_006350109.1| - 0.0078 15.8 0.0 0.065 12.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_14 PF13173.1 gi|389847870|ref|YP_006350109.1| - 0.0098 15.7 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|389847870|ref|YP_006350109.1| - 0.013 15.6 0.0 0.045 13.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.1 gi|389847870|ref|YP_006350109.1| - 0.014 15.0 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|389847870|ref|YP_006350109.1| - 0.017 14.6 1.0 0.082 12.4 0.8 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|389847870|ref|YP_006350109.1| - 0.018 14.9 0.2 0.063 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|389847870|ref|YP_006350109.1| - 0.043 13.2 0.3 0.62 9.4 0.0 2.7 1 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|389847870|ref|YP_006350109.1| - 0.057 12.5 0.0 0.13 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|389847870|ref|YP_006350109.1| - 0.081 12.6 0.0 0.29 10.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|389847870|ref|YP_006350109.1| - 0.11 12.1 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Miro PF08477.8 gi|389847870|ref|YP_006350109.1| - 0.11 12.9 0.0 2.6 8.5 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein HTH_20 PF12840.2 gi|389847869|ref|YP_006350108.1| - 2.3e-12 46.5 0.4 4.8e-12 45.4 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|389847869|ref|YP_006350108.1| - 8e-08 31.8 0.6 6.4e-07 28.9 0.4 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|389847869|ref|YP_006350108.1| - 1.1e-05 25.0 2.8 4.1e-05 23.2 0.5 2.3 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain PqqD PF05402.7 gi|389847869|ref|YP_006350108.1| - 0.00065 19.6 2.2 0.0099 15.8 0.1 2.5 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) DUF2383 PF09537.5 gi|389847869|ref|YP_006350108.1| - 0.0072 16.5 0.5 0.037 14.2 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) TFIIE_alpha PF02002.12 gi|389847869|ref|YP_006350108.1| - 0.0096 15.4 0.5 0.022 14.2 0.3 1.7 1 1 0 1 1 1 1 TFIIE alpha subunit FUR PF01475.14 gi|389847869|ref|YP_006350108.1| - 0.011 15.5 0.3 0.019 14.8 0.2 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family Penicillinase_R PF03965.11 gi|389847869|ref|YP_006350108.1| - 0.03 14.4 0.4 0.12 12.5 0.3 2.0 1 1 1 2 2 2 0 Penicillinase repressor HTH_32 PF13565.1 gi|389847869|ref|YP_006350108.1| - 0.037 14.8 0.7 0.18 12.5 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HisKA_2 PF07568.7 gi|389847869|ref|YP_006350108.1| - 0.05 13.4 0.5 0.23 11.3 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase TrmB PF01978.14 gi|389847869|ref|YP_006350108.1| - 0.065 12.9 0.2 0.21 11.2 0.0 2.0 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPN7 PF10602.4 gi|389847869|ref|YP_006350108.1| - 0.074 12.4 1.5 0.14 11.5 0.1 1.8 2 0 0 2 2 2 0 26S proteasome subunit RPN7 PadR PF03551.9 gi|389847869|ref|YP_006350108.1| - 0.096 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Inhibitor_I9 PF05922.11 gi|389847869|ref|YP_006350108.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.6 1 1 0 1 1 1 0 Peptidase inhibitor I9 DUF3486 PF11985.3 gi|389847869|ref|YP_006350108.1| - 0.14 12.2 2.3 0.21 11.6 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3486) DUF883 PF05957.8 gi|389847869|ref|YP_006350108.1| - 0.18 12.2 1.3 16 5.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) HTH_11 PF08279.7 gi|389847869|ref|YP_006350108.1| - 0.21 11.2 0.8 28 4.4 0.0 2.8 3 0 0 3 3 3 0 HTH domain ARGLU PF15346.1 gi|389847869|ref|YP_006350108.1| - 0.98 9.1 8.5 4.2 7.1 5.8 1.8 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 E1-E2_ATPase PF00122.15 gi|389847868|ref|YP_006350107.1| - 3.8e-49 166.8 0.1 8.8e-49 165.6 0.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|389847868|ref|YP_006350107.1| - 5.4e-46 157.7 8.7 5.4e-46 157.7 6.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389847868|ref|YP_006350107.1| - 1.5e-13 51.3 1.0 4.6e-13 49.7 0.7 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|389847868|ref|YP_006350107.1| - 1.8e-09 37.6 0.4 4.8e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|389847868|ref|YP_006350107.1| - 4.7e-05 23.0 0.5 0.00019 21.1 0.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase MarR_2 PF12802.2 gi|389847867|ref|YP_006350106.1| - 5.8e-06 25.8 0.1 1.5e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|389847867|ref|YP_006350106.1| - 6.1e-06 25.7 0.0 1.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|389847867|ref|YP_006350106.1| - 1.3e-05 24.6 0.6 2.6e-05 23.7 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|389847867|ref|YP_006350106.1| - 4.2e-05 23.1 0.0 0.00011 21.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|389847867|ref|YP_006350106.1| - 8.6e-05 22.0 0.0 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|389847867|ref|YP_006350106.1| - 0.0002 21.0 0.0 0.00039 20.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|389847867|ref|YP_006350106.1| - 0.00021 20.5 0.1 0.00041 19.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|389847867|ref|YP_006350106.1| - 0.0007 19.5 0.3 0.0013 18.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|389847867|ref|YP_006350106.1| - 0.0015 18.7 0.0 0.0033 17.6 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|389847867|ref|YP_006350106.1| - 0.0037 17.3 0.7 0.0071 16.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_27 PF13463.1 gi|389847867|ref|YP_006350106.1| - 0.0046 17.2 0.1 0.0098 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|389847867|ref|YP_006350106.1| - 0.0061 16.3 0.1 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|389847867|ref|YP_006350106.1| - 0.013 15.3 0.4 0.035 13.9 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|389847867|ref|YP_006350106.1| - 0.015 15.1 0.0 0.039 13.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.7 gi|389847867|ref|YP_006350106.1| - 0.041 13.5 0.2 0.11 12.1 0.1 1.8 2 0 0 2 2 1 0 HTH domain DUF1724 PF08350.5 gi|389847867|ref|YP_006350106.1| - 0.06 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_7 PF02796.10 gi|389847867|ref|YP_006350106.1| - 0.1 12.5 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase adh_short_C2 PF13561.1 gi|389847866|ref|YP_006350105.1| - 2.2e-31 109.4 0.2 2.7e-31 109.2 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|389847866|ref|YP_006350105.1| - 2e-28 99.3 2.4 2.5e-28 99.0 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|389847866|ref|YP_006350105.1| - 1.4e-14 54.2 0.9 1.9e-14 53.7 0.6 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|389847866|ref|YP_006350105.1| - 2.5e-05 23.8 0.8 0.00035 20.0 0.5 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389847866|ref|YP_006350105.1| - 0.00021 20.0 0.3 0.00038 19.2 0.2 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 2-Hacid_dh_C PF02826.14 gi|389847866|ref|YP_006350105.1| - 0.017 14.2 0.0 0.099 11.7 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.10 gi|389847866|ref|YP_006350105.1| - 0.024 14.2 2.1 0.37 10.3 1.1 2.4 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NAD_binding_10 PF13460.1 gi|389847866|ref|YP_006350105.1| - 0.07 13.1 2.0 0.11 12.4 1.4 1.5 1 1 0 1 1 1 0 NADH(P)-binding NmrA PF05368.8 gi|389847866|ref|YP_006350105.1| - 0.13 11.4 0.8 0.22 10.7 0.6 1.3 1 0 0 1 1 1 0 NmrA-like family Pyr_redox PF00070.22 gi|389847866|ref|YP_006350105.1| - 0.27 11.6 1.5 2.2 8.7 0.4 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase LtrA PF06772.6 gi|389847865|ref|YP_006350104.1| - 6.4e-61 206.2 21.4 7.4e-61 206.0 14.8 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) Acetyltransf_3 PF13302.1 gi|662859548|ref|YP_006350103.2| - 5.5e-18 65.5 0.1 7.1e-18 65.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|662859548|ref|YP_006350103.2| - 0.0091 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|389847863|ref|YP_006350102.1| - 3.1e-21 76.0 0.0 4.2e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847863|ref|YP_006350102.1| - 0.00047 20.1 0.1 0.00073 19.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|389847863|ref|YP_006350102.1| - 0.00081 19.3 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain RseC_MucC PF04246.7 gi|389847862|ref|YP_006350101.1| - 0.9 9.1 9.1 6.7 6.2 3.8 2.4 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Acetyltransf_1 PF00583.19 gi|389847861|ref|YP_006350100.1| - 9.1e-14 51.2 0.0 1.6e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847861|ref|YP_006350100.1| - 4.1e-13 49.4 0.0 5.3e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389847861|ref|YP_006350100.1| - 1.5e-08 34.9 0.0 3.3e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389847861|ref|YP_006350100.1| - 3.8e-08 33.3 0.0 7.1e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847861|ref|YP_006350100.1| - 1.2e-07 31.7 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847861|ref|YP_006350100.1| - 1.4e-05 24.9 0.0 2.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|389847861|ref|YP_006350100.1| - 5.7e-05 22.9 0.3 0.0002 21.2 0.1 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389847861|ref|YP_006350100.1| - 0.0034 17.3 0.0 0.0052 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847861|ref|YP_006350100.1| - 0.0039 16.8 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein DUF457 PF04307.9 gi|389847860|ref|YP_006350099.1| - 1.7e-13 50.2 4.4 1.9e-13 50.0 3.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HTH_31 PF13560.1 gi|389847859|ref|YP_006350098.1| - 2.6e-09 37.1 0.1 8.4e-09 35.5 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|389847859|ref|YP_006350098.1| - 1.7e-08 34.1 0.0 4.3e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|389847859|ref|YP_006350098.1| - 3.1e-08 33.5 0.0 6.4e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|389847859|ref|YP_006350098.1| - 0.026 14.6 0.0 0.092 12.9 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|389847859|ref|YP_006350098.1| - 0.027 14.2 0.0 0.061 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|389847859|ref|YP_006350098.1| - 0.049 13.2 0.1 0.47 10.1 0.0 2.3 2 0 0 2 2 2 0 HTH domain HMG_CoA_synt_N PF01154.12 gi|389847857|ref|YP_006350096.1| - 1.6e-27 96.1 0.0 2.4e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|389847857|ref|YP_006350096.1| - 4.2e-21 75.6 0.0 9.2e-21 74.5 0.0 1.4 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Glucosaminidase PF01832.15 gi|389847857|ref|YP_006350096.1| - 0.026 14.6 0.0 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Big_1 PF02369.11 gi|389847856|ref|YP_006350095.1| - 1.4e-08 34.4 0.7 1.4e-08 34.4 0.5 5.2 6 0 0 6 6 6 2 Bacterial Ig-like domain (group 1) DUF461 PF04314.8 gi|389847856|ref|YP_006350095.1| - 0.047 13.3 0.1 3.1 7.5 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF461) DUF1628 PF07790.6 gi|389847856|ref|YP_006350095.1| - 6.4 7.5 10.8 0.83 10.4 0.1 4.4 5 1 0 6 6 6 0 Protein of unknown function (DUF1628) FtsH_ext PF06480.10 gi|389847856|ref|YP_006350095.1| - 8.3 6.6 10.5 0.15 12.2 0.8 3.0 3 0 0 3 3 3 0 FtsH Extracellular DUF2150 PF09920.4 gi|389847855|ref|YP_006350094.1| - 8.3e-60 201.6 9.9 9.5e-60 201.4 6.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Imm5 PF14423.1 gi|389847855|ref|YP_006350094.1| - 0.064 12.8 3.0 0.059 12.9 1.1 1.6 1 1 1 2 2 2 0 Immunity protein Imm5 TatD_DNase PF01026.16 gi|389847854|ref|YP_006350093.1| - 2.4e-20 72.8 0.0 7.4e-19 67.9 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase NYN PF01936.13 gi|389847853|ref|YP_006350092.1| - 3e-18 66.5 0.1 3.6e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.1 gi|389847853|ref|YP_006350092.1| - 0.0012 18.2 0.0 0.0015 17.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain AP_endonuc_2 PF01261.19 gi|389847853|ref|YP_006350092.1| - 0.0014 17.9 0.3 0.003 16.8 0.2 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Hydrolase_like PF13242.1 gi|389847853|ref|YP_006350092.1| - 0.037 13.7 0.2 0.086 12.5 0.1 1.7 1 1 1 2 2 2 0 HAD-hyrolase-like TPK_catalytic PF04263.11 gi|389847853|ref|YP_006350092.1| - 0.059 12.9 0.1 0.078 12.5 0.1 1.2 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain Peptidase_S8 PF00082.17 gi|389847852|ref|YP_006350091.1| - 7.6e-56 189.3 12.5 1.3e-55 188.6 8.6 1.4 1 0 0 1 1 1 1 Subtilase family PPC PF04151.10 gi|389847852|ref|YP_006350091.1| - 6e-05 23.9 0.6 6e-05 23.9 0.4 3.3 2 1 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain GTP_EFTU PF00009.22 gi|389847850|ref|YP_006350089.1| - 7.2e-58 195.1 0.0 9e-58 194.8 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|389847850|ref|YP_006350089.1| - 1.2e-29 102.3 0.0 3e-29 101.0 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|389847850|ref|YP_006350089.1| - 2.9e-18 65.7 3.5 1.4e-17 63.5 1.4 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|389847850|ref|YP_006350089.1| - 4.6e-09 36.2 0.0 1.2e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|389847850|ref|YP_006350089.1| - 1.7e-05 25.2 0.1 0.00094 19.6 0.0 3.2 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|389847850|ref|YP_006350089.1| - 2e-05 24.1 0.4 6.3e-05 22.5 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Ras PF00071.17 gi|389847850|ref|YP_006350089.1| - 0.00061 19.2 1.0 0.0027 17.1 0.3 2.1 2 1 0 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|389847850|ref|YP_006350089.1| - 0.00083 19.2 0.2 0.4 10.5 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Gtr1_RagA PF04670.7 gi|389847850|ref|YP_006350089.1| - 0.0018 17.4 0.0 0.37 9.9 0.0 2.2 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region Septin PF00735.13 gi|389847850|ref|YP_006350089.1| - 0.0064 15.5 0.2 0.014 14.4 0.0 1.6 2 0 0 2 2 2 1 Septin FeoB_N PF02421.13 gi|389847850|ref|YP_006350089.1| - 0.012 14.9 0.4 0.3 10.3 0.3 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|389847850|ref|YP_006350089.1| - 0.016 14.4 0.1 0.57 9.3 0.0 2.3 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit NTP_transf_3 PF12804.2 gi|389847850|ref|YP_006350089.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain tRNA-synt_2b PF00587.20 gi|389847849|ref|YP_006350088.1| - 5.5e-32 110.7 0.0 7e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|389847849|ref|YP_006350088.1| - 4e-09 36.2 0.0 7.4e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain PAS_9 PF13426.1 gi|389847848|ref|YP_006350087.1| - 1.5e-50 169.8 0.4 1.6e-24 86.3 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|389847848|ref|YP_006350087.1| - 2.2e-32 111.1 0.3 3.3e-13 49.4 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|389847848|ref|YP_006350087.1| - 1.8e-31 108.4 3.6 9.8e-13 48.1 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|389847848|ref|YP_006350087.1| - 4.6e-20 70.7 0.0 5e-06 26.1 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|389847848|ref|YP_006350087.1| - 1.2e-19 70.1 1.1 3.1e-11 43.2 0.1 3.7 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|389847848|ref|YP_006350087.1| - 4.4e-18 64.5 0.0 9.2e-18 63.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|389847848|ref|YP_006350087.1| - 8.3e-12 45.8 0.1 2.6e-11 44.2 0.1 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|389847848|ref|YP_006350087.1| - 1.5e-07 31.6 0.0 3.7e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|389847848|ref|YP_006350087.1| - 4.1e-07 30.1 0.1 1.3e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|389847848|ref|YP_006350087.1| - 6.1e-06 26.2 1.9 0.18 11.8 0.0 4.3 3 2 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|389847848|ref|YP_006350087.1| - 7.4e-05 22.9 0.1 0.085 13.1 0.0 3.0 3 0 0 3 3 2 2 PAS domain PAS_11 PF14598.1 gi|389847848|ref|YP_006350087.1| - 0.026 14.4 0.0 0.37 10.7 0.0 2.7 3 0 0 3 3 3 0 PAS domain Sigma70_r4 PF04545.11 gi|389847848|ref|YP_006350087.1| - 0.07 12.4 3.7 0.26 10.6 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|389847848|ref|YP_006350087.1| - 0.14 11.8 0.0 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 HTH domain Phytoreo_S7 PF07236.6 gi|389847847|ref|YP_006350086.1| - 0.0046 15.3 0.1 0.0051 15.1 0.1 1.0 1 0 0 1 1 1 1 Phytoreovirus S7 protein Imm15 PF15590.1 gi|389847844|ref|YP_006350083.1| - 0.1 11.6 0.5 0.18 10.9 0.4 1.4 1 0 0 1 1 1 0 Immunity protein 15 GCV_T PF01571.16 gi|389847843|ref|YP_006350082.1| - 8.3e-68 227.8 0.0 1.1e-67 227.4 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|389847843|ref|YP_006350082.1| - 1.7e-27 95.2 0.1 3e-27 94.4 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|389847843|ref|YP_006350082.1| - 6.9e-05 22.7 0.1 0.1 12.4 0.0 2.2 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.4 gi|389847843|ref|YP_006350082.1| - 0.00024 21.0 0.0 0.048 13.6 0.0 2.5 3 0 0 3 3 3 2 GTP-binding protein TrmE N-terminus GCV_H PF01597.14 gi|389847842|ref|YP_006350081.1| - 9e-45 151.2 0.0 1e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|389847842|ref|YP_006350081.1| - 0.00031 20.2 0.0 0.0059 16.2 0.0 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|389847842|ref|YP_006350081.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.11 gi|389847841|ref|YP_006350080.1| - 1e-108 363.8 0.0 1.2e-108 363.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|389847841|ref|YP_006350080.1| - 0.00035 18.9 0.0 0.00044 18.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|389847841|ref|YP_006350080.1| - 0.004 15.9 0.0 0.0085 14.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_5 PF00266.14 gi|389847840|ref|YP_006350079.1| - 2.8e-10 39.5 0.0 4.8e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|389847840|ref|YP_006350079.1| - 1.1e-08 34.2 0.0 3.8e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|389847840|ref|YP_006350079.1| - 0.0031 16.7 0.0 0.0048 16.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|389847840|ref|YP_006350079.1| - 0.0083 15.1 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|389847840|ref|YP_006350079.1| - 0.067 12.2 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Zn_Tnp_IS1595 PF12760.2 gi|389847839|ref|YP_006350078.1| - 0.00047 19.8 0.4 0.00061 19.5 0.3 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|389847839|ref|YP_006350078.1| - 0.002 18.4 0.3 0.002 18.3 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|389847839|ref|YP_006350078.1| - 0.0029 17.6 0.2 0.85 9.7 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.1 gi|389847839|ref|YP_006350078.1| - 0.0078 16.4 2.8 0.069 13.4 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger double domain TerY-C PF15616.1 gi|389847839|ref|YP_006350078.1| - 0.038 13.9 0.0 0.039 13.8 0.0 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain RNA_POL_M_15KD PF02150.11 gi|389847839|ref|YP_006350078.1| - 0.054 13.1 1.7 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|389847839|ref|YP_006350078.1| - 0.056 13.4 0.5 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-MIZ PF02891.15 gi|389847839|ref|YP_006350078.1| - 0.065 12.7 0.5 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-NADH-PPase PF09297.6 gi|389847839|ref|YP_006350078.1| - 0.068 12.7 0.2 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|389847839|ref|YP_006350078.1| - 0.094 12.6 3.6 1.5 8.7 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin DUF3797 PF12677.2 gi|389847839|ref|YP_006350078.1| - 0.11 12.1 1.7 0.36 10.4 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) RRN7 PF11781.3 gi|389847839|ref|YP_006350078.1| - 0.13 11.8 0.8 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF983 PF06170.7 gi|389847839|ref|YP_006350078.1| - 0.15 12.2 0.3 7.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF3279 PF11682.3 gi|389847839|ref|YP_006350078.1| - 0.2 11.1 1.8 0.32 10.5 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3279) zf-RanBP PF00641.13 gi|389847839|ref|YP_006350078.1| - 1.2 8.3 6.9 4.3 6.5 1.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF3188 PF11384.3 gi|389847838|ref|YP_006350077.1| - 2.4 7.7 4.8 1.7 8.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) APH PF01636.18 gi|389847837|ref|YP_006350076.1| - 4.2e-16 59.4 1.1 6.9e-16 58.7 0.6 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family SpoIIAA-like PF11964.3 gi|389847836|ref|YP_006350075.1| - 0.0074 16.5 0.0 0.011 16.0 0.0 1.3 1 1 0 1 1 1 1 SpoIIAA-like ABC-3 PF00950.12 gi|389847835|ref|YP_006350074.1| - 5.8e-59 199.4 42.4 7e-59 199.2 29.4 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|389847835|ref|YP_006350074.1| - 1.7e-05 23.8 36.2 1.7e-05 23.8 25.1 1.7 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.1 gi|389847835|ref|YP_006350074.1| - 0.084 12.7 1.1 0.23 11.3 0.7 1.7 1 0 0 1 1 1 0 DUF2407 C-terminal domain ABC_tran PF00005.22 gi|389847834|ref|YP_006350073.1| - 2.3e-32 112.1 0.0 3.1e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847834|ref|YP_006350073.1| - 1.2e-11 45.1 0.0 9.7e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389847834|ref|YP_006350073.1| - 2.1e-05 23.9 0.0 4.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|389847834|ref|YP_006350073.1| - 3.8e-05 23.0 0.3 0.00075 18.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|389847834|ref|YP_006350073.1| - 5.1e-05 23.3 0.4 0.00026 21.0 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|389847834|ref|YP_006350073.1| - 0.0003 20.3 0.2 0.0012 18.3 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|389847834|ref|YP_006350073.1| - 0.00052 20.3 0.0 0.00072 19.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389847834|ref|YP_006350073.1| - 0.00072 19.2 0.0 0.002 17.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain SbcCD_C PF13558.1 gi|389847834|ref|YP_006350073.1| - 0.0014 18.4 0.7 0.028 14.3 0.5 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|389847834|ref|YP_006350073.1| - 0.0016 18.5 0.3 0.021 14.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|389847834|ref|YP_006350073.1| - 0.0023 16.5 0.1 1.3 7.5 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|389847834|ref|YP_006350073.1| - 0.0027 18.5 0.3 0.02 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|389847834|ref|YP_006350073.1| - 0.0049 16.5 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|389847834|ref|YP_006350073.1| - 0.0078 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|389847834|ref|YP_006350073.1| - 0.0078 16.0 0.0 0.015 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|389847834|ref|YP_006350073.1| - 0.0085 15.6 0.0 0.029 13.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389847834|ref|YP_006350073.1| - 0.014 14.7 0.1 0.062 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Spore_IV_A PF09547.5 gi|389847834|ref|YP_006350073.1| - 0.023 13.4 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.10 gi|389847834|ref|YP_006350073.1| - 0.026 14.2 0.0 0.054 13.1 0.0 1.7 1 1 0 1 1 1 0 NTPase Arch_ATPase PF01637.13 gi|389847834|ref|YP_006350073.1| - 0.034 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF87 PF01935.12 gi|389847834|ref|YP_006350073.1| - 0.036 13.8 0.0 0.079 12.7 0.0 1.5 2 0 0 2 2 1 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|389847834|ref|YP_006350073.1| - 0.057 12.6 0.0 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|389847834|ref|YP_006350073.1| - 0.059 13.3 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|389847834|ref|YP_006350073.1| - 0.13 11.4 0.0 0.48 9.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|389847834|ref|YP_006350073.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family cobW PF02492.14 gi|389847834|ref|YP_006350073.1| - 0.13 11.6 0.0 0.37 10.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|389847834|ref|YP_006350073.1| - 0.18 11.1 0.3 13 5.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|389847834|ref|YP_006350073.1| - 0.18 11.9 0.0 0.37 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TroA PF01297.12 gi|389847833|ref|YP_006350072.1| - 4.6e-45 153.8 0.2 5.8e-45 153.5 0.1 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|389847833|ref|YP_006350072.1| - 0.18 11.9 5.0 0.33 11.0 3.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glutaredoxin PF00462.19 gi|389847832|ref|YP_006350071.1| - 2.3e-15 56.3 0.0 3.1e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|389847832|ref|YP_006350071.1| - 1e-14 54.5 0.0 1.1e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|389847832|ref|YP_006350071.1| - 2.9e-11 43.2 0.0 3.2e-11 43.0 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|389847832|ref|YP_006350071.1| - 1.1e-06 28.7 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|389847832|ref|YP_006350071.1| - 0.0022 18.2 0.0 0.0026 17.9 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Cob_adeno_trans PF01923.13 gi|389847831|ref|YP_006350070.1| - 2.5e-58 196.4 0.0 2.8e-58 196.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase G6PD_C PF02781.11 gi|389847831|ref|YP_006350070.1| - 0.032 13.1 0.0 0.043 12.6 0.0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, C-terminal domain Tropomyosin_1 PF12718.2 gi|389847831|ref|YP_006350070.1| - 0.092 12.5 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Tropomyosin like Ceramidase_alk PF04734.8 gi|389847830|ref|YP_006350069.1| - 0.0017 16.3 0.0 0.0021 16.0 0.0 1.2 1 0 0 1 1 1 1 Neutral/alkaline non-lysosomal ceramidase Colicin_V PF02674.11 gi|662859547|ref|YP_006350068.2| - 0.028 14.2 0.7 0.034 14.0 0.5 1.1 1 0 0 1 1 1 0 Colicin V production protein Baculo_11_kDa PF06143.6 gi|662859547|ref|YP_006350068.2| - 0.11 11.8 0.4 0.15 11.4 0.3 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family CBS PF00571.23 gi|389847827|ref|YP_006350066.1| - 3.8e-42 141.8 7.0 4.4e-15 55.1 0.2 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|389847827|ref|YP_006350066.1| - 0.00026 21.3 0.8 0.033 14.6 0.0 2.6 2 0 0 2 2 2 2 Sigma 54 modulation protein / S30EA ribosomal protein Paramyx_P_V_C PF03210.8 gi|389847827|ref|YP_006350066.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Paramyxovirus P/V phosphoprotein C-terminal Rad51 PF08423.6 gi|662859546|ref|YP_006350065.2| - 1.1e-32 112.9 0.1 1.4e-32 112.6 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|662859546|ref|YP_006350065.2| - 1.3e-17 63.8 0.3 1.7e-17 63.4 0.2 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|662859546|ref|YP_006350065.2| - 4.5e-12 45.6 0.1 5.2e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|662859546|ref|YP_006350065.2| - 2e-10 40.1 0.0 1.3e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|662859546|ref|YP_006350065.2| - 6.2e-10 38.8 0.0 6.8e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|662859546|ref|YP_006350065.2| - 0.0022 17.5 0.3 0.13 11.6 0.0 2.4 1 1 2 3 3 3 1 AAA-like domain AAA_24 PF13479.1 gi|662859546|ref|YP_006350065.2| - 0.0028 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|662859546|ref|YP_006350065.2| - 0.0052 16.5 0.7 0.013 15.2 0.1 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|662859546|ref|YP_006350065.2| - 0.015 15.2 0.3 0.02 14.8 0.2 1.2 1 0 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|662859546|ref|YP_006350065.2| - 0.024 14.0 0.3 0.059 12.7 0.1 1.7 1 1 1 2 2 2 0 IstB-like ATP binding protein CobU PF02283.11 gi|662859546|ref|YP_006350065.2| - 0.03 13.7 0.6 0.14 11.5 0.4 1.9 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Arch_ATPase PF01637.13 gi|662859546|ref|YP_006350065.2| - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|662859546|ref|YP_006350065.2| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 1 0 1 1 1 0 ABC transporter DUF460 PF04312.8 gi|389847825|ref|YP_006350064.1| - 0.004 16.6 0.4 0.0069 15.9 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) YbbR PF07949.7 gi|389847825|ref|YP_006350064.1| - 0.023 14.8 0.3 0.059 13.4 0.1 1.8 2 0 0 2 2 2 0 YbbR-like protein Big_3_3 PF13750.1 gi|389847825|ref|YP_006350064.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Abhydrolase_6 PF12697.2 gi|389847824|ref|YP_006350063.1| - 1e-37 130.2 0.9 1.7e-37 129.4 0.6 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389847824|ref|YP_006350063.1| - 5.9e-23 81.6 0.0 1.7e-22 80.1 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389847824|ref|YP_006350063.1| - 9e-13 48.1 0.0 1.6e-12 47.3 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|389847824|ref|YP_006350063.1| - 0.00044 20.0 0.0 0.0017 18.1 0.0 2.0 1 1 1 2 2 2 1 Putative lysophospholipase Ndr PF03096.9 gi|389847824|ref|YP_006350063.1| - 0.0008 17.9 0.0 0.0012 17.4 0.0 1.1 1 0 0 1 1 1 1 Ndr family DUF1057 PF06342.7 gi|389847824|ref|YP_006350063.1| - 0.013 14.3 0.0 0.018 13.8 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) FSH1 PF03959.8 gi|389847824|ref|YP_006350063.1| - 0.073 12.5 0.0 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PAF-AH_p_II PF03403.8 gi|389847824|ref|YP_006350063.1| - 0.15 10.3 0.0 0.2 9.9 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF111 PF01969.12 gi|389847823|ref|YP_006350062.1| - 1.7e-133 445.1 1.1 2.1e-133 444.8 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 Zip PF02535.17 gi|389847823|ref|YP_006350062.1| - 1.1 8.1 12.4 1.7 7.5 8.6 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter AAA PF00004.24 gi|389847822|ref|YP_006350061.1| - 2.7e-101 335.0 0.0 1.4e-49 167.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|389847822|ref|YP_006350061.1| - 4.2e-30 103.5 0.0 2.6e-29 101.0 0.0 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_5 PF07728.9 gi|389847822|ref|YP_006350061.1| - 1.8e-15 56.8 1.6 7.3e-07 28.9 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|389847822|ref|YP_006350061.1| - 4.2e-15 55.4 0.0 5.2e-07 28.9 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|389847822|ref|YP_006350061.1| - 5.1e-15 55.9 0.1 2.2e-07 31.0 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|389847822|ref|YP_006350061.1| - 5.8e-14 52.3 1.2 0.00063 19.8 0.0 5.3 3 2 1 4 4 4 2 AAA domain AAA_17 PF13207.1 gi|389847822|ref|YP_006350061.1| - 4.2e-13 50.1 0.0 8.2e-05 23.4 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|389847822|ref|YP_006350061.1| - 7e-13 48.8 0.0 9.9e-06 25.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|389847822|ref|YP_006350061.1| - 1.1e-12 47.3 0.2 7.3e-12 44.7 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.8 gi|389847822|ref|YP_006350061.1| - 1.2e-11 43.9 0.0 2.4e-05 23.2 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|389847822|ref|YP_006350061.1| - 3.1e-11 43.3 0.0 3.5e-05 23.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|389847822|ref|YP_006350061.1| - 1.6e-09 37.7 0.0 0.0021 17.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|389847822|ref|YP_006350061.1| - 8.3e-09 35.1 0.0 0.0036 16.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|389847822|ref|YP_006350061.1| - 9.7e-09 34.8 4.1 0.0016 18.1 0.1 3.1 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|389847822|ref|YP_006350061.1| - 1.9e-08 33.6 0.1 0.0022 17.0 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_18 PF13238.1 gi|389847822|ref|YP_006350061.1| - 2.8e-08 34.1 0.0 0.0042 17.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389847822|ref|YP_006350061.1| - 1.5e-07 31.0 7.0 1 8.6 0.1 4.4 2 2 2 4 4 4 3 AAA domain Sigma54_activat PF00158.21 gi|389847822|ref|YP_006350061.1| - 1.9e-07 30.7 0.1 0.021 14.2 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|389847822|ref|YP_006350061.1| - 5.7e-07 29.6 0.0 0.012 15.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|389847822|ref|YP_006350061.1| - 1.2e-06 27.8 0.1 0.038 13.1 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|389847822|ref|YP_006350061.1| - 1.7e-06 28.1 0.0 0.087 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|389847822|ref|YP_006350061.1| - 2.8e-06 26.7 0.1 0.16 11.1 0.0 3.3 3 0 0 3 3 3 2 PhoH-like protein DUF815 PF05673.8 gi|389847822|ref|YP_006350061.1| - 4.3e-06 25.8 0.0 0.057 12.3 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|389847822|ref|YP_006350061.1| - 4.5e-06 26.5 0.0 0.095 12.3 0.0 3.9 2 2 1 3 3 3 2 Archaeal ATPase AAA_3 PF07726.6 gi|389847822|ref|YP_006350061.1| - 6.5e-06 25.7 0.0 0.088 12.4 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|389847822|ref|YP_006350061.1| - 7e-06 25.0 0.0 0.067 12.0 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain KaiC PF06745.8 gi|389847822|ref|YP_006350061.1| - 8.3e-06 25.0 0.9 0.33 10.0 0.0 3.5 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.22 gi|389847822|ref|YP_006350061.1| - 9.6e-06 25.9 0.0 0.19 12.0 0.0 3.1 3 0 0 3 3 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|389847822|ref|YP_006350061.1| - 1.2e-05 25.4 0.0 0.22 11.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|389847822|ref|YP_006350061.1| - 5.5e-05 22.3 0.1 0.3 10.0 0.0 2.5 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|389847822|ref|YP_006350061.1| - 6.3e-05 22.9 0.0 0.32 10.8 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase NACHT PF05729.7 gi|389847822|ref|YP_006350061.1| - 6.6e-05 22.6 0.1 0.27 10.8 0.0 3.6 4 0 0 4 4 4 1 NACHT domain AAA_24 PF13479.1 gi|389847822|ref|YP_006350061.1| - 9.6e-05 22.0 0.1 0.13 11.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|389847822|ref|YP_006350061.1| - 0.00012 21.7 0.0 0.41 10.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|389847822|ref|YP_006350061.1| - 0.00024 20.0 0.1 0.2 10.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|389847822|ref|YP_006350061.1| - 0.00051 19.6 0.6 1.1 8.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain NTPase_1 PF03266.10 gi|389847822|ref|YP_006350061.1| - 0.00067 19.4 0.3 1.9 8.2 0.0 3.4 2 1 1 3 3 3 1 NTPase ResIII PF04851.10 gi|389847822|ref|YP_006350061.1| - 0.0018 18.1 0.0 2 8.1 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit IPT PF01745.11 gi|389847822|ref|YP_006350061.1| - 0.002 17.3 0.3 0.92 8.6 0.0 2.9 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|389847822|ref|YP_006350061.1| - 0.0022 17.6 0.0 1.5 8.4 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|389847822|ref|YP_006350061.1| - 0.004 16.8 0.0 1.6 8.3 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|389847822|ref|YP_006350061.1| - 0.007 15.8 0.0 1.8 8.0 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain KAP_NTPase PF07693.9 gi|389847822|ref|YP_006350061.1| - 0.007 15.3 0.0 2.4 7.0 0.0 2.6 2 1 0 3 3 3 1 KAP family P-loop domain Cytidylate_kin2 PF13189.1 gi|389847822|ref|YP_006350061.1| - 0.0092 15.9 0.0 2.6 7.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family CPT PF07931.7 gi|389847822|ref|YP_006350061.1| - 0.01 15.4 0.0 1.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein T2SE PF00437.15 gi|389847822|ref|YP_006350061.1| - 0.018 13.9 0.0 2.8 6.7 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Viral_helicase1 PF01443.13 gi|389847822|ref|YP_006350061.1| - 0.02 14.4 0.0 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Torsin PF06309.6 gi|389847822|ref|YP_006350061.1| - 0.024 14.5 0.0 4 7.3 0.0 2.4 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.11 gi|389847822|ref|YP_006350061.1| - 0.041 12.6 0.0 3.1 6.5 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|389847822|ref|YP_006350061.1| - 0.046 12.9 0.1 11 5.1 0.0 2.9 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Vps4_C PF09336.5 gi|389847822|ref|YP_006350061.1| - 0.058 13.2 0.0 0.22 11.4 0.0 2.0 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain Guanylate_kin PF00625.16 gi|389847822|ref|YP_006350061.1| - 0.062 12.7 0.2 36 3.7 0.0 3.6 2 1 1 3 3 3 0 Guanylate kinase PhoU PF01895.14 gi|389847821|ref|YP_006350060.1| - 8.9e-38 128.6 11.1 2e-19 69.8 1.2 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|389847820|ref|YP_006350059.1| - 3.9e-30 104.9 0.0 1.4e-29 103.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|389847820|ref|YP_006350059.1| - 4.8e-14 53.0 0.0 1.2e-11 45.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389847820|ref|YP_006350059.1| - 7.3e-08 31.8 0.2 1.7e-06 27.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|389847820|ref|YP_006350059.1| - 0.00023 20.3 0.0 0.09 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|389847820|ref|YP_006350059.1| - 0.00039 20.5 0.0 0.00097 19.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|389847820|ref|YP_006350059.1| - 0.00085 18.5 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|389847820|ref|YP_006350059.1| - 0.00096 18.6 0.0 0.0025 17.2 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389847820|ref|YP_006350059.1| - 0.002 18.1 1.3 0.025 14.5 0.9 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|389847820|ref|YP_006350059.1| - 0.0024 17.7 0.0 0.0073 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|389847820|ref|YP_006350059.1| - 0.0042 15.8 0.0 0.02 13.5 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_23 PF13476.1 gi|389847820|ref|YP_006350059.1| - 0.0072 16.6 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain DeoRC PF00455.17 gi|389847820|ref|YP_006350059.1| - 0.0072 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|389847820|ref|YP_006350059.1| - 0.009 15.4 0.2 0.1 12.0 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|389847820|ref|YP_006350059.1| - 0.016 14.6 0.3 0.24 10.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|389847820|ref|YP_006350059.1| - 0.027 14.2 0.0 4.5 7.0 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain DUF552 PF04472.7 gi|389847820|ref|YP_006350059.1| - 0.066 13.1 0.2 0.18 11.7 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF552) PRK PF00485.13 gi|389847820|ref|YP_006350059.1| - 0.084 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|389847820|ref|YP_006350059.1| - 0.084 13.6 0.4 0.27 12.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|389847820|ref|YP_006350059.1| - 0.1 12.1 0.0 4 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|389847819|ref|YP_006350058.1| - 5.2e-21 74.9 13.7 5.2e-21 74.9 9.5 4.6 1 1 3 5 5 5 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389847818|ref|YP_006350057.1| - 7.5e-18 64.6 18.9 7.5e-18 64.6 13.1 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|389847817|ref|YP_006350056.1| - 4.8e-32 111.5 1.3 7.3e-32 110.9 0.9 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|389847817|ref|YP_006350056.1| - 1.6e-18 66.3 0.0 3.2e-18 65.3 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|389847817|ref|YP_006350056.1| - 0.13 12.3 1.7 0.35 10.9 1.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.14 gi|389847816|ref|YP_006350055.1| - 1.2e-23 83.3 5.2 5.5e-18 65.1 1.2 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|389847816|ref|YP_006350055.1| - 6.3e-12 44.9 0.0 1.4e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HisKA PF00512.20 gi|389847816|ref|YP_006350055.1| - 3.1 7.8 7.2 0.39 10.7 0.2 3.0 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Ribosomal_S8e PF01201.17 gi|389847815|ref|YP_006350054.1| - 5.1e-33 114.0 3.3 5.6e-33 113.8 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Phage_attach PF05354.6 gi|389847815|ref|YP_006350054.1| - 0.069 12.7 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Phage Head-Tail Attachment DUF2240 PF09999.4 gi|389847814|ref|YP_006350053.1| - 1.8e-49 166.8 0.1 2e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) HAD_2 PF13419.1 gi|389847812|ref|YP_006350051.1| - 1.6e-28 100.1 0.0 1.9e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389847812|ref|YP_006350051.1| - 2.7e-12 47.5 0.1 6.3e-12 46.3 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389847812|ref|YP_006350051.1| - 3.8e-12 45.7 0.0 1.1e-11 44.2 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like 5_nucleotid PF05761.9 gi|389847812|ref|YP_006350051.1| - 0.00061 18.4 0.1 0.45 8.9 0.0 3.0 2 1 1 3 3 3 2 5' nucleotidase family NurA PF09376.5 gi|389847810|ref|YP_006350049.1| - 1.3e-21 77.2 0.0 1.7e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|389847808|ref|YP_006350047.1| - 1.9e-19 70.2 0.2 5.4e-19 68.7 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|389847808|ref|YP_006350047.1| - 2.5e-12 47.1 0.0 5.8e-12 45.9 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|389847808|ref|YP_006350047.1| - 1.9e-07 29.8 0.2 0.00046 18.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|389847808|ref|YP_006350047.1| - 4.1e-06 26.4 0.0 0.0085 15.5 0.0 2.7 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|389847808|ref|YP_006350047.1| - 0.0038 15.9 0.0 0.0078 14.8 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|389847808|ref|YP_006350047.1| - 0.017 14.6 0.0 0.7 9.3 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|389847808|ref|YP_006350047.1| - 0.019 15.1 0.0 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|389847808|ref|YP_006350047.1| - 0.023 14.4 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|389847808|ref|YP_006350047.1| - 0.025 13.4 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|389847808|ref|YP_006350047.1| - 0.034 13.5 0.0 0.085 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|389847808|ref|YP_006350047.1| - 0.13 11.7 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|389847808|ref|YP_006350047.1| - 0.13 11.7 0.0 1.3 8.4 0.0 2.1 1 1 1 2 2 2 0 DEAD/DEAH box helicase Usp PF00582.21 gi|389847807|ref|YP_006350046.1| - 8.3e-28 97.3 1.6 9.7e-28 97.1 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Nitroreductase PF00881.19 gi|389847806|ref|YP_006350045.1| - 1.7e-34 119.0 0.0 3e-34 118.2 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family KaiC PF06745.8 gi|389847805|ref|YP_006350044.1| - 1.1e-53 181.7 0.0 1.3e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|389847805|ref|YP_006350044.1| - 4.1e-10 39.3 0.0 6.4e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|389847805|ref|YP_006350044.1| - 8.2e-06 24.3 0.1 1.6e-05 23.4 0.1 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|389847805|ref|YP_006350044.1| - 0.0014 17.7 0.0 0.0021 17.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|389847805|ref|YP_006350044.1| - 0.0043 15.9 0.0 0.19 10.5 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|389847805|ref|YP_006350044.1| - 0.052 13.1 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|389847805|ref|YP_006350044.1| - 0.11 11.6 0.1 0.19 10.9 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein NAD_kinase PF01513.16 gi|389847804|ref|YP_006350043.1| - 7.1e-41 139.8 0.7 9e-41 139.5 0.5 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|389847804|ref|YP_006350043.1| - 0.0069 15.8 0.2 0.013 14.8 0.1 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain MDMPI_C PF07398.6 gi|389847804|ref|YP_006350043.1| - 5.7 7.5 15.5 0.78 10.3 0.6 3.3 3 1 0 3 3 3 0 MDMPI C-terminal domain NAD_binding_10 PF13460.1 gi|389847803|ref|YP_006350042.1| - 5.1e-33 114.6 4.5 6e-33 114.3 3.2 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|389847803|ref|YP_006350042.1| - 2.7e-14 52.9 0.0 3.7e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|389847803|ref|YP_006350042.1| - 1.5e-09 37.6 0.2 2.1e-09 37.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389847803|ref|YP_006350042.1| - 1.9e-07 30.0 0.1 2.6e-07 29.6 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|389847803|ref|YP_006350042.1| - 0.0067 15.3 0.1 0.59 9.0 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.13 gi|389847803|ref|YP_006350042.1| - 0.011 15.7 1.5 0.013 15.5 0.4 1.6 2 0 0 2 2 2 0 TrkA-N domain DapB_N PF01113.15 gi|389847803|ref|YP_006350042.1| - 0.025 14.4 0.1 0.041 13.7 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|389847803|ref|YP_006350042.1| - 0.043 14.1 0.1 0.069 13.4 0.1 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|389847803|ref|YP_006350042.1| - 0.14 11.7 5.3 0.63 9.6 1.2 2.9 2 1 1 3 3 3 0 KR domain adh_short PF00106.20 gi|389847803|ref|YP_006350042.1| - 1.4 8.8 9.3 6 6.7 5.7 2.4 1 1 1 2 2 2 0 short chain dehydrogenase CPSase_L_D2 PF02786.12 gi|389847802|ref|YP_006350041.1| - 8.1e-97 322.6 0.1 2.3e-58 196.9 0.0 2.8 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|389847802|ref|YP_006350041.1| - 2.2e-44 150.0 0.1 9.2e-22 77.2 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|389847802|ref|YP_006350041.1| - 2.3e-32 112.2 0.0 3.1e-17 62.9 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|389847802|ref|YP_006350041.1| - 4.8e-23 81.2 0.0 1e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|389847802|ref|YP_006350041.1| - 1.9e-19 69.6 0.0 2.5e-10 39.6 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|389847802|ref|YP_006350041.1| - 1.8e-12 47.0 0.0 1.1e-08 34.7 0.0 2.5 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|389847802|ref|YP_006350041.1| - 2.5e-12 46.4 0.0 8e-07 28.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|389847802|ref|YP_006350041.1| - 8e-11 42.0 0.2 5.6e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Peptidase_S66 PF02016.10 gi|389847801|ref|YP_006350040.1| - 3.6e-62 209.8 0.0 4.1e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase Ish1 PF10281.4 gi|389847801|ref|YP_006350040.1| - 0.03 14.3 0.1 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein DUF2065 PF09838.4 gi|389847799|ref|YP_006350038.1| - 0.026 14.1 2.2 0.07 12.8 0.2 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF3040 PF11239.3 gi|389847799|ref|YP_006350038.1| - 0.047 13.7 1.2 0.064 13.3 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2651 PF10852.3 gi|389847799|ref|YP_006350038.1| - 0.23 11.8 4.1 0.29 11.5 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2651) PGPGW PF09656.5 gi|389847799|ref|YP_006350038.1| - 1 8.6 7.5 0.72 9.1 0.3 2.8 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|389847799|ref|YP_006350038.1| - 6.6 6.8 9.4 0.96 9.4 3.5 1.8 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) TM2 PF05154.11 gi|389847798|ref|YP_006350037.1| - 9.5 6.5 11.8 17 5.7 8.2 1.4 1 1 0 1 1 1 0 TM2 domain SCP2_2 PF13530.1 gi|389847797|ref|YP_006350036.1| - 6.1e-56 189.2 6.3 8e-56 188.8 4.4 1.2 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|389847797|ref|YP_006350036.1| - 9.2e-22 77.2 0.2 8.3e-19 67.6 0.0 2.7 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847797|ref|YP_006350036.1| - 2.6e-05 24.2 0.0 0.0015 18.6 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389847797|ref|YP_006350036.1| - 0.0061 16.6 0.2 0.26 11.4 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847797|ref|YP_006350036.1| - 0.028 14.4 0.0 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Tricorn_C1 PF14684.1 gi|389847796|ref|YP_006350035.1| - 0.087 12.7 0.0 0.096 12.5 0.0 1.1 1 0 0 1 1 1 0 Tricorn protease C1 domain FxsA PF04186.8 gi|389847795|ref|YP_006350034.1| - 2.6e-31 107.7 4.3 3.4e-31 107.3 3.0 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.10 gi|662859545|ref|YP_006350033.2| - 3.7e-32 111.2 0.0 6.1e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|662859545|ref|YP_006350033.2| - 7.4e-16 57.9 0.0 2.3e-15 56.3 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.15 gi|662859545|ref|YP_006350033.2| - 1.5e-07 31.0 0.0 2.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|662859545|ref|YP_006350033.2| - 2.1e-07 31.1 0.0 1.1e-06 28.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|662859545|ref|YP_006350033.2| - 0.012 15.0 0.1 0.97 8.7 0.0 2.4 3 0 0 3 3 3 0 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.6 gi|662859545|ref|YP_006350033.2| - 0.042 12.8 0.0 2.6 6.9 0.0 2.3 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_8 PF13905.1 gi|662859545|ref|YP_006350033.2| - 0.056 13.5 0.0 5.2 7.2 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like Glyco_hydro_88 PF07470.8 gi|662859545|ref|YP_006350033.2| - 0.16 11.0 0.3 14 4.5 0.0 3.2 3 1 1 4 4 4 0 Glycosyl Hydrolase Family 88 TrmB PF01978.14 gi|389847793|ref|YP_006350032.1| - 2.1e-20 72.1 0.1 3.6e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|389847793|ref|YP_006350032.1| - 0.0053 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_9 PF08221.6 gi|389847793|ref|YP_006350032.1| - 0.017 14.9 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DASH_Spc34 PF08657.5 gi|389847793|ref|YP_006350032.1| - 0.051 13.2 0.1 0.084 12.5 0.1 1.3 1 0 0 1 1 1 0 DASH complex subunit Spc34 Regulator_TrmB PF11495.3 gi|389847793|ref|YP_006350032.1| - 0.058 12.3 0.0 0.092 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB E2F_TDP PF02319.15 gi|389847793|ref|YP_006350032.1| - 0.071 12.6 0.2 0.2 11.2 0.0 1.8 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain FUSC PF04632.7 gi|389847793|ref|YP_006350032.1| - 0.28 9.5 2.0 0.35 9.2 1.4 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family GCHY-1 PF02649.9 gi|662859544|ref|YP_006350031.2| - 2e-87 292.9 1.6 2.3e-87 292.7 1.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 NifU PF01106.12 gi|389847791|ref|YP_006350030.1| - 1.7e-11 43.7 0.0 2.3e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain DUF2114 PF09887.4 gi|389847791|ref|YP_006350030.1| - 0.0028 16.0 0.1 0.0031 15.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) CHZ PF09649.5 gi|389847791|ref|YP_006350030.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.8 2 0 0 2 2 2 0 Histone chaperone domain CHZ Hydrolase_like PF13242.1 gi|662859543|ref|YP_006350029.2| - 0.064 12.9 0.1 0.23 11.2 0.1 1.8 1 1 1 2 2 2 0 HAD-hyrolase-like Pyr_redox_2 PF07992.9 gi|389847789|ref|YP_006350028.1| - 4.4e-28 98.5 0.1 5.6e-28 98.1 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389847789|ref|YP_006350028.1| - 8.9e-09 35.6 0.1 0.00059 20.1 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389847789|ref|YP_006350028.1| - 4.4e-06 26.9 0.0 0.0047 17.0 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389847789|ref|YP_006350028.1| - 0.00029 19.8 0.2 0.85 8.4 0.0 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|389847789|ref|YP_006350028.1| - 0.0006 19.6 3.9 0.79 9.4 0.0 3.5 4 0 0 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|389847789|ref|YP_006350028.1| - 0.0086 16.0 1.0 0.2 11.7 0.0 3.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|389847789|ref|YP_006350028.1| - 0.017 13.6 0.0 4.7 5.5 0.0 3.2 3 1 1 4 4 4 0 HI0933-like protein Lycopene_cycl PF05834.7 gi|389847789|ref|YP_006350028.1| - 0.022 13.6 0.4 0.21 10.4 0.0 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein HTH_20 PF12840.2 gi|389847788|ref|YP_006350027.1| - 6.9e-08 32.1 0.0 1.3e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ZPR1 PF03367.8 gi|389847788|ref|YP_006350027.1| - 0.11 11.6 0.1 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.7 gi|389847788|ref|YP_006350027.1| - 0.19 11.0 3.5 4.5 6.6 0.1 3.0 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|389847788|ref|YP_006350027.1| - 0.37 10.6 8.3 6.1 6.7 0.7 3.4 3 1 0 3 3 3 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|389847788|ref|YP_006350027.1| - 2 8.3 7.5 0.22 11.3 0.4 2.6 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|389847788|ref|YP_006350027.1| - 4.1 7.7 8.9 9.1 6.6 0.5 3.2 3 1 0 3 3 3 0 Restriction alleviation protein Lar DUF4375 PF14300.1 gi|389847787|ref|YP_006350026.1| - 0.014 15.3 1.1 0.036 14.0 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4375) MatE PF01554.13 gi|389847786|ref|YP_006350025.1| - 2.9e-64 215.5 26.8 1.8e-35 121.9 5.7 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|389847786|ref|YP_006350025.1| - 1.7e-09 37.6 18.3 1.4e-07 31.4 4.9 5.2 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF4225 PF13988.1 gi|389847786|ref|YP_006350025.1| - 0.062 12.7 1.2 0.11 11.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) TetR_N PF00440.18 gi|389847785|ref|YP_006350024.1| - 3.6e-11 42.5 0.2 6.4e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|389847785|ref|YP_006350024.1| - 1.1e-10 41.4 4.2 1.1e-10 41.4 2.9 1.7 2 0 0 2 2 2 1 Bacterial transcriptional repressor Amino_oxidase PF01593.19 gi|389847784|ref|YP_006350023.1| - 3e-26 92.4 1.0 2.6e-22 79.5 0.1 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|389847784|ref|YP_006350023.1| - 1.8e-15 56.7 1.3 5.4e-15 55.1 0.2 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|389847784|ref|YP_006350023.1| - 4e-10 39.1 0.4 5.5e-06 25.5 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389847784|ref|YP_006350023.1| - 4.7e-07 29.8 0.1 0.00017 21.5 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|389847784|ref|YP_006350023.1| - 6.2e-06 25.3 2.8 1.9e-05 23.6 0.7 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|389847784|ref|YP_006350023.1| - 3.8e-05 23.5 0.2 0.057 13.2 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|389847784|ref|YP_006350023.1| - 6.1e-05 22.2 0.2 0.00041 19.5 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|389847784|ref|YP_006350023.1| - 7.4e-05 23.0 1.8 0.00074 19.8 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389847784|ref|YP_006350023.1| - 0.00019 21.5 0.2 0.00065 19.8 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389847784|ref|YP_006350023.1| - 0.00028 19.5 1.1 0.0051 15.3 0.6 2.0 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|389847784|ref|YP_006350023.1| - 0.011 14.7 0.0 0.098 11.5 0.0 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.12 gi|389847784|ref|YP_006350023.1| - 0.013 14.6 0.8 0.051 12.6 0.3 2.0 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|389847784|ref|YP_006350023.1| - 0.018 13.9 0.1 0.018 13.9 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A YjeF_N PF03853.10 gi|389847784|ref|YP_006350023.1| - 0.02 14.4 0.2 0.093 12.3 0.0 1.9 2 0 0 2 2 2 0 YjeF-related protein N-terminus FAD_binding_3 PF01494.14 gi|389847784|ref|YP_006350023.1| - 0.022 13.8 1.1 0.022 13.8 0.7 1.9 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.12 gi|389847784|ref|YP_006350023.1| - 0.51 10.7 1.6 1.6 9.1 0.6 2.2 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|389847784|ref|YP_006350023.1| - 0.77 9.7 2.7 0.48 10.4 0.5 1.6 2 0 0 2 2 2 0 NADH(P)-binding HATPase_c PF02518.21 gi|389847783|ref|YP_006350022.1| - 6.6e-20 70.8 0.0 1.3e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|389847783|ref|YP_006350022.1| - 8.3e-15 54.5 1.0 1.6e-14 53.6 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|389847783|ref|YP_006350022.1| - 7.7e-09 35.5 1.2 1.7e-07 31.2 0.8 2.6 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|389847783|ref|YP_006350022.1| - 1.1e-06 28.3 0.0 4.4e-06 26.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|389847783|ref|YP_006350022.1| - 2.5e-06 27.2 0.0 1.1e-05 25.1 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|389847783|ref|YP_006350022.1| - 0.0011 18.7 0.1 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|389847783|ref|YP_006350022.1| - 0.0024 17.5 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|389847783|ref|YP_006350022.1| - 0.0061 16.9 0.0 0.035 14.4 0.0 2.2 1 1 0 1 1 1 1 PAS domain DUF308 PF03729.8 gi|389847783|ref|YP_006350022.1| - 7.5 6.6 15.2 0.49 10.4 4.0 2.8 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) GHMP_kinases_N PF00288.21 gi|389847782|ref|YP_006350021.1| - 5.4e-17 61.6 1.1 1.3e-16 60.3 0.7 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|389847782|ref|YP_006350021.1| - 2e-06 27.8 0.1 4.2e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Adenylsucc_synt PF00709.16 gi|389847782|ref|YP_006350021.1| - 0.038 12.6 0.2 3.7 6.1 0.0 2.1 1 1 1 2 2 2 0 Adenylosuccinate synthetase Usp PF00582.21 gi|662859542|ref|YP_006350020.2| - 2.4e-16 60.2 1.5 3.1e-16 59.8 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|662859542|ref|YP_006350020.2| - 0.0046 16.6 0.7 0.0092 15.7 0.4 1.5 1 1 1 2 2 2 1 Electron transfer flavoprotein domain SOR_SNZ PF01680.12 gi|389847780|ref|YP_006350019.1| - 1.5e-103 344.8 5.2 1.9e-103 344.4 3.6 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|389847780|ref|YP_006350019.1| - 2.6e-09 36.5 5.2 0.00011 21.4 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|389847780|ref|YP_006350019.1| - 0.0052 15.6 1.3 0.66 8.7 0.1 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|389847780|ref|YP_006350019.1| - 0.021 13.8 0.2 0.25 10.3 0.0 2.2 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|389847780|ref|YP_006350019.1| - 0.046 13.1 0.3 0.093 12.1 0.1 1.7 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF1405 PF07187.6 gi|389847779|ref|YP_006350018.1| - 9.8e-50 168.4 16.0 1.4e-49 167.9 11.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF2839 PF10999.3 gi|389847779|ref|YP_006350018.1| - 2 8.4 4.9 6 6.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) MR_MLE_C PF13378.1 gi|389847778|ref|YP_006350017.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Enolase C-terminal domain-like TAT_signal PF10518.4 gi|389847775|ref|YP_006350014.1| - 3.7 7.7 5.5 0.56 10.3 0.9 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Sulfate_transp PF00916.15 gi|389847773|ref|YP_006350012.1| - 1.8e-10 40.2 14.0 4.5e-09 35.7 6.6 2.6 1 1 1 2 2 2 2 Sulfate transporter family Isochorismatase PF00857.15 gi|389847772|ref|YP_006350011.1| - 1.6e-35 122.6 0.0 3e-35 121.6 0.0 1.5 1 1 0 1 1 1 1 Isochorismatase family YqcI_YcgG PF08892.6 gi|662859541|ref|YP_006350010.2| - 1.1e-75 253.9 0.0 1.3e-75 253.7 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Acetyltransf_1 PF00583.19 gi|389847770|ref|YP_006350009.1| - 3.7e-16 58.9 0.1 7.3e-16 57.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847770|ref|YP_006350009.1| - 3.9e-09 36.6 0.0 5e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847770|ref|YP_006350009.1| - 2.5e-07 30.7 0.0 3.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389847770|ref|YP_006350009.1| - 1.1e-06 28.8 0.0 1.3e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847770|ref|YP_006350009.1| - 3.3e-06 26.7 0.0 5.3e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|389847770|ref|YP_006350009.1| - 6.7e-05 22.7 0.0 0.00015 21.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389847770|ref|YP_006350009.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847770|ref|YP_006350009.1| - 0.0047 16.7 0.0 0.008 16.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|389847770|ref|YP_006350009.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SSF PF00474.12 gi|389847768|ref|YP_006350007.1| - 1.5e-49 168.7 29.0 2e-49 168.3 20.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Tymo_coat PF00983.13 gi|389847768|ref|YP_006350007.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Tymovirus coat protein DUF3311 PF11755.3 gi|389847767|ref|YP_006350006.1| - 1.6e-13 49.9 11.8 1.8e-13 49.8 8.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) AP_endonuc_2 PF01261.19 gi|389847766|ref|YP_006350005.1| - 1.1e-27 96.6 4.4 3.1e-27 95.2 1.7 1.9 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Toprim_4 PF13662.1 gi|389847765|ref|YP_006350004.1| - 3.5e-11 42.9 0.3 9e-11 41.6 0.2 1.7 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|389847765|ref|YP_006350004.1| - 0.013 15.4 0.2 0.063 13.2 0.1 2.2 2 1 0 2 2 2 0 Toprim domain Toprim_2 PF13155.1 gi|389847765|ref|YP_006350004.1| - 0.1 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Acetyltransf_1 PF00583.19 gi|389847764|ref|YP_006350003.1| - 4.8e-07 29.7 0.0 7.6e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847764|ref|YP_006350003.1| - 2.6e-06 27.5 0.0 3.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847764|ref|YP_006350003.1| - 0.0002 21.0 0.0 0.00029 20.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|389847764|ref|YP_006350003.1| - 0.039 14.1 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389847764|ref|YP_006350003.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF92 PF01940.11 gi|662859540|ref|YP_006350002.2| - 8.5e-61 204.9 24.6 8.5e-61 204.9 17.1 2.8 4 0 0 4 4 4 1 Integral membrane protein DUF92 Prenyltransf PF01255.14 gi|389847762|ref|YP_006350001.1| - 1.1e-26 93.3 0.0 2.4e-26 92.2 0.0 1.4 1 1 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Serpin PF00079.15 gi|389847761|ref|YP_006350000.1| - 9.4e-110 367.2 0.0 1.1e-109 366.9 0.0 1.1 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) LPAM_1 PF08139.7 gi|389847761|ref|YP_006350000.1| - 0.5 10.6 2.3 1.2 9.4 1.6 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Prenyltransf PF01255.14 gi|389847760|ref|YP_006349999.1| - 1.7e-69 233.3 0.0 2.2e-69 233.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase NAD_binding_7 PF13241.1 gi|389847757|ref|YP_006349996.1| - 2.7e-22 78.9 0.0 4.8e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|389847757|ref|YP_006349996.1| - 1.1e-05 24.3 0.0 4.3e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central TrkA_N PF02254.13 gi|389847757|ref|YP_006349996.1| - 0.011 15.6 0.2 0.035 14.1 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain PALP PF00291.20 gi|389847757|ref|YP_006349996.1| - 0.17 11.0 2.9 1 8.5 1.9 1.9 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme CysG_dimeriser PF10414.4 gi|389847757|ref|YP_006349996.1| - 0.44 10.0 3.7 0.2 11.1 0.7 1.9 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region GlutR_N PF05201.10 gi|389847756|ref|YP_006349995.1| - 2e-35 121.5 1.2 3.5e-35 120.8 0.1 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|389847756|ref|YP_006349995.1| - 1.5e-31 109.2 0.1 2.8e-31 108.4 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|389847756|ref|YP_006349995.1| - 2.7e-20 72.1 1.3 6.3e-20 70.9 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain ThiF PF00899.16 gi|389847756|ref|YP_006349995.1| - 0.0079 16.0 2.5 0.02 14.7 0.3 2.5 1 1 1 2 2 2 1 ThiF family F420_oxidored PF03807.12 gi|389847756|ref|YP_006349995.1| - 0.0089 16.4 2.6 0.01 16.2 0.3 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|389847756|ref|YP_006349995.1| - 0.019 15.2 0.3 0.051 13.8 0.1 1.8 1 1 1 2 2 2 0 Putative NAD(P)-binding NCKAP5 PF15246.1 gi|389847756|ref|YP_006349995.1| - 0.043 13.2 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein 2-Hacid_dh_C PF02826.14 gi|389847756|ref|YP_006349995.1| - 0.048 12.8 0.0 0.087 11.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2470 PF10615.4 gi|389847756|ref|YP_006349995.1| - 0.066 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2470) Dmrt1 PF12374.3 gi|389847755|ref|YP_006349994.1| - 0.029 14.6 0.2 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 Double-sex mab3 related transcription factor 1 Pterin_4a PF01329.14 gi|389847754|ref|YP_006349993.1| - 7.4e-26 89.7 0.0 7.8e-26 89.6 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|389847754|ref|YP_006349993.1| - 0.024 14.5 0.0 0.078 12.8 0.0 1.7 1 1 1 2 2 2 0 Translation-initiation factor 2 HAD_2 PF13419.1 gi|389847752|ref|YP_006349991.1| - 4.7e-24 85.5 0.3 5.6e-24 85.3 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389847752|ref|YP_006349991.1| - 1.6e-08 34.9 0.3 2.5e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389847752|ref|YP_006349991.1| - 4.5e-05 23.9 0.0 0.0057 17.0 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|389847752|ref|YP_006349991.1| - 0.056 13.1 0.0 5.7 6.5 0.0 2.2 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Hydrolase_like PF13242.1 gi|389847752|ref|YP_006349991.1| - 0.11 12.1 0.1 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like adh_short PF00106.20 gi|389847752|ref|YP_006349991.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Response_reg PF00072.19 gi|662859538|ref|YP_006349990.2| - 3.9e-11 42.9 0.0 9.9e-11 41.6 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|662859538|ref|YP_006349990.2| - 0.0043 17.0 0.0 0.0092 16.0 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MoeA_N PF03453.12 gi|389847750|ref|YP_006349989.1| - 7.2e-49 165.2 1.8 7.2e-49 165.2 1.2 2.0 3 0 0 3 3 3 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|389847750|ref|YP_006349989.1| - 1.6e-27 95.6 0.1 4.3e-27 94.3 0.0 1.7 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|389847750|ref|YP_006349989.1| - 5.3e-27 93.9 0.0 8.8e-27 93.2 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|389847750|ref|YP_006349989.1| - 7.2e-14 51.4 0.1 3.1e-13 49.4 0.1 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|389847750|ref|YP_006349989.1| - 0.0018 17.9 0.0 0.0039 16.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein MoeA_N PF03453.12 gi|389847749|ref|YP_006349988.1| - 4.2e-42 143.2 1.1 1.1e-41 141.8 0.5 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|389847749|ref|YP_006349988.1| - 5.9e-30 103.5 0.1 1.1e-29 102.7 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|389847749|ref|YP_006349988.1| - 3.5e-19 68.5 0.0 1.1e-18 66.9 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) HSP20 PF00011.16 gi|389847748|ref|YP_006349987.1| - 2.7e-09 36.7 0.0 3.6e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ABC1 PF03109.11 gi|389847747|ref|YP_006349986.1| - 1.1e-28 99.6 0.0 2.5e-28 98.4 0.0 1.7 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|389847747|ref|YP_006349986.1| - 0.0011 18.7 0.3 0.011 15.5 0.1 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|389847747|ref|YP_006349986.1| - 0.0013 18.1 0.0 0.015 14.6 0.0 2.5 1 1 0 1 1 1 1 RIO1 family Rhomboid PF01694.17 gi|389847747|ref|YP_006349986.1| - 0.017 15.1 0.1 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Rhomboid family DUF1469 PF07332.6 gi|389847747|ref|YP_006349986.1| - 0.021 14.5 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) eIF-5a PF01287.15 gi|389847745|ref|YP_006349984.1| - 6.5e-06 26.0 0.8 1.7e-05 24.6 0.6 1.7 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|389847745|ref|YP_006349984.1| - 0.0062 16.3 0.0 0.018 14.8 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.16 gi|389847744|ref|YP_006349983.1| - 7.9e-57 192.6 0.7 9.2e-57 192.4 0.5 1.0 1 0 0 1 1 1 1 Arginase family NIF3 PF01784.13 gi|389847743|ref|YP_006349982.1| - 1e-52 179.1 0.0 1.2e-52 178.9 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Usp PF00582.21 gi|389847743|ref|YP_006349982.1| - 0.0068 16.6 0.6 0.23 11.6 0.0 2.2 2 0 0 2 2 2 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|389847743|ref|YP_006349982.1| - 0.014 14.7 0.5 0.12 11.6 0.1 2.5 1 1 1 3 3 3 0 Xylose isomerase-like TIM barrel DAO PF01266.19 gi|389847742|ref|YP_006349981.1| - 3.8e-08 32.6 17.4 0.00036 19.5 0.0 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389847742|ref|YP_006349981.1| - 1.2e-07 31.7 0.6 2.1e-05 24.4 0.0 2.5 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|389847742|ref|YP_006349981.1| - 1.6e-05 25.1 0.2 0.018 15.1 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|389847742|ref|YP_006349981.1| - 5.9e-05 22.1 0.4 0.06 12.2 0.1 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|389847742|ref|YP_006349981.1| - 0.00015 20.3 0.0 0.0049 15.3 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|389847742|ref|YP_006349981.1| - 0.00069 18.7 1.9 0.0023 17.0 0.1 2.5 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|389847742|ref|YP_006349981.1| - 0.0029 16.7 9.0 0.011 14.8 1.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389847742|ref|YP_006349981.1| - 0.006 15.4 0.6 0.006 15.4 0.4 3.5 2 1 2 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.1 gi|389847742|ref|YP_006349981.1| - 0.0061 16.5 1.8 0.0095 15.9 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|389847742|ref|YP_006349981.1| - 0.02 13.7 1.0 0.02 13.7 0.7 2.5 2 1 1 3 3 3 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|389847742|ref|YP_006349981.1| - 0.028 13.5 0.4 0.072 12.1 0.1 1.8 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|389847742|ref|YP_006349981.1| - 0.068 12.9 0.1 0.068 12.9 0.0 3.2 4 1 0 4 4 4 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|389847742|ref|YP_006349981.1| - 0.3 11.5 0.1 0.3 11.5 0.1 2.7 3 1 1 4 4 3 0 Pyridine nucleotide-disulphide oxidoreductase TPR_7 PF13176.1 gi|389847742|ref|YP_006349981.1| - 0.46 10.4 2.7 0.34 10.8 0.3 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Trp_halogenase PF04820.9 gi|389847742|ref|YP_006349981.1| - 9.7 4.6 8.1 3.4 6.1 0.0 2.7 2 1 1 3 3 3 0 Tryptophan halogenase Peripla_BP_2 PF01497.13 gi|389847741|ref|YP_006349980.1| - 3.2e-10 39.5 0.0 4.8e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein DS PF01916.12 gi|389847740|ref|YP_006349979.1| - 2e-75 253.7 0.0 2.5e-75 253.4 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase Glyoxalase_2 PF12681.2 gi|389847738|ref|YP_006349977.1| - 2.5e-11 44.1 0.2 3.2e-11 43.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|389847738|ref|YP_006349977.1| - 2.9e-08 33.7 0.5 4e-08 33.3 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|389847738|ref|YP_006349977.1| - 0.0024 17.8 0.0 0.0036 17.2 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GST_N_2 PF13409.1 gi|389847737|ref|YP_006349976.1| - 1.2e-16 60.4 0.0 2.8e-15 56.0 0.0 2.4 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|389847737|ref|YP_006349976.1| - 2e-13 50.0 0.6 4.3e-13 48.9 0.4 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|389847737|ref|YP_006349976.1| - 2.1e-09 37.2 0.1 3.2e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|389847737|ref|YP_006349976.1| - 3.4e-08 33.8 0.0 7.4e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|389847737|ref|YP_006349976.1| - 0.00058 20.0 0.0 0.021 15.0 0.0 2.9 3 1 0 3 3 3 1 Glutathione S-transferase, N-terminal domain Pyridoxal_deC PF00282.14 gi|389847736|ref|YP_006349975.1| - 9.2e-78 261.2 0.0 1.1e-77 261.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SLA_LP_auto_ag PF05889.8 gi|389847736|ref|YP_006349975.1| - 0.0017 16.8 0.0 0.0029 16.1 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|389847736|ref|YP_006349975.1| - 0.006 15.7 0.0 0.0085 15.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|389847736|ref|YP_006349975.1| - 0.015 14.0 0.1 0.026 13.2 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|389847736|ref|YP_006349975.1| - 0.15 10.9 0.0 0.27 10.1 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II DUF814 PF05670.8 gi|389847736|ref|YP_006349975.1| - 0.19 11.6 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF814) HxlR PF01638.12 gi|389847735|ref|YP_006349974.1| - 6.4e-23 80.1 0.0 8.3e-23 79.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|389847735|ref|YP_006349974.1| - 0.00031 20.3 0.0 0.00049 19.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389847735|ref|YP_006349974.1| - 0.0012 19.0 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|389847735|ref|YP_006349974.1| - 0.0021 18.0 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|389847735|ref|YP_006349974.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|389847735|ref|YP_006349974.1| - 0.022 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein PadR PF03551.9 gi|389847735|ref|YP_006349974.1| - 0.026 14.2 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|389847735|ref|YP_006349974.1| - 0.026 14.1 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PhageMin_Tail PF10145.4 gi|389847734|ref|YP_006349973.1| - 0.0014 18.3 0.8 0.0015 18.2 0.6 1.0 1 0 0 1 1 1 1 Phage-related minor tail protein CMD PF02627.15 gi|389847734|ref|YP_006349973.1| - 0.014 15.1 0.6 0.015 15.0 0.4 1.0 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Phage-MuB_C PF09077.6 gi|389847734|ref|YP_006349973.1| - 0.1 12.2 0.2 0.1 12.2 0.1 1.1 1 0 0 1 1 1 0 Mu B transposition protein, C terminal HTH_IclR PF09339.5 gi|389847733|ref|YP_006349972.1| - 0.0012 18.3 0.4 0.0023 17.4 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847733|ref|YP_006349972.1| - 0.0025 17.4 0.1 0.0065 16.1 0.0 1.6 1 0 0 1 1 1 1 MarR family FAD_binding_4 PF01565.18 gi|389847732|ref|YP_006349971.1| - 1.9e-36 124.5 1.2 3.3e-36 123.8 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|389847732|ref|YP_006349971.1| - 1.1e-09 37.9 0.0 2.3e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|389847732|ref|YP_006349971.1| - 0.092 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Pribosyltran PF00156.22 gi|389847731|ref|YP_006349970.1| - 4.7e-19 68.3 1.1 6.2e-19 67.9 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|389847731|ref|YP_006349970.1| - 0.00061 19.0 0.1 0.00069 18.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|389847731|ref|YP_006349970.1| - 0.015 14.5 0.3 0.022 14.0 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase ASRT PF07100.6 gi|389847731|ref|YP_006349970.1| - 0.075 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer HTH_31 PF13560.1 gi|389847731|ref|YP_006349970.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Xan_ur_permease PF00860.15 gi|389847730|ref|YP_006349969.1| - 3.2e-85 285.9 43.9 4.1e-85 285.6 30.4 1.1 1 0 0 1 1 1 1 Permease family DUF1910 PF08928.5 gi|389847729|ref|YP_006349968.1| - 0.029 14.3 0.9 0.076 13.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1910) Ion_trans_2 PF07885.11 gi|389847728|ref|YP_006349967.1| - 1.5e-17 63.0 8.0 1.8e-17 62.7 3.0 2.4 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|389847728|ref|YP_006349967.1| - 1.6e-12 47.1 10.5 1.6e-12 47.1 7.3 1.6 2 0 0 2 2 2 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|389847728|ref|YP_006349967.1| - 0.0037 16.4 1.2 0.0056 15.8 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|389847728|ref|YP_006349967.1| - 0.012 15.3 0.3 0.018 14.8 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|389847728|ref|YP_006349967.1| - 0.016 14.5 1.0 0.7 9.2 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|389847728|ref|YP_006349967.1| - 0.14 11.6 1.4 0.22 11.0 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain FYVE PF01363.16 gi|389847728|ref|YP_006349967.1| - 0.15 11.9 2.1 0.23 11.3 1.5 1.2 1 0 0 1 1 1 0 FYVE zinc finger OrfB_Zn_ribbon PF07282.6 gi|389847728|ref|YP_006349967.1| - 0.79 9.4 3.5 2.4 7.8 0.8 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain FAA_hydrolase PF01557.13 gi|389847727|ref|YP_006349966.1| - 1.2e-47 162.1 0.0 1.5e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Fer2_BFD PF04324.10 gi|389847727|ref|YP_006349966.1| - 0.072 13.1 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 BFD-like [2Fe-2S] binding domain eIF-5_eIF-2B PF01873.12 gi|389847725|ref|YP_006349964.1| - 1.4e-26 92.6 0.0 2.1e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|389847725|ref|YP_006349964.1| - 2.5e-08 33.6 0.4 4.1e-08 32.8 0.3 1.4 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|389847725|ref|YP_006349964.1| - 0.045 13.6 0.4 0.1 12.5 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|389847725|ref|YP_006349964.1| - 0.72 9.3 3.2 19 4.8 2.8 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Usp PF00582.21 gi|662859537|ref|YP_006349962.2| - 4.1e-31 108.0 0.5 4.5e-31 107.9 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|662859537|ref|YP_006349962.2| - 0.12 12.1 0.1 0.28 10.9 0.1 1.6 1 1 0 1 1 1 0 DNA photolyase SelR PF01641.13 gi|389847722|ref|YP_006349961.1| - 1.1e-50 170.5 0.1 1.2e-50 170.3 0.1 1.0 1 0 0 1 1 1 1 SelR domain DZR PF12773.2 gi|389847722|ref|YP_006349961.1| - 0.01 15.6 0.8 0.06 13.1 0.6 2.2 1 1 0 1 1 1 0 Double zinc ribbon DUF2296 PF10058.4 gi|389847722|ref|YP_006349961.1| - 0.02 14.6 0.1 0.85 9.4 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Yippee-Mis18 PF03226.9 gi|389847722|ref|YP_006349961.1| - 0.056 13.4 0.3 0.14 12.2 0.2 1.6 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly HNH_5 PF14279.1 gi|389847722|ref|YP_006349961.1| - 0.14 12.2 0.2 0.33 10.9 0.1 1.7 2 0 0 2 2 1 0 HNH endonuclease zf-Di19 PF05605.7 gi|389847722|ref|YP_006349961.1| - 0.17 12.0 0.7 0.32 11.1 0.1 1.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding GFA PF04828.9 gi|389847722|ref|YP_006349961.1| - 0.2 11.5 1.6 4 7.4 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.14 gi|389847722|ref|YP_006349961.1| - 0.28 11.0 0.3 0.28 11.0 0.2 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.5 gi|389847722|ref|YP_006349961.1| - 0.34 10.9 2.3 8.9 6.3 0.6 2.4 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|389847722|ref|YP_006349961.1| - 0.52 9.8 3.2 2.5 7.6 0.1 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|389847722|ref|YP_006349961.1| - 2.1 7.9 8.7 0.2 11.1 0.7 2.6 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|389847722|ref|YP_006349961.1| - 8.6 5.7 10.4 4.5 6.6 0.1 3.0 3 1 0 3 3 3 0 TFIIB zinc-binding KaiC PF06745.8 gi|389847720|ref|YP_006349959.1| - 1.9e-43 148.2 0.0 2.1e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|389847720|ref|YP_006349959.1| - 1.2e-08 34.6 0.0 1.7e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|389847720|ref|YP_006349959.1| - 6.6e-07 28.9 0.0 1.7e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain GvpD PF07088.6 gi|389847720|ref|YP_006349959.1| - 2.6e-06 26.0 0.0 9.9e-06 24.1 0.0 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|389847720|ref|YP_006349959.1| - 8.8e-06 25.8 0.1 7.5e-05 22.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389847720|ref|YP_006349959.1| - 9.9e-06 25.2 0.0 1.2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|389847720|ref|YP_006349959.1| - 3e-05 23.9 0.0 5.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|389847720|ref|YP_006349959.1| - 0.00013 21.4 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RecA PF00154.16 gi|389847720|ref|YP_006349959.1| - 0.00042 19.4 0.1 0.0013 17.8 0.0 1.7 2 0 0 2 2 2 1 recA bacterial DNA recombination protein Arch_ATPase PF01637.13 gi|389847720|ref|YP_006349959.1| - 0.00061 19.5 0.0 0.00079 19.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase MEDS PF14417.1 gi|389847720|ref|YP_006349959.1| - 0.0013 17.8 0.0 0.0023 17.0 0.0 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_33 PF13671.1 gi|389847720|ref|YP_006349959.1| - 0.0035 17.2 0.0 0.0047 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|389847720|ref|YP_006349959.1| - 0.0064 15.4 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA PF00004.24 gi|389847720|ref|YP_006349959.1| - 0.0074 16.4 0.1 0.019 15.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|389847720|ref|YP_006349959.1| - 0.0077 15.6 0.0 0.014 14.8 0.0 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|389847720|ref|YP_006349959.1| - 0.0081 16.9 0.0 0.015 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|389847720|ref|YP_006349959.1| - 0.013 15.4 0.0 0.039 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|389847720|ref|YP_006349959.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|389847720|ref|YP_006349959.1| - 0.016 15.2 0.0 0.039 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|389847720|ref|YP_006349959.1| - 0.021 13.9 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|389847720|ref|YP_006349959.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain KTI12 PF08433.5 gi|389847720|ref|YP_006349959.1| - 0.022 13.9 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_35 PF14516.1 gi|389847720|ref|YP_006349959.1| - 0.025 13.2 0.0 0.042 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|389847720|ref|YP_006349959.1| - 0.032 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|389847720|ref|YP_006349959.1| - 0.039 14.2 0.1 0.06 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|389847720|ref|YP_006349959.1| - 0.058 12.2 0.0 0.088 11.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DAP3 PF10236.4 gi|389847720|ref|YP_006349959.1| - 0.063 12.2 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ArgK PF03308.11 gi|389847720|ref|YP_006349959.1| - 0.08 11.7 0.0 0.15 10.8 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Miro PF08477.8 gi|389847720|ref|YP_006349959.1| - 0.091 13.2 0.1 1.9 9.0 0.0 2.2 1 1 1 2 2 2 0 Miro-like protein NTPase_1 PF03266.10 gi|389847720|ref|YP_006349959.1| - 0.1 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.1 gi|389847720|ref|YP_006349959.1| - 0.14 11.6 0.1 0.97 8.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain Aldo_ket_red PF00248.16 gi|389847719|ref|YP_006349958.1| - 1.7e-58 197.7 0.0 1.9e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.14 gi|389847719|ref|YP_006349958.1| - 0.075 12.9 0.5 0.36 10.7 0.0 2.3 2 1 0 2 2 2 0 B12 binding domain HTH_10 PF04967.7 gi|389847719|ref|YP_006349958.1| - 0.11 12.0 0.1 5 6.7 0.0 2.7 3 0 0 3 3 3 0 HTH DNA binding domain HAD_2 PF13419.1 gi|389847718|ref|YP_006349957.1| - 6.5e-13 49.2 0.7 8.2e-13 48.9 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389847718|ref|YP_006349957.1| - 1.6e-11 43.7 0.1 2.9e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|389847718|ref|YP_006349957.1| - 0.00039 20.8 1.5 0.0054 17.1 0.0 2.2 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_31 PF13560.1 gi|389847718|ref|YP_006349957.1| - 0.014 15.5 0.1 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HAD PF12710.2 gi|389847718|ref|YP_006349957.1| - 0.13 12.4 0.6 0.25 11.4 0.4 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|389847718|ref|YP_006349957.1| - 0.16 11.0 0.0 16 4.5 0.0 2.1 2 0 0 2 2 2 0 Putative Phosphatase Amino_oxidase PF01593.19 gi|389847717|ref|YP_006349956.1| - 1.4e-18 67.2 2.7 1.6e-11 43.9 0.3 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|389847717|ref|YP_006349956.1| - 5.9e-16 58.2 0.4 1.7e-15 56.7 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|389847717|ref|YP_006349956.1| - 1.4e-08 34.0 2.4 7.8e-08 31.6 1.2 2.0 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389847717|ref|YP_006349956.1| - 9.9e-06 25.5 0.2 1.9e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|389847717|ref|YP_006349956.1| - 0.00014 21.3 0.2 0.032 13.6 0.1 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|389847717|ref|YP_006349956.1| - 0.0002 20.5 0.2 0.00031 19.9 0.2 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|389847717|ref|YP_006349956.1| - 0.00028 20.1 0.7 0.00037 19.6 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389847717|ref|YP_006349956.1| - 0.00035 19.5 1.2 0.00063 18.6 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|389847717|ref|YP_006349956.1| - 0.00063 19.8 0.3 0.0012 18.9 0.2 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389847717|ref|YP_006349956.1| - 0.00092 17.7 0.3 0.0016 17.0 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|389847717|ref|YP_006349956.1| - 0.0016 18.7 0.4 0.0084 16.4 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|389847717|ref|YP_006349956.1| - 0.014 14.2 4.6 0.017 14.0 0.7 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|389847717|ref|YP_006349956.1| - 0.018 14.6 0.1 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|389847717|ref|YP_006349956.1| - 0.026 13.5 0.1 0.04 12.9 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain TrkA_N PF02254.13 gi|389847717|ref|YP_006349956.1| - 0.039 13.9 0.6 0.33 10.9 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|389847717|ref|YP_006349956.1| - 0.044 13.5 0.6 0.17 11.6 0.4 1.9 1 1 0 1 1 1 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|389847717|ref|YP_006349956.1| - 0.045 12.6 0.9 0.064 12.1 0.2 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|389847717|ref|YP_006349956.1| - 0.055 13.7 0.1 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.7 gi|389847717|ref|YP_006349956.1| - 0.062 12.6 0.1 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|389847717|ref|YP_006349956.1| - 0.18 11.9 0.1 0.45 10.6 0.1 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF3784 PF12650.2 gi|389847716|ref|YP_006349955.1| - 5.4e-05 23.0 0.4 0.0001 22.1 0.3 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3784) Peptidase_M50B PF13398.1 gi|389847716|ref|YP_006349955.1| - 0.022 14.1 0.7 0.024 14.0 0.0 1.4 2 0 0 2 2 2 0 Peptidase M50B-like YtpI PF14007.1 gi|389847716|ref|YP_006349955.1| - 0.86 9.5 4.8 1.4 8.8 0.0 2.4 2 1 0 2 2 2 0 YtpI-like protein DUF1469 PF07332.6 gi|389847716|ref|YP_006349955.1| - 2.9 7.6 6.0 0.88 9.3 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2065 PF09838.4 gi|389847716|ref|YP_006349955.1| - 5 6.9 8.3 1.7 8.4 0.4 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) PHP_C PF13263.1 gi|389847715|ref|YP_006349954.1| - 1e-20 72.9 0.2 4.2e-20 71.0 0.1 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|389847715|ref|YP_006349954.1| - 1.7e-13 50.7 0.1 2.5e-12 46.9 0.0 2.3 1 1 1 2 2 2 1 PHP domain HTH_AsnC-type PF13404.1 gi|389847714|ref|YP_006349953.1| - 5.7e-09 35.3 1.9 0.00036 20.0 0.1 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|389847714|ref|YP_006349953.1| - 0.042 14.1 0.0 1.4 9.3 0.0 3.1 4 0 0 4 4 4 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389847714|ref|YP_006349953.1| - 0.052 13.2 0.0 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|389847714|ref|YP_006349953.1| - 0.1 11.9 0.0 3.4 7.1 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Glycos_transf_3 PF00591.16 gi|389847713|ref|YP_006349952.1| - 7.2e-33 114.0 0.0 1.6e-32 112.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|389847713|ref|YP_006349952.1| - 2.9e-14 52.3 0.6 1.6e-13 50.0 0.2 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF455 PF04305.9 gi|389847713|ref|YP_006349952.1| - 0.0066 15.7 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF455) MS_channel PF00924.13 gi|389847712|ref|YP_006349951.1| - 6.4e-49 166.0 0.1 6.4e-49 166.0 0.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DBI_PRT PF02277.12 gi|389847712|ref|YP_006349951.1| - 0.07 12.2 8.0 0.55 9.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribosyltransferase NeuB PF03102.9 gi|389847712|ref|YP_006349951.1| - 0.1 11.7 0.0 0.37 9.8 0.0 1.8 2 0 0 2 2 2 0 NeuB family AstE_AspA PF04952.9 gi|662859536|ref|YP_006349950.2| - 5.7e-38 130.4 0.1 6.5e-38 130.2 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|662859536|ref|YP_006349950.2| - 0.00036 20.2 0.0 0.052 13.1 0.0 2.4 3 0 0 3 3 3 2 Zinc carboxypeptidase Amidohydro_2 PF04909.9 gi|662859536|ref|YP_006349950.2| - 0.013 15.1 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase SBF PF01758.11 gi|389847710|ref|YP_006349949.1| - 1.1e-42 145.5 13.9 1.1e-42 145.5 9.6 1.5 2 0 0 2 2 2 1 Sodium Bile acid symporter family Mem_trans PF03547.13 gi|389847710|ref|YP_006349949.1| - 0.0011 17.3 7.6 0.0011 17.3 5.3 2.2 2 0 0 2 2 2 1 Membrane transport protein Pro_isomerase PF00160.16 gi|389847709|ref|YP_006349948.1| - 2.7e-49 167.3 0.0 3e-49 167.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer4_15 PF13459.1 gi|389847708|ref|YP_006349947.1| - 0.00026 21.4 0.5 0.00039 20.9 0.3 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|389847708|ref|YP_006349947.1| - 0.049 14.0 0.3 0.086 13.2 0.2 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Phage_holin_6 PF10746.4 gi|662859535|ref|YP_009034588.1| - 0.17 11.6 0.5 0.27 11.0 0.4 1.4 1 0 0 1 1 1 0 Phage holin family 6 MreB_Mbl PF06723.8 gi|662859535|ref|YP_009034588.1| - 1.1 7.7 5.3 1.2 7.6 3.7 1.0 1 0 0 1 1 1 0 MreB/Mbl protein MCPsignal PF00015.16 gi|662859534|ref|YP_006349946.2| - 1.2e-43 149.1 58.4 1.9e-40 138.6 24.8 3.5 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|662859534|ref|YP_006349946.2| - 1.8e-11 44.0 2.9 1.8e-11 44.0 2.0 5.8 6 0 0 6 6 4 1 HAMP domain AAA_13 PF13166.1 gi|662859534|ref|YP_006349946.2| - 8.5e-05 21.2 10.9 0.00025 19.6 0.3 2.1 1 1 1 2 2 2 2 AAA domain BLOC1_2 PF10046.4 gi|662859534|ref|YP_006349946.2| - 0.0043 17.1 11.2 0.5 10.5 0.2 4.4 3 1 1 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|662859534|ref|YP_006349946.2| - 0.019 14.1 24.8 0.25 10.5 4.7 3.7 3 1 1 4 4 4 0 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|662859534|ref|YP_006349946.2| - 0.032 14.0 19.7 0.14 11.9 0.5 4.7 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) ApoO PF09769.4 gi|662859534|ref|YP_006349946.2| - 0.033 13.8 3.4 0.78 9.4 0.2 3.3 3 0 0 3 3 3 0 Apolipoprotein O Laminin_II PF06009.7 gi|662859534|ref|YP_006349946.2| - 0.039 13.7 25.5 0.36 10.5 2.5 4.6 1 1 3 4 4 4 0 Laminin Domain II Spc7 PF08317.6 gi|662859534|ref|YP_006349946.2| - 0.05 12.2 10.6 0.51 8.9 1.2 3.1 2 2 1 3 3 3 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|662859534|ref|YP_006349946.2| - 0.058 13.2 13.8 3.5 7.4 0.1 4.7 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Snapin_Pallidin PF14712.1 gi|662859534|ref|YP_006349946.2| - 0.14 12.4 2.8 3.3 8.0 0.2 3.2 2 2 0 2 2 2 0 Snapin/Pallidin HisK_N PF09385.5 gi|662859534|ref|YP_006349946.2| - 0.24 10.9 1.5 37 3.9 0.0 3.2 1 1 2 3 3 3 0 Histidine kinase N terminal Fib_alpha PF08702.5 gi|662859534|ref|YP_006349946.2| - 0.28 11.2 2.0 4.1 7.5 0.1 2.9 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF16 PF01519.11 gi|662859534|ref|YP_006349946.2| - 0.3 11.3 5.4 27 5.0 0.3 3.6 2 2 0 2 2 2 0 Protein of unknown function DUF16 APG6 PF04111.7 gi|662859534|ref|YP_006349946.2| - 0.4 9.6 11.0 2.2 7.2 0.4 2.5 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF3584 PF12128.3 gi|662859534|ref|YP_006349946.2| - 0.48 7.6 25.5 0.18 9.0 15.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) COG2 PF06148.6 gi|662859534|ref|YP_006349946.2| - 0.68 9.8 15.7 0.68 9.8 0.4 4.7 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3829 PF12889.2 gi|662859534|ref|YP_006349946.2| - 0.69 9.0 6.3 0.79 8.8 1.7 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) IFT57 PF10498.4 gi|662859534|ref|YP_006349946.2| - 1.1 7.9 5.1 4.1 6.0 0.0 3.3 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 NPV_P10 PF05531.7 gi|662859534|ref|YP_006349946.2| - 1.1 9.5 17.7 2.9 8.1 0.3 4.6 4 1 0 4 4 3 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|662859534|ref|YP_006349946.2| - 1.8 8.5 8.9 27 4.7 0.1 4.6 4 1 1 5 5 4 0 Flagella accessory protein C (FlaC) RmuC PF02646.11 gi|662859534|ref|YP_006349946.2| - 2.1 7.1 11.1 3.3 6.4 0.1 4.2 2 2 1 4 4 4 0 RmuC family DUF1664 PF07889.7 gi|662859534|ref|YP_006349946.2| - 4.6 7.0 16.4 11 5.8 0.2 4.6 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|662859534|ref|YP_006349946.2| - 5.2 4.4 8.9 3 5.2 2.6 2.0 1 1 1 2 2 2 0 Prominin AsnC_trans_reg PF01037.16 gi|389847705|ref|YP_006349944.1| - 2e-09 36.9 0.1 2.2e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|389847704|ref|YP_006349943.1| - 4.2e-25 87.9 0.5 6.6e-25 87.3 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|389847704|ref|YP_006349943.1| - 1.1e-09 37.7 0.9 1.6e-08 34.0 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|389847704|ref|YP_006349943.1| - 2.2e-06 27.1 0.2 5.5e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|389847704|ref|YP_006349943.1| - 0.00016 21.8 0.1 0.00035 20.7 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|389847704|ref|YP_006349943.1| - 0.00024 20.1 0.2 0.00034 19.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|389847704|ref|YP_006349943.1| - 0.00029 20.0 0.0 0.00033 19.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|389847704|ref|YP_006349943.1| - 0.00068 19.3 0.2 0.0017 18.0 0.1 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|389847704|ref|YP_006349943.1| - 0.0011 18.9 0.1 0.0046 16.8 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|389847704|ref|YP_006349943.1| - 0.0011 18.6 0.1 0.0021 17.6 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|389847704|ref|YP_006349943.1| - 0.0024 17.3 0.2 0.0045 16.4 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA CPSase_L_chain PF00289.17 gi|389847704|ref|YP_006349943.1| - 0.0039 17.2 0.0 0.01 15.9 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain IlvN PF07991.7 gi|389847704|ref|YP_006349943.1| - 0.0043 16.4 0.0 0.0081 15.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox PF00070.22 gi|389847704|ref|YP_006349943.1| - 0.005 17.2 0.2 0.012 16.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389847704|ref|YP_006349943.1| - 0.011 15.7 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|389847704|ref|YP_006349943.1| - 0.015 15.1 0.1 0.48 10.2 0.0 2.5 1 1 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|389847704|ref|YP_006349943.1| - 0.022 14.6 0.3 0.045 13.6 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.14 gi|389847704|ref|YP_006349943.1| - 0.035 13.2 0.1 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|389847704|ref|YP_006349943.1| - 0.04 12.9 0.2 0.049 12.6 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase FAD_binding_2 PF00890.19 gi|389847704|ref|YP_006349943.1| - 0.042 12.7 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.1 gi|389847704|ref|YP_006349943.1| - 0.051 13.5 0.2 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 NADH(P)-binding XdhC_C PF13478.1 gi|389847704|ref|YP_006349943.1| - 0.055 13.7 0.1 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.16 gi|389847704|ref|YP_006349943.1| - 0.084 12.7 0.2 0.23 11.2 0.0 1.9 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|389847704|ref|YP_006349943.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AsnC_trans_reg PF01037.16 gi|389847703|ref|YP_006349942.1| - 3.7e-09 36.1 0.1 4.1e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 AsnC family E1_dh PF00676.15 gi|389847702|ref|YP_006349941.1| - 1.2e-76 257.3 0.0 1.5e-76 257.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|389847702|ref|YP_006349941.1| - 8e-06 24.8 0.0 1.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|389847702|ref|YP_006349941.1| - 6.7e-05 21.9 0.0 9.9e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|389847702|ref|YP_006349941.1| - 0.0033 16.9 1.8 0.024 14.2 0.3 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPR_12 PF13424.1 gi|389847702|ref|YP_006349941.1| - 0.11 12.4 1.0 2.7 8.0 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat YesK PF14150.1 gi|389847701|ref|YP_006349940.1| - 0.18 11.9 9.7 0.28 11.3 6.8 1.3 1 0 0 1 1 1 0 YesK-like protein ABC2_membrane_2 PF12679.2 gi|389847701|ref|YP_006349940.1| - 0.44 9.3 8.2 0.54 9.0 5.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF788 PF05620.6 gi|389847701|ref|YP_006349940.1| - 0.48 10.2 1.8 0.52 10.1 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF788) ABC2_membrane_4 PF12730.2 gi|389847701|ref|YP_006349940.1| - 0.73 8.9 12.5 0.82 8.7 8.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein YqhR PF11085.3 gi|389847701|ref|YP_006349940.1| - 0.91 9.0 6.9 0.97 8.9 4.8 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR Thymidylate_kin PF02223.12 gi|389847700|ref|YP_006349939.1| - 4.4e-36 123.9 0.0 5.2e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|389847700|ref|YP_006349939.1| - 5.4e-06 26.3 0.0 1.2e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|389847700|ref|YP_006349939.1| - 0.00044 20.5 0.0 0.0013 19.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|389847700|ref|YP_006349939.1| - 0.0024 17.8 0.1 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|389847699|ref|YP_006349938.1| - 0.096 12.1 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NAD_binding_10 PF13460.1 gi|389847698|ref|YP_006349937.1| - 4.7e-32 111.4 0.0 5.6e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|389847698|ref|YP_006349937.1| - 4.8e-23 81.8 0.0 2.6e-22 79.4 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389847698|ref|YP_006349937.1| - 6.8e-15 54.5 0.0 4.1e-13 48.6 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|389847698|ref|YP_006349937.1| - 1.3e-14 53.8 0.0 3.4e-07 29.4 0.0 2.5 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|389847698|ref|YP_006349937.1| - 4.1e-10 39.3 0.0 6.4e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|389847698|ref|YP_006349937.1| - 1.7e-07 30.4 0.0 0.0099 14.8 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|389847698|ref|YP_006349937.1| - 2.8e-05 23.1 0.2 0.00067 18.6 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|389847698|ref|YP_006349937.1| - 0.00011 21.2 0.0 0.00016 20.7 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|389847698|ref|YP_006349937.1| - 0.00012 22.0 0.1 0.00017 21.5 0.0 1.4 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|389847698|ref|YP_006349937.1| - 0.0069 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Glyco_transf_4 PF13439.1 gi|389847698|ref|YP_006349937.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 NAD_binding_2 PF03446.10 gi|389847698|ref|YP_006349937.1| - 0.026 14.3 0.0 0.061 13.1 0.0 1.6 2 0 0 2 2 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.5 gi|389847698|ref|YP_006349937.1| - 0.027 14.1 0.0 0.054 13.1 0.0 1.4 1 1 0 1 1 1 0 KR domain Glyco_trans_4_4 PF13579.1 gi|389847698|ref|YP_006349937.1| - 0.043 13.9 0.1 0.086 12.9 0.1 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DapB_N PF01113.15 gi|389847698|ref|YP_006349937.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|389847698|ref|YP_006349937.1| - 0.051 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|389847698|ref|YP_006349937.1| - 0.077 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DFP PF04127.10 gi|389847698|ref|YP_006349937.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.4 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein ApbA PF02558.11 gi|389847698|ref|YP_006349937.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Tubulin PF00091.20 gi|662859533|ref|YP_006349936.2| - 9.5e-25 87.6 0.0 2.1e-24 86.5 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4398 PF14346.1 gi|389847696|ref|YP_006349935.1| - 7e-06 26.0 5.9 1.4e-05 25.0 4.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) SKG6 PF08693.5 gi|389847696|ref|YP_006349935.1| - 0.023 14.0 0.2 0.051 12.9 0.1 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF3708 PF12501.3 gi|389847696|ref|YP_006349935.1| - 0.17 11.7 0.6 0.33 10.7 0.2 1.8 2 0 0 2 2 2 0 Phosphate ATP-binding cassette transporter CofC PF01983.11 gi|389847695|ref|YP_006349934.1| - 1.4e-37 128.7 0.0 1.6e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|389847695|ref|YP_006349934.1| - 0.0098 15.9 1.7 0.021 14.8 1.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain DAP_epimerase PF01678.14 gi|389847695|ref|YP_006349934.1| - 0.13 12.2 0.3 0.56 10.1 0.2 2.1 1 1 1 2 2 2 0 Diaminopimelate epimerase Radical_SAM PF04055.16 gi|389847694|ref|YP_006349933.1| - 7.5e-18 65.2 0.0 3.2e-17 63.2 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily DUF457 PF04307.9 gi|389847693|ref|YP_006349932.1| - 2.4e-07 30.2 10.4 3.3e-07 29.7 7.2 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Dirigent PF03018.9 gi|389847692|ref|YP_006349931.1| - 0.039 13.4 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Dirigent-like protein DUF457 PF04307.9 gi|389847691|ref|YP_006349930.1| - 2.5e-10 39.9 9.9 3.4e-10 39.4 6.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PRA1 PF03208.14 gi|389847691|ref|YP_006349930.1| - 0.08 12.2 3.8 0.036 13.3 1.0 1.6 1 1 1 2 2 2 0 PRA1 family protein Radical_SAM PF04055.16 gi|389847690|ref|YP_006349929.1| - 1.2e-11 45.0 0.0 2.2e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Gly-zipper_YMGG PF13441.1 gi|389847689|ref|YP_006349928.1| - 0.15 11.5 0.3 0.15 11.5 0.2 3.4 3 1 0 3 3 3 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|389847689|ref|YP_006349928.1| - 3.7 7.2 14.0 0.83 9.3 1.0 3.3 3 1 0 3 3 3 0 Glycine zipper 2TM domain DUF2207 PF09972.4 gi|389847689|ref|YP_006349928.1| - 5.9 5.3 5.3 6.1 5.3 3.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SIR2 PF02146.12 gi|389847688|ref|YP_006349927.1| - 1.6e-46 158.2 0.0 2e-46 157.9 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|389847688|ref|YP_006349927.1| - 0.001 18.7 0.1 0.0079 15.9 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.5 gi|389847688|ref|YP_006349927.1| - 0.67 9.9 2.4 1.7 8.6 1.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain SAICAR_synt PF01259.13 gi|389847687|ref|YP_006349926.1| - 8.3e-16 57.8 0.0 1.7e-15 56.7 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase PQQ_2 PF13360.1 gi|389847686|ref|YP_006349925.1| - 1.6e-34 119.4 9.9 1.8e-19 70.1 1.7 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|389847686|ref|YP_006349925.1| - 3.2e-19 67.4 4.1 0.0097 15.4 0.0 5.9 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|389847686|ref|YP_006349925.1| - 1.1e-17 63.6 27.4 0.0036 17.5 0.0 7.9 8 0 0 8 8 8 7 PQQ-like domain Formyl_trans_N PF00551.14 gi|389847685|ref|YP_006349924.1| - 1e-40 139.1 0.0 1.7e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|389847685|ref|YP_006349924.1| - 1e-07 31.5 0.2 2.5e-07 30.2 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|389847685|ref|YP_006349924.1| - 1.5e-06 27.5 0.3 5.1e-06 25.8 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|389847685|ref|YP_006349924.1| - 0.00075 19.7 0.1 0.0021 18.3 0.1 1.7 1 0 0 1 1 1 1 ACT domain TMV_coat PF00721.16 gi|389847685|ref|YP_006349924.1| - 0.0029 17.5 0.0 0.005 16.7 0.0 1.3 1 0 0 1 1 1 1 Virus coat protein (TMV like) GntP_permease PF02447.11 gi|389847684|ref|YP_006349923.1| - 2.4e-94 316.3 31.4 2.8e-94 316.0 21.7 1.0 1 0 0 1 1 1 1 GntP family permease DUF4124 PF13511.1 gi|389847684|ref|YP_006349923.1| - 0.72 9.9 2.7 2 8.5 1.9 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4124) PurS PF02700.9 gi|662859532|ref|YP_006349922.2| - 1.2e-24 86.0 0.0 1.3e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|662859532|ref|YP_006349922.2| - 0.034 13.4 0.1 0.038 13.2 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GATase_5 PF13507.1 gi|389847682|ref|YP_006349921.1| - 1e-44 152.4 0.0 1.3e-44 152.1 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|389847682|ref|YP_006349921.1| - 5.9e-07 29.1 0.0 7.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|389847682|ref|YP_006349921.1| - 0.0048 16.5 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|389847682|ref|YP_006349921.1| - 0.063 12.7 0.0 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|389847682|ref|YP_006349921.1| - 0.097 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 SH3_3 PF08239.6 gi|389847681|ref|YP_006349920.1| - 0.088 13.0 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Bacterial SH3 domain Radical_SAM PF04055.16 gi|389847680|ref|YP_006349919.1| - 0.00089 19.4 0.5 0.002 18.3 0.3 1.7 1 1 0 1 1 1 1 Radical SAM superfamily AFOR_C PF01314.13 gi|389847678|ref|YP_006349917.1| - 7.4e-123 409.9 0.6 9e-123 409.7 0.4 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|389847678|ref|YP_006349917.1| - 1.6e-76 256.1 0.1 2.4e-76 255.5 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AzlD PF05437.7 gi|389847677|ref|YP_006349916.1| - 7.4e-26 89.9 7.9 8.3e-26 89.8 5.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.9 gi|389847676|ref|YP_006349915.1| - 1.1e-42 145.4 8.7 1.1e-42 145.4 6.0 2.1 2 1 1 3 3 3 1 AzlC protein UPF0231 PF06062.6 gi|389847673|ref|YP_006349912.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0231) ThiS PF02597.15 gi|389847672|ref|YP_006349911.1| - 1.5e-17 63.8 0.1 1.6e-17 63.6 0.1 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|389847672|ref|YP_006349911.1| - 0.00021 21.0 0.0 0.00026 20.7 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I Urm1 PF09138.6 gi|389847672|ref|YP_006349911.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Nup96 PF12110.3 gi|389847671|ref|YP_006349910.1| - 0.012 14.7 0.0 0.014 14.5 0.0 1.1 1 0 0 1 1 1 0 Nuclear protein 96 AAA_23 PF13476.1 gi|389847670|ref|YP_006349909.1| - 1.8e-09 38.2 12.7 1.8e-09 38.2 8.8 4.4 1 1 1 2 2 1 1 AAA domain TPR_MLP1_2 PF07926.7 gi|389847670|ref|YP_006349909.1| - 1.7e-06 27.8 50.2 0.11 12.2 5.3 5.1 1 1 3 4 4 4 2 TPR/MLP1/MLP2-like protein AAA_13 PF13166.1 gi|389847670|ref|YP_006349909.1| - 2.2e-06 26.4 37.3 8.3e-05 21.2 10.0 2.9 2 1 1 3 3 3 2 AAA domain Spc7 PF08317.6 gi|389847670|ref|YP_006349909.1| - 2.4e-06 26.4 55.6 7e-05 21.6 9.6 4.4 2 2 2 4 4 4 3 Spc7 kinetochore protein GAS PF13851.1 gi|389847670|ref|YP_006349909.1| - 0.0001 21.5 50.9 0.031 13.4 15.1 4.6 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding Reo_sigmaC PF04582.7 gi|389847670|ref|YP_006349909.1| - 0.00012 21.4 23.8 0.023 13.8 3.8 4.4 2 1 3 5 5 4 3 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|389847670|ref|YP_006349909.1| - 0.0019 18.0 70.8 0.026 14.3 7.1 4.7 3 2 2 5 5 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.4 gi|389847670|ref|YP_006349909.1| - 0.0025 17.8 4.1 0.0025 17.8 2.8 5.3 2 2 3 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_N PF02465.13 gi|389847670|ref|YP_006349909.1| - 0.0039 17.5 25.8 0.012 15.9 1.2 5.8 2 2 2 5 5 5 1 Flagellar hook-associated protein 2 N-terminus FlaC_arch PF05377.6 gi|389847670|ref|YP_006349909.1| - 0.0041 16.9 37.9 1.7 8.6 0.8 8.2 5 3 3 8 8 8 1 Flagella accessory protein C (FlaC) AAA_27 PF13514.1 gi|389847670|ref|YP_006349909.1| - 0.0059 14.3 57.0 0.0032 15.2 14.1 3.0 2 1 1 3 3 3 2 AAA domain DUF3584 PF12128.3 gi|389847670|ref|YP_006349909.1| - 0.0076 13.6 59.3 0.02 12.2 6.7 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) Erp_C PF06780.6 gi|389847670|ref|YP_006349909.1| - 0.0095 15.7 35.4 0.03 14.1 4.9 4.4 3 2 2 5 5 3 2 Erp protein C-terminus Mnd1 PF03962.10 gi|389847670|ref|YP_006349909.1| - 0.016 14.8 54.6 0.1 12.2 11.1 5.2 2 2 2 4 4 3 0 Mnd1 family Atg14 PF10186.4 gi|389847670|ref|YP_006349909.1| - 0.02 13.8 55.9 0.046 12.6 2.8 4.4 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 WEMBL PF05701.6 gi|389847670|ref|YP_006349909.1| - 0.02 13.3 48.8 0.095 11.1 15.7 2.3 2 0 0 2 2 2 0 Weak chloroplast movement under blue light Myosin_tail_1 PF01576.14 gi|389847670|ref|YP_006349909.1| - 0.026 12.2 67.9 0.25 9.0 18.5 2.5 1 1 0 2 2 2 0 Myosin tail CagE_TrbE_VirB PF03135.9 gi|389847670|ref|YP_006349909.1| - 0.03 14.0 0.4 0.14 11.9 0.3 2.1 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Spectrin PF00435.16 gi|389847670|ref|YP_006349909.1| - 0.039 14.2 43.7 2.5 8.4 2.0 4.9 3 2 1 4 4 4 0 Spectrin repeat IFT57 PF10498.4 gi|389847670|ref|YP_006349909.1| - 0.044 12.5 42.6 0.063 12.0 13.4 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF1664 PF07889.7 gi|389847670|ref|YP_006349909.1| - 0.046 13.5 38.6 0.13 12.0 3.1 5.7 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) IncA PF04156.9 gi|389847670|ref|YP_006349909.1| - 0.046 13.3 85.0 0.4 10.2 15.3 4.6 2 2 2 4 4 4 0 IncA protein Sec34 PF04136.10 gi|389847670|ref|YP_006349909.1| - 0.064 12.9 24.2 0.33 10.6 2.6 4.7 2 2 2 4 4 4 0 Sec34-like family Seryl_tRNA_N PF02403.17 gi|389847670|ref|YP_006349909.1| - 0.078 12.9 47.9 0.3 11.1 1.3 5.5 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.1 gi|389847670|ref|YP_006349909.1| - 0.13 11.6 48.4 0.26 10.7 11.7 4.2 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) DUF4041 PF13250.1 gi|389847670|ref|YP_006349909.1| - 0.15 11.6 0.1 8.8 5.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) TBPIP PF07106.8 gi|389847670|ref|YP_006349909.1| - 0.15 11.5 51.3 0.21 11.1 1.3 5.7 2 2 3 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MAD PF05557.8 gi|389847670|ref|YP_006349909.1| - 0.16 10.0 50.0 0.15 10.0 14.3 2.5 2 0 0 2 2 2 0 Mitotic checkpoint protein FemAB PF02388.11 gi|389847670|ref|YP_006349909.1| - 0.18 10.4 32.8 0.11 11.2 0.4 4.1 3 1 0 4 4 4 0 FemAB family Prefoldin PF02996.12 gi|389847670|ref|YP_006349909.1| - 0.2 11.3 46.4 0.64 9.6 1.3 7.8 3 3 4 8 8 8 0 Prefoldin subunit DUF342 PF03961.8 gi|389847670|ref|YP_006349909.1| - 0.21 9.9 37.7 0.23 9.8 5.8 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF342) Baculo_PEP_C PF04513.7 gi|389847670|ref|YP_006349909.1| - 0.4 10.4 28.8 2.4 7.9 3.3 4.9 2 2 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6 PF04111.7 gi|389847670|ref|YP_006349909.1| - 0.57 9.1 59.1 0.026 13.5 13.3 3.7 2 2 2 4 4 4 0 Autophagy protein Apg6 WXG100 PF06013.7 gi|389847670|ref|YP_006349909.1| - 0.61 10.1 28.0 0.22 11.5 2.9 6.8 2 2 4 7 7 7 0 Proteins of 100 residues with WXG Phage_GP20 PF06810.6 gi|389847670|ref|YP_006349909.1| - 1.4 8.3 51.0 1.4 8.3 1.4 5.7 2 2 4 6 6 6 0 Phage minor structural protein GP20 COG2 PF06148.6 gi|389847670|ref|YP_006349909.1| - 1.5 8.7 43.7 1.9 8.3 0.9 7.0 2 2 6 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 PspA_IM30 PF04012.7 gi|389847670|ref|YP_006349909.1| - 1.5 8.1 55.6 0.73 9.1 12.5 4.6 2 2 2 4 4 4 0 PspA/IM30 family Fzo_mitofusin PF04799.8 gi|389847670|ref|YP_006349909.1| - 1.8 7.9 33.8 1 8.7 3.1 5.5 3 2 3 6 6 6 0 fzo-like conserved region NPV_P10 PF05531.7 gi|389847670|ref|YP_006349909.1| - 2 8.7 32.9 0.32 11.2 1.6 6.0 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Filament PF00038.16 gi|389847670|ref|YP_006349909.1| - 2 7.8 62.9 0.47 9.8 13.8 4.1 1 1 1 3 3 3 0 Intermediate filament protein FlxA PF14282.1 gi|389847670|ref|YP_006349909.1| - 3.7 7.5 50.3 0.082 12.8 3.1 4.9 2 2 2 5 5 5 0 FlxA-like protein DUF4164 PF13747.1 gi|389847670|ref|YP_006349909.1| - 6.3 7.0 68.8 0.027 14.5 9.5 6.7 2 2 3 5 5 4 0 Domain of unknown function (DUF4164) Laminin_II PF06009.7 gi|389847670|ref|YP_006349909.1| - 8 6.2 37.8 1.4 8.6 5.0 4.8 2 2 1 4 4 4 0 Laminin Domain II DivIC PF04977.10 gi|389847670|ref|YP_006349909.1| - 8.9 5.8 61.4 1.7 8.1 3.5 8.7 2 2 7 9 9 9 0 Septum formation initiator CALCOCO1 PF07888.6 gi|389847670|ref|YP_006349909.1| - 9.3 4.4 68.3 29 2.7 8.5 4.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like A1_Propeptide PF07966.7 gi|389847669|ref|YP_006349908.1| - 0.0098 15.6 0.2 0.028 14.1 0.0 1.9 2 0 0 2 2 2 1 A1 Propeptide DSBA PF01323.15 gi|389847669|ref|YP_006349908.1| - 0.12 11.9 0.1 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 DSBA-like thioredoxin domain DUF1616 PF07760.6 gi|662859531|ref|YP_006349907.2| - 3.9e-94 315.0 0.1 4.4e-94 314.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4129 PF13559.1 gi|662859530|ref|YP_006349906.2| - 1.9e-05 24.5 3.5 1.9e-05 24.5 2.4 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) Mycobact_memb PF05423.8 gi|662859530|ref|YP_006349906.2| - 0.023 14.4 0.2 0.094 12.4 0.1 2.0 1 0 0 1 1 1 0 Mycobacterium membrane protein CR6_interact PF10147.4 gi|662859530|ref|YP_006349906.2| - 0.04 13.2 1.6 0.071 12.4 1.1 1.3 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 HEPN PF05168.9 gi|662859530|ref|YP_006349906.2| - 0.12 12.2 2.9 0.27 11.1 0.1 2.7 2 1 0 2 2 2 0 HEPN domain IFT57 PF10498.4 gi|662859530|ref|YP_006349906.2| - 0.55 8.9 3.8 0.88 8.2 2.6 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF58 PF01882.13 gi|389847666|ref|YP_006349905.1| - 1.9e-17 63.1 0.0 7.5e-17 61.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF4345 PF14248.1 gi|389847665|ref|YP_006349904.1| - 0.016 14.6 0.3 0.027 13.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) bZIP_2 PF07716.10 gi|389847665|ref|YP_006349904.1| - 0.032 14.0 0.3 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Basic region leucine zipper AAA_3 PF07726.6 gi|389847664|ref|YP_006349903.1| - 3.2e-62 207.9 0.1 6.4e-62 206.9 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389847664|ref|YP_006349903.1| - 1e-16 60.8 0.0 1.8e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|389847664|ref|YP_006349903.1| - 6.9e-10 38.2 0.0 1.2e-08 34.1 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|389847664|ref|YP_006349903.1| - 1.4e-07 30.9 0.1 0.0053 15.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|389847664|ref|YP_006349903.1| - 6.9e-06 25.6 0.0 7.5e-05 22.2 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|389847664|ref|YP_006349903.1| - 1.3e-05 24.4 0.1 7.5e-05 21.8 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|389847664|ref|YP_006349903.1| - 4.4e-05 23.6 0.0 0.00014 22.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|389847664|ref|YP_006349903.1| - 0.0097 15.6 0.1 0.026 14.2 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|389847664|ref|YP_006349903.1| - 0.011 16.5 0.0 0.021 15.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|389847664|ref|YP_006349903.1| - 0.016 15.1 0.0 0.06 13.3 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|389847664|ref|YP_006349903.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|389847664|ref|YP_006349903.1| - 0.065 13.1 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF4350 PF14258.1 gi|389847663|ref|YP_006349902.1| - 2.3e-08 34.1 0.1 2.3e-08 34.1 0.1 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|389847663|ref|YP_006349902.1| - 0.0078 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.5 gi|389847663|ref|YP_006349902.1| - 0.053 12.6 0.0 5 6.2 0.0 2.2 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain DUF4159 PF13709.1 gi|389847663|ref|YP_006349902.1| - 0.13 11.3 0.0 0.29 10.2 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4159) DAGK_prokar PF01219.14 gi|389847662|ref|YP_006349901.1| - 0.06 12.9 2.4 0.091 12.3 1.7 1.2 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase DUF2474 PF10617.4 gi|389847662|ref|YP_006349901.1| - 0.75 9.4 4.9 0.47 10.0 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) MacB_PCD PF12704.2 gi|389847661|ref|YP_006349900.1| - 1.5e-27 96.6 2.6 2.9e-27 95.7 1.8 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|389847661|ref|YP_006349900.1| - 2.2e-14 53.2 13.1 2.2e-14 53.2 9.1 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF4064 PF13273.1 gi|389847661|ref|YP_006349900.1| - 8.4 6.5 14.6 0.98 9.5 3.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) FtsX PF02687.16 gi|389847660|ref|YP_006349899.1| - 9.3e-14 51.2 15.0 9.4e-12 44.7 8.1 2.2 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|389847660|ref|YP_006349899.1| - 4.1e-06 26.5 2.0 4.1e-06 26.5 1.4 2.6 2 1 1 3 3 3 1 MacB-like periplasmic core domain ABC_tran PF00005.22 gi|389847659|ref|YP_006349898.1| - 9e-35 119.9 0.0 1.2e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847659|ref|YP_006349898.1| - 5.2e-10 39.7 0.0 5.7e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389847659|ref|YP_006349898.1| - 8.3e-09 34.9 0.0 2.5e-05 23.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389847659|ref|YP_006349898.1| - 2.7e-05 23.6 0.2 4.4e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389847659|ref|YP_006349898.1| - 3e-05 24.0 1.6 7e-05 22.8 1.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|389847659|ref|YP_006349898.1| - 4.6e-05 23.3 0.4 0.00021 21.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|389847659|ref|YP_006349898.1| - 6.5e-05 23.2 0.0 0.0046 17.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|389847659|ref|YP_006349898.1| - 0.00024 21.8 0.3 0.00041 21.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|389847659|ref|YP_006349898.1| - 0.00028 21.0 0.2 0.0019 18.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|389847659|ref|YP_006349898.1| - 0.00068 19.6 0.2 0.0039 17.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|389847659|ref|YP_006349898.1| - 0.00086 18.7 0.5 0.0026 17.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|389847659|ref|YP_006349898.1| - 0.0018 17.5 0.0 0.0027 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|389847659|ref|YP_006349898.1| - 0.0019 17.7 0.0 0.0044 16.5 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|389847659|ref|YP_006349898.1| - 0.0034 16.9 1.6 0.096 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|389847659|ref|YP_006349898.1| - 0.0048 16.3 0.0 0.0075 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|389847659|ref|YP_006349898.1| - 0.015 14.7 0.0 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Miro PF08477.8 gi|389847659|ref|YP_006349898.1| - 0.021 15.2 0.0 0.047 14.1 0.0 1.5 2 0 0 2 2 1 0 Miro-like protein AAA_19 PF13245.1 gi|389847659|ref|YP_006349898.1| - 0.022 14.5 1.5 0.047 13.4 0.1 2.3 2 1 0 2 2 2 0 Part of AAA domain PIF1 PF05970.9 gi|389847659|ref|YP_006349898.1| - 0.022 13.6 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase NTPase_1 PF03266.10 gi|389847659|ref|YP_006349898.1| - 0.028 14.1 0.1 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.1 gi|389847659|ref|YP_006349898.1| - 0.031 14.6 0.0 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|389847659|ref|YP_006349898.1| - 0.032 14.2 0.1 0.064 13.2 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|389847659|ref|YP_006349898.1| - 0.033 13.8 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|389847659|ref|YP_006349898.1| - 0.034 13.8 0.0 0.059 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|389847659|ref|YP_006349898.1| - 0.048 13.5 0.1 0.56 10.1 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|389847659|ref|YP_006349898.1| - 0.084 12.0 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|389847659|ref|YP_006349898.1| - 0.13 11.2 0.0 7 5.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF3244 PF11589.3 gi|662859529|ref|YP_006349897.2| - 0.00037 20.1 0.5 0.53 10.0 0.1 3.1 2 1 0 2 2 2 2 Domain of unknown function (DUF3244) DUF601 PF04642.7 gi|662859529|ref|YP_006349897.2| - 0.27 10.5 3.2 0.44 9.8 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF601 Menin PF05053.8 gi|662859529|ref|YP_006349897.2| - 0.34 9.0 6.4 0.49 8.5 4.4 1.2 1 0 0 1 1 1 0 Menin Tim54 PF11711.3 gi|662859529|ref|YP_006349897.2| - 0.5 8.9 2.1 0.81 8.2 1.5 1.2 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 SOG2 PF10428.4 gi|662859529|ref|YP_006349897.2| - 1 7.9 10.2 1.2 7.7 7.1 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein DUF605 PF04652.11 gi|662859529|ref|YP_006349897.2| - 1.9 7.8 13.6 2.4 7.4 9.4 1.2 1 0 0 1 1 1 0 Vta1 like CARDB PF07705.6 gi|662859528|ref|YP_006349896.2| - 1.1e-13 51.1 20.7 3.2e-07 30.3 2.7 14.2 12 3 0 13 13 13 5 CARDB Big_3_3 PF13750.1 gi|662859528|ref|YP_006349896.2| - 2.8e-11 43.0 61.0 0.00023 20.6 4.0 11.3 8 3 2 10 10 10 7 Bacterial Ig-like domain (group 3) Big_3_4 PF13754.1 gi|662859528|ref|YP_006349896.2| - 1.7e-10 41.0 33.5 5.5e-06 26.6 5.6 25.9 22 6 4 26 26 26 9 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.8 gi|662859528|ref|YP_006349896.2| - 5.9e-08 32.3 13.2 0.0064 16.2 0.0 8.9 10 0 0 10 10 10 2 Y_Y_Y domain FlgD_ig PF13860.1 gi|662859528|ref|YP_006349896.2| - 8.2e-07 28.6 2.7 8.2e-07 28.6 1.9 11.3 9 1 0 9 9 9 2 FlgD Ig-like domain Fn3-like PF14310.1 gi|662859528|ref|YP_006349896.2| - 0.0044 16.9 9.5 11 6.0 0.0 6.9 7 0 0 7 7 7 1 Fibronectin type III-like domain Big_5 PF13205.1 gi|662859528|ref|YP_006349896.2| - 0.0079 16.7 16.1 0.0079 16.7 11.2 17.7 11 4 4 17 17 17 2 Bacterial Ig-like domain Transglut_C PF00927.17 gi|662859528|ref|YP_006349896.2| - 0.026 14.5 10.5 0.14 12.1 0.2 5.8 5 0 0 5 5 5 0 Transglutaminase family, C-terminal ig like domain CopC PF04234.7 gi|662859528|ref|YP_006349896.2| - 1.1 9.9 42.9 0.031 14.8 0.8 10.2 10 3 2 12 12 12 0 CopC domain PTA_PTB PF01515.14 gi|389847655|ref|YP_006349894.1| - 1.9e-92 309.7 0.0 2.6e-92 309.3 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|389847655|ref|YP_006349894.1| - 5.1e-67 226.1 0.1 5.1e-67 226.1 0.1 1.5 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|389847655|ref|YP_006349894.1| - 2.6e-28 98.8 0.2 1.4e-25 89.9 0.1 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain BPD_transp_1 PF00528.17 gi|662859526|ref|YP_006349893.2| - 1.2e-16 60.7 14.6 1.2e-16 60.7 10.1 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|389847653|ref|YP_006349892.1| - 1.3e-21 77.2 3.3 1.7e-21 76.9 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein NTP_transf_3 PF12804.2 gi|389847652|ref|YP_006349891.1| - 1.6e-32 112.7 1.8 2e-32 112.4 1.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|389847652|ref|YP_006349891.1| - 0.0073 15.8 0.0 0.0097 15.4 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2064 PF09837.4 gi|389847652|ref|YP_006349891.1| - 0.03 13.9 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Oxidored_molyb PF00174.14 gi|662859525|ref|YP_006349890.2| - 9.2e-18 64.2 0.0 9.7e-18 64.1 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Nitrate_red_del PF02613.10 gi|389847649|ref|YP_006349888.1| - 5.3e-32 110.4 0.0 2.1e-30 105.3 0.0 2.0 1 1 1 2 2 2 2 Nitrate reductase delta subunit NrfD PF03916.9 gi|389847648|ref|YP_006349887.1| - 5.1e-71 239.6 19.8 5.1e-71 239.6 13.7 1.5 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|389847647|ref|YP_006349886.1| - 1.1e-26 92.5 17.1 4e-18 65.1 4.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389847647|ref|YP_006349886.1| - 3.3e-19 69.0 26.4 3.1e-09 37.0 6.7 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|389847647|ref|YP_006349886.1| - 5e-15 55.4 24.7 2.3e-10 40.5 4.5 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389847647|ref|YP_006349886.1| - 8.4e-14 50.7 40.6 1.1e-07 31.4 3.3 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|389847647|ref|YP_006349886.1| - 1.8e-13 49.4 41.3 1.2e-08 34.1 3.0 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|389847647|ref|YP_006349886.1| - 3.1e-13 49.2 53.1 5e-08 32.6 6.1 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389847647|ref|YP_006349886.1| - 7.6e-13 47.5 35.6 8.7e-07 28.5 2.2 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|389847647|ref|YP_006349886.1| - 2e-09 37.3 22.2 0.00016 21.6 4.9 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|389847647|ref|YP_006349886.1| - 3.7e-07 30.2 44.5 0.019 15.4 3.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|389847647|ref|YP_006349886.1| - 2e-06 27.6 37.2 0.00014 21.8 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|389847647|ref|YP_006349886.1| - 1e-05 25.9 20.2 0.003 18.0 0.2 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|389847647|ref|YP_006349886.1| - 1.4e-05 24.8 30.1 0.0011 18.8 0.9 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|389847647|ref|YP_006349886.1| - 2.2e-05 24.6 27.7 0.0021 18.3 4.6 3.9 2 2 3 5 5 5 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|389847647|ref|YP_006349886.1| - 0.0038 17.9 29.9 0.03 15.0 1.7 4.3 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|389847647|ref|YP_006349886.1| - 0.04 14.3 0.9 0.04 14.3 0.6 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|389847647|ref|YP_006349886.1| - 0.085 13.2 25.8 0.15 12.5 1.2 4.3 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|389847647|ref|YP_006349886.1| - 0.66 9.6 23.5 0.85 9.2 3.0 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.17 gi|389847646|ref|YP_006349885.1| - 7.3e-54 183.1 0.0 1.1e-53 182.5 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|389847646|ref|YP_006349885.1| - 9.4e-27 93.0 0.1 2e-26 91.9 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|389847646|ref|YP_006349885.1| - 1.6e-11 43.8 0.6 3.3e-11 42.8 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|389847646|ref|YP_006349885.1| - 0.008 16.0 1.5 0.019 14.9 1.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence zf-C2H2_3 PF13878.1 gi|389847645|ref|YP_006349884.1| - 0.059 12.9 0.1 0.089 12.3 0.1 1.3 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Molybdopterin PF00384.17 gi|389847644|ref|YP_006349883.1| - 2.9e-56 191.0 0.0 7.4e-56 189.7 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|389847644|ref|YP_006349883.1| - 6e-25 87.2 0.0 1.4e-24 85.9 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|389847644|ref|YP_006349883.1| - 2.1e-11 43.4 0.4 5.4e-11 42.1 0.2 1.8 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|389847644|ref|YP_006349883.1| - 0.0082 16.0 1.5 0.019 14.9 1.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4440 PF14534.1 gi|389847644|ref|YP_006349883.1| - 0.058 13.6 0.1 7.4 6.8 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4440) zf-C2H2_3 PF13878.1 gi|389847643|ref|YP_006349882.1| - 0.052 13.1 0.1 0.086 12.4 0.1 1.3 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO HTH_10 PF04967.7 gi|662859524|ref|YP_006349881.2| - 1.1e-17 63.2 0.5 2.3e-17 62.3 0.4 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.22 gi|662859524|ref|YP_006349881.2| - 0.032 13.9 0.7 0.078 12.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.2 gi|662859524|ref|YP_006349881.2| - 0.059 13.0 0.0 0.17 11.5 0.0 1.8 1 0 0 1 1 1 0 MarR family Matrilin_ccoil PF10393.4 gi|662859524|ref|YP_006349881.2| - 0.091 12.1 1.4 7.2 6.0 0.1 3.1 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Abi PF02517.11 gi|389847641|ref|YP_006349880.1| - 1.2e-17 63.8 3.0 1.2e-17 63.8 2.1 2.2 2 1 0 2 2 2 1 CAAX protease self-immunity GPDPase_memb PF10110.4 gi|389847640|ref|YP_006349879.1| - 0.0006 19.2 0.8 0.0006 19.2 0.5 2.0 2 0 0 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF624 PF04854.9 gi|389847640|ref|YP_006349879.1| - 9.9 6.1 10.8 2.7 7.9 4.4 2.6 2 1 0 2 2 2 0 Protein of unknown function, DUF624 Oxidored_q2 PF00420.19 gi|389847639|ref|YP_006349878.1| - 0.086 12.4 0.5 0.086 12.4 0.3 2.1 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PetG PF02529.10 gi|389847639|ref|YP_006349878.1| - 0.13 11.8 0.5 0.13 11.8 0.3 2.3 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 MerC PF03203.9 gi|389847639|ref|YP_006349878.1| - 0.26 11.6 2.2 0.36 11.2 1.0 1.7 1 1 1 2 2 2 0 MerC mercury resistance protein DUF4131 PF13567.1 gi|389847639|ref|YP_006349878.1| - 0.35 10.2 3.0 0.41 10.0 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF202 PF02656.10 gi|389847639|ref|YP_006349878.1| - 0.91 9.7 4.3 3.1 8.0 0.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) HTH_20 PF12840.2 gi|389847638|ref|YP_006349877.1| - 7.1e-07 28.9 0.1 1.2e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389847638|ref|YP_006349877.1| - 7.1e-05 22.1 0.0 0.00011 21.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389847638|ref|YP_006349877.1| - 0.00048 19.6 0.0 0.00073 19.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847638|ref|YP_006349877.1| - 0.0053 16.3 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389847638|ref|YP_006349877.1| - 0.0098 15.5 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|389847638|ref|YP_006349877.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|389847638|ref|YP_006349877.1| - 0.03 14.0 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|389847638|ref|YP_006349877.1| - 0.074 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Focal_AT PF03623.8 gi|389847638|ref|YP_006349877.1| - 0.11 11.9 0.1 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Focal adhesion targeting region DUF975 PF06161.6 gi|389847637|ref|YP_006349876.1| - 0.00082 19.1 7.6 0.0039 16.9 5.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF975) GPDPase_memb PF10110.4 gi|389847637|ref|YP_006349876.1| - 0.0016 17.9 0.0 0.0016 17.9 0.0 2.1 3 0 0 3 3 3 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF21 PF01595.15 gi|389847636|ref|YP_006349875.1| - 2.8e-28 98.4 0.2 3.6e-28 98.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|389847636|ref|YP_006349875.1| - 5.1e-14 51.7 0.4 3.1e-07 30.0 0.0 2.4 2 0 0 2 2 2 2 CBS domain malic PF00390.14 gi|389847636|ref|YP_006349875.1| - 0.093 12.3 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Malic enzyme, N-terminal domain Usp PF00582.21 gi|389847635|ref|YP_006349874.1| - 7.7e-64 214.0 3.6 5.7e-36 123.7 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.5 gi|389847635|ref|YP_006349874.1| - 0.018 14.7 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein GTP-bdg_N PF13167.1 gi|389847635|ref|YP_006349874.1| - 0.018 15.1 0.1 4.6 7.4 0.0 2.2 2 0 0 2 2 2 0 GTP-binding GTPase N-terminal GARS_N PF02844.10 gi|389847635|ref|YP_006349874.1| - 0.082 13.3 0.2 0.54 10.7 0.0 2.1 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Na_Ca_ex PF01699.19 gi|389847634|ref|YP_006349873.1| - 1.6e-41 141.1 26.4 5.4e-21 74.6 3.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|389847634|ref|YP_006349873.1| - 0.065 13.3 0.7 0.24 11.4 0.0 2.3 2 0 0 2 2 2 0 2TM domain PNTB PF02233.11 gi|389847633|ref|YP_006349872.1| - 0.34 9.6 5.9 0.41 9.3 4.1 1.0 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit ThiC PF01964.13 gi|662859523|ref|YP_006349871.2| - 2e-196 652.5 0.0 2.3e-196 652.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|662859523|ref|YP_006349871.2| - 0.079 12.1 0.3 0.16 11.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Binary_toxB PF03495.9 gi|662859523|ref|YP_006349871.2| - 0.14 10.7 0.3 0.36 9.4 0.0 1.7 2 0 0 2 2 2 0 Clostridial binary toxin B/anthrax toxin PA Yip1 PF04893.12 gi|389847631|ref|YP_006349870.1| - 2.3e-12 46.7 21.8 3.1e-12 46.3 15.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|389847631|ref|YP_006349870.1| - 9.5e-08 31.8 13.2 1.2e-07 31.5 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) TPT PF03151.11 gi|389847631|ref|YP_006349870.1| - 0.081 12.5 8.4 0.083 12.5 5.0 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF4407 PF14362.1 gi|389847631|ref|YP_006349870.1| - 4.6 6.1 6.4 7.9 5.3 4.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Cu-oxidase_2 PF07731.9 gi|389847630|ref|YP_006349869.1| - 1.4e-31 108.8 12.2 2.1e-20 72.6 1.0 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|389847630|ref|YP_006349869.1| - 1.5e-21 76.2 7.1 1e-17 63.9 0.9 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|389847630|ref|YP_006349869.1| - 1.5e-12 47.6 0.0 6.1e-12 45.7 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|389847630|ref|YP_006349869.1| - 0.0003 20.6 0.0 0.27 11.1 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|389847630|ref|YP_006349869.1| - 0.092 12.7 1.3 0.19 11.8 0.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.2 gi|389847629|ref|YP_006349868.1| - 6.1e-14 51.5 0.1 2.2e-13 49.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389847629|ref|YP_006349868.1| - 6.3e-09 35.2 0.0 1e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847629|ref|YP_006349868.1| - 1.7e-08 34.0 0.1 3.1e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389847629|ref|YP_006349868.1| - 1e-07 31.5 0.0 1.6e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|389847629|ref|YP_006349868.1| - 9.1e-06 25.4 0.0 1.7e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_5 PF01022.15 gi|389847629|ref|YP_006349868.1| - 1e-05 25.1 0.1 3.2e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|389847629|ref|YP_006349868.1| - 2.8e-05 23.3 0.0 4.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|389847629|ref|YP_006349868.1| - 3.8e-05 23.9 0.0 6.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|389847629|ref|YP_006349868.1| - 0.00035 20.3 0.0 0.00052 19.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|389847629|ref|YP_006349868.1| - 0.00064 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389847629|ref|YP_006349868.1| - 0.00093 18.7 0.0 0.0022 17.5 0.0 1.7 1 1 1 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|389847629|ref|YP_006349868.1| - 0.0017 18.0 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|389847629|ref|YP_006349868.1| - 0.0021 17.6 0.0 0.0034 16.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain UPF0122 PF04297.9 gi|389847629|ref|YP_006349868.1| - 0.0034 17.3 0.0 0.005 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like FUR PF01475.14 gi|389847629|ref|YP_006349868.1| - 0.0065 16.3 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_29 PF13551.1 gi|389847629|ref|YP_006349868.1| - 0.0081 16.2 0.0 0.0099 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|389847629|ref|YP_006349868.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|389847629|ref|YP_006349868.1| - 0.015 15.4 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.1 gi|389847629|ref|YP_006349868.1| - 0.02 14.4 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.11 gi|389847629|ref|YP_006349868.1| - 0.024 13.9 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|389847629|ref|YP_006349868.1| - 0.05 13.6 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|389847629|ref|YP_006349868.1| - 0.055 12.8 0.0 0.084 12.2 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_36 PF13730.1 gi|389847629|ref|YP_006349868.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|389847629|ref|YP_006349868.1| - 0.069 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HARE-HTH PF05066.8 gi|389847629|ref|YP_006349868.1| - 0.074 13.4 0.0 0.59 10.5 0.0 2.2 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain HTH_17 PF12728.2 gi|389847629|ref|YP_006349868.1| - 0.076 13.2 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|389847629|ref|YP_006349868.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF742) DUF1492 PF07374.6 gi|389847629|ref|YP_006349868.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_10 PF04967.7 gi|389847628|ref|YP_006349867.1| - 1.1e-17 63.3 0.0 1.9e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|389847628|ref|YP_006349867.1| - 0.011 15.2 1.6 0.027 14.0 0.1 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|389847628|ref|YP_006349867.1| - 0.05 13.1 0.1 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Copper-bind PF00127.15 gi|389847627|ref|YP_006349866.1| - 2e-32 111.3 3.2 2.4e-16 59.7 0.2 3.8 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389847627|ref|YP_006349866.1| - 6.1e-10 38.9 0.0 6.3e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain Ribosomal_60s PF00428.14 gi|389847627|ref|YP_006349866.1| - 0.014 15.7 1.2 0.014 15.7 0.8 2.0 2 0 0 2 2 2 0 60s Acidic ribosomal protein Jag_N PF14804.1 gi|389847627|ref|YP_006349866.1| - 0.024 14.6 0.1 9.2 6.3 0.0 2.4 2 0 0 2 2 2 0 Jag N-terminus Aurora-A_bind PF09041.5 gi|389847627|ref|YP_006349866.1| - 0.057 13.1 0.1 0.69 9.7 0.0 2.4 2 0 0 2 2 2 0 Aurora-A binding COX1 PF00115.15 gi|389847625|ref|YP_006349864.1| - 3.1e-44 151.3 50.2 3.1e-44 151.3 34.8 1.7 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.3 gi|389847625|ref|YP_006349864.1| - 0.0074 16.4 1.5 0.0074 16.4 1.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) Phage_Coat_Gp8 PF05371.7 gi|389847625|ref|YP_006349864.1| - 0.036 13.6 0.8 0.12 11.9 0.5 1.9 1 0 0 1 1 1 0 Phage major coat protein, Gp8 DUF4307 PF14155.1 gi|389847625|ref|YP_006349864.1| - 0.16 11.7 0.4 21 4.9 0.0 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DDE_Tnp_IS1595 PF12762.2 gi|389847624|ref|YP_006349863.1| - 1.4e-10 41.2 0.0 2.2e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain HTH_38 PF13936.1 gi|389847624|ref|YP_006349863.1| - 0.0027 17.1 0.2 0.0081 15.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|389847624|ref|YP_006349863.1| - 0.027 14.1 1.2 0.073 12.7 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain OrfB_Zn_ribbon PF07282.6 gi|389847624|ref|YP_006349863.1| - 0.064 12.9 1.3 0.17 11.5 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|389847624|ref|YP_006349863.1| - 0.2 10.9 2.7 0.64 9.3 1.8 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|389847624|ref|YP_006349863.1| - 0.3 10.5 2.5 1 8.8 1.8 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Copper-bind PF00127.15 gi|389847623|ref|YP_006349862.1| - 3.4e-15 56.0 0.5 2.4e-14 53.3 0.3 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389847623|ref|YP_006349862.1| - 0.00091 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Myco_19_kDa PF05481.7 gi|389847623|ref|YP_006349862.1| - 0.023 14.5 5.2 0.03 14.1 3.6 1.2 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen DUF4349 PF14257.1 gi|389847623|ref|YP_006349862.1| - 0.45 9.7 2.3 0.57 9.3 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Radical_SAM PF04055.16 gi|389847622|ref|YP_006349861.1| - 2.9e-21 76.3 0.0 4.5e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|389847622|ref|YP_006349861.1| - 1.9e-05 24.8 0.0 3.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|389847622|ref|YP_006349861.1| - 2e-05 24.5 0.0 5e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2249 PF10006.4 gi|389847621|ref|YP_006349860.1| - 2.3e-17 62.3 0.6 2.8e-17 62.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|389847621|ref|YP_006349860.1| - 0.0019 17.8 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Cu-oxidase_3 PF07732.10 gi|389847620|ref|YP_006349859.1| - 4.2e-13 49.0 0.2 1.8e-12 47.0 0.1 2.0 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|389847620|ref|YP_006349859.1| - 1.1e-08 34.7 2.1 1.2e-07 31.2 0.2 3.2 2 2 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.15 gi|389847620|ref|YP_006349859.1| - 9e-07 29.0 1.0 7.2e-06 26.1 0.1 2.5 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|389847620|ref|YP_006349859.1| - 6.8e-06 25.9 0.0 0.00012 21.8 0.0 2.6 3 1 0 3 3 3 1 Cupredoxin-like domain NYD-SP12_N PF15015.1 gi|389847619|ref|YP_006349858.1| - 0.096 10.9 0.0 0.12 10.6 0.0 1.0 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Cupin_2 PF07883.6 gi|389847618|ref|YP_006349857.1| - 5.2e-11 41.8 0.2 6.9e-11 41.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain DUF1637 PF07847.7 gi|389847618|ref|YP_006349857.1| - 4.2e-05 22.9 0.0 4.2e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) Pirin_C PF05726.8 gi|389847618|ref|YP_006349857.1| - 0.0001 22.3 0.0 0.00013 22.0 0.0 1.1 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Pirin PF02678.11 gi|389847618|ref|YP_006349857.1| - 0.023 14.5 0.1 0.026 14.4 0.1 1.2 1 0 0 1 1 1 0 Pirin AraC_binding_2 PF14525.1 gi|389847618|ref|YP_006349857.1| - 0.023 14.2 0.3 0.035 13.6 0.2 1.4 1 1 0 1 1 1 0 AraC-binding-like domain AraC_binding PF02311.14 gi|389847618|ref|YP_006349857.1| - 0.064 12.9 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain COX1 PF00115.15 gi|389847617|ref|YP_006349856.1| - 6.9e-06 24.9 47.7 0.00012 20.8 8.3 4.5 1 1 3 4 4 4 4 Cytochrome C and Quinol oxidase polypeptide I DUF2249 PF10006.4 gi|389847616|ref|YP_006349855.1| - 2.2e-25 88.0 0.3 2.4e-25 87.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) ELFV_dehydrog PF00208.16 gi|389847615|ref|YP_006349854.1| - 3.2e-69 233.2 0.0 4.1e-69 232.8 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|389847615|ref|YP_006349854.1| - 3.2e-52 175.5 0.0 5.4e-52 174.8 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.7 gi|389847615|ref|YP_006349854.1| - 0.00066 17.2 0.1 0.001 16.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|389847615|ref|YP_006349854.1| - 0.002 17.2 0.0 0.0033 16.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|389847615|ref|YP_006349854.1| - 0.0055 16.9 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding zf-C2HC5 PF06221.8 gi|389847614|ref|YP_006349853.1| - 0.0029 17.3 0.4 0.0032 17.1 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.6 gi|389847614|ref|YP_006349853.1| - 0.0053 16.5 1.0 0.0062 16.3 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.2 gi|389847614|ref|YP_006349853.1| - 0.011 15.5 0.7 0.012 15.3 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|389847614|ref|YP_006349853.1| - 0.021 14.2 1.3 0.034 13.6 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|389847614|ref|YP_006349853.1| - 0.064 13.2 1.6 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|389847614|ref|YP_006349853.1| - 0.27 11.2 4.6 1.2 9.0 3.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|389847614|ref|YP_006349853.1| - 0.44 10.9 3.0 3.4 8.1 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|389847614|ref|YP_006349853.1| - 0.59 10.1 4.8 0.99 9.4 2.5 1.8 1 1 1 2 2 2 0 zinc-finger Opy2 PF09463.5 gi|389847614|ref|YP_006349853.1| - 5.2 7.2 7.3 29 4.8 4.7 2.0 1 1 1 2 2 2 0 Opy2 protein GAF_2 PF13185.1 gi|389847613|ref|YP_006349852.1| - 6.6e-24 85.0 3.9 3e-13 50.4 0.1 2.8 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|389847613|ref|YP_006349852.1| - 6.3e-17 60.8 0.0 1.6e-16 59.6 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|389847613|ref|YP_006349852.1| - 1.6e-16 60.5 2.1 5.8e-11 42.5 0.3 2.8 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|389847613|ref|YP_006349852.1| - 3.9e-16 59.2 0.2 4.1e-10 39.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|389847613|ref|YP_006349852.1| - 3.4e-14 52.7 5.9 3e-12 46.5 0.4 3.6 3 1 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|389847613|ref|YP_006349852.1| - 1.4e-13 50.7 0.1 7.2e-13 48.5 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|389847613|ref|YP_006349852.1| - 1.8e-12 47.0 0.1 1.1e-08 34.8 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|389847613|ref|YP_006349852.1| - 2e-08 33.7 0.1 0.0036 17.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|389847613|ref|YP_006349852.1| - 0.0011 18.9 2.7 1 9.3 0.0 3.7 3 1 0 3 3 3 2 PAS fold OKR_DC_1_N PF03709.10 gi|389847613|ref|YP_006349852.1| - 0.0024 17.9 0.5 0.02 14.9 0.0 2.8 2 1 1 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain CS PF04969.11 gi|389847612|ref|YP_006349851.1| - 9.2e-07 29.3 0.2 0.8 10.3 0.0 5.3 4 2 2 6 6 5 1 CS domain FecR PF04773.8 gi|389847612|ref|YP_006349851.1| - 1e-05 25.6 2.6 5.7 7.2 0.0 5.1 2 2 4 6 6 6 2 FecR protein DUF4098 PF13345.1 gi|389847612|ref|YP_006349851.1| - 9.7e-05 22.2 26.2 0.099 12.6 0.6 5.6 1 1 3 5 5 5 3 Domain of unknown function (DUF4098) Glyco_hydro_65C PF03633.10 gi|389847612|ref|YP_006349851.1| - 0.00076 19.5 7.6 0.95 9.5 0.0 6.1 7 1 1 8 8 8 1 Glycosyl hydrolase family 65, C-terminal domain DUF2807 PF10988.3 gi|389847612|ref|YP_006349851.1| - 0.0044 16.5 9.1 2.2 7.7 4.6 3.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2807) DUF4097 PF13349.1 gi|389847612|ref|YP_006349851.1| - 0.0052 16.3 6.5 4 6.9 1.5 4.3 1 1 2 3 3 3 1 Domain of unknown function (DUF4097) HtaA PF04213.8 gi|389847612|ref|YP_006349851.1| - 0.0073 16.5 13.6 0.36 11.0 0.3 4.3 1 1 3 4 4 4 2 Htaa DUF945 PF06097.6 gi|389847612|ref|YP_006349851.1| - 0.014 14.1 11.5 1 8.0 0.8 3.0 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF945) NAGLU_N PF12971.2 gi|389847612|ref|YP_006349851.1| - 0.034 13.8 5.2 5.2 6.8 0.0 4.3 3 2 2 6 6 6 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain DUF4140 PF13600.1 gi|389847612|ref|YP_006349851.1| - 0.069 13.5 0.1 0.32 11.4 0.1 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Dicty_CAD PF05720.7 gi|389847612|ref|YP_006349851.1| - 4 7.1 30.8 4.3 7.0 0.1 6.5 3 3 3 6 6 6 0 Cell-cell adhesion domain MarR PF01047.17 gi|389847611|ref|YP_006349850.1| - 2.1e-07 30.5 0.1 3.9e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|389847611|ref|YP_006349850.1| - 2e-05 24.2 0.0 3.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389847611|ref|YP_006349850.1| - 5.9e-05 22.6 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|389847611|ref|YP_006349850.1| - 0.00092 19.4 0.1 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389847611|ref|YP_006349850.1| - 0.0013 18.4 0.0 0.0039 16.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|389847611|ref|YP_006349850.1| - 0.0055 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|389847611|ref|YP_006349850.1| - 0.0079 15.5 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.10 gi|389847611|ref|YP_006349850.1| - 0.0093 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|389847611|ref|YP_006349850.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|389847611|ref|YP_006349850.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|389847611|ref|YP_006349850.1| - 0.017 15.1 0.0 0.093 12.7 0.1 2.0 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein GntR PF00392.16 gi|389847611|ref|YP_006349850.1| - 0.017 14.5 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Crp PF00325.15 gi|389847611|ref|YP_006349850.1| - 0.041 13.3 0.0 0.12 11.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family TFIIE_alpha PF02002.12 gi|389847611|ref|YP_006349850.1| - 0.12 11.8 0.0 0.38 10.2 0.0 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit RP-C PF03428.8 gi|389847611|ref|YP_006349850.1| - 0.13 11.7 0.1 0.4 10.1 0.0 1.8 2 0 0 2 2 2 0 Replication protein C N-terminal domain Peripla_BP_2 PF01497.13 gi|389847610|ref|YP_006349849.1| - 1.3e-08 34.2 0.0 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein DUF4098 PF13345.1 gi|389847608|ref|YP_006349847.1| - 3.9e-08 33.1 26.7 0.087 12.7 0.2 5.7 2 1 3 5 5 5 4 Domain of unknown function (DUF4098) FecR PF04773.8 gi|389847608|ref|YP_006349847.1| - 1.3e-07 31.7 1.1 0.23 11.7 0.1 4.7 1 1 3 5 5 5 2 FecR protein CS PF04969.11 gi|389847608|ref|YP_006349847.1| - 6.7e-07 29.7 0.4 1.6 9.2 0.0 5.2 4 2 1 5 5 5 1 CS domain Glyco_hydro_65C PF03633.10 gi|389847608|ref|YP_006349847.1| - 6.1e-06 26.2 8.5 1.5 8.9 0.0 7.2 5 2 3 8 8 8 1 Glycosyl hydrolase family 65, C-terminal domain TIG PF01833.19 gi|389847608|ref|YP_006349847.1| - 0.00034 20.5 0.0 0.19 11.7 0.0 2.6 2 0 0 2 2 2 1 IPT/TIG domain DUF2345 PF10106.4 gi|389847608|ref|YP_006349847.1| - 0.00034 20.2 0.0 3.2 7.3 0.0 3.6 2 1 2 4 4 4 2 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.8 gi|389847608|ref|YP_006349847.1| - 0.0017 17.6 0.1 2.3 7.3 0.0 3.1 1 1 0 3 3 3 1 Sarcoglycan complex subunit protein HtaA PF04213.8 gi|389847608|ref|YP_006349847.1| - 0.0017 18.6 11.2 3.4 7.8 0.0 4.3 1 1 2 3 3 3 3 Htaa DUF4097 PF13349.1 gi|389847608|ref|YP_006349847.1| - 0.0021 17.6 5.2 0.28 10.7 2.1 4.0 1 1 3 4 4 4 3 Domain of unknown function (DUF4097) DUF945 PF06097.6 gi|389847608|ref|YP_006349847.1| - 0.0023 16.7 8.1 0.29 9.8 0.3 2.9 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF945) LEA_2 PF03168.8 gi|389847608|ref|YP_006349847.1| - 0.055 13.8 0.0 48 4.4 0.0 4.4 1 1 2 3 3 3 0 Late embryogenesis abundant protein DUF2807 PF10988.3 gi|389847608|ref|YP_006349847.1| - 0.13 11.8 10.4 2.4 7.6 5.1 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2807) YabP PF07873.6 gi|389847608|ref|YP_006349847.1| - 0.21 11.1 4.4 11 5.7 0.2 4.1 4 2 1 5 5 5 0 YabP family DUF2382 PF09557.5 gi|389847608|ref|YP_006349847.1| - 1.8 8.4 5.1 2.2 8.1 0.1 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF2382) HSP20 PF00011.16 gi|389847608|ref|YP_006349847.1| - 2.8 7.8 21.0 4.4 7.2 1.2 6.0 2 1 2 5 5 5 0 Hsp20/alpha crystallin family NAGLU_N PF12971.2 gi|389847608|ref|YP_006349847.1| - 3.3 7.4 8.4 17 5.1 0.0 4.6 2 2 3 6 6 6 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Methyltransf_FA PF12248.3 gi|389847608|ref|YP_006349847.1| - 3.7 7.6 5.4 39 4.3 0.0 4.5 4 2 0 4 4 4 0 Farnesoic acid 0-methyl transferase Dicty_CAD PF05720.7 gi|389847608|ref|YP_006349847.1| - 9.2 5.9 31.6 4.4 7.0 0.1 6.7 3 3 4 7 7 7 0 Cell-cell adhesion domain LLGL PF08366.8 gi|389847607|ref|YP_006349846.1| - 0.053 13.4 6.1 0.067 13.0 4.2 1.3 1 0 0 1 1 1 0 LLGL2 Nitroreductase PF00881.19 gi|389847606|ref|YP_006349845.1| - 4.6e-34 117.6 0.0 5.5e-34 117.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DNA_topoisoIV PF00521.15 gi|389847606|ref|YP_006349845.1| - 0.073 11.9 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A MCPsignal PF00015.16 gi|389847605|ref|YP_006349844.1| - 4e-49 167.0 52.8 4.7e-46 157.0 24.0 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|389847605|ref|YP_006349844.1| - 6.3e-43 147.5 5.2 6.3e-43 147.5 3.6 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|389847605|ref|YP_006349844.1| - 6.1e-28 98.4 4.9 8.9e-28 97.9 3.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1131 PF06572.7 gi|389847605|ref|YP_006349844.1| - 0.01 15.3 0.5 0.032 13.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1131) DUF948 PF06103.6 gi|389847605|ref|YP_006349844.1| - 0.029 14.2 23.4 0.068 13.0 1.6 4.5 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF948) SBP_bac_6 PF13343.1 gi|389847605|ref|YP_006349844.1| - 0.031 13.6 0.0 1.2 8.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein AKNA PF12443.3 gi|389847605|ref|YP_006349844.1| - 0.035 14.1 8.0 0.12 12.3 0.5 3.6 3 1 0 3 3 3 0 AT-hook-containing transcription factor DUF2935 PF11155.3 gi|389847605|ref|YP_006349844.1| - 0.048 13.7 4.2 13 5.8 0.0 3.7 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) Laminin_II PF06009.7 gi|389847605|ref|YP_006349844.1| - 0.12 12.0 34.1 0.038 13.7 3.1 4.6 2 2 2 4 4 4 0 Laminin Domain II CK2S PF15011.1 gi|389847605|ref|YP_006349844.1| - 0.23 11.2 9.6 0.54 10.0 0.2 4.4 1 1 3 4 4 4 0 Casein Kinase 2 substrate Spc7 PF08317.6 gi|389847605|ref|YP_006349844.1| - 0.41 9.2 24.8 0.14 10.7 2.8 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF489 PF04356.7 gi|389847605|ref|YP_006349844.1| - 1.4 8.4 8.7 0.21 11.1 1.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Laminin_I PF06008.9 gi|389847605|ref|YP_006349844.1| - 1.6 8.0 32.1 0.016 14.5 3.6 4.2 1 1 2 4 4 4 0 Laminin Domain I ISG65-75 PF11727.3 gi|389847605|ref|YP_006349844.1| - 2.9 6.8 25.7 0.11 11.4 3.4 3.1 1 1 2 3 3 3 0 Invariant surface glycoprotein Filament PF00038.16 gi|389847605|ref|YP_006349844.1| - 3.9 6.8 25.7 6.3 6.1 13.2 2.9 1 1 1 2 2 2 0 Intermediate filament protein Phage_GP20 PF06810.6 gi|389847605|ref|YP_006349844.1| - 8.8 5.7 17.4 0.95 8.8 0.4 3.7 2 2 1 3 3 3 0 Phage minor structural protein GP20 Hemerythrin PF01814.18 gi|389847605|ref|YP_006349844.1| - 9 6.4 8.3 2.9 8.0 1.0 3.6 2 2 2 4 4 4 0 Hemerythrin HHE cation binding domain TBP PF00352.16 gi|389847604|ref|YP_006349843.1| - 1.8e-61 203.5 0.0 4.5e-30 102.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|389847604|ref|YP_006349843.1| - 0.00071 19.5 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) ADH_zinc_N PF00107.21 gi|389847603|ref|YP_006349842.1| - 9.1e-19 67.2 0.1 1.4e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|389847603|ref|YP_006349842.1| - 1.7e-09 38.6 0.1 3.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DapB_N PF01113.15 gi|389847603|ref|YP_006349842.1| - 0.11 12.4 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF543 PF04418.7 gi|389847602|ref|YP_006349841.1| - 0.2 11.6 0.9 0.33 10.9 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF543) Aminotran_3 PF00202.16 gi|389847601|ref|YP_006349840.1| - 2.7e-74 250.0 0.0 9.2e-74 248.3 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|389847601|ref|YP_006349840.1| - 0.0048 16.0 0.0 0.0065 15.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase IclR PF01614.13 gi|389847600|ref|YP_006349839.1| - 9.1e-36 122.4 0.0 1.7e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|389847600|ref|YP_006349839.1| - 1.3e-08 34.3 0.0 3e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|389847600|ref|YP_006349839.1| - 2.6e-08 33.1 0.0 4.9e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|389847600|ref|YP_006349839.1| - 1.5e-06 27.7 0.0 8.2e-06 25.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|389847600|ref|YP_006349839.1| - 6.1e-06 25.8 0.0 3.9e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|389847600|ref|YP_006349839.1| - 0.00038 20.1 0.0 0.0012 18.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|389847600|ref|YP_006349839.1| - 0.00044 19.8 0.0 0.0024 17.5 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|389847600|ref|YP_006349839.1| - 0.00092 18.8 0.0 0.0029 17.2 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|389847600|ref|YP_006349839.1| - 0.0018 18.2 0.0 0.14 12.2 0.0 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|389847600|ref|YP_006349839.1| - 0.0032 16.9 0.1 0.026 14.0 0.0 2.5 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|389847600|ref|YP_006349839.1| - 0.0032 17.7 0.0 0.016 15.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|389847600|ref|YP_006349839.1| - 0.0061 16.3 0.0 0.021 14.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_36 PF13730.1 gi|389847600|ref|YP_006349839.1| - 0.0097 16.0 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|389847600|ref|YP_006349839.1| - 0.011 15.3 0.0 0.028 14.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|389847600|ref|YP_006349839.1| - 0.025 14.2 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator PadR PF03551.9 gi|389847600|ref|YP_006349839.1| - 0.027 14.2 0.1 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|389847600|ref|YP_006349839.1| - 0.065 12.9 0.0 0.25 11.0 0.0 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Na_H_antiporter PF03553.9 gi|389847599|ref|YP_006349838.1| - 3.4e-55 187.2 44.8 7.7e-53 179.4 16.8 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family HTH_10 PF04967.7 gi|389847598|ref|YP_006349837.1| - 6.6e-21 73.6 0.1 1.2e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|389847598|ref|YP_006349837.1| - 0.001 18.4 0.6 0.028 13.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389847598|ref|YP_006349837.1| - 0.0072 15.6 0.1 0.015 14.5 0.1 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 TetR_N PF00440.18 gi|389847598|ref|YP_006349837.1| - 0.014 14.9 0.1 0.061 12.9 0.0 2.0 2 1 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|389847598|ref|YP_006349837.1| - 0.02 14.2 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_psq PF05225.11 gi|389847598|ref|YP_006349837.1| - 0.022 14.3 0.1 0.59 9.7 0.0 2.3 2 0 0 2 2 2 0 helix-turn-helix, Psq domain LexA_DNA_bind PF01726.11 gi|389847598|ref|YP_006349837.1| - 0.079 12.5 0.1 0.54 9.8 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain GerE PF00196.14 gi|389847598|ref|YP_006349837.1| - 0.098 11.9 0.2 1.3 8.4 0.2 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Usp PF00582.21 gi|389847597|ref|YP_006349836.1| - 7.4e-29 100.7 1.9 8.3e-29 100.5 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF4010 PF13194.1 gi|389847596|ref|YP_006349835.1| - 1.8e-52 177.7 19.3 1.8e-52 177.7 13.4 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|389847596|ref|YP_006349835.1| - 3.9e-13 49.4 3.7 3.9e-13 49.4 2.6 3.8 3 1 0 3 3 3 1 MgtC family Phosphonate-bd PF12974.2 gi|389847595|ref|YP_006349834.1| - 2.3e-57 194.2 0.1 3.2e-57 193.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|389847595|ref|YP_006349834.1| - 0.0003 20.0 0.0 0.0029 16.8 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|389847595|ref|YP_006349834.1| - 0.0006 19.4 0.0 0.0013 18.3 0.0 1.5 2 0 0 2 2 2 1 NMT1/THI5 like SBP_bac_11 PF13531.1 gi|389847595|ref|YP_006349834.1| - 0.0033 17.0 0.1 0.01 15.5 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein NMT1_2 PF13379.1 gi|389847595|ref|YP_006349834.1| - 0.013 14.8 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family OpuAC PF04069.7 gi|389847595|ref|YP_006349834.1| - 0.088 12.1 0.0 0.4 9.9 0.0 1.9 1 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system ABC_tran PF00005.22 gi|389847594|ref|YP_006349833.1| - 2e-36 125.3 0.0 2.9e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847594|ref|YP_006349833.1| - 6.4e-12 46.0 0.0 1.1e-08 35.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389847594|ref|YP_006349833.1| - 2.8e-05 23.7 0.0 0.09 12.1 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|389847594|ref|YP_006349833.1| - 5.1e-05 23.4 0.1 0.011 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|389847594|ref|YP_006349833.1| - 0.00012 22.0 0.3 0.00033 20.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|389847594|ref|YP_006349833.1| - 0.00022 20.6 0.0 0.00042 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|389847594|ref|YP_006349833.1| - 0.00036 20.4 0.0 0.0017 18.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|389847594|ref|YP_006349833.1| - 0.00045 19.4 0.0 0.00066 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|389847594|ref|YP_006349833.1| - 0.00058 19.0 0.2 0.096 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|389847594|ref|YP_006349833.1| - 0.0015 17.7 0.1 0.98 8.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|389847594|ref|YP_006349833.1| - 0.0025 17.7 0.2 0.032 14.1 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|389847594|ref|YP_006349833.1| - 0.0025 18.1 0.1 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|389847594|ref|YP_006349833.1| - 0.003 16.7 0.0 0.0043 16.2 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|389847594|ref|YP_006349833.1| - 0.0042 16.6 0.1 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|389847594|ref|YP_006349833.1| - 0.0061 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain ABC_ATPase PF09818.4 gi|389847594|ref|YP_006349833.1| - 0.0076 14.8 0.0 4.1 5.8 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|389847594|ref|YP_006349833.1| - 0.011 14.5 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|389847594|ref|YP_006349833.1| - 0.013 15.1 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|389847594|ref|YP_006349833.1| - 0.014 15.6 1.8 0.34 11.2 1.3 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|389847594|ref|YP_006349833.1| - 0.02 14.8 0.0 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|389847594|ref|YP_006349833.1| - 0.044 13.4 0.0 0.05 13.2 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|389847594|ref|YP_006349833.1| - 0.076 13.8 4.6 0.38 11.5 3.2 2.4 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|389847594|ref|YP_006349833.1| - 0.08 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein XylR_N PF06505.6 gi|389847594|ref|YP_006349833.1| - 0.096 12.1 1.2 5.6 6.4 0.0 3.1 3 0 0 3 3 3 0 Activator of aromatic catabolism Rad17 PF03215.10 gi|389847594|ref|YP_006349833.1| - 0.11 11.1 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein BPD_transp_1 PF00528.17 gi|389847593|ref|YP_006349832.1| - 8.8e-15 54.6 8.4 8.8e-15 54.6 5.8 2.3 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389847592|ref|YP_006349831.1| - 3.2e-15 56.1 16.0 3.2e-15 56.1 11.1 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Macoilin PF09726.4 gi|389847591|ref|YP_006349830.1| - 1.9 6.6 14.2 2.6 6.2 9.8 1.3 1 0 0 1 1 1 0 Transmembrane protein PAS_9 PF13426.1 gi|389847590|ref|YP_006349829.1| - 3.1e-20 72.4 0.3 1.6e-19 70.2 0.1 2.3 3 0 0 3 3 3 1 PAS domain HATPase_c PF02518.21 gi|389847590|ref|YP_006349829.1| - 5.2e-18 64.7 0.0 1.2e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|389847590|ref|YP_006349829.1| - 8.6e-17 60.9 0.1 2.3e-16 59.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|389847590|ref|YP_006349829.1| - 6.8e-11 42.1 0.1 7.4e-10 38.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|389847590|ref|YP_006349829.1| - 1e-10 41.4 0.5 3.3e-10 39.8 0.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|389847590|ref|YP_006349829.1| - 1.2e-09 38.8 0.1 7.6e-09 36.2 0.1 2.3 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|389847590|ref|YP_006349829.1| - 2.1e-08 34.3 0.0 7.7e-08 32.5 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|389847590|ref|YP_006349829.1| - 4.7e-08 33.0 0.1 1.4e-07 31.4 0.1 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|389847590|ref|YP_006349829.1| - 1.5e-06 28.4 0.1 4.8e-06 26.7 0.1 2.0 2 1 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|389847590|ref|YP_006349829.1| - 6.1e-05 22.7 0.1 0.00098 18.9 0.0 2.8 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|389847590|ref|YP_006349829.1| - 0.0021 17.7 0.0 0.0051 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arylsulfotrans PF05935.6 gi|389847589|ref|YP_006349828.1| - 4.7e-11 41.8 3.0 1.5e-10 40.1 0.8 2.2 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|389847589|ref|YP_006349828.1| - 6.1e-11 42.0 0.5 6e-10 38.7 0.4 2.4 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.1 gi|389847589|ref|YP_006349828.1| - 0.00031 20.2 1.6 0.0041 16.6 0.1 2.4 2 1 0 2 2 2 1 PQQ-like domain PQQ PF01011.16 gi|389847589|ref|YP_006349828.1| - 0.019 14.4 0.1 5.2 6.7 0.0 3.3 3 0 0 3 3 3 0 PQQ enzyme repeat NHL PF01436.16 gi|389847589|ref|YP_006349828.1| - 0.077 12.9 4.5 5.2 7.2 0.1 3.6 4 0 0 4 4 4 0 NHL repeat AMP-binding PF00501.23 gi|389847587|ref|YP_006349826.1| - 4.6e-98 328.3 0.1 5.6e-98 328.0 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389847587|ref|YP_006349826.1| - 1.7e-20 73.7 1.2 1.7e-20 73.7 0.8 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Polysacc_synt PF01943.12 gi|389847585|ref|YP_006349824.1| - 1e-27 97.1 28.2 1e-27 97.1 19.6 3.0 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|389847585|ref|YP_006349824.1| - 2.9e-14 53.1 30.1 2.9e-14 53.1 20.9 3.1 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|389847585|ref|YP_006349824.1| - 5.5e-12 45.7 21.9 5.5e-12 45.7 15.2 4.1 2 1 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Scs3p PF10261.4 gi|389847585|ref|YP_006349824.1| - 0.0063 15.5 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 Inositol phospholipid synthesis and fat-storage-inducing TM Nanovirus_coat PF04660.7 gi|389847585|ref|YP_006349824.1| - 0.081 12.6 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Nanovirus coat protein DUF354 PF04007.7 gi|389847584|ref|YP_006349823.1| - 2.4e-31 108.8 0.0 2.9e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|389847584|ref|YP_006349823.1| - 0.0058 16.4 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Epimerase_2 PF02350.14 gi|389847584|ref|YP_006349823.1| - 0.025 13.3 0.0 0.036 12.8 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.21 gi|389847583|ref|YP_006349822.1| - 2.5e-18 66.3 0.1 5.2e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|389847583|ref|YP_006349822.1| - 0.014 15.2 0.0 0.13 11.9 0.0 2.5 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|389847583|ref|YP_006349822.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.9 gi|389847582|ref|YP_006349821.1| - 4.3e-43 146.8 0.0 9.4e-43 145.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|389847582|ref|YP_006349821.1| - 1.1e-22 80.0 0.0 2.2e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|389847582|ref|YP_006349821.1| - 1.6e-20 73.2 0.0 5.3e-20 71.5 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|389847582|ref|YP_006349821.1| - 2e-07 30.9 0.0 6.8e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|389847582|ref|YP_006349821.1| - 2.1e-06 27.5 0.0 1.2e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|389847582|ref|YP_006349821.1| - 2.1e-05 23.7 0.0 0.0082 15.3 0.0 2.8 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|389847582|ref|YP_006349821.1| - 0.00071 19.0 0.0 0.0018 17.7 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|389847582|ref|YP_006349821.1| - 0.0068 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1884 PF08967.5 gi|389847582|ref|YP_006349821.1| - 0.056 13.5 0.4 1.1 9.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) RE_MjaI PF09568.5 gi|389847582|ref|YP_006349821.1| - 0.078 12.5 0.9 0.79 9.2 0.0 2.5 2 1 1 3 3 3 0 MjaI restriction endonuclease Rossmann-like PF10727.4 gi|389847582|ref|YP_006349821.1| - 0.14 11.8 0.0 0.51 10.0 0.0 1.9 1 1 0 1 1 1 0 Rossmann-like domain NTP_transferase PF00483.18 gi|389847581|ref|YP_006349820.1| - 1.5e-28 99.7 0.0 2e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|389847581|ref|YP_006349820.1| - 1.3e-22 78.2 19.7 2.9e-09 36.0 1.7 4.5 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|389847581|ref|YP_006349820.1| - 2.4e-12 47.1 0.2 1.2e-11 44.9 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|389847581|ref|YP_006349820.1| - 1.7e-09 37.0 17.3 6.3e-05 22.4 0.7 4.7 2 1 3 5 5 5 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|389847581|ref|YP_006349820.1| - 1.1e-05 25.1 0.1 1.6e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|389847581|ref|YP_006349820.1| - 0.002 17.6 0.3 0.0033 16.9 0.2 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|389847581|ref|YP_006349820.1| - 0.17 11.5 0.1 0.27 10.8 0.1 1.4 1 1 0 1 1 1 0 Cytidylyltransferase SIS PF01380.17 gi|389847580|ref|YP_006349819.1| - 1.1e-41 141.5 0.5 1.6e-20 73.0 0.3 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|389847580|ref|YP_006349819.1| - 3.2e-22 78.9 0.1 6.5e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|389847580|ref|YP_006349819.1| - 6.8e-19 67.8 0.0 1.4e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|389847580|ref|YP_006349819.1| - 9e-19 67.3 0.2 3.4e-14 52.3 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|389847580|ref|YP_006349819.1| - 0.00029 19.6 0.0 0.00048 18.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Kinetochor_Ybp2 PF08568.5 gi|389847580|ref|YP_006349819.1| - 0.19 9.9 0.0 0.25 9.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family, YAP/Alf4/glomulin DUF457 PF04307.9 gi|389847578|ref|YP_006349817.1| - 2.3e-09 36.7 8.2 2.9e-09 36.4 5.7 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|389847578|ref|YP_006349817.1| - 0.0082 15.8 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C Cdc6_C PF09079.6 gi|389847577|ref|YP_006349816.1| - 4.4e-17 61.5 0.0 1e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|389847577|ref|YP_006349816.1| - 6.6e-11 42.5 2.0 2.8e-10 40.4 1.4 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|389847577|ref|YP_006349816.1| - 2.7e-10 40.4 0.0 6.8e-10 39.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|389847577|ref|YP_006349816.1| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|389847577|ref|YP_006349816.1| - 0.0012 19.0 0.0 0.0048 17.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|389847577|ref|YP_006349816.1| - 0.0024 17.6 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|389847577|ref|YP_006349816.1| - 0.0046 16.6 0.0 0.013 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|389847577|ref|YP_006349816.1| - 0.021 14.2 0.0 0.044 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|389847577|ref|YP_006349816.1| - 0.027 14.6 0.0 0.063 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|389847577|ref|YP_006349816.1| - 0.062 12.2 0.0 0.16 10.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|389847577|ref|YP_006349816.1| - 0.066 14.0 0.6 0.51 11.1 0.4 2.4 1 1 0 1 1 1 0 AAA domain HTH_21 PF13276.1 gi|389847577|ref|YP_006349816.1| - 0.079 12.9 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 HTH-like domain AAA_32 PF13654.1 gi|389847577|ref|YP_006349816.1| - 0.09 11.4 0.8 1.7 7.2 0.2 2.3 3 0 0 3 3 3 0 AAA domain PhoH PF02562.11 gi|389847577|ref|YP_006349816.1| - 0.14 11.3 0.1 8.3 5.5 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein Epimerase PF01370.16 gi|389847576|ref|YP_006349815.1| - 3.5e-43 147.7 0.1 4.3e-43 147.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|389847576|ref|YP_006349815.1| - 4.9e-15 55.1 0.1 6e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|389847576|ref|YP_006349815.1| - 4.7e-10 38.6 0.0 6.3e-10 38.2 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|389847576|ref|YP_006349815.1| - 2.8e-09 36.2 0.0 1e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|389847576|ref|YP_006349815.1| - 4.5e-09 35.6 0.1 3.5e-06 26.1 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|389847576|ref|YP_006349815.1| - 3.5e-05 23.7 0.4 0.0082 16.0 0.1 2.5 1 1 1 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|389847576|ref|YP_006349815.1| - 0.00026 21.0 0.0 0.00035 20.6 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|389847576|ref|YP_006349815.1| - 0.16 11.6 0.1 0.54 9.8 0.0 1.8 2 0 0 2 2 2 0 KR domain TIM PF00121.13 gi|389847575|ref|YP_006349814.1| - 0.028 13.4 0.1 0.031 13.3 0.1 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase TFIIE-A_C-term PF11521.3 gi|389847575|ref|YP_006349814.1| - 0.044 13.7 0.1 0.052 13.4 0.1 1.2 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha Phosphodiest PF01663.17 gi|389847574|ref|YP_006349813.1| - 1.5e-56 192.3 0.1 1.7e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.4 gi|389847574|ref|YP_006349813.1| - 0.0017 18.2 0.1 0.0032 17.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2063) DUF3800 PF12686.2 gi|389847574|ref|YP_006349813.1| - 0.024 14.2 0.2 0.076 12.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3800) Metalloenzyme PF01676.13 gi|389847574|ref|YP_006349813.1| - 0.091 12.1 0.1 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Metalloenzyme superfamily CARDB PF07705.6 gi|389847573|ref|YP_006349812.1| - 1.2e-07 31.6 23.1 1.4e-05 25.0 2.9 3.7 5 0 0 5 5 5 2 CARDB DUF3520 PF12034.3 gi|389847573|ref|YP_006349812.1| - 0.16 12.0 0.4 2.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3520) Cupredoxin_1 PF13473.1 gi|389847573|ref|YP_006349812.1| - 0.43 10.4 8.2 0.82 9.5 0.1 3.3 3 0 0 3 3 3 0 Cupredoxin-like domain DUF3244 PF11589.3 gi|389847571|ref|YP_006349810.1| - 0.0046 16.6 3.5 0.34 10.6 0.1 4.2 3 0 0 3 3 3 2 Domain of unknown function (DUF3244) DUF4480 PF13715.1 gi|389847570|ref|YP_006349809.1| - 0.00019 21.4 0.5 0.00051 20.0 0.4 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Pollen_Ole_e_I PF01190.12 gi|389847570|ref|YP_006349809.1| - 0.022 14.6 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Pollen proteins Ole e I like RskA PF10099.4 gi|389847570|ref|YP_006349809.1| - 0.03 14.0 0.3 0.03 14.0 0.2 2.8 3 1 0 3 3 3 0 Anti-sigma-K factor rskA ABC2_membrane_3 PF12698.2 gi|389847570|ref|YP_006349809.1| - 0.084 11.9 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4131 PF13567.1 gi|389847570|ref|YP_006349809.1| - 0.16 11.3 2.2 0.23 10.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) GRP PF07172.6 gi|389847570|ref|YP_006349809.1| - 0.48 10.9 24.7 1.7 9.2 17.1 1.9 1 0 0 1 1 1 0 Glycine rich protein family Herpes_UL32 PF06070.6 gi|389847570|ref|YP_006349809.1| - 7.2 4.9 10.2 8.6 4.6 7.1 1.1 1 0 0 1 1 1 0 Herpesvirus large structural phosphoprotein UL32 Peptidase_S8 PF00082.17 gi|389847569|ref|YP_006349808.1| - 2.3e-44 151.6 3.8 7.7e-44 149.9 3.0 1.6 2 0 0 2 2 2 1 Subtilase family Dockerin_1 PF00404.13 gi|389847569|ref|YP_006349808.1| - 0.00067 19.2 2.4 0.0089 15.6 0.4 2.9 2 0 0 2 2 2 1 Dockerin type I repeat UCR_Fe-S_N PF10399.4 gi|389847569|ref|YP_006349808.1| - 0.021 14.0 0.4 0.057 12.5 0.3 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EF-hand_6 PF13405.1 gi|389847569|ref|YP_006349808.1| - 0.04 13.7 0.9 2 8.5 0.1 2.7 2 0 0 2 2 2 0 EF-hand domain EF-hand_7 PF13499.1 gi|389847569|ref|YP_006349808.1| - 0.087 12.9 0.8 0.25 11.4 0.6 1.8 1 1 0 1 1 1 0 EF-hand domain pair EF-hand_1 PF00036.27 gi|389847569|ref|YP_006349808.1| - 3.8 7.0 7.0 3.6 7.1 0.1 3.0 3 0 0 3 3 3 0 EF hand TAT_signal PF10518.4 gi|389847569|ref|YP_006349808.1| - 6.8 6.9 9.8 0.19 11.8 1.9 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NTP_transferase PF00483.18 gi|389847568|ref|YP_006349807.1| - 1.2e-44 152.4 0.0 2e-44 151.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|389847568|ref|YP_006349807.1| - 4.1e-16 59.4 0.1 6.7e-16 58.7 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|389847568|ref|YP_006349807.1| - 1.5e-11 43.2 11.2 0.00034 19.9 0.1 4.4 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|389847568|ref|YP_006349807.1| - 0.0069 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|389847568|ref|YP_006349807.1| - 0.69 9.5 5.6 7.1 6.2 0.9 3.5 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF3353 PF11833.3 gi|389847566|ref|YP_006349805.1| - 0.015 14.7 5.6 0.92 8.9 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) DUF962 PF06127.6 gi|389847566|ref|YP_006349805.1| - 0.21 11.5 3.1 0.66 9.9 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF962) DUF202 PF02656.10 gi|389847566|ref|YP_006349805.1| - 0.39 10.9 5.2 11 6.3 3.6 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) HTH_IclR PF09339.5 gi|389847565|ref|YP_006349804.1| - 0.00029 20.3 0.0 0.00072 19.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389847565|ref|YP_006349804.1| - 0.0017 18.0 0.0 0.0035 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|389847565|ref|YP_006349804.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|389847565|ref|YP_006349804.1| - 0.035 13.7 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB P4Ha_N PF08336.6 gi|389847565|ref|YP_006349804.1| - 0.036 13.8 1.4 0.084 12.6 0.3 2.0 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region GntR PF00392.16 gi|389847565|ref|YP_006349804.1| - 0.04 13.3 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3987 PF13148.1 gi|389847565|ref|YP_006349804.1| - 0.043 12.3 0.2 0.073 11.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) HTH_27 PF13463.1 gi|389847565|ref|YP_006349804.1| - 0.05 13.9 0.0 0.15 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain ATP-synt_DE PF00401.15 gi|389847565|ref|YP_006349804.1| - 0.73 9.7 6.9 1.6 8.6 1.8 2.5 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NAD_binding_10 PF13460.1 gi|389847564|ref|YP_006349803.1| - 1.1e-17 64.6 0.2 4e-17 62.8 0.2 2.0 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|389847564|ref|YP_006349803.1| - 2.9e-12 46.3 0.0 7.2e-12 45.0 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|389847564|ref|YP_006349803.1| - 2.4e-10 40.2 0.1 2.4e-08 33.7 0.0 2.2 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|389847564|ref|YP_006349803.1| - 2.5e-05 23.1 0.0 3.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|389847564|ref|YP_006349803.1| - 0.0019 17.1 0.0 2.9 6.7 0.0 2.9 3 0 0 3 3 3 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|389847564|ref|YP_006349803.1| - 0.018 13.9 0.1 0.47 9.2 0.0 2.6 3 0 0 3 3 3 0 RmlD substrate binding domain Semialdhyde_dh PF01118.19 gi|389847564|ref|YP_006349803.1| - 0.055 13.7 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PGM_PMM_I PF02878.11 gi|389847563|ref|YP_006349802.1| - 7.8e-35 119.3 0.0 1.5e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|389847563|ref|YP_006349802.1| - 2.8e-21 75.7 0.1 5.8e-21 74.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|389847563|ref|YP_006349802.1| - 3.5e-18 65.6 0.0 8e-18 64.5 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|389847563|ref|YP_006349802.1| - 3.9e-12 45.9 0.2 8.6e-12 44.8 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF1188 PF06690.6 gi|389847563|ref|YP_006349802.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) 5_nucleotid_C PF02872.13 gi|389847562|ref|YP_006349801.1| - 1.8e-31 109.2 1.6 7.4e-31 107.2 0.6 2.5 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Dockerin_1 PF00404.13 gi|389847562|ref|YP_006349801.1| - 0.014 15.1 16.3 0.038 13.6 1.2 4.3 4 0 0 4 4 4 0 Dockerin type I repeat EF-hand_5 PF13202.1 gi|389847562|ref|YP_006349801.1| - 1.5 8.2 9.2 1.1 8.6 0.3 3.6 3 0 0 3 3 3 0 EF hand SOG2 PF10428.4 gi|389847561|ref|YP_006349800.1| - 0.12 10.9 2.2 0.13 10.8 1.5 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Colicin_V PF02674.11 gi|389847560|ref|YP_006349799.1| - 0.005 16.6 1.5 0.005 16.6 1.1 1.0 1 0 0 1 1 1 1 Colicin V production protein PRC PF05239.11 gi|389847559|ref|YP_006349798.1| - 1.3e-10 40.9 0.1 1.5e-10 40.7 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain hSac2 PF12456.3 gi|389847558|ref|YP_006349797.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Inositol phosphatase Pentapeptide_3 PF13576.1 gi|389847557|ref|YP_006349796.1| - 3.8e-18 65.0 21.2 3.1e-07 30.1 0.6 7.1 4 3 1 6 6 6 5 Pentapeptide repeats (9 copies) Bactofilin PF04519.8 gi|389847557|ref|YP_006349796.1| - 0.00056 19.8 0.4 2.1 8.4 0.0 4.5 3 2 0 4 4 4 1 Polymer-forming cytoskeletal YceI PF04264.8 gi|389847557|ref|YP_006349796.1| - 0.14 12.0 3.4 0.23 11.4 0.8 2.4 2 2 1 3 3 3 0 YceI-like domain Yip1 PF04893.12 gi|389847556|ref|YP_006349795.1| - 0.011 15.2 6.5 0.011 15.2 4.5 1.7 1 1 0 1 1 1 0 Yip1 domain DUF1469 PF07332.6 gi|389847556|ref|YP_006349795.1| - 1.7 8.4 15.9 1.2 8.8 1.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF1469) Rhomboid PF01694.17 gi|389847555|ref|YP_006349794.1| - 0.049 13.6 0.5 0.05 13.6 0.4 1.1 1 0 0 1 1 1 0 Rhomboid family PTS_EIIC PF02378.13 gi|389847554|ref|YP_006349793.1| - 0.021 13.6 0.1 0.026 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphotransferase system, EIIC Glypican PF01153.14 gi|389847553|ref|YP_006349792.1| - 0.0029 16.2 2.0 0.0037 15.9 1.4 1.1 1 0 0 1 1 1 1 Glypican Apt1 PF10351.4 gi|389847553|ref|YP_006349792.1| - 0.1 11.4 8.0 0.13 11.0 5.6 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF2201_N PF13203.1 gi|389847553|ref|YP_006349792.1| - 0.4 9.8 3.5 0.49 9.5 2.4 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain NPR3 PF03666.8 gi|389847553|ref|YP_006349792.1| - 1.3 7.4 11.6 1.8 7.0 8.0 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Transformer PF06495.6 gi|389847553|ref|YP_006349792.1| - 2.3 8.0 10.9 4 7.2 7.5 1.3 1 0 0 1 1 1 0 Fruit fly transformer protein zf-TFIIB PF13453.1 gi|389847552|ref|YP_006349791.1| - 1.8e-05 23.7 1.4 1.8e-05 23.7 1.0 1.5 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.9 gi|389847552|ref|YP_006349791.1| - 3.1e-05 23.4 0.8 5.9e-05 22.6 0.5 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zinc-ribbons_6 PF07191.7 gi|389847552|ref|YP_006349791.1| - 0.019 14.7 0.8 0.033 13.9 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons DUF2387 PF09526.5 gi|389847552|ref|YP_006349791.1| - 0.022 14.6 0.1 0.031 14.2 0.0 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|389847552|ref|YP_006349791.1| - 0.026 14.8 1.9 0.042 14.1 1.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|389847552|ref|YP_006349791.1| - 0.027 13.6 1.8 0.074 12.2 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|389847552|ref|YP_006349791.1| - 0.041 13.5 0.6 0.2 11.3 0.4 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Baculo_ME53 PF06061.6 gi|389847552|ref|YP_006349791.1| - 0.053 12.5 0.0 0.053 12.5 0.0 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 OrfB_Zn_ribbon PF07282.6 gi|389847552|ref|YP_006349791.1| - 0.077 12.6 0.3 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|389847552|ref|YP_006349791.1| - 0.085 12.1 0.3 0.17 11.2 0.1 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|389847552|ref|YP_006349791.1| - 0.096 12.5 1.8 0.19 11.5 1.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|389847552|ref|YP_006349791.1| - 0.098 12.3 1.5 13 5.6 0.1 2.9 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-UDP PF14569.1 gi|389847552|ref|YP_006349791.1| - 0.11 12.2 1.3 0.16 11.7 0.9 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger DM PF00751.13 gi|389847552|ref|YP_006349791.1| - 0.15 11.6 2.1 0.58 9.7 1.3 2.0 1 1 1 2 2 2 0 DM DNA binding domain zinc_ribbon_2 PF13240.1 gi|389847552|ref|YP_006349791.1| - 0.59 9.6 3.3 13 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Tubulin PF00091.20 gi|662859522|ref|YP_006349790.2| - 1e-21 77.7 0.0 1.8e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|662859522|ref|YP_006349790.2| - 0.0083 15.1 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Tubulin like Response_reg PF00072.19 gi|662859521|ref|YP_006349789.2| - 0.00014 21.7 0.0 0.00019 21.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Acyl-CoA_dh_2 PF08028.6 gi|389847546|ref|YP_006349785.1| - 0.045 14.0 0.1 0.057 13.6 0.1 1.1 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DUF1014 PF06244.7 gi|389847546|ref|YP_006349785.1| - 0.13 12.4 0.1 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1014) HTH_45 PF14947.1 gi|389847545|ref|YP_006349784.1| - 5.3e-05 22.9 0.0 7.8e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|389847545|ref|YP_006349784.1| - 0.0067 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|389847545|ref|YP_006349784.1| - 0.081 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4570 PF15134.1 gi|389847544|ref|YP_006349783.1| - 0.11 12.2 0.2 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4570) TGT_C2 PF14810.1 gi|389847543|ref|YP_006349782.1| - 1.7e-20 72.6 0.0 4.8e-20 71.1 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|389847543|ref|YP_006349782.1| - 1.1e-13 51.1 0.0 2.6e-13 49.8 0.0 1.6 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|389847543|ref|YP_006349782.1| - 2.7e-13 49.4 0.4 6.9e-13 48.1 0.3 1.6 1 0 0 1 1 1 1 PUA domain PQQ_2 PF13360.1 gi|389847542|ref|YP_006349781.1| - 3.1e-21 75.9 5.2 7.4e-17 61.6 3.1 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|389847542|ref|YP_006349781.1| - 4.6e-08 33.0 15.6 0.75 10.1 0.0 7.4 8 0 0 8 8 8 4 PQQ-like domain PQQ PF01011.16 gi|389847542|ref|YP_006349781.1| - 0.052 13.1 13.2 0.2 11.2 0.1 5.1 6 0 0 6 6 6 0 PQQ enzyme repeat PAS_7 PF12860.2 gi|389847540|ref|YP_006349779.1| - 8.2e-13 48.3 4.2 0.085 12.8 0.0 5.3 5 0 0 5 5 5 5 PAS fold PrcB_C PF14343.1 gi|389847540|ref|YP_006349779.1| - 0.0012 18.5 2.7 0.14 11.8 0.0 4.2 4 0 0 4 4 4 1 PrcB C-terminal Collagen_bind PF05737.7 gi|389847540|ref|YP_006349779.1| - 0.025 14.7 3.0 2.5 8.2 0.1 3.6 3 0 0 3 3 3 0 Collagen binding domain UFD1 PF03152.9 gi|389847540|ref|YP_006349779.1| - 0.059 12.4 0.0 39 3.3 0.0 3.9 4 0 0 4 4 4 0 Ubiquitin fusion degradation protein UFD1 Hexapep PF00132.19 gi|389847539|ref|YP_006349778.1| - 1.5e-13 49.5 7.4 1.2e-07 30.9 1.7 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|389847539|ref|YP_006349778.1| - 0.0002 21.5 0.0 0.00034 20.8 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|389847539|ref|YP_006349778.1| - 0.002 17.6 1.7 0.002 17.6 1.2 2.7 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase HTH_5 PF01022.15 gi|389847537|ref|YP_006349776.1| - 4.8e-10 38.9 0.0 5.8e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389847537|ref|YP_006349776.1| - 1.3e-06 28.1 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|389847537|ref|YP_006349776.1| - 0.00012 21.6 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|389847537|ref|YP_006349776.1| - 0.00049 19.8 0.0 0.00072 19.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|389847537|ref|YP_006349776.1| - 0.0013 18.0 0.0 0.002 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|389847537|ref|YP_006349776.1| - 0.01 15.9 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor TFIIE_alpha PF02002.12 gi|389847537|ref|YP_006349776.1| - 0.011 15.2 0.0 0.013 14.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Tnp_ISL3 PF13542.1 gi|389847537|ref|YP_006349776.1| - 0.024 13.8 0.3 1.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Phage_rep_org_N PF09681.5 gi|389847537|ref|YP_006349776.1| - 0.038 13.5 0.0 0.04 13.5 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|389847537|ref|YP_006349776.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain TGT PF01702.13 gi|389847536|ref|YP_006349775.1| - 1.2e-47 162.2 0.0 1.6e-47 161.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|389847536|ref|YP_006349775.1| - 0.0064 16.2 0.0 0.24 11.2 0.0 2.5 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation 7TMR-DISM_7TM PF07695.6 gi|389847535|ref|YP_006349774.1| - 0.005 16.5 0.4 0.0055 16.3 0.3 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling MCPsignal PF00015.16 gi|389847534|ref|YP_006349773.1| - 5.9e-47 159.9 39.5 5.9e-47 159.9 27.4 3.6 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|389847534|ref|YP_006349773.1| - 0.0037 17.0 37.3 0.053 13.3 2.4 6.2 4 2 2 6 6 6 3 Bacterial protein of unknown function (DUF948) LXG PF04740.7 gi|389847534|ref|YP_006349773.1| - 0.0039 16.9 13.7 0.0039 16.9 9.5 4.3 3 2 0 3 3 3 1 LXG domain of WXG superfamily Nup54 PF13874.1 gi|389847534|ref|YP_006349773.1| - 0.011 15.4 5.7 0.011 15.4 3.9 3.9 3 2 2 5 5 5 0 Nucleoporin complex subunit 54 Mod_r PF07200.8 gi|389847534|ref|YP_006349773.1| - 0.13 12.2 38.4 0.33 10.8 0.6 4.6 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF869 PF05911.6 gi|389847534|ref|YP_006349773.1| - 0.19 9.9 47.5 0.64 8.1 12.9 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Laminin_II PF06009.7 gi|389847534|ref|YP_006349773.1| - 0.23 11.2 47.2 0.27 11.0 2.1 4.8 2 2 2 4 4 4 0 Laminin Domain II AAA_27 PF13514.1 gi|389847534|ref|YP_006349773.1| - 0.24 9.0 52.0 0.021 12.5 16.8 2.1 1 1 1 2 2 2 0 AAA domain Laminin_I PF06008.9 gi|389847534|ref|YP_006349773.1| - 0.37 10.0 49.0 5.9 6.1 4.1 3.8 1 1 1 2 2 2 0 Laminin Domain I BLOC1_2 PF10046.4 gi|389847534|ref|YP_006349773.1| - 0.39 10.8 47.2 0.11 12.7 2.0 6.3 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Myosin_tail_1 PF01576.14 gi|389847534|ref|YP_006349773.1| - 0.5 8.0 53.7 0.0069 14.1 20.3 2.9 1 1 1 2 2 2 0 Myosin tail FlgN PF05130.7 gi|389847534|ref|YP_006349773.1| - 0.52 10.5 39.1 0.36 11.0 0.2 5.0 2 1 3 5 5 5 0 FlgN protein DASH_Dad4 PF08650.5 gi|389847534|ref|YP_006349773.1| - 0.71 9.8 4.3 20 5.1 0.1 3.2 3 0 0 3 3 3 0 DASH complex subunit Dad4 Spc7 PF08317.6 gi|389847534|ref|YP_006349773.1| - 0.94 8.0 43.5 0.19 10.3 8.9 3.5 2 1 1 3 3 3 0 Spc7 kinetochore protein Pex24p PF06398.6 gi|389847534|ref|YP_006349773.1| - 4.5 5.9 5.6 7.2 5.3 0.4 2.5 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Cupin_2 PF07883.6 gi|662859520|ref|YP_006349772.2| - 5.7e-14 51.3 0.0 9.7e-14 50.6 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|662859520|ref|YP_006349772.2| - 7.7e-07 28.4 0.0 1.5e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|662859520|ref|YP_006349772.2| - 1.4e-05 24.7 0.0 1.7e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|662859520|ref|YP_006349772.2| - 0.0058 16.3 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|662859520|ref|YP_006349772.2| - 0.079 12.3 0.0 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 Cupin CitMHS PF03600.11 gi|662859519|ref|YP_006349771.2| - 4.8e-43 147.0 0.0 7.2e-37 126.7 0.0 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|662859519|ref|YP_006349771.2| - 1.8e-23 83.1 40.1 5.3e-17 61.8 13.5 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|662859519|ref|YP_006349771.2| - 2.1e-20 72.0 2.3 8.1e-13 47.7 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain Abi PF02517.11 gi|389847531|ref|YP_006349770.1| - 1.7e-16 60.1 1.7 1.7e-16 60.1 1.2 2.4 2 1 0 2 2 2 1 CAAX protease self-immunity NUDIX PF00293.23 gi|389847530|ref|YP_006349769.1| - 1.6e-12 47.2 0.2 2.1e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain FliD_C PF07195.7 gi|389847529|ref|YP_006349768.1| - 0.0025 17.1 0.0 0.21 10.8 0.0 2.2 2 0 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus NPV_P10 PF05531.7 gi|389847529|ref|YP_006349768.1| - 0.14 12.4 0.0 2.3 8.5 0.0 2.5 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Methyltransf_23 PF13489.1 gi|389847528|ref|YP_006349767.1| - 5.4e-13 48.9 0.2 7.3e-13 48.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|389847528|ref|YP_006349767.1| - 1.5e-11 44.5 0.0 2.3e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|389847528|ref|YP_006349767.1| - 1.2e-09 38.4 0.0 2.2e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|389847528|ref|YP_006349767.1| - 7e-07 28.9 0.0 8e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|389847528|ref|YP_006349767.1| - 2.8e-06 26.8 0.0 4.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|389847528|ref|YP_006349767.1| - 7.1e-06 26.0 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|389847528|ref|YP_006349767.1| - 7.3e-06 26.5 0.0 1e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|389847528|ref|YP_006349767.1| - 1.9e-05 25.0 0.0 3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|389847528|ref|YP_006349767.1| - 0.011 14.9 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|389847528|ref|YP_006349767.1| - 0.056 12.4 0.0 0.077 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.9 gi|389847528|ref|YP_006349767.1| - 0.071 12.4 0.0 0.099 12.0 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Peripla_BP_2 PF01497.13 gi|389847527|ref|YP_006349766.1| - 3.5e-22 78.7 0.0 5e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389847527|ref|YP_006349766.1| - 0.41 10.7 2.0 0.87 9.7 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CSD PF00313.17 gi|389847526|ref|YP_006349765.1| - 6e-19 67.5 0.0 6.5e-19 67.4 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|389847526|ref|YP_006349765.1| - 0.017 14.8 0.2 0.022 14.4 0.1 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|389847526|ref|YP_006349765.1| - 0.037 13.5 3.3 0.052 13.0 2.3 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain FliE PF02049.13 gi|389847525|ref|YP_006349764.1| - 0.17 11.9 4.5 0.29 11.2 2.1 2.2 1 1 1 2 2 2 0 Flagellar hook-basal body complex protein FliE Peptidase_MA_2 PF13485.1 gi|389847524|ref|YP_006349763.1| - 6.9e-08 32.5 0.1 1.5e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily DUF2268 PF10026.4 gi|389847524|ref|YP_006349763.1| - 2.9e-05 23.5 0.0 0.00027 20.3 0.0 2.3 2 1 0 2 2 2 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.4 gi|389847524|ref|YP_006349763.1| - 0.00013 21.6 0.0 0.0003 20.4 0.0 1.6 1 0 0 1 1 1 1 SprT-like family Peptidase_M48 PF01435.13 gi|389847524|ref|YP_006349763.1| - 0.00018 21.1 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 DUF4344 PF14247.1 gi|389847524|ref|YP_006349763.1| - 0.087 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4344) Abhydrolase_6 PF12697.2 gi|389847523|ref|YP_006349762.1| - 8.1e-38 130.5 0.6 9.9e-38 130.2 0.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389847523|ref|YP_006349762.1| - 2e-18 66.8 0.0 1e-16 61.2 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|389847523|ref|YP_006349762.1| - 3e-17 62.7 0.0 6.1e-17 61.7 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|389847523|ref|YP_006349762.1| - 6.4e-05 22.7 0.3 0.00019 21.2 0.2 1.8 1 0 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|389847523|ref|YP_006349762.1| - 0.00087 19.5 0.0 0.00098 19.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Methyltrn_RNA_2 PF04013.7 gi|389847522|ref|YP_006349761.1| - 2.3e-68 229.6 0.0 2.6e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase ABC2_membrane PF01061.19 gi|389847521|ref|YP_006349760.1| - 2.7e-31 108.3 16.5 3.4e-31 108.0 11.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|389847521|ref|YP_006349760.1| - 3.5e-06 26.2 19.0 4.8e-06 25.8 13.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Wzy_C PF04932.10 gi|389847521|ref|YP_006349760.1| - 0.18 11.5 6.9 0.13 11.9 2.9 2.1 2 0 0 2 2 2 0 O-Antigen ligase O-antigen_lig PF13425.1 gi|389847521|ref|YP_006349760.1| - 9 6.2 16.0 4.8 7.1 7.1 2.6 1 1 1 2 2 2 0 O-antigen ligase like membrane protein ABC_tran PF00005.22 gi|389847520|ref|YP_006349759.1| - 2.6e-30 105.4 0.0 3.8e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847520|ref|YP_006349759.1| - 8.5e-17 62.0 0.4 1.5e-10 41.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|389847520|ref|YP_006349759.1| - 0.0011 18.4 0.0 0.0032 16.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389847520|ref|YP_006349759.1| - 0.0016 17.9 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|389847520|ref|YP_006349759.1| - 0.0029 17.3 0.2 1.1 8.9 0.0 3.0 3 0 0 3 3 3 1 NTPase AAA_15 PF13175.1 gi|389847520|ref|YP_006349759.1| - 0.0032 16.5 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|389847520|ref|YP_006349759.1| - 0.0048 17.2 0.0 0.0065 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|389847520|ref|YP_006349759.1| - 0.034 13.6 0.1 0.066 12.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|389847520|ref|YP_006349759.1| - 0.046 12.9 0.1 0.18 10.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|389847520|ref|YP_006349759.1| - 0.09 12.5 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain SMC_N PF02463.14 gi|389847520|ref|YP_006349759.1| - 0.17 11.0 0.0 2 7.6 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PEP_mutase PF13714.1 gi|389847519|ref|YP_006349758.1| - 3.5e-44 150.7 0.0 4.5e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|389847519|ref|YP_006349758.1| - 1.2e-35 122.7 2.2 2.4e-17 62.3 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family HpcH_HpaI PF03328.9 gi|389847518|ref|YP_006349757.1| - 7.7e-08 31.4 0.0 2.4e-07 29.8 0.0 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF4112 PF13430.1 gi|389847517|ref|YP_006349756.1| - 1.2e-34 118.3 0.0 2e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) TAT_signal PF10518.4 gi|389847516|ref|YP_006349755.1| - 0.0032 17.3 1.6 0.0068 16.3 1.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.5 gi|389847516|ref|YP_006349755.1| - 0.063 13.2 0.5 0.11 12.5 0.4 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit DUF1628 PF07790.6 gi|389847516|ref|YP_006349755.1| - 0.81 10.4 0.1 0.81 10.4 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) OrfB_IS605 PF01385.14 gi|389847515|ref|YP_006349754.1| - 4.5e-24 85.1 4.3 9.6e-24 84.0 0.4 2.2 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|389847515|ref|YP_006349754.1| - 2.2e-21 75.2 0.1 7.7e-21 73.5 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.1 gi|389847515|ref|YP_006349754.1| - 0.02 14.4 0.5 0.058 12.8 0.3 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3242 PF11586.3 gi|389847515|ref|YP_006349754.1| - 0.025 14.1 0.3 0.077 12.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3242) zf-ribbon_3 PF13248.1 gi|389847515|ref|YP_006349754.1| - 0.068 12.3 1.2 1.2 8.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|389847515|ref|YP_006349754.1| - 0.15 11.8 1.7 7.5 6.3 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Antitoxin-MazE PF04014.13 gi|389847514|ref|YP_006349753.1| - 2.5e-08 33.4 0.6 2.7e-08 33.3 0.4 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE CDC48_N PF02359.13 gi|389847514|ref|YP_006349753.1| - 0.034 14.0 0.0 0.037 13.9 0.0 1.0 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain EamA PF00892.15 gi|389847513|ref|YP_006349752.1| - 4.1e-32 110.8 30.9 8.2e-19 67.8 6.9 2.4 3 0 0 3 3 3 2 EamA-like transporter family TPT PF03151.11 gi|389847513|ref|YP_006349752.1| - 1.9e-06 27.6 16.0 8.4e-06 25.5 6.2 2.4 2 0 0 2 2 2 2 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|389847513|ref|YP_006349752.1| - 0.23 11.2 4.4 0.84 9.4 0.6 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0546 THUMP PF02926.12 gi|389847512|ref|YP_006349751.1| - 2.3e-08 34.0 0.0 4.1e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|389847512|ref|YP_006349751.1| - 0.0022 17.9 1.5 0.0022 17.9 1.1 2.9 3 0 0 3 3 3 1 DnaJ central domain DUF3279 PF11682.3 gi|389847512|ref|YP_006349751.1| - 0.094 12.2 0.7 0.22 11.0 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) DZR PF12773.2 gi|389847512|ref|YP_006349751.1| - 1.7 8.5 6.8 3.5 7.5 0.8 2.5 2 1 0 2 2 2 0 Double zinc ribbon RNase_HII PF01351.13 gi|389847511|ref|YP_006349750.1| - 5.1e-38 130.7 0.1 5.8e-38 130.5 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.11 gi|389847509|ref|YP_006349748.1| - 6.5e-14 51.5 5.7 1.2e-13 50.6 3.9 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|389847509|ref|YP_006349748.1| - 0.00016 20.4 11.2 0.00034 19.4 7.8 1.4 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.3 gi|389847509|ref|YP_006349748.1| - 0.00017 21.0 1.8 0.00037 20.0 1.2 1.5 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation MGC-24 PF05283.6 gi|389847509|ref|YP_006349748.1| - 0.052 13.3 0.6 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) SecD_SecF PF02355.11 gi|389847508|ref|YP_006349747.1| - 4.8e-31 107.4 15.0 4.8e-31 107.4 10.4 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|389847508|ref|YP_006349747.1| - 8.8e-05 21.5 0.0 0.00032 19.7 0.0 2.1 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|389847508|ref|YP_006349747.1| - 0.077 10.9 14.4 0.1 10.4 10.0 1.1 1 0 0 1 1 1 0 Patched family Herpes_US9 PF06072.6 gi|389847508|ref|YP_006349747.1| - 0.18 11.6 0.1 0.18 11.6 0.1 2.6 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 PepSY_2 PF13670.1 gi|389847508|ref|YP_006349747.1| - 0.26 11.1 1.2 0.73 9.7 0.1 2.3 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain Acetyltransf_1 PF00583.19 gi|389847505|ref|YP_006349744.1| - 4.5e-12 45.8 0.0 7.8e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|389847505|ref|YP_006349744.1| - 1.5e-05 24.6 0.0 2.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|389847505|ref|YP_006349744.1| - 4e-05 23.7 0.0 5.9e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847505|ref|YP_006349744.1| - 7.7e-05 22.7 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389847505|ref|YP_006349744.1| - 0.00092 19.3 0.0 0.0016 18.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847505|ref|YP_006349744.1| - 0.0014 18.4 0.0 0.004 16.9 0.0 1.8 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|389847505|ref|YP_006349744.1| - 0.0053 16.6 0.0 0.0075 16.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389847505|ref|YP_006349744.1| - 0.014 15.2 0.1 0.063 13.1 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|389847505|ref|YP_006349744.1| - 0.014 15.1 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase COX4_pro_2 PF07835.7 gi|389847505|ref|YP_006349744.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial aa3 type cytochrome c oxidase subunit IV CDP-OH_P_transf PF01066.16 gi|389847504|ref|YP_006349743.1| - 1.1e-15 57.7 5.4 1.1e-15 57.7 3.7 1.8 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PHP_C PF13263.1 gi|389847503|ref|YP_006349742.1| - 6.9e-20 70.3 0.1 4.5e-19 67.7 0.1 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|389847503|ref|YP_006349742.1| - 2e-09 37.4 0.0 9.4e-09 35.2 0.0 1.9 1 1 0 1 1 1 1 PHP domain SNARE_assoc PF09335.6 gi|389847502|ref|YP_006349741.1| - 1.3e-24 86.7 4.8 1.3e-24 86.7 3.4 2.0 3 0 0 3 3 3 1 SNARE associated Golgi protein Yip1 PF04893.12 gi|389847501|ref|YP_006349740.1| - 0.31 10.5 16.1 0.55 9.7 11.2 1.5 1 1 0 1 1 1 0 Yip1 domain DUF4131 PF13567.1 gi|389847501|ref|YP_006349740.1| - 2.9 7.2 8.0 12 5.2 5.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF805 PF05656.9 gi|389847501|ref|YP_006349740.1| - 6.1 6.6 7.0 9.5 6.0 4.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF485 PF04341.7 gi|389847501|ref|YP_006349740.1| - 8.8 6.1 13.2 1.3 8.7 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF485 PGI PF00342.14 gi|662859518|ref|YP_006349739.2| - 7.8e-54 182.8 0.0 1e-53 182.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase Abi PF02517.11 gi|389847499|ref|YP_006349738.1| - 1e-17 63.9 7.4 1e-17 63.9 5.2 2.0 2 1 0 2 2 2 1 CAAX protease self-immunity UCR_Fe-S_N PF10399.4 gi|389847499|ref|YP_006349738.1| - 0.062 12.4 0.3 0.062 12.4 0.2 2.7 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PrgI PF12666.2 gi|389847499|ref|YP_006349738.1| - 6.5 6.9 11.6 2.1 8.5 0.1 3.1 3 0 0 3 3 3 0 PrgI family protein DUF4131 PF13567.1 gi|389847499|ref|YP_006349738.1| - 8.3 5.7 9.2 9.6 5.5 1.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) PIN PF01850.16 gi|389847498|ref|YP_006349737.1| - 0.0045 17.3 1.5 0.027 14.7 0.5 2.0 1 1 1 2 2 2 1 PIN domain DUF4411 PF14367.1 gi|389847498|ref|YP_006349737.1| - 0.0051 16.5 0.2 0.021 14.5 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) Rad50_zn_hook PF04423.9 gi|389847498|ref|YP_006349737.1| - 0.0052 16.2 3.9 0.49 9.9 0.1 2.9 2 1 1 3 3 3 2 Rad50 zinc hook motif DZR PF12773.2 gi|389847498|ref|YP_006349737.1| - 0.0068 16.1 0.6 0.01 15.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0278 PF08745.6 gi|389847498|ref|YP_006349737.1| - 0.008 15.4 0.4 0.012 14.9 0.3 1.2 1 0 0 1 1 1 1 UPF0278 family Mut7-C PF01927.11 gi|389847498|ref|YP_006349737.1| - 0.022 14.7 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C3HC4_3 PF13920.1 gi|389847498|ref|YP_006349737.1| - 0.024 14.3 0.7 0.034 13.8 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2 PF00096.21 gi|389847498|ref|YP_006349737.1| - 0.03 14.6 1.9 3 8.3 0.2 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.6 gi|389847498|ref|YP_006349737.1| - 0.08 12.7 0.8 0.16 11.7 0.5 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|389847498|ref|YP_006349737.1| - 0.13 11.9 1.7 0.21 11.3 1.2 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|389847498|ref|YP_006349737.1| - 0.2 11.6 4.3 2.3 8.2 3.0 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC_2 PF13913.1 gi|389847498|ref|YP_006349737.1| - 0.81 9.4 8.2 0.33 10.6 2.4 2.2 1 1 1 2 2 2 0 zinc-finger of a C2HC-type PRC PF05239.11 gi|389847497|ref|YP_006349736.1| - 8.7e-10 38.3 0.0 9.9e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.22 gi|389847496|ref|YP_006349735.1| - 6.7e-32 110.4 0.0 4.1e-31 107.8 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|389847496|ref|YP_006349735.1| - 1.9e-24 85.6 1.1 4.6e-24 84.4 0.8 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|389847496|ref|YP_006349735.1| - 1.6e-13 50.5 8.7 1.7e-11 44.0 0.5 3.1 2 1 1 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|389847496|ref|YP_006349735.1| - 1e-10 41.0 0.1 2.8e-10 39.7 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|389847496|ref|YP_006349735.1| - 2.2e-07 30.8 0.1 6.9e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|389847496|ref|YP_006349735.1| - 0.00018 21.3 0.1 0.27 11.0 0.0 2.7 1 1 0 2 2 2 2 Dynamin family Miro PF08477.8 gi|389847496|ref|YP_006349735.1| - 0.0033 17.9 0.0 0.0076 16.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|389847496|ref|YP_006349735.1| - 0.012 15.1 0.0 0.034 13.6 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|389847496|ref|YP_006349735.1| - 0.027 13.8 0.0 0.084 12.2 0.0 1.8 1 1 0 1 1 1 0 Ras family MobB PF03205.9 gi|389847496|ref|YP_006349735.1| - 0.035 13.8 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B VPEP PF07589.6 gi|389847495|ref|YP_006349734.1| - 0.03 14.2 2.9 0.03 14.2 2.0 2.0 1 1 1 2 2 2 0 PEP-CTERM motif PGPGW PF09656.5 gi|389847495|ref|YP_006349734.1| - 0.073 12.3 4.0 0.083 12.2 2.7 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF454 PF04304.8 gi|389847495|ref|YP_006349734.1| - 0.47 10.5 2.3 0.64 10.0 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF454) Fst_toxin PF13955.1 gi|389847495|ref|YP_006349734.1| - 1.9 8.2 5.8 34 4.2 3.5 2.4 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system Chisel PF15355.1 gi|389847494|ref|YP_006349733.1| - 0.032 14.2 0.1 0.077 13.0 0.0 1.7 2 0 0 2 2 2 0 Stretch-responsive small skeletal muscle X protein, Chisel HATPase_c PF02518.21 gi|662859517|ref|YP_006349732.2| - 5.2e-15 55.1 0.1 1.5e-14 53.6 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|662859517|ref|YP_006349732.2| - 9.4e-10 38.3 0.1 1.9e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|662859517|ref|YP_006349732.2| - 4.6e-06 26.5 0.3 1e-05 25.4 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|662859517|ref|YP_006349732.2| - 0.0017 18.0 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2328 PF10090.4 gi|662859517|ref|YP_006349732.2| - 0.031 13.4 0.1 0.051 12.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2328) HATPase_c_5 PF14501.1 gi|662859517|ref|YP_006349732.2| - 0.09 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 GHKL domain PvlArgDC PF01862.11 gi|389847492|ref|YP_006349731.1| - 1.3e-27 96.3 0.1 1.5e-27 96.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.24 gi|662859516|ref|YP_006349730.2| - 5.9e-46 155.9 0.6 5.9e-45 152.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|662859516|ref|YP_006349730.2| - 2.1e-08 34.2 0.1 5.2e-08 32.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|662859516|ref|YP_006349730.2| - 8.2e-08 32.0 2.5 3.3e-07 30.1 0.0 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|662859516|ref|YP_006349730.2| - 1.4e-07 31.6 0.9 0.0027 17.7 0.0 3.3 2 1 2 4 4 4 3 AAA ATPase domain AAA_22 PF13401.1 gi|662859516|ref|YP_006349730.2| - 2.1e-07 31.1 2.1 0.00013 22.0 0.1 3.3 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|662859516|ref|YP_006349730.2| - 3.3e-07 29.6 0.2 9.8e-07 28.0 0.0 1.8 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|662859516|ref|YP_006349730.2| - 9.3e-06 26.4 1.1 3.3e-05 24.6 0.1 2.5 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|662859516|ref|YP_006349730.2| - 5.7e-05 22.1 0.0 0.00013 20.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|662859516|ref|YP_006349730.2| - 5.9e-05 22.9 0.0 0.00029 20.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|662859516|ref|YP_006349730.2| - 0.00032 19.5 0.1 0.00095 17.9 0.0 1.8 2 0 0 2 2 2 1 TIP49 C-terminus AAA_28 PF13521.1 gi|662859516|ref|YP_006349730.2| - 0.00048 20.1 0.4 0.0065 16.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|662859516|ref|YP_006349730.2| - 0.00071 19.8 0.4 0.011 16.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|662859516|ref|YP_006349730.2| - 0.001 18.5 0.0 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|662859516|ref|YP_006349730.2| - 0.0011 18.7 0.1 0.042 13.5 0.0 2.4 1 1 1 2 2 2 1 NACHT domain NTPase_1 PF03266.10 gi|662859516|ref|YP_006349730.2| - 0.0012 18.6 0.9 0.024 14.3 0.0 2.7 3 0 0 3 3 2 1 NTPase Mg_chelatase PF01078.16 gi|662859516|ref|YP_006349730.2| - 0.0015 17.7 0.6 0.0032 16.6 0.0 1.8 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|662859516|ref|YP_006349730.2| - 0.0015 18.1 0.6 0.0093 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|662859516|ref|YP_006349730.2| - 0.0019 17.9 0.1 0.0053 16.4 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|662859516|ref|YP_006349730.2| - 0.0023 17.0 0.2 0.0062 15.6 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Sigma54_activat PF00158.21 gi|662859516|ref|YP_006349730.2| - 0.0037 16.7 0.1 0.034 13.6 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|662859516|ref|YP_006349730.2| - 0.004 17.0 0.1 0.012 15.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain RNA_helicase PF00910.17 gi|662859516|ref|YP_006349730.2| - 0.0045 17.1 0.0 0.02 15.0 0.0 2.1 2 0 0 2 2 2 1 RNA helicase Atrophin-1 PF03154.10 gi|662859516|ref|YP_006349730.2| - 0.01 14.0 0.4 0.014 13.5 0.3 1.1 1 0 0 1 1 1 0 Atrophin-1 family NB-ARC PF00931.17 gi|662859516|ref|YP_006349730.2| - 0.012 14.4 0.1 0.075 11.8 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.1 gi|662859516|ref|YP_006349730.2| - 0.013 14.9 8.0 0.051 12.9 0.1 3.4 1 1 1 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|662859516|ref|YP_006349730.2| - 0.014 15.1 0.4 0.25 10.9 0.0 2.6 2 1 1 3 3 3 0 Archaeal ATPase IPT PF01745.11 gi|662859516|ref|YP_006349730.2| - 0.015 14.4 0.8 0.71 9.0 0.0 2.6 3 0 0 3 3 3 0 Isopentenyl transferase AAA_3 PF07726.6 gi|662859516|ref|YP_006349730.2| - 0.021 14.4 0.0 0.04 13.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2203 PF09969.4 gi|662859516|ref|YP_006349730.2| - 0.024 14.8 0.7 0.07 13.3 0.5 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Parvo_NS1 PF01057.12 gi|662859516|ref|YP_006349730.2| - 0.027 13.3 0.6 0.089 11.6 0.0 1.9 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|662859516|ref|YP_006349730.2| - 0.036 13.1 0.2 0.43 9.6 0.0 2.5 1 1 1 2 2 2 0 KaiC PhoH PF02562.11 gi|662859516|ref|YP_006349730.2| - 0.041 13.1 0.1 0.27 10.4 0.1 2.1 2 0 0 2 2 2 0 PhoH-like protein DUF904 PF06005.7 gi|662859516|ref|YP_006349730.2| - 0.048 13.9 0.5 0.15 12.4 0.3 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF904) Sigma54_activ_2 PF14532.1 gi|662859516|ref|YP_006349730.2| - 0.049 13.6 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain KAP_NTPase PF07693.9 gi|662859516|ref|YP_006349730.2| - 0.057 12.3 0.0 0.76 8.7 0.0 2.1 1 1 0 1 1 1 0 KAP family P-loop domain Bac_DnaA PF00308.13 gi|662859516|ref|YP_006349730.2| - 0.065 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein Gon7 PF08738.5 gi|662859516|ref|YP_006349730.2| - 0.07 13.1 0.8 0.15 12.0 0.5 1.5 1 0 0 1 1 1 0 Gon7 family DUF2075 PF09848.4 gi|662859516|ref|YP_006349730.2| - 0.083 11.8 0.7 0.44 9.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DMPK_coil PF08826.5 gi|662859516|ref|YP_006349730.2| - 0.12 12.3 2.1 0.47 10.3 1.4 2.1 1 0 0 1 1 1 0 DMPK coiled coil domain like ABC_tran PF00005.22 gi|662859516|ref|YP_006349730.2| - 0.12 12.6 0.2 0.62 10.3 0.0 2.2 2 0 0 2 2 2 0 ABC transporter SKI PF01202.17 gi|662859516|ref|YP_006349730.2| - 0.22 11.3 2.2 1 9.2 0.1 2.6 2 1 0 2 2 2 0 Shikimate kinase dUTPase PF00692.14 gi|389847490|ref|YP_006349729.1| - 2.6e-12 46.3 0.0 3.6e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|389847490|ref|YP_006349729.1| - 0.025 12.9 0.0 0.038 12.3 0.0 1.3 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.15 gi|389847489|ref|YP_006349728.1| - 2.3e-99 332.9 0.2 2.4e-70 237.3 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|389847489|ref|YP_006349728.1| - 2.9e-21 75.9 0.0 5.5e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Acetyltransf_1 PF00583.19 gi|389847488|ref|YP_006349727.1| - 5.2e-15 55.2 0.0 7.2e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847488|ref|YP_006349727.1| - 1.1e-10 41.6 0.0 1.4e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847488|ref|YP_006349727.1| - 2.4e-09 36.8 0.0 3.6e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|389847488|ref|YP_006349727.1| - 1.6e-08 34.6 0.0 2.3e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389847488|ref|YP_006349727.1| - 1.2e-05 25.1 0.0 1.9e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389847488|ref|YP_006349727.1| - 2.7e-05 24.0 0.0 3.6e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|389847488|ref|YP_006349727.1| - 0.0018 17.8 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|389847488|ref|YP_006349727.1| - 0.0028 17.8 0.0 0.0032 17.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389847488|ref|YP_006349727.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_10 PF04967.7 gi|389847487|ref|YP_006349726.1| - 3.2e-19 68.2 0.0 8.9e-19 66.8 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|389847487|ref|YP_006349726.1| - 4.2e-16 58.7 0.0 4.1e-15 55.5 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|389847487|ref|YP_006349726.1| - 9.6e-13 48.4 0.0 6.4e-12 45.7 0.0 2.5 2 1 1 3 3 2 1 PAS domain PAS_4 PF08448.5 gi|389847487|ref|YP_006349726.1| - 3.2e-11 43.2 0.4 3.2e-11 43.2 0.3 3.3 4 0 0 4 4 4 1 PAS fold GAF_2 PF13185.1 gi|389847487|ref|YP_006349726.1| - 3e-10 40.7 7.7 0.00012 22.5 0.3 3.4 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.1 gi|389847487|ref|YP_006349726.1| - 5.5e-07 29.2 0.0 2.8e-06 26.9 0.0 2.3 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|389847487|ref|YP_006349726.1| - 9e-07 29.0 0.4 0.01 15.9 0.0 2.9 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.19 gi|389847487|ref|YP_006349726.1| - 3.3e-06 27.0 0.0 9.8e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.2 gi|389847487|ref|YP_006349726.1| - 4e-06 26.8 2.8 7.8e-06 25.8 0.0 2.8 4 0 0 4 4 4 1 PAS fold OKR_DC_1_N PF03709.10 gi|389847487|ref|YP_006349726.1| - 4.3e-05 23.5 0.9 0.00032 20.7 0.0 2.8 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.21 gi|389847487|ref|YP_006349726.1| - 0.00023 21.3 1.8 0.28 11.2 0.0 3.3 2 1 1 3 3 3 2 GAF domain HTH_24 PF13412.1 gi|389847487|ref|YP_006349726.1| - 0.038 13.3 0.0 1.3 8.4 0.0 3.4 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding PmbA_TldD PF01523.11 gi|389847486|ref|YP_006349725.1| - 0.086 12.0 0.0 0.15 11.3 0.0 1.2 1 1 0 1 1 1 0 Putative modulator of DNA gyrase GTSE1_N PF15259.1 gi|389847485|ref|YP_006349724.1| - 0.053 13.4 0.1 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 G-2 and S-phase expressed 1 Nop14 PF04147.7 gi|389847484|ref|YP_006349723.1| - 2.1 6.1 13.1 2 6.2 9.1 1.1 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.9 gi|389847484|ref|YP_006349723.1| - 6.8 4.5 9.7 8.8 4.2 6.7 1.1 1 0 0 1 1 1 0 CDC45-like protein NUDIX PF00293.23 gi|389847483|ref|YP_006349722.1| - 6.8e-18 64.6 0.7 1e-17 64.0 0.5 1.2 1 0 0 1 1 1 1 NUDIX domain Rhodanese PF00581.15 gi|389847482|ref|YP_006349721.1| - 5.7e-13 49.2 0.0 7.9e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain SUI1 PF01253.17 gi|389847481|ref|YP_006349720.1| - 1.5e-25 88.8 0.0 1.7e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|389847481|ref|YP_006349720.1| - 0.17 11.0 0.7 0.2 10.8 0.5 1.1 1 0 0 1 1 1 0 DTW domain DUF1152 PF06626.7 gi|662859515|ref|YP_006349719.2| - 0.034 13.2 0.2 0.46 9.5 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1152) NAM-associated PF14303.1 gi|662859515|ref|YP_006349719.2| - 7.2 6.9 11.0 9.5 6.5 0.5 2.5 2 0 0 2 2 2 0 No apical meristem-associated C-terminal domain DUF4366 PF14283.1 gi|662859514|ref|YP_006349718.2| - 0.025 14.0 0.1 2 7.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) Anophelin PF10731.4 gi|662859514|ref|YP_006349718.2| - 0.026 14.6 0.4 0.026 14.6 0.2 2.6 3 0 0 3 3 3 0 Thrombin inhibitor from mosquito AAA_3 PF07726.6 gi|662859514|ref|YP_006349718.2| - 0.054 13.1 0.0 0.13 11.8 0.0 1.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MarR_2 PF12802.2 gi|662859514|ref|YP_006349718.2| - 0.11 12.1 0.1 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|662859514|ref|YP_006349718.2| - 0.18 11.2 0.0 0.35 10.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Transglut_core PF01841.14 gi|389847478|ref|YP_006349717.1| - 4.6e-30 104.1 1.1 7e-30 103.5 0.1 1.9 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|389847478|ref|YP_006349717.1| - 4e-07 29.9 9.8 4e-07 29.9 6.8 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|389847478|ref|YP_006349717.1| - 6.8e-05 22.6 0.0 0.0002 21.1 0.0 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4218 PF13960.1 gi|389847478|ref|YP_006349717.1| - 0.3 10.5 0.1 0.5 9.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) MAGP PF05507.6 gi|389847478|ref|YP_006349717.1| - 0.57 9.9 1.6 1.3 8.7 1.1 1.5 1 0 0 1 1 1 0 Microfibril-associated glycoprotein (MAGP) DUF58 PF01882.13 gi|662859513|ref|YP_006349716.2| - 7.5e-18 64.4 0.1 1.9e-17 63.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 Metal_resist PF13801.1 gi|662859513|ref|YP_006349716.2| - 1.7 8.6 5.1 20 5.1 0.0 3.1 2 1 1 3 3 3 0 Heavy-metal resistance AAA_3 PF07726.6 gi|389847475|ref|YP_006349714.1| - 8.5e-59 196.8 0.1 1.4e-58 196.1 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|389847475|ref|YP_006349714.1| - 1.7e-13 50.4 0.0 2.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|389847475|ref|YP_006349714.1| - 8.2e-08 32.5 0.0 1.8e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|389847475|ref|YP_006349714.1| - 5.1e-06 25.5 0.2 0.028 13.2 0.0 2.5 2 1 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|389847475|ref|YP_006349714.1| - 8.9e-05 22.0 0.0 0.00079 18.9 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|389847475|ref|YP_006349714.1| - 0.0012 18.0 0.0 0.0092 15.1 0.0 2.2 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|389847475|ref|YP_006349714.1| - 0.0024 16.9 0.0 0.011 14.8 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|389847475|ref|YP_006349714.1| - 0.065 13.3 0.0 0.49 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain POR PF01558.13 gi|389847475|ref|YP_006349714.1| - 0.094 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase AAA_2 PF07724.9 gi|389847475|ref|YP_006349714.1| - 0.11 12.3 0.0 0.38 10.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MutS_V PF00488.16 gi|662859512|ref|YP_006349713.2| - 3.2e-90 301.6 0.0 5.9e-90 300.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|662859512|ref|YP_006349713.2| - 9.3e-45 152.9 4.9 2e-44 151.8 3.4 1.6 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|662859512|ref|YP_006349713.2| - 1.7e-34 118.2 0.0 3.4e-34 117.2 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|662859512|ref|YP_006349713.2| - 1.1e-30 105.6 0.2 2.4e-30 104.5 0.0 1.8 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|662859512|ref|YP_006349713.2| - 8.7e-12 45.2 0.0 2.9e-11 43.6 0.0 2.0 1 1 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|662859512|ref|YP_006349713.2| - 0.0045 16.4 0.0 0.012 15.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|662859512|ref|YP_006349713.2| - 0.017 14.5 4.7 0.087 12.2 0.0 3.4 3 1 1 4 4 4 0 AAA domain AAA_14 PF13173.1 gi|662859512|ref|YP_006349713.2| - 0.15 11.9 0.0 0.41 10.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|662859512|ref|YP_006349713.2| - 0.31 11.3 0.0 0.72 10.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MutL_C PF08676.6 gi|389847473|ref|YP_006349712.1| - 1e-32 112.7 0.0 1.5e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|389847473|ref|YP_006349712.1| - 1.8e-28 98.3 0.0 2.8e-28 97.7 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|389847473|ref|YP_006349712.1| - 1.4e-13 50.6 0.0 2.5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|389847473|ref|YP_006349712.1| - 4.6e-10 39.1 0.3 9e-10 38.2 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nudix_N_2 PF14803.1 gi|389847472|ref|YP_006349711.1| - 0.0015 18.1 2.4 0.0033 17.0 1.6 1.6 1 0 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|389847472|ref|YP_006349711.1| - 0.0017 18.0 1.2 0.0038 17.0 0.9 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|389847472|ref|YP_006349711.1| - 0.012 15.5 0.7 0.13 12.1 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|389847472|ref|YP_006349711.1| - 0.079 12.6 0.4 0.11 12.1 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-dskA_traR PF01258.12 gi|389847472|ref|YP_006349711.1| - 0.26 11.0 2.3 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Upf2 PF04050.9 gi|389847472|ref|YP_006349711.1| - 0.48 10.1 4.2 0.52 10.0 2.9 1.1 1 0 0 1 1 1 0 Up-frameshift suppressor 2 DUF1510 PF07423.6 gi|389847472|ref|YP_006349711.1| - 0.5 9.6 4.6 0.59 9.4 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Nop14 PF04147.7 gi|389847472|ref|YP_006349711.1| - 2.9 5.6 9.4 2.9 5.6 6.5 1.0 1 0 0 1 1 1 0 Nop14-like family Daxx PF03344.10 gi|389847472|ref|YP_006349711.1| - 3.6 5.9 6.4 3.8 5.8 4.5 1.0 1 0 0 1 1 1 0 Daxx Family DNA_pol_phi PF04931.8 gi|389847472|ref|YP_006349711.1| - 4.3 4.9 10.7 3.9 5.1 7.4 1.0 1 0 0 1 1 1 0 DNA polymerase phi ABC2_membrane_3 PF12698.2 gi|389847471|ref|YP_006349710.1| - 0.2 10.6 5.5 0.24 10.3 3.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SUR7 PF06687.7 gi|389847471|ref|YP_006349710.1| - 1.1 8.7 4.8 1.3 8.5 3.4 1.0 1 0 0 1 1 1 0 SUR7/PalI family Bac_luciferase PF00296.15 gi|389847470|ref|YP_006349709.1| - 1.3e-59 201.8 4.1 1.7e-59 201.4 2.8 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase F420_ligase PF01996.11 gi|662859511|ref|YP_006349708.2| - 4.7e-67 225.3 0.0 5.4e-67 225.1 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Metallophos_2 PF12850.2 gi|389847467|ref|YP_006349706.1| - 1.5e-21 76.8 0.2 1.7e-21 76.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain IF-2B PF01008.12 gi|389847466|ref|YP_006349705.1| - 2.4e-44 151.4 0.1 3.9e-44 150.7 0.1 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|389847466|ref|YP_006349705.1| - 3e-13 49.5 1.1 5.8e-13 48.6 0.6 1.6 1 1 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|389847466|ref|YP_006349705.1| - 0.00058 19.2 0.0 0.0013 18.1 0.0 1.6 1 0 0 1 1 1 1 NUDIX domain Response_reg PF00072.19 gi|389847466|ref|YP_006349705.1| - 0.064 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Response regulator receiver domain DUF3179 PF11376.3 gi|389847465|ref|YP_006349704.1| - 7.1e-46 156.5 0.0 5.6e-28 97.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3179) B_lectin PF01453.19 gi|389847465|ref|YP_006349704.1| - 0.12 12.2 0.2 0.3 10.9 0.1 1.6 1 1 0 1 1 1 0 D-mannose binding lectin 2-Hacid_dh_C PF02826.14 gi|389847464|ref|YP_006349703.1| - 3.5e-52 176.1 0.0 4.5e-52 175.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|389847464|ref|YP_006349703.1| - 1.7e-05 24.3 0.1 2.2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|389847464|ref|YP_006349703.1| - 0.00046 20.5 0.0 0.00088 19.6 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|389847464|ref|YP_006349703.1| - 0.00055 19.8 0.0 0.0013 18.6 0.0 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.1 gi|389847464|ref|YP_006349703.1| - 0.00099 19.1 0.8 0.0015 18.5 0.6 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|389847464|ref|YP_006349703.1| - 0.006 16.4 0.1 0.0088 15.8 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|389847464|ref|YP_006349703.1| - 0.016 15.1 0.3 0.048 13.6 0.2 1.8 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|389847464|ref|YP_006349703.1| - 0.027 14.1 0.1 0.04 13.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|389847464|ref|YP_006349703.1| - 0.032 14.4 0.0 0.066 13.4 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|389847464|ref|YP_006349703.1| - 0.047 13.0 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain MMR_HSR1 PF01926.18 gi|389847463|ref|YP_006349702.1| - 1.1e-19 70.4 0.0 1.5e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|389847463|ref|YP_006349702.1| - 3.9e-13 48.9 0.4 6.8e-12 44.9 0.3 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|389847463|ref|YP_006349702.1| - 2.2e-06 27.2 0.4 0.0017 17.8 0.0 2.4 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|389847463|ref|YP_006349702.1| - 1.5e-05 24.1 0.1 3.2e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 AIG1 family AAA_18 PF13238.1 gi|389847463|ref|YP_006349702.1| - 0.00027 21.2 0.0 0.00044 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|389847463|ref|YP_006349702.1| - 0.00048 19.3 0.0 0.00079 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|389847463|ref|YP_006349702.1| - 0.00058 19.7 0.3 0.015 15.1 0.1 2.1 1 1 1 2 2 2 1 Dynamin family AAA_17 PF13207.1 gi|389847463|ref|YP_006349702.1| - 0.0021 18.8 0.2 0.008 16.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|389847463|ref|YP_006349702.1| - 0.0047 17.2 0.1 0.0066 16.7 0.1 1.5 1 1 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|389847463|ref|YP_006349702.1| - 0.0084 16.6 0.3 0.035 14.5 0.2 2.0 1 1 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|389847463|ref|YP_006349702.1| - 0.022 14.4 0.3 0.048 13.3 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.5 gi|389847463|ref|YP_006349702.1| - 0.028 13.6 0.3 0.059 12.5 0.2 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_15 PF13175.1 gi|389847463|ref|YP_006349702.1| - 0.04 12.9 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Ras PF00071.17 gi|389847463|ref|YP_006349702.1| - 0.042 13.2 0.2 0.094 12.0 0.0 1.7 2 0 0 2 2 2 0 Ras family AAA_29 PF13555.1 gi|389847463|ref|YP_006349702.1| - 0.049 13.1 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|389847463|ref|YP_006349702.1| - 0.05 13.7 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|389847463|ref|YP_006349702.1| - 0.053 13.6 0.1 0.13 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|389847463|ref|YP_006349702.1| - 0.059 12.0 0.2 0.099 11.3 0.1 1.3 1 0 0 1 1 1 0 TIP49 C-terminus DUF2730 PF10805.3 gi|389847463|ref|YP_006349702.1| - 0.06 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Septin PF00735.13 gi|389847463|ref|YP_006349702.1| - 0.07 12.1 0.3 0.44 9.5 0.2 2.0 1 1 0 1 1 1 0 Septin ATP_bind_1 PF03029.12 gi|389847463|ref|YP_006349702.1| - 0.075 12.5 2.5 0.72 9.3 0.1 2.6 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|389847463|ref|YP_006349702.1| - 0.087 12.3 0.1 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|389847463|ref|YP_006349702.1| - 0.11 12.2 0.1 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|389847463|ref|YP_006349702.1| - 0.11 11.8 0.8 1 8.7 0.0 2.2 1 1 2 3 3 3 0 AAA domain Acetyltransf_1 PF00583.19 gi|389847462|ref|YP_006349701.1| - 5.4e-10 39.1 0.0 9.2e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847462|ref|YP_006349701.1| - 5.7e-09 36.1 0.1 6.8e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847462|ref|YP_006349701.1| - 4.6e-08 33.1 0.0 6.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847462|ref|YP_006349701.1| - 0.00028 20.5 0.0 0.00043 19.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|389847462|ref|YP_006349701.1| - 0.0039 17.0 0.1 0.056 13.3 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|389847462|ref|YP_006349701.1| - 0.0085 16.0 0.4 0.011 15.6 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain 5-FTHF_cyc-lig PF01812.15 gi|389847461|ref|YP_006349700.1| - 1.8e-29 102.8 0.0 2.1e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF389 PF04087.9 gi|389847460|ref|YP_006349699.1| - 3.9e-36 124.0 17.5 3.9e-36 124.0 12.1 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF1700 PF08006.6 gi|389847460|ref|YP_006349699.1| - 0.37 10.0 0.0 0.37 10.0 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1700) SIMPL PF04402.9 gi|389847459|ref|YP_006349698.1| - 7.7e-44 150.0 7.7 8.9e-44 149.8 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) LPAM_1 PF08139.7 gi|389847459|ref|YP_006349698.1| - 0.26 11.5 0.8 0.42 10.9 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site NOG1 PF06858.9 gi|389847458|ref|YP_006349697.1| - 1.9e-20 72.4 0.0 4.9e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|389847458|ref|YP_006349697.1| - 4.2e-19 68.6 0.0 7.7e-19 67.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|389847458|ref|YP_006349697.1| - 1.3e-11 44.0 0.0 2.2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|389847458|ref|YP_006349697.1| - 3.6e-06 27.4 0.0 7.5e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|389847458|ref|YP_006349697.1| - 0.00021 21.1 0.7 0.21 11.4 0.0 3.0 2 2 1 3 3 3 2 Dynamin family AIG1 PF04548.11 gi|389847458|ref|YP_006349697.1| - 0.00039 19.6 0.0 0.0006 18.9 0.0 1.3 1 0 0 1 1 1 1 AIG1 family OmpH PF03938.9 gi|389847458|ref|YP_006349697.1| - 0.0011 18.8 1.8 0.13 12.1 0.2 2.4 2 0 0 2 2 2 1 Outer membrane protein (OmpH-like) SRPRB PF09439.5 gi|389847458|ref|YP_006349697.1| - 0.0014 17.8 0.0 0.0037 16.5 0.0 1.7 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|389847458|ref|YP_006349697.1| - 0.016 14.4 0.0 0.059 12.6 0.0 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family Myosin_tail_1 PF01576.14 gi|389847458|ref|YP_006349697.1| - 0.039 11.6 2.2 0.052 11.2 1.5 1.1 1 0 0 1 1 1 0 Myosin tail Ras PF00071.17 gi|389847458|ref|YP_006349697.1| - 0.043 13.2 0.0 0.43 9.9 0.0 2.5 2 1 0 2 2 2 0 Ras family AAA_17 PF13207.1 gi|389847458|ref|YP_006349697.1| - 0.049 14.4 0.5 3 8.6 0.0 2.6 2 2 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|389847458|ref|YP_006349697.1| - 0.056 12.8 0.0 3.9 6.8 0.0 2.7 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|389847458|ref|YP_006349697.1| - 0.064 13.2 0.0 0.29 11.0 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|389847458|ref|YP_006349697.1| - 0.077 12.1 0.0 0.22 10.7 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|389847458|ref|YP_006349697.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4174 PF13778.1 gi|389847458|ref|YP_006349697.1| - 0.22 11.6 2.0 0.27 11.3 0.0 2.1 3 0 0 3 3 2 0 Domain of unknown function (DUF4174) DUF367 PF04034.8 gi|389847456|ref|YP_006349695.1| - 1.5e-47 160.4 0.0 1.9e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|389847456|ref|YP_006349695.1| - 1e-09 37.8 0.0 1.7e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.10 gi|389847456|ref|YP_006349695.1| - 0.087 12.0 0.0 0.81 8.8 0.0 2.0 1 1 0 1 1 1 0 DTW domain SnoaL_2 PF12680.2 gi|389847455|ref|YP_006349694.1| - 2.7e-10 40.5 0.6 3.2e-10 40.3 0.4 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|389847455|ref|YP_006349694.1| - 0.0024 18.0 0.1 0.0029 17.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|389847455|ref|YP_006349694.1| - 0.0086 15.9 0.2 0.01 15.7 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|389847455|ref|YP_006349694.1| - 0.1 12.9 0.1 0.16 12.3 0.1 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain tRNA-synt_2b PF00587.20 gi|389847454|ref|YP_006349693.1| - 1.1e-32 113.0 0.0 1.7e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|389847454|ref|YP_006349693.1| - 1.1e-30 105.8 4.7 1.8e-30 105.1 3.3 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Mnd1 PF03962.10 gi|389847454|ref|YP_006349693.1| - 0.035 13.7 3.0 0.06 12.9 2.1 1.3 1 0 0 1 1 1 0 Mnd1 family DUF904 PF06005.7 gi|389847454|ref|YP_006349693.1| - 0.07 13.4 7.9 2.5 8.4 1.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF904) DUF342 PF03961.8 gi|389847454|ref|YP_006349693.1| - 0.073 11.4 1.5 0.1 10.9 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) GreA_GreB_N PF03449.10 gi|389847454|ref|YP_006349693.1| - 0.1 12.6 9.1 0.31 11.1 6.3 1.8 1 1 0 1 1 1 0 Transcription elongation factor, N-terminal bZIP_1 PF00170.16 gi|389847454|ref|YP_006349693.1| - 0.11 12.4 3.3 3.7 7.5 0.7 2.4 2 0 0 2 2 2 0 bZIP transcription factor PhnA_Zn_Ribbon PF08274.7 gi|389847454|ref|YP_006349693.1| - 0.18 11.6 0.1 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon TPR_MLP1_2 PF07926.7 gi|389847454|ref|YP_006349693.1| - 0.2 11.3 4.7 0.38 10.4 3.3 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein APG6 PF04111.7 gi|389847454|ref|YP_006349693.1| - 0.2 10.6 3.2 0.32 9.9 2.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 OmpH PF03938.9 gi|389847454|ref|YP_006349693.1| - 0.21 11.5 1.8 0.42 10.5 1.2 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) IncA PF04156.9 gi|389847454|ref|YP_006349693.1| - 0.23 11.0 2.5 0.45 10.0 1.7 1.5 1 0 0 1 1 1 0 IncA protein DUF1771 PF08590.5 gi|389847454|ref|YP_006349693.1| - 0.32 11.0 4.2 0.86 9.6 0.7 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) FUSC PF04632.7 gi|389847454|ref|YP_006349693.1| - 0.46 8.8 0.8 0.74 8.1 0.5 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family ABC2_membrane_2 PF12679.2 gi|389847453|ref|YP_006349692.1| - 4e-36 124.3 22.6 1.2e-18 66.9 4.2 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389847453|ref|YP_006349692.1| - 1.5e-17 63.5 26.4 1.1e-09 37.7 2.6 2.6 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389847453|ref|YP_006349692.1| - 0.0023 17.0 25.5 0.033 13.2 8.7 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389847453|ref|YP_006349692.1| - 0.3 10.3 16.1 0.011 14.9 3.3 3.3 3 1 0 3 3 3 0 ABC-2 family transporter protein DUF4632 PF15451.1 gi|389847453|ref|YP_006349692.1| - 0.45 10.4 1.5 0.86 9.5 1.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4632) ABC_tran PF00005.22 gi|389847452|ref|YP_006349691.1| - 3.5e-28 98.6 0.0 7e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847452|ref|YP_006349691.1| - 2.4e-11 44.1 0.0 2e-06 27.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|389847452|ref|YP_006349691.1| - 0.00066 19.2 0.0 0.32 10.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF4162 PF13732.1 gi|389847452|ref|YP_006349691.1| - 0.0022 18.4 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MobB PF03205.9 gi|389847452|ref|YP_006349691.1| - 0.0027 17.4 0.1 1.7 8.3 0.0 2.3 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|389847452|ref|YP_006349691.1| - 0.0037 16.0 0.0 0.0063 15.3 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|389847452|ref|YP_006349691.1| - 0.0077 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389847452|ref|YP_006349691.1| - 0.027 14.7 0.0 0.041 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|389847452|ref|YP_006349691.1| - 0.046 12.9 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|389847452|ref|YP_006349691.1| - 0.056 13.4 0.1 0.11 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|389847452|ref|YP_006349691.1| - 0.071 12.3 0.0 8.9 5.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|389847452|ref|YP_006349691.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|389847452|ref|YP_006349691.1| - 0.12 12.2 0.0 0.8 9.6 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|389847452|ref|YP_006349691.1| - 0.16 11.3 1.3 4.3 6.6 0.9 2.7 1 1 0 1 1 1 0 AAA domain Lactamase_B PF00753.22 gi|389847451|ref|YP_006349690.1| - 3.7e-25 88.7 11.9 5.9e-25 88.0 8.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|389847451|ref|YP_006349690.1| - 0.017 14.6 1.0 0.023 14.2 0.7 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|389847450|ref|YP_006349689.1| - 1.6e-92 310.1 0.0 1.8e-92 309.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Na_H_Exchanger PF00999.16 gi|389847449|ref|YP_006349688.1| - 1e-34 119.6 42.6 1.4e-34 119.2 29.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|389847449|ref|YP_006349688.1| - 8.3e-31 106.3 0.5 2.1e-30 105.1 0.3 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|389847449|ref|YP_006349688.1| - 9e-14 50.8 2.1 1.3e-13 50.3 0.3 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|389847449|ref|YP_006349688.1| - 3.5e-08 33.6 0.1 1.1e-07 32.0 0.1 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|389847449|ref|YP_006349688.1| - 4.4e-06 26.8 0.9 1.3e-05 25.2 0.6 1.8 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|389847449|ref|YP_006349688.1| - 7.3e-06 26.3 3.7 0.00052 20.3 0.2 3.4 2 1 1 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|389847449|ref|YP_006349688.1| - 1.1e-05 24.5 0.1 1.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|389847449|ref|YP_006349688.1| - 0.00041 19.8 0.2 0.0013 18.2 0.1 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|389847449|ref|YP_006349688.1| - 0.00042 19.4 0.6 0.00077 18.6 0.3 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|389847449|ref|YP_006349688.1| - 0.0016 18.2 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|389847449|ref|YP_006349688.1| - 0.0016 17.4 0.7 0.003 16.6 0.5 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox_2 PF07992.9 gi|389847449|ref|YP_006349688.1| - 0.0053 16.6 0.1 0.021 14.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|389847449|ref|YP_006349688.1| - 0.0056 16.0 0.1 0.011 15.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|389847449|ref|YP_006349688.1| - 0.0074 15.9 0.5 0.0074 15.9 0.3 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|389847449|ref|YP_006349688.1| - 0.0079 15.5 0.1 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DFP PF04127.10 gi|389847449|ref|YP_006349688.1| - 0.0085 15.7 0.1 0.015 14.8 0.1 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein XdhC_C PF13478.1 gi|389847449|ref|YP_006349688.1| - 0.01 16.1 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Epimerase PF01370.16 gi|389847449|ref|YP_006349688.1| - 0.01 15.2 0.5 0.017 14.5 0.4 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.22 gi|389847449|ref|YP_006349688.1| - 0.012 16.0 2.6 0.019 15.3 0.2 2.6 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|389847449|ref|YP_006349688.1| - 0.02 14.7 0.2 0.053 13.3 0.1 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|389847449|ref|YP_006349688.1| - 0.025 13.7 0.1 0.061 12.4 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|389847449|ref|YP_006349688.1| - 0.029 14.4 0.1 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|389847449|ref|YP_006349688.1| - 0.031 13.1 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|389847449|ref|YP_006349688.1| - 0.038 14.0 0.1 0.1 12.6 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain CbiJ PF02571.9 gi|389847449|ref|YP_006349688.1| - 0.056 12.7 0.3 0.1 11.9 0.2 1.5 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK NmrA PF05368.8 gi|389847449|ref|YP_006349688.1| - 1.3 8.2 5.3 0.53 9.5 0.5 2.4 2 1 1 3 3 3 0 NmrA-like family AFOR_C PF01314.13 gi|389847448|ref|YP_006349687.1| - 7.8e-81 271.6 1.1 4.3e-80 269.2 0.7 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|389847448|ref|YP_006349687.1| - 8.8e-55 185.1 0.0 1.4e-54 184.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thiolase_N PF00108.18 gi|389847446|ref|YP_006349685.1| - 1e-77 260.7 0.2 1.6e-77 260.0 0.2 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|389847446|ref|YP_006349685.1| - 7e-43 144.9 0.0 1.3e-42 144.1 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|389847446|ref|YP_006349685.1| - 0.00024 20.6 0.1 0.00057 19.4 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|389847446|ref|YP_006349685.1| - 0.00093 18.8 1.7 0.85 9.3 0.0 3.1 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|389847446|ref|YP_006349685.1| - 0.011 15.6 0.0 0.031 14.3 0.0 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF4646 PF15496.1 gi|389847446|ref|YP_006349685.1| - 0.013 15.5 0.4 0.48 10.4 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4646) PDT PF00800.13 gi|389847446|ref|YP_006349685.1| - 0.061 12.8 0.1 9.8 5.6 0.0 2.9 3 0 0 3 3 3 0 Prephenate dehydratase NIR_SIR PF01077.17 gi|389847445|ref|YP_006349684.1| - 1.4e-45 154.4 0.0 3e-30 104.6 0.0 2.2 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|389847445|ref|YP_006349684.1| - 3.6e-36 122.6 0.1 3.9e-17 61.6 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain NTP_transf_3 PF12804.2 gi|389847444|ref|YP_006349683.1| - 2.9e-31 108.7 0.1 3.5e-31 108.4 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|389847444|ref|YP_006349683.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.4 2 0 0 2 2 2 0 Cytidylyltransferase MFS_1 PF07690.11 gi|389847443|ref|YP_006349682.1| - 7.9e-33 113.6 77.6 6e-32 110.7 36.9 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3154 PF11351.3 gi|389847443|ref|YP_006349682.1| - 1.3 8.7 5.8 2.7 7.7 0.8 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF3154) Molybdopterin PF00384.17 gi|662859510|ref|YP_006349681.2| - 1.9e-55 188.3 0.0 2.4e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|662859510|ref|YP_006349681.2| - 8.2e-13 48.1 0.1 2.2e-12 46.7 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|662859510|ref|YP_006349681.2| - 4e-08 32.9 1.9 8.8e-08 31.8 1.3 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain AAA PF00004.24 gi|389847441|ref|YP_006349680.1| - 3.9e-40 137.1 0.0 8.1e-40 136.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|389847441|ref|YP_006349680.1| - 3.2e-09 37.6 1.9 1.4e-08 35.5 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|389847441|ref|YP_006349680.1| - 1.2e-06 28.2 0.0 6.9e-06 25.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|389847441|ref|YP_006349680.1| - 1.9e-06 28.2 1.0 1.7e-05 25.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|389847441|ref|YP_006349680.1| - 4.9e-06 26.4 0.0 1.2e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|389847441|ref|YP_006349680.1| - 7.5e-06 26.0 0.2 3.3e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|389847441|ref|YP_006349680.1| - 2.7e-05 24.3 1.4 0.0024 18.0 0.4 3.0 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|389847441|ref|YP_006349680.1| - 3.7e-05 22.8 0.1 0.00013 21.1 0.0 1.9 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|389847441|ref|YP_006349680.1| - 6.1e-05 23.0 6.1 0.0016 18.4 0.0 3.6 1 1 2 4 4 4 1 AAA ATPase domain AAA_2 PF07724.9 gi|389847441|ref|YP_006349680.1| - 0.00016 21.6 0.0 0.00043 20.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|389847441|ref|YP_006349680.1| - 0.00084 18.3 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|389847441|ref|YP_006349680.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SKI PF01202.17 gi|389847441|ref|YP_006349680.1| - 0.0015 18.4 0.1 0.0048 16.7 0.0 1.9 2 0 0 2 2 2 1 Shikimate kinase TIP49 PF06068.8 gi|389847441|ref|YP_006349680.1| - 0.0017 17.1 0.0 0.0036 16.0 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_25 PF13481.1 gi|389847441|ref|YP_006349680.1| - 0.0017 17.7 0.5 0.023 14.0 0.0 2.9 2 1 2 4 4 4 1 AAA domain AAA_19 PF13245.1 gi|389847441|ref|YP_006349680.1| - 0.0032 17.1 0.0 0.0076 15.9 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|389847441|ref|YP_006349680.1| - 0.0043 16.9 0.0 0.01 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|389847441|ref|YP_006349680.1| - 0.0052 16.7 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|389847441|ref|YP_006349680.1| - 0.0074 16.3 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|389847441|ref|YP_006349680.1| - 0.0097 15.3 0.1 0.027 13.9 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|389847441|ref|YP_006349680.1| - 0.011 15.8 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|389847441|ref|YP_006349680.1| - 0.015 14.9 0.0 4.4 6.9 0.0 2.5 1 1 1 2 2 2 0 NACHT domain AAA_3 PF07726.6 gi|389847441|ref|YP_006349680.1| - 0.021 14.4 0.0 0.053 13.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|389847441|ref|YP_006349680.1| - 0.035 13.6 0.0 0.053 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|389847441|ref|YP_006349680.1| - 0.037 13.1 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|389847441|ref|YP_006349680.1| - 0.038 14.2 0.0 0.099 12.9 0.0 1.8 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|389847441|ref|YP_006349680.1| - 0.045 13.4 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.10 gi|389847441|ref|YP_006349680.1| - 0.05 12.2 0.0 0.072 11.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|389847441|ref|YP_006349680.1| - 0.071 12.2 0.0 0.18 10.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ResIII PF04851.10 gi|389847441|ref|YP_006349680.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SRP54 PF00448.17 gi|389847441|ref|YP_006349680.1| - 0.098 12.0 0.9 0.34 10.3 0.0 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain MSP1_C PF07462.6 gi|389847440|ref|YP_006349679.1| - 0.042 12.2 4.0 0.055 11.8 2.8 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus TAT_signal PF10518.4 gi|389847440|ref|YP_006349679.1| - 0.14 12.2 0.6 0.33 11.0 0.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B_2 PF12706.2 gi|389847439|ref|YP_006349678.1| - 1.9e-14 53.6 0.2 2.9e-14 53.0 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|389847439|ref|YP_006349678.1| - 7e-05 22.5 6.1 9.7e-05 22.0 4.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3021 PF11457.3 gi|662859509|ref|YP_006349676.2| - 0.082 12.7 0.2 0.091 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) GtrA PF04138.9 gi|662859509|ref|YP_006349676.2| - 0.32 10.9 3.8 0.65 9.9 2.7 1.4 1 1 0 1 1 1 0 GtrA-like protein SBP_bac_5 PF00496.17 gi|389847436|ref|YP_006349675.1| - 4.4e-87 292.3 0.1 5.6e-87 292.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Myco_19_kDa PF05481.7 gi|389847434|ref|YP_006349673.1| - 0.055 13.2 0.4 3.6 7.3 0.1 2.5 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen GTP_EFTU PF00009.22 gi|389847433|ref|YP_006349672.1| - 3.7e-40 137.3 0.2 5.6e-40 136.7 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|389847433|ref|YP_006349672.1| - 7.2e-27 93.2 0.0 1.4e-26 92.3 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|389847433|ref|YP_006349672.1| - 1.4e-09 37.9 1.3 3.7e-09 36.5 0.9 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|389847433|ref|YP_006349672.1| - 0.0021 17.5 0.6 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|389847433|ref|YP_006349672.1| - 0.003 17.4 0.0 0.006 16.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|389847433|ref|YP_006349672.1| - 0.015 14.4 0.0 1 8.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|389847433|ref|YP_006349672.1| - 0.028 13.7 1.4 2.1 7.5 0.0 2.5 1 1 1 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|389847433|ref|YP_006349672.1| - 0.12 12.9 0.0 0.37 11.2 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein Fcf1 PF04900.7 gi|662859507|ref|YP_006349671.2| - 7e-08 32.4 0.0 9.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|662859507|ref|YP_006349671.2| - 4.4e-06 26.8 0.0 3.2e-05 24.0 0.0 1.9 1 1 1 2 2 2 1 PIN domain DUF188 PF02639.9 gi|662859507|ref|YP_006349671.2| - 2e-05 24.0 0.4 3.5e-05 23.2 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.1 gi|662859507|ref|YP_006349671.2| - 0.013 16.1 4.1 0.084 13.5 2.8 2.0 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.1 gi|662859507|ref|YP_006349671.2| - 0.12 12.0 0.1 3.3 7.4 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) SHS2_Rpb7-N PF03876.12 gi|389847431|ref|YP_006349670.1| - 2.7e-15 56.2 0.1 4.7e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|389847431|ref|YP_006349670.1| - 3.5e-13 49.4 0.3 8e-13 48.2 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|389847431|ref|YP_006349670.1| - 0.085 12.7 0.0 3.6 7.5 0.0 2.5 1 1 0 1 1 1 0 S1 domain Spt4 PF06093.8 gi|389847430|ref|YP_006349669.1| - 3.7e-15 55.5 0.1 4.5e-15 55.3 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|389847430|ref|YP_006349669.1| - 0.00041 20.0 3.2 0.00056 19.6 2.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|389847430|ref|YP_006349669.1| - 0.0099 15.6 0.2 0.011 15.5 0.1 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-RanBP PF00641.13 gi|389847430|ref|YP_006349669.1| - 0.073 12.1 4.3 0.1 11.7 3.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Cytochrom_c3_2 PF14537.1 gi|389847430|ref|YP_006349669.1| - 0.14 12.5 2.9 0.22 11.9 2.0 1.3 1 0 0 1 1 1 0 Cytochrome c3 HypA PF01155.14 gi|389847430|ref|YP_006349669.1| - 0.15 11.7 0.6 0.17 11.5 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|389847430|ref|YP_006349669.1| - 0.19 11.4 2.9 2.3 7.9 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|389847430|ref|YP_006349669.1| - 0.21 11.6 1.5 14 5.8 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|389847430|ref|YP_006349669.1| - 0.24 10.6 3.6 0.59 9.4 0.3 1.7 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|389847430|ref|YP_006349669.1| - 0.3 10.4 0.3 0.3 10.4 0.2 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|389847430|ref|YP_006349669.1| - 0.97 9.2 4.7 2 8.2 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|389847430|ref|YP_006349669.1| - 1.9 8.0 4.1 17 4.9 0.4 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|389847430|ref|YP_006349669.1| - 3.8 7.5 5.1 18 5.3 3.5 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DUF359 PF04019.7 gi|389847429|ref|YP_006349668.1| - 5.1e-40 135.6 0.0 6.4e-40 135.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) ABM PF03992.11 gi|389847429|ref|YP_006349668.1| - 0.13 12.3 0.1 0.78 9.8 0.0 2.1 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase Ribosomal_S24e PF01282.14 gi|389847428|ref|YP_006349667.1| - 1.5e-28 98.3 0.7 1.8e-28 98.1 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e hNIFK_binding PF12196.3 gi|389847428|ref|YP_006349667.1| - 0.12 11.7 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK Peptidase_M22 PF00814.20 gi|389847427|ref|YP_006349666.1| - 2e-72 243.8 0.0 3e-72 243.3 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|389847427|ref|YP_006349666.1| - 2.4e-05 23.4 0.0 6.4e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|389847427|ref|YP_006349666.1| - 0.0055 16.4 6.2 0.034 13.8 4.3 2.2 1 1 0 1 1 1 1 Phosphotransferase enzyme family Ham1p_like PF01725.11 gi|662859505|ref|YP_006349664.2| - 1.9e-44 151.2 0.0 5.8e-44 149.7 0.0 1.6 1 1 0 1 1 1 1 Ham1 family PIN_3 PF13470.1 gi|389847424|ref|YP_006349663.1| - 1.4e-06 28.9 1.9 3.2e-06 27.8 1.3 1.6 1 1 0 1 1 1 1 PIN domain PBP_like_2 PF12849.2 gi|389847423|ref|YP_006349662.1| - 1.1e-26 93.9 3.0 1.1e-26 93.9 2.1 1.4 2 0 0 2 2 2 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|389847423|ref|YP_006349662.1| - 5.4e-12 45.8 0.0 8e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|389847423|ref|YP_006349662.1| - 0.00053 18.9 0.0 0.001 18.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|389847423|ref|YP_006349662.1| - 0.017 15.0 1.0 0.14 12.2 0.1 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence LysR_substrate PF03466.15 gi|389847423|ref|YP_006349662.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.17 gi|389847422|ref|YP_006349661.1| - 6.1e-11 42.1 12.8 6.1e-11 42.1 8.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|389847421|ref|YP_006349660.1| - 3.6e-32 111.5 0.0 5.5e-32 110.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847421|ref|YP_006349660.1| - 3.6e-10 40.3 0.0 2.8e-05 24.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|389847421|ref|YP_006349660.1| - 1.6e-06 28.2 0.5 2.4e-06 27.6 0.3 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|389847421|ref|YP_006349660.1| - 0.00018 21.3 0.5 0.00066 19.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|389847421|ref|YP_006349660.1| - 0.00025 21.1 0.0 0.00074 19.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|389847421|ref|YP_006349660.1| - 0.0004 20.0 0.0 0.0053 16.4 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|389847421|ref|YP_006349660.1| - 0.0007 19.4 0.1 0.0087 15.9 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|389847421|ref|YP_006349660.1| - 0.00085 19.0 2.8 0.032 13.9 0.1 3.0 2 1 1 3 3 3 1 Part of AAA domain AAA_30 PF13604.1 gi|389847421|ref|YP_006349660.1| - 0.00085 18.9 0.7 0.06 12.9 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|389847421|ref|YP_006349660.1| - 0.0012 18.3 0.1 0.92 8.8 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_17 PF13207.1 gi|389847421|ref|YP_006349660.1| - 0.0018 19.0 0.0 0.004 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|389847421|ref|YP_006349660.1| - 0.0032 16.9 1.8 0.026 13.9 1.3 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|389847421|ref|YP_006349660.1| - 0.007 16.5 0.0 0.062 13.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|389847421|ref|YP_006349660.1| - 0.0077 16.2 0.1 0.063 13.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|389847421|ref|YP_006349660.1| - 0.01 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|389847421|ref|YP_006349660.1| - 0.022 15.0 0.0 0.075 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|389847421|ref|YP_006349660.1| - 0.025 13.7 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389847421|ref|YP_006349660.1| - 0.027 13.9 0.2 0.096 12.2 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|389847421|ref|YP_006349660.1| - 0.048 12.5 0.1 0.28 10.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|389847421|ref|YP_006349660.1| - 0.098 12.3 0.0 0.51 9.9 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|389847421|ref|YP_006349660.1| - 0.099 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|389847421|ref|YP_006349660.1| - 0.11 11.6 0.0 0.35 9.9 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|389847421|ref|YP_006349660.1| - 0.11 12.2 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|389847421|ref|YP_006349660.1| - 0.11 12.8 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|389847421|ref|YP_006349660.1| - 0.17 11.4 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrkA_N PF02254.13 gi|662859504|ref|YP_006349659.2| - 4.7e-26 91.0 0.0 6.8e-26 90.5 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|662859504|ref|YP_006349659.2| - 1.7e-12 46.7 0.1 3.3e-12 45.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|662859504|ref|YP_006349659.2| - 5.1e-07 29.2 0.0 8e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|662859504|ref|YP_006349659.2| - 9.3e-06 25.8 0.0 1.3e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|662859504|ref|YP_006349659.2| - 0.00022 21.2 0.1 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|662859504|ref|YP_006349659.2| - 0.00054 19.1 0.1 0.00071 18.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|662859504|ref|YP_006349659.2| - 0.00059 19.0 0.0 0.0039 16.3 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|662859504|ref|YP_006349659.2| - 0.00071 18.9 0.5 0.0011 18.3 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|662859504|ref|YP_006349659.2| - 0.001 18.7 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|662859504|ref|YP_006349659.2| - 0.0011 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|662859504|ref|YP_006349659.2| - 0.003 17.4 0.0 0.0068 16.2 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|662859504|ref|YP_006349659.2| - 0.0043 16.0 0.1 0.0056 15.7 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|662859504|ref|YP_006349659.2| - 0.0067 16.8 0.6 0.015 15.7 0.2 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|662859504|ref|YP_006349659.2| - 0.013 15.7 0.0 0.024 14.9 0.0 1.5 2 0 0 2 2 1 0 XdhC Rossmann domain DAO PF01266.19 gi|662859504|ref|YP_006349659.2| - 0.021 13.7 0.0 0.049 12.5 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|662859504|ref|YP_006349659.2| - 0.042 13.6 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 ThiF family CPSase_L_chain PF00289.17 gi|662859504|ref|YP_006349659.2| - 0.045 13.8 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain GFO_IDH_MocA PF01408.17 gi|662859504|ref|YP_006349659.2| - 0.048 14.1 0.0 0.068 13.6 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.16 gi|662859504|ref|YP_006349659.2| - 0.074 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2238 PF09997.4 gi|389847419|ref|YP_006349658.1| - 0.00026 20.4 5.2 0.041 13.2 0.6 2.4 1 1 1 2 2 2 2 Predicted membrane protein (DUF2238) DUF4234 PF14018.1 gi|389847419|ref|YP_006349658.1| - 0.067 12.9 0.9 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) DUF457 PF04307.9 gi|662859503|ref|YP_006349657.2| - 9.9e-07 28.2 13.0 2e-06 27.2 9.0 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4149 PF13664.1 gi|662859503|ref|YP_006349657.2| - 6.2 6.9 8.5 0.38 10.8 2.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) FUSC_2 PF13515.1 gi|662859503|ref|YP_006349657.2| - 9.7 6.1 10.3 0.66 9.8 2.8 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein-like MFS_1 PF07690.11 gi|389847417|ref|YP_006349656.1| - 6.4e-52 176.4 70.5 4e-39 134.3 28.3 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|389847417|ref|YP_006349656.1| - 4.5e-09 35.2 18.3 3.8e-08 32.1 7.6 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein YvrJ PF12841.2 gi|389847417|ref|YP_006349656.1| - 0.32 10.3 0.0 0.32 10.3 0.0 2.7 4 0 0 4 4 4 0 YvrJ protein family DUF716 PF04819.7 gi|389847414|ref|YP_006349653.1| - 0.082 12.3 4.8 0.11 11.9 3.2 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF716) NADHdeh_related PF10125.4 gi|389847414|ref|YP_006349653.1| - 0.19 10.8 2.5 0.93 8.6 0.5 2.0 1 1 1 2 2 2 0 NADH dehydrogenase I, subunit N related protein Flavi_NS4A PF01350.12 gi|389847414|ref|YP_006349653.1| - 0.97 8.9 4.4 1.4 8.4 0.2 2.1 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A Tetraspannin PF00335.15 gi|389847414|ref|YP_006349653.1| - 1.4 8.1 4.1 1.6 7.9 2.9 1.4 1 0 0 1 1 1 0 Tetraspanin family Acetyltransf_3 PF13302.1 gi|389847413|ref|YP_006349652.1| - 9.5e-24 84.1 0.0 1.3e-23 83.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|389847413|ref|YP_006349652.1| - 8.7e-15 54.9 0.0 1.1e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847413|ref|YP_006349652.1| - 1.2e-09 38.1 0.0 1.9e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|389847413|ref|YP_006349652.1| - 1.9e-06 27.8 0.0 3.8e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847413|ref|YP_006349652.1| - 0.02 14.6 0.0 0.084 12.6 0.0 1.9 1 1 0 1 1 1 0 FR47-like protein Flavi_NS2B PF01002.14 gi|389847411|ref|YP_006349650.1| - 0.038 13.5 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 Flavivirus non-structural protein NS2B Phage_integrase PF00589.17 gi|662859502|ref|YP_006349648.2| - 2.9e-18 66.1 0.2 4.4e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|662859502|ref|YP_006349648.2| - 0.0093 16.2 0.2 0.0093 16.2 0.1 2.5 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain ECH PF00378.15 gi|389847407|ref|YP_006349646.1| - 5.1e-43 146.9 0.0 5.9e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|389847407|ref|YP_006349646.1| - 0.13 12.0 0.1 2.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S49 NAD_synthase PF02540.12 gi|389847406|ref|YP_006349645.1| - 6.3e-81 270.8 0.0 7.4e-81 270.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|389847406|ref|YP_006349645.1| - 2.1e-05 23.2 0.0 0.0042 15.6 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|389847406|ref|YP_006349645.1| - 0.00084 18.9 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.1 gi|389847406|ref|YP_006349645.1| - 0.022 14.4 0.0 0.34 10.6 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain QueC PF06508.8 gi|389847406|ref|YP_006349645.1| - 0.092 12.0 0.0 0.4 9.9 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC zinc_ribbon_2 PF13240.1 gi|389847404|ref|YP_006349643.1| - 0.00014 21.1 1.1 0.00024 20.4 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|389847404|ref|YP_006349643.1| - 0.00049 19.2 0.3 0.00049 19.2 0.2 1.9 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|389847404|ref|YP_006349643.1| - 0.00053 19.7 0.9 0.00072 19.3 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2973 PF11189.3 gi|389847404|ref|YP_006349643.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2973) TF_Zn_Ribbon PF08271.7 gi|389847404|ref|YP_006349643.1| - 0.43 9.9 4.4 0.18 11.1 0.5 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding zf-CCHC PF00098.18 gi|389847404|ref|YP_006349643.1| - 1.6 8.7 5.0 7.8 6.6 0.2 2.2 2 0 0 2 2 2 0 Zinc knuckle Hexapep PF00132.19 gi|389847403|ref|YP_006349642.1| - 5.8e-10 38.2 6.0 6.5e-06 25.4 0.8 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|389847403|ref|YP_006349642.1| - 9.8e-06 25.0 2.5 0.00046 19.6 0.1 2.8 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Aldo_ket_red PF00248.16 gi|389847402|ref|YP_006349641.1| - 7.2e-50 169.3 0.0 8.4e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Frankia_peptide PF14407.1 gi|389847402|ref|YP_006349641.1| - 0.091 12.5 5.1 0.14 11.9 0.2 3.3 3 1 1 4 4 4 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF839 PF05787.8 gi|389847400|ref|YP_006349639.1| - 9.2e-23 80.9 11.1 8.8e-20 71.1 5.5 3.3 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.4 gi|389847400|ref|YP_006349639.1| - 0.089 12.8 4.2 0.17 11.9 2.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SHOCT PF09851.4 gi|389847399|ref|YP_006349638.1| - 3.9e-08 32.5 0.8 3.9e-08 32.5 0.5 1.9 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.6 gi|389847399|ref|YP_006349638.1| - 0.0061 16.2 1.1 0.01 15.5 0.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) HemY_N PF07219.8 gi|389847399|ref|YP_006349638.1| - 0.083 12.4 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 HemY protein N-terminus GvpG PF05120.7 gi|389847399|ref|YP_006349638.1| - 0.1 12.4 2.1 0.17 11.6 1.5 1.4 1 0 0 1 1 1 0 Gas vesicle protein G UbiA PF01040.13 gi|389847399|ref|YP_006349638.1| - 0.2 10.8 5.7 0.27 10.4 4.0 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family Chlor_dismutase PF06778.7 gi|389847397|ref|YP_006349636.1| - 8.3e-57 192.0 0.1 1.3e-56 191.3 0.0 1.3 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|389847397|ref|YP_006349636.1| - 2.7e-10 40.1 0.1 2.7e-10 40.1 0.0 4.3 5 0 0 5 5 5 2 Antibiotic biosynthesis monooxygenase Peptidase_M50 PF02163.17 gi|662859501|ref|YP_006349635.2| - 1.1e-27 96.2 0.0 3.1e-27 94.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|662859501|ref|YP_006349635.2| - 2.6e-19 68.8 0.9 1.1e-07 31.6 0.0 3.3 2 1 1 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.1 gi|662859501|ref|YP_006349635.2| - 2.8e-07 30.2 0.6 0.00036 20.2 0.1 3.4 3 0 0 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|662859501|ref|YP_006349635.2| - 6.4e-07 29.4 0.3 2.4e-05 24.4 0.0 3.3 2 1 0 3 3 3 1 PDZ domain (Also known as DHR or GLGF) SpoIIIAH PF12685.2 gi|389847395|ref|YP_006349634.1| - 0.92 8.9 10.2 0.019 14.4 2.3 1.8 2 0 0 2 2 2 0 SpoIIIAH-like protein DUF3659 PF12396.3 gi|389847394|ref|YP_006349633.1| - 0.014 15.0 0.1 4.2 7.1 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) A2M_N PF01835.14 gi|389847393|ref|YP_006349632.1| - 0.11 12.7 0.3 0.35 11.1 0.1 2.1 1 1 1 2 2 2 0 MG2 domain Mitofilin PF09731.4 gi|389847393|ref|YP_006349632.1| - 2.4 6.6 4.1 5.1 5.6 2.9 1.6 1 1 0 1 1 1 0 Mitochondrial inner membrane protein tRNA-synt_1f PF01921.13 gi|389847392|ref|YP_006349631.1| - 8.8e-104 347.0 0.0 3.3e-103 345.1 0.0 1.7 1 1 1 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|389847392|ref|YP_006349631.1| - 1.5e-07 30.4 0.0 3.7e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|389847392|ref|YP_006349631.1| - 0.00021 20.5 0.0 0.014 14.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.23 gi|389847391|ref|YP_006349630.1| - 1.3e-27 96.8 4.6 1.6e-27 96.6 3.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Phosphonate-bd PF12974.2 gi|389847391|ref|YP_006349630.1| - 0.048 13.0 0.4 0.27 10.5 0.0 2.2 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MoaE PF02391.12 gi|389847390|ref|YP_006349629.1| - 1.2e-22 79.9 0.7 1.7e-22 79.3 0.5 1.2 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|389847390|ref|YP_006349629.1| - 5.2e-05 22.9 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|389847390|ref|YP_006349629.1| - 0.13 12.5 0.1 1.6 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Peptidase_M50 PF02163.17 gi|389847388|ref|YP_006349627.1| - 7.6e-18 64.1 3.5 1.5e-16 59.9 2.5 2.3 1 1 0 1 1 1 1 Peptidase family M50 AIRS PF00586.19 gi|389847387|ref|YP_006349626.1| - 1.8e-16 60.1 2.7 5.8e-16 58.5 1.9 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|389847387|ref|YP_006349626.1| - 2.3e-09 37.4 0.2 5.4e-09 36.2 0.1 1.6 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain UPF0104 PF03706.8 gi|389847386|ref|YP_006349625.1| - 7e-34 117.4 32.1 9.4e-34 117.0 22.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DPM3 PF08285.6 gi|389847386|ref|YP_006349625.1| - 0.06 13.2 0.7 0.19 11.5 0.5 1.8 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Ribosomal_S19e PF01090.14 gi|389847385|ref|YP_006349624.1| - 9.9e-45 151.4 0.0 1.1e-44 151.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|389847385|ref|YP_006349624.1| - 0.0021 17.7 0.1 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|389847385|ref|YP_006349624.1| - 0.0043 16.8 0.0 0.0068 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|389847385|ref|YP_006349624.1| - 0.0058 16.7 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|389847385|ref|YP_006349624.1| - 0.0061 15.9 0.2 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|389847385|ref|YP_006349624.1| - 0.047 13.3 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|389847385|ref|YP_006349624.1| - 0.089 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) dsDNA_bind PF01984.15 gi|389847384|ref|YP_006349623.1| - 1.8e-29 101.8 19.3 2.1e-29 101.6 13.4 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|389847384|ref|YP_006349623.1| - 0.028 14.7 0.7 0.093 13.0 0.5 1.9 1 1 0 1 1 1 0 PCI domain SR-25 PF10500.4 gi|389847384|ref|YP_006349623.1| - 1.2 8.5 10.6 1.6 8.1 7.3 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein HABP4_PAI-RBP1 PF04774.10 gi|389847384|ref|YP_006349623.1| - 1.2 9.6 9.1 2 8.9 6.3 1.3 1 0 0 1 1 1 0 Hyaluronan / mRNA binding family Mnd1 PF03962.10 gi|389847384|ref|YP_006349623.1| - 2.2 7.9 14.1 2.6 7.6 9.8 1.2 1 0 0 1 1 1 0 Mnd1 family PIN_3 PF13470.1 gi|389847384|ref|YP_006349623.1| - 2.6 8.7 4.6 31 5.2 0.0 2.1 1 1 1 2 2 2 0 PIN domain EF-1_beta_acid PF10587.4 gi|389847384|ref|YP_006349623.1| - 3.9 7.7 10.2 1.3 9.2 1.5 3.2 3 0 0 3 3 3 0 Eukaryotic elongation factor 1 beta central acidic region Hid1 PF12722.2 gi|389847384|ref|YP_006349623.1| - 8.2 3.9 8.4 8.9 3.8 5.8 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Asn_synthase PF00733.16 gi|389847383|ref|YP_006349622.1| - 0.0003 20.3 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|389847383|ref|YP_006349622.1| - 0.0037 17.1 0.0 0.0066 16.2 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|389847383|ref|YP_006349622.1| - 0.15 10.6 0.1 0.3 9.6 0.0 1.6 1 1 0 1 1 1 0 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|389847383|ref|YP_006349622.1| - 0.15 11.3 0.2 0.32 10.3 0.1 1.5 1 1 0 1 1 1 0 ATP-binding region EamA PF00892.15 gi|389847382|ref|YP_006349621.1| - 1.4e-20 73.5 23.7 1.8e-10 40.9 2.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389847382|ref|YP_006349621.1| - 0.00045 20.3 27.6 0.037 14.2 8.6 3.2 2 2 0 2 2 2 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|389847382|ref|YP_006349621.1| - 0.03 14.1 0.3 0.03 14.1 0.2 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0546 tRNA-synt_His PF13393.1 gi|389847381|ref|YP_006349620.1| - 6.2e-49 166.7 0.1 8.1e-49 166.3 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|389847381|ref|YP_006349620.1| - 6.6e-22 77.9 0.0 9.3e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|389847381|ref|YP_006349620.1| - 3.6e-15 55.6 0.0 7.1e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|389847381|ref|YP_006349620.1| - 0.0052 16.0 0.0 0.011 14.9 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Flavodoxin_1 PF00258.20 gi|389847381|ref|YP_006349620.1| - 0.019 14.9 0.2 0.078 12.9 0.0 2.0 2 0 0 2 2 2 0 Flavodoxin Usp PF00582.21 gi|389847380|ref|YP_006349619.1| - 1.8e-37 128.6 1.4 2.1e-37 128.4 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family SpoIIAA-like PF11964.3 gi|389847379|ref|YP_006349618.1| - 0.0026 18.0 0.0 0.0032 17.7 0.0 1.1 1 0 0 1 1 1 1 SpoIIAA-like DUF1794 PF08768.6 gi|389847379|ref|YP_006349618.1| - 0.036 13.9 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1794) PseudoU_synth_1 PF01416.15 gi|389847378|ref|YP_006349617.1| - 1.3e-20 73.7 0.0 6.4e-12 45.8 0.0 2.4 2 0 0 2 2 2 2 tRNA pseudouridine synthase HAD_2 PF13419.1 gi|389847377|ref|YP_006349616.1| - 8.8e-16 58.6 0.1 1.1e-15 58.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389847377|ref|YP_006349616.1| - 3e-11 42.8 0.0 5.3e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|389847377|ref|YP_006349616.1| - 8.1e-08 32.9 0.1 9.8e-07 29.3 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|389847377|ref|YP_006349616.1| - 0.003 17.7 0.1 0.0076 16.4 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Peptidase_M28 PF04389.12 gi|389847375|ref|YP_006349614.1| - 8.3e-26 90.8 0.4 1.3e-25 90.1 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|389847375|ref|YP_006349614.1| - 1.3e-08 34.4 0.1 5e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.9 gi|389847375|ref|YP_006349614.1| - 0.00056 18.7 0.1 0.001 17.9 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|389847375|ref|YP_006349614.1| - 0.0014 18.2 0.3 0.002 17.6 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M3 PF01432.15 gi|389847374|ref|YP_006349613.1| - 2.4e-69 234.5 5.3 2.4e-69 234.5 3.7 1.9 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|389847374|ref|YP_006349613.1| - 3.7e-23 81.3 2.3 9.1e-23 80.0 0.7 2.6 2 0 0 2 2 2 1 Oligopeptidase F PMC2NT PF08066.7 gi|389847374|ref|YP_006349613.1| - 0.068 13.4 0.1 0.61 10.4 0.0 2.7 2 0 0 2 2 2 0 PMC2NT (NUC016) domain Peptidase_MA_2 PF13485.1 gi|389847374|ref|YP_006349613.1| - 0.15 12.1 4.7 0.08 12.9 1.3 2.2 2 1 0 2 2 2 0 Peptidase MA superfamily Usp PF00582.21 gi|389847373|ref|YP_006349612.1| - 3.3e-25 88.9 0.3 5.5e-25 88.1 0.2 1.4 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|389847373|ref|YP_006349612.1| - 0.035 13.8 0.9 0.13 11.9 0.6 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein domain ETF PF01012.16 gi|389847371|ref|YP_006349610.1| - 4.8e-33 114.2 0.5 6.6e-33 113.7 0.3 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|389847370|ref|YP_006349609.1| - 6.1e-45 152.8 11.7 1.2e-44 151.9 1.0 2.4 2 1 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|389847370|ref|YP_006349609.1| - 1.7e-31 107.6 1.0 3e-31 106.8 0.7 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain Spore_YhcN_YlaJ PF09580.5 gi|389847370|ref|YP_006349609.1| - 0.0078 16.3 1.6 0.15 12.1 1.1 2.3 1 1 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Cons_hypoth95 PF03602.10 gi|389847370|ref|YP_006349609.1| - 0.16 11.3 0.2 3.2 7.0 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 GTP-bdg_N PF13167.1 gi|389847370|ref|YP_006349609.1| - 0.28 11.3 1.2 3.2 7.9 0.0 2.4 2 1 0 2 2 2 0 GTP-binding GTPase N-terminal DAO PF01266.19 gi|389847369|ref|YP_006349608.1| - 3.2e-18 65.7 9.2 8e-11 41.4 2.1 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|389847369|ref|YP_006349608.1| - 5e-13 48.9 0.2 8.1e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|389847369|ref|YP_006349608.1| - 2.5e-10 39.7 3.1 3.4e-08 32.7 0.1 2.9 3 1 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.14 gi|389847369|ref|YP_006349608.1| - 5.3e-09 35.6 7.9 2.2e-08 33.5 5.5 2.0 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|389847369|ref|YP_006349608.1| - 2.3e-08 32.9 1.1 3.6e-05 22.4 0.3 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|389847369|ref|YP_006349608.1| - 3.1e-08 32.9 0.0 5.6e-08 32.0 0.0 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|389847369|ref|YP_006349608.1| - 2.2e-07 30.7 0.1 8.9e-07 28.8 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|389847369|ref|YP_006349608.1| - 7.5e-07 29.2 0.1 1.9e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|389847369|ref|YP_006349608.1| - 1.1e-06 27.9 0.0 9.8e-06 24.8 0.0 2.1 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|389847369|ref|YP_006349608.1| - 1e-05 24.6 0.2 0.0011 17.9 0.1 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|389847369|ref|YP_006349608.1| - 1.6e-05 25.0 0.1 4.5e-05 23.5 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|389847369|ref|YP_006349608.1| - 0.00099 19.4 0.5 0.078 13.3 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|389847369|ref|YP_006349608.1| - 0.0042 15.7 1.3 0.51 8.9 0.0 2.3 1 1 1 2 2 2 2 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|389847369|ref|YP_006349608.1| - 0.0087 15.2 0.1 0.86 8.7 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase 3HCDH_N PF02737.13 gi|389847369|ref|YP_006349608.1| - 0.035 13.7 0.2 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_10 PF13237.1 gi|389847368|ref|YP_006349607.1| - 2.2e-07 30.5 11.0 3.2e-07 30.0 7.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|389847368|ref|YP_006349607.1| - 2.7e-05 23.8 12.5 0.016 15.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|389847368|ref|YP_006349607.1| - 3.7e-05 23.9 10.9 7.6e-05 22.9 7.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|389847368|ref|YP_006349607.1| - 0.00011 22.5 12.0 0.00052 20.3 8.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|389847368|ref|YP_006349607.1| - 0.00012 21.8 14.0 0.0069 16.2 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|389847368|ref|YP_006349607.1| - 0.00067 19.9 11.4 0.023 15.0 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|389847368|ref|YP_006349607.1| - 0.00075 19.3 5.0 0.001 18.9 3.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|389847368|ref|YP_006349607.1| - 0.0011 19.1 12.1 0.026 14.8 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|389847368|ref|YP_006349607.1| - 0.0016 18.4 12.7 0.026 14.5 1.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|389847368|ref|YP_006349607.1| - 0.0059 16.2 4.5 0.032 13.8 0.3 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|389847368|ref|YP_006349607.1| - 0.011 15.5 11.2 0.066 13.0 0.7 2.0 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|389847368|ref|YP_006349607.1| - 0.013 15.8 7.7 0.11 12.9 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|389847368|ref|YP_006349607.1| - 0.02 14.4 14.9 0.043 13.4 1.6 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain LBR_tudor PF09465.5 gi|389847368|ref|YP_006349607.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain DUF1272 PF06906.6 gi|389847368|ref|YP_006349607.1| - 1 9.2 7.8 1.4 8.7 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Fer4_3 PF12798.2 gi|389847368|ref|YP_006349607.1| - 1.1 9.9 15.6 4.1 8.1 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain YokU PF14122.1 gi|389847368|ref|YP_006349607.1| - 1.6 8.4 5.9 5 6.9 4.4 1.5 2 0 0 2 2 2 0 YokU-like protein Fer4_16 PF13484.1 gi|389847368|ref|YP_006349607.1| - 5.1 7.9 12.6 6.6 7.5 1.5 2.2 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Peptidase_M20 PF01546.23 gi|389847367|ref|YP_006349606.1| - 4.2e-26 91.6 0.4 5.1e-26 91.3 0.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|389847367|ref|YP_006349606.1| - 6.6e-06 25.8 0.0 1.9e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain NIR_SIR PF01077.17 gi|389847363|ref|YP_006349602.1| - 3e-45 153.3 0.1 4.7e-32 110.5 0.0 2.6 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|389847363|ref|YP_006349602.1| - 1.6e-38 130.1 0.2 1.8e-18 65.8 0.0 3.4 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain EamA PF00892.15 gi|389847361|ref|YP_006349600.1| - 4.1e-31 107.6 25.9 9.6e-16 57.9 4.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|389847361|ref|YP_006349600.1| - 1e-06 28.8 37.9 1.3e-06 28.5 4.3 4.1 1 1 2 4 4 4 3 Multidrug resistance efflux transporter UPF0060 PF02694.10 gi|389847361|ref|YP_006349600.1| - 0.016 15.1 2.6 0.016 15.1 1.8 2.4 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family DUF1459 PF07312.6 gi|389847361|ref|YP_006349600.1| - 0.026 14.4 3.4 0.12 12.3 2.4 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1459) TPT PF03151.11 gi|389847361|ref|YP_006349600.1| - 0.067 12.8 21.9 1 9.0 3.4 3.1 2 2 0 2 2 2 0 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|389847361|ref|YP_006349600.1| - 0.13 12.0 3.0 0.49 10.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 ABC2_membrane_4 PF12730.2 gi|389847360|ref|YP_006349599.1| - 8.7e-09 34.8 4.3 8.7e-09 34.8 3.0 3.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389847360|ref|YP_006349599.1| - 1e-05 24.7 4.2 1e-05 24.7 2.9 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389847360|ref|YP_006349599.1| - 3.5e-05 23.1 0.3 3.5e-05 23.1 0.2 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|389847360|ref|YP_006349599.1| - 0.0021 16.9 18.3 0.0057 15.5 5.0 3.3 3 1 0 3 3 3 2 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389847359|ref|YP_006349598.1| - 5.1e-29 101.3 0.0 1.8e-28 99.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|389847359|ref|YP_006349598.1| - 4.3e-12 46.5 0.0 2.9e-06 27.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389847359|ref|YP_006349598.1| - 3.5e-05 23.2 0.1 6e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|389847359|ref|YP_006349598.1| - 0.012 15.1 0.6 1.3 8.5 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|389847359|ref|YP_006349598.1| - 0.019 15.2 0.4 0.033 14.5 0.3 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|389847359|ref|YP_006349598.1| - 0.11 11.6 0.0 0.31 10.2 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|389847359|ref|YP_006349598.1| - 0.14 11.1 0.0 1.2 8.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain EamA PF00892.15 gi|389847357|ref|YP_006349596.1| - 3.5e-36 124.0 32.6 9.4e-19 67.6 6.8 3.0 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|389847357|ref|YP_006349596.1| - 3.3e-08 33.7 19.1 5.8e-07 29.6 2.8 3.3 3 1 1 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|389847357|ref|YP_006349596.1| - 0.00044 19.9 19.7 0.0024 17.5 5.0 2.6 2 2 0 2 2 2 2 Triose-phosphate Transporter family Nuc_sug_transp PF04142.10 gi|389847357|ref|YP_006349596.1| - 0.033 13.3 1.6 0.049 12.7 0.0 1.9 2 0 0 2 2 2 0 Nucleotide-sugar transporter DUF2892 PF11127.3 gi|389847357|ref|YP_006349596.1| - 0.57 10.0 0.1 0.57 10.0 0.0 5.4 2 1 3 6 6 6 0 Protein of unknown function (DUF2892) AsnC_trans_reg PF01037.16 gi|389847356|ref|YP_006349595.1| - 7e-11 41.6 0.3 1.2e-10 40.9 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|389847356|ref|YP_006349595.1| - 1.1e-07 31.1 0.0 2e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|389847356|ref|YP_006349595.1| - 0.00058 19.3 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|389847356|ref|YP_006349595.1| - 0.0015 18.3 0.0 0.0038 16.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GYD PF08734.6 gi|389847356|ref|YP_006349595.1| - 0.0029 17.2 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 GYD domain TrmB PF01978.14 gi|389847356|ref|YP_006349595.1| - 0.0034 17.0 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|389847356|ref|YP_006349595.1| - 0.042 13.5 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|389847356|ref|YP_006349595.1| - 0.057 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|389847356|ref|YP_006349595.1| - 0.063 12.9 0.0 0.46 10.1 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|389847356|ref|YP_006349595.1| - 0.12 12.2 0.0 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PAS_9 PF13426.1 gi|662859499|ref|YP_006349593.2| - 3.9e-36 123.5 2.7 4.4e-16 59.1 0.0 4.0 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|662859499|ref|YP_006349593.2| - 2.5e-18 65.8 0.1 9e-18 64.0 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|662859499|ref|YP_006349593.2| - 3.3e-18 65.5 0.2 2.2e-07 30.8 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|662859499|ref|YP_006349593.2| - 2.5e-16 59.6 10.6 3.5e-07 30.2 0.1 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|662859499|ref|YP_006349593.2| - 4e-13 48.6 0.1 2.1e-05 24.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|662859499|ref|YP_006349593.2| - 2.1e-08 33.9 0.6 0.00013 21.7 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|662859499|ref|YP_006349593.2| - 6.7e-08 32.3 0.3 4.7e-07 29.6 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|662859499|ref|YP_006349593.2| - 0.00033 20.5 0.5 0.00033 20.5 0.3 3.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|662859499|ref|YP_006349593.2| - 0.0026 17.4 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain DUF2396 PF09654.5 gi|662859499|ref|YP_006349593.2| - 0.041 13.8 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) SHOCT PF09851.4 gi|389847353|ref|YP_006349592.1| - 2e-09 36.5 2.3 2.9e-09 36.0 1.6 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|389847353|ref|YP_006349592.1| - 0.00028 20.5 1.0 0.00045 19.9 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|389847353|ref|YP_006349592.1| - 0.017 14.9 0.1 0.026 14.3 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein G TPPK_C PF12555.3 gi|389847353|ref|YP_006349592.1| - 3.7 7.3 11.8 0.59 9.8 0.8 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Beta-Casp PF10996.3 gi|662859498|ref|YP_006349591.2| - 1.2e-21 76.9 0.0 2.4e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|662859498|ref|YP_006349591.2| - 2.3e-15 56.7 4.7 3.6e-15 56.1 3.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|662859498|ref|YP_006349591.2| - 5.6e-10 39.0 0.7 1.1e-09 38.1 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|662859498|ref|YP_006349591.2| - 7.9e-09 35.1 0.0 1.6e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Rhodanese PF00581.15 gi|662859498|ref|YP_006349591.2| - 0.027 14.8 0.0 0.1 12.9 0.0 2.0 2 0 0 2 2 2 0 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|662859498|ref|YP_006349591.2| - 0.035 13.8 1.3 0.25 11.0 0.9 2.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Flexi_CP_N PF08358.5 gi|662859498|ref|YP_006349591.2| - 0.043 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Carlavirus coat Lycopene_cycl PF05834.7 gi|389847350|ref|YP_006349589.1| - 2.1e-10 40.0 0.0 1.3e-07 30.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|389847350|ref|YP_006349589.1| - 8.9e-10 38.0 0.0 0.00036 19.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|389847350|ref|YP_006349589.1| - 7.7e-08 31.3 0.0 0.00048 18.8 0.0 2.8 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|389847350|ref|YP_006349589.1| - 5.6e-07 28.9 0.0 3e-05 23.2 0.0 2.4 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|389847350|ref|YP_006349589.1| - 7.5e-06 25.2 0.4 1.6e-05 24.2 0.3 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|389847350|ref|YP_006349589.1| - 1.8e-05 24.6 0.0 4.5e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|389847350|ref|YP_006349589.1| - 6.8e-05 21.8 0.1 0.0002 20.3 0.0 1.7 1 1 1 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|389847350|ref|YP_006349589.1| - 0.0001 21.5 0.0 0.00054 19.1 0.0 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|389847350|ref|YP_006349589.1| - 0.00027 19.9 0.0 0.041 12.7 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|389847350|ref|YP_006349589.1| - 0.00038 19.0 0.0 0.0069 14.8 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|389847350|ref|YP_006349589.1| - 0.0051 16.8 0.0 0.019 14.9 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain MDMPI_N PF11716.3 gi|389847349|ref|YP_006349588.1| - 0.2 12.1 3.3 0.32 11.4 2.3 1.4 1 1 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain Peptidase_M10 PF00413.19 gi|389847348|ref|YP_006349587.1| - 1.3e-07 31.5 0.0 0.0027 17.4 0.0 2.3 2 0 0 2 2 2 2 Matrixin Reprolysin_2 PF13574.1 gi|389847348|ref|YP_006349587.1| - 0.0051 16.8 0.0 0.009 16.0 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|389847348|ref|YP_006349587.1| - 0.018 15.5 0.1 0.052 14.0 0.0 1.9 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.3 gi|389847348|ref|YP_006349587.1| - 0.018 14.3 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_4 PF13583.1 gi|389847348|ref|YP_006349587.1| - 0.026 14.0 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|389847348|ref|YP_006349587.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|389847348|ref|YP_006349587.1| - 0.048 12.5 0.1 0.076 11.8 0.1 1.3 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M54 PF07998.6 gi|389847348|ref|YP_006349587.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M54 Astacin PF01400.19 gi|389847348|ref|YP_006349587.1| - 0.072 12.4 0.4 0.16 11.3 0.2 1.5 1 1 0 1 1 1 0 Astacin (Peptidase family M12A) Lysis_col PF02402.11 gi|389847348|ref|YP_006349587.1| - 0.16 11.5 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 Lysis protein AMMECR1 PF01871.12 gi|389847347|ref|YP_006349586.1| - 4.1e-48 162.7 0.0 4.9e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.14 gi|389847346|ref|YP_006349585.1| - 2.6e-15 56.3 0.0 3.5e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|389847346|ref|YP_006349585.1| - 0.00025 20.8 0.0 0.00095 18.9 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF2842 PF11003.3 gi|389847345|ref|YP_006349584.1| - 0.056 13.3 0.2 0.077 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2842) SIT PF15330.1 gi|389847345|ref|YP_006349584.1| - 2.4 8.3 7.3 16 5.7 5.1 1.9 1 1 0 1 1 1 0 SHP2-interacting transmembrane adaptor protein, SIT Peptidase_MA_2 PF13485.1 gi|389847344|ref|YP_006349583.1| - 3.8e-07 30.1 0.0 1e-06 28.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase MA superfamily DUF955 PF06114.8 gi|389847344|ref|YP_006349583.1| - 0.0086 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF955) Peptidase_M76 PF09768.4 gi|389847344|ref|YP_006349583.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family DUF4157 PF13699.1 gi|389847344|ref|YP_006349583.1| - 0.057 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|389847343|ref|YP_006349582.1| - 0.0055 16.7 0.0 0.017 15.1 0.0 1.9 1 1 0 1 1 1 1 Peptidase MA superfamily LPAM_1 PF08139.7 gi|389847343|ref|YP_006349582.1| - 0.84 9.9 3.6 1.3 9.3 2.5 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Isochorismatase PF00857.15 gi|662859497|ref|YP_006349581.2| - 2.8e-47 160.8 0.1 3.1e-47 160.7 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family HORMA PF02301.13 gi|662859497|ref|YP_006349581.2| - 0.069 12.6 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 HORMA domain 4HBT PF03061.17 gi|662859496|ref|YP_006349580.2| - 1.6e-13 50.5 0.1 2.4e-13 50.0 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|662859496|ref|YP_006349580.2| - 1.2e-08 34.9 0.0 1.5e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PAS_9 PF13426.1 gi|389847340|ref|YP_006349579.1| - 4.4e-38 129.8 1.9 1.7e-13 50.8 0.1 3.8 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|389847340|ref|YP_006349579.1| - 5.7e-37 125.9 2.5 5.8e-16 58.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|389847340|ref|YP_006349579.1| - 5.6e-34 116.4 6.3 1.9e-14 53.5 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|389847340|ref|YP_006349579.1| - 7.6e-28 96.4 1.9 1.2e-12 47.7 0.2 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|389847340|ref|YP_006349579.1| - 4.7e-21 74.5 0.0 1.1e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|389847340|ref|YP_006349579.1| - 1.1e-14 53.6 1.6 1.2e-06 28.1 0.0 4.3 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|389847340|ref|YP_006349579.1| - 2.4e-13 50.1 3.2 0.0011 18.9 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|389847340|ref|YP_006349579.1| - 1.1e-11 44.9 0.2 1.6e-06 28.3 0.0 3.7 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|389847340|ref|YP_006349579.1| - 6.9e-11 41.9 0.4 6.9e-11 41.9 0.3 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|389847340|ref|YP_006349579.1| - 1.7e-09 38.2 0.4 2.4e-08 34.5 0.0 3.2 3 1 1 4 4 4 1 GAF domain GAF_3 PF13492.1 gi|389847340|ref|YP_006349579.1| - 1.2e-08 35.1 0.2 2.4e-06 27.6 0.0 3.3 3 0 0 3 3 3 1 GAF domain PAS_11 PF14598.1 gi|389847340|ref|YP_006349579.1| - 0.00025 20.9 0.0 0.0071 16.2 0.0 2.5 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.10 gi|389847340|ref|YP_006349579.1| - 0.0022 18.0 0.3 0.014 15.4 0.0 2.5 3 0 0 3 3 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Amidase_2 PF01510.20 gi|389847340|ref|YP_006349579.1| - 0.019 15.0 0.0 0.067 13.2 0.0 1.9 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase HATPase_c_3 PF13589.1 gi|389847340|ref|YP_006349579.1| - 0.019 14.6 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2111 PF09884.4 gi|389847340|ref|YP_006349579.1| - 0.03 14.1 0.1 0.089 12.6 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) PfkB PF00294.19 gi|662859495|ref|YP_006349578.2| - 0.0069 15.5 0.6 0.027 13.5 0.4 1.7 2 0 0 2 2 2 1 pfkB family carbohydrate kinase HTH_10 PF04967.7 gi|389847338|ref|YP_006349577.1| - 1e-15 57.0 0.1 1.5e-15 56.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|389847338|ref|YP_006349577.1| - 8.4e-06 25.0 0.2 1.7e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|389847338|ref|YP_006349577.1| - 0.0065 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|389847338|ref|YP_006349577.1| - 0.0083 15.5 0.2 0.019 14.4 0.1 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|389847338|ref|YP_006349577.1| - 0.087 12.5 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|389847338|ref|YP_006349577.1| - 0.088 12.6 0.1 0.26 11.1 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Homeobox PF00046.24 gi|389847338|ref|YP_006349577.1| - 0.11 12.1 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 Homeobox domain Peptidase_M23 PF01551.17 gi|389847337|ref|YP_006349576.1| - 0.03 14.3 0.0 0.66 10.0 0.0 2.6 3 0 0 3 3 3 0 Peptidase family M23 BPL_LplA_LipB PF03099.14 gi|662859494|ref|YP_006349575.2| - 6.9e-06 26.0 0.0 1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Amidohydro_4 PF13147.1 gi|389847335|ref|YP_006349574.1| - 3.2e-33 115.9 18.1 4.2e-33 115.5 12.6 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|389847335|ref|YP_006349574.1| - 6.7e-19 68.7 0.0 3e-18 66.5 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|389847335|ref|YP_006349574.1| - 2.8e-13 49.4 0.9 7.5e-13 48.0 0.2 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|389847335|ref|YP_006349574.1| - 1.5e-09 37.6 7.6 1.4e-06 27.8 2.9 2.2 2 0 0 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|389847335|ref|YP_006349574.1| - 0.0013 18.3 0.0 0.0042 16.7 0.0 1.8 1 1 0 1 1 1 1 Dihydro-orotase-like TatD_DNase PF01026.16 gi|389847335|ref|YP_006349574.1| - 0.043 13.0 0.0 0.39 9.8 0.0 2.1 1 1 0 1 1 1 0 TatD related DNase Usp PF00582.21 gi|389847335|ref|YP_006349574.1| - 0.073 13.2 0.7 0.21 11.7 0.1 2.1 2 0 0 2 2 2 0 Universal stress protein family DUF1949 PF09186.6 gi|389847334|ref|YP_006349573.1| - 0.091 12.3 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) Usp PF00582.21 gi|389847332|ref|YP_006349571.1| - 4.1e-15 56.2 1.1 7.3e-15 55.3 0.8 1.4 1 1 0 1 1 1 1 Universal stress protein family DUF1537 PF07005.6 gi|389847332|ref|YP_006349571.1| - 0.091 12.4 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF1537 Acetyltransf_1 PF00583.19 gi|389847331|ref|YP_006349570.1| - 4.5e-17 61.8 0.2 6.5e-17 61.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|389847331|ref|YP_006349570.1| - 3.8e-09 36.8 0.0 4.6e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|389847331|ref|YP_006349570.1| - 5.3e-08 32.9 0.0 6.8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847331|ref|YP_006349570.1| - 1.2e-07 31.8 0.0 1.8e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389847331|ref|YP_006349570.1| - 2.2e-07 30.7 0.0 9.9e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847331|ref|YP_006349570.1| - 2.8e-06 26.9 0.0 4.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|389847331|ref|YP_006349570.1| - 0.0029 17.5 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|389847331|ref|YP_006349570.1| - 0.0034 17.3 0.1 0.0048 16.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847331|ref|YP_006349570.1| - 0.043 13.7 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|389847331|ref|YP_006349570.1| - 0.069 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 Usp PF00582.21 gi|389847330|ref|YP_006349569.1| - 2.1e-12 47.4 5.8 9.8e-12 45.2 4.0 1.9 1 1 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|662859493|ref|YP_006349568.2| - 3.5e-34 117.9 5.6 4e-34 117.8 3.9 1.0 1 0 0 1 1 1 1 Universal stress protein family DHHA1 PF02272.14 gi|389847328|ref|YP_006349567.1| - 0.0032 17.1 0.0 0.011 15.4 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain LysM PF01476.15 gi|389847326|ref|YP_006349565.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 LysM domain Ribosomal_S6e PF01092.14 gi|389847325|ref|YP_006349564.1| - 1.3e-35 121.7 0.4 1.5e-35 121.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e DUF1272 PF06906.6 gi|389847324|ref|YP_006349563.1| - 0.0068 16.2 0.2 0.0068 16.2 0.1 1.8 3 0 0 3 3 3 1 Protein of unknown function (DUF1272) HypA PF01155.14 gi|389847324|ref|YP_006349563.1| - 0.04 13.6 0.2 0.05 13.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|389847324|ref|YP_006349563.1| - 0.078 12.8 3.6 0.29 10.9 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|389847324|ref|YP_006349563.1| - 0.13 12.2 0.3 0.13 12.2 0.2 2.5 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|389847324|ref|YP_006349563.1| - 0.31 11.0 2.8 0.82 9.6 1.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|389847324|ref|YP_006349563.1| - 0.48 10.3 3.8 0.63 10.0 0.0 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|389847324|ref|YP_006349563.1| - 0.53 9.5 3.3 1.5 8.1 2.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain HIPIP PF01355.12 gi|389847323|ref|YP_006349562.1| - 2.3e-06 27.6 3.3 4.2e-06 26.7 2.1 1.6 1 1 0 1 1 1 1 High potential iron-sulfur protein Trypan_PARP PF05887.6 gi|389847323|ref|YP_006349562.1| - 7 6.4 30.6 0.093 12.5 2.9 2.2 2 1 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) Peptidase_M29 PF02073.10 gi|389847322|ref|YP_006349561.1| - 1.5e-116 389.4 1.4 1.7e-116 389.2 1.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4147 PF13660.1 gi|389847322|ref|YP_006349561.1| - 0.021 13.9 0.1 0.037 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) DUF4388 PF14332.1 gi|389847322|ref|YP_006349561.1| - 0.031 14.1 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4388) X PF00739.14 gi|389847322|ref|YP_006349561.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Trans-activation protein X UPF0146 PF03686.8 gi|389847322|ref|YP_006349561.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) NAD_binding_2 PF03446.10 gi|389847321|ref|YP_006349560.1| - 2e-37 128.5 0.2 2.9e-37 128.0 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|389847321|ref|YP_006349560.1| - 1.1e-22 80.6 0.0 1.9e-22 79.8 0.0 1.5 1 1 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|389847321|ref|YP_006349560.1| - 3.3e-06 27.4 0.0 5.4e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|389847321|ref|YP_006349560.1| - 5.2e-05 22.9 0.1 8.2e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|389847321|ref|YP_006349560.1| - 0.00041 19.5 0.0 0.00056 19.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|389847321|ref|YP_006349560.1| - 0.00062 19.7 0.1 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_11 PF14833.1 gi|389847321|ref|YP_006349560.1| - 0.00064 19.7 0.2 0.0037 17.3 0.0 2.3 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Methyltransf_18 PF12847.2 gi|389847321|ref|YP_006349560.1| - 0.005 17.4 0.4 0.012 16.1 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain NAD_binding_10 PF13460.1 gi|389847321|ref|YP_006349560.1| - 0.0092 16.0 1.6 0.13 12.2 0.1 2.9 3 0 0 3 3 3 1 NADH(P)-binding DapB_N PF01113.15 gi|389847321|ref|YP_006349560.1| - 0.02 14.8 1.2 0.06 13.2 0.8 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.9 gi|389847321|ref|YP_006349560.1| - 0.059 12.7 0.1 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer2 PF00111.22 gi|389847320|ref|YP_006349559.1| - 1.7e-12 46.8 0.3 1.7e-12 46.8 0.2 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain MatE PF01554.13 gi|662859492|ref|YP_006349558.2| - 2.9e-63 212.3 32.8 5.7e-33 113.8 12.5 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|662859492|ref|YP_006349558.2| - 8.5e-08 32.1 10.1 8.5e-08 32.1 7.0 4.7 3 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Yae1_N PF09811.4 gi|662859492|ref|YP_006349558.2| - 0.12 11.9 0.3 0.33 10.5 0.2 1.8 1 0 0 1 1 1 0 Essential protein Yae1, N terminal TrmB PF01978.14 gi|389847318|ref|YP_006349557.1| - 4e-07 29.6 0.0 6.8e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|389847318|ref|YP_006349557.1| - 0.0042 16.8 0.0 0.0098 15.6 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|389847318|ref|YP_006349557.1| - 0.0067 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|389847318|ref|YP_006349557.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|389847318|ref|YP_006349557.1| - 0.02 14.5 0.0 0.079 12.6 0.0 1.9 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|389847318|ref|YP_006349557.1| - 0.041 13.5 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 MarR family PIN_3 PF13470.1 gi|389847317|ref|YP_006349556.1| - 0.07 13.7 0.4 0.19 12.4 0.3 1.9 1 1 0 1 1 1 0 PIN domain HA PF03457.9 gi|389847317|ref|YP_006349556.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Helicase associated domain DUF4352 PF11611.3 gi|389847316|ref|YP_006349555.1| - 1.2e-06 28.6 0.0 0.02 14.9 0.0 3.1 3 1 0 3 3 3 2 Domain of unknown function (DUF4352) CARDB PF07705.6 gi|389847316|ref|YP_006349555.1| - 0.0014 18.6 0.1 0.0041 17.1 0.0 1.8 1 0 0 1 1 1 1 CARDB DUF11 PF01345.13 gi|389847316|ref|YP_006349555.1| - 0.026 14.5 1.7 0.24 11.4 0.0 2.9 1 1 1 2 2 2 0 Domain of unknown function DUF11 Gon7 PF08738.5 gi|389847316|ref|YP_006349555.1| - 0.21 11.6 0.7 0.45 10.5 0.5 1.6 1 0 0 1 1 1 0 Gon7 family Fic PF02661.13 gi|389847315|ref|YP_006349554.1| - 2.4e-20 73.0 0.0 1.2e-19 70.7 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.1 gi|389847315|ref|YP_006349554.1| - 6.7e-15 54.7 0.3 1.2e-14 53.9 0.2 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.14 gi|389847315|ref|YP_006349554.1| - 9.8e-09 34.7 0.0 2.5e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|389847315|ref|YP_006349554.1| - 4.8e-06 26.1 0.0 1.1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|389847315|ref|YP_006349554.1| - 3.7e-05 23.2 0.0 8.1e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|389847315|ref|YP_006349554.1| - 0.00012 21.8 0.0 0.00029 20.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|389847315|ref|YP_006349554.1| - 0.014 14.7 0.1 0.047 13.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|389847315|ref|YP_006349554.1| - 0.02 14.5 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|389847315|ref|YP_006349554.1| - 0.029 13.9 0.0 0.18 11.4 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|389847315|ref|YP_006349554.1| - 0.049 13.3 0.0 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|389847315|ref|YP_006349554.1| - 0.05 13.5 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family DUF2250 PF10007.4 gi|389847315|ref|YP_006349554.1| - 0.075 12.9 0.0 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|389847315|ref|YP_006349554.1| - 0.1 12.4 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family DUF4172 PF13776.1 gi|389847315|ref|YP_006349554.1| - 0.11 12.6 0.0 0.29 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) HTH_23 PF13384.1 gi|389847315|ref|YP_006349554.1| - 0.11 12.1 0.0 0.37 10.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.15 gi|389847315|ref|YP_006349554.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator NTP_transf_2 PF01909.18 gi|389847314|ref|YP_006349553.1| - 1.2e-08 35.2 0.3 3e-08 33.8 0.1 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain HTH_11 PF08279.7 gi|389847314|ref|YP_006349553.1| - 9.2e-07 28.4 0.0 1.6e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|389847314|ref|YP_006349553.1| - 2.4e-06 27.1 0.0 5.4e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|389847314|ref|YP_006349553.1| - 0.0024 17.4 0.0 0.005 16.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF294 PF03445.8 gi|389847314|ref|YP_006349553.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_24 PF13412.1 gi|389847314|ref|YP_006349553.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|389847314|ref|YP_006349553.1| - 0.057 13.0 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain MarR_2 PF12802.2 gi|389847314|ref|YP_006349553.1| - 0.11 12.2 0.2 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 MarR family HEPN PF05168.9 gi|662859491|ref|YP_006349552.2| - 0.0058 16.5 0.4 0.013 15.3 0.0 1.8 2 1 0 2 2 2 1 HEPN domain peroxidase PF00141.18 gi|389847312|ref|YP_006349551.1| - 1.5e-87 292.9 0.0 1.4e-48 165.4 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DUF4013 PF13197.1 gi|389847310|ref|YP_006349549.1| - 7.3e-37 126.3 20.7 1.1e-36 125.7 14.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) HTH_10 PF04967.7 gi|662859490|ref|YP_006349547.2| - 1.2e-18 66.3 0.1 1.9e-18 65.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|662859490|ref|YP_006349547.2| - 0.0015 18.2 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|662859490|ref|YP_006349547.2| - 0.0034 16.7 0.2 0.0097 15.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|662859490|ref|YP_006349547.2| - 0.013 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|662859490|ref|YP_006349547.2| - 0.029 13.6 0.1 0.059 12.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|662859490|ref|YP_006349547.2| - 0.048 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HCBP_related PF06594.6 gi|662859490|ref|YP_006349547.2| - 0.11 12.1 0.9 0.23 11.1 0.1 1.9 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain SBP_bac_5 PF00496.17 gi|389847307|ref|YP_006349546.1| - 1.9e-59 201.3 2.8 3.1e-58 197.3 0.9 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_3 PF00497.15 gi|389847307|ref|YP_006349546.1| - 0.054 12.7 0.0 0.11 11.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 UCR_Fe-S_N PF10399.4 gi|389847307|ref|YP_006349546.1| - 0.09 11.9 0.5 0.2 10.8 0.3 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|389847307|ref|YP_006349546.1| - 2.5 8.3 7.2 0.17 11.9 0.8 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence CoA_transf_3 PF02515.12 gi|662859489|ref|YP_006349545.2| - 6.1e-59 198.4 0.0 7.9e-59 198.1 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III HpcH_HpaI PF03328.9 gi|389847305|ref|YP_006349544.1| - 3.3e-31 107.8 0.6 3.3e-31 107.8 0.4 1.5 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|389847305|ref|YP_006349544.1| - 4.2e-11 42.2 0.1 0.00019 20.3 0.0 2.4 2 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PEP-utilizers_C PF02896.13 gi|389847305|ref|YP_006349544.1| - 0.067 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain DUF4597 PF15366.1 gi|389847305|ref|YP_006349544.1| - 0.12 12.0 0.0 0.32 10.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4597) BPD_transp_1 PF00528.17 gi|389847304|ref|YP_006349543.1| - 5.2e-32 110.8 10.8 5.2e-32 110.8 7.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|389847302|ref|YP_006349541.1| - 6.8e-20 71.3 12.8 6.8e-20 71.3 8.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|389847302|ref|YP_006349541.1| - 8.8e-07 28.2 1.7 1.3e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|389847301|ref|YP_006349540.1| - 5.5e-62 208.0 0.0 6.9e-33 113.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|389847301|ref|YP_006349540.1| - 2.5e-36 123.8 1.3 5.3e-18 65.1 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|389847301|ref|YP_006349540.1| - 4.8e-17 62.8 2.1 1.9e-05 24.7 0.0 4.1 2 2 0 4 4 4 4 AAA domain AAA_22 PF13401.1 gi|389847301|ref|YP_006349540.1| - 4e-09 36.7 1.3 0.00028 21.0 0.1 3.6 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|389847301|ref|YP_006349540.1| - 6.7e-09 35.1 0.3 0.00047 19.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|389847301|ref|YP_006349540.1| - 4.5e-07 30.2 0.1 0.009 16.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|389847301|ref|YP_006349540.1| - 2.3e-06 27.6 0.0 0.038 13.9 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|389847301|ref|YP_006349540.1| - 5e-05 22.5 0.4 0.64 8.9 0.0 3.6 4 0 0 4 4 4 2 AAA ATPase domain PRK PF00485.13 gi|389847301|ref|YP_006349540.1| - 7e-05 22.4 0.0 0.13 11.8 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.14 gi|389847301|ref|YP_006349540.1| - 8.7e-05 21.8 3.4 0.086 12.0 0.0 3.4 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|389847301|ref|YP_006349540.1| - 0.00018 20.7 0.2 0.44 9.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|389847301|ref|YP_006349540.1| - 0.00031 21.5 0.0 0.23 12.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|389847301|ref|YP_006349540.1| - 0.00043 20.6 0.0 0.082 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|389847301|ref|YP_006349540.1| - 0.00056 19.1 0.0 0.019 14.1 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|389847301|ref|YP_006349540.1| - 0.00064 18.5 1.1 0.64 8.7 0.0 2.4 2 0 0 2 2 2 2 ArgK protein AAA_25 PF13481.1 gi|389847301|ref|YP_006349540.1| - 0.00068 19.0 0.0 0.88 8.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|389847301|ref|YP_006349540.1| - 0.0015 18.6 0.0 1.8 8.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.9 gi|389847301|ref|YP_006349540.1| - 0.0028 17.3 0.0 0.46 10.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|389847301|ref|YP_006349540.1| - 0.0029 17.5 0.0 0.42 10.5 0.0 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|389847301|ref|YP_006349540.1| - 0.0048 16.3 0.3 2.1 7.6 0.0 2.9 2 1 1 3 3 3 1 AAA-like domain AAA_33 PF13671.1 gi|389847301|ref|YP_006349540.1| - 0.007 16.2 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|389847301|ref|YP_006349540.1| - 0.012 15.2 0.1 3.5 7.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain KaiC PF06745.8 gi|389847301|ref|YP_006349540.1| - 0.017 14.2 0.4 0.77 8.8 0.0 2.3 2 0 0 2 2 2 0 KaiC Miro PF08477.8 gi|389847301|ref|YP_006349540.1| - 0.017 15.5 0.1 3 8.3 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein T2SE PF00437.15 gi|389847301|ref|YP_006349540.1| - 0.021 13.7 1.5 1.5 7.6 0.1 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.24 gi|389847301|ref|YP_006349540.1| - 0.022 14.9 0.6 10 6.3 0.0 3.2 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|389847301|ref|YP_006349540.1| - 0.034 13.6 0.1 4.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|389847301|ref|YP_006349540.1| - 0.043 12.9 0.6 1.9 7.5 0.1 2.4 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|389847301|ref|YP_006349540.1| - 0.044 12.6 0.9 1.3 7.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|389847301|ref|YP_006349540.1| - 0.049 13.3 0.4 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|389847301|ref|YP_006349540.1| - 0.056 12.8 0.1 3.6 6.9 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|389847301|ref|YP_006349540.1| - 0.056 12.9 0.3 4.6 6.6 0.1 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|389847301|ref|YP_006349540.1| - 0.059 13.1 0.1 12 5.6 0.0 2.5 3 0 0 3 3 2 0 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|389847301|ref|YP_006349540.1| - 0.099 12.3 0.5 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_28 PF13521.1 gi|389847301|ref|YP_006349540.1| - 0.1 12.5 0.1 5.3 6.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|389847301|ref|YP_006349540.1| - 0.13 11.7 0.0 4.7 6.6 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|389847301|ref|YP_006349540.1| - 0.13 11.9 0.8 5.7 6.6 0.0 2.5 2 0 0 2 2 2 0 NTPase zf-CCCH_2 PF14608.1 gi|389847301|ref|YP_006349540.1| - 0.71 9.9 4.8 6.7 6.8 0.4 2.5 2 0 0 2 2 2 0 Zinc finger C-x8-C-x5-C-x3-H type DUF21 PF01595.15 gi|389847300|ref|YP_006349539.1| - 3.8e-53 179.4 2.9 5.8e-53 178.9 2.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|389847300|ref|YP_006349539.1| - 2.6e-19 68.7 1.3 5.7e-19 67.6 0.9 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|389847300|ref|YP_006349539.1| - 2.1e-17 62.6 2.4 3.8e-08 32.9 0.2 2.9 2 0 0 2 2 2 2 CBS domain PHB_acc_N PF07879.6 gi|389847300|ref|YP_006349539.1| - 0.057 13.1 2.6 0.11 12.2 0.0 2.6 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain Usp PF00582.21 gi|389847299|ref|YP_006349538.1| - 8.3e-21 74.6 0.2 1.1e-20 74.2 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF3646 PF12362.3 gi|389847298|ref|YP_006349537.1| - 0.067 13.1 0.8 0.16 11.9 0.4 1.8 1 1 1 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal Band_7 PF01145.20 gi|389847298|ref|YP_006349537.1| - 4.2 7.2 5.7 3.2 7.6 2.0 2.0 1 1 1 2 2 2 0 SPFH domain / Band 7 family Abi PF02517.11 gi|389847297|ref|YP_006349536.1| - 2.9e-12 46.5 11.5 6.2e-12 45.4 8.0 1.8 1 1 0 1 1 1 1 CAAX protease self-immunity Polysacc_synt_C PF14667.1 gi|389847297|ref|YP_006349536.1| - 0.083 12.6 13.3 0.52 10.1 3.6 2.7 2 1 1 3 3 3 0 Polysaccharide biosynthesis C-terminal domain Gate PF07670.9 gi|389847296|ref|YP_006349535.1| - 7.3e-09 35.5 4.3 7.3e-09 35.5 3.0 3.7 3 2 0 3 3 3 2 Nucleoside recognition Peripla_BP_2 PF01497.13 gi|389847295|ref|YP_006349534.1| - 3e-14 52.7 0.0 4.2e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|389847295|ref|YP_006349534.1| - 0.0014 18.4 0.3 0.0032 17.3 0.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UPF0104 PF03706.8 gi|389847293|ref|YP_006349532.1| - 6.9e-17 61.6 37.7 9.4e-17 61.2 26.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Fer2 PF00111.22 gi|389847292|ref|YP_006349531.1| - 2.4e-12 46.4 0.3 2.4e-12 46.4 0.2 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|389847292|ref|YP_006349531.1| - 1.6e-10 40.5 0.0 2.9e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|389847292|ref|YP_006349531.1| - 0.051 12.9 0.0 0.087 12.2 0.0 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein FKBP_C PF00254.23 gi|662859488|ref|YP_006349529.2| - 1.7e-25 88.8 0.0 3.1e-25 88.0 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|662859488|ref|YP_006349529.2| - 0.012 15.3 0.2 0.027 14.1 0.1 1.6 1 0 0 1 1 1 0 Preprotein translocase subunit DUF2187 PF09953.4 gi|662859488|ref|YP_006349529.2| - 0.06 13.0 0.1 0.27 11.0 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) DUF150 PF02576.12 gi|662859488|ref|YP_006349529.2| - 0.11 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YhbC family COG0779 TOBE PF03459.12 gi|662859488|ref|YP_006349529.2| - 0.18 11.9 1.5 0.96 9.6 0.3 2.3 2 0 0 2 2 2 0 TOBE domain ABC_tran PF00005.22 gi|389847289|ref|YP_006349528.1| - 2.8e-30 105.3 0.0 4.6e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847289|ref|YP_006349528.1| - 1.8e-12 47.8 0.1 4.4e-06 26.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389847289|ref|YP_006349528.1| - 3.9e-10 39.3 0.1 1.4e-07 30.9 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|389847289|ref|YP_006349528.1| - 3.3e-07 30.5 0.2 1.2e-06 28.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|389847289|ref|YP_006349528.1| - 2.6e-06 26.3 0.0 0.016 13.8 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|389847289|ref|YP_006349528.1| - 5.6e-06 25.7 0.0 1.3e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|389847289|ref|YP_006349528.1| - 6.2e-06 26.3 2.8 4.7e-05 23.4 2.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|389847289|ref|YP_006349528.1| - 2.1e-05 23.9 0.9 0.00025 20.5 0.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|389847289|ref|YP_006349528.1| - 8.2e-05 23.4 0.1 0.00018 22.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain HD PF01966.17 gi|389847289|ref|YP_006349528.1| - 0.0001 22.3 0.0 0.00027 20.9 0.0 1.6 1 0 0 1 1 1 1 HD domain AAA_15 PF13175.1 gi|389847289|ref|YP_006349528.1| - 0.00012 21.2 0.0 0.022 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|389847289|ref|YP_006349528.1| - 0.00016 22.0 0.0 0.0003 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|389847289|ref|YP_006349528.1| - 0.00018 21.3 0.0 0.00089 19.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|389847289|ref|YP_006349528.1| - 0.00023 21.0 0.1 0.00041 20.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|389847289|ref|YP_006349528.1| - 0.00078 19.1 0.0 0.0029 17.3 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|389847289|ref|YP_006349528.1| - 0.0011 18.6 0.1 0.004 16.8 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|389847289|ref|YP_006349528.1| - 0.0013 18.4 0.0 0.0019 17.9 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|389847289|ref|YP_006349528.1| - 0.0016 17.6 0.0 0.0023 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389847289|ref|YP_006349528.1| - 0.0021 17.5 0.0 0.0065 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain Mg_chelatase PF01078.16 gi|389847289|ref|YP_006349528.1| - 0.0027 16.9 0.0 0.57 9.3 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|389847289|ref|YP_006349528.1| - 0.003 17.8 0.0 0.0061 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|389847289|ref|YP_006349528.1| - 0.0047 16.4 0.0 0.4 10.1 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|389847289|ref|YP_006349528.1| - 0.0052 16.9 0.0 0.019 15.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|389847289|ref|YP_006349528.1| - 0.0056 16.2 0.0 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|389847289|ref|YP_006349528.1| - 0.0057 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 RNA helicase SRP54 PF00448.17 gi|389847289|ref|YP_006349528.1| - 0.0071 15.8 0.0 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|389847289|ref|YP_006349528.1| - 0.013 15.5 0.0 0.052 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|389847289|ref|YP_006349528.1| - 0.013 15.3 0.0 0.046 13.6 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|389847289|ref|YP_006349528.1| - 0.014 15.1 0.0 0.039 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|389847289|ref|YP_006349528.1| - 0.018 14.4 0.0 0.071 12.5 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|389847289|ref|YP_006349528.1| - 0.037 13.6 0.0 0.077 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 APS_kinase PF01583.15 gi|389847289|ref|YP_006349528.1| - 0.043 13.4 0.1 0.32 10.6 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase SbcCD_C PF13558.1 gi|389847289|ref|YP_006349528.1| - 0.057 13.3 0.4 0.94 9.4 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|389847289|ref|YP_006349528.1| - 0.059 12.0 0.0 0.084 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ATP-synt_ab PF00006.20 gi|389847289|ref|YP_006349528.1| - 0.088 12.2 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_PrkA PF08298.6 gi|389847289|ref|YP_006349528.1| - 0.1 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain NTPase_1 PF03266.10 gi|389847289|ref|YP_006349528.1| - 0.14 11.8 0.1 0.48 10.1 0.0 1.9 2 1 0 2 2 2 0 NTPase AAA_24 PF13479.1 gi|389847289|ref|YP_006349528.1| - 0.16 11.5 0.3 0.31 10.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain FecCD PF01032.13 gi|662859487|ref|YP_006349527.2| - 1.8e-91 306.2 35.2 2.2e-91 305.9 24.4 1.1 1 0 0 1 1 1 1 FecCD transport family DAO PF01266.19 gi|662859486|ref|YP_006349526.2| - 3.3e-11 42.7 2.1 1.4e-06 27.4 0.2 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|662859486|ref|YP_006349526.2| - 2e-08 34.3 0.1 5.2e-08 32.9 0.0 1.6 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|662859486|ref|YP_006349526.2| - 9.1e-07 28.8 0.3 3.1e-06 27.1 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|662859486|ref|YP_006349526.2| - 1.6e-06 27.4 3.2 3e-06 26.5 0.4 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|662859486|ref|YP_006349526.2| - 6.9e-06 25.3 0.2 2.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|662859486|ref|YP_006349526.2| - 1.8e-05 23.8 0.5 7.9e-05 21.6 0.2 1.9 1 1 1 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|662859486|ref|YP_006349526.2| - 3e-05 23.1 0.0 0.094 11.6 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|662859486|ref|YP_006349526.2| - 4.7e-05 22.4 0.7 4.7e-05 22.4 0.5 1.9 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|662859486|ref|YP_006349526.2| - 5.9e-05 21.7 0.1 0.00035 19.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|662859486|ref|YP_006349526.2| - 0.00027 20.1 0.1 0.00062 18.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|662859486|ref|YP_006349526.2| - 0.0015 18.6 0.0 0.81 9.7 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|662859486|ref|YP_006349526.2| - 0.0021 18.4 0.1 0.0051 17.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|662859486|ref|YP_006349526.2| - 0.023 14.4 3.3 1.3 8.7 0.2 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|662859486|ref|YP_006349526.2| - 0.044 12.3 3.8 1.1 7.8 0.4 2.1 1 1 1 2 2 2 0 Tryptophan halogenase Acetyltransf_3 PF13302.1 gi|389847286|ref|YP_006349525.1| - 1.4e-14 54.4 0.0 1.9e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|389847286|ref|YP_006349525.1| - 3e-13 49.5 0.0 6.5e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389847286|ref|YP_006349525.1| - 1.3e-07 31.7 0.0 1.7e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389847286|ref|YP_006349525.1| - 2.3e-07 30.4 0.0 4.9e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|389847286|ref|YP_006349525.1| - 6.6e-07 29.3 0.0 8.2e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|389847286|ref|YP_006349525.1| - 5.2e-06 26.3 0.0 5.4e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389847286|ref|YP_006349525.1| - 1.3e-05 25.2 0.0 2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389847286|ref|YP_006349525.1| - 0.015 15.1 0.1 0.038 13.8 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|389847286|ref|YP_006349525.1| - 0.11 12.3 0.1 0.27 11.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain RIG-I_C-RD PF11648.3 gi|389847285|ref|YP_006349524.1| - 0.096 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of RIG-I Abhydrolase_6 PF12697.2 gi|389847284|ref|YP_006349523.1| - 1e-22 81.1 2.3 1.3e-22 80.8 1.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389847284|ref|YP_006349523.1| - 6.3e-16 58.4 0.1 9e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|389847284|ref|YP_006349523.1| - 2e-09 37.3 0.0 7.9e-09 35.4 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|389847284|ref|YP_006349523.1| - 2.7e-06 27.0 0.0 5.7e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|389847284|ref|YP_006349523.1| - 0.00014 21.6 0.0 0.029 14.2 0.0 2.4 2 0 0 2 2 2 2 Putative lysophospholipase FSH1 PF03959.8 gi|389847284|ref|YP_006349523.1| - 0.038 13.4 0.0 0.3 10.4 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|389847284|ref|YP_006349523.1| - 0.048 12.8 0.0 0.55 9.4 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family AMP-binding PF00501.23 gi|389847283|ref|YP_006349522.1| - 7.9e-94 314.3 0.4 9.4e-94 314.1 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|389847283|ref|YP_006349522.1| - 3.4e-17 63.1 0.1 1.2e-16 61.4 0.1 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ABC_tran PF00005.22 gi|389847282|ref|YP_006349521.1| - 1.6e-27 96.4 0.0 2.1e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847282|ref|YP_006349521.1| - 1.3e-07 31.9 0.0 0.0007 19.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|389847282|ref|YP_006349521.1| - 0.0028 16.8 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|389847282|ref|YP_006349521.1| - 0.024 14.1 0.2 0.042 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389847282|ref|YP_006349521.1| - 0.027 14.8 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|389847282|ref|YP_006349521.1| - 0.064 12.3 0.1 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|389847282|ref|YP_006349521.1| - 0.15 10.9 0.6 0.25 10.1 0.4 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|389847281|ref|YP_006349520.1| - 3.1e-27 95.5 0.0 4.4e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389847281|ref|YP_006349520.1| - 1.5e-07 31.6 0.0 0.0012 18.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|389847281|ref|YP_006349520.1| - 1.3e-06 28.8 0.0 1.7e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389847281|ref|YP_006349520.1| - 0.00013 22.0 0.0 0.00017 21.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|389847281|ref|YP_006349520.1| - 0.00024 20.2 0.0 0.0004 19.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|389847281|ref|YP_006349520.1| - 0.00028 20.1 0.0 0.00042 19.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|389847281|ref|YP_006349520.1| - 0.00035 20.0 0.0 0.00066 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|389847281|ref|YP_006349520.1| - 0.00065 20.5 0.1 0.0018 19.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|389847281|ref|YP_006349520.1| - 0.00068 18.9 0.1 0.0015 17.8 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|389847281|ref|YP_006349520.1| - 0.00073 19.0 0.0 0.024 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|389847281|ref|YP_006349520.1| - 0.00082 19.6 0.0 0.025 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|389847281|ref|YP_006349520.1| - 0.0021 18.0 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|389847281|ref|YP_006349520.1| - 0.0026 17.7 0.2 0.0098 15.8 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|389847281|ref|YP_006349520.1| - 0.0039 17.0 0.0 0.0082 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|389847281|ref|YP_006349520.1| - 0.0042 15.7 0.3 0.8 8.2 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|389847281|ref|YP_006349520.1| - 0.0044 16.8 0.0 0.0064 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|389847281|ref|YP_006349520.1| - 0.0071 14.8 0.0 0.0085 14.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|389847281|ref|YP_006349520.1| - 0.0073 16.0 0.1 0.02 14.6 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|389847281|ref|YP_006349520.1| - 0.0077 15.1 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|389847281|ref|YP_006349520.1| - 0.0081 16.3 0.0 0.013 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|389847281|ref|YP_006349520.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|389847281|ref|YP_006349520.1| - 0.016 14.6 0.7 0.037 13.4 0.1 2.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|389847281|ref|YP_006349520.1| - 0.018 14.5 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|389847281|ref|YP_006349520.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|389847281|ref|YP_006349520.1| - 0.023 14.0 0.0 0.046 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|389847281|ref|YP_006349520.1| - 0.045 13.9 0.0 0.12 12.6 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|389847281|ref|YP_006349520.1| - 0.047 13.0 0.0 0.086 12.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase UPF0079 PF02367.12 gi|389847281|ref|YP_006349520.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|389847281|ref|YP_006349520.1| - 0.056 13.6 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.1 gi|389847281|ref|YP_006349520.1| - 0.057 12.4 0.0 0.19 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain SRPRB PF09439.5 gi|389847281|ref|YP_006349520.1| - 0.062 12.5 0.1 0.1 11.8 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.1 gi|389847281|ref|YP_006349520.1| - 0.069 12.7 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain Miro PF08477.8 gi|389847281|ref|YP_006349520.1| - 0.084 13.3 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_19 PF13245.1 gi|389847281|ref|YP_006349520.1| - 0.097 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain BetR PF08667.5 gi|389847281|ref|YP_006349520.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 BetR domain NACHT PF05729.7 gi|389847281|ref|YP_006349520.1| - 0.12 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PIF1 PF05970.9 gi|389847281|ref|YP_006349520.1| - 0.14 11.1 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase BPD_transp_2 PF02653.11 gi|389847279|ref|YP_006349518.1| - 2e-37 128.5 29.5 3.5e-37 127.8 20.4 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1212 PF06738.7 gi|389847279|ref|YP_006349518.1| - 0.36 10.2 14.3 0.31 10.5 5.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) BPD_transp_2 PF02653.11 gi|389847278|ref|YP_006349517.1| - 8.2e-31 106.9 36.6 1.1e-30 106.5 25.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4131 PF13567.1 gi|389847278|ref|YP_006349517.1| - 0.014 14.8 2.4 0.014 14.8 1.7 3.6 2 2 1 4 4 4 0 Domain of unknown function (DUF4131) Peripla_BP_6 PF13458.1 gi|389847277|ref|YP_006349516.1| - 5.3e-39 134.5 11.1 6.4e-39 134.2 7.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|389847277|ref|YP_006349516.1| - 1.9e-15 56.5 0.3 1.8e-14 53.2 0.2 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain MCR_beta_N PF02783.10 gi|389847277|ref|YP_006349516.1| - 0.032 13.7 0.4 0.085 12.3 0.1 1.8 2 0 0 2 2 2 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain ANF_receptor PF01094.23 gi|389847277|ref|YP_006349516.1| - 0.072 11.8 0.0 4.7 5.8 0.0 2.3 2 0 0 2 2 2 0 Receptor family ligand binding region HTH_10 PF04967.7 gi|389847276|ref|YP_006349515.1| - 3.7e-15 55.2 0.0 6.6e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|389847276|ref|YP_006349515.1| - 0.0019 17.8 0.0 0.0067 16.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|389847276|ref|YP_006349515.1| - 0.032 13.6 0.0 0.068 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|389847276|ref|YP_006349515.1| - 0.043 13.4 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.9 gi|389847276|ref|YP_006349515.1| - 0.083 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_27 PF13463.1 gi|389847276|ref|YP_006349515.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|389847276|ref|YP_006349515.1| - 0.11 12.2 0.1 0.34 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HMA PF00403.21 gi|389847275|ref|YP_006349514.1| - 9.5e-18 64.1 0.8 1e-17 63.9 0.6 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_3 PF13192.1 gi|389847275|ref|YP_006349514.1| - 0.12 12.2 0.9 0.17 11.7 0.6 1.5 1 1 0 1 1 1 0 Thioredoxin domain HTH_24 PF13412.1 gi|389847274|ref|YP_006349513.1| - 1.8e-15 56.0 0.1 3.2e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|389847274|ref|YP_006349513.1| - 2.1e-15 55.9 3.5 5.2e-15 54.7 2.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|389847274|ref|YP_006349513.1| - 2.2e-07 30.3 0.1 5.6e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|389847274|ref|YP_006349513.1| - 1.1e-06 28.1 0.3 2e-06 27.3 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|389847274|ref|YP_006349513.1| - 4.2e-05 23.2 0.6 8.5e-05 22.2 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|389847274|ref|YP_006349513.1| - 0.00013 21.4 0.1 0.00037 20.0 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|389847274|ref|YP_006349513.1| - 0.00016 21.2 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Arc_trans_TRASH PF08394.5 gi|389847274|ref|YP_006349513.1| - 0.0013 18.8 1.8 0.0021 18.1 1.3 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain YHS PF04945.8 gi|389847274|ref|YP_006349513.1| - 0.0013 18.5 0.6 0.0025 17.6 0.4 1.4 1 0 0 1 1 1 1 YHS domain HTH_27 PF13463.1 gi|389847274|ref|YP_006349513.1| - 0.0022 18.2 0.1 0.014 15.6 0.0 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|389847274|ref|YP_006349513.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB zf-FCS PF06467.9 gi|389847274|ref|YP_006349513.1| - 0.024 14.2 2.2 0.037 13.6 1.5 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif LIM PF00412.17 gi|389847274|ref|YP_006349513.1| - 0.036 14.1 0.7 0.059 13.4 0.5 1.3 1 0 0 1 1 1 0 LIM domain HTH_Tnp_ISL3 PF13542.1 gi|389847274|ref|YP_006349513.1| - 0.078 12.1 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Hydrolase PF00702.21 gi|662859485|ref|YP_006349512.2| - 7.8e-56 189.8 8.2 1.7e-55 188.7 5.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|662859485|ref|YP_006349512.2| - 1.2e-50 171.7 0.3 2.2e-50 170.8 0.2 1.5 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.21 gi|662859485|ref|YP_006349512.2| - 7.5e-32 109.2 0.0 1.7e-15 56.8 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|662859485|ref|YP_006349512.2| - 4.8e-20 72.5 0.2 1.3e-19 71.0 0.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|662859485|ref|YP_006349512.2| - 2.5e-06 27.2 2.0 0.00047 19.8 0.7 2.8 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|662859485|ref|YP_006349512.2| - 0.00071 19.4 1.2 0.0077 16.0 0.0 3.4 4 1 0 4 4 4 1 Haloacid dehalogenase-like hydrolase DUF965 PF06135.7 gi|662859485|ref|YP_006349512.2| - 0.016 15.2 0.0 3.7 7.6 0.0 2.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF965) TPR_12 PF13424.1 gi|389847271|ref|YP_006349510.1| - 8.1e-32 109.0 22.9 1.9e-13 50.1 0.2 7.0 5 1 0 6 6 6 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|389847271|ref|YP_006349510.1| - 3.9e-19 68.0 12.5 7.8e-07 28.6 0.0 6.8 5 1 2 7 7 7 5 TPR repeat TPR_2 PF07719.12 gi|389847271|ref|YP_006349510.1| - 3e-17 61.0 12.1 0.0087 15.9 0.0 10.4 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|389847271|ref|YP_006349510.1| - 2.9e-15 55.6 34.1 0.0002 21.1 0.5 8.0 8 0 0 8 8 7 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|389847271|ref|YP_006349510.1| - 1.7e-14 52.3 0.0 0.017 14.8 0.0 7.3 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|389847271|ref|YP_006349510.1| - 2.4e-11 43.2 41.5 0.57 10.9 0.0 11.2 8 2 4 12 12 9 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|389847271|ref|YP_006349510.1| - 1.8e-10 41.1 30.1 0.00045 20.7 0.2 7.8 6 1 0 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|389847271|ref|YP_006349510.1| - 7.4e-10 37.8 21.8 0.055 13.2 0.2 8.4 7 1 0 7 7 7 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|389847271|ref|YP_006349510.1| - 2e-08 33.4 3.5 0.02 14.5 0.0 7.1 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|389847271|ref|YP_006349510.1| - 3.5e-07 30.4 24.4 0.4 11.0 0.5 7.3 2 1 6 8 8 8 3 Tetratricopeptide repeat TPR_21 PF09976.4 gi|389847271|ref|YP_006349510.1| - 4.2e-06 26.7 11.6 0.029 14.3 2.5 4.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|389847271|ref|YP_006349510.1| - 7.9e-05 22.5 0.3 49 4.4 0.0 6.3 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_4 PF07721.9 gi|389847271|ref|YP_006349510.1| - 8.8e-05 22.5 33.0 0.51 10.9 0.0 8.4 7 0 0 7 7 7 2 Tetratricopeptide repeat AAA_25 PF13481.1 gi|389847271|ref|YP_006349510.1| - 0.0001 21.7 0.4 0.00041 19.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|389847271|ref|YP_006349510.1| - 0.00047 19.8 0.3 0.0028 17.3 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain GntR PF00392.16 gi|389847271|ref|YP_006349510.1| - 0.0056 16.0 0.0 0.036 13.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family ABC_tran PF00005.22 gi|389847271|ref|YP_006349510.1| - 0.0071 16.6 0.0 0.026 14.8 0.0 2.0 1 0 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|389847271|ref|YP_006349510.1| - 0.017 14.3 0.0 0.04 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|389847271|ref|YP_006349510.1| - 0.018 14.9 0.1 0.15 11.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|389847271|ref|YP_006349510.1| - 0.02 15.0 0.2 0.28 11.3 0.0 3.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|389847271|ref|YP_006349510.1| - 0.025 15.3 6.0 0.051 14.3 0.2 4.0 4 1 0 4 4 3 0 AAA domain TPR_5 PF12688.2 gi|389847271|ref|YP_006349510.1| - 0.031 14.2 8.7 0.28 11.2 0.4 3.7 2 1 1 3 3 3 0 Tetratrico peptide repeat TrmB PF01978.14 gi|389847271|ref|YP_006349510.1| - 0.039 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|389847271|ref|YP_006349510.1| - 0.063 13.4 0.0 0.2 11.8 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DinB_2 PF12867.2 gi|389847271|ref|YP_006349510.1| - 0.072 13.4 2.7 4.9 7.5 1.8 3.6 1 1 0 1 1 1 0 DinB superfamily MMR_HSR1 PF01926.18 gi|389847271|ref|YP_006349510.1| - 0.089 12.7 0.0 0.59 10.0 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase TPR_6 PF13174.1 gi|389847271|ref|YP_006349510.1| - 0.25 11.8 10.6 1e+02 3.7 0.1 7.7 8 1 0 8 8 5 0 Tetratricopeptide repeat MC1 PF05854.6 gi|389848346|ref|YP_006350585.1| - 1.7e-42 143.3 0.4 1.9e-42 143.1 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.5 gi|389848347|ref|YP_006350586.1| - 0.0013 18.5 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|389848347|ref|YP_006350586.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DHO_dh PF01180.16 gi|389848348|ref|YP_006350587.1| - 1.4e-83 280.3 0.0 1.6e-83 280.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|389848348|ref|YP_006350587.1| - 0.0061 15.7 0.1 0.015 14.4 0.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.12 gi|389848348|ref|YP_006350587.1| - 0.011 14.9 0.8 0.025 13.8 0.1 1.8 2 0 0 2 2 2 0 PcrB family His_biosynth PF00977.16 gi|389848348|ref|YP_006350587.1| - 0.062 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein tRNA-synt_1 PF00133.17 gi|389848350|ref|YP_006350589.1| - 2.3e-130 435.4 0.0 2e-129 432.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|389848350|ref|YP_006350589.1| - 1.1e-30 106.4 0.3 2.5e-30 105.2 0.0 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|389848350|ref|YP_006350589.1| - 5.4e-24 84.5 2.9 1.2e-11 43.9 0.1 3.7 3 1 1 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|389848350|ref|YP_006350589.1| - 2.8e-06 26.7 0.0 5e-05 22.6 0.0 2.5 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|389848350|ref|YP_006350589.1| - 9.4e-06 24.9 0.0 0.003 16.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|389848350|ref|YP_006350589.1| - 0.00076 18.2 0.1 0.0062 15.2 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) zf-C2H2_3 PF13878.1 gi|389848350|ref|YP_006350589.1| - 0.049 13.1 0.1 0.16 11.5 0.1 1.8 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.1 gi|389848350|ref|YP_006350589.1| - 0.63 10.3 5.0 18 5.7 0.1 3.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar Cys_Met_Meta_PP PF01053.15 gi|389848351|ref|YP_006350590.1| - 5.2e-144 479.2 0.0 5.8e-144 479.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|389848351|ref|YP_006350590.1| - 1.3e-10 40.8 2.7 9.6e-10 38.0 1.8 2.2 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|389848351|ref|YP_006350590.1| - 2.7e-06 26.3 0.0 4.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|389848351|ref|YP_006350590.1| - 3.9e-06 26.0 0.0 4.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.6 gi|389848351|ref|YP_006350590.1| - 5.2e-06 25.0 0.0 2.9e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|389848351|ref|YP_006350590.1| - 3.1e-05 23.2 0.2 0.00011 21.4 0.2 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase B5 PF03484.10 gi|389848352|ref|YP_006350591.1| - 3e-17 62.1 0.3 3.4e-15 55.6 0.2 2.5 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|389848352|ref|YP_006350591.1| - 9.4e-12 44.7 0.0 1.5e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|389848352|ref|YP_006350591.1| - 0.0064 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|662859598|ref|YP_006350592.2| - 3.1e-79 265.6 0.0 3.9e-79 265.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|662859598|ref|YP_006350592.2| - 4e-06 25.8 0.6 0.0036 16.1 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|662859598|ref|YP_006350592.2| - 0.00036 20.7 1.2 0.0025 18.0 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|662859598|ref|YP_006350592.2| - 0.00052 19.6 0.6 0.0029 17.2 0.1 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|662859598|ref|YP_006350592.2| - 0.0064 16.1 0.0 0.34 10.6 0.0 2.4 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.12 gi|662859598|ref|YP_006350592.2| - 0.018 14.5 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit tRNA-synt_2b PF00587.20 gi|662859598|ref|YP_006350592.2| - 0.018 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) DAO PF01266.19 gi|389848355|ref|YP_006350594.1| - 6.6e-83 278.5 9.7 7.5e-83 278.3 6.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|389848355|ref|YP_006350594.1| - 1.1e-08 35.4 0.2 0.0052 16.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|389848355|ref|YP_006350594.1| - 1.6e-08 33.8 13.6 7.8e-08 31.5 9.4 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|389848355|ref|YP_006350594.1| - 1.3e-07 31.7 2.7 0.00055 19.8 1.3 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|389848355|ref|YP_006350594.1| - 4.9e-07 29.6 2.2 4.9e-07 29.6 1.6 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|389848355|ref|YP_006350594.1| - 6.9e-07 29.5 2.3 1.1e-05 25.7 1.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389848355|ref|YP_006350594.1| - 6.9e-05 21.4 0.9 0.003 16.0 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|389848355|ref|YP_006350594.1| - 7.3e-05 22.0 8.4 0.00017 20.8 5.8 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|389848355|ref|YP_006350594.1| - 0.0014 17.7 0.4 0.0014 17.7 0.3 1.7 2 0 0 2 2 2 1 Thi4 family Amino_oxidase PF01593.19 gi|389848355|ref|YP_006350594.1| - 0.0018 17.4 3.9 0.3 10.1 1.1 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.1 gi|389848355|ref|YP_006350594.1| - 0.0024 18.0 0.7 0.0048 17.1 0.5 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|389848355|ref|YP_006350594.1| - 0.003 16.6 8.3 0.019 14.0 3.2 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|389848355|ref|YP_006350594.1| - 0.042 13.6 3.3 1.5 8.6 0.1 2.8 2 1 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|389848355|ref|YP_006350594.1| - 0.063 12.9 2.0 0.12 12.0 1.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|389848355|ref|YP_006350594.1| - 0.093 12.1 1.9 0.15 11.3 1.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|389848355|ref|YP_006350594.1| - 0.2 11.0 1.6 0.39 10.1 1.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|389848355|ref|YP_006350594.1| - 0.2 10.2 1.9 0.31 9.6 1.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_10 PF13460.1 gi|389848355|ref|YP_006350594.1| - 2.4 8.1 7.0 11 5.9 1.4 2.7 3 0 0 3 3 3 0 NADH(P)-binding Lycopene_cycl PF05834.7 gi|389848355|ref|YP_006350594.1| - 5.5 5.7 5.4 1.3 7.8 1.5 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.17 gi|389848355|ref|YP_006350594.1| - 6.6 5.4 8.3 1.8 7.3 3.5 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A OCD_Mu_crystall PF02423.10 gi|389848356|ref|YP_006350595.1| - 7.5e-58 195.7 4.2 8.2e-57 192.3 2.9 1.9 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|389848356|ref|YP_006350595.1| - 0.055 13.5 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase tRNA-synt_1b PF00579.20 gi|389848357|ref|YP_006350596.1| - 4.9e-40 137.4 0.0 1.2e-22 80.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.12 gi|389848358|ref|YP_006350597.1| - 1e-36 124.5 0.0 4.6e-24 84.0 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|389848358|ref|YP_006350597.1| - 1.3e-29 101.4 0.0 1.4e-14 53.3 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Auto_anti-p27 PF06677.7 gi|389848359|ref|YP_006350598.1| - 1.3e-07 31.2 6.4 2.9e-06 26.9 0.1 3.8 4 1 0 4 4 4 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|389848359|ref|YP_006350598.1| - 2.6e-07 30.0 0.9 3.2e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|389848359|ref|YP_006350598.1| - 3.6e-07 29.5 0.0 4.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 zf-TFIIB PF13453.1 gi|389848359|ref|YP_006350598.1| - 0.72 9.0 6.5 0.19 10.9 1.3 2.5 2 1 0 2 2 2 0 Transcription factor zinc-finger HAD_2 PF13419.1 gi|389848360|ref|YP_006350599.1| - 3.4e-25 89.2 0.5 4.1e-25 89.0 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389848360|ref|YP_006350599.1| - 1.1e-15 58.5 0.8 1.2e-14 55.2 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|389848360|ref|YP_006350599.1| - 1.3e-09 37.5 0.1 2.5e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|389848360|ref|YP_006350599.1| - 2.3e-06 27.9 0.1 3.1e-06 27.4 0.1 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF218 PF02698.12 gi|389848360|ref|YP_006350599.1| - 0.027 13.9 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 DUF218 domain Hydrolase_6 PF13344.1 gi|389848360|ref|YP_006350599.1| - 0.029 14.2 0.2 0.36 10.7 0.1 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|389848360|ref|YP_006350599.1| - 0.034 13.6 0.2 0.082 12.4 0.1 1.7 2 1 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF1917 PF08939.5 gi|389848361|ref|YP_006350600.1| - 7.9e-19 68.3 0.1 9.9e-19 68.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) DEAD PF00270.24 gi|662859599|ref|YP_006350601.2| - 2.1e-28 98.9 0.0 2.8e-27 95.2 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|662859599|ref|YP_006350601.2| - 2.2e-25 89.5 0.0 3.1e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|662859599|ref|YP_006350601.2| - 1.1e-09 38.0 0.0 3.3e-09 36.4 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|662859599|ref|YP_006350601.2| - 9.8e-08 32.0 0.0 2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|662859599|ref|YP_006350601.2| - 3.8e-07 30.1 2.1 8.3e-07 29.0 0.4 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|662859599|ref|YP_006350601.2| - 0.0055 16.2 0.0 0.018 14.6 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.18 gi|662859599|ref|YP_006350601.2| - 0.015 14.1 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain TrmB PF01978.14 gi|662859599|ref|YP_006350601.2| - 0.064 12.9 0.0 0.24 11.1 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_10 PF12846.2 gi|662859599|ref|YP_006350601.2| - 0.091 12.1 0.0 0.93 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain Radical_SAM PF04055.16 gi|662859600|ref|YP_006350602.2| - 1.6e-14 54.3 0.0 2.5e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily E1_dh PF00676.15 gi|389848364|ref|YP_006350603.1| - 6.7e-88 294.2 0.0 1.1e-87 293.5 0.0 1.3 2 0 0 2 2 2 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|389848364|ref|YP_006350603.1| - 8.3e-08 31.4 0.0 1.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|389848364|ref|YP_006350603.1| - 2.3e-06 26.7 0.0 3.4e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|389848364|ref|YP_006350603.1| - 0.0011 18.5 0.0 0.0032 17.0 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|389848364|ref|YP_006350603.1| - 0.087 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain BPL_C PF02237.12 gi|389848364|ref|YP_006350603.1| - 0.22 11.2 0.7 0.63 9.7 0.5 1.7 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain Transket_pyr PF02779.19 gi|389848365|ref|YP_006350604.1| - 4.4e-46 156.6 0.0 5.9e-46 156.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|389848365|ref|YP_006350604.1| - 5.2e-40 136.2 0.3 1.6e-39 134.6 0.2 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|389848366|ref|YP_006350605.1| - 2.3e-93 311.7 0.0 3.1e-93 311.3 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|389848366|ref|YP_006350605.1| - 5.1e-24 83.7 1.4 1.2e-23 82.5 1.0 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|389848366|ref|YP_006350605.1| - 8.1e-22 76.5 4.5 2.9e-16 58.8 0.3 2.6 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|389848366|ref|YP_006350605.1| - 3.6e-06 26.5 6.9 0.0045 16.6 0.0 3.4 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|389848366|ref|YP_006350605.1| - 8.7e-05 21.8 3.6 0.012 14.7 2.3 3.0 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|389848366|ref|YP_006350605.1| - 0.00081 19.0 0.1 0.0029 17.2 0.1 2.0 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|389848366|ref|YP_006350605.1| - 0.01 16.1 0.4 0.095 13.0 0.1 2.6 1 1 1 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.1 gi|389848366|ref|YP_006350605.1| - 0.025 14.2 0.1 0.062 13.0 0.1 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Pyr_redox_2 PF07992.9 gi|389848367|ref|YP_006350606.1| - 2.9e-44 151.3 9.5 7.8e-43 146.7 6.6 3.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|389848367|ref|YP_006350606.1| - 7e-38 129.0 1.2 1.9e-37 127.6 0.8 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|389848367|ref|YP_006350606.1| - 4.4e-21 75.0 8.0 1.3e-19 70.3 0.4 3.2 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|389848367|ref|YP_006350606.1| - 1e-11 44.3 10.8 0.00025 20.0 0.3 4.3 4 0 0 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.17 gi|389848367|ref|YP_006350606.1| - 1.1e-11 44.2 3.6 8.7e-08 31.4 1.4 2.9 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|389848367|ref|YP_006350606.1| - 6.7e-10 38.3 6.7 3e-07 29.6 0.4 2.9 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|389848367|ref|YP_006350606.1| - 5.4e-09 35.6 3.1 9.2e-08 31.5 0.3 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|389848367|ref|YP_006350606.1| - 9e-09 35.6 3.6 3.8e-07 30.3 1.1 2.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|389848367|ref|YP_006350606.1| - 3.4e-08 32.3 6.3 0.00018 20.0 0.1 3.6 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|389848367|ref|YP_006350606.1| - 2.8e-07 30.4 0.9 0.00052 19.9 0.2 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|389848367|ref|YP_006350606.1| - 2.9e-06 26.5 9.8 0.00087 18.4 0.4 3.2 2 1 1 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|389848367|ref|YP_006350606.1| - 1.7e-05 25.0 0.2 0.025 14.8 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|389848367|ref|YP_006350606.1| - 7.5e-05 22.1 3.6 0.00053 19.4 0.3 2.5 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|389848367|ref|YP_006350606.1| - 0.00011 21.4 3.3 0.03 13.4 0.1 3.0 3 0 0 3 3 3 2 Thi4 family 3HCDH_N PF02737.13 gi|389848367|ref|YP_006350606.1| - 0.0005 19.7 5.4 0.025 14.2 0.1 2.6 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|389848367|ref|YP_006350606.1| - 0.0016 17.4 1.0 0.28 10.0 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|389848367|ref|YP_006350606.1| - 0.0054 16.3 2.8 0.014 14.9 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|389848367|ref|YP_006350606.1| - 0.0077 16.2 0.4 0.21 11.5 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_9 PF13454.1 gi|389848367|ref|YP_006350606.1| - 0.0077 16.0 0.4 6.5 6.5 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding CPSase_L_chain PF00289.17 gi|389848367|ref|YP_006350606.1| - 0.0085 16.1 0.2 50 4.0 0.0 3.9 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain K_oxygenase PF13434.1 gi|389848367|ref|YP_006350606.1| - 0.0088 14.9 0.0 2.5 6.9 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) XdhC_C PF13478.1 gi|389848367|ref|YP_006350606.1| - 0.054 13.8 0.7 0.54 10.5 0.0 2.6 3 0 0 3 3 2 0 XdhC Rossmann domain Amidohydro_2 PF04909.9 gi|389848367|ref|YP_006350606.1| - 0.088 12.3 0.7 0.15 11.5 0.5 1.4 1 0 0 1 1 1 0 Amidohydrolase Trp_halogenase PF04820.9 gi|389848367|ref|YP_006350606.1| - 0.11 11.0 3.7 0.21 10.1 0.1 2.4 2 1 0 2 2 2 0 Tryptophan halogenase YiaAB PF05360.9 gi|662859601|ref|YP_006350607.2| - 0.095 12.2 3.6 3 7.4 0.3 2.4 2 1 0 2 2 2 0 yiaA/B two helix domain HAD PF12710.2 gi|389848369|ref|YP_006350608.1| - 2.8e-21 76.5 0.1 3.4e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|389848369|ref|YP_006350608.1| - 5.9e-15 56.2 0.1 6.1e-10 39.8 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|389848369|ref|YP_006350608.1| - 7.6e-14 51.9 0.1 2.3e-09 37.1 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|389848369|ref|YP_006350608.1| - 2.5e-10 40.8 0.2 7.8e-09 35.9 0.1 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|389848369|ref|YP_006350608.1| - 0.00011 21.4 0.0 0.03 13.5 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase UMPH-1 PF05822.7 gi|389848369|ref|YP_006350608.1| - 0.015 14.6 0.0 0.021 14.1 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) S6PP PF05116.8 gi|389848369|ref|YP_006350608.1| - 0.028 13.7 0.1 0.061 12.6 0.0 1.7 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.1 gi|389848369|ref|YP_006350608.1| - 0.034 14.0 0.0 0.23 11.3 0.0 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|389848369|ref|YP_006350608.1| - 0.047 13.8 0.1 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Pecanex_C PF05041.10 gi|389848370|ref|YP_006350609.1| - 0.045 12.7 0.0 0.057 12.4 0.0 1.3 1 0 0 1 1 1 0 Pecanex protein (C-terminus) Phage_sheath_1 PF04984.9 gi|389848370|ref|YP_006350609.1| - 0.062 11.7 0.0 0.066 11.6 0.0 1.1 1 0 0 1 1 1 0 Phage tail sheath protein DUF835 PF05763.7 gi|389848371|ref|YP_006350610.1| - 0.00031 20.3 0.0 0.0021 17.5 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF835) DUF1918 PF08940.6 gi|389848371|ref|YP_006350610.1| - 0.0052 16.0 0.2 0.013 14.8 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) 2-Hacid_dh_C PF02826.14 gi|662859602|ref|YP_006350611.2| - 2e-58 196.4 0.0 3.9e-58 195.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|662859602|ref|YP_006350611.2| - 1.2e-35 121.9 1.1 2.7e-35 120.7 0.5 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ELFV_dehydrog PF00208.16 gi|662859602|ref|YP_006350611.2| - 0.001 18.7 0.0 0.0029 17.2 0.0 1.8 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACT PF01842.20 gi|662859602|ref|YP_006350611.2| - 0.0014 18.0 0.2 0.019 14.4 0.0 2.8 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.10 gi|662859602|ref|YP_006350611.2| - 0.0032 17.3 0.5 0.032 14.0 0.0 2.9 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|662859602|ref|YP_006350611.2| - 0.0051 16.7 0.2 0.055 13.4 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|662859602|ref|YP_006350611.2| - 0.021 15.1 0.0 0.066 13.4 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|662859602|ref|YP_006350611.2| - 0.025 14.9 0.3 0.53 10.7 0.0 3.2 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|662859602|ref|YP_006350611.2| - 0.035 13.7 0.0 0.094 12.3 0.0 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|662859602|ref|YP_006350611.2| - 0.043 13.9 0.4 0.25 11.5 0.0 2.4 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PALP PF00291.20 gi|389848373|ref|YP_006350612.1| - 1.5e-65 221.4 1.3 1.7e-65 221.2 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|389848373|ref|YP_006350612.1| - 0.038 14.0 0.0 2.1 8.4 0.0 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TrmB PF01978.14 gi|662859603|ref|YP_006350613.2| - 9.9e-15 54.0 0.0 1.3e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|662859603|ref|YP_006350613.2| - 3.3e-07 29.8 0.1 4.4e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|662859603|ref|YP_006350613.2| - 3.9e-05 23.2 0.0 6.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|662859603|ref|YP_006350613.2| - 0.00016 20.9 0.0 0.00024 20.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|662859603|ref|YP_006350613.2| - 0.00032 20.2 0.0 0.0087 15.6 0.0 2.0 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_IclR PF09339.5 gi|662859603|ref|YP_006350613.2| - 0.00067 19.2 0.1 0.0016 17.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|662859603|ref|YP_006350613.2| - 0.00068 19.9 0.0 0.00098 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|662859603|ref|YP_006350613.2| - 0.0025 17.5 0.2 0.0042 16.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|662859603|ref|YP_006350613.2| - 0.0084 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MerR-DNA-bind PF09278.6 gi|662859603|ref|YP_006350613.2| - 0.02 15.2 0.0 3.9 7.9 0.0 2.3 2 0 0 2 2 2 0 MerR, DNA binding TFIIE_alpha PF02002.12 gi|662859603|ref|YP_006350613.2| - 0.037 13.5 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|662859603|ref|YP_006350613.2| - 0.047 13.1 0.2 0.09 12.2 0.1 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF296 PF03479.10 gi|389848375|ref|YP_006350614.1| - 0.086 12.4 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF296) Glyco_hydro_56 PF01630.13 gi|389848376|ref|YP_006350615.1| - 0.044 12.4 0.1 0.062 11.9 0.0 1.2 1 0 0 1 1 1 0 Hyaluronidase Tape_meas_lam_C PF09718.5 gi|389848376|ref|YP_006350615.1| - 0.13 12.1 0.3 0.76 9.7 0.1 2.0 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) CstA PF02554.9 gi|389848379|ref|YP_006350618.1| - 4.2e-127 423.8 20.9 4.2e-127 423.8 14.5 1.9 2 1 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|389848379|ref|YP_006350618.1| - 5.9e-32 110.6 2.4 5.9e-32 110.6 1.7 3.9 5 0 0 5 5 5 1 C-terminal domain on CstA (DUF4161) Pox_P21 PF05313.7 gi|389848379|ref|YP_006350618.1| - 0.066 12.4 6.4 0.3 10.3 3.2 2.5 3 0 0 3 3 3 0 Poxvirus P21 membrane protein ArsA_ATPase PF02374.10 gi|389848380|ref|YP_006350619.1| - 3.2e-73 246.4 0.0 3.9e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|389848380|ref|YP_006350619.1| - 1.2e-14 54.1 0.0 1.8e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|389848380|ref|YP_006350619.1| - 1.3e-06 28.4 0.0 1.8e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|389848380|ref|YP_006350619.1| - 0.0019 17.7 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain Fer4_NifH PF00142.13 gi|389848380|ref|YP_006350619.1| - 0.0045 16.2 0.0 0.0085 15.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|389848380|ref|YP_006350619.1| - 0.0059 16.0 0.3 0.022 14.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|389848380|ref|YP_006350619.1| - 0.0098 15.5 0.0 0.07 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|389848380|ref|YP_006350619.1| - 0.024 14.0 0.3 0.052 12.9 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein KaiC PF06745.8 gi|389848380|ref|YP_006350619.1| - 0.029 13.5 0.1 0.054 12.5 0.1 1.5 1 1 0 1 1 1 0 KaiC Tir_receptor_N PF07490.6 gi|389848380|ref|YP_006350619.1| - 0.062 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus PhoH PF02562.11 gi|389848380|ref|YP_006350619.1| - 0.067 12.4 0.1 0.12 11.6 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|389848380|ref|YP_006350619.1| - 0.1 13.4 0.6 0.53 11.1 0.4 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|389848380|ref|YP_006350619.1| - 0.11 11.9 0.3 0.27 10.6 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|389848380|ref|YP_006350619.1| - 0.13 11.1 0.2 0.21 10.4 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|389848380|ref|YP_006350619.1| - 0.31 11.3 2.7 1.1 9.5 0.8 2.8 2 1 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|389848380|ref|YP_006350619.1| - 0.5 9.4 2.5 0.92 8.5 0.2 2.2 2 1 1 3 3 3 0 ATPase MipZ AAA_33 PF13671.1 gi|389848380|ref|YP_006350619.1| - 5.4 6.8 7.1 4.9 7.0 1.5 3.3 2 2 1 3 3 3 0 AAA domain Cytochrom_B559a PF00284.15 gi|389848381|ref|YP_006350620.1| - 0.0064 15.9 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.14 gi|389848382|ref|YP_006350621.1| - 7.4e-46 155.8 0.3 9.4e-46 155.4 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|389848382|ref|YP_006350621.1| - 1.1e-19 69.9 0.0 1.9e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain Zeta_toxin PF06414.7 gi|389848382|ref|YP_006350621.1| - 0.00022 20.3 0.2 0.0024 17.0 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin GTP_EFTU PF00009.22 gi|389848382|ref|YP_006350621.1| - 0.0073 15.7 0.7 0.11 11.9 0.6 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.4 gi|389848382|ref|YP_006350621.1| - 0.009 14.6 0.0 0.015 13.9 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain UPF0079 PF02367.12 gi|389848382|ref|YP_006350621.1| - 0.02 14.5 0.3 0.045 13.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 CbiA PF01656.18 gi|389848382|ref|YP_006350621.1| - 0.028 13.8 0.2 0.042 13.2 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|389848382|ref|YP_006350621.1| - 0.032 14.2 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|389848382|ref|YP_006350621.1| - 0.046 12.9 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|389848382|ref|YP_006350621.1| - 0.11 11.9 0.1 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|389848382|ref|YP_006350621.1| - 0.14 11.8 0.4 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|389848382|ref|YP_006350621.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Vma12 PF11712.3 gi|389848383|ref|YP_006350622.1| - 0.3 10.7 1.6 0.33 10.6 1.1 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF4191 PF13829.1 gi|389848383|ref|YP_006350622.1| - 0.63 9.1 2.2 0.72 8.9 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) UPRTase PF14681.1 gi|389848384|ref|YP_006350623.1| - 7.5e-57 191.8 0.0 8.7e-57 191.6 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|389848384|ref|YP_006350623.1| - 5.5e-08 32.5 0.2 8.3e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF4548 PF15081.1 gi|389848385|ref|YP_006350624.1| - 0.033 13.7 0.1 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4548) DZR PF12773.2 gi|389848385|ref|YP_006350624.1| - 0.056 13.2 0.4 0.13 12.0 0.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon NMT1 PF09084.6 gi|389848386|ref|YP_006350625.1| - 4.6e-11 42.7 0.6 1.6e-10 40.9 0.4 2.1 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|389848386|ref|YP_006350625.1| - 4.2e-07 29.5 1.9 7.8e-07 28.7 1.3 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|389848386|ref|YP_006350625.1| - 0.00094 18.9 1.2 0.0025 17.6 0.9 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_2 PF13379.1 gi|389848386|ref|YP_006350625.1| - 0.0022 17.3 1.3 0.0033 16.8 0.1 1.8 2 1 0 2 2 2 1 NMT1-like family UCR_Fe-S_N PF10399.4 gi|389848386|ref|YP_006350625.1| - 0.05 12.7 0.8 0.11 11.6 0.6 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Orbi_VP6 PF01516.11 gi|389848386|ref|YP_006350625.1| - 0.52 9.3 5.0 0.78 8.7 3.5 1.2 1 0 0 1 1 1 0 Orbivirus helicase VP6 DUF1850 PF08905.6 gi|389848387|ref|YP_006350626.1| - 2.9e-20 71.8 0.0 4.5e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.7 gi|389848388|ref|YP_006350627.1| - 3e-84 283.0 59.6 1e-56 192.3 20.3 3.2 3 0 0 3 3 3 2 DctM-like transporters UPF0029 PF01205.14 gi|662859604|ref|YP_006350628.2| - 3.5e-33 113.5 0.0 4.6e-33 113.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|662859604|ref|YP_006350628.2| - 4.4e-12 45.4 0.6 7.4e-12 44.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|662859604|ref|YP_006350628.2| - 0.00066 19.4 0.0 0.0015 18.3 0.0 1.6 2 0 0 2 2 2 1 Elongation factor G C-terminus ACT_7 PF13840.1 gi|389848390|ref|YP_006350629.1| - 1.3e-05 24.5 0.1 3.2e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|389848390|ref|YP_006350629.1| - 7.3e-05 22.1 1.3 0.00054 19.3 0.1 2.7 2 1 0 2 2 2 1 ACT domain CM_2 PF01817.16 gi|389848390|ref|YP_006350629.1| - 0.091 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Chorismate mutase type II Lar_restr_allev PF14354.1 gi|389848391|ref|YP_006350630.1| - 0.023 15.0 0.1 0.053 13.8 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|389848391|ref|YP_006350630.1| - 0.062 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon IGPD PF00475.13 gi|389848392|ref|YP_006350631.1| - 5.5e-62 207.9 1.9 7.2e-62 207.5 1.3 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|389848393|ref|YP_006350632.1| - 2.3e-76 256.0 2.5 2.6e-76 255.8 1.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|389848393|ref|YP_006350632.1| - 1.2e-10 40.7 0.1 1.3e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|389848393|ref|YP_006350632.1| - 2.3e-08 33.5 4.5 5.5e-05 22.5 0.1 3.4 1 1 3 4 4 4 2 PcrB family IGPS PF00218.16 gi|389848393|ref|YP_006350632.1| - 1.7e-07 30.5 1.0 0.00066 18.8 0.0 3.4 2 2 2 4 4 4 2 Indole-3-glycerol phosphate synthase DHO_dh PF01180.16 gi|389848393|ref|YP_006350632.1| - 4.6e-07 29.0 0.2 0.00033 19.7 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|389848393|ref|YP_006350632.1| - 7.9e-07 28.4 3.8 0.001 18.2 0.1 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|389848393|ref|YP_006350632.1| - 1.1e-06 28.0 9.4 1.1e-05 24.7 2.3 2.2 1 1 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|389848393|ref|YP_006350632.1| - 0.00022 20.3 0.6 0.014 14.5 0.1 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|389848393|ref|YP_006350632.1| - 0.0011 17.6 0.2 0.03 12.8 0.0 2.2 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.9 gi|389848393|ref|YP_006350632.1| - 0.0082 15.1 0.1 1.5 7.7 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase B12-binding PF02310.14 gi|389848393|ref|YP_006350632.1| - 0.021 14.7 2.9 1.2 8.9 0.1 2.7 2 1 1 3 3 3 0 B12 binding domain Ribul_P_3_epim PF00834.14 gi|389848393|ref|YP_006350632.1| - 0.059 12.4 1.1 1.4 8.0 0.1 2.4 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PQQ PF01011.16 gi|389848393|ref|YP_006350632.1| - 0.078 12.5 0.1 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 PQQ enzyme repeat IMPDH PF00478.20 gi|389848393|ref|YP_006350632.1| - 0.13 11.1 1.9 1.9 7.2 0.2 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|389848393|ref|YP_006350632.1| - 0.22 10.3 8.5 2.5 6.8 5.3 2.3 1 1 1 2 2 2 0 FMN-dependent dehydrogenase PGM_PMM_I PF02878.11 gi|389848395|ref|YP_006350634.1| - 1e-34 118.9 0.0 1.8e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|389848395|ref|YP_006350634.1| - 1.3e-27 96.1 0.1 3.1e-27 94.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|389848395|ref|YP_006350634.1| - 1.2e-16 60.3 0.2 7.5e-16 57.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|389848395|ref|YP_006350634.1| - 4.1e-12 46.1 0.0 1.3e-11 44.4 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acetyltransf_1 PF00583.19 gi|389848396|ref|YP_006350635.1| - 6.8e-13 48.4 0.0 1.1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|389848396|ref|YP_006350635.1| - 1.7e-09 37.7 0.0 2.4e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|389848396|ref|YP_006350635.1| - 3.1e-07 30.4 0.0 4.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|389848396|ref|YP_006350635.1| - 3.5e-07 30.2 0.0 5.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|389848396|ref|YP_006350635.1| - 1.1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|389848396|ref|YP_006350635.1| - 3.4e-05 24.0 0.0 4.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF397 PF04149.7 gi|389848396|ref|YP_006350635.1| - 0.0024 17.3 0.0 0.0056 16.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF397) Acetyltransf_4 PF13420.1 gi|389848396|ref|YP_006350635.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|389848396|ref|YP_006350635.1| - 0.077 12.8 0.0 0.42 10.5 0.0 2.0 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase PRA-CH PF01502.13 gi|389848398|ref|YP_006350637.1| - 2.2e-36 123.3 0.4 3.5e-36 122.6 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.6 gi|389848399|ref|YP_006350638.1| - 5e-16 58.9 0.0 1.8e-15 57.1 0.0 1.8 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|389848399|ref|YP_006350638.1| - 1.7e-10 41.0 8.4 1.7e-10 41.0 5.8 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family Response_reg PF00072.19 gi|389848400|ref|YP_006350639.1| - 3.1e-21 75.4 0.0 3.7e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|389848401|ref|YP_006350640.1| - 2.1e-16 59.9 0.0 4.7e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|389848401|ref|YP_006350640.1| - 6.7e-13 49.3 0.2 1e-12 48.7 0.1 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|389848401|ref|YP_006350640.1| - 2.5e-07 30.8 0.1 4.7e-07 29.9 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|389848401|ref|YP_006350640.1| - 2.4e-06 27.7 0.0 3.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 GAF domain DUF1542 PF07564.6 gi|389848401|ref|YP_006350640.1| - 0.052 13.5 0.8 0.052 13.5 0.5 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) AAA_31 PF13614.1 gi|389848401|ref|YP_006350640.1| - 0.15 12.0 0.3 0.85 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain RHH_1 PF01402.16 gi|389848402|ref|YP_006350641.1| - 0.041 13.7 0.2 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family YlqD PF11068.3 gi|389848402|ref|YP_006350641.1| - 0.077 13.0 0.6 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 YlqD protein DUF3897 PF13036.1 gi|389848402|ref|YP_006350641.1| - 0.15 11.6 0.7 0.4 10.2 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3897) Phage_integrase PF00589.17 gi|389848403|ref|YP_006350642.1| - 7.8e-20 71.2 0.1 9.6e-19 67.6 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family DUF350 PF03994.9 gi|389848407|ref|YP_006350646.1| - 0.4 10.4 0.1 0.4 10.4 0.1 2.0 2 1 0 2 2 2 0 Domain of Unknown Function (DUF350) Phage_integrase PF00589.17 gi|389848409|ref|YP_006350648.1| - 2.4e-14 53.3 0.0 2.7e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|389848409|ref|YP_006350648.1| - 2.4e-05 24.1 0.0 3.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Integrase Pro_isomerase PF00160.16 gi|389848410|ref|YP_006350649.1| - 0.03 14.5 0.1 0.086 13.0 0.0 1.8 2 1 0 2 2 2 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD T2SI PF02501.12 gi|389848410|ref|YP_006350649.1| - 0.052 13.5 0.1 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein I DUF896 PF05979.7 gi|389848411|ref|YP_006350650.1| - 0.12 11.9 0.8 0.33 10.5 0.2 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) HATPase_c_3 PF13589.1 gi|389848412|ref|YP_006350651.1| - 9.7e-08 31.7 0.0 2.7e-07 30.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|389848412|ref|YP_006350651.1| - 0.056 13.1 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N6_N4_Mtase PF01555.13 gi|389848413|ref|YP_006350652.1| - 4.3e-16 59.1 0.2 3.8e-10 39.6 0.0 2.7 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|389848413|ref|YP_006350652.1| - 3.7e-08 33.4 0.0 1.5e-07 31.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|389848413|ref|YP_006350652.1| - 0.022 14.3 0.0 4 6.9 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|389848413|ref|YP_006350652.1| - 0.047 13.1 0.1 1.1 8.6 0.0 2.5 2 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase FUR PF01475.14 gi|389848414|ref|YP_006350653.1| - 0.0012 18.7 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|389848414|ref|YP_006350653.1| - 0.0027 17.4 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|389848414|ref|YP_006350653.1| - 0.015 15.0 0.1 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HATPase_c_3 PF13589.1 gi|389848416|ref|YP_006350655.1| - 4.1e-05 23.2 0.1 0.00021 20.9 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF445 PF04286.7 gi|389848416|ref|YP_006350655.1| - 0.0096 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF445) HATPase_c PF02518.21 gi|389848416|ref|YP_006350655.1| - 0.063 13.0 1.4 0.25 11.0 0.2 2.5 2 1 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ribosomal_S15 PF00312.17 gi|389848417|ref|YP_006350656.1| - 0.048 13.4 0.5 0.23 11.2 0.3 2.0 1 1 0 1 1 1 0 Ribosomal protein S15 PhnA_Zn_Ribbon PF08274.7 gi|389848419|ref|YP_006350658.1| - 0.0052 16.5 0.8 0.0094 15.7 0.6 1.4 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.7 gi|389848419|ref|YP_006350658.1| - 0.012 15.3 0.1 0.016 14.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|389848419|ref|YP_006350658.1| - 0.024 14.1 0.5 2.5 7.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Rop PF01815.11 gi|389848419|ref|YP_006350658.1| - 0.064 12.7 0.4 0.068 12.6 0.3 1.1 1 0 0 1 1 1 0 Rop protein Zn_Tnp_IS1595 PF12760.2 gi|389848419|ref|YP_006350658.1| - 0.066 13.0 0.6 0.11 12.2 0.4 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|389848419|ref|YP_006350658.1| - 0.095 12.6 3.3 2.5 8.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|389848419|ref|YP_006350658.1| - 0.12 12.3 0.5 2.7 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF4379 PF14311.1 gi|389848419|ref|YP_006350658.1| - 0.45 10.3 3.6 1.3 8.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Fer4_4 PF12800.2 gi|389848419|ref|YP_006350658.1| - 0.66 10.4 4.0 3.7 8.1 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|389848419|ref|YP_006350658.1| - 6.8 6.7 5.8 7.6 6.5 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain D5_N PF08706.6 gi|389848420|ref|YP_006350659.1| - 0.008 16.2 1.3 0.8 9.7 0.0 2.9 3 0 0 3 3 3 2 D5 N terminal like DUF690 PF05108.8 gi|389848420|ref|YP_006350659.1| - 0.26 9.6 0.0 0.39 9.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF690) Fer2 PF00111.22 gi|389848422|ref|YP_006350661.1| - 1.9e-13 49.9 0.3 3e-13 49.3 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|389848422|ref|YP_006350661.1| - 0.082 12.7 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|389848423|ref|YP_006350662.1| - 1e-68 231.4 17.3 1.4e-68 231.0 12.0 1.1 1 0 0 1 1 1 1 Phosphate transporter family Cys_Met_Meta_PP PF01053.15 gi|389848424|ref|YP_006350663.1| - 1.6e-133 444.7 0.0 5.6e-132 439.6 0.0 2.0 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|389848424|ref|YP_006350663.1| - 2.7e-10 39.7 0.0 4.4e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|389848424|ref|YP_006350663.1| - 1.4e-06 27.5 1.1 2.2e-06 26.9 0.4 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|389848424|ref|YP_006350663.1| - 3.1e-05 22.8 0.5 6.4e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|389848424|ref|YP_006350663.1| - 0.00026 20.2 0.3 0.00071 18.8 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|389848424|ref|YP_006350663.1| - 0.015 13.8 0.0 0.021 13.3 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Abhydrolase_1 PF00561.15 gi|389848425|ref|YP_006350664.1| - 2.4e-22 79.6 0.0 3.1e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|389848425|ref|YP_006350664.1| - 9.9e-17 61.5 5.5 1.5e-16 61.0 3.8 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|389848425|ref|YP_006350664.1| - 0.0013 18.4 0.5 0.0028 17.4 0.2 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|389848425|ref|YP_006350664.1| - 0.0022 17.4 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Cys_Met_Meta_PP PF01053.15 gi|389848427|ref|YP_006350666.1| - 2.8e-131 437.3 0.0 3.2e-131 437.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|389848427|ref|YP_006350666.1| - 4.6e-06 25.8 0.0 6.5e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|389848427|ref|YP_006350666.1| - 0.0026 16.5 0.1 0.0041 15.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|389848427|ref|YP_006350666.1| - 0.0037 16.3 3.2 0.0074 15.3 2.2 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_10 PF04967.7 gi|389848428|ref|YP_006350667.1| - 2.1e-20 72.0 0.0 2.9e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|389848428|ref|YP_006350667.1| - 0.0002 20.9 0.2 0.00041 19.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|389848428|ref|YP_006350667.1| - 0.00067 18.9 0.2 0.0097 15.2 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|389848428|ref|YP_006350667.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|389848428|ref|YP_006350667.1| - 0.0024 17.2 0.5 0.004 16.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|389848428|ref|YP_006350667.1| - 0.0032 17.2 0.0 0.0082 15.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|389848428|ref|YP_006350667.1| - 0.0034 17.2 0.0 0.008 16.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|389848428|ref|YP_006350667.1| - 0.0035 16.8 0.2 0.0062 16.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|389848428|ref|YP_006350667.1| - 0.005 16.4 0.1 0.011 15.4 0.1 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|389848428|ref|YP_006350667.1| - 0.0063 15.9 0.2 0.085 12.3 0.1 2.5 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|389848428|ref|YP_006350667.1| - 0.011 14.9 0.9 0.03 13.6 0.6 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|389848428|ref|YP_006350667.1| - 0.014 14.9 0.2 0.052 13.1 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|389848428|ref|YP_006350667.1| - 0.016 15.0 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|389848428|ref|YP_006350667.1| - 0.02 14.5 0.0 0.04 13.6 0.0 1.6 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|389848428|ref|YP_006350667.1| - 0.067 12.6 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|389848428|ref|YP_006350667.1| - 0.085 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF746 PF05344.6 gi|389848428|ref|YP_006350667.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) p450 PF00067.17 gi|389848429|ref|YP_006350668.1| - 3.8e-89 299.3 0.0 4.6e-89 299.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Aminotran_5 PF00266.14 gi|389848430|ref|YP_006350669.1| - 5.6e-32 110.8 0.0 6.9e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|389848430|ref|YP_006350669.1| - 0.0051 15.8 0.3 0.022 13.8 0.2 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|389848430|ref|YP_006350669.1| - 0.067 12.1 0.0 0.11 11.3 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II DNA_ligase_aden PF01653.13 gi|389848431|ref|YP_006350670.1| - 1.1e-106 356.3 0.0 1.5e-106 355.9 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|389848431|ref|YP_006350670.1| - 3e-29 100.5 4.9 8.2e-29 99.1 3.4 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|389848431|ref|YP_006350670.1| - 1.2e-17 63.5 0.4 3.3e-14 52.4 0.1 4.1 4 1 0 4 4 4 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|389848431|ref|YP_006350670.1| - 2.1e-14 53.4 0.6 3.3e-10 39.9 0.1 3.3 2 1 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|389848431|ref|YP_006350670.1| - 1.4e-10 41.1 0.0 3.2e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.11 gi|389848431|ref|YP_006350670.1| - 1.5e-05 24.5 3.5 1.5e-05 24.5 2.4 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.18 gi|389848431|ref|YP_006350670.1| - 0.0049 16.5 0.0 3.6 7.4 0.0 3.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif PTCB-BRCT PF12738.2 gi|389848431|ref|YP_006350670.1| - 0.072 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 twin BRCT domain ABC2_membrane_2 PF12679.2 gi|389848432|ref|YP_006350671.1| - 7.9e-42 143.0 19.0 1e-41 142.6 13.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|389848432|ref|YP_006350671.1| - 1.8e-18 66.5 19.6 1.8e-18 66.5 13.6 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|389848432|ref|YP_006350671.1| - 4e-07 29.5 9.2 4e-07 29.5 6.4 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|389848432|ref|YP_006350671.1| - 8.3e-07 28.3 25.3 8.3e-07 28.3 17.5 2.1 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|389848433|ref|YP_006350672.1| - 9.2e-30 103.7 0.0 1.4e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|389848433|ref|YP_006350672.1| - 6e-12 46.1 0.0 1.6e-07 31.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|389848433|ref|YP_006350672.1| - 1.9e-06 28.2 0.0 3.9e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|389848433|ref|YP_006350672.1| - 0.00038 19.9 0.1 0.064 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_30 PF13604.1 gi|389848433|ref|YP_006350672.1| - 0.0017 17.9 0.1 0.019 14.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|389848433|ref|YP_006350672.1| - 0.0039 16.3 0.0 0.006 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|389848433|ref|YP_006350672.1| - 0.0053 16.2 0.1 0.0094 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|389848433|ref|YP_006350672.1| - 0.013 15.8 0.1 0.024 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|389848433|ref|YP_006350672.1| - 0.015 14.5 0.0 3.4 6.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|389848433|ref|YP_006350672.1| - 0.03 14.3 0.0 0.063 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|389848433|ref|YP_006350672.1| - 0.034 14.0 0.0 0.17 11.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|389848433|ref|YP_006350672.1| - 0.08 12.9 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase VIT1 PF01988.14 gi|389848435|ref|YP_006350674.1| - 2.2e-38 131.8 14.7 8.3e-22 77.7 0.9 2.0 1 1 1 2 2 2 2 VIT family LrgB PF04172.11 gi|389848435|ref|YP_006350674.1| - 0.02 14.0 1.1 0.02 14.0 0.8 1.9 2 1 0 2 2 2 0 LrgB-like family MCPsignal PF00015.16 gi|389848436|ref|YP_006350675.1| - 7.1e-47 159.6 55.1 2.7e-43 147.9 21.3 3.1 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|389848436|ref|YP_006350675.1| - 1.2e-06 28.8 0.7 8.8e-06 26.0 0.0 2.7 3 1 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|389848436|ref|YP_006350675.1| - 2.5e-06 27.4 7.0 6.3e-06 26.1 0.3 3.9 3 1 0 3 3 2 1 PAS fold PAS PF00989.19 gi|389848436|ref|YP_006350675.1| - 6.3e-05 22.7 0.0 0.00028 20.6 0.0 2.3 1 1 0 1 1 1 1 PAS fold TPR_MLP1_2 PF07926.7 gi|389848436|ref|YP_006350675.1| - 0.0026 17.4 6.8 0.0026 17.4 4.7 3.7 3 1 1 4 4 4 1 TPR/MLP1/MLP2-like protein DUF3450 PF11932.3 gi|389848436|ref|YP_006350675.1| - 0.0046 16.2 6.9 0.0046 16.2 4.8 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) HSBP1 PF06825.7 gi|389848436|ref|YP_006350675.1| - 0.0076 15.8 1.8 0.026 14.0 0.4 2.6 2 0 0 2 2 1 1 Heat shock factor binding protein 1 DUF948 PF06103.6 gi|389848436|ref|YP_006350675.1| - 0.0095 15.7 1.9 0.0095 15.7 1.3 4.8 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|389848436|ref|YP_006350675.1| - 0.012 15.5 8.4 0.012 15.5 5.8 3.1 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin-6_N PF09177.6 gi|389848436|ref|YP_006350675.1| - 0.073 13.4 27.9 0.25 11.7 1.5 5.2 3 2 3 6 6 6 0 Syntaxin 6, N-terminal DUF3584 PF12128.3 gi|389848436|ref|YP_006350675.1| - 0.1 9.8 29.3 0.14 9.4 20.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|389848436|ref|YP_006350675.1| - 0.12 12.1 35.7 0.025 14.3 1.7 4.8 2 2 1 4 4 4 0 Laminin Domain II Laminin_I PF06008.9 gi|389848436|ref|YP_006350675.1| - 0.14 11.4 29.0 1 8.6 8.4 3.6 1 1 2 3 3 3 0 Laminin Domain I RPW8 PF05659.6 gi|389848436|ref|YP_006350675.1| - 0.24 10.9 4.4 10 5.6 0.1 3.1 2 2 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 PhageMin_Tail PF10145.4 gi|389848436|ref|YP_006350675.1| - 0.25 10.9 32.2 0.16 11.6 9.5 4.1 2 1 1 3 3 3 0 Phage-related minor tail protein Tropomyosin_1 PF12718.2 gi|389848436|ref|YP_006350675.1| - 0.31 10.8 26.7 1.7 8.4 7.2 2.7 2 0 0 2 2 2 0 Tropomyosin like Prominin PF05478.6 gi|389848436|ref|YP_006350675.1| - 0.34 8.3 13.2 0.072 10.6 0.6 2.3 2 0 0 2 2 2 0 Prominin Spectrin PF00435.16 gi|389848436|ref|YP_006350675.1| - 0.43 10.9 19.5 1.4 9.2 1.8 4.1 1 1 5 6 6 6 0 Spectrin repeat AAA_13 PF13166.1 gi|389848436|ref|YP_006350675.1| - 0.55 8.6 25.0 0.4 9.0 6.3 2.1 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|389848436|ref|YP_006350675.1| - 0.65 9.8 22.9 0.85 9.4 2.8 4.4 2 2 0 3 3 3 0 Protein of unknown function (DUF1664) KAR9 PF08580.5 gi|389848436|ref|YP_006350675.1| - 1.1 7.4 6.9 0.14 10.3 1.8 1.6 2 0 0 2 2 2 0 Yeast cortical protein KAR9 DUF2229 PF09989.4 gi|389848436|ref|YP_006350675.1| - 1.5 8.2 8.3 0.43 10.0 0.7 2.5 2 1 1 3 3 3 0 CoA enzyme activase uncharacterised domain (DUF2229) Spc7 PF08317.6 gi|389848436|ref|YP_006350675.1| - 1.6 7.3 21.6 2.2 6.8 4.0 2.7 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF812 PF05667.6 gi|389848436|ref|YP_006350675.1| - 1.9 6.9 33.6 2.9 6.2 11.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) PhaC_N PF07167.8 gi|389848436|ref|YP_006350675.1| - 1.9 7.8 6.3 4.2 6.7 0.7 2.7 2 1 1 3 3 3 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IFT46_B_C PF12317.3 gi|389848436|ref|YP_006350675.1| - 2.4 7.4 10.2 3.7 6.8 0.6 3.0 1 1 2 3 3 3 0 Intraflagellar transport complex B protein 46 C terminal IncA PF04156.9 gi|389848436|ref|YP_006350675.1| - 2.7 7.5 21.9 0.055 13.0 3.5 3.2 2 1 0 2 2 2 0 IncA protein DHC_N1 PF08385.7 gi|389848436|ref|YP_006350675.1| - 3 6.1 6.5 1.6 7.0 0.3 2.0 1 1 1 2 2 2 0 Dynein heavy chain, N-terminal region 1 TMPIT PF07851.8 gi|389848436|ref|YP_006350675.1| - 4.3 6.3 10.5 4.5 6.2 1.2 2.4 2 1 0 2 2 2 0 TMPIT-like protein Atg14 PF10186.4 gi|389848436|ref|YP_006350675.1| - 4.8 6.0 12.8 3.8 6.3 1.4 2.6 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Cytochrom_C_2 PF01322.15 gi|389848436|ref|YP_006350675.1| - 6.6 7.3 25.3 3 8.4 3.1 3.5 1 1 1 3 3 3 0 Cytochrome C' UvrC_HhH_N PF08459.6 gi|389848437|ref|YP_006350676.1| - 2.5e-41 140.8 0.0 4.7e-41 139.9 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|389848437|ref|YP_006350676.1| - 1.1e-12 46.9 0.5 7e-08 31.7 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|389848437|ref|YP_006350676.1| - 1e-11 44.8 1.2 7.4e-11 42.0 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|389848437|ref|YP_006350676.1| - 1.3e-08 34.5 0.0 2.8e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.14 gi|389848437|ref|YP_006350676.1| - 5.5e-08 32.0 1.9 1.5e-07 30.6 1.3 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|389848437|ref|YP_006350676.1| - 1.9e-07 31.3 0.0 3.4e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain IMS_HHH PF11798.3 gi|389848437|ref|YP_006350676.1| - 5.7e-06 26.0 0.0 0.042 13.9 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif 5_3_exonuc PF01367.15 gi|389848437|ref|YP_006350676.1| - 0.0001 22.4 0.0 0.03 14.5 0.0 2.8 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|389848437|ref|YP_006350676.1| - 0.023 14.8 0.0 5.5 7.2 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|389848437|ref|YP_006350676.1| - 0.16 11.9 0.0 0.56 10.2 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif Ldh_1_N PF00056.18 gi|662859606|ref|YP_006350677.2| - 8e-39 132.6 0.2 1.1e-38 132.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|662859606|ref|YP_006350677.2| - 1.8e-31 109.1 0.0 2.7e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.19 gi|662859606|ref|YP_006350677.2| - 0.046 14.0 0.1 0.083 13.2 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Auto_anti-p27 PF06677.7 gi|662859607|ref|YP_006350678.2| - 1.3e-19 69.6 0.8 1.8e-19 69.2 0.6 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|662859607|ref|YP_006350678.2| - 0.00062 19.5 2.0 0.0012 18.6 1.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|662859607|ref|YP_006350678.2| - 0.0021 17.7 1.0 0.0034 17.0 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF3279 PF11682.3 gi|662859607|ref|YP_006350678.2| - 0.0095 15.5 0.7 0.018 14.6 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3279) GFA PF04828.9 gi|662859607|ref|YP_006350678.2| - 0.048 13.5 1.9 0.35 10.8 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|662859607|ref|YP_006350678.2| - 0.11 12.3 0.8 0.19 11.5 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|662859607|ref|YP_006350678.2| - 0.42 10.3 2.3 1.1 9.0 1.6 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Herpes_LMP1 PF05297.6 gi|662859607|ref|YP_006350678.2| - 0.59 8.9 3.3 0.63 8.9 2.3 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) zf-ribbon_3 PF13248.1 gi|662859607|ref|YP_006350678.2| - 1.1 8.5 3.6 3.9 6.8 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|662859607|ref|YP_006350678.2| - 1.8 8.3 4.6 4.9 6.9 3.2 1.7 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Usp PF00582.21 gi|389848440|ref|YP_006350679.1| - 1.6e-20 73.7 0.3 1.8e-20 73.5 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family ERCC4 PF02732.10 gi|389848441|ref|YP_006350680.1| - 7.1e-25 87.4 0.0 2.3e-24 85.7 0.0 1.9 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|389848441|ref|YP_006350680.1| - 1.1e-18 66.8 0.0 2.9e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|389848441|ref|YP_006350680.1| - 1.5e-16 60.3 0.0 4.6e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|389848441|ref|YP_006350680.1| - 8.2e-12 45.3 0.0 2.7e-11 43.6 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|389848441|ref|YP_006350680.1| - 9.1e-12 44.9 0.6 9.5e-11 41.7 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|389848441|ref|YP_006350680.1| - 2.4e-10 40.1 0.4 1.5e-09 37.6 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|389848441|ref|YP_006350680.1| - 2.6e-07 29.9 0.3 7.3e-05 22.2 0.0 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|389848441|ref|YP_006350680.1| - 0.0076 16.4 1.2 0.016 15.4 0.0 2.2 2 0 0 2 2 1 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|389848441|ref|YP_006350680.1| - 0.024 14.6 0.0 0.46 10.6 0.0 3.0 2 0 0 2 2 2 0 IMS family HHH motif P-II PF00543.17 gi|389848441|ref|YP_006350680.1| - 0.054 13.9 0.1 0.44 11.0 0.0 2.7 2 1 0 2 2 1 0 Nitrogen regulatory protein P-II Helicase_C_2 PF13307.1 gi|389848441|ref|YP_006350680.1| - 0.061 13.2 0.0 0.21 11.5 0.0 1.9 1 0 0 1 1 1 0 Helicase C-terminal domain DUF2072 PF09845.4 gi|662859608|ref|YP_006350681.2| - 6.9e-26 90.7 11.2 1.2e-13 51.1 0.0 3.2 3 1 0 3 3 3 2 Zn-ribbon containing protein (DUF2072) zf-C2H2_6 PF13912.1 gi|662859608|ref|YP_006350681.2| - 0.066 13.1 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger DUF1451 PF07295.6 gi|662859608|ref|YP_006350681.2| - 0.31 10.8 1.4 0.53 10.0 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zinc_ribbon_2 PF13240.1 gi|662859608|ref|YP_006350681.2| - 0.4 10.2 5.1 0.69 9.4 3.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|662859608|ref|YP_006350681.2| - 0.42 10.5 1.8 1.1 9.3 1.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain RRN9 PF10680.4 gi|662859608|ref|YP_006350681.2| - 2.6 7.8 5.4 1 9.1 1.6 2.0 2 0 0 2 2 2 0 RNA polymerase I specific transcription initiation factor SOBP PF15279.1 gi|662859608|ref|YP_006350681.2| - 4 7.7 18.2 5.2 7.3 12.6 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein zf-C2H2 PF00096.21 gi|662859608|ref|YP_006350681.2| - 5.1 7.6 4.8 1.3 9.4 0.4 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.4 gi|389848443|ref|YP_006350682.1| - 4.2e-48 161.3 0.4 5.1e-48 161.0 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|389848444|ref|YP_006350683.1| - 4.7e-15 55.5 0.0 6.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|389848444|ref|YP_006350683.1| - 2.8e-11 43.2 0.5 3.7e-05 23.2 0.1 2.8 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|389848444|ref|YP_006350683.1| - 3.1e-08 33.0 0.0 8.1e-05 21.9 0.1 2.6 1 1 2 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|389848444|ref|YP_006350683.1| - 1e-05 26.3 0.3 2e-05 25.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|389848444|ref|YP_006350683.1| - 1.2e-05 25.5 0.1 1.7e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|389848444|ref|YP_006350683.1| - 6.5e-05 22.2 1.4 0.0012 18.1 1.0 2.6 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|389848444|ref|YP_006350683.1| - 0.0001 22.7 0.0 0.00036 21.0 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein NB-ARC PF00931.17 gi|389848444|ref|YP_006350683.1| - 0.00011 21.2 0.0 0.00043 19.2 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain Ras PF00071.17 gi|389848444|ref|YP_006350683.1| - 0.00012 21.4 0.1 0.026 13.9 0.0 2.5 2 1 0 2 2 2 1 Ras family SRPRB PF09439.5 gi|389848444|ref|YP_006350683.1| - 0.00017 20.8 0.0 0.071 12.3 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|389848444|ref|YP_006350683.1| - 0.00032 19.8 0.0 0.00053 19.0 0.0 1.5 1 1 1 2 2 2 1 Septin Dynamin_N PF00350.18 gi|389848444|ref|YP_006350683.1| - 0.002 17.9 0.0 0.13 12.0 0.0 2.5 1 1 0 1 1 1 1 Dynamin family AAA_22 PF13401.1 gi|389848444|ref|YP_006350683.1| - 0.0028 17.8 0.1 0.0059 16.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|389848444|ref|YP_006350683.1| - 0.003 17.7 0.0 0.019 15.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|389848444|ref|YP_006350683.1| - 0.0035 17.3 0.1 0.034 14.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|389848444|ref|YP_006350683.1| - 0.004 17.1 0.0 0.0051 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|389848444|ref|YP_006350683.1| - 0.0041 16.8 0.0 0.035 13.8 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|389848444|ref|YP_006350683.1| - 0.007 16.1 0.0 0.05 13.3 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|389848444|ref|YP_006350683.1| - 0.008 16.3 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|389848444|ref|YP_006350683.1| - 0.0089 15.1 0.0 0.036 13.1 0.0 1.8 1 1 0 2 2 2 1 Zeta toxin cobW PF02492.14 gi|389848444|ref|YP_006350683.1| - 0.0093 15.4 0.2 0.73 9.2 0.1 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|389848444|ref|YP_006350683.1| - 0.01 14.6 0.3 0.4 9.4 0.0 2.8 3 1 0 3 3 3 0 ArgK protein ATP-synt_ab PF00006.20 gi|389848444|ref|YP_006350683.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|389848444|ref|YP_006350683.1| - 0.015 15.6 0.0 0.025 14.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|389848444|ref|YP_006350683.1| - 0.021 14.3 0.0 0.89 9.0 0.0 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|389848444|ref|YP_006350683.1| - 0.026 14.4 0.0 0.054 13.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|389848444|ref|YP_006350683.1| - 0.035 13.7 0.0 0.084 12.5 0.0 1.6 2 0 0 2 2 1 0 NACHT domain MMR_HSR1_C PF08438.5 gi|389848444|ref|YP_006350683.1| - 0.056 13.6 0.1 0.14 12.4 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal PduV-EutP PF10662.4 gi|389848444|ref|YP_006350683.1| - 0.069 12.6 0.1 9 5.7 0.0 2.8 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|389848444|ref|YP_006350683.1| - 0.069 12.8 0.0 0.23 11.1 0.0 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|389848444|ref|YP_006350683.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|389848444|ref|YP_006350683.1| - 0.076 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|389848444|ref|YP_006350683.1| - 0.08 12.6 0.2 0.3 10.7 0.0 2.2 2 1 0 2 2 2 0 NTPase Parvo_NS1 PF01057.12 gi|389848444|ref|YP_006350683.1| - 0.14 11.0 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1