#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
RPA_C	PF08784.11	gi|169237161|ref|YP_001690367.1|	-	0.16	12.6	0.0	0.19	12.4	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF3549	PF12069.8	gi|169237161|ref|YP_001690367.1|	-	0.17	10.9	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3549)
DDE_Tnp_1	PF01609.21	gi|169237163|ref|YP_001690369.1|	-	6.9e-05	22.6	0.4	0.00075	19.2	0.4	2.4	1	1	0	1	1	1	1	Transposase	DDE	domain
OFeT_1	PF16955.5	gi|169237165|ref|YP_001690371.1|	-	0.0075	16.0	0.1	0.0088	15.8	0.1	1.2	1	0	0	1	1	1	1	Ferrous	iron	uptake	permease,	iron-lead	transporter
TerC	PF03741.16	gi|169237165|ref|YP_001690371.1|	-	0.0076	15.9	0.0	0.0088	15.7	0.0	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	TerC	family
PqiA	PF04403.13	gi|169237165|ref|YP_001690371.1|	-	0.035	13.9	2.3	0.099	12.5	0.8	1.8	1	1	1	2	2	2	0	Paraquat-inducible	protein	A
Na_Ca_ex	PF01699.24	gi|169237165|ref|YP_001690371.1|	-	0.59	10.1	6.1	0.22	11.5	3.2	1.7	1	1	1	2	2	2	0	Sodium/calcium	exchanger	protein
HTH_3	PF01381.22	gi|169237166|ref|YP_001690372.1|	-	1e-16	60.7	0.0	1.1e-16	60.6	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix
HTH_26	PF13443.6	gi|169237166|ref|YP_001690372.1|	-	8.2e-09	35.8	0.0	9.2e-09	35.6	0.0	1.0	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_31	PF13560.6	gi|169237166|ref|YP_001690372.1|	-	1.1e-08	35.2	0.0	1.2e-08	35.2	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|169237166|ref|YP_001690372.1|	-	1e-07	31.9	0.0	1.2e-07	31.7	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|169237166|ref|YP_001690372.1|	-	0.00017	21.3	0.1	0.00022	21.0	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|169237166|ref|YP_001690372.1|	-	0.00056	19.8	0.0	0.0007	19.5	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|169237166|ref|YP_001690372.1|	-	0.00081	18.9	0.0	0.0011	18.4	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|169237166|ref|YP_001690372.1|	-	0.00089	19.2	0.0	0.0017	18.2	0.0	1.5	2	0	0	2	2	2	1	HTH	domain
HTH_24	PF13412.6	gi|169237166|ref|YP_001690372.1|	-	0.0037	16.8	0.0	0.0047	16.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|169237166|ref|YP_001690372.1|	-	0.022	14.6	0.0	0.033	14.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_7	PF02796.15	gi|169237166|ref|YP_001690372.1|	-	0.036	14.1	1.3	0.11	12.6	0.0	2.1	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	resolvase
YdaS_antitoxin	PF15943.5	gi|169237166|ref|YP_001690372.1|	-	0.057	13.3	0.0	0.071	13.0	0.0	1.2	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
GntR	PF00392.21	gi|169237166|ref|YP_001690372.1|	-	0.087	12.5	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_23	PF13384.6	gi|169237166|ref|YP_001690372.1|	-	0.1	12.4	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|169237166|ref|YP_001690372.1|	-	0.11	12.3	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
TetR_N	PF00440.23	gi|169237166|ref|YP_001690372.1|	-	0.11	12.3	0.0	0.25	11.2	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
HTH_Tnp_1_2	PF13022.6	gi|169237166|ref|YP_001690372.1|	-	0.13	12.5	0.0	0.15	12.2	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
DUF3631	PF12307.8	gi|169237167|ref|YP_001690373.1|	-	0.092	13.0	2.7	1.1	9.4	0.1	4.0	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF3631)
RST	PF12174.8	gi|169237167|ref|YP_001690373.1|	-	0.11	12.5	0.7	62	3.6	0.0	4.2	5	0	0	5	5	5	0	RCD1-SRO-TAF4	(RST)	plant	domain
Caleosin	PF05042.13	gi|169237167|ref|YP_001690373.1|	-	0.13	12.2	0.1	3.1	7.7	0.0	3.1	3	1	0	4	4	4	0	Caleosin	related	protein
Phage_integrase	PF00589.22	gi|169237168|ref|YP_001690374.1|	-	4.8e-05	23.2	0.0	0.0012	18.7	0.0	2.2	2	0	0	2	2	2	1	Phage	integrase	family
I-EGF_1	PF18372.1	gi|169237168|ref|YP_001690374.1|	-	0.00074	19.6	2.7	0.0019	18.2	2.7	1.7	1	0	0	1	1	1	1	Integrin	beta	epidermal	growth	factor	like	domain	1
Cupin_2	PF07883.11	gi|169237168|ref|YP_001690374.1|	-	0.24	11.1	1.2	0.41	10.4	0.2	2.0	2	0	0	2	2	2	0	Cupin	domain
HTH_IclR	PF09339.10	gi|169237169|ref|YP_001690375.1|	-	0.011	15.5	0.0	0.89	9.4	0.0	2.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
GP24_25	PF17388.2	gi|169237169|ref|YP_001690375.1|	-	0.015	15.3	0.1	0.043	13.8	0.1	1.8	1	1	0	1	1	1	0	Tail	assembly	gene	products	24	&	25
Tmemb_cc2	PF10267.9	gi|169237169|ref|YP_001690375.1|	-	0.19	10.8	1.3	0.22	10.7	0.2	1.5	2	0	0	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
DDE_Tnp_1	PF01609.21	gi|169237171|ref|YP_001690377.1|	-	9.9e-31	107.0	0.3	1.3e-30	106.7	0.3	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|169237171|ref|YP_001690377.1|	-	0.00089	19.6	0.1	0.0025	18.1	0.1	1.7	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
DUF4379	PF14311.6	gi|169237172|ref|YP_001690378.1|	-	0.015	15.7	0.2	0.047	14.1	0.1	1.9	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|169237172|ref|YP_001690378.1|	-	0.017	15.9	2.3	0.046	14.6	2.3	1.8	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.8	gi|169237172|ref|YP_001690378.1|	-	0.038	14.3	0.9	0.077	13.3	0.9	1.5	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-C2H2	PF00096.26	gi|169237172|ref|YP_001690378.1|	-	0.094	13.2	3.3	0.18	12.3	3.3	1.5	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.7	gi|169237172|ref|YP_001690378.1|	-	0.12	12.7	1.5	0.13	12.6	0.5	1.5	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
Gas_vesicle	PF00741.18	gi|169237173|ref|YP_001690379.1|	-	4.2e-13	49.2	6.4	4.9e-13	49.0	6.4	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
O_anti_polymase	PF01901.16	gi|169237173|ref|YP_001690379.1|	-	0.084	12.1	0.0	0.096	11.9	0.0	1.0	1	0	0	1	1	1	0	Putative	O-antigen	polymerase
GvpL_GvpF	PF06386.11	gi|169237174|ref|YP_001690380.1|	-	7.3e-78	261.9	1.6	8.4e-78	261.7	1.6	1.0	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
Lipocalin	PF00061.23	gi|169237174|ref|YP_001690380.1|	-	0.066	13.4	0.1	0.15	12.3	0.1	1.5	1	0	0	1	1	1	0	Lipocalin	/	cytosolic	fatty-acid	binding	protein	family
GvpK	PF05121.12	gi|169237175|ref|YP_001690381.1|	-	3.3e-26	91.1	9.9	4.3e-26	90.8	9.9	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	K
Rx_N	PF18052.1	gi|169237175|ref|YP_001690381.1|	-	0.00071	19.8	2.4	0.00094	19.4	2.4	1.2	1	0	0	1	1	1	1	Rx	N-terminal	domain
FlxA	PF14282.6	gi|169237175|ref|YP_001690381.1|	-	0.00098	19.1	1.1	0.0012	18.8	1.1	1.2	1	0	0	1	1	1	1	FlxA-like	protein
Filament	PF00038.21	gi|169237175|ref|YP_001690381.1|	-	0.0061	16.2	3.9	0.0072	15.9	3.9	1.0	1	0	0	1	1	1	1	Intermediate	filament	protein
SpecificRecomb	PF10136.9	gi|169237175|ref|YP_001690381.1|	-	0.0069	14.8	0.2	0.0082	14.5	0.2	1.0	1	0	0	1	1	1	1	Site-specific	recombinase
End3	PF12761.7	gi|169237175|ref|YP_001690381.1|	-	0.0078	16.4	2.1	0.0096	16.1	2.1	1.2	1	0	0	1	1	1	1	Actin	cytoskeleton-regulatory	complex	protein	END3
Selenoprotein_S	PF06936.11	gi|169237175|ref|YP_001690381.1|	-	0.015	15.2	0.4	0.017	15.0	0.4	1.1	1	0	0	1	1	1	0	Selenoprotein	S	(SelS)
bZIP_Maf	PF03131.17	gi|169237175|ref|YP_001690381.1|	-	0.022	15.3	4.6	1.3	9.6	1.7	2.2	1	1	1	2	2	2	0	bZIP	Maf	transcription	factor
DUF2730	PF10805.8	gi|169237175|ref|YP_001690381.1|	-	0.024	14.7	0.4	0.031	14.4	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Csm1_N	PF18504.1	gi|169237175|ref|YP_001690381.1|	-	0.027	14.8	5.2	0.036	14.4	4.6	1.5	1	1	0	1	1	1	0	Csm1	N-terminal	domain
LTV	PF04180.14	gi|169237175|ref|YP_001690381.1|	-	0.029	14.1	1.6	0.033	13.9	1.6	1.1	1	0	0	1	1	1	0	Low	temperature	viability	protein
OmpH	PF03938.14	gi|169237175|ref|YP_001690381.1|	-	0.036	14.4	1.4	0.046	14.0	1.4	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Laminin_II	PF06009.12	gi|169237175|ref|YP_001690381.1|	-	0.059	13.4	1.1	0.079	13.0	1.1	1.3	1	0	0	1	1	1	0	Laminin	Domain	II
HSP70	PF00012.20	gi|169237175|ref|YP_001690381.1|	-	0.062	11.5	0.7	0.07	11.3	0.7	1.0	1	0	0	1	1	1	0	Hsp70	protein
Spc24	PF08286.11	gi|169237175|ref|YP_001690381.1|	-	0.094	13.0	2.4	0.14	12.4	2.4	1.4	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF4140	PF13600.6	gi|169237175|ref|YP_001690381.1|	-	0.11	12.9	2.8	0.12	12.8	2.1	1.5	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
EMP24_GP25L	PF01105.24	gi|169237175|ref|YP_001690381.1|	-	0.16	11.9	0.6	0.19	11.7	0.6	1.2	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Herpes_UL25	PF01499.16	gi|169237175|ref|YP_001690381.1|	-	0.19	10.2	1.2	0.23	9.9	1.2	1.0	1	0	0	1	1	1	0	Herpesvirus	UL25	family
Hpt	PF01627.23	gi|169237175|ref|YP_001690381.1|	-	0.24	11.7	6.5	0.12	12.6	3.0	1.9	1	1	1	2	2	2	0	Hpt	domain
Rsa3	PF14615.6	gi|169237175|ref|YP_001690381.1|	-	0.25	10.9	6.3	3.1	7.4	0.3	3.3	2	1	1	3	3	3	0	Ribosome-assembly	protein	3
TetR_C_24	PF17932.1	gi|169237175|ref|YP_001690381.1|	-	0.41	10.9	4.0	3.4	7.9	0.9	2.1	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
NUDE_C	PF04880.13	gi|169237175|ref|YP_001690381.1|	-	0.47	10.9	6.6	0.59	10.6	6.6	1.2	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
SlyX	PF04102.12	gi|169237175|ref|YP_001690381.1|	-	0.75	10.5	7.2	6.1	7.5	7.2	2.5	1	1	0	1	1	1	0	SlyX
Glu-tRNAGln	PF02686.15	gi|169237175|ref|YP_001690381.1|	-	1.3	9.4	5.6	3	8.2	5.6	1.8	1	1	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
cwf21	PF08312.12	gi|169237175|ref|YP_001690381.1|	-	5.1	7.3	13.5	4	7.7	4.3	2.6	1	1	1	2	2	2	0	cwf21	domain
DUF5595	PF18077.1	gi|169237175|ref|YP_001690381.1|	-	7	6.8	7.6	10	6.3	1.4	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5595)
Gas_vesicle	PF00741.18	gi|169237176|ref|YP_001690382.1|	-	4.4e-15	55.6	3.4	5.4e-15	55.3	3.4	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
Mitofilin	PF09731.9	gi|169237177|ref|YP_001690383.1|	-	0.066	12.0	8.8	0.075	11.9	8.8	1.0	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Vfa1	PF08432.10	gi|169237177|ref|YP_001690383.1|	-	3.3	8.0	11.8	4.1	7.7	11.8	1.2	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
GvpH	PF05455.11	gi|169237178|ref|YP_001690384.1|	-	1.7e-99	331.1	19.6	1.9e-99	330.9	19.6	1.0	1	0	0	1	1	1	1	GvpH
ArsA_HSP20	PF17886.1	gi|169237178|ref|YP_001690384.1|	-	0.00024	20.6	1.6	0.0015	18.0	1.6	2.1	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
THOC7	PF05615.13	gi|169237179|ref|YP_001690385.1|	-	0.023	15.0	5.9	0.025	14.8	5.9	1.1	1	0	0	1	1	1	0	Tho	complex	subunit	7
GvpG	PF05120.12	gi|169237179|ref|YP_001690385.1|	-	0.038	14.0	3.1	0.044	13.8	3.1	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
SHOCT	PF09851.9	gi|169237179|ref|YP_001690385.1|	-	0.081	12.7	2.3	0.12	12.2	0.6	2.2	2	0	0	2	2	2	0	Short	C-terminal	domain
GvpL_GvpF	PF06386.11	gi|169237180|ref|YP_001690386.1|	-	8.2e-43	147.1	1.2	2.1e-23	83.5	0.3	2.0	1	1	1	2	2	2	2	Gas	vesicle	synthesis	protein	GvpL/GvpF
PadR	PF03551.14	gi|169237181|ref|YP_001690387.1|	-	2.5e-07	30.5	0.0	4.5e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|169237181|ref|YP_001690387.1|	-	0.14	12.3	0.0	0.21	11.7	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
TrmB	PF01978.19	gi|169237181|ref|YP_001690387.1|	-	0.17	11.8	0.0	0.28	11.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GvpD	PF07088.11	gi|169237182|ref|YP_001690388.1|	-	7.3e-271	898.8	0.3	8.3e-271	898.6	0.3	1.0	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
ATPase	PF06745.13	gi|169237182|ref|YP_001690388.1|	-	1.6e-14	53.9	0.0	1.2e-10	41.2	0.0	2.4	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|169237182|ref|YP_001690388.1|	-	0.025	14.2	0.1	0.098	12.2	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
PAXNEB	PF05625.11	gi|169237182|ref|YP_001690388.1|	-	0.082	12.0	0.1	0.15	11.2	0.1	1.3	1	0	0	1	1	1	0	PAXNEB	protein
zf-C2H2_8	PF15909.5	gi|169237183|ref|YP_001690389.1|	-	0.075	13.3	0.0	0.19	12.0	0.0	1.7	2	0	0	2	2	2	0	C2H2-type	zinc	ribbon
Gas_vesicle	PF00741.18	gi|169237184|ref|YP_001690390.1|	-	6.6e-14	51.8	6.4	8.7e-14	51.4	6.4	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
Halo_GVPC	PF05465.13	gi|169237185|ref|YP_001690391.1|	-	2.4e-74	244.8	102.0	7.3e-13	48.5	7.3	8.0	8	0	0	8	8	7	7	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
HsbA	PF12296.8	gi|169237185|ref|YP_001690391.1|	-	6.6e-07	29.8	4.0	0.023	15.1	1.1	2.7	1	1	1	2	2	2	2	Hydrophobic	surface	binding	protein	A
ROS_MUCR	PF05443.11	gi|169237185|ref|YP_001690391.1|	-	2.2e-06	27.7	1.4	7.6e-06	26.0	1.4	2.1	1	1	0	1	1	1	1	ROS/MUCR	transcriptional	regulator	protein
Bacillus_HBL	PF05791.11	gi|169237185|ref|YP_001690391.1|	-	0.00013	21.9	7.7	0.0085	15.9	0.6	3.6	2	1	2	4	4	4	2	Bacillus	haemolytic	enterotoxin	(HBL)
SHE3	PF17078.5	gi|169237185|ref|YP_001690391.1|	-	0.00023	21.0	1.6	0.31	10.7	0.0	3.1	1	1	2	3	3	3	2	SWI5-dependent	HO	expression	protein	3
DUF1664	PF07889.12	gi|169237185|ref|YP_001690391.1|	-	0.00029	20.9	0.8	0.12	12.4	0.1	3.2	1	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1664)
FAM184	PF15665.5	gi|169237185|ref|YP_001690391.1|	-	0.00044	20.1	4.0	0.00044	20.1	4.0	2.8	1	1	2	3	3	3	1	Family	with	sequence	similarity	184,	A	and	B
AAA_13	PF13166.6	gi|169237185|ref|YP_001690391.1|	-	0.0012	17.6	1.2	0.0012	17.6	1.2	2.1	1	1	1	2	2	2	2	AAA	domain
Baculo_PEP_C	PF04513.12	gi|169237185|ref|YP_001690391.1|	-	0.0021	18.1	0.3	1.2	9.2	0.1	2.9	1	1	2	3	3	3	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF713	PF05218.14	gi|169237185|ref|YP_001690391.1|	-	0.0037	17.0	0.6	0.92	9.2	0.1	2.9	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF713)
OmpH	PF03938.14	gi|169237185|ref|YP_001690391.1|	-	0.004	17.5	13.5	0.14	12.5	1.7	3.9	1	1	2	3	3	3	2	Outer	membrane	protein	(OmpH-like)
Lectin_N	PF03954.14	gi|169237185|ref|YP_001690391.1|	-	0.0057	16.4	0.0	0.8	9.4	0.0	3.0	1	1	2	3	3	3	1	Hepatic	lectin,	N-terminal	domain
HAP1_N	PF04849.13	gi|169237185|ref|YP_001690391.1|	-	0.0057	15.9	2.5	0.01	15.0	0.0	2.5	2	1	0	3	3	3	1	HAP1	N-terminal	conserved	region
Fib_alpha	PF08702.10	gi|169237185|ref|YP_001690391.1|	-	0.012	15.8	0.1	1.5	9.0	0.1	2.7	2	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
LOH1CR12	PF10158.9	gi|169237185|ref|YP_001690391.1|	-	0.019	15.0	2.0	1.9	8.5	0.1	3.1	1	1	3	4	4	4	0	Tumour	suppressor	protein
DUF2508	PF10704.9	gi|169237185|ref|YP_001690391.1|	-	0.019	15.1	10.2	2.3	8.5	0.0	5.6	1	1	6	7	7	7	0	Protein	of	unknown	function	(DUF2508)
TMPIT	PF07851.13	gi|169237185|ref|YP_001690391.1|	-	0.025	13.8	0.0	0.14	11.4	0.1	1.9	2	0	0	2	2	2	0	TMPIT-like	protein
AIP3	PF03915.13	gi|169237185|ref|YP_001690391.1|	-	0.049	12.7	0.8	0.48	9.5	0.6	2.3	1	1	1	2	2	2	0	Actin	interacting	protein	3
CENP-H	PF05837.12	gi|169237185|ref|YP_001690391.1|	-	0.089	13.2	0.9	0.53	10.7	0.0	2.6	3	0	0	3	3	2	0	Centromere	protein	H	(CENP-H)
Prefoldin_3	PF13758.6	gi|169237185|ref|YP_001690391.1|	-	0.17	12.0	5.7	47	4.1	0.0	4.7	1	1	3	5	5	5	0	Prefoldin	subunit
Golgin_A5	PF09787.9	gi|169237185|ref|YP_001690391.1|	-	0.18	11.2	3.6	5.2	6.5	0.0	3.2	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
Med21	PF11221.8	gi|169237185|ref|YP_001690391.1|	-	0.19	12.0	0.2	0.19	12.0	0.2	3.0	2	1	1	3	3	3	0	Subunit	21	of	Mediator	complex
AATF-Che1	PF13339.6	gi|169237185|ref|YP_001690391.1|	-	0.23	12.2	4.1	35	5.0	4.1	3.2	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
BAR	PF03114.18	gi|169237185|ref|YP_001690391.1|	-	0.24	11.0	13.3	0.48	10.0	0.7	3.4	1	1	2	3	3	3	0	BAR	domain
HMMR_C	PF15908.5	gi|169237185|ref|YP_001690391.1|	-	0.33	11.2	1.2	8.4	6.6	0.0	3.2	1	1	1	3	3	3	0	Hyaluronan	mediated	motility	receptor	C-terminal
NPV_P10	PF05531.12	gi|169237185|ref|YP_001690391.1|	-	0.54	10.8	5.6	16	6.0	1.5	3.9	1	1	3	4	4	4	0	Nucleopolyhedrovirus	P10	protein
Peptidase_M48	PF01435.18	gi|169237185|ref|YP_001690391.1|	-	0.79	9.5	7.1	0.87	9.3	2.4	2.7	1	1	1	2	2	2	0	Peptidase	family	M48
DUF1515	PF07439.11	gi|169237185|ref|YP_001690391.1|	-	0.92	9.6	3.0	90	3.2	0.2	3.7	1	1	4	5	5	5	0	Protein	of	unknown	function	(DUF1515)
PHA_synth_III_E	PF09712.10	gi|169237185|ref|YP_001690391.1|	-	1	8.3	6.6	3.2	6.8	4.0	2.8	1	1	2	3	3	3	0	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
CCP_MauG	PF03150.14	gi|169237185|ref|YP_001690391.1|	-	1.1	9.9	13.9	6.1	7.5	1.4	3.9	1	1	2	3	3	3	0	Di-haem	cytochrome	c	peroxidase
CorA	PF01544.18	gi|169237185|ref|YP_001690391.1|	-	1.3	8.3	8.0	2.6	7.3	1.3	2.9	1	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Seryl_tRNA_N	PF02403.22	gi|169237185|ref|YP_001690391.1|	-	2	8.7	5.3	27	5.0	0.0	4.0	2	1	1	4	4	3	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF848	PF05852.11	gi|169237185|ref|YP_001690391.1|	-	2.9	8.0	17.1	0.3	11.2	1.2	4.3	2	1	4	6	6	4	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
FUSC	PF04632.12	gi|169237185|ref|YP_001690391.1|	-	4.4	5.7	8.2	2.7	6.4	5.3	1.9	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
LprI	PF07007.12	gi|169237185|ref|YP_001690391.1|	-	5.1	7.8	9.4	11	6.8	0.7	3.8	1	1	1	2	2	2	0	Lysozyme	inhibitor	LprI
TBCC_N	PF16752.5	gi|169237185|ref|YP_001690391.1|	-	6.7	7.2	12.2	2.1e+03	-0.9	12.0	3.8	1	1	0	1	1	1	0	Tubulin-specific	chaperone	C	N-terminal	domain
Rotamase	PF00639.21	gi|169237185|ref|YP_001690391.1|	-	8.7	7.4	20.7	13	6.8	0.2	5.4	1	1	4	5	5	5	0	PPIC-type	PPIASE	domain
AAA_5	PF07728.14	gi|169237186|ref|YP_001690392.1|	-	5.5e-18	65.3	0.0	2.4e-16	60.0	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|169237186|ref|YP_001690392.1|	-	1.3e-05	25.7	0.1	4.3e-05	24.0	0.0	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|169237186|ref|YP_001690392.1|	-	6e-05	22.6	0.0	0.00018	21.1	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|169237186|ref|YP_001690392.1|	-	7.4e-05	23.2	0.0	0.00026	21.4	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|169237186|ref|YP_001690392.1|	-	0.00014	21.5	0.0	0.0027	17.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.11	gi|169237186|ref|YP_001690392.1|	-	0.00021	21.1	0.0	0.022	14.6	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|169237186|ref|YP_001690392.1|	-	0.00083	19.1	0.0	0.0019	17.9	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|169237186|ref|YP_001690392.1|	-	0.0011	19.1	1.4	0.0057	16.8	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
ABC_tran	PF00005.27	gi|169237186|ref|YP_001690392.1|	-	0.0019	18.7	0.0	0.0034	17.9	0.0	1.7	1	1	0	1	1	1	1	ABC	transporter
ATPase_2	PF01637.18	gi|169237186|ref|YP_001690392.1|	-	0.0041	17.1	0.0	0.012	15.5	0.0	1.7	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|169237186|ref|YP_001690392.1|	-	0.0076	16.0	0.0	0.13	12.0	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
IPT	PF01745.16	gi|169237186|ref|YP_001690392.1|	-	0.015	14.7	0.0	0.029	13.8	0.0	1.4	1	0	0	1	1	1	0	Isopentenyl	transferase
Sigma54_activ_2	PF14532.6	gi|169237186|ref|YP_001690392.1|	-	0.017	15.2	0.0	0.029	14.5	0.0	1.6	1	1	0	1	1	1	0	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|169237186|ref|YP_001690392.1|	-	0.017	14.9	0.0	0.14	11.9	0.0	2.2	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NB-ARC	PF00931.22	gi|169237186|ref|YP_001690392.1|	-	0.02	14.1	0.1	0.28	10.4	0.0	2.1	2	0	0	2	2	2	0	NB-ARC	domain
AAA_18	PF13238.6	gi|169237186|ref|YP_001690392.1|	-	0.026	15.1	0.1	0.08	13.5	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|169237186|ref|YP_001690392.1|	-	0.032	14.0	0.3	0.15	11.8	0.0	2.2	3	0	0	3	3	3	0	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.6	gi|169237186|ref|YP_001690392.1|	-	0.033	14.4	0.0	0.15	12.4	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|169237186|ref|YP_001690392.1|	-	0.036	14.3	0.0	0.099	12.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|169237186|ref|YP_001690392.1|	-	0.043	13.7	0.0	0.093	12.6	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_14	PF13173.6	gi|169237186|ref|YP_001690392.1|	-	0.072	13.1	0.0	0.17	11.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|169237186|ref|YP_001690392.1|	-	0.15	12.0	0.0	0.66	10.0	0.0	1.9	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
GvpO	PF05800.11	gi|169237187|ref|YP_001690393.1|	-	1.9e-34	117.5	0.1	2.3e-34	117.2	0.1	1.1	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpO
AAA_31	PF13614.6	gi|169237188|ref|YP_001690394.1|	-	2.8e-43	147.9	0.0	3.5e-43	147.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|169237188|ref|YP_001690394.1|	-	8.5e-17	61.4	0.0	1.9e-16	60.2	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|169237188|ref|YP_001690394.1|	-	4.3e-11	42.6	1.7	2.1e-08	33.8	0.6	2.4	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|169237188|ref|YP_001690394.1|	-	4.2e-10	39.5	0.0	6.8e-10	38.8	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|169237188|ref|YP_001690394.1|	-	8.6e-10	38.5	1.3	1.1e-08	34.8	1.7	2.2	2	1	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|169237188|ref|YP_001690394.1|	-	1.5e-05	24.3	1.2	0.00013	21.3	1.2	2.2	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|169237188|ref|YP_001690394.1|	-	0.00016	21.2	0.0	0.014	14.9	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|169237188|ref|YP_001690394.1|	-	0.016	14.5	0.2	0.045	13.1	0.0	1.8	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|169237188|ref|YP_001690394.1|	-	0.028	14.0	1.2	0.062	12.9	0.4	2.0	2	1	0	2	2	2	0	AAA	domain
CLP1_P	PF16575.5	gi|169237188|ref|YP_001690394.1|	-	0.036	13.9	0.0	0.059	13.2	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DnaB_C	PF03796.15	gi|169237188|ref|YP_001690394.1|	-	0.1	11.9	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
PAS_9	PF13426.7	gi|169237189|ref|YP_001690395.1|	-	1.3e-42	144.3	0.4	3e-09	37.1	0.0	5.0	5	0	0	5	5	5	4	PAS	domain
PAS	PF00989.25	gi|169237189|ref|YP_001690395.1|	-	3.5e-42	143.0	4.2	6.9e-17	61.5	0.1	4.9	5	0	0	5	5	5	4	PAS	fold
PAS_4	PF08448.10	gi|169237189|ref|YP_001690395.1|	-	6.6e-42	142.2	10.9	4.6e-11	42.9	0.1	4.6	4	0	0	4	4	4	4	PAS	fold
PAS_8	PF13188.7	gi|169237189|ref|YP_001690395.1|	-	1.1e-34	117.8	0.6	1.5e-07	31.3	0.0	5.1	5	0	0	5	5	5	4	PAS	domain
Response_reg	PF00072.24	gi|169237189|ref|YP_001690395.1|	-	3.8e-24	85.0	0.0	1.2e-23	83.4	0.0	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|169237189|ref|YP_001690395.1|	-	4.4e-17	62.6	0.0	1.2e-16	61.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|169237189|ref|YP_001690395.1|	-	8.3e-17	61.3	0.3	8.2e-05	22.8	0.0	4.7	4	0	0	4	4	4	3	PAS	fold
PAS_7	PF12860.7	gi|169237189|ref|YP_001690395.1|	-	2.1e-11	44.0	4.0	1.6e-05	25.1	0.1	5.0	4	2	0	4	4	4	2	PAS	fold
HisKA	PF00512.25	gi|169237189|ref|YP_001690395.1|	-	4.5e-10	39.4	0.6	4.5e-10	39.4	0.6	4.0	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|169237189|ref|YP_001690395.1|	-	5.2e-07	30.2	0.2	0.017	15.7	0.0	4.2	4	1	1	5	5	5	1	PAS	domain
HATPase_c_3	PF13589.6	gi|169237189|ref|YP_001690395.1|	-	0.012	15.4	0.0	0.035	13.9	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
mCpol	PF18182.1	gi|169237189|ref|YP_001690395.1|	-	0.029	14.7	0.3	0.24	11.7	0.1	2.4	2	0	0	2	2	2	0	minimal	CRISPR	polymerase	domain
GRDB	PF07355.12	gi|169237189|ref|YP_001690395.1|	-	0.081	12.2	0.2	0.25	10.6	0.0	1.8	2	0	0	2	2	2	0	Glycine/sarcosine/betaine	reductase	selenoprotein	B	(GRDB)
zf-dskA_traR	PF01258.17	gi|169237190|ref|YP_001690396.1|	-	0.0019	18.1	1.6	0.009	15.9	0.0	2.0	2	0	0	2	2	2	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
Terminase_GpA	PF05876.12	gi|169237190|ref|YP_001690396.1|	-	0.0044	15.6	0.2	0.0045	15.6	0.2	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
Rubredoxin_2	PF18073.1	gi|169237190|ref|YP_001690396.1|	-	0.012	15.3	1.3	0.039	13.7	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|169237190|ref|YP_001690396.1|	-	0.062	12.9	0.9	0.21	11.2	0.1	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DiS_P_DiS	PF06750.13	gi|169237190|ref|YP_001690396.1|	-	0.064	13.4	0.3	0.24	11.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
RNA_POL_M_15KD	PF02150.16	gi|169237190|ref|YP_001690396.1|	-	0.14	12.0	1.3	3.9	7.4	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
TBP	PF00352.21	gi|169237191|ref|YP_001690397.1|	-	6.7e-25	86.9	0.0	7.3e-25	86.7	0.0	1.0	1	0	0	1	1	1	1	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DDE_Tnp_1	PF01609.21	gi|169237192|ref|YP_001690398.1|	-	1.5e-29	103.2	0.1	2e-29	102.8	0.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|169237192|ref|YP_001690398.1|	-	0.00079	19.7	0.1	0.0025	18.1	0.1	1.8	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
zf-C2H2_8	PF15909.5	gi|169237193|ref|YP_001690399.1|	-	0.075	13.3	0.0	0.19	12.0	0.0	1.7	2	0	0	2	2	2	0	C2H2-type	zinc	ribbon
DDE_Tnp_1	PF01609.21	gi|169237194|ref|YP_001690400.1|	-	1.2e-21	77.3	1.2	1.9e-21	76.7	1.2	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|169237194|ref|YP_001690400.1|	-	0.00093	19.2	0.1	0.0027	17.7	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_3	PF13612.6	gi|169237194|ref|YP_001690400.1|	-	0.0033	17.4	0.0	0.0055	16.7	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1989	PF09347.10	gi|169237194|ref|YP_001690400.1|	-	0.012	15.3	0.2	0.022	14.4	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1989)
DDE_Tnp_1_6	PF13751.6	gi|169237194|ref|YP_001690400.1|	-	0.018	15.3	0.6	0.032	14.4	0.1	1.7	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|169237195|ref|YP_001690401.1|	-	5.7e-26	91.5	0.0	7.9e-26	91.0	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|169237195|ref|YP_001690401.1|	-	0.0047	16.2	0.1	0.009	15.3	0.1	1.4	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|169237195|ref|YP_001690401.1|	-	0.1	10.8	0.0	0.15	10.3	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
DDE_Tnp_1_2	PF13586.6	gi|169237195|ref|YP_001690401.1|	-	0.21	12.0	0.7	0.56	10.6	0.0	2.0	2	0	0	2	2	2	0	Transposase	DDE	domain
CsgG	PF03783.14	gi|169237196|ref|YP_001690402.1|	-	0.085	12.1	0.4	0.095	12.0	0.4	1.0	1	0	0	1	1	1	0	Curli	production	assembly/transport	component	CsgG
RXLR_WY	PF18634.1	gi|169237196|ref|YP_001690402.1|	-	0.45	10.5	2.8	0.44	10.5	1.7	1.6	1	1	1	2	2	2	0	RXLR	phytopathogen	effector	protein	WY-domain
Anoctamin	PF04547.12	gi|169237197|ref|YP_001690403.1|	-	0.11	11.3	2.4	0.13	11.1	2.4	1.0	1	0	0	1	1	1	0	Calcium-activated	chloride	channel
DUF2721	PF11026.8	gi|169237197|ref|YP_001690403.1|	-	0.11	12.3	5.4	0.13	12.1	5.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
SHR3_chaperone	PF08229.11	gi|169237197|ref|YP_001690403.1|	-	0.29	10.1	1.9	0.33	9.9	1.9	1.1	1	0	0	1	1	1	0	ER	membrane	protein	SH3
DUF2244	PF10003.9	gi|169237197|ref|YP_001690403.1|	-	0.73	9.5	4.7	1	9.0	4.7	1.2	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
EVI2A	PF05399.11	gi|169237197|ref|YP_001690403.1|	-	1.4	8.5	2.2	0.89	9.1	0.1	1.6	1	1	1	2	2	2	0	Ectropic	viral	integration	site	2A	protein	(EVI2A)
RhodobacterPufX	PF11511.8	gi|169237197|ref|YP_001690403.1|	-	1.9	8.1	7.9	5.2	6.7	1.7	2.0	2	0	0	2	2	2	0	Intrinsic	membrane	protein	PufX
DUF2207	PF09972.9	gi|169237197|ref|YP_001690403.1|	-	2.9	6.6	4.1	3	6.5	4.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF1931	PF09123.11	gi|169237198|ref|YP_001690404.1|	-	0.0026	17.9	0.4	0.0027	17.8	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|169237198|ref|YP_001690404.1|	-	0.003	17.8	0.0	0.0034	17.6	0.0	1.3	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
DctP	PF03480.13	gi|169237198|ref|YP_001690404.1|	-	0.063	12.6	0.1	0.073	12.4	0.1	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
PadR	PF03551.14	gi|169237199|ref|YP_001690405.1|	-	1.5e-17	63.3	0.4	1.8e-17	63.1	0.4	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|169237199|ref|YP_001690405.1|	-	0.00035	20.5	0.0	0.00041	20.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|169237199|ref|YP_001690405.1|	-	0.038	13.8	0.0	0.056	13.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR_2	PF12802.7	gi|169237199|ref|YP_001690405.1|	-	0.075	12.9	0.2	2.4	8.1	0.1	2.5	2	1	0	2	2	2	0	MarR	family
RHH_1	PF01402.21	gi|169237200|ref|YP_001690406.1|	-	0.011	15.6	4.4	0.021	14.7	1.1	2.6	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|169237200|ref|YP_001690406.1|	-	0.059	13.3	0.0	0.15	12.0	0.0	1.7	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
DUF4250	PF14056.6	gi|169237200|ref|YP_001690406.1|	-	0.076	13.0	0.1	0.1	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
FYVE	PF01363.21	gi|169237201|ref|YP_001690407.1|	-	0.028	14.5	0.4	0.069	13.3	0.4	1.6	1	1	0	1	1	1	0	FYVE	zinc	finger
DUF4428	PF14471.6	gi|169237201|ref|YP_001690407.1|	-	0.031	14.2	0.3	0.36	10.8	0.3	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
zf-AD	PF07776.15	gi|169237201|ref|YP_001690407.1|	-	0.053	13.8	0.3	0.12	12.7	0.3	1.6	1	1	0	1	1	1	0	Zinc-finger	associated	domain	(zf-AD)
Cyt_bd_oxida_I	PF01654.17	gi|169237204|ref|YP_001690410.1|	-	6.3e-139	463.2	20.9	7.2e-139	463.0	20.9	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
DUF2627	PF11118.8	gi|169237204|ref|YP_001690410.1|	-	0.38	11.4	0.1	0.38	11.4	0.1	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2627)
Cyt_bd_oxida_II	PF02322.15	gi|169237205|ref|YP_001690411.1|	-	1.4e-58	198.6	32.2	1.8e-58	198.3	32.2	1.1	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
DrsE_2	PF13686.6	gi|169237206|ref|YP_001690412.1|	-	1.1e-54	184.5	0.4	1.4e-54	184.2	0.4	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|169237206|ref|YP_001690412.1|	-	1.8e-07	31.5	0.0	6.8e-07	29.7	0.0	1.8	1	1	0	1	1	1	1	DsrE/DsrF-like	family
Prenyltrans	PF00432.21	gi|169237206|ref|YP_001690412.1|	-	0.051	13.3	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	Prenyltransferase	and	squalene	oxidase	repeat
TusA	PF01206.17	gi|169237207|ref|YP_001690413.1|	-	3.8e-21	74.7	0.0	4.3e-21	74.5	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|169237207|ref|YP_001690413.1|	-	0.012	15.5	0.0	0.024	14.5	0.0	1.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
Lactamase_B	PF00753.27	gi|169237208|ref|YP_001690414.1|	-	4.3e-11	43.2	7.4	9.1e-11	42.1	7.4	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|169237208|ref|YP_001690414.1|	-	2.6e-10	40.8	0.1	6.4e-10	39.5	0.0	1.7	2	0	0	2	2	2	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|169237208|ref|YP_001690414.1|	-	0.09	12.3	2.1	0.12	11.8	0.3	2.1	2	0	0	2	2	2	0	Beta-lactamase	superfamily	domain
Sulf_transp	PF04143.14	gi|169237209|ref|YP_001690415.1|	-	1.4e-13	51.1	12.6	2.2e-13	50.5	12.6	1.3	1	0	0	1	1	1	1	Sulphur	transport
Trp_oprn_chp	PF09534.10	gi|169237209|ref|YP_001690415.1|	-	2	8.2	10.6	0.028	14.2	1.7	2.1	1	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4282	PF14110.6	gi|169237209|ref|YP_001690415.1|	-	5.8	7.7	8.6	1.6	9.5	3.8	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
Sulf_transp	PF04143.14	gi|169237210|ref|YP_001690416.1|	-	4.7e-08	33.0	8.9	4.7e-08	33.0	8.9	2.0	1	1	1	2	2	2	2	Sulphur	transport
B12D	PF06522.11	gi|169237210|ref|YP_001690416.1|	-	1.9	8.3	2.9	11	5.9	0.1	2.5	2	0	0	2	2	2	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
PHO4	PF01384.20	gi|169237211|ref|YP_001690417.1|	-	5.4e-46	157.2	33.1	5.4e-46	157.2	33.1	1.4	1	1	0	1	1	1	1	Phosphate	transporter	family
HTH_10	PF04967.12	gi|169237212|ref|YP_001690418.1|	-	4.3e-21	74.4	0.8	9.7e-21	73.3	0.8	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|169237212|ref|YP_001690418.1|	-	0.012	15.1	0.0	0.032	13.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_1_2	PF13022.6	gi|169237212|ref|YP_001690418.1|	-	0.13	12.4	0.1	0.24	11.6	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
Rhodanese	PF00581.20	gi|169237213|ref|YP_001690419.1|	-	8.4e-14	52.0	0.0	2.3e-13	50.6	0.0	1.8	2	0	0	2	2	2	1	Rhodanese-like	domain
Lactamase_B	PF00753.27	gi|169237213|ref|YP_001690419.1|	-	4.6e-13	49.6	12.3	3e-12	46.9	12.3	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|169237213|ref|YP_001690419.1|	-	0.0008	19.0	3.8	0.0034	16.9	3.8	1.9	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
MFS_1	PF07690.16	gi|169237214|ref|YP_001690420.1|	-	2.3e-36	125.5	43.1	3.1e-19	69.1	20.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|169237214|ref|YP_001690420.1|	-	2.8e-09	36.4	21.7	1.2e-06	27.7	6.8	2.1	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|169237214|ref|YP_001690420.1|	-	1.4e-07	30.7	18.4	0.0024	16.8	5.5	3.4	3	1	0	3	3	3	3	MFS_1	like	family
TauE	PF01925.19	gi|169237216|ref|YP_001690422.1|	-	7.2e-43	146.9	35.8	7.2e-43	146.9	35.8	1.8	1	1	1	2	2	2	1	Sulfite	exporter	TauE/SafE
TrmB	PF01978.19	gi|169237217|ref|YP_001690423.1|	-	4.5e-19	68.1	0.0	5.9e-19	67.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|169237217|ref|YP_001690423.1|	-	2.7e-07	30.3	0.0	4.8e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|169237217|ref|YP_001690423.1|	-	8.7e-07	28.8	0.1	2e-06	27.6	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|169237217|ref|YP_001690423.1|	-	9.5e-06	25.5	0.0	1.4e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.16	gi|169237217|ref|YP_001690423.1|	-	9.1e-05	22.8	0.0	0.00011	22.5	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|169237217|ref|YP_001690423.1|	-	0.00012	21.8	0.1	0.00022	21.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|169237217|ref|YP_001690423.1|	-	0.00013	22.0	0.1	0.00022	21.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|169237217|ref|YP_001690423.1|	-	0.001	18.6	0.0	0.0016	18.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RuvB_C	PF05491.13	gi|169237217|ref|YP_001690423.1|	-	0.0012	18.6	0.0	0.0021	17.9	0.0	1.3	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
UMPH-1	PF05822.12	gi|169237217|ref|YP_001690423.1|	-	0.0017	17.9	0.1	0.0025	17.4	0.1	1.4	1	1	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_29	PF13551.6	gi|169237217|ref|YP_001690423.1|	-	0.0033	17.4	0.0	0.0046	17.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|169237217|ref|YP_001690423.1|	-	0.009	16.1	0.0	0.018	15.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|169237217|ref|YP_001690423.1|	-	0.027	14.1	0.1	0.052	13.2	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|169237217|ref|YP_001690423.1|	-	0.033	14.2	0.0	0.053	13.5	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|169237217|ref|YP_001690423.1|	-	0.034	14.5	0.0	0.075	13.4	0.0	1.5	2	0	0	2	2	1	0	Transcriptional	regulator
Cupin_4	PF08007.12	gi|169237217|ref|YP_001690423.1|	-	0.034	13.6	0.1	0.042	13.3	0.1	1.1	1	0	0	1	1	1	0	Cupin	superfamily	protein
Dimerisation	PF08100.11	gi|169237217|ref|YP_001690423.1|	-	0.042	13.9	0.0	0.084	12.9	0.0	1.5	1	0	0	1	1	1	0	Dimerisation	domain
HTH_38	PF13936.6	gi|169237217|ref|YP_001690423.1|	-	0.046	13.5	0.0	0.078	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|169237217|ref|YP_001690423.1|	-	0.055	13.3	0.0	0.093	12.6	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF4423	PF14394.6	gi|169237217|ref|YP_001690423.1|	-	0.058	13.1	0.0	0.089	12.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
SMC_ScpB	PF04079.16	gi|169237217|ref|YP_001690423.1|	-	0.075	12.6	0.3	0.78	9.3	0.1	2.3	1	1	1	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
PadR	PF03551.14	gi|169237217|ref|YP_001690423.1|	-	0.078	13.0	0.3	0.17	11.9	0.3	1.8	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Tfb2	PF03849.14	gi|169237217|ref|YP_001690423.1|	-	0.11	11.4	0.0	0.11	11.4	0.0	1.1	1	0	0	1	1	1	0	Transcription	factor	Tfb2
HTH_27	PF13463.6	gi|169237217|ref|YP_001690423.1|	-	0.15	12.6	0.0	0.24	11.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Thioredoxin	PF00085.20	gi|169237218|ref|YP_001690424.1|	-	2.2e-27	95.1	0.0	2.5e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|169237218|ref|YP_001690424.1|	-	2.9e-11	43.8	0.1	8e-10	39.1	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|169237218|ref|YP_001690424.1|	-	3e-07	30.4	0.4	5.5e-07	29.6	0.1	1.5	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
TraF	PF13728.6	gi|169237218|ref|YP_001690424.1|	-	1.7e-06	28.0	0.0	2.1e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
HyaE	PF07449.11	gi|169237218|ref|YP_001690424.1|	-	1.1e-05	25.3	0.1	5.9e-05	23.0	0.1	1.9	1	1	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_3	PF13192.6	gi|169237218|ref|YP_001690424.1|	-	1.3e-05	25.1	0.0	2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_8	PF13905.6	gi|169237218|ref|YP_001690424.1|	-	1.4e-05	25.4	0.0	0.081	13.3	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|169237218|ref|YP_001690424.1|	-	3.4e-05	23.6	0.0	4.3e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_7	PF13899.6	gi|169237218|ref|YP_001690424.1|	-	5.1e-05	23.4	0.0	8.1e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
DUF836	PF05768.14	gi|169237218|ref|YP_001690424.1|	-	0.00044	20.6	0.0	0.00061	20.2	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
OST3_OST6	PF04756.13	gi|169237218|ref|YP_001690424.1|	-	0.0019	17.6	0.0	0.0023	17.4	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|169237218|ref|YP_001690424.1|	-	0.0027	17.6	0.0	0.029	14.3	0.0	2.0	1	1	0	1	1	1	1	AhpC/TSA	family
Glutaredoxin	PF00462.24	gi|169237218|ref|YP_001690424.1|	-	0.0055	16.9	0.0	0.01	16.1	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin
Redoxin	PF08534.10	gi|169237218|ref|YP_001690424.1|	-	0.0072	16.0	0.1	1	9.1	0.0	2.1	1	1	1	2	2	2	1	Redoxin
Thioredoxin_5	PF13743.6	gi|169237218|ref|YP_001690424.1|	-	0.015	15.0	0.0	0.02	14.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin
DUF953	PF06110.11	gi|169237218|ref|YP_001690424.1|	-	0.084	12.5	0.1	1	9.0	0.1	2.1	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
Pyr_redox_2	PF07992.14	gi|169237219|ref|YP_001690425.1|	-	4e-26	91.9	0.0	4.5e-26	91.8	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|169237219|ref|YP_001690425.1|	-	1.9e-15	57.1	0.1	1.1e-13	51.5	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|169237219|ref|YP_001690425.1|	-	9.8e-12	44.7	0.1	4.1e-08	32.8	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|169237219|ref|YP_001690425.1|	-	2.9e-08	33.2	1.0	6.1e-05	22.3	0.3	2.3	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|169237219|ref|YP_001690425.1|	-	2.4e-06	27.4	2.3	0.0021	17.7	0.6	3.0	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|169237219|ref|YP_001690425.1|	-	5.2e-06	26.1	1.3	0.00014	21.3	0.4	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|169237219|ref|YP_001690425.1|	-	4.9e-05	22.7	0.1	0.0065	15.7	0.0	2.2	2	0	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.6	gi|169237219|ref|YP_001690425.1|	-	7.8e-05	22.8	3.8	0.00018	21.6	0.1	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|169237219|ref|YP_001690425.1|	-	0.00018	20.7	0.1	0.0075	15.5	0.0	2.1	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|169237219|ref|YP_001690425.1|	-	0.00029	19.7	0.1	0.45	9.2	0.1	3.0	3	0	0	3	3	3	1	HI0933-like	protein
GIDA	PF01134.22	gi|169237219|ref|YP_001690425.1|	-	0.00063	18.9	0.1	0.44	9.6	0.1	3.0	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|169237219|ref|YP_001690425.1|	-	0.0015	18.9	0.0	0.007	16.8	0.0	1.9	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|169237219|ref|YP_001690425.1|	-	0.055	12.8	0.3	2.8	7.2	0.1	2.5	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|169237219|ref|YP_001690425.1|	-	0.082	12.1	0.3	3.5	6.8	0.0	2.4	2	1	1	3	3	3	0	FAD	binding	domain
Phage_integrase	PF00589.22	gi|169237220|ref|YP_001690426.1|	-	2.1e-11	43.9	0.0	1.2e-09	38.2	0.0	3.2	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|169237220|ref|YP_001690426.1|	-	0.00012	22.3	0.6	0.0005	20.3	0.0	2.2	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|169237220|ref|YP_001690426.1|	-	0.0036	17.8	0.0	0.0072	16.8	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|169237220|ref|YP_001690426.1|	-	0.073	13.4	0.0	0.15	12.4	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Chordopox_A13L	PF05961.11	gi|169237223|ref|YP_001690429.1|	-	0.032	14.5	0.4	0.037	14.3	0.4	1.1	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
DUF1206	PF06724.11	gi|169237223|ref|YP_001690429.1|	-	0.04	14.0	1.7	0.044	13.9	1.7	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1206)
DUF4051	PF13260.6	gi|169237223|ref|YP_001690429.1|	-	0.7	9.7	3.5	0.77	9.5	3.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
FMN_dh	PF01070.18	gi|169237224|ref|YP_001690430.1|	-	2.5e-28	99.1	5.2	1.6e-18	66.9	5.5	2.2	1	1	0	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|169237224|ref|YP_001690430.1|	-	0.00018	20.6	8.8	0.022	13.8	0.3	3.4	4	0	0	4	4	4	3	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.17	gi|169237224|ref|YP_001690430.1|	-	0.00034	19.9	2.9	0.00065	18.9	1.9	1.9	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
TrmB	PF01978.19	gi|169237225|ref|YP_001690431.1|	-	5.6e-09	35.8	0.1	5.4e-06	26.2	0.1	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|169237225|ref|YP_001690431.1|	-	2e-08	34.1	0.0	1.2e-05	25.3	0.0	2.5	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|169237225|ref|YP_001690431.1|	-	2.8e-07	30.3	0.0	0.0011	18.8	0.0	2.6	3	0	0	3	3	3	2	Bacterial	regulatory	protein,	arsR	family
HTH_29	PF13551.6	gi|169237225|ref|YP_001690431.1|	-	4.5e-07	29.8	0.0	0.017	15.2	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|169237225|ref|YP_001690431.1|	-	3.2e-06	26.8	0.1	0.039	13.8	0.0	2.4	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|169237225|ref|YP_001690431.1|	-	5e-05	23.1	0.0	0.025	14.5	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|169237225|ref|YP_001690431.1|	-	0.00015	21.3	0.0	0.62	9.7	0.0	2.8	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.19	gi|169237225|ref|YP_001690431.1|	-	0.00018	21.6	0.5	0.0024	18.0	0.1	2.3	1	1	1	2	2	2	1	Ferric	uptake	regulator	family
HTH_11	PF08279.12	gi|169237225|ref|YP_001690431.1|	-	0.00045	20.1	0.1	0.0047	16.8	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.7	gi|169237225|ref|YP_001690431.1|	-	0.00048	20.0	0.0	0.14	12.1	0.0	2.3	2	0	0	2	2	2	1	MarR	family
Rrf2	PF02082.20	gi|169237225|ref|YP_001690431.1|	-	0.0007	19.9	0.0	0.16	12.3	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_28	PF13518.6	gi|169237225|ref|YP_001690431.1|	-	0.0017	18.5	0.0	1.1	9.4	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
PadR	PF03551.14	gi|169237225|ref|YP_001690431.1|	-	0.0033	17.3	0.4	0.02	14.9	0.1	2.3	3	0	0	3	3	2	1	Transcriptional	regulator	PadR-like	family
HTH_36	PF13730.6	gi|169237225|ref|YP_001690431.1|	-	0.0036	17.2	0.0	0.0088	16.0	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|169237225|ref|YP_001690431.1|	-	0.0052	16.8	0.2	2.6	8.2	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
DUF2513	PF10711.9	gi|169237225|ref|YP_001690431.1|	-	0.01	16.2	0.1	0.025	14.9	0.1	1.6	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_DeoR	PF08220.12	gi|169237225|ref|YP_001690431.1|	-	0.013	15.3	0.2	0.31	10.8	0.0	2.7	3	0	0	3	3	3	0	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|169237225|ref|YP_001690431.1|	-	0.025	15.1	0.2	0.41	11.2	0.2	2.5	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|169237225|ref|YP_001690431.1|	-	0.029	14.2	0.0	5.7	6.9	0.0	2.3	2	0	0	2	2	2	0	Homeodomain-like	domain
DUF2250	PF10007.9	gi|169237225|ref|YP_001690431.1|	-	0.046	13.8	0.0	0.082	13.0	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Ribosomal_S25	PF03297.15	gi|169237225|ref|YP_001690431.1|	-	0.074	13.3	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
HTH_17	PF12728.7	gi|169237225|ref|YP_001690431.1|	-	0.096	12.9	0.0	10	6.4	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
DDE_Tnp_IS66	PF03050.14	gi|169237227|ref|YP_001690433.1|	-	1.3e-47	162.7	0.1	1.3e-47	162.7	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|169237227|ref|YP_001690433.1|	-	1.6e-05	25.2	4.6	5.1e-05	23.6	4.6	1.9	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
PKcGMP_CC	PF16808.5	gi|169237227|ref|YP_001690433.1|	-	0.00013	21.7	11.2	0.00042	20.1	11.2	1.9	1	0	0	1	1	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Med4	PF10018.9	gi|169237227|ref|YP_001690433.1|	-	0.008	15.9	0.8	0.018	14.7	0.8	1.6	1	0	0	1	1	1	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
Lebercilin	PF15619.6	gi|169237227|ref|YP_001690433.1|	-	0.0097	15.6	4.1	0.022	14.4	4.1	1.5	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
ERM	PF00769.19	gi|169237227|ref|YP_001690433.1|	-	0.011	15.5	2.9	0.025	14.4	2.4	1.8	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
DivIC	PF04977.15	gi|169237227|ref|YP_001690433.1|	-	0.016	14.9	1.8	0.081	12.7	1.8	2.2	1	0	0	1	1	1	0	Septum	formation	initiator
Tropomyosin_1	PF12718.7	gi|169237227|ref|YP_001690433.1|	-	0.018	15.2	2.3	0.041	14.0	2.3	1.5	1	0	0	1	1	1	0	Tropomyosin	like
SPATA24	PF15175.6	gi|169237227|ref|YP_001690433.1|	-	0.018	14.9	0.6	0.036	14.0	0.6	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
CCDC-167	PF15188.6	gi|169237227|ref|YP_001690433.1|	-	0.044	14.1	2.0	0.044	14.1	2.0	1.8	2	0	0	2	2	1	0	Coiled-coil	domain-containing	protein	167
ATG16	PF08614.11	gi|169237227|ref|YP_001690433.1|	-	0.055	13.7	1.0	0.055	13.7	1.0	2.4	3	0	0	3	3	3	0	Autophagy	protein	16	(ATG16)
HSBP1	PF06825.12	gi|169237227|ref|YP_001690433.1|	-	0.09	12.6	3.7	0.13	12.2	1.2	2.2	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
Prefoldin_2	PF01920.20	gi|169237227|ref|YP_001690433.1|	-	0.11	12.4	3.6	0.26	11.3	3.6	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
DDE_Tnp_IS240	PF13610.6	gi|169237227|ref|YP_001690433.1|	-	0.13	12.5	1.1	0.21	11.8	0.0	1.9	2	1	0	2	2	2	0	DDE	domain
FTA4	PF13093.6	gi|169237227|ref|YP_001690433.1|	-	0.14	12.0	3.5	0.51	10.2	0.5	2.4	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
HOOK	PF05622.12	gi|169237227|ref|YP_001690433.1|	-	0.16	10.1	3.5	0.25	9.5	3.5	1.2	1	0	0	1	1	1	0	HOOK	protein
SlyX	PF04102.12	gi|169237227|ref|YP_001690433.1|	-	0.18	12.4	3.6	0.81	10.3	3.6	2.1	1	0	0	1	1	1	0	SlyX
UPF0449	PF15136.6	gi|169237227|ref|YP_001690433.1|	-	0.27	11.7	6.3	2.8	8.5	2.1	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0449
zf-FPG_IleRS	PF06827.14	gi|169237227|ref|YP_001690433.1|	-	0.29	11.0	4.4	11	6.0	0.2	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
XhlA	PF10779.9	gi|169237227|ref|YP_001690433.1|	-	7.7	6.8	7.9	0.31	11.3	2.0	1.7	2	0	0	2	2	1	0	Haemolysin	XhlA
AAA_31	PF13614.6	gi|169237229|ref|YP_001690435.1|	-	3.7e-27	95.4	0.0	5.5e-27	94.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|169237229|ref|YP_001690435.1|	-	3.8e-14	52.8	0.0	6.2e-14	52.2	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|169237229|ref|YP_001690435.1|	-	1.2e-11	44.5	0.0	6.4e-11	42.2	0.0	1.9	1	1	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|169237229|ref|YP_001690435.1|	-	4.2e-09	36.2	0.0	1.5e-07	31.1	0.1	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|169237229|ref|YP_001690435.1|	-	1.5e-06	27.7	0.3	0.0038	16.5	0.2	2.3	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|169237229|ref|YP_001690435.1|	-	1.5e-06	27.7	0.1	2.6e-06	26.9	0.1	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|169237229|ref|YP_001690435.1|	-	7.9e-05	22.2	0.0	0.0041	16.6	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|169237229|ref|YP_001690435.1|	-	0.011	15.6	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_18	PF13238.6	gi|169237229|ref|YP_001690435.1|	-	0.059	13.9	0.0	0.57	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|169237229|ref|YP_001690435.1|	-	0.18	11.7	0.0	0.34	10.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AbiEii	PF08843.11	gi|169237230|ref|YP_001690436.1|	-	2e-40	139.3	0.6	2.4e-40	139.0	0.6	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
AbiEi_1	PF09407.10	gi|169237231|ref|YP_001690437.1|	-	3.4e-11	43.6	0.3	1.3e-09	38.5	0.1	2.2	2	0	0	2	2	2	1	AbiEi	antitoxin	C-terminal	domain
AbiEi_4	PF13338.6	gi|169237231|ref|YP_001690437.1|	-	5.9e-08	32.7	0.2	1.7e-07	31.3	0.1	1.9	2	0	0	2	2	2	1	Transcriptional	regulator,	AbiEi	antitoxin
MarR_2	PF12802.7	gi|169237231|ref|YP_001690437.1|	-	0.00096	19.0	0.2	0.0024	17.7	0.2	1.7	1	0	0	1	1	1	1	MarR	family
AbiEi_3_N	PF17194.4	gi|169237231|ref|YP_001690437.1|	-	0.019	15.0	0.0	0.14	12.2	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin	N-terminal	domain
Fe_dep_repress	PF01325.19	gi|169237231|ref|YP_001690437.1|	-	0.052	13.8	0.0	1	9.6	0.0	2.9	3	0	0	3	3	3	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|169237231|ref|YP_001690437.1|	-	0.11	12.2	0.0	0.29	10.9	0.0	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|169237231|ref|YP_001690437.1|	-	0.13	12.1	0.3	1.2	9.0	0.1	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|169237231|ref|YP_001690437.1|	-	0.13	12.7	0.0	0.35	11.2	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
TRAM	PF01938.20	gi|169237232|ref|YP_001690438.1|	-	8.8e-16	57.7	1.6	8.8e-16	57.7	1.6	1.8	3	0	0	3	3	3	1	TRAM	domain
AAA_22	PF13401.6	gi|169237233|ref|YP_001690439.1|	-	1.7e-10	41.3	0.0	2.4e-09	37.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|169237233|ref|YP_001690439.1|	-	3.9e-10	40.4	1.7	5e-09	36.8	0.1	2.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|169237233|ref|YP_001690439.1|	-	1.2e-05	25.7	0.1	0.00037	20.9	0.0	3.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc_2	PF16193.5	gi|169237233|ref|YP_001690439.1|	-	2.5e-05	24.5	3.6	0.00031	21.0	1.4	2.5	2	0	0	2	2	2	1	AAA	C-terminal	domain
AAA_5	PF07728.14	gi|169237233|ref|YP_001690439.1|	-	0.00012	22.1	0.3	0.00089	19.3	0.0	2.5	2	1	1	3	3	3	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|169237233|ref|YP_001690439.1|	-	0.00022	21.2	0.7	0.0041	17.1	0.5	2.8	2	1	0	2	2	2	1	NTPase
AAA_18	PF13238.6	gi|169237233|ref|YP_001690439.1|	-	0.00025	21.6	0.0	0.0014	19.2	0.0	2.2	1	1	2	3	3	3	1	AAA	domain
Penicillinase_R	PF03965.16	gi|169237233|ref|YP_001690439.1|	-	0.0016	18.8	0.0	0.0049	17.2	0.0	1.7	1	0	0	1	1	1	1	Penicillinase	repressor
AAA_14	PF13173.6	gi|169237233|ref|YP_001690439.1|	-	0.004	17.2	0.1	0.0098	15.9	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|169237233|ref|YP_001690439.1|	-	0.0041	16.4	0.0	0.0067	15.7	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|169237233|ref|YP_001690439.1|	-	0.0059	17.0	0.0	0.017	15.5	0.0	1.9	1	1	0	1	1	1	1	RNA	helicase
ATPase_2	PF01637.18	gi|169237233|ref|YP_001690439.1|	-	0.0077	16.2	0.1	0.07	13.0	0.1	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|169237233|ref|YP_001690439.1|	-	0.037	13.7	0.0	0.12	12.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|169237233|ref|YP_001690439.1|	-	0.04	13.9	0.0	0.081	12.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Cdc6_C	PF09079.11	gi|169237233|ref|YP_001690439.1|	-	0.045	13.7	0.1	0.15	12.1	0.1	1.9	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
AAA_7	PF12775.7	gi|169237233|ref|YP_001690439.1|	-	0.047	13.2	0.0	0.091	12.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|169237233|ref|YP_001690439.1|	-	0.051	12.7	0.0	0.13	11.4	0.0	1.6	1	1	1	2	2	2	0	NB-ARC	domain
PRK	PF00485.18	gi|169237233|ref|YP_001690439.1|	-	0.055	13.2	0.0	0.13	12.0	0.0	1.7	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_33	PF13671.6	gi|169237233|ref|YP_001690439.1|	-	0.058	13.5	1.1	0.35	11.0	0.0	2.5	2	2	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.12	gi|169237233|ref|YP_001690439.1|	-	0.074	12.8	0.0	0.22	11.2	0.0	1.8	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
IstB_IS21	PF01695.17	gi|169237233|ref|YP_001690439.1|	-	0.074	12.8	1.0	1.4	8.7	0.4	2.7	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|169237233|ref|YP_001690439.1|	-	0.08	12.1	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_19	PF13245.6	gi|169237233|ref|YP_001690439.1|	-	0.12	12.7	0.1	0.3	11.4	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
SRAP	PF02586.14	gi|169237235|ref|YP_001690441.1|	-	1.5e-62	211.0	0.0	1.7e-62	210.9	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
RHH_1	PF01402.21	gi|169237236|ref|YP_001690442.1|	-	0.011	15.6	4.4	0.021	14.7	1.1	2.6	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|169237236|ref|YP_001690442.1|	-	0.059	13.3	0.0	0.15	12.0	0.0	1.7	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
DUF4250	PF14056.6	gi|169237236|ref|YP_001690442.1|	-	0.076	13.0	0.1	0.1	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
CorA	PF01544.18	gi|169237238|ref|YP_001690444.1|	-	0.00025	20.5	1.1	0.0003	20.2	1.1	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
DUF4140	PF13600.6	gi|169237238|ref|YP_001690444.1|	-	0.056	13.9	1.4	0.16	12.4	0.6	1.8	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
ATG16	PF08614.11	gi|169237238|ref|YP_001690444.1|	-	0.081	13.1	3.8	0.25	11.5	3.7	1.7	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
MRP-L28	PF09812.9	gi|169237238|ref|YP_001690444.1|	-	0.096	12.8	1.4	11	6.1	0.3	2.0	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L28
XhlA	PF10779.9	gi|169237238|ref|YP_001690444.1|	-	0.12	12.5	1.6	0.2	11.9	1.6	1.3	1	0	0	1	1	1	0	Haemolysin	XhlA
DUF241	PF03087.14	gi|169237238|ref|YP_001690444.1|	-	0.57	10.0	2.2	2.8	7.7	0.2	2.0	1	1	1	2	2	2	0	Arabidopsis	protein	of	unknown	function
DNA_pol_B	PF00136.21	gi|169237239|ref|YP_001690445.1|	-	1.8e-25	89.6	0.0	4.5e-25	88.3	0.0	1.6	1	1	0	1	1	1	1	DNA	polymerase	family	B
Cdc6_C	PF09079.11	gi|169237240|ref|YP_001690446.1|	-	1.2e-15	57.3	0.0	2.7e-15	56.1	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|169237240|ref|YP_001690446.1|	-	8.5e-13	48.8	0.0	1.9e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|169237240|ref|YP_001690446.1|	-	2.3e-08	34.6	1.0	1.2e-07	32.3	0.2	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|169237240|ref|YP_001690446.1|	-	6.3e-05	23.0	0.0	0.00017	21.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
ATPase_2	PF01637.18	gi|169237240|ref|YP_001690446.1|	-	0.00018	21.5	0.1	0.00035	20.6	0.1	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|169237240|ref|YP_001690446.1|	-	0.00025	20.8	0.0	0.00047	19.9	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|169237240|ref|YP_001690446.1|	-	0.001	18.3	0.0	0.0017	17.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_30	PF13604.6	gi|169237240|ref|YP_001690446.1|	-	0.0013	18.5	0.0	0.0025	17.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|169237240|ref|YP_001690446.1|	-	0.0027	18.1	0.0	0.044	14.2	0.0	2.6	1	1	0	1	1	1	1	RNA	helicase
TniB	PF05621.11	gi|169237240|ref|YP_001690446.1|	-	0.0054	16.2	0.0	0.0094	15.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|169237240|ref|YP_001690446.1|	-	0.008	15.4	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_19	PF13245.6	gi|169237240|ref|YP_001690446.1|	-	0.013	15.9	0.0	0.028	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF2791	PF10923.8	gi|169237240|ref|YP_001690446.1|	-	0.016	14.1	0.0	0.43	9.4	0.0	2.2	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_7	PF12775.7	gi|169237240|ref|YP_001690446.1|	-	0.042	13.4	0.0	0.076	12.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|169237240|ref|YP_001690446.1|	-	0.044	14.2	0.2	0.31	11.5	0.2	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Adeno_IVa2	PF02456.15	gi|169237240|ref|YP_001690446.1|	-	0.045	12.5	0.0	0.076	11.8	0.0	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_14	PF13173.6	gi|169237240|ref|YP_001690446.1|	-	0.048	13.7	0.1	0.24	11.4	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase_C	PF13335.6	gi|169237240|ref|YP_001690446.1|	-	0.061	14.0	2.3	0.3	11.7	0.6	2.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
ResIII	PF04851.15	gi|169237240|ref|YP_001690446.1|	-	0.072	13.1	0.1	0.44	10.5	0.0	2.3	3	0	0	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
Torsin	PF06309.11	gi|169237240|ref|YP_001690446.1|	-	0.1	12.7	0.0	0.41	10.7	0.0	1.9	2	0	0	2	2	2	0	Torsin
AAA_32	PF13654.6	gi|169237240|ref|YP_001690446.1|	-	0.16	10.7	0.7	6.5	5.4	0.3	2.1	2	0	0	2	2	2	0	AAA	domain
DUF1043	PF06295.12	gi|169237241|ref|YP_001690447.1|	-	0.064	13.3	0.2	0.085	12.9	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1043)
DUF2274	PF10038.9	gi|169237241|ref|YP_001690447.1|	-	0.18	12.3	1.0	5.1	7.6	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
PurA	PF04845.13	gi|169237241|ref|YP_001690447.1|	-	0.31	10.3	1.1	0.57	9.5	0.7	1.5	1	1	1	2	2	2	0	PurA	ssDNA	and	RNA-binding	protein
SWIM	PF04434.17	gi|169237242|ref|YP_001690448.1|	-	0.0014	18.2	0.1	0.0029	17.2	0.1	1.5	1	0	0	1	1	1	1	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|169237243|ref|YP_001690449.1|	-	0.00085	19.2	0.0	0.0015	18.5	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
DUF2268	PF10026.9	gi|169237243|ref|YP_001690449.1|	-	0.0051	16.4	0.1	0.013	15.1	0.0	1.6	2	0	0	2	2	2	1	Predicted	Zn-dependent	protease	(DUF2268)
SprT-like	PF10263.9	gi|169237243|ref|YP_001690449.1|	-	0.017	14.9	0.2	0.092	12.6	0.1	2.0	2	0	0	2	2	2	0	SprT-like	family
NAD_binding_10	PF13460.6	gi|169237248|ref|YP_001690454.1|	-	6.2e-43	146.8	3.6	7.2e-43	146.6	3.6	1.0	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|169237248|ref|YP_001690454.1|	-	1.8e-14	53.9	0.1	2.1e-14	53.7	0.1	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|169237248|ref|YP_001690454.1|	-	6.2e-11	42.2	0.0	9.8e-11	41.6	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|169237248|ref|YP_001690454.1|	-	1.7e-05	24.0	0.0	2.3e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|169237248|ref|YP_001690454.1|	-	0.00091	18.5	0.0	0.04	13.1	0.0	2.1	1	1	1	2	2	2	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|169237248|ref|YP_001690454.1|	-	0.0024	17.0	0.6	0.0038	16.4	0.5	1.6	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
TrkA_N	PF02254.18	gi|169237248|ref|YP_001690454.1|	-	0.004	17.4	1.1	0.0093	16.2	0.7	1.8	1	1	1	2	2	2	1	TrkA-N	domain
DapB_N	PF01113.20	gi|169237248|ref|YP_001690454.1|	-	0.0075	16.4	1.1	0.015	15.4	1.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
ChapFlgA	PF13144.6	gi|169237248|ref|YP_001690454.1|	-	0.12	12.4	1.9	0.47	10.5	0.3	2.2	2	1	0	2	2	2	0	Chaperone	for	flagella	basal	body	P-ring	formation
ApbA	PF02558.16	gi|169237248|ref|YP_001690454.1|	-	0.12	12.0	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Lar_restr_allev	PF14354.6	gi|169237249|ref|YP_001690455.1|	-	0.0016	18.8	0.8	0.0016	18.8	0.8	1.7	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
RNA_POL_M_15KD	PF02150.16	gi|169237249|ref|YP_001690455.1|	-	0.0096	15.8	0.3	0.0096	15.8	0.3	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1	PF03811.13	gi|169237249|ref|YP_001690455.1|	-	0.026	14.2	0.3	0.052	13.3	0.3	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
TFIIS_C	PF01096.18	gi|169237249|ref|YP_001690455.1|	-	0.12	12.3	1.6	0.3	11.0	1.6	1.7	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin_2	PF18073.1	gi|169237249|ref|YP_001690455.1|	-	0.15	11.8	0.3	0.15	11.8	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Phage_holin_3_6	PF07332.11	gi|169237251|ref|YP_001690457.1|	-	0.001	19.1	5.6	0.0011	19.0	5.6	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
MFS_1	PF07690.16	gi|169237257|ref|YP_001690463.1|	-	3.1e-46	157.9	56.3	1.5e-28	99.7	29.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|169237257|ref|YP_001690463.1|	-	2.2e-11	42.9	28.5	3.2e-11	42.3	28.5	1.1	1	0	0	1	1	1	1	Transmembrane	secretion	effector
Sugar_tr	PF00083.24	gi|169237257|ref|YP_001690463.1|	-	6.1e-05	22.1	25.3	0.015	14.2	9.8	2.3	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
OATP	PF03137.20	gi|169237257|ref|YP_001690463.1|	-	0.00051	18.5	19.7	0.024	13.0	1.8	3.2	2	1	1	3	3	3	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_1_like	PF12832.7	gi|169237257|ref|YP_001690463.1|	-	2.9	6.6	19.8	70	2.1	0.0	3.1	1	1	1	2	2	2	0	MFS_1	like	family
DUF4199	PF13858.6	gi|169237258|ref|YP_001690464.1|	-	0.011	16.2	7.8	0.024	15.0	7.8	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
CPP1-like	PF11833.8	gi|169237258|ref|YP_001690464.1|	-	0.11	12.1	4.0	0.14	11.8	4.0	1.2	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
YtpI	PF14007.6	gi|169237258|ref|YP_001690464.1|	-	0.35	11.0	9.3	1	9.6	0.3	2.0	1	1	1	2	2	2	0	YtpI-like	protein
DUF5353	PF17304.2	gi|169237258|ref|YP_001690464.1|	-	0.51	10.1	3.7	0.39	10.5	0.6	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5353)
HTH_20	PF12840.7	gi|169237259|ref|YP_001690465.1|	-	3.9e-12	46.1	0.3	5.3e-12	45.6	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|169237259|ref|YP_001690465.1|	-	1.5e-05	24.7	0.1	2.8e-05	23.8	0.0	1.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|169237259|ref|YP_001690465.1|	-	0.00021	21.1	0.0	0.00032	20.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|169237259|ref|YP_001690465.1|	-	0.00023	21.0	0.0	0.00045	20.0	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF1492	PF07374.11	gi|169237259|ref|YP_001690465.1|	-	0.0041	17.2	0.0	0.0073	16.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1492)
HTH_5	PF01022.20	gi|169237259|ref|YP_001690465.1|	-	0.025	14.4	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|169237259|ref|YP_001690465.1|	-	0.065	13.2	0.0	0.099	12.6	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|169237259|ref|YP_001690465.1|	-	0.075	13.4	0.0	0.1	12.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
FUR	PF01475.19	gi|169237259|ref|YP_001690465.1|	-	0.084	13.0	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_7	PF02796.15	gi|169237259|ref|YP_001690465.1|	-	0.091	12.9	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
DprA_WH	PF17782.1	gi|169237259|ref|YP_001690465.1|	-	0.091	12.9	1.2	0.42	10.8	0.4	2.2	2	0	0	2	2	2	0	DprA	winged	helix	domain
Phage_CI_repr	PF07022.13	gi|169237259|ref|YP_001690465.1|	-	0.11	12.6	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
TrmB	PF01978.19	gi|169237260|ref|YP_001690466.1|	-	0.0012	18.7	0.0	0.0019	18.0	0.0	1.3	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|169237260|ref|YP_001690466.1|	-	0.0017	18.7	0.0	0.003	17.9	0.0	1.3	1	1	0	1	1	1	1	Penicillinase	repressor
Fe_dep_repress	PF01325.19	gi|169237260|ref|YP_001690466.1|	-	0.0019	18.3	0.0	0.0027	17.9	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|169237260|ref|YP_001690466.1|	-	0.0082	16.0	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|169237260|ref|YP_001690466.1|	-	0.035	14.6	0.1	0.071	13.6	0.1	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.6	gi|169237260|ref|YP_001690466.1|	-	0.038	14.1	0.1	0.083	13.0	0.1	1.8	1	1	0	1	1	1	0	Mrr	N-terminal	domain
Rrf2	PF02082.20	gi|169237260|ref|YP_001690466.1|	-	0.046	14.1	0.0	0.083	13.2	0.0	1.6	1	1	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.6	gi|169237260|ref|YP_001690466.1|	-	0.057	13.0	0.1	0.1	12.1	0.1	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|169237260|ref|YP_001690466.1|	-	0.072	13.0	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|169237260|ref|YP_001690466.1|	-	0.076	13.0	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|169237260|ref|YP_001690466.1|	-	0.082	12.9	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
DDE_Tnp_1	PF01609.21	gi|169237261|ref|YP_001690467.1|	-	1.9e-29	102.9	0.1	2.4e-29	102.5	0.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|169237261|ref|YP_001690467.1|	-	0.0033	15.7	0.1	0.01	14.1	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
DDE_Tnp_2	PF04693.12	gi|169237261|ref|YP_001690467.1|	-	0.062	12.5	0.1	0.084	12.1	0.1	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Phage_int_SAM_5	PF13102.6	gi|169237263|ref|YP_001690469.1|	-	1.9e-06	28.1	0.0	4.9e-06	26.8	0.0	1.7	1	1	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|169237263|ref|YP_001690469.1|	-	0.0015	18.8	0.1	0.038	14.3	0.1	2.9	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|169237263|ref|YP_001690469.1|	-	0.024	15.1	0.0	0.057	13.9	0.0	1.6	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
RHH_6	PF16762.5	gi|169237263|ref|YP_001690469.1|	-	0.026	15.1	0.1	1.8	9.2	0.0	2.6	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
Phage_integrase	PF00589.22	gi|169237263|ref|YP_001690469.1|	-	0.026	14.3	0.0	0.18	11.6	0.0	2.2	1	1	0	1	1	1	0	Phage	integrase	family
FUSC	PF04632.12	gi|169237263|ref|YP_001690469.1|	-	0.92	8.0	3.2	1.5	7.2	3.2	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Penicillinase_R	PF03965.16	gi|169237266|ref|YP_001690472.1|	-	0.00091	19.6	0.0	0.0016	18.8	0.0	1.5	1	0	0	1	1	1	1	Penicillinase	repressor
GPP34	PF05719.11	gi|169237266|ref|YP_001690472.1|	-	0.0058	16.7	1.3	0.0084	16.2	0.9	1.4	1	1	0	1	1	1	1	Golgi	phosphoprotein	3	(GPP34)
SMC_Nse1	PF07574.13	gi|169237266|ref|YP_001690472.1|	-	0.0072	16.2	0.4	0.015	15.2	0.1	1.7	2	1	0	2	2	2	1	Nse1	non-SMC	component	of	SMC5-6	complex
RP-C	PF03428.13	gi|169237266|ref|YP_001690472.1|	-	0.013	15.2	0.1	0.022	14.4	0.1	1.5	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
MerR_1	PF13411.6	gi|169237266|ref|YP_001690472.1|	-	0.02	14.9	0.2	6	7.0	0.0	2.3	1	1	1	2	2	2	0	MerR	HTH	family	regulatory	protein
TrmB	PF01978.19	gi|169237266|ref|YP_001690472.1|	-	0.022	14.6	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
EAP30	PF04157.16	gi|169237266|ref|YP_001690472.1|	-	0.027	13.7	1.0	0.029	13.6	0.1	1.5	2	0	0	2	2	2	0	EAP30/Vps36	family
GntR	PF00392.21	gi|169237266|ref|YP_001690472.1|	-	0.049	13.3	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|169237266|ref|YP_001690472.1|	-	0.095	12.6	0.5	0.68	9.9	0.0	2.7	3	1	1	4	4	4	0	MarR	family
DDE_Tnp_1	PF01609.21	gi|169237268|ref|YP_001690474.1|	-	5.8e-05	22.8	0.1	0.00055	19.6	0.1	2.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4175	PF13779.6	gi|169237269|ref|YP_001690475.1|	-	0.34	8.8	1.8	0.48	8.3	1.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
Wzy_C	PF04932.15	gi|169237269|ref|YP_001690475.1|	-	1.6	8.4	7.6	28	4.3	7.6	2.0	1	1	0	1	1	1	0	O-Antigen	ligase
AAA_31	PF13614.6	gi|169237271|ref|YP_001690477.1|	-	3e-41	141.3	0.0	3.8e-41	140.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|169237271|ref|YP_001690477.1|	-	9.9e-15	54.7	0.0	1.1e-14	54.5	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|169237271|ref|YP_001690477.1|	-	4.3e-09	36.2	0.4	1.8e-08	34.1	0.3	2.0	1	1	1	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|169237271|ref|YP_001690477.1|	-	1.1e-08	34.9	0.0	1.3e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|169237271|ref|YP_001690477.1|	-	1.4e-06	27.8	2.7	0.00014	21.2	0.1	2.3	1	1	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|169237271|ref|YP_001690477.1|	-	1.3e-05	24.8	0.1	3.9e-05	23.2	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|169237271|ref|YP_001690477.1|	-	1.4e-05	24.4	0.1	6.3e-05	22.3	0.0	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|169237271|ref|YP_001690477.1|	-	0.00035	19.9	0.1	0.0049	16.2	0.0	2.1	2	0	0	2	2	2	1	VirC1	protein
HalX	PF08663.10	gi|169237272|ref|YP_001690478.1|	-	0.12	12.8	4.7	0.15	12.4	4.7	1.2	1	0	0	1	1	1	0	HalX	domain
PadR	PF03551.14	gi|169237274|ref|YP_001690480.1|	-	4.9e-16	58.5	0.5	5.8e-16	58.2	0.5	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|169237274|ref|YP_001690480.1|	-	0.0019	18.2	0.0	0.0024	17.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|169237274|ref|YP_001690480.1|	-	0.013	15.4	0.5	5.6	6.9	0.2	3.0	2	1	0	2	2	2	0	MarR	family
DUF1495	PF07381.11	gi|169237274|ref|YP_001690480.1|	-	0.028	14.2	0.0	0.035	13.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DDE_Tnp_1	PF01609.21	gi|169237275|ref|YP_001690481.1|	-	2.7e-31	108.9	0.2	3.5e-31	108.5	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|169237275|ref|YP_001690481.1|	-	0.0029	17.9	0.1	0.0078	16.5	0.1	1.7	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
DDE_Tnp_1_4	PF13701.6	gi|169237275|ref|YP_001690481.1|	-	0.016	13.5	0.0	0.043	12.1	0.0	1.6	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
DDE_Tnp_IS1595	PF12762.7	gi|169237276|ref|YP_001690482.1|	-	4.3e-22	78.8	0.0	6.8e-22	78.1	0.0	1.3	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|169237276|ref|YP_001690482.1|	-	6.8e-09	35.6	1.6	1.4e-08	34.6	1.6	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|169237276|ref|YP_001690482.1|	-	1.6e-05	24.5	3.4	4.2e-05	23.2	3.4	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.9	gi|169237276|ref|YP_001690482.1|	-	0.00037	20.5	0.0	0.00066	19.7	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
CoiA	PF06054.11	gi|169237276|ref|YP_001690482.1|	-	0.031	13.4	0.0	0.052	12.7	0.0	1.4	1	0	0	1	1	1	0	Competence	protein	CoiA-like	family
Sigma70_r4_2	PF08281.12	gi|169237276|ref|YP_001690482.1|	-	0.073	12.8	0.1	14	5.4	0.0	2.5	2	0	0	2	2	2	0	Sigma-70,	region	4
DpnI	PF06044.12	gi|169237276|ref|YP_001690482.1|	-	0.1	12.3	0.2	0.17	11.5	0.2	1.3	1	0	0	1	1	1	0	Dam-replacing	family
zinc-ribbons_6	PF07191.12	gi|169237276|ref|YP_001690482.1|	-	0.14	12.2	0.3	0.26	11.3	0.3	1.4	1	0	0	1	1	1	0	zinc-ribbons
DUF2800	PF10926.8	gi|169237278|ref|YP_001690484.1|	-	0.052	12.8	0.0	0.077	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2800)
PRiA4_ORF3	PF07929.11	gi|169237279|ref|YP_001690485.1|	-	3.7e-16	59.3	0.0	4.5e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DUF790	PF05626.11	gi|169237280|ref|YP_001690486.1|	-	2.4e-144	480.9	0.0	2.7e-144	480.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
ResIII	PF04851.15	gi|169237281|ref|YP_001690487.1|	-	1.1e-24	87.3	0.0	8e-24	84.5	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|169237281|ref|YP_001690487.1|	-	2.3e-23	82.7	0.2	3.5e-23	82.1	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|169237281|ref|YP_001690487.1|	-	3.7e-18	65.9	0.1	1.2e-17	64.3	0.1	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|169237281|ref|YP_001690487.1|	-	2.8e-12	46.3	1.3	9.3e-12	44.7	0.1	2.6	2	0	0	2	2	2	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|169237281|ref|YP_001690487.1|	-	7.6e-09	35.6	0.0	1.7e-08	34.5	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|169237281|ref|YP_001690487.1|	-	0.0026	17.5	0.0	0.17	11.6	0.0	2.8	3	0	0	3	3	3	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|169237281|ref|YP_001690487.1|	-	0.0062	16.8	0.1	0.15	12.3	0.0	2.9	2	2	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|169237281|ref|YP_001690487.1|	-	0.073	12.5	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
Helicase_C_2	PF13307.6	gi|169237281|ref|YP_001690487.1|	-	0.12	12.5	0.2	2	8.5	0.0	2.6	1	1	1	2	2	2	0	Helicase	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|169237282|ref|YP_001690488.1|	-	0.0045	16.3	9.2	0.23	10.9	0.2	3.7	4	0	0	4	4	4	2	zinc-ribbon	domain
DUF3268	PF11672.8	gi|169237282|ref|YP_001690488.1|	-	0.072	13.4	2.2	0.56	10.6	0.1	2.5	3	0	0	3	3	3	0	zinc-finger-containing	domain
VP_N-CPKC	PF11475.8	gi|169237282|ref|YP_001690488.1|	-	0.14	12.1	0.2	0.14	12.1	0.2	2.3	3	0	0	3	3	3	0	Virion	protein	N	terminal	domain
DZR	PF12773.7	gi|169237282|ref|YP_001690488.1|	-	0.17	11.9	5.9	11	6.2	2.9	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|169237282|ref|YP_001690488.1|	-	0.47	10.4	6.7	15	5.6	0.2	3.4	3	0	0	3	3	3	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|169237282|ref|YP_001690488.1|	-	0.71	10.0	6.9	5.5	7.2	4.4	2.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
Ribosomal_L32p	PF01783.23	gi|169237282|ref|YP_001690488.1|	-	1.7	9.0	6.4	2.8	8.3	0.2	2.9	2	1	1	3	3	3	0	Ribosomal	L32p	protein	family
Terminase_GpA	PF05876.12	gi|169237282|ref|YP_001690488.1|	-	7.2	5.0	9.5	3.1	6.2	0.5	2.0	1	1	0	2	2	2	0	Phage	terminase	large	subunit	(GpA)
Coat_X	PF07552.11	gi|169237285|ref|YP_001690491.1|	-	3	7.7	6.7	4.1	7.3	3.7	2.4	2	1	1	3	3	3	0	Spore	Coat	Protein	X	and	V	domain
Eco57I	PF07669.11	gi|169237286|ref|YP_001690492.1|	-	7.7e-15	55.3	0.0	2e-14	53.9	0.0	1.6	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|169237286|ref|YP_001690492.1|	-	9.5e-13	48.1	0.0	2.3e-05	23.8	0.0	3.4	2	1	0	2	2	2	2	N-6	DNA	Methylase
TaqI_C	PF12950.7	gi|169237286|ref|YP_001690492.1|	-	6.4e-07	29.5	0.0	1.6e-06	28.1	0.0	1.7	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
MIP-T3_C	PF17749.1	gi|169237286|ref|YP_001690492.1|	-	0.046	13.7	0.1	0.15	12.0	0.1	1.9	1	0	0	1	1	1	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
DUF4404	PF14357.6	gi|169237286|ref|YP_001690492.1|	-	0.071	13.8	4.0	2.1	9.0	0.5	3.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
TSGP1	PF07771.11	gi|169237286|ref|YP_001690492.1|	-	0.19	11.9	0.1	1.2	9.3	0.0	2.3	2	0	0	2	2	2	0	Tick	salivary	peptide	group	1
Helicase_C	PF00271.31	gi|169237287|ref|YP_001690493.1|	-	6e-23	81.3	0.1	3.4e-22	78.9	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|169237287|ref|YP_001690493.1|	-	4e-18	65.3	0.0	1.6e-16	60.0	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|169237287|ref|YP_001690493.1|	-	2.1e-11	44.1	1.8	2.6e-11	43.8	0.0	2.1	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
RapA_C	PF12137.8	gi|169237287|ref|YP_001690493.1|	-	7e-07	28.6	0.0	7e-07	28.6	0.0	3.3	3	0	0	3	3	3	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|169237287|ref|YP_001690493.1|	-	3.2e-05	23.7	0.3	0.095	12.4	0.0	2.4	1	1	1	2	2	2	2	C-terminal	domain	on	Strawberry	notch	homologue
DEAD	PF00270.29	gi|169237287|ref|YP_001690493.1|	-	6.2e-05	22.8	0.0	0.00021	21.1	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_34	PF13872.6	gi|169237287|ref|YP_001690493.1|	-	0.012	14.5	0.0	0.033	13.1	0.0	1.7	1	1	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF3987	PF13148.6	gi|169237287|ref|YP_001690493.1|	-	0.27	10.2	9.2	1.5	7.8	8.0	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
PilJ	PF13675.6	gi|169237287|ref|YP_001690493.1|	-	0.42	10.6	9.3	2.1	8.4	1.2	2.9	2	0	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
TBP	PF00352.21	gi|169237288|ref|YP_001690494.1|	-	1.6e-40	136.9	0.0	4.3e-21	74.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|169237288|ref|YP_001690494.1|	-	0.0023	18.0	0.1	1.8	8.7	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Mntp	PF02659.15	gi|169237288|ref|YP_001690494.1|	-	0.0044	16.8	0.0	2.4	7.9	0.0	2.1	2	0	0	2	2	2	2	Putative	manganese	efflux	pump
Asp-Al_Ex	PF06826.12	gi|169237289|ref|YP_001690495.1|	-	7.8e-76	253.5	49.1	2.5e-41	141.3	21.7	2.0	2	0	0	2	2	2	2	Predicted	Permease	Membrane	Region
PadR	PF03551.14	gi|169237290|ref|YP_001690496.1|	-	7.4e-16	57.9	0.6	8.7e-16	57.7	0.6	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|169237290|ref|YP_001690496.1|	-	0.00069	19.6	0.0	0.00097	19.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|169237290|ref|YP_001690496.1|	-	0.027	14.3	0.0	0.033	14.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR_2	PF12802.7	gi|169237290|ref|YP_001690496.1|	-	0.048	13.6	0.3	23	5.0	0.0	2.8	2	1	0	3	3	3	0	MarR	family
TrmB	PF01978.19	gi|169237290|ref|YP_001690496.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|169237293|ref|YP_001690499.1|	-	0.019	14.9	0.0	2.1	8.3	0.0	2.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|169237293|ref|YP_001690499.1|	-	0.038	13.8	0.0	12	5.7	0.0	3.6	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|169237293|ref|YP_001690499.1|	-	0.063	13.4	4.4	6	7.0	0.0	4.0	4	0	0	4	4	4	0	Helix-turn-helix	domain
Phage_integrase	PF00589.22	gi|169237294|ref|YP_001690500.1|	-	1.9e-06	27.8	0.0	3.7e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
ZapA	PF05164.13	gi|169237294|ref|YP_001690500.1|	-	0.089	13.2	0.0	0.24	11.9	0.0	1.8	1	1	0	1	1	1	0	Cell	division	protein	ZapA
DZR	PF12773.7	gi|169237294|ref|YP_001690500.1|	-	0.11	12.6	0.6	0.31	11.1	0.3	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
DDE_Tnp_1	PF01609.21	gi|169237295|ref|YP_001690501.1|	-	2.7e-31	108.9	0.2	3.5e-31	108.5	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|169237295|ref|YP_001690501.1|	-	0.0029	17.9	0.1	0.0078	16.5	0.1	1.7	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
DDE_Tnp_1_4	PF13701.6	gi|169237295|ref|YP_001690501.1|	-	0.016	13.5	0.0	0.043	12.1	0.0	1.6	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
DDE_Tnp_IS1595	PF12762.7	gi|169237296|ref|YP_001690502.1|	-	4.3e-22	78.8	0.0	6.8e-22	78.1	0.0	1.3	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|169237296|ref|YP_001690502.1|	-	6.8e-09	35.6	1.6	1.4e-08	34.6	1.6	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|169237296|ref|YP_001690502.1|	-	1.6e-05	24.5	3.4	4.2e-05	23.2	3.4	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.9	gi|169237296|ref|YP_001690502.1|	-	0.00037	20.5	0.0	0.00066	19.7	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
CoiA	PF06054.11	gi|169237296|ref|YP_001690502.1|	-	0.031	13.4	0.0	0.052	12.7	0.0	1.4	1	0	0	1	1	1	0	Competence	protein	CoiA-like	family
Sigma70_r4_2	PF08281.12	gi|169237296|ref|YP_001690502.1|	-	0.073	12.8	0.1	14	5.4	0.0	2.5	2	0	0	2	2	2	0	Sigma-70,	region	4
DpnI	PF06044.12	gi|169237296|ref|YP_001690502.1|	-	0.1	12.3	0.2	0.17	11.5	0.2	1.3	1	0	0	1	1	1	0	Dam-replacing	family
zinc-ribbons_6	PF07191.12	gi|169237296|ref|YP_001690502.1|	-	0.14	12.2	0.3	0.26	11.3	0.3	1.4	1	0	0	1	1	1	0	zinc-ribbons
gpW	PF02831.15	gi|169237297|ref|YP_001690503.1|	-	0.014	15.3	2.0	0.017	15.0	0.1	2.1	3	1	1	4	4	4	0	gpW
PIN_9	PF18477.1	gi|169237298|ref|YP_001690504.1|	-	0.17	12.2	0.0	2.7	8.3	0.0	2.2	2	0	0	2	2	2	0	PIN	like	domain
MarR_2	PF12802.7	gi|169237301|ref|YP_001690507.1|	-	2e-06	27.6	0.0	3.2e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|169237301|ref|YP_001690507.1|	-	3.3e-05	23.4	0.0	4.3e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|169237301|ref|YP_001690507.1|	-	6.2e-05	23.0	0.0	0.00011	22.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|169237301|ref|YP_001690507.1|	-	6.8e-05	22.7	0.0	9.9e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|169237301|ref|YP_001690507.1|	-	0.0007	19.5	0.0	0.00098	19.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|169237301|ref|YP_001690507.1|	-	0.00077	19.1	0.0	0.0013	18.3	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Rrf2	PF02082.20	gi|169237301|ref|YP_001690507.1|	-	0.0014	18.9	0.0	0.0023	18.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|169237301|ref|YP_001690507.1|	-	0.0015	18.3	0.0	0.0028	17.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_27	PF13463.6	gi|169237301|ref|YP_001690507.1|	-	0.0015	19.0	0.0	0.0029	18.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|169237301|ref|YP_001690507.1|	-	0.0015	18.2	0.0	0.0018	18.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
Phage_antitermQ	PF06530.12	gi|169237301|ref|YP_001690507.1|	-	0.0038	17.1	0.0	0.0064	16.4	0.0	1.3	1	0	0	1	1	1	1	Phage	antitermination	protein	Q
RepL	PF05732.11	gi|169237301|ref|YP_001690507.1|	-	0.0045	16.4	0.0	0.006	16.0	0.0	1.1	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_Crp_2	PF13545.6	gi|169237301|ref|YP_001690507.1|	-	0.0052	16.7	0.0	0.0069	16.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|169237301|ref|YP_001690507.1|	-	0.0086	15.9	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|169237301|ref|YP_001690507.1|	-	0.0088	16.0	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Fe_dep_repress	PF01325.19	gi|169237301|ref|YP_001690507.1|	-	0.015	15.5	0.0	0.024	14.8	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|169237301|ref|YP_001690507.1|	-	0.041	13.7	0.1	0.074	12.9	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
GntR	PF00392.21	gi|169237301|ref|YP_001690507.1|	-	0.05	13.3	0.0	0.094	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Rio2_N	PF09202.11	gi|169237301|ref|YP_001690507.1|	-	0.1	12.8	0.0	0.21	11.8	0.0	1.4	2	0	0	2	2	1	0	Rio2,	N-terminal
LexA_DNA_bind	PF01726.16	gi|169237301|ref|YP_001690507.1|	-	0.12	12.2	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_29	PF13551.6	gi|169237301|ref|YP_001690507.1|	-	0.12	12.4	0.0	0.26	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
Terminase_5	PF06056.12	gi|169237301|ref|YP_001690507.1|	-	0.16	11.9	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
DZR	PF12773.7	gi|169237302|ref|YP_001690508.1|	-	0.0027	17.7	0.7	0.0039	17.2	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|169237302|ref|YP_001690508.1|	-	0.0035	17.2	1.2	0.0094	15.9	1.2	1.6	1	1	0	1	1	1	1	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|169237302|ref|YP_001690508.1|	-	0.0055	16.8	2.3	0.009	16.1	2.3	1.4	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|169237302|ref|YP_001690508.1|	-	0.015	14.7	2.1	2.2	7.8	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|169237302|ref|YP_001690508.1|	-	0.024	14.6	0.9	0.43	10.6	0.0	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DM	PF00751.18	gi|169237302|ref|YP_001690508.1|	-	0.056	13.3	1.3	0.8	9.7	0.1	2.0	2	0	0	2	2	2	0	DM	DNA	binding	domain
zf-ISL3	PF14690.6	gi|169237302|ref|YP_001690508.1|	-	0.17	12.5	3.7	4.7	8.0	0.5	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ACC	PF17848.1	gi|169237302|ref|YP_001690508.1|	-	0.48	10.6	3.9	4.7	7.4	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zinc_ribbon_2	PF13240.6	gi|169237304|ref|YP_001690510.1|	-	0.00044	19.9	2.7	0.48	10.2	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|169237304|ref|YP_001690510.1|	-	0.00057	19.2	4.9	0.069	12.6	1.1	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|169237304|ref|YP_001690510.1|	-	0.00058	19.9	1.0	0.94	9.6	0.0	2.2	2	0	0	2	2	2	2	Acetyl-coA	carboxylase	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|169237304|ref|YP_001690510.1|	-	0.002	17.6	1.0	0.033	13.7	1.0	2.1	1	1	0	1	1	1	1	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|169237304|ref|YP_001690510.1|	-	0.0025	17.4	5.2	0.78	9.4	2.5	2.7	2	1	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
DZR	PF12773.7	gi|169237304|ref|YP_001690510.1|	-	0.0025	17.8	0.2	0.0043	17.1	0.2	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
Cys_rich_CPXG	PF14255.6	gi|169237304|ref|YP_001690510.1|	-	0.0039	17.1	1.0	0.0064	16.4	1.0	1.3	1	1	0	1	1	1	1	Cysteine-rich	CPXCG
Zn-ribbon_8	PF09723.10	gi|169237304|ref|YP_001690510.1|	-	0.0044	17.1	0.8	1.8	8.7	0.1	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|169237304|ref|YP_001690510.1|	-	0.0059	16.5	1.9	0.098	12.6	2.1	2.0	1	1	1	2	2	2	2	Putative	transposase	DNA-binding	domain
Ogr_Delta	PF04606.12	gi|169237304|ref|YP_001690510.1|	-	0.0089	16.0	0.6	0.83	9.7	0.0	2.2	2	0	0	2	2	2	1	Ogr/Delta-like	zinc	finger
zf-C4_Topoisom	PF01396.19	gi|169237304|ref|YP_001690510.1|	-	0.016	15.0	1.1	1.6	8.6	0.1	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF4379	PF14311.6	gi|169237304|ref|YP_001690510.1|	-	0.02	15.3	1.9	0.025	15.0	1.9	1.2	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
zf-tcix	PF14952.6	gi|169237304|ref|YP_001690510.1|	-	0.021	14.4	1.7	2.4	7.8	0.2	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
YhfH	PF14149.6	gi|169237304|ref|YP_001690510.1|	-	0.025	14.6	0.2	3.8	7.6	0.0	2.1	2	0	0	2	2	2	0	YhfH-like	protein
Rubredoxin_2	PF18073.1	gi|169237304|ref|YP_001690510.1|	-	0.027	14.2	5.0	0.32	10.8	0.3	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-LITAF-like	PF10601.9	gi|169237304|ref|YP_001690510.1|	-	0.028	14.7	0.3	4.2	7.7	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|169237304|ref|YP_001690510.1|	-	0.036	14.0	3.4	0.52	10.3	0.4	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|169237304|ref|YP_001690510.1|	-	0.039	14.3	2.5	0.11	12.9	2.5	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Nudix_N_2	PF14803.6	gi|169237304|ref|YP_001690510.1|	-	0.051	13.5	1.7	0.2	11.6	1.7	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
DUF35_N	PF12172.8	gi|169237304|ref|YP_001690510.1|	-	0.054	13.4	4.2	3.4	7.7	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Mu-like_Com	PF10122.9	gi|169237304|ref|YP_001690510.1|	-	0.061	12.8	0.5	1.1	8.7	0.1	2.1	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_4	PF13717.6	gi|169237304|ref|YP_001690510.1|	-	0.095	12.6	0.5	9.1	6.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
VP_N-CPKC	PF11475.8	gi|169237304|ref|YP_001690510.1|	-	0.098	12.6	0.0	13	5.8	0.0	2.2	2	0	0	2	2	2	0	Virion	protein	N	terminal	domain
UPF0547	PF10571.9	gi|169237304|ref|YP_001690510.1|	-	0.15	12.2	3.0	4.1	7.6	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Terminase_GpA	PF05876.12	gi|169237304|ref|YP_001690510.1|	-	0.15	10.6	2.4	0.2	10.2	1.1	1.5	1	1	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-Mss51	PF13824.6	gi|169237304|ref|YP_001690510.1|	-	0.18	11.9	5.1	3	8.0	0.4	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1610	PF07754.11	gi|169237304|ref|YP_001690510.1|	-	0.21	11.6	3.6	9.9	6.2	0.7	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-FPG_IleRS	PF06827.14	gi|169237304|ref|YP_001690510.1|	-	0.22	11.4	7.3	0.66	9.9	0.6	2.9	2	1	1	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
CpXC	PF14353.6	gi|169237304|ref|YP_001690510.1|	-	0.26	11.3	1.2	12	6.0	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-ISL3	PF14690.6	gi|169237304|ref|YP_001690510.1|	-	0.29	11.8	3.9	1.9	9.2	0.4	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-NADH-PPase	PF09297.11	gi|169237304|ref|YP_001690510.1|	-	0.56	9.9	6.6	3.8	7.2	0.7	2.4	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.19	gi|169237305|ref|YP_001690511.1|	-	4e-05	23.6	0.8	4.2e-05	23.5	0.8	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|169237305|ref|YP_001690511.1|	-	0.00017	21.5	0.8	0.00019	21.4	0.8	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|169237305|ref|YP_001690511.1|	-	0.00019	21.0	2.4	0.00027	20.5	2.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|169237305|ref|YP_001690511.1|	-	0.0015	18.0	2.5	0.12	11.9	0.3	2.2	1	1	1	2	2	2	2	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|169237305|ref|YP_001690511.1|	-	0.003	17.2	2.7	0.2	11.4	0.1	2.2	2	0	0	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|169237305|ref|YP_001690511.1|	-	0.004	17.2	4.6	0.018	15.2	4.6	1.8	1	1	1	2	2	2	2	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|169237305|ref|YP_001690511.1|	-	0.0059	16.3	0.3	0.0066	16.1	0.3	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zinc_ribbon_15	PF17032.5	gi|169237305|ref|YP_001690511.1|	-	0.0061	17.3	0.3	0.0066	17.2	0.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
DNA_RNApol_7kD	PF03604.13	gi|169237305|ref|YP_001690511.1|	-	0.0069	16.0	5.9	0.3	10.8	6.8	2.1	1	1	1	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
UPF0547	PF10571.9	gi|169237305|ref|YP_001690511.1|	-	0.0075	16.3	2.9	0.021	14.9	3.1	1.6	1	1	1	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-FPG_IleRS	PF06827.14	gi|169237305|ref|YP_001690511.1|	-	0.0091	15.8	2.5	0.49	10.3	0.1	2.2	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
TFIIS_C	PF01096.18	gi|169237305|ref|YP_001690511.1|	-	0.011	15.6	0.9	1.6	8.7	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc-ribbons_6	PF07191.12	gi|169237305|ref|YP_001690511.1|	-	0.015	15.3	0.4	0.017	15.1	0.4	1.1	1	0	0	1	1	1	0	zinc-ribbons
zinc_ribbon_4	PF13717.6	gi|169237305|ref|YP_001690511.1|	-	0.019	14.9	1.4	1	9.3	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|169237305|ref|YP_001690511.1|	-	0.028	14.4	4.0	0.59	10.1	0.1	2.2	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|169237305|ref|YP_001690511.1|	-	0.031	14.4	0.4	0.039	14.1	0.4	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
NRDD	PF13597.6	gi|169237305|ref|YP_001690511.1|	-	0.043	12.6	0.7	0.047	12.5	0.7	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
DUF1258	PF06869.12	gi|169237305|ref|YP_001690511.1|	-	0.056	12.9	0.1	0.057	12.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
zf-ribbon_3	PF13248.6	gi|169237305|ref|YP_001690511.1|	-	0.071	12.5	4.5	0.79	9.2	0.9	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Ribosomal_L32p	PF01783.23	gi|169237305|ref|YP_001690511.1|	-	0.071	13.4	1.6	0.78	10.0	1.6	2.0	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
Lar_restr_allev	PF14354.6	gi|169237305|ref|YP_001690511.1|	-	0.093	13.1	1.9	5.9	7.3	0.3	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.17	gi|169237305|ref|YP_001690511.1|	-	0.098	12.4	2.5	0.87	9.3	0.2	2.1	1	1	1	2	2	2	0	Ribosomal	protein	S27
DUF35_N	PF12172.8	gi|169237305|ref|YP_001690511.1|	-	0.13	12.2	3.9	0.44	10.5	3.9	1.8	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
A2L_zn_ribbon	PF08792.10	gi|169237305|ref|YP_001690511.1|	-	0.2	11.4	2.0	1.2	8.9	1.9	1.9	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|169237305|ref|YP_001690511.1|	-	0.21	11.2	3.8	2.1	8.0	0.2	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|169237305|ref|YP_001690511.1|	-	0.22	11.5	3.5	0.48	10.4	3.5	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ACC	PF17848.1	gi|169237305|ref|YP_001690511.1|	-	0.31	11.1	5.8	0.93	9.6	0.3	2.1	1	1	1	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Rubredoxin_2	PF18073.1	gi|169237305|ref|YP_001690511.1|	-	1.2	8.9	6.3	14	5.6	6.3	2.1	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-ISL3	PF14690.6	gi|169237305|ref|YP_001690511.1|	-	1.5	9.6	5.5	1.1	10.0	0.5	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2H2_3	PF13878.6	gi|169237305|ref|YP_001690511.1|	-	1.7	8.5	4.9	10	6.0	0.5	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
TBP	PF00352.21	gi|169237306|ref|YP_001690512.1|	-	1.1e-52	175.9	0.0	3.4e-25	87.8	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|169237306|ref|YP_001690512.1|	-	0.00069	19.7	0.0	0.046	13.8	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
HD_3	PF13023.6	gi|169237307|ref|YP_001690513.1|	-	6.9e-33	113.9	0.2	9.3e-33	113.5	0.2	1.2	1	0	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|169237307|ref|YP_001690513.1|	-	3.8e-12	46.3	0.0	5.2e-12	45.9	0.0	1.2	1	0	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|169237307|ref|YP_001690513.1|	-	5.5e-09	36.3	0.0	1.2e-08	35.2	0.0	1.5	1	1	0	1	1	1	1	HD	domain
DUF727	PF05303.12	gi|169237307|ref|YP_001690513.1|	-	0.0079	16.2	0.3	0.013	15.6	0.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF727)
HDOD	PF08668.12	gi|169237307|ref|YP_001690513.1|	-	0.14	11.6	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	HDOD	domain
Phage_integrase	PF00589.22	gi|169237308|ref|YP_001690514.1|	-	1.2e-08	34.9	0.0	3.1e-08	33.6	0.0	1.7	1	1	0	1	1	1	1	Phage	integrase	family
Pyridox_ox_2	PF12900.7	gi|169237309|ref|YP_001690515.1|	-	8.6e-21	74.4	0.1	1e-20	74.2	0.1	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|169237309|ref|YP_001690515.1|	-	0.016	15.3	0.0	0.024	14.8	0.0	1.3	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
PDDEXK_1	PF12705.7	gi|169237310|ref|YP_001690516.1|	-	0.00085	19.3	0.0	0.65	9.9	0.0	2.1	1	1	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
XisH	PF08814.10	gi|169237310|ref|YP_001690516.1|	-	0.071	13.3	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	XisH	protein
DZR	PF12773.7	gi|169237311|ref|YP_001690517.1|	-	0.061	13.3	0.4	0.099	12.7	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|169237311|ref|YP_001690517.1|	-	0.12	12.6	1.4	0.29	11.3	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
RHH_1	PF01402.21	gi|169237312|ref|YP_001690518.1|	-	0.011	15.6	4.4	0.021	14.7	1.1	2.6	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|169237312|ref|YP_001690518.1|	-	0.059	13.3	0.0	0.15	12.0	0.0	1.7	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
DUF4250	PF14056.6	gi|169237312|ref|YP_001690518.1|	-	0.076	13.0	0.1	0.1	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halobacterium_salinarum_R1_uid61571/NC_010366.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halobacterium_salinarum_R1_uid61571/NC_010366.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halobacterium_salinarum_R1_uid61571/NC_010366.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halobacterium_salinarum_R1_uid61571/NC_010366.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:24:30 2019
# [ok]