#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF1129	PF06570.6	gi|55380075|ref|YP_137924.1|	-	0.07	12.4	0.0	0.084	12.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
DUF4589	PF15252.1	gi|55380075|ref|YP_137924.1|	-	0.15	11.8	1.3	0.18	11.6	0.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4589)
Cdc6_C	PF09079.6	gi|55380076|ref|YP_137925.1|	-	1.3e-19	69.6	0.5	3.1e-19	68.4	0.1	1.9	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55380076|ref|YP_137925.1|	-	1.2e-11	44.9	0.2	8.8e-11	42.1	0.0	2.4	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55380076|ref|YP_137925.1|	-	1.5e-10	41.3	0.3	4.4e-10	39.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|55380076|ref|YP_137925.1|	-	6.5e-07	29.2	0.1	2.6e-06	27.3	0.0	2.0	1	1	0	1	1	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|55380076|ref|YP_137925.1|	-	6e-06	26.4	0.0	1.9e-05	24.9	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|55380076|ref|YP_137925.1|	-	7e-06	25.8	0.0	1.7e-05	24.5	0.0	1.7	2	0	0	2	2	2	1	NACHT	domain
DUF815	PF05673.8	gi|55380076|ref|YP_137925.1|	-	0.0015	17.4	0.0	0.0026	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
DUF87	PF01935.12	gi|55380076|ref|YP_137925.1|	-	0.0021	17.9	0.5	0.99	9.1	0.0	3.2	3	0	0	3	3	3	1	Domain	of	unknown	function	DUF87
AAA_32	PF13654.1	gi|55380076|ref|YP_137925.1|	-	0.0033	16.1	0.0	1.1	7.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
DEAD	PF00270.24	gi|55380076|ref|YP_137925.1|	-	0.0043	16.5	0.1	2.2	7.7	0.0	2.4	1	1	0	2	2	2	1	DEAD/DEAH	box	helicase
KAP_NTPase	PF07693.9	gi|55380076|ref|YP_137925.1|	-	0.0044	16.0	1.9	0.14	11.0	0.0	2.7	2	1	1	3	3	3	1	KAP	family	P-loop	domain
T2SE	PF00437.15	gi|55380076|ref|YP_137925.1|	-	0.0049	15.8	0.0	0.012	14.4	0.0	1.6	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.1	gi|55380076|ref|YP_137925.1|	-	0.0051	17.1	0.0	0.019	15.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
ORC4_C	PF14629.1	gi|55380076|ref|YP_137925.1|	-	0.014	14.7	0.0	0.022	14.1	0.0	1.3	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	4	C-terminus
Sigma54_activat	PF00158.21	gi|55380076|ref|YP_137925.1|	-	0.016	14.6	0.0	0.027	13.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|55380076|ref|YP_137925.1|	-	0.017	15.3	0.0	0.043	13.9	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.17	gi|55380076|ref|YP_137925.1|	-	0.017	14.0	0.0	0.03	13.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.1	gi|55380076|ref|YP_137925.1|	-	0.017	15.9	0.0	0.047	14.5	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_2	PF07724.9	gi|55380076|ref|YP_137925.1|	-	0.027	14.3	0.0	0.069	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|55380076|ref|YP_137925.1|	-	0.028	13.4	0.0	0.39	9.7	0.0	2.4	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|55380076|ref|YP_137925.1|	-	0.072	12.8	0.0	16	5.1	0.0	2.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|55380076|ref|YP_137925.1|	-	0.074	12.4	2.0	0.36	10.2	1.0	2.3	1	1	0	1	1	1	0	AAA-like	domain
AAA_24	PF13479.1	gi|55380076|ref|YP_137925.1|	-	0.082	12.4	1.1	0.45	10.0	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|55380076|ref|YP_137925.1|	-	0.095	11.8	0.0	0.2	10.8	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
PIF1	PF05970.9	gi|55380076|ref|YP_137925.1|	-	0.098	11.5	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
MMR_HSR1	PF01926.18	gi|55380076|ref|YP_137925.1|	-	0.11	12.4	0.1	0.4	10.6	0.1	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Flagellin_N	PF00669.15	gi|55380076|ref|YP_137925.1|	-	0.13	12.0	1.7	0.61	9.8	0.4	2.5	3	0	0	3	3	3	0	Bacterial	flagellin	N-terminal	helical	region
FmdA_AmdA	PF03069.10	gi|55380078|ref|YP_137927.1|	-	7.1e-43	146.6	6.0	1.9e-22	79.4	0.4	2.1	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
F420_ligase	PF01996.11	gi|55380078|ref|YP_137927.1|	-	0.053	12.5	0.5	1.7	7.6	0.0	2.2	2	0	0	2	2	2	0	F420-0:Gamma-glutamyl	ligase
TRAM	PF01938.15	gi|55380078|ref|YP_137927.1|	-	0.49	10.2	3.1	1.8	8.4	0.2	2.8	3	0	0	3	3	3	0	TRAM	domain
SdpI	PF13630.1	gi|55380079|ref|YP_137928.1|	-	1.4	8.6	6.2	1.8	8.3	4.3	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
DDE_Tnp_1	PF01609.16	gi|55380080|ref|YP_137929.1|	-	1.1e-21	77.4	0.0	1.5e-21	76.9	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55380080|ref|YP_137929.1|	-	0.0035	17.3	0.1	0.0061	16.5	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF217	PF02697.9	gi|55380083|ref|YP_137932.1|	-	8.4e-07	29.1	0.5	1.1e-06	28.8	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
HTH_20	PF12840.2	gi|55380085|ref|YP_137934.1|	-	7.3e-08	32.1	0.3	1.1e-07	31.5	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|55380085|ref|YP_137934.1|	-	7.9e-06	25.3	0.2	1.2e-05	24.7	0.2	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380085|ref|YP_137934.1|	-	9.3e-06	24.9	0.0	1.4e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|55380085|ref|YP_137934.1|	-	2e-05	24.1	0.1	3.4e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|55380085|ref|YP_137934.1|	-	4.7e-05	22.9	0.1	9.2e-05	22.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|55380085|ref|YP_137934.1|	-	0.00022	20.6	0.2	0.00054	19.4	0.1	1.7	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|55380085|ref|YP_137934.1|	-	0.00065	19.3	0.0	0.00092	18.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|55380085|ref|YP_137934.1|	-	0.00075	19.1	0.0	0.0011	18.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|55380085|ref|YP_137934.1|	-	0.0049	16.7	0.0	0.008	16.0	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_7	PF02796.10	gi|55380085|ref|YP_137934.1|	-	0.007	16.2	0.0	0.061	13.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
DUF1492	PF07374.6	gi|55380085|ref|YP_137934.1|	-	0.01	15.9	0.0	0.016	15.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
TetR_N	PF00440.18	gi|55380085|ref|YP_137934.1|	-	0.01	15.4	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
MarR	PF01047.17	gi|55380085|ref|YP_137934.1|	-	0.013	15.2	0.0	0.021	14.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.1	gi|55380085|ref|YP_137934.1|	-	0.015	15.6	0.2	0.045	14.0	0.0	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
ArsR	PF09824.4	gi|55380085|ref|YP_137934.1|	-	0.028	13.7	0.0	0.034	13.4	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
Rrf2	PF02082.15	gi|55380085|ref|YP_137934.1|	-	0.032	14.3	0.0	0.05	13.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_29	PF13551.1	gi|55380085|ref|YP_137934.1|	-	0.055	13.6	0.1	0.17	12.0	0.0	1.8	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_38	PF13936.1	gi|55380085|ref|YP_137934.1|	-	0.061	12.8	0.1	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|55380085|ref|YP_137934.1|	-	0.07	12.8	0.0	0.18	11.4	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
PadR	PF03551.9	gi|55380085|ref|YP_137934.1|	-	0.084	12.6	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
UNC-50	PF05216.8	gi|55380086|ref|YP_137935.1|	-	0.027	13.6	0.3	0.041	13.0	0.2	1.4	1	1	0	1	1	1	0	UNC-50	family
DUF973	PF06157.6	gi|55380086|ref|YP_137935.1|	-	0.067	12.1	0.8	0.074	12.0	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
SpoIIAA-like	PF11964.3	gi|55380087|ref|YP_137936.1|	-	0.063	13.5	0.1	0.085	13.1	0.1	1.2	1	0	0	1	1	1	0	SpoIIAA-like
FAM195	PF14799.1	gi|55380087|ref|YP_137936.1|	-	0.091	12.6	3.4	0.25	11.2	0.5	2.0	1	1	0	2	2	2	0	FAM195	family
DUF1487	PF07368.6	gi|55380087|ref|YP_137936.1|	-	0.1	11.7	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1487)
Arch_flagellin	PF01917.11	gi|55380089|ref|YP_137938.1|	-	3.5e-21	75.6	3.4	3.8e-21	75.5	2.4	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
RskA	PF10099.4	gi|55380089|ref|YP_137938.1|	-	0.13	11.9	1.3	0.15	11.8	0.9	1.0	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
DUF1206	PF06724.6	gi|55380092|ref|YP_137941.1|	-	1.4	8.7	6.8	10	5.9	0.3	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1206)
DUF2892	PF11127.3	gi|55380092|ref|YP_137941.1|	-	2.1	8.2	8.0	0.32	10.8	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
NfeD	PF01957.13	gi|55380092|ref|YP_137941.1|	-	2.9	8.0	4.9	6.4	6.9	0.5	2.2	2	0	0	2	2	2	0	NfeD-like	C-terminal,	partner-binding
DUF350	PF03994.9	gi|55380094|ref|YP_137943.1|	-	0.099	12.3	5.2	0.33	10.7	2.7	2.3	2	1	0	2	2	2	0	Domain	of	Unknown	Function	(DUF350)
Acetyltransf_1	PF00583.19	gi|55380098|ref|YP_137947.1|	-	1.1e-11	44.5	0.3	2.6e-11	43.3	0.2	1.6	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|55380098|ref|YP_137947.1|	-	1.3e-10	41.4	0.0	1.7e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|55380098|ref|YP_137947.1|	-	9.8e-10	38.7	0.0	1.2e-09	38.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|55380098|ref|YP_137947.1|	-	1.7e-09	37.7	0.1	2.8e-09	36.9	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|55380098|ref|YP_137947.1|	-	3.6e-05	23.6	0.0	0.00037	20.3	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|55380098|ref|YP_137947.1|	-	0.0018	18.2	0.0	0.0025	17.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|55380098|ref|YP_137947.1|	-	0.017	15.0	0.0	0.048	13.5	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|55380098|ref|YP_137947.1|	-	0.021	14.6	0.0	0.036	13.9	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.1	gi|55380098|ref|YP_137947.1|	-	0.024	14.5	0.0	0.034	14.1	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DDE_Tnp_1	PF01609.16	gi|55380099|ref|YP_137948.1|	-	1.1e-21	77.4	0.0	1.5e-21	76.9	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55380099|ref|YP_137948.1|	-	0.0035	17.3	0.1	0.0061	16.5	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Metallophos_2	PF12850.2	gi|55380100|ref|YP_137949.1|	-	3.7e-28	98.3	0.0	4.8e-28	97.9	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|55380100|ref|YP_137949.1|	-	2.9e-05	23.5	0.8	7.9e-05	22.1	0.5	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
SHOCT	PF09851.4	gi|55380102|ref|YP_137951.1|	-	3.6e-11	42.1	1.4	4.8e-11	41.7	0.9	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.7	gi|55380102|ref|YP_137951.1|	-	0.00097	18.8	0.0	0.0014	18.3	0.0	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.6	gi|55380102|ref|YP_137951.1|	-	0.0028	17.3	0.7	0.0043	16.7	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
ABC2_membrane_2	PF12679.2	gi|55380102|ref|YP_137951.1|	-	0.12	11.2	0.1	0.13	11.1	0.0	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Tautomerase	PF01361.16	gi|55380103|ref|YP_137952.1|	-	8e-09	34.9	0.0	0.00027	20.4	0.0	2.2	2	0	0	2	2	2	2	Tautomerase	enzyme
Tautomerase_2	PF14552.1	gi|55380103|ref|YP_137952.1|	-	2.3e-05	24.2	0.0	0.0064	16.4	0.0	2.1	1	1	1	2	2	2	2	Tautomerase	enzyme
Tautomerase_3	PF14832.1	gi|55380103|ref|YP_137952.1|	-	0.025	14.5	0.0	0.038	13.9	0.0	1.5	1	1	0	1	1	1	0	Putative	oxalocrotonate	tautomerase	enzyme
HTH_31	PF13560.1	gi|55380104|ref|YP_137953.1|	-	0.0042	17.2	0.3	0.0053	16.9	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|55380104|ref|YP_137953.1|	-	0.078	12.8	0.0	0.13	12.1	0.0	1.5	1	1	1	2	2	2	0	Helix-turn-helix
Na_sulph_symp	PF00939.14	gi|55380105|ref|YP_137954.1|	-	1.4e-73	248.3	36.2	1.8e-73	248.0	25.1	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.11	gi|55380105|ref|YP_137954.1|	-	1.6e-17	63.1	27.2	4.7e-10	38.5	0.3	3.4	2	2	1	3	3	3	3	Citrate	transporter
MFS_1	PF07690.11	gi|55380106|ref|YP_137955.1|	-	0.036	12.7	2.8	0.04	12.6	1.9	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF4203	PF13886.1	gi|55380106|ref|YP_137955.1|	-	0.079	12.4	3.8	0.078	12.4	2.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4203)
Sulfate_tra_GLY	PF13792.1	gi|55380106|ref|YP_137955.1|	-	0.44	10.2	3.5	0.55	9.9	2.4	1.2	1	1	0	1	1	1	0	Sulfate	transporter	N-terminal	domain	with	GLY	motif
Usp	PF00582.21	gi|55380107|ref|YP_137956.1|	-	4.1e-13	49.7	0.1	5.1e-13	49.4	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
TAT_signal	PF10518.4	gi|55380108|ref|YP_137957.1|	-	0.42	10.7	1.9	0.87	9.7	1.3	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Exonuc_VII_L	PF02601.10	gi|55380109|ref|YP_137958.1|	-	1.8e-63	214.6	0.8	2.6e-63	214.1	0.5	1.2	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.1	gi|55380109|ref|YP_137958.1|	-	6e-20	70.9	0.1	1.2e-19	69.9	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
ResB	PF05140.9	gi|55380109|ref|YP_137958.1|	-	0.004	15.7	0.2	0.0064	15.1	0.1	1.3	1	0	0	1	1	1	1	ResB-like	family
tRNA_anti-codon	PF01336.20	gi|55380109|ref|YP_137958.1|	-	0.01	15.6	0.2	0.018	14.9	0.1	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
DUF2077	PF09850.4	gi|55380109|ref|YP_137958.1|	-	0.011	15.1	2.3	0.016	14.6	0.6	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
DUF2721	PF11026.3	gi|55380109|ref|YP_137958.1|	-	0.019	14.6	1.8	0.019	14.6	1.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
PBP1_TM	PF14812.1	gi|55380109|ref|YP_137958.1|	-	0.044	14.0	0.5	0.081	13.2	0.3	1.5	1	0	0	1	1	1	0	Transmembrane	domain	of	transglycosylase	PBP1	at	N-terminal
AAA_13	PF13166.1	gi|55380109|ref|YP_137958.1|	-	0.061	11.7	0.0	0.13	10.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
T2SF	PF00482.18	gi|55380109|ref|YP_137958.1|	-	0.062	13.2	1.5	0.14	12.1	0.1	2.2	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
SSB	PF00436.20	gi|55380109|ref|YP_137958.1|	-	0.092	12.6	0.0	0.24	11.3	0.0	1.6	1	0	0	1	1	1	0	Single-strand	binding	protein	family
YolD	PF08863.5	gi|55380109|ref|YP_137958.1|	-	0.12	12.2	0.3	13	5.7	0.0	3.3	3	0	0	3	3	3	0	YolD-like	protein
DUF3357	PF11837.3	gi|55380109|ref|YP_137958.1|	-	0.14	12.0	0.2	0.25	11.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
Prominin	PF05478.6	gi|55380109|ref|YP_137958.1|	-	0.16	9.4	0.1	0.21	9.0	0.1	1.1	1	0	0	1	1	1	0	Prominin
Atg14	PF10186.4	gi|55380109|ref|YP_137958.1|	-	3.6	6.4	6.2	6.2	5.6	4.3	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Exonuc_VII_S	PF02609.11	gi|55380110|ref|YP_137959.1|	-	1.4e-10	40.7	1.7	1.5e-10	40.7	1.2	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
DUF3251	PF11622.3	gi|55380110|ref|YP_137959.1|	-	0.11	11.9	0.1	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3251)
UBN2_2	PF14227.1	gi|55380110|ref|YP_137959.1|	-	0.13	11.8	0.2	0.16	11.5	0.1	1.3	1	1	0	1	1	1	0	gag-polypeptide	of	LTR	copia-type
Rnk_N	PF14760.1	gi|55380110|ref|YP_137959.1|	-	0.48	10.5	6.2	13	5.9	4.3	2.2	1	1	0	1	1	1	0	Rnk	N-terminus
Cep57_CLD_2	PF14197.1	gi|55380110|ref|YP_137959.1|	-	0.56	10.1	3.7	0.52	10.2	0.5	1.8	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
KRTDAP	PF15200.1	gi|55380113|ref|YP_137962.1|	-	0.024	14.3	0.0	0.037	13.7	0.0	1.2	1	0	0	1	1	1	0	Keratinocyte	differentiation-associated
Phage_integrase	PF00589.17	gi|55380114|ref|YP_137963.1|	-	8.2e-14	51.6	0.0	3.4e-13	49.6	0.0	2.0	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|55380114|ref|YP_137963.1|	-	1.9e-06	27.8	0.1	6.4e-06	26.2	0.1	1.9	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|55380114|ref|YP_137963.1|	-	0.0011	19.2	0.0	0.0024	18.1	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.3	gi|55380114|ref|YP_137963.1|	-	0.066	11.9	0.0	0.25	9.9	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
DUF1510	PF07423.6	gi|55380115|ref|YP_137964.1|	-	0.007	15.7	3.4	0.0074	15.6	2.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1510)
SpoIIIAH	PF12685.2	gi|55380115|ref|YP_137964.1|	-	0.03	13.8	1.4	0.036	13.5	1.0	1.2	1	0	0	1	1	1	0	SpoIIIAH-like	protein
ANAPC15	PF15243.1	gi|55380115|ref|YP_137964.1|	-	2.9	8.0	16.9	2.6	8.1	11.3	1.3	1	1	0	1	1	1	0	Anaphase-promoting	complex	subunit	15
Nucleoplasmin	PF03066.10	gi|55380115|ref|YP_137964.1|	-	3.6	7.0	12.8	4	6.9	8.9	1.3	1	0	0	1	1	1	0	Nucleoplasmin
Pox_Ag35	PF03286.9	gi|55380115|ref|YP_137964.1|	-	9.6	5.6	8.6	11	5.4	5.9	1.1	1	0	0	1	1	1	0	Pox	virus	Ag35	surface	protein
ApbE	PF02424.10	gi|55380116|ref|YP_137965.1|	-	4.3e-30	104.8	0.0	6.8e-30	104.1	0.0	1.3	1	1	0	1	1	1	1	ApbE	family
TSP_3	PF02412.13	gi|55380117|ref|YP_137966.1|	-	1.6e-05	24.3	1.0	1.6e-05	24.3	0.7	2.4	3	0	0	3	3	3	1	Thrombospondin	type	3	repeat
Ferric_reduct	PF01794.14	gi|55380118|ref|YP_137967.1|	-	0.008	16.2	5.6	0.008	16.2	3.9	2.1	1	1	1	2	2	2	1	Ferric	reductase	like	transmembrane	component
DUF4405	PF14358.1	gi|55380118|ref|YP_137967.1|	-	0.056	13.5	1.4	0.056	13.5	1.0	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
Keratin_assoc	PF09775.4	gi|55380118|ref|YP_137967.1|	-	0.072	12.6	0.7	0.38	10.3	0.0	2.0	2	0	0	2	2	2	0	Keratinocyte-associated	protein	2
PepSY_TM_2	PF13703.1	gi|55380118|ref|YP_137967.1|	-	0.14	12.3	0.5	0.14	12.3	0.3	3.0	2	1	1	3	3	3	0	PepSY-associated	TM	helix
PepSY_TM_1	PF13172.1	gi|55380118|ref|YP_137967.1|	-	4.2	7.2	7.7	4	7.3	0.1	3.4	3	0	0	3	3	3	0	PepSY-associated	TM	helix
HTH_20	PF12840.2	gi|55380119|ref|YP_137968.1|	-	4e-21	74.5	1.4	2.5e-13	49.6	0.6	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55380119|ref|YP_137968.1|	-	9.6e-16	57.1	0.0	2.9e-10	39.6	0.1	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|55380119|ref|YP_137968.1|	-	6.2e-14	51.1	0.1	3.9e-08	32.5	0.0	2.5	2	1	1	3	3	3	2	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|55380119|ref|YP_137968.1|	-	4.6e-11	42.2	0.0	1.1e-06	28.2	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|55380119|ref|YP_137968.1|	-	1.1e-10	41.6	0.1	2.7e-05	24.2	0.0	2.3	1	1	1	2	2	2	2	Penicillinase	repressor
MarR_2	PF12802.2	gi|55380119|ref|YP_137968.1|	-	2.9e-09	36.4	0.7	9.5e-06	25.2	0.2	2.5	2	1	0	2	2	2	2	MarR	family
HTH_27	PF13463.1	gi|55380119|ref|YP_137968.1|	-	1e-08	35.3	0.9	5.6e-06	26.5	0.3	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|55380119|ref|YP_137968.1|	-	8.1e-07	28.6	0.1	0.001	18.7	0.1	2.2	2	0	0	2	2	2	2	MarR	family
HTH_34	PF13601.1	gi|55380119|ref|YP_137968.1|	-	5.6e-06	26.2	0.0	0.034	14.1	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.1	gi|55380119|ref|YP_137968.1|	-	6.5e-06	26.1	0.1	0.15	12.1	0.0	2.2	2	0	0	2	2	2	2	Mrr	N-terminal	domain
RP-C	PF03428.8	gi|55380119|ref|YP_137968.1|	-	8.8e-06	25.2	0.1	0.083	12.3	0.0	2.3	1	1	1	2	2	2	2	Replication	protein	C	N-terminal	domain
Fe_dep_repress	PF01325.14	gi|55380119|ref|YP_137968.1|	-	1.1e-05	25.2	0.0	0.00012	21.9	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|55380119|ref|YP_137968.1|	-	2.9e-05	23.5	0.5	0.00035	20.0	0.1	2.6	1	1	1	2	2	2	1	AsnC-type	helix-turn-helix	domain
DUF2513	PF10711.4	gi|55380119|ref|YP_137968.1|	-	6.8e-05	22.8	0.0	0.17	11.9	0.0	2.2	2	0	0	2	2	2	2	Hypothetical	protein	(DUF2513)
HTH_DeoR	PF08220.7	gi|55380119|ref|YP_137968.1|	-	0.00033	20.1	0.1	0.007	15.8	0.0	2.3	2	1	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|55380119|ref|YP_137968.1|	-	0.0011	18.5	0.4	0.0024	17.4	0.3	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|55380119|ref|YP_137968.1|	-	0.0067	16.5	0.0	0.034	14.2	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_Crp_2	PF13545.1	gi|55380119|ref|YP_137968.1|	-	0.0075	16.0	0.0	0.18	11.5	0.0	2.4	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|55380119|ref|YP_137968.1|	-	0.014	15.0	0.0	3.8	7.0	0.0	2.3	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
PaaX	PF07848.7	gi|55380119|ref|YP_137968.1|	-	0.015	15.2	0.1	0.29	11.1	0.0	2.2	2	0	0	2	2	2	0	PaaX-like	protein
HTH_11	PF08279.7	gi|55380119|ref|YP_137968.1|	-	0.075	12.6	0.7	0.33	10.6	0.1	2.1	2	0	0	2	2	2	0	HTH	domain
HTH_38	PF13936.1	gi|55380119|ref|YP_137968.1|	-	0.084	12.4	0.1	1.1	8.8	0.0	2.5	2	1	1	3	3	3	0	Helix-turn-helix	domain
MerR_1	PF13411.1	gi|55380119|ref|YP_137968.1|	-	0.11	12.2	1.0	2.3	8.0	0.1	2.5	2	1	0	2	2	2	0	MerR	HTH	family	regulatory	protein
HTH_41	PF14502.1	gi|55380119|ref|YP_137968.1|	-	0.16	11.6	0.0	6.9	6.3	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
7TMR-DISM_7TM	PF07695.6	gi|55380120|ref|YP_137969.1|	-	0.0012	18.5	4.7	0.0014	18.2	3.3	1.1	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
DUF998	PF06197.8	gi|55380120|ref|YP_137969.1|	-	0.013	14.7	3.5	0.02	14.1	2.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
DUF981	PF06168.6	gi|55380120|ref|YP_137969.1|	-	0.051	13.3	5.7	0.077	12.7	4.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DUF1275	PF06912.6	gi|55380120|ref|YP_137969.1|	-	0.18	11.0	2.8	0.23	10.6	1.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
DUF4131	PF13567.1	gi|55380120|ref|YP_137969.1|	-	0.44	9.9	10.4	0.019	14.3	2.4	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
MadM	PF03818.8	gi|55380120|ref|YP_137969.1|	-	0.78	9.3	3.3	0.47	10.0	0.6	1.8	2	1	0	2	2	2	0	Malonate/sodium	symporter	MadM	subunit
DUF308	PF03729.8	gi|55380120|ref|YP_137969.1|	-	0.95	9.5	7.7	0.83	9.6	1.6	2.1	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
DDE_Tnp_1	PF01609.16	gi|55380121|ref|YP_137970.1|	-	2.7e-08	33.6	1.7	3.3e-08	33.3	1.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|55380121|ref|YP_137970.1|	-	0.27	11.4	2.6	0.3	11.2	0.1	2.1	2	1	0	2	2	2	0	Transposase	DDE	domain
DUF3368	PF11848.3	gi|55380122|ref|YP_137971.1|	-	1.1e-05	24.9	0.2	2.6e-05	23.6	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3368)
PIN	PF01850.16	gi|55380122|ref|YP_137971.1|	-	0.0022	18.2	0.7	0.008	16.5	0.1	1.9	2	0	0	2	2	2	1	PIN	domain
UPF0175	PF03683.8	gi|55380123|ref|YP_137972.1|	-	3.8e-17	61.5	2.1	5.3e-17	61.0	1.5	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_2	PF03693.9	gi|55380123|ref|YP_137972.1|	-	0.11	12.6	0.1	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0156)
Pox_Ag35	PF03286.9	gi|55380126|ref|YP_137975.1|	-	0.11	12.0	3.9	0.14	11.6	2.7	1.2	1	0	0	1	1	1	0	Pox	virus	Ag35	surface	protein
Nop14	PF04147.7	gi|55380126|ref|YP_137975.1|	-	3.2	5.5	10.1	3.3	5.5	7.0	1.1	1	0	0	1	1	1	0	Nop14-like	family
Daxx	PF03344.10	gi|55380126|ref|YP_137975.1|	-	7.5	4.9	10.8	7.1	4.9	7.5	1.1	1	0	0	1	1	1	0	Daxx	Family
CbiA	PF01656.18	gi|55380127|ref|YP_137976.1|	-	2.7e-25	88.9	0.1	3.7e-25	88.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55380127|ref|YP_137976.1|	-	8.5e-09	35.5	0.0	1.1e-07	31.9	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|55380127|ref|YP_137976.1|	-	1.1e-07	31.1	0.0	0.00032	19.8	0.1	2.7	3	0	0	3	3	3	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|55380127|ref|YP_137976.1|	-	6.7e-05	22.0	0.0	0.00064	18.8	0.0	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|55380127|ref|YP_137976.1|	-	7.7e-05	22.1	0.0	0.00011	21.6	0.0	1.1	1	0	0	1	1	1	1	YhjQ	protein
AAA_17	PF13207.1	gi|55380127|ref|YP_137976.1|	-	0.0016	19.2	0.5	0.0045	17.7	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
VirC1	PF07015.6	gi|55380127|ref|YP_137976.1|	-	0.0029	16.7	0.0	0.8	8.7	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
Fer4_NifH	PF00142.13	gi|55380127|ref|YP_137976.1|	-	0.0034	16.5	0.0	0.17	11.0	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_10	PF12846.2	gi|55380127|ref|YP_137976.1|	-	0.011	15.1	0.1	0.044	13.2	0.0	1.9	2	1	0	2	2	2	0	AAA-like	domain
SRP54	PF00448.17	gi|55380127|ref|YP_137976.1|	-	0.025	13.9	0.2	3.9	6.8	0.0	2.6	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
APS_kinase	PF01583.15	gi|55380127|ref|YP_137976.1|	-	0.043	13.4	0.1	0.09	12.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_25	PF13481.1	gi|55380127|ref|YP_137976.1|	-	0.045	13.1	0.3	0.14	11.5	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|55380127|ref|YP_137976.1|	-	0.073	13.3	0.2	0.23	11.7	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Cdc6_C	PF09079.6	gi|55380128|ref|YP_137977.1|	-	1.8e-17	62.8	0.1	3.3e-17	61.9	0.1	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55380128|ref|YP_137977.1|	-	2.9e-11	43.7	0.1	1.1e-09	38.5	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55380128|ref|YP_137977.1|	-	4.3e-10	39.8	0.0	1.2e-09	38.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|55380128|ref|YP_137977.1|	-	2.5e-09	37.4	0.0	8.8e-09	35.6	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|55380128|ref|YP_137977.1|	-	0.00071	19.3	0.0	0.002	17.8	0.0	1.7	1	1	0	1	1	1	1	Archaeal	ATPase
DUF815	PF05673.8	gi|55380128|ref|YP_137977.1|	-	0.0015	17.4	0.0	0.0026	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|55380128|ref|YP_137977.1|	-	0.0032	17.1	0.0	0.0066	16.1	0.0	1.5	2	0	0	2	2	2	1	NACHT	domain
T2SE	PF00437.15	gi|55380128|ref|YP_137977.1|	-	0.021	13.7	0.0	0.04	12.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DEAD	PF00270.24	gi|55380128|ref|YP_137977.1|	-	0.023	14.1	0.2	0.62	9.5	0.0	2.4	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
Sigma54_activat	PF00158.21	gi|55380128|ref|YP_137977.1|	-	0.034	13.6	0.0	0.08	12.4	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
PaaX	PF07848.7	gi|55380128|ref|YP_137977.1|	-	0.037	14.0	0.0	0.095	12.7	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
AAA_10	PF12846.2	gi|55380128|ref|YP_137977.1|	-	0.055	12.9	0.1	1.3	8.4	0.0	2.6	3	0	0	3	3	3	0	AAA-like	domain
AAA_17	PF13207.1	gi|55380128|ref|YP_137977.1|	-	0.15	12.8	0.8	3.5	8.4	0.5	3.0	1	1	0	1	1	1	0	AAA	domain
Pentapeptide_3	PF13576.1	gi|55380131|ref|YP_137980.1|	-	1.7e-42	143.0	91.4	2.8e-09	36.7	2.7	9.9	8	3	3	11	11	11	8	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.11	gi|55380131|ref|YP_137980.1|	-	2.7e-06	27.0	8.2	3.9e-06	26.4	3.3	2.3	1	1	1	2	2	2	1	Ion	channel
Pentapeptide_4	PF13599.1	gi|55380131|ref|YP_137980.1|	-	0.0094	15.7	43.5	1.7	8.5	7.2	7.4	4	2	1	5	5	5	2	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.17	gi|55380131|ref|YP_137980.1|	-	0.064	12.5	14.4	3.3	7.0	0.2	7.3	7	0	0	7	7	7	0	Pentapeptide	repeats	(8	copies)
DUF3060	PF11259.3	gi|55380132|ref|YP_137981.1|	-	0.094	12.3	8.3	0.46	10.1	3.4	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3060)
DUF2617	PF10936.3	gi|55380133|ref|YP_137982.1|	-	1.8e-06	27.6	2.1	0.00016	21.2	1.5	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF2617
Spermine_synth	PF01564.12	gi|55380134|ref|YP_137983.1|	-	2e-17	62.9	0.0	2.8e-17	62.4	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Cytochrom_B558a	PF05038.8	gi|55380134|ref|YP_137983.1|	-	0.015	14.9	1.0	2.9	7.4	0.1	2.4	2	0	0	2	2	2	0	Cytochrome	Cytochrome	b558	alpha-subunit
Methyltransf_30	PF05430.6	gi|55380134|ref|YP_137983.1|	-	0.041	13.5	0.0	0.078	12.6	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
Abi	PF02517.11	gi|55380135|ref|YP_137984.1|	-	1.5e-13	50.7	5.6	1.5e-13	50.7	3.9	2.8	3	1	0	3	3	3	1	CAAX	protease	self-immunity
DUF2105	PF09878.4	gi|55380135|ref|YP_137984.1|	-	2.4	7.6	11.2	0.19	11.2	0.5	2.6	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2105)
COX15-CtaA	PF02628.10	gi|55380137|ref|YP_137985.1|	-	0.086	11.6	0.7	0.1	11.4	0.5	1.1	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
MerC	PF03203.9	gi|55380137|ref|YP_137985.1|	-	0.16	12.3	0.9	0.22	11.8	0.4	1.5	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
DUF1129	PF06570.6	gi|55380137|ref|YP_137985.1|	-	0.22	10.8	1.1	0.27	10.5	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Glyco_transf_21	PF13506.1	gi|55380136|ref|YP_137986.1|	-	5.5e-12	45.3	0.0	9.7e-12	44.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.21	gi|55380136|ref|YP_137986.1|	-	4.2e-06	26.5	0.0	8.6e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|55380136|ref|YP_137986.1|	-	0.0024	17.7	0.2	0.0065	16.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
HTH_20	PF12840.2	gi|55380138|ref|YP_137987.1|	-	8.9e-07	28.6	0.1	1.7e-06	27.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|55380138|ref|YP_137987.1|	-	4.7e-06	26.2	0.1	8.4e-06	25.4	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.1	gi|55380138|ref|YP_137987.1|	-	5.2e-06	25.9	0.2	1.4e-05	24.5	0.2	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|55380138|ref|YP_137987.1|	-	9.2e-05	22.0	0.0	0.00028	20.4	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
PadR	PF03551.9	gi|55380138|ref|YP_137987.1|	-	0.00016	21.3	0.1	0.00027	20.6	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|55380138|ref|YP_137987.1|	-	0.00022	20.8	0.0	0.001	18.6	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_ISL3	PF13542.1	gi|55380138|ref|YP_137987.1|	-	0.00093	18.3	0.0	0.0018	17.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_IclR	PF09339.5	gi|55380138|ref|YP_137987.1|	-	0.0076	15.8	0.0	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|55380138|ref|YP_137987.1|	-	0.013	15.1	0.0	0.027	14.1	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_27	PF13463.1	gi|55380138|ref|YP_137987.1|	-	0.023	15.0	0.0	0.043	14.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|55380138|ref|YP_137987.1|	-	0.024	14.0	0.0	0.042	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|55380138|ref|YP_137987.1|	-	0.026	14.1	0.2	0.099	12.3	0.0	1.9	2	0	0	2	2	2	0	MarR	family
DUF2513	PF10711.4	gi|55380138|ref|YP_137987.1|	-	0.052	13.6	0.0	0.085	12.9	0.0	1.4	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
DUF4396	PF14342.1	gi|55380139|ref|YP_137988.1|	-	0.056	13.5	1.2	0.061	13.4	0.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4396)
UPF0547	PF10571.4	gi|55380140|ref|YP_137989.1|	-	0.00056	19.5	0.5	0.0036	16.9	0.3	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
A2L_zn_ribbon	PF08792.5	gi|55380140|ref|YP_137989.1|	-	0.011	15.1	2.2	0.23	10.9	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Methyltransf_13	PF08421.6	gi|55380140|ref|YP_137989.1|	-	0.016	14.7	0.4	0.053	13.0	0.0	1.8	2	0	0	2	2	2	0	Putative	zinc	binding	domain
zf-ribbon_3	PF13248.1	gi|55380140|ref|YP_137989.1|	-	0.018	14.2	0.5	0.4	9.9	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|55380140|ref|YP_137989.1|	-	0.021	14.9	0.4	0.021	14.9	0.3	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
Rubredoxin	PF00301.15	gi|55380140|ref|YP_137989.1|	-	0.037	13.9	0.4	6.8	6.6	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
Auto_anti-p27	PF06677.7	gi|55380140|ref|YP_137989.1|	-	0.053	13.2	0.4	5	6.9	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TF_Zn_Ribbon	PF08271.7	gi|55380140|ref|YP_137989.1|	-	0.061	12.6	0.7	4	6.8	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|55380140|ref|YP_137989.1|	-	0.1	12.1	0.5	3.5	7.1	0.0	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DZR	PF12773.2	gi|55380140|ref|YP_137989.1|	-	0.12	12.1	0.6	0.57	10.0	0.4	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
C1_3	PF07649.7	gi|55380140|ref|YP_137989.1|	-	0.17	11.9	2.2	6.4	6.8	0.0	2.2	2	0	0	2	2	2	0	C1-like	domain
zf-TFIIB	PF13453.1	gi|55380140|ref|YP_137989.1|	-	0.24	10.6	1.1	1.2	8.3	0.8	2.0	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-RING_3	PF14369.1	gi|55380140|ref|YP_137989.1|	-	0.37	10.8	1.9	12	6.0	0.0	2.2	2	0	0	2	2	2	0	zinc-finger
UL11	PF11094.3	gi|55380141|ref|YP_137990.1|	-	0.065	13.0	1.6	0.17	11.7	1.1	1.7	1	1	0	1	1	1	0	Membrane-associated	tegument	protein
zf-ribbon_3	PF13248.1	gi|55380143|ref|YP_137992.1|	-	0.00024	20.2	7.6	0.018	14.2	0.6	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
HypA	PF01155.14	gi|55380143|ref|YP_137992.1|	-	0.0016	18.1	3.7	0.24	11.1	0.1	2.3	2	0	0	2	2	2	2	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|55380143|ref|YP_137992.1|	-	0.0024	17.6	11.6	0.0094	15.7	0.9	2.9	2	1	0	2	2	2	2	Double	zinc	ribbon
DUF4596	PF15363.1	gi|55380143|ref|YP_137992.1|	-	0.0082	16.0	0.1	0.024	14.5	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4596)
zinc_ribbon_2	PF13240.1	gi|55380143|ref|YP_137992.1|	-	0.24	10.9	14.2	0.17	11.3	1.3	3.5	3	0	0	3	3	3	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|55380143|ref|YP_137992.1|	-	0.29	10.8	5.3	18	5.1	0.4	3.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Baculo_LEF5_C	PF11792.3	gi|55380143|ref|YP_137992.1|	-	0.4	10.1	5.3	0.4	10.0	0.0	3.0	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
DUF3368	PF11848.3	gi|55380144|ref|YP_137993.1|	-	4.9e-14	51.6	0.0	7.9e-14	50.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3368)
UPF0175	PF03683.8	gi|55380145|ref|YP_137994.1|	-	1.8e-26	91.4	1.2	1.9e-26	91.2	0.8	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
Sensor	PF13796.1	gi|55380146|ref|YP_137995.1|	-	9.2e-36	123.1	28.1	5.3e-35	120.6	19.5	1.9	1	1	0	1	1	1	1	Putative	sensor
ALF	PF03752.8	gi|55380146|ref|YP_137995.1|	-	0.079	12.8	0.1	0.17	11.8	0.1	1.6	1	0	0	1	1	1	0	Short	repeats	of	unknown	function
HTH_20	PF12840.2	gi|55380147|ref|YP_137996.1|	-	0.00084	19.0	0.3	0.0012	18.5	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|55380147|ref|YP_137996.1|	-	0.0057	15.8	0.5	0.012	14.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR_2	PF12802.2	gi|55380147|ref|YP_137996.1|	-	0.013	15.1	0.0	0.018	14.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.14	gi|55380147|ref|YP_137996.1|	-	0.016	14.8	0.0	0.022	14.4	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.9	gi|55380147|ref|YP_137996.1|	-	0.018	14.8	0.0	0.025	14.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_Crp_2	PF13545.1	gi|55380147|ref|YP_137996.1|	-	0.037	13.8	0.0	0.057	13.2	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|55380147|ref|YP_137996.1|	-	0.054	13.0	0.0	0.088	12.4	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|55380147|ref|YP_137996.1|	-	0.12	12.0	0.2	0.29	10.8	0.0	1.6	2	0	0	2	2	2	0	MarR	family
DUF2513	PF10711.4	gi|55380147|ref|YP_137996.1|	-	0.13	12.3	0.1	0.16	12.0	0.1	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
DUF2029	PF09594.5	gi|55380148|ref|YP_137997.1|	-	0.025	14.0	12.1	0.031	13.7	8.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2029)
Polysacc_synt_C	PF14667.1	gi|55380148|ref|YP_137997.1|	-	0.13	12.0	10.9	0.18	11.6	7.5	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
DUF347	PF03988.7	gi|55380148|ref|YP_137997.1|	-	6.7	6.6	8.7	15	5.5	0.2	2.4	2	0	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
PsaL	PF02605.10	gi|55380149|ref|YP_137998.1|	-	0.014	14.9	0.8	0.02	14.3	0.4	1.2	1	1	0	1	1	1	0	Photosystem	I	reaction	centre	subunit	XI
YqhR	PF11085.3	gi|55380149|ref|YP_137998.1|	-	0.066	12.7	0.3	0.08	12.4	0.2	1.0	1	0	0	1	1	1	0	Conserved	membrane	protein	YqhR
SLAC1	PF03595.12	gi|55380149|ref|YP_137998.1|	-	0.093	11.3	3.6	0.1	11.1	2.5	1.0	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
FTSW_RODA_SPOVE	PF01098.14	gi|55380149|ref|YP_137998.1|	-	0.1	11.3	1.5	0.11	11.2	1.0	1.2	1	0	0	1	1	1	0	Cell	cycle	protein
DUF2976	PF11190.3	gi|55380149|ref|YP_137998.1|	-	2	8.0	7.0	0.76	9.3	0.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
Sensor	PF13796.1	gi|55380150|ref|YP_137999.1|	-	5.9e-37	127.0	25.6	7.1e-37	126.7	17.8	1.1	1	0	0	1	1	1	1	Putative	sensor
NDUF_B12	PF08122.7	gi|55380150|ref|YP_137999.1|	-	4	7.2	8.0	0.62	9.8	0.4	2.8	2	1	1	3	3	3	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
HTH_20	PF12840.2	gi|55380151|ref|YP_138000.1|	-	2.2e-07	30.5	0.0	3.6e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|55380151|ref|YP_138000.1|	-	1.3e-05	24.6	0.0	2.4e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380151|ref|YP_138000.1|	-	2.1e-05	23.8	0.0	7.4e-05	22.0	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55380151|ref|YP_138000.1|	-	2.6e-05	23.7	0.0	6.2e-05	22.5	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|55380151|ref|YP_138000.1|	-	7.6e-05	22.3	0.0	0.00016	21.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_7	PF02796.10	gi|55380151|ref|YP_138000.1|	-	7.8e-05	22.4	0.0	0.00013	21.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|55380151|ref|YP_138000.1|	-	0.00039	19.9	0.0	0.00064	19.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|55380151|ref|YP_138000.1|	-	0.00057	19.4	0.0	0.00092	18.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|55380151|ref|YP_138000.1|	-	0.00092	18.7	0.0	0.0024	17.4	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|55380151|ref|YP_138000.1|	-	0.0029	17.3	0.0	0.0082	15.8	0.0	1.8	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|55380151|ref|YP_138000.1|	-	0.0035	17.0	0.0	0.0063	16.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.1	gi|55380151|ref|YP_138000.1|	-	0.019	15.0	0.0	0.026	14.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_38	PF13936.1	gi|55380151|ref|YP_138000.1|	-	0.06	12.9	0.0	0.093	12.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|55380151|ref|YP_138000.1|	-	0.061	13.3	0.0	0.094	12.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HxlR	PF01638.12	gi|55380151|ref|YP_138000.1|	-	0.061	12.9	0.0	0.08	12.5	0.0	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_Crp_2	PF13545.1	gi|55380151|ref|YP_138000.1|	-	0.094	12.5	0.0	0.4	10.5	0.0	1.9	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
Aldedh	PF00171.17	gi|55380152|ref|YP_138001.1|	-	6.2e-172	572.0	0.7	7.1e-172	571.8	0.5	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|55380152|ref|YP_138001.1|	-	0.00083	18.1	0.0	0.0011	17.7	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
HTH_33	PF13592.1	gi|55380153|ref|YP_138002.1|	-	0.02	14.4	0.1	0.062	12.8	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
NIPSNAP	PF07978.8	gi|55380153|ref|YP_138002.1|	-	0.11	12.4	0.5	0.19	11.6	0.3	1.3	1	0	0	1	1	1	0	NIPSNAP
DDE_Tnp_1	PF01609.16	gi|55380154|ref|YP_138003.1|	-	7.7e-19	68.0	1.4	1.4e-18	67.2	0.9	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|55380154|ref|YP_138003.1|	-	7.4e-05	22.5	0.2	0.00012	21.8	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|55380154|ref|YP_138003.1|	-	0.0018	18.4	1.1	0.0048	17.0	0.8	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1772	PF08592.6	gi|55380154|ref|YP_138003.1|	-	0.037	13.7	0.0	0.059	13.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
Aldedh	PF00171.17	gi|55380155|ref|YP_138004.1|	-	4.3e-165	549.5	0.0	4.9e-165	549.3	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|55380155|ref|YP_138004.1|	-	0.0013	17.5	0.0	0.0023	16.7	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
DUF3813	PF12758.2	gi|55380155|ref|YP_138004.1|	-	0.15	12.1	0.1	0.3	11.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3813)
Copper-bind	PF00127.15	gi|55380157|ref|YP_138006.1|	-	2.5e-15	56.4	0.9	8.3e-15	54.8	0.2	2.0	1	1	1	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|55380157|ref|YP_138006.1|	-	0.00054	19.7	1.7	0.0011	18.8	1.2	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.1	gi|55380157|ref|YP_138006.1|	-	0.064	13.1	0.0	0.082	12.8	0.0	1.3	1	0	0	1	1	1	0	Cupredoxin-like	domain
DUF4434	PF14488.1	gi|55380158|ref|YP_138007.1|	-	0.042	13.5	0.1	0.06	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4434)
DUF2163	PF09931.4	gi|55380160|ref|YP_138009.1|	-	0.0083	15.9	0.0	0.0083	15.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2163)
TOBE_3	PF12857.2	gi|55380160|ref|YP_138009.1|	-	0.01	15.7	0.0	0.018	14.9	0.0	1.4	1	0	0	1	1	1	1	TOBE-like	domain
Crystall_2	PF09076.5	gi|55380160|ref|YP_138009.1|	-	0.012	15.3	0.0	0.021	14.5	0.0	1.4	2	0	0	2	2	2	0	Beta/Gamma	crystallin
TOBE_2	PF08402.5	gi|55380160|ref|YP_138009.1|	-	0.059	13.3	2.0	0.56	10.2	1.2	2.0	1	1	1	2	2	2	0	TOBE	domain
Inositol_P	PF00459.20	gi|55380161|ref|YP_138010.1|	-	1.9e-59	201.1	0.7	2.5e-59	200.8	0.5	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|55380161|ref|YP_138010.1|	-	0.059	12.1	0.0	0.1	11.3	0.0	1.3	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
SBP_bac_8	PF13416.1	gi|55380162|ref|YP_138011.1|	-	5.7e-19	68.9	1.4	7.4e-19	68.5	1.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|55380162|ref|YP_138011.1|	-	8.2e-16	58.6	6.7	4.1e-15	56.3	2.9	2.8	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|55380162|ref|YP_138011.1|	-	0.0089	15.9	3.3	0.023	14.6	2.3	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|55380162|ref|YP_138011.1|	-	0.025	13.7	1.5	0.048	12.8	1.0	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.17	gi|55380163|ref|YP_138012.1|	-	3.2e-12	46.3	12.8	3.2e-12	46.3	8.9	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|55380164|ref|YP_138013.1|	-	3.2e-16	59.4	16.9	3.2e-16	59.4	11.7	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|55380165|ref|YP_138014.1|	-	5.5e-34	117.4	0.0	8.3e-34	116.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55380165|ref|YP_138014.1|	-	5.1e-10	39.7	0.0	0.00016	21.7	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|55380165|ref|YP_138014.1|	-	6.2e-07	29.3	0.5	2e-06	27.6	0.1	2.1	2	0	0	2	2	1	1	TOBE	domain
AAA_15	PF13175.1	gi|55380165|ref|YP_138014.1|	-	1.5e-05	24.2	0.0	0.0015	17.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|55380165|ref|YP_138014.1|	-	0.00086	18.4	0.0	0.0016	17.5	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.24	gi|55380165|ref|YP_138014.1|	-	0.0019	18.4	0.0	0.0041	17.3	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|55380165|ref|YP_138014.1|	-	0.0024	17.1	0.0	0.0041	16.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|55380165|ref|YP_138014.1|	-	0.0032	16.7	0.0	0.18	11.0	0.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE	PF03459.12	gi|55380165|ref|YP_138014.1|	-	0.0034	17.4	0.7	0.013	15.6	0.1	2.2	2	0	0	2	2	2	1	TOBE	domain
AAA_22	PF13401.1	gi|55380165|ref|YP_138014.1|	-	0.0036	17.4	0.3	0.0087	16.1	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|55380165|ref|YP_138014.1|	-	0.0036	17.3	0.2	0.0075	16.2	0.2	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|55380165|ref|YP_138014.1|	-	0.016	14.6	0.0	0.16	11.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|55380165|ref|YP_138014.1|	-	0.029	13.0	0.0	0.04	12.5	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
Mg_chelatase	PF01078.16	gi|55380165|ref|YP_138014.1|	-	0.037	13.1	0.0	0.055	12.6	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.1	gi|55380165|ref|YP_138014.1|	-	0.052	13.8	0.2	0.086	13.1	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|55380165|ref|YP_138014.1|	-	0.072	12.5	0.0	1.7	8.0	0.0	2.2	2	0	0	2	2	2	0	AAA-like	domain
AAA_30	PF13604.1	gi|55380165|ref|YP_138014.1|	-	0.084	12.4	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|55380165|ref|YP_138014.1|	-	0.085	12.8	0.2	0.16	11.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|55380165|ref|YP_138014.1|	-	0.095	12.4	0.1	0.18	11.5	0.1	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|55380165|ref|YP_138014.1|	-	0.097	12.4	0.1	0.24	11.1	0.1	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|55380165|ref|YP_138014.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|55380165|ref|YP_138014.1|	-	0.13	12.1	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|55380165|ref|YP_138014.1|	-	0.14	11.6	0.0	0.3	10.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RicinB_lectin_2	PF14200.1	gi|55380166|ref|YP_138015.1|	-	4.3e-34	117.0	10.2	3.5e-19	69.0	0.5	2.6	1	1	1	2	2	2	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.17	gi|55380166|ref|YP_138015.1|	-	5.1e-13	49.1	1.8	1.9e-12	47.3	1.2	1.9	1	1	0	1	1	1	1	Ricin-type	beta-trefoil	lectin	domain
PI-PLC-X	PF00388.14	gi|55380166|ref|YP_138015.1|	-	0.027	13.8	0.0	0.067	12.5	0.0	1.6	2	0	0	2	2	2	0	Phosphatidylinositol-specific	phospholipase	C,	X	domain
Tropomyosin	PF00261.15	gi|55380167|ref|YP_138016.1|	-	0.0003	19.9	7.3	0.00049	19.2	5.1	1.3	1	0	0	1	1	1	1	Tropomyosin
Reo_sigmaC	PF04582.7	gi|55380167|ref|YP_138016.1|	-	0.054	12.6	2.7	1.3	8.0	0.1	2.1	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
SPX	PF03105.14	gi|55380167|ref|YP_138016.1|	-	0.13	12.0	2.1	0.14	11.9	1.4	1.2	1	0	0	1	1	1	0	SPX	domain
CorA	PF01544.13	gi|55380167|ref|YP_138016.1|	-	0.18	10.8	1.5	0.24	10.4	1.0	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
LPP	PF04728.8	gi|55380167|ref|YP_138016.1|	-	0.57	10.0	13.0	0.24	11.2	0.9	3.2	3	1	0	3	3	3	0	Lipoprotein	leucine-zipper
DUF4611	PF15387.1	gi|55380167|ref|YP_138016.1|	-	0.97	9.6	7.5	0.49	10.5	1.9	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4611)
Lge1	PF11488.3	gi|55380167|ref|YP_138016.1|	-	3.6	7.8	5.9	16	5.7	4.1	2.2	1	1	0	1	1	1	0	Transcriptional	regulatory	protein	LGE1
DUF1664	PF07889.7	gi|55380167|ref|YP_138016.1|	-	4.5	7.0	7.1	1.4	8.7	1.8	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
IncA	PF04156.9	gi|55380167|ref|YP_138016.1|	-	9.1	5.8	8.4	1.4	8.4	2.9	1.9	2	1	0	2	2	2	0	IncA	protein
PadR	PF03551.9	gi|55380170|ref|YP_138019.1|	-	6.8e-12	44.9	0.1	8.3e-12	44.7	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|55380170|ref|YP_138019.1|	-	0.0024	17.6	0.0	0.0035	17.1	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|55380170|ref|YP_138019.1|	-	0.0037	17.5	0.0	0.0052	17.0	0.0	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF3288	PF11691.3	gi|55380170|ref|YP_138019.1|	-	0.0062	16.2	0.6	0.0089	15.7	0.3	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3288)
HxlR	PF01638.12	gi|55380170|ref|YP_138019.1|	-	0.012	15.2	0.0	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF4364	PF14277.1	gi|55380170|ref|YP_138019.1|	-	0.016	14.8	0.0	0.018	14.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.1	gi|55380170|ref|YP_138019.1|	-	0.019	15.0	0.0	0.028	14.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FUR	PF01475.14	gi|55380170|ref|YP_138019.1|	-	0.026	14.4	0.0	0.028	14.3	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Replic_Relax	PF13814.1	gi|55380170|ref|YP_138019.1|	-	0.068	13.0	0.2	0.079	12.7	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
Amidase	PF01425.16	gi|55380171|ref|YP_138020.1|	-	1.1e-103	347.4	0.0	1.4e-103	347.0	0.0	1.1	1	0	0	1	1	1	1	Amidase
Ins_allergen_rp	PF06757.8	gi|55380173|ref|YP_138022.1|	-	0.073	12.5	0.1	0.08	12.4	0.1	1.1	1	0	0	1	1	1	0	Insect	allergen	related	repeat,	nitrile-specifier	detoxification
CopD	PF05425.8	gi|55380174|ref|YP_138023.1|	-	0.045	13.9	0.4	0.41	10.8	0.0	2.0	2	0	0	2	2	2	0	Copper	resistance	protein	D
DUF2556	PF10831.3	gi|55380174|ref|YP_138023.1|	-	0.058	13.0	0.4	1.4	8.6	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2556)
SdpI	PF13630.1	gi|55380174|ref|YP_138023.1|	-	0.076	12.7	0.8	0.24	11.1	0.0	1.9	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
DUF3953	PF13129.1	gi|55380174|ref|YP_138023.1|	-	0.16	11.6	0.5	0.16	11.6	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3953)
META	PF03724.11	gi|55380175|ref|YP_138024.1|	-	0.00018	21.3	3.3	0.14	12.0	0.2	3.0	3	1	0	3	3	3	2	META	domain
PEGA	PF08308.6	gi|55380175|ref|YP_138024.1|	-	0.012	15.3	0.1	0.056	13.2	0.0	2.2	2	0	0	2	2	2	0	PEGA	domain
HTH_20	PF12840.2	gi|55380176|ref|YP_138025.1|	-	6.4e-14	51.5	0.0	1.1e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55380176|ref|YP_138025.1|	-	5.8e-08	32.2	0.1	2e-07	30.5	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|55380176|ref|YP_138025.1|	-	1.9e-07	30.3	0.1	3.2e-07	29.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55380176|ref|YP_138025.1|	-	3.2e-07	29.8	0.0	5e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|55380176|ref|YP_138025.1|	-	0.00098	18.7	0.0	0.0018	17.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|55380176|ref|YP_138025.1|	-	0.013	15.2	0.0	0.028	14.1	0.0	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2513	PF10711.4	gi|55380176|ref|YP_138025.1|	-	0.018	15.1	0.0	0.028	14.4	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_34	PF13601.1	gi|55380176|ref|YP_138025.1|	-	0.023	14.7	0.0	0.038	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
COG5	PF10392.4	gi|55380176|ref|YP_138025.1|	-	0.043	13.7	0.1	0.091	12.7	0.1	1.5	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
HTH_11	PF08279.7	gi|55380176|ref|YP_138025.1|	-	0.05	13.2	0.1	0.083	12.5	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
Phage_rep_org_N	PF09681.5	gi|55380176|ref|YP_138025.1|	-	0.062	12.8	0.0	0.095	12.2	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Sigma70_r4	PF04545.11	gi|55380176|ref|YP_138025.1|	-	0.065	12.5	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
B-block_TFIIIC	PF04182.7	gi|55380176|ref|YP_138025.1|	-	0.066	13.0	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.1	gi|55380176|ref|YP_138025.1|	-	0.12	12.7	0.0	0.23	11.7	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3923	PF13061.1	gi|55380177|ref|YP_138026.1|	-	0.89	9.4	3.3	13	5.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3923)
FUSC	PF04632.7	gi|55380177|ref|YP_138026.1|	-	1.2	7.4	5.6	0.29	9.4	1.1	1.7	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
DUF3149	PF11346.3	gi|55380178|ref|YP_138027.1|	-	2.6	7.6	5.2	3.6	7.2	3.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
DDE_Tnp_1	PF01609.16	gi|55380179|ref|YP_138028.1|	-	1.1e-21	77.4	0.0	1.5e-21	76.9	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55380179|ref|YP_138028.1|	-	0.0035	17.3	0.1	0.0061	16.5	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
UPF0150	PF03681.10	gi|55380180|ref|YP_138029.1|	-	2.6e-06	26.9	0.1	5.1e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0150)
T2SG	PF08334.6	gi|55380180|ref|YP_138029.1|	-	0.072	12.8	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	G
YcfA	PF07927.7	gi|55380181|ref|YP_138030.1|	-	8.2e-13	48.0	0.0	1.2e-12	47.5	0.0	1.3	1	0	0	1	1	1	1	YcfA-like	protein
Fic	PF02661.13	gi|55380184|ref|YP_138033.1|	-	8.3e-05	23.2	0.0	0.00017	22.2	0.0	1.5	2	0	0	2	2	2	1	Fic/DOC	family
HATPase_c	PF02518.21	gi|55380186|ref|YP_138035.1|	-	4.9e-15	55.2	0.0	8.7e-15	54.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.19	gi|55380186|ref|YP_138035.1|	-	1.5e-09	37.6	0.0	1.8e-08	34.1	0.0	2.6	3	0	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.1	gi|55380186|ref|YP_138035.1|	-	6.6e-08	32.3	0.0	1.4e-07	31.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.5	gi|55380186|ref|YP_138035.1|	-	6e-07	29.4	0.2	0.0038	17.2	0.0	3.4	3	1	0	3	3	3	2	PAS	fold
PAS_9	PF13426.1	gi|55380186|ref|YP_138035.1|	-	2.9e-06	27.5	0.0	8.4e-05	22.9	0.0	2.6	2	0	0	2	2	2	1	PAS	domain
PAS_10	PF13596.1	gi|55380186|ref|YP_138035.1|	-	0.022	15.0	0.0	0.14	12.4	0.0	2.2	2	0	0	2	2	2	0	PAS	domain
HATPase_c_3	PF13589.1	gi|55380186|ref|YP_138035.1|	-	0.059	13.0	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|55380186|ref|YP_138035.1|	-	0.17	11.5	0.0	0.46	10.2	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
HisKA	PF00512.20	gi|55380186|ref|YP_138035.1|	-	1.8	8.5	5.9	0.41	10.6	0.6	2.4	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
RHH_1	PF01402.16	gi|55380187|ref|YP_138036.1|	-	0.00014	21.5	0.3	0.00029	20.6	0.0	1.6	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF2191	PF09957.4	gi|55380187|ref|YP_138036.1|	-	0.0011	18.6	2.5	0.0057	16.4	0.6	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
DUF1160	PF06648.6	gi|55380187|ref|YP_138036.1|	-	0.014	15.1	0.1	0.019	14.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1160)
DUF1778	PF08681.6	gi|55380187|ref|YP_138036.1|	-	0.021	14.6	0.2	0.037	13.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1778)
PSK_trans_fac	PF07704.6	gi|55380187|ref|YP_138036.1|	-	0.033	14.8	0.9	0.095	13.3	0.6	1.9	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
Birna_RdRp	PF04197.7	gi|55380187|ref|YP_138036.1|	-	0.095	10.7	0.0	0.095	10.7	0.0	1.0	1	0	0	1	1	1	0	Birnavirus	RNA	dependent	RNA	polymerase	(VP1)
PIN_4	PF13638.1	gi|55380188|ref|YP_138037.1|	-	0.045	13.8	0.9	0.23	11.5	0.1	2.0	1	1	0	2	2	2	0	PIN	domain
DUF2157	PF09925.4	gi|55380189|ref|YP_138038.1|	-	0.0006	19.4	9.4	0.00079	19.0	6.5	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2157)
DUF2215	PF10225.4	gi|55380189|ref|YP_138038.1|	-	0.13	11.7	3.9	0.26	10.6	2.7	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2215)
DUF2975	PF11188.3	gi|55380189|ref|YP_138038.1|	-	6.9	6.4	10.0	8.8	6.0	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
DUF998	PF06197.8	gi|55380190|ref|YP_138039.1|	-	0.55	9.5	7.4	0.88	8.8	5.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
DDE_Tnp_1	PF01609.16	gi|55380195|ref|YP_138044.1|	-	3.6e-22	78.9	0.3	4.5e-22	78.6	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|55380195|ref|YP_138044.1|	-	0.095	11.6	0.0	0.13	11.2	0.0	1.2	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
TFIIB	PF00382.14	gi|55380197|ref|YP_138046.1|	-	6.7e-08	32.2	0.0	1e-07	31.6	0.0	1.4	1	0	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_23	PF13384.1	gi|55380197|ref|YP_138046.1|	-	0.047	13.3	1.2	0.76	9.5	0.0	2.8	2	1	1	3	3	3	0	Homeodomain-like	domain
RHH_1	PF01402.16	gi|55380198|ref|YP_138047.1|	-	0.079	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Plasmid_stabil	PF05016.9	gi|55380199|ref|YP_138048.1|	-	0.00011	22.5	0.0	0.00014	22.1	0.0	1.2	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
HATPase_c	PF02518.21	gi|55380202|ref|YP_138051.1|	-	4.4e-21	74.6	0.0	1.2e-20	73.2	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|55380202|ref|YP_138051.1|	-	1.9e-15	56.1	0.1	6.6e-07	28.9	0.0	3.2	3	0	0	3	3	3	2	PAS	domain
PAS_4	PF08448.5	gi|55380202|ref|YP_138051.1|	-	8.6e-13	48.2	0.0	1.1e-05	25.3	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.1	gi|55380202|ref|YP_138051.1|	-	2.9e-12	46.8	0.3	4.2e-08	33.4	0.0	3.4	3	0	0	3	3	3	2	PAS	domain
PAS	PF00989.19	gi|55380202|ref|YP_138051.1|	-	1e-11	44.6	0.0	1.4e-08	34.5	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
PAS_7	PF12860.2	gi|55380202|ref|YP_138051.1|	-	3.6e-08	33.4	0.4	1.4e-06	28.2	0.0	3.5	3	0	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.1	gi|55380202|ref|YP_138051.1|	-	1.2e-06	28.3	0.1	0.0001	22.0	0.0	3.2	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|55380202|ref|YP_138051.1|	-	5.6e-06	25.9	0.0	2.6e-05	23.8	0.0	2.2	1	0	0	1	1	1	1	GHKL	domain
GAF_2	PF13185.1	gi|55380202|ref|YP_138051.1|	-	7.9e-05	23.1	0.2	0.024	15.1	0.1	2.7	2	0	0	2	2	2	1	GAF	domain
HAMP	PF00672.20	gi|55380202|ref|YP_138051.1|	-	0.00043	20.3	1.2	0.0056	16.8	0.0	3.0	2	1	0	2	2	2	1	HAMP	domain
PAS_3	PF08447.6	gi|55380202|ref|YP_138051.1|	-	0.00054	20.0	0.0	0.0015	18.5	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.20	gi|55380202|ref|YP_138051.1|	-	0.00091	19.1	3.2	0.0069	16.3	2.2	2.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|55380202|ref|YP_138051.1|	-	0.017	14.8	0.1	0.043	13.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.1	gi|55380202|ref|YP_138051.1|	-	0.02	14.4	4.3	0.019	14.4	1.4	2.3	2	0	0	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PadR	PF03551.9	gi|55380203|ref|YP_138052.1|	-	4.3e-13	48.8	0.3	5.1e-13	48.5	0.2	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|55380203|ref|YP_138052.1|	-	0.00053	19.7	0.2	0.00074	19.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MotA_activ	PF09114.5	gi|55380203|ref|YP_138052.1|	-	0.0076	15.9	0.0	0.0092	15.7	0.0	1.2	1	0	0	1	1	1	1	Transcription	factor	MotA,	activation	domain
HTH_34	PF13601.1	gi|55380203|ref|YP_138052.1|	-	0.013	15.5	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|55380203|ref|YP_138052.1|	-	0.013	15.1	0.1	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF1495	PF07381.6	gi|55380203|ref|YP_138052.1|	-	0.02	14.5	0.0	0.031	13.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.1	gi|55380203|ref|YP_138052.1|	-	0.034	14.4	0.0	0.04	14.2	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.1	gi|55380203|ref|YP_138052.1|	-	0.053	13.1	0.0	0.11	12.1	0.0	1.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4364)
MarR_2	PF12802.2	gi|55380203|ref|YP_138052.1|	-	0.067	12.8	0.0	1.4	8.6	0.0	2.2	2	0	0	2	2	2	0	MarR	family
TACC	PF05010.9	gi|55380205|ref|YP_138054.1|	-	0.0066	16.2	0.1	0.0073	16.0	0.1	1.1	1	0	0	1	1	1	1	Transforming	acidic	coiled-coil-containing	protein	(TACC)
PadR	PF03551.9	gi|55380206|ref|YP_138055.1|	-	6.7e-15	54.6	0.7	8.6e-15	54.2	0.5	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|55380206|ref|YP_138055.1|	-	0.021	14.5	0.0	0.03	14.0	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|55380206|ref|YP_138055.1|	-	0.062	12.9	0.3	9.3	6.0	0.1	2.9	3	0	0	3	3	3	0	MarR	family
COG2	PF06148.6	gi|55380209|ref|YP_138058.1|	-	0.21	11.4	0.0	0.21	11.4	0.0	2.4	3	0	0	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
VWA_2	PF13519.1	gi|55380211|ref|YP_138060.1|	-	3.4e-25	89.1	6.8	1.3e-24	87.2	4.7	2.2	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|55380211|ref|YP_138060.1|	-	4.6e-22	78.5	4.3	1e-21	77.4	3.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|55380211|ref|YP_138060.1|	-	9.5e-10	38.3	2.3	3.4e-07	30.0	0.0	2.6	2	0	0	2	2	2	2	von	Willebrand	factor	type	A	domain
DUF2201	PF09967.4	gi|55380211|ref|YP_138060.1|	-	3.7e-05	23.7	0.5	0.00011	22.2	0.2	2.0	2	0	0	2	2	2	1	VWA-like	domain	(DUF2201)
Dockerin_1	PF00404.13	gi|55380211|ref|YP_138060.1|	-	0.02	14.6	3.6	0.039	13.6	0.5	3.4	2	0	0	2	2	2	0	Dockerin	type	I	repeat
Spore_III_AF	PF09581.5	gi|55380211|ref|YP_138060.1|	-	0.25	11.1	0.0	0.59	9.9	0.0	1.6	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
Glypican	PF01153.14	gi|55380212|ref|YP_138061.1|	-	0.47	9.0	3.4	0.58	8.7	2.4	1.2	1	0	0	1	1	1	0	Glypican
Nop14	PF04147.7	gi|55380212|ref|YP_138061.1|	-	7.2	4.3	7.2	7.9	4.2	5.0	1.0	1	0	0	1	1	1	0	Nop14-like	family
DUF1250	PF06855.7	gi|55380213|ref|YP_138062.1|	-	0.014	14.8	0.0	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1250)
OTOS	PF15182.1	gi|55380213|ref|YP_138062.1|	-	0.13	11.9	0.0	0.24	11.1	0.0	1.6	1	1	1	2	2	2	0	Otospiralin
FANCL_C	PF11793.3	gi|55380214|ref|YP_138063.1|	-	0.0021	17.9	0.6	0.33	10.9	0.1	2.1	1	1	1	2	2	2	2	FANCL	C-terminal	domain
Terminase_GpA	PF05876.7	gi|55380214|ref|YP_138063.1|	-	0.016	13.5	0.4	0.016	13.5	0.3	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-Di19	PF05605.7	gi|55380214|ref|YP_138063.1|	-	0.033	14.3	0.1	0.045	13.8	0.1	1.3	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_5	PF13719.1	gi|55380214|ref|YP_138063.1|	-	0.065	12.8	0.2	3.1	7.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|55380214|ref|YP_138063.1|	-	0.072	12.7	0.1	8.6	6.1	0.0	2.0	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Opy2	PF09463.5	gi|55380214|ref|YP_138063.1|	-	0.072	13.1	1.2	4.4	7.4	0.1	2.1	2	0	0	2	2	2	0	Opy2	protein
PADR1	PF08063.7	gi|55380214|ref|YP_138063.1|	-	0.15	11.4	0.4	10	5.6	0.1	2.1	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
DZR	PF12773.2	gi|55380214|ref|YP_138063.1|	-	0.2	11.4	1.7	1.8	8.4	1.2	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-dskA_traR	PF01258.12	gi|55380214|ref|YP_138063.1|	-	0.26	11.0	2.1	4.6	7.0	0.0	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
UPF0547	PF10571.4	gi|55380214|ref|YP_138063.1|	-	1.2	8.8	8.1	1.9	8.2	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Tic20	PF09685.5	gi|55380215|ref|YP_138064.1|	-	1.5e-15	57.1	5.5	1.5e-15	57.1	3.8	3.2	2	1	0	2	2	2	1	Tic20-like	protein
DUF4231	PF14015.1	gi|55380215|ref|YP_138064.1|	-	0.8	9.7	15.3	0.77	9.7	0.2	3.2	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
HTH_20	PF12840.2	gi|55380216|ref|YP_138065.1|	-	0.0024	17.6	0.0	0.0042	16.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|55380216|ref|YP_138065.1|	-	0.0098	15.5	0.5	0.023	14.3	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_Tnp_Tc3_2	PF01498.13	gi|55380216|ref|YP_138065.1|	-	0.056	13.5	0.0	0.097	12.7	0.0	1.3	1	0	0	1	1	1	0	Transposase
Replic_Relax	PF13814.1	gi|55380216|ref|YP_138065.1|	-	0.058	13.2	0.0	0.073	12.9	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
FUR	PF01475.14	gi|55380216|ref|YP_138065.1|	-	0.074	12.9	0.0	0.098	12.5	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_DeoR	PF08220.7	gi|55380216|ref|YP_138065.1|	-	0.094	12.2	0.9	0.22	11.1	0.0	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
DUF4199	PF13858.1	gi|55380217|ref|YP_138066.1|	-	3.6	7.4	10.5	8	6.3	7.3	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
DUF805	PF05656.9	gi|55380217|ref|YP_138066.1|	-	5.5	6.8	11.4	6.9	6.5	2.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF805)
DUF21	PF01595.15	gi|55380218|ref|YP_138067.1|	-	6.7e-27	93.9	0.2	1.1e-26	93.3	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|55380218|ref|YP_138067.1|	-	2.3e-15	56.0	0.2	7.9e-09	35.1	0.1	2.4	2	0	0	2	2	2	2	CBS	domain
DUF4423	PF14394.1	gi|55380219|ref|YP_138068.1|	-	0.00071	19.1	0.0	0.00099	18.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
DUF308	PF03729.8	gi|55380219|ref|YP_138068.1|	-	0.0011	18.9	1.8	0.0011	18.9	1.2	2.0	2	0	0	2	2	2	1	Short	repeat	of	unknown	function	(DUF308)
TrmB	PF01978.14	gi|55380219|ref|YP_138068.1|	-	0.0025	17.4	0.1	0.0092	15.6	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|55380219|ref|YP_138068.1|	-	0.0069	15.9	0.2	0.012	15.1	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55380219|ref|YP_138068.1|	-	0.0093	15.6	0.1	0.016	14.8	0.1	1.3	1	0	0	1	1	1	1	MarR	family
Sigma70_r3	PF04539.11	gi|55380219|ref|YP_138068.1|	-	0.012	15.4	0.2	0.024	14.5	0.1	1.5	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_27	PF13463.1	gi|55380219|ref|YP_138068.1|	-	0.017	15.4	0.2	0.052	13.8	0.1	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|55380219|ref|YP_138068.1|	-	0.018	14.8	0.4	0.03	14.1	0.3	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380219|ref|YP_138068.1|	-	0.029	13.7	0.1	0.059	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Phage_rep_org_N	PF09681.5	gi|55380219|ref|YP_138068.1|	-	0.1	12.2	0.0	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_34	PF13601.1	gi|55380219|ref|YP_138068.1|	-	0.12	12.4	0.0	0.29	11.2	0.0	1.6	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF2892	PF11127.3	gi|55380219|ref|YP_138068.1|	-	3.8	7.4	11.6	0.71	9.7	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Phage_integrase	PF00589.17	gi|55380221|ref|YP_138070.1|	-	9.4e-07	28.6	0.0	3.1e-06	26.9	0.0	1.8	1	1	0	1	1	1	1	Phage	integrase	family
HATPase_c	PF02518.21	gi|55380222|ref|YP_138071.1|	-	8e-05	22.3	0.0	8.6e-05	22.2	0.0	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|55380223|ref|YP_138072.1|	-	2.7e-186	606.0	11.2	2.3e-27	95.4	0.0	13.8	13	0	0	13	13	13	13	PAS	domain
PAS	PF00989.19	gi|55380223|ref|YP_138072.1|	-	1.5e-122	401.6	10.5	1.4e-13	50.5	0.0	13.5	13	0	0	13	13	13	13	PAS	fold
PAS_4	PF08448.5	gi|55380223|ref|YP_138072.1|	-	2.2e-113	372.1	52.0	5.8e-14	52.0	0.1	13.8	14	0	0	14	14	14	12	PAS	fold
PAS_3	PF08447.6	gi|55380223|ref|YP_138072.1|	-	9.9e-71	233.9	10.5	2.4e-13	49.9	0.0	12.4	13	0	0	13	13	13	7	PAS	fold
PAS_8	PF13188.1	gi|55380223|ref|YP_138072.1|	-	2.1e-46	154.2	3.0	2.2e-05	24.1	0.0	10.9	10	0	0	10	10	10	9	PAS	domain
GAF_3	PF13492.1	gi|55380223|ref|YP_138072.1|	-	5.4e-23	81.4	0.2	1.1e-08	35.2	0.0	4.2	3	0	0	3	3	3	3	GAF	domain
PAS_10	PF13596.1	gi|55380223|ref|YP_138072.1|	-	3.8e-20	72.1	0.0	0.0045	17.2	0.0	9.3	11	0	0	11	11	10	4	PAS	domain
GAF_2	PF13185.1	gi|55380223|ref|YP_138072.1|	-	6.2e-16	59.2	3.9	3.4e-08	34.0	0.1	4.7	4	0	0	4	4	4	2	GAF	domain
HATPase_c	PF02518.21	gi|55380223|ref|YP_138072.1|	-	8.7e-15	54.3	0.0	2.6e-14	52.8	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.21	gi|55380223|ref|YP_138072.1|	-	7.5e-12	45.6	0.8	1.6e-07	31.5	0.1	4.3	4	0	0	4	4	3	2	GAF	domain
PAS_11	PF14598.1	gi|55380223|ref|YP_138072.1|	-	5.3e-11	42.4	0.0	0.031	14.2	0.0	8.5	10	0	0	10	10	10	2	PAS	domain
PAS_7	PF12860.2	gi|55380223|ref|YP_138072.1|	-	0.0003	20.7	13.3	0.02	14.8	0.0	8.6	9	1	0	9	9	9	1	PAS	fold
HisKA	PF00512.20	gi|55380223|ref|YP_138072.1|	-	0.0013	18.6	1.5	0.022	14.7	0.0	3.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|55380223|ref|YP_138072.1|	-	0.022	14.4	0.0	0.049	13.2	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
V_ATPase_I	PF01496.14	gi|55380223|ref|YP_138072.1|	-	9.7	3.8	1.1	66	1.1	0.1	2.4	3	0	0	3	3	3	0	V-type	ATPase	116kDa	subunit	family
DDE_5	PF13546.1	gi|55380224|ref|YP_138073.1|	-	1.6e-12	46.9	0.0	1.8e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
AAA_28	PF13521.1	gi|55380224|ref|YP_138073.1|	-	0.063	13.2	0.4	0.099	12.5	0.0	1.4	2	0	0	2	2	2	0	AAA	domain
DDE_Tnp_IS240	PF13610.1	gi|55380225|ref|YP_138074.1|	-	9.1e-21	74.3	0.3	1.3e-20	73.7	0.2	1.3	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|55380225|ref|YP_138074.1|	-	6.5e-08	31.9	1.9	1.3e-07	31.0	1.3	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|55380225|ref|YP_138074.1|	-	0.00041	20.4	0.2	0.00092	19.3	0.1	1.7	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.5	gi|55380225|ref|YP_138074.1|	-	0.00065	19.5	0.8	0.22	11.4	0.0	2.7	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2384)
DDE_Tnp_IS66	PF03050.9	gi|55380225|ref|YP_138074.1|	-	0.015	14.5	0.2	0.026	13.7	0.1	1.6	1	1	0	1	1	1	0	Transposase	IS66	family
ASCH	PF04266.9	gi|55380226|ref|YP_138075.1|	-	7.1e-08	32.7	0.0	8.4e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	ASCH	domain
SPC12	PF06645.8	gi|55380227|ref|YP_138076.1|	-	0.29	10.9	2.7	0.37	10.6	1.9	1.2	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
Peptidase_M50	PF02163.17	gi|55380227|ref|YP_138076.1|	-	0.31	9.9	3.8	0.34	9.8	2.6	1.1	1	0	0	1	1	1	0	Peptidase	family	M50
PrgI	PF12666.2	gi|55380227|ref|YP_138076.1|	-	0.81	9.8	4.1	1.3	9.2	2.8	1.3	1	0	0	1	1	1	0	PrgI	family	protein
DUF2892	PF11127.3	gi|55380227|ref|YP_138076.1|	-	6.2	6.7	6.5	8.6	6.2	4.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
TIM-br_sig_trns	PF09370.5	gi|55380228|ref|YP_138077.1|	-	7.6e-132	438.3	0.1	8.6e-132	438.1	0.1	1.0	1	0	0	1	1	1	1	TIM-barrel	signal	transduction	protein
NMO	PF03060.10	gi|55380228|ref|YP_138077.1|	-	0.00067	18.8	0.3	0.0011	18.2	0.2	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
Amidohydro_2	PF04909.9	gi|55380228|ref|YP_138077.1|	-	0.045	13.3	0.2	0.086	12.3	0.1	1.4	1	1	0	1	1	1	0	Amidohydrolase
Cupin_2	PF07883.6	gi|55380229|ref|YP_138078.1|	-	2.2e-20	71.9	2.3	3.1e-20	71.4	1.6	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.17	gi|55380229|ref|YP_138078.1|	-	2.5e-09	36.7	0.0	3.5e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.14	gi|55380229|ref|YP_138078.1|	-	8.3e-09	35.2	0.0	1e-08	34.9	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.7	gi|55380229|ref|YP_138078.1|	-	4.6e-08	32.3	0.6	6.9e-08	31.7	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
MannoseP_isomer	PF01050.13	gi|55380229|ref|YP_138078.1|	-	1.3e-06	28.1	0.0	1.5e-06	27.9	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
CENP-C_C	PF11699.3	gi|55380229|ref|YP_138078.1|	-	3.5e-06	26.8	0.0	5.8e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
GPI	PF06560.6	gi|55380229|ref|YP_138078.1|	-	0.00096	18.2	0.2	0.0014	17.7	0.2	1.3	1	1	0	1	1	1	1	Glucose-6-phosphate	isomerase	(GPI)
Cupin_7	PF12973.2	gi|55380229|ref|YP_138078.1|	-	0.0028	17.4	0.2	0.0049	16.6	0.1	1.4	1	1	0	1	1	1	1	ChrR	Cupin-like	domain
ARD	PF03079.9	gi|55380229|ref|YP_138078.1|	-	0.0048	16.8	0.4	0.0069	16.3	0.3	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
Cupin_6	PF12852.2	gi|55380229|ref|YP_138078.1|	-	0.01	15.4	0.0	0.015	14.8	0.0	1.4	1	1	0	1	1	1	0	Cupin
Pirin_C	PF05726.8	gi|55380229|ref|YP_138078.1|	-	0.016	15.3	0.0	0.021	14.8	0.0	1.2	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
EutQ	PF06249.7	gi|55380229|ref|YP_138078.1|	-	0.094	12.2	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
CDO_I	PF05995.7	gi|55380229|ref|YP_138078.1|	-	0.12	11.5	0.1	0.16	11.1	0.0	1.4	1	1	0	1	1	1	0	Cysteine	dioxygenase	type	I
UPF0261	PF06792.6	gi|55380230|ref|YP_138079.1|	-	3.5e-175	582.3	5.8	4e-175	582.1	4.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0261)
DoxX_3	PF13781.1	gi|55380231|ref|YP_138080.1|	-	1.2e-05	25.5	6.7	1.9e-05	24.9	2.0	2.2	1	1	1	2	2	2	1	DoxX-like	family
DoxX_2	PF13564.1	gi|55380231|ref|YP_138080.1|	-	0.0015	18.4	8.8	0.0026	17.6	6.1	1.4	1	0	0	1	1	1	1	DoxX-like	family
MauE	PF07291.6	gi|55380231|ref|YP_138080.1|	-	0.12	12.0	7.8	0.16	11.5	5.4	1.3	1	0	0	1	1	1	0	Methylamine	utilisation	protein	MauE
DoxX	PF07681.7	gi|55380231|ref|YP_138080.1|	-	0.34	11.3	10.9	1	9.8	7.6	1.8	1	1	0	1	1	1	0	DoxX
Peptidase_A24	PF01478.13	gi|55380231|ref|YP_138080.1|	-	3	8.0	6.9	16	5.7	4.8	2.0	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
VIT1	PF01988.14	gi|55380232|ref|YP_138081.1|	-	1.2e-12	47.7	3.4	1.4e-12	47.5	2.3	1.0	1	0	0	1	1	1	1	VIT	family
ATG22	PF11700.3	gi|55380232|ref|YP_138081.1|	-	0.0058	15.1	2.2	0.0069	14.9	1.5	1.1	1	0	0	1	1	1	1	Vacuole	effluxer	Atg22	like
ATP-synt_J	PF04911.7	gi|55380232|ref|YP_138081.1|	-	0.12	11.8	0.4	0.21	11.0	0.2	1.4	1	0	0	1	1	1	0	ATP	synthase	j	chain
DUF1700	PF08006.6	gi|55380232|ref|YP_138081.1|	-	0.22	10.7	0.7	0.24	10.6	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
DUF1761	PF08570.5	gi|55380232|ref|YP_138081.1|	-	0.4	10.7	5.4	0.67	9.9	3.8	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1761)
DUF211	PF02680.9	gi|55380233|ref|YP_138082.1|	-	1.7e-35	120.7	0.4	1.8e-35	120.5	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
HMA	PF00403.21	gi|55380233|ref|YP_138082.1|	-	0.035	14.2	0.1	0.067	13.3	0.1	1.5	1	0	0	1	1	1	0	Heavy-metal-associated	domain
Sipho_Gp157	PF05565.6	gi|55380233|ref|YP_138082.1|	-	0.14	11.7	0.1	0.19	11.3	0.1	1.2	1	0	0	1	1	1	0	Siphovirus	Gp157
Usp	PF00582.21	gi|55380234|ref|YP_138083.1|	-	1.3e-59	200.4	4.5	4.5e-29	101.4	0.3	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
Flg_bbr_C	PF06429.8	gi|55380235|ref|YP_138084.1|	-	0.045	13.6	0.0	0.095	12.6	0.0	1.6	1	0	0	1	1	1	0	Flagellar	basal	body	rod	FlgEFG	protein	C-terminal
zinc_ribbon_2	PF13240.1	gi|55380236|ref|YP_138085.1|	-	0.088	12.3	4.3	0.18	11.3	0.2	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|55380236|ref|YP_138085.1|	-	0.13	12.0	3.6	0.29	10.9	0.5	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
ZZ	PF00569.12	gi|55380236|ref|YP_138085.1|	-	0.14	11.6	0.4	0.14	11.6	0.3	1.8	2	1	0	2	2	2	0	Zinc	finger,	ZZ	type
DUF2116	PF09889.4	gi|55380236|ref|YP_138085.1|	-	0.32	10.8	0.2	0.32	10.8	0.1	2.3	3	0	0	3	3	3	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-ribbon_3	PF13248.1	gi|55380236|ref|YP_138085.1|	-	1	8.6	4.1	3.5	6.9	1.6	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
Pyr_redox_2	PF07992.9	gi|55380238|ref|YP_138087.1|	-	1.6e-43	148.9	0.6	2.7e-43	148.2	0.4	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|55380238|ref|YP_138087.1|	-	1.1e-36	125.1	1.3	2.4e-36	124.1	0.9	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|55380238|ref|YP_138087.1|	-	4.7e-22	78.1	6.0	7.8e-19	67.8	0.0	3.3	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|55380238|ref|YP_138087.1|	-	7.4e-09	34.9	3.7	1.4e-06	27.4	1.7	2.7	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|55380238|ref|YP_138087.1|	-	1.6e-08	33.8	10.0	9.1e-07	28.0	1.2	4.0	3	1	1	4	4	4	1	FAD	binding	domain
DAO	PF01266.19	gi|55380238|ref|YP_138087.1|	-	1.7e-07	30.5	10.4	0.00036	19.5	0.6	3.7	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|55380238|ref|YP_138087.1|	-	7.6e-07	28.5	1.4	7.6e-07	28.5	1.0	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|55380238|ref|YP_138087.1|	-	9.2e-07	28.8	4.4	0.0011	18.9	0.6	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|55380238|ref|YP_138087.1|	-	1e-06	27.5	5.1	0.00013	20.5	0.3	3.5	3	1	0	4	4	4	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|55380238|ref|YP_138087.1|	-	2.2e-06	27.9	0.1	5.4e-05	23.3	0.0	2.3	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|55380238|ref|YP_138087.1|	-	1.8e-05	24.2	0.3	0.00027	20.3	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|55380238|ref|YP_138087.1|	-	3.4e-05	23.5	3.1	0.0019	17.8	0.0	3.2	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|55380238|ref|YP_138087.1|	-	9.8e-05	21.5	5.5	0.082	11.9	0.5	2.7	2	1	1	3	3	3	2	FAD	binding	domain
Thi4	PF01946.12	gi|55380238|ref|YP_138087.1|	-	0.00033	19.8	1.6	0.062	12.3	0.1	2.4	2	0	0	2	2	2	2	Thi4	family
Lycopene_cycl	PF05834.7	gi|55380238|ref|YP_138087.1|	-	0.0011	17.9	2.2	0.14	11.0	0.4	2.5	3	0	0	3	3	3	2	Lycopene	cyclase	protein
XdhC_C	PF13478.1	gi|55380238|ref|YP_138087.1|	-	0.0011	19.2	0.1	0.02	15.2	0.0	2.5	2	0	0	2	2	2	1	XdhC	Rossmann	domain
AlaDh_PNT_C	PF01262.16	gi|55380238|ref|YP_138087.1|	-	0.0065	16.0	0.9	0.15	11.6	0.0	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.9	gi|55380238|ref|YP_138087.1|	-	0.011	14.4	0.9	0.043	12.4	0.2	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
TrkA_N	PF02254.13	gi|55380238|ref|YP_138087.1|	-	0.021	14.8	2.4	0.096	12.6	0.0	2.7	3	0	0	3	3	2	0	TrkA-N	domain
NAD_binding_9	PF13454.1	gi|55380238|ref|YP_138087.1|	-	0.6	9.8	3.2	0.69	9.6	0.1	2.6	4	0	0	4	4	4	0	FAD-NAD(P)-binding
2-oxoacid_dh	PF00198.18	gi|55380239|ref|YP_138088.1|	-	7.7e-88	293.6	0.1	1.1e-87	293.1	0.0	1.2	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.17	gi|55380239|ref|YP_138088.1|	-	8e-23	79.8	1.0	1.8e-22	78.7	0.7	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.12	gi|55380239|ref|YP_138088.1|	-	2.4e-10	39.8	0.4	5.7e-06	25.8	0.3	2.9	2	1	0	2	2	2	2	e3	binding	domain
GCV_H	PF01597.14	gi|55380239|ref|YP_138088.1|	-	4.9e-05	23.0	0.7	0.00024	20.7	0.3	2.2	1	1	1	2	2	2	1	Glycine	cleavage	H-protein
Biotin_lipoyl_2	PF13533.1	gi|55380239|ref|YP_138088.1|	-	0.00025	20.6	8.9	0.00053	19.5	0.6	3.4	3	1	1	4	4	4	1	Biotin-lipoyl	like
HlyD_3	PF13437.1	gi|55380239|ref|YP_138088.1|	-	0.00089	19.5	0.8	0.058	13.7	0.2	3.2	1	1	1	2	2	2	1	HlyD	family	secretion	protein
HlyD_2	PF12700.2	gi|55380239|ref|YP_138088.1|	-	0.0018	17.4	5.0	1.5	7.8	4.3	3.3	1	1	1	2	2	2	1	HlyD	family	secretion	protein
DUF3614	PF12267.3	gi|55380239|ref|YP_138088.1|	-	3.6	7.8	15.6	8.5	6.6	0.1	4.1	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3614)
Transket_pyr	PF02779.19	gi|55380240|ref|YP_138089.1|	-	8.2e-49	165.4	0.0	1.1e-48	165.0	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|55380240|ref|YP_138089.1|	-	2.7e-34	117.7	0.0	6e-34	116.6	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
E1_dh	PF00676.15	gi|55380241|ref|YP_138090.1|	-	1e-80	270.7	0.0	1.3e-80	270.3	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|55380241|ref|YP_138090.1|	-	1.9e-07	30.2	0.0	3.6e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.16	gi|55380241|ref|YP_138090.1|	-	6.1e-06	25.2	0.0	1.3e-05	24.2	0.0	1.6	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
TPP_enzyme_C	PF02775.16	gi|55380241|ref|YP_138090.1|	-	0.00042	19.9	0.1	0.0027	17.2	0.1	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
ABC_tran	PF00005.22	gi|55380242|ref|YP_138091.1|	-	8.5e-29	100.5	0.0	1.3e-28	100.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55380242|ref|YP_138091.1|	-	1.7e-13	51.1	0.1	1.2e-10	41.8	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|55380242|ref|YP_138091.1|	-	0.00019	20.7	1.7	0.0042	16.3	1.1	2.3	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|55380242|ref|YP_138091.1|	-	0.00067	19.1	0.1	0.0018	17.7	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|55380242|ref|YP_138091.1|	-	0.0018	18.6	0.1	0.0019	18.5	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|55380242|ref|YP_138091.1|	-	0.0041	16.5	0.5	0.012	15.0	0.3	1.7	1	1	1	2	2	2	1	AAA-like	domain
AAA_15	PF13175.1	gi|55380242|ref|YP_138091.1|	-	0.0068	15.4	0.0	0.085	11.8	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|55380242|ref|YP_138091.1|	-	0.011	15.6	0.2	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55380242|ref|YP_138091.1|	-	0.015	15.4	1.0	0.19	11.8	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
MutS_V	PF00488.16	gi|55380242|ref|YP_138091.1|	-	0.025	14.0	0.0	0.042	13.2	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	V
AAA_17	PF13207.1	gi|55380242|ref|YP_138091.1|	-	0.031	15.1	0.4	0.12	13.2	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|55380242|ref|YP_138091.1|	-	0.046	12.4	0.3	0.12	11.1	0.1	1.7	2	0	0	2	2	2	0	ArgK	protein
AAA_25	PF13481.1	gi|55380242|ref|YP_138091.1|	-	0.048	13.0	0.0	0.36	10.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|55380242|ref|YP_138091.1|	-	0.049	13.5	0.2	0.11	12.3	0.1	1.7	2	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|55380242|ref|YP_138091.1|	-	0.053	13.0	0.5	0.11	12.0	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|55380242|ref|YP_138091.1|	-	0.09	11.6	0.3	0.13	11.1	0.2	1.2	1	0	0	1	1	1	0	NB-ARC	domain
SbcCD_C	PF13558.1	gi|55380242|ref|YP_138091.1|	-	0.1	12.5	3.5	2	8.4	2.4	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|55380242|ref|YP_138091.1|	-	0.13	11.9	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ABC_tran	PF00005.22	gi|55380243|ref|YP_138092.1|	-	8.2e-30	103.8	0.0	1.5e-29	103.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55380243|ref|YP_138092.1|	-	9.1e-13	48.8	0.2	1.2e-05	25.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|55380243|ref|YP_138092.1|	-	1e-06	28.2	0.0	1.9e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_29	PF13555.1	gi|55380243|ref|YP_138092.1|	-	2e-06	27.2	0.1	4.4e-06	26.1	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|55380243|ref|YP_138092.1|	-	5.1e-05	22.6	0.6	0.1	11.8	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|55380243|ref|YP_138092.1|	-	6.6e-05	23.3	1.4	9e-05	22.8	0.4	1.5	1	1	0	1	1	1	1	AAA	domain
MukB	PF04310.7	gi|55380243|ref|YP_138092.1|	-	0.04	13.2	0.1	0.061	12.6	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
AAA_10	PF12846.2	gi|55380243|ref|YP_138092.1|	-	0.08	12.3	0.5	11	5.3	0.0	2.4	2	1	0	2	2	2	0	AAA-like	domain
BPD_transp_2	PF02653.11	gi|55380244|ref|YP_138093.1|	-	2.7e-36	124.9	29.3	2.7e-36	124.9	20.3	2.0	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Cortexin	PF11057.3	gi|55380244|ref|YP_138093.1|	-	0.11	12.1	0.2	0.42	10.2	0.0	2.0	2	0	0	2	2	2	0	Cortexin	of	kidney
BPD_transp_2	PF02653.11	gi|55380245|ref|YP_138094.1|	-	1.8e-34	118.9	52.6	1.8e-34	118.9	36.5	2.4	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Aminotran_1_2	PF00155.16	gi|55380246|ref|YP_138095.1|	-	4.9e-60	203.4	0.0	5.5e-60	203.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|55380246|ref|YP_138095.1|	-	6e-14	51.8	0.0	9.3e-14	51.2	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|55380246|ref|YP_138095.1|	-	3.4e-07	29.6	0.0	7.6e-07	28.5	0.0	1.5	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|55380246|ref|YP_138095.1|	-	6.9e-07	27.8	0.0	1e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|55380246|ref|YP_138095.1|	-	7.3e-07	28.2	0.0	1.1e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Peripla_BP_6	PF13458.1	gi|55380247|ref|YP_138096.1|	-	5.1e-34	118.1	2.1	9.2e-34	117.3	1.5	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|55380247|ref|YP_138096.1|	-	1.7e-21	76.3	0.0	2.3e-21	75.9	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.4	gi|55380247|ref|YP_138096.1|	-	0.0066	16.3	1.0	0.0066	16.3	0.7	2.3	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TPP_enzyme_M	PF00205.17	gi|55380249|ref|YP_138098.1|	-	2.1e-35	121.4	0.7	6.5e-35	119.8	0.1	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_C	PF02775.16	gi|55380249|ref|YP_138098.1|	-	1.2e-32	112.6	1.7	2.7e-32	111.4	1.2	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.13	gi|55380249|ref|YP_138098.1|	-	1.6e-32	112.3	1.6	1e-31	109.7	0.0	2.7	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|55380249|ref|YP_138098.1|	-	0.094	11.6	0.1	0.17	10.7	0.1	1.4	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
Epimerase	PF01370.16	gi|55380250|ref|YP_138099.1|	-	7.9e-43	146.5	0.7	1e-42	146.2	0.5	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|55380250|ref|YP_138099.1|	-	5.9e-20	71.1	0.0	7.7e-20	70.7	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|55380250|ref|YP_138099.1|	-	3.5e-14	52.3	1.0	4.4e-14	52.0	0.7	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|55380250|ref|YP_138099.1|	-	4.6e-12	46.3	0.2	6.6e-12	45.8	0.1	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|55380250|ref|YP_138099.1|	-	1.5e-11	43.6	1.1	1.8e-09	36.9	0.7	2.2	1	1	0	1	1	1	1	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|55380250|ref|YP_138099.1|	-	6.8e-09	35.0	0.0	5.1e-08	32.1	0.0	2.0	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|55380250|ref|YP_138099.1|	-	4.9e-08	33.0	0.7	4.9e-08	33.0	0.5	1.7	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|55380250|ref|YP_138099.1|	-	1.2e-06	28.2	0.8	3.1e-06	26.9	0.5	1.7	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|55380250|ref|YP_138099.1|	-	3.9e-05	23.0	0.1	7.1e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	NmrA-like	family
UPF0146	PF03686.8	gi|55380250|ref|YP_138099.1|	-	0.12	12.2	0.1	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
NAD_binding_2	PF03446.10	gi|55380250|ref|YP_138099.1|	-	0.15	11.9	0.2	0.36	10.6	0.0	1.7	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Peptidase_M24	PF00557.19	gi|55380251|ref|YP_138100.1|	-	5.5e-25	88.1	0.0	8.8e-25	87.4	0.0	1.3	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|55380251|ref|YP_138100.1|	-	3.5e-05	24.3	0.0	6.8e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
RCC1_2	PF13540.1	gi|55380251|ref|YP_138100.1|	-	0.039	13.5	0.4	0.094	12.3	0.3	1.5	1	0	0	1	1	1	0	Regulator	of	chromosome	condensation	(RCC1)	repeat
DUF433	PF04255.9	gi|55380251|ref|YP_138100.1|	-	0.095	12.1	0.0	0.29	10.5	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF433)
Bac_luciferase	PF00296.15	gi|55380252|ref|YP_138101.1|	-	1.6e-60	204.8	0.8	1.9e-60	204.6	0.5	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
4HBT	PF03061.17	gi|55380253|ref|YP_138102.1|	-	1.2e-15	57.4	0.3	1.7e-15	56.8	0.2	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.1	gi|55380253|ref|YP_138102.1|	-	1.6e-07	31.3	0.0	2.4e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.1	gi|55380253|ref|YP_138102.1|	-	0.0093	15.7	0.1	0.011	15.5	0.1	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
AMP-binding	PF00501.23	gi|55380254|ref|YP_138103.1|	-	1.6e-81	273.8	0.0	2.1e-81	273.4	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|55380254|ref|YP_138103.1|	-	1.8e-15	57.6	0.3	3.7e-15	56.6	0.2	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
F420_oxidored	PF03807.12	gi|55380255|ref|YP_138104.1|	-	2.3e-19	69.6	0.8	4e-19	68.8	0.1	1.7	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|55380255|ref|YP_138104.1|	-	7.2e-06	25.8	0.0	1e-05	25.3	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_10	PF13460.1	gi|55380255|ref|YP_138104.1|	-	4e-05	23.6	0.4	7.4e-05	22.8	0.3	1.5	1	0	0	1	1	1	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|55380255|ref|YP_138104.1|	-	0.00023	20.2	0.1	0.00032	19.8	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Semialdhyde_dh	PF01118.19	gi|55380255|ref|YP_138104.1|	-	0.00054	20.2	0.6	0.0018	18.5	0.1	1.8	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|55380255|ref|YP_138104.1|	-	0.00093	19.1	3.1	0.0014	18.6	0.4	2.1	2	0	0	2	2	2	1	short	chain	dehydrogenase
PDH	PF02153.12	gi|55380255|ref|YP_138104.1|	-	0.0017	17.3	0.0	0.0028	16.5	0.0	1.3	1	0	0	1	1	1	1	Prephenate	dehydrogenase
NmrA	PF05368.8	gi|55380255|ref|YP_138104.1|	-	0.0069	15.6	0.1	0.011	15.0	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|55380255|ref|YP_138104.1|	-	0.0087	15.7	0.9	0.021	14.4	0.1	1.8	2	0	0	2	2	2	1	KR	domain
DapB_N	PF01113.15	gi|55380255|ref|YP_138104.1|	-	0.046	13.6	0.1	0.086	12.7	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
3HCDH_N	PF02737.13	gi|55380255|ref|YP_138104.1|	-	0.15	11.6	0.3	0.35	10.4	0.2	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Aldedh	PF00171.17	gi|55380256|ref|YP_138105.1|	-	5.7e-137	456.8	0.0	6.4e-137	456.6	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
EthD	PF07110.6	gi|55380257|ref|YP_138106.1|	-	3.6e-25	88.7	6.0	1.2e-11	45.3	0.2	3.6	2	2	0	2	2	2	2	EthD	domain
PG_binding_2	PF08823.6	gi|55380257|ref|YP_138106.1|	-	0.051	13.6	2.3	2	8.5	0.1	2.6	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
ABM	PF03992.11	gi|55380257|ref|YP_138106.1|	-	0.074	13.0	0.1	23	5.1	0.0	3.3	2	2	1	3	3	3	0	Antibiotic	biosynthesis	monooxygenase
PSII_Pbs27	PF13326.1	gi|55380257|ref|YP_138106.1|	-	0.13	12.1	0.0	14	5.6	0.0	2.2	2	0	0	2	2	2	0	Photosystem	II	Pbs27
HD	PF01966.17	gi|55380258|ref|YP_138107.1|	-	1.1e-10	41.5	0.1	1.5e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	HD	domain
IclR	PF01614.13	gi|55380259|ref|YP_138108.1|	-	2.6e-17	62.6	0.0	1.8e-16	60.0	0.0	2.1	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55380259|ref|YP_138108.1|	-	1.6e-15	56.3	0.4	1.4e-14	53.3	0.0	2.6	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380259|ref|YP_138108.1|	-	6.9e-08	31.7	0.0	1.9e-07	30.3	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55380259|ref|YP_138108.1|	-	3.1e-07	29.9	0.1	5.8e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|55380259|ref|YP_138108.1|	-	3.1e-07	30.1	0.0	1.6e-06	27.7	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55380259|ref|YP_138108.1|	-	1.1e-05	24.9	0.0	2.2e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|55380259|ref|YP_138108.1|	-	0.00011	21.8	0.1	0.00019	21.0	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|55380259|ref|YP_138108.1|	-	0.00035	20.1	0.0	0.00073	19.1	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.15	gi|55380259|ref|YP_138108.1|	-	0.00086	19.3	0.1	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|55380259|ref|YP_138108.1|	-	0.0013	18.6	0.1	0.0025	17.7	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|55380259|ref|YP_138108.1|	-	0.0018	17.7	0.0	0.0062	16.0	0.0	2.0	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
RPA_C	PF08784.6	gi|55380259|ref|YP_138108.1|	-	0.0024	18.2	0.0	0.015	15.7	0.0	2.1	2	0	0	2	2	2	1	Replication	protein	A	C	terminal
HTH_34	PF13601.1	gi|55380259|ref|YP_138108.1|	-	0.0029	17.5	0.0	0.006	16.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|55380259|ref|YP_138108.1|	-	0.0034	17.0	0.0	0.0063	16.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
LexA_DNA_bind	PF01726.11	gi|55380259|ref|YP_138108.1|	-	0.0055	16.2	0.0	0.015	14.8	0.0	1.7	1	0	0	1	1	1	1	LexA	DNA	binding	domain
DUF742	PF05331.6	gi|55380259|ref|YP_138108.1|	-	0.012	15.1	0.0	0.023	14.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
GntR	PF00392.16	gi|55380259|ref|YP_138108.1|	-	0.019	14.3	0.3	0.058	12.8	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.1	gi|55380259|ref|YP_138108.1|	-	0.033	13.7	0.0	0.12	11.9	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sulfolobus_pRN	PF05584.6	gi|55380259|ref|YP_138108.1|	-	0.036	14.0	0.0	0.09	12.7	0.0	1.7	2	0	0	2	2	1	0	Sulfolobus	plasmid	regulatory	protein
Sigma70_r4_2	PF08281.7	gi|55380259|ref|YP_138108.1|	-	0.051	13.0	0.2	0.28	10.6	0.0	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF336	PF03928.9	gi|55380259|ref|YP_138108.1|	-	0.057	13.2	0.2	0.59	9.9	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF336)
HTH_45	PF14947.1	gi|55380259|ref|YP_138108.1|	-	0.074	12.8	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_10	PF04967.7	gi|55380259|ref|YP_138108.1|	-	0.1	12.1	0.0	0.23	11.0	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|55380259|ref|YP_138108.1|	-	0.11	12.0	0.1	0.27	10.7	0.1	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF1441	PF07278.6	gi|55380259|ref|YP_138108.1|	-	0.12	12.0	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
HTH_40	PF14493.1	gi|55380259|ref|YP_138108.1|	-	0.12	12.5	0.0	0.34	11.1	0.0	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
ABC_tran	PF00005.22	gi|55380260|ref|YP_138109.1|	-	7.4e-32	110.5	0.0	1.3e-31	109.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55380260|ref|YP_138109.1|	-	1.6e-09	38.1	0.4	6.1e-08	32.9	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|55380260|ref|YP_138109.1|	-	0.00021	20.7	0.0	0.00071	19.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|55380260|ref|YP_138109.1|	-	0.00036	20.0	0.1	0.00062	19.2	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|55380260|ref|YP_138109.1|	-	0.0024	17.5	1.1	0.025	14.2	0.4	2.2	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|55380260|ref|YP_138109.1|	-	0.0025	17.9	0.2	0.27	11.3	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|55380260|ref|YP_138109.1|	-	0.0051	16.8	0.7	0.015	15.2	0.5	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|55380260|ref|YP_138109.1|	-	0.0056	15.5	0.4	0.0087	14.9	0.3	1.2	1	0	0	1	1	1	1	NB-ARC	domain
SMC_N	PF02463.14	gi|55380260|ref|YP_138109.1|	-	0.017	14.3	0.3	4.2	6.5	0.1	2.1	1	1	1	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
UPF0079	PF02367.12	gi|55380260|ref|YP_138109.1|	-	0.024	14.2	0.1	0.043	13.4	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
BCA_ABC_TP_C	PF12399.3	gi|55380260|ref|YP_138109.1|	-	0.026	14.1	0.1	0.059	13.0	0.1	1.6	1	0	0	1	1	1	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SRP54	PF00448.17	gi|55380260|ref|YP_138109.1|	-	0.028	13.8	0.3	0.044	13.2	0.2	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_10	PF12846.2	gi|55380260|ref|YP_138109.1|	-	0.037	13.4	0.1	2.9	7.2	0.1	2.2	2	0	0	2	2	2	0	AAA-like	domain
Zeta_toxin	PF06414.7	gi|55380260|ref|YP_138109.1|	-	0.046	12.8	0.0	0.09	11.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.7	gi|55380260|ref|YP_138109.1|	-	0.05	13.2	0.2	0.11	12.1	0.1	1.6	2	0	0	2	2	1	0	NACHT	domain
AAA	PF00004.24	gi|55380260|ref|YP_138109.1|	-	0.053	13.7	0.0	0.086	13.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ArgK	PF03308.11	gi|55380260|ref|YP_138109.1|	-	0.055	12.2	0.8	0.52	9.0	0.3	2.0	2	0	0	2	2	2	0	ArgK	protein
DUF258	PF03193.11	gi|55380260|ref|YP_138109.1|	-	0.068	12.3	0.1	0.1	11.8	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|55380260|ref|YP_138109.1|	-	0.082	12.8	0.2	1.7	8.6	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|55380260|ref|YP_138109.1|	-	0.086	13.1	0.2	0.21	11.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|55380260|ref|YP_138109.1|	-	0.089	13.2	0.0	0.16	12.4	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
AAA_30	PF13604.1	gi|55380260|ref|YP_138109.1|	-	0.12	11.8	1.3	0.28	10.7	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|55380260|ref|YP_138109.1|	-	0.15	11.0	0.0	0.23	10.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|55380261|ref|YP_138110.1|	-	1.3e-26	93.5	0.0	1.8e-26	93.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.3	gi|55380261|ref|YP_138110.1|	-	9.3e-10	37.9	0.2	1.9e-09	36.9	0.1	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.1	gi|55380261|ref|YP_138110.1|	-	0.00015	22.1	0.2	0.00022	21.6	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|55380261|ref|YP_138110.1|	-	0.00079	19.0	0.0	0.002	17.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.1	gi|55380261|ref|YP_138110.1|	-	0.00094	19.2	0.4	0.042	13.7	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|55380261|ref|YP_138110.1|	-	0.0065	15.9	0.1	0.011	15.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|55380261|ref|YP_138110.1|	-	0.0096	15.8	0.1	0.017	14.9	0.1	1.4	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
Zeta_toxin	PF06414.7	gi|55380261|ref|YP_138110.1|	-	0.015	14.3	0.0	0.026	13.6	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
SMC_N	PF02463.14	gi|55380261|ref|YP_138110.1|	-	0.035	13.3	0.1	0.045	12.9	0.0	1.3	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.24	gi|55380261|ref|YP_138110.1|	-	0.078	13.1	0.2	0.21	11.7	0.0	1.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DSRB	PF10781.4	gi|55380261|ref|YP_138110.1|	-	0.19	11.2	0.8	12	5.4	0.0	3.0	3	0	0	3	3	3	0	Dextransucrase	DSRB
BPD_transp_2	PF02653.11	gi|55380262|ref|YP_138111.1|	-	8.6e-79	264.2	80.0	9.9e-46	155.8	26.3	2.2	2	0	0	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
Coa1	PF08695.5	gi|55380262|ref|YP_138111.1|	-	0.12	11.9	1.1	0.86	9.1	0.0	2.7	3	0	0	3	3	3	0	Cytochrome	oxidase	complex	assembly	protein	1
Peripla_BP_6	PF13458.1	gi|55380263|ref|YP_138112.1|	-	6.5e-64	216.4	11.4	8.5e-64	216.0	7.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|55380263|ref|YP_138112.1|	-	3.1e-36	124.8	0.4	3.7e-36	124.6	0.3	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.23	gi|55380263|ref|YP_138112.1|	-	2.4e-21	75.9	2.4	3.9e-21	75.2	1.7	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.4	gi|55380263|ref|YP_138112.1|	-	0.005	16.7	5.0	0.005	16.7	3.5	2.5	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Tail_tube	PF10618.4	gi|55380263|ref|YP_138112.1|	-	0.021	14.5	0.2	0.043	13.5	0.1	1.5	1	0	0	1	1	1	0	Phage	tail	tube	protein
Glyco_tran_WecB	PF03808.8	gi|55380263|ref|YP_138112.1|	-	0.12	11.7	0.0	0.23	10.8	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	WecB/TagA/CpsF	family
UCR_Fe-S_N	PF10399.4	gi|55380263|ref|YP_138112.1|	-	1.9	7.7	5.4	0.47	9.6	0.7	2.2	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Penicil_amidase	PF01804.13	gi|55380264|ref|YP_138113.1|	-	2.9e-82	277.9	6.5	3.8e-82	277.5	4.5	1.1	1	0	0	1	1	1	1	Penicillin	amidase
Penicil_amidase	PF01804.13	gi|55380265|ref|YP_138114.1|	-	2.6e-34	119.3	2.3	3e-34	119.1	1.6	1.0	1	0	0	1	1	1	1	Penicillin	amidase
TAT_signal	PF10518.4	gi|55380265|ref|YP_138114.1|	-	0.00014	21.6	1.3	0.00014	21.6	0.9	2.4	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HBS1_N	PF08938.5	gi|55380265|ref|YP_138114.1|	-	0.039	14.0	0.0	0.059	13.5	0.0	1.4	1	0	0	1	1	1	0	HBS1	N-terminus
AMP-binding_C_2	PF14535.1	gi|55380266|ref|YP_138115.1|	-	1e-21	76.7	0.0	1.8e-21	75.9	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.23	gi|55380266|ref|YP_138115.1|	-	3.4e-13	48.7	0.8	5.9e-13	47.9	0.6	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
LuxE	PF04443.7	gi|55380266|ref|YP_138115.1|	-	0.00024	19.9	0.0	0.0011	17.7	0.0	1.8	2	0	0	2	2	2	1	Acyl-protein	synthetase,	LuxE
GH3	PF03321.8	gi|55380266|ref|YP_138115.1|	-	0.014	13.9	0.0	0.11	10.9	0.0	2.1	2	0	0	2	2	2	0	GH3	auxin-responsive	promoter
DUF4473	PF14747.1	gi|55380266|ref|YP_138115.1|	-	0.17	12.1	0.0	0.45	10.7	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4473)
Glyoxalase_4	PF13669.1	gi|55380267|ref|YP_138116.1|	-	6.7e-15	55.0	0.0	8.5e-15	54.7	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|55380267|ref|YP_138116.1|	-	0.00029	20.7	0.0	0.0017	18.2	0.0	1.9	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.2	gi|55380267|ref|YP_138116.1|	-	0.0011	19.5	0.1	0.0018	18.8	0.1	1.5	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|55380267|ref|YP_138116.1|	-	0.0011	18.9	0.0	0.0014	18.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF2840	PF11000.3	gi|55380267|ref|YP_138116.1|	-	0.096	12.2	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2840)
EthD	PF07110.6	gi|55380269|ref|YP_138117.1|	-	1.2e-14	54.9	4.5	4e-14	53.3	3.1	1.7	1	1	0	1	1	1	1	EthD	domain
MmlI	PF09448.5	gi|55380269|ref|YP_138117.1|	-	0.004	16.8	0.1	0.006	16.3	0.0	1.3	1	1	0	1	1	1	1	Methylmuconolactone	methyl-isomerase
Dabb	PF07876.7	gi|55380269|ref|YP_138117.1|	-	0.0073	16.7	0.0	0.0086	16.4	0.0	1.2	1	0	0	1	1	1	1	Stress	responsive	A/B	Barrel	Domain
IclR	PF01614.13	gi|55380268|ref|YP_138118.1|	-	1.3e-27	96.0	0.0	3.1e-27	94.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55380268|ref|YP_138118.1|	-	1.4e-10	40.6	0.0	2.9e-10	39.5	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|55380268|ref|YP_138118.1|	-	0.0006	19.2	0.1	0.0014	18.0	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|55380268|ref|YP_138118.1|	-	0.0015	18.2	0.1	0.0039	16.9	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380268|ref|YP_138118.1|	-	0.0037	16.6	0.0	0.012	14.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55380268|ref|YP_138118.1|	-	0.0056	16.3	0.1	0.013	15.1	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.7	gi|55380268|ref|YP_138118.1|	-	0.0099	15.5	0.0	0.057	13.0	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.2	gi|55380268|ref|YP_138118.1|	-	0.022	14.4	0.0	0.084	12.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
SpoIIID	PF12116.3	gi|55380268|ref|YP_138118.1|	-	0.03	14.2	0.1	0.077	12.9	0.1	1.6	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
MarR	PF01047.17	gi|55380268|ref|YP_138118.1|	-	0.031	13.9	0.1	0.071	12.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.1	gi|55380268|ref|YP_138118.1|	-	0.062	13.1	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Surf_Ag_VNR	PF07244.10	gi|55380268|ref|YP_138118.1|	-	0.11	12.9	0.0	0.33	11.3	0.0	1.8	2	0	0	2	2	2	0	Surface	antigen	variable	number	repeat
ECH	PF00378.15	gi|55380270|ref|YP_138119.1|	-	9.3e-66	221.4	0.0	1.1e-65	221.1	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
ECH_C	PF13766.1	gi|55380270|ref|YP_138119.1|	-	2.2e-07	31.0	0.1	1.6e-06	28.2	0.0	2.0	2	0	0	2	2	2	1	2-enoyl-CoA	Hydratase	C-terminal	region
3HCDH_N	PF02737.13	gi|55380271|ref|YP_138120.1|	-	3.5e-61	205.9	5.7	4.9e-61	205.5	4.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|55380271|ref|YP_138120.1|	-	7e-32	109.6	0.1	3.5e-31	107.4	0.0	2.1	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|55380271|ref|YP_138120.1|	-	9.1e-09	35.2	0.4	1.5e-08	34.5	0.3	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.9	gi|55380271|ref|YP_138120.1|	-	3.1e-05	23.4	0.6	5.1e-05	22.7	0.4	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|55380271|ref|YP_138120.1|	-	8.9e-05	22.3	3.3	8.9e-05	22.3	2.3	2.0	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|55380271|ref|YP_138120.1|	-	0.0061	16.9	8.5	0.015	15.6	3.3	2.6	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Malic_M	PF03949.10	gi|55380271|ref|YP_138120.1|	-	0.033	13.7	0.9	0.046	13.2	0.6	1.2	1	0	0	1	1	1	0	Malic	enzyme,	NAD	binding	domain
MORN	PF02493.15	gi|55380271|ref|YP_138120.1|	-	0.039	13.6	0.1	0.097	12.4	0.1	1.7	1	0	0	1	1	1	0	MORN	repeat
NmrA	PF05368.8	gi|55380271|ref|YP_138120.1|	-	0.04	13.1	0.5	0.062	12.5	0.3	1.3	1	0	0	1	1	1	0	NmrA-like	family
ApbA	PF02558.11	gi|55380271|ref|YP_138120.1|	-	0.078	12.4	0.1	0.13	11.7	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Aldolase	PF01081.14	gi|55380271|ref|YP_138120.1|	-	0.67	9.0	3.4	2.5	7.1	0.1	2.2	2	0	0	2	2	2	0	KDPG	and	KHG	aldolase
Thiolase_N	PF00108.18	gi|55380272|ref|YP_138121.1|	-	7.6e-64	215.2	0.7	9.5e-63	211.6	0.5	2.2	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|55380272|ref|YP_138121.1|	-	1.4e-48	163.4	0.2	2.4e-48	162.6	0.1	1.4	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III_C	PF08541.5	gi|55380272|ref|YP_138121.1|	-	0.00016	21.6	0.2	0.00041	20.2	0.1	1.8	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF35_N	PF12172.3	gi|55380273|ref|YP_138122.1|	-	1.1e-08	34.6	3.6	4.8e-08	32.6	2.1	2.3	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|55380273|ref|YP_138122.1|	-	6.1e-07	29.5	0.6	1.5e-06	28.3	0.4	1.7	1	0	0	1	1	1	1	DUF35	OB-fold	domain
Thiolase_N	PF00108.18	gi|55380274|ref|YP_138123.1|	-	2.9e-11	42.8	0.6	6.6e-11	41.6	0.1	1.8	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|55380274|ref|YP_138123.1|	-	7.9e-10	38.2	0.4	2.3e-09	36.7	0.0	2.0	2	1	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|55380274|ref|YP_138123.1|	-	8.2e-08	32.0	3.3	1.6e-07	31.1	2.3	1.4	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|55380274|ref|YP_138123.1|	-	0.017	14.7	1.0	0.1	12.2	0.2	2.4	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
AMP-binding_C_2	PF14535.1	gi|55380275|ref|YP_138124.1|	-	9.4e-21	73.6	0.0	2e-20	72.6	0.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.23	gi|55380275|ref|YP_138124.1|	-	4e-20	71.5	0.2	7e-20	70.7	0.1	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
LuxE	PF04443.7	gi|55380275|ref|YP_138124.1|	-	2e-06	26.7	0.0	0.00034	19.3	0.0	2.1	2	0	0	2	2	2	2	Acyl-protein	synthetase,	LuxE
GH3	PF03321.8	gi|55380275|ref|YP_138124.1|	-	0.001	17.6	0.0	0.011	14.2	0.0	2.1	2	0	0	2	2	2	1	GH3	auxin-responsive	promoter
4HBT	PF03061.17	gi|55380276|ref|YP_138125.1|	-	5.3e-16	58.5	0.3	9.6e-16	57.6	0.2	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.1	gi|55380276|ref|YP_138125.1|	-	8.5e-09	35.4	0.1	1.1e-08	35.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.1	gi|55380276|ref|YP_138125.1|	-	0.012	15.4	0.3	0.014	15.1	0.2	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
PS-DH	PF14765.1	gi|55380276|ref|YP_138125.1|	-	0.047	12.8	0.1	0.051	12.7	0.0	1.1	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
MaoC_dehydratas	PF01575.14	gi|55380277|ref|YP_138126.1|	-	2.7e-16	59.0	0.1	3.2e-16	58.8	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|55380277|ref|YP_138126.1|	-	0.00025	20.8	0.7	0.00076	19.2	0.5	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Aldedh	PF00171.17	gi|55380278|ref|YP_138127.1|	-	4.2e-173	575.9	3.8	4.7e-173	575.7	2.6	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
RuBisCO_large_N	PF02788.11	gi|55380278|ref|YP_138127.1|	-	0.23	11.1	0.1	0.23	11.1	0.0	1.9	2	0	0	2	2	2	0	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
Lar_restr_allev	PF14354.1	gi|55380279|ref|YP_138128.1|	-	0.019	15.2	3.6	0.024	14.9	2.5	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|55380279|ref|YP_138128.1|	-	0.028	13.7	0.6	0.028	13.7	0.4	1.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-H2C2_2	PF13465.1	gi|55380279|ref|YP_138128.1|	-	0.051	13.8	4.8	4	7.8	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-CHCC	PF10276.4	gi|55380279|ref|YP_138128.1|	-	0.099	12.5	0.5	0.099	12.5	0.3	2.0	2	1	0	2	2	2	0	Zinc-finger	domain
Zn-ribbon_8	PF09723.5	gi|55380279|ref|YP_138128.1|	-	0.11	12.4	0.2	0.11	12.4	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|55380279|ref|YP_138128.1|	-	0.14	12.2	4.4	0.63	10.0	0.2	2.2	2	0	0	2	2	2	0	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|55380279|ref|YP_138128.1|	-	0.16	11.6	6.3	0.21	11.2	4.4	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-MYND	PF01753.13	gi|55380279|ref|YP_138128.1|	-	0.19	11.6	5.1	0.41	10.5	3.5	1.6	1	1	0	1	1	1	0	MYND	finger
Nudix_N_2	PF14803.1	gi|55380279|ref|YP_138128.1|	-	0.61	9.8	7.1	6.2	6.6	2.8	2.6	1	1	0	1	1	1	0	Nudix	N-terminal
zf-C3HC4_2	PF13923.1	gi|55380279|ref|YP_138128.1|	-	0.64	10.1	6.2	24	5.0	5.3	2.1	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ISL3	PF14690.1	gi|55380279|ref|YP_138128.1|	-	0.77	9.8	6.5	0.49	10.4	2.9	1.8	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn_Tnp_IS1	PF03811.8	gi|55380279|ref|YP_138128.1|	-	1.4	8.4	8.8	2.3	7.8	6.1	1.4	1	1	0	1	1	1	0	InsA	N-terminal	domain
Prim_Zn_Ribbon	PF08273.7	gi|55380279|ref|YP_138128.1|	-	1.6	8.9	8.1	2.7	8.1	5.6	1.5	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Arc_trans_TRASH	PF08394.5	gi|55380279|ref|YP_138128.1|	-	2.5	8.3	7.0	3.9	7.6	1.1	2.2	2	0	0	2	2	2	0	Archaeal	TRASH	domain
zf-C2H2	PF00096.21	gi|55380279|ref|YP_138128.1|	-	2.8	8.4	5.7	17	6.0	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-TFIIB	PF13453.1	gi|55380279|ref|YP_138128.1|	-	3	7.1	6.0	4.9	6.4	4.2	1.4	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.2	gi|55380279|ref|YP_138128.1|	-	3	7.7	9.1	6.5	6.6	6.3	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|55380279|ref|YP_138128.1|	-	3	7.8	8.7	0.43	10.5	0.7	2.4	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.1	gi|55380279|ref|YP_138128.1|	-	4	7.9	7.4	6.2	7.3	0.8	2.4	2	1	0	2	2	2	0	C2H2-type	zinc	finger
DUF59	PF01883.14	gi|55380280|ref|YP_138129.1|	-	4.3e-21	74.6	0.1	6.2e-21	74.1	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
PaaA_PaaC	PF05138.7	gi|55380281|ref|YP_138130.1|	-	1.5e-59	201.1	1.4	2e-59	200.7	0.9	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
MiaE_2	PF13794.1	gi|55380281|ref|YP_138130.1|	-	0.0033	16.9	0.4	0.0083	15.6	0.3	1.8	1	1	0	1	1	1	1	tRNA-(MS[2]IO[6]A)-hydroxylase	(MiaE)-like
PaaB	PF06243.6	gi|55380282|ref|YP_138131.1|	-	7.3e-43	144.6	5.6	1.5e-24	85.9	0.5	2.0	1	1	1	2	2	2	2	Phenylacetic	acid	degradation	B
Prok-JAB	PF14464.1	gi|55380282|ref|YP_138131.1|	-	0.11	12.1	1.2	0.18	11.3	0.5	1.8	1	1	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
IF-2	PF11987.3	gi|55380282|ref|YP_138131.1|	-	0.12	12.2	0.6	0.35	10.7	0.4	1.7	1	1	1	2	2	2	0	Translation-initiation	factor	2
SPT2	PF08243.6	gi|55380282|ref|YP_138131.1|	-	0.18	12.0	1.3	7	6.9	0.0	2.6	3	0	0	3	3	3	0	SPT2	chromatin	protein
PaaA_PaaC	PF05138.7	gi|55380284|ref|YP_138132.1|	-	6.1e-71	238.4	0.2	7.9e-71	238.0	0.2	1.1	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
HTH_10	PF04967.7	gi|55380283|ref|YP_138133.1|	-	3.3e-16	58.6	0.0	5.5e-16	57.8	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|55380283|ref|YP_138133.1|	-	0.1	12.1	0.0	0.24	10.9	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55380283|ref|YP_138133.1|	-	0.11	12.1	0.0	0.39	10.4	0.0	1.9	2	1	0	2	2	2	0	MarR	family
ECH	PF00378.15	gi|55380285|ref|YP_138134.1|	-	1.7e-49	168.1	0.1	2e-49	167.9	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Amidohydro_2	PF04909.9	gi|55380286|ref|YP_138135.1|	-	1.8e-49	168.7	0.2	2.2e-49	168.4	0.2	1.0	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.16	gi|55380286|ref|YP_138135.1|	-	0.076	12.2	0.0	0.25	10.5	0.0	1.8	2	0	0	2	2	2	0	TatD	related	DNase
HpcH_HpaI	PF03328.9	gi|55380287|ref|YP_138136.1|	-	2.2e-55	186.9	1.2	3e-55	186.5	0.8	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.1	gi|55380287|ref|YP_138136.1|	-	9.8e-14	50.9	0.0	2.9e-08	32.9	0.0	2.1	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
Methyltransf_11	PF08241.7	gi|55380288|ref|YP_138137.1|	-	3.9e-16	59.3	0.0	8e-16	58.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55380288|ref|YP_138137.1|	-	6.5e-09	35.5	0.0	9.8e-09	34.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55380288|ref|YP_138137.1|	-	3.6e-08	33.7	0.0	8.8e-08	32.4	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55380288|ref|YP_138137.1|	-	1e-07	31.8	0.0	1.3e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|55380288|ref|YP_138137.1|	-	2.3e-06	28.0	0.0	1.5e-05	25.3	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55380288|ref|YP_138137.1|	-	5.7e-06	26.8	0.1	3.6e-05	24.2	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|55380288|ref|YP_138137.1|	-	0.00027	20.1	0.0	0.00058	19.0	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|55380288|ref|YP_138137.1|	-	0.00028	20.8	0.8	0.0012	18.8	0.6	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|55380288|ref|YP_138137.1|	-	0.00068	19.3	0.0	0.00092	18.9	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
RrnaAD	PF00398.15	gi|55380288|ref|YP_138137.1|	-	0.013	14.5	0.0	0.02	13.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DREV	PF05219.7	gi|55380288|ref|YP_138137.1|	-	0.032	13.1	0.0	0.047	12.5	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
MaoC_dehydratas	PF01575.14	gi|55380289|ref|YP_138138.1|	-	6e-24	83.7	0.1	8e-24	83.3	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|55380289|ref|YP_138138.1|	-	0.00026	20.7	0.3	0.00076	19.2	0.2	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Carboxyl_trans	PF01039.17	gi|55380290|ref|YP_138139.1|	-	1.2e-133	446.1	0.0	1.4e-133	445.8	0.0	1.1	1	0	0	1	1	1	1	Carboxyl	transferase	domain
CPSase_L_D2	PF02786.12	gi|55380291|ref|YP_138140.1|	-	2e-75	252.7	0.2	2e-75	252.7	0.2	2.0	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|55380291|ref|YP_138140.1|	-	4.5e-41	139.4	0.1	1.4e-40	137.8	0.0	1.9	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Biotin_carb_C	PF02785.14	gi|55380291|ref|YP_138140.1|	-	3e-36	123.6	0.0	7.9e-36	122.2	0.0	1.8	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.17	gi|55380291|ref|YP_138140.1|	-	9.8e-17	60.3	5.0	2.6e-16	59.0	3.1	2.1	2	0	0	2	2	2	1	Biotin-requiring	enzyme
ATP-grasp_4	PF13535.1	gi|55380291|ref|YP_138140.1|	-	9.9e-17	61.2	0.3	2.3e-16	60.0	0.2	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|55380291|ref|YP_138140.1|	-	4e-14	52.1	0.0	1.2e-13	50.5	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|55380291|ref|YP_138140.1|	-	2.3e-09	36.9	0.0	4.4e-09	36.0	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.17	gi|55380291|ref|YP_138140.1|	-	5.2e-09	35.6	0.2	1.1e-08	34.6	0.1	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Biotin_lipoyl_2	PF13533.1	gi|55380291|ref|YP_138140.1|	-	2.2e-07	30.4	0.3	0.0054	16.3	0.1	3.0	1	1	1	2	2	2	2	Biotin-lipoyl	like
GARS_A	PF01071.14	gi|55380291|ref|YP_138140.1|	-	7.2e-05	22.4	0.1	7.2e-05	22.4	0.1	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_3	PF02655.9	gi|55380291|ref|YP_138140.1|	-	0.00022	21.1	0.0	0.00036	20.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.6	gi|55380291|ref|YP_138140.1|	-	0.0024	17.3	0.0	0.62	9.5	0.0	2.1	2	0	0	2	2	2	2	RimK-like	ATP-grasp	domain
HlyD_3	PF13437.1	gi|55380291|ref|YP_138140.1|	-	0.014	15.6	0.7	6.7	7.1	0.0	2.9	2	0	0	2	2	2	0	HlyD	family	secretion	protein
HlyD	PF00529.15	gi|55380291|ref|YP_138140.1|	-	0.02	14.1	0.5	0.16	11.2	0.1	2.2	1	1	1	2	2	2	0	HlyD	family	secretion	protein
Acyl-CoA_dh_1	PF00441.19	gi|55380292|ref|YP_138141.1|	-	9.7e-30	103.6	0.5	1.6e-29	102.9	0.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|55380292|ref|YP_138141.1|	-	1.2e-22	80.6	2.6	2.3e-22	79.6	1.8	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|55380292|ref|YP_138141.1|	-	1.4e-17	62.8	1.8	1.5e-17	62.7	0.2	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|55380292|ref|YP_138141.1|	-	1e-14	54.9	1.3	1.9e-14	54.0	0.9	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.23	gi|55380293|ref|YP_138142.1|	-	2.8e-88	296.1	0.0	3.5e-88	295.7	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|55380293|ref|YP_138142.1|	-	5.3e-18	65.7	1.2	5.3e-18	65.7	0.8	2.1	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
UbiD	PF01977.11	gi|55380294|ref|YP_138143.1|	-	4.2e-13	48.5	0.8	1.6e-12	46.6	0.5	1.7	1	1	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
UbiD	PF01977.11	gi|55380295|ref|YP_138144.1|	-	2.3e-101	339.2	0.0	2.8e-101	338.9	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
MDMPI_N	PF11716.3	gi|55380296|ref|YP_138145.1|	-	0.018	15.4	5.7	0.055	13.8	1.5	2.1	2	0	0	2	2	2	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
HTH_10	PF04967.7	gi|55380297|ref|YP_138146.1|	-	7.8e-16	57.3	0.2	2.2e-15	55.9	0.0	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_30	PF13556.1	gi|55380297|ref|YP_138146.1|	-	7.7e-05	22.1	0.1	0.00032	20.2	0.1	2.1	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55380297|ref|YP_138146.1|	-	0.0014	18.2	0.0	0.0067	16.0	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_8	PF02954.14	gi|55380297|ref|YP_138146.1|	-	0.0037	16.7	0.1	0.011	15.2	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_20	PF12840.2	gi|55380297|ref|YP_138146.1|	-	0.0087	15.8	0.2	0.088	12.6	0.1	2.7	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55380297|ref|YP_138146.1|	-	0.016	14.5	0.0	0.039	13.3	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_psq	PF05225.11	gi|55380297|ref|YP_138146.1|	-	0.023	14.2	0.6	0.11	12.0	0.0	2.2	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
DUF1150	PF06620.6	gi|55380297|ref|YP_138146.1|	-	0.028	14.2	2.3	0.32	10.8	0.3	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1150)
HTH_1	PF00126.22	gi|55380297|ref|YP_138146.1|	-	0.41	10.4	2.4	1.1	9.0	0.0	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
E1-E2_ATPase	PF00122.15	gi|55380298|ref|YP_138147.1|	-	5.2e-59	199.0	0.4	9.5e-59	198.2	0.3	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55380298|ref|YP_138147.1|	-	3.3e-46	158.4	5.9	3.3e-46	158.4	4.1	2.5	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|55380298|ref|YP_138147.1|	-	2.1e-14	54.1	1.0	1.7e-13	51.1	0.7	2.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55380298|ref|YP_138147.1|	-	3.5e-14	52.7	0.3	1.8e-13	50.4	0.0	2.4	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|55380298|ref|YP_138147.1|	-	0.0028	17.2	0.9	0.017	14.7	0.3	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DUF4010	PF13194.1	gi|55380299|ref|YP_138148.1|	-	5.1e-67	225.2	17.7	5.1e-67	225.2	12.2	2.6	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.11	gi|55380299|ref|YP_138148.1|	-	5.2e-08	32.8	9.4	5.2e-08	32.8	6.5	4.0	4	2	0	4	4	4	1	MgtC	family
ABC1	PF03109.11	gi|55380300|ref|YP_138149.1|	-	2.3e-19	69.5	0.0	4.9e-19	68.4	0.0	1.6	1	0	0	1	1	1	1	ABC1	family
APH	PF01636.18	gi|55380300|ref|YP_138149.1|	-	0.025	14.3	8.2	0.033	13.9	1.3	3.5	1	1	2	3	3	3	0	Phosphotransferase	enzyme	family
Reoviridae_Vp9	PF08978.5	gi|55380301|ref|YP_138150.1|	-	0.46	9.3	2.8	0.75	8.7	1.9	1.3	1	0	0	1	1	1	0	Reoviridae	VP9
ORC6	PF05460.8	gi|55380301|ref|YP_138150.1|	-	6	5.8	8.0	7.3	5.5	5.6	1.2	1	0	0	1	1	1	0	Origin	recognition	complex	subunit	6	(ORC6)
TAT_signal	PF10518.4	gi|55380302|ref|YP_138151.1|	-	0.077	13.0	0.9	0.077	13.0	0.6	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MAGE_N	PF12440.3	gi|55380302|ref|YP_138151.1|	-	0.26	11.5	4.1	0.15	12.3	1.2	1.7	1	1	1	2	2	2	0	Melanoma	associated	antigen	family	N	terminal
DUF515	PF04415.7	gi|55380302|ref|YP_138151.1|	-	0.36	9.0	1.5	0.41	8.8	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
Peripla_BP_2	PF01497.13	gi|55380303|ref|YP_138152.1|	-	8.8e-20	70.8	0.0	1.2e-19	70.3	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Thioredoxin	PF00085.15	gi|55380304|ref|YP_138153.1|	-	1.3e-25	89.0	0.0	1.6e-25	88.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|55380304|ref|YP_138153.1|	-	1.3e-10	41.4	0.1	1.4e-09	38.0	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|55380304|ref|YP_138153.1|	-	1.5e-06	28.1	0.0	0.00064	19.7	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|55380304|ref|YP_138153.1|	-	1.7e-06	27.7	0.0	2.6e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.1	gi|55380304|ref|YP_138153.1|	-	2.3e-05	23.9	0.0	2.7e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.9	gi|55380304|ref|YP_138153.1|	-	0.0001	22.4	0.0	0.00015	21.9	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_7	PF13899.1	gi|55380304|ref|YP_138153.1|	-	0.00015	21.7	0.1	0.00034	20.5	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
DSBA	PF01323.15	gi|55380304|ref|YP_138153.1|	-	0.00034	20.2	1.1	0.0061	16.1	0.0	2.4	2	1	1	3	3	3	1	DSBA-like	thioredoxin	domain
HyaE	PF07449.6	gi|55380304|ref|YP_138153.1|	-	0.00088	19.1	0.0	0.0018	18.1	0.0	1.5	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
TraF	PF13728.1	gi|55380304|ref|YP_138153.1|	-	0.0021	17.6	0.0	0.003	17.0	0.0	1.3	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Redoxin	PF08534.5	gi|55380304|ref|YP_138153.1|	-	0.0036	16.8	0.1	0.096	12.2	0.0	2.1	1	1	1	2	2	2	1	Redoxin
AhpC-TSA	PF00578.16	gi|55380304|ref|YP_138153.1|	-	0.01	15.4	0.1	0.36	10.5	0.0	2.2	1	1	1	2	2	2	0	AhpC/TSA	family
Glutaredoxin	PF00462.19	gi|55380304|ref|YP_138153.1|	-	0.026	14.5	0.0	0.05	13.5	0.0	1.6	1	0	0	1	1	1	0	Glutaredoxin
Thioredoxin_4	PF13462.1	gi|55380304|ref|YP_138153.1|	-	0.093	12.7	0.0	0.56	10.2	0.0	1.9	1	1	1	2	2	2	0	Thioredoxin
TrbC_Ftype	PF09673.5	gi|55380304|ref|YP_138153.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
DUF953	PF06110.6	gi|55380304|ref|YP_138153.1|	-	0.14	11.5	0.5	2.1	7.8	0.3	2.2	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
DUF2892	PF11127.3	gi|55380305|ref|YP_138154.1|	-	2.1e-17	62.6	2.4	2.5e-17	62.4	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF3040	PF11239.3	gi|55380305|ref|YP_138154.1|	-	1.2	9.2	5.2	1.2	9.2	3.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Oleosin	PF01277.12	gi|55380305|ref|YP_138154.1|	-	3.2	7.3	7.2	3.9	7.0	5.0	1.1	1	0	0	1	1	1	0	Oleosin
Sigma54_AID	PF00309.15	gi|55380306|ref|YP_138155.1|	-	0.055	12.9	0.5	0.094	12.2	0.3	1.4	1	0	0	1	1	1	0	Sigma-54	factor,	Activator	interacting	domain	(AID)
Exotox-A_bind	PF09101.5	gi|55380306|ref|YP_138155.1|	-	0.15	11.1	0.0	0.21	10.6	0.0	1.1	1	0	0	1	1	1	0	Exotoxin	A	binding
Pyr_redox_2	PF07992.9	gi|55380307|ref|YP_138156.1|	-	8.7e-17	61.6	0.0	1.3e-16	61.1	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|55380307|ref|YP_138156.1|	-	2.9e-05	23.9	0.4	0.037	13.7	0.0	2.6	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|55380307|ref|YP_138156.1|	-	0.064	13.6	0.5	5.2	7.5	0.2	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|55380307|ref|YP_138156.1|	-	0.098	12.3	0.2	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.14	gi|55380307|ref|YP_138156.1|	-	0.6	9.0	2.8	4.7	6.1	0.1	2.1	2	0	0	2	2	2	0	FAD	binding	domain
TusA	PF01206.12	gi|55380308|ref|YP_138157.1|	-	1e-15	57.0	0.0	1.2e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
GATase	PF00117.23	gi|55380309|ref|YP_138158.1|	-	5.6e-22	78.1	0.0	6.6e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|55380309|ref|YP_138158.1|	-	8.8e-05	22.0	0.2	0.0013	18.1	0.2	2.6	1	1	0	1	1	1	1	Peptidase	C26
GATase_3	PF07685.9	gi|55380309|ref|YP_138158.1|	-	0.00027	20.5	0.0	0.00047	19.7	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
HTS	PF04204.11	gi|55380309|ref|YP_138158.1|	-	0.013	14.2	0.0	0.027	13.1	0.0	1.5	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
DrsE_2	PF13686.1	gi|55380310|ref|YP_138159.1|	-	2.6e-52	176.5	0.4	3.2e-52	176.2	0.2	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|55380310|ref|YP_138159.1|	-	5.2e-06	26.5	0.4	0.00011	22.1	0.1	2.4	2	1	0	2	2	2	1	DsrE/DsrF-like	family
Packaging_FI	PF14000.1	gi|55380310|ref|YP_138159.1|	-	0.0011	19.1	0.0	0.002	18.3	0.0	1.4	1	0	0	1	1	1	1	DNA	packaging	protein	FI
HSBP1	PF06825.7	gi|55380310|ref|YP_138159.1|	-	2.2	7.9	7.4	0.69	9.5	0.7	2.4	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
TusA	PF01206.12	gi|55380311|ref|YP_138160.1|	-	5.3e-21	73.9	0.0	6e-21	73.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|55380311|ref|YP_138160.1|	-	0.0058	16.1	0.0	0.011	15.2	0.0	1.4	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
Lactamase_B	PF00753.22	gi|55380312|ref|YP_138161.1|	-	1.3e-21	77.1	5.4	1.9e-21	76.5	3.8	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|55380312|ref|YP_138161.1|	-	5.7e-12	45.9	0.0	1e-11	45.1	0.0	1.3	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|55380312|ref|YP_138161.1|	-	0.00048	19.7	0.0	0.00084	18.9	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF4341	PF14241.1	gi|55380313|ref|YP_138162.1|	-	2.3e-13	49.5	4.8	2.3e-13	49.5	3.3	2.8	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4341)
Sulf_transp	PF04143.9	gi|55380313|ref|YP_138162.1|	-	1.9e-09	37.3	9.9	1.9e-09	37.3	6.9	3.1	3	1	0	3	3	3	1	Sulphur	transport
Sulf_transp	PF04143.9	gi|55380314|ref|YP_138163.1|	-	2.9e-10	40.0	10.3	2.9e-10	40.0	7.1	3.1	3	0	0	3	3	3	2	Sulphur	transport
DUF204	PF02659.10	gi|55380314|ref|YP_138163.1|	-	0.0035	17.4	2.3	0.0035	17.4	1.6	2.4	2	2	0	2	2	2	1	Domain	of	unknown	function	DUF
QCR10	PF09796.4	gi|55380314|ref|YP_138163.1|	-	0.47	10.1	6.9	0.072	12.7	1.7	2.0	2	1	0	2	2	2	0	Ubiquinol-cytochrome-c	reductase	complex	subunit	(QCR10)
PHO4	PF01384.15	gi|55380315|ref|YP_138164.1|	-	1.5e-43	148.6	33.3	2e-43	148.2	23.1	1.1	1	0	0	1	1	1	1	Phosphate	transporter	family
Usp	PF00582.21	gi|55380316|ref|YP_138165.1|	-	9.7e-37	126.2	0.3	4.4e-20	72.2	0.1	2.2	2	0	0	2	2	2	2	Universal	stress	protein	family
MAAL_C	PF07476.6	gi|55380316|ref|YP_138165.1|	-	0.016	14.1	0.0	0.022	13.7	0.0	1.1	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
TauE	PF01925.14	gi|55380318|ref|YP_138167.1|	-	3.3e-35	121.6	33.7	3.3e-35	121.6	23.3	1.6	2	0	0	2	2	2	1	Sulfite	exporter	TauE/SafE
HATPase_c	PF02518.21	gi|55380319|ref|YP_138168.1|	-	2.8e-18	65.6	0.4	7.7e-18	64.2	0.1	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|55380319|ref|YP_138168.1|	-	1.6e-15	57.3	0.0	1.1e-09	38.6	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|55380319|ref|YP_138168.1|	-	1.8e-14	53.6	0.1	1.8e-14	53.6	0.1	2.9	4	0	0	4	4	4	1	PAS	fold
GAF_3	PF13492.1	gi|55380319|ref|YP_138168.1|	-	9.8e-10	38.6	0.0	1.3e-08	34.9	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.19	gi|55380319|ref|YP_138168.1|	-	4.6e-09	36.0	0.0	8.8e-05	22.2	0.0	3.0	2	0	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.1	gi|55380319|ref|YP_138168.1|	-	5.5e-07	29.4	1.2	3.5e-06	26.8	0.1	2.3	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
GAF_2	PF13185.1	gi|55380319|ref|YP_138168.1|	-	3.3e-05	24.4	0.2	7.8e-05	23.1	0.1	1.7	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.20	gi|55380319|ref|YP_138168.1|	-	0.00024	21.0	0.0	0.00095	19.1	0.0	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|55380319|ref|YP_138168.1|	-	0.0012	18.5	0.0	0.0025	17.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|55380319|ref|YP_138168.1|	-	0.014	15.1	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	GHKL	domain
HATPase_c	PF02518.21	gi|55380320|ref|YP_138169.1|	-	3.6e-19	68.5	0.0	8.1e-19	67.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|55380320|ref|YP_138169.1|	-	1.7e-16	60.2	0.0	4e-16	59.0	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_2	PF13581.1	gi|55380320|ref|YP_138169.1|	-	3.4e-09	36.5	0.0	9.5e-09	35.1	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|55380320|ref|YP_138169.1|	-	8.8e-07	28.5	0.0	1.8e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.20	gi|55380320|ref|YP_138169.1|	-	0.00058	19.8	0.1	0.0015	18.5	0.1	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|55380320|ref|YP_138169.1|	-	0.052	13.1	0.0	0.1	12.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|55380321|ref|YP_138170.1|	-	3.7e-17	62.3	0.0	4.6e-17	62.0	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.5	gi|55380322|ref|YP_138171.1|	-	5.4e-94	309.6	40.5	5e-16	58.7	0.2	10.8	11	0	0	11	11	11	10	PAS	fold
PAS_9	PF13426.1	gi|55380322|ref|YP_138171.1|	-	2.8e-92	303.9	16.6	4e-14	52.8	0.0	10.8	10	0	0	10	10	10	10	PAS	domain
PAS	PF00989.19	gi|55380322|ref|YP_138171.1|	-	2.8e-60	201.0	16.3	1.1e-10	41.3	0.0	10.6	10	0	0	10	10	10	9	PAS	fold
PAS_3	PF08447.6	gi|55380322|ref|YP_138171.1|	-	1.8e-57	191.4	12.1	7.8e-22	77.1	0.1	7.7	8	0	0	8	8	8	4	PAS	fold
PAS_8	PF13188.1	gi|55380322|ref|YP_138171.1|	-	1.9e-46	154.3	10.5	6.7e-09	35.2	0.0	9.7	9	0	0	9	9	9	8	PAS	domain
HATPase_c	PF02518.21	gi|55380322|ref|YP_138171.1|	-	1.7e-25	88.9	0.1	3.9e-25	87.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.1	gi|55380322|ref|YP_138171.1|	-	9.9e-25	87.1	0.2	1.5e-06	28.3	0.0	4.1	3	0	0	3	3	3	3	GAF	domain
GAF	PF01590.21	gi|55380322|ref|YP_138171.1|	-	2.2e-18	66.8	0.2	5.5e-06	26.5	0.0	3.9	3	0	0	3	3	3	3	GAF	domain
GAF_2	PF13185.1	gi|55380322|ref|YP_138171.1|	-	1e-16	61.7	8.0	3.3e-06	27.6	0.1	4.6	5	0	0	5	5	4	3	GAF	domain
HisKA	PF00512.20	gi|55380322|ref|YP_138171.1|	-	3.2e-09	36.6	0.6	3.2e-09	36.6	0.4	4.0	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.1	gi|55380322|ref|YP_138171.1|	-	1.2e-08	35.2	0.0	0.066	13.4	0.0	6.0	7	0	0	7	7	6	2	PAS	domain
PAS_7	PF12860.2	gi|55380322|ref|YP_138171.1|	-	3e-08	33.6	19.4	0.16	11.9	0.0	9.9	9	2	1	10	10	10	3	PAS	fold
PAS_11	PF14598.1	gi|55380322|ref|YP_138171.1|	-	4.3e-07	29.8	0.0	0.28	11.1	0.0	5.7	7	0	0	7	7	6	2	PAS	domain
HATPase_c_3	PF13589.1	gi|55380322|ref|YP_138171.1|	-	0.00026	20.6	0.0	0.00068	19.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|55380322|ref|YP_138171.1|	-	0.0035	17.0	0.0	0.0081	15.8	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
DUF2930	PF11152.3	gi|55380322|ref|YP_138171.1|	-	0.01	15.0	0.0	0.021	13.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2930)
HxlR	PF01638.12	gi|55380323|ref|YP_138172.1|	-	6e-23	80.2	0.0	3.7e-22	77.7	0.0	2.1	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
HalX	PF08663.5	gi|55380323|ref|YP_138172.1|	-	7e-21	73.9	6.1	7e-21	73.9	4.2	4.0	4	0	0	4	4	4	2	HalX	domain
Response_reg	PF00072.19	gi|55380323|ref|YP_138172.1|	-	3.6e-18	65.5	0.6	9.5e-18	64.2	0.3	1.8	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HTH_20	PF12840.2	gi|55380323|ref|YP_138172.1|	-	0.0018	18.0	0.0	0.0039	16.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
PadR	PF03551.9	gi|55380323|ref|YP_138172.1|	-	0.004	16.8	0.1	0.0087	15.8	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Response_reg	PF00072.19	gi|55380324|ref|YP_138173.1|	-	0.071	13.1	0.1	0.12	12.4	0.1	1.5	1	1	0	1	1	1	0	Response	regulator	receiver	domain
DDE_Tnp_1	PF01609.16	gi|55380325|ref|YP_138174.1|	-	5.8e-27	94.6	0.5	7.5e-27	94.2	0.3	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|55380325|ref|YP_138174.1|	-	0.039	13.6	0.0	0.65	9.7	0.0	2.2	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|55380325|ref|YP_138174.1|	-	0.075	12.0	0.1	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
DUF21	PF01595.15	gi|55380326|ref|YP_138175.1|	-	7.2e-32	110.1	0.5	1e-31	109.6	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|55380326|ref|YP_138175.1|	-	1.7e-08	34.0	0.5	3.1e-06	26.8	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
Porin_3	PF01459.17	gi|55380328|ref|YP_138177.1|	-	0.074	12.3	0.0	0.095	11.9	0.0	1.2	1	0	0	1	1	1	0	Eukaryotic	porin
UPF0118	PF01594.11	gi|55380329|ref|YP_138178.1|	-	3.8e-43	147.7	21.3	4.6e-43	147.4	14.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF20
DUF35	PF01796.12	gi|55380330|ref|YP_138179.1|	-	6.2e-18	64.8	0.9	9.1e-18	64.2	0.6	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|55380330|ref|YP_138179.1|	-	9.2e-13	47.7	2.5	9.2e-13	47.7	1.7	1.8	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Thiolase_N	PF00108.18	gi|55380331|ref|YP_138180.1|	-	1.5e-07	30.7	0.5	8.2e-07	28.2	0.0	2.0	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|55380331|ref|YP_138180.1|	-	1.6e-07	30.7	0.7	4e-07	29.4	0.5	1.7	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|55380331|ref|YP_138180.1|	-	2.4e-05	23.9	0.4	2.4e-05	23.9	0.2	2.3	4	0	0	4	4	4	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|55380331|ref|YP_138180.1|	-	0.067	12.8	3.8	1.9	8.2	0.2	2.7	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Oxidored_FMN	PF00724.15	gi|55380332|ref|YP_138181.1|	-	1.2e-67	228.4	0.0	1.3e-67	228.1	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.16	gi|55380332|ref|YP_138181.1|	-	0.00077	18.7	0.0	0.0013	18.0	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.16	gi|55380332|ref|YP_138181.1|	-	0.016	14.1	0.0	0.027	13.4	0.0	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
SBP_bac_8	PF13416.1	gi|55380333|ref|YP_138182.1|	-	1.9e-39	136.0	1.3	2.4e-39	135.7	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|55380333|ref|YP_138182.1|	-	8.7e-27	94.6	0.3	1.1e-26	94.3	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|55380333|ref|YP_138182.1|	-	0.022	14.4	0.2	0.22	11.0	0.0	2.5	3	1	0	3	3	3	0	Bacterial	extracellular	solute-binding	protein
LGFP	PF08310.6	gi|55380333|ref|YP_138182.1|	-	0.034	13.7	0.1	0.095	12.3	0.1	1.8	1	0	0	1	1	1	0	LGFP	repeat
TAT_signal	PF10518.4	gi|55380333|ref|YP_138182.1|	-	8.9	6.6	8.8	0.23	11.5	1.1	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|55380334|ref|YP_138183.1|	-	5.5e-13	48.8	16.9	5.5e-13	48.8	11.7	2.5	2	2	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Baculo_11_kDa	PF06143.6	gi|55380334|ref|YP_138183.1|	-	0.53	9.6	0.1	0.53	9.6	0.0	2.5	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
BPD_transp_1	PF00528.17	gi|55380335|ref|YP_138184.1|	-	4.1e-12	45.9	17.2	4.1e-12	45.9	11.9	2.2	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DDE_Tnp_IS66_C	PF13817.1	gi|55380335|ref|YP_138184.1|	-	0.034	14.1	0.0	0.064	13.2	0.0	1.4	1	0	0	1	1	1	0	IS66	C-terminal	element
ABC_tran	PF00005.22	gi|55380336|ref|YP_138185.1|	-	6.5e-32	110.6	0.0	9.7e-32	110.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|55380336|ref|YP_138185.1|	-	5.6e-14	51.8	0.0	5.6e-13	48.6	0.0	2.4	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.1	gi|55380336|ref|YP_138185.1|	-	6.6e-08	32.8	0.0	0.0005	20.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|55380336|ref|YP_138185.1|	-	5e-07	29.7	0.0	6.2e-06	26.2	0.0	2.6	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.14	gi|55380336|ref|YP_138185.1|	-	9.2e-05	21.7	0.0	0.00026	20.2	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|55380336|ref|YP_138185.1|	-	0.0029	16.7	0.0	0.012	14.7	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|55380336|ref|YP_138185.1|	-	0.0034	17.3	0.1	0.0088	16.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|55380336|ref|YP_138185.1|	-	0.0038	16.7	0.1	0.0063	15.9	0.1	1.5	1	1	0	1	1	1	1	AAA-like	domain
AAA_17	PF13207.1	gi|55380336|ref|YP_138185.1|	-	0.0061	17.3	0.4	0.017	15.9	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|55380336|ref|YP_138185.1|	-	0.015	15.4	0.1	0.023	14.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|55380336|ref|YP_138185.1|	-	0.036	13.5	0.0	0.076	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|55380336|ref|YP_138185.1|	-	0.04	13.1	0.0	0.065	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|55380336|ref|YP_138185.1|	-	0.052	13.7	0.0	0.1	12.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|55380336|ref|YP_138185.1|	-	0.058	12.7	0.0	0.16	11.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Rad17	PF03215.10	gi|55380336|ref|YP_138185.1|	-	0.075	11.7	0.0	0.11	11.1	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_18	PF13238.1	gi|55380336|ref|YP_138185.1|	-	0.11	12.8	0.0	0.18	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|55380336|ref|YP_138185.1|	-	0.13	12.0	0.0	0.39	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|55380336|ref|YP_138185.1|	-	0.14	12.0	0.0	0.26	11.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
GDPD	PF03009.12	gi|55380337|ref|YP_138186.1|	-	8.3e-24	84.4	0.0	2.3e-23	83.0	0.0	1.8	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
TIM-br_sig_trns	PF09370.5	gi|55380337|ref|YP_138186.1|	-	0.0076	15.3	0.0	0.029	13.4	0.0	1.9	1	1	1	2	2	2	1	TIM-barrel	signal	transduction	protein
NMO	PF03060.10	gi|55380337|ref|YP_138186.1|	-	0.022	13.9	0.0	0.039	13.1	0.0	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
Hydrolase_6	PF13344.1	gi|55380338|ref|YP_138187.1|	-	1.9e-26	91.9	0.0	3.3e-26	91.1	0.0	1.4	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|55380338|ref|YP_138187.1|	-	7.1e-20	70.4	0.1	6.8e-19	67.3	0.0	2.4	2	1	1	3	3	3	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|55380338|ref|YP_138187.1|	-	2e-10	41.4	0.5	4.2e-10	40.3	0.4	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|55380338|ref|YP_138187.1|	-	9.8e-09	35.6	0.0	1.8e-05	25.0	0.0	2.9	2	1	1	3	3	3	2	Haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.5	gi|55380338|ref|YP_138187.1|	-	0.00059	19.2	0.0	0.0034	16.7	0.0	2.0	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.7	gi|55380338|ref|YP_138187.1|	-	0.043	13.3	0.2	0.13	11.8	0.0	1.8	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF4010	PF13194.1	gi|55380339|ref|YP_138188.1|	-	2.7e-49	167.3	19.4	2.7e-49	167.3	13.5	2.3	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.11	gi|55380339|ref|YP_138188.1|	-	4.6e-12	45.9	8.1	4.6e-12	45.9	5.6	3.3	3	0	0	3	3	3	2	MgtC	family
DUF2834	PF11196.3	gi|55380339|ref|YP_138188.1|	-	8.7	6.5	9.0	1.2	9.3	2.4	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2834)
Phosphonate-bd	PF12974.2	gi|55380340|ref|YP_138189.1|	-	1.1e-56	191.9	0.0	1.5e-56	191.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|55380340|ref|YP_138189.1|	-	0.0063	16.1	0.0	0.013	15.1	0.0	1.5	1	0	0	1	1	1	1	NMT1/THI5	like
SBP_bac_3	PF00497.15	gi|55380340|ref|YP_138189.1|	-	0.0076	15.5	0.0	0.019	14.2	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
SBP_bac_11	PF13531.1	gi|55380340|ref|YP_138189.1|	-	0.0093	15.6	0.0	0.018	14.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|55380340|ref|YP_138189.1|	-	0.024	14.5	0.0	0.05	13.6	0.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|55380341|ref|YP_138190.1|	-	2.4e-37	128.2	0.0	3.3e-37	127.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55380341|ref|YP_138190.1|	-	5.9e-11	42.8	0.1	4.9e-05	23.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|55380341|ref|YP_138190.1|	-	9.3e-06	25.8	0.0	0.0031	17.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|55380341|ref|YP_138190.1|	-	1.3e-05	26.0	0.1	2.3e-05	25.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|55380341|ref|YP_138190.1|	-	3.4e-05	23.2	0.0	6.4e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|55380341|ref|YP_138190.1|	-	6.3e-05	23.0	0.9	0.00038	20.5	0.6	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|55380341|ref|YP_138190.1|	-	0.00022	20.4	0.0	0.00033	19.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_33	PF13671.1	gi|55380341|ref|YP_138190.1|	-	0.00053	19.8	0.0	0.00091	19.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|55380341|ref|YP_138190.1|	-	0.00055	20.3	0.0	0.00082	19.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|55380341|ref|YP_138190.1|	-	0.00076	18.9	0.1	0.0048	16.3	0.0	2.0	1	1	1	2	2	2	1	AAA-like	domain
SMC_N	PF02463.14	gi|55380341|ref|YP_138190.1|	-	0.00078	18.7	0.1	0.32	10.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.1	gi|55380341|ref|YP_138190.1|	-	0.0011	18.5	0.0	0.0022	17.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|55380341|ref|YP_138190.1|	-	0.0018	18.5	0.2	0.011	16.0	0.0	2.0	1	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|55380341|ref|YP_138190.1|	-	0.0023	17.0	0.6	0.63	9.0	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
MobB	PF03205.9	gi|55380341|ref|YP_138190.1|	-	0.0035	17.0	0.0	0.006	16.2	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SbcCD_C	PF13558.1	gi|55380341|ref|YP_138190.1|	-	0.0063	16.4	0.2	0.062	13.2	0.2	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.1	gi|55380341|ref|YP_138190.1|	-	0.0083	15.8	0.1	0.021	14.5	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|55380341|ref|YP_138190.1|	-	0.015	15.1	0.0	0.029	14.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|55380341|ref|YP_138190.1|	-	0.021	14.5	0.0	0.17	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.12	gi|55380341|ref|YP_138190.1|	-	0.023	14.5	0.5	0.16	11.7	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
Mg_chelatase	PF01078.16	gi|55380341|ref|YP_138190.1|	-	0.023	13.8	0.0	0.036	13.2	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.18	gi|55380341|ref|YP_138190.1|	-	0.026	14.4	0.0	0.058	13.3	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|55380341|ref|YP_138190.1|	-	0.029	14.8	0.0	0.075	13.5	0.0	1.7	2	0	0	2	2	1	0	Miro-like	protein
NB-ARC	PF00931.17	gi|55380341|ref|YP_138190.1|	-	0.03	13.1	0.0	0.046	12.5	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_28	PF13521.1	gi|55380341|ref|YP_138190.1|	-	0.047	13.6	0.0	0.083	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|55380341|ref|YP_138190.1|	-	0.058	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
ABC_ATPase	PF09818.4	gi|55380341|ref|YP_138190.1|	-	0.092	11.3	0.2	3.4	6.1	0.0	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
ATP_bind_1	PF03029.12	gi|55380341|ref|YP_138190.1|	-	0.093	12.2	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
ArgK	PF03308.11	gi|55380341|ref|YP_138190.1|	-	0.094	11.4	0.1	0.15	10.8	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_25	PF13481.1	gi|55380341|ref|YP_138190.1|	-	0.12	11.8	0.0	0.88	8.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|55380341|ref|YP_138190.1|	-	0.13	10.8	0.2	0.32	9.6	0.0	1.6	2	1	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_PrkA	PF08298.6	gi|55380341|ref|YP_138190.1|	-	0.14	10.8	0.0	0.17	10.5	0.0	1.1	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_24	PF13479.1	gi|55380341|ref|YP_138190.1|	-	0.15	11.6	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|55380341|ref|YP_138190.1|	-	0.15	11.7	0.0	0.29	10.8	0.0	1.5	2	0	0	2	2	2	0	Archaeal	ATPase
AAA	PF00004.24	gi|55380341|ref|YP_138190.1|	-	0.15	12.2	0.2	0.93	9.6	0.0	2.2	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
BPD_transp_1	PF00528.17	gi|55380342|ref|YP_138191.1|	-	1.1e-15	57.6	8.4	1.1e-15	57.6	5.8	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
MHYT	PF03707.11	gi|55380342|ref|YP_138191.1|	-	0.61	10.2	0.1	0.61	10.2	0.0	3.3	3	1	1	4	4	4	0	Bacterial	signalling	protein	N	terminal	repeat
FtsX	PF02687.16	gi|55380342|ref|YP_138191.1|	-	3.1	7.5	16.0	0.5	10.1	3.0	2.9	3	1	0	3	3	3	0	FtsX-like	permease	family
BPD_transp_1	PF00528.17	gi|55380343|ref|YP_138192.1|	-	1.2e-15	57.5	16.6	1.2e-15	57.5	11.5	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Usp	PF00582.21	gi|55380344|ref|YP_138193.1|	-	2.2e-08	34.3	0.5	3.6e-08	33.7	0.4	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
Secretin_N	PF03958.12	gi|55380344|ref|YP_138193.1|	-	0.038	14.1	0.2	0.063	13.4	0.1	1.3	1	0	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
XRCC1_N	PF01834.11	gi|55380344|ref|YP_138193.1|	-	0.096	12.1	0.3	0.23	10.9	0.0	1.7	2	0	0	2	2	2	0	XRCC1	N	terminal	domain
FAD_binding_3	PF01494.14	gi|55380345|ref|YP_138194.1|	-	8.8e-10	38.1	2.7	1.2e-07	31.1	1.8	2.9	1	1	0	1	1	1	1	FAD	binding	domain
Amino_oxidase	PF01593.19	gi|55380345|ref|YP_138194.1|	-	0.0025	16.9	0.5	0.014	14.5	0.0	2.0	1	1	1	2	2	2	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|55380345|ref|YP_138194.1|	-	0.045	13.7	0.1	5.1	7.2	0.0	2.5	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Tubulin	PF00091.20	gi|55380346|ref|YP_138195.1|	-	2.3e-22	79.9	0.0	4.8e-22	78.8	0.0	1.5	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.1	gi|55380346|ref|YP_138195.1|	-	1.6e-05	24.0	3.5	1.9e-05	23.8	0.1	2.1	1	1	0	2	2	2	1	Tubulin	like
PASTA	PF03793.14	gi|55380346|ref|YP_138195.1|	-	0.0096	15.5	0.5	0.12	12.0	0.1	2.3	2	0	0	2	2	2	1	PASTA	domain
5_nucleotid_C	PF02872.13	gi|55380347|ref|YP_138196.1|	-	3.5e-32	111.5	0.0	6.1e-32	110.7	0.0	1.3	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos_2	PF12850.2	gi|55380347|ref|YP_138196.1|	-	6.5e-06	26.0	0.2	1.4e-05	24.9	0.1	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|55380347|ref|YP_138196.1|	-	0.00093	18.6	0.5	0.13	11.6	0.0	2.3	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase
DUF3049	PF11250.3	gi|55380347|ref|YP_138196.1|	-	0.15	11.8	1.4	3.6	7.4	0.0	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3049)
GrpB	PF04229.9	gi|55380348|ref|YP_138197.1|	-	2.1e-53	180.4	1.1	2.4e-53	180.2	0.7	1.0	1	0	0	1	1	1	1	GrpB	protein
Glyco_transf_34	PF05637.7	gi|55380348|ref|YP_138197.1|	-	0.11	11.9	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	galactosyl	transferase	GMA12/MNN10	family
Multi_Drug_Res	PF00893.14	gi|55380349|ref|YP_138198.1|	-	0.012	16.0	1.8	0.014	15.8	1.2	1.0	1	0	0	1	1	1	0	Small	Multidrug	Resistance	protein
Got1	PF04178.7	gi|55380349|ref|YP_138198.1|	-	0.041	13.9	0.2	0.048	13.7	0.1	1.2	1	0	0	1	1	1	0	Got1/Sft2-like	family
UPF0233	PF06781.7	gi|55380349|ref|YP_138198.1|	-	0.11	12.1	1.1	0.13	11.9	0.8	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0233)
IgaA	PF07095.6	gi|55380349|ref|YP_138198.1|	-	0.16	9.6	0.5	0.15	9.7	0.3	1.0	1	0	0	1	1	1	0	Intracellular	growth	attenuator	protein	IgaA
DUF3099	PF11298.3	gi|55380349|ref|YP_138198.1|	-	0.22	11.3	1.3	0.27	11.0	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3099)
DUF2530	PF10745.4	gi|55380349|ref|YP_138198.1|	-	0.25	11.3	2.6	0.33	10.9	1.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2530)
PRA1	PF03208.14	gi|55380349|ref|YP_138198.1|	-	0.27	10.5	2.0	0.27	10.5	1.4	1.0	1	0	0	1	1	1	0	PRA1	family	protein
Methyltransf_26	PF13659.1	gi|55380351|ref|YP_138200.1|	-	0.0059	16.6	0.0	0.0059	16.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|55380351|ref|YP_138200.1|	-	0.046	13.2	0.0	0.047	13.2	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
CbiA	PF01656.18	gi|55380354|ref|YP_138203.1|	-	3.2e-21	75.6	0.0	4.2e-21	75.2	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55380354|ref|YP_138203.1|	-	0.00017	21.5	0.1	0.00081	19.3	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|55380354|ref|YP_138203.1|	-	0.00021	20.4	0.0	0.0027	16.8	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|55380354|ref|YP_138203.1|	-	0.0027	16.8	0.0	0.0043	16.1	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|55380354|ref|YP_138203.1|	-	0.004	16.5	0.1	0.01	15.2	0.0	1.6	2	0	0	2	2	2	1	YhjQ	protein
XAP5	PF04921.9	gi|55380355|ref|YP_138204.1|	-	0.34	10.4	4.9	0.42	10.1	3.4	1.2	1	0	0	1	1	1	0	XAP5,	circadian	clock	regulator
Nop14	PF04147.7	gi|55380355|ref|YP_138204.1|	-	4.7	4.9	13.6	5.5	4.7	9.5	1.1	1	0	0	1	1	1	0	Nop14-like	family
DUF1510	PF07423.6	gi|55380355|ref|YP_138204.1|	-	7.9	5.7	8.7	10	5.3	6.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)