# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4589 PF15252.6 gi|55380075|ref|YP_137924.1| - 0.054 13.5 0.8 0.065 13.2 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4589) Cdc6_C PF09079.11 gi|55380076|ref|YP_137925.1| - 1.7e-16 60.0 0.4 4.3e-16 58.6 0.1 1.9 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|55380076|ref|YP_137925.1| - 1.8e-11 44.7 1.9 3.1e-09 37.5 0.0 3.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55380076|ref|YP_137925.1| - 2.7e-11 43.9 0.0 7.2e-11 42.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|55380076|ref|YP_137925.1| - 6e-06 26.3 0.0 1.4e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|55380076|ref|YP_137925.1| - 6.1e-06 26.3 0.1 1.7e-05 24.8 0.1 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|55380076|ref|YP_137925.1| - 7.3e-06 26.4 0.0 2.2e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.29 gi|55380076|ref|YP_137925.1| - 0.00058 19.7 0.3 0.4 10.4 0.0 2.4 1 1 1 2 2 2 2 DEAD/DEAH box helicase DUF815 PF05673.13 gi|55380076|ref|YP_137925.1| - 0.002 17.4 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|55380076|ref|YP_137925.1| - 0.0028 16.9 0.1 0.0059 15.8 0.0 1.5 2 0 0 2 2 2 1 NB-ARC domain AAA_32 PF13654.6 gi|55380076|ref|YP_137925.1| - 0.0033 16.3 0.2 0.79 8.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|55380076|ref|YP_137925.1| - 0.0038 17.3 0.4 1.5 8.9 0.0 3.2 3 0 0 3 3 3 1 Helicase HerA, central domain TniB PF05621.11 gi|55380076|ref|YP_137925.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein KAP_NTPase PF07693.14 gi|55380076|ref|YP_137925.1| - 0.0091 15.3 1.3 0.45 9.7 0.0 2.7 2 1 1 3 3 3 1 KAP family P-loop domain AAA_7 PF12775.7 gi|55380076|ref|YP_137925.1| - 0.011 15.2 0.0 0.096 12.2 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Flagellin_N PF00669.20 gi|55380076|ref|YP_137925.1| - 0.016 15.3 0.7 0.4 10.8 0.7 2.6 3 0 0 3 3 3 0 Bacterial flagellin N-terminal helical region Sigma54_activat PF00158.26 gi|55380076|ref|YP_137925.1| - 0.017 14.8 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|55380076|ref|YP_137925.1| - 0.02 15.3 0.0 0.052 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|55380076|ref|YP_137925.1| - 0.026 13.6 0.0 0.067 12.2 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|55380076|ref|YP_137925.1| - 0.026 15.1 0.0 0.11 13.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain TIP49_C PF17856.1 gi|55380076|ref|YP_137925.1| - 0.03 14.5 0.0 0.092 12.9 0.0 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_2 PF07724.14 gi|55380076|ref|YP_137925.1| - 0.035 14.2 0.0 0.088 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.12 gi|55380076|ref|YP_137925.1| - 0.036 13.3 0.0 0.081 12.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|55380076|ref|YP_137925.1| - 0.041 12.8 0.0 0.088 11.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.14 gi|55380076|ref|YP_137925.1| - 0.071 13.1 0.0 18 5.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|55380076|ref|YP_137925.1| - 0.091 12.7 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase RuvB_N PF05496.12 gi|55380076|ref|YP_137925.1| - 0.094 12.5 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|55380076|ref|YP_137925.1| - 0.11 12.9 0.2 0.28 11.6 0.2 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_lid_4 PF17864.1 gi|55380076|ref|YP_137925.1| - 0.11 12.3 0.1 0.31 10.8 0.1 1.9 1 0 0 1 1 1 0 RuvB AAA lid domain PIF1 PF05970.14 gi|55380076|ref|YP_137925.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.6 gi|55380076|ref|YP_137925.1| - 0.12 12.1 0.4 0.26 11.0 0.4 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|55380076|ref|YP_137925.1| - 0.17 12.0 0.2 0.55 10.3 0.0 2.0 2 0 0 2 2 1 0 50S ribosome-binding GTPase FmdA_AmdA PF03069.15 gi|55380078|ref|YP_137927.1| - 1.5e-29 103.1 7.5 2.6e-15 56.2 1.7 2.4 1 1 1 2 2 2 2 Acetamidase/Formamidase family F420_ligase PF01996.16 gi|55380078|ref|YP_137927.1| - 0.028 13.8 0.3 5.4 6.3 0.1 2.2 2 0 0 2 2 2 0 F420-0:Gamma-glutamyl ligase TRAM PF01938.20 gi|55380078|ref|YP_137927.1| - 0.49 10.4 2.0 2.5 8.1 0.2 2.6 3 0 0 3 3 3 0 TRAM domain Phage_holin_3_6 PF07332.11 gi|55380079|ref|YP_137928.1| - 0.059 13.4 3.2 0.068 13.2 3.2 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DDE_Tnp_1 PF01609.21 gi|55380080|ref|YP_137929.1| - 1.1e-22 80.7 0.0 1.6e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|55380080|ref|YP_137929.1| - 0.00059 20.1 0.1 0.0011 19.2 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain VAPB_antitox PF02697.14 gi|55380083|ref|YP_137932.1| - 1e-07 32.6 0.5 1.4e-07 32.1 0.5 1.2 1 0 0 1 1 1 1 Putative antitoxin HTH_20 PF12840.7 gi|55380085|ref|YP_137934.1| - 3.4e-08 33.4 0.5 5.3e-08 32.8 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55380085|ref|YP_137934.1| - 6.4e-06 25.9 0.2 9.9e-06 25.3 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|55380085|ref|YP_137934.1| - 2.2e-05 24.2 0.1 4.4e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|55380085|ref|YP_137934.1| - 2.5e-05 24.1 0.0 4.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|55380085|ref|YP_137934.1| - 0.00022 20.7 0.0 0.00038 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55380085|ref|YP_137934.1| - 0.00052 19.8 0.2 0.0011 18.7 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|55380085|ref|YP_137934.1| - 0.00085 19.1 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|55380085|ref|YP_137934.1| - 0.0013 18.6 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|55380085|ref|YP_137934.1| - 0.0034 17.3 0.1 0.0065 16.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF1492 PF07374.11 gi|55380085|ref|YP_137934.1| - 0.005 17.0 0.1 0.0077 16.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) DprA_WH PF17782.1 gi|55380085|ref|YP_137934.1| - 0.0054 16.8 0.1 0.019 15.1 0.3 1.9 2 1 0 2 2 2 1 DprA winged helix domain Fe_dep_repress PF01325.19 gi|55380085|ref|YP_137934.1| - 0.0067 16.6 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|55380085|ref|YP_137934.1| - 0.0076 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|55380085|ref|YP_137934.1| - 0.0085 16.2 0.0 0.073 13.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase ArsR PF09824.9 gi|55380085|ref|YP_137934.1| - 0.013 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_29 PF13551.6 gi|55380085|ref|YP_137934.1| - 0.042 13.9 0.2 0.086 12.9 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix TetR_N PF00440.23 gi|55380085|ref|YP_137934.1| - 0.047 13.5 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Rrf2 PF02082.20 gi|55380085|ref|YP_137934.1| - 0.049 14.0 0.0 0.077 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.14 gi|55380085|ref|YP_137934.1| - 0.079 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family UNC-50 PF05216.13 gi|55380086|ref|YP_137935.1| - 0.0037 16.9 0.3 0.0052 16.4 0.3 1.3 1 0 0 1 1 1 1 UNC-50 family PetL PF05115.14 gi|55380086|ref|YP_137935.1| - 0.63 10.1 0.1 0.63 10.1 0.1 3.2 3 1 0 3 3 3 0 Cytochrome B6-F complex subunit VI (PetL) SpoIIAA-like PF11964.8 gi|55380087|ref|YP_137936.1| - 0.05 14.7 0.0 0.063 14.3 0.0 1.2 1 0 0 1 1 1 0 SpoIIAA-like CdiI_2 PF18593.1 gi|55380087|ref|YP_137936.1| - 0.06 14.0 0.1 0.098 13.3 0.1 1.5 1 0 0 1 1 1 0 CdiI immunity protein FAM195 PF14799.6 gi|55380087|ref|YP_137936.1| - 0.15 12.5 2.5 0.2 12.0 0.8 1.8 1 1 1 2 2 2 0 FAM195 family Arch_flagellin PF01917.16 gi|55380089|ref|YP_137938.1| - 4.5e-23 82.2 5.0 4.9e-23 82.1 5.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF3098 PF11297.8 gi|55380090|ref|YP_137939.1| - 0.16 11.6 1.4 0.87 9.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) DUF2892 PF11127.8 gi|55380092|ref|YP_137941.1| - 1.7 8.7 7.6 0.33 11.0 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) DUF350 PF03994.14 gi|55380094|ref|YP_137943.1| - 0.0053 16.9 0.9 0.092 12.9 2.0 2.2 2 1 0 2 2 2 1 Domain of Unknown Function (DUF350) Acetyltransf_10 PF13673.7 gi|55380098|ref|YP_137947.1| - 3e-14 53.0 0.0 4.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55380098|ref|YP_137947.1| - 5.7e-13 49.1 0.0 7.8e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55380098|ref|YP_137947.1| - 9.2e-12 45.2 0.3 1.4e-11 44.6 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55380098|ref|YP_137947.1| - 2e-08 35.0 0.0 2.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55380098|ref|YP_137947.1| - 6.3e-05 23.1 0.0 0.0072 16.4 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55380098|ref|YP_137947.1| - 0.0023 18.1 0.0 0.0031 17.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55380098|ref|YP_137947.1| - 0.02 15.0 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|55380098|ref|YP_137947.1| - 0.025 14.7 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_Tnp_1 PF01609.21 gi|55380099|ref|YP_137948.1| - 1.1e-22 80.7 0.0 1.6e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|55380099|ref|YP_137948.1| - 0.00059 20.1 0.1 0.0011 19.2 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain Metallophos_2 PF12850.7 gi|55380100|ref|YP_137949.1| - 1.5e-28 100.0 0.0 2.3e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55380100|ref|YP_137949.1| - 2.1e-09 38.2 0.5 1.6e-08 35.3 0.4 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|55380100|ref|YP_137949.1| - 0.017 14.5 0.1 0.042 13.2 0.0 1.7 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily LolA_like PF17131.4 gi|55380101|ref|YP_137950.1| - 0.00091 19.0 0.1 0.0052 16.5 0.0 2.2 3 0 0 3 3 3 1 Outer membrane lipoprotein-sorting protein DUF2092 PF09865.9 gi|55380101|ref|YP_137950.1| - 0.037 13.4 0.1 0.3 10.4 0.0 2.4 3 0 0 3 3 3 0 Predicted periplasmic protein (DUF2092) SHOCT PF09851.9 gi|55380102|ref|YP_137951.1| - 1.8e-10 40.2 1.3 2.5e-10 39.7 1.3 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55380102|ref|YP_137951.1| - 0.0014 18.7 0.8 0.002 18.1 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|55380102|ref|YP_137951.1| - 0.003 17.5 0.1 0.0043 17.0 0.1 1.2 1 0 0 1 1 1 1 Gas vesicle protein G CdvA PF18822.1 gi|55380102|ref|YP_137951.1| - 0.0058 16.4 0.0 0.0073 16.1 0.0 1.1 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Tautomerase PF01361.21 gi|55380103|ref|YP_137952.1| - 3.7e-06 26.8 0.0 0.069 13.1 0.0 2.2 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|55380103|ref|YP_137952.1| - 5.1e-05 23.3 0.0 0.0031 17.6 0.0 2.0 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|55380103|ref|YP_137952.1| - 0.038 14.2 0.0 0.052 13.8 0.0 1.4 1 1 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme HTH_31 PF13560.6 gi|55380104|ref|YP_137953.1| - 0.0021 18.4 0.3 0.0025 18.1 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55380104|ref|YP_137953.1| - 0.095 12.8 0.0 0.16 12.1 0.0 1.5 1 1 1 2 2 2 0 Helix-turn-helix Na_sulph_symp PF00939.19 gi|55380105|ref|YP_137954.1| - 4e-74 250.4 36.0 4.6e-74 250.1 36.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|55380105|ref|YP_137954.1| - 2e-27 96.2 52.6 2e-27 96.2 52.6 3.9 2 1 1 3 3 3 1 Citrate transporter MFS_1 PF07690.16 gi|55380106|ref|YP_137955.1| - 0.041 12.8 2.8 0.045 12.7 2.8 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily Usp PF00582.26 gi|55380107|ref|YP_137956.1| - 7e-13 49.3 0.1 8.5e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF5602 PF18197.1 gi|55380108|ref|YP_137957.1| - 0.0062 17.0 0.0 0.35 11.4 0.0 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF5602) Exonuc_VII_L PF02601.15 gi|55380109|ref|YP_137958.1| - 4e-54 184.2 1.4 5.6e-54 183.8 1.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|55380109|ref|YP_137958.1| - 2.1e-15 56.7 0.2 4.6e-15 55.6 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|55380109|ref|YP_137958.1| - 0.0097 15.9 0.2 0.017 15.1 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4407 PF14362.6 gi|55380109|ref|YP_137958.1| - 0.13 11.6 2.4 0.23 10.8 2.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2721 PF11026.8 gi|55380109|ref|YP_137958.1| - 0.16 11.9 6.0 0.046 13.6 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) T2SSF PF00482.23 gi|55380109|ref|YP_137958.1| - 0.26 11.3 3.8 0.66 9.9 2.7 2.3 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F NleF_casp_inhib PF16809.5 gi|55380109|ref|YP_137958.1| - 0.33 10.9 2.8 0.31 10.9 1.1 1.8 2 0 0 2 2 2 0 NleF caspase inhibitor Rho_Binding PF08912.11 gi|55380109|ref|YP_137958.1| - 3 8.7 7.9 1.4 9.8 0.6 2.8 3 0 0 3 3 3 0 Rho Binding FUSC PF04632.12 gi|55380109|ref|YP_137958.1| - 3.8 5.9 8.5 5.2 5.5 8.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Exonuc_VII_S PF02609.16 gi|55380110|ref|YP_137959.1| - 7.1e-11 42.0 2.0 8.2e-11 41.8 2.0 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit Wbp11 PF09429.10 gi|55380110|ref|YP_137959.1| - 0.16 12.4 0.7 0.19 12.2 0.7 1.1 1 0 0 1 1 1 0 WW domain binding protein 11 Rnk_N PF14760.6 gi|55380110|ref|YP_137959.1| - 0.6 10.6 6.0 4 8.0 6.0 2.0 1 1 0 1 1 1 0 Rnk N-terminus HalOD1 PF18545.1 gi|55380112|ref|YP_137961.1| - 4.9e-06 26.7 0.4 6.4e-06 26.3 0.4 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 KRTDAP PF15200.6 gi|55380113|ref|YP_137962.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Keratinocyte differentiation-associated V-ATPase_H_N PF03224.14 gi|55380113|ref|YP_137962.1| - 0.26 10.5 0.0 0.28 10.4 0.0 1.1 1 0 0 1 1 1 0 V-ATPase subunit H Phage_integrase PF00589.22 gi|55380114|ref|YP_137963.1| - 8.4e-16 58.2 0.0 5.7e-15 55.5 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55380114|ref|YP_137963.1| - 2e-06 28.0 0.0 6.9e-06 26.3 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|55380114|ref|YP_137963.1| - 4.8e-06 26.8 0.0 8.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|55380114|ref|YP_137963.1| - 0.075 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 gi|55380114|ref|YP_137963.1| - 0.084 11.8 0.0 0.29 10.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Arg_decarbox_C PF17944.1 gi|55380114|ref|YP_137963.1| - 0.087 13.4 0.0 0.35 11.5 0.0 2.0 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Zip PF02535.22 gi|55380115|ref|YP_137964.1| - 0.21 10.7 1.7 0.23 10.6 1.7 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Pox_Ag35 PF03286.14 gi|55380115|ref|YP_137964.1| - 2.1 8.1 10.6 2.4 7.9 10.6 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein ApbE PF02424.15 gi|55380116|ref|YP_137965.1| - 3.8e-38 131.5 0.0 4.5e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 ApbE family TSP_3 PF02412.18 gi|55380117|ref|YP_137966.1| - 1.9e-05 24.3 1.0 1.9e-05 24.3 1.0 2.4 3 0 0 3 3 3 1 Thrombospondin type 3 repeat Ferric_reduct PF01794.19 gi|55380118|ref|YP_137967.1| - 0.0031 17.6 4.6 0.0031 17.6 4.6 1.5 1 1 0 1 1 1 1 Ferric reductase like transmembrane component DUF2620 PF10941.8 gi|55380118|ref|YP_137967.1| - 0.025 14.7 0.1 0.042 14.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF2620 HTH_20 PF12840.7 gi|55380119|ref|YP_137968.1| - 3.4e-19 68.7 1.9 3.7e-13 49.3 1.1 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|55380119|ref|YP_137968.1| - 3.5e-16 58.5 0.0 2.1e-09 36.8 0.0 2.5 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55380119|ref|YP_137968.1| - 9.8e-16 57.4 0.0 4e-10 39.4 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|55380119|ref|YP_137968.1| - 1.1e-10 41.8 0.1 2.8e-05 24.4 0.0 2.3 1 1 1 2 2 2 2 Penicillinase repressor MarR_2 PF12802.7 gi|55380119|ref|YP_137968.1| - 2.9e-10 39.9 1.1 8.2e-06 25.6 0.2 2.4 3 0 0 3 3 2 2 MarR family TrmB PF01978.19 gi|55380119|ref|YP_137968.1| - 3.4e-10 39.6 0.0 2.8e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|55380119|ref|YP_137968.1| - 3.5e-08 33.8 0.4 5.9e-06 26.7 0.3 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|55380119|ref|YP_137968.1| - 9.9e-07 28.6 0.1 0.0014 18.5 0.2 2.2 2 0 0 2 2 2 2 MarR family RP-C PF03428.13 gi|55380119|ref|YP_137968.1| - 9.3e-06 25.4 0.1 0.12 12.0 0.1 2.3 1 1 1 2 2 2 2 Replication protein C N-terminal domain Fe_dep_repress PF01325.19 gi|55380119|ref|YP_137968.1| - 9.7e-06 25.7 0.0 9.3e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|55380119|ref|YP_137968.1| - 3.1e-05 23.7 0.4 0.00047 19.9 0.1 2.7 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|55380119|ref|YP_137968.1| - 0.00011 22.4 0.0 0.44 10.8 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|55380119|ref|YP_137968.1| - 0.00023 21.1 0.1 0.0053 16.7 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|55380119|ref|YP_137968.1| - 0.00039 20.1 0.1 0.0083 15.8 0.1 2.3 2 1 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|55380119|ref|YP_137968.1| - 0.0017 18.1 0.4 0.0042 16.9 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mrr_N PF14338.6 gi|55380119|ref|YP_137968.1| - 0.0027 17.8 0.2 0.077 13.1 0.0 2.3 2 1 0 2 2 2 1 Mrr N-terminal domain DUF2513 PF10711.9 gi|55380119|ref|YP_137968.1| - 0.0029 17.9 0.0 3.1 8.1 0.0 2.2 1 1 0 2 2 2 2 Hypothetical protein (DUF2513) Rrf2 PF02082.20 gi|55380119|ref|YP_137968.1| - 0.0087 16.4 0.0 0.05 13.9 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator PaaX PF07848.12 gi|55380119|ref|YP_137968.1| - 0.016 15.4 0.1 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 PaaX-like protein BLACT_WH PF17778.1 gi|55380119|ref|YP_137968.1| - 0.085 12.9 0.7 0.59 10.2 0.1 2.6 3 0 0 3 3 3 0 Beta-lactamase associated winged helix domain SMC_ScpB PF04079.16 gi|55380119|ref|YP_137968.1| - 0.091 12.4 0.0 0.29 10.7 0.0 1.8 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB DnaG_DnaB_bind PF08278.11 gi|55380119|ref|YP_137968.1| - 0.095 13.3 0.2 0.56 10.8 0.1 1.9 1 1 1 2 2 2 0 DNA primase DnaG DnaB-binding HTH_11 PF08279.12 gi|55380119|ref|YP_137968.1| - 0.2 11.6 0.9 0.89 9.6 0.2 2.1 2 0 0 2 2 2 0 HTH domain 7TMR-DISM_7TM PF07695.11 gi|55380120|ref|YP_137969.1| - 0.0022 17.9 5.2 0.0024 17.8 5.2 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling PalH PF08733.10 gi|55380120|ref|YP_137969.1| - 0.097 11.7 0.1 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 PalH/RIM21 Gram_pos_anchor PF00746.21 gi|55380120|ref|YP_137969.1| - 0.18 11.8 3.4 11 6.1 1.0 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF4131 PF13567.6 gi|55380120|ref|YP_137969.1| - 0.27 10.9 9.5 0.017 14.8 3.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2768 PF10966.8 gi|55380120|ref|YP_137969.1| - 0.95 9.9 7.1 2.1 8.8 2.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2768) DDE_Tnp_1 PF01609.21 gi|55380121|ref|YP_137970.1| - 9.1e-08 32.0 1.6 1.1e-07 31.8 1.6 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF3368 PF11848.8 gi|55380122|ref|YP_137971.1| - 0.00092 18.9 0.1 0.0027 17.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN PF01850.21 gi|55380122|ref|YP_137971.1| - 0.028 14.9 0.4 0.16 12.5 0.1 2.1 2 0 0 2 2 2 0 PIN domain UPF0175 PF03683.13 gi|55380123|ref|YP_137972.1| - 8.7e-16 57.4 1.4 1.2e-15 56.9 1.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF218 PF02698.17 gi|55380123|ref|YP_137972.1| - 0.1 12.6 0.2 0.14 12.2 0.2 1.2 1 0 0 1 1 1 0 DUF218 domain AAA_31 PF13614.6 gi|55380127|ref|YP_137976.1| - 3.8e-29 101.9 0.0 5.4e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55380127|ref|YP_137976.1| - 9.5e-11 41.9 0.0 1.9e-10 40.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|55380127|ref|YP_137976.1| - 1.5e-07 31.1 0.2 5.1e-07 29.4 0.1 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|55380127|ref|YP_137976.1| - 5.9e-07 29.0 0.1 0.00045 19.6 0.1 2.7 3 0 0 3 3 3 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|55380127|ref|YP_137976.1| - 1.7e-06 27.7 0.0 3.1e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|55380127|ref|YP_137976.1| - 7.7e-05 22.0 0.0 0.00095 18.4 0.0 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase VirC1 PF07015.11 gi|55380127|ref|YP_137976.1| - 0.0035 16.7 0.0 0.97 8.7 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein Fer4_NifH PF00142.18 gi|55380127|ref|YP_137976.1| - 0.0041 16.6 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|55380127|ref|YP_137976.1| - 0.011 15.5 0.1 0.033 14.0 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|55380127|ref|YP_137976.1| - 0.044 13.4 0.1 4.7 6.8 0.0 2.6 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Glyco_transf_4 PF13439.6 gi|55380127|ref|YP_137976.1| - 0.065 13.2 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 APS_kinase PF01583.20 gi|55380127|ref|YP_137976.1| - 0.07 13.0 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase MeaB PF03308.16 gi|55380127|ref|YP_137976.1| - 0.15 11.0 0.1 5.7 5.8 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Cdc6_C PF09079.11 gi|55380128|ref|YP_137977.1| - 3.2e-14 52.6 0.1 6.3e-14 51.7 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55380128|ref|YP_137977.1| - 9.1e-12 45.4 0.0 1.8e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|55380128|ref|YP_137977.1| - 6.7e-10 39.6 0.4 5e-09 36.8 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA PF00004.29 gi|55380128|ref|YP_137977.1| - 2.3e-09 37.7 0.0 8.2e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|55380128|ref|YP_137977.1| - 0.0016 17.7 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|55380128|ref|YP_137977.1| - 0.0065 16.4 0.0 0.013 15.4 0.0 1.5 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|55380128|ref|YP_137977.1| - 0.028 14.3 0.0 0.11 12.4 0.0 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PaaX PF07848.12 gi|55380128|ref|YP_137977.1| - 0.034 14.3 0.0 0.086 13.1 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Sigma54_activat PF00158.26 gi|55380128|ref|YP_137977.1| - 0.038 13.7 0.0 0.09 12.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain TniB PF05621.11 gi|55380128|ref|YP_137977.1| - 0.055 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein DEAD PF00270.29 gi|55380128|ref|YP_137977.1| - 0.097 12.4 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|55380128|ref|YP_137977.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Pentapeptide_3 PF13576.6 gi|55380131|ref|YP_137980.1| - 1.5e-42 143.5 104.1 1e-09 38.4 4.8 9.6 6 3 5 11 11 11 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|55380131|ref|YP_137980.1| - 1.5e-06 28.1 3.9 1.5e-06 28.1 3.9 2.4 1 1 1 2 2 2 1 Ion channel DUF3060 PF11259.8 gi|55380132|ref|YP_137981.1| - 0.039 13.7 8.6 0.41 10.4 1.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3060) DUF2617 PF10936.8 gi|55380133|ref|YP_137982.1| - 7.1e-08 32.7 1.4 1.7e-06 28.2 1.4 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF2617 Spermine_synth PF01564.17 gi|55380134|ref|YP_137983.1| - 1.7e-13 50.4 0.0 2.6e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|55380134|ref|YP_137983.1| - 0.055 13.4 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase CPBP PF02517.16 gi|55380135|ref|YP_137984.1| - 5.6e-14 52.3 5.8 5.6e-14 52.3 5.8 2.9 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF2105 PF09878.9 gi|55380135|ref|YP_137984.1| - 0.53 10.0 9.7 0.23 11.1 1.1 2.6 3 0 0 3 3 3 0 Predicted membrane protein (DUF2105) MASE3 PF17159.4 gi|55380137|ref|YP_137985.1| - 0.01 15.5 0.2 0.011 15.4 0.2 1.1 1 0 0 1 1 1 0 Membrane-associated sensor domain DUF1772 PF08592.11 gi|55380137|ref|YP_137985.1| - 0.021 15.2 1.1 0.022 15.1 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) MerC PF03203.14 gi|55380137|ref|YP_137985.1| - 0.032 14.7 1.5 0.039 14.4 1.5 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein DUF5381 PF17353.2 gi|55380137|ref|YP_137985.1| - 0.044 13.5 1.3 0.054 13.2 1.0 1.2 1 1 0 1 1 1 0 Family of unknown function (DUF5381) LrgB PF04172.16 gi|55380137|ref|YP_137985.1| - 0.062 12.8 4.9 0.039 13.5 3.5 1.4 2 0 0 2 2 2 0 LrgB-like family Glyco_transf_21 PF13506.6 gi|55380136|ref|YP_137986.1| - 1.3e-12 47.5 0.0 2.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|55380136|ref|YP_137986.1| - 8.9e-07 28.9 0.3 2.3e-06 27.5 0.3 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55380136|ref|YP_137986.1| - 0.0079 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF4781 PF16013.5 gi|55380136|ref|YP_137986.1| - 0.12 11.1 0.6 0.2 10.4 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF4229 PF14012.6 gi|55380136|ref|YP_137986.1| - 0.55 10.4 9.3 0.42 10.7 5.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) HTH_20 PF12840.7 gi|55380138|ref|YP_137987.1| - 1e-06 28.7 0.2 2.6e-06 27.4 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|55380138|ref|YP_137987.1| - 2.4e-06 27.3 0.1 4.5e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|55380138|ref|YP_137987.1| - 5.6e-05 22.9 0.2 0.00014 21.6 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55380138|ref|YP_137987.1| - 0.00013 21.8 0.0 0.00042 20.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|55380138|ref|YP_137987.1| - 0.00016 21.5 0.0 0.00054 19.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|55380138|ref|YP_137987.1| - 0.00033 20.5 0.1 0.00058 19.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Tnp_ISL3 PF13542.6 gi|55380138|ref|YP_137987.1| - 0.0037 16.7 0.0 0.0076 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 gi|55380138|ref|YP_137987.1| - 0.0058 16.4 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55380138|ref|YP_137987.1| - 0.0086 16.0 0.0 0.03 14.3 0.0 1.9 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55380138|ref|YP_137987.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55380138|ref|YP_137987.1| - 0.014 15.3 0.2 0.049 13.5 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 gi|55380138|ref|YP_137987.1| - 0.042 13.6 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Methyltransf_13 PF08421.11 gi|55380140|ref|YP_137989.1| - 0.0077 16.5 0.5 0.032 14.5 0.0 1.9 2 0 0 2 2 2 1 Putative zinc binding domain A2L_zn_ribbon PF08792.10 gi|55380140|ref|YP_137989.1| - 0.0092 15.7 1.8 0.31 10.8 0.2 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain TackOD1 PF18551.1 gi|55380140|ref|YP_137989.1| - 0.014 15.1 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 UPF0547 PF10571.9 gi|55380140|ref|YP_137989.1| - 0.023 14.8 4.0 0.21 11.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|55380140|ref|YP_137989.1| - 0.052 13.1 1.1 3 7.5 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|55380140|ref|YP_137989.1| - 0.062 12.9 0.8 1.4 8.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin PF00301.20 gi|55380140|ref|YP_137989.1| - 0.07 13.2 0.5 9.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.7 gi|55380140|ref|YP_137989.1| - 0.077 13.0 0.1 13 5.8 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain IBR PF01485.21 gi|55380140|ref|YP_137989.1| - 0.093 13.0 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DUF1610 PF07754.11 gi|55380140|ref|YP_137989.1| - 0.12 12.4 2.5 0.37 10.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HypA PF01155.19 gi|55380143|ref|YP_137992.1| - 0.0011 19.0 4.1 0.46 10.5 0.6 2.3 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|55380143|ref|YP_137992.1| - 0.0033 18.1 3.8 0.082 13.7 0.5 2.4 2 0 0 2 2 2 1 zinc-ribbon family DUF4596 PF15363.6 gi|55380143|ref|YP_137992.1| - 0.022 15.0 0.2 0.063 13.5 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) DZR PF12773.7 gi|55380143|ref|YP_137992.1| - 0.023 14.7 11.4 0.06 13.4 1.0 2.8 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|55380143|ref|YP_137992.1| - 0.099 12.6 8.2 2.1 8.4 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbons Baculo_LEF5_C PF11792.8 gi|55380143|ref|YP_137992.1| - 0.38 10.5 0.0 0.38 10.5 0.0 2.8 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain RNA_POL_M_15KD PF02150.16 gi|55380143|ref|YP_137992.1| - 0.43 10.5 6.2 20 5.2 0.0 3.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|55380143|ref|YP_137992.1| - 2.5 7.7 9.7 1.7 8.2 2.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RNHCP PF12647.7 gi|55380143|ref|YP_137992.1| - 7.9 6.5 8.7 14 5.8 0.3 3.1 2 1 1 3 3 3 0 RNHCP domain zf_UBZ PF18439.1 gi|55380143|ref|YP_137992.1| - 8.9 6.0 11.7 3.7 7.2 1.6 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF3368 PF11848.8 gi|55380144|ref|YP_137993.1| - 1.8e-14 53.3 0.0 2.9e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UPF0175 PF03683.13 gi|55380145|ref|YP_137994.1| - 7.5e-22 76.8 1.1 8.3e-22 76.7 1.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_ParB PF17762.1 gi|55380145|ref|YP_137994.1| - 0.023 14.5 0.1 0.03 14.1 0.1 1.4 1 1 0 1 1 1 0 HTH domain found in ParB protein zf-H3C2 PF16721.5 gi|55380145|ref|YP_137994.1| - 0.1 12.9 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Zinc-finger like, probable DNA-binding Sensor PF13796.6 gi|55380146|ref|YP_137995.1| - 1.1e-37 129.5 22.4 1.5e-37 129.2 22.4 1.1 1 0 0 1 1 1 1 Putative sensor Melittin PF01372.17 gi|55380146|ref|YP_137995.1| - 0.39 10.7 0.1 0.39 10.7 0.1 3.9 4 0 0 4 4 4 0 Melittin TrmB PF01978.19 gi|55380147|ref|YP_137996.1| - 0.0084 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55380147|ref|YP_137996.1| - 0.0085 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|55380147|ref|YP_137996.1| - 0.0092 16.0 0.4 0.013 15.6 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|55380147|ref|YP_137996.1| - 0.023 14.1 0.2 0.086 12.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 PadR PF03551.14 gi|55380147|ref|YP_137996.1| - 0.025 14.6 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GT87 PF09594.10 gi|55380148|ref|YP_137997.1| - 0.083 12.6 11.9 0.1 12.3 11.9 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 87 PsaL PF02605.15 gi|55380149|ref|YP_137998.1| - 0.044 13.4 0.9 0.058 13.0 0.5 1.3 1 1 0 1 1 1 0 Photosystem I reaction centre subunit XI Sensor PF13796.6 gi|55380150|ref|YP_137999.1| - 5.9e-35 120.7 22.2 7e-35 120.5 22.2 1.1 1 0 0 1 1 1 1 Putative sensor HTH_20 PF12840.7 gi|55380151|ref|YP_138000.1| - 6.1e-07 29.4 0.1 9.3e-07 28.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55380151|ref|YP_138000.1| - 6.1e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|55380151|ref|YP_138000.1| - 1.4e-05 24.8 0.0 2.9e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|55380151|ref|YP_138000.1| - 9.5e-05 22.4 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|55380151|ref|YP_138000.1| - 0.0003 20.6 0.0 0.0006 19.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|55380151|ref|YP_138000.1| - 0.00068 19.5 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|55380151|ref|YP_138000.1| - 0.00093 18.7 0.0 0.004 16.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|55380151|ref|YP_138000.1| - 0.00096 18.9 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PadR PF03551.14 gi|55380151|ref|YP_138000.1| - 0.0015 18.5 0.0 0.0049 16.8 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|55380151|ref|YP_138000.1| - 0.0022 17.7 0.0 0.0059 16.4 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|55380151|ref|YP_138000.1| - 0.0027 17.5 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|55380151|ref|YP_138000.1| - 0.0044 17.1 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55380151|ref|YP_138000.1| - 0.035 14.1 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|55380151|ref|YP_138000.1| - 0.035 13.9 0.0 0.045 13.6 0.0 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Phospho_p8 PF10195.9 gi|55380151|ref|YP_138000.1| - 0.048 14.2 0.0 0.37 11.3 0.0 2.0 2 0 0 2 2 2 0 DNA-binding nuclear phosphoprotein p8 P22_AR_N PF10547.9 gi|55380151|ref|YP_138000.1| - 0.075 13.4 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 P22_AR N-terminal domain HTH_29 PF13551.6 gi|55380151|ref|YP_138000.1| - 0.084 12.9 0.0 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|55380151|ref|YP_138000.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Aldedh PF00171.22 gi|55380152|ref|YP_138001.1| - 1.7e-171 570.8 0.7 2e-171 570.6 0.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family HTH_33 PF13592.6 gi|55380153|ref|YP_138002.1| - 0.0083 15.7 0.0 0.022 14.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix NIPSNAP PF07978.13 gi|55380153|ref|YP_138002.1| - 0.071 13.3 0.3 0.12 12.6 0.3 1.3 1 0 0 1 1 1 0 NIPSNAP DUF1280 PF06918.14 gi|55380153|ref|YP_138002.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) DDE_Tnp_1 PF01609.21 gi|55380154|ref|YP_138003.1| - 6.6e-14 52.1 6.3 4.2e-13 49.4 6.3 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|55380154|ref|YP_138003.1| - 0.00039 20.4 0.0 0.0012 18.8 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|55380154|ref|YP_138003.1| - 0.016 15.6 1.0 0.031 14.6 0.4 1.8 2 0 0 2 2 2 0 Transposase DDE domain DUF1474 PF07342.11 gi|55380154|ref|YP_138003.1| - 0.18 12.3 0.2 0.66 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1474) Aldedh PF00171.22 gi|55380155|ref|YP_138004.1| - 1.7e-164 547.7 0.0 1.9e-164 547.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|55380155|ref|YP_138004.1| - 0.017 14.2 0.0 0.045 12.8 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF3813 PF12758.7 gi|55380155|ref|YP_138004.1| - 0.022 15.1 0.1 0.051 13.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3813) Copper-bind PF00127.20 gi|55380157|ref|YP_138006.1| - 3.1e-15 56.4 0.9 1e-14 54.8 0.3 2.0 1 1 1 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55380157|ref|YP_138006.1| - 0.00065 19.4 1.8 0.0012 18.6 1.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|55380157|ref|YP_138006.1| - 0.068 13.3 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain Herpes_LMP2 PF07415.11 gi|55380157|ref|YP_138006.1| - 0.14 10.9 0.4 0.18 10.6 0.4 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein Herpes_U5 PF05999.11 gi|55380158|ref|YP_138007.1| - 0.049 12.4 0.2 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 Herpesvirus U5-like family Crystall_2 PF09076.10 gi|55380160|ref|YP_138009.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.5 2 0 0 2 2 2 0 Beta/Gamma crystallin TOBE_3 PF12857.7 gi|55380160|ref|YP_138009.1| - 0.022 14.6 0.1 0.049 13.6 0.0 1.5 2 0 0 2 2 2 0 TOBE-like domain TOBE_2 PF08402.10 gi|55380160|ref|YP_138009.1| - 0.028 14.6 1.6 0.14 12.4 1.5 1.9 1 1 1 2 2 2 0 TOBE domain DUF2163 PF09931.9 gi|55380160|ref|YP_138009.1| - 0.11 12.7 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) RecT PF03837.14 gi|55380160|ref|YP_138009.1| - 0.15 11.5 0.0 0.16 11.5 0.0 1.0 1 0 0 1 1 1 0 RecT family Inositol_P PF00459.25 gi|55380161|ref|YP_138010.1| - 2.3e-59 201.2 0.5 2.8e-59 200.9 0.5 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family SBP_bac_8 PF13416.6 gi|55380162|ref|YP_138011.1| - 3.2e-17 63.3 1.0 4.1e-17 62.9 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55380162|ref|YP_138011.1| - 1e-15 58.6 6.7 5e-15 56.3 4.2 2.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55380162|ref|YP_138011.1| - 0.0055 16.5 2.2 0.011 15.6 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55380162|ref|YP_138011.1| - 0.02 14.2 1.6 0.037 13.4 1.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|55380163|ref|YP_138012.1| - 3.8e-12 46.3 12.8 3.8e-12 46.3 12.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_4_1 PF05105.12 gi|55380163|ref|YP_138012.1| - 8 6.6 8.7 0.16 12.1 0.9 2.2 3 0 0 3 3 3 0 Bacteriophage holin family DUF4896 PF16237.5 gi|55380163|ref|YP_138012.1| - 8.4 6.3 9.7 2.8 7.9 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4896) BPD_transp_1 PF00528.22 gi|55380164|ref|YP_138013.1| - 4.4e-16 59.2 16.9 4.4e-16 59.2 16.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|55380165|ref|YP_138014.1| - 6.6e-34 117.4 0.0 1e-33 116.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|55380165|ref|YP_138014.1| - 1e-07 32.7 0.0 8.1e-07 29.8 0.0 2.6 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|55380165|ref|YP_138014.1| - 2e-07 31.2 0.0 0.0035 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|55380165|ref|YP_138014.1| - 3.2e-07 30.4 0.5 1e-06 28.8 0.2 2.1 2 0 0 2 2 1 1 TOBE domain Zeta_toxin PF06414.12 gi|55380165|ref|YP_138014.1| - 0.0011 18.3 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|55380165|ref|YP_138014.1| - 0.0022 18.4 0.0 0.0053 17.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|55380165|ref|YP_138014.1| - 0.0041 17.0 0.0 0.013 15.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|55380165|ref|YP_138014.1| - 0.0045 17.4 0.1 0.0077 16.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|55380165|ref|YP_138014.1| - 0.005 16.3 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|55380165|ref|YP_138014.1| - 0.0087 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|55380165|ref|YP_138014.1| - 0.0088 16.3 0.4 0.019 15.3 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|55380165|ref|YP_138014.1| - 0.02 15.4 0.4 0.04 14.4 0.4 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|55380165|ref|YP_138014.1| - 0.047 13.3 0.1 0.25 10.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|55380165|ref|YP_138014.1| - 0.048 13.0 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TOBE PF03459.17 gi|55380165|ref|YP_138014.1| - 0.061 13.6 0.1 0.15 12.4 0.1 1.7 1 0 0 1 1 1 0 TOBE domain AAA_30 PF13604.6 gi|55380165|ref|YP_138014.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55380165|ref|YP_138014.1| - 0.092 13.0 0.2 0.2 11.9 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|55380165|ref|YP_138014.1| - 0.11 12.6 0.1 0.2 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|55380165|ref|YP_138014.1| - 0.14 11.7 0.1 0.78 9.3 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|55380165|ref|YP_138014.1| - 0.2 11.4 0.0 0.45 10.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RicinB_lectin_2 PF14200.6 gi|55380166|ref|YP_138015.1| - 2.8e-33 114.5 17.2 4.8e-17 62.5 2.0 3.7 1 1 2 3 3 3 3 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|55380166|ref|YP_138015.1| - 1.9e-12 47.5 0.1 4e-12 46.5 0.1 1.6 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain Tropomyosin PF00261.20 gi|55380167|ref|YP_138016.1| - 8.5e-05 22.0 7.6 0.00014 21.3 7.6 1.3 1 0 0 1 1 1 1 Tropomyosin Herpes_UL25 PF01499.16 gi|55380167|ref|YP_138016.1| - 0.011 14.3 1.9 0.016 13.7 1.9 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family CorA PF01544.18 gi|55380167|ref|YP_138016.1| - 0.036 13.4 2.4 0.054 12.8 2.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Jnk-SapK_ap_N PF09744.9 gi|55380167|ref|YP_138016.1| - 0.043 14.1 3.5 0.077 13.2 3.5 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 HTH_Tnp_Tc3_2 PF01498.18 gi|55380167|ref|YP_138016.1| - 0.067 13.5 0.1 0.2 11.9 0.1 1.8 1 0 0 1 1 1 0 Transposase DASH_Spc19 PF08287.11 gi|55380167|ref|YP_138016.1| - 0.12 12.3 3.8 0.21 11.5 3.8 1.4 1 0 0 1 1 1 0 Spc19 TetR_C_23 PF17931.1 gi|55380167|ref|YP_138016.1| - 0.12 12.5 0.3 0.26 11.4 0.3 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF4795 PF16043.5 gi|55380167|ref|YP_138016.1| - 0.43 10.1 6.4 1.5 8.3 6.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF1664 PF07889.12 gi|55380167|ref|YP_138016.1| - 1 9.4 5.0 2.8 8.0 0.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) HrpB7 PF09486.10 gi|55380167|ref|YP_138016.1| - 1 9.7 13.8 0.34 11.3 11.0 1.6 2 0 0 2 2 1 0 Bacterial type III secretion protein (HrpB7) BST2 PF16716.5 gi|55380167|ref|YP_138016.1| - 1.5 9.5 8.3 6.8 7.4 6.3 2.5 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF4407 PF14362.6 gi|55380167|ref|YP_138016.1| - 3.3 7.0 11.9 0.94 8.8 9.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) LPP PF04728.13 gi|55380167|ref|YP_138016.1| - 8.5 6.9 11.1 0.51 10.8 0.4 3.2 2 1 1 3 3 3 0 Lipoprotein leucine-zipper PadR PF03551.14 gi|55380170|ref|YP_138019.1| - 2e-12 46.9 0.1 2.4e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55380170|ref|YP_138019.1| - 0.0056 16.6 0.0 0.0083 16.1 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|55380170|ref|YP_138019.1| - 0.0097 15.7 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|55380170|ref|YP_138019.1| - 0.01 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix FUR PF01475.19 gi|55380170|ref|YP_138019.1| - 0.033 14.3 0.0 0.035 14.3 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_27 PF13463.6 gi|55380170|ref|YP_138019.1| - 0.034 14.6 0.0 0.069 13.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3288 PF11691.8 gi|55380170|ref|YP_138019.1| - 0.04 14.0 0.4 0.057 13.5 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3288) HTH_34 PF13601.6 gi|55380170|ref|YP_138019.1| - 0.048 13.9 0.0 0.07 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|55380170|ref|YP_138019.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Amidase PF01425.21 gi|55380171|ref|YP_138020.1| - 1e-95 321.4 0.0 1.2e-95 321.1 0.0 1.1 1 0 0 1 1 1 1 Amidase Transcrip_reg PF01709.20 gi|55380173|ref|YP_138022.1| - 0.15 11.5 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF3953 PF13129.6 gi|55380174|ref|YP_138023.1| - 0.012 15.3 0.5 0.012 15.3 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) DUF2556 PF10831.8 gi|55380174|ref|YP_138023.1| - 0.026 14.5 0.2 1.2 9.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2556) META PF03724.16 gi|55380175|ref|YP_138024.1| - 0.00023 21.1 0.8 0.48 10.4 0.2 2.7 2 1 0 2 2 2 2 META domain HTH_20 PF12840.7 gi|55380176|ref|YP_138025.1| - 4.3e-14 52.3 0.1 8.5e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55380176|ref|YP_138025.1| - 5.7e-08 32.5 0.1 2e-07 30.8 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|55380176|ref|YP_138025.1| - 1.6e-07 31.1 0.0 2.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|55380176|ref|YP_138025.1| - 1.1e-05 24.9 0.0 2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|55380176|ref|YP_138025.1| - 0.001 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|55380176|ref|YP_138025.1| - 0.027 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|55380176|ref|YP_138025.1| - 0.028 14.9 0.0 0.053 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain COG5 PF10392.9 gi|55380176|ref|YP_138025.1| - 0.052 13.7 0.1 0.11 12.7 0.1 1.5 2 0 0 2 2 2 0 Golgi transport complex subunit 5 TrmB PF01978.19 gi|55380176|ref|YP_138025.1| - 0.058 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 gi|55380176|ref|YP_138025.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.12 gi|55380176|ref|YP_138025.1| - 0.17 11.9 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 HTH domain Wzy_C_2 PF11846.8 gi|55380177|ref|YP_138026.1| - 0.19 11.6 2.9 0.097 12.6 0.9 1.4 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal DDE_Tnp_1 PF01609.21 gi|55380179|ref|YP_138028.1| - 1.1e-22 80.7 0.0 1.6e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|55380179|ref|YP_138028.1| - 0.00059 20.1 0.1 0.0011 19.2 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain PHD_like PF12910.7 gi|55380180|ref|YP_138029.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system DUF3828 PF12883.7 gi|55380180|ref|YP_138029.1| - 0.012 16.0 0.1 0.018 15.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3828) Frankia_peptide PF14407.6 gi|55380180|ref|YP_138029.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HicA_toxin PF07927.12 gi|55380181|ref|YP_138030.1| - 1.8e-15 56.7 0.0 2.1e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Fic PF02661.18 gi|55380184|ref|YP_138033.1| - 0.0001 23.1 0.0 0.0002 22.2 0.0 1.5 2 0 0 2 2 2 1 Fic/DOC family HATPase_c PF02518.26 gi|55380186|ref|YP_138035.1| - 8.7e-13 48.8 0.0 1.8e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|55380186|ref|YP_138035.1| - 1.8e-09 37.6 0.0 2.3e-08 34.1 0.0 2.6 3 0 0 3 3 3 1 PAS fold HisKA_7TM PF16927.5 gi|55380186|ref|YP_138035.1| - 3.7e-09 37.0 21.6 5.8e-09 36.3 21.6 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|55380186|ref|YP_138035.1| - 7.3e-07 29.4 0.2 0.0046 17.2 0.0 3.4 3 1 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|55380186|ref|YP_138035.1| - 2e-06 27.8 0.0 3.8e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|55380186|ref|YP_138035.1| - 8.6e-05 22.2 0.2 0.00019 21.0 0.2 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_9 PF13426.7 gi|55380186|ref|YP_138035.1| - 0.0053 17.0 0.0 0.049 13.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|55380186|ref|YP_138035.1| - 0.049 14.2 0.0 0.19 12.3 0.0 2.0 1 0 0 1 1 1 0 PAS domain PAS_3 PF08447.12 gi|55380186|ref|YP_138035.1| - 0.09 13.1 0.0 0.64 10.4 0.0 2.3 3 0 0 3 3 3 0 PAS fold RHH_1 PF01402.21 gi|55380187|ref|YP_138036.1| - 1.1e-05 25.2 0.4 1.8e-05 24.5 0.1 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|55380187|ref|YP_138036.1| - 0.00056 20.6 2.5 0.0021 18.8 2.5 2.0 1 1 0 1 1 1 1 Rv0623-like transcription factor VapB_antitoxin PF09957.9 gi|55380187|ref|YP_138036.1| - 0.0021 17.9 2.1 0.014 15.3 0.8 2.2 2 0 0 2 2 2 1 Bacterial antitoxin of type II TA system, VapB DUF1160 PF06648.11 gi|55380187|ref|YP_138036.1| - 0.017 15.1 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1160) HicB_lk_antitox PF15919.5 gi|55380187|ref|YP_138036.1| - 0.028 14.5 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|55380187|ref|YP_138036.1| - 0.033 14.1 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF1778 PF08681.11 gi|55380187|ref|YP_138036.1| - 0.035 14.0 0.2 0.063 13.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) PIN_4 PF13638.6 gi|55380188|ref|YP_138037.1| - 0.039 14.2 0.9 0.12 12.6 0.2 1.9 1 1 1 2 2 2 0 PIN domain PIN_9 PF18477.1 gi|55380188|ref|YP_138037.1| - 0.11 12.8 1.9 0.15 12.4 1.5 1.5 1 1 0 1 1 1 0 PIN like domain DUF4327 PF14217.6 gi|55380188|ref|YP_138037.1| - 0.13 12.4 0.1 0.29 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4327) FAM176 PF14851.6 gi|55380191|ref|YP_138040.1| - 0.073 12.7 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 FAM176 family TMEM100 PF16311.5 gi|55380191|ref|YP_138040.1| - 0.13 11.9 0.2 0.18 11.4 0.2 1.2 1 0 0 1 1 1 0 Transmembrane protein 100 DUF2237 PF09996.9 gi|55380192|ref|YP_138041.1| - 0.094 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2237) DUF3570 PF12094.8 gi|55380192|ref|YP_138041.1| - 0.14 10.9 0.0 0.26 10.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3570) DDE_Tnp_1 PF01609.21 gi|55380195|ref|YP_138044.1| - 2.5e-26 92.6 0.2 3.2e-26 92.3 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Corona_3 PF04694.12 gi|55380195|ref|YP_138044.1| - 0.088 13.2 1.1 0.27 11.6 0.1 2.2 2 0 0 2 2 2 0 Coronavirus ORF3 protein DDE_Tnp_2 PF04693.12 gi|55380195|ref|YP_138044.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 TFIIB PF00382.19 gi|55380197|ref|YP_138046.1| - 4.4e-08 33.0 0.0 6.7e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Transcription factor TFIIB repeat HTH_23 PF13384.6 gi|55380197|ref|YP_138046.1| - 0.11 12.4 1.4 0.78 9.6 0.0 2.6 2 1 1 3 3 3 0 Homeodomain-like domain HicB_lk_antitox PF15919.5 gi|55380198|ref|YP_138047.1| - 0.0043 17.2 0.0 0.0074 16.4 0.0 1.4 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_1 PF01402.21 gi|55380198|ref|YP_138047.1| - 0.0081 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3201 PF11447.8 gi|55380198|ref|YP_138047.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) ParE_toxin PF05016.15 gi|55380199|ref|YP_138048.1| - 0.00012 22.6 0.0 0.00016 22.2 0.0 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Gp49 PF05973.14 gi|55380199|ref|YP_138048.1| - 0.095 12.9 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) dCache_1 PF02743.18 gi|55380202|ref|YP_138051.1| - 3.2e-18 66.4 0.9 3.9e-17 62.9 0.3 2.7 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.26 gi|55380202|ref|YP_138051.1| - 3.2e-17 63.0 0.1 1.1e-16 61.3 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55380202|ref|YP_138051.1| - 1.3e-14 53.8 0.0 2e-06 27.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|55380202|ref|YP_138051.1| - 1e-12 48.2 0.0 1.4e-05 25.3 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|55380202|ref|YP_138051.1| - 1.2e-11 44.6 0.0 1.6e-08 34.5 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|55380202|ref|YP_138051.1| - 3.8e-11 43.2 0.1 1.9e-07 31.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|55380202|ref|YP_138051.1| - 1.6e-07 31.5 0.1 4.1e-06 26.9 0.0 3.3 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|55380202|ref|YP_138051.1| - 4e-07 30.4 0.1 6e-05 23.4 0.1 2.7 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|55380202|ref|YP_138051.1| - 1.7e-06 28.0 0.1 2.4e-05 24.3 0.0 2.8 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|55380202|ref|YP_138051.1| - 6.1e-06 26.1 0.0 2.3e-05 24.3 0.0 2.0 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.12 gi|55380202|ref|YP_138051.1| - 2e-05 24.8 0.0 6.5e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|55380202|ref|YP_138051.1| - 0.0025 17.8 3.2 0.0025 17.8 3.2 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|55380202|ref|YP_138051.1| - 0.0043 16.6 0.2 0.015 14.8 0.1 2.0 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|55380202|ref|YP_138051.1| - 0.005 16.5 3.3 0.0081 15.9 1.0 2.5 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain sCache_3_3 PF17202.4 gi|55380202|ref|YP_138051.1| - 0.01 16.3 0.1 0.042 14.3 0.0 2.1 2 0 0 2 2 2 1 Single cache domain 3 PadR PF03551.14 gi|55380203|ref|YP_138052.1| - 1.1e-13 50.9 0.3 1.3e-13 50.7 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55380203|ref|YP_138052.1| - 0.0015 18.4 0.1 0.002 18.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|55380203|ref|YP_138052.1| - 0.004 17.0 0.0 0.0056 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|55380203|ref|YP_138052.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|55380203|ref|YP_138052.1| - 0.026 14.4 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|55380203|ref|YP_138052.1| - 0.062 13.5 0.0 0.095 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|55380203|ref|YP_138052.1| - 0.11 12.4 0.0 3.8 7.5 0.0 2.2 2 0 0 2 2 2 0 MarR family AflR PF08493.10 gi|55380204|ref|YP_138053.1| - 0.033 13.7 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Aflatoxin regulatory protein PadR PF03551.14 gi|55380206|ref|YP_138055.1| - 3.5e-15 55.7 0.6 4.4e-15 55.4 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|55380206|ref|YP_138055.1| - 0.067 13.1 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|55380206|ref|YP_138055.1| - 0.078 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Ribosomal_S25 PF03297.15 gi|55380206|ref|YP_138055.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 S25 ribosomal protein COG2 PF06148.11 gi|55380209|ref|YP_138058.1| - 0.088 12.9 2.8 0.11 12.6 0.0 2.4 3 0 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 VWA PF00092.28 gi|55380211|ref|YP_138060.1| - 2.3e-21 76.8 2.7 5.1e-21 75.7 2.7 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|55380211|ref|YP_138060.1| - 1.2e-13 51.6 3.1 4.1e-13 49.9 1.1 2.8 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|55380211|ref|YP_138060.1| - 1.3e-07 31.3 0.5 1.3e-07 31.3 0.5 2.0 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein Dockerin_1 PF00404.18 gi|55380211|ref|YP_138060.1| - 2.9e-07 30.6 0.6 2.9e-07 30.6 0.6 3.8 3 0 0 3 3 3 1 Dockerin type I domain VWA_3 PF13768.6 gi|55380211|ref|YP_138060.1| - 5.1e-06 26.5 1.0 0.00026 21.0 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF1194 PF06707.11 gi|55380211|ref|YP_138060.1| - 2.5 7.3 6.1 0.28 10.4 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1194) Sarcoglycan_1 PF04790.13 gi|55380212|ref|YP_138061.1| - 0.045 13.1 0.3 0.079 12.3 0.3 1.5 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein DUF4366 PF14283.6 gi|55380212|ref|YP_138061.1| - 0.099 12.7 5.8 1.3 9.1 0.1 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) OTOS PF15182.6 gi|55380213|ref|YP_138062.1| - 0.019 14.9 0.0 0.021 14.8 0.0 1.3 1 1 0 1 1 1 0 Otospiralin KdpD PF02702.17 gi|55380213|ref|YP_138062.1| - 0.25 10.8 0.0 0.29 10.6 0.0 1.1 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain FANCL_C PF11793.8 gi|55380214|ref|YP_138063.1| - 0.0026 17.9 0.6 0.4 10.9 0.1 2.1 1 1 1 2 2 2 2 FANCL C-terminal domain Terminase_GpA PF05876.12 gi|55380214|ref|YP_138063.1| - 0.0091 14.6 0.5 0.0092 14.6 0.5 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-Di19 PF05605.12 gi|55380214|ref|YP_138063.1| - 0.0094 16.2 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Rubredoxin_2 PF18073.1 gi|55380214|ref|YP_138063.1| - 0.053 13.3 1.6 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin metal binding domain DiS_P_DiS PF06750.13 gi|55380214|ref|YP_138063.1| - 0.13 12.4 0.1 0.7 10.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DUF4870 PF09685.10 gi|55380215|ref|YP_138064.1| - 3.9e-09 36.6 4.9 3.9e-09 36.6 4.9 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4870) HTH_11 PF08279.12 gi|55380216|ref|YP_138065.1| - 0.012 15.6 0.5 0.027 14.4 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|55380216|ref|YP_138065.1| - 0.015 15.4 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|55380216|ref|YP_138065.1| - 0.044 13.9 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_Tnp_Tc3_2 PF01498.18 gi|55380216|ref|YP_138065.1| - 0.056 13.7 0.0 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 Transposase FUR PF01475.19 gi|55380216|ref|YP_138065.1| - 0.091 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_DeoR PF08220.12 gi|55380216|ref|YP_138065.1| - 0.11 12.2 0.9 0.26 11.1 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_WhiA PF02650.14 gi|55380216|ref|YP_138065.1| - 0.12 12.7 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 WhiA C-terminal HTH domain DUF4328 PF14219.6 gi|55380217|ref|YP_138066.1| - 0.64 9.5 5.8 3.7 7.1 5.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) DUF5326 PF17260.2 gi|55380217|ref|YP_138066.1| - 0.82 9.9 0.1 0.82 9.9 0.1 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5326) DUF4199 PF13858.6 gi|55380217|ref|YP_138066.1| - 7.8 6.9 12.1 23 5.3 12.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) DUF21 PF01595.20 gi|55380218|ref|YP_138067.1| - 4.6e-26 91.6 0.1 7.2e-26 91.0 0.1 1.3 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|55380218|ref|YP_138067.1| - 3.9e-12 46.4 0.4 6.3e-08 33.0 0.1 2.4 2 0 0 2 2 2 2 CBS domain DUF4423 PF14394.6 gi|55380219|ref|YP_138068.1| - 0.00029 20.6 0.0 0.00042 20.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF308 PF03729.13 gi|55380219|ref|YP_138068.1| - 0.00074 19.8 1.6 0.00074 19.8 1.6 2.0 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) TrmB PF01978.19 gi|55380219|ref|YP_138068.1| - 0.0031 17.4 0.1 0.014 15.3 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55380219|ref|YP_138068.1| - 0.017 14.9 0.2 0.032 14.0 0.2 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|55380219|ref|YP_138068.1| - 0.022 14.8 0.4 0.039 14.0 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|55380219|ref|YP_138068.1| - 0.023 14.6 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|55380219|ref|YP_138068.1| - 0.024 14.2 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|55380219|ref|YP_138068.1| - 0.063 13.4 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_r4 PF04545.16 gi|55380219|ref|YP_138068.1| - 0.13 11.8 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_integrase PF00589.22 gi|55380221|ref|YP_138070.1| - 1.6e-07 31.2 0.0 3.9e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family HATPase_c PF02518.26 gi|55380222|ref|YP_138071.1| - 0.00083 19.8 0.0 0.00094 19.7 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|55380223|ref|YP_138072.1| - 1.4e-146 478.3 1.7 1.4e-21 76.7 0.0 13.9 13 1 1 14 14 14 13 PAS domain PAS PF00989.25 gi|55380223|ref|YP_138072.1| - 1e-122 402.4 10.4 1.7e-13 50.5 0.0 13.5 13 0 0 13 13 13 13 PAS fold PAS_4 PF08448.10 gi|55380223|ref|YP_138072.1| - 2.6e-113 372.1 52.0 7e-14 52.0 0.2 13.8 14 0 0 14 14 13 12 PAS fold PAS_3 PF08447.12 gi|55380223|ref|YP_138072.1| - 7.5e-84 276.1 3.7 6.4e-13 48.8 0.0 13.1 13 0 0 13 13 13 9 PAS fold PAS_8 PF13188.7 gi|55380223|ref|YP_138072.1| - 3.9e-46 154.4 12.8 4.6e-06 26.5 0.0 11.4 11 0 0 11 11 11 10 PAS domain GAF_2 PF13185.6 gi|55380223|ref|YP_138072.1| - 4.9e-22 78.7 4.8 1.2e-09 38.6 0.2 4.5 3 0 0 3 3 3 3 GAF domain GAF_3 PF13492.6 gi|55380223|ref|YP_138072.1| - 4.1e-19 69.2 0.0 8.1e-09 35.9 0.0 4.4 5 0 0 5 5 3 3 GAF domain GAF PF01590.26 gi|55380223|ref|YP_138072.1| - 3.7e-12 47.0 0.1 2.3e-06 28.3 0.0 5.1 4 0 0 4 4 4 2 GAF domain PAS_10 PF13596.6 gi|55380223|ref|YP_138072.1| - 1.2e-11 45.1 0.0 0.0087 16.6 0.0 7.3 7 0 0 7 7 7 2 PAS domain HATPase_c PF02518.26 gi|55380223|ref|YP_138072.1| - 2.7e-11 44.0 0.0 1.3e-10 41.8 0.0 2.2 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.6 gi|55380223|ref|YP_138072.1| - 3e-08 33.8 0.0 0.015 15.4 0.0 5.6 7 0 0 7 7 6 2 PAS domain HATPase_c_2 PF13581.6 gi|55380223|ref|YP_138072.1| - 3.8e-07 30.1 0.3 1.3e-06 28.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|55380223|ref|YP_138072.1| - 0.00027 21.1 7.9 0.058 13.6 0.0 7.7 7 2 1 8 8 8 1 PAS fold MLTR_LBD PF17765.1 gi|55380223|ref|YP_138072.1| - 0.00078 19.6 0.1 0.44 10.6 0.0 4.0 3 0 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain HisKA PF00512.25 gi|55380223|ref|YP_138072.1| - 0.0013 18.8 1.7 0.01 15.8 0.1 3.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|55380223|ref|YP_138072.1| - 0.007 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|55380223|ref|YP_138072.1| - 0.039 13.5 0.2 0.092 12.3 0.2 1.6 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HAS-barrel PF09378.10 gi|55380223|ref|YP_138072.1| - 0.2 11.8 4.7 8 6.7 0.1 4.8 4 0 0 4 4 4 0 HAS barrel domain DDE_5 PF13546.6 gi|55380224|ref|YP_138073.1| - 2.5e-17 63.1 0.0 3.1e-17 62.8 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease AAA_28 PF13521.6 gi|55380224|ref|YP_138073.1| - 0.061 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DDE_Tnp_IS240 PF13610.6 gi|55380225|ref|YP_138074.1| - 1.2e-21 77.4 0.2 1.8e-21 76.8 0.2 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|55380225|ref|YP_138074.1| - 1.3e-06 28.1 1.7 2.7e-06 27.1 1.7 1.6 1 1 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|55380225|ref|YP_138074.1| - 0.0028 17.8 0.3 0.0051 17.0 0.2 1.5 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|55380225|ref|YP_138074.1| - 0.0093 16.0 1.4 0.2 11.7 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF2384) DnaT PF17948.1 gi|55380225|ref|YP_138074.1| - 0.033 13.9 2.2 0.063 13.0 2.2 1.5 1 0 0 1 1 1 0 DnaT DNA-binding domain ASCH PF04266.14 gi|55380226|ref|YP_138075.1| - 2.4e-07 31.3 0.0 2.8e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 ASCH domain PEP_hydrolase PF09370.10 gi|55380228|ref|YP_138077.1| - 1.2e-129 431.3 0.1 1.3e-129 431.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like Cupin_2 PF07883.11 gi|55380229|ref|YP_138078.1| - 2.6e-20 71.9 2.3 3.7e-20 71.4 2.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55380229|ref|YP_138078.1| - 1e-08 35.2 0.0 1.2e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|55380229|ref|YP_138078.1| - 1.7e-08 34.2 0.0 2.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|55380229|ref|YP_138078.1| - 1.9e-08 33.9 0.7 2.9e-08 33.3 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|55380229|ref|YP_138078.1| - 1.1e-05 25.4 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|55380229|ref|YP_138078.1| - 2.1e-05 24.6 0.0 3.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.7 gi|55380229|ref|YP_138078.1| - 0.00093 19.1 0.1 0.0013 18.6 0.1 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain ARD PF03079.14 gi|55380229|ref|YP_138078.1| - 0.0046 17.2 0.4 0.0067 16.6 0.4 1.2 1 0 0 1 1 1 1 ARD/ARD' family Pirin_C PF05726.13 gi|55380229|ref|YP_138078.1| - 0.028 14.8 0.0 0.039 14.3 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_6 PF12852.7 gi|55380229|ref|YP_138078.1| - 0.041 13.6 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Cupin GPI PF06560.11 gi|55380229|ref|YP_138078.1| - 0.058 12.7 0.2 0.1 11.9 0.2 1.5 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) EutQ PF06249.12 gi|55380229|ref|YP_138078.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DMSP_lyase PF16867.5 gi|55380229|ref|YP_138078.1| - 0.17 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase UPF0261 PF06792.11 gi|55380230|ref|YP_138079.1| - 2.7e-173 576.6 3.2 3e-173 576.4 3.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) ABC_sub_bind PF04392.12 gi|55380230|ref|YP_138079.1| - 0.14 11.3 0.1 0.26 10.5 0.1 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein DoxX_3 PF13781.6 gi|55380231|ref|YP_138080.1| - 4.5e-05 24.0 6.7 0.00023 21.7 6.7 2.1 1 1 1 2 2 2 1 DoxX-like family DUF4267 PF14087.6 gi|55380231|ref|YP_138080.1| - 0.064 13.3 6.2 0.096 12.8 6.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) DoxX PF07681.12 gi|55380231|ref|YP_138080.1| - 0.31 11.7 10.4 0.88 10.2 10.5 1.7 1 1 0 1 1 1 0 DoxX VIT1 PF01988.19 gi|55380232|ref|YP_138081.1| - 2.8e-08 33.9 4.2 3.3e-08 33.7 4.2 1.0 1 0 0 1 1 1 1 VIT family ATG22 PF11700.8 gi|55380232|ref|YP_138081.1| - 0.022 13.4 0.5 0.028 13.1 0.5 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like DUF5516 PF17637.2 gi|55380232|ref|YP_138081.1| - 0.089 12.6 0.5 0.29 10.9 0.5 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5516) ATP-synt_J PF04911.12 gi|55380232|ref|YP_138081.1| - 0.28 10.8 0.3 0.28 10.8 0.3 1.6 2 0 0 2 2 2 0 ATP synthase j chain DUF211 PF02680.14 gi|55380233|ref|YP_138082.1| - 2.9e-34 117.1 0.5 3.2e-34 116.9 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|55380233|ref|YP_138082.1| - 0.022 15.2 0.2 0.05 14.1 0.2 1.7 1 1 0 1 1 1 0 Heavy-metal-associated domain Usp PF00582.26 gi|55380234|ref|YP_138083.1| - 9.1e-62 207.7 4.5 2.3e-30 105.9 0.4 2.0 2 0 0 2 2 2 2 Universal stress protein family Glyco_hydro_97 PF10566.9 gi|55380234|ref|YP_138083.1| - 0.033 13.5 0.0 0.062 12.6 0.0 1.4 2 0 0 2 2 2 0 Glycoside hydrolase 97 Flg_bbr_C PF06429.13 gi|55380235|ref|YP_138084.1| - 0.058 13.5 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Flagellar basal body rod FlgEFG protein C-terminal NTP_transf_5 PF14907.6 gi|55380235|ref|YP_138084.1| - 0.17 11.5 0.0 0.49 10.0 0.0 1.7 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase zinc_ribbon_2 PF13240.6 gi|55380236|ref|YP_138085.1| - 0.025 14.3 3.9 0.085 12.6 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|55380236|ref|YP_138085.1| - 0.076 12.4 0.1 0.076 12.4 0.1 2.1 3 0 0 3 3 3 0 zinc-ribbon domain ATPase-cat_bd PF12156.8 gi|55380236|ref|YP_138085.1| - 0.095 13.4 0.8 0.095 13.4 0.8 1.7 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase Xlink PF00193.17 gi|55380236|ref|YP_138085.1| - 0.21 12.0 2.4 0.41 11.1 2.3 1.8 1 1 0 1 1 1 0 Extracellular link domain DUF2116 PF09889.9 gi|55380236|ref|YP_138085.1| - 0.35 10.9 0.2 0.35 10.9 0.2 2.4 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|55380236|ref|YP_138085.1| - 0.48 10.5 4.4 1.6 8.8 4.4 2.0 1 1 0 1 1 1 0 Double zinc ribbon RHS PF03527.14 gi|55380236|ref|YP_138085.1| - 0.84 9.4 2.3 0.67 9.8 0.8 1.5 2 0 0 2 2 2 0 RHS protein Pyr_redox_2 PF07992.14 gi|55380238|ref|YP_138087.1| - 1.4e-66 224.7 1.5 1.4e-66 224.7 1.5 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|55380238|ref|YP_138087.1| - 6.4e-37 126.2 1.5 1.4e-36 125.1 1.5 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|55380238|ref|YP_138087.1| - 4.1e-22 78.5 5.0 1.1e-18 67.6 0.0 3.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55380238|ref|YP_138087.1| - 2.4e-10 40.2 0.8 4.4e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55380238|ref|YP_138087.1| - 8.9e-09 34.9 3.7 1.7e-06 27.4 2.5 2.7 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|55380238|ref|YP_138087.1| - 3.7e-08 32.9 9.3 9.9e-07 28.2 1.3 3.9 3 1 0 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.6 gi|55380238|ref|YP_138087.1| - 1.5e-07 31.6 4.4 0.00064 19.9 0.8 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|55380238|ref|YP_138087.1| - 8.4e-07 28.0 4.7 0.00017 20.4 0.5 3.5 3 1 1 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.7 gi|55380238|ref|YP_138087.1| - 3.4e-06 26.7 1.2 3.4e-06 26.7 1.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|55380238|ref|YP_138087.1| - 1.4e-05 24.8 0.4 0.00096 18.8 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|55380238|ref|YP_138087.1| - 3.8e-05 23.4 9.4 0.045 13.3 1.5 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55380238|ref|YP_138087.1| - 4.2e-05 23.0 4.3 0.039 13.2 0.5 2.6 2 1 1 3 3 3 2 FAD binding domain 3HCDH_N PF02737.18 gi|55380238|ref|YP_138087.1| - 0.00038 20.4 3.8 0.0028 17.6 0.0 3.1 3 1 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|55380238|ref|YP_138087.1| - 0.00093 18.3 1.8 0.062 12.3 0.6 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|55380238|ref|YP_138087.1| - 0.00099 18.5 8.6 0.12 11.7 0.0 3.0 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|55380238|ref|YP_138087.1| - 0.0057 15.9 1.5 0.15 11.2 0.3 2.4 2 0 0 2 2 2 1 Thi4 family XdhC_C PF13478.6 gi|55380238|ref|YP_138087.1| - 0.0077 16.7 0.3 0.16 12.5 0.1 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|55380238|ref|YP_138087.1| - 0.013 14.4 0.9 0.052 12.4 0.2 2.0 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|55380238|ref|YP_138087.1| - 0.021 15.1 0.7 0.14 12.4 0.1 2.5 2 0 0 2 2 2 0 TrkA-N domain AIRS PF00586.24 gi|55380238|ref|YP_138087.1| - 0.09 13.4 0.1 0.99 10.1 0.0 2.7 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain ATPgrasp_N PF18130.1 gi|55380238|ref|YP_138087.1| - 0.22 12.1 1.4 0.49 11.0 0.2 2.3 2 0 0 2 2 1 0 ATP-grasp N-terminal domain NAD_binding_9 PF13454.6 gi|55380238|ref|YP_138087.1| - 2.7 7.9 5.0 1.2 9.1 0.2 2.8 3 1 1 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.23 gi|55380239|ref|YP_138088.1| - 7e-88 294.0 0.0 9.8e-88 293.5 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|55380239|ref|YP_138088.1| - 5.6e-23 80.6 1.1 1.2e-22 79.5 1.1 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|55380239|ref|YP_138088.1| - 2.2e-13 50.3 0.8 1.7e-08 34.7 0.5 2.5 2 0 0 2 2 2 2 e3 binding domain GCV_H PF01597.19 gi|55380239|ref|YP_138088.1| - 7.6e-05 22.6 0.5 0.00036 20.4 0.4 2.2 1 1 1 2 2 2 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|55380239|ref|YP_138088.1| - 0.004 16.9 0.5 0.004 16.9 0.5 3.2 3 1 1 4 4 4 1 Biotin-lipoyl like HlyD_3 PF13437.6 gi|55380239|ref|YP_138088.1| - 0.0091 16.7 9.0 0.022 15.5 0.5 3.6 3 1 1 4 4 4 1 HlyD family secretion protein RnfC_N PF13375.6 gi|55380239|ref|YP_138088.1| - 0.091 12.7 0.1 0.34 10.9 0.1 2.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF3614 PF12267.8 gi|55380239|ref|YP_138088.1| - 4.3 7.8 15.6 10 6.6 0.1 4.1 2 1 2 4 4 4 0 Protein of unknown function (DUF3614) Transket_pyr PF02779.24 gi|55380240|ref|YP_138089.1| - 1.1e-48 165.3 0.0 1.6e-48 164.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|55380240|ref|YP_138089.1| - 8e-35 119.4 0.0 1.6e-34 118.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|55380241|ref|YP_138090.1| - 4.6e-78 262.2 0.0 5.8e-78 261.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|55380241|ref|YP_138090.1| - 3e-06 26.6 0.0 5.2e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|55380241|ref|YP_138090.1| - 0.00052 19.8 0.1 0.0033 17.2 0.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CAF1-p150_N PF15557.6 gi|55380241|ref|YP_138090.1| - 0.013 15.5 0.3 0.019 14.9 0.3 1.2 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to PCNA ABC_tran PF00005.27 gi|55380242|ref|YP_138091.1| - 1e-28 100.5 0.0 1.6e-28 100.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55380242|ref|YP_138091.1| - 6e-13 49.3 0.2 3e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55380242|ref|YP_138091.1| - 0.00021 20.8 1.8 0.0052 16.3 1.7 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55380242|ref|YP_138091.1| - 0.0026 17.5 0.1 0.0069 16.1 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55380242|ref|YP_138091.1| - 0.0052 17.3 0.3 0.0092 16.5 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55380242|ref|YP_138091.1| - 0.0067 16.7 0.1 0.078 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|55380242|ref|YP_138091.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55380242|ref|YP_138091.1| - 0.014 15.2 0.2 0.022 14.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|55380242|ref|YP_138091.1| - 0.014 15.2 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|55380242|ref|YP_138091.1| - 0.028 14.8 0.2 0.053 13.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|55380242|ref|YP_138091.1| - 0.048 12.6 0.0 0.11 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.6 gi|55380242|ref|YP_138091.1| - 0.073 13.2 0.1 0.13 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|55380242|ref|YP_138091.1| - 0.077 13.4 0.1 1.7 9.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|55380242|ref|YP_138091.1| - 0.12 11.5 0.2 0.19 10.9 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain Spore_IV_A PF09547.10 gi|55380242|ref|YP_138091.1| - 0.15 10.9 0.1 0.22 10.4 0.1 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) SbcCD_C PF13558.6 gi|55380242|ref|YP_138091.1| - 0.4 10.9 3.1 6.2 7.1 3.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|55380243|ref|YP_138092.1| - 1e-29 103.8 0.0 1.8e-29 103.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55380243|ref|YP_138092.1| - 1.9e-11 44.3 1.0 3.8e-05 23.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|55380243|ref|YP_138092.1| - 1e-06 28.5 0.0 1.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 gi|55380243|ref|YP_138092.1| - 2.4e-05 24.0 0.2 5.7e-05 22.8 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|55380243|ref|YP_138092.1| - 3.6e-05 23.3 0.6 0.12 11.8 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|55380243|ref|YP_138092.1| - 0.00035 21.1 0.4 0.00035 21.1 0.4 1.7 1 1 0 2 2 2 1 AAA domain MukB PF04310.12 gi|55380243|ref|YP_138092.1| - 0.004 17.0 0.2 0.0092 15.8 0.1 1.5 1 1 0 1 1 1 1 MukB N-terminal AAA_15 PF13175.6 gi|55380243|ref|YP_138092.1| - 0.14 11.8 0.1 0.33 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|55380244|ref|YP_138093.1| - 1.2e-38 132.9 27.6 1.2e-38 132.9 27.6 2.0 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Cortexin PF11057.8 gi|55380244|ref|YP_138093.1| - 0.29 11.0 1.1 0.46 10.4 0.0 1.8 2 0 0 2 2 2 0 Cortexin of kidney DUF4271 PF14093.6 gi|55380244|ref|YP_138093.1| - 6.4 6.6 9.9 0.067 13.1 0.5 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4271) BPD_transp_2 PF02653.16 gi|55380245|ref|YP_138094.1| - 1.2e-34 119.8 52.7 1.2e-34 119.8 52.7 2.2 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Aminotran_1_2 PF00155.21 gi|55380246|ref|YP_138095.1| - 5.2e-60 203.5 0.0 5.8e-60 203.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|55380246|ref|YP_138095.1| - 3.7e-13 49.5 0.0 5.8e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|55380246|ref|YP_138095.1| - 2e-06 27.0 0.0 3.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|55380246|ref|YP_138095.1| - 5.6e-06 25.8 0.0 8.2e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|55380246|ref|YP_138095.1| - 5.9e-06 25.1 0.0 8.9e-06 24.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Peripla_BP_6 PF13458.6 gi|55380247|ref|YP_138096.1| - 1.6e-32 113.5 1.6 2.4e-32 113.0 1.6 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|55380247|ref|YP_138096.1| - 2.1e-20 73.2 0.0 3.7e-20 72.3 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|55380247|ref|YP_138096.1| - 0.004 16.9 0.9 0.004 16.9 0.9 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence TPP_enzyme_M PF00205.22 gi|55380249|ref|YP_138098.1| - 2.2e-37 127.9 0.7 3.8e-37 127.1 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|55380249|ref|YP_138098.1| - 5.4e-33 114.0 1.6 5e-32 110.9 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|55380249|ref|YP_138098.1| - 1.4e-32 112.6 1.7 3.3e-32 111.4 1.7 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Epimerase PF01370.21 gi|55380250|ref|YP_138099.1| - 7.2e-41 140.2 0.7 9.1e-41 139.9 0.7 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55380250|ref|YP_138099.1| - 1.7e-37 129.6 0.2 8.4e-37 127.3 0.2 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|55380250|ref|YP_138099.1| - 2.9e-19 69.1 0.0 4.4e-19 68.6 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55380250|ref|YP_138099.1| - 6.1e-13 48.5 1.0 7.6e-13 48.2 1.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|55380250|ref|YP_138099.1| - 1e-10 41.8 0.9 1.4e-10 41.3 0.1 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|55380250|ref|YP_138099.1| - 3.4e-09 36.3 0.1 0.0018 17.5 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|55380250|ref|YP_138099.1| - 6.2e-09 35.4 0.0 4.3e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|55380250|ref|YP_138099.1| - 1.4e-06 27.9 0.2 2.4e-06 27.1 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55380250|ref|YP_138099.1| - 3.3e-06 27.1 0.3 9e-06 25.7 0.3 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|55380250|ref|YP_138099.1| - 0.00053 19.6 0.4 0.0011 18.6 0.4 1.6 1 1 0 1 1 1 1 NmrA-like family UPF0146 PF03686.13 gi|55380250|ref|YP_138099.1| - 0.084 12.8 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Peptidase_M24 PF00557.24 gi|55380251|ref|YP_138100.1| - 1.2e-26 93.8 0.0 1.6e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|55380251|ref|YP_138100.1| - 8.1e-05 23.3 0.0 0.00017 22.2 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain RCC1_2 PF13540.6 gi|55380251|ref|YP_138100.1| - 0.047 13.5 0.4 0.099 12.5 0.4 1.5 1 0 0 1 1 1 0 Regulator of chromosome condensation (RCC1) repeat Bac_luciferase PF00296.20 gi|55380252|ref|YP_138101.1| - 1e-53 182.9 0.3 1.2e-53 182.6 0.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase 4HBT PF03061.22 gi|55380253|ref|YP_138102.1| - 7.1e-16 58.3 0.4 1.1e-15 57.8 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|55380253|ref|YP_138102.1| - 6.1e-07 29.6 0.0 8.5e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|55380253|ref|YP_138102.1| - 0.036 14.3 0.0 0.048 13.9 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily AMP-binding PF00501.28 gi|55380254|ref|YP_138103.1| - 7.2e-74 248.9 0.0 1.1e-73 248.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55380254|ref|YP_138103.1| - 5.2e-21 75.4 0.5 1.2e-20 74.2 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|55380254|ref|YP_138103.1| - 2.9e-10 39.9 0.1 2.9e-10 39.9 0.1 3.6 5 0 0 5 5 5 1 Acetyl-coenzyme A synthetase N-terminus Lactamase_B PF00753.27 gi|55380254|ref|YP_138103.1| - 0.17 11.8 0.1 0.17 11.8 0.1 2.3 3 0 0 3 3 3 0 Metallo-beta-lactamase superfamily F420_oxidored PF03807.17 gi|55380255|ref|YP_138104.1| - 5.3e-18 65.4 0.6 1.4e-17 64.0 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|55380255|ref|YP_138104.1| - 0.0011 19.3 0.4 0.0043 17.5 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|55380255|ref|YP_138104.1| - 0.0013 18.6 0.8 0.0022 17.9 0.8 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_Gly3P_dh_N PF01210.23 gi|55380255|ref|YP_138104.1| - 0.0015 18.5 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|55380255|ref|YP_138104.1| - 0.0087 16.0 0.3 0.017 15.0 0.3 1.4 1 0 0 1 1 1 1 KR domain PDH PF02153.17 gi|55380255|ref|YP_138104.1| - 0.0097 14.9 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Rossmann-like PF10727.9 gi|55380255|ref|YP_138104.1| - 0.015 15.2 0.3 0.037 13.9 0.3 1.6 1 0 0 1 1 1 0 Rossmann-like domain NmrA PF05368.13 gi|55380255|ref|YP_138104.1| - 0.017 14.7 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family DapB_N PF01113.20 gi|55380255|ref|YP_138104.1| - 0.079 13.1 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.18 gi|55380255|ref|YP_138104.1| - 0.092 12.6 0.3 0.3 10.9 0.3 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aldedh PF00171.22 gi|55380256|ref|YP_138105.1| - 4.2e-138 460.7 0.0 4.7e-138 460.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family EthD PF07110.11 gi|55380257|ref|YP_138106.1| - 3.6e-25 88.9 5.9 1.8e-11 45.0 0.3 3.6 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|55380257|ref|YP_138106.1| - 1e-23 83.9 1.8 2.5e-11 44.0 0.1 3.9 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase ABM PF03992.16 gi|55380257|ref|YP_138106.1| - 0.0057 16.7 0.1 4.1 7.6 0.0 2.9 2 2 0 2 2 2 2 Antibiotic biosynthesis monooxygenase PG_binding_2 PF08823.11 gi|55380257|ref|YP_138106.1| - 0.062 13.6 2.3 2.4 8.5 0.2 2.6 3 0 0 3 3 3 0 Putative peptidoglycan binding domain Styelin PF17562.2 gi|55380257|ref|YP_138106.1| - 0.11 12.9 0.1 7.6 7.0 0.0 2.6 2 0 0 2 2 2 0 Styelin baeRF_family2 PF18844.1 gi|55380257|ref|YP_138106.1| - 0.11 12.5 0.2 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 HD PF01966.22 gi|55380258|ref|YP_138107.1| - 2.1e-10 40.8 0.1 2.8e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 HD domain IclR PF01614.18 gi|55380259|ref|YP_138108.1| - 2.5e-17 62.9 0.0 1.1e-16 60.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55380259|ref|YP_138108.1| - 2.4e-15 56.0 0.3 1.9e-14 53.1 0.1 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55380259|ref|YP_138108.1| - 4.6e-08 32.5 0.0 1.1e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55380259|ref|YP_138108.1| - 7.3e-08 32.2 0.1 1.4e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55380259|ref|YP_138108.1| - 7.1e-06 26.0 0.0 3.4e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55380259|ref|YP_138108.1| - 3.1e-05 23.8 0.0 6.2e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55380259|ref|YP_138108.1| - 0.00017 21.4 0.1 0.00031 20.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|55380259|ref|YP_138108.1| - 0.00032 20.6 0.1 0.00066 19.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|55380259|ref|YP_138108.1| - 0.0009 19.5 0.1 0.0019 18.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|55380259|ref|YP_138108.1| - 0.0016 18.6 0.1 0.0031 17.7 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|55380259|ref|YP_138108.1| - 0.0019 18.0 0.0 0.006 16.4 0.0 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|55380259|ref|YP_138108.1| - 0.0067 16.2 0.0 0.018 14.8 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|55380259|ref|YP_138108.1| - 0.0075 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF742 PF05331.11 gi|55380259|ref|YP_138108.1| - 0.015 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF742) RPA_C PF08784.11 gi|55380259|ref|YP_138108.1| - 0.016 15.9 0.1 0.034 14.8 0.1 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_34 PF13601.6 gi|55380259|ref|YP_138108.1| - 0.019 15.1 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.21 gi|55380259|ref|YP_138108.1| - 0.023 14.3 0.3 0.07 12.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.11 gi|55380259|ref|YP_138108.1| - 0.033 14.2 0.0 0.087 12.9 0.0 1.7 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein HTH_Crp_2 PF13545.6 gi|55380259|ref|YP_138108.1| - 0.035 14.1 0.0 0.088 12.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_40 PF14493.6 gi|55380259|ref|YP_138108.1| - 0.05 14.1 0.0 0.14 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55380259|ref|YP_138108.1| - 0.062 13.0 0.2 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|55380259|ref|YP_138108.1| - 0.098 12.4 0.1 0.23 11.2 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ABC_tran PF00005.27 gi|55380260|ref|YP_138109.1| - 9e-32 110.5 0.0 1.6e-31 109.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55380260|ref|YP_138109.1| - 6.1e-09 36.1 3.2 3.4e-05 23.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55380260|ref|YP_138109.1| - 0.0027 17.4 0.1 0.0048 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55380260|ref|YP_138109.1| - 0.0069 16.8 0.3 0.014 15.8 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|55380260|ref|YP_138109.1| - 0.0079 15.9 1.1 0.039 13.7 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55380260|ref|YP_138109.1| - 0.0087 16.3 0.6 0.28 11.4 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|55380260|ref|YP_138109.1| - 0.011 15.3 0.1 0.22 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|55380260|ref|YP_138109.1| - 0.014 14.8 0.3 4.7 6.6 0.0 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 gi|55380260|ref|YP_138109.1| - 0.017 14.3 0.2 0.028 13.6 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|55380260|ref|YP_138109.1| - 0.02 14.2 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|55380260|ref|YP_138109.1| - 0.037 13.6 0.2 0.058 13.0 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain BCA_ABC_TP_C PF12399.8 gi|55380260|ref|YP_138109.1| - 0.038 13.9 0.1 0.08 12.9 0.1 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter MobB PF03205.14 gi|55380260|ref|YP_138109.1| - 0.06 13.2 0.5 0.63 9.9 0.2 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|55380260|ref|YP_138109.1| - 0.063 13.7 0.1 0.091 13.2 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|55380260|ref|YP_138109.1| - 0.068 13.3 0.8 0.13 12.3 0.5 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|55380260|ref|YP_138109.1| - 0.077 12.9 0.8 0.51 10.2 0.2 2.1 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 gi|55380260|ref|YP_138109.1| - 0.084 12.8 0.1 0.19 11.6 0.1 1.6 2 0 0 2 2 1 0 NACHT domain Sigma70_r1_1 PF03979.14 gi|55380260|ref|YP_138109.1| - 0.087 12.9 0.8 0.17 12.0 0.1 1.8 2 0 0 2 2 1 0 Sigma-70 factor, region 1.1 AAA_15 PF13175.6 gi|55380260|ref|YP_138109.1| - 0.093 12.4 0.3 0.16 11.7 0.1 1.4 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|55380260|ref|YP_138109.1| - 0.16 11.8 1.3 0.2 11.6 0.5 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|55380260|ref|YP_138109.1| - 0.19 12.2 0.3 0.27 11.7 0.3 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55380261|ref|YP_138110.1| - 1.6e-26 93.5 0.0 2.1e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|55380261|ref|YP_138110.1| - 1.1e-09 38.0 0.2 2.2e-09 37.0 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|55380261|ref|YP_138110.1| - 0.00031 21.3 0.0 0.00034 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55380261|ref|YP_138110.1| - 0.00093 19.0 0.2 0.0016 18.2 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|55380261|ref|YP_138110.1| - 0.0025 17.5 0.1 0.0081 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|55380261|ref|YP_138110.1| - 0.0041 16.4 0.0 0.0074 15.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.6 gi|55380261|ref|YP_138110.1| - 0.0059 16.5 1.8 0.057 13.2 0.2 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55380261|ref|YP_138110.1| - 0.036 13.5 0.1 0.048 13.1 0.1 1.4 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55380261|ref|YP_138110.1| - 0.053 13.3 0.1 0.098 12.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|55380261|ref|YP_138110.1| - 0.083 13.3 0.1 0.17 12.3 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_2 PF02653.16 gi|55380262|ref|YP_138111.1| - 2.3e-83 279.4 80.0 9.5e-48 162.7 38.1 2.2 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|55380262|ref|YP_138111.1| - 0.11 12.3 0.3 0.88 9.3 0.0 2.6 3 0 0 3 3 3 0 Cytochrome oxidase complex assembly protein 1 Pho86 PF11124.8 gi|55380262|ref|YP_138111.1| - 0.68 9.4 1.7 1.5 8.3 1.7 1.5 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 Peripla_BP_6 PF13458.6 gi|55380263|ref|YP_138112.1| - 3.2e-61 207.9 11.2 4.1e-61 207.5 11.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55380263|ref|YP_138112.1| - 9e-28 97.3 0.3 1.1e-27 97.0 0.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|55380263|ref|YP_138112.1| - 7.8e-11 41.7 0.1 1.5e-10 40.7 0.1 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|55380263|ref|YP_138112.1| - 0.002 17.9 5.4 0.0074 16.1 5.4 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55380263|ref|YP_138112.1| - 1.9 7.9 5.7 0.25 10.7 0.6 2.1 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Penicil_amidase PF01804.18 gi|55380264|ref|YP_138113.1| - 2.3e-85 288.0 3.8 2.8e-85 287.7 3.8 1.0 1 0 0 1 1 1 1 Penicillin amidase RsdA_SigD_bd PF16751.5 gi|55380264|ref|YP_138113.1| - 0.12 12.6 1.8 0.55 10.5 1.8 2.3 1 0 0 1 1 1 0 Anti-sigma-D factor RsdA to sigma factor binding region Penicil_amidase PF01804.18 gi|55380265|ref|YP_138114.1| - 2.2e-31 109.6 3.5 2.7e-31 109.3 3.5 1.1 1 0 0 1 1 1 1 Penicillin amidase TAT_signal PF10518.9 gi|55380265|ref|YP_138114.1| - 3.3e-05 23.5 0.1 3.3e-05 23.5 0.1 2.1 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence AMP-binding_C_2 PF14535.6 gi|55380266|ref|YP_138115.1| - 3.6e-22 78.5 0.0 6.5e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|55380266|ref|YP_138115.1| - 1.1e-09 37.5 0.7 2.2e-09 36.4 0.7 1.5 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|55380266|ref|YP_138115.1| - 0.0053 15.7 0.0 0.019 13.9 0.0 1.8 2 0 0 2 2 2 1 GH3 auxin-responsive promoter LuxE PF04443.12 gi|55380266|ref|YP_138115.1| - 0.11 11.5 0.0 13 4.7 0.0 2.1 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE DUF4473 PF14747.6 gi|55380266|ref|YP_138115.1| - 0.19 12.3 0.0 0.59 10.7 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) Glyoxalase_4 PF13669.6 gi|55380267|ref|YP_138116.1| - 4.4e-15 55.9 0.0 5.8e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|55380267|ref|YP_138116.1| - 9.7e-05 22.5 0.0 0.0003 21.0 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|55380267|ref|YP_138116.1| - 0.0014 18.9 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MmlI PF09448.10 gi|55380269|ref|YP_138117.1| - 3.4e-15 56.5 0.1 6.1e-14 52.5 0.1 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|55380269|ref|YP_138117.1| - 1.2e-14 55.2 4.5 3.9e-14 53.6 4.5 1.7 1 1 0 1 1 1 1 EthD domain Dabb PF07876.12 gi|55380269|ref|YP_138117.1| - 0.099 13.3 0.0 0.11 13.1 0.0 1.2 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain IclR PF01614.18 gi|55380268|ref|YP_138118.1| - 7.5e-28 96.9 0.0 1.9e-27 95.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55380268|ref|YP_138118.1| - 1.9e-10 40.3 0.1 4.1e-10 39.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|55380268|ref|YP_138118.1| - 0.00051 19.7 0.1 0.0012 18.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|55380268|ref|YP_138118.1| - 0.0061 16.4 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55380268|ref|YP_138118.1| - 0.0063 16.6 0.1 0.018 15.1 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55380268|ref|YP_138118.1| - 0.0076 16.2 0.0 0.042 13.8 0.0 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 gi|55380268|ref|YP_138118.1| - 0.0085 16.2 0.3 0.02 15.0 0.3 1.7 1 1 0 1 1 1 1 Stage III sporulation protein D MarR PF01047.22 gi|55380268|ref|YP_138118.1| - 0.034 14.1 0.1 0.086 12.8 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|55380268|ref|YP_138118.1| - 0.055 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|55380268|ref|YP_138118.1| - 0.076 13.0 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1803 PF08820.10 gi|55380268|ref|YP_138118.1| - 0.11 12.5 0.2 0.26 11.3 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) MarR_2 PF12802.7 gi|55380268|ref|YP_138118.1| - 0.15 12.0 0.0 0.53 10.2 0.0 1.9 2 0 0 2 2 2 0 MarR family ECH_1 PF00378.20 gi|55380270|ref|YP_138119.1| - 2.6e-67 226.8 0.0 2.9e-67 226.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55380270|ref|YP_138119.1| - 5.6e-38 131.3 0.0 2.9e-30 105.9 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|55380271|ref|YP_138120.1| - 1.2e-61 207.8 5.1 1.7e-61 207.3 5.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|55380271|ref|YP_138120.1| - 4.8e-32 110.4 0.1 2.1e-31 108.4 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|55380271|ref|YP_138120.1| - 1.4e-06 28.4 0.5 3.5e-06 27.1 0.5 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|55380271|ref|YP_138120.1| - 2.6e-05 23.9 0.4 5.1e-05 22.9 0.4 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|55380271|ref|YP_138120.1| - 0.00021 21.5 4.7 0.00028 21.1 2.8 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|55380271|ref|YP_138120.1| - 0.0052 17.3 8.0 0.012 16.2 4.5 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent MORN PF02493.20 gi|55380271|ref|YP_138120.1| - 0.041 13.8 0.1 0.1 12.5 0.1 1.7 1 0 0 1 1 1 0 MORN repeat NmrA PF05368.13 gi|55380271|ref|YP_138120.1| - 0.044 13.3 0.6 0.069 12.7 0.6 1.3 1 0 0 1 1 1 0 NmrA-like family AlaDh_PNT_C PF01262.21 gi|55380271|ref|YP_138120.1| - 0.059 12.6 1.6 0.54 9.5 1.8 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|55380271|ref|YP_138120.1| - 0.069 13.4 0.9 0.19 12.0 0.9 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Aldolase PF01081.19 gi|55380271|ref|YP_138120.1| - 0.74 9.2 3.4 3.1 7.2 0.1 2.2 2 0 0 2 2 2 0 KDPG and KHG aldolase Thiolase_N PF00108.23 gi|55380272|ref|YP_138121.1| - 5.4e-59 199.7 0.5 3.8e-58 196.9 0.5 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55380272|ref|YP_138121.1| - 4.2e-48 162.0 0.2 7.4e-48 161.3 0.2 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|55380272|ref|YP_138121.1| - 0.00065 19.8 0.2 0.0019 18.3 0.1 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.8 gi|55380273|ref|YP_138122.1| - 2.8e-10 39.8 3.2 1.6e-09 37.4 3.1 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|55380273|ref|YP_138122.1| - 0.0075 16.2 1.1 0.088 12.8 1.1 2.6 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|55380273|ref|YP_138122.1| - 0.02 14.2 0.7 0.065 12.6 0.1 2.0 3 0 0 3 3 3 0 Thiolase, N-terminal domain Thiolase_N PF00108.23 gi|55380274|ref|YP_138123.1| - 2.6e-24 86.0 1.3 1e-23 84.1 1.3 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55380274|ref|YP_138123.1| - 1.1e-09 37.9 0.4 3.1e-09 36.5 0.1 2.0 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|55380274|ref|YP_138123.1| - 1.4e-08 34.6 2.8 2.7e-08 33.7 2.8 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|55380274|ref|YP_138123.1| - 0.017 15.0 1.7 0.08 12.8 0.3 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMP-binding_C_2 PF14535.6 gi|55380275|ref|YP_138124.1| - 3e-20 72.3 0.0 6.1e-20 71.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|55380275|ref|YP_138124.1| - 1.8e-16 59.8 0.1 4.1e-16 58.6 0.1 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|55380275|ref|YP_138124.1| - 0.00013 21.2 0.0 0.01 14.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|55380275|ref|YP_138124.1| - 0.00068 18.6 0.0 0.004 16.1 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter 4HBT PF03061.22 gi|55380276|ref|YP_138125.1| - 5.5e-14 52.3 0.3 9.6e-14 51.5 0.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|55380276|ref|YP_138125.1| - 2.5e-09 37.4 0.1 3.2e-09 37.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|55380276|ref|YP_138125.1| - 0.011 16.1 0.2 0.013 15.8 0.2 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|55380277|ref|YP_138126.1| - 6.3e-18 64.5 0.1 7.8e-18 64.2 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55380277|ref|YP_138126.1| - 0.00018 21.6 0.5 0.00071 19.7 0.5 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Aldedh PF00171.22 gi|55380278|ref|YP_138127.1| - 6.1e-171 569.0 3.4 6.8e-171 568.8 3.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TF_Zn_Ribbon PF08271.12 gi|55380279|ref|YP_138128.1| - 0.0043 16.5 0.7 0.0043 16.5 0.7 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|55380279|ref|YP_138128.1| - 0.016 15.6 3.8 0.017 15.5 3.8 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_9 PF14369.6 gi|55380279|ref|YP_138128.1| - 0.051 13.8 3.9 0.52 10.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-ISL3 PF14690.6 gi|55380279|ref|YP_138128.1| - 0.056 14.1 5.6 0.086 13.5 5.5 1.4 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.6 gi|55380279|ref|YP_138128.1| - 0.091 13.2 5.5 4.3 7.9 2.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|55380279|ref|YP_138128.1| - 0.11 12.7 0.2 0.11 12.7 0.2 2.3 2 1 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55380279|ref|YP_138128.1| - 0.24 11.4 6.4 0.37 10.8 6.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain PSI_integrin PF17205.3 gi|55380279|ref|YP_138128.1| - 0.29 10.9 6.4 2.5 7.9 1.2 2.1 1 1 1 2 2 2 0 Integrin plexin domain FeS_assembly_P PF01883.19 gi|55380280|ref|YP_138129.1| - 1.3e-22 79.8 0.2 1.9e-22 79.2 0.2 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|55380281|ref|YP_138130.1| - 2.2e-58 197.5 1.6 2.8e-58 197.1 1.6 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|55380281|ref|YP_138130.1| - 0.004 16.9 0.4 0.01 15.6 0.4 1.8 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like GSP_synth PF03738.14 gi|55380281|ref|YP_138130.1| - 0.013 14.7 0.6 0.4 9.8 0.1 2.1 1 1 1 2 2 2 0 Glutathionylspermidine synthase preATP-grasp DUF1799 PF08809.11 gi|55380281|ref|YP_138130.1| - 0.038 14.2 0.0 0.14 12.3 0.0 2.0 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) PaaB PF06243.11 gi|55380282|ref|YP_138131.1| - 2.2e-24 85.5 0.5 3.2e-12 46.5 0.1 2.1 2 0 0 2 2 2 2 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|55380284|ref|YP_138132.1| - 2e-73 246.8 0.2 2.4e-73 246.5 0.2 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein Uteroglobin PF01099.17 gi|55380284|ref|YP_138132.1| - 0.14 12.5 0.0 0.6 10.5 0.0 2.0 2 0 0 2 2 2 0 Uteroglobin family HTH_10 PF04967.12 gi|55380283|ref|YP_138133.1| - 2e-16 59.5 0.0 3.2e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55380283|ref|YP_138133.1| - 8e-06 25.8 0.0 1.3e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 GAF and HTH_10 associated domain ECH_1 PF00378.20 gi|55380285|ref|YP_138134.1| - 9.7e-50 169.2 0.0 1.2e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55380285|ref|YP_138134.1| - 8.4e-27 94.5 0.0 1.2e-26 94.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Amidohydro_2 PF04909.14 gi|55380286|ref|YP_138135.1| - 3.1e-45 155.2 0.5 3.7e-45 155.0 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|55380286|ref|YP_138135.1| - 0.024 14.0 0.0 0.066 12.6 0.0 1.8 1 1 0 1 1 1 0 TatD related DNase HpcH_HpaI PF03328.14 gi|55380287|ref|YP_138136.1| - 5.1e-57 192.5 1.4 7.1e-57 192.1 1.4 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|55380287|ref|YP_138136.1| - 1.8e-13 50.4 0.0 5.9e-08 32.2 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PK PF00224.21 gi|55380287|ref|YP_138136.1| - 0.088 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, barrel domain Methyltransf_11 PF08241.12 gi|55380288|ref|YP_138137.1| - 3.9e-16 59.5 0.1 8e-16 58.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55380288|ref|YP_138137.1| - 5e-13 49.6 0.0 1e-12 48.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55380288|ref|YP_138137.1| - 3.1e-08 33.6 0.0 5.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55380288|ref|YP_138137.1| - 1.4e-06 28.9 0.0 1.1e-05 26.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55380288|ref|YP_138137.1| - 9e-06 25.6 0.0 1.2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55380288|ref|YP_138137.1| - 0.00033 20.1 0.0 0.00067 19.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|55380288|ref|YP_138137.1| - 0.00082 19.3 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase DREV PF05219.12 gi|55380288|ref|YP_138137.1| - 0.039 13.1 0.0 0.057 12.5 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase MaoC_dehydratas PF01575.19 gi|55380289|ref|YP_138138.1| - 9.9e-26 89.7 0.1 1.3e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55380289|ref|YP_138138.1| - 0.00038 20.6 0.2 0.00096 19.3 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Carboxyl_trans PF01039.22 gi|55380290|ref|YP_138139.1| - 7e-131 437.3 0.0 8.6e-131 437.0 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain CPSase_L_D2 PF02786.17 gi|55380291|ref|YP_138140.1| - 2.3e-75 252.8 0.3 2.3e-75 252.8 0.3 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|55380291|ref|YP_138140.1| - 2.1e-43 147.4 0.1 4e-43 146.5 0.1 1.5 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|55380291|ref|YP_138140.1| - 7.4e-37 125.8 0.0 1.6e-36 124.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|55380291|ref|YP_138140.1| - 2.9e-16 59.0 4.9 9e-16 57.5 4.4 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp PF02222.22 gi|55380291|ref|YP_138140.1| - 1.7e-09 37.5 0.2 3.6e-09 36.4 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|55380291|ref|YP_138140.1| - 7.4e-09 35.4 0.0 1.4e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|55380291|ref|YP_138140.1| - 3.5e-05 23.7 1.3 4.5e-05 23.3 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Biotin_lipoyl_2 PF13533.6 gi|55380291|ref|YP_138140.1| - 0.00011 21.9 2.9 0.0095 15.8 0.1 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp_3 PF02655.14 gi|55380291|ref|YP_138140.1| - 0.00064 19.8 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_D23 PF16576.5 gi|55380291|ref|YP_138140.1| - 0.013 14.7 0.9 3 7.0 0.1 2.5 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATPgrasp_Ter PF15632.6 gi|55380291|ref|YP_138140.1| - 0.022 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon HlyD_3 PF13437.6 gi|55380291|ref|YP_138140.1| - 0.027 15.2 0.8 7.2 7.4 0.2 3.2 2 0 0 2 2 2 0 HlyD family secretion protein ATP-grasp_5 PF13549.6 gi|55380291|ref|YP_138140.1| - 0.082 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Acyl-CoA_dh_1 PF00441.24 gi|55380292|ref|YP_138141.1| - 7.4e-29 100.9 0.5 1.1e-28 100.3 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55380292|ref|YP_138141.1| - 6.6e-23 80.7 0.0 1.5e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|55380292|ref|YP_138141.1| - 7e-23 81.5 1.8 1.3e-22 80.6 1.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55380292|ref|YP_138141.1| - 5.3e-16 59.1 0.4 9.3e-16 58.3 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|55380293|ref|YP_138142.1| - 2.6e-85 286.6 0.0 3.4e-85 286.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55380293|ref|YP_138142.1| - 7.5e-21 74.9 1.4 7.5e-21 74.9 1.4 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain UbiD PF01977.16 gi|55380294|ref|YP_138143.1| - 3.9e-21 75.4 0.2 5.6e-21 74.9 0.2 1.2 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|55380295|ref|YP_138144.1| - 1.4e-99 333.8 0.0 1.8e-99 333.4 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MDMPI_N PF11716.8 gi|55380296|ref|YP_138145.1| - 0.019 15.6 6.1 0.1 13.3 2.3 2.1 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain HTH_10 PF04967.12 gi|55380297|ref|YP_138146.1| - 4.7e-16 58.3 0.3 1.3e-15 56.9 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.6 gi|55380297|ref|YP_138146.1| - 0.00013 21.7 0.1 0.00059 19.6 0.1 2.1 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|55380297|ref|YP_138146.1| - 0.00096 19.0 0.3 0.0056 16.5 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_8 PF02954.19 gi|55380297|ref|YP_138146.1| - 0.007 16.1 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|55380297|ref|YP_138146.1| - 0.01 15.3 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55380297|ref|YP_138146.1| - 0.015 15.4 0.2 0.18 11.9 0.2 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain DUF1150 PF06620.11 gi|55380297|ref|YP_138146.1| - 0.017 15.2 2.2 3.2 7.9 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1150) HTH_psq PF05225.16 gi|55380297|ref|YP_138146.1| - 0.018 14.7 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 helix-turn-helix, Psq domain E1-E2_ATPase PF00122.20 gi|55380298|ref|YP_138147.1| - 1.4e-55 187.6 2.1 3.2e-55 186.4 2.1 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55380298|ref|YP_138147.1| - 1.4e-40 139.8 12.2 1.5e-40 139.8 9.6 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55380298|ref|YP_138147.1| - 5.7e-16 58.7 0.3 6e-15 55.4 0.0 2.8 3 0 0 3 3 3 1 Heavy-metal-associated domain HAD PF12710.7 gi|55380298|ref|YP_138147.1| - 0.00027 21.4 0.4 0.0015 19.0 0.2 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55380298|ref|YP_138147.1| - 0.0033 17.2 0.8 0.015 15.1 0.5 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF4010 PF13194.6 gi|55380299|ref|YP_138148.1| - 7.2e-67 225.1 18.4 7.2e-67 225.1 18.4 3.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|55380299|ref|YP_138148.1| - 6e-12 46.0 13.6 6e-12 46.0 13.6 3.7 2 1 1 3 3 3 1 MgtC family ABC1 PF03109.16 gi|55380300|ref|YP_138149.1| - 2.9e-20 72.6 0.0 6.5e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|55380300|ref|YP_138149.1| - 0.041 13.8 5.9 0.069 13.1 1.7 3.1 2 1 1 3 3 3 0 Phosphotransferase enzyme family HrpB1_HrpK PF09613.10 gi|55380300|ref|YP_138149.1| - 0.4 10.3 1.4 0.67 9.6 0.3 1.9 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) UCR_Fe-S_N PF10399.9 gi|55380302|ref|YP_138151.1| - 0.071 12.5 0.5 0.15 11.4 0.5 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|55380302|ref|YP_138151.1| - 0.13 12.1 0.4 0.13 12.1 0.4 1.9 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.18 gi|55380303|ref|YP_138152.1| - 3.9e-21 75.7 0.0 5.2e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF3437 PF11919.8 gi|55380303|ref|YP_138152.1| - 0.15 12.0 0.1 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) Thioredoxin PF00085.20 gi|55380304|ref|YP_138153.1| - 8.3e-26 90.0 0.0 1e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55380304|ref|YP_138153.1| - 2.1e-11 44.2 0.1 2.3e-09 37.6 0.1 2.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|55380304|ref|YP_138153.1| - 1.5e-06 28.1 0.0 2.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|55380304|ref|YP_138153.1| - 2e-05 24.8 0.0 0.022 15.1 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|55380304|ref|YP_138153.1| - 2.8e-05 24.1 0.0 3.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|55380304|ref|YP_138153.1| - 3.2e-05 23.7 0.0 3.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|55380304|ref|YP_138153.1| - 0.00018 21.9 0.0 0.00026 21.3 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.20 gi|55380304|ref|YP_138153.1| - 0.00042 20.2 1.1 0.0074 16.1 0.0 2.4 2 1 1 3 3 3 1 DSBA-like thioredoxin domain OST3_OST6 PF04756.13 gi|55380304|ref|YP_138153.1| - 0.00098 18.6 0.0 0.0013 18.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|55380304|ref|YP_138153.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|55380304|ref|YP_138153.1| - 0.0029 17.8 0.1 0.0067 16.6 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like Glutaredoxin PF00462.24 gi|55380304|ref|YP_138153.1| - 0.014 15.6 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Redoxin PF08534.10 gi|55380304|ref|YP_138153.1| - 0.024 14.3 0.1 0.33 10.7 0.0 2.0 1 1 1 2 2 2 0 Redoxin AhpC-TSA PF00578.21 gi|55380304|ref|YP_138153.1| - 0.025 14.5 0.1 0.61 10.0 0.0 2.1 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_5 PF13743.6 gi|55380304|ref|YP_138153.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.6 1 1 1 2 2 2 0 Thioredoxin DUF953 PF06110.11 gi|55380304|ref|YP_138153.1| - 0.22 11.2 0.4 2.4 7.8 0.4 2.2 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DUF2892 PF11127.8 gi|55380305|ref|YP_138154.1| - 2.6e-17 62.6 2.6 3.1e-17 62.4 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Sigma54_AID PF00309.20 gi|55380306|ref|YP_138155.1| - 0.15 12.0 0.2 0.27 11.1 0.2 1.4 1 0 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) Exotox-A_bind PF09101.10 gi|55380306|ref|YP_138155.1| - 0.19 11.1 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Exotoxin A binding Pyr_redox_2 PF07992.14 gi|55380307|ref|YP_138156.1| - 1.2e-25 90.4 0.1 6.5e-25 88.0 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|55380307|ref|YP_138156.1| - 0.00036 20.6 0.6 0.046 13.7 0.0 2.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|55380307|ref|YP_138156.1| - 0.14 12.7 0.4 6.5 7.4 0.3 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55380307|ref|YP_138156.1| - 0.28 10.4 2.2 6.2 5.9 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain TusA PF01206.17 gi|55380308|ref|YP_138157.1| - 1.8e-16 59.7 0.0 2.1e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA GATase PF00117.28 gi|55380309|ref|YP_138158.1| - 5.7e-20 71.9 0.0 7.8e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55380309|ref|YP_138158.1| - 1.1e-05 25.3 0.2 0.00018 21.3 0.2 2.6 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|55380309|ref|YP_138158.1| - 0.0019 17.8 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.16 gi|55380309|ref|YP_138158.1| - 0.023 13.6 0.1 0.054 12.4 0.1 1.5 1 1 0 1 1 1 0 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|55380309|ref|YP_138158.1| - 0.041 13.7 0.0 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 DJ-1/PfpI family DrsE_2 PF13686.6 gi|55380310|ref|YP_138159.1| - 2.9e-51 173.4 0.3 3.5e-51 173.1 0.3 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|55380310|ref|YP_138159.1| - 2.5e-07 31.1 0.1 1.6e-06 28.5 0.1 2.1 1 1 0 1 1 1 1 DsrE/DsrF-like family HSBP1 PF06825.12 gi|55380310|ref|YP_138159.1| - 1.2 9.0 5.6 0.97 9.3 0.4 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 TusA PF01206.17 gi|55380311|ref|YP_138160.1| - 1.2e-20 73.1 0.0 1.4e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|55380311|ref|YP_138160.1| - 0.014 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.27 gi|55380312|ref|YP_138161.1| - 9.5e-15 55.1 5.9 1.6e-14 54.3 5.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|55380312|ref|YP_138161.1| - 9.8e-11 42.1 0.0 1.7e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|55380312|ref|YP_138161.1| - 0.00013 21.5 0.1 0.00027 20.5 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Sulf_transp PF04143.14 gi|55380313|ref|YP_138162.1| - 2.7e-10 40.3 22.6 8.4e-10 38.7 22.6 1.6 1 1 0 1 1 1 1 Sulphur transport DUF4282 PF14110.6 gi|55380313|ref|YP_138162.1| - 6 7.7 10.3 2.6 8.8 5.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Sulf_transp PF04143.14 gi|55380314|ref|YP_138163.1| - 1.1e-08 35.1 6.9 1.1e-08 35.1 6.9 2.0 1 1 1 2 2 2 2 Sulphur transport PHO4 PF01384.20 gi|55380315|ref|YP_138164.1| - 8.9e-47 159.8 33.6 1.2e-46 159.4 33.6 1.1 1 0 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|55380316|ref|YP_138165.1| - 4.1e-35 121.3 1.1 1.5e-18 67.6 0.6 2.7 2 1 0 2 2 2 2 Universal stress protein family MAAL_C PF07476.11 gi|55380316|ref|YP_138165.1| - 0.01 15.0 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus TauE PF01925.19 gi|55380318|ref|YP_138167.1| - 2.1e-38 132.3 33.1 2.1e-38 132.3 33.1 1.5 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE HATPase_c PF02518.26 gi|55380319|ref|YP_138168.1| - 2.6e-15 56.9 0.1 1e-14 55.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55380319|ref|YP_138168.1| - 2.2e-14 53.6 0.1 2.2e-14 53.6 0.1 2.9 4 0 0 4 4 4 1 PAS fold PAS_9 PF13426.7 gi|55380319|ref|YP_138168.1| - 1.6e-12 47.6 0.0 2.4e-07 31.0 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|55380319|ref|YP_138168.1| - 5.1e-09 36.1 0.0 0.0001 22.2 0.0 3.0 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.6 gi|55380319|ref|YP_138168.1| - 6.8e-07 29.3 0.2 1.7e-06 28.0 0.2 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_2 PF13185.6 gi|55380319|ref|YP_138168.1| - 1.1e-06 29.0 0.1 3.6e-06 27.3 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|55380319|ref|YP_138168.1| - 6e-06 26.6 0.1 2.5e-05 24.6 0.0 2.1 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 gi|55380319|ref|YP_138168.1| - 6.9e-05 23.5 0.0 0.0021 18.7 0.0 2.7 2 0 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|55380319|ref|YP_138168.1| - 0.0021 18.0 0.0 0.0076 16.3 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|55380319|ref|YP_138168.1| - 0.0042 16.9 0.0 0.0091 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|55380319|ref|YP_138168.1| - 0.01 15.8 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain PAS_3 PF08447.12 gi|55380319|ref|YP_138168.1| - 0.042 14.1 0.0 3.3 8.1 0.0 3.0 2 0 0 2 2 2 0 PAS fold DASH_Duo1 PF08651.10 gi|55380319|ref|YP_138168.1| - 0.14 11.9 0.1 0.35 10.7 0.1 1.6 1 0 0 1 1 1 0 DASH complex subunit Duo1 HATPase_c PF02518.26 gi|55380320|ref|YP_138169.1| - 3.9e-17 62.8 0.0 7.2e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|55380320|ref|YP_138169.1| - 3.2e-16 59.5 0.0 8.6e-16 58.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 gi|55380320|ref|YP_138169.1| - 1.8e-09 37.6 0.0 4e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|55380320|ref|YP_138169.1| - 9.9e-07 28.6 0.0 2.2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|55380320|ref|YP_138169.1| - 0.00015 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|55380320|ref|YP_138169.1| - 0.00069 19.6 0.7 0.0025 17.8 0.0 2.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|55380320|ref|YP_138169.1| - 0.2 11.4 1.2 0.29 10.9 0.3 1.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Response_reg PF00072.24 gi|55380321|ref|YP_138170.1| - 6.5e-18 64.9 0.0 7.7e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|55380322|ref|YP_138171.1| - 6.5e-94 309.6 40.5 6e-16 58.7 0.3 10.8 11 0 0 11 11 11 10 PAS fold PAS_9 PF13426.7 gi|55380322|ref|YP_138171.1| - 8.2e-67 222.0 6.3 2.8e-11 43.6 0.0 10.8 10 0 0 10 10 10 10 PAS domain PAS_3 PF08447.12 gi|55380322|ref|YP_138171.1| - 1e-60 202.0 12.5 3.8e-22 78.4 0.2 8.4 9 0 0 9 9 9 5 PAS fold PAS PF00989.25 gi|55380322|ref|YP_138171.1| - 2.6e-60 201.4 16.2 1.2e-10 41.4 0.0 10.6 10 0 0 10 10 10 9 PAS fold PAS_8 PF13188.7 gi|55380322|ref|YP_138171.1| - 1.1e-45 152.9 17.2 7.4e-10 38.6 0.0 9.5 10 0 0 10 10 9 8 PAS domain GAF_2 PF13185.6 gi|55380322|ref|YP_138171.1| - 3.4e-30 105.1 2.9 1.7e-09 38.1 0.1 4.3 3 0 0 3 3 3 3 GAF domain HATPase_c PF02518.26 gi|55380322|ref|YP_138171.1| - 3.9e-24 85.3 0.1 9.9e-24 84.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|55380322|ref|YP_138171.1| - 7.1e-20 71.7 0.0 3.2e-06 27.5 0.0 3.8 3 0 0 3 3 3 3 GAF domain GAF PF01590.26 gi|55380322|ref|YP_138171.1| - 2.6e-17 63.7 0.0 3e-06 27.9 0.0 3.9 3 0 0 3 3 3 3 GAF domain HisKA PF00512.25 gi|55380322|ref|YP_138171.1| - 1.6e-08 34.4 12.4 1.8e-08 34.3 0.4 4.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|55380322|ref|YP_138171.1| - 1.3e-07 31.8 11.7 0.76 10.0 0.1 8.9 8 3 1 9 9 9 2 PAS fold PAS_10 PF13596.6 gi|55380322|ref|YP_138171.1| - 1.5e-05 25.5 0.0 1.6 9.4 0.0 5.5 5 0 0 5 5 5 2 PAS domain HATPase_c_3 PF13589.6 gi|55380322|ref|YP_138171.1| - 0.00027 20.8 0.0 0.00066 19.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|55380322|ref|YP_138171.1| - 0.0049 16.7 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_11 PF14598.6 gi|55380322|ref|YP_138171.1| - 0.0059 16.7 0.0 9.9 6.3 0.0 4.7 6 0 0 6 6 5 1 PAS domain CCB2_CCB4 PF11152.8 gi|55380322|ref|YP_138171.1| - 0.02 14.2 0.0 0.065 12.5 0.0 1.9 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 HxlR PF01638.17 gi|55380323|ref|YP_138172.1| - 7.2e-22 77.0 0.0 3e-21 75.0 0.0 2.0 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.24 gi|55380323|ref|YP_138172.1| - 5e-20 71.7 0.5 9.2e-20 70.9 0.5 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|55380323|ref|YP_138172.1| - 4.1e-14 52.6 8.9 4.1e-14 52.6 8.9 4.0 5 0 0 5 5 5 1 HalX domain PadR PF03551.14 gi|55380323|ref|YP_138172.1| - 0.0025 17.7 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|55380323|ref|YP_138172.1| - 0.01 15.9 0.1 0.023 14.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ATP-grasp_4 PF13535.6 gi|55380323|ref|YP_138172.1| - 0.012 15.2 0.0 0.9 9.1 0.0 2.3 2 0 0 2 2 2 0 ATP-grasp domain DDE_Tnp_1 PF01609.21 gi|55380325|ref|YP_138174.1| - 7.8e-31 107.4 0.3 1e-30 107.0 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|55380325|ref|YP_138174.1| - 0.011 14.0 0.1 0.024 12.9 0.0 1.5 1 1 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_2 PF04693.12 gi|55380325|ref|YP_138174.1| - 0.091 12.0 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DUF21 PF01595.20 gi|55380326|ref|YP_138175.1| - 4.4e-36 124.2 0.2 6.7e-36 123.6 0.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|55380326|ref|YP_138175.1| - 7e-06 26.4 1.3 0.0011 19.4 0.0 2.4 2 0 0 2 2 2 2 CBS domain F420_ligase PF01996.16 gi|55380327|ref|YP_138176.1| - 0.071 12.4 0.0 0.082 12.2 0.0 1.1 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Porin_3 PF01459.22 gi|55380328|ref|YP_138177.1| - 0.057 12.9 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic porin DUF3403 PF11883.8 gi|55380328|ref|YP_138177.1| - 0.16 12.1 0.1 0.31 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3403) AI-2E_transport PF01594.16 gi|55380329|ref|YP_138178.1| - 8.5e-41 140.2 21.2 1e-40 139.9 21.2 1.1 1 0 0 1 1 1 1 AI-2E family transporter OB_aCoA_assoc PF01796.17 gi|55380330|ref|YP_138179.1| - 6.5e-18 64.5 1.1 1e-17 63.9 1.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|55380330|ref|YP_138179.1| - 1.8e-13 50.0 2.4 4.3e-13 48.9 2.4 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|55380331|ref|YP_138180.1| - 6.4e-23 81.4 0.8 4.4e-22 78.7 0.8 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55380331|ref|YP_138180.1| - 2.9e-07 30.1 0.6 7.3e-07 28.9 0.6 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|55380331|ref|YP_138180.1| - 0.0001 22.0 0.5 0.0001 22.0 0.5 2.1 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|55380331|ref|YP_138180.1| - 0.022 14.6 3.3 2.4 8.1 0.2 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF3160 PF11369.8 gi|55380331|ref|YP_138180.1| - 0.034 12.6 0.1 0.064 11.7 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3160) Peptidase_M20 PF01546.28 gi|55380331|ref|YP_138180.1| - 0.16 11.7 0.9 0.39 10.4 0.1 2.0 2 1 0 2 2 2 0 Peptidase family M20/M25/M40 Oxidored_FMN PF00724.20 gi|55380332|ref|YP_138181.1| - 1.5e-63 215.2 0.0 1.7e-63 215.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|55380332|ref|YP_138181.1| - 0.00052 19.5 0.0 0.00088 18.8 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|55380332|ref|YP_138181.1| - 0.014 14.6 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Adenine_deam_C PF13382.6 gi|55380332|ref|YP_138181.1| - 0.052 12.9 0.0 0.097 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain SBP_bac_8 PF13416.6 gi|55380333|ref|YP_138182.1| - 7.8e-39 134.2 0.7 9.4e-39 133.9 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55380333|ref|YP_138182.1| - 1e-26 94.6 0.3 1.4e-26 94.3 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|55380333|ref|YP_138182.1| - 0.005 16.3 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55380333|ref|YP_138182.1| - 0.0059 16.4 2.4 0.014 15.2 2.4 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.6 gi|55380333|ref|YP_138182.1| - 0.042 13.6 0.1 0.26 11.0 0.0 2.2 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein BamHI PF02923.15 gi|55380333|ref|YP_138182.1| - 0.17 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease BamHI BPD_transp_1 PF00528.22 gi|55380334|ref|YP_138183.1| - 7.1e-13 48.7 17.0 7.1e-13 48.7 17.0 2.5 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Baculo_11_kDa PF06143.11 gi|55380334|ref|YP_138183.1| - 0.64 9.6 0.1 0.64 9.6 0.1 2.5 2 0 0 2 2 2 0 Baculovirus 11 kDa family BPD_transp_1 PF00528.22 gi|55380335|ref|YP_138184.1| - 5.2e-12 45.9 17.2 5.2e-12 45.9 17.2 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.6 gi|55380335|ref|YP_138184.1| - 0.084 13.1 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 IS66 C-terminal element ABC_tran PF00005.27 gi|55380336|ref|YP_138185.1| - 7.8e-32 110.6 0.0 1.2e-31 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|55380336|ref|YP_138185.1| - 2.9e-13 49.8 0.1 1.7e-12 47.3 0.0 2.3 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|55380336|ref|YP_138185.1| - 1.1e-09 39.0 0.5 1e-08 35.8 0.1 3.0 4 0 0 4 4 4 1 MalK OB fold domain AAA_21 PF13304.6 gi|55380336|ref|YP_138185.1| - 4.8e-08 33.2 0.0 0.0023 17.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|55380336|ref|YP_138185.1| - 1.9e-07 31.3 0.0 9.9e-07 29.0 0.0 2.3 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|55380336|ref|YP_138185.1| - 0.00017 21.1 0.0 0.00051 19.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|55380336|ref|YP_138185.1| - 0.0021 18.6 2.8 0.037 14.6 0.0 3.7 4 0 0 4 4 3 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 gi|55380336|ref|YP_138185.1| - 0.0028 18.1 0.9 0.0098 16.3 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55380336|ref|YP_138185.1| - 0.0046 17.2 0.1 0.0086 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|55380336|ref|YP_138185.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|55380336|ref|YP_138185.1| - 0.037 13.7 0.0 0.085 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|55380336|ref|YP_138185.1| - 0.051 13.1 0.1 0.33 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|55380336|ref|YP_138185.1| - 0.052 13.5 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|55380336|ref|YP_138185.1| - 0.064 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|55380336|ref|YP_138185.1| - 0.19 11.5 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GDPD PF03009.17 gi|55380337|ref|YP_138186.1| - 6.6e-22 78.5 0.0 2e-21 76.9 0.0 1.8 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PEP_hydrolase PF09370.10 gi|55380337|ref|YP_138186.1| - 0.0042 16.3 0.0 0.012 14.9 0.0 1.6 2 0 0 2 2 2 1 Phosphoenolpyruvate hydrolase-like GDPD_2 PF13653.6 gi|55380337|ref|YP_138186.1| - 0.014 15.8 0.0 0.12 12.9 0.0 2.3 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Hydrolase_6 PF13344.6 gi|55380338|ref|YP_138187.1| - 3.3e-26 91.3 0.0 5.8e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55380338|ref|YP_138187.1| - 1.1e-21 76.7 0.2 7.7e-21 73.9 0.0 2.3 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|55380338|ref|YP_138187.1| - 1.9e-14 54.4 0.1 2.5e-14 54.1 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|55380338|ref|YP_138187.1| - 1.2e-07 32.0 0.0 1e-05 25.7 0.0 2.4 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|55380338|ref|YP_138187.1| - 0.00028 20.5 0.1 0.0017 18.0 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|55380338|ref|YP_138187.1| - 0.041 13.6 0.2 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4010 PF13194.6 gi|55380339|ref|YP_138188.1| - 1.7e-51 174.9 20.1 1.7e-51 174.9 20.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|55380339|ref|YP_138188.1| - 3.7e-22 79.0 11.3 3.7e-22 79.0 11.3 3.5 2 1 1 3 3 3 1 MgtC family Phosphonate-bd PF12974.7 gi|55380340|ref|YP_138189.1| - 4.1e-60 203.4 0.0 5.5e-60 203.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|55380340|ref|YP_138189.1| - 0.0039 17.0 0.2 0.0076 16.0 0.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1 PF09084.11 gi|55380340|ref|YP_138189.1| - 0.0067 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|55380340|ref|YP_138189.1| - 0.016 14.6 0.0 0.062 12.7 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ABC_tran PF00005.27 gi|55380341|ref|YP_138190.1| - 2.9e-37 128.2 0.0 4e-37 127.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55380341|ref|YP_138190.1| - 2.1e-06 27.7 0.4 0.045 13.6 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|55380341|ref|YP_138190.1| - 9.4e-06 25.9 0.1 0.0002 21.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55380341|ref|YP_138190.1| - 5e-05 23.0 0.0 9.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55380341|ref|YP_138190.1| - 0.00012 22.0 0.1 0.00055 19.9 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|55380341|ref|YP_138190.1| - 0.00013 22.4 0.3 0.00023 21.6 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|55380341|ref|YP_138190.1| - 0.00067 19.2 0.1 0.33 10.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|55380341|ref|YP_138190.1| - 0.00079 19.2 0.1 0.00099 18.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|55380341|ref|YP_138190.1| - 0.00081 19.6 0.0 0.0014 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|55380341|ref|YP_138190.1| - 0.0013 19.2 0.0 0.0021 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|55380341|ref|YP_138190.1| - 0.014 15.9 0.0 0.028 15.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|55380341|ref|YP_138190.1| - 0.016 14.6 0.1 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|55380341|ref|YP_138190.1| - 0.016 15.1 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|55380341|ref|YP_138190.1| - 0.021 14.8 0.0 0.2 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|55380341|ref|YP_138190.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|55380341|ref|YP_138190.1| - 0.022 14.8 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|55380341|ref|YP_138190.1| - 0.029 14.4 0.5 0.24 11.5 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|55380341|ref|YP_138190.1| - 0.037 13.4 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|55380341|ref|YP_138190.1| - 0.047 13.4 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55380341|ref|YP_138190.1| - 0.081 13.2 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|55380341|ref|YP_138190.1| - 0.085 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|55380341|ref|YP_138190.1| - 0.091 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|55380341|ref|YP_138190.1| - 0.096 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Cytidylate_kin PF02224.18 gi|55380341|ref|YP_138190.1| - 0.097 12.4 0.0 0.32 10.7 0.1 1.8 2 0 0 2 2 2 0 Cytidylate kinase AAA_27 PF13514.6 gi|55380341|ref|YP_138190.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|55380341|ref|YP_138190.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|55380341|ref|YP_138190.1| - 0.15 12.3 0.2 1.7 8.9 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_PrkA PF08298.11 gi|55380341|ref|YP_138190.1| - 0.16 10.8 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain AAA PF00004.29 gi|55380341|ref|YP_138190.1| - 0.17 12.3 0.2 1.1 9.7 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|55380341|ref|YP_138190.1| - 0.19 11.7 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 gi|55380341|ref|YP_138190.1| - 0.25 11.0 0.0 0.71 9.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain G-alpha PF00503.20 gi|55380341|ref|YP_138190.1| - 0.26 10.4 0.0 0.27 10.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|55380342|ref|YP_138191.1| - 8.5e-16 58.2 7.6 8.5e-16 58.2 7.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55380343|ref|YP_138192.1| - 2e-15 57.0 16.9 2e-15 57.0 16.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Usp PF00582.26 gi|55380344|ref|YP_138193.1| - 5.5e-08 33.4 0.6 9e-08 32.7 0.6 1.4 1 1 0 1 1 1 1 Universal stress protein family Secretin_N PF03958.17 gi|55380344|ref|YP_138193.1| - 0.037 14.4 0.1 0.062 13.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain FAD_binding_3 PF01494.19 gi|55380345|ref|YP_138194.1| - 6.7e-10 38.7 2.7 7.3e-08 32.0 2.7 2.9 1 1 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|55380345|ref|YP_138194.1| - 0.0015 17.9 0.7 0.014 14.7 0.1 2.2 1 1 1 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55380345|ref|YP_138194.1| - 0.036 14.3 0.1 4.2 7.7 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Tubulin PF00091.25 gi|55380346|ref|YP_138195.1| - 3.2e-28 99.3 0.0 7.6e-28 98.1 0.0 1.6 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|55380346|ref|YP_138195.1| - 2.5e-07 30.2 1.2 0.00016 21.0 0.2 2.6 1 1 2 3 3 3 2 Tubulin like PASTA PF03793.19 gi|55380346|ref|YP_138195.1| - 0.011 15.6 0.5 0.13 12.1 0.2 2.3 2 0 0 2 2 2 0 PASTA domain 5_nucleotid_C PF02872.18 gi|55380347|ref|YP_138196.1| - 6.8e-30 104.4 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|55380347|ref|YP_138196.1| - 0.0016 19.0 0.2 0.0045 17.5 0.2 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|55380347|ref|YP_138196.1| - 0.004 17.4 1.2 0.013 15.7 1.2 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|55380347|ref|YP_138196.1| - 0.066 12.5 0.3 0.11 11.8 0.3 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily GrpB PF04229.14 gi|55380348|ref|YP_138197.1| - 2e-48 164.6 0.7 2.2e-48 164.5 0.7 1.0 1 0 0 1 1 1 1 GrpB protein MHB PF16525.5 gi|55380348|ref|YP_138197.1| - 0.022 15.0 0.1 0.044 14.0 0.1 1.4 1 0 0 1 1 1 0 Haemophore, haem-binding ScsC_N PF18312.1 gi|55380348|ref|YP_138197.1| - 0.046 13.5 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain Glyco_transf_34 PF05637.12 gi|55380348|ref|YP_138197.1| - 0.14 11.9 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 galactosyl transferase GMA12/MNN10 family Multi_Drug_Res PF00893.19 gi|55380349|ref|YP_138198.1| - 0.015 16.0 1.7 0.017 15.8 1.7 1.0 1 0 0 1 1 1 0 Small Multidrug Resistance protein IgaA PF07095.11 gi|55380349|ref|YP_138198.1| - 0.047 11.7 0.7 0.046 11.7 0.7 1.0 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA Methyltransf_15 PF09445.10 gi|55380351|ref|YP_138200.1| - 0.082 12.5 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AAA_31 PF13614.6 gi|55380354|ref|YP_138203.1| - 6.8e-20 71.7 0.0 1.4e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55380354|ref|YP_138203.1| - 2.6e-13 50.2 0.0 3.9e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|55380354|ref|YP_138203.1| - 0.00027 20.3 0.0 0.0051 16.1 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|55380354|ref|YP_138203.1| - 0.00059 19.4 0.1 0.00098 18.6 0.1 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|55380354|ref|YP_138203.1| - 0.00073 19.1 0.1 0.0089 15.5 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|55380354|ref|YP_138203.1| - 0.0024 17.1 0.0 0.0038 16.4 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|55380354|ref|YP_138203.1| - 0.17 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family XAP5 PF04921.14 gi|55380355|ref|YP_138204.1| - 0.11 12.3 4.2 0.13 12.0 4.2 1.2 1 0 0 1 1 1 0 XAP5, circadian clock regulator # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006397.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006397.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006397.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006397.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:18:25 2019 # [ok]