# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BPL_LplA_LipB PF03099.14 gi|55376943|ref|YP_134793.1| - 1.2e-22 80.2 0.0 1.8e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|55376943|ref|YP_134793.1| - 4.3e-11 42.2 0.0 9.1e-11 41.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|55376943|ref|YP_134793.1| - 7.6e-11 41.5 0.0 2.4e-10 39.9 0.0 1.9 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|55376943|ref|YP_134793.1| - 2.4e-06 26.8 0.0 4.5e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|55376943|ref|YP_134793.1| - 1.6e-05 24.6 0.0 3.5e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55376943|ref|YP_134793.1| - 5.1e-05 22.8 0.0 8.3e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|55376943|ref|YP_134793.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|55376943|ref|YP_134793.1| - 0.018 14.6 0.0 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|55376943|ref|YP_134793.1| - 0.038 13.5 0.2 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|55376943|ref|YP_134793.1| - 0.071 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1702 PF08012.6 gi|55376943|ref|YP_134793.1| - 0.093 11.3 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) HTH_39 PF14090.1 gi|55376943|ref|YP_134793.1| - 0.12 11.8 0.0 0.7 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|55376943|ref|YP_134793.1| - 0.13 12.0 1.6 0.56 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family CPSase_L_D2 PF02786.12 gi|55376944|ref|YP_134794.1| - 2.3e-68 229.6 0.1 5.6e-68 228.3 0.1 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|55376944|ref|YP_134794.1| - 1.1e-41 141.3 0.1 2.6e-41 140.1 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|55376944|ref|YP_134794.1| - 1.1e-32 112.2 0.0 2.6e-32 111.0 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|55376944|ref|YP_134794.1| - 4.5e-19 67.8 4.2 4.5e-19 67.8 2.9 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|55376944|ref|YP_134794.1| - 9.5e-14 51.5 0.2 2.1e-13 50.4 0.2 1.6 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|55376944|ref|YP_134794.1| - 1.7e-13 50.0 0.2 7.2e-08 31.9 0.0 3.0 1 1 1 2 2 2 2 Biotin-lipoyl like ATPgrasp_Ter PF15632.1 gi|55376944|ref|YP_134794.1| - 9.2e-11 41.0 0.0 1.3e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon HlyD PF00529.15 gi|55376944|ref|YP_134794.1| - 1.8e-06 27.4 0.8 0.00022 20.6 0.1 2.5 1 1 1 2 2 2 1 HlyD family secretion protein ATP-grasp PF02222.17 gi|55376944|ref|YP_134794.1| - 4.4e-06 26.1 0.0 1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|55376944|ref|YP_134794.1| - 9.6e-06 25.2 0.0 1.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_2 PF12700.2 gi|55376944|ref|YP_134794.1| - 7.3e-05 22.0 0.7 0.0023 17.1 0.1 2.3 1 1 1 2 2 2 1 HlyD family secretion protein Dala_Dala_lig_C PF07478.8 gi|55376944|ref|YP_134794.1| - 0.00029 20.2 0.1 0.0008 18.8 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus HlyD_3 PF13437.1 gi|55376944|ref|YP_134794.1| - 0.00053 20.2 0.4 0.58 10.5 0.0 2.9 3 0 0 3 3 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|55376944|ref|YP_134794.1| - 0.0036 16.9 1.5 0.011 15.3 1.0 1.8 1 0 0 1 1 1 1 Glycine cleavage H-protein RimK PF08443.6 gi|55376944|ref|YP_134794.1| - 0.0084 15.5 0.0 0.37 10.2 0.0 2.3 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Glyco_trans_1_2 PF13524.1 gi|55376944|ref|YP_134794.1| - 0.0093 16.2 0.1 64 3.9 0.0 4.2 4 0 0 4 4 4 0 Glycosyl transferases group 1 QRPTase_N PF02749.11 gi|55376944|ref|YP_134794.1| - 0.066 13.0 0.7 0.82 9.5 0.2 2.6 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_EIIA_1 PF00358.15 gi|55376944|ref|YP_134794.1| - 0.12 11.9 1.7 0.35 10.4 0.1 2.5 3 1 1 4 4 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MR_MLE_C PF13378.1 gi|55376945|ref|YP_134795.1| - 0.015 15.2 0.4 0.017 15.0 0.3 1.2 1 0 0 1 1 1 0 Enolase C-terminal domain-like L-fibroin PF05849.6 gi|55376945|ref|YP_134795.1| - 2.7 7.2 6.9 3 7.1 4.8 1.1 1 0 0 1 1 1 0 Fibroin light chain (L-fibroin) Carboxyl_trans PF01039.17 gi|55376946|ref|YP_134796.1| - 1.7e-185 617.1 0.2 1.9e-185 616.9 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|55376946|ref|YP_134796.1| - 0.0026 17.0 0.1 0.018 14.2 0.0 2.0 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) MarR_2 PF12802.2 gi|55376948|ref|YP_134798.1| - 2.3e-06 27.1 1.2 3.8e-06 26.4 0.2 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|55376948|ref|YP_134798.1| - 3.8e-05 23.2 0.0 0.0001 21.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|55376948|ref|YP_134798.1| - 0.00019 21.0 0.0 0.00036 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55376948|ref|YP_134798.1| - 0.0014 18.1 1.1 0.0028 17.1 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|55376948|ref|YP_134798.1| - 0.0018 18.0 0.8 0.048 13.4 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376948|ref|YP_134798.1| - 0.0025 17.1 0.0 0.006 15.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.14 gi|55376948|ref|YP_134798.1| - 0.0056 16.5 0.1 0.024 14.5 0.0 2.0 2 0 0 2 2 2 1 Trp repressor protein HTH_27 PF13463.1 gi|55376948|ref|YP_134798.1| - 0.011 16.0 0.0 0.027 14.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|55376948|ref|YP_134798.1| - 0.015 15.3 0.1 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|55376948|ref|YP_134798.1| - 0.019 14.5 0.0 0.062 12.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain FeoA PF04023.9 gi|55376948|ref|YP_134798.1| - 0.066 13.1 0.5 0.25 11.3 0.2 2.1 2 1 0 2 2 2 0 FeoA domain DUF1724 PF08350.5 gi|55376948|ref|YP_134798.1| - 0.14 11.6 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) EamA PF00892.15 gi|55376949|ref|YP_134799.1| - 3.9e-32 110.9 33.5 2.7e-17 62.9 5.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|55376949|ref|YP_134799.1| - 1.7e-09 37.8 4.1 1.7e-09 37.8 2.8 3.6 1 1 3 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|55376949|ref|YP_134799.1| - 0.0015 18.2 20.2 0.0062 16.1 1.8 2.4 2 1 0 2 2 2 2 Triose-phosphate Transporter family SNF PF00209.13 gi|55376951|ref|YP_134801.1| - 4.7e-49 167.2 35.2 6.4e-25 87.6 12.3 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short PF00106.20 gi|55376952|ref|YP_134802.1| - 1.8e-24 86.5 0.2 2.9e-24 85.8 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55376952|ref|YP_134802.1| - 2e-17 63.8 0.0 1.8e-16 60.6 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55376952|ref|YP_134802.1| - 1.1e-07 31.6 0.2 2.5e-07 30.5 0.1 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55376952|ref|YP_134802.1| - 2.9e-07 30.1 0.2 5.1e-07 29.3 0.0 1.7 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55376952|ref|YP_134802.1| - 0.02 14.8 0.6 0.033 14.2 0.4 1.5 1 1 0 1 1 1 0 NADH(P)-binding ADH_zinc_N PF00107.21 gi|55376953|ref|YP_134803.1| - 9.6e-16 57.5 0.4 1.6e-15 56.7 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55376953|ref|YP_134803.1| - 3.8e-14 53.6 3.0 4.4e-14 53.4 0.5 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55376953|ref|YP_134803.1| - 1.3e-11 44.1 0.0 3.3e-09 36.4 0.0 2.4 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain adh_short PF00106.20 gi|55376953|ref|YP_134803.1| - 0.041 13.7 3.9 0.28 11.1 0.3 2.3 2 0 0 2 2 2 0 short chain dehydrogenase Gly_rich_SFCGS PF14272.1 gi|55376953|ref|YP_134803.1| - 0.1 12.5 0.6 0.28 11.0 0.4 1.7 1 0 0 1 1 1 0 Glycine-rich SFCGS MCPsignal PF00015.16 gi|55376954|ref|YP_134804.1| - 9.9e-52 175.5 63.8 1.1e-51 175.4 20.4 3.8 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55376954|ref|YP_134804.1| - 4.6e-13 49.1 1.3 4.6e-13 49.1 0.9 5.7 5 1 0 5 5 5 2 HAMP domain CorA PF01544.13 gi|55376954|ref|YP_134804.1| - 0.0029 16.6 1.4 0.0029 16.6 1.0 4.2 4 1 1 5 5 5 1 CorA-like Mg2+ transporter protein PspB PF06667.7 gi|55376954|ref|YP_134804.1| - 0.013 15.4 2.4 0.55 10.1 0.2 3.6 2 0 0 2 2 2 0 Phage shock protein B DUF3584 PF12128.3 gi|55376954|ref|YP_134804.1| - 0.014 12.7 30.6 0.023 12.0 21.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Cache_3 PF14827.1 gi|55376954|ref|YP_134804.1| - 0.041 13.7 0.0 0.041 13.7 0.0 3.9 4 1 0 4 4 2 0 Sensory domain of two-component sensor kinase Syntaxin PF00804.20 gi|55376954|ref|YP_134804.1| - 0.077 13.1 0.2 0.077 13.1 0.1 5.4 2 1 1 4 4 2 0 Syntaxin Erp_C PF06780.6 gi|55376954|ref|YP_134804.1| - 0.12 12.2 9.0 0.12 12.2 0.5 3.7 2 2 1 4 4 4 0 Erp protein C-terminus DUF948 PF06103.6 gi|55376954|ref|YP_134804.1| - 0.14 11.9 40.2 0.16 11.8 0.9 6.5 4 2 3 7 7 6 0 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|55376954|ref|YP_134804.1| - 0.35 9.2 35.2 1.8 6.9 3.7 2.9 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|55376954|ref|YP_134804.1| - 0.4 10.4 28.1 2.3 8.0 2.2 5.8 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) LOH1CR12 PF10158.4 gi|55376954|ref|YP_134804.1| - 0.52 10.1 12.6 0.54 10.0 0.7 4.2 2 2 3 5 5 5 0 Tumour suppressor protein YojJ PF10372.4 gi|55376954|ref|YP_134804.1| - 1 9.2 5.6 2.4 8.1 0.1 3.6 3 1 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus Fib_alpha PF08702.5 gi|55376954|ref|YP_134804.1| - 2.1 8.4 21.9 3.8 7.6 1.0 5.2 2 1 2 5 5 5 0 Fibrinogen alpha/beta chain family TMP_2 PF06791.8 gi|55376954|ref|YP_134804.1| - 4.6 6.7 39.3 0.045 13.3 6.0 3.9 1 1 2 3 3 3 0 Prophage tail length tape measure protein Bac_rhodopsin PF01036.13 gi|55376955|ref|YP_134805.1| - 4.7e-64 215.7 26.3 5.4e-64 215.5 18.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TMEM238 PF15125.1 gi|55376956|ref|YP_134806.1| - 9.6 6.2 9.6 3.9 7.4 4.8 1.7 1 1 1 2 2 2 0 TMEM238 protein family TFIIB PF00382.14 gi|55376957|ref|YP_134807.1| - 4.4e-50 167.3 2.2 1.5e-25 88.8 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55376957|ref|YP_134807.1| - 1.4e-14 53.1 3.9 2.6e-14 52.2 2.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|55376957|ref|YP_134807.1| - 0.0025 17.3 0.1 0.0094 15.5 0.0 1.9 2 0 0 2 2 2 1 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|55376957|ref|YP_134807.1| - 0.017 14.7 3.2 0.017 14.7 0.8 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|55376957|ref|YP_134807.1| - 0.033 13.3 0.6 0.055 12.6 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_23 PF13384.1 gi|55376957|ref|YP_134807.1| - 0.048 13.3 0.5 0.59 9.8 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|55376957|ref|YP_134807.1| - 0.059 12.6 1.0 0.3 10.4 0.0 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 DUF2318 PF10080.4 gi|55376957|ref|YP_134807.1| - 0.1 12.3 0.2 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Cyclin_C PF02984.14 gi|55376957|ref|YP_134807.1| - 0.15 11.9 0.1 8.8 6.2 0.0 2.3 1 1 1 2 2 2 0 Cyclin, C-terminal domain SpoU_methylase PF00588.14 gi|55376959|ref|YP_134809.1| - 4.4e-28 97.9 0.0 6e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family PAS_4 PF08448.5 gi|55376960|ref|YP_134810.1| - 3.2e-22 78.6 0.9 4.6e-13 49.1 0.1 3.4 3 0 0 3 3 3 2 PAS fold HTH_10 PF04967.7 gi|55376960|ref|YP_134810.1| - 1.4e-18 66.1 0.1 4.1e-18 64.7 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|55376960|ref|YP_134810.1| - 4e-16 59.2 0.2 3.7e-08 33.5 0.0 3.3 3 0 0 3 3 3 2 GAF domain GAF_2 PF13185.1 gi|55376960|ref|YP_134810.1| - 1.5e-14 54.7 0.5 2.6e-07 31.2 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|55376960|ref|YP_134810.1| - 7.3e-14 52.0 0.0 4.1e-09 36.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|55376960|ref|YP_134810.1| - 2.8e-13 50.2 4.4 3.8e-09 36.8 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|55376960|ref|YP_134810.1| - 4.1e-08 33.0 0.0 3.9e-06 26.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.1 gi|55376960|ref|YP_134810.1| - 0.0011 19.1 0.0 0.045 14.0 0.0 2.6 2 0 0 2 2 2 1 PAS domain HTH_20 PF12840.2 gi|55376960|ref|YP_134810.1| - 0.0043 16.8 0.2 0.022 14.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|55376960|ref|YP_134810.1| - 0.0062 16.0 0.0 0.021 14.4 0.0 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|55376960|ref|YP_134810.1| - 0.017 14.4 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3895 PF13034.1 gi|55376962|ref|YP_134812.1| - 0.091 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) IstB_IS21_ATP PF08483.6 gi|55376962|ref|YP_134812.1| - 0.13 11.9 0.5 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding N-terminal GatB_N PF02934.10 gi|55376963|ref|YP_134813.1| - 3.5e-71 239.4 0.0 5.1e-71 238.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|55376963|ref|YP_134813.1| - 2.2e-21 76.0 0.0 4.1e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|55376963|ref|YP_134813.1| - 2.9e-14 52.9 0.0 5.4e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|55376963|ref|YP_134813.1| - 0.0059 16.4 0.2 0.011 15.6 0.2 1.4 1 0 0 1 1 1 1 Yqey-like protein Acetyltransf_1 PF00583.19 gi|55376966|ref|YP_134816.1| - 2.9e-19 68.8 0.2 4.2e-19 68.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55376966|ref|YP_134816.1| - 1.8e-16 60.2 0.1 2.3e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55376966|ref|YP_134816.1| - 6.2e-14 51.9 0.1 9e-14 51.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55376966|ref|YP_134816.1| - 1.6e-13 50.9 0.0 1.8e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55376966|ref|YP_134816.1| - 2.5e-10 39.9 0.0 3.9e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|55376966|ref|YP_134816.1| - 5.6e-08 32.6 0.1 1.1e-07 31.7 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|55376966|ref|YP_134816.1| - 4.3e-06 26.9 0.0 4.8e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55376966|ref|YP_134816.1| - 3.6e-05 23.6 0.1 5.2e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|55376966|ref|YP_134816.1| - 6.7e-05 22.8 0.2 8.3e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|55376966|ref|YP_134816.1| - 0.0027 17.3 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55376966|ref|YP_134816.1| - 0.0048 16.7 0.0 0.0081 16.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|55376966|ref|YP_134816.1| - 0.024 14.3 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|55376966|ref|YP_134816.1| - 0.041 13.1 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Mec-17 PF05301.6 gi|55376966|ref|YP_134816.1| - 0.095 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 Lyase_1 PF00206.15 gi|55376967|ref|YP_134817.1| - 1.7e-106 355.9 0.0 2.5e-106 355.3 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|55376967|ref|YP_134817.1| - 1e-24 86.3 0.2 2.9e-24 84.8 0.1 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus ADSL_C PF10397.4 gi|55376967|ref|YP_134817.1| - 0.014 15.3 0.1 0.08 12.9 0.1 2.4 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus BPD_transp_1 PF00528.17 gi|55376968|ref|YP_134818.1| - 1.1e-18 67.4 21.3 1.1e-18 67.4 14.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55376969|ref|YP_134819.1| - 5.7e-13 48.7 17.8 5.7e-13 48.7 12.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3956 PF13104.1 gi|55376969|ref|YP_134819.1| - 9.3 5.9 7.1 1.6 8.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3956) ABC_tran PF00005.22 gi|55376970|ref|YP_134820.1| - 4.8e-34 117.5 0.0 8.9e-34 116.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376970|ref|YP_134820.1| - 6.6e-08 32.8 0.0 0.0039 17.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|55376970|ref|YP_134820.1| - 5.3e-07 29.5 0.0 1.4e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|55376970|ref|YP_134820.1| - 0.00017 20.8 0.1 0.0009 18.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|55376970|ref|YP_134820.1| - 0.00033 19.8 0.0 0.0011 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|55376970|ref|YP_134820.1| - 0.00092 19.2 0.1 0.0017 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55376970|ref|YP_134820.1| - 0.0015 18.7 0.1 0.0035 17.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55376970|ref|YP_134820.1| - 0.0016 17.6 0.0 0.0057 15.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|55376970|ref|YP_134820.1| - 0.0043 17.8 0.2 0.011 16.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|55376970|ref|YP_134820.1| - 0.01 14.5 0.0 0.018 13.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|55376970|ref|YP_134820.1| - 0.015 14.6 0.0 0.13 11.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|55376970|ref|YP_134820.1| - 0.016 14.6 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|55376970|ref|YP_134820.1| - 0.026 14.0 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|55376970|ref|YP_134820.1| - 0.034 14.3 0.0 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|55376970|ref|YP_134820.1| - 0.048 13.7 0.0 1.6 8.9 0.0 3.1 3 1 0 3 3 3 0 TOBE domain AAA_33 PF13671.1 gi|55376970|ref|YP_134820.1| - 0.061 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|55376970|ref|YP_134820.1| - 0.082 13.2 0.1 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|55376970|ref|YP_134820.1| - 0.1 12.3 0.1 0.73 9.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|55376970|ref|YP_134820.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain PRK PF00485.13 gi|55376970|ref|YP_134820.1| - 0.11 12.0 0.1 2.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family XPG_I PF00867.13 gi|55376971|ref|YP_134821.1| - 1.4e-22 79.5 0.0 2.7e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|55376971|ref|YP_134821.1| - 1.3e-12 47.8 0.0 2e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|55376971|ref|YP_134821.1| - 1.5e-05 25.1 0.0 3.4e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|55376971|ref|YP_134821.1| - 0.00038 19.8 0.0 0.00075 18.9 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain HHH_5 PF14520.1 gi|55376971|ref|YP_134821.1| - 0.097 12.8 0.3 0.97 9.6 0.0 2.6 2 1 1 3 3 3 0 Helix-hairpin-helix domain Acetyltransf_1 PF00583.19 gi|55376972|ref|YP_134822.1| - 2.6e-06 27.3 0.0 4.2e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55376972|ref|YP_134822.1| - 0.0053 16.8 0.0 0.0075 16.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3054 PF11255.3 gi|55376973|ref|YP_134823.1| - 9.2e-26 89.8 11.2 1.1e-25 89.6 7.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CoA_binding_3 PF13727.1 gi|55376973|ref|YP_134823.1| - 1.3 8.8 3.8 1.9 8.3 2.6 1.3 1 0 0 1 1 1 0 CoA-binding domain IncA PF04156.9 gi|55376975|ref|YP_134825.1| - 0.18 11.3 7.2 0.24 10.9 5.0 1.1 1 0 0 1 1 1 0 IncA protein PetG PF02529.10 gi|55376975|ref|YP_134825.1| - 1.1 8.8 3.7 0.31 10.5 0.5 1.7 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 OCD_Mu_crystall PF02423.10 gi|55376976|ref|YP_134826.1| - 3.6e-61 206.6 2.0 4.9e-61 206.2 1.4 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|55376976|ref|YP_134826.1| - 0.001 19.4 0.3 0.0023 18.3 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|55376976|ref|YP_134826.1| - 0.0011 19.0 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|55376976|ref|YP_134826.1| - 0.018 14.8 0.1 0.032 14.0 0.1 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1119 PF06550.6 gi|55376977|ref|YP_134827.1| - 3e-88 295.6 13.5 4.4e-88 295.0 9.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Presenilin PF01080.12 gi|55376977|ref|YP_134827.1| - 0.00011 21.1 5.1 0.11 11.3 0.0 2.3 2 1 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.8 gi|55376977|ref|YP_134827.1| - 0.0007 19.1 9.0 0.07 12.5 2.7 2.8 2 1 0 2 2 2 2 Signal peptide peptidase Gar1 PF04410.9 gi|55376978|ref|YP_134828.1| - 5.6e-07 29.1 0.0 5.8e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|55376979|ref|YP_134829.1| - 1.5e-27 96.0 0.0 1.7e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein ATP-grasp PF02222.17 gi|55376979|ref|YP_134829.1| - 0.016 14.5 0.1 0.022 14.0 0.0 1.3 1 1 0 1 1 1 0 ATP-grasp domain CAP PF00188.21 gi|55376980|ref|YP_134830.1| - 1.8e-06 28.4 0.0 3.4e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family DUF3408 PF11888.3 gi|55376980|ref|YP_134830.1| - 0.12 12.3 1.6 0.27 11.1 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3408) Alpha_GJ PF03229.8 gi|55376980|ref|YP_134830.1| - 0.93 9.8 7.0 1.4 9.2 4.9 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J COX2 PF00116.15 gi|55376981|ref|YP_134831.1| - 2.1e-21 75.9 0.0 5.7e-21 74.5 0.0 1.8 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|55376981|ref|YP_134831.1| - 7.4e-09 35.4 0.3 1.1e-08 34.8 0.2 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF1772 PF08592.6 gi|55376981|ref|YP_134831.1| - 0.0082 15.8 3.9 0.0089 15.7 2.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1772) Cupredoxin_1 PF13473.1 gi|55376981|ref|YP_134831.1| - 0.024 14.5 0.0 0.052 13.4 0.0 1.7 1 1 0 1 1 1 0 Cupredoxin-like domain TrbC PF04956.8 gi|55376981|ref|YP_134831.1| - 0.99 9.4 3.8 1.4 8.9 0.7 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family UbiA PF01040.13 gi|55376982|ref|YP_134832.1| - 1.3e-31 109.7 25.5 1.3e-31 109.7 17.7 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|55376982|ref|YP_134832.1| - 3.7e-19 68.7 10.5 3.7e-19 68.7 7.3 3.4 2 1 0 2 2 2 1 Cytochrome oxidase assembly protein DGF-1_5 PF11038.3 gi|55376983|ref|YP_134833.1| - 0.033 13.4 6.1 0.052 12.7 4.2 1.3 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 5 Rdx PF10262.4 gi|55376984|ref|YP_134834.1| - 6.3e-17 61.3 0.0 6.9e-17 61.2 0.0 1.0 1 0 0 1 1 1 1 Rdx family zf-FPG_IleRS PF06827.9 gi|55376985|ref|YP_134835.1| - 0.02 14.5 2.7 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|55376985|ref|YP_134835.1| - 0.027 14.2 1.2 0.036 13.8 0.8 1.3 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.17 gi|55376985|ref|YP_134835.1| - 0.063 13.0 1.0 0.091 12.5 0.7 1.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) ADK_lid PF05191.9 gi|55376985|ref|YP_134835.1| - 0.64 9.7 2.7 16 5.2 2.3 2.0 1 1 1 2 2 2 0 Adenylate kinase, active site lid ABC_tran PF00005.22 gi|55376986|ref|YP_134836.1| - 4e-30 104.9 0.0 5.9e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376986|ref|YP_134836.1| - 5.7e-17 62.6 0.0 2e-10 41.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|55376986|ref|YP_134836.1| - 1.4e-05 24.5 0.2 0.11 11.8 0.1 2.5 2 1 1 3 3 3 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|55376986|ref|YP_134836.1| - 3.4e-05 23.8 0.1 6e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|55376986|ref|YP_134836.1| - 3.5e-05 23.4 3.0 5.6e-05 22.7 0.2 2.6 2 1 1 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|55376986|ref|YP_134836.1| - 5.4e-05 22.4 0.0 0.018 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain UPF0079 PF02367.12 gi|55376986|ref|YP_134836.1| - 0.00016 21.2 0.4 0.00029 20.4 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|55376986|ref|YP_134836.1| - 0.0002 21.3 0.1 0.00031 20.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55376986|ref|YP_134836.1| - 0.00041 19.6 0.0 0.11 11.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55376986|ref|YP_134836.1| - 0.00068 19.1 0.6 0.0014 18.0 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|55376986|ref|YP_134836.1| - 0.001 19.1 0.0 0.0021 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|55376986|ref|YP_134836.1| - 0.0015 18.8 0.0 0.0021 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55376986|ref|YP_134836.1| - 0.004 16.3 0.0 0.0067 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|55376986|ref|YP_134836.1| - 0.0043 16.9 0.0 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|55376986|ref|YP_134836.1| - 0.007 16.3 0.0 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|55376986|ref|YP_134836.1| - 0.011 15.9 0.1 0.036 14.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|55376986|ref|YP_134836.1| - 0.016 15.1 0.0 0.12 12.3 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|55376986|ref|YP_134836.1| - 0.027 14.1 0.7 0.11 12.1 0.1 2.1 2 1 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|55376986|ref|YP_134836.1| - 0.029 13.7 2.4 0.077 12.3 0.2 2.3 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|55376986|ref|YP_134836.1| - 0.031 13.9 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|55376986|ref|YP_134836.1| - 0.036 13.1 0.0 0.071 12.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|55376986|ref|YP_134836.1| - 0.042 13.2 0.3 0.08 12.3 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|55376986|ref|YP_134836.1| - 0.05 14.4 0.5 0.15 12.8 0.3 1.8 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|55376986|ref|YP_134836.1| - 0.061 13.0 0.3 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|55376986|ref|YP_134836.1| - 0.075 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|55376986|ref|YP_134836.1| - 0.078 12.8 0.0 0.33 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|55376986|ref|YP_134836.1| - 0.084 12.3 0.5 0.16 11.4 0.4 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AFG1_ATPase PF03969.11 gi|55376986|ref|YP_134836.1| - 0.088 11.6 0.2 0.39 9.4 0.0 1.8 2 0 0 2 2 2 0 AFG1-like ATPase FtsK_SpoIIIE PF01580.13 gi|55376986|ref|YP_134836.1| - 0.097 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|55376986|ref|YP_134836.1| - 0.1 13.1 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|55376986|ref|YP_134836.1| - 0.15 11.5 0.1 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|55376986|ref|YP_134836.1| - 0.16 11.2 0.1 0.26 10.5 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B Arch_ATPase PF01637.13 gi|55376986|ref|YP_134836.1| - 0.19 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_PrkA PF08298.6 gi|55376986|ref|YP_134836.1| - 0.22 10.1 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain ABC_ATPase PF09818.4 gi|55376986|ref|YP_134836.1| - 0.42 9.1 1.2 1.5 7.3 0.4 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC2_membrane PF01061.19 gi|55376987|ref|YP_134837.1| - 3.8e-23 81.7 10.9 4.9e-23 81.3 7.6 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|55376987|ref|YP_134837.1| - 3.8e-12 45.9 3.3 3.8e-12 45.9 2.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|55376987|ref|YP_134837.1| - 1.9e-07 30.2 3.6 1.9e-07 30.2 2.5 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|55376987|ref|YP_134837.1| - 1.1e-06 28.0 8.7 1.8e-06 27.3 6.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|55376987|ref|YP_134837.1| - 0.0053 15.5 0.5 0.0068 15.2 0.3 1.1 1 0 0 1 1 1 1 Predicted permease (DUF2074) DSPc PF00782.15 gi|55376988|ref|YP_134838.1| - 1.3e-09 37.6 0.0 1.7e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|55376988|ref|YP_134838.1| - 7.9e-05 22.1 0.0 9.8e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|55376988|ref|YP_134838.1| - 0.0037 17.3 0.0 0.0048 16.9 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.1 gi|55376988|ref|YP_134838.1| - 0.015 15.5 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family Amidohydro_2 PF04909.9 gi|55376988|ref|YP_134838.1| - 0.023 14.2 0.4 0.023 14.2 0.3 1.2 1 0 0 1 1 1 0 Amidohydrolase CDKN3 PF05706.7 gi|55376988|ref|YP_134838.1| - 0.04 13.3 0.0 0.16 11.4 0.0 1.8 1 1 1 2 2 2 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) UPF0052 PF01933.13 gi|55376989|ref|YP_134839.1| - 5.5e-43 147.4 0.0 7.7e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|55376990|ref|YP_134840.1| - 1e-08 34.3 1.0 7.5e-08 31.5 0.7 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|55376990|ref|YP_134840.1| - 0.011 14.9 0.0 0.023 13.9 0.0 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein DUF1633 PF07794.6 gi|55376990|ref|YP_134840.1| - 0.034 12.1 3.2 0.038 11.9 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) PcrB PF01884.12 gi|55376990|ref|YP_134840.1| - 0.079 12.1 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 PcrB family IGPS PF00218.16 gi|55376990|ref|YP_134840.1| - 0.12 11.3 0.0 0.27 10.2 0.0 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase CitG PF01874.11 gi|55376991|ref|YP_134841.1| - 3.9e-48 164.0 0.3 4.3e-48 163.9 0.2 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|55376992|ref|YP_134842.1| - 1.3e-43 148.6 0.0 1.4e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|55376993|ref|YP_134843.1| - 2.7e-16 59.4 0.0 3e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 ParA PF10609.4 gi|55376994|ref|YP_134844.1| - 1.7e-34 117.5 0.0 3.7e-34 116.4 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|55376994|ref|YP_134844.1| - 3.1e-20 72.4 0.0 4.4e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|55376994|ref|YP_134844.1| - 1.7e-12 47.1 0.9 2.8e-12 46.4 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|55376994|ref|YP_134844.1| - 4.1e-08 33.3 0.0 2.1e-07 31.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|55376994|ref|YP_134844.1| - 6.4e-08 31.9 0.0 1.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|55376994|ref|YP_134844.1| - 2.6e-05 23.5 0.0 0.011 14.8 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|55376994|ref|YP_134844.1| - 0.00017 20.7 0.0 0.00025 20.1 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|55376994|ref|YP_134844.1| - 0.0015 17.6 1.8 0.0015 17.6 1.2 2.0 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|55376994|ref|YP_134844.1| - 0.0052 16.4 0.0 3.9 7.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|55376994|ref|YP_134844.1| - 0.0067 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55376994|ref|YP_134844.1| - 0.041 14.6 0.0 0.089 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|55376994|ref|YP_134844.1| - 0.12 12.1 1.4 9.7 6.0 0.3 2.5 2 0 0 2 2 2 0 Part of AAA domain APS_kinase PF01583.15 gi|55376994|ref|YP_134844.1| - 0.13 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Ribosomal_S13 PF00416.17 gi|55376996|ref|YP_134846.1| - 6.6e-38 129.4 3.6 8.4e-38 129.1 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|55376996|ref|YP_134846.1| - 0.0014 17.2 0.0 0.0014 17.2 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.20 gi|55376997|ref|YP_134847.1| - 1.6e-12 46.6 0.2 7.8e-12 44.4 0.0 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|55376997|ref|YP_134847.1| - 0.00084 19.6 0.5 0.0041 17.4 0.3 2.0 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|55376998|ref|YP_134848.1| - 3e-44 149.6 0.3 3.8e-44 149.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.17 gi|55376998|ref|YP_134848.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L18p/L5e family RNA_pol_A_bac PF01000.21 gi|55376999|ref|YP_134849.1| - 2.3e-19 69.5 0.0 9.7e-19 67.5 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|55376999|ref|YP_134849.1| - 2.8e-12 45.5 0.0 3.5e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|55377000|ref|YP_134850.1| - 7.3e-13 49.0 0.1 9.3e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 BPS PF08947.5 gi|55377000|ref|YP_134850.1| - 0.013 15.0 0.1 0.031 13.8 0.1 1.6 1 0 0 1 1 1 0 BPS (Between PH and SH2) Ribosomal_L13 PF00572.13 gi|55377001|ref|YP_134851.1| - 4.7e-20 71.9 0.0 6.3e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|55377002|ref|YP_134852.1| - 3e-35 121.0 0.0 3.4e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|55377003|ref|YP_134853.1| - 3.7e-28 97.3 0.2 4.1e-28 97.1 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.17 gi|55377004|ref|YP_134854.1| - 7.4e-18 64.0 0.0 8e-18 63.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|55377005|ref|YP_134855.1| - 1.1e-72 244.5 1.5 1.6e-72 244.0 1.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|55377005|ref|YP_134855.1| - 1e-36 125.7 0.3 2.2e-36 124.7 0.2 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|55377005|ref|YP_134855.1| - 7.4e-05 21.7 0.3 0.00012 21.0 0.2 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus SUKH-4 PF14435.1 gi|55377005|ref|YP_134855.1| - 0.00082 19.1 0.2 0.0015 18.3 0.1 1.3 1 0 0 1 1 1 1 SUKH-4 immunity protein MR_MLE PF01188.16 gi|55377005|ref|YP_134855.1| - 0.0021 18.5 0.1 0.0063 17.0 0.0 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|55377005|ref|YP_134855.1| - 0.0021 17.9 0.2 0.0069 16.3 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like Ribosomal_S2 PF00318.15 gi|55377006|ref|YP_134856.1| - 2.8e-36 124.7 0.0 2.6e-18 66.0 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 DUF1510 PF07423.6 gi|55377006|ref|YP_134856.1| - 1.6 8.0 7.2 2.5 7.3 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SDA1 PF05285.7 gi|55377006|ref|YP_134856.1| - 2.6 7.2 10.7 3.2 6.9 7.4 1.1 1 0 0 1 1 1 0 SDA1 DUF21 PF01595.15 gi|55377007|ref|YP_134857.1| - 0.12 11.5 4.3 0.18 11.0 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF21 ABC2_membrane_4 PF12730.2 gi|55377007|ref|YP_134857.1| - 0.78 8.8 13.4 0.99 8.5 9.3 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein p450 PF00067.17 gi|55377009|ref|YP_134859.1| - 2.8e-99 332.7 0.0 3.3e-99 332.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PAS_9 PF13426.1 gi|55377011|ref|YP_134861.1| - 1.7e-50 169.7 1.0 1.2e-26 93.0 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|55377011|ref|YP_134861.1| - 1.2e-36 125.1 4.0 1.9e-12 47.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|55377011|ref|YP_134861.1| - 1.8e-26 92.0 0.3 9.8e-11 41.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|55377011|ref|YP_134861.1| - 7.5e-20 70.7 0.1 2.3e-19 69.1 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55377011|ref|YP_134861.1| - 2.1e-18 65.4 2.0 1.1e-07 31.4 0.0 4.0 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|55377011|ref|YP_134861.1| - 1.6e-15 57.0 0.0 5.9e-15 55.2 0.0 2.0 2 0 0 2 2 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55377011|ref|YP_134861.1| - 9.4e-15 54.3 1.7 9.4e-15 54.3 1.1 3.7 5 0 0 5 5 4 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|55377011|ref|YP_134861.1| - 6.2e-14 51.8 0.3 1.1e-10 41.5 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|55377011|ref|YP_134861.1| - 9.6e-06 25.5 1.9 0.044 13.7 0.1 4.8 2 2 2 4 4 4 1 PAS fold PAS_10 PF13596.1 gi|55377011|ref|YP_134861.1| - 3.3e-05 24.0 0.0 0.45 10.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.1 gi|55377011|ref|YP_134861.1| - 0.0017 17.9 0.0 0.0042 16.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UME PF08064.8 gi|55377011|ref|YP_134861.1| - 0.049 13.5 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 1 0 UME (NUC010) domain DivIC PF04977.10 gi|55377011|ref|YP_134861.1| - 0.18 11.3 2.1 2.6 7.5 0.9 2.7 2 0 0 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|55377011|ref|YP_134861.1| - 1.1 8.8 8.9 0.53 9.8 1.8 2.9 3 0 0 3 3 3 0 IncA protein GHMP_kinases_N PF00288.21 gi|55377012|ref|YP_134862.1| - 6.7e-15 54.9 2.8 9.9e-15 54.3 1.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|55377012|ref|YP_134862.1| - 2e-14 53.5 0.3 2e-14 53.5 0.2 2.6 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|55377012|ref|YP_134862.1| - 9.3e-05 21.6 0.0 0.0006 19.0 0.0 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|55377013|ref|YP_134863.1| - 4.7e-37 127.8 3.7 5.9e-37 127.4 2.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3561 PF12084.3 gi|55377013|ref|YP_134863.1| - 0.064 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B PF00753.22 gi|55377015|ref|YP_134865.1| - 6.6e-13 48.7 1.7 1.2e-12 47.9 0.7 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55377015|ref|YP_134865.1| - 7.3e-07 28.9 0.7 3.7e-06 26.6 0.1 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|55377015|ref|YP_134865.1| - 0.00023 20.9 0.8 0.00063 19.5 0.1 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DUF1413 PF07205.6 gi|55377015|ref|YP_134865.1| - 0.0061 16.0 0.2 0.1 12.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1413) polyprenyl_synt PF00348.12 gi|55377016|ref|YP_134866.1| - 1.9e-60 203.9 1.0 2.6e-60 203.4 0.7 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase VCBS PF13517.1 gi|55377017|ref|YP_134867.1| - 5e-05 23.5 5.0 0.009 16.3 0.1 3.7 4 1 1 5 5 5 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Cuticle_1 PF08140.6 gi|55377017|ref|YP_134867.1| - 0.043 13.6 0.1 0.18 11.6 0.0 2.1 1 0 0 1 1 1 0 Crustacean cuticle protein repeat ArsA_ATPase PF02374.10 gi|55377018|ref|YP_134868.1| - 4.7e-49 167.0 0.0 5.1e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|55377018|ref|YP_134868.1| - 0.0044 16.8 0.1 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like tRNA-synt_1c PF00749.16 gi|55377019|ref|YP_134869.1| - 1.3e-57 194.8 0.0 1.6e-57 194.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|55377019|ref|YP_134869.1| - 1.6e-14 53.9 0.0 1e-13 51.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain EGF PF00008.22 gi|55377019|ref|YP_134869.1| - 0.052 13.5 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 EGF-like domain tRNA-synt_1d PF00750.14 gi|55377019|ref|YP_134869.1| - 0.091 11.5 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) PAS_9 PF13426.1 gi|55377020|ref|YP_134870.1| - 1.5e-33 115.2 0.1 4.4e-16 59.1 0.0 4.5 3 2 0 3 3 3 3 PAS domain PAS PF00989.19 gi|55377020|ref|YP_134870.1| - 8e-32 109.3 0.2 1.8e-15 56.7 0.0 5.0 3 2 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|55377020|ref|YP_134870.1| - 2.5e-30 104.7 10.6 8.6e-15 54.7 0.4 5.3 4 2 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|55377020|ref|YP_134870.1| - 3.2e-21 74.4 0.1 1.2e-06 28.1 0.0 4.1 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|55377020|ref|YP_134870.1| - 2e-19 69.3 0.0 4.1e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|55377020|ref|YP_134870.1| - 6e-11 42.3 0.2 0.00063 19.7 0.0 5.4 4 2 0 4 4 4 3 PAS fold HisKA PF00512.20 gi|55377020|ref|YP_134870.1| - 7.3e-11 41.8 1.3 2e-10 40.4 0.9 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|55377020|ref|YP_134870.1| - 1.1e-08 35.2 0.0 2.9e-05 24.2 0.0 3.3 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.6 gi|55377020|ref|YP_134870.1| - 0.0032 17.5 0.0 0.011 15.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|55377020|ref|YP_134870.1| - 0.046 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HSP20 PF00011.16 gi|55377021|ref|YP_134871.1| - 1.2e-16 60.4 0.0 2.4e-16 59.4 0.0 1.5 2 0 0 2 2 2 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|55377021|ref|YP_134871.1| - 0.013 15.0 0.0 0.014 14.8 0.0 1.0 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Abhydrolase_3 PF07859.8 gi|55377022|ref|YP_134872.1| - 1.3e-20 73.8 1.1 2e-20 73.3 0.8 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|55377022|ref|YP_134872.1| - 3.4e-15 55.8 0.0 1.7e-14 53.5 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|55377022|ref|YP_134872.1| - 5e-15 55.5 0.9 7.1e-15 55.0 0.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|55377022|ref|YP_134872.1| - 7.3e-09 34.8 0.0 1.3e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.2 gi|55377022|ref|YP_134872.1| - 2.3e-07 30.9 9.8 1.1e-06 28.7 6.8 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|55377022|ref|YP_134872.1| - 0.013 15.3 0.3 0.028 14.3 0.1 1.5 1 1 0 1 1 1 0 TAP-like protein FSH1 PF03959.8 gi|55377022|ref|YP_134872.1| - 0.02 14.3 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|55377022|ref|YP_134872.1| - 0.056 12.9 0.0 0.53 9.8 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|55377022|ref|YP_134872.1| - 0.13 11.6 0.0 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF1749 PF08538.5 gi|55377022|ref|YP_134872.1| - 0.14 11.0 0.0 1.5 7.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Fer4_7 PF12838.2 gi|55377023|ref|YP_134873.1| - 5.4e-13 49.0 23.0 1.8e-08 34.5 4.7 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55377023|ref|YP_134873.1| - 2.1e-12 46.0 14.5 8.1e-08 31.5 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|55377023|ref|YP_134873.1| - 3.9e-10 39.8 5.7 5.5e-10 39.3 4.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55377023|ref|YP_134873.1| - 8.4e-09 34.9 15.9 2.7e-06 27.0 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|55377023|ref|YP_134873.1| - 5.4e-08 32.5 7.5 8.4e-08 31.9 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55377023|ref|YP_134873.1| - 9e-08 31.8 19.2 3.8e-05 23.4 6.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|55377023|ref|YP_134873.1| - 2.6e-07 30.5 9.4 3.7e-06 26.8 3.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55377023|ref|YP_134873.1| - 6.1e-07 28.9 10.5 0.0004 20.1 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|55377023|ref|YP_134873.1| - 1.8e-06 28.1 0.7 0.029 14.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55377023|ref|YP_134873.1| - 2.4e-06 27.8 2.9 0.00048 20.4 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55377023|ref|YP_134873.1| - 3e-06 27.8 6.5 7.9e-05 23.3 0.7 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|55377023|ref|YP_134873.1| - 2.4e-05 24.2 9.2 0.00037 20.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|55377023|ref|YP_134873.1| - 0.0018 18.6 15.6 0.0086 16.4 10.8 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|55377023|ref|YP_134873.1| - 0.0019 18.6 12.9 0.0026 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55377023|ref|YP_134873.1| - 0.021 15.3 17.2 0.77 10.3 11.8 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain ETF PF01012.16 gi|55377024|ref|YP_134874.1| - 4.5e-31 107.7 0.0 6.9e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|55377025|ref|YP_134875.1| - 3.2e-21 74.7 0.1 7.2e-21 73.6 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|55377025|ref|YP_134875.1| - 1.7e-16 60.3 0.0 4.2e-16 59.0 0.0 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein domain FAD_binding_3 PF01494.14 gi|55377026|ref|YP_134876.1| - 1.1e-09 37.8 2.7 4.1e-09 35.9 1.9 1.9 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|55377026|ref|YP_134876.1| - 1.3e-09 37.4 8.6 1.1e-05 24.5 0.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|55377026|ref|YP_134876.1| - 1.7e-08 33.9 1.1 2.6e-08 33.4 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55377026|ref|YP_134876.1| - 2.1e-05 24.5 0.3 0.00019 21.4 0.2 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55377026|ref|YP_134876.1| - 2.6e-05 24.1 0.7 0.00011 22.1 0.5 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|55377026|ref|YP_134876.1| - 4.3e-05 22.7 0.5 8.6e-05 21.7 0.3 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|55377026|ref|YP_134876.1| - 0.004 15.6 3.4 0.0059 15.1 0.9 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|55377026|ref|YP_134876.1| - 0.0096 14.8 12.1 0.0098 14.7 3.1 2.5 2 1 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|55377026|ref|YP_134876.1| - 0.015 14.2 4.5 0.1 11.4 2.1 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|55377026|ref|YP_134876.1| - 0.019 14.8 0.3 0.043 13.6 0.2 1.6 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.1 gi|55377026|ref|YP_134876.1| - 0.066 13.2 0.5 0.14 12.2 0.4 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|55377026|ref|YP_134876.1| - 0.17 11.6 1.2 0.32 10.8 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|55377026|ref|YP_134876.1| - 1.3 9.4 3.9 22 5.5 0.9 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_4 PF13420.1 gi|55377028|ref|YP_134878.1| - 8.5e-15 55.0 0.0 1.2e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55377028|ref|YP_134878.1| - 8.9e-13 48.0 0.0 1.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55377028|ref|YP_134878.1| - 6.1e-09 36.0 0.0 9.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|55377028|ref|YP_134878.1| - 2e-07 31.2 0.0 2.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55377028|ref|YP_134878.1| - 3.5e-07 30.2 0.0 6.5e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55377028|ref|YP_134878.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.1 gi|55377028|ref|YP_134878.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain Acetyltransf_CG PF14542.1 gi|55377028|ref|YP_134878.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Bac_luciferase PF00296.15 gi|55377029|ref|YP_134879.1| - 4.3e-66 223.1 12.1 5.2e-66 222.8 8.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase AMP-binding PF00501.23 gi|55377030|ref|YP_134880.1| - 5.7e-95 318.1 0.2 7.1e-95 317.8 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55377030|ref|YP_134880.1| - 1e-15 58.3 0.0 2.3e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF456 PF04306.8 gi|55377032|ref|YP_134882.1| - 3.6e-26 91.8 25.2 3.6e-26 91.8 17.5 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF456) DUF2955 PF11168.3 gi|55377032|ref|YP_134882.1| - 0.031 13.9 21.7 0.031 13.9 8.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2955) GNAT_acetyltr_2 PF13718.1 gi|55377034|ref|YP_134883.1| - 4.8e-50 169.6 0.1 2.6e-49 167.2 0.1 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|55377034|ref|YP_134883.1| - 3.2e-47 160.4 0.0 7e-47 159.3 0.0 1.6 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|55377034|ref|YP_134883.1| - 1.1e-23 82.6 0.0 3.8e-23 80.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|55377034|ref|YP_134883.1| - 2.7e-08 33.8 0.0 6.7e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|55377034|ref|YP_134883.1| - 6.3e-06 25.9 1.4 1.2e-05 24.9 0.1 2.2 3 0 0 3 3 3 1 AAA domain Acetyltransf_7 PF13508.1 gi|55377034|ref|YP_134883.1| - 1.1e-05 25.4 0.0 2.4e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55377034|ref|YP_134883.1| - 0.0017 18.4 0.0 0.24 11.5 0.0 2.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain NMO PF03060.10 gi|55377033|ref|YP_134884.1| - 5e-66 223.1 5.9 1.4e-65 221.6 4.1 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|55377033|ref|YP_134884.1| - 4.8e-05 22.4 3.1 0.00068 18.6 2.2 2.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|55377033|ref|YP_134884.1| - 0.12 11.2 10.9 0.02 13.7 5.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Ribosomal_L7Ae PF01248.21 gi|55377035|ref|YP_134885.1| - 2.6e-25 87.7 0.0 3.1e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|55377035|ref|YP_134885.1| - 0.00062 19.5 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|55377035|ref|YP_134885.1| - 0.045 14.0 0.2 0.058 13.6 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.7 gi|55377035|ref|YP_134885.1| - 0.078 13.0 1.5 5.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|297616206|ref|YP_003710344.1| - 5.7e-29 99.6 1.9 6.5e-29 99.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|55377036|ref|YP_134886.1| - 1.1e-28 98.9 0.0 1.6e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|55377036|ref|YP_134886.1| - 2.1e-05 24.0 1.0 2.8e-05 23.6 0.7 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|55377036|ref|YP_134886.1| - 0.024 14.4 0.5 0.037 13.8 0.4 1.3 1 0 0 1 1 1 0 YHS domain Arc_trans_TRASH PF08394.5 gi|55377036|ref|YP_134886.1| - 0.21 11.7 2.3 0.39 10.9 1.6 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain DUF329 PF03884.9 gi|55377036|ref|YP_134886.1| - 1.3 8.6 5.9 6.6 6.3 4.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF329) DUF1510 PF07423.6 gi|55377036|ref|YP_134886.1| - 3.1 7.1 15.0 3.2 7.0 10.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) NOA36 PF06524.7 gi|55377036|ref|YP_134886.1| - 4.2 6.5 11.9 4.8 6.3 8.3 1.2 1 0 0 1 1 1 0 NOA36 protein PPP4R2 PF09184.6 gi|55377036|ref|YP_134886.1| - 7 6.0 15.8 7.5 5.9 11.0 1.1 1 0 0 1 1 1 0 PPP4R2 NDK PF00334.14 gi|55377037|ref|YP_134887.1| - 1.5e-56 189.8 0.0 1.8e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Glutaredoxin PF00462.19 gi|55377038|ref|YP_134888.1| - 2.9e-15 55.9 0.0 3.6e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|55377038|ref|YP_134888.1| - 5.1e-15 55.4 0.0 6.2e-15 55.1 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|55377038|ref|YP_134888.1| - 1.7e-11 43.9 0.0 2e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|55377038|ref|YP_134888.1| - 0.00051 20.2 0.1 0.00054 20.1 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|55377038|ref|YP_134888.1| - 0.0042 17.2 0.0 0.005 16.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain SelR PF01641.13 gi|55377040|ref|YP_134890.1| - 9.3e-48 161.0 0.1 1.1e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|55377040|ref|YP_134890.1| - 0.0012 18.8 0.1 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_2 PF13240.1 gi|55377040|ref|YP_134890.1| - 0.015 14.7 0.9 0.6 9.6 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|55377040|ref|YP_134890.1| - 0.018 14.8 0.1 0.075 12.8 0.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|55377040|ref|YP_134890.1| - 0.088 12.1 11.5 0.65 9.3 0.1 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding HNH_5 PF14279.1 gi|55377040|ref|YP_134890.1| - 0.11 12.5 0.4 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 HNH endonuclease RRN7 PF11781.3 gi|55377040|ref|YP_134890.1| - 0.13 11.8 5.7 0.94 9.0 0.1 2.7 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|55377040|ref|YP_134890.1| - 0.4 11.0 2.1 4.2 7.7 1.5 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|55377040|ref|YP_134890.1| - 0.86 9.4 3.2 9.7 6.0 0.0 2.7 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|55377040|ref|YP_134890.1| - 1.7 7.9 4.9 12 5.2 0.1 2.5 2 1 1 3 3 2 0 zinc-ribbon domain GMC_oxred_C PF05199.8 gi|55377041|ref|YP_134891.1| - 7.3e-22 78.2 0.7 2.9e-21 76.2 0.5 2.0 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|55377041|ref|YP_134891.1| - 2.9e-15 56.0 0.0 5.1e-10 38.7 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GMC_oxred_N PF00732.14 gi|55377041|ref|YP_134891.1| - 5e-14 52.1 0.0 7.2e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_3 PF01494.14 gi|55377041|ref|YP_134891.1| - 3.3e-09 36.2 1.1 4.3e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|55377041|ref|YP_134891.1| - 8.5e-09 34.7 0.0 2.4e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|55377041|ref|YP_134891.1| - 8.6e-08 32.0 0.1 2.7e-07 30.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|55377041|ref|YP_134891.1| - 1.2e-06 28.5 0.0 0.00023 21.1 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55377041|ref|YP_134891.1| - 1.3e-06 27.1 0.1 1.9e-05 23.3 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|55377041|ref|YP_134891.1| - 1.2e-05 24.5 0.0 2.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_10 PF13460.1 gi|55377041|ref|YP_134891.1| - 3.7e-05 23.8 0.1 0.057 13.4 0.0 2.4 2 0 0 2 2 2 2 NADH(P)-binding FAD_oxidored PF12831.2 gi|55377041|ref|YP_134891.1| - 6.2e-05 22.2 0.3 0.0004 19.5 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|55377041|ref|YP_134891.1| - 0.0012 17.8 0.0 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|55377041|ref|YP_134891.1| - 0.0055 17.0 0.0 0.015 15.7 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377041|ref|YP_134891.1| - 0.0056 15.5 0.0 0.01 14.6 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|55377041|ref|YP_134891.1| - 0.0088 16.1 0.2 0.068 13.2 0.0 2.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|55377041|ref|YP_134891.1| - 0.0097 15.3 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|55377041|ref|YP_134891.1| - 0.018 14.7 0.0 0.053 13.2 0.0 1.8 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|55377041|ref|YP_134891.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|55377041|ref|YP_134891.1| - 0.027 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|55377041|ref|YP_134891.1| - 0.07 12.8 0.1 0.39 10.4 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|55377041|ref|YP_134891.1| - 0.14 10.7 0.3 0.51 8.9 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|55377041|ref|YP_134891.1| - 0.17 11.6 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 ThiF family Gluconate_2-dh3 PF13618.1 gi|55377042|ref|YP_134892.1| - 4.5e-09 36.5 0.0 7.9e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|55377042|ref|YP_134892.1| - 3.6e-05 23.4 2.3 0.0058 16.5 0.7 2.7 2 0 0 2 2 2 2 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_1 PF00583.19 gi|55377044|ref|YP_134894.1| - 2.8e-18 65.7 0.1 4.4e-18 65.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55377044|ref|YP_134894.1| - 3.5e-14 52.9 0.2 4.1e-14 52.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55377044|ref|YP_134894.1| - 8.6e-12 45.0 0.0 1.3e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55377044|ref|YP_134894.1| - 1.1e-06 28.7 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55377044|ref|YP_134894.1| - 1.5e-06 28.0 0.0 2.1e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377044|ref|YP_134894.1| - 6.1e-06 25.9 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|55377044|ref|YP_134894.1| - 7.1e-05 22.7 0.1 9e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|55377044|ref|YP_134894.1| - 0.00016 21.2 0.3 0.0014 18.2 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55377044|ref|YP_134894.1| - 0.00018 21.3 0.0 0.00033 20.4 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|55377044|ref|YP_134894.1| - 0.0071 16.0 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|55377044|ref|YP_134894.1| - 0.12 12.2 1.0 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.23 gi|55377045|ref|YP_134895.1| - 4.1e-16 58.5 1.0 2.5e-07 30.3 0.0 2.2 2 0 0 2 2 2 2 CBS domain GGDN PF05165.7 gi|55377046|ref|YP_134896.1| - 1.1e-88 296.5 0.9 1.4e-88 296.1 0.6 1.0 1 0 0 1 1 1 1 GGDN family HTH_20 PF12840.2 gi|55377047|ref|YP_134897.1| - 0.01 15.5 0.3 0.014 15.1 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|55377047|ref|YP_134897.1| - 0.067 12.8 0.2 0.11 12.1 0.2 1.4 1 0 0 1 1 1 0 MarR family CARDB PF07705.6 gi|55377049|ref|YP_134899.1| - 9.6e-10 38.4 12.1 8.7e-07 28.9 0.8 2.8 3 0 0 3 3 3 2 CARDB TRAP_beta PF05753.9 gi|55377049|ref|YP_134899.1| - 4.3e-06 26.0 2.1 0.00042 19.5 1.0 2.3 2 0 0 2 2 2 2 Translocon-associated protein beta (TRAPB) CelD_N PF02927.9 gi|55377049|ref|YP_134899.1| - 0.025 14.8 3.5 0.27 11.5 0.2 3.1 3 0 0 3 3 3 0 N-terminal ig-like domain of cellulase Transglut_C PF00927.17 gi|55377049|ref|YP_134899.1| - 0.067 13.2 2.4 0.77 9.8 0.3 2.6 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain PKD PF00801.15 gi|55377049|ref|YP_134899.1| - 0.21 11.3 10.4 0.099 12.3 0.4 4.0 3 2 1 4 4 4 0 PKD domain DUF2064 PF09837.4 gi|55377050|ref|YP_134900.1| - 0.00014 21.4 0.0 0.00022 20.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Zn-ribbon_8 PF09723.5 gi|55377051|ref|YP_134901.1| - 0.0098 15.8 1.4 0.029 14.3 1.0 1.8 1 0 0 1 1 1 1 Zinc ribbon domain Phage_lambd_GpG PF06894.6 gi|55377051|ref|YP_134901.1| - 0.022 14.3 0.2 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage lambda minor tail protein (GpG) Desulfoferrod_N PF06397.7 gi|55377051|ref|YP_134901.1| - 0.046 13.1 0.2 0.07 12.5 0.2 1.2 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DZR PF12773.2 gi|55377051|ref|YP_134901.1| - 0.1 12.4 1.1 0.18 11.6 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|55377051|ref|YP_134901.1| - 0.12 11.9 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 HemY_N PF07219.8 gi|55377051|ref|YP_134901.1| - 0.42 10.1 2.1 0.33 10.5 0.2 1.8 2 0 0 2 2 2 0 HemY protein N-terminus DUF4398 PF14346.1 gi|55377051|ref|YP_134901.1| - 1.1 9.3 13.6 0.19 11.8 2.6 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) UDG PF03167.14 gi|55377052|ref|YP_134902.1| - 5.2e-18 64.9 0.0 6.4e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|55377052|ref|YP_134902.1| - 0.012 15.0 0.4 0.024 14.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF539) Chorismate_synt PF01264.16 gi|55377053|ref|YP_134903.1| - 2.5e-122 407.7 0.0 2.8e-122 407.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|55377055|ref|YP_134905.1| - 4.9e-102 341.4 0.1 6e-102 341.1 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|55377055|ref|YP_134905.1| - 0.064 13.5 0.1 0.97 9.8 0.0 2.6 3 0 0 3 3 3 0 Copper amine oxidase N-terminal domain Leucyl-specific PF14795.1 gi|55377055|ref|YP_134905.1| - 0.1 12.4 0.4 0.42 10.5 0.1 2.2 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain adh_short PF00106.20 gi|55377056|ref|YP_134906.1| - 2.7e-27 95.7 5.8 3.3e-27 95.4 4.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55377056|ref|YP_134906.1| - 3.6e-18 66.2 0.0 4.8e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55377056|ref|YP_134906.1| - 1.6e-13 50.7 2.6 1.9e-13 50.4 1.8 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55377056|ref|YP_134906.1| - 2.5e-05 23.8 1.9 0.00062 19.2 1.3 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|55377056|ref|YP_134906.1| - 0.0099 15.5 0.8 0.015 14.9 0.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|55377056|ref|YP_134906.1| - 0.019 14.7 0.5 0.051 13.3 0.3 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Fox-1_C PF12414.3 gi|55377056|ref|YP_134906.1| - 0.04 14.3 0.5 0.04 14.3 0.3 1.9 2 0 0 2 2 2 0 Calcitonin gene-related peptide regulator C terminal Zip PF02535.17 gi|55377057|ref|YP_134907.1| - 7.8e-07 28.4 9.3 7.8e-07 28.4 6.5 2.8 1 1 1 2 2 2 2 ZIP Zinc transporter PAS_9 PF13426.1 gi|55377058|ref|YP_134908.1| - 6.1e-24 84.3 0.1 1.8e-23 82.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|55377058|ref|YP_134908.1| - 2.8e-17 62.5 0.1 6.7e-17 61.2 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|55377058|ref|YP_134908.1| - 1.1e-15 57.3 0.0 2.4e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55377058|ref|YP_134908.1| - 4.3e-13 49.2 0.1 3.1e-12 46.4 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|55377058|ref|YP_134908.1| - 1.9e-08 34.1 0.8 4.6e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55377058|ref|YP_134908.1| - 6.4e-08 32.1 0.0 2.6e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|55377058|ref|YP_134908.1| - 3.2e-07 30.3 0.0 8.4e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|55377058|ref|YP_134908.1| - 0.00016 21.3 0.0 0.00032 20.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|55377058|ref|YP_134908.1| - 0.051 13.8 0.0 0.17 12.1 0.0 1.9 2 1 0 2 2 2 0 PAS domain DUF3186 PF11382.3 gi|55377058|ref|YP_134908.1| - 0.24 10.4 5.4 0.22 10.6 0.9 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3186) Snf7 PF03357.16 gi|55377058|ref|YP_134908.1| - 0.51 9.7 2.9 0.97 8.7 0.4 2.2 2 0 0 2 2 2 0 Snf7 KaiC PF06745.8 gi|55377059|ref|YP_134909.1| - 5.4e-66 221.9 0.0 2.3e-37 128.2 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|55377059|ref|YP_134909.1| - 1e-27 96.8 0.0 1.3e-13 50.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55377059|ref|YP_134909.1| - 4.7e-13 49.5 0.3 7.2e-06 26.1 0.1 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|55377059|ref|YP_134909.1| - 2.2e-11 44.0 0.0 5.2e-05 23.3 0.1 3.0 2 1 0 2 2 2 2 AAA domain RecA PF00154.16 gi|55377059|ref|YP_134909.1| - 1.4e-10 40.8 0.4 5.3e-05 22.4 0.0 2.5 2 1 0 2 2 2 2 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|55377059|ref|YP_134909.1| - 6.8e-08 32.1 0.0 0.00051 19.4 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA PF00004.24 gi|55377059|ref|YP_134909.1| - 2.5e-07 30.9 0.5 0.017 15.3 0.1 2.8 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) GvpD PF07088.6 gi|55377059|ref|YP_134909.1| - 5.4e-07 28.3 0.1 3.7e-06 25.5 0.1 2.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|55377059|ref|YP_134909.1| - 6.3e-07 29.0 2.9 0.0052 16.5 0.0 3.0 3 0 0 3 3 3 2 Part of AAA domain AAA_17 PF13207.1 gi|55377059|ref|YP_134909.1| - 8.2e-07 29.8 2.4 0.0094 16.7 0.1 3.0 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|55377059|ref|YP_134909.1| - 2.3e-06 27.9 1.0 0.046 14.0 0.0 2.9 2 2 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|55377059|ref|YP_134909.1| - 2.6e-06 27.2 0.0 0.0005 19.7 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|55377059|ref|YP_134909.1| - 1.4e-05 24.8 0.4 0.0069 15.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|55377059|ref|YP_134909.1| - 2.1e-05 23.5 0.1 0.26 10.1 0.0 2.9 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_5 PF07728.9 gi|55377059|ref|YP_134909.1| - 2.4e-05 24.0 0.0 0.25 11.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|55377059|ref|YP_134909.1| - 2.6e-05 24.1 0.0 0.25 11.2 0.0 2.8 2 2 0 2 2 2 2 AAA domain CbiA PF01656.18 gi|55377059|ref|YP_134909.1| - 4e-05 23.0 0.1 0.00034 20.0 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Rad51 PF08423.6 gi|55377059|ref|YP_134909.1| - 6.5e-05 21.9 0.7 0.18 10.6 0.0 2.8 3 0 0 3 3 3 2 Rad51 Arch_ATPase PF01637.13 gi|55377059|ref|YP_134909.1| - 7.5e-05 22.5 0.0 0.034 13.8 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_10 PF12846.2 gi|55377059|ref|YP_134909.1| - 7.9e-05 22.2 0.0 0.36 10.2 0.0 2.6 2 1 0 2 2 2 2 AAA-like domain AAA_33 PF13671.1 gi|55377059|ref|YP_134909.1| - 0.00018 21.3 1.0 0.64 9.8 0.5 2.9 2 1 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|55377059|ref|YP_134909.1| - 0.00054 20.2 2.2 0.12 12.7 0.3 2.9 2 2 0 2 2 2 1 ABC transporter RNA_helicase PF00910.17 gi|55377059|ref|YP_134909.1| - 0.00096 19.2 0.0 0.43 10.7 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_29 PF13555.1 gi|55377059|ref|YP_134909.1| - 0.0012 18.3 2.8 0.019 14.4 0.6 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF2075 PF09848.4 gi|55377059|ref|YP_134909.1| - 0.0016 17.4 0.0 0.088 11.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|55377059|ref|YP_134909.1| - 0.0064 16.1 1.5 0.86 9.1 0.0 2.6 3 0 0 3 3 2 1 AAA domain DUF258 PF03193.11 gi|55377059|ref|YP_134909.1| - 0.0067 15.6 0.2 0.038 13.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_11 PF13086.1 gi|55377059|ref|YP_134909.1| - 0.0091 15.5 0.0 1.3 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain PAXNEB PF05625.6 gi|55377059|ref|YP_134909.1| - 0.011 14.5 2.3 1.4 7.6 0.3 2.3 2 0 0 2 2 2 0 PAXNEB protein T2SE PF00437.15 gi|55377059|ref|YP_134909.1| - 0.012 14.5 0.7 4.3 6.1 0.0 2.9 3 0 0 3 3 3 0 Type II/IV secretion system protein MobB PF03205.9 gi|55377059|ref|YP_134909.1| - 0.019 14.6 0.0 3.4 7.3 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|55377059|ref|YP_134909.1| - 0.026 14.4 2.9 3.6 7.5 0.0 3.1 2 1 1 3 3 3 0 AAA domain Zeta_toxin PF06414.7 gi|55377059|ref|YP_134909.1| - 0.043 12.8 0.8 3.3 6.7 0.2 2.4 2 0 0 2 2 2 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|55377059|ref|YP_134909.1| - 0.076 11.6 0.0 5.5 5.4 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Mg_chelatase PF01078.16 gi|55377059|ref|YP_134909.1| - 0.086 11.9 0.3 1.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Guanylate_kin PF00625.16 gi|55377059|ref|YP_134909.1| - 0.096 12.1 0.1 2.4 7.5 0.0 2.3 2 0 0 2 2 2 0 Guanylate kinase NTPase_1 PF03266.10 gi|55377059|ref|YP_134909.1| - 0.13 11.9 0.6 3.5 7.2 0.0 3.0 3 0 0 3 3 3 0 NTPase PhoH PF02562.11 gi|55377059|ref|YP_134909.1| - 0.15 11.3 1.8 1.2 8.3 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein PHTB1_C PF14728.1 gi|55377059|ref|YP_134909.1| - 0.15 10.8 0.1 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 PTHB1 C-terminus DAP3 PF10236.4 gi|55377059|ref|YP_134909.1| - 0.17 10.8 0.0 9.6 5.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Saccharop_dh_N PF04455.7 gi|55377060|ref|YP_134910.1| - 2.9e-39 133.3 0.0 6.1e-39 132.2 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|55377060|ref|YP_134910.1| - 8.6e-05 22.3 0.1 0.0024 17.6 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.12 gi|55377060|ref|YP_134910.1| - 0.022 13.8 0.0 0.052 12.6 0.0 1.6 1 1 0 1 1 1 0 Deoxyhypusine synthase TPP_enzyme_N PF02776.13 gi|55377062|ref|YP_134912.1| - 4.1e-42 143.5 1.8 2.4e-38 131.3 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|55377062|ref|YP_134912.1| - 1.4e-37 128.5 0.2 2.4e-37 127.8 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|55377062|ref|YP_134912.1| - 4.8e-34 117.0 0.3 2.4e-33 114.7 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF159 PF02586.9 gi|55377063|ref|YP_134913.1| - 1.7e-62 210.6 0.0 1.9e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 PALP PF00291.20 gi|55377065|ref|YP_134915.1| - 1.7e-52 178.6 1.7 1.9e-52 178.3 1.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|55377065|ref|YP_134915.1| - 0.068 12.7 0.3 0.39 10.2 0.2 2.1 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Pribosyltran PF00156.22 gi|55377065|ref|YP_134915.1| - 0.077 12.7 0.2 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribosyl transferase domain eIF-5_eIF-2B PF01873.12 gi|55377066|ref|YP_134916.1| - 2.8e-26 91.6 0.0 4.1e-26 91.0 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|55377066|ref|YP_134916.1| - 5.8e-08 32.4 1.4 8.7e-08 31.8 0.9 1.3 1 0 0 1 1 1 1 TRAM domain zf-ribbon_3 PF13248.1 gi|55377066|ref|YP_134916.1| - 0.061 12.5 0.5 8.8 5.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|55377066|ref|YP_134916.1| - 0.085 12.3 2.0 0.37 10.3 1.4 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.5 gi|55377066|ref|YP_134916.1| - 0.14 12.1 0.2 0.27 11.1 0.2 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HTH_20 PF12840.2 gi|55377067|ref|YP_134917.1| - 0.00068 19.3 0.1 0.003 17.3 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain DUF3071 PF11268.3 gi|55377067|ref|YP_134917.1| - 0.023 14.4 0.1 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) DICT PF10069.4 gi|55377068|ref|YP_134918.1| - 4.5e-23 81.2 0.0 6.7e-23 80.6 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems FAD_binding_2 PF00890.19 gi|55377069|ref|YP_134919.1| - 8.7e-92 308.1 3.2 1.1e-91 307.7 2.2 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|55377069|ref|YP_134919.1| - 1e-21 77.1 0.0 2e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|55377069|ref|YP_134919.1| - 1e-08 34.4 0.8 7.7e-08 31.6 0.1 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|55377069|ref|YP_134919.1| - 3.3e-05 23.0 0.5 0.00011 21.3 0.3 1.8 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|55377069|ref|YP_134919.1| - 0.0028 16.1 3.4 1.1 7.6 1.1 2.9 3 0 0 3 3 3 2 HI0933-like protein Shikimate_DH PF01488.15 gi|55377069|ref|YP_134919.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.9 gi|55377069|ref|YP_134919.1| - 0.019 14.8 8.2 0.98 9.2 5.7 2.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377069|ref|YP_134919.1| - 0.02 14.9 0.9 0.051 13.6 0.7 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|55377069|ref|YP_134919.1| - 0.032 13.6 0.3 0.054 12.9 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|55377069|ref|YP_134919.1| - 0.13 12.0 0.7 0.31 10.8 0.5 1.6 1 0 0 1 1 1 0 ThiF family Thi4 PF01946.12 gi|55377069|ref|YP_134919.1| - 0.13 11.3 2.8 2.6 7.0 0.2 2.4 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|55377069|ref|YP_134919.1| - 0.14 11.0 0.6 0.21 10.4 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|55377069|ref|YP_134919.1| - 0.48 10.4 3.8 0.37 10.8 0.8 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Na_H_antiporter PF03553.9 gi|55377070|ref|YP_134920.1| - 6.8e-54 182.9 45.0 3.1e-52 177.5 14.5 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family TOBE_2 PF08402.5 gi|55377071|ref|YP_134921.1| - 1.7e-12 47.1 0.3 1.7e-12 47.1 0.2 3.4 4 1 1 5 5 5 1 TOBE domain ABC_tran PF00005.22 gi|55377071|ref|YP_134921.1| - 1.6e-11 44.6 0.0 6.3e-11 42.7 0.0 1.9 2 1 0 2 2 2 1 ABC transporter TOBE PF03459.12 gi|55377071|ref|YP_134921.1| - 6.5e-07 29.3 1.6 0.00015 21.8 0.1 3.5 2 1 1 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|55377071|ref|YP_134921.1| - 6.8e-05 22.9 0.0 0.0001 22.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|55377071|ref|YP_134921.1| - 0.0056 15.3 0.0 0.043 12.3 0.0 2.0 1 1 0 1 1 1 1 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|55377071|ref|YP_134921.1| - 0.018 14.9 0.1 0.84 9.6 0.1 2.9 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|55377071|ref|YP_134921.1| - 0.035 13.3 0.1 0.1 11.8 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BPD_transp_1 PF00528.17 gi|55377072|ref|YP_134922.1| - 9.1e-31 106.8 44.1 6e-18 65.0 8.9 3.3 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.15 gi|55377072|ref|YP_134922.1| - 0.39 9.7 5.8 5.5 5.9 3.4 2.7 2 1 0 2 2 2 0 E1-E2 ATPase SBP_bac_8 PF13416.1 gi|55377073|ref|YP_134923.1| - 2.6e-21 76.6 0.1 3.4e-21 76.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|55377073|ref|YP_134923.1| - 1.1e-17 64.2 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55377073|ref|YP_134923.1| - 1.2e-13 51.5 0.4 1.5e-13 51.1 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|55377073|ref|YP_134923.1| - 0.00054 19.6 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55377073|ref|YP_134923.1| - 0.2 11.7 2.8 0.59 10.2 1.9 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2929 PF11151.3 gi|55377074|ref|YP_134924.1| - 7.4 6.7 7.8 0.54 10.3 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) E1_dh PF00676.15 gi|55377075|ref|YP_134925.1| - 2.2e-75 253.1 0.0 2.8e-75 252.8 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|55377075|ref|YP_134925.1| - 2.3e-05 23.4 0.0 3.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|55377075|ref|YP_134925.1| - 0.0004 19.2 0.0 0.00064 18.6 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|55377075|ref|YP_134925.1| - 0.034 13.7 0.1 0.08 12.5 0.1 1.6 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|55377075|ref|YP_134925.1| - 0.087 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Nramp PF01566.13 gi|55377077|ref|YP_134927.1| - 5.9e-63 212.8 35.3 1.1e-62 211.9 24.5 1.4 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF3961 PF13106.1 gi|55377077|ref|YP_134927.1| - 0.58 9.7 4.2 0.25 10.9 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3961) VPEP PF07589.6 gi|55377079|ref|YP_134929.1| - 0.0024 17.6 1.3 0.0024 17.6 0.9 2.1 2 0 0 2 2 2 1 PEP-CTERM motif PGPGW PF09656.5 gi|55377079|ref|YP_134929.1| - 0.048 12.9 4.4 0.054 12.7 3.1 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|55377079|ref|YP_134929.1| - 1.2 9.2 6.4 2.4 8.2 4.4 1.6 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Beta-Casp PF10996.3 gi|55377080|ref|YP_134930.1| - 5.4e-30 103.9 0.0 1.1e-29 102.8 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|55377080|ref|YP_134930.1| - 1.4e-21 77.0 4.0 2.7e-21 76.1 2.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|55377080|ref|YP_134930.1| - 9.2e-15 54.1 0.0 2.4e-14 52.8 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|55377080|ref|YP_134930.1| - 1.5e-11 44.1 0.3 3.3e-11 43.0 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|55377080|ref|YP_134930.1| - 1.6e-07 30.8 0.1 7.2e-07 28.6 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|55377080|ref|YP_134930.1| - 6.4e-05 22.5 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|55377080|ref|YP_134930.1| - 0.00028 20.6 0.0 0.00055 19.6 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|55377080|ref|YP_134930.1| - 0.028 14.0 0.0 0.081 12.5 0.0 1.8 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|55377080|ref|YP_134930.1| - 0.033 13.8 0.2 0.09 12.4 0.2 1.8 1 0 0 1 1 1 0 KH domain Corona_NS4 PF03905.8 gi|55377081|ref|YP_134931.1| - 0.09 12.5 0.3 0.84 9.4 0.0 2.2 2 0 0 2 2 2 0 Coronavirus non-structural protein NS4 Iron_transport PF10634.4 gi|55377082|ref|YP_134932.1| - 0.0015 18.4 0.0 0.0096 15.8 0.0 2.1 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.4 gi|55377082|ref|YP_134932.1| - 0.0038 17.1 2.1 0.012 15.5 1.5 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Dyp_perox PF04261.7 gi|55377083|ref|YP_134933.1| - 1.2e-05 24.2 0.4 6.7e-05 21.7 0.3 1.9 1 1 0 1 1 1 1 Dyp-type peroxidase family TAT_signal PF10518.4 gi|55377084|ref|YP_134934.1| - 0.013 15.4 0.3 0.013 15.4 0.2 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.2 gi|55377085|ref|YP_134935.1| - 3.8e-14 52.2 4.2 4.9e-07 29.4 0.6 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|55377085|ref|YP_134935.1| - 1.8e-11 43.4 0.1 5.7e-07 29.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|55377085|ref|YP_134935.1| - 4e-09 35.7 0.1 2.8e-05 23.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|55377085|ref|YP_134935.1| - 1.3e-07 31.2 0.1 1.4e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55377085|ref|YP_134935.1| - 1.9e-05 24.2 6.5 0.0015 18.1 0.6 2.9 4 0 0 4 4 4 2 MarR family HTH_IclR PF09339.5 gi|55377085|ref|YP_134935.1| - 2.5e-05 23.7 0.4 0.0034 16.9 0.1 2.7 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|55377085|ref|YP_134935.1| - 0.0008 18.9 0.0 0.097 12.2 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.17 gi|55377085|ref|YP_134935.1| - 0.0037 16.9 0.2 0.15 11.7 0.0 2.7 3 0 0 3 3 3 1 MarR family HTH_34 PF13601.1 gi|55377085|ref|YP_134935.1| - 0.0043 17.0 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain FaeA PF04703.7 gi|55377085|ref|YP_134935.1| - 0.0059 16.7 0.1 0.61 10.2 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein HTH_27 PF13463.1 gi|55377085|ref|YP_134935.1| - 0.013 15.8 0.6 0.071 13.4 0.2 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|55377085|ref|YP_134935.1| - 0.032 14.0 0.0 0.074 12.8 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|55377085|ref|YP_134935.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SAM_adeno_trans PF01887.11 gi|55377087|ref|YP_134937.1| - 3.6e-12 45.8 0.0 2e-11 43.4 0.0 2.0 1 1 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HGTP_anticodon PF03129.15 gi|55377088|ref|YP_134938.1| - 8.9e-21 73.6 0.1 1.8e-20 72.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|55377088|ref|YP_134938.1| - 2.1e-19 69.2 0.6 4.7e-19 68.0 0.4 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|55377088|ref|YP_134938.1| - 5.2e-15 55.4 0.0 8.2e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) EthD PF07110.6 gi|55377088|ref|YP_134938.1| - 0.01 16.7 1.0 4.2 8.3 0.3 2.4 2 0 0 2 2 2 0 EthD domain GBS_Bsp-like PF08481.5 gi|55377088|ref|YP_134938.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 GBS Bsp-like repeat Patatin PF01734.17 gi|55377089|ref|YP_134939.1| - 2.4e-15 57.0 1.2 4.3e-15 56.1 0.8 1.4 1 1 0 1 1 1 1 Patatin-like phospholipase CBS PF00571.23 gi|55377090|ref|YP_134940.1| - 3.6e-29 100.2 5.3 8.1e-15 54.3 0.6 2.1 2 0 0 2 2 2 2 CBS domain DUF1269 PF06897.7 gi|55377090|ref|YP_134940.1| - 0.039 13.9 0.4 0.17 11.9 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1269) DUF3625 PF12293.3 gi|55377090|ref|YP_134940.1| - 0.089 11.8 0.2 0.15 11.1 0.1 1.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3625) DUF1177 PF06675.6 gi|55377090|ref|YP_134940.1| - 0.098 11.2 3.1 0.15 10.6 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1177) PGM_PMM_I PF02878.11 gi|55377090|ref|YP_134940.1| - 0.1 12.1 0.9 0.14 11.6 0.5 1.3 1 1 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Glu_synthase PF01645.12 gi|55377091|ref|YP_134941.1| - 1.9e-150 500.8 0.2 6.9e-149 495.7 0.1 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|55377091|ref|YP_134941.1| - 2.1e-125 418.2 0.0 4.8e-125 417.0 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|55377091|ref|YP_134941.1| - 1.2e-109 366.0 0.0 2.1e-109 365.2 0.0 1.4 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|55377091|ref|YP_134941.1| - 8.1e-60 201.2 9.7 1.3e-59 200.5 6.8 1.3 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|55377091|ref|YP_134941.1| - 0.0084 14.9 5.1 0.0075 15.1 1.2 2.4 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Band_7 PF01145.20 gi|55377092|ref|YP_134942.1| - 7e-28 97.7 10.0 7e-28 97.7 7.0 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Epimerase PF01370.16 gi|55377093|ref|YP_134943.1| - 9.4e-30 103.7 1.0 2.2e-28 99.2 0.7 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55377093|ref|YP_134943.1| - 5.3e-08 32.0 0.1 0.005 15.7 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55377093|ref|YP_134943.1| - 5.9e-08 32.9 0.3 9.1e-08 32.3 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|55377093|ref|YP_134943.1| - 1.8e-06 26.8 0.0 0.00036 19.3 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|55377093|ref|YP_134943.1| - 0.03 14.2 0.1 0.11 12.4 0.0 1.9 1 1 1 2 2 2 0 short chain dehydrogenase Pyr_redox PF00070.22 gi|55377093|ref|YP_134943.1| - 0.089 13.2 0.0 0.23 11.8 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Regulator_TrmB PF11495.3 gi|55377094|ref|YP_134944.1| - 1.3e-61 207.5 0.0 1.7e-61 207.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|55377094|ref|YP_134944.1| - 4.7e-18 64.6 0.0 9.2e-18 63.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|55377094|ref|YP_134944.1| - 0.00095 18.7 0.0 0.036 13.6 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|55377094|ref|YP_134944.1| - 0.0047 17.0 0.0 0.066 13.3 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.2 gi|55377094|ref|YP_134944.1| - 0.017 14.7 0.0 0.051 13.2 0.0 1.9 1 1 0 1 1 1 0 MarR family YflT PF11181.3 gi|55377094|ref|YP_134944.1| - 0.092 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Heat induced stress protein YflT Glyco_hydro_3 PF00933.16 gi|55377095|ref|YP_134945.1| - 1.4e-66 224.5 0.0 1.8e-66 224.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|55377095|ref|YP_134945.1| - 6e-40 137.1 0.1 1.3e-39 136.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|55377095|ref|YP_134945.1| - 8.1e-12 44.9 0.1 1.6e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain TAT_signal PF10518.4 gi|55377095|ref|YP_134945.1| - 5.1e-05 22.9 6.8 0.0002 21.1 4.7 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|55377095|ref|YP_134945.1| - 0.16 11.1 3.6 0.56 9.4 2.5 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fe-ADH_2 PF13685.1 gi|55377096|ref|YP_134946.1| - 1.1e-61 208.3 2.0 1.4e-61 208.0 1.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|55377096|ref|YP_134946.1| - 9.2e-20 70.5 4.5 1.8e-19 69.6 3.1 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|55377096|ref|YP_134946.1| - 4.3e-11 42.2 0.2 1.2e-10 40.8 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase NUDIX PF00293.23 gi|55377097|ref|YP_134947.1| - 0.087 12.4 0.2 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 NUDIX domain Peptidase_S9 PF00326.16 gi|55377098|ref|YP_134948.1| - 1.9e-49 167.7 0.0 3.2e-49 167.0 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|55377098|ref|YP_134948.1| - 2.6e-13 49.9 0.0 5.3e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|55377098|ref|YP_134948.1| - 4.4e-12 45.9 0.0 1.4e-08 34.5 0.0 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|55377098|ref|YP_134948.1| - 1.1e-11 45.0 1.2 4.8e-11 42.9 0.8 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|55377098|ref|YP_134948.1| - 1.7e-10 40.5 0.0 3.1e-09 36.4 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.7 gi|55377098|ref|YP_134948.1| - 5.8e-08 32.2 3.2 5.7e-06 25.8 0.2 3.6 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.10 gi|55377098|ref|YP_134948.1| - 2.4e-06 26.3 0.0 3.3e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.7 gi|55377098|ref|YP_134948.1| - 8.7e-06 24.4 0.0 0.0015 17.0 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.15 gi|55377098|ref|YP_134948.1| - 4.3e-05 23.1 0.1 0.015 14.8 0.0 2.4 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|55377098|ref|YP_134948.1| - 4.7e-05 23.0 0.1 0.0011 18.6 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|55377098|ref|YP_134948.1| - 6.2e-05 22.7 0.1 0.042 13.6 0.0 2.7 2 0 0 2 2 2 1 Putative lysophospholipase BAAT_C PF08840.6 gi|55377098|ref|YP_134948.1| - 0.00041 20.1 0.0 0.018 14.7 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.16 gi|55377098|ref|YP_134948.1| - 0.00091 17.8 0.0 2.4 6.6 0.0 3.8 3 1 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_2 PF02230.11 gi|55377098|ref|YP_134948.1| - 0.00097 18.6 0.0 0.35 10.2 0.0 2.4 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|55377098|ref|YP_134948.1| - 0.011 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.15 gi|55377098|ref|YP_134948.1| - 0.031 13.6 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative esterase Peptidase_S28 PF05577.7 gi|55377098|ref|YP_134948.1| - 0.12 10.8 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF829 PF05705.9 gi|55377098|ref|YP_134948.1| - 0.19 11.3 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) Glyco_trans_4_4 PF13579.1 gi|55377099|ref|YP_134949.1| - 7.6e-18 65.1 9.2 1.5e-16 60.9 5.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|55377099|ref|YP_134949.1| - 3.1e-14 52.7 0.0 6e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|55377099|ref|YP_134949.1| - 8.8e-09 35.3 0.0 3.8e-08 33.2 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|55377099|ref|YP_134949.1| - 0.00039 20.2 0.0 0.0016 18.3 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like Na_H_antiporter PF03553.9 gi|55377100|ref|YP_134950.1| - 6.5e-40 137.0 31.5 6.1e-38 130.5 12.1 3.8 3 1 0 3 3 3 2 Na+/H+ antiporter family DcuC PF03606.10 gi|55377100|ref|YP_134950.1| - 1.3e-05 23.6 11.9 0.014 13.6 4.9 2.3 2 0 0 2 2 2 2 C4-dicarboxylate anaerobic carrier ResIII PF04851.10 gi|55377101|ref|YP_134951.1| - 1.4e-17 64.1 0.0 3.5e-17 62.8 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|55377101|ref|YP_134951.1| - 1.5e-14 53.4 0.0 2.2e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|55377101|ref|YP_134951.1| - 2.6e-12 46.4 0.0 5.2e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|55377101|ref|YP_134951.1| - 5.1e-10 39.1 0.0 9.4e-10 38.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|55377101|ref|YP_134951.1| - 9e-05 22.1 0.5 0.0002 21.0 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|55377101|ref|YP_134951.1| - 0.00042 20.4 0.3 0.0048 17.0 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55377101|ref|YP_134951.1| - 0.0011 19.2 0.0 0.0031 17.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|55377101|ref|YP_134951.1| - 0.0021 17.5 3.6 0.015 14.7 0.4 3.1 2 1 1 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|55377101|ref|YP_134951.1| - 0.0025 17.4 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|55377101|ref|YP_134951.1| - 0.009 15.7 0.1 0.095 12.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|55377101|ref|YP_134951.1| - 0.0095 15.8 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55377101|ref|YP_134951.1| - 0.031 13.7 0.7 2.2 7.6 0.4 2.4 2 0 0 2 2 2 0 AAA-like domain AAA_11 PF13086.1 gi|55377101|ref|YP_134951.1| - 0.16 11.5 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.7 gi|55377102|ref|YP_134952.1| - 8.3e-22 77.4 0.0 1.5e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377102|ref|YP_134952.1| - 2.6e-16 59.7 0.0 3.4e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55377102|ref|YP_134952.1| - 8.3e-14 51.4 0.0 1.1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377102|ref|YP_134952.1| - 1e-13 51.4 0.0 1.6e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55377102|ref|YP_134952.1| - 1.5e-11 44.6 0.0 2.5e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377102|ref|YP_134952.1| - 1.4e-10 41.7 0.0 2.2e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55377102|ref|YP_134952.1| - 3.9e-10 39.7 0.7 6.9e-10 38.9 0.5 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|55377102|ref|YP_134952.1| - 1.2e-09 37.6 0.0 1.7e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|55377102|ref|YP_134952.1| - 1.4e-06 27.5 0.0 6e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|55377102|ref|YP_134952.1| - 2.4e-06 27.0 0.0 3.4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|55377102|ref|YP_134952.1| - 0.00014 21.2 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.11 gi|55377102|ref|YP_134952.1| - 0.0032 15.8 0.0 0.004 15.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CheR PF01739.13 gi|55377102|ref|YP_134952.1| - 0.0032 16.7 0.0 0.36 10.0 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain TPMT PF05724.6 gi|55377102|ref|YP_134952.1| - 0.0053 16.2 0.0 0.047 13.1 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|55377102|ref|YP_134952.1| - 0.15 11.1 0.0 0.81 8.8 0.0 2.0 2 1 0 2 2 2 0 Tellurite resistance protein TehB MCPsignal PF00015.16 gi|55377103|ref|YP_134953.1| - 3.8e-54 183.4 57.9 4.4e-51 173.4 22.8 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|55377103|ref|YP_134953.1| - 4.6e-37 127.1 1.8 3e-36 124.4 0.3 2.6 2 0 0 2 2 2 1 Protoglobin DUF4200 PF13863.1 gi|55377103|ref|YP_134953.1| - 2.2e-06 27.6 15.5 0.00044 20.1 2.0 3.3 2 2 0 2 2 2 2 Domain of unknown function (DUF4200) DUF948 PF06103.6 gi|55377103|ref|YP_134953.1| - 4.7e-06 26.3 33.3 0.0076 16.0 1.4 5.5 3 2 1 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF4047 PF13256.1 gi|55377103|ref|YP_134953.1| - 0.00013 21.9 2.0 0.00013 21.9 1.4 3.0 3 0 0 3 3 2 1 Domain of unknown function (DUF4047) BLOC1_2 PF10046.4 gi|55377103|ref|YP_134953.1| - 0.00053 20.0 32.1 0.017 15.2 3.3 6.0 3 2 3 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|55377103|ref|YP_134953.1| - 0.0027 17.4 38.0 0.1 12.3 1.5 4.8 3 1 2 5 5 5 4 Laminin Domain II Reo_sigmaC PF04582.7 gi|55377103|ref|YP_134953.1| - 0.0055 15.9 30.3 0.016 14.3 5.9 3.5 1 1 1 3 3 3 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|55377103|ref|YP_134953.1| - 0.014 14.0 24.0 0.12 10.9 4.6 2.9 3 0 0 3 3 3 0 Spc7 kinetochore protein IncA PF04156.9 gi|55377103|ref|YP_134953.1| - 0.015 14.9 28.0 0.05 13.1 5.2 2.8 1 1 1 2 2 2 0 IncA protein Exonuc_VII_S PF02609.11 gi|55377103|ref|YP_134953.1| - 0.016 14.9 5.2 2.3 8.0 0.5 3.9 3 0 0 3 3 3 0 Exonuclease VII small subunit Tropomyosin PF00261.15 gi|55377103|ref|YP_134953.1| - 0.038 13.0 34.6 0.011 14.9 9.9 2.5 2 0 0 2 2 2 0 Tropomyosin Bac_globin PF01152.16 gi|55377103|ref|YP_134953.1| - 0.042 13.8 0.0 0.042 13.8 0.0 3.6 3 3 2 5 5 3 0 Bacterial-like globin NPV_P10 PF05531.7 gi|55377103|ref|YP_134953.1| - 0.089 13.0 37.7 0.61 10.3 1.4 6.4 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein TMP_2 PF06791.8 gi|55377103|ref|YP_134953.1| - 0.11 12.0 38.5 0.3 10.6 6.3 4.3 2 1 3 5 5 5 0 Prophage tail length tape measure protein Syntaxin-6_N PF09177.6 gi|55377103|ref|YP_134953.1| - 0.14 12.5 28.3 0.51 10.7 1.5 5.1 3 2 2 5 5 5 0 Syntaxin 6, N-terminal APG6 PF04111.7 gi|55377103|ref|YP_134953.1| - 0.27 10.2 22.4 0.64 9.0 3.5 2.8 2 1 0 2 2 2 0 Autophagy protein Apg6 LOH1CR12 PF10158.4 gi|55377103|ref|YP_134953.1| - 0.28 10.9 17.0 0.031 14.0 1.0 3.8 3 1 1 4 4 3 0 Tumour suppressor protein Seryl_tRNA_N PF02403.17 gi|55377103|ref|YP_134953.1| - 0.3 11.1 25.7 0.53 10.3 1.5 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.4 gi|55377103|ref|YP_134953.1| - 0.57 10.0 26.2 1.2 8.9 7.0 2.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mitofilin PF09731.4 gi|55377103|ref|YP_134953.1| - 0.57 8.7 31.8 63 2.0 22.3 2.6 2 1 0 2 2 2 0 Mitochondrial inner membrane protein Baculo_PEP_C PF04513.7 gi|55377103|ref|YP_134953.1| - 0.64 9.8 34.5 0.1 12.4 2.9 4.6 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Muted PF14942.1 gi|55377103|ref|YP_134953.1| - 0.78 9.6 24.1 1.5 8.7 3.8 4.0 3 2 1 4 4 4 0 Organelle biogenesis, Muted-like protein Dor1 PF04124.7 gi|55377103|ref|YP_134953.1| - 0.91 7.9 20.2 0.53 8.6 2.7 3.9 2 1 0 3 3 3 0 Dor1-like family ISG65-75 PF11727.3 gi|55377103|ref|YP_134953.1| - 1 8.3 33.1 0.33 9.9 7.6 3.4 1 1 2 3 3 3 0 Invariant surface glycoprotein Fib_alpha PF08702.5 gi|55377103|ref|YP_134953.1| - 1 9.4 25.1 3.4 7.7 3.7 4.8 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Vip3A_N PF12495.3 gi|55377103|ref|YP_134953.1| - 1.4 8.6 10.0 13 5.4 0.2 3.9 2 2 1 3 3 3 0 Vegetative insecticide protein 3A N terminal DUF904 PF06005.7 gi|55377103|ref|YP_134953.1| - 1.4 9.2 11.5 0.54 10.5 2.7 3.6 2 2 0 2 2 2 0 Protein of unknown function (DUF904) COG2 PF06148.6 gi|55377103|ref|YP_134953.1| - 1.4 8.7 26.6 2.9 7.7 1.6 5.4 3 2 2 5 5 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Allexi_40kDa PF05549.6 gi|55377103|ref|YP_134953.1| - 1.5 8.0 19.2 0.31 10.3 2.5 3.1 1 1 1 3 3 3 0 Allexivirus 40kDa protein Atg14 PF10186.4 gi|55377103|ref|YP_134953.1| - 2.2 7.1 12.1 1.7 7.4 1.4 2.4 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 COG5 PF10392.4 gi|55377103|ref|YP_134953.1| - 2.3 8.1 16.5 2.4 8.1 0.4 4.5 1 1 3 4 4 4 0 Golgi transport complex subunit 5 Flagellin_IN PF07196.8 gi|55377103|ref|YP_134953.1| - 2.5 8.1 9.5 2.1 8.3 0.5 3.5 3 0 0 3 3 2 0 Flagellin hook IN motif Spectrin PF00435.16 gi|55377103|ref|YP_134953.1| - 2.8 8.2 25.3 0.38 11.0 2.4 4.4 3 2 2 5 5 4 0 Spectrin repeat YjcZ PF13990.1 gi|55377103|ref|YP_134953.1| - 3.2 6.7 16.3 3.9 6.5 2.2 2.9 2 1 0 2 2 2 0 YjcZ-like protein TMPIT PF07851.8 gi|55377103|ref|YP_134953.1| - 3.3 6.7 15.9 1.3 8.0 2.5 2.8 2 1 1 3 3 3 0 TMPIT-like protein ERM PF00769.14 gi|55377103|ref|YP_134953.1| - 3.9 6.9 28.3 3.1 7.2 8.7 2.4 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Syntaxin PF00804.20 gi|55377103|ref|YP_134953.1| - 4.1 7.6 33.2 0.9 9.7 2.6 5.1 2 1 4 6 6 6 0 Syntaxin Hemerythrin PF01814.18 gi|55377103|ref|YP_134953.1| - 4.7 7.3 14.6 3 7.9 0.2 4.6 2 1 2 4 4 4 0 Hemerythrin HHE cation binding domain Vps53_N PF04100.7 gi|55377103|ref|YP_134953.1| - 4.7 5.8 28.8 1.5 7.5 5.1 3.8 2 1 1 3 3 3 0 Vps53-like, N-terminal Mnd1 PF03962.10 gi|55377103|ref|YP_134953.1| - 5 6.7 28.3 2.8 7.5 2.3 3.7 1 1 2 3 3 3 0 Mnd1 family FH2 PF02181.18 gi|55377103|ref|YP_134953.1| - 8.2 5.2 19.8 2 7.1 2.8 3.3 3 1 0 3 3 3 0 Formin Homology 2 Domain CAP_N PF01213.14 gi|55377103|ref|YP_134953.1| - 8.5 5.5 13.2 0.31 10.3 0.9 3.0 2 1 1 3 3 3 0 Adenylate cyclase associated (CAP) N terminal DUF1664 PF07889.7 gi|55377103|ref|YP_134953.1| - 8.8 6.1 31.6 8.5 6.1 1.8 4.8 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) RmuC PF02646.11 gi|55377103|ref|YP_134953.1| - 9.5 4.9 22.2 1.5 7.6 1.7 4.7 2 1 5 7 7 7 0 RmuC family Pterin_bind PF00809.17 gi|55377104|ref|YP_134954.1| - 2.1e-70 236.3 0.0 3.8e-70 235.5 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|55377104|ref|YP_134954.1| - 1.4e-13 51.3 0.0 2.5e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|55377104|ref|YP_134954.1| - 1e-10 41.4 0.0 3.8e-10 39.6 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.1 gi|55377104|ref|YP_134954.1| - 0.00099 18.3 7.5 0.34 10.1 0.0 3.8 4 0 0 4 4 4 2 Phosphoenolpyruvate phosphomutase BBS2_N PF14781.1 gi|55377104|ref|YP_134954.1| - 0.017 14.7 0.0 0.043 13.4 0.0 1.7 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, N-terminal Form_Nir_trans PF01226.12 gi|55377106|ref|YP_134956.1| - 6.6e-50 169.3 17.6 7.6e-50 169.1 12.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter CReP_N PF10472.4 gi|55377106|ref|YP_134956.1| - 0.074 11.7 0.5 0.1 11.2 0.3 1.1 1 0 0 1 1 1 0 eIF2-alpha phosphatase phosphorylation constitutive repressor AICARFT_IMPCHas PF01808.13 gi|55377108|ref|YP_134958.1| - 2.3e-87 293.0 0.1 3.1e-87 292.5 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|55377108|ref|YP_134958.1| - 2.6e-39 134.6 0.0 5.6e-39 133.5 0.0 1.6 2 0 0 2 2 2 1 Formyl transferase DRTGG PF07085.7 gi|55377108|ref|YP_134958.1| - 0.028 14.0 0.0 0.14 11.7 0.0 2.3 2 0 0 2 2 2 0 DRTGG domain Lipl32 PF12103.3 gi|55377108|ref|YP_134958.1| - 0.1 12.0 0.2 5.5 6.4 0.0 2.3 1 1 1 2 2 2 0 Surface lipoprotein of Spirochaetales order DUF4401 PF14351.1 gi|55377109|ref|YP_134959.1| - 0.11 11.4 9.7 0.16 10.9 6.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) ADH_zinc_N PF00107.21 gi|55377110|ref|YP_134960.1| - 2.1e-28 98.4 0.4 3.5e-28 97.7 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55377110|ref|YP_134960.1| - 1.1e-26 92.7 0.3 2.9e-26 91.3 0.2 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain 2-Hacid_dh_C PF02826.14 gi|55377110|ref|YP_134960.1| - 0.0016 17.6 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_11 PF08241.7 gi|55377110|ref|YP_134960.1| - 0.0056 17.1 0.1 0.015 15.7 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|55377110|ref|YP_134960.1| - 0.012 15.2 0.2 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|55377110|ref|YP_134960.1| - 0.042 13.4 0.2 0.059 12.9 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AIRS_C PF02769.17 gi|55377110|ref|YP_134960.1| - 0.051 13.5 0.9 0.12 12.4 0.6 1.7 1 1 0 1 1 1 0 AIR synthase related protein, C-terminal domain TrkA_N PF02254.13 gi|55377110|ref|YP_134960.1| - 0.11 12.5 0.5 0.32 11.0 0.2 1.9 2 0 0 2 2 2 0 TrkA-N domain Lyase_1 PF00206.15 gi|55377111|ref|YP_134961.1| - 1e-51 175.9 0.0 1.4e-51 175.5 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|55377111|ref|YP_134961.1| - 1.9e-41 140.5 0.0 4.3e-41 139.3 0.0 1.6 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal MFS_1 PF07690.11 gi|55377112|ref|YP_134962.1| - 1.6e-52 178.3 54.0 1.4e-27 96.3 16.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|55377112|ref|YP_134962.1| - 0.00075 19.2 0.3 0.033 13.9 0.0 3.0 1 1 1 2 2 2 1 MFS_1 like family OATP PF03137.15 gi|55377112|ref|YP_134962.1| - 0.78 7.7 11.2 0.75 7.7 0.8 2.2 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Pribosyltran PF00156.22 gi|55377113|ref|YP_134963.1| - 8e-21 74.0 0.1 1.1e-20 73.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|55377113|ref|YP_134963.1| - 0.00065 18.9 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|55377113|ref|YP_134963.1| - 0.013 14.8 0.0 0.12 11.6 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase Peptidase_M20 PF01546.23 gi|55377114|ref|YP_134964.1| - 1.6e-26 92.9 0.4 2.2e-26 92.5 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|55377114|ref|YP_134964.1| - 9e-22 76.9 0.0 1.5e-21 76.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Orn_Arg_deC_N PF02784.11 gi|55377115|ref|YP_134965.1| - 1.9e-37 128.8 0.0 2.5e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|55377115|ref|YP_134965.1| - 6.4e-18 64.5 0.0 1e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|55377115|ref|YP_134965.1| - 3.5e-06 26.7 0.1 6.3e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TFX_C PF14601.1 gi|55377116|ref|YP_134966.1| - 1.9e-29 101.2 0.1 2.7e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|55377116|ref|YP_134966.1| - 2.6e-06 26.6 0.9 4.1e-06 26.0 0.6 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|55377116|ref|YP_134966.1| - 0.0037 17.4 0.3 0.0086 16.2 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55377116|ref|YP_134966.1| - 0.0081 15.9 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|55377116|ref|YP_134966.1| - 0.014 15.3 0.1 0.05 13.6 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|55377116|ref|YP_134966.1| - 0.031 14.0 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|55377116|ref|YP_134966.1| - 0.065 12.7 0.1 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF134 PF02001.11 gi|55377116|ref|YP_134966.1| - 0.085 12.7 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 KH_1 PF00013.24 gi|55377116|ref|YP_134966.1| - 0.11 12.1 1.2 12 5.6 0.0 2.9 2 1 1 3 3 3 0 KH domain GerE PF00196.14 gi|55377116|ref|YP_134966.1| - 0.13 11.6 0.3 0.21 10.9 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|55377116|ref|YP_134966.1| - 0.14 11.8 0.2 0.28 10.8 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Aldedh PF00171.17 gi|55377118|ref|YP_134968.1| - 9e-178 591.3 0.0 1e-177 591.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|55377118|ref|YP_134968.1| - 0.058 12.6 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) AARP2CN PF08142.7 gi|55377119|ref|YP_134969.1| - 0.2 11.1 0.4 0.44 10.1 0.2 1.6 1 1 0 1 1 1 0 AARP2CN (NUC121) domain THDPS_N_2 PF14805.1 gi|55377122|ref|YP_134971.1| - 3.1e-20 71.8 0.4 4.5e-20 71.2 0.3 1.2 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|55377122|ref|YP_134971.1| - 3.4e-12 45.2 4.4 0.00014 21.2 0.4 3.5 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55377122|ref|YP_134971.1| - 1.7e-05 24.3 10.7 0.00021 20.7 0.5 3.4 2 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Glyco_hydro_97 PF10566.4 gi|55377121|ref|YP_134972.1| - 1.7e-73 247.0 1.6 2e-73 246.8 0.4 1.6 2 0 0 2 2 2 1 Glycoside hydrolase 97 GH97_N PF14508.1 gi|55377121|ref|YP_134972.1| - 4.8e-68 228.9 0.0 7.3e-68 228.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal RicinB_lectin_2 PF14200.1 gi|55377121|ref|YP_134972.1| - 2.3e-33 114.7 10.4 4.3e-27 94.5 2.8 4.0 4 1 1 5 5 5 2 Ricin-type beta-trefoil lectin domain-like GH97_C PF14509.1 gi|55377121|ref|YP_134972.1| - 3.8e-30 104.0 0.1 1.9e-29 101.7 0.1 2.3 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Ricin_B_lectin PF00652.17 gi|55377121|ref|YP_134972.1| - 7.1e-20 71.2 1.4 7.1e-20 71.2 1.0 2.8 2 1 0 2 2 2 1 Ricin-type beta-trefoil lectin domain CBM_6 PF03422.10 gi|55377121|ref|YP_134972.1| - 1.5e-05 25.1 2.0 1.5e-05 25.1 1.4 4.4 4 1 0 4 4 4 1 Carbohydrate binding module (family 6) DapB_C PF05173.9 gi|55377123|ref|YP_134973.1| - 1.3e-36 125.2 0.0 2.1e-36 124.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|55377123|ref|YP_134973.1| - 3.8e-23 81.7 1.0 1.4e-22 79.9 1.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|55377123|ref|YP_134973.1| - 0.00014 20.9 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase CoA_binding PF02629.14 gi|55377123|ref|YP_134973.1| - 0.0034 17.8 4.1 0.006 17.0 2.9 1.4 1 0 0 1 1 1 1 CoA binding domain RmlD_sub_bind PF04321.12 gi|55377123|ref|YP_134973.1| - 0.013 14.3 1.4 0.054 12.3 1.0 1.9 1 1 0 1 1 1 0 RmlD substrate binding domain Peripla_BP_6 PF13458.1 gi|55377123|ref|YP_134973.1| - 0.027 13.8 0.9 0.039 13.3 0.6 1.3 1 0 0 1 1 1 0 Periplasmic binding protein NAD_binding_10 PF13460.1 gi|55377123|ref|YP_134973.1| - 0.031 14.2 2.3 0.047 13.6 1.6 1.3 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_3 PF03447.11 gi|55377123|ref|YP_134973.1| - 0.044 14.1 1.0 0.089 13.1 0.7 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|55377124|ref|YP_134974.1| - 9.1e-95 316.5 0.0 1e-94 316.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|55377124|ref|YP_134974.1| - 0.0073 15.4 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NYN PF01936.13 gi|55377125|ref|YP_134975.1| - 2.1e-37 128.6 0.1 2.5e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.14 gi|55377125|ref|YP_134975.1| - 0.023 12.9 0.1 0.03 12.5 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Clathrin PF00637.15 gi|55377125|ref|YP_134975.1| - 0.053 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS TGT_C2 PF14810.1 gi|55377126|ref|YP_134976.1| - 2.5e-22 78.4 0.2 4.7e-22 77.6 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|55377126|ref|YP_134976.1| - 1.8e-13 50.0 0.0 2.3e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 PUA domain FAP PF07174.6 gi|55377127|ref|YP_134977.1| - 0.28 10.4 7.4 0.34 10.1 5.1 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) Mem_trans PF03547.13 gi|55377128|ref|YP_134978.1| - 7.6e-21 73.8 15.3 4.4e-14 51.5 7.6 2.0 1 1 1 2 2 2 2 Membrane transport protein Arv1 PF04161.8 gi|55377128|ref|YP_134978.1| - 0.15 11.9 0.3 0.33 10.8 0.1 1.5 1 1 1 2 2 2 0 Arv1-like family DUF1467 PF07330.7 gi|55377128|ref|YP_134978.1| - 0.25 11.1 6.4 0.07 12.9 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1467) Yip1 PF04893.12 gi|55377128|ref|YP_134978.1| - 4.1 6.8 28.7 22 4.5 12.9 3.1 1 1 1 2 2 2 0 Yip1 domain NAC PF01849.13 gi|55377129|ref|YP_134979.1| - 3.2e-19 68.2 0.5 5.4e-19 67.4 0.3 1.4 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|55377129|ref|YP_134979.1| - 7e-07 28.9 1.2 7e-07 28.9 0.9 2.5 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|55377129|ref|YP_134979.1| - 6.7e-05 22.3 0.3 0.00012 21.5 0.2 1.5 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.11 gi|55377129|ref|YP_134979.1| - 0.038 13.4 0.2 0.081 12.4 0.2 1.5 1 0 0 1 1 1 0 CUE domain IF2_N PF04760.10 gi|55377129|ref|YP_134979.1| - 2.3 7.9 4.8 4 7.1 0.0 2.8 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region Methyltransf_18 PF12847.2 gi|55377130|ref|YP_134980.1| - 8e-14 52.1 0.0 1.1e-13 51.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|55377130|ref|YP_134980.1| - 3.5e-12 46.3 0.0 1.4e-08 34.5 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|55377130|ref|YP_134980.1| - 8e-11 41.9 0.2 4.9e-10 39.4 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55377130|ref|YP_134980.1| - 3.9e-09 36.2 0.0 4.8e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|55377130|ref|YP_134980.1| - 4.1e-07 29.7 0.1 5.2e-07 29.4 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|55377130|ref|YP_134980.1| - 8.7e-07 28.4 0.1 1.7e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|55377130|ref|YP_134980.1| - 1.1e-06 28.0 0.2 1.2e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|55377130|ref|YP_134980.1| - 1.5e-06 27.4 0.0 2e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|55377130|ref|YP_134980.1| - 2.3e-05 24.1 0.0 3.5e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|55377130|ref|YP_134980.1| - 3.2e-05 23.0 0.0 3.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|55377130|ref|YP_134980.1| - 3.5e-05 24.5 0.1 5.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|55377130|ref|YP_134980.1| - 0.00088 18.4 0.0 0.001 18.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|55377130|ref|YP_134980.1| - 0.00097 19.5 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|55377130|ref|YP_134980.1| - 0.0048 16.4 0.0 0.0051 16.3 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|55377130|ref|YP_134980.1| - 0.026 14.9 0.0 0.038 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|55377130|ref|YP_134980.1| - 0.038 13.5 0.1 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TFIIS_C PF01096.13 gi|55377133|ref|YP_134983.1| - 2.8e-17 62.0 5.5 2.8e-17 62.0 3.8 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|55377133|ref|YP_134983.1| - 6.3e-08 32.1 1.6 6.3e-08 32.1 1.1 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|55377133|ref|YP_134983.1| - 8.4e-07 28.8 9.9 0.0002 21.1 0.6 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|55377133|ref|YP_134983.1| - 4.4e-06 26.4 10.7 0.00014 21.5 0.7 2.4 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|55377133|ref|YP_134983.1| - 2.4e-05 24.0 8.4 0.00012 21.8 0.5 2.6 2 1 1 3 3 3 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|55377133|ref|YP_134983.1| - 6.3e-05 22.5 12.6 0.0044 16.6 1.3 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|55377133|ref|YP_134983.1| - 0.00015 20.9 12.3 0.0004 19.6 0.2 3.3 2 2 0 2 2 2 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|55377133|ref|YP_134983.1| - 0.0015 18.2 9.7 0.14 11.9 0.4 3.6 3 1 0 3 3 3 2 PhnA Zinc-Ribbon Nudix_N_2 PF14803.1 gi|55377133|ref|YP_134983.1| - 0.0032 17.1 12.3 0.15 11.7 2.2 3.8 2 2 0 2 2 2 1 Nudix N-terminal HypA PF01155.14 gi|55377133|ref|YP_134983.1| - 0.01 15.4 12.1 0.024 14.3 1.3 2.7 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|55377133|ref|YP_134983.1| - 0.012 15.3 8.5 0.18 11.5 0.8 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DUF2752 PF10825.3 gi|55377133|ref|YP_134983.1| - 0.02 14.9 0.4 0.055 13.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) FdhE PF04216.7 gi|55377133|ref|YP_134983.1| - 0.056 13.1 0.4 0.056 13.1 0.3 2.5 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation TerY-C PF15616.1 gi|55377133|ref|YP_134983.1| - 0.061 13.2 9.3 0.054 13.4 0.8 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain DUF4428 PF14471.1 gi|55377133|ref|YP_134983.1| - 0.074 12.8 0.2 0.074 12.8 0.2 2.3 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) Lar_restr_allev PF14354.1 gi|55377133|ref|YP_134983.1| - 0.11 12.8 13.5 0.12 12.7 0.9 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-RING_4 PF14570.1 gi|55377133|ref|YP_134983.1| - 0.19 11.3 10.3 8.6 6.0 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Rubredoxin PF00301.15 gi|55377133|ref|YP_134983.1| - 0.22 11.4 8.9 1.1 9.1 0.2 3.7 3 1 1 4 4 4 0 Rubredoxin SprT-like PF10263.4 gi|55377133|ref|YP_134983.1| - 0.23 11.0 2.1 0.48 10.0 1.5 1.7 1 1 0 1 1 1 0 SprT-like family zf-ISL3 PF14690.1 gi|55377133|ref|YP_134983.1| - 0.31 11.0 7.9 0.94 9.5 0.0 3.7 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|55377133|ref|YP_134983.1| - 0.75 9.6 9.2 1.5 8.6 0.5 2.7 2 1 0 2 2 2 0 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|55377133|ref|YP_134983.1| - 0.82 9.3 11.6 5.7 6.6 4.0 3.7 2 2 1 3 3 3 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|55377133|ref|YP_134983.1| - 0.82 8.9 4.8 0.19 11.1 1.0 1.7 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger UPF0547 PF10571.4 gi|55377133|ref|YP_134983.1| - 0.83 9.4 13.7 1.1 9.0 0.0 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|55377133|ref|YP_134983.1| - 0.98 8.9 11.4 9.7 5.7 0.0 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-UBP PF02148.14 gi|55377133|ref|YP_134983.1| - 1 9.5 6.1 1.2 9.3 0.6 2.3 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Ribosomal_S27 PF01599.14 gi|55377133|ref|YP_134983.1| - 1 9.2 5.3 1.4 8.7 1.5 2.4 2 0 0 2 2 2 0 Ribosomal protein S27a zf-RING_5 PF14634.1 gi|55377133|ref|YP_134983.1| - 1.1 9.0 10.4 8 6.2 0.8 2.9 2 2 1 3 3 3 0 zinc-RING finger domain Terminase_GpA PF05876.7 gi|55377133|ref|YP_134983.1| - 1.1 7.5 9.8 0.052 11.9 2.5 1.7 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) DUF2072 PF09845.4 gi|55377133|ref|YP_134983.1| - 2 8.3 10.3 5.8 6.8 1.3 2.5 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) GFA PF04828.9 gi|55377133|ref|YP_134983.1| - 2 8.3 12.9 4.1 7.4 0.1 3.7 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.1 gi|55377133|ref|YP_134983.1| - 2.2 8.0 12.1 6.1 6.6 4.2 3.5 2 2 2 4 4 4 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|55377133|ref|YP_134983.1| - 2.9 7.4 10.2 5.7 6.5 0.2 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Mut7-C PF01927.11 gi|55377133|ref|YP_134983.1| - 3.1 7.7 6.2 7.4 6.5 3.5 1.9 1 1 1 2 2 2 0 Mut7-C RNAse domain Zn-ribbon_8 PF09723.5 gi|55377133|ref|YP_134983.1| - 3.9 7.5 16.1 4.9 7.1 0.4 3.8 2 2 0 3 3 3 0 Zinc ribbon domain DUF3268 PF11672.3 gi|55377133|ref|YP_134983.1| - 4.1 7.5 5.9 0.72 9.9 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3268) DUF3797 PF12677.2 gi|55377133|ref|YP_134983.1| - 4.3 7.0 11.8 4.5 6.9 2.3 3.2 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) Ribosomal_L37e PF01907.14 gi|55377133|ref|YP_134983.1| - 4.5 7.1 7.2 1.6 8.6 0.5 2.6 3 0 0 3 3 2 0 Ribosomal protein L37e zf-B_box PF00643.19 gi|55377133|ref|YP_134983.1| - 5.2 7.0 9.9 59 3.6 1.2 3.8 3 1 0 3 3 3 0 B-box zinc finger zinc_ribbon_2 PF13240.1 gi|55377133|ref|YP_134983.1| - 6.2 6.4 17.5 1 8.9 0.6 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55377133|ref|YP_134983.1| - 7.1 5.9 17.8 2.5 7.4 0.3 4.0 3 1 0 3 3 3 0 zinc-ribbon domain DUF2082 PF09855.4 gi|55377133|ref|YP_134983.1| - 10 6.0 9.5 1.6 8.6 0.9 3.0 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) MFS_1 PF07690.11 gi|55377136|ref|YP_134986.1| - 0.017 13.8 0.8 0.02 13.5 0.5 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily Creatininase PF02633.9 gi|55377138|ref|YP_134988.1| - 7.5e-68 228.1 0.1 8.4e-68 227.9 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Alpha-amylase PF00128.19 gi|55377139|ref|YP_134989.1| - 2.4e-98 329.4 3.5 3.8e-98 328.7 2.4 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain hDGE_amylase PF14701.1 gi|55377139|ref|YP_134989.1| - 0.0041 16.0 0.0 0.0063 15.4 0.0 1.2 1 0 0 1 1 1 1 glucanotransferase domain of human glycogen debranching enzyme Peptidase_M24 PF00557.19 gi|55377140|ref|YP_134990.1| - 1.3e-17 64.0 0.9 1.3e-17 64.0 0.6 1.4 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|55377140|ref|YP_134990.1| - 0.017 15.6 0.1 0.1 13.0 0.1 2.2 1 1 0 1 1 1 0 Creatinase/Prolidase N-terminal domain IU_nuc_hydro PF01156.14 gi|55377141|ref|YP_134991.1| - 7.8e-78 261.8 0.1 8.8e-78 261.6 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase OCD_Mu_crystall PF02423.10 gi|55377142|ref|YP_134992.1| - 4.6e-95 318.0 0.7 5.3e-95 317.7 0.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|55377142|ref|YP_134992.1| - 0.027 14.5 0.1 0.053 13.6 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase S1 PF00575.18 gi|55377143|ref|YP_134993.1| - 0.00065 19.7 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 2 2 S1 RNA binding domain TRAM PF01938.15 gi|55377143|ref|YP_134993.1| - 0.03 14.0 0.3 0.04 13.7 0.2 1.2 1 0 0 1 1 1 0 TRAM domain Na_H_antiporter PF03553.9 gi|55377144|ref|YP_134994.1| - 5.5e-39 134.0 50.1 1.2e-30 106.6 14.5 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.13 gi|55377145|ref|YP_134995.1| - 1.2e-26 92.8 0.0 3.1e-26 91.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_5 PF01022.15 gi|55377145|ref|YP_134995.1| - 4.3e-08 32.6 0.2 7.8e-08 31.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|55377145|ref|YP_134995.1| - 5e-08 32.3 0.8 2.8e-07 30.0 0.2 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55377145|ref|YP_134995.1| - 4.7e-07 29.0 0.1 1.2e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55377145|ref|YP_134995.1| - 8.6e-06 25.3 0.9 0.00038 20.0 0.1 2.9 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|55377145|ref|YP_134995.1| - 4.5e-05 23.1 0.2 0.00011 21.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55377145|ref|YP_134995.1| - 6e-05 22.6 0.1 0.00014 21.5 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|55377145|ref|YP_134995.1| - 0.00064 19.2 0.2 0.0083 15.6 0.1 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|55377145|ref|YP_134995.1| - 0.00069 19.2 0.1 0.0042 16.7 0.1 2.3 3 0 0 3 3 2 1 HTH domain TrmB PF01978.14 gi|55377145|ref|YP_134995.1| - 0.006 16.2 0.1 0.077 12.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|55377145|ref|YP_134995.1| - 0.0066 16.4 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|55377145|ref|YP_134995.1| - 0.02 14.4 0.1 0.074 12.6 0.1 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_DeoR PF08220.7 gi|55377145|ref|YP_134995.1| - 0.035 13.6 0.1 0.089 12.3 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|55377145|ref|YP_134995.1| - 0.053 13.8 0.4 0.13 12.6 0.1 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|55377145|ref|YP_134995.1| - 0.067 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|55377145|ref|YP_134995.1| - 0.078 12.9 0.1 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|55377145|ref|YP_134995.1| - 0.11 12.3 0.6 0.2 11.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_40 PF14493.1 gi|55377145|ref|YP_134995.1| - 0.13 12.4 0.1 0.44 10.7 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain Cullin_Nedd8 PF10557.4 gi|55377145|ref|YP_134995.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Cullin protein neddylation domain HTH_10 PF04967.7 gi|55377146|ref|YP_134996.1| - 2.9e-20 71.6 0.1 5.9e-20 70.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|55377146|ref|YP_134996.1| - 0.0073 15.6 0.0 0.032 13.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|55377146|ref|YP_134996.1| - 0.013 14.9 0.1 0.48 9.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|55377146|ref|YP_134996.1| - 0.02 14.7 0.0 0.06 13.1 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|55377146|ref|YP_134996.1| - 0.025 14.2 0.0 0.083 12.5 0.0 1.8 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|55377146|ref|YP_134996.1| - 0.027 13.7 0.2 0.061 12.6 0.2 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 Coat_F PF07875.7 gi|55377146|ref|YP_134996.1| - 0.039 14.0 0.1 0.14 12.3 0.0 2.0 2 0 0 2 2 1 0 Coat F domain HTH_IclR PF09339.5 gi|55377146|ref|YP_134996.1| - 0.041 13.4 0.3 0.23 11.0 0.0 2.4 4 0 0 4 4 4 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|55377146|ref|YP_134996.1| - 0.061 12.8 0.0 0.2 11.2 0.0 1.9 2 1 0 2 2 2 0 LexA DNA binding domain MarR_2 PF12802.2 gi|55377146|ref|YP_134996.1| - 0.07 12.8 0.0 0.29 10.8 0.0 2.2 1 1 0 1 1 1 0 MarR family TetR_N PF00440.18 gi|55377146|ref|YP_134996.1| - 0.072 12.7 0.1 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family UPF0122 PF04297.9 gi|55377146|ref|YP_134996.1| - 0.076 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF1611 PF07755.6 gi|55377147|ref|YP_134997.1| - 7.2e-94 313.8 0.4 8.6e-94 313.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) MR_MLE_C PF13378.1 gi|55377148|ref|YP_134998.1| - 2e-18 66.3 1.1 2e-18 66.3 0.7 1.9 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55377148|ref|YP_134998.1| - 5.8e-16 58.5 0.0 5.8e-16 58.5 0.0 2.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|55377148|ref|YP_134998.1| - 6e-13 49.1 0.5 2.2e-12 47.3 0.4 2.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Bactofilin PF04519.8 gi|55377149|ref|YP_134999.1| - 1.3e-09 37.9 7.2 2.6e-08 33.7 0.5 3.3 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|55377149|ref|YP_134999.1| - 3.6e-05 23.0 12.9 0.0022 17.3 0.1 6.0 4 3 3 7 7 7 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55377149|ref|YP_134999.1| - 0.18 11.3 12.3 0.98 9.0 1.9 4.1 5 1 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF1396 PF07161.8 gi|55377150|ref|YP_135000.1| - 0.0012 18.4 0.9 0.0023 17.6 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1396) DUF4440 PF14534.1 gi|55377150|ref|YP_135000.1| - 0.22 11.7 3.1 0.24 11.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) Glyco_transf_20 PF00982.16 gi|55377151|ref|YP_135001.1| - 6.5e-115 384.2 0.0 7.9e-115 384.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.15 gi|55377151|ref|YP_135001.1| - 0.00053 19.4 0.0 0.31 10.4 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 MAF_flag10 PF01973.13 gi|55377152|ref|YP_135002.1| - 2.4e-24 85.7 0.0 3e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Bac_luciferase PF00296.15 gi|55377153|ref|YP_135003.1| - 1.7e-72 244.1 3.3 2.2e-72 243.7 2.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PALP PF00291.20 gi|55377153|ref|YP_135003.1| - 0.03 13.5 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Multi_Drug_Res PF00893.14 gi|55377154|ref|YP_135004.1| - 1.2e-26 93.0 0.8 1.5e-26 92.6 0.6 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|55377154|ref|YP_135004.1| - 1.8e-06 28.1 4.2 2.1e-06 27.8 2.9 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|55377154|ref|YP_135004.1| - 0.0012 18.8 6.0 0.0034 17.3 4.2 1.9 1 1 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|55377154|ref|YP_135004.1| - 0.14 11.7 4.9 0.061 12.9 1.5 1.7 2 1 0 2 2 2 0 Triose-phosphate Transporter family HAD_2 PF13419.1 gi|55377155|ref|YP_135005.1| - 3.4e-26 92.5 0.8 4e-26 92.2 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55377155|ref|YP_135005.1| - 1.4e-05 25.5 0.5 3.3e-05 24.3 0.3 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55377155|ref|YP_135005.1| - 0.052 13.2 0.3 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 HAD-hyrolase-like HAD PF12710.2 gi|55377155|ref|YP_135005.1| - 0.056 13.5 0.0 0.068 13.3 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TrkA_N PF02254.13 gi|55377156|ref|YP_135006.1| - 1.2e-26 93.0 0.3 1.2e-26 93.0 0.2 1.5 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|55377156|ref|YP_135006.1| - 9.7e-08 32.2 0.1 2.4e-07 30.9 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|55377156|ref|YP_135006.1| - 2e-06 27.9 0.4 3.6e-06 27.1 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding TrkA_C PF02080.16 gi|55377156|ref|YP_135006.1| - 2.7e-06 26.8 1.6 1.5e-05 24.5 0.3 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|55377156|ref|YP_135006.1| - 2.8e-05 24.4 0.8 0.00096 19.5 0.0 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|55377156|ref|YP_135006.1| - 0.0018 17.9 0.2 0.0051 16.4 0.0 1.8 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|55377156|ref|YP_135006.1| - 0.0023 17.3 0.0 0.0042 16.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.20 gi|55377156|ref|YP_135006.1| - 0.0042 17.0 0.3 0.008 16.1 0.2 1.5 1 0 0 1 1 1 1 short chain dehydrogenase DAO PF01266.19 gi|55377156|ref|YP_135006.1| - 0.0051 15.7 0.1 0.0075 15.2 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|55377156|ref|YP_135006.1| - 0.0056 16.2 0.1 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|55377156|ref|YP_135006.1| - 0.0084 16.2 0.0 0.018 15.1 0.0 1.7 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|55377156|ref|YP_135006.1| - 0.011 15.2 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|55377156|ref|YP_135006.1| - 0.015 15.0 0.1 0.2 11.3 0.0 2.4 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|55377156|ref|YP_135006.1| - 0.024 14.5 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|55377156|ref|YP_135006.1| - 0.025 14.9 0.1 0.043 14.1 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|55377156|ref|YP_135006.1| - 0.027 14.3 0.0 0.042 13.6 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.9 gi|55377156|ref|YP_135006.1| - 0.03 12.9 0.1 0.061 11.9 0.0 1.5 1 1 1 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|55377156|ref|YP_135006.1| - 0.035 14.4 0.1 0.068 13.5 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377156|ref|YP_135006.1| - 0.055 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|55377156|ref|YP_135006.1| - 0.058 12.3 0.1 0.076 11.9 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase AdoHcyase_NAD PF00670.16 gi|55377156|ref|YP_135006.1| - 0.063 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AA_permease_2 PF13520.1 gi|55377157|ref|YP_135007.1| - 4.4e-54 183.6 42.2 5.3e-54 183.3 29.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|55377157|ref|YP_135007.1| - 3e-47 161.0 39.1 3.9e-47 160.6 27.1 1.1 1 0 0 1 1 1 1 Amino acid permease Trp_Tyr_perm PF03222.8 gi|55377157|ref|YP_135007.1| - 0.66 8.7 34.2 0.22 10.3 18.4 2.8 1 1 1 2 2 2 0 Tryptophan/tyrosine permease family TrkA_N PF02254.13 gi|55377158|ref|YP_135008.1| - 4.7e-26 91.0 3.3 4.9e-26 91.0 1.0 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|55377158|ref|YP_135008.1| - 1.5e-08 34.0 0.5 4.7e-08 32.5 0.3 1.9 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|55377158|ref|YP_135008.1| - 7.6e-08 32.5 1.2 1.2e-07 31.9 0.7 1.4 1 1 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|55377158|ref|YP_135008.1| - 3.4e-07 30.5 0.2 7.7e-07 29.4 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|55377158|ref|YP_135008.1| - 1.3e-05 25.3 0.5 2.5e-05 24.4 0.1 1.5 2 0 0 2 2 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|55377158|ref|YP_135008.1| - 8.2e-05 21.8 0.1 0.00015 20.9 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|55377158|ref|YP_135008.1| - 8.3e-05 21.6 0.9 0.00014 20.9 0.6 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|55377158|ref|YP_135008.1| - 0.00022 20.9 0.1 0.0047 16.6 0.0 2.5 2 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|55377158|ref|YP_135008.1| - 0.00027 20.2 0.2 0.00042 19.6 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|55377158|ref|YP_135008.1| - 0.00035 19.9 0.4 0.00086 18.7 0.1 1.8 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|55377158|ref|YP_135008.1| - 0.00075 19.2 0.3 0.0017 18.0 0.2 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|55377158|ref|YP_135008.1| - 0.0019 17.3 0.3 0.0037 16.3 0.2 1.6 1 1 0 1 1 1 1 Thi4 family XdhC_C PF13478.1 gi|55377158|ref|YP_135008.1| - 0.0046 17.2 0.2 0.014 15.6 0.1 1.8 2 1 0 2 2 2 1 XdhC Rossmann domain Glyco_trans_4_4 PF13579.1 gi|55377158|ref|YP_135008.1| - 0.0057 16.7 1.7 2.4 8.2 0.1 2.7 1 1 2 3 3 3 1 Glycosyl transferase 4-like domain Saccharop_dh PF03435.13 gi|55377158|ref|YP_135008.1| - 0.0095 14.9 0.4 0.013 14.5 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox_2 PF07992.9 gi|55377158|ref|YP_135008.1| - 0.01 15.7 0.2 0.015 15.1 0.2 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55377158|ref|YP_135008.1| - 0.013 15.5 0.3 0.06 13.3 0.0 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55377158|ref|YP_135008.1| - 0.015 13.7 0.1 0.023 13.1 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Trp_halogenase PF04820.9 gi|55377158|ref|YP_135008.1| - 0.019 13.6 0.1 0.024 13.2 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase AlaDh_PNT_C PF01262.16 gi|55377158|ref|YP_135008.1| - 0.028 13.9 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.10 gi|55377158|ref|YP_135008.1| - 0.043 13.6 0.2 0.31 10.8 0.1 2.1 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase CPSase_L_chain PF00289.17 gi|55377158|ref|YP_135008.1| - 0.063 13.3 0.3 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ApbA PF02558.11 gi|55377158|ref|YP_135008.1| - 0.064 12.7 0.1 0.15 11.4 0.0 1.7 2 1 0 2 2 1 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.16 gi|55377158|ref|YP_135008.1| - 0.073 12.4 0.1 0.095 12.1 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox_3 PF13738.1 gi|55377158|ref|YP_135008.1| - 0.084 12.9 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.1 gi|55377158|ref|YP_135008.1| - 0.087 12.5 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Rossmann-like PF10727.4 gi|55377158|ref|YP_135008.1| - 0.092 12.4 0.7 6.6 6.4 0.0 2.5 2 1 0 2 2 2 0 Rossmann-like domain RrnaAD PF00398.15 gi|55377158|ref|YP_135008.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Pterin_bind PF00809.17 gi|55377159|ref|YP_135009.1| - 4.2e-30 104.6 0.0 7e-30 103.9 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme HATPase_c PF02518.21 gi|55377160|ref|YP_135010.1| - 1e-13 50.9 0.3 2.6e-13 49.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|55377160|ref|YP_135010.1| - 2.9e-11 43.5 0.1 5.9e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|55377160|ref|YP_135010.1| - 6.2e-11 42.1 0.1 1.7e-10 40.7 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55377160|ref|YP_135010.1| - 7.1e-08 33.0 0.1 1.4e-07 32.0 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|55377160|ref|YP_135010.1| - 2e-05 24.7 0.0 5.9e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|55377160|ref|YP_135010.1| - 0.0031 17.2 0.5 0.0067 16.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain MukE PF04288.8 gi|55377160|ref|YP_135010.1| - 0.0035 16.1 0.1 0.0059 15.4 0.1 1.3 1 0 0 1 1 1 1 MukE-like family APH PF01636.18 gi|55377161|ref|YP_135011.1| - 1.9e-21 76.8 1.9 1.9e-21 76.8 1.3 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|55377161|ref|YP_135011.1| - 2.3e-08 33.3 0.1 6e-08 31.9 0.0 1.7 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.6 gi|55377161|ref|YP_135011.1| - 0.00084 18.0 0.0 0.0012 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.15 gi|55377161|ref|YP_135011.1| - 0.011 14.8 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase PfkB PF00294.19 gi|55377162|ref|YP_135012.1| - 4.7e-45 154.0 4.7 8e-45 153.2 3.2 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase CARDB PF07705.6 gi|55377163|ref|YP_135013.1| - 2.5e-06 27.4 12.3 0.23 11.5 0.3 4.9 4 2 1 5 5 5 3 CARDB Transglut_C PF00927.17 gi|55377163|ref|YP_135013.1| - 5.6e-06 26.3 0.2 0.024 14.6 0.0 3.8 4 0 0 4 4 4 2 Transglutaminase family, C-terminal ig like domain HtaA PF04213.8 gi|55377163|ref|YP_135013.1| - 0.12 12.6 3.9 0.1 12.7 0.2 2.3 2 1 0 2 2 2 0 Htaa ABC_tran PF00005.22 gi|55377164|ref|YP_135014.1| - 1.1e-34 119.6 0.0 1.5e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377164|ref|YP_135014.1| - 3.6e-12 46.8 0.0 3e-06 27.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|55377164|ref|YP_135014.1| - 1.1e-05 25.5 0.3 8.5e-05 22.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55377164|ref|YP_135014.1| - 8.5e-05 22.0 0.4 0.053 12.9 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55377164|ref|YP_135014.1| - 0.001 18.5 0.1 0.0022 17.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55377164|ref|YP_135014.1| - 0.0016 17.6 0.1 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|55377164|ref|YP_135014.1| - 0.002 18.1 0.6 0.0037 17.2 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|55377164|ref|YP_135014.1| - 0.003 16.8 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|55377164|ref|YP_135014.1| - 0.0034 16.4 0.0 0.99 8.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|55377164|ref|YP_135014.1| - 0.0036 16.7 0.2 0.12 11.7 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain TIR-like PF10137.4 gi|55377164|ref|YP_135014.1| - 0.006 16.2 0.0 0.031 13.8 0.0 2.0 2 0 0 2 2 2 1 Predicted nucleotide-binding protein containing TIR-like domain AAA_18 PF13238.1 gi|55377164|ref|YP_135014.1| - 0.0062 16.8 0.3 0.031 14.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|55377164|ref|YP_135014.1| - 0.021 15.6 1.2 0.028 15.2 0.3 1.8 2 1 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|55377164|ref|YP_135014.1| - 0.03 14.1 0.5 0.086 12.7 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|55377164|ref|YP_135014.1| - 0.031 14.6 0.4 0.059 13.6 0.2 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|55377164|ref|YP_135014.1| - 0.042 12.7 0.2 0.058 12.2 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|55377164|ref|YP_135014.1| - 0.044 13.2 0.4 0.088 12.2 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|55377164|ref|YP_135014.1| - 0.064 13.1 0.1 0.59 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|55377164|ref|YP_135014.1| - 0.073 12.8 0.1 0.25 11.0 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|55377164|ref|YP_135014.1| - 0.078 12.6 0.0 0.4 10.3 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|55377164|ref|YP_135014.1| - 0.084 12.4 0.1 0.17 11.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|55377164|ref|YP_135014.1| - 0.088 12.7 0.3 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|55377164|ref|YP_135014.1| - 0.092 12.4 0.1 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|55377164|ref|YP_135014.1| - 0.12 12.5 0.1 2.5 8.3 0.0 2.4 2 1 1 3 3 3 0 RNA helicase IstB_IS21 PF01695.12 gi|55377164|ref|YP_135014.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|55377164|ref|YP_135014.1| - 0.14 11.7 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|55377164|ref|YP_135014.1| - 0.56 10.1 2.4 2.3 8.1 1.7 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase MacB_PCD PF12704.2 gi|55377165|ref|YP_135015.1| - 5.7e-27 94.8 0.7 5.7e-27 94.8 0.5 2.6 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|55377165|ref|YP_135015.1| - 1.7e-23 82.6 7.4 1.5e-21 76.3 3.0 2.2 2 0 0 2 2 2 2 FtsX-like permease family PetG PF02529.10 gi|55377165|ref|YP_135015.1| - 0.26 10.8 2.1 0.84 9.2 1.5 1.9 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 BCLP PF12304.3 gi|55377165|ref|YP_135015.1| - 0.62 9.4 0.0 0.62 9.4 0.0 2.4 2 1 1 3 3 3 0 Beta-casein like protein Meth_synt_2 PF01717.13 gi|55377167|ref|YP_135017.1| - 2.1e-79 266.8 0.0 2.5e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|55377167|ref|YP_135017.1| - 1.1e-20 74.1 0.1 4.7e-20 72.0 0.1 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|55377167|ref|YP_135017.1| - 6.9e-06 25.2 0.0 9.6e-06 24.7 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|55377168|ref|YP_135018.1| - 2.3e-26 92.8 0.0 2.6e-23 82.7 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|55377168|ref|YP_135018.1| - 4e-18 65.4 0.1 4.7e-18 65.2 0.1 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain NAD_binding_5 PF07994.7 gi|55377168|ref|YP_135018.1| - 0.033 13.6 0.9 0.29 10.6 0.1 2.1 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Methyltransf_26 PF13659.1 gi|55377169|ref|YP_135019.1| - 1.2e-19 70.4 0.3 1.9e-19 69.7 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55377169|ref|YP_135019.1| - 1.7e-11 43.7 0.0 2.4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|55377169|ref|YP_135019.1| - 8.1e-10 38.4 0.0 1.1e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377169|ref|YP_135019.1| - 1.6e-09 38.3 0.0 2.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55377169|ref|YP_135019.1| - 1.3e-08 35.2 0.0 2e-06 28.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377169|ref|YP_135019.1| - 3.1e-07 30.2 0.0 1.9e-06 27.7 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|55377169|ref|YP_135019.1| - 4e-06 26.3 0.0 6.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|55377169|ref|YP_135019.1| - 4e-06 26.1 0.4 6e-06 25.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|55377169|ref|YP_135019.1| - 9.9e-05 22.6 0.0 0.00016 21.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|55377169|ref|YP_135019.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|55377169|ref|YP_135019.1| - 0.00017 22.0 0.0 0.002 18.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|55377169|ref|YP_135019.1| - 0.0016 18.0 0.0 0.0062 16.0 0.0 1.8 2 0 0 2 2 2 1 DNA methylase CMAS PF02353.15 gi|55377169|ref|YP_135019.1| - 0.0029 16.7 0.0 0.0077 15.3 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|55377169|ref|YP_135019.1| - 0.0051 16.2 0.0 0.023 14.1 0.0 1.9 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.1 gi|55377169|ref|YP_135019.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|55377169|ref|YP_135019.1| - 0.029 14.3 0.0 0.067 13.1 0.0 1.6 2 0 0 2 2 2 0 TrkA-N domain FtsJ PF01728.14 gi|55377169|ref|YP_135019.1| - 0.053 13.5 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 FtsJ-like methyltransferase Methyltransf_2 PF00891.13 gi|55377169|ref|YP_135019.1| - 0.11 11.6 0.2 0.16 11.0 0.2 1.2 1 0 0 1 1 1 0 O-methyltransferase Ubie_methyltran PF01209.13 gi|55377169|ref|YP_135019.1| - 0.14 11.2 0.0 4.1 6.4 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.6 gi|55377169|ref|YP_135019.1| - 0.15 10.7 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|55377170|ref|YP_135020.1| - 2.7e-47 161.0 0.0 3e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|55377170|ref|YP_135020.1| - 3.8e-09 36.5 0.4 8.3e-09 35.5 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377170|ref|YP_135020.1| - 2e-07 31.5 0.0 4.4e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55377170|ref|YP_135020.1| - 0.0022 18.4 0.0 0.0048 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55377170|ref|YP_135020.1| - 0.0038 17.6 0.0 0.0091 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377170|ref|YP_135020.1| - 0.0057 16.9 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|55377170|ref|YP_135020.1| - 0.013 14.9 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrkA_N PF02254.13 gi|55377170|ref|YP_135020.1| - 0.054 13.4 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain MTS PF05175.9 gi|55377170|ref|YP_135020.1| - 0.061 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|55377170|ref|YP_135020.1| - 0.081 12.6 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_PK PF05891.7 gi|55377170|ref|YP_135020.1| - 0.18 11.1 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DUF655 PF04919.7 gi|55377171|ref|YP_135021.1| - 3.3e-58 196.3 0.2 4e-58 196.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|55377171|ref|YP_135021.1| - 1.1e-05 25.3 0.1 4.6e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|55377171|ref|YP_135021.1| - 0.00019 21.4 0.0 0.00042 20.2 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|55377171|ref|YP_135021.1| - 0.048 13.3 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|55377172|ref|YP_135022.1| - 3.4e-15 56.0 2.7 3.9e-15 55.8 1.9 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 CbiK PF06180.6 gi|55377172|ref|YP_135022.1| - 0.084 11.9 0.0 0.12 11.4 0.0 1.3 1 1 0 1 1 1 0 Cobalt chelatase (CbiK) DUF1507 PF07408.6 gi|55377172|ref|YP_135022.1| - 0.11 12.2 0.6 0.48 10.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1507) UBN2_3 PF14244.1 gi|55377172|ref|YP_135022.1| - 0.13 11.8 0.1 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type DUF3571 PF12095.3 gi|55377172|ref|YP_135022.1| - 1.3 9.3 5.1 3.1 8.0 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3571) Ribosomal_L21e PF01157.13 gi|55377173|ref|YP_135023.1| - 8.5e-36 121.7 0.1 9.3e-36 121.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e DUF2874 PF11396.3 gi|55377173|ref|YP_135023.1| - 0.12 12.3 0.6 0.19 11.7 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) EF1_GNE PF00736.14 gi|55377174|ref|YP_135024.1| - 2.9e-23 81.3 0.1 3.2e-23 81.2 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|55377175|ref|YP_135025.1| - 1.8e-11 43.8 14.8 1.3e-05 25.1 3.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) C1_3 PF07649.7 gi|55377175|ref|YP_135025.1| - 7.5e-05 22.6 9.6 0.00073 19.5 1.8 2.3 2 0 0 2 2 2 1 C1-like domain Zn_Tnp_IS91 PF14319.1 gi|55377175|ref|YP_135025.1| - 0.003 17.0 9.7 0.0035 16.8 6.7 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.2 gi|55377175|ref|YP_135025.1| - 0.0031 17.2 13.9 0.95 9.3 10.0 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|55377175|ref|YP_135025.1| - 0.004 16.9 12.6 0.73 9.7 1.6 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 PolC_DP2 PF03833.8 gi|55377175|ref|YP_135025.1| - 0.015 12.9 7.4 0.016 12.9 5.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|55377175|ref|YP_135025.1| - 0.016 14.8 11.1 0.019 14.6 4.0 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|55377175|ref|YP_135025.1| - 0.019 14.6 11.3 11 5.8 7.8 2.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HIT PF04438.11 gi|55377175|ref|YP_135025.1| - 0.035 13.7 16.3 0.29 10.8 3.6 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-UBP PF02148.14 gi|55377175|ref|YP_135025.1| - 0.12 12.5 1.2 0.12 12.5 0.9 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein NMDAR2_C PF10565.4 gi|55377175|ref|YP_135025.1| - 0.13 10.9 7.0 0.14 10.8 4.9 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus NMD3 PF04981.8 gi|55377175|ref|YP_135025.1| - 0.14 11.2 8.6 0.16 11.0 6.0 1.0 1 0 0 1 1 1 0 NMD3 family Sgf11 PF08209.6 gi|55377175|ref|YP_135025.1| - 0.15 11.3 0.8 0.15 11.3 0.6 3.7 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|55377175|ref|YP_135025.1| - 0.15 11.5 13.8 1.8 8.0 1.9 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.21 gi|55377175|ref|YP_135025.1| - 0.16 12.3 16.7 1.9 8.9 0.5 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type Desulfoferrod_N PF06397.7 gi|55377175|ref|YP_135025.1| - 0.16 11.3 16.0 4.2 6.8 0.5 4.0 1 1 3 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|55377175|ref|YP_135025.1| - 0.17 11.1 15.4 0.29 10.3 2.7 3.4 1 1 2 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55377175|ref|YP_135025.1| - 0.2 11.2 14.4 0.21 11.1 0.6 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zf-UBR PF02207.15 gi|55377175|ref|YP_135025.1| - 0.22 11.2 12.6 6.6 6.5 8.8 2.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) UPF0547 PF10571.4 gi|55377175|ref|YP_135025.1| - 0.28 10.9 14.2 0.49 10.1 5.7 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|55377175|ref|YP_135025.1| - 0.33 10.8 0.3 0.33 10.8 0.2 2.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Prok-RING_1 PF14446.1 gi|55377175|ref|YP_135025.1| - 0.38 10.5 12.1 0.32 10.7 1.2 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|55377175|ref|YP_135025.1| - 0.39 10.4 12.0 3.8 7.3 0.1 3.8 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_5 PF14634.1 gi|55377175|ref|YP_135025.1| - 0.41 10.4 10.9 1.6 8.5 0.8 2.4 2 1 0 2 2 2 0 zinc-RING finger domain zf-MYND PF01753.13 gi|55377175|ref|YP_135025.1| - 0.49 10.3 10.6 28 4.6 7.6 2.4 1 1 0 1 1 1 0 MYND finger zinc-ribbons_6 PF07191.7 gi|55377175|ref|YP_135025.1| - 0.49 10.2 12.4 4.3 7.1 5.0 2.2 1 1 1 2 2 2 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|55377175|ref|YP_135025.1| - 0.53 10.0 6.2 1.3 8.7 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain FYVE_2 PF02318.11 gi|55377175|ref|YP_135025.1| - 0.61 10.0 8.1 0.67 9.8 5.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Ribosomal_L34e PF01199.13 gi|55377175|ref|YP_135025.1| - 0.65 10.2 5.9 3.9 7.7 0.1 2.5 1 1 2 3 3 3 0 Ribosomal protein L34e Zn_Tnp_IS1595 PF12760.2 gi|55377175|ref|YP_135025.1| - 0.72 9.7 20.3 1.3e+02 2.4 14.1 3.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain IBR PF01485.16 gi|55377175|ref|YP_135025.1| - 0.72 9.7 12.5 11 6.0 9.2 2.1 1 1 0 1 1 1 0 IBR domain zf-B_box PF00643.19 gi|55377175|ref|YP_135025.1| - 0.86 9.5 11.4 21 5.1 7.9 2.4 1 1 0 1 1 1 0 B-box zinc finger RNHCP PF12647.2 gi|55377175|ref|YP_135025.1| - 1 9.2 10.5 1.7 8.5 3.8 2.2 1 1 1 2 2 2 0 RNHCP domain zf-C2HC5 PF06221.8 gi|55377175|ref|YP_135025.1| - 1 9.1 11.8 2.7 7.8 4.7 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Ribosomal_L37ae PF01780.14 gi|55377175|ref|YP_135025.1| - 1.2 9.0 9.5 0.82 9.5 2.5 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family HypA PF01155.14 gi|55377175|ref|YP_135025.1| - 1.2 8.8 11.0 39 3.9 7.6 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2039 PF10217.4 gi|55377175|ref|YP_135025.1| - 1.6 8.7 13.2 0.097 12.6 5.9 1.4 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2039) zf-C2H2_6 PF13912.1 gi|55377175|ref|YP_135025.1| - 1.7 8.6 14.1 6.8 6.7 0.5 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.14 gi|55377175|ref|YP_135025.1| - 2.2 7.8 11.6 4.5 6.8 1.7 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|55377175|ref|YP_135025.1| - 2.9 7.9 19.0 18 5.3 3.3 3.8 1 1 2 3 3 3 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|55377175|ref|YP_135025.1| - 2.9 8.3 16.3 5.7 7.4 1.0 3.7 2 1 2 4 4 4 0 Zinc-finger double domain zf-tcix PF14952.1 gi|55377175|ref|YP_135025.1| - 2.9 7.2 20.4 4 6.8 0.4 3.5 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF1272 PF06906.6 gi|55377175|ref|YP_135025.1| - 3.2 7.6 11.3 29 4.6 7.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|55377175|ref|YP_135025.1| - 3.2 7.3 13.9 12 5.4 2.6 3.5 1 1 1 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55377175|ref|YP_135025.1| - 3.3 7.5 11.9 1.3 8.8 0.1 3.4 2 1 2 4 4 4 0 PhnA Zinc-Ribbon YhfH PF14149.1 gi|55377175|ref|YP_135025.1| - 4 7.3 17.2 5.6 6.8 0.2 3.4 1 1 2 3 3 3 0 YhfH-like protein C1_2 PF03107.11 gi|55377175|ref|YP_135025.1| - 5.4 7.2 9.6 56 3.9 3.6 2.9 1 1 2 3 3 3 0 C1 domain TFIIS_C PF01096.13 gi|55377175|ref|YP_135025.1| - 6.6 6.4 17.8 11 5.7 0.3 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) C1_4 PF07975.7 gi|55377175|ref|YP_135025.1| - 6.8 6.7 12.8 2.1e+02 2.0 8.8 2.8 1 1 0 1 1 1 0 TFIIH C1-like domain zf-AN1 PF01428.11 gi|55377175|ref|YP_135025.1| - 8.4 6.3 14.3 7.3 6.5 2.4 2.8 2 1 0 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|55377175|ref|YP_135025.1| - 8.6 6.3 10.7 4.1 7.3 1.0 2.8 1 1 1 2 2 2 0 CpXC protein DUF2391 PF09622.5 gi|55377176|ref|YP_135026.1| - 0.00014 21.0 3.5 0.00018 20.7 2.4 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Smoothelin PF12510.3 gi|55377176|ref|YP_135026.1| - 0.18 11.6 1.2 0.31 10.9 0.8 1.4 1 0 0 1 1 1 0 Smoothelin cytoskeleton protein 3HCDH_N PF02737.13 gi|55377177|ref|YP_135027.1| - 3.6e-23 82.1 2.5 1e-22 80.6 1.7 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|55377177|ref|YP_135027.1| - 2.1e-14 53.6 0.0 3.8e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|55377177|ref|YP_135027.1| - 2.2e-05 24.2 0.1 3.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|55377177|ref|YP_135027.1| - 3e-05 24.1 3.6 4.9e-05 23.4 2.5 1.4 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|55377177|ref|YP_135027.1| - 0.00017 21.9 0.2 0.00039 20.7 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.8 gi|55377177|ref|YP_135027.1| - 0.0012 18.1 1.9 0.0014 17.9 0.3 1.7 2 0 0 2 2 2 1 NmrA-like family NAD_binding_2 PF03446.10 gi|55377177|ref|YP_135027.1| - 0.012 15.4 1.7 0.022 14.5 0.4 2.1 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|55377177|ref|YP_135027.1| - 0.044 13.6 1.3 0.089 12.7 0.9 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AP_endonuc_2 PF01261.19 gi|55377178|ref|YP_135028.1| - 5.1e-33 114.1 5.0 5.7e-33 114.0 2.8 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|55377178|ref|YP_135028.1| - 1.4e-18 66.1 0.0 2.9e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|55377178|ref|YP_135028.1| - 0.0085 16.0 0.0 0.093 12.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3122) AsnC_trans_reg PF01037.16 gi|55377178|ref|YP_135028.1| - 0.065 12.9 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 AsnC family AIM24 PF01987.12 gi|55377179|ref|YP_135029.1| - 2.6e-63 213.3 0.0 2.9e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 CBS PF00571.23 gi|55377180|ref|YP_135030.1| - 6.6e-22 77.0 2.7 4.4e-12 45.5 0.1 2.9 2 1 0 2 2 2 2 CBS domain IF-2 PF11987.3 gi|55377180|ref|YP_135030.1| - 0.16 11.8 1.7 3.8 7.4 0.3 2.7 1 1 2 3 3 3 0 Translation-initiation factor 2 GFO_IDH_MocA PF01408.17 gi|55377181|ref|YP_135031.1| - 2e-14 54.1 0.0 3.5e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55377181|ref|YP_135031.1| - 1.9e-12 46.9 0.1 3.9e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MMR_HSR1_C PF08438.5 gi|55377182|ref|YP_135032.1| - 9.6e-32 109.4 0.0 1.5e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|55377182|ref|YP_135032.1| - 1.8e-17 63.3 0.0 9.8e-17 60.9 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|55377182|ref|YP_135032.1| - 3.2e-11 42.9 0.0 6.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|55377182|ref|YP_135032.1| - 1.2e-09 37.6 0.0 8.7e-08 31.5 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Histidinol_dh PF00815.15 gi|55377184|ref|YP_135034.1| - 4.3e-147 490.0 4.2 5.2e-147 489.7 2.9 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Toprim_2 PF13155.1 gi|55377184|ref|YP_135034.1| - 0.33 11.2 3.3 1.4 9.2 0.1 2.5 2 1 0 2 2 2 0 Toprim-like PhoD PF09423.5 gi|55377185|ref|YP_135035.1| - 1.9e-144 481.5 2.1 2.5e-144 481.2 1.4 1.1 1 0 0 1 1 1 1 PhoD-like phosphatase EF-hand_7 PF13499.1 gi|55377185|ref|YP_135035.1| - 0.024 14.7 3.9 0.08 13.0 2.7 2.0 1 0 0 1 1 1 0 EF-hand domain pair EF-hand_6 PF13405.1 gi|55377185|ref|YP_135035.1| - 0.36 10.8 4.4 28 4.9 0.0 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|55377185|ref|YP_135035.1| - 0.62 9.5 10.4 6.9 6.2 1.8 3.7 3 0 0 3 3 3 0 EF hand Fe-S_biosyn PF01521.15 gi|55377186|ref|YP_135036.1| - 2.9e-17 62.6 0.0 3.5e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.7 gi|55377187|ref|YP_135037.1| - 3.2e-23 81.5 1.1 3.4e-23 81.4 0.8 1.0 1 0 0 1 1 1 1 Dodecin DUF2693 PF10902.3 gi|55377187|ref|YP_135037.1| - 0.038 13.8 0.1 0.046 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2693) DUF2238 PF09997.4 gi|55377188|ref|YP_135038.1| - 5.3e-05 22.6 1.1 9.4e-05 21.8 0.8 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF3861 PF12977.2 gi|55377189|ref|YP_135039.1| - 0.12 12.5 0.0 7.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3861) ATPase_gene1 PF09527.5 gi|55377189|ref|YP_135039.1| - 8.6 6.2 10.7 2.7 7.8 0.1 3.0 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF457 PF04307.9 gi|55377190|ref|YP_135040.1| - 2.8e-15 56.0 21.5 2.8e-15 56.0 14.9 2.9 2 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) TrbC PF04956.8 gi|55377190|ref|YP_135040.1| - 1.1 9.3 20.4 0.13 12.2 2.2 3.2 3 0 0 3 3 3 0 TrbC/VIRB2 family MS_channel PF00924.13 gi|55377191|ref|YP_135041.1| - 2.6e-13 49.8 2.1 3.4e-13 49.3 1.4 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DNA_RNApol_7kD PF03604.8 gi|55377193|ref|YP_135043.1| - 0.014 14.8 1.1 0.02 14.3 0.8 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|55377193|ref|YP_135043.1| - 0.21 11.1 1.6 0.24 10.9 1.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Nudix_N_2 PF14803.1 gi|55377193|ref|YP_135043.1| - 0.32 10.7 1.6 19 5.0 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_6 PF14599.1 gi|55377193|ref|YP_135043.1| - 0.36 10.6 6.0 0.37 10.6 0.3 2.1 1 1 1 2 2 2 0 Zinc-ribbon zf-RanBP PF00641.13 gi|55377193|ref|YP_135043.1| - 6.9 5.8 7.6 55 2.9 5.3 2.2 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others 5_nucleotid_C PF02872.13 gi|55377194|ref|YP_135044.1| - 6e-30 104.2 0.0 9.9e-30 103.5 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|55377194|ref|YP_135044.1| - 1.9e-07 30.6 0.0 4.5e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|55377194|ref|YP_135044.1| - 1.5e-06 28.1 0.0 3.3e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Usp PF00582.21 gi|55377196|ref|YP_135046.1| - 0.00015 22.0 0.1 0.00022 21.4 0.0 1.3 1 1 0 1 1 1 1 Universal stress protein family DnaI_N PF07319.6 gi|55377196|ref|YP_135046.1| - 0.031 14.4 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus MS_channel PF00924.13 gi|55377197|ref|YP_135047.1| - 1.1e-37 129.3 0.1 1.5e-37 128.9 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel PHO4 PF01384.15 gi|55377197|ref|YP_135047.1| - 3 6.4 9.5 11 4.5 4.6 2.0 1 1 1 2 2 2 0 Phosphate transporter family PAC2 PF09754.4 gi|55377198|ref|YP_135048.1| - 1.4e-28 100.2 0.0 1.8e-28 99.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family UPF0547 PF10571.4 gi|55377199|ref|YP_135049.1| - 4.5e-05 23.0 2.0 0.072 12.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|55377199|ref|YP_135049.1| - 0.00069 18.7 0.2 0.057 12.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|55377199|ref|YP_135049.1| - 0.0021 17.5 1.6 0.18 11.3 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|55377199|ref|YP_135049.1| - 0.0027 17.4 0.4 0.0042 16.8 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|55377199|ref|YP_135049.1| - 0.0036 16.5 1.1 0.0096 15.2 0.8 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|55377199|ref|YP_135049.1| - 0.0039 16.9 0.6 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|55377199|ref|YP_135049.1| - 0.0074 15.7 0.9 0.09 12.2 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|55377199|ref|YP_135049.1| - 0.015 14.9 0.4 0.024 14.3 0.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.1 gi|55377199|ref|YP_135049.1| - 0.017 14.8 0.9 0.16 11.8 0.6 2.0 1 1 0 1 1 1 0 Zinc-ribbon Terminase_GpA PF05876.7 gi|55377199|ref|YP_135049.1| - 0.018 13.4 0.1 0.018 13.4 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) NOB1_Zn_bind PF08772.6 gi|55377199|ref|YP_135049.1| - 0.02 14.6 1.3 0.11 12.3 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-DNA_Pol PF08996.5 gi|55377199|ref|YP_135049.1| - 0.022 14.1 0.1 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger DNA_ligase_ZBD PF03119.11 gi|55377199|ref|YP_135049.1| - 0.034 13.8 3.0 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.3 gi|55377199|ref|YP_135049.1| - 0.036 13.9 0.9 3.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|55377199|ref|YP_135049.1| - 0.044 13.3 0.3 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|55377199|ref|YP_135049.1| - 0.045 13.7 2.1 3.9 7.5 0.2 2.2 2 0 0 2 2 2 0 zinc-finger Nudix_N_2 PF14803.1 gi|55377199|ref|YP_135049.1| - 0.048 13.3 3.5 0.21 11.3 2.4 1.9 1 1 0 1 1 1 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|55377199|ref|YP_135049.1| - 0.058 13.7 1.2 0.085 13.1 0.8 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|55377199|ref|YP_135049.1| - 0.061 13.2 3.6 2 8.4 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|55377199|ref|YP_135049.1| - 0.07 12.8 0.4 5.8 6.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|55377199|ref|YP_135049.1| - 0.079 12.4 0.4 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|55377199|ref|YP_135049.1| - 0.096 12.6 0.8 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.6 gi|55377199|ref|YP_135049.1| - 0.1 12.4 0.3 5.8 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.7 gi|55377199|ref|YP_135049.1| - 0.11 12.3 1.8 5.9 6.7 0.1 2.0 1 1 0 2 2 2 0 zinc-ribbons Elf1 PF05129.8 gi|55377199|ref|YP_135049.1| - 0.11 12.1 0.1 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|55377199|ref|YP_135049.1| - 0.15 12.3 0.1 9.1 6.6 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain GFA PF04828.9 gi|55377199|ref|YP_135049.1| - 0.15 12.0 0.8 0.7 9.8 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2H2 PF00096.21 gi|55377199|ref|YP_135049.1| - 0.34 11.3 1.4 17 5.9 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|55377199|ref|YP_135049.1| - 0.49 10.2 2.9 5.3 6.9 2.0 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|55377199|ref|YP_135049.1| - 0.65 9.7 2.6 3.2 7.5 0.3 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF329 PF03884.9 gi|55377199|ref|YP_135049.1| - 1.5 8.4 3.9 17 5.0 0.2 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF329) TFIIS_C PF01096.13 gi|55377199|ref|YP_135049.1| - 1.5 8.5 5.2 3.6 7.3 1.6 2.7 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|55377199|ref|YP_135049.1| - 2.6 8.0 4.9 21 5.1 0.1 2.5 2 1 0 2 2 2 0 Rubredoxin DUF3367 PF11847.3 gi|55377200|ref|YP_135050.1| - 0.069 11.0 1.0 0.071 11.0 0.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3367) PEMT PF04191.8 gi|55377200|ref|YP_135050.1| - 0.3 11.1 1.8 0.39 10.8 1.3 1.1 1 0 0 1 1 1 0 Phospholipid methyltransferase IF-2B PF01008.12 gi|55377201|ref|YP_135051.1| - 6.6e-50 169.6 0.1 7.7e-50 169.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Sec16_N PF12935.2 gi|55377201|ref|YP_135051.1| - 0.043 13.6 4.9 0.061 13.1 3.4 1.2 1 0 0 1 1 1 0 Vesicle coat trafficking protein Sec16 N-terminus HEAT_2 PF13646.1 gi|55377201|ref|YP_135051.1| - 0.15 12.3 2.7 1.3 9.3 0.2 2.6 3 0 0 3 3 3 0 HEAT repeats DUF1628 PF07790.6 gi|55377202|ref|YP_135052.1| - 6.3e-06 26.8 0.6 3e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DoxX PF07681.7 gi|55377203|ref|YP_135053.1| - 9.7e-08 32.3 7.5 9.7e-08 32.3 5.2 4.0 3 1 0 3 3 3 1 DoxX DoxD PF04173.8 gi|55377203|ref|YP_135053.1| - 0.061 13.0 11.3 0.17 11.5 0.3 3.6 3 1 1 4 4 4 0 TQO small subunit DoxD DNA_primase_S PF01896.14 gi|55377204|ref|YP_135054.1| - 1.3e-23 83.4 0.0 2.1e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Etmic-2 PF06670.6 gi|55377205|ref|YP_135055.1| - 6.6e-05 21.7 2.6 6.6e-05 21.7 1.8 1.6 1 1 0 2 2 2 1 Microneme protein Etmic-2 M20_dimer PF07687.9 gi|55377205|ref|YP_135055.1| - 0.0064 16.2 0.0 2.8 7.7 0.0 2.3 2 0 0 2 2 2 2 Peptidase dimerisation domain DUF1525 PF07511.6 gi|55377205|ref|YP_135055.1| - 0.033 14.1 0.3 0.064 13.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) DUF572 PF04502.8 gi|55377205|ref|YP_135055.1| - 0.17 11.0 2.0 0.23 10.6 1.4 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF572) DUF605 PF04652.11 gi|55377205|ref|YP_135055.1| - 0.56 9.5 12.2 0.66 9.3 8.5 1.2 1 0 0 1 1 1 0 Vta1 like Metal_resist PF13801.1 gi|55377205|ref|YP_135055.1| - 4.9 7.1 13.1 0.085 12.8 3.8 2.0 2 1 0 2 2 2 0 Heavy-metal resistance DUF2975 PF11188.3 gi|55377206|ref|YP_135056.1| - 1.2 8.8 12.7 3.9 7.1 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) RDD PF06271.7 gi|55377206|ref|YP_135056.1| - 1.4 8.8 7.7 3.1 7.6 5.3 1.5 1 1 0 1 1 1 0 RDD family DUF2628 PF10947.3 gi|55377206|ref|YP_135056.1| - 7.9 6.3 9.6 0.48 10.2 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) Trypsin_2 PF13365.1 gi|55377207|ref|YP_135057.1| - 3.1e-18 65.9 1.9 5.7e-18 65.0 1.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|55377207|ref|YP_135057.1| - 5.8e-12 45.6 0.3 3e-11 43.3 0.2 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|55377207|ref|YP_135057.1| - 6e-12 45.2 0.2 1.6e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 PDZ domain Pico_P2A PF00947.14 gi|55377207|ref|YP_135057.1| - 0.0033 17.2 0.4 0.0093 15.7 0.0 1.8 2 0 0 2 2 2 1 Picornavirus core protein 2A YbhQ PF11076.3 gi|55377208|ref|YP_135058.1| - 0.017 14.7 0.3 0.019 14.5 0.2 1.0 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ PetL PF05115.9 gi|55377208|ref|YP_135058.1| - 0.13 12.2 3.2 6.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) E1-E2_ATPase PF00122.15 gi|55377209|ref|YP_135059.1| - 3.8e-60 202.7 0.4 6.5e-60 202.0 0.3 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|55377209|ref|YP_135059.1| - 2.9e-48 165.1 5.5 5.9e-48 164.1 3.8 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|55377209|ref|YP_135059.1| - 8e-32 109.1 2.1 1.8e-14 53.5 0.0 3.6 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.2 gi|55377209|ref|YP_135059.1| - 6.6e-14 52.5 0.7 1.7e-13 51.1 0.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|55377209|ref|YP_135059.1| - 0.0035 16.9 1.6 0.0079 15.8 1.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pox_A14 PF05767.7 gi|55377209|ref|YP_135059.1| - 0.18 11.7 0.3 0.44 10.5 0.2 1.5 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 Peripla_BP_2 PF01497.13 gi|55377210|ref|YP_135060.1| - 3.7e-14 52.4 0.0 6.5e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 Periplasmic binding protein Myco_19_kDa PF05481.7 gi|55377210|ref|YP_135060.1| - 0.11 12.2 2.1 0.18 11.6 1.5 1.3 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen Lactamase_B_3 PF13483.1 gi|55377211|ref|YP_135061.1| - 8.7e-22 77.5 0.3 1.4e-21 76.9 0.2 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|55377211|ref|YP_135061.1| - 3.7e-15 55.9 0.4 4.8e-15 55.6 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|55377211|ref|YP_135061.1| - 1.4e-05 24.8 13.1 4.6e-05 23.1 9.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HATPase_c PF02518.21 gi|55377212|ref|YP_135062.1| - 6.3e-14 51.6 0.0 1.4e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55377212|ref|YP_135062.1| - 6.9e-09 35.7 0.1 4.2e-08 33.1 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|55377212|ref|YP_135062.1| - 1.3e-06 28.2 0.0 1.6e-05 24.6 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|55377212|ref|YP_135062.1| - 0.0035 17.3 0.6 0.016 15.1 0.2 2.4 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|55377212|ref|YP_135062.1| - 0.027 14.4 0.1 0.062 13.3 0.0 1.6 2 0 0 2 2 2 0 Response regulator receiver domain ILVD_EDD PF00920.16 gi|55377213|ref|YP_135063.1| - 8e-203 674.5 3.5 9.1e-203 674.3 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family GHMP_kinases_N PF00288.21 gi|55377214|ref|YP_135064.1| - 2e-06 27.7 0.1 4.2e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|55377214|ref|YP_135064.1| - 0.037 14.2 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 GHMP kinases C terminal Oxidored_FMN PF00724.15 gi|55377215|ref|YP_135065.1| - 1.4e-70 237.9 0.0 1.6e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|55377215|ref|YP_135065.1| - 0.0019 17.0 0.0 0.0032 16.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF368 PF04018.8 gi|55377216|ref|YP_135066.1| - 6.7e-64 215.5 14.6 6.7e-64 215.5 10.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) GARS_C PF02843.11 gi|55377218|ref|YP_135068.1| - 4.6e-11 42.7 0.2 1.1e-10 41.5 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain GARS_A PF01071.14 gi|55377218|ref|YP_135068.1| - 6.5e-10 38.8 0.0 1.3e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|55377218|ref|YP_135068.1| - 1.2e-06 28.3 0.0 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Glyco_transf_28 PF03033.15 gi|55377218|ref|YP_135068.1| - 0.057 13.1 0.0 1 9.1 0.0 2.5 3 0 0 3 3 3 0 Glycosyltransferase family 28 N-terminal domain HTH_24 PF13412.1 gi|55377220|ref|YP_135070.1| - 2.1e-13 49.4 0.3 2.4e-09 36.4 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55377220|ref|YP_135070.1| - 1.5e-09 37.2 2.5 2.2e-06 27.0 0.2 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|55377220|ref|YP_135070.1| - 2.9e-06 26.8 0.4 1.5e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|55377220|ref|YP_135070.1| - 1.1e-05 25.0 0.2 0.00013 21.5 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_Tc3_2 PF01498.13 gi|55377220|ref|YP_135070.1| - 6.1e-05 22.9 0.0 0.27 11.3 0.0 2.5 2 0 0 2 2 2 2 Transposase HTH_3 PF01381.17 gi|55377220|ref|YP_135070.1| - 0.0016 18.2 0.0 0.0049 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix SlyX PF04102.7 gi|55377220|ref|YP_135070.1| - 0.002 18.4 0.0 0.0065 16.8 0.0 1.9 1 0 0 1 1 1 1 SlyX HTH_31 PF13560.1 gi|55377220|ref|YP_135070.1| - 0.0022 18.1 0.3 0.0065 16.6 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55377220|ref|YP_135070.1| - 0.0047 16.5 0.3 0.046 13.3 0.0 2.5 3 0 0 3 3 3 1 HTH domain HTH_38 PF13936.1 gi|55377220|ref|YP_135070.1| - 0.0056 16.2 0.1 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55377220|ref|YP_135070.1| - 0.0057 16.2 1.3 0.21 11.1 0.1 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Phage_CI_repr PF07022.8 gi|55377220|ref|YP_135070.1| - 0.0069 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain LacI PF00356.16 gi|55377220|ref|YP_135070.1| - 0.0081 15.7 0.6 0.55 9.8 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.14 gi|55377220|ref|YP_135070.1| - 0.0085 16.0 0.0 0.025 14.5 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|55377220|ref|YP_135070.1| - 0.021 14.1 0.1 0.068 12.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|55377220|ref|YP_135070.1| - 0.063 12.8 0.0 0.26 10.9 0.0 2.0 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|55377220|ref|YP_135070.1| - 0.081 12.6 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_DeoR PF08220.7 gi|55377220|ref|YP_135070.1| - 0.1 12.1 0.0 5 6.7 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain AAA_16 PF13191.1 gi|55377220|ref|YP_135070.1| - 0.1 12.5 1.0 0.35 10.8 0.2 2.0 2 0 0 2 2 2 0 AAA ATPase domain DASH_Dad2 PF08654.5 gi|55377220|ref|YP_135070.1| - 0.1 12.5 0.3 0.4 10.7 0.0 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad2 Syntaxin-6_N PF09177.6 gi|55377220|ref|YP_135070.1| - 0.12 12.8 0.6 0.58 10.5 0.0 2.3 3 0 0 3 3 2 0 Syntaxin 6, N-terminal Pex19 PF04614.7 gi|55377220|ref|YP_135070.1| - 0.13 11.8 5.5 0.99 8.9 0.2 2.1 2 0 0 2 2 2 0 Pex19 protein family SPX PF03105.14 gi|55377220|ref|YP_135070.1| - 0.28 10.9 5.1 0.62 9.8 3.6 1.3 1 1 0 1 1 1 0 SPX domain ATG16 PF08614.6 gi|55377220|ref|YP_135070.1| - 0.65 9.7 3.4 4.1 7.1 2.3 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF572 PF04502.8 gi|55377220|ref|YP_135070.1| - 1.1 8.3 7.3 1.5 7.9 5.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF572) Pex14_N PF04695.8 gi|55377220|ref|YP_135070.1| - 7.7 6.5 9.2 1.3 9.0 0.8 2.3 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TFIIS_C PF01096.13 gi|55377221|ref|YP_135071.1| - 1e-17 63.4 3.4 1e-17 63.4 2.4 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|55377221|ref|YP_135071.1| - 4.9e-07 29.4 10.5 2.4e-05 24.0 0.7 2.5 2 1 1 3 3 3 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|55377221|ref|YP_135071.1| - 9.9e-07 28.3 1.2 9.9e-07 28.3 0.8 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|55377221|ref|YP_135071.1| - 2e-05 23.9 12.8 0.27 10.7 1.2 3.5 3 1 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|55377221|ref|YP_135071.1| - 0.00031 20.3 12.8 0.022 14.3 1.2 2.7 2 1 1 3 3 3 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|55377221|ref|YP_135071.1| - 0.00052 19.1 13.3 0.018 14.2 1.2 3.8 3 1 1 4 4 4 3 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55377221|ref|YP_135071.1| - 0.00069 19.3 9.8 0.0013 18.4 1.0 3.1 2 1 1 3 3 3 1 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|55377221|ref|YP_135071.1| - 0.0025 17.5 10.0 0.027 14.2 1.6 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|55377221|ref|YP_135071.1| - 0.0033 17.3 13.1 1.2 9.1 2.0 3.7 3 1 0 3 3 3 1 Zinc ribbon domain DUF2318 PF10080.4 gi|55377221|ref|YP_135071.1| - 0.02 14.6 8.4 0.034 13.9 0.9 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2318) HypA PF01155.14 gi|55377221|ref|YP_135071.1| - 0.029 14.0 9.5 0.46 10.1 1.1 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|55377221|ref|YP_135071.1| - 0.029 13.8 4.9 14 5.2 0.0 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Cytochrome_C554 PF13435.1 gi|55377221|ref|YP_135071.1| - 0.053 13.5 4.2 0.055 13.5 2.3 1.5 1 1 0 1 1 1 0 Cytochrome c554 and c-prime zinc_ribbon_5 PF13719.1 gi|55377221|ref|YP_135071.1| - 0.063 12.8 9.5 1.1 8.9 0.3 3.7 4 0 0 4 4 4 0 zinc-ribbon domain GATA PF00320.22 gi|55377221|ref|YP_135071.1| - 0.081 12.2 7.7 1.3 8.4 0.2 3.6 3 1 0 3 3 3 0 GATA zinc finger GFA PF04828.9 gi|55377221|ref|YP_135071.1| - 0.086 12.8 11.2 4.4 7.3 0.0 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|55377221|ref|YP_135071.1| - 0.094 12.5 0.7 0.094 12.5 0.5 2.8 2 1 0 2 2 2 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|55377221|ref|YP_135071.1| - 0.097 12.1 14.8 1.6 8.3 0.2 4.0 3 1 1 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|55377221|ref|YP_135071.1| - 0.13 11.9 13.2 19 5.0 0.4 4.1 3 1 1 4 4 4 0 Nudix N-terminal zf-IS66 PF13005.2 gi|55377221|ref|YP_135071.1| - 0.13 12.2 12.2 1 9.4 1.0 3.9 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|55377221|ref|YP_135071.1| - 0.17 11.2 14.4 6.4 6.1 0.1 4.3 3 2 1 4 4 4 0 TFIIB zinc-binding PHD_2 PF13831.1 gi|55377221|ref|YP_135071.1| - 0.18 11.1 7.5 27 4.1 0.1 4.0 4 0 0 4 4 4 0 PHD-finger RE_MamI PF09567.5 gi|55377221|ref|YP_135071.1| - 0.18 10.8 0.6 0.19 10.7 0.4 1.2 1 0 0 1 1 1 0 MamI restriction endonuclease IBR PF01485.16 gi|55377221|ref|YP_135071.1| - 0.22 11.3 12.1 6.2e+02 0.3 8.4 3.4 1 1 0 1 1 1 0 IBR domain UPF0547 PF10571.4 gi|55377221|ref|YP_135071.1| - 0.24 11.1 15.0 0.87 9.3 0.4 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|55377221|ref|YP_135071.1| - 0.24 11.1 11.5 1.2 8.8 0.5 3.6 4 0 0 4 4 3 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|55377221|ref|YP_135071.1| - 0.36 10.6 2.9 0.82 9.4 0.1 2.6 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type Ribosomal_L44 PF00935.14 gi|55377221|ref|YP_135071.1| - 0.48 10.4 3.6 37 4.4 0.0 3.5 4 0 0 4 4 4 0 Ribosomal protein L44 zf-C3HC4_3 PF13920.1 gi|55377221|ref|YP_135071.1| - 0.82 9.3 7.1 5.4 6.7 1.0 3.3 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-trcl PF13451.1 gi|55377221|ref|YP_135071.1| - 0.86 9.2 11.8 7.7 6.2 0.1 4.1 4 0 0 4 4 4 0 Probable zinc-binding domain A2L_zn_ribbon PF08792.5 gi|55377221|ref|YP_135071.1| - 1.2 8.6 17.5 2.9 7.4 3.2 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain YhfH PF14149.1 gi|55377221|ref|YP_135071.1| - 1.3 8.8 14.0 13 5.6 0.0 4.1 3 1 1 4 4 4 0 YhfH-like protein ADK_lid PF05191.9 gi|55377221|ref|YP_135071.1| - 1.4 8.6 13.2 15 5.3 0.1 4.0 3 1 0 3 3 3 0 Adenylate kinase, active site lid Cytochrom_CIII PF02085.11 gi|55377221|ref|YP_135071.1| - 1.8 8.6 7.8 23 5.1 1.2 2.9 1 1 2 3 3 3 0 Class III cytochrome C family PhnA_Zn_Ribbon PF08274.7 gi|55377221|ref|YP_135071.1| - 1.9 8.3 15.3 21 5.0 0.1 4.1 3 1 0 3 3 3 0 PhnA Zinc-Ribbon RRN7 PF11781.3 gi|55377221|ref|YP_135071.1| - 2.8 7.5 15.3 5 6.7 0.3 4.1 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 C1_1 PF00130.17 gi|55377221|ref|YP_135071.1| - 3.4 7.4 11.6 0.5 10.1 0.9 3.0 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.6 gi|55377221|ref|YP_135071.1| - 3.5 7.0 8.8 16 4.9 0.1 3.7 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-HYPF PF07503.7 gi|55377221|ref|YP_135071.1| - 3.6 7.0 7.9 31 4.0 0.0 3.9 4 0 0 4 4 4 0 HypF finger Terminase_GpA PF05876.7 gi|55377221|ref|YP_135071.1| - 3.7 5.7 7.9 2.2 6.5 2.3 2.0 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.1 gi|55377221|ref|YP_135071.1| - 3.9 7.8 16.5 7.4 6.9 2.1 3.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_ribbon_2 PF12674.2 gi|55377221|ref|YP_135071.1| - 4.5 7.6 7.0 3 8.2 0.0 3.1 4 0 0 4 4 3 0 Putative zinc ribbon domain zf-NADH-PPase PF09297.6 gi|55377221|ref|YP_135071.1| - 5.8 6.5 18.0 2 7.9 3.7 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|55377221|ref|YP_135071.1| - 5.9 7.0 10.6 6.5 6.8 0.6 2.5 2 1 0 2 2 2 0 DnaJ central domain Ogr_Delta PF04606.7 gi|55377221|ref|YP_135071.1| - 8.1 6.1 12.4 39 3.9 0.0 3.9 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger Filament PF00038.16 gi|55377223|ref|YP_135073.1| - 1.7e-05 24.4 2.7 2.6e-05 23.8 1.8 1.2 1 0 0 1 1 1 1 Intermediate filament protein RHH_1 PF01402.16 gi|55377223|ref|YP_135073.1| - 1.9e-05 24.3 0.3 0.00021 21.0 0.0 2.9 3 0 0 3 3 2 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.7 gi|55377223|ref|YP_135073.1| - 5.2e-05 23.0 2.5 0.027 14.3 0.1 2.7 2 1 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus CHASE3 PF05227.8 gi|55377223|ref|YP_135073.1| - 0.00036 20.2 9.5 0.00046 19.8 2.2 2.8 2 1 0 2 2 2 1 CHASE3 domain HSBP1 PF06825.7 gi|55377223|ref|YP_135073.1| - 0.0021 17.5 0.0 0.11 12.0 0.0 2.9 2 1 0 2 2 2 1 Heat shock factor binding protein 1 IncA PF04156.9 gi|55377223|ref|YP_135073.1| - 0.0042 16.6 1.1 0.0068 16.0 0.7 1.4 1 0 0 1 1 1 1 IncA protein Reo_sigmaC PF04582.7 gi|55377223|ref|YP_135073.1| - 0.0048 16.1 2.2 0.0067 15.6 1.6 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|55377223|ref|YP_135073.1| - 0.012 15.8 7.8 0.015 15.5 0.6 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|55377223|ref|YP_135073.1| - 0.025 14.5 1.1 1.1 9.3 0.7 2.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain PilJ PF13675.1 gi|55377223|ref|YP_135073.1| - 0.025 14.8 5.0 0.22 11.8 1.0 2.4 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term AAA_13 PF13166.1 gi|55377223|ref|YP_135073.1| - 0.034 12.6 1.3 0.043 12.2 0.9 1.2 1 0 0 1 1 1 0 AAA domain Sipho_Gp157 PF05565.6 gi|55377223|ref|YP_135073.1| - 0.044 13.3 5.8 0.67 9.5 0.3 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 zinc_ribbon_5 PF13719.1 gi|55377223|ref|YP_135073.1| - 0.06 12.9 2.4 3.1 7.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|55377223|ref|YP_135073.1| - 0.068 12.8 2.4 3.5 7.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF4446 PF14584.1 gi|55377223|ref|YP_135073.1| - 0.096 12.5 0.3 0.25 11.1 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Mnd1 PF03962.10 gi|55377223|ref|YP_135073.1| - 0.097 12.3 3.1 0.098 12.3 1.4 1.6 1 1 0 1 1 1 0 Mnd1 family Fib_alpha PF08702.5 gi|55377223|ref|YP_135073.1| - 0.13 12.4 1.7 8.2 6.5 0.1 2.8 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family TBPIP PF07106.8 gi|55377223|ref|YP_135073.1| - 0.13 11.7 0.5 0.54 9.7 0.3 2.0 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Herpes_UL25 PF01499.11 gi|55377223|ref|YP_135073.1| - 0.16 10.2 7.7 0.034 12.4 1.3 1.9 1 1 1 2 2 2 0 Herpesvirus UL25 family Apolipoprotein PF01442.13 gi|55377223|ref|YP_135073.1| - 0.18 11.3 8.0 0.14 11.6 0.9 2.1 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain DUF1515 PF07439.6 gi|55377223|ref|YP_135073.1| - 0.18 11.6 8.8 0.54 10.0 1.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1515) Tropomyosin_1 PF12718.2 gi|55377223|ref|YP_135073.1| - 0.19 11.5 5.2 0.42 10.4 2.8 2.1 1 1 1 2 2 2 0 Tropomyosin like zf-ribbon_3 PF13248.1 gi|55377223|ref|YP_135073.1| - 0.21 10.8 1.8 0.5 9.6 1.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain She9_MDM33 PF05546.6 gi|55377223|ref|YP_135073.1| - 0.27 10.7 2.6 0.43 10.1 1.8 1.3 1 0 0 1 1 1 0 She9 / Mdm33 family BLOC1_2 PF10046.4 gi|55377223|ref|YP_135073.1| - 0.3 11.2 2.5 6.2 7.0 1.6 2.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Val_tRNA-synt_C PF10458.4 gi|55377223|ref|YP_135073.1| - 0.32 11.1 2.2 3.3 7.8 0.0 3.0 3 0 0 3 3 3 0 Valyl tRNA synthetase tRNA binding arm DZR PF12773.2 gi|55377223|ref|YP_135073.1| - 0.33 10.8 2.3 0.77 9.6 1.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon Atg14 PF10186.4 gi|55377223|ref|YP_135073.1| - 0.36 9.7 2.2 0.52 9.2 0.4 2.0 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 XhlA PF10779.4 gi|55377223|ref|YP_135073.1| - 0.77 9.7 2.8 4.9 7.1 0.2 2.6 2 0 0 2 2 2 0 Haemolysin XhlA DUF2959 PF11172.3 gi|55377223|ref|YP_135073.1| - 0.79 9.4 5.8 0.53 10.0 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Phage_GP20 PF06810.6 gi|55377223|ref|YP_135073.1| - 0.99 8.8 4.9 3.5 7.0 0.3 2.6 1 1 2 3 3 3 0 Phage minor structural protein GP20 DUF1664 PF07889.7 gi|55377223|ref|YP_135073.1| - 1.3 8.8 5.1 3.9 7.2 0.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) FYVE_2 PF02318.11 gi|55377223|ref|YP_135073.1| - 2.1 8.2 4.3 2.4 8.0 0.6 2.4 1 1 1 2 2 2 0 FYVE-type zinc finger DUF848 PF05852.6 gi|55377223|ref|YP_135073.1| - 4.1 7.2 7.7 2.2 8.1 1.1 2.5 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) HSCB_C PF07743.8 gi|55377223|ref|YP_135073.1| - 7.7 7.0 9.4 18 5.8 2.5 3.3 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain KaiC PF06745.8 gi|55377224|ref|YP_135074.1| - 7e-10 38.4 0.1 7.2e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|55377224|ref|YP_135074.1| - 1.2e-06 28.0 0.5 0.0033 16.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|55377224|ref|YP_135074.1| - 0.078 11.8 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 Rad51 DUF422 PF04240.7 gi|55377225|ref|YP_135075.1| - 1e-79 266.9 18.4 1.4e-79 266.5 12.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF422) TMEM238 PF15125.1 gi|55377225|ref|YP_135075.1| - 0.26 11.2 0.2 0.26 11.2 0.1 3.3 2 1 0 2 2 2 0 TMEM238 protein family DUF3267 PF11667.3 gi|55377225|ref|YP_135075.1| - 6 7.1 6.8 14 5.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3267) UbiA PF01040.13 gi|55377226|ref|YP_135076.1| - 5.1e-28 97.9 19.6 7.5e-28 97.4 13.6 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.19 gi|55377227|ref|YP_135077.1| - 8.2e-21 74.5 0.4 8.7e-20 71.2 0.3 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|55377227|ref|YP_135077.1| - 2.3e-17 62.9 0.0 8.5e-08 31.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55377227|ref|YP_135077.1| - 1.6e-16 60.0 0.1 3.8e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55377227|ref|YP_135077.1| - 3.7e-07 28.9 0.0 0.00097 17.7 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|55377227|ref|YP_135077.1| - 2.7e-06 26.7 0.0 3.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|55377227|ref|YP_135077.1| - 6.3e-06 26.3 0.1 0.0026 17.8 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|55377227|ref|YP_135077.1| - 7.6e-06 25.0 0.7 1.5e-05 24.0 0.5 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|55377227|ref|YP_135077.1| - 2.5e-05 24.6 1.3 0.0016 18.7 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55377227|ref|YP_135077.1| - 3.2e-05 23.1 0.2 5.5e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|55377227|ref|YP_135077.1| - 0.0001 22.2 0.0 0.00029 20.7 0.0 1.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377227|ref|YP_135077.1| - 0.00079 18.3 0.3 0.0016 17.3 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|55377227|ref|YP_135077.1| - 0.031 13.3 0.2 0.053 12.5 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Strep_67kDa_ant PF06100.6 gi|55377227|ref|YP_135077.1| - 0.1 10.9 0.0 0.15 10.3 0.0 1.3 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_9 PF13454.1 gi|55377227|ref|YP_135077.1| - 0.19 11.4 3.1 10 5.8 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|55377227|ref|YP_135077.1| - 0.21 10.2 0.1 0.35 9.4 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Peptidase_M24 PF00557.19 gi|55377228|ref|YP_135078.1| - 9e-40 136.4 1.1 1.2e-39 136.1 0.7 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|55377228|ref|YP_135078.1| - 2.4e-07 31.3 1.3 5e-07 30.2 0.1 2.1 2 1 1 3 3 3 1 Creatinase/Prolidase N-terminal domain AMP_N PF05195.11 gi|55377228|ref|YP_135078.1| - 0.057 12.8 1.3 0.19 11.0 0.0 2.4 3 0 0 3 3 3 0 Aminopeptidase P, N-terminal domain RHH_1 PF01402.16 gi|55377229|ref|YP_135079.1| - 7.1e-05 22.5 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribosomal_L15e PF00827.12 gi|55377229|ref|YP_135079.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L15 Glyoxalase_2 PF12681.2 gi|55377232|ref|YP_135082.1| - 1.6e-17 64.0 1.7 2.7e-09 37.5 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|55377232|ref|YP_135082.1| - 1.2e-11 44.7 0.0 1.4e-07 31.5 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|55377232|ref|YP_135082.1| - 0.11 12.4 0.3 0.44 10.5 0.1 1.9 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PhnA_Zn_Ribbon PF08274.7 gi|55377233|ref|YP_135083.1| - 0.0012 18.6 2.7 0.51 10.1 0.0 2.4 2 1 0 2 2 2 2 PhnA Zinc-Ribbon DZR PF12773.2 gi|55377233|ref|YP_135083.1| - 0.0021 17.8 2.3 0.0041 16.9 1.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|55377233|ref|YP_135083.1| - 0.0041 16.8 1.3 0.0081 15.9 0.9 1.5 1 1 0 1 1 1 1 zinc-ribbons Terminase_GpA PF05876.7 gi|55377233|ref|YP_135083.1| - 0.0089 14.4 1.5 0.0096 14.3 1.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-DNA_Pol PF08996.5 gi|55377233|ref|YP_135083.1| - 0.0094 15.3 0.2 0.011 15.0 0.1 1.1 1 0 0 1 1 1 1 DNA Polymerase alpha zinc finger Zn-ribbon_8 PF09723.5 gi|55377233|ref|YP_135083.1| - 0.011 15.7 3.6 0.76 9.7 0.1 2.5 3 0 0 3 3 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|55377233|ref|YP_135083.1| - 0.012 14.8 3.7 0.72 9.2 0.0 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|55377233|ref|YP_135083.1| - 0.018 14.7 5.6 0.22 11.2 0.1 2.5 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|55377233|ref|YP_135083.1| - 0.023 13.8 3.7 0.3 10.3 0.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|55377233|ref|YP_135083.1| - 0.035 13.9 5.7 0.65 9.8 4.0 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.15 gi|55377233|ref|YP_135083.1| - 0.036 13.9 0.6 4.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin DUF1272 PF06906.6 gi|55377233|ref|YP_135083.1| - 0.036 13.8 2.2 0.33 10.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) GFA PF04828.9 gi|55377233|ref|YP_135083.1| - 0.043 13.7 3.8 0.9 9.5 0.3 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-CHY PF05495.7 gi|55377233|ref|YP_135083.1| - 0.056 13.6 3.5 0.38 10.9 2.3 1.9 1 1 1 2 2 2 0 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|55377233|ref|YP_135083.1| - 0.058 12.8 4.3 0.77 9.3 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF329 PF03884.9 gi|55377233|ref|YP_135083.1| - 0.068 12.7 0.7 8.1 6.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-LITAF-like PF10601.4 gi|55377233|ref|YP_135083.1| - 0.088 12.6 3.9 0.54 10.1 0.7 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|55377233|ref|YP_135083.1| - 0.11 11.9 1.9 1.3 8.5 0.0 2.5 2 1 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|55377233|ref|YP_135083.1| - 0.14 12.4 3.2 2 8.7 2.3 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|55377233|ref|YP_135083.1| - 0.14 11.6 3.0 4.4 6.8 0.0 2.5 3 0 0 3 3 2 0 DNA directed RNA polymerase, 7 kDa subunit NOB1_Zn_bind PF08772.6 gi|55377233|ref|YP_135083.1| - 0.18 11.6 1.4 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|55377233|ref|YP_135083.1| - 0.25 11.0 1.8 1.2 8.8 1.3 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|55377233|ref|YP_135083.1| - 0.26 10.9 2.0 7.8 6.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|55377233|ref|YP_135083.1| - 0.28 10.9 2.0 9.4 6.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|55377233|ref|YP_135083.1| - 0.28 11.2 7.2 0.45 10.5 0.1 2.7 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|55377233|ref|YP_135083.1| - 0.42 10.3 4.6 1 9.1 3.2 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|55377233|ref|YP_135083.1| - 0.46 10.2 3.2 3.5 7.4 2.2 2.0 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-HIT PF04438.11 gi|55377233|ref|YP_135083.1| - 0.49 10.0 3.5 2.1 8.0 0.6 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2 PF00096.21 gi|55377233|ref|YP_135083.1| - 0.55 10.6 4.5 4 7.9 0.3 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C3HC4_3 PF13920.1 gi|55377233|ref|YP_135083.1| - 0.67 9.6 3.8 2 8.1 2.7 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|55377233|ref|YP_135083.1| - 0.73 9.6 8.5 2.9 7.7 5.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|55377233|ref|YP_135083.1| - 0.79 9.4 7.3 4.1 7.1 0.1 2.6 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2_4 PF13894.1 gi|55377233|ref|YP_135083.1| - 0.8 10.1 5.9 8.7 6.9 1.8 2.9 2 1 0 2 2 2 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|55377233|ref|YP_135083.1| - 0.87 9.2 3.8 3.3 7.4 2.5 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|55377233|ref|YP_135083.1| - 0.88 9.9 5.1 4.6 7.6 3.5 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS91 PF14319.1 gi|55377233|ref|YP_135083.1| - 1.7 8.2 5.1 8.3 5.9 0.8 2.0 1 1 1 2 2 2 0 Transposase zinc-binding domain DUF1610 PF07754.6 gi|55377233|ref|YP_135083.1| - 3 8.0 7.9 2 8.6 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HMGL-like PF00682.14 gi|55377235|ref|YP_135085.1| - 1.5e-58 198.2 3.8 2.5e-58 197.5 2.6 1.3 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_N PF02776.13 gi|55377236|ref|YP_135086.1| - 1.7e-52 177.3 0.4 3.8e-52 176.2 0.3 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|55377236|ref|YP_135086.1| - 1.6e-51 173.8 0.3 4.6e-51 172.3 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|55377236|ref|YP_135086.1| - 5e-44 149.3 0.0 1.1e-43 148.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|55377236|ref|YP_135086.1| - 0.0047 16.4 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit XFP_N PF09364.5 gi|55377236|ref|YP_135086.1| - 0.089 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain ALS_ss_C PF10369.4 gi|55377237|ref|YP_135087.1| - 2e-23 81.8 0.2 3.6e-23 81.0 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|55377237|ref|YP_135087.1| - 8.7e-14 51.0 0.0 1.8e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|55377237|ref|YP_135087.1| - 4.5e-13 48.3 0.3 1.7e-12 46.5 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|55377237|ref|YP_135087.1| - 0.0052 17.1 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain NIL PF09383.5 gi|55377237|ref|YP_135087.1| - 0.0074 15.8 0.1 0.61 9.6 0.0 2.6 2 1 0 2 2 2 1 NIL domain Acylphosphatase PF00708.13 gi|55377237|ref|YP_135087.1| - 0.021 14.8 0.3 9.5 6.3 0.0 2.7 3 0 0 3 3 3 0 Acylphosphatase TPR_21 PF09976.4 gi|55377237|ref|YP_135087.1| - 0.092 12.6 0.2 0.14 12.1 0.2 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat WIYLD PF10440.4 gi|55377237|ref|YP_135087.1| - 0.14 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain KH_1 PF00013.24 gi|55377237|ref|YP_135087.1| - 0.24 11.0 1.5 3.6 7.3 0.2 2.8 2 1 1 3 3 3 0 KH domain IlvN PF07991.7 gi|55377238|ref|YP_135088.1| - 2e-70 235.4 0.1 2.7e-70 235.0 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|55377238|ref|YP_135088.1| - 1.5e-53 180.6 0.4 2e-53 180.1 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|55377238|ref|YP_135088.1| - 7.7e-07 29.4 0.0 1.6e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|55377238|ref|YP_135088.1| - 1.9e-05 23.8 0.0 3.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55377238|ref|YP_135088.1| - 0.00062 19.2 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|55377238|ref|YP_135088.1| - 0.00098 19.0 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|55377238|ref|YP_135088.1| - 0.13 11.9 0.2 1.2 8.8 0.1 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|55377238|ref|YP_135088.1| - 0.21 11.7 0.9 30 4.8 0.0 2.9 3 0 0 3 3 3 0 CoA binding domain Aconitase PF00330.15 gi|55377240|ref|YP_135090.1| - 1.3e-150 501.9 0.0 1.5e-150 501.7 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|55377240|ref|YP_135090.1| - 0.013 14.0 0.0 0.021 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|55377241|ref|YP_135091.1| - 5.8e-20 71.7 0.0 9.3e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain GDPD_2 PF13653.1 gi|55377241|ref|YP_135091.1| - 0.053 13.7 0.1 3.3 8.0 0.0 2.7 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Cas_Cas02710 PF09670.5 gi|55377242|ref|YP_135092.1| - 7e-06 24.9 0.0 8.6e-06 24.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) adh_short PF00106.20 gi|55377242|ref|YP_135092.1| - 0.0059 16.5 0.4 0.012 15.4 0.3 1.6 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55377242|ref|YP_135092.1| - 0.0064 16.1 0.1 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 KR domain Cas_APE2256 PF09651.5 gi|55377242|ref|YP_135092.1| - 0.018 14.7 0.0 0.052 13.2 0.0 1.8 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) HTH_27 PF13463.1 gi|55377242|ref|YP_135092.1| - 0.026 14.8 0.0 0.093 13.0 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain ThiC PF01964.13 gi|55377242|ref|YP_135092.1| - 0.077 11.4 0.1 0.11 10.9 0.1 1.2 1 0 0 1 1 1 0 ThiC family DUF4364 PF14277.1 gi|55377242|ref|YP_135092.1| - 0.095 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Response_reg PF00072.19 gi|55377243|ref|YP_135093.1| - 1.9e-20 72.9 0.1 3.5e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|55377243|ref|YP_135093.1| - 1.4e-07 31.8 0.0 8.4e-07 29.3 0.0 2.0 1 1 1 2 2 2 1 PAS domain PAS PF00989.19 gi|55377243|ref|YP_135093.1| - 2.2e-07 30.6 0.0 5.6e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.10 gi|55377243|ref|YP_135093.1| - 2.9e-06 27.2 0.0 5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_4 PF08448.5 gi|55377243|ref|YP_135093.1| - 4.6e-06 26.6 0.8 1.4e-05 25.0 0.0 2.1 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|55377243|ref|YP_135093.1| - 5.3e-05 23.2 0.0 0.00022 21.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|55377243|ref|YP_135093.1| - 0.00012 21.7 0.0 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain Iso_dh PF00180.15 gi|55377244|ref|YP_135094.1| - 1.2e-93 313.8 0.1 1.3e-93 313.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.17 gi|55377245|ref|YP_135095.1| - 2.3e-53 180.1 0.1 3e-53 179.7 0.1 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|55377245|ref|YP_135095.1| - 1.9e-16 59.3 0.1 3.3e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|55377245|ref|YP_135095.1| - 1.6e-08 34.0 0.2 2.8e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|55377245|ref|YP_135095.1| - 1.2e-06 28.0 0.6 3.8e-06 26.4 0.1 2.0 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.15 gi|55377245|ref|YP_135095.1| - 1.5e-06 27.7 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|55377245|ref|YP_135095.1| - 1.2e-05 24.6 0.0 3.7e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|55377245|ref|YP_135095.1| - 2.7e-05 23.8 0.9 9.1e-05 22.1 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|55377245|ref|YP_135095.1| - 4.2e-05 23.1 0.1 7.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family RPA_C PF08784.6 gi|55377245|ref|YP_135095.1| - 0.00071 19.9 0.0 0.0024 18.2 0.0 1.8 2 0 0 2 2 2 1 Replication protein A C terminal HTH_23 PF13384.1 gi|55377245|ref|YP_135095.1| - 0.00077 19.0 0.5 0.002 17.7 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.14 gi|55377245|ref|YP_135095.1| - 0.00089 18.9 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|55377245|ref|YP_135095.1| - 0.00095 18.7 0.1 0.0022 17.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF742 PF05331.6 gi|55377245|ref|YP_135095.1| - 0.002 17.7 0.0 0.0065 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF742) HTH_24 PF13412.1 gi|55377245|ref|YP_135095.1| - 0.0038 16.5 0.1 0.0066 15.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|55377245|ref|YP_135095.1| - 0.0039 16.7 0.1 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.7 gi|55377245|ref|YP_135095.1| - 0.005 16.9 0.1 0.078 13.1 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein HTH_28 PF13518.1 gi|55377245|ref|YP_135095.1| - 0.0053 16.7 0.1 0.012 15.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|55377245|ref|YP_135095.1| - 0.02 14.5 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Sigma70_r4 PF04545.11 gi|55377245|ref|YP_135095.1| - 0.028 13.7 0.2 0.066 12.5 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|55377245|ref|YP_135095.1| - 0.031 14.2 0.0 0.097 12.6 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_ECF PF07638.6 gi|55377245|ref|YP_135095.1| - 0.042 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_Mga PF08280.6 gi|55377245|ref|YP_135095.1| - 0.051 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_1 PF01527.15 gi|55377245|ref|YP_135095.1| - 0.059 13.3 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 Transposase HTH_29 PF13551.1 gi|55377245|ref|YP_135095.1| - 0.07 13.2 0.4 0.19 11.8 0.3 2.0 1 1 0 1 1 1 0 Winged helix-turn helix DDRGK PF09756.4 gi|55377245|ref|YP_135095.1| - 0.083 12.2 0.0 0.083 12.2 0.0 1.4 2 0 0 2 2 1 0 DDRGK domain Rrf2 PF02082.15 gi|55377245|ref|YP_135095.1| - 0.092 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.8 gi|55377245|ref|YP_135095.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain EAP30 PF04157.11 gi|55377245|ref|YP_135095.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Tnp_Tc3_2 PF01498.13 gi|55377245|ref|YP_135095.1| - 0.15 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Transposase PfkB PF00294.19 gi|55377246|ref|YP_135096.1| - 5.4e-38 130.8 3.4 7e-38 130.4 2.4 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|55377246|ref|YP_135096.1| - 0.057 12.6 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF3154 PF11351.3 gi|55377246|ref|YP_135096.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) PfkB PF00294.19 gi|55377247|ref|YP_135097.1| - 0.05 12.7 2.8 0.078 12.0 1.9 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DeoC PF01791.4 gi|55377248|ref|YP_135098.1| - 2.7e-31 108.6 0.0 3e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|55377248|ref|YP_135098.1| - 0.0082 15.4 0.1 0.018 14.3 0.0 1.7 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel RHH_1 PF01402.16 gi|55377249|ref|YP_135099.1| - 0.049 13.5 0.3 0.35 10.8 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF937 PF06078.6 gi|55377250|ref|YP_135100.1| - 0.0051 17.0 2.7 0.0059 16.8 1.9 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF937) SPATA25 PF15218.1 gi|55377250|ref|YP_135100.1| - 0.033 13.6 2.1 0.048 13.0 1.5 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 25 FIST PF08495.5 gi|55377251|ref|YP_135101.1| - 1.6e-47 161.1 0.9 1.1e-45 155.2 0.3 2.4 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.4 gi|55377251|ref|YP_135101.1| - 1.6e-42 144.7 0.3 9.5e-41 138.9 0.0 2.3 2 0 0 2 2 2 2 FIST C domain OsmC PF02566.14 gi|55377252|ref|YP_135102.1| - 9.9e-14 51.3 0.0 1.5e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein SbcD_C PF12320.3 gi|55377252|ref|YP_135102.1| - 0.0047 16.9 0.4 0.013 15.5 0.3 1.8 1 1 0 1 1 1 1 Type 5 capsule protein repressor C-terminal domain UbiA PF01040.13 gi|55377254|ref|YP_135104.1| - 9e-17 61.1 19.5 1.2e-16 60.7 13.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DnaJ PF00226.26 gi|55377255|ref|YP_135105.1| - 1.2e-19 69.8 0.0 1.9e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF1684 PF07920.6 gi|55377256|ref|YP_135106.1| - 2.2e-53 179.9 0.0 3.1e-53 179.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Abi PF02517.11 gi|55377257|ref|YP_135107.1| - 2.6e-15 56.3 0.2 2.6e-15 56.3 0.1 2.5 3 0 0 3 3 3 1 CAAX protease self-immunity DUF4149 PF13664.1 gi|55377257|ref|YP_135107.1| - 6.2 6.9 9.4 5.5 7.1 2.3 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) PAS_9 PF13426.1 gi|55377258|ref|YP_135108.1| - 3.3e-32 110.9 0.1 8.2e-16 58.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|55377258|ref|YP_135108.1| - 1.5e-21 76.4 0.0 3.5e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|55377258|ref|YP_135108.1| - 9.7e-20 70.4 0.1 1.1e-09 38.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|55377258|ref|YP_135108.1| - 2.3e-14 53.3 2.0 2e-08 34.2 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|55377258|ref|YP_135108.1| - 6e-08 32.2 0.0 0.011 15.5 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|55377258|ref|YP_135108.1| - 1.1e-06 28.8 0.1 6e-06 26.4 0.0 2.2 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|55377258|ref|YP_135108.1| - 3.6e-06 27.1 0.0 9.8e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|55377258|ref|YP_135108.1| - 5.7e-06 26.3 0.5 0.0069 16.4 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|55377258|ref|YP_135108.1| - 0.00019 21.4 0.1 0.67 9.9 0.0 3.3 2 2 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|55377258|ref|YP_135108.1| - 0.023 14.6 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 PAS domain GAF_2 PF13185.1 gi|55377258|ref|YP_135108.1| - 0.027 14.9 0.1 0.09 13.2 0.0 2.0 2 0 0 2 2 1 0 GAF domain OKR_DC_1_N PF03709.10 gi|55377258|ref|YP_135108.1| - 0.082 12.9 0.0 0.25 11.4 0.0 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DctM PF06808.7 gi|55377259|ref|YP_135109.1| - 7.9e-59 199.2 40.4 1.4e-58 198.4 28.0 1.4 1 0 0 1 1 1 1 DctM-like transporters TAT_signal PF10518.4 gi|55377260|ref|YP_135110.1| - 0.084 12.9 1.0 0.31 11.1 0.7 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DAO PF01266.19 gi|55377261|ref|YP_135111.1| - 3.5e-12 45.9 0.0 3.8e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|55377261|ref|YP_135111.1| - 1.1e-09 37.8 0.3 0.0001 21.4 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|55377261|ref|YP_135111.1| - 4e-09 36.6 0.2 7.3e-08 32.5 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55377261|ref|YP_135111.1| - 1.1e-06 27.3 1.1 0.00092 17.7 1.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.9 gi|55377261|ref|YP_135111.1| - 1.8e-05 23.6 1.4 0.014 14.0 0.0 2.1 1 1 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|55377261|ref|YP_135111.1| - 2.4e-05 24.1 0.7 0.046 13.4 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|55377261|ref|YP_135111.1| - 2.5e-05 23.5 3.0 6.5e-05 22.1 1.9 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|55377261|ref|YP_135111.1| - 3.3e-05 22.9 1.6 0.001 17.9 0.7 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|55377261|ref|YP_135111.1| - 0.00015 20.7 0.8 0.0026 16.7 0.6 2.2 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|55377261|ref|YP_135111.1| - 0.0004 19.3 2.4 0.0004 19.3 1.6 1.7 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|55377261|ref|YP_135111.1| - 0.00062 19.7 0.2 0.00062 19.7 0.2 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|55377261|ref|YP_135111.1| - 0.0068 15.5 0.1 0.011 14.8 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|55377261|ref|YP_135111.1| - 0.018 15.4 0.4 0.26 11.7 0.5 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377261|ref|YP_135111.1| - 0.096 12.7 0.4 9.9 6.1 0.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Response_reg PF00072.19 gi|55377262|ref|YP_135112.1| - 6e-12 45.5 0.6 9e-12 45.0 0.1 1.5 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|55377262|ref|YP_135112.1| - 0.23 11.4 8.3 0.062 13.2 3.5 1.8 2 0 0 2 2 2 0 HalX domain 2-Hacid_dh_C PF02826.14 gi|55377263|ref|YP_135113.1| - 6.1e-50 168.8 0.0 8.9e-50 168.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|55377263|ref|YP_135113.1| - 8.1e-10 38.2 0.0 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Repressor_Mnt PF11423.3 gi|55377263|ref|YP_135113.1| - 0.015 14.5 0.1 0.046 13.0 0.0 1.8 1 0 0 1 1 1 0 Regulatory protein Mnt NAD_binding_2 PF03446.10 gi|55377263|ref|YP_135113.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|55377263|ref|YP_135113.1| - 0.029 14.8 0.0 0.056 13.8 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|55377265|ref|YP_135115.1| - 7.9e-33 113.3 0.0 2.1e-32 111.9 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|55377265|ref|YP_135115.1| - 7.2e-31 107.4 0.0 1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|55377265|ref|YP_135115.1| - 0.00023 21.0 0.0 0.00055 19.8 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|55377265|ref|YP_135115.1| - 0.00081 19.9 0.0 0.0015 19.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|55377265|ref|YP_135115.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AAA_12 PF13087.1 gi|55377267|ref|YP_135117.1| - 2.5e-44 151.0 0.0 4.8e-44 150.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|55377267|ref|YP_135117.1| - 9.5e-33 113.7 0.2 1.9e-16 60.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|55377267|ref|YP_135117.1| - 4.4e-16 58.3 3.4 2.6e-12 46.2 0.0 3.3 3 0 0 3 3 3 2 Part of AAA domain AAA_30 PF13604.1 gi|55377267|ref|YP_135117.1| - 1.1e-13 51.1 0.3 1.1e-13 51.1 0.2 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|55377267|ref|YP_135117.1| - 9.6e-07 28.5 0.2 0.047 13.2 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|55377267|ref|YP_135117.1| - 0.00026 21.0 1.4 0.0007 19.6 0.1 2.4 3 1 0 3 3 2 1 AAA ATPase domain Helicase_RecD PF05127.9 gi|55377267|ref|YP_135117.1| - 0.00095 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 Helicase ResIII PF04851.10 gi|55377267|ref|YP_135117.1| - 0.0014 18.4 0.0 0.0042 16.9 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|55377267|ref|YP_135117.1| - 0.0018 17.7 0.1 0.0073 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55377267|ref|YP_135117.1| - 0.0023 18.0 0.0 0.0072 16.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|55377267|ref|YP_135117.1| - 0.0071 15.3 0.0 0.043 12.7 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|55377267|ref|YP_135117.1| - 0.02 15.0 0.0 0.056 13.5 0.0 1.8 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain PhoH PF02562.11 gi|55377267|ref|YP_135117.1| - 0.04 13.1 0.0 0.43 9.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_17 PF13207.1 gi|55377267|ref|YP_135117.1| - 0.062 14.1 0.0 0.23 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|55377267|ref|YP_135117.1| - 0.071 12.5 0.0 0.18 11.1 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|55377267|ref|YP_135117.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|55377267|ref|YP_135117.1| - 0.12 11.0 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|55377267|ref|YP_135117.1| - 0.17 10.8 0.0 0.67 8.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase IPT PF01745.11 gi|55377267|ref|YP_135117.1| - 0.19 10.8 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase ABC_tran PF00005.22 gi|55377267|ref|YP_135117.1| - 0.23 11.7 0.0 26 5.0 0.0 3.2 2 1 0 2 2 2 0 ABC transporter DDE_Tnp_IS240 PF13610.1 gi|55377268|ref|YP_135118.1| - 2.6e-16 59.8 0.1 3.3e-16 59.5 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|55377268|ref|YP_135118.1| - 4.6e-06 26.7 0.2 7.7e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|55377268|ref|YP_135118.1| - 0.0001 21.6 0.2 0.00027 20.2 0.1 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|55377268|ref|YP_135118.1| - 0.0014 18.4 0.0 0.0041 16.8 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|55377268|ref|YP_135118.1| - 0.015 15.2 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Peripla_BP_6 PF13458.1 gi|55377269|ref|YP_135119.1| - 4.8e-57 193.8 8.8 6.4e-57 193.4 6.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55377269|ref|YP_135119.1| - 2.4e-24 85.7 0.2 3.4e-24 85.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|55377269|ref|YP_135119.1| - 7.5e-06 24.9 0.0 1.6e-05 23.8 0.1 1.4 2 0 0 2 2 2 1 Receptor family ligand binding region Lipase_GDSL_2 PF13472.1 gi|55377269|ref|YP_135119.1| - 0.061 13.4 3.3 2.4 8.2 0.2 2.4 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family HAMP PF00672.20 gi|55377270|ref|YP_135120.1| - 3.1e-09 36.8 3.1 6.3e-08 32.6 0.2 3.8 4 1 0 4 4 3 2 HAMP domain IncA PF04156.9 gi|55377270|ref|YP_135120.1| - 0.00023 20.8 16.1 0.014 15.0 4.4 3.3 2 1 1 3 3 3 2 IncA protein MCPsignal PF00015.16 gi|55377270|ref|YP_135120.1| - 0.014 14.9 1.2 0.014 14.9 0.8 3.6 3 1 1 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3366 PF11846.3 gi|55377270|ref|YP_135120.1| - 0.067 13.0 2.8 2.6 7.8 0.1 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF3366) AAA_13 PF13166.1 gi|55377270|ref|YP_135120.1| - 0.55 8.6 12.3 2 6.7 8.2 1.9 1 1 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|55377270|ref|YP_135120.1| - 1.1 9.1 8.5 1.8 8.3 1.7 3.6 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|55377270|ref|YP_135120.1| - 1.9 8.4 11.5 0.79 9.6 0.1 4.1 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) ISG65-75 PF11727.3 gi|55377270|ref|YP_135120.1| - 2 7.3 17.9 0.22 10.5 3.2 2.7 1 1 2 3 3 3 0 Invariant surface glycoprotein CorA PF01544.13 gi|55377270|ref|YP_135120.1| - 2.3 7.1 12.1 0.32 9.9 1.0 2.9 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.7 gi|55377270|ref|YP_135120.1| - 2.8 7.6 15.2 0.13 12.0 1.8 3.8 2 1 2 4 4 4 0 Laminin Domain II Syntaxin PF00804.20 gi|55377270|ref|YP_135120.1| - 3.4 7.8 10.8 1.1 9.4 2.6 3.3 2 1 0 2 2 2 0 Syntaxin Trichoplein PF13868.1 gi|55377271|ref|YP_135121.1| - 0.033 12.6 2.1 0.042 12.2 1.5 1.1 1 0 0 1 1 1 0 Tumour suppressor, Mitostatin TerB-C PF15615.1 gi|55377271|ref|YP_135121.1| - 0.14 12.4 4.9 0.76 10.0 2.3 2.0 2 0 0 2 2 2 0 TerB-C domain HABP4_PAI-RBP1 PF04774.10 gi|55377271|ref|YP_135121.1| - 0.15 12.6 1.4 0.21 12.1 1.0 1.2 1 0 0 1 1 1 0 Hyaluronan / mRNA binding family MerR-DNA-bind PF09278.6 gi|55377271|ref|YP_135121.1| - 0.48 10.8 3.9 3.7 8.0 0.2 2.4 2 0 0 2 2 2 0 MerR, DNA binding FUSC PF04632.7 gi|55377271|ref|YP_135121.1| - 1.6 7.0 5.1 1.7 6.9 3.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Glycophorin_A PF01102.13 gi|55377272|ref|YP_135122.1| - 0.45 10.3 1.9 0.47 10.2 1.3 1.0 1 0 0 1 1 1 0 Glycophorin A Phage_integrase PF00589.17 gi|55377274|ref|YP_135124.1| - 3.5e-19 69.1 0.0 5.4e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|55377274|ref|YP_135124.1| - 4.3e-09 36.3 0.1 2e-08 34.2 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|55377274|ref|YP_135124.1| - 2.5e-05 24.4 0.0 6.3e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_10 PF04967.7 gi|55377275|ref|YP_135125.1| - 8.8e-20 70.0 0.1 1.6e-19 69.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|55377275|ref|YP_135125.1| - 0.0041 16.4 0.1 0.0084 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55377275|ref|YP_135125.1| - 0.0063 16.1 0.1 0.017 14.8 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|55377275|ref|YP_135125.1| - 0.0088 15.5 0.1 0.02 14.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|55377275|ref|YP_135125.1| - 0.012 15.1 0.2 0.028 13.9 0.0 1.7 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_20 PF12840.2 gi|55377275|ref|YP_135125.1| - 0.023 14.4 0.0 0.094 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|55377275|ref|YP_135125.1| - 0.039 13.6 0.1 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|55377275|ref|YP_135125.1| - 0.06 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2328 PF10090.4 gi|55377275|ref|YP_135125.1| - 0.076 12.2 0.1 0.66 9.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2328) Sigma70_r4_2 PF08281.7 gi|55377275|ref|YP_135125.1| - 0.092 12.2 0.2 1.2 8.6 0.2 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 IF2_N PF04760.10 gi|55377275|ref|YP_135125.1| - 0.098 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region TetR_N PF00440.18 gi|55377275|ref|YP_135125.1| - 0.11 12.2 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_IclR PF09339.5 gi|55377275|ref|YP_135125.1| - 0.12 12.0 0.1 2.6 7.7 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain BPD_transp_1 PF00528.17 gi|55377276|ref|YP_135126.1| - 3.3e-17 62.6 7.6 3.3e-17 62.6 5.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|55377277|ref|YP_135127.1| - 5.5e-34 117.4 0.0 7.6e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377277|ref|YP_135127.1| - 4.6e-16 59.6 0.0 1.6e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55377277|ref|YP_135127.1| - 1.4e-08 34.2 0.1 1.7e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55377277|ref|YP_135127.1| - 6.3e-06 25.6 0.0 1.3e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55377277|ref|YP_135127.1| - 3.2e-05 24.0 2.0 0.00026 21.0 1.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|55377277|ref|YP_135127.1| - 8.9e-05 21.2 0.4 0.11 11.0 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|55377277|ref|YP_135127.1| - 0.00025 20.5 0.1 0.025 14.0 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|55377277|ref|YP_135127.1| - 0.00028 20.0 0.1 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|55377277|ref|YP_135127.1| - 0.00034 20.7 0.1 0.0009 19.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55377277|ref|YP_135127.1| - 0.0005 19.5 0.9 0.02 14.3 0.1 2.4 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|55377277|ref|YP_135127.1| - 0.0022 18.3 0.0 0.0047 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|55377277|ref|YP_135127.1| - 0.0034 17.1 0.1 0.009 15.7 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain AAA_15 PF13175.1 gi|55377277|ref|YP_135127.1| - 0.0053 15.8 0.0 0.12 11.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|55377277|ref|YP_135127.1| - 0.0054 16.6 0.0 0.0092 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55377277|ref|YP_135127.1| - 0.0067 16.6 0.1 0.053 13.7 0.0 2.3 1 1 2 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|55377277|ref|YP_135127.1| - 0.008 15.7 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55377277|ref|YP_135127.1| - 0.014 15.7 0.0 0.032 14.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain cobW PF02492.14 gi|55377277|ref|YP_135127.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|55377277|ref|YP_135127.1| - 0.028 14.3 1.1 0.21 11.5 0.2 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit TK PF00265.13 gi|55377277|ref|YP_135127.1| - 0.03 13.9 0.0 3.8 7.0 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase Arch_ATPase PF01637.13 gi|55377277|ref|YP_135127.1| - 0.03 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|55377277|ref|YP_135127.1| - 0.034 14.9 0.3 0.11 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|55377277|ref|YP_135127.1| - 0.043 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|55377277|ref|YP_135127.1| - 0.072 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|55377277|ref|YP_135127.1| - 0.073 12.9 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|55377277|ref|YP_135127.1| - 0.09 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|55377277|ref|YP_135127.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 APS_kinase PF01583.15 gi|55377277|ref|YP_135127.1| - 0.14 11.8 0.1 0.38 10.4 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase BPD_transp_1 PF00528.17 gi|55377278|ref|YP_135128.1| - 3.6e-21 75.5 6.4 3.6e-21 75.5 4.4 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|55377279|ref|YP_135129.1| - 5.9e-57 192.4 0.0 6.8e-57 192.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|55377279|ref|YP_135129.1| - 0.0083 15.7 0.0 0.14 11.7 0.0 2.0 2 0 0 2 2 2 1 NMT1/THI5 like Aminotran_3 PF00202.16 gi|55377280|ref|YP_135130.1| - 2.3e-68 230.5 0.0 8.7e-68 228.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Arginase PF00491.16 gi|55377281|ref|YP_135131.1| - 1.4e-73 247.5 5.0 1.7e-73 247.3 3.5 1.0 1 0 0 1 1 1 1 Arginase family ELFV_dehydrog PF00208.16 gi|55377282|ref|YP_135132.1| - 1.1e-70 237.9 0.4 2.4e-70 236.8 0.3 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|55377282|ref|YP_135132.1| - 2.2e-48 163.1 0.0 3.5e-48 162.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|55377282|ref|YP_135132.1| - 0.001 18.2 0.0 0.002 17.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|55377282|ref|YP_135132.1| - 0.019 12.4 0.0 0.027 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AlaDh_PNT_C PF01262.16 gi|55377282|ref|YP_135132.1| - 0.033 13.7 1.1 0.051 13.1 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain IclR PF01614.13 gi|55377283|ref|YP_135133.1| - 3.2e-35 120.6 0.7 6.7e-35 119.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55377283|ref|YP_135133.1| - 4e-10 39.1 0.1 1.4e-09 37.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55377283|ref|YP_135133.1| - 1.4e-07 30.7 0.1 4.5e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55377283|ref|YP_135133.1| - 7e-06 25.6 0.0 1.3e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|55377283|ref|YP_135133.1| - 0.00035 20.1 0.0 0.00056 19.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Cache_3 PF14827.1 gi|55377283|ref|YP_135133.1| - 0.00042 20.1 0.2 0.035 14.0 0.0 2.6 2 1 0 2 2 2 1 Sensory domain of two-component sensor kinase HTH_11 PF08279.7 gi|55377283|ref|YP_135133.1| - 0.00071 19.1 0.1 0.0028 17.2 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.1 gi|55377283|ref|YP_135133.1| - 0.0027 17.1 0.2 0.0073 15.8 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|55377283|ref|YP_135133.1| - 0.0043 16.8 0.2 0.019 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|55377283|ref|YP_135133.1| - 0.0058 16.3 0.1 0.033 13.8 0.0 2.3 3 0 0 3 3 3 1 MarR family FeoC PF09012.5 gi|55377283|ref|YP_135133.1| - 0.0074 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_Mga PF08280.6 gi|55377283|ref|YP_135133.1| - 0.014 15.1 0.2 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_34 PF13601.1 gi|55377283|ref|YP_135133.1| - 0.016 15.1 0.1 0.049 13.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|55377283|ref|YP_135133.1| - 0.019 14.6 0.0 0.053 13.2 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|55377283|ref|YP_135133.1| - 0.026 14.3 0.0 0.056 13.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1803 PF08820.5 gi|55377283|ref|YP_135133.1| - 0.042 13.5 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) PadR PF03551.9 gi|55377283|ref|YP_135133.1| - 0.051 13.3 0.1 0.15 11.8 0.0 1.9 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family DUF2203 PF09969.4 gi|55377283|ref|YP_135133.1| - 0.076 13.2 0.1 0.96 9.6 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Sulfolobus_pRN PF05584.6 gi|55377283|ref|YP_135133.1| - 0.15 12.0 0.2 0.61 10.0 0.0 1.9 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein XH PF03469.9 gi|55377283|ref|YP_135133.1| - 0.48 10.0 2.2 0.54 9.9 0.1 2.1 3 0 0 3 3 3 0 XH domain IL4 PF00727.13 gi|55377284|ref|YP_135134.1| - 0.1 12.4 0.0 9.9 6.0 0.0 2.3 2 0 0 2 2 2 0 Interleukin 4 Copper-bind PF00127.15 gi|55377285|ref|YP_135135.1| - 2.1e-19 69.5 0.4 4.1e-19 68.6 0.3 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|55377285|ref|YP_135135.1| - 3.8e-06 26.7 1.1 7.6e-05 22.5 0.7 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|55377285|ref|YP_135135.1| - 0.18 11.8 6.0 0.34 11.0 4.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence COX2 PF00116.15 gi|55377286|ref|YP_135136.1| - 5.3e-15 55.3 0.1 1e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|55377286|ref|YP_135136.1| - 0.00018 21.3 0.0 0.0004 20.2 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|55377286|ref|YP_135136.1| - 0.00022 20.9 3.8 0.00036 20.3 2.7 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NosD PF05048.8 gi|55377288|ref|YP_135138.1| - 2.1e-50 171.0 20.8 1.3e-45 155.4 11.1 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|55377288|ref|YP_135138.1| - 6.3e-23 81.2 24.7 6e-17 61.8 6.5 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|55377288|ref|YP_135138.1| - 5.6e-07 28.9 13.7 0.0015 17.6 0.8 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) ABC_tran PF00005.22 gi|55377289|ref|YP_135139.1| - 6e-29 101.0 0.0 1.2e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|55377289|ref|YP_135139.1| - 4.1e-11 43.3 0.0 3.6e-06 27.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|55377289|ref|YP_135139.1| - 0.032 14.7 0.0 0.085 13.3 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|55377289|ref|YP_135139.1| - 0.1 11.6 0.0 1.1 8.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|55377289|ref|YP_135139.1| - 0.17 10.3 0.0 0.23 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|55377289|ref|YP_135139.1| - 0.18 9.1 0.5 0.24 8.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane_2 PF12679.2 gi|55377290|ref|YP_135140.1| - 1.2e-20 73.5 18.4 3.2e-20 72.1 12.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|55377290|ref|YP_135140.1| - 0.003 16.7 8.5 0.003 16.7 5.9 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|55377290|ref|YP_135140.1| - 0.0038 16.4 12.1 0.005 16.0 8.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|55377290|ref|YP_135140.1| - 0.41 9.6 10.6 0.12 11.3 5.5 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein HisG PF01634.13 gi|55377291|ref|YP_135141.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 ATP phosphoribosyltransferase Spc7 PF08317.6 gi|55377292|ref|YP_135142.1| - 1.4e-05 23.9 3.9 2.2e-05 23.2 2.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|55377292|ref|YP_135142.1| - 0.00025 21.2 3.6 0.55 10.5 0.6 3.5 2 1 1 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.1 gi|55377292|ref|YP_135142.1| - 0.00046 20.1 3.9 0.014 15.3 0.5 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4200) WEMBL PF05701.6 gi|55377292|ref|YP_135142.1| - 0.00053 18.5 2.0 0.00097 17.7 1.3 1.5 1 1 0 1 1 1 1 Weak chloroplast movement under blue light Laminin_II PF06009.7 gi|55377292|ref|YP_135142.1| - 0.00062 19.5 0.7 0.0017 18.1 0.4 1.8 1 1 0 1 1 1 1 Laminin Domain II Tropomyosin_1 PF12718.2 gi|55377292|ref|YP_135142.1| - 0.00073 19.4 3.0 0.00073 19.4 2.1 2.1 1 1 1 2 2 2 1 Tropomyosin like IncA PF04156.9 gi|55377292|ref|YP_135142.1| - 0.0008 19.0 10.8 0.0039 16.7 6.4 2.2 1 1 1 2 2 2 1 IncA protein MAD PF05557.8 gi|55377292|ref|YP_135142.1| - 0.0012 17.0 3.0 0.0015 16.7 2.1 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein ATG16 PF08614.6 gi|55377292|ref|YP_135142.1| - 0.0013 18.6 1.3 0.0013 18.6 0.9 2.2 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) LPP PF04728.8 gi|55377292|ref|YP_135142.1| - 0.0016 18.2 3.0 0.019 14.7 0.1 3.2 3 1 0 3 3 2 1 Lipoprotein leucine-zipper NIT PF08376.5 gi|55377292|ref|YP_135142.1| - 0.0016 17.9 2.7 0.0087 15.6 0.2 2.4 1 1 3 4 4 4 1 Nitrate and nitrite sensing CENP-F_leu_zip PF10473.4 gi|55377292|ref|YP_135142.1| - 0.0017 18.2 2.5 0.0017 18.2 1.7 2.3 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.1 gi|55377292|ref|YP_135142.1| - 0.0017 16.8 2.5 0.0024 16.4 1.7 1.1 1 0 0 1 1 1 1 AAA domain DUF3829 PF12889.2 gi|55377292|ref|YP_135142.1| - 0.0034 16.6 2.5 0.0061 15.7 0.8 2.0 2 1 1 3 3 3 1 Protein of unknown function (DUF3829) Baculo_PEP_C PF04513.7 gi|55377292|ref|YP_135142.1| - 0.0038 17.0 0.5 0.2 11.4 0.1 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus LXG PF04740.7 gi|55377292|ref|YP_135142.1| - 0.0039 17.0 1.4 0.0072 16.1 1.0 1.5 1 0 0 1 1 1 1 LXG domain of WXG superfamily Syntaxin-6_N PF09177.6 gi|55377292|ref|YP_135142.1| - 0.005 17.2 6.3 0.057 13.8 3.6 2.7 1 1 1 2 2 2 1 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|55377292|ref|YP_135142.1| - 0.006 16.1 3.1 0.062 12.8 1.4 2.3 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF869 PF05911.6 gi|55377292|ref|YP_135142.1| - 0.0064 14.8 4.4 0.0085 14.3 3.1 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Filament PF00038.16 gi|55377292|ref|YP_135142.1| - 0.0071 15.8 5.4 0.019 14.4 3.7 1.7 1 1 0 1 1 1 1 Intermediate filament protein DUF3450 PF11932.3 gi|55377292|ref|YP_135142.1| - 0.0073 15.5 5.4 0.027 13.7 1.8 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) APG6 PF04111.7 gi|55377292|ref|YP_135142.1| - 0.0095 15.0 5.0 0.014 14.4 3.4 1.3 1 0 0 1 1 1 1 Autophagy protein Apg6 EzrA PF06160.7 gi|55377292|ref|YP_135142.1| - 0.0097 14.1 2.3 0.014 13.5 1.6 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA PilJ PF13675.1 gi|55377292|ref|YP_135142.1| - 0.01 16.1 0.8 0.048 13.9 0.2 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1664 PF07889.7 gi|55377292|ref|YP_135142.1| - 0.012 15.4 3.5 0.11 12.2 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|55377292|ref|YP_135142.1| - 0.012 14.5 0.3 0.025 13.5 0.1 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FliJ PF02050.11 gi|55377292|ref|YP_135142.1| - 0.016 15.2 1.3 0.067 13.2 0.1 2.3 1 1 1 2 2 2 0 Flagellar FliJ protein Spectrin PF00435.16 gi|55377292|ref|YP_135142.1| - 0.019 15.2 1.2 0.019 15.2 0.8 2.3 1 1 1 2 2 2 0 Spectrin repeat COG2 PF06148.6 gi|55377292|ref|YP_135142.1| - 0.019 14.8 3.1 0.34 10.7 0.3 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1515 PF07439.6 gi|55377292|ref|YP_135142.1| - 0.02 14.6 1.6 0.067 13.0 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Flagellin_N PF00669.15 gi|55377292|ref|YP_135142.1| - 0.022 14.5 0.2 0.06 13.1 0.1 1.7 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region End3 PF12761.2 gi|55377292|ref|YP_135142.1| - 0.028 14.0 4.0 1.2 8.7 0.6 2.4 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 Reo_sigmaC PF04582.7 gi|55377292|ref|YP_135142.1| - 0.028 13.6 1.5 0.045 12.9 0.3 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein DUF904 PF06005.7 gi|55377292|ref|YP_135142.1| - 0.029 14.6 0.7 0.1 12.8 0.2 2.1 1 1 1 2 2 1 0 Protein of unknown function (DUF904) DUF3584 PF12128.3 gi|55377292|ref|YP_135142.1| - 0.036 11.4 7.0 0.048 11.0 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|55377292|ref|YP_135142.1| - 0.037 12.5 5.1 0.05 12.1 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) PspA_IM30 PF04012.7 gi|55377292|ref|YP_135142.1| - 0.038 13.3 3.6 0.33 10.2 2.2 2.4 1 1 0 1 1 1 0 PspA/IM30 family FlxA PF14282.1 gi|55377292|ref|YP_135142.1| - 0.04 13.8 4.5 0.87 9.5 1.0 2.4 2 0 0 2 2 2 0 FlxA-like protein Tropomyosin PF00261.15 gi|55377292|ref|YP_135142.1| - 0.046 12.8 9.0 0.086 11.9 6.2 1.5 1 0 0 1 1 1 0 Tropomyosin ALIX_LYPXL_bnd PF13949.1 gi|55377292|ref|YP_135142.1| - 0.053 12.4 6.8 0.083 11.8 4.7 1.4 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV AKNA PF12443.3 gi|55377292|ref|YP_135142.1| - 0.053 13.5 1.1 14 5.7 0.0 3.2 1 1 2 3 3 3 0 AT-hook-containing transcription factor BLOC1_2 PF10046.4 gi|55377292|ref|YP_135142.1| - 0.056 13.5 5.2 1.7 8.8 1.3 2.9 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prefoldin PF02996.12 gi|55377292|ref|YP_135142.1| - 0.061 12.9 5.7 5 6.7 0.4 3.7 1 1 3 4 4 4 0 Prefoldin subunit Mnd1 PF03962.10 gi|55377292|ref|YP_135142.1| - 0.062 12.9 3.7 0.17 11.5 2.4 1.9 1 1 0 1 1 1 0 Mnd1 family TPR_MLP1_2 PF07926.7 gi|55377292|ref|YP_135142.1| - 0.074 12.8 4.0 0.088 12.5 0.4 2.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Nsp1_C PF05064.8 gi|55377292|ref|YP_135142.1| - 0.078 12.6 5.5 0.17 11.4 3.2 1.8 1 1 1 2 2 2 0 Nsp1-like C-terminal region FH2 PF02181.18 gi|55377292|ref|YP_135142.1| - 0.079 11.8 2.5 1.6 7.5 0.1 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain HOOK PF05622.7 gi|55377292|ref|YP_135142.1| - 0.1 10.4 7.1 0.14 9.9 4.9 1.2 1 0 0 1 1 1 0 HOOK protein AAA_23 PF13476.1 gi|55377292|ref|YP_135142.1| - 0.1 12.8 2.4 0.18 12.1 1.7 1.5 1 0 0 1 1 1 0 AAA domain Acyl-CoA_dh_2 PF08028.6 gi|55377292|ref|YP_135142.1| - 0.12 12.6 0.3 0.33 11.2 0.1 1.8 2 0 0 2 2 1 0 Acyl-CoA dehydrogenase, C-terminal domain DivIVA PF05103.8 gi|55377292|ref|YP_135142.1| - 0.12 12.4 8.2 0.77 9.8 1.1 2.8 2 1 0 3 3 2 0 DivIVA protein HR1 PF02185.11 gi|55377292|ref|YP_135142.1| - 0.12 12.1 1.7 21 4.9 0.0 3.4 1 1 2 3 3 3 0 Hr1 repeat TMCO5 PF14992.1 gi|55377292|ref|YP_135142.1| - 0.12 11.4 8.2 0.21 10.6 5.7 1.3 1 0 0 1 1 1 0 TMCO5 family DUF948 PF06103.6 gi|55377292|ref|YP_135142.1| - 0.13 12.1 0.4 0.39 10.6 0.2 2.0 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF948) MbeD_MobD PF04899.7 gi|55377292|ref|YP_135142.1| - 0.13 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 MbeD/MobD like Cob_adeno_trans PF01923.13 gi|55377292|ref|YP_135142.1| - 0.13 11.9 5.6 0.58 9.9 1.2 2.7 1 1 2 3 3 3 0 Cobalamin adenosyltransferase DUF972 PF06156.8 gi|55377292|ref|YP_135142.1| - 0.15 12.4 2.4 6.5 7.1 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Bacillus_HBL PF05791.6 gi|55377292|ref|YP_135142.1| - 0.17 11.2 1.5 0.35 10.1 0.3 1.9 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF4407 PF14362.1 gi|55377292|ref|YP_135142.1| - 0.17 10.8 4.7 0.26 10.2 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FbpA PF05833.6 gi|55377292|ref|YP_135142.1| - 0.22 10.0 3.8 0.78 8.2 2.6 1.7 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Herpes_UL6 PF01763.11 gi|55377292|ref|YP_135142.1| - 0.22 9.6 1.7 0.32 9.1 1.2 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like Fib_alpha PF08702.5 gi|55377292|ref|YP_135142.1| - 0.23 11.5 0.9 0.6 10.2 0.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Syntaxin PF00804.20 gi|55377292|ref|YP_135142.1| - 0.26 11.4 6.2 0.21 11.7 1.8 2.4 1 1 1 2 2 2 0 Syntaxin DivIC PF04977.10 gi|55377292|ref|YP_135142.1| - 0.26 10.8 10.9 2.6 7.5 0.1 3.8 2 1 0 4 4 3 0 Septum formation initiator Cytochrom_B562 PF07361.6 gi|55377292|ref|YP_135142.1| - 0.29 11.5 3.4 0.4 11.1 1.4 1.9 1 1 1 2 2 1 0 Cytochrome b562 Sipho_Gp157 PF05565.6 gi|55377292|ref|YP_135142.1| - 0.31 10.6 4.9 1.2 8.6 2.7 2.2 1 1 0 1 1 1 0 Siphovirus Gp157 Fmp27_WPPW PF10359.4 gi|55377292|ref|YP_135142.1| - 0.35 9.2 2.7 0.44 8.9 1.1 1.6 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Seryl_tRNA_N PF02403.17 gi|55377292|ref|YP_135142.1| - 0.35 10.8 6.3 0.87 9.6 0.6 3.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Cortex-I_coil PF09304.5 gi|55377292|ref|YP_135142.1| - 0.42 10.6 7.3 1.7 8.6 2.3 2.9 1 1 1 2 2 2 0 Cortexillin I, coiled coil Cauli_AT PF03233.8 gi|55377292|ref|YP_135142.1| - 0.47 10.1 1.8 6.4 6.4 0.0 2.3 1 1 1 2 2 2 0 Aphid transmission protein IFT57 PF10498.4 gi|55377292|ref|YP_135142.1| - 0.48 9.1 7.8 1.5 7.4 5.4 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Hemerythrin PF01814.18 gi|55377292|ref|YP_135142.1| - 0.5 10.5 4.2 3.6 7.7 2.8 2.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain FlaC_arch PF05377.6 gi|55377292|ref|YP_135142.1| - 0.51 10.2 5.6 0.47 10.3 0.1 3.3 3 1 1 4 4 2 0 Flagella accessory protein C (FlaC) V-SNARE PF05008.10 gi|55377292|ref|YP_135142.1| - 1.1 9.4 4.3 2.1 8.5 0.2 2.9 1 1 2 3 3 2 0 Vesicle transport v-SNARE protein N-terminus CorA PF01544.13 gi|55377292|ref|YP_135142.1| - 1.2 8.1 5.0 3.7 6.4 0.1 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein TMF_DNA_bd PF12329.3 gi|55377292|ref|YP_135142.1| - 1.3 8.9 8.5 2.3 8.0 0.5 3.2 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF4254 PF14063.1 gi|55377292|ref|YP_135142.1| - 1.9 8.0 8.9 1.4 8.5 3.1 2.6 2 1 0 2 2 1 0 Protein of unknown function (DUF4254) Phage_GP20 PF06810.6 gi|55377292|ref|YP_135142.1| - 2.9 7.2 9.6 0.4 10.1 2.6 2.4 1 1 2 3 3 2 0 Phage minor structural protein GP20 TMF_TATA_bd PF12325.3 gi|55377292|ref|YP_135142.1| - 4 7.1 9.3 8.1 6.1 5.1 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Bap31 PF05529.7 gi|55377292|ref|YP_135142.1| - 4.2 6.7 5.6 4.7 6.6 2.0 2.2 2 1 0 2 2 1 0 B-cell receptor-associated protein 31-like Med9 PF07544.8 gi|55377292|ref|YP_135142.1| - 5.1 6.9 6.7 44 3.8 3.2 3.1 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 MerR-DNA-bind PF09278.6 gi|55377292|ref|YP_135142.1| - 5.2 7.5 6.0 8.2 6.9 1.5 2.9 2 1 1 3 3 3 0 MerR, DNA binding DUF241 PF03087.9 gi|55377292|ref|YP_135142.1| - 5.4 6.4 6.6 5.6 6.3 0.9 2.3 1 1 1 2 2 2 0 Arabidopsis protein of unknown function Prefoldin_2 PF01920.15 gi|55377292|ref|YP_135142.1| - 6.7 6.5 10.3 1.1 9.0 0.6 3.5 2 1 1 3 3 2 0 Prefoldin subunit Lactamase_B_2 PF12706.2 gi|55377293|ref|YP_135143.1| - 4e-17 62.3 0.8 5.3e-17 61.9 0.6 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55377293|ref|YP_135143.1| - 7.6e-13 48.4 0.2 9.7e-13 48.1 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|55377293|ref|YP_135143.1| - 0.027 14.1 10.4 0.33 10.5 7.2 2.4 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily DUF3038 PF11237.3 gi|55377293|ref|YP_135143.1| - 0.1 12.3 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) Usp PF00582.21 gi|55377294|ref|YP_135144.1| - 4.9e-29 101.3 2.0 5.5e-29 101.1 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|55377294|ref|YP_135144.1| - 0.07 13.2 0.9 0.13 12.3 0.6 1.6 1 1 0 1 1 1 0 von Willebrand factor type A domain DUF964 PF06133.6 gi|55377295|ref|YP_135145.1| - 4.1e-22 78.2 10.1 4.6e-22 78.0 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) IncA PF04156.9 gi|55377295|ref|YP_135145.1| - 0.79 9.2 6.0 1.1 8.8 4.1 1.3 1 0 0 1 1 1 0 IncA protein MCPsignal PF00015.16 gi|55377296|ref|YP_135146.1| - 2.4e-41 141.6 52.7 7.3e-39 133.5 24.7 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.19 gi|55377296|ref|YP_135146.1| - 2.4e-15 56.2 0.0 1.2e-14 54.0 0.0 2.2 2 0 0 2 2 1 1 PAS fold PAS_4 PF08448.5 gi|55377296|ref|YP_135146.1| - 3.2e-12 46.4 2.7 4.8e-12 45.8 0.1 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|55377296|ref|YP_135146.1| - 1.1e-11 45.0 0.7 6e-11 42.6 0.0 2.6 3 1 1 4 4 2 1 PAS domain PAS_8 PF13188.1 gi|55377296|ref|YP_135146.1| - 2.3e-06 27.2 0.0 9.9e-06 25.2 0.0 2.1 1 0 0 1 1 1 1 PAS domain Laminin_II PF06009.7 gi|55377296|ref|YP_135146.1| - 7e-06 25.8 29.3 0.00095 18.9 4.9 3.9 2 2 1 3 3 3 3 Laminin Domain II DUF948 PF06103.6 gi|55377296|ref|YP_135146.1| - 0.0016 18.2 24.2 0.11 12.4 0.7 4.9 2 2 3 5 5 5 1 Bacterial protein of unknown function (DUF948) CHASE3 PF05227.8 gi|55377296|ref|YP_135146.1| - 0.0028 17.3 4.2 0.0028 17.3 2.9 4.2 1 1 1 3 3 2 1 CHASE3 domain Flagellar_rod PF05149.7 gi|55377296|ref|YP_135146.1| - 0.0029 16.8 23.7 0.038 13.1 4.6 3.1 1 1 1 3 3 3 2 Paraflagellar rod protein PAS_7 PF12860.2 gi|55377296|ref|YP_135146.1| - 0.0049 16.8 0.0 0.0049 16.8 0.0 4.1 2 2 1 4 4 4 1 PAS fold Muted PF14942.1 gi|55377296|ref|YP_135146.1| - 0.0054 16.6 5.9 0.0054 16.6 4.1 3.1 2 2 0 2 2 2 1 Organelle biogenesis, Muted-like protein BLOC1_2 PF10046.4 gi|55377296|ref|YP_135146.1| - 0.0059 16.7 24.0 0.076 13.1 0.6 4.6 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAF_3 PF13492.1 gi|55377296|ref|YP_135146.1| - 0.0082 16.2 0.0 0.033 14.2 0.0 2.1 1 0 0 1 1 1 1 GAF domain AAA_27 PF13514.1 gi|55377296|ref|YP_135146.1| - 0.022 12.4 30.8 0.036 11.7 21.3 1.3 1 0 0 1 1 1 0 AAA domain DUF2451 PF10474.4 gi|55377296|ref|YP_135146.1| - 0.027 14.2 0.7 0.12 12.0 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function C-terminus (DUF2451) HAUS6_N PF14661.1 gi|55377296|ref|YP_135146.1| - 0.042 13.2 15.4 0.04 13.2 0.4 2.2 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus FlgN PF05130.7 gi|55377296|ref|YP_135146.1| - 0.064 13.4 30.2 0.3 11.3 9.0 3.7 1 1 2 3 3 3 0 FlgN protein Alpha-2-MRAP_C PF06401.6 gi|55377296|ref|YP_135146.1| - 0.097 12.5 13.8 2.8 7.7 3.2 3.2 1 1 2 3 3 3 0 Alpha-2-macroglobulin RAP, C-terminal domain Hemerythrin PF01814.18 gi|55377296|ref|YP_135146.1| - 0.12 12.5 16.7 0.15 12.1 2.4 3.6 1 1 3 4 4 4 0 Hemerythrin HHE cation binding domain IncA PF04156.9 gi|55377296|ref|YP_135146.1| - 0.17 11.4 34.0 0.49 9.9 0.8 3.3 1 1 2 3 3 3 0 IncA protein ApoO PF09769.4 gi|55377296|ref|YP_135146.1| - 0.17 11.5 6.3 2.7 7.6 0.1 2.9 2 1 1 3 3 3 0 Apolipoprotein O Fib_alpha PF08702.5 gi|55377296|ref|YP_135146.1| - 0.21 11.7 18.4 0.056 13.5 3.6 3.2 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family ISG65-75 PF11727.3 gi|55377296|ref|YP_135146.1| - 0.24 10.4 28.0 0.097 11.7 5.0 3.0 1 1 2 3 3 3 0 Invariant surface glycoprotein COG2 PF06148.6 gi|55377296|ref|YP_135146.1| - 0.24 11.2 26.7 0.92 9.3 1.4 4.7 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 FH2 PF02181.18 gi|55377296|ref|YP_135146.1| - 0.29 9.9 19.7 0.22 10.3 1.8 3.2 2 1 1 3 3 3 0 Formin Homology 2 Domain Sec5 PF15469.1 gi|55377296|ref|YP_135146.1| - 0.39 10.4 13.8 0.56 9.9 5.9 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 Spectrin PF00435.16 gi|55377296|ref|YP_135146.1| - 0.44 10.8 26.3 0.19 12.0 3.8 4.2 2 2 3 5 5 5 0 Spectrin repeat Lipoprotein_7 PF01540.11 gi|55377296|ref|YP_135146.1| - 0.45 9.5 27.9 0.93 8.5 11.7 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein DUF883 PF05957.8 gi|55377296|ref|YP_135146.1| - 0.48 10.8 32.1 0.061 13.7 3.1 4.6 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF883) Mnd1 PF03962.10 gi|55377296|ref|YP_135146.1| - 0.5 9.9 28.8 0.78 9.3 2.8 3.3 1 1 2 3 3 3 0 Mnd1 family DUF812 PF05667.6 gi|55377296|ref|YP_135146.1| - 0.57 8.6 35.8 0.12 10.9 14.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Syntaxin PF00804.20 gi|55377296|ref|YP_135146.1| - 0.69 10.1 34.0 2.5 8.3 2.0 4.5 1 1 3 4 4 4 0 Syntaxin DUF4200 PF13863.1 gi|55377296|ref|YP_135146.1| - 0.71 9.8 22.7 0.031 14.2 2.2 3.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4200) APG17 PF04108.7 gi|55377296|ref|YP_135146.1| - 0.74 8.5 23.2 1.3 7.7 5.1 3.3 1 1 2 3 3 3 0 Autophagy protein Apg17 TMP_2 PF06791.8 gi|55377296|ref|YP_135146.1| - 1 8.9 25.1 1.1 8.7 3.2 3.3 1 1 2 3 3 3 0 Prophage tail length tape measure protein DUF1395 PF07160.7 gi|55377296|ref|YP_135146.1| - 1.5 8.2 17.0 2.7 7.4 1.9 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1395) DUF1664 PF07889.7 gi|55377296|ref|YP_135146.1| - 1.5 8.6 27.2 1.3 8.8 1.0 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|55377296|ref|YP_135146.1| - 2.1 6.0 23.2 3.2 5.4 14.5 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Dor1 PF04124.7 gi|55377296|ref|YP_135146.1| - 2.5 6.4 17.3 0.85 8.0 3.3 3.1 1 1 1 2 2 2 0 Dor1-like family Peptidase_C65 PF10275.4 gi|55377296|ref|YP_135146.1| - 3.1 7.0 11.4 6.5 6.0 0.4 3.4 1 1 3 4 4 4 0 Peptidase C65 Otubain Reo_sigmaC PF04582.7 gi|55377296|ref|YP_135146.1| - 3.3 6.8 24.0 1.4 8.0 5.7 2.6 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|55377296|ref|YP_135146.1| - 4 5.9 26.2 2.5 6.6 5.5 2.7 1 1 1 2 2 2 0 Spc7 kinetochore protein Prominin PF05478.6 gi|55377296|ref|YP_135146.1| - 6.3 4.1 19.2 0.74 7.2 4.0 2.5 1 1 1 2 2 2 0 Prominin Fzo_mitofusin PF04799.8 gi|55377296|ref|YP_135146.1| - 6.5 6.0 11.6 3.5 6.9 0.4 3.4 2 2 0 3 3 3 0 fzo-like conserved region Mod_r PF07200.8 gi|55377296|ref|YP_135146.1| - 6.6 6.6 20.7 1.2 9.0 1.7 3.8 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF3107 PF11305.3 gi|55377296|ref|YP_135146.1| - 6.7 6.6 15.1 9.2 6.2 0.1 4.3 2 1 1 4 4 4 0 Protein of unknown function (DUF3107) Tweety PF04906.8 gi|55377296|ref|YP_135146.1| - 7.2 4.9 15.1 0.24 9.7 2.1 2.9 1 1 1 3 3 3 0 Tweety LXG PF04740.7 gi|55377296|ref|YP_135146.1| - 7.6 6.2 28.0 1.7 8.3 3.1 3.5 1 1 1 3 3 3 0 LXG domain of WXG superfamily Diphthamide_syn PF01866.12 gi|55377297|ref|YP_135147.1| - 8.9e-95 317.4 0.0 1e-94 317.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF3529 PF12046.3 gi|55377297|ref|YP_135147.1| - 0.18 10.7 0.0 0.29 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) Peptidase_M54 PF07998.6 gi|55377298|ref|YP_135148.1| - 2.3e-05 24.2 0.0 3.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M54 LemA PF04011.7 gi|55377300|ref|YP_135150.1| - 4.4e-37 126.9 0.1 5.4e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 LemA family Hemerythrin PF01814.18 gi|55377300|ref|YP_135150.1| - 0.011 15.9 2.6 0.014 15.5 1.8 1.2 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF651 PF04895.7 gi|55377300|ref|YP_135150.1| - 0.017 14.7 0.1 3.5 7.2 0.1 2.4 2 1 0 2 2 2 0 Archaeal protein of unknown function (DUF651) Zw10 PF06248.8 gi|55377300|ref|YP_135150.1| - 0.033 12.3 0.1 0.038 12.1 0.0 1.0 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Phage_GPO PF05929.6 gi|55377300|ref|YP_135150.1| - 0.06 12.6 0.2 0.072 12.3 0.2 1.2 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase IncA PF04156.9 gi|55377300|ref|YP_135150.1| - 1.2 8.7 3.3 1.3 8.5 1.4 1.7 1 1 1 2 2 2 0 IncA protein HalX PF08663.5 gi|55377300|ref|YP_135150.1| - 2.6 8.0 9.1 2.2 8.3 1.3 3.2 2 1 1 3 3 3 0 HalX domain HATPase_c PF02518.21 gi|55377301|ref|YP_135151.1| - 6.2e-27 93.5 0.0 1.3e-26 92.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55377301|ref|YP_135151.1| - 7.3e-25 87.1 0.7 3.5e-12 46.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|55377301|ref|YP_135151.1| - 7.1e-23 80.9 0.1 1.3e-13 51.2 0.0 3.5 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|55377301|ref|YP_135151.1| - 8.9e-17 60.9 0.0 2.8e-07 30.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|55377301|ref|YP_135151.1| - 2.6e-10 40.1 0.1 9.2e-10 38.3 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|55377301|ref|YP_135151.1| - 1.3e-08 34.4 0.0 2.4e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain GAF_2 PF13185.1 gi|55377301|ref|YP_135151.1| - 1.9e-07 31.6 0.1 1.9e-07 31.6 0.1 2.9 4 0 0 4 4 4 1 GAF domain PAS_8 PF13188.1 gi|55377301|ref|YP_135151.1| - 2.1e-07 30.5 0.0 3.7e-05 23.4 0.0 2.8 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|55377301|ref|YP_135151.1| - 3.6e-05 23.5 0.1 8.1e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55377301|ref|YP_135151.1| - 0.00011 21.8 0.3 0.00026 20.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|55377301|ref|YP_135151.1| - 0.00016 21.7 0.0 0.00041 20.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|55377301|ref|YP_135151.1| - 0.0065 16.7 0.0 0.76 10.0 0.1 3.0 2 1 0 2 2 2 1 PAS domain Response_reg PF00072.19 gi|55377302|ref|YP_135152.1| - 3.3e-19 68.9 0.0 3.8e-19 68.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55377303|ref|YP_135153.1| - 2.2e-19 69.1 0.0 4.3e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|55377303|ref|YP_135153.1| - 9.6e-14 51.3 0.1 2e-13 50.2 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.1 gi|55377303|ref|YP_135153.1| - 8.8e-05 22.2 0.1 0.00026 20.7 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|55377303|ref|YP_135153.1| - 0.0047 16.6 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|55377303|ref|YP_135153.1| - 0.076 13.0 5.6 0.086 12.8 0.1 3.3 1 1 2 3 3 3 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55377303|ref|YP_135153.1| - 0.077 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|55377304|ref|YP_135154.1| - 1.7e-20 72.7 0.0 4.1e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55377304|ref|YP_135154.1| - 2.1e-10 40.5 0.3 6.6e-10 39.0 0.2 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|55377304|ref|YP_135154.1| - 1.4e-08 34.9 0.1 3.5e-08 33.7 0.1 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|55377304|ref|YP_135154.1| - 1.7e-05 24.6 1.0 7.3e-05 22.5 0.0 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|55377304|ref|YP_135154.1| - 0.00057 20.4 0.1 0.025 15.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|55377304|ref|YP_135154.1| - 0.0057 16.3 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|55377304|ref|YP_135154.1| - 0.0066 16.4 0.1 0.024 14.6 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|55377304|ref|YP_135154.1| - 0.018 15.1 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 GAF domain PAS PF00989.19 gi|55377304|ref|YP_135154.1| - 0.073 12.8 0.1 0.5 10.1 0.0 2.4 2 1 1 3 3 3 0 PAS fold Methyltransf_26 PF13659.1 gi|55377305|ref|YP_135155.1| - 3.5e-15 56.0 0.1 5.1e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55377305|ref|YP_135155.1| - 3.3e-13 49.3 0.0 5e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|55377305|ref|YP_135155.1| - 7.5e-13 48.4 0.0 1e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|55377305|ref|YP_135155.1| - 1.6e-09 38.3 0.0 2.9e-09 37.5 0.0 1.7 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55377305|ref|YP_135155.1| - 1.9e-09 37.2 0.0 2.8e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|55377305|ref|YP_135155.1| - 4e-09 36.0 0.0 5.6e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|55377305|ref|YP_135155.1| - 1.5e-07 31.8 0.0 3.3e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377305|ref|YP_135155.1| - 9.7e-07 29.0 0.0 2.1e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|55377305|ref|YP_135155.1| - 2.4e-06 27.0 0.0 3.3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|55377305|ref|YP_135155.1| - 1.4e-05 24.7 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55377305|ref|YP_135155.1| - 1.9e-05 23.9 0.0 2.6e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|55377305|ref|YP_135155.1| - 0.00029 21.2 0.0 0.00055 20.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377305|ref|YP_135155.1| - 0.00066 19.4 0.0 0.00079 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|55377305|ref|YP_135155.1| - 0.00089 18.3 0.0 0.0013 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|55377305|ref|YP_135155.1| - 0.0067 16.4 0.0 0.0072 16.3 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase N6_Mtase PF02384.11 gi|55377305|ref|YP_135155.1| - 0.0072 15.4 0.0 0.012 14.6 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase CMAS PF02353.15 gi|55377305|ref|YP_135155.1| - 0.0073 15.4 0.0 0.0099 14.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|55377305|ref|YP_135155.1| - 0.0089 15.5 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|55377305|ref|YP_135155.1| - 0.06 12.9 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_9 PF08003.6 gi|55377305|ref|YP_135155.1| - 0.091 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) FmrO PF07091.6 gi|55377305|ref|YP_135155.1| - 0.094 11.6 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Rhomboid PF01694.17 gi|55377306|ref|YP_135156.1| - 5.7e-07 29.6 10.6 5.7e-07 29.6 7.4 2.3 2 0 0 2 2 2 1 Rhomboid family DUF4131 PF13567.1 gi|55377306|ref|YP_135156.1| - 1.4 8.3 28.4 0.77 9.1 0.3 4.0 2 1 2 4 4 4 0 Domain of unknown function (DUF4131) DoxX PF07681.7 gi|55377307|ref|YP_135157.1| - 5.2e-09 36.3 10.7 5.2e-09 36.3 7.4 1.6 2 0 0 2 2 2 1 DoxX SURF4 PF02077.10 gi|55377307|ref|YP_135157.1| - 0.00041 19.8 0.2 0.00065 19.1 0.1 1.3 1 0 0 1 1 1 1 SURF4 family HR_lesion PF05514.6 gi|55377307|ref|YP_135157.1| - 0.0021 17.9 0.9 0.0044 16.8 0.3 1.7 1 1 1 2 2 2 1 HR-like lesion-inducing HxlR PF01638.12 gi|55377308|ref|YP_135158.1| - 3.5e-22 77.8 0.0 4.1e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|55377308|ref|YP_135158.1| - 5.1e-08 33.1 0.0 6.9e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|55377308|ref|YP_135158.1| - 3e-06 27.1 0.0 4.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|55377308|ref|YP_135158.1| - 7.5e-05 22.3 0.1 0.00011 21.7 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|55377308|ref|YP_135158.1| - 0.00022 20.8 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55377308|ref|YP_135158.1| - 0.00031 20.4 0.2 0.00045 19.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|55377308|ref|YP_135158.1| - 0.00037 20.2 0.0 0.0006 19.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|55377308|ref|YP_135158.1| - 0.00062 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55377308|ref|YP_135158.1| - 0.00088 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|55377308|ref|YP_135158.1| - 0.003 17.3 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Trp_repressor PF01371.14 gi|55377308|ref|YP_135158.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein DUF2250 PF10007.4 gi|55377308|ref|YP_135158.1| - 0.018 14.9 0.1 2.5 8.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|55377308|ref|YP_135158.1| - 0.037 13.5 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.7 gi|55377308|ref|YP_135158.1| - 0.082 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|55377308|ref|YP_135158.1| - 0.088 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PAS_6 PF08348.6 gi|55377308|ref|YP_135158.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 YheO-like PAS domain HTH_IclR PF09339.5 gi|55377308|ref|YP_135158.1| - 0.11 12.0 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HLH PF00010.21 gi|55377309|ref|YP_135159.1| - 0.13 11.9 0.1 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain Glycos_transf_2 PF00535.21 gi|55377310|ref|YP_135160.1| - 2e-18 66.6 0.0 3.1e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377310|ref|YP_135160.1| - 5.9e-09 36.0 0.0 9.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|55377310|ref|YP_135160.1| - 8.2e-07 29.2 0.0 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|55377310|ref|YP_135160.1| - 0.00075 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain UPF0060 PF02694.10 gi|55377310|ref|YP_135160.1| - 0.071 13.1 1.8 0.11 12.4 1.3 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family Glyco_transf_21 PF13506.1 gi|55377310|ref|YP_135160.1| - 0.078 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 TrmB PF01978.14 gi|55377311|ref|YP_135161.1| - 3.6e-19 68.2 0.0 8e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|55377311|ref|YP_135161.1| - 0.00015 21.2 0.0 0.00029 20.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|55377311|ref|YP_135161.1| - 0.0071 15.9 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 MarR family Amidohydro_4 PF13147.1 gi|55377311|ref|YP_135161.1| - 0.061 13.3 0.1 0.086 12.8 0.1 1.2 1 0 0 1 1 1 0 Amidohydrolase Rrf2 PF02082.15 gi|55377311|ref|YP_135161.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Glycos_transf_1 PF00534.15 gi|55377312|ref|YP_135162.1| - 4.5e-28 97.8 0.0 5.5e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55377312|ref|YP_135162.1| - 8.5e-15 55.0 0.1 1.1e-14 54.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55377312|ref|YP_135162.1| - 2.4e-08 34.1 0.2 1.6e-07 31.4 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|55377313|ref|YP_135163.1| - 1.1e-24 87.1 0.3 1.6e-24 86.7 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55377313|ref|YP_135163.1| - 5e-05 22.7 0.1 0.00013 21.4 0.0 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.17 gi|55377314|ref|YP_135164.1| - 6.6e-12 45.4 0.1 2.1e-11 43.8 0.1 1.8 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|55377314|ref|YP_135164.1| - 3.9e-05 23.1 0.0 5.6e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.7 gi|55377315|ref|YP_135165.1| - 0.022 14.4 0.2 0.057 13.0 0.0 1.8 2 0 0 2 2 2 0 PglZ domain Sulfatase PF00884.18 gi|55377316|ref|YP_135166.1| - 1.4e-41 142.6 0.1 1.9e-41 142.2 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55377316|ref|YP_135166.1| - 1e-05 25.0 3.2 0.00027 20.3 2.2 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|55377316|ref|YP_135166.1| - 0.01 14.2 0.0 0.34 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF229) Polysacc_synt_C PF14667.1 gi|55377317|ref|YP_135167.1| - 2.2e-17 63.2 20.1 2.2e-17 63.2 14.0 4.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|55377317|ref|YP_135167.1| - 7.5e-13 48.3 21.6 1.2e-12 47.6 6.8 2.4 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|55377317|ref|YP_135167.1| - 2.3e-12 46.9 47.1 2.2e-07 30.5 9.7 3.3 3 1 0 3 3 3 3 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|55377317|ref|YP_135167.1| - 2.5e-06 26.1 12.8 2.5e-06 26.1 8.9 2.7 2 1 1 3 3 3 2 MviN-like protein Sulfatase PF00884.18 gi|55377318|ref|YP_135168.1| - 2.6e-37 128.6 0.4 3.2e-37 128.3 0.3 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|55377318|ref|YP_135168.1| - 0.068 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|55377319|ref|YP_135169.1| - 3.1e-29 101.6 0.0 4.6e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55377319|ref|YP_135169.1| - 1.8e-18 66.9 0.0 5.2e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55377319|ref|YP_135169.1| - 4e-09 36.6 0.0 9.1e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|55377320|ref|YP_135170.1| - 1e-20 74.1 0.1 1.3e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377320|ref|YP_135170.1| - 1e-11 45.0 0.6 2e-11 44.1 0.4 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55377320|ref|YP_135170.1| - 4.2e-09 35.8 0.6 4e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|55377320|ref|YP_135170.1| - 0.087 12.5 2.4 0.31 10.7 1.6 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 STT3 PF02516.9 gi|55377321|ref|YP_135171.1| - 3.7e-23 82.2 22.2 9.4e-23 80.9 15.4 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF3582 PF12122.3 gi|55377321|ref|YP_135171.1| - 3.9 7.5 6.0 73 3.4 0.3 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3582) 4HBT PF03061.17 gi|55377324|ref|YP_135174.1| - 3.1e-17 62.4 0.0 4.3e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|55377324|ref|YP_135174.1| - 6.9e-06 26.5 0.0 8e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|55377324|ref|YP_135174.1| - 0.032 13.1 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase PadR PF03551.9 gi|55377325|ref|YP_135175.1| - 2.3e-16 59.3 0.8 2.8e-16 59.0 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|55377325|ref|YP_135175.1| - 0.0012 18.6 0.2 0.0016 18.2 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|55377325|ref|YP_135175.1| - 0.0013 18.9 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|55377325|ref|YP_135175.1| - 0.1 12.2 0.1 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TraB PF01963.12 gi|55377326|ref|YP_135176.1| - 1.8e-37 129.1 0.2 8.2e-20 71.3 0.0 2.2 2 0 0 2 2 2 2 TraB family DUF1517 PF07466.6 gi|55377326|ref|YP_135176.1| - 5.4 5.9 7.0 5.6 5.8 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1517) Peptidase_M50 PF02163.17 gi|55377327|ref|YP_135177.1| - 1.1e-11 44.0 13.4 8.8e-11 41.1 9.3 2.1 1 1 0 1 1 1 1 Peptidase family M50 AIRS_C PF02769.17 gi|55377328|ref|YP_135178.1| - 2.1e-21 76.5 0.0 3e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|55377328|ref|YP_135178.1| - 4.9e-16 58.7 1.9 1e-15 57.7 0.9 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain CBS PF00571.23 gi|55377330|ref|YP_135180.1| - 6.8e-18 64.1 0.7 3.4e-09 36.3 0.0 2.6 2 1 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|55377330|ref|YP_135180.1| - 5.9e-13 48.8 1.3 1.2e-12 47.8 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55377330|ref|YP_135180.1| - 4.8e-12 45.5 0.1 2e-11 43.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|55377330|ref|YP_135180.1| - 4.7e-10 39.3 0.0 9e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|55377330|ref|YP_135180.1| - 5.9e-05 22.6 0.4 0.00012 21.6 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|55377330|ref|YP_135180.1| - 0.00012 21.8 0.1 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|55377330|ref|YP_135180.1| - 0.002 18.2 0.0 0.0049 17.0 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|55377330|ref|YP_135180.1| - 0.019 14.3 0.2 0.15 11.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55377330|ref|YP_135180.1| - 0.068 12.8 0.2 0.46 10.1 0.1 2.3 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|55377330|ref|YP_135180.1| - 0.084 12.5 0.2 0.84 9.3 0.0 2.3 2 0 0 2 2 2 0 MarR family DUF3618 PF12277.3 gi|55377330|ref|YP_135180.1| - 0.15 12.1 2.9 0.16 11.9 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) DUF555 PF04475.7 gi|55377331|ref|YP_135181.1| - 4.8e-49 164.5 0.1 6.5e-49 164.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|55377331|ref|YP_135181.1| - 0.12 11.8 0.2 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.7 gi|55377331|ref|YP_135181.1| - 0.15 12.1 0.7 0.56 10.2 0.1 2.0 2 0 0 2 2 2 0 Dodecin Proteasome PF00227.21 gi|55377332|ref|YP_135182.1| - 9.3e-45 152.2 0.4 1.1e-44 152.0 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Methyltransf_21 PF05050.7 gi|55377333|ref|YP_135183.1| - 1.4e-25 90.1 0.0 2e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|55377333|ref|YP_135183.1| - 7.2e-06 26.5 0.0 1.2e-05 25.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|55377333|ref|YP_135183.1| - 8.5e-06 25.0 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|55377333|ref|YP_135183.1| - 0.013 15.1 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DOT1 PF08123.8 gi|55377333|ref|YP_135183.1| - 0.064 12.5 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Histone methylation protein DOT1 PGM_PMM_I PF02878.11 gi|55377334|ref|YP_135184.1| - 1.3e-32 112.1 0.0 3.4e-32 110.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|55377334|ref|YP_135184.1| - 8.4e-22 77.4 0.4 1.8e-21 76.3 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|55377334|ref|YP_135184.1| - 4e-13 49.1 0.0 1.4e-12 47.4 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|55377334|ref|YP_135184.1| - 0.0018 18.2 0.0 0.0045 17.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF362 PF04015.7 gi|55377334|ref|YP_135184.1| - 0.014 14.9 0.0 28 4.0 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF362) dCMP_cyt_deam_1 PF00383.17 gi|55377335|ref|YP_135185.1| - 1.4e-16 59.9 0.0 1.5e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|55377335|ref|YP_135185.1| - 5.7e-13 48.9 0.1 7.3e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region YwqJ-deaminase PF14431.1 gi|55377335|ref|YP_135185.1| - 0.029 14.2 0.2 0.1 12.4 0.2 1.7 1 1 0 1 1 1 0 YwqJ-like deaminase LmjF365940-deam PF14421.1 gi|55377335|ref|YP_135185.1| - 0.53 9.6 2.1 2.5 7.4 0.1 2.0 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases PNP_UDP_1 PF01048.15 gi|55377336|ref|YP_135186.1| - 3.7e-46 156.9 1.4 4.5e-46 156.7 0.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|55377337|ref|YP_135187.1| - 1.4e-16 60.9 0.0 2.4e-16 60.2 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55377337|ref|YP_135187.1| - 1.9e-08 34.5 0.1 8e-07 29.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377337|ref|YP_135187.1| - 0.00011 22.3 0.2 0.097 12.7 0.0 3.1 3 1 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|55377337|ref|YP_135187.1| - 0.0012 18.4 0.4 1.5 8.3 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|55377337|ref|YP_135187.1| - 0.044 13.5 0.7 12 5.6 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding HrcA_DNA-bdg PF03444.10 gi|55377338|ref|YP_135188.1| - 1.8e-39 132.9 0.1 2.7e-39 132.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|55377338|ref|YP_135188.1| - 1.4e-07 31.5 0.0 2.7e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|55377338|ref|YP_135188.1| - 8.8e-07 28.4 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|55377338|ref|YP_135188.1| - 0.0016 17.9 0.1 0.0044 16.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|55377338|ref|YP_135188.1| - 0.0091 15.6 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_terminase PF10668.4 gi|55377338|ref|YP_135188.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_20 PF12840.2 gi|55377338|ref|YP_135188.1| - 0.06 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.6 gi|55377338|ref|YP_135188.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Epimerase PF01370.16 gi|55377339|ref|YP_135189.1| - 3.7e-40 137.8 0.4 4.6e-40 137.5 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55377339|ref|YP_135189.1| - 3.8e-12 45.4 0.4 1.3e-11 43.7 0.3 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|55377339|ref|YP_135189.1| - 7.9e-11 41.3 0.3 1e-10 40.9 0.2 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|55377339|ref|YP_135189.1| - 9.6e-10 37.7 0.1 8.1e-07 28.2 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|55377339|ref|YP_135189.1| - 1.7e-09 37.0 0.2 2.3e-06 26.7 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|55377339|ref|YP_135189.1| - 6.2e-07 29.5 0.0 7.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|55377339|ref|YP_135189.1| - 2.5e-05 24.2 0.4 0.017 15.0 0.1 2.4 1 1 0 2 2 2 2 short chain dehydrogenase KR PF08659.5 gi|55377339|ref|YP_135189.1| - 0.086 12.5 0.1 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 KR domain Arginase PF00491.16 gi|55377340|ref|YP_135190.1| - 3.2e-78 262.8 3.0 3.8e-78 262.5 2.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_topoisoIV PF00521.15 gi|55377341|ref|YP_135191.1| - 1.3e-151 505.2 0.0 1.8e-151 504.7 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|55377341|ref|YP_135191.1| - 4.9e-65 214.6 7.1 5.2e-14 51.2 0.1 6.6 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.20 gi|55377342|ref|YP_135192.1| - 5.7e-61 204.7 0.1 1.2e-60 203.7 0.0 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|55377342|ref|YP_135192.1| - 2.4e-30 104.0 0.0 4.8e-30 103.1 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|55377342|ref|YP_135192.1| - 3e-26 91.2 0.0 1.7e-25 88.8 0.0 2.3 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|55377342|ref|YP_135192.1| - 1.3e-20 73.1 0.0 2.5e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|55377342|ref|YP_135192.1| - 4.3e-05 23.1 0.0 8.8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|55377342|ref|YP_135192.1| - 0.013 15.4 0.0 0.04 13.9 0.0 1.8 1 0 0 1 1 1 0 Toprim domain Topo-VIb_trans PF09239.6 gi|55377343|ref|YP_135193.1| - 5.5e-67 224.2 0.0 1.5e-66 222.8 0.0 1.8 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|55377343|ref|YP_135193.1| - 2.3e-16 59.4 0.1 1.6e-15 56.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|55377343|ref|YP_135193.1| - 2.6e-13 49.7 0.2 2.5e-12 46.6 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55377343|ref|YP_135193.1| - 0.0015 18.3 2.4 0.0048 16.6 0.0 2.7 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|55377343|ref|YP_135193.1| - 0.023 14.4 0.0 0.079 12.6 0.0 1.9 1 0 0 1 1 1 0 GHKL domain Pro_CA PF00484.14 gi|55377343|ref|YP_135193.1| - 0.11 12.4 1.3 0.55 10.2 0.9 2.1 1 0 0 1 1 1 0 Carbonic anhydrase MAF_flag10 PF01973.13 gi|55377343|ref|YP_135193.1| - 0.16 11.4 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 TP6A_N PF04406.9 gi|55377344|ref|YP_135194.1| - 3.6e-20 71.3 0.3 6.1e-20 70.6 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase PQQ_2 PF13360.1 gi|55377345|ref|YP_135195.1| - 1.7e-37 129.1 28.9 4.3e-16 59.1 2.1 3.9 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|55377345|ref|YP_135195.1| - 2.4e-29 100.7 41.7 2.6e-05 24.3 0.4 9.2 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.16 gi|55377345|ref|YP_135195.1| - 1.8e-20 71.3 11.4 0.0033 16.8 0.0 7.9 8 0 0 8 8 8 6 PQQ enzyme repeat Ricin_B_lectin PF00652.17 gi|55377345|ref|YP_135195.1| - 3.8e-05 23.7 3.1 0.41 10.6 0.3 3.4 2 1 1 3 3 3 3 Ricin-type beta-trefoil lectin domain Pepsin-I3 PF06394.8 gi|55377345|ref|YP_135195.1| - 0.032 13.8 0.0 1.8 8.3 0.0 3.0 2 1 1 3 3 3 0 Pepsin inhibitor-3-like repeated domain PhrC_PhrF PF11131.3 gi|55377346|ref|YP_135196.1| - 5.9 6.5 6.0 0.5 9.9 0.4 2.0 2 0 0 2 2 2 0 Rap-phr extracellular signalling DUF347 PF03988.7 gi|55377346|ref|YP_135196.1| - 8.2 6.3 12.8 0.26 11.1 1.4 3.1 2 1 1 3 3 3 0 Repeat of Unknown Function (DUF347) Lactamase_B_3 PF13483.1 gi|55377347|ref|YP_135197.1| - 3.4e-25 88.6 0.1 5e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|55377347|ref|YP_135197.1| - 0.017 14.6 0.6 0.031 13.8 0.4 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DNA_ligase_A_M PF01068.16 gi|55377348|ref|YP_135198.1| - 2.9e-44 150.8 0.0 4.1e-44 150.3 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|55377348|ref|YP_135198.1| - 2.1e-39 135.1 0.0 6.6e-38 130.2 0.0 2.2 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|55377348|ref|YP_135198.1| - 9e-18 64.4 0.1 7.7e-17 61.4 0.0 2.5 3 0 0 3 3 3 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|55377348|ref|YP_135198.1| - 0.0031 17.1 0.0 0.014 15.0 0.0 2.1 1 1 0 1 1 1 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.14 gi|55377348|ref|YP_135198.1| - 0.0089 15.7 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 1 mRNA capping enzyme, catalytic domain GUCT PF08152.7 gi|55377348|ref|YP_135198.1| - 0.14 12.1 0.0 7 6.7 0.1 2.5 2 0 0 2 2 2 0 GUCT (NUC152) domain T2SF PF00482.18 gi|55377349|ref|YP_135199.1| - 1.3e-31 109.1 17.8 1.4e-19 70.2 1.5 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1129 PF06570.6 gi|55377349|ref|YP_135199.1| - 0.029 13.6 1.7 0.94 8.7 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) T2SE PF00437.15 gi|55377350|ref|YP_135200.1| - 2.3e-48 164.4 0.0 3.3e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein HTH_19 PF12844.2 gi|55377350|ref|YP_135200.1| - 0.011 15.7 0.8 0.059 13.4 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain FtsK_SpoIIIE PF01580.13 gi|55377350|ref|YP_135200.1| - 0.023 14.1 0.0 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|55377350|ref|YP_135200.1| - 0.025 14.0 0.0 0.061 12.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|55377350|ref|YP_135200.1| - 0.074 13.1 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RHH_1 PF01402.16 gi|55377350|ref|YP_135200.1| - 0.096 12.6 2.7 0.17 11.8 0.1 2.8 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family Mg_chelatase PF01078.16 gi|55377350|ref|YP_135200.1| - 0.15 11.2 0.0 0.32 10.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PAS_4 PF08448.5 gi|55377352|ref|YP_135202.1| - 0.0059 16.6 0.0 0.0092 16.0 0.0 1.2 1 0 0 1 1 1 1 PAS fold SIR2 PF02146.12 gi|55377353|ref|YP_135203.1| - 5.7e-42 143.4 0.0 7.6e-42 143.0 0.0 1.2 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|55377353|ref|YP_135203.1| - 0.00027 20.6 0.2 0.12 12.1 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DUF4129 PF13559.1 gi|55377353|ref|YP_135203.1| - 0.15 12.0 4.4 7.8 6.5 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) ATP-grasp_2 PF08442.5 gi|55377354|ref|YP_135204.1| - 2.7e-64 216.2 0.7 4e-64 215.7 0.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|55377354|ref|YP_135204.1| - 4.3e-21 75.1 4.4 4.3e-21 75.1 3.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|55377354|ref|YP_135204.1| - 7.3e-14 51.5 1.8 1.3e-11 44.1 0.5 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.14 gi|55377354|ref|YP_135204.1| - 2.1e-12 46.9 0.4 2.1e-12 46.9 0.3 2.1 3 0 0 3 3 3 1 CoA-ligase ATP-grasp_4 PF13535.1 gi|55377354|ref|YP_135204.1| - 7e-11 42.1 1.3 2e-10 40.7 0.2 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|55377354|ref|YP_135204.1| - 9.6e-09 34.8 0.1 1.7e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|55377354|ref|YP_135204.1| - 5.8e-07 29.2 0.5 1.2e-06 28.2 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|55377354|ref|YP_135204.1| - 0.00094 18.6 1.9 0.002 17.5 0.2 2.3 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|55377354|ref|YP_135204.1| - 0.0095 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55377354|ref|YP_135204.1| - 0.053 12.2 0.1 0.089 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon CoA_binding PF02629.14 gi|55377355|ref|YP_135205.1| - 7.7e-23 80.8 1.1 7.7e-23 80.8 0.7 2.1 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|55377355|ref|YP_135205.1| - 4.2e-13 49.1 0.6 8.7e-13 48.1 0.4 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|55377355|ref|YP_135205.1| - 1.1e-08 34.7 0.0 2.1e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|55377355|ref|YP_135205.1| - 4.2e-08 33.3 0.1 1.7e-06 28.1 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain HATPase_c PF02518.21 gi|55377356|ref|YP_135206.1| - 1.4e-17 63.3 0.0 2.4e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55377356|ref|YP_135206.1| - 3.2e-07 30.1 0.1 7.1e-07 29.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|55377356|ref|YP_135206.1| - 1.5e-05 24.9 0.0 2.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55377356|ref|YP_135206.1| - 2.1e-05 24.4 0.2 7.3e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55377356|ref|YP_135206.1| - 0.00073 19.2 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.10 gi|55377356|ref|YP_135206.1| - 0.075 13.0 0.2 3.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain zf-C2H2_6 PF13912.1 gi|55377357|ref|YP_135207.1| - 0.00042 20.1 3.6 0.026 14.4 0.4 2.6 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|55377357|ref|YP_135207.1| - 0.00054 20.0 0.5 0.28 11.3 0.0 2.4 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding Zn_ribbon_recom PF13408.1 gi|55377357|ref|YP_135207.1| - 0.0073 16.5 0.2 0.0073 16.5 0.2 2.0 1 1 1 2 2 2 1 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.1 gi|55377357|ref|YP_135207.1| - 0.012 15.2 1.4 0.03 13.9 1.0 1.8 1 1 0 1 1 1 0 zinc-finger of a C2HC-type HNH_5 PF14279.1 gi|55377357|ref|YP_135207.1| - 0.038 13.9 1.5 0.2 11.7 0.1 2.1 1 1 1 2 2 2 0 HNH endonuclease zf-H2C2_2 PF13465.1 gi|55377357|ref|YP_135207.1| - 0.039 14.2 6.0 3.8 7.9 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|55377357|ref|YP_135207.1| - 0.043 14.1 10.6 0.3 11.5 1.0 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type FYVE PF01363.16 gi|55377357|ref|YP_135207.1| - 0.11 12.3 2.5 0.14 12.0 1.7 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|55377357|ref|YP_135207.1| - 0.24 11.8 9.3 0.95 9.9 0.9 2.8 2 1 1 3 3 3 0 C2H2-type zinc finger zf-TRAF PF02176.13 gi|55377357|ref|YP_135207.1| - 0.31 11.4 2.7 0.44 10.9 0.3 2.1 2 1 0 2 2 2 0 TRAF-type zinc finger Zn-ribbon_8 PF09723.5 gi|55377357|ref|YP_135207.1| - 0.4 10.6 8.1 0.54 10.2 2.0 2.9 2 1 1 3 3 3 0 Zinc ribbon domain DZR PF12773.2 gi|55377357|ref|YP_135207.1| - 0.61 9.9 6.1 3.8 7.3 4.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.4 gi|55377357|ref|YP_135207.1| - 0.76 9.6 3.1 18 5.2 0.2 2.3 1 1 1 3 3 3 0 LITAF-like zinc ribbon domain RRN7 PF11781.3 gi|55377357|ref|YP_135207.1| - 0.99 8.9 10.7 0.17 11.4 1.1 2.9 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Trm112p PF03966.11 gi|55377357|ref|YP_135207.1| - 1 9.7 5.5 2.4 8.5 0.3 2.2 1 1 1 2 2 2 0 Trm112p-like protein DUF2296 PF10058.4 gi|55377357|ref|YP_135207.1| - 1.8 8.3 5.0 3.2 7.5 1.2 2.3 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-trcl PF13451.1 gi|55377357|ref|YP_135207.1| - 1.8 8.2 5.7 4.5 6.9 1.0 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain HypA PF01155.14 gi|55377357|ref|YP_135207.1| - 2.6 7.7 5.3 1.7 8.3 0.6 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Inhibitor_I67 PF11405.3 gi|55377357|ref|YP_135207.1| - 2.9 8.0 0.1 2.9 8.0 0.0 2.6 2 1 1 3 3 3 0 Bromelain inhibitor VI XPA_N PF01286.13 gi|55377357|ref|YP_135207.1| - 4.8 6.9 7.8 0.76 9.4 0.3 2.7 3 0 0 3 3 3 0 XPA protein N-terminal zf-AN1 PF01428.11 gi|55377357|ref|YP_135207.1| - 6.8 6.6 7.2 6.5 6.7 0.1 2.7 3 0 0 3 3 3 0 AN1-like Zinc finger Nudix_N_2 PF14803.1 gi|55377357|ref|YP_135207.1| - 8.3 6.1 7.6 4.1 7.1 0.9 2.9 3 1 0 3 3 3 0 Nudix N-terminal HATPase_c PF02518.21 gi|55377358|ref|YP_135208.1| - 1e-20 73.5 0.1 1.8e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55377358|ref|YP_135208.1| - 8.6e-11 41.6 1.2 8.6e-11 41.6 0.8 2.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|55377358|ref|YP_135208.1| - 1.9e-06 27.6 1.4 6.2e-06 26.0 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55377358|ref|YP_135208.1| - 0.039 13.6 0.1 0.3 10.7 0.0 2.3 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2TM PF13239.1 gi|55377358|ref|YP_135208.1| - 0.054 13.5 0.2 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 2TM domain Polyketide_cyc2 PF10604.4 gi|55377359|ref|YP_135209.1| - 8.5e-07 29.2 5.0 1e-06 28.9 3.5 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55377359|ref|YP_135209.1| - 0.0011 18.9 0.2 0.0016 18.4 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3931 PF13082.1 gi|55377359|ref|YP_135209.1| - 0.066 13.0 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) AHSA1 PF08327.6 gi|55377359|ref|YP_135209.1| - 0.23 11.5 2.9 2.1 8.4 1.8 2.2 1 1 1 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein ABC_tran PF00005.22 gi|55377360|ref|YP_135210.1| - 4.5e-29 101.5 0.0 9.3e-29 100.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|55377360|ref|YP_135210.1| - 6.6e-16 59.1 0.0 4.2e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SRP54 PF00448.17 gi|55377360|ref|YP_135210.1| - 0.00015 21.2 0.0 0.00063 19.2 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|55377360|ref|YP_135210.1| - 0.00037 20.8 0.5 0.00068 20.0 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55377360|ref|YP_135210.1| - 0.0011 19.7 0.3 0.0043 17.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55377360|ref|YP_135210.1| - 0.0014 18.0 0.2 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|55377360|ref|YP_135210.1| - 0.0053 16.3 0.6 0.031 13.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55377360|ref|YP_135210.1| - 0.01 15.9 0.1 0.027 14.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55377360|ref|YP_135210.1| - 0.014 15.2 0.1 0.054 13.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|55377360|ref|YP_135210.1| - 0.015 14.4 0.0 2.9 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|55377360|ref|YP_135210.1| - 0.023 14.1 0.3 0.6 9.4 0.1 2.3 1 1 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|55377360|ref|YP_135210.1| - 0.028 14.0 0.8 0.81 9.2 0.0 2.8 2 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|55377360|ref|YP_135210.1| - 0.095 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|55377360|ref|YP_135210.1| - 0.1 11.9 0.2 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.1 gi|55377360|ref|YP_135210.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|55377360|ref|YP_135210.1| - 0.15 12.3 0.3 0.3 11.2 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|55377360|ref|YP_135210.1| - 0.22 11.8 1.6 1.5 9.0 0.8 2.4 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|55377361|ref|YP_135211.1| - 0.00018 20.5 1.7 0.00018 20.5 1.2 4.1 4 1 1 5 5 5 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|55377361|ref|YP_135211.1| - 0.97 8.4 33.7 0.029 13.4 17.4 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|55377362|ref|YP_135212.1| - 2.7e-20 72.6 0.0 3.5e-20 72.3 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|55377362|ref|YP_135212.1| - 9.5e-10 37.7 3.3 1.3e-09 37.3 2.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|55377362|ref|YP_135212.1| - 2.5e-08 33.3 6.6 4e-08 32.6 4.6 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|55377362|ref|YP_135212.1| - 4.8e-05 22.6 5.1 6.8e-05 22.1 3.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|55377362|ref|YP_135212.1| - 0.063 12.5 2.6 0.099 11.9 1.8 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Flavi_NS4A PF01350.12 gi|55377362|ref|YP_135212.1| - 1.3 8.5 9.8 2 7.9 2.5 2.5 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A Aldo_ket_red PF00248.16 gi|55377363|ref|YP_135213.1| - 1.8e-73 246.8 0.0 2e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.14 gi|55377363|ref|YP_135213.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain FtsX PF02687.16 gi|55377364|ref|YP_135214.1| - 0.041 13.6 4.2 0.051 13.3 2.9 1.1 1 0 0 1 1 1 0 FtsX-like permease family CDP-OH_P_tran_2 PF08009.6 gi|55377364|ref|YP_135214.1| - 0.12 12.1 0.1 0.12 12.1 0.0 2.2 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 Cation_ATPase_C PF00689.16 gi|55377364|ref|YP_135214.1| - 0.26 10.7 4.1 0.32 10.5 2.8 1.0 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Macro PF01661.16 gi|55377365|ref|YP_135215.1| - 1.7e-30 105.3 0.1 2.1e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 Macro domain DUF4377 PF14302.1 gi|55377365|ref|YP_135215.1| - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4377) DUF2071 PF09844.4 gi|55377366|ref|YP_135216.1| - 2.2e-76 256.0 0.0 2.5e-76 255.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|55377366|ref|YP_135216.1| - 2.6e-05 23.6 0.0 3.4e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF2071 PF09844.4 gi|55377367|ref|YP_135217.1| - 1.5e-09 37.6 0.0 1.6e-09 37.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) Response_reg PF00072.19 gi|55377368|ref|YP_135218.1| - 2.3e-22 79.1 0.1 4.9e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55377368|ref|YP_135218.1| - 3.7e-16 58.8 0.2 1.2e-15 57.2 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|55377368|ref|YP_135218.1| - 1.2e-15 57.1 0.1 2.2e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55377368|ref|YP_135218.1| - 3.5e-10 39.8 0.1 1.4e-09 37.9 0.0 2.1 1 1 1 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|55377368|ref|YP_135218.1| - 1.1e-06 28.9 0.0 6.4e-06 26.4 0.0 2.4 3 0 0 3 3 2 1 PAS domain PAS PF00989.19 gi|55377368|ref|YP_135218.1| - 3.7e-06 26.7 0.0 8.9e-06 25.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|55377368|ref|YP_135218.1| - 5.3e-05 22.9 0.0 0.00027 20.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.10 gi|55377368|ref|YP_135218.1| - 0.00076 19.5 0.0 0.0024 17.8 0.0 1.9 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|55377368|ref|YP_135218.1| - 0.0008 19.0 0.1 0.0023 17.5 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|55377368|ref|YP_135218.1| - 0.0016 18.0 0.0 0.0061 16.2 0.0 1.9 2 0 0 2 2 2 1 GHKL domain B12-binding PF02310.14 gi|55377368|ref|YP_135218.1| - 0.0087 15.9 0.0 0.82 9.5 0.0 2.5 2 0 0 2 2 2 1 B12 binding domain HATPase_c_2 PF13581.1 gi|55377368|ref|YP_135218.1| - 0.028 14.1 0.0 0.098 12.4 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Hydrolase_6 PF13344.1 gi|55377369|ref|YP_135219.1| - 3e-22 78.4 0.0 6.5e-22 77.3 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55377369|ref|YP_135219.1| - 3.5e-22 77.9 0.1 1.1e-21 76.3 0.0 1.8 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|55377369|ref|YP_135219.1| - 2.4e-09 37.9 0.0 3.3e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|55377369|ref|YP_135219.1| - 1.2e-08 35.3 0.1 3.6e-05 24.0 0.0 3.1 3 1 0 3 3 3 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|55377369|ref|YP_135219.1| - 0.00015 21.1 0.2 0.00037 19.8 0.0 1.7 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.7 gi|55377369|ref|YP_135219.1| - 0.011 15.3 0.0 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DJ-1_PfpI PF01965.19 gi|55377370|ref|YP_135220.1| - 2.4e-36 124.3 0.1 3e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|55377370|ref|YP_135220.1| - 3e-11 42.8 0.0 4.4e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|55377370|ref|YP_135220.1| - 0.0013 18.2 0.0 0.0018 17.7 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|55377370|ref|YP_135220.1| - 0.0018 17.8 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|55377370|ref|YP_135220.1| - 0.029 13.2 0.0 0.046 12.6 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2082 PF09855.4 gi|55377371|ref|YP_135221.1| - 2.1e-28 97.9 0.2 2.4e-28 97.7 0.1 1.1 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|55377371|ref|YP_135221.1| - 0.00012 21.2 1.6 0.091 12.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55377371|ref|YP_135221.1| - 0.0022 17.7 1.8 0.44 10.3 1.2 2.2 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|55377371|ref|YP_135221.1| - 0.003 17.4 1.3 0.055 13.4 0.8 2.0 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|55377371|ref|YP_135221.1| - 0.0042 16.5 3.2 1.2 8.7 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|55377371|ref|YP_135221.1| - 0.015 14.7 1.3 0.25 10.8 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.14 gi|55377371|ref|YP_135221.1| - 0.021 14.2 1.1 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|55377371|ref|YP_135221.1| - 0.025 14.8 1.5 0.051 13.8 1.1 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|55377371|ref|YP_135221.1| - 0.025 14.5 0.1 2.8 7.9 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|55377371|ref|YP_135221.1| - 0.029 14.1 1.2 0.081 12.7 0.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|55377371|ref|YP_135221.1| - 0.052 13.2 1.8 0.61 9.7 1.2 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|55377371|ref|YP_135221.1| - 0.059 13.0 3.7 3.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Spt4 PF06093.8 gi|55377371|ref|YP_135221.1| - 0.075 12.9 0.1 2.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger TerY-C PF15616.1 gi|55377371|ref|YP_135221.1| - 0.083 12.8 1.5 0.16 11.9 1.0 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain DUF2225 PF09986.4 gi|55377371|ref|YP_135221.1| - 0.12 11.8 1.1 0.25 10.7 0.8 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Zn_Tnp_IS91 PF14319.1 gi|55377371|ref|YP_135221.1| - 0.13 11.7 0.4 6.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain GFA PF04828.9 gi|55377371|ref|YP_135221.1| - 0.17 11.8 1.2 3.4 7.6 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.5 gi|55377371|ref|YP_135221.1| - 0.2 11.1 3.4 6.2 6.4 0.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|55377371|ref|YP_135221.1| - 0.24 10.7 6.1 2 7.7 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|55377371|ref|YP_135221.1| - 0.24 11.1 4.2 5 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|55377371|ref|YP_135221.1| - 0.28 11.1 2.0 1.6 8.6 1.4 1.9 1 1 0 1 1 1 0 CpXC protein UPF0547 PF10571.4 gi|55377371|ref|YP_135221.1| - 0.3 10.8 2.8 3 7.5 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|55377371|ref|YP_135221.1| - 0.49 10.4 5.7 2.4 8.2 3.0 2.5 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|55377371|ref|YP_135221.1| - 1 9.4 6.2 5.4 7.1 1.1 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|55377371|ref|YP_135221.1| - 1.4 8.5 6.9 5.4 6.6 0.4 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|55377371|ref|YP_135221.1| - 5.5 6.4 6.6 1.6 8.2 0.2 2.2 2 0 0 2 2 2 0 HypF finger DUF3989 PF13150.1 gi|55377372|ref|YP_135222.1| - 0.09 12.2 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) DUF2946 PF11162.3 gi|55377372|ref|YP_135222.1| - 0.091 12.9 0.0 0.091 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) MTH865 PF07747.6 gi|55377373|ref|YP_135223.1| - 1.1e-21 76.2 0.1 1.3e-21 75.9 0.1 1.1 1 0 0 1 1 1 1 MTH865-like family BatA PF07584.6 gi|55377374|ref|YP_135224.1| - 0.018 15.2 0.5 0.019 15.1 0.4 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal Papilloma_E5A PF05776.7 gi|55377374|ref|YP_135224.1| - 0.057 13.5 0.1 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein CcoS PF03597.10 gi|55377374|ref|YP_135224.1| - 0.059 12.8 1.2 0.074 12.5 0.8 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Fe_dep_repr_C PF02742.10 gi|55377375|ref|YP_135225.1| - 1.3e-30 104.8 1.9 2.4e-30 104.0 1.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|55377375|ref|YP_135225.1| - 3.3e-20 71.7 0.3 1.6e-19 69.5 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|55377375|ref|YP_135225.1| - 7.3e-16 57.9 0.7 2.8e-15 56.0 0.1 2.1 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|55377375|ref|YP_135225.1| - 1.4e-08 34.2 0.0 3.6e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|55377375|ref|YP_135225.1| - 1.9e-07 30.6 0.0 4.4e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55377375|ref|YP_135225.1| - 1.4e-06 28.5 0.1 2.4e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|55377375|ref|YP_135225.1| - 1.9e-05 24.2 0.0 4.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|55377375|ref|YP_135225.1| - 0.00051 19.3 0.0 0.0017 17.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|55377375|ref|YP_135225.1| - 0.00054 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|55377375|ref|YP_135225.1| - 0.00067 19.3 0.0 0.0018 18.0 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|55377375|ref|YP_135225.1| - 0.0018 17.8 0.2 0.014 14.9 0.0 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain Topoisom_bac PF01131.15 gi|55377375|ref|YP_135225.1| - 0.0025 16.6 0.1 0.0037 16.1 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase Rrf2 PF02082.15 gi|55377375|ref|YP_135225.1| - 0.0043 17.1 0.0 0.01 15.9 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|55377375|ref|YP_135225.1| - 0.0043 16.8 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|55377375|ref|YP_135225.1| - 0.0068 15.8 0.0 0.051 13.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_13 PF11972.3 gi|55377375|ref|YP_135225.1| - 0.018 14.9 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain UPF0016 PF01169.14 gi|55377376|ref|YP_135226.1| - 4.8e-19 68.2 5.0 4.8e-19 68.2 3.5 1.6 2 0 0 2 2 2 1 Uncharacterized protein family UPF0016 LPAM_1 PF08139.7 gi|55377377|ref|YP_135227.1| - 0.064 13.4 0.8 0.12 12.6 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF756 PF05506.7 gi|55377377|ref|YP_135227.1| - 0.094 13.2 0.1 0.39 11.2 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF756) ABC-3 PF00950.12 gi|55377378|ref|YP_135228.1| - 1.9e-60 204.3 41.0 2.2e-60 204.1 28.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|55377378|ref|YP_135228.1| - 7.4e-05 21.7 37.1 7.4e-05 21.7 25.7 1.9 1 1 1 2 2 2 1 FecCD transport family DUF2407_C PF13373.1 gi|55377378|ref|YP_135228.1| - 0.11 12.3 0.4 0.11 12.3 0.3 2.0 2 0 0 2 2 2 0 DUF2407 C-terminal domain ABC_tran PF00005.22 gi|55377379|ref|YP_135229.1| - 4e-30 104.9 0.0 5.9e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377379|ref|YP_135229.1| - 4e-11 43.4 0.0 3.1e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55377379|ref|YP_135229.1| - 2.9e-05 23.5 0.0 6.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55377379|ref|YP_135229.1| - 3.6e-05 23.8 0.2 0.00037 20.5 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|55377379|ref|YP_135229.1| - 7.3e-05 22.1 0.0 0.0081 15.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|55377379|ref|YP_135229.1| - 0.00062 19.7 0.0 0.001 19.0 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|55377379|ref|YP_135229.1| - 0.0015 18.0 0.4 0.0029 17.1 0.2 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|55377379|ref|YP_135229.1| - 0.0023 18.7 0.2 0.0058 17.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|55377379|ref|YP_135229.1| - 0.0023 17.7 0.2 0.057 13.3 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|55377379|ref|YP_135229.1| - 0.0035 17.7 0.0 0.0049 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55377379|ref|YP_135229.1| - 0.0048 17.0 0.1 0.025 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|55377379|ref|YP_135229.1| - 0.0054 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|55377379|ref|YP_135229.1| - 0.0067 16.0 0.1 0.059 12.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55377379|ref|YP_135229.1| - 0.0071 15.7 0.6 0.025 14.0 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55377379|ref|YP_135229.1| - 0.011 15.5 0.1 0.023 14.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|55377379|ref|YP_135229.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|55377379|ref|YP_135229.1| - 0.018 14.2 0.0 0.1 11.7 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|55377379|ref|YP_135229.1| - 0.018 13.6 0.2 4.7 5.6 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|55377379|ref|YP_135229.1| - 0.03 13.5 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF87 PF01935.12 gi|55377379|ref|YP_135229.1| - 0.03 14.1 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|55377379|ref|YP_135229.1| - 0.062 13.5 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|55377379|ref|YP_135229.1| - 0.078 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|55377379|ref|YP_135229.1| - 0.085 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|55377379|ref|YP_135229.1| - 0.091 11.6 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|55377379|ref|YP_135229.1| - 0.098 12.3 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 NTPase AFG1_ATPase PF03969.11 gi|55377379|ref|YP_135229.1| - 0.12 11.1 0.1 0.86 8.3 0.0 1.9 2 0 0 2 2 2 0 AFG1-like ATPase RNA_helicase PF00910.17 gi|55377379|ref|YP_135229.1| - 0.16 12.1 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TroA PF01297.12 gi|55377380|ref|YP_135230.1| - 3.9e-42 144.2 0.1 4.8e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|55377380|ref|YP_135230.1| - 0.049 13.6 5.6 0.11 12.5 3.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Bacteriocin_II PF01721.13 gi|55377380|ref|YP_135230.1| - 0.079 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Class II bacteriocin HTH_24 PF13412.1 gi|55377381|ref|YP_135231.1| - 6e-16 57.5 0.0 9.7e-16 56.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55377381|ref|YP_135231.1| - 2.8e-15 55.5 3.0 2.8e-15 55.5 2.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|55377381|ref|YP_135231.1| - 1.5e-08 34.1 0.1 2.1e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|55377381|ref|YP_135231.1| - 2.7e-05 23.7 0.0 4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55377381|ref|YP_135231.1| - 3.8e-05 23.2 0.0 0.00014 21.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55377381|ref|YP_135231.1| - 4.9e-05 22.9 0.0 8.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55377381|ref|YP_135231.1| - 8.1e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Ta0938 PF11494.3 gi|55377381|ref|YP_135231.1| - 0.00013 22.0 1.0 0.0002 21.4 0.7 1.3 1 0 0 1 1 1 1 Ta0938 HTH_27 PF13463.1 gi|55377381|ref|YP_135231.1| - 0.00019 21.6 0.2 0.00058 20.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55377381|ref|YP_135231.1| - 0.0016 17.9 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|55377381|ref|YP_135231.1| - 0.0021 17.1 0.2 0.0048 16.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|55377381|ref|YP_135231.1| - 0.0026 17.6 0.0 0.006 16.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain YHS PF04945.8 gi|55377381|ref|YP_135231.1| - 0.014 15.2 1.1 0.025 14.4 0.7 1.3 1 0 0 1 1 1 0 YHS domain DUF2250 PF10007.4 gi|55377381|ref|YP_135231.1| - 0.025 14.4 0.0 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) ATPase-cat_bd PF12156.3 gi|55377381|ref|YP_135231.1| - 0.035 14.6 2.0 0.063 13.8 1.4 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.5 gi|55377381|ref|YP_135231.1| - 0.057 13.5 2.2 0.098 12.8 1.5 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain HTH_23 PF13384.1 gi|55377381|ref|YP_135231.1| - 0.14 11.8 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.1 gi|55377381|ref|YP_135231.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Shisa PF13908.1 gi|55377381|ref|YP_135231.1| - 1.2 9.2 4.1 1.8 8.7 2.8 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator E1-E2_ATPase PF00122.15 gi|55377382|ref|YP_135232.1| - 1.3e-53 181.3 0.6 2.7e-53 180.3 0.4 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|55377382|ref|YP_135232.1| - 1.2e-47 163.1 7.8 3.6e-47 161.5 5.4 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|55377382|ref|YP_135232.1| - 1.7e-26 92.1 0.0 7.1e-14 51.6 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|55377382|ref|YP_135232.1| - 5.6e-19 69.0 0.1 2e-18 67.2 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|55377382|ref|YP_135232.1| - 0.00012 21.7 0.7 0.043 13.3 0.9 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase ABC1 PF03109.11 gi|55377383|ref|YP_135233.1| - 3e-26 91.7 0.0 8.4e-26 90.2 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|55377383|ref|YP_135233.1| - 3.9e-05 23.5 0.8 0.00037 20.2 0.6 2.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family DPRP PF04244.8 gi|55377384|ref|YP_135234.1| - 3.3e-64 216.5 0.0 5.8e-64 215.6 0.0 1.4 1 1 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|55377384|ref|YP_135234.1| - 3.1e-08 33.1 0.0 8.1e-08 31.7 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase Copper-bind PF00127.15 gi|55377385|ref|YP_135235.1| - 1.2e-16 60.7 1.3 1.7e-16 60.2 0.1 1.9 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|55377385|ref|YP_135235.1| - 0.00035 20.3 1.1 0.00035 20.3 0.8 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cu-oxidase_3 PF07732.10 gi|55377385|ref|YP_135235.1| - 0.042 13.5 0.6 0.098 12.3 0.2 1.8 2 1 0 2 2 2 0 Multicopper oxidase UPF0233 PF06781.7 gi|55377386|ref|YP_135236.1| - 0.29 10.7 1.8 3.6 7.2 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) Copper-bind PF00127.15 gi|55377387|ref|YP_135237.1| - 1.1e-21 76.9 0.0 1.6e-14 53.9 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|55377387|ref|YP_135237.1| - 0.0004 20.1 1.1 0.0011 18.7 0.7 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MDMPI_N PF11716.3 gi|55377387|ref|YP_135237.1| - 0.06 13.7 0.9 0.15 12.5 0.4 1.7 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain FAA_hydrolase PF01557.13 gi|55377388|ref|YP_135238.1| - 4.8e-65 219.0 0.0 6.2e-65 218.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|55377388|ref|YP_135238.1| - 0.074 13.4 0.1 0.24 11.7 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) PDH PF02153.12 gi|55377389|ref|YP_135239.1| - 1.1e-12 47.4 2.9 1.6e-11 43.6 2.0 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|55377389|ref|YP_135239.1| - 1.6e-05 25.2 4.1 2.2e-05 24.8 0.5 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|55377389|ref|YP_135239.1| - 2.9e-05 24.5 0.7 2.9e-05 24.5 0.5 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|55377389|ref|YP_135239.1| - 0.00025 20.9 0.9 0.00025 20.9 0.6 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|55377389|ref|YP_135239.1| - 0.0016 18.1 5.7 0.0043 16.7 1.5 2.6 1 1 2 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55377389|ref|YP_135239.1| - 0.005 15.9 0.1 0.0089 15.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55377389|ref|YP_135239.1| - 0.022 14.2 0.4 0.082 12.3 0.3 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|55377389|ref|YP_135239.1| - 0.13 12.2 2.5 0.82 9.6 0.5 2.6 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|55377389|ref|YP_135239.1| - 0.28 10.5 2.7 0.16 11.3 0.2 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|55377389|ref|YP_135239.1| - 0.51 9.2 3.7 0.11 11.4 0.4 1.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|55377389|ref|YP_135239.1| - 0.84 9.4 5.8 1.6 8.5 0.2 3.1 2 1 1 3 3 3 0 ThiF family CoA_binding PF02629.14 gi|55377389|ref|YP_135239.1| - 0.85 10.1 8.9 0.071 13.6 1.0 2.7 2 1 1 3 3 3 0 CoA binding domain HOASN PF14515.1 gi|55377389|ref|YP_135239.1| - 6 7.3 12.9 0.24 11.7 0.3 3.2 2 1 1 3 3 3 0 Haem-oxygenase-associated N-terminal helices Methyltransf_12 PF08242.7 gi|55377390|ref|YP_135240.1| - 6.7e-08 32.9 0.1 1.9e-07 31.4 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377390|ref|YP_135240.1| - 7.9e-07 28.9 0.0 7.8e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377390|ref|YP_135240.1| - 2.6e-05 24.7 1.3 5.3e-05 23.7 0.2 2.1 2 0 0 2 2 2 1 Methyltransferase domain Rsm22 PF09243.5 gi|55377390|ref|YP_135240.1| - 0.003 16.6 0.0 0.0051 15.8 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 SurE PF01975.12 gi|55377391|ref|YP_135241.1| - 2.1e-44 151.2 0.3 2.6e-44 150.8 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE EamA PF00892.15 gi|55377392|ref|YP_135242.1| - 8.7e-31 106.5 23.0 1.3e-15 57.5 4.1 2.3 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|55377392|ref|YP_135242.1| - 0.0019 17.8 18.1 0.076 12.6 5.8 2.7 2 1 0 2 2 2 2 Triose-phosphate Transporter family Tetraspannin PF00335.15 gi|55377392|ref|YP_135242.1| - 1.4 8.1 12.6 8.7 5.5 2.1 3.4 1 1 1 2 2 2 0 Tetraspanin family tRNA_SAD PF07973.9 gi|55377393|ref|YP_135243.1| - 6.9e-13 48.2 0.3 1.3e-12 47.4 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|55377393|ref|YP_135243.1| - 2.1e-10 39.5 0.1 3.1e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|55377393|ref|YP_135243.1| - 4.5e-07 29.4 4.1 2.4e-06 27.1 2.6 2.3 2 0 0 2 2 2 1 DHHA1 domain CcmH PF03918.9 gi|55377394|ref|YP_135244.1| - 0.014 14.4 0.1 0.014 14.4 0.1 1.0 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DUF3188 PF11384.3 gi|55377394|ref|YP_135244.1| - 0.049 13.1 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) zinc_ribbon_2 PF13240.1 gi|55377395|ref|YP_135245.1| - 0.00012 21.4 1.7 0.00016 21.0 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55377395|ref|YP_135245.1| - 0.00015 21.5 0.5 0.00016 21.4 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|55377395|ref|YP_135245.1| - 0.00031 20.4 0.8 0.00039 20.0 0.5 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|55377395|ref|YP_135245.1| - 0.00059 19.5 0.3 0.00059 19.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|55377395|ref|YP_135245.1| - 0.00091 18.9 0.9 0.0014 18.3 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|55377395|ref|YP_135245.1| - 0.0014 17.7 2.7 0.0037 16.4 2.0 1.6 1 1 1 2 2 2 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|55377395|ref|YP_135245.1| - 0.0053 16.4 1.1 0.048 13.3 0.0 2.1 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit FdhE PF04216.7 gi|55377395|ref|YP_135245.1| - 0.0062 16.3 0.6 0.0062 16.3 0.4 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.5 gi|55377395|ref|YP_135245.1| - 0.0072 16.2 3.7 0.35 10.8 2.3 2.3 1 1 1 2 2 2 1 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|55377395|ref|YP_135245.1| - 0.0099 15.9 2.0 0.012 15.7 1.4 1.1 1 0 0 1 1 1 1 DnaJ central domain Stc1 PF12898.2 gi|55377395|ref|YP_135245.1| - 0.013 15.5 0.2 0.014 15.3 0.1 1.0 1 0 0 1 1 1 0 Stc1 domain DUF320 PF03777.8 gi|55377395|ref|YP_135245.1| - 0.024 14.4 0.0 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Small secreted domain (DUF320) zf-C3HC4_3 PF13920.1 gi|55377395|ref|YP_135245.1| - 0.025 14.2 0.4 0.028 14.0 0.3 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|55377395|ref|YP_135245.1| - 0.03 14.0 1.2 0.038 13.7 0.9 1.1 1 0 0 1 1 1 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.7 gi|55377395|ref|YP_135245.1| - 0.038 13.3 1.6 1.1 8.6 0.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|55377395|ref|YP_135245.1| - 0.05 13.2 3.0 0.58 9.8 2.4 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.7 gi|55377395|ref|YP_135245.1| - 0.057 13.4 5.6 0.14 12.2 0.7 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.6 gi|55377395|ref|YP_135245.1| - 0.061 12.9 2.7 0.072 12.7 0.5 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C3HC4_2 PF13923.1 gi|55377395|ref|YP_135245.1| - 0.098 12.6 0.4 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NRDD PF13597.1 gi|55377395|ref|YP_135245.1| - 0.1 10.6 0.3 0.11 10.5 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase NOB1_Zn_bind PF08772.6 gi|55377395|ref|YP_135245.1| - 0.1 12.4 0.5 0.12 12.2 0.3 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.2 gi|55377395|ref|YP_135245.1| - 0.11 12.3 4.6 0.77 9.6 0.1 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF678 PF05077.7 gi|55377395|ref|YP_135245.1| - 0.14 12.1 3.3 8.2 6.5 2.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF678) Nudix_N_2 PF14803.1 gi|55377395|ref|YP_135245.1| - 0.16 11.7 2.1 10 5.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF2387 PF09526.5 gi|55377395|ref|YP_135245.1| - 0.22 11.4 4.5 5.6 6.9 0.1 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF35_N PF12172.3 gi|55377395|ref|YP_135245.1| - 0.77 9.7 4.2 2.5 8.1 2.9 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|55377395|ref|YP_135245.1| - 1.1 9.0 3.6 5.4 6.8 2.4 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 HD PF01966.17 gi|55377397|ref|YP_135247.1| - 1.7e-08 34.4 4.7 2.3e-08 34.0 2.6 1.7 2 0 0 2 2 2 1 HD domain AhpC-TSA PF00578.16 gi|55377398|ref|YP_135248.1| - 5.3e-33 113.3 0.0 6.2e-33 113.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55377398|ref|YP_135248.1| - 8e-23 80.6 0.0 9.2e-23 80.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|55377398|ref|YP_135248.1| - 0.00037 20.0 0.0 0.00048 19.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|55377398|ref|YP_135248.1| - 0.0024 17.7 0.0 0.053 13.4 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme MttA_Hcf106 PF02416.11 gi|55377400|ref|YP_135250.1| - 5.2e-15 54.2 0.0 5.8e-15 54.1 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family GMC_oxred_C PF05199.8 gi|55377401|ref|YP_135251.1| - 1.3e-23 83.8 1.3 4.3e-23 82.1 0.9 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|55377401|ref|YP_135251.1| - 2.8e-19 69.3 0.0 6.3e-19 68.2 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|55377401|ref|YP_135251.1| - 1.5e-09 37.2 0.0 0.00012 21.0 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55377401|ref|YP_135251.1| - 1.9e-08 33.6 1.4 0.0028 16.5 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|55377401|ref|YP_135251.1| - 1.2e-05 24.5 0.4 0.00071 18.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|55377401|ref|YP_135251.1| - 4.5e-05 23.4 0.0 0.00014 21.7 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55377401|ref|YP_135251.1| - 5.7e-05 21.7 0.3 0.00061 18.3 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|55377401|ref|YP_135251.1| - 0.00023 20.2 0.1 0.00034 19.6 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|55377401|ref|YP_135251.1| - 0.0012 18.7 0.0 0.016 15.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377401|ref|YP_135251.1| - 0.0034 17.4 0.0 0.018 15.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55377401|ref|YP_135251.1| - 0.0059 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Fer4_7 PF12838.2 gi|55377401|ref|YP_135251.1| - 0.026 14.8 0.8 0.062 13.6 0.6 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|55377401|ref|YP_135251.1| - 0.038 14.4 0.0 0.14 12.5 0.0 2.0 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|55377401|ref|YP_135251.1| - 0.09 12.7 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain FAD_oxidored PF12831.2 gi|55377401|ref|YP_135251.1| - 0.21 10.6 3.2 0.11 11.6 0.7 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|55377401|ref|YP_135251.1| - 0.25 10.1 0.0 0.37 9.5 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Fer4_3 PF12798.2 gi|55377401|ref|YP_135251.1| - 1.1 9.9 3.5 2.7 8.7 2.4 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain DUF457 PF04307.9 gi|55377402|ref|YP_135252.1| - 7.4e-11 41.6 9.7 1e-10 41.1 6.7 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|55377402|ref|YP_135252.1| - 0.057 13.0 0.1 0.089 12.4 0.1 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C DUF3176 PF11374.3 gi|55377402|ref|YP_135252.1| - 0.093 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3176) CopD PF05425.8 gi|55377403|ref|YP_135253.1| - 1.4e-06 28.4 2.6 1.4e-06 28.4 1.8 1.9 1 1 1 2 2 2 1 Copper resistance protein D CheX PF13690.1 gi|55377404|ref|YP_135254.1| - 8.9e-09 35.1 0.1 1.7e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.7 gi|55377404|ref|YP_135254.1| - 1.5e-08 34.2 0.5 1.5e-08 34.2 0.4 2.1 3 0 0 3 3 3 1 CheC-like family Aminotran_1_2 PF00155.16 gi|55377405|ref|YP_135255.1| - 1.3e-63 215.1 0.0 1.5e-63 214.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|55377405|ref|YP_135255.1| - 1.5e-05 23.8 0.0 2.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Allinase DUF3798 PF12683.2 gi|55377405|ref|YP_135255.1| - 0.0023 17.0 0.0 0.0042 16.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3798) Cys_Met_Meta_PP PF01053.15 gi|55377405|ref|YP_135255.1| - 0.0057 14.9 0.0 0.0095 14.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CDP-OH_P_transf PF01066.16 gi|55377407|ref|YP_135257.1| - 2.8e-11 43.6 10.5 2.4e-10 40.6 7.3 2.1 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Glycoprotein_B PF00606.13 gi|55377407|ref|YP_135257.1| - 0.45 8.4 1.3 0.56 8.1 0.9 1.0 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B DUF1118 PF06549.7 gi|55377407|ref|YP_135257.1| - 0.71 10.0 5.3 0.21 11.7 0.5 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1118) Imm_superinfect PF14373.1 gi|55377407|ref|YP_135257.1| - 1.7 8.3 6.2 0.43 10.2 1.9 1.8 2 0 0 2 2 2 0 Superinfection immunity protein OrfB_IS605 PF01385.14 gi|55377408|ref|YP_135258.1| - 8.4e-24 84.2 0.9 1.4e-23 83.4 0.6 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|55377408|ref|YP_135258.1| - 1.8e-18 65.9 0.6 3.4e-18 65.0 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|55377408|ref|YP_135258.1| - 0.00023 20.3 0.0 0.00046 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L37e PF01907.14 gi|55377408|ref|YP_135258.1| - 0.11 12.2 0.5 0.31 10.8 0.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L37e IncFII_repA PF02387.10 gi|55377408|ref|YP_135258.1| - 0.32 10.0 3.3 0.27 10.3 0.4 1.9 2 0 0 2 2 2 0 IncFII RepA protein family HTH_3 PF01381.17 gi|55377409|ref|YP_135259.1| - 5.5e-10 38.9 1.7 7.6e-10 38.4 1.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|55377409|ref|YP_135259.1| - 2.7e-08 33.8 0.1 4.2e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|55377409|ref|YP_135259.1| - 3e-07 30.3 0.4 5e-07 29.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|55377409|ref|YP_135259.1| - 2.1e-05 24.0 0.4 3.4e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain SR-25 PF10500.4 gi|55377409|ref|YP_135259.1| - 0.00011 21.7 11.6 0.00014 21.4 8.0 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein COPR5 PF15340.1 gi|55377409|ref|YP_135259.1| - 0.0012 19.2 1.9 0.0017 18.7 1.3 1.2 1 0 0 1 1 1 1 Cooperator of PRMT5 family RPA_C PF08784.6 gi|55377409|ref|YP_135259.1| - 0.07 13.5 0.8 0.13 12.6 0.5 1.5 1 1 0 1 1 1 0 Replication protein A C terminal HTH_37 PF13744.1 gi|55377409|ref|YP_135259.1| - 0.088 12.6 0.2 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ZZ PF00569.12 gi|55377409|ref|YP_135259.1| - 0.13 11.8 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, ZZ type RAP1 PF07218.6 gi|55377409|ref|YP_135259.1| - 0.61 8.1 8.1 0.66 8.0 5.6 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Macoilin PF09726.4 gi|55377409|ref|YP_135259.1| - 1.4 7.1 8.9 1.6 6.9 6.2 1.1 1 0 0 1 1 1 0 Transmembrane protein Corona_nucleoca PF00937.13 gi|55377409|ref|YP_135259.1| - 2.5 6.9 8.9 3.1 6.6 6.2 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein SSP160 PF06933.6 gi|55377409|ref|YP_135259.1| - 5.1 4.9 10.1 6.8 4.5 7.0 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 HalX PF08663.5 gi|55377410|ref|YP_135260.1| - 4e-20 71.5 6.1 1e-19 70.2 4.2 1.8 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|55377410|ref|YP_135260.1| - 1.9e-16 60.0 1.0 3e-16 59.4 0.7 1.4 1 0 0 1 1 1 1 Response regulator receiver domain ERCC4 PF02732.10 gi|55377410|ref|YP_135260.1| - 0.036 13.8 1.6 0.045 13.4 0.7 1.5 2 0 0 2 2 2 0 ERCC4 domain CorA PF01544.13 gi|55377410|ref|YP_135260.1| - 0.12 11.4 3.5 0.17 10.8 2.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.1 gi|55377410|ref|YP_135260.1| - 0.6 10.5 4.1 1.1 9.6 1.3 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Bac_small_YrzI PF09501.5 gi|55377410|ref|YP_135260.1| - 1.8 8.5 4.3 0.47 10.3 0.4 2.1 2 0 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) TIM PF00121.13 gi|55377411|ref|YP_135261.1| - 1.4e-23 83.2 0.2 2e-14 53.2 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|55377411|ref|YP_135261.1| - 0.00011 21.3 1.0 0.00011 21.3 0.7 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|55377411|ref|YP_135261.1| - 0.0086 14.9 2.5 0.0086 14.9 1.7 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|55377411|ref|YP_135261.1| - 0.035 13.1 0.4 0.19 10.7 0.0 2.3 1 1 1 2 2 2 0 Indole-3-glycerol phosphate synthase AAA_10 PF12846.2 gi|55377412|ref|YP_135262.1| - 2.3e-17 63.3 9.2 1.2e-09 38.0 0.0 3.8 2 1 0 4 4 4 2 AAA-like domain DUF87 PF01935.12 gi|55377412|ref|YP_135262.1| - 3.7e-13 49.8 5.3 4.4e-13 49.5 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|55377412|ref|YP_135262.1| - 0.00024 21.8 4.6 0.00049 20.9 0.0 2.8 3 0 0 3 3 2 1 AAA domain DUF853 PF05872.7 gi|55377412|ref|YP_135262.1| - 0.00025 19.5 4.4 0.00079 17.8 0.0 2.6 3 0 0 3 3 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|55377412|ref|YP_135262.1| - 0.00047 19.6 0.1 0.008 15.6 0.0 2.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_13 PF13166.1 gi|55377412|ref|YP_135262.1| - 0.00085 17.9 4.2 0.0016 16.9 2.9 1.4 1 0 0 1 1 1 1 AAA domain NTR2 PF15458.1 gi|55377412|ref|YP_135262.1| - 0.001 18.3 2.6 0.001 18.3 1.8 2.9 3 0 0 3 3 3 1 Nineteen complex-related protein 2 APS_kinase PF01583.15 gi|55377412|ref|YP_135262.1| - 0.0018 17.9 0.5 0.055 13.1 0.0 2.7 3 0 0 3 3 2 1 Adenylylsulphate kinase CbiA PF01656.18 gi|55377412|ref|YP_135262.1| - 0.007 15.7 0.7 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Spc7 PF08317.6 gi|55377412|ref|YP_135262.1| - 0.0073 15.0 2.1 0.012 14.2 1.5 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein AAA_18 PF13238.1 gi|55377412|ref|YP_135262.1| - 0.0079 16.5 0.1 0.0079 16.5 0.0 2.6 3 0 0 3 3 2 1 AAA domain Med9 PF07544.8 gi|55377412|ref|YP_135262.1| - 0.008 15.8 4.5 0.02 14.6 3.1 1.7 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 AAA PF00004.24 gi|55377412|ref|YP_135262.1| - 0.0085 16.2 0.5 0.15 12.2 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TMF_DNA_bd PF12329.3 gi|55377412|ref|YP_135262.1| - 0.0095 15.7 6.3 0.043 13.6 4.3 2.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding FtsK_SpoIIIE PF01580.13 gi|55377412|ref|YP_135262.1| - 0.055 12.9 3.2 0.32 10.4 0.1 2.8 2 1 0 2 2 2 0 FtsK/SpoIIIE family IncA PF04156.9 gi|55377412|ref|YP_135262.1| - 0.09 12.3 11.9 0.24 10.9 8.3 1.7 1 0 0 1 1 1 0 IncA protein Atg14 PF10186.4 gi|55377412|ref|YP_135262.1| - 0.12 11.3 2.5 0.19 10.6 1.7 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|55377412|ref|YP_135262.1| - 0.28 10.7 5.7 1.2 8.7 4.0 2.1 1 0 0 1 1 1 0 Septum formation initiator Hpr_kinase_C PF07475.7 gi|55377412|ref|YP_135262.1| - 0.36 10.1 3.0 6 6.1 0.1 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_32 PF13654.1 gi|55377412|ref|YP_135262.1| - 0.4 9.2 6.7 0.76 8.3 3.9 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|55377412|ref|YP_135262.1| - 0.47 10.6 2.6 1.5 8.9 0.1 3.0 3 1 0 3 3 3 0 AAA domain Peptidase_C65 PF10275.4 gi|55377412|ref|YP_135262.1| - 0.49 9.7 2.8 0.96 8.7 1.9 1.5 1 0 0 1 1 1 0 Peptidase C65 Otubain APG6 PF04111.7 gi|55377412|ref|YP_135262.1| - 0.79 8.7 7.1 1.5 7.7 4.9 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|55377412|ref|YP_135262.1| - 2.2 6.0 4.4 3.2 5.5 3.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IFT57 PF10498.4 gi|55377412|ref|YP_135262.1| - 4.3 5.9 12.2 0.12 11.1 2.4 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Mnd1 PF03962.10 gi|55377412|ref|YP_135262.1| - 4.9 6.7 11.9 2 8.0 6.2 1.8 2 0 0 2 2 2 0 Mnd1 family IMS PF00817.15 gi|55377414|ref|YP_135264.1| - 2.4e-39 134.5 0.5 4e-39 133.7 0.3 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|55377414|ref|YP_135264.1| - 4.1e-13 49.3 0.0 6.5e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain HHH_5 PF14520.1 gi|55377414|ref|YP_135264.1| - 3.9e-06 26.9 0.4 1.1e-05 25.5 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|55377414|ref|YP_135264.1| - 4.3e-06 26.4 0.0 8.7e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|55377414|ref|YP_135264.1| - 0.0022 17.4 0.0 0.0079 15.7 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.6 gi|55377414|ref|YP_135264.1| - 0.0024 17.6 0.0 0.0089 15.8 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Cdd1 PF11731.3 gi|55377414|ref|YP_135264.1| - 0.039 13.8 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus Abhydrolase_6 PF12697.2 gi|55377414|ref|YP_135264.1| - 0.49 10.2 6.3 0.44 10.3 2.2 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family Methyltransf_11 PF08241.7 gi|55377416|ref|YP_135266.1| - 4e-18 65.7 0.1 6.6e-18 64.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377416|ref|YP_135266.1| - 1.2e-11 45.1 0.3 2.4e-11 44.1 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377416|ref|YP_135266.1| - 7.5e-11 42.2 0.1 1.3e-10 41.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377416|ref|YP_135266.1| - 5.4e-10 39.2 0.0 6.7e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55377416|ref|YP_135266.1| - 3.1e-09 36.5 0.0 4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55377416|ref|YP_135266.1| - 6.9e-09 36.0 0.1 1.3e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|55377416|ref|YP_135266.1| - 0.00013 21.4 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.13 gi|55377416|ref|YP_135266.1| - 0.00022 20.4 0.0 0.00029 20.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|55377416|ref|YP_135266.1| - 0.04 13.5 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|55377416|ref|YP_135266.1| - 0.092 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.9 gi|55377416|ref|YP_135266.1| - 0.17 11.0 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB tRNA-synt_1b PF00579.20 gi|55377417|ref|YP_135267.1| - 4.3e-58 196.7 0.0 5.2e-58 196.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DDE_Tnp_IS240 PF13610.1 gi|55377418|ref|YP_135268.1| - 2.6e-16 59.8 0.1 3.3e-16 59.5 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|55377418|ref|YP_135268.1| - 4.6e-06 26.7 0.2 7.7e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|55377418|ref|YP_135268.1| - 0.0001 21.6 0.2 0.00027 20.2 0.1 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|55377418|ref|YP_135268.1| - 0.0014 18.4 0.0 0.0041 16.8 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|55377418|ref|YP_135268.1| - 0.015 15.2 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PfkB PF00294.19 gi|55377419|ref|YP_135269.1| - 6.6e-42 143.6 0.4 7.4e-42 143.5 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PK PF00224.16 gi|55377420|ref|YP_135270.1| - 1.5e-114 382.2 4.7 2.8e-114 381.3 3.3 1.4 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|55377420|ref|YP_135270.1| - 4.3e-32 110.1 1.6 9.1e-32 109.0 1.1 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|55377420|ref|YP_135270.1| - 1.4e-14 53.4 2.6 7.9e-14 50.9 0.1 3.4 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|55377420|ref|YP_135270.1| - 0.013 14.4 1.7 0.029 13.2 0.5 1.9 1 1 1 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family ROK PF00480.15 gi|55377421|ref|YP_135271.1| - 2.2e-34 118.8 0.2 2.9e-34 118.4 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|55377421|ref|YP_135271.1| - 2.9e-05 23.4 0.1 8.5e-05 21.9 0.1 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|55377421|ref|YP_135271.1| - 4e-05 23.0 0.1 0.00014 21.3 0.1 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FtsA PF14450.1 gi|55377421|ref|YP_135271.1| - 0.095 12.5 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Cell division protein FtsA Hydant_A_N PF05378.8 gi|55377421|ref|YP_135271.1| - 0.11 11.9 0.3 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region AAA_16 PF13191.1 gi|55377422|ref|YP_135272.1| - 7.3e-12 45.6 0.6 6.2e-11 42.6 0.1 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55377422|ref|YP_135272.1| - 7.1e-07 29.4 0.0 2e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55377422|ref|YP_135272.1| - 0.0017 17.7 0.0 0.27 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|55377422|ref|YP_135272.1| - 0.018 14.7 0.0 0.04 13.6 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase PIGA PF08288.7 gi|55377422|ref|YP_135272.1| - 0.061 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) SMC_N PF02463.14 gi|55377422|ref|YP_135272.1| - 0.1 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55377422|ref|YP_135272.1| - 0.15 11.5 0.0 0.37 10.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain K1 PF02960.9 gi|55377423|ref|YP_135273.1| - 0.14 12.2 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 K1 glycoprotein FGGY_N PF00370.16 gi|55377424|ref|YP_135274.1| - 2.3e-74 249.7 0.0 3.2e-74 249.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|55377424|ref|YP_135274.1| - 8e-58 195.3 2.1 1.2e-57 194.6 1.5 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|55377424|ref|YP_135274.1| - 0.00056 19.2 0.5 0.021 14.1 0.1 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MCPsignal PF00015.16 gi|55377425|ref|YP_135275.1| - 5e-47 160.2 45.4 2.1e-44 151.6 21.1 3.2 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|55377425|ref|YP_135275.1| - 4.3e-42 144.7 0.4 4.9e-41 141.3 0.0 2.4 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55377425|ref|YP_135275.1| - 2.2e-19 70.3 0.0 3.7e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Seryl_tRNA_N PF02403.17 gi|55377425|ref|YP_135275.1| - 0.00085 19.3 22.7 0.012 15.6 1.6 4.9 3 2 0 5 5 5 2 Seryl-tRNA synthetase N-terminal domain Prp19 PF08606.6 gi|55377425|ref|YP_135275.1| - 0.0015 18.1 0.2 0.0077 15.9 0.1 2.3 2 0 0 2 2 1 1 Prp19/Pso4-like DUF1664 PF07889.7 gi|55377425|ref|YP_135275.1| - 0.0018 18.0 22.6 0.045 13.5 0.3 4.4 2 2 1 4 4 4 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|55377425|ref|YP_135275.1| - 0.0024 17.7 3.1 0.0024 17.7 2.1 4.8 3 1 1 5 5 5 1 Bacterial protein of unknown function (DUF948) DUF2959 PF11172.3 gi|55377425|ref|YP_135275.1| - 0.011 15.4 4.7 0.011 15.4 3.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2959) Med9 PF07544.8 gi|55377425|ref|YP_135275.1| - 0.018 14.7 0.0 0.018 14.7 0.0 3.1 4 1 0 4 4 2 0 RNA polymerase II transcription mediator complex subunit 9 Lzipper-MIP1 PF14389.1 gi|55377425|ref|YP_135275.1| - 0.039 14.0 0.2 0.039 14.0 0.1 2.7 3 0 0 3 3 1 0 Leucine-zipper of ternary complex factor MIP1 DUF4559 PF15112.1 gi|55377425|ref|YP_135275.1| - 0.07 12.2 13.0 0.073 12.2 1.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4559) BLOC1_2 PF10046.4 gi|55377425|ref|YP_135275.1| - 0.1 12.7 20.8 0.8 9.8 1.4 5.2 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Filament PF00038.16 gi|55377425|ref|YP_135275.1| - 0.24 10.8 25.1 0.47 9.8 10.1 3.8 2 1 1 3 3 3 0 Intermediate filament protein Laminin_II PF06009.7 gi|55377425|ref|YP_135275.1| - 0.31 10.7 33.4 0.22 11.2 2.9 4.7 4 2 2 6 6 4 0 Laminin Domain II IncA PF04156.9 gi|55377425|ref|YP_135275.1| - 0.38 10.3 19.8 1.5 8.3 0.2 4.2 2 1 1 3 3 3 0 IncA protein CENP-H PF05837.7 gi|55377425|ref|YP_135275.1| - 0.39 10.9 11.7 5.5 7.2 1.2 3.7 3 0 0 3 3 3 0 Centromere protein H (CENP-H) IFT57 PF10498.4 gi|55377425|ref|YP_135275.1| - 0.57 8.8 18.3 0.019 13.7 0.3 2.9 2 1 0 3 3 3 0 Intra-flagellar transport protein 57 Syntaxin-6_N PF09177.6 gi|55377425|ref|YP_135275.1| - 1 9.7 26.7 0.058 13.7 3.1 5.2 3 2 2 5 5 5 0 Syntaxin 6, N-terminal MutS_III PF05192.13 gi|55377425|ref|YP_135275.1| - 1.1 9.0 12.8 0.088 12.5 3.5 2.7 1 1 2 3 3 3 0 MutS domain III AAA_13 PF13166.1 gi|55377425|ref|YP_135275.1| - 2.5 6.4 23.8 0.049 12.0 5.5 2.5 2 1 1 3 3 3 0 AAA domain TPR_MLP1_2 PF07926.7 gi|55377425|ref|YP_135275.1| - 2.5 7.8 26.0 0.21 11.3 0.2 4.5 4 1 0 4 4 4 0 TPR/MLP1/MLP2-like protein Mnd1 PF03962.10 gi|55377425|ref|YP_135275.1| - 3 7.4 25.5 5.1 6.7 1.0 4.4 3 2 1 4 4 4 0 Mnd1 family Ferritin PF00210.19 gi|55377425|ref|YP_135275.1| - 4.2 7.1 10.2 0.68 9.6 1.2 2.7 1 1 0 2 2 2 0 Ferritin-like domain NPV_P10 PF05531.7 gi|55377425|ref|YP_135275.1| - 4.4 7.6 29.6 7.8 6.8 1.4 5.8 5 1 1 6 6 5 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|55377425|ref|YP_135275.1| - 4.7 6.0 11.1 2.6 6.9 0.6 3.3 2 1 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 BAR_2 PF10455.4 gi|55377425|ref|YP_135275.1| - 7.5 5.3 12.9 0.55 9.1 0.3 3.0 2 1 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking TMPIT PF07851.8 gi|55377425|ref|YP_135275.1| - 9 5.2 6.6 12 4.8 0.2 2.3 2 0 0 2 2 2 0 TMPIT-like protein TBPIP PF07106.8 gi|55377425|ref|YP_135275.1| - 9.1 5.8 16.7 5.9 6.3 0.0 4.5 2 1 4 6 6 6 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DAO PF01266.19 gi|55377426|ref|YP_135276.1| - 4.6e-64 216.5 0.6 6.5e-64 216.0 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55377426|ref|YP_135276.1| - 1.9e-09 37.6 0.2 0.0014 18.5 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|55377426|ref|YP_135276.1| - 4.3e-09 35.7 6.3 8e-08 31.5 4.4 2.1 1 1 0 1 1 1 1 FAD binding domain Fer2_BFD PF04324.10 gi|55377426|ref|YP_135276.1| - 2.1e-08 34.1 0.6 5.7e-08 32.6 0.4 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|55377426|ref|YP_135276.1| - 0.00014 21.0 7.9 0.00083 18.5 5.5 1.9 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|55377426|ref|YP_135276.1| - 0.00017 21.2 0.2 0.00034 20.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|55377426|ref|YP_135276.1| - 0.00028 20.0 8.4 0.00034 19.8 4.2 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|55377426|ref|YP_135276.1| - 0.00071 19.6 0.1 0.94 9.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55377426|ref|YP_135276.1| - 0.002 18.0 1.3 0.0086 16.0 0.4 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|55377426|ref|YP_135276.1| - 0.011 16.1 2.9 0.017 15.4 0.4 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55377426|ref|YP_135276.1| - 0.04 13.0 2.1 1 8.4 0.1 2.3 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|55377426|ref|YP_135276.1| - 0.042 13.6 3.1 3.8 7.2 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|55377426|ref|YP_135276.1| - 0.069 12.5 0.3 0.15 11.4 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|55377426|ref|YP_135276.1| - 0.13 12.6 0.6 0.31 11.5 0.4 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HI0933_like PF03486.9 gi|55377426|ref|YP_135276.1| - 0.15 10.5 1.3 0.33 9.3 0.2 1.9 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_10 PF13460.1 gi|55377426|ref|YP_135276.1| - 0.19 11.6 4.0 0.22 11.5 0.7 2.5 3 0 0 3 3 3 0 NADH(P)-binding GIDA PF01134.17 gi|55377426|ref|YP_135276.1| - 0.39 9.5 3.7 2.1 7.1 1.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|55377427|ref|YP_135277.1| - 6.8e-39 133.8 0.1 7.9e-39 133.6 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|55377427|ref|YP_135277.1| - 1.2e-07 30.9 0.8 0.0028 16.6 0.8 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|55377427|ref|YP_135277.1| - 5.1e-07 29.1 0.7 5.6e-06 25.6 0.6 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55377427|ref|YP_135277.1| - 3.7e-06 26.9 0.0 0.0013 18.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377427|ref|YP_135277.1| - 4.3e-05 22.5 0.4 4.3e-05 22.5 0.3 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|55377427|ref|YP_135277.1| - 8.8e-05 21.1 0.0 0.021 13.2 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|55377427|ref|YP_135277.1| - 0.0026 16.8 0.7 0.0052 15.8 0.5 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|55377427|ref|YP_135277.1| - 0.0039 17.5 0.5 0.0095 16.3 0.2 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55377427|ref|YP_135277.1| - 0.0063 16.5 0.9 0.015 15.2 0.6 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|55377427|ref|YP_135277.1| - 0.037 13.6 0.3 0.06 12.9 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|55377427|ref|YP_135277.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding CCG PF02754.11 gi|55377428|ref|YP_135278.1| - 1.2e-21 76.5 2.0 1.6e-10 40.8 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|55377428|ref|YP_135278.1| - 1.7e-07 31.1 6.9 1.7e-07 31.1 4.8 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|55377428|ref|YP_135278.1| - 2.2e-06 27.8 6.8 2.2e-06 27.8 4.7 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55377428|ref|YP_135278.1| - 9.5e-06 25.9 6.8 0.0048 17.2 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55377428|ref|YP_135278.1| - 7.4e-05 22.9 15.0 0.0012 19.0 7.9 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55377428|ref|YP_135278.1| - 0.00046 20.5 9.8 0.00046 20.5 6.8 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55377428|ref|YP_135278.1| - 0.011 15.4 19.7 0.016 14.9 9.5 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|55377428|ref|YP_135278.1| - 0.046 13.6 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_21 PF14697.1 gi|55377428|ref|YP_135278.1| - 0.15 11.9 12.8 0.42 10.4 0.7 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55377428|ref|YP_135278.1| - 0.75 10.5 18.8 0.37 11.5 7.7 3.8 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain HAMP PF00672.20 gi|55377430|ref|YP_135280.1| - 1.5e-05 25.0 3.2 1.5e-05 25.0 2.2 3.0 3 0 0 3 3 3 2 HAMP domain Yip1 PF04893.12 gi|55377430|ref|YP_135280.1| - 0.032 13.7 3.7 0.045 13.2 2.6 1.2 1 0 0 1 1 1 0 Yip1 domain MscS_TM PF12794.2 gi|55377430|ref|YP_135280.1| - 0.12 10.9 2.1 0.17 10.4 1.5 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 CopD PF05425.8 gi|55377430|ref|YP_135280.1| - 0.62 10.2 7.4 0.78 9.9 4.3 1.6 1 1 0 1 1 1 0 Copper resistance protein D DUF4307 PF14155.1 gi|55377430|ref|YP_135280.1| - 2.4 7.9 6.2 5.8 6.7 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) Bac_rhodopsin PF01036.13 gi|55377431|ref|YP_135281.1| - 2.7e-36 124.9 24.0 3.2e-36 124.7 16.6 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Usp PF00582.21 gi|55377432|ref|YP_135282.1| - 4.5e-18 65.7 0.5 5.2e-18 65.5 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family PEPcase PF00311.12 gi|55377433|ref|YP_135283.1| - 2.6e-240 799.4 0.5 3.3e-240 799.1 0.3 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|55377433|ref|YP_135283.1| - 0.00014 20.3 0.0 0.0003 19.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.3 gi|55377433|ref|YP_135283.1| - 0.021 14.3 0.3 0.09 12.2 0.2 2.1 1 0 0 1 1 1 0 Transcriptional activator TraM HTH_10 PF04967.7 gi|55377434|ref|YP_135284.1| - 5e-17 61.2 0.0 9.3e-17 60.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55377434|ref|YP_135284.1| - 0.009 15.6 0.1 0.032 13.8 0.0 2.0 2 0 0 2 2 2 1 MarR family UPF0122 PF04297.9 gi|55377434|ref|YP_135284.1| - 0.05 13.6 0.0 0.19 11.7 0.0 1.9 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.1 gi|55377434|ref|YP_135284.1| - 0.1 11.9 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55377434|ref|YP_135284.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Yip1 PF04893.12 gi|55377435|ref|YP_135285.1| - 7.9 5.9 13.4 9.5 5.6 7.9 1.9 1 1 1 2 2 2 0 Yip1 domain Peripla_BP_6 PF13458.1 gi|55377436|ref|YP_135286.1| - 4.6e-62 210.3 12.0 6.1e-62 209.9 8.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55377436|ref|YP_135286.1| - 1.4e-17 63.4 1.0 2.3e-17 62.8 0.7 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.22 gi|55377437|ref|YP_135287.1| - 3e-27 95.5 0.0 3.9e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|55377437|ref|YP_135287.1| - 1.5e-11 43.6 1.0 3.6e-11 42.4 0.4 1.9 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|55377437|ref|YP_135287.1| - 3e-08 33.9 0.4 0.0052 16.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55377437|ref|YP_135287.1| - 2.2e-05 23.8 0.0 2.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|55377437|ref|YP_135287.1| - 2.9e-05 24.5 0.0 3.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55377437|ref|YP_135287.1| - 4e-05 23.7 0.4 0.0021 18.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55377437|ref|YP_135287.1| - 0.0011 18.1 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|55377437|ref|YP_135287.1| - 0.0025 17.7 0.0 0.0047 16.8 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|55377437|ref|YP_135287.1| - 0.0032 16.9 0.1 0.006 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|55377437|ref|YP_135287.1| - 0.019 14.8 0.2 0.029 14.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|55377437|ref|YP_135287.1| - 0.05 13.5 0.8 0.12 12.3 0.6 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|55377437|ref|YP_135287.1| - 0.1 12.8 0.2 0.85 9.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|55377438|ref|YP_135288.1| - 9.1e-09 35.7 0.0 1.3e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377438|ref|YP_135288.1| - 0.00064 19.7 0.0 0.001 19.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF4261 PF14080.1 gi|55377438|ref|YP_135288.1| - 0.093 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4261) BPD_transp_2 PF02653.11 gi|55377439|ref|YP_135289.1| - 2.9e-36 124.8 40.8 3.4e-36 124.5 28.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF485 PF04341.7 gi|55377439|ref|YP_135289.1| - 0.012 15.3 0.5 0.012 15.3 0.3 4.6 4 2 3 7 7 7 0 Protein of unknown function, DUF485 BPD_transp_2 PF02653.11 gi|55377440|ref|YP_135290.1| - 2.7e-30 105.2 27.7 4.1e-30 104.6 19.2 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Abhydrolase_6 PF12697.2 gi|55377442|ref|YP_135292.1| - 5.3e-41 140.9 0.7 6.2e-41 140.7 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55377442|ref|YP_135292.1| - 6.9e-26 91.2 0.0 1.2e-16 61.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|55377442|ref|YP_135292.1| - 3.6e-22 78.6 0.2 7.1e-21 74.4 0.2 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|55377442|ref|YP_135292.1| - 4.1e-07 29.8 0.0 7.9e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Peptidase_S9 PF00326.16 gi|55377442|ref|YP_135292.1| - 0.00052 19.2 0.0 0.0036 16.5 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|55377442|ref|YP_135292.1| - 0.002 17.6 0.0 0.025 14.0 0.0 2.5 3 1 0 3 3 3 1 Phospholipase/Carboxylesterase Ndr PF03096.9 gi|55377442|ref|YP_135292.1| - 0.0089 14.5 0.0 0.013 13.9 0.0 1.2 1 0 0 1 1 1 1 Ndr family UPF0227 PF05728.7 gi|55377442|ref|YP_135292.1| - 0.0092 15.7 0.0 0.72 9.5 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) DUF915 PF06028.6 gi|55377442|ref|YP_135292.1| - 0.0096 15.0 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF915) Peptidase_S15 PF02129.13 gi|55377442|ref|YP_135292.1| - 0.012 15.0 0.1 0.075 12.4 0.1 2.0 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.8 gi|55377442|ref|YP_135292.1| - 0.016 14.6 0.0 0.032 13.6 0.0 1.4 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Hydrolase_4 PF12146.3 gi|55377442|ref|YP_135292.1| - 0.084 12.7 0.0 0.26 11.1 0.0 1.9 2 0 0 2 2 1 0 Putative lysophospholipase DLH PF01738.13 gi|55377442|ref|YP_135292.1| - 0.11 11.7 0.0 6.5 5.9 0.0 2.5 3 0 0 3 3 3 0 Dienelactone hydrolase family Thioesterase PF00975.15 gi|55377442|ref|YP_135292.1| - 0.17 12.0 0.6 0.27 11.4 0.4 1.4 1 1 0 1 1 1 0 Thioesterase domain AMP-binding PF00501.23 gi|55377443|ref|YP_135293.1| - 7.4e-84 281.5 0.1 8.8e-84 281.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55377443|ref|YP_135293.1| - 3.5e-13 50.3 0.1 7.6e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.1 gi|55377444|ref|YP_135294.1| - 7.3e-30 103.4 0.0 1.5e-13 50.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|55377444|ref|YP_135294.1| - 4.6e-29 100.3 0.0 9.7e-19 67.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|55377444|ref|YP_135294.1| - 5.3e-27 94.0 2.0 6.1e-13 48.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|55377444|ref|YP_135294.1| - 6e-16 58.2 0.0 4.6e-09 36.0 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|55377444|ref|YP_135294.1| - 1.5e-14 53.6 0.0 3.4e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55377444|ref|YP_135294.1| - 2.6e-10 40.1 0.4 2.6e-10 40.1 0.3 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|55377444|ref|YP_135294.1| - 2.4e-06 27.1 0.0 0.033 14.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|55377444|ref|YP_135294.1| - 0.00026 20.9 0.0 0.0006 19.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_10 PF13596.1 gi|55377444|ref|YP_135294.1| - 0.017 15.3 0.0 0.95 9.7 0.0 2.6 2 0 0 2 2 2 0 PAS domain MR_MLE_C PF13378.1 gi|55377445|ref|YP_135295.1| - 5.7e-28 97.1 0.0 1.7e-27 95.6 0.0 1.8 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55377445|ref|YP_135295.1| - 2.7e-14 53.1 0.0 6.2e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|55377445|ref|YP_135295.1| - 6.2e-12 45.8 0.2 6.6e-10 39.3 0.0 3.5 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|55377445|ref|YP_135295.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Pertussis_S1 PF02917.9 gi|55377445|ref|YP_135295.1| - 0.085 12.4 0.1 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Pertussis toxin, subunit 1 DUF4397 PF14344.1 gi|55377446|ref|YP_135296.1| - 8.1e-97 319.9 31.8 3.3e-41 140.4 3.3 4.1 2 2 2 4 4 4 4 Domain of unknown function (DUF4397) AlgF PF11182.3 gi|55377446|ref|YP_135296.1| - 1.9e-07 30.9 6.8 0.0031 17.2 0.6 3.3 2 2 1 3 3 3 2 Alginate O-acetyl transferase AlgF Y_Y_Y PF07495.8 gi|55377446|ref|YP_135296.1| - 5.2e-05 22.9 0.0 0.21 11.3 0.0 2.4 2 0 0 2 2 2 2 Y_Y_Y domain DUF2846 PF11008.3 gi|55377446|ref|YP_135296.1| - 0.018 14.8 0.0 31 4.4 0.0 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2846) Cytomega_UL20A PF05984.7 gi|55377446|ref|YP_135296.1| - 7.7 6.7 12.7 15 5.8 0.1 4.5 3 1 1 4 4 4 0 Cytomegalovirus UL20A protein HTH_20 PF12840.2 gi|55377447|ref|YP_135297.1| - 4.9e-12 45.4 0.0 7.4e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55377447|ref|YP_135297.1| - 3.3e-10 39.4 0.0 4.2e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|55377447|ref|YP_135297.1| - 2.2e-06 26.9 0.0 3.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|55377447|ref|YP_135297.1| - 6.6e-05 22.4 0.1 0.00011 21.7 0.1 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|55377447|ref|YP_135297.1| - 0.00017 21.2 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55377447|ref|YP_135297.1| - 0.00035 20.0 0.0 0.00054 19.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|55377447|ref|YP_135297.1| - 0.0046 17.0 0.0 0.0056 16.7 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_12 PF08461.5 gi|55377447|ref|YP_135297.1| - 0.0046 16.6 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|55377447|ref|YP_135297.1| - 0.0059 16.2 0.0 0.0078 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|55377447|ref|YP_135297.1| - 0.0059 16.4 0.0 0.012 15.4 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix Phage_rep_org_N PF09681.5 gi|55377447|ref|YP_135297.1| - 0.0096 15.4 0.0 0.0099 15.4 0.0 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|55377447|ref|YP_135297.1| - 0.054 13.1 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|55377447|ref|YP_135297.1| - 0.059 12.7 0.0 0.09 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|55377447|ref|YP_135297.1| - 0.067 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_10 PF04967.7 gi|55377447|ref|YP_135297.1| - 0.074 12.6 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|55377447|ref|YP_135297.1| - 0.14 12.2 0.0 0.27 11.4 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator Pho88 PF10032.4 gi|55377448|ref|YP_135298.1| - 0.12 11.6 0.5 0.18 11.0 0.0 1.5 1 1 0 1 1 1 0 Phosphate transport (Pho88) 5TM-5TMR_LYT PF07694.7 gi|55377448|ref|YP_135298.1| - 0.98 8.7 8.6 1 8.6 6.0 1.0 1 0 0 1 1 1 0 5TMR of 5TMR-LYT Phage_integrase PF00589.17 gi|55377449|ref|YP_135299.1| - 3.3e-10 39.9 0.0 1.7e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|55377449|ref|YP_135299.1| - 2.3e-05 24.4 0.7 6.8e-05 22.9 0.5 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain RHH_1 PF01402.16 gi|55377451|ref|YP_135301.1| - 8.4e-05 22.2 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HTH_45 PF14947.1 gi|55377452|ref|YP_135302.1| - 0.00058 19.6 0.0 0.00081 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|55377452|ref|YP_135302.1| - 0.0085 15.7 0.0 0.016 14.8 0.0 1.5 1 1 0 1 1 1 1 MarR family Mrr_N PF14338.1 gi|55377452|ref|YP_135302.1| - 0.012 15.6 0.0 0.036 14.1 0.0 1.7 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|55377452|ref|YP_135302.1| - 0.013 15.7 0.0 0.019 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain PIN PF01850.16 gi|55377454|ref|YP_135304.1| - 4e-05 23.9 0.0 4.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|55377454|ref|YP_135304.1| - 0.087 12.5 0.0 0.087 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) DUF217 PF02697.9 gi|55377455|ref|YP_135305.1| - 1e-07 32.0 4.2 1.2e-07 31.8 2.9 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF4162 PF13732.1 gi|55377455|ref|YP_135305.1| - 0.013 15.9 0.2 0.02 15.3 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) BLOC1_2 PF10046.4 gi|55377455|ref|YP_135305.1| - 0.019 15.1 1.4 0.031 14.4 0.7 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 THOC7 PF05615.8 gi|55377455|ref|YP_135305.1| - 0.021 15.1 1.5 0.028 14.6 1.1 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 Cupin_4 PF08007.7 gi|55377455|ref|YP_135305.1| - 0.036 13.3 0.6 0.037 13.2 0.4 1.0 1 0 0 1 1 1 0 Cupin superfamily protein Sipho_Gp157 PF05565.6 gi|55377455|ref|YP_135305.1| - 0.076 12.5 2.6 0.089 12.3 1.8 1.1 1 0 0 1 1 1 0 Siphovirus Gp157 RPW8 PF05659.6 gi|55377455|ref|YP_135305.1| - 0.086 12.3 0.9 0.093 12.2 0.6 1.0 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF305 PF03713.8 gi|55377455|ref|YP_135305.1| - 0.1 12.4 0.1 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF305) LdpA_C PF12617.3 gi|55377455|ref|YP_135305.1| - 0.13 11.5 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal HisKA_3 PF07730.8 gi|55377455|ref|YP_135305.1| - 0.14 12.5 1.5 0.23 11.8 0.3 1.8 1 1 1 2 2 2 0 Histidine kinase AlphaC_N PF08829.5 gi|55377455|ref|YP_135305.1| - 0.16 11.2 1.8 0.17 11.2 1.2 1.0 1 0 0 1 1 1 0 Alpha C protein N terminal Tmemb_cc2 PF10267.4 gi|55377455|ref|YP_135305.1| - 0.19 10.2 2.9 0.21 10.1 2.0 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein CorA PF01544.13 gi|55377455|ref|YP_135305.1| - 0.21 10.6 2.3 0.28 10.2 1.5 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein APG6 PF04111.7 gi|55377455|ref|YP_135305.1| - 0.28 10.1 2.7 0.3 10.0 1.9 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 RHH_1 PF01402.16 gi|55377455|ref|YP_135305.1| - 0.29 11.0 10.6 0.26 11.2 1.6 3.0 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family IncA PF04156.9 gi|55377455|ref|YP_135305.1| - 0.35 10.4 5.6 0.38 10.3 3.9 1.0 1 0 0 1 1 1 0 IncA protein DUF4164 PF13747.1 gi|55377455|ref|YP_135305.1| - 0.43 10.7 8.9 3.6 7.7 6.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) DUF2951 PF11166.3 gi|55377455|ref|YP_135305.1| - 1.4 8.8 4.7 2.3 8.1 3.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2951) DUF883 PF05957.8 gi|55377455|ref|YP_135305.1| - 1.4 9.3 3.7 2.5 8.5 0.9 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4349 PF14257.1 gi|55377455|ref|YP_135305.1| - 2.7 7.1 5.8 3 7.0 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Phage_integrase PF00589.17 gi|55377457|ref|YP_135306.1| - 6.9e-14 51.8 0.0 1.1e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|55377457|ref|YP_135306.1| - 0.0073 16.0 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Integrase HTH_23 PF13384.1 gi|55377457|ref|YP_135306.1| - 0.022 14.3 0.0 0.41 10.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Abi_2 PF07751.6 gi|55377456|ref|YP_135307.1| - 0.0015 18.7 0.1 0.0021 18.2 0.1 1.3 1 0 0 1 1 1 1 Abi-like protein Memo PF01875.12 gi|55377459|ref|YP_135309.1| - 0.0066 15.3 0.0 0.0087 14.9 0.0 1.1 1 0 0 1 1 1 1 Memo-like protein Tbf5 PF06331.7 gi|55377459|ref|YP_135309.1| - 0.12 12.1 0.0 2.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 Gram_pos_anchor PF00746.16 gi|55377462|ref|YP_135312.1| - 0.002 17.8 0.2 0.0043 16.8 0.1 1.6 1 0 0 1 1 1 1 Gram positive anchor Adeno_shaft PF00608.12 gi|55377464|ref|YP_135314.1| - 0.00066 19.1 3.7 0.0011 18.4 0.3 2.7 2 0 0 2 2 2 1 Adenoviral fibre protein (repeat/shaft region) RPAP1_N PF08621.5 gi|55377466|ref|YP_135316.1| - 0.15 11.6 1.9 0.17 11.5 1.3 1.1 1 0 0 1 1 1 0 RPAP1-like, N-terminal CotH PF08757.6 gi|55377470|ref|YP_135320.1| - 0.068 12.3 0.1 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 CotH protein Cse1 PF08506.5 gi|55377472|ref|YP_135322.1| - 0.093 11.2 0.1 0.093 11.2 0.1 1.0 1 0 0 1 1 1 0 Cse1 AAA_10 PF12846.2 gi|55377473|ref|YP_135323.1| - 4.3e-07 29.6 0.0 7.6e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain Zot PF05707.7 gi|55377473|ref|YP_135323.1| - 0.0008 18.9 0.1 0.0013 18.2 0.1 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) Packaging_FI PF14000.1 gi|55377476|ref|YP_135326.1| - 1.9 8.7 5.8 0.45 10.7 1.3 1.9 1 1 1 2 2 2 0 DNA packaging protein FI DUF605 PF04652.11 gi|55377477|ref|YP_135327.1| - 0.17 11.2 8.6 0.2 10.9 6.0 1.0 1 0 0 1 1 1 0 Vta1 like CDC45 PF02724.9 gi|55377477|ref|YP_135327.1| - 0.5 8.3 6.1 0.59 8.1 4.2 1.3 1 0 0 1 1 1 0 CDC45-like protein PLU-1 PF08429.6 gi|55377478|ref|YP_135328.1| - 0.091 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 PLU-1-like protein DZR PF12773.2 gi|55377479|ref|YP_135329.1| - 0.00027 20.6 1.3 0.00033 20.4 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.1 gi|55377479|ref|YP_135329.1| - 0.0061 16.8 0.5 0.0069 16.6 0.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|55377479|ref|YP_135329.1| - 0.015 15.2 1.2 0.033 14.1 0.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|55377479|ref|YP_135329.1| - 0.086 12.8 2.3 0.14 12.1 1.6 1.4 1 0 0 1 1 1 0 zinc-finger zf-LITAF-like PF10601.4 gi|55377479|ref|YP_135329.1| - 0.14 12.0 1.9 9.2 6.2 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|55377479|ref|YP_135329.1| - 0.23 11.2 1.3 0.4 10.5 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbons HypA PF01155.14 gi|55377479|ref|YP_135329.1| - 0.25 11.0 1.1 0.28 10.8 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|55377479|ref|YP_135329.1| - 0.4 10.3 4.0 1.9 8.2 0.7 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|55377479|ref|YP_135329.1| - 0.72 9.7 3.0 0.5 10.2 0.5 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|55377479|ref|YP_135329.1| - 0.75 9.8 3.6 7 6.7 0.0 2.0 2 0 0 2 2 2 0 DnaJ central domain Nudix_N_2 PF14803.1 gi|55377479|ref|YP_135329.1| - 0.75 9.5 3.9 3.4 7.4 2.6 2.0 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_6 PF14599.1 gi|55377479|ref|YP_135329.1| - 0.79 9.5 4.2 2.9 7.7 2.9 1.8 1 1 0 1 1 1 0 Zinc-ribbon ADK_lid PF05191.9 gi|55377479|ref|YP_135329.1| - 4.2 7.1 7.0 10 5.8 0.4 2.6 2 1 1 3 3 3 0 Adenylate kinase, active site lid MarR_2 PF12802.2 gi|55377480|ref|YP_135330.1| - 0.0044 16.6 0.0 0.0086 15.7 0.0 1.6 1 0 0 1 1 1 1 MarR family SYF2 PF08231.7 gi|55377480|ref|YP_135330.1| - 0.025 14.7 0.1 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 SYF2 splicing factor TrmB PF01978.14 gi|55377480|ref|YP_135330.1| - 0.039 13.6 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|55377480|ref|YP_135330.1| - 0.092 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding gp12-short_mid PF09089.5 gi|55377480|ref|YP_135330.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Phage short tail fibre protein gp12, middle domain Sigma70_r4_2 PF08281.7 gi|55377481|ref|YP_135331.1| - 0.00023 20.5 0.0 0.00039 19.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 SWIM PF04434.12 gi|55377481|ref|YP_135331.1| - 0.0021 17.4 0.4 0.0035 16.7 0.3 1.3 1 0 0 1 1 1 1 SWIM zinc finger Beta_helix PF13229.1 gi|55377482|ref|YP_135332.1| - 1.4e-12 47.6 18.2 2.1e-08 34.1 5.4 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|55377482|ref|YP_135332.1| - 5.5e-07 28.9 5.8 2.5e-05 23.5 0.2 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Phage_tail PF04630.7 gi|55377482|ref|YP_135332.1| - 0.018 14.1 0.8 0.043 12.9 0.6 1.7 1 0 0 1 1 1 0 Phage major tail protein Bac_rhamnosid_N PF08531.5 gi|55377482|ref|YP_135332.1| - 0.14 11.6 6.7 0.038 13.5 0.7 2.7 1 1 1 3 3 3 0 Alpha-L-rhamnosidase N-terminal domain Lipocalin_4 PF13648.1 gi|55377482|ref|YP_135332.1| - 2.1 9.0 19.8 5.3 7.7 1.4 4.3 2 1 1 3 3 3 0 Lipocalin-like domain ResIII PF04851.10 gi|55377483|ref|YP_135333.1| - 3.2e-26 92.2 0.0 3.5e-24 85.6 0.0 3.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|55377483|ref|YP_135333.1| - 2.3e-15 56.1 0.1 4.8e-15 55.1 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|55377483|ref|YP_135333.1| - 7.6e-12 45.0 0.0 2.8e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|55377483|ref|YP_135333.1| - 0.018 15.0 0.0 7.7 6.4 0.0 3.3 4 1 1 5 5 5 0 Helicase C-terminal domain DUF389 PF04087.9 gi|55377484|ref|YP_135334.1| - 1e-30 106.4 18.8 1e-30 106.4 13.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF389) BCLP PF12304.3 gi|55377484|ref|YP_135334.1| - 0.19 11.1 6.6 0.12 11.8 2.9 1.7 1 1 0 1 1 1 0 Beta-casein like protein DUF3082 PF11282.3 gi|55377484|ref|YP_135334.1| - 0.71 9.9 8.8 0.16 12.0 1.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3082) DUF790 PF05626.6 gi|55377485|ref|YP_135335.1| - 1.7e-77 260.5 0.0 8e-68 228.6 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF790) NTP_transf_5 PF14907.1 gi|55377486|ref|YP_135336.1| - 2e-59 200.9 0.0 2.5e-59 200.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Hpr_kinase_C PF07475.7 gi|55377487|ref|YP_135337.1| - 1.8e-07 30.6 0.1 3e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.1 gi|55377487|ref|YP_135337.1| - 0.0021 17.5 0.0 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain PEPCK_ATP PF01293.15 gi|55377487|ref|YP_135337.1| - 0.0058 15.2 0.0 0.0085 14.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_16 PF13191.1 gi|55377487|ref|YP_135337.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|55377487|ref|YP_135337.1| - 0.044 13.9 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55377487|ref|YP_135337.1| - 0.065 13.1 0.0 0.43 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|55377487|ref|YP_135337.1| - 0.072 12.1 0.0 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 KaiC DUF258 PF03193.11 gi|55377487|ref|YP_135337.1| - 0.073 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|55377487|ref|YP_135337.1| - 0.073 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|55377487|ref|YP_135337.1| - 0.16 11.7 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PqqD PF05402.7 gi|55377489|ref|YP_135339.1| - 1.3e-15 57.0 0.1 1.6e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) ABC_tran PF00005.22 gi|55377490|ref|YP_135340.1| - 1e-31 110.0 0.0 1.9e-31 109.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|55377490|ref|YP_135340.1| - 1.3e-07 31.2 5.0 2.3e-07 30.5 3.5 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|55377490|ref|YP_135340.1| - 2.4e-05 23.7 3.5 0.00022 20.5 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55377490|ref|YP_135340.1| - 0.0033 17.4 0.2 0.0064 16.4 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55377490|ref|YP_135340.1| - 0.0074 16.4 0.2 0.026 14.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55377490|ref|YP_135340.1| - 0.0086 16.8 0.0 0.022 15.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55377490|ref|YP_135340.1| - 0.0094 15.4 0.2 0.02 14.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|55377490|ref|YP_135340.1| - 0.018 14.6 0.1 0.064 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|55377490|ref|YP_135340.1| - 0.027 14.4 0.1 1.4 8.8 0.1 2.3 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|55377490|ref|YP_135340.1| - 0.034 13.3 0.0 0.067 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|55377490|ref|YP_135340.1| - 0.066 11.7 0.4 0.18 10.3 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PMP1_2 PF08114.6 gi|55377490|ref|YP_135340.1| - 0.081 12.4 0.3 0.081 12.4 0.2 2.0 2 0 0 2 2 1 0 ATPase proteolipid family DUF87 PF01935.12 gi|55377490|ref|YP_135340.1| - 0.11 12.3 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 Nol1_Nop2_Fmu_2 PF13636.1 gi|55377491|ref|YP_135341.1| - 1.9e-19 69.6 0.0 2.3e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis DUF3217 PF11506.3 gi|55377491|ref|YP_135341.1| - 0.089 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3217) Nol1_Nop2_Fmu PF01189.12 gi|55377492|ref|YP_135342.1| - 3.8e-49 167.5 0.0 4.4e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|55377492|ref|YP_135342.1| - 1.3e-05 24.8 0.0 1.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55377492|ref|YP_135342.1| - 2.5e-05 24.2 0.0 5.4e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377492|ref|YP_135342.1| - 6.5e-05 23.4 0.0 0.00013 22.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|55377492|ref|YP_135342.1| - 0.0036 17.3 0.0 0.006 16.5 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|55377492|ref|YP_135342.1| - 0.073 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAC2 PF09754.4 gi|55377493|ref|YP_135343.1| - 1.6e-44 152.3 0.0 2e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Peptidase_S49 PF01343.13 gi|55377494|ref|YP_135344.1| - 1e-40 139.0 0.0 1.4e-40 138.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|55377494|ref|YP_135344.1| - 0.012 15.2 0.1 0.56 9.8 0.0 2.2 2 0 0 2 2 2 0 Clp protease DUF3500 PF12006.3 gi|55377494|ref|YP_135344.1| - 0.053 12.4 0.0 0.072 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) Cytidylate_kin PF02224.13 gi|55377494|ref|YP_135344.1| - 0.097 12.1 0.1 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase DUF373 PF04123.8 gi|55377495|ref|YP_135345.1| - 3e-33 115.3 5.3 3.5e-33 115.0 3.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF1269 PF06897.7 gi|55377495|ref|YP_135345.1| - 0.74 9.8 5.6 2 8.4 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) ATP_bind_4 PF01902.12 gi|55377496|ref|YP_135346.1| - 4.2e-60 202.8 0.0 8.1e-60 201.8 0.0 1.4 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|55377496|ref|YP_135346.1| - 0.0011 18.5 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|55377496|ref|YP_135346.1| - 0.017 14.5 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|55377496|ref|YP_135346.1| - 0.069 12.4 0.0 0.099 11.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NTP_transferase PF00483.18 gi|55377497|ref|YP_135347.1| - 2.6e-38 131.7 0.0 3.3e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55377497|ref|YP_135347.1| - 9.7e-11 42.0 0.0 1.3e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|55377497|ref|YP_135347.1| - 0.15 11.6 0.1 1.1 8.9 0.1 2.4 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) NUDIX PF00293.23 gi|55377498|ref|YP_135348.1| - 3.2e-10 39.7 0.0 4.4e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Glyoxalase_4 PF13669.1 gi|55377499|ref|YP_135349.1| - 1.1e-14 54.2 0.0 1.4e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|55377499|ref|YP_135349.1| - 5.4e-08 32.9 0.2 6.1e-08 32.7 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|55377499|ref|YP_135349.1| - 5e-06 27.0 0.0 5.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|55377499|ref|YP_135349.1| - 4.9e-05 23.3 0.0 5.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MM_CoA_mutase PF01642.17 gi|55377501|ref|YP_135350.1| - 2.8e-206 685.6 4.0 3.5e-206 685.3 2.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase NPV_P10 PF05531.7 gi|55377501|ref|YP_135350.1| - 0.093 12.9 1.1 0.4 10.9 0.7 2.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FKBP_C PF00254.23 gi|55377500|ref|YP_135351.1| - 2e-24 85.3 0.2 2.8e-24 84.9 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|55377500|ref|YP_135351.1| - 0.013 15.1 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Preprotein translocase subunit DUF2187 PF09953.4 gi|55377500|ref|YP_135351.1| - 0.088 12.5 0.9 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) Acetyltransf_1 PF00583.19 gi|55377502|ref|YP_135352.1| - 6.3e-09 35.7 0.0 1.1e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55377502|ref|YP_135352.1| - 2.8e-05 24.1 0.0 4.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55377502|ref|YP_135352.1| - 0.00015 21.8 0.0 0.00022 21.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55377502|ref|YP_135352.1| - 0.0026 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|55377502|ref|YP_135352.1| - 0.0042 16.9 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|55377502|ref|YP_135352.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377502|ref|YP_135352.1| - 0.11 12.2 0.0 0.34 10.7 0.0 1.8 2 1 0 2 2 2 0 FR47-like protein HTH_10 PF04967.7 gi|55377503|ref|YP_135353.1| - 7e-18 63.9 0.1 2.7e-17 62.0 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain UPF0122 PF04297.9 gi|55377503|ref|YP_135353.1| - 0.0064 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|55377503|ref|YP_135353.1| - 0.039 13.2 0.1 0.1 11.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|55377503|ref|YP_135353.1| - 0.062 12.9 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|55377503|ref|YP_135353.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.22 gi|55377504|ref|YP_135354.1| - 3.4e-28 98.6 0.0 5e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377504|ref|YP_135354.1| - 2.2e-07 31.1 0.1 8.5e-05 22.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55377504|ref|YP_135354.1| - 0.0044 16.2 0.4 0.31 10.2 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arylesterase PF01731.15 gi|55377504|ref|YP_135354.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Arylesterase AAA_23 PF13476.1 gi|55377504|ref|YP_135354.1| - 0.027 14.7 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|55377504|ref|YP_135354.1| - 0.12 11.9 0.1 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|55377504|ref|YP_135354.1| - 0.13 11.8 0.1 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|55377505|ref|YP_135355.1| - 2.5e-26 92.5 0.0 3.3e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377505|ref|YP_135355.1| - 5.9e-07 29.7 0.8 0.00044 20.3 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|55377505|ref|YP_135355.1| - 3.5e-06 27.4 0.9 6.1e-06 26.7 0.6 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|55377505|ref|YP_135355.1| - 1.8e-05 23.4 0.0 2.3e-05 23.0 0.0 1.0 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|55377505|ref|YP_135355.1| - 0.00011 21.4 0.0 0.00021 20.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|55377505|ref|YP_135355.1| - 0.0017 17.8 0.0 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|55377505|ref|YP_135355.1| - 0.0023 17.1 0.0 0.0042 16.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|55377505|ref|YP_135355.1| - 0.0027 17.5 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55377505|ref|YP_135355.1| - 0.003 18.3 0.1 0.005 17.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55377505|ref|YP_135355.1| - 0.0051 16.9 0.0 0.24 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|55377505|ref|YP_135355.1| - 0.0053 16.7 0.0 0.0076 16.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|55377505|ref|YP_135355.1| - 0.0064 15.9 0.4 0.065 12.6 0.1 2.2 1 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|55377505|ref|YP_135355.1| - 0.0083 15.3 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|55377505|ref|YP_135355.1| - 0.011 15.6 0.0 0.31 10.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|55377505|ref|YP_135355.1| - 0.012 15.2 0.0 0.027 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|55377505|ref|YP_135355.1| - 0.013 14.8 0.1 0.045 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|55377505|ref|YP_135355.1| - 0.022 14.4 0.5 0.084 12.5 0.0 2.2 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|55377505|ref|YP_135355.1| - 0.041 14.3 0.0 0.067 13.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein BetR PF08667.5 gi|55377505|ref|YP_135355.1| - 0.045 13.6 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 BetR domain UPF0079 PF02367.12 gi|55377505|ref|YP_135355.1| - 0.054 13.1 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|55377505|ref|YP_135355.1| - 0.054 12.3 0.0 0.092 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|55377505|ref|YP_135355.1| - 0.069 13.1 0.9 0.99 9.3 0.0 2.7 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|55377505|ref|YP_135355.1| - 0.07 13.0 0.5 0.12 12.3 0.1 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|55377505|ref|YP_135355.1| - 0.072 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PIF1 PF05970.9 gi|55377505|ref|YP_135355.1| - 0.081 11.8 0.0 0.15 10.9 0.0 1.4 1 1 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.1 gi|55377505|ref|YP_135355.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|55377505|ref|YP_135355.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI APS_kinase PF01583.15 gi|55377505|ref|YP_135355.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.17 gi|55377505|ref|YP_135355.1| - 0.17 10.7 0.3 1.3 7.8 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain BPD_transp_2 PF02653.11 gi|55377506|ref|YP_135356.1| - 1.8e-30 105.8 31.9 3.2e-30 104.9 22.1 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55377507|ref|YP_135357.1| - 1.7e-29 102.6 39.9 2.1e-29 102.3 27.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|55377508|ref|YP_135358.1| - 1.4e-41 143.0 7.8 1.8e-41 142.6 5.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55377508|ref|YP_135358.1| - 4.4e-16 58.5 1.1 3.2e-15 55.7 0.7 2.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|55377508|ref|YP_135358.1| - 4.5e-06 25.6 0.1 1.2e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region adh_short PF00106.20 gi|55377509|ref|YP_135359.1| - 8.1e-22 77.9 6.2 1.1e-21 77.4 4.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55377509|ref|YP_135359.1| - 4.8e-09 36.3 0.1 5.9e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55377509|ref|YP_135359.1| - 1.5e-06 28.0 1.9 1.8e-06 27.7 1.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55377509|ref|YP_135359.1| - 0.0048 16.3 0.3 0.0059 16.0 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|55377509|ref|YP_135359.1| - 0.035 13.9 0.3 0.078 12.7 0.2 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_18 PF12847.2 gi|55377509|ref|YP_135359.1| - 0.043 14.3 0.3 0.085 13.4 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain AMP-binding PF00501.23 gi|55377510|ref|YP_135360.1| - 6.9e-80 268.4 0.0 8.4e-80 268.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55377510|ref|YP_135360.1| - 1.7e-16 60.9 0.1 3.6e-16 59.8 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|55377511|ref|YP_135361.1| - 1e-35 123.1 56.9 1.1e-23 83.4 17.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|55377511|ref|YP_135361.1| - 0.025 14.3 1.4 3.3 7.5 0.0 2.9 3 0 0 3 3 3 0 MFS_1 like family zf-ribbon_3 PF13248.1 gi|55377512|ref|YP_135362.1| - 5.1e-05 22.3 4.4 0.008 15.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|55377512|ref|YP_135362.1| - 7.1e-05 22.5 1.8 7.1e-05 22.5 1.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55377512|ref|YP_135362.1| - 9.2e-05 21.8 5.1 0.00015 21.0 3.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|55377512|ref|YP_135362.1| - 0.00015 21.2 1.8 0.00017 21.0 1.3 1.2 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|55377512|ref|YP_135362.1| - 0.0002 21.0 1.6 0.0005 19.7 1.1 1.6 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|55377512|ref|YP_135362.1| - 0.00023 20.8 2.3 0.00025 20.7 1.6 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|55377512|ref|YP_135362.1| - 0.0022 17.6 1.6 0.0023 17.5 1.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|55377512|ref|YP_135362.1| - 0.0032 17.1 2.2 0.0038 16.8 1.6 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|55377512|ref|YP_135362.1| - 0.0032 16.8 4.3 0.01 15.2 3.0 1.8 1 1 0 1 1 1 1 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|55377512|ref|YP_135362.1| - 0.0033 16.8 2.0 0.0041 16.5 1.4 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|55377512|ref|YP_135362.1| - 0.0047 16.5 1.1 0.15 11.7 0.8 2.1 1 1 0 1 1 1 1 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|55377512|ref|YP_135362.1| - 0.0057 16.4 1.7 0.0063 16.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e Rubredoxin PF00301.15 gi|55377512|ref|YP_135362.1| - 0.012 15.4 0.4 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Rubredoxin zf-HIT PF04438.11 gi|55377512|ref|YP_135362.1| - 0.012 15.1 3.4 0.085 12.5 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger FYVE PF01363.16 gi|55377512|ref|YP_135362.1| - 0.013 15.3 0.4 0.013 15.3 0.3 1.0 1 0 0 1 1 1 0 FYVE zinc finger zf-HYPF PF07503.7 gi|55377512|ref|YP_135362.1| - 0.015 14.6 3.6 0.13 11.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger zinc-ribbons_6 PF07191.7 gi|55377512|ref|YP_135362.1| - 0.018 14.8 1.5 0.02 14.6 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|55377512|ref|YP_135362.1| - 0.023 13.9 4.8 0.047 13.0 3.3 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|55377512|ref|YP_135362.1| - 0.047 13.8 0.6 0.047 13.8 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS91 PF14319.1 gi|55377512|ref|YP_135362.1| - 0.053 13.0 2.0 0.055 12.9 1.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|55377512|ref|YP_135362.1| - 0.054 13.3 3.2 0.089 12.6 2.1 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|55377512|ref|YP_135362.1| - 0.058 13.0 0.8 0.055 13.1 0.6 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sgf11 PF08209.6 gi|55377512|ref|YP_135362.1| - 0.085 12.1 3.9 0.51 9.6 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-IS66 PF13005.2 gi|55377512|ref|YP_135362.1| - 0.091 12.7 2.2 0.24 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF35_N PF12172.3 gi|55377512|ref|YP_135362.1| - 0.12 12.2 1.7 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Spt4 PF06093.8 gi|55377512|ref|YP_135362.1| - 0.16 11.8 2.2 0.37 10.7 1.6 1.6 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-Mss51 PF13824.1 gi|55377512|ref|YP_135362.1| - 0.18 11.6 4.7 0.58 10.0 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNHCP PF12647.2 gi|55377512|ref|YP_135362.1| - 0.2 11.4 1.6 0.21 11.4 1.1 1.2 1 0 0 1 1 1 0 RNHCP domain GFA PF04828.9 gi|55377512|ref|YP_135362.1| - 0.28 11.1 2.9 0.48 10.4 0.5 1.8 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|55377512|ref|YP_135362.1| - 0.34 10.5 2.7 3.8 7.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|55377512|ref|YP_135362.1| - 0.34 10.6 2.7 4 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|55377512|ref|YP_135362.1| - 0.37 10.4 0.3 0.37 10.4 0.2 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Auto_anti-p27 PF06677.7 gi|55377512|ref|YP_135362.1| - 0.4 10.4 2.3 1 9.1 1.8 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-LSD1 PF06943.7 gi|55377512|ref|YP_135362.1| - 0.46 10.1 2.4 12 5.6 0.1 2.1 2 0 0 2 2 2 0 LSD1 zinc finger DUF329 PF03884.9 gi|55377512|ref|YP_135362.1| - 0.46 10.0 2.1 1.1 8.8 1.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Zn-ribbon_8 PF09723.5 gi|55377512|ref|YP_135362.1| - 0.47 10.4 3.5 0.54 10.2 0.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|55377512|ref|YP_135362.1| - 0.54 9.9 3.2 21 4.9 0.1 2.2 1 1 1 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|55377512|ref|YP_135362.1| - 0.55 10.5 2.6 3.3 8.0 1.9 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF2296 PF10058.4 gi|55377512|ref|YP_135362.1| - 0.56 9.9 3.1 1.5 8.5 0.0 2.2 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L32p PF01783.18 gi|55377512|ref|YP_135362.1| - 0.61 10.2 3.1 1.4 9.1 2.1 1.6 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|55377512|ref|YP_135362.1| - 0.69 10.0 3.5 0.84 9.7 0.2 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1272 PF06906.6 gi|55377512|ref|YP_135362.1| - 0.74 9.7 4.6 0.54 10.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-C2H2_3 PF13878.1 gi|55377512|ref|YP_135362.1| - 0.88 9.1 3.9 2.3 7.8 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Prim_Zn_Ribbon PF08273.7 gi|55377512|ref|YP_135362.1| - 0.9 9.6 7.5 13 5.9 5.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-C2H2_4 PF13894.1 gi|55377512|ref|YP_135362.1| - 1.1 9.7 3.3 7.8 7.0 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-LITAF-like PF10601.4 gi|55377512|ref|YP_135362.1| - 1.2 8.9 4.0 1.3 8.9 0.1 1.7 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-TFIIB PF13453.1 gi|55377512|ref|YP_135362.1| - 1.4 8.1 5.0 5.1 6.3 3.5 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-piccolo PF05715.8 gi|55377512|ref|YP_135362.1| - 1.9 8.5 5.4 15 5.6 3.7 1.9 1 1 0 1 1 1 0 Piccolo Zn-finger TFIIS_C PF01096.13 gi|55377512|ref|YP_135362.1| - 2.5 7.8 4.4 4.7 6.9 0.3 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|55377512|ref|YP_135362.1| - 3.8 7.1 6.5 2.4 7.7 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PAPS_reduct PF01507.14 gi|55377513|ref|YP_135363.1| - 4.8e-17 62.3 0.0 5.9e-13 49.0 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|55377513|ref|YP_135363.1| - 0.00085 18.7 0.0 0.0058 16.0 0.0 2.0 2 0 0 2 2 2 1 ATP-binding region PP-binding_2 PF14573.1 gi|55377513|ref|YP_135363.1| - 0.11 12.5 0.2 0.26 11.3 0.1 1.6 1 0 0 1 1 1 0 Acyl-carrier DUF95 PF01944.12 gi|55377514|ref|YP_135364.1| - 1.1e-27 96.8 13.0 1.3e-27 96.5 9.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 Fer2 PF00111.22 gi|55377516|ref|YP_135366.1| - 2.4e-10 40.0 2.2 3.1e-10 39.6 1.6 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|55377516|ref|YP_135366.1| - 0.013 15.2 0.1 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.9 gi|55377517|ref|YP_135367.1| - 3.1e-15 55.7 1.4 4.4e-11 42.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|55377517|ref|YP_135367.1| - 1.9e-10 40.1 7.9 2.4e-07 29.9 0.2 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|55377517|ref|YP_135367.1| - 3e-10 39.5 8.0 3e-05 23.1 1.1 2.7 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|55377517|ref|YP_135367.1| - 6.6e-09 35.2 4.0 0.00022 20.3 0.2 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|55377517|ref|YP_135367.1| - 2.5e-08 33.4 9.5 7.6e-05 21.9 2.0 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|55377517|ref|YP_135367.1| - 3.3e-07 30.6 5.3 8.8e-05 22.8 0.4 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377517|ref|YP_135367.1| - 1.1e-06 27.7 0.3 2e-06 26.9 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|55377517|ref|YP_135367.1| - 1.7e-06 27.9 5.1 1.2e-05 25.1 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55377517|ref|YP_135367.1| - 6.5e-06 24.8 0.3 0.00014 20.4 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|55377517|ref|YP_135367.1| - 6.9e-06 25.3 1.8 6e-05 22.2 0.6 2.4 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|55377517|ref|YP_135367.1| - 1.8e-05 24.6 1.9 2e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377517|ref|YP_135367.1| - 2.7e-05 24.3 0.0 5.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|55377517|ref|YP_135367.1| - 0.00021 21.0 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|55377517|ref|YP_135367.1| - 0.00095 18.1 2.0 0.055 12.3 0.3 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.11 gi|55377517|ref|YP_135367.1| - 0.003 17.0 0.0 0.0072 15.7 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|55377517|ref|YP_135367.1| - 0.017 14.7 0.7 0.038 13.5 0.5 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|55377517|ref|YP_135367.1| - 0.044 13.8 0.1 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ThiF PF00899.16 gi|55377517|ref|YP_135367.1| - 0.065 13.0 0.4 0.13 12.0 0.3 1.5 1 0 0 1 1 1 0 ThiF family RPAP2_Rtr1 PF04181.8 gi|55377517|ref|YP_135367.1| - 0.14 12.2 0.0 0.94 9.6 0.0 2.0 2 0 0 2 2 2 0 Rtr1/RPAP2 family DUF1628 PF07790.6 gi|55377518|ref|YP_135368.1| - 9.6e-22 77.5 0.3 1.9e-21 76.6 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) FtsH_ext PF06480.10 gi|55377518|ref|YP_135368.1| - 0.035 14.2 0.1 0.049 13.8 0.1 1.2 1 0 0 1 1 1 0 FtsH Extracellular Nup_retrotrp_bd PF10599.4 gi|55377518|ref|YP_135368.1| - 0.058 14.0 2.0 0.084 13.5 1.4 1.2 1 0 0 1 1 1 0 Retro-transposon transporting motif CBM_X2 PF03442.9 gi|55377518|ref|YP_135368.1| - 0.096 12.5 0.3 22 4.9 0.0 2.9 2 1 0 2 2 2 0 Carbohydrate binding domain X2 Peptidase_M20 PF01546.23 gi|55377519|ref|YP_135369.1| - 1.2e-21 77.1 18.6 3.6e-21 75.5 12.9 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|55377519|ref|YP_135369.1| - 1.6e-12 47.1 0.3 3.8e-12 45.9 0.2 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.17 gi|55377520|ref|YP_135370.1| - 1.2e-13 50.7 0.0 1.5e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|55377521|ref|YP_135371.1| - 1.9e-17 63.1 0.2 2.6e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain RseC_MucC PF04246.7 gi|55377522|ref|YP_135372.1| - 4.4 6.8 11.8 1.1 8.7 5.0 2.0 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC TrmB PF01978.14 gi|55377524|ref|YP_135374.1| - 0.021 14.5 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MacB_PCD PF12704.2 gi|55377525|ref|YP_135375.1| - 6.6e-32 110.9 3.2 6.6e-32 110.9 2.2 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|55377525|ref|YP_135375.1| - 1.5e-26 92.5 6.4 1.5e-26 92.5 4.4 2.0 2 0 0 2 2 2 1 FtsX-like permease family DUF456 PF04306.8 gi|55377525|ref|YP_135375.1| - 7.6 6.5 20.8 6.2 6.8 10.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF456) ATPase_gene1 PF09527.5 gi|55377525|ref|YP_135375.1| - 8.8 6.2 21.7 0.3 10.9 6.7 3.2 3 1 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) ABC_tran PF00005.22 gi|55377526|ref|YP_135376.1| - 3.7e-30 105.0 0.0 6.1e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377526|ref|YP_135376.1| - 4.3e-09 36.7 0.5 0.00012 22.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55377526|ref|YP_135376.1| - 0.0023 17.2 0.1 0.061 12.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|55377526|ref|YP_135376.1| - 0.0058 16.5 1.0 0.079 12.8 0.2 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|55377526|ref|YP_135376.1| - 0.011 15.2 0.3 0.018 14.5 0.2 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|55377526|ref|YP_135376.1| - 0.013 14.9 0.4 0.024 14.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55377526|ref|YP_135376.1| - 0.026 13.6 0.1 0.04 13.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|55377526|ref|YP_135376.1| - 0.052 13.4 1.7 0.4 10.5 1.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|55377526|ref|YP_135376.1| - 0.059 13.1 0.3 2.6 7.8 0.0 2.6 2 1 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|55377526|ref|YP_135376.1| - 0.075 13.8 0.4 0.14 13.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|55377526|ref|YP_135376.1| - 0.31 10.9 2.4 1.1 9.2 1.7 2.1 1 1 0 1 1 1 0 AAA ATPase domain DUF4367 PF14285.1 gi|55377527|ref|YP_135377.1| - 0.0022 17.3 0.3 0.0022 17.3 0.2 2.5 2 2 0 2 2 2 1 Domain of unknown function (DUF4367) LolA PF03548.10 gi|55377527|ref|YP_135377.1| - 0.0023 17.5 0.2 0.0061 16.1 0.0 1.8 2 0 0 2 2 2 1 Outer membrane lipoprotein carrier protein LolA DUF3284 PF11687.3 gi|55377527|ref|YP_135377.1| - 0.03 14.0 0.5 0.23 11.1 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3284) TOBE_2 PF08402.5 gi|55377527|ref|YP_135377.1| - 0.11 12.4 1.2 0.37 10.8 0.1 2.5 3 0 0 3 3 3 0 TOBE domain Mut7-C PF01927.11 gi|55377528|ref|YP_135378.1| - 3.4e-43 147.1 0.0 3.8e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain FhuF_C PF11575.3 gi|55377528|ref|YP_135378.1| - 0.15 11.6 1.4 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 FhuF 2Fe-2S C-terminal domain DUF35_N PF12172.3 gi|55377528|ref|YP_135378.1| - 4.8 7.2 6.5 2.7 8.0 0.9 2.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_pol_B_thumb PF14791.1 gi|55377529|ref|YP_135379.1| - 4e-25 87.2 0.0 8.9e-25 86.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|55377529|ref|YP_135379.1| - 2e-15 56.6 3.1 1.2e-13 50.9 0.1 3.6 3 1 1 4 4 4 1 Helix-hairpin-helix domain PHP PF02811.14 gi|55377529|ref|YP_135379.1| - 2.6e-13 50.1 0.0 1.4e-12 47.7 0.0 2.3 1 1 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|55377529|ref|YP_135379.1| - 9.5e-12 44.9 14.8 9.7e-11 41.6 0.3 4.5 5 0 0 5 5 5 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|55377529|ref|YP_135379.1| - 5.9e-05 22.8 4.9 0.22 11.4 0.1 4.4 3 1 2 5 5 5 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|55377529|ref|YP_135379.1| - 0.00088 19.3 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|55377529|ref|YP_135379.1| - 0.015 14.9 0.1 0.099 12.3 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif CHAT PF12770.2 gi|55377530|ref|YP_135380.1| - 0.032 13.3 0.0 0.1 11.6 0.0 1.5 1 1 0 1 1 1 0 CHAT domain Response_reg PF00072.19 gi|55377532|ref|YP_135382.1| - 2.6e-19 69.2 0.1 3.8e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|55377532|ref|YP_135382.1| - 4.3e-08 33.4 0.0 1.3e-07 31.9 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|55377532|ref|YP_135382.1| - 3.3e-06 27.0 0.0 1.4e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|55377532|ref|YP_135382.1| - 4.8e-06 26.3 0.0 1.2e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.10 gi|55377532|ref|YP_135382.1| - 8.1e-06 25.8 0.1 1.7e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|55377532|ref|YP_135382.1| - 0.0022 18.0 0.0 0.0056 16.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|55377532|ref|YP_135382.1| - 0.013 15.3 0.0 0.033 14.0 0.0 1.7 1 0 0 1 1 1 0 PAS domain DUF769 PF05590.6 gi|55377532|ref|YP_135382.1| - 0.023 13.9 0.1 0.071 12.2 0.0 1.5 1 1 0 2 2 2 0 Xylella fastidiosa protein of unknown function (DUF769) Rhomboid PF01694.17 gi|55377533|ref|YP_135383.1| - 2.7e-23 82.6 14.2 2.7e-23 82.6 9.8 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|55377533|ref|YP_135383.1| - 1.2e-13 50.6 4.9 1.7e-13 50.2 3.4 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|55377533|ref|YP_135383.1| - 0.00046 20.4 0.4 0.0011 19.1 0.3 1.7 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) Endonuclease_5 PF04493.9 gi|55377534|ref|YP_135384.1| - 1.6e-48 164.8 0.0 2.2e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|55377534|ref|YP_135384.1| - 0.079 12.0 0.3 0.27 10.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF99 UvrC_HhH_N PF08459.6 gi|55377534|ref|YP_135384.1| - 0.15 11.5 0.1 0.47 9.9 0.0 1.8 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal adh_short PF00106.20 gi|55377535|ref|YP_135385.1| - 8.8e-34 116.8 0.1 1.1e-33 116.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55377535|ref|YP_135385.1| - 6e-18 65.4 0.0 7.9e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55377535|ref|YP_135385.1| - 7.8e-14 51.7 0.1 1.3e-13 50.9 0.0 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55377535|ref|YP_135385.1| - 2e-07 30.6 0.0 6.5e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55377535|ref|YP_135385.1| - 8.1e-06 25.9 0.1 1.1e-05 25.5 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|55377535|ref|YP_135385.1| - 0.00016 20.6 0.0 0.00064 18.6 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.5 gi|55377535|ref|YP_135385.1| - 0.00018 20.7 0.0 0.00022 20.4 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.3 gi|55377535|ref|YP_135385.1| - 0.00057 19.6 0.2 0.0014 18.3 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|55377535|ref|YP_135385.1| - 0.031 13.5 0.0 0.052 12.7 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family ArsA_ATPase PF02374.10 gi|55377536|ref|YP_135386.1| - 6.3e-78 261.8 0.0 7.4e-51 173.0 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|55377536|ref|YP_135386.1| - 1.4e-11 44.1 0.2 2e-09 37.1 0.1 2.2 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55377536|ref|YP_135386.1| - 0.00012 22.0 0.3 0.0029 17.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|55377536|ref|YP_135386.1| - 0.025 13.9 1.6 0.038 13.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|55377536|ref|YP_135386.1| - 0.036 13.2 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.12 gi|55377536|ref|YP_135386.1| - 0.04 13.3 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|55377536|ref|YP_135386.1| - 0.069 12.5 0.3 0.73 9.2 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|55377536|ref|YP_135386.1| - 0.079 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein KaiC PF06745.8 gi|55377536|ref|YP_135386.1| - 0.17 10.9 0.0 0.35 9.9 0.0 1.5 1 0 0 1 1 1 0 KaiC Helicase_C_2 PF13307.1 gi|55377537|ref|YP_135387.1| - 1.4e-24 86.9 0.0 2.8e-24 85.9 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|55377537|ref|YP_135387.1| - 2.8e-16 59.4 0.0 8.1e-13 48.1 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 DEAD PF00270.24 gi|55377537|ref|YP_135387.1| - 5e-10 39.1 0.0 0.00085 18.8 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|55377537|ref|YP_135387.1| - 6.4e-08 32.6 0.0 0.00016 21.6 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|55377537|ref|YP_135387.1| - 3.1e-06 26.5 0.4 0.00056 19.2 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.1 gi|55377537|ref|YP_135387.1| - 7.4e-05 22.4 0.6 0.00026 20.6 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|55377537|ref|YP_135387.1| - 0.00066 19.3 0.5 0.053 13.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|55377537|ref|YP_135387.1| - 0.011 14.7 0.2 0.63 8.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|55377537|ref|YP_135387.1| - 0.021 14.9 1.1 10 6.3 0.0 2.8 2 1 0 2 2 2 0 AAA domain DUF1253 PF06862.7 gi|55377537|ref|YP_135387.1| - 0.18 10.1 0.0 0.29 9.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) TBP PF00352.16 gi|55377538|ref|YP_135388.1| - 7.7e-65 214.2 0.0 1.7e-31 107.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|55377538|ref|YP_135388.1| - 0.0081 16.1 0.0 2.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|55377538|ref|YP_135388.1| - 0.037 13.3 0.6 8.8 5.7 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|55377538|ref|YP_135388.1| - 0.087 12.8 0.0 0.28 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) DUF3904 PF13044.1 gi|55377538|ref|YP_135388.1| - 0.18 10.2 0.1 0.24 9.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3904) TRAM PF01938.15 gi|55377539|ref|YP_135389.1| - 9.6e-15 54.1 1.1 2e-14 53.0 0.8 1.6 1 0 0 1 1 1 1 TRAM domain UPF0150 PF03681.10 gi|55377539|ref|YP_135389.1| - 0.01 15.4 0.1 0.3 10.7 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) CoA_transf_3 PF02515.12 gi|55377540|ref|YP_135390.1| - 1.1e-62 210.7 0.0 1.4e-62 210.3 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.14 gi|55377541|ref|YP_135391.1| - 1.9e-18 66.4 0.8 2.8e-18 65.9 0.5 1.3 1 1 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|55377541|ref|YP_135391.1| - 0.004 16.9 0.8 0.0059 16.3 0.5 1.5 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Peripla_BP_6 PF13458.1 gi|55377541|ref|YP_135391.1| - 0.0068 15.8 0.4 0.12 11.6 0.1 1.8 1 1 1 2 2 2 1 Periplasmic binding protein SNAPc_SNAP43 PF09808.4 gi|55377541|ref|YP_135391.1| - 0.016 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Flg_hook PF02120.11 gi|55377541|ref|YP_135391.1| - 0.019 14.5 0.5 1.6 8.4 0.0 3.0 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Met_asp_mut_E PF06368.6 gi|55377542|ref|YP_135392.1| - 5.4e-185 614.7 0.0 6.2e-185 614.5 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.6 gi|55377543|ref|YP_135393.1| - 4.8e-116 385.9 0.0 6.4e-116 385.5 0.0 1.1 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|55377543|ref|YP_135393.1| - 3.7e-63 212.0 1.4 3.7e-63 212.0 1.0 1.9 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|55377543|ref|YP_135393.1| - 1.5e-08 34.5 0.2 4.5e-08 33.0 0.1 1.9 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF4334 PF14232.1 gi|55377543|ref|YP_135393.1| - 0.027 14.0 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4334) MaoC_dehydratas PF01575.14 gi|55377544|ref|YP_135394.1| - 1.3e-05 24.5 0.0 0.00011 21.6 0.0 2.0 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|55377544|ref|YP_135394.1| - 4.9e-05 23.1 0.1 0.0034 17.1 0.0 2.3 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|55377544|ref|YP_135394.1| - 0.00033 21.1 0.1 0.0048 17.3 0.0 2.2 1 1 0 2 2 2 1 Thioesterase-like superfamily Imm1 PF14430.1 gi|55377544|ref|YP_135394.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Immunity protein Imm1 HpcH_HpaI PF03328.9 gi|55377545|ref|YP_135395.1| - 9.6e-17 60.6 0.1 6.6e-16 57.8 0.0 2.2 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.17 gi|55377545|ref|YP_135395.1| - 2.9e-05 22.3 0.0 0.00029 19.0 0.0 2.0 2 0 0 2 2 2 1 Malate synthase C-C_Bond_Lyase PF15617.1 gi|55377545|ref|YP_135395.1| - 0.0001 21.2 0.0 0.29 9.8 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Aminotran_1_2 PF00155.16 gi|55377546|ref|YP_135396.1| - 7.5e-47 160.0 0.0 9.1e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|55377546|ref|YP_135396.1| - 9.7e-09 34.4 0.0 2.2e-08 33.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|55377546|ref|YP_135396.1| - 4e-06 26.1 0.0 5.7e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|55377546|ref|YP_135396.1| - 3.4e-05 22.3 0.0 4.5e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|55377546|ref|YP_135396.1| - 5e-05 22.5 0.2 7.9e-05 21.8 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|55377546|ref|YP_135396.1| - 0.0068 15.1 0.0 0.02 13.5 0.0 1.7 2 0 0 2 2 2 1 Allinase PGPGW PF09656.5 gi|55377547|ref|YP_135397.1| - 2.6 7.3 9.5 65 2.9 6.4 2.1 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) CinA PF02464.12 gi|55377548|ref|YP_135398.1| - 2.7e-59 199.0 0.9 3.1e-59 198.8 0.6 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.6 gi|55377548|ref|YP_135398.1| - 0.014 14.8 0.1 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) DUF457 PF04307.9 gi|55377549|ref|YP_135399.1| - 1.8e-17 63.0 6.7 2.7e-17 62.5 4.6 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|55377549|ref|YP_135399.1| - 3.3e-06 26.8 0.4 4.4e-06 26.4 0.3 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.1 gi|55377550|ref|YP_135400.1| - 4.5e-07 29.2 0.1 1.2e-06 27.8 0.1 1.8 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.8 gi|55377551|ref|YP_135401.1| - 1.7e-24 85.3 0.1 2.8e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|55377551|ref|YP_135401.1| - 3e-07 29.8 2.1 4.6e-07 29.3 0.1 2.3 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|55377551|ref|YP_135401.1| - 0.0032 17.6 0.0 0.04 14.1 0.0 2.2 1 1 0 1 1 1 1 Transcription termination factor nusG Saccharop_dh_N PF04455.7 gi|55377551|ref|YP_135401.1| - 0.068 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region MCPsignal PF00015.16 gi|55377553|ref|YP_135403.1| - 1.9e-48 164.8 79.8 1.2e-46 158.9 25.8 5.4 3 2 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55377553|ref|YP_135403.1| - 2.3e-09 37.2 0.4 2.3e-09 37.2 0.3 6.3 7 1 1 8 8 7 2 HAMP domain Laminin_II PF06009.7 gi|55377553|ref|YP_135403.1| - 0.00021 21.0 39.9 0.06 13.1 0.2 5.3 3 2 2 5 5 5 3 Laminin Domain II Laminin_I PF06008.9 gi|55377553|ref|YP_135403.1| - 0.011 15.0 45.5 0.0066 15.8 13.5 4.5 1 1 3 5 5 5 0 Laminin Domain I EzrA PF06160.7 gi|55377553|ref|YP_135403.1| - 0.021 12.9 36.4 0.12 10.4 6.6 3.5 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA DUF869 PF05911.6 gi|55377553|ref|YP_135403.1| - 0.032 12.4 40.8 0.5 8.5 9.4 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Fib_alpha PF08702.5 gi|55377553|ref|YP_135403.1| - 0.043 13.9 27.2 0.29 11.2 4.1 4.5 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|55377553|ref|YP_135403.1| - 0.058 12.0 33.7 0.077 11.6 5.5 3.5 1 1 1 3 3 3 0 Spc7 kinetochore protein DUF948 PF06103.6 gi|55377553|ref|YP_135403.1| - 0.089 12.6 41.5 0.04 13.7 1.2 8.1 5 2 4 9 9 9 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|55377553|ref|YP_135403.1| - 0.18 12.0 31.1 2.8 8.2 0.9 6.2 3 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|55377553|ref|YP_135403.1| - 0.34 11.0 35.7 3.1 8.0 1.9 6.0 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMP_2 PF06791.8 gi|55377553|ref|YP_135403.1| - 0.38 10.3 38.4 1.2 8.7 8.0 4.4 1 1 2 3 3 3 0 Prophage tail length tape measure protein Seryl_tRNA_N PF02403.17 gi|55377553|ref|YP_135403.1| - 1.2 9.1 36.6 0.48 10.4 1.8 6.1 3 2 2 6 6 6 0 Seryl-tRNA synthetase N-terminal domain RPW8 PF05659.6 gi|55377553|ref|YP_135403.1| - 1.9 8.0 9.2 19 4.8 0.0 4.6 3 2 2 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 AKNA PF12443.3 gi|55377553|ref|YP_135403.1| - 2 8.4 7.0 0.61 10.1 0.4 3.0 2 1 0 2 2 2 0 AT-hook-containing transcription factor APG17 PF04108.7 gi|55377553|ref|YP_135403.1| - 2.8 6.6 32.8 20 3.8 14.4 3.9 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF1664 PF07889.7 gi|55377553|ref|YP_135403.1| - 4.2 7.1 33.5 0.54 10.0 1.8 6.1 3 2 4 7 7 7 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|55377553|ref|YP_135403.1| - 5.6 6.8 31.1 1.1 9.0 0.3 6.1 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 LXG PF04740.7 gi|55377553|ref|YP_135403.1| - 6.5 6.4 36.8 1 9.1 7.2 4.8 3 2 0 3 3 3 0 LXG domain of WXG superfamily Prominin PF05478.6 gi|55377553|ref|YP_135403.1| - 9.7 3.5 28.4 1.3 6.4 11.5 2.2 1 1 1 2 2 2 0 Prominin Peripla_BP_6 PF13458.1 gi|55377554|ref|YP_135404.1| - 5e-35 121.4 11.6 5.9e-35 121.2 8.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|55377554|ref|YP_135404.1| - 2.4e-26 92.3 0.1 3.3e-26 91.9 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|55377554|ref|YP_135404.1| - 2e-07 30.1 0.0 0.00012 21.0 0.0 2.9 3 0 0 3 3 3 1 Periplasmic binding protein domain HEM4 PF02602.10 gi|55377554|ref|YP_135404.1| - 0.014 14.6 0.0 0.029 13.6 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Tubulin PF00091.20 gi|55377555|ref|YP_135405.1| - 4e-35 121.6 0.7 1.1e-34 120.1 0.4 1.8 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|55377555|ref|YP_135405.1| - 3.8e-34 116.6 1.8 1e-33 115.2 0.3 2.5 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|55377555|ref|YP_135405.1| - 0.19 11.5 2.3 0.34 10.7 1.2 1.9 1 1 0 1 1 1 0 ThiF family tRNA_deacylase PF04414.7 gi|55377556|ref|YP_135406.1| - 9.7e-65 217.6 0.0 1.5e-64 217.0 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Na_Ca_ex PF01699.19 gi|55377557|ref|YP_135407.1| - 1.6e-15 56.9 15.8 9.9e-09 34.9 0.3 2.8 2 1 1 3 3 3 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.6 gi|55377558|ref|YP_135408.1| - 4.2e-26 90.8 0.0 1e-25 89.5 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|55377558|ref|YP_135408.1| - 1.6e-15 57.4 0.0 2.3e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|55377558|ref|YP_135408.1| - 2.9e-05 23.9 0.0 0.00029 20.7 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|55377558|ref|YP_135408.1| - 8.6e-05 21.6 0.5 0.00012 21.1 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|55377558|ref|YP_135408.1| - 9.4e-05 22.4 1.4 9.4e-05 22.4 1.0 1.8 2 0 0 2 2 2 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|55377558|ref|YP_135408.1| - 0.00017 20.8 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|55377558|ref|YP_135408.1| - 0.0002 20.7 0.1 0.00039 19.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|55377558|ref|YP_135408.1| - 0.00042 20.7 0.1 0.00085 19.7 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.19 gi|55377558|ref|YP_135408.1| - 0.01 14.7 3.2 0.019 13.8 2.2 1.4 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.13 gi|55377558|ref|YP_135408.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|55377558|ref|YP_135408.1| - 0.015 14.9 0.1 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|55377558|ref|YP_135408.1| - 0.08 12.3 0.1 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|55377558|ref|YP_135408.1| - 0.17 10.7 0.4 0.21 10.3 0.3 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A HHH_5 PF14520.1 gi|55377559|ref|YP_135409.1| - 3.6e-07 30.2 1.2 6.1e-07 29.5 0.8 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|55377559|ref|YP_135409.1| - 0.00019 21.3 0.0 0.0011 18.9 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|55377559|ref|YP_135409.1| - 0.00022 21.0 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|55377559|ref|YP_135409.1| - 0.0044 16.9 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|55377559|ref|YP_135409.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|55377559|ref|YP_135409.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 TfoX C-terminal domain PPP4R2 PF09184.6 gi|55377559|ref|YP_135409.1| - 3.1 7.2 17.4 4.2 6.8 12.0 1.2 1 0 0 1 1 1 0 PPP4R2 BUD22 PF09073.5 gi|55377559|ref|YP_135409.1| - 3.4 6.6 21.0 4.5 6.2 14.5 1.1 1 0 0 1 1 1 0 BUD22 Macoilin PF09726.4 gi|55377559|ref|YP_135409.1| - 3.9 5.6 6.9 4.1 5.5 4.8 1.0 1 0 0 1 1 1 0 Transmembrane protein Ebola_NP PF05505.7 gi|55377559|ref|YP_135409.1| - 4 5.3 12.3 4.7 5.1 8.5 1.0 1 0 0 1 1 1 0 Ebola nucleoprotein Hamartin PF04388.7 gi|55377559|ref|YP_135409.1| - 4.3 5.8 8.0 4.6 5.8 5.5 1.0 1 0 0 1 1 1 0 Hamartin protein Daxx PF03344.10 gi|55377559|ref|YP_135409.1| - 6.3 5.1 14.1 7.1 4.9 9.8 1.1 1 0 0 1 1 1 0 Daxx Family Dicty_REP PF05086.7 gi|55377559|ref|YP_135409.1| - 6.8 4.2 7.5 7.4 4.1 5.2 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Chorismate_bind PF00425.13 gi|55377560|ref|YP_135410.1| - 3.3e-101 337.9 0.0 5.3e-101 337.2 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|55377560|ref|YP_135410.1| - 2.4e-15 56.7 0.1 1.2e-14 54.5 0.0 2.2 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|55377561|ref|YP_135411.1| - 6.2e-43 146.4 0.0 3.1e-41 140.9 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55377561|ref|YP_135411.1| - 5.7e-05 22.6 0.2 0.00016 21.2 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|55377562|ref|YP_135412.1| - 1.2e-42 145.9 0.0 1.6e-42 145.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rieske PF00355.21 gi|55377563|ref|YP_135413.1| - 8.5e-09 34.8 0.0 1.2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Zn_Tnp_IS91 PF14319.1 gi|55377564|ref|YP_135414.1| - 0.056 12.9 0.3 0.065 12.7 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain HTH_20 PF12840.2 gi|55377564|ref|YP_135414.1| - 0.071 12.9 0.1 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|55377564|ref|YP_135414.1| - 0.3 11.0 6.6 0.93 9.4 4.5 1.9 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|55377564|ref|YP_135414.1| - 0.44 10.2 2.9 0.87 9.2 1.6 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.5 gi|55377564|ref|YP_135414.1| - 1.2 9.7 5.5 0.54 10.8 1.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-trcl PF13451.1 gi|55377564|ref|YP_135414.1| - 8.9 6.0 9.0 8.4 6.1 4.3 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Usp PF00582.21 gi|55377565|ref|YP_135415.1| - 1.7e-63 212.9 7.5 3.4e-34 118.0 0.4 2.0 2 0 0 2 2 2 2 Universal stress protein family ETF PF01012.16 gi|55377565|ref|YP_135415.1| - 0.012 15.3 2.8 2.5 7.7 0.1 2.8 2 2 0 2 2 2 0 Electron transfer flavoprotein domain Lactamase_B_4 PF13691.1 gi|55377565|ref|YP_135415.1| - 0.023 14.1 0.0 5 6.6 0.0 2.4 2 0 0 2 2 2 0 tRNase Z endonuclease FAD_binding_6 PF00970.19 gi|55377566|ref|YP_135416.1| - 4.5e-12 45.9 0.0 6.1e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.14 gi|55377567|ref|YP_135417.1| - 4.2e-62 209.6 0.5 6.3e-62 209.0 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|55377567|ref|YP_135417.1| - 3.9e-40 137.5 0.1 7.9e-40 136.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|55377567|ref|YP_135417.1| - 3.2e-06 26.7 0.2 5.8e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Urotensin_II PF02083.10 gi|55377567|ref|YP_135417.1| - 0.14 11.5 0.4 0.28 10.5 0.3 1.5 1 0 0 1 1 1 0 Urotensin II TPP_enzyme_C PF02775.16 gi|55377568|ref|YP_135418.1| - 5.9e-32 110.3 0.4 8.6e-32 109.8 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|55377568|ref|YP_135418.1| - 3.3e-17 62.1 0.0 7.9e-17 60.9 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Methyltransf_11 PF08241.7 gi|55377569|ref|YP_135419.1| - 1.9e-20 73.1 0.0 3.5e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55377569|ref|YP_135419.1| - 2.5e-16 59.6 0.0 3.4e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377569|ref|YP_135419.1| - 6.9e-14 52.0 0.0 1.4e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55377569|ref|YP_135419.1| - 3.6e-12 46.5 0.0 6.3e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377569|ref|YP_135419.1| - 4e-11 43.4 0.0 8.2e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55377569|ref|YP_135419.1| - 1.4e-10 41.1 0.0 8.1e-10 38.6 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55377569|ref|YP_135419.1| - 1.2e-09 37.6 0.0 1.8e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|55377569|ref|YP_135419.1| - 7.7e-09 35.6 0.4 1.7e-08 34.5 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|55377569|ref|YP_135419.1| - 1.7e-05 24.4 0.0 2.2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|55377569|ref|YP_135419.1| - 8.8e-05 21.7 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|55377569|ref|YP_135419.1| - 0.001 18.7 0.1 0.0019 17.8 0.1 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase FAD_binding_7 PF03441.9 gi|55377570|ref|YP_135420.1| - 1.5e-80 270.4 1.3 1.9e-80 270.0 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|55377570|ref|YP_135420.1| - 2.3e-30 105.4 0.2 3.8e-30 104.8 0.1 1.3 1 0 0 1 1 1 1 DNA photolyase TOBE PF03459.12 gi|55377571|ref|YP_135421.1| - 7.6e-18 64.3 0.6 8.3e-18 64.2 0.4 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.5 gi|55377571|ref|YP_135421.1| - 0.0011 18.8 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 TOBE domain TOBE_3 PF12857.2 gi|55377571|ref|YP_135421.1| - 0.025 14.4 0.1 0.087 12.6 0.0 1.8 1 1 0 1 1 1 0 TOBE-like domain Apocytochr_F_C PF01333.14 gi|55377571|ref|YP_135421.1| - 0.04 13.7 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Apocytochrome F, C-terminal DUF35 PF01796.12 gi|55377571|ref|YP_135421.1| - 0.13 12.5 0.9 0.7 10.1 0.6 1.9 1 1 0 1 1 1 0 DUF35 OB-fold domain DUF457 PF04307.9 gi|55377572|ref|YP_135422.1| - 2.9e-10 39.6 8.6 4.4e-10 39.1 5.9 1.2 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) FtsX PF02687.16 gi|55377572|ref|YP_135422.1| - 0.36 10.5 2.5 2.5 7.8 0.2 2.1 1 1 1 2 2 2 0 FtsX-like permease family DUF4131 PF13567.1 gi|55377573|ref|YP_135423.1| - 0.0067 15.8 0.2 0.02 14.3 0.0 1.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) DAO PF01266.19 gi|55377575|ref|YP_135425.1| - 1.3e-13 50.6 0.0 3.1e-06 26.3 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|55377575|ref|YP_135425.1| - 1.8e-10 40.3 0.0 1.2e-09 37.6 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|55377575|ref|YP_135425.1| - 6.7e-08 31.5 0.0 0.00032 19.4 0.0 3.0 2 1 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|55377575|ref|YP_135425.1| - 8.5e-07 29.0 0.0 2e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55377575|ref|YP_135425.1| - 1e-06 28.1 0.2 2.7e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55377575|ref|YP_135425.1| - 2e-06 26.9 0.0 1.4e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|55377575|ref|YP_135425.1| - 2.8e-06 26.0 0.0 0.00034 19.2 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|55377575|ref|YP_135425.1| - 2.3e-05 23.6 0.0 0.00016 20.8 0.0 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|55377575|ref|YP_135425.1| - 0.00017 21.5 0.0 0.00044 20.2 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|55377575|ref|YP_135425.1| - 0.00028 19.8 0.0 0.14 10.9 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|55377575|ref|YP_135425.1| - 0.00076 18.6 0.1 0.057 12.4 0.0 2.7 2 1 0 2 2 2 1 FAD binding domain CPSase_L_chain PF00289.17 gi|55377575|ref|YP_135425.1| - 0.0099 15.9 0.0 0.04 14.0 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Pyr_redox_3 PF13738.1 gi|55377575|ref|YP_135425.1| - 0.038 14.0 0.0 0.081 12.9 0.0 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|55377575|ref|YP_135425.1| - 0.075 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|55377575|ref|YP_135425.1| - 0.11 12.5 0.1 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding NAD_kinase PF01513.16 gi|55377576|ref|YP_135426.1| - 1.5e-10 40.3 0.4 2e-10 39.9 0.3 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Peripla_BP_1 PF00532.16 gi|55377576|ref|YP_135426.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF202 PF02656.10 gi|55377577|ref|YP_135427.1| - 0.022 14.9 0.2 2.9 8.1 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) EBP PF05241.7 gi|55377578|ref|YP_135428.1| - 0.15 11.1 3.0 0.1 11.6 1.4 1.3 1 1 0 1 1 1 0 Emopamil binding protein DUF2723 PF11028.3 gi|55377579|ref|YP_135429.1| - 0.011 15.1 1.1 0.014 14.9 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) DUF350 PF03994.9 gi|55377579|ref|YP_135429.1| - 0.015 14.9 0.3 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) DUF1772 PF08592.6 gi|55377579|ref|YP_135429.1| - 0.099 12.3 0.5 0.12 12.0 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF1072 PF06380.6 gi|55377579|ref|YP_135429.1| - 1.6 8.4 4.3 9.6 5.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) MHYT PF03707.11 gi|55377579|ref|YP_135429.1| - 2.7 8.1 5.0 1.1 9.4 1.4 1.8 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DUF2613 PF11021.3 gi|55377579|ref|YP_135429.1| - 4.8 6.9 7.3 12 5.6 4.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2613) Cytochrom_B_C PF00032.12 gi|55377580|ref|YP_135430.1| - 9.3e-08 32.2 1.3 1.4e-07 31.6 0.1 1.9 2 1 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD Cytochrom_B_N_2 PF13631.1 gi|55377581|ref|YP_135431.1| - 1.5e-39 135.4 16.6 1.9e-39 135.1 9.3 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|55377581|ref|YP_135431.1| - 0.6 10.6 0.0 0.6 10.6 0.0 4.0 3 1 0 3 3 3 0 PepSY-associated TM helix Rieske PF00355.21 gi|55377582|ref|YP_135432.1| - 3.7e-07 29.6 0.1 7.3e-07 28.6 0.1 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF1673 PF07895.6 gi|55377583|ref|YP_135433.1| - 0.0056 16.2 0.0 0.0065 16.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) DUF3951 PF13131.1 gi|55377583|ref|YP_135433.1| - 5.6 6.8 8.7 0.097 12.4 0.8 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3951) Copper-bind PF00127.15 gi|55377584|ref|YP_135434.1| - 1.2e-13 51.0 0.1 3e-13 49.8 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|55377584|ref|YP_135434.1| - 2.3 8.4 14.6 0.35 10.9 6.3 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Collagen PF01391.13 gi|55377585|ref|YP_135435.1| - 0.35 10.4 8.0 0.044 13.3 2.5 1.7 2 0 0 2 2 2 0 Collagen triple helix repeat (20 copies) 7TM_GPCR_Srh PF10318.4 gi|55377586|ref|YP_135436.1| - 0.088 11.6 1.2 0.14 10.9 0.8 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh Usp PF00582.21 gi|55377587|ref|YP_135437.1| - 3.1e-34 118.1 0.6 4.7e-34 117.5 0.4 1.3 1 0 0 1 1 1 1 Universal stress protein family HhH-GPD PF00730.20 gi|55377588|ref|YP_135438.1| - 7.2e-19 68.0 0.0 9.5e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|55377588|ref|YP_135438.1| - 1.2e-08 34.2 1.1 3.1e-08 32.8 0.0 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|55377588|ref|YP_135438.1| - 0.0019 18.3 2.8 0.0031 17.6 1.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III IMS_HHH PF11798.3 gi|55377588|ref|YP_135438.1| - 0.016 15.1 0.0 0.043 13.8 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif HHH_5 PF14520.1 gi|55377588|ref|YP_135438.1| - 0.059 13.5 0.1 0.62 10.2 0.0 2.1 1 1 1 2 2 2 0 Helix-hairpin-helix domain Acetyltransf_3 PF13302.1 gi|55377589|ref|YP_135439.1| - 4.3e-18 65.8 0.0 4.9e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55377589|ref|YP_135439.1| - 4.7e-09 36.3 0.0 5.7e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55377589|ref|YP_135439.1| - 7.7e-08 32.2 0.0 1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|55377589|ref|YP_135439.1| - 0.00011 22.1 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377589|ref|YP_135439.1| - 0.0071 16.0 0.0 0.0097 15.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|55377590|ref|YP_135440.1| - 9.4e-30 103.6 0.0 1.1e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55377590|ref|YP_135440.1| - 2.5e-17 63.2 0.0 2.8e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55377590|ref|YP_135440.1| - 4.1e-11 42.9 0.0 8.3e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55377590|ref|YP_135440.1| - 2.7e-10 40.1 0.1 4e-10 39.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55377590|ref|YP_135440.1| - 0.0092 16.1 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377590|ref|YP_135440.1| - 0.022 14.5 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein AhpC-TSA PF00578.16 gi|55377591|ref|YP_135441.1| - 2.7e-16 59.3 0.0 3.2e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55377591|ref|YP_135441.1| - 6.1e-07 29.0 0.0 6.8e-07 28.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin TraB PF01963.12 gi|55377591|ref|YP_135441.1| - 0.13 11.6 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 TraB family PRC PF05239.11 gi|55377592|ref|YP_135442.1| - 3.4e-10 39.6 0.7 4.3e-10 39.3 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain TrkA_N PF02254.13 gi|55377593|ref|YP_135443.1| - 1.4e-20 73.4 1.7 3.5e-20 72.1 1.1 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|55377593|ref|YP_135443.1| - 3.9e-12 46.0 0.5 1e-11 44.6 0.4 1.7 1 0 0 1 1 1 1 DHH family F420_oxidored PF03807.12 gi|55377593|ref|YP_135443.1| - 7.8e-08 32.6 0.6 4e-07 30.3 0.1 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|55377593|ref|YP_135443.1| - 2e-06 27.3 0.0 5.7e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|55377593|ref|YP_135443.1| - 4.6e-06 26.7 3.0 4.7e-06 26.7 0.7 2.1 2 0 0 2 2 2 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|55377593|ref|YP_135443.1| - 1.6e-05 24.0 0.5 3.1e-05 23.1 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|55377593|ref|YP_135443.1| - 2.5e-05 24.0 0.1 5.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|55377593|ref|YP_135443.1| - 2.6e-05 24.1 0.0 5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|55377593|ref|YP_135443.1| - 2.7e-05 23.6 0.3 5.8e-05 22.5 0.2 1.6 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|55377593|ref|YP_135443.1| - 3.7e-05 23.9 0.4 0.00011 22.4 0.2 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|55377593|ref|YP_135443.1| - 0.00093 18.6 0.1 0.0027 17.1 0.1 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|55377593|ref|YP_135443.1| - 0.0018 17.9 0.2 0.0049 16.5 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DHHA1 PF02272.14 gi|55377593|ref|YP_135443.1| - 0.0026 17.4 0.0 0.0076 15.9 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain adh_short PF00106.20 gi|55377593|ref|YP_135443.1| - 0.0048 16.8 1.3 0.0048 16.8 0.9 3.3 3 1 1 4 4 3 1 short chain dehydrogenase Shikimate_DH PF01488.15 gi|55377593|ref|YP_135443.1| - 0.0054 16.8 0.1 0.014 15.4 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|55377593|ref|YP_135443.1| - 0.0055 16.5 1.4 0.023 14.5 0.2 2.4 2 0 0 2 2 2 1 ThiF family XdhC_C PF13478.1 gi|55377593|ref|YP_135443.1| - 0.0057 16.9 0.5 0.05 13.9 0.1 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|55377593|ref|YP_135443.1| - 0.016 14.3 0.0 0.04 13.0 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|55377593|ref|YP_135443.1| - 0.063 12.8 0.1 0.64 9.5 0.0 2.7 3 0 0 3 3 3 0 Zinc-binding dehydrogenase DAO PF01266.19 gi|55377593|ref|YP_135443.1| - 0.069 12.0 0.8 0.14 10.9 0.2 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55377593|ref|YP_135443.1| - 0.077 13.0 0.5 0.21 11.6 0.1 1.9 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain Ldh_1_N PF00056.18 gi|55377593|ref|YP_135443.1| - 0.085 12.6 0.5 0.22 11.3 0.3 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|55377593|ref|YP_135443.1| - 0.09 11.4 0.3 0.15 10.7 0.2 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.5 gi|55377593|ref|YP_135443.1| - 0.18 11.4 3.0 0.21 11.2 0.5 2.4 2 1 0 2 2 2 0 KR domain Acetyltransf_1 PF00583.19 gi|55377594|ref|YP_135444.1| - 7.2e-15 54.7 0.0 9.9e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55377594|ref|YP_135444.1| - 1.4e-11 44.5 0.0 1.6e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55377594|ref|YP_135444.1| - 1.4e-11 44.3 0.0 1.8e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55377594|ref|YP_135444.1| - 1.1e-06 28.5 0.1 1.7e-06 27.8 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55377594|ref|YP_135444.1| - 0.00012 21.8 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_5 PF13444.1 gi|55377594|ref|YP_135444.1| - 0.00027 21.4 0.1 0.0011 19.5 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|55377594|ref|YP_135444.1| - 0.012 15.2 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377594|ref|YP_135444.1| - 0.027 14.1 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein GNAT_acetyltr_2 PF13718.1 gi|55377594|ref|YP_135444.1| - 0.094 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 IMPDH PF00478.20 gi|55377595|ref|YP_135445.1| - 1.9e-130 434.8 8.4 2.2e-130 434.6 5.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|55377595|ref|YP_135445.1| - 3.1e-28 97.2 4.7 1.2e-14 53.8 0.3 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|55377595|ref|YP_135445.1| - 6.5e-15 55.1 5.7 1.2e-06 27.9 2.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|55377595|ref|YP_135445.1| - 1.2e-09 37.5 3.0 1.2e-09 37.5 2.1 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|55377595|ref|YP_135445.1| - 5.1e-05 22.4 1.4 5.1e-05 22.4 0.9 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|55377595|ref|YP_135445.1| - 0.00011 21.3 2.4 0.00012 21.1 0.8 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|55377595|ref|YP_135445.1| - 0.00021 20.6 2.6 0.00096 18.4 0.1 2.3 1 1 1 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|55377595|ref|YP_135445.1| - 0.00028 19.9 4.5 0.00028 19.9 3.1 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase Dus PF01207.12 gi|55377595|ref|YP_135445.1| - 0.001 17.9 0.1 0.001 17.9 0.1 2.3 3 0 0 3 3 3 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|55377595|ref|YP_135445.1| - 0.0069 15.6 0.4 0.0069 15.6 0.3 2.6 2 0 0 2 2 2 1 PcrB family Trypsin_2 PF13365.1 gi|55377595|ref|YP_135445.1| - 0.015 15.2 0.1 0.14 12.1 0.0 2.4 2 0 0 2 2 2 0 Trypsin-like peptidase domain HET-s_218-289 PF11558.3 gi|55377595|ref|YP_135445.1| - 0.061 13.3 0.6 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Het-s 218-289 IGPS PF00218.16 gi|55377595|ref|YP_135445.1| - 0.082 11.9 0.9 1.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase N-glycanase_N PF09112.5 gi|55377595|ref|YP_135445.1| - 0.16 11.3 0.0 0.5 9.7 0.0 1.8 2 0 0 2 2 2 0 Peptide-N-glycosidase F, N terminal DZR PF12773.2 gi|55377597|ref|YP_135447.1| - 0.03 14.1 0.4 0.045 13.5 0.3 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55377597|ref|YP_135447.1| - 0.055 12.7 1.0 0.25 10.6 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55377597|ref|YP_135447.1| - 0.072 13.0 3.6 0.92 9.5 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|55377597|ref|YP_135447.1| - 0.44 10.0 0.2 0.44 10.0 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.6 gi|55377597|ref|YP_135447.1| - 7.9 6.6 6.6 4.4 7.4 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pro_CA PF00484.14 gi|55377598|ref|YP_135448.1| - 3.5e-27 95.3 0.0 5.2e-27 94.7 0.0 1.3 1 1 0 1 1 1 1 Carbonic anhydrase CM_2 PF01817.16 gi|55377599|ref|YP_135449.1| - 2e-17 63.0 4.4 2.3e-17 62.8 3.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF853 PF05872.7 gi|55377599|ref|YP_135449.1| - 0.033 12.5 0.2 0.037 12.3 0.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) DUF4404 PF14357.1 gi|55377599|ref|YP_135449.1| - 0.043 14.2 1.3 0.06 13.7 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Cytidylate_kin2 PF13189.1 gi|55377599|ref|YP_135449.1| - 0.051 13.4 0.4 0.059 13.2 0.3 1.1 1 0 0 1 1 1 0 Cytidylate kinase-like family GHMP_kinases_N PF00288.21 gi|55377600|ref|YP_135450.1| - 1.5e-11 44.1 0.9 3.6e-11 42.9 0.6 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain TrkA_N PF02254.13 gi|55377601|ref|YP_135451.1| - 1e-28 99.6 1.3 2.1e-28 98.6 0.9 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|55377601|ref|YP_135451.1| - 4.5e-17 61.3 0.9 1.9e-16 59.3 0.1 2.3 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.12 gi|55377601|ref|YP_135451.1| - 4.4e-06 27.0 0.2 1.2e-05 25.6 0.1 1.8 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|55377601|ref|YP_135451.1| - 0.00016 22.0 0.1 0.00023 21.5 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|55377601|ref|YP_135451.1| - 0.00027 20.0 0.1 0.00037 19.6 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|55377601|ref|YP_135451.1| - 0.00032 20.7 0.4 0.00047 20.2 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|55377601|ref|YP_135451.1| - 0.00078 19.1 0.2 0.0011 18.6 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|55377601|ref|YP_135451.1| - 0.0008 19.6 0.2 0.0014 18.8 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|55377601|ref|YP_135451.1| - 0.0014 18.0 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|55377601|ref|YP_135451.1| - 0.0023 17.3 0.8 0.2 11.0 0.1 2.2 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|55377601|ref|YP_135451.1| - 0.0027 18.0 0.4 0.013 15.8 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.21 gi|55377601|ref|YP_135451.1| - 0.0034 16.9 0.0 0.11 11.9 0.2 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Peripla_BP_3 PF13377.1 gi|55377601|ref|YP_135451.1| - 0.0037 17.2 0.2 0.0055 16.7 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Shikimate_DH PF01488.15 gi|55377601|ref|YP_135451.1| - 0.0041 17.2 0.1 0.0082 16.2 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|55377601|ref|YP_135451.1| - 0.0065 16.3 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|55377601|ref|YP_135451.1| - 0.0077 16.7 0.5 0.016 15.6 0.3 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|55377601|ref|YP_135451.1| - 0.027 13.6 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|55377601|ref|YP_135451.1| - 0.058 12.6 0.1 0.088 12.0 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.16 gi|55377601|ref|YP_135451.1| - 0.37 10.6 2.4 0.72 9.6 0.2 2.1 1 1 1 2 2 2 0 ThiF family TrkH PF02386.11 gi|55377602|ref|YP_135452.1| - 7.9e-76 254.9 11.8 7.9e-76 254.9 8.2 1.9 2 0 0 2 2 2 1 Cation transport protein DUF433 PF04255.9 gi|55377603|ref|YP_135453.1| - 0.14 11.6 0.1 0.25 10.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF433) TrkH PF02386.11 gi|55377604|ref|YP_135454.1| - 1.2e-49 168.7 21.5 2e-49 168.1 8.3 2.5 3 0 0 3 3 3 2 Cation transport protein Usp PF00582.21 gi|55377605|ref|YP_135455.1| - 3.1e-09 37.1 0.8 3.8e-09 36.8 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.1 gi|55377606|ref|YP_135456.1| - 4.9e-48 163.7 47.3 6.6e-48 163.2 32.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|55377606|ref|YP_135456.1| - 1.1e-36 126.1 45.5 1.6e-36 125.6 31.6 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|55377606|ref|YP_135456.1| - 6.9e-19 68.4 6.0 9.2e-10 38.8 0.2 2.8 2 1 0 2 2 2 2 Universal stress protein family Trp_Tyr_perm PF03222.8 gi|55377606|ref|YP_135456.1| - 0.0016 17.3 23.9 0.0016 17.3 16.6 1.4 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family AAA_26 PF13500.1 gi|55377606|ref|YP_135456.1| - 0.053 13.1 0.0 0.15 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF839 PF05787.8 gi|55377608|ref|YP_135458.1| - 5.1e-22 78.5 15.3 1.1e-18 67.5 7.8 3.9 2 1 0 3 3 3 2 Bacterial protein of unknown function (DUF839) PTPA PF03095.10 gi|55377608|ref|YP_135458.1| - 0.081 12.0 0.2 0.13 11.4 0.2 1.2 1 0 0 1 1 1 0 Phosphotyrosyl phosphate activator (PTPA) protein Cohesin PF00963.13 gi|55377610|ref|YP_135460.1| - 0.016 15.0 2.4 0.051 13.4 1.6 2.1 1 1 0 1 1 1 0 Cohesin domain DUF839 PF05787.8 gi|55377611|ref|YP_135461.1| - 4.3e-18 65.5 18.8 6.6e-15 55.0 11.1 3.9 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) EF-hand_7 PF13499.1 gi|55377611|ref|YP_135461.1| - 0.0053 16.8 1.3 0.023 14.8 0.7 2.2 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|55377611|ref|YP_135461.1| - 0.04 13.2 4.1 1.7 8.1 0.1 3.3 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.1 gi|55377611|ref|YP_135461.1| - 0.041 13.7 2.6 10 6.3 0.0 3.0 2 0 0 2 2 2 0 EF-hand domain SrfB PF07520.6 gi|55377611|ref|YP_135461.1| - 0.19 9.1 0.4 0.28 8.6 0.3 1.1 1 0 0 1 1 1 0 Virulence factor SrfB DUF705 PF05152.7 gi|55377611|ref|YP_135461.1| - 0.24 10.3 0.1 0.36 9.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF705) PadR PF03551.9 gi|55377613|ref|YP_135463.1| - 1.1e-07 31.5 0.1 1.7e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55377613|ref|YP_135463.1| - 0.0036 17.6 0.0 0.0055 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|55377613|ref|YP_135463.1| - 0.0048 16.6 0.1 0.0067 16.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|55377613|ref|YP_135463.1| - 0.0053 16.5 0.0 0.0066 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|55377613|ref|YP_135463.1| - 0.035 14.1 0.0 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF3116 PF11313.3 gi|55377613|ref|YP_135463.1| - 0.042 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) DUF505 PF04458.7 gi|55377613|ref|YP_135463.1| - 0.082 11.0 0.0 0.089 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) SelB-wing_2 PF09106.6 gi|55377613|ref|YP_135463.1| - 0.09 12.7 0.0 0.2 11.6 0.0 1.6 1 1 0 1 1 1 0 Elongation factor SelB, winged helix TrmB PF01978.14 gi|55377613|ref|YP_135463.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB IncA PF04156.9 gi|55377614|ref|YP_135464.1| - 0.23 11.0 0.7 0.29 10.7 0.5 1.1 1 0 0 1 1 1 0 IncA protein Acyl-CoA_dh_1 PF00441.19 gi|55377615|ref|YP_135465.1| - 1.4e-50 171.2 1.3 2.4e-50 170.5 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55377615|ref|YP_135465.1| - 2.2e-37 128.0 1.5 3.3e-37 127.5 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55377615|ref|YP_135465.1| - 2.9e-24 85.8 1.8 4.8e-24 85.1 1.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55377615|ref|YP_135465.1| - 7.1e-18 63.8 0.2 4.6e-17 61.2 0.1 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain 3HCDH_N PF02737.13 gi|55377616|ref|YP_135466.1| - 6.5e-63 211.6 3.6 8.1e-63 211.3 2.5 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|55377616|ref|YP_135466.1| - 2.5e-32 111.1 0.9 2e-31 108.2 0.0 2.5 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|55377616|ref|YP_135466.1| - 3.3e-05 23.7 7.4 0.00027 20.7 5.1 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|55377616|ref|YP_135466.1| - 0.00016 21.4 0.7 0.00027 20.6 0.5 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|55377616|ref|YP_135466.1| - 0.0016 17.6 0.2 0.0025 16.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|55377616|ref|YP_135466.1| - 0.002 18.4 2.5 0.0073 16.7 1.7 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|55377616|ref|YP_135466.1| - 0.013 15.8 0.5 0.02 15.1 0.4 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain ApbA PF02558.11 gi|55377616|ref|YP_135466.1| - 0.084 12.3 0.1 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_3 PF03447.11 gi|55377616|ref|YP_135466.1| - 0.47 10.8 2.8 1.2 9.5 1.9 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|55377616|ref|YP_135466.1| - 4.4 7.0 5.8 6.3 6.5 0.3 2.3 1 1 1 2 2 2 0 Rossmann-like domain FBPase PF00316.15 gi|55377617|ref|YP_135467.1| - 5.8e-67 225.8 0.0 6.9e-67 225.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase PKD PF00801.15 gi|55377618|ref|YP_135468.1| - 7.4e-12 44.8 3.2 7.4e-12 44.8 2.2 4.3 4 0 0 4 4 4 1 PKD domain Big_3_4 PF13754.1 gi|55377618|ref|YP_135468.1| - 5e-07 29.9 4.9 2.6e-05 24.4 3.1 7.1 7 2 1 8 8 8 2 Bacterial Ig-like domain (group 3) Big_3_3 PF13750.1 gi|55377618|ref|YP_135468.1| - 0.022 14.1 6.6 0.077 12.4 0.0 3.6 2 1 2 4 4 4 0 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|55377618|ref|YP_135468.1| - 0.029 14.4 0.1 66 3.6 0.0 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) DUF3099 PF11298.3 gi|55377619|ref|YP_135469.1| - 0.077 12.7 2.2 0.094 12.4 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) ELFV_dehydrog PF00208.16 gi|55377620|ref|YP_135470.1| - 2.8e-72 243.2 0.9 3.5e-72 242.9 0.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|55377620|ref|YP_135470.1| - 1.2e-51 173.7 0.0 1.7e-51 173.2 0.0 1.2 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|55377620|ref|YP_135470.1| - 0.00052 19.2 0.0 0.00099 18.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|55377620|ref|YP_135470.1| - 0.0027 17.3 0.1 0.0058 16.2 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DUF4251 PF14059.1 gi|55377620|ref|YP_135470.1| - 0.086 12.6 0.4 1.7 8.4 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4251) Malic_M PF03949.10 gi|55377620|ref|YP_135470.1| - 0.1 12.1 0.2 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Polyketide_cyc PF03364.15 gi|55377621|ref|YP_135471.1| - 6.8e-08 32.5 0.0 9.6e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|55377621|ref|YP_135471.1| - 0.00012 22.3 0.1 0.00013 22.1 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EamA PF00892.15 gi|55377622|ref|YP_135472.1| - 2.9e-15 56.3 6.6 3.6e-15 56.1 4.6 1.1 1 0 0 1 1 1 1 EamA-like transporter family ExoD PF06055.7 gi|55377622|ref|YP_135472.1| - 0.032 13.3 1.3 0.032 13.3 0.9 2.2 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD DUF2530 PF10745.4 gi|55377622|ref|YP_135472.1| - 1.9 8.4 7.8 2.1 8.3 1.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) RIO1 PF01163.17 gi|55377623|ref|YP_135473.1| - 2e-09 37.1 0.0 3e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|55377623|ref|YP_135473.1| - 6.6e-06 26.0 0.4 0.014 15.1 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|55377623|ref|YP_135473.1| - 2.1e-05 23.6 0.0 3.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|55377623|ref|YP_135473.1| - 0.04 13.1 0.0 0.054 12.6 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|55377623|ref|YP_135473.1| - 0.059 12.5 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Acyl-CoA_dh_N PF02771.11 gi|55377624|ref|YP_135474.1| - 8.3e-36 123.0 0.0 1.5e-35 122.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55377624|ref|YP_135474.1| - 8.5e-20 70.0 0.4 3.8e-19 67.9 0.1 2.1 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|55377624|ref|YP_135474.1| - 4.7e-12 46.2 0.0 7.3e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55377624|ref|YP_135474.1| - 0.088 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|55377625|ref|YP_135475.1| - 1.1e-27 96.9 0.1 1.2e-27 96.8 0.1 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55377625|ref|YP_135475.1| - 8.7e-09 35.7 0.1 9.5e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Usp PF00582.21 gi|55377626|ref|YP_135476.1| - 2.3e-14 53.7 4.7 2.6e-14 53.5 3.2 1.0 1 0 0 1 1 1 1 Universal stress protein family RtcB PF01139.12 gi|55377627|ref|YP_135477.1| - 2.1e-111 372.8 0.0 2.8e-111 372.5 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.7 gi|55377628|ref|YP_135478.1| - 3.7e-08 33.6 8.3 3.7e-08 33.6 5.7 1.8 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|55377628|ref|YP_135478.1| - 0.0001 22.0 9.2 0.00074 19.2 6.4 2.0 1 1 0 1 1 1 1 TQO small subunit DoxD CopD PF05425.8 gi|55377629|ref|YP_135479.1| - 1.3 9.2 5.3 2.7 8.2 3.7 1.5 1 1 0 1 1 1 0 Copper resistance protein D DUF457 PF04307.9 gi|55377630|ref|YP_135480.1| - 8.2e-10 38.2 1.2 9.1e-10 38.0 0.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CDP-OH_P_transf PF01066.16 gi|55377631|ref|YP_135481.1| - 5.3e-10 39.5 8.0 5.3e-10 39.5 5.5 2.3 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase PAS_4 PF08448.5 gi|55377632|ref|YP_135482.1| - 1.4e-12 47.5 0.3 3e-11 43.3 0.2 2.7 1 1 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|55377632|ref|YP_135482.1| - 1.7e-12 47.0 0.0 3.6e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|55377632|ref|YP_135482.1| - 2.2e-06 27.9 0.0 9.7e-06 25.9 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|55377632|ref|YP_135482.1| - 5.2e-06 26.2 0.0 2.3e-05 24.1 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|55377632|ref|YP_135482.1| - 7.3e-06 25.7 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55377632|ref|YP_135482.1| - 0.00017 21.3 0.0 0.00052 19.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|55377632|ref|YP_135482.1| - 0.00022 21.1 1.5 0.00035 20.5 0.3 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|55377632|ref|YP_135482.1| - 0.0019 17.7 0.6 0.0038 16.7 0.4 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.2 gi|55377632|ref|YP_135482.1| - 0.0028 17.6 0.1 0.076 13.0 0.0 2.7 1 1 0 1 1 1 1 PAS fold PAS_10 PF13596.1 gi|55377632|ref|YP_135482.1| - 0.0077 16.4 0.0 0.038 14.2 0.0 2.2 1 1 0 1 1 1 1 PAS domain FliH PF02108.11 gi|55377632|ref|YP_135482.1| - 0.31 10.9 4.8 6 6.7 0.3 2.5 2 0 0 2 2 2 0 Flagellar assembly protein FliH Abhydrolase_6 PF12697.2 gi|55377633|ref|YP_135483.1| - 1.2e-30 107.0 10.2 1.4e-30 106.8 7.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55377633|ref|YP_135483.1| - 1.9e-15 56.9 2.5 7.7e-15 54.9 1.7 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55377633|ref|YP_135483.1| - 2.5e-12 46.8 0.4 8.7e-10 38.5 0.3 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|55377633|ref|YP_135483.1| - 0.0012 18.7 0.1 0.0033 17.2 0.0 1.9 2 1 0 2 2 2 1 TAP-like protein FSH1 PF03959.8 gi|55377633|ref|YP_135483.1| - 0.065 12.6 0.0 0.4 10.1 0.0 2.0 2 1 0 2 2 2 0 Serine hydrolase (FSH1) DUF2048 PF09752.4 gi|55377633|ref|YP_135483.1| - 0.12 11.2 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) AAA PF00004.24 gi|55377635|ref|YP_135485.1| - 5.9e-100 330.6 0.0 3.9e-49 166.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|55377635|ref|YP_135485.1| - 7.8e-25 86.6 0.0 5.4e-24 83.9 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|55377635|ref|YP_135485.1| - 8.6e-18 64.8 0.1 1.1e-08 35.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|55377635|ref|YP_135485.1| - 1.2e-15 57.2 0.0 1.6e-07 30.5 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|55377635|ref|YP_135485.1| - 3.4e-15 55.4 0.3 8.3e-15 54.1 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|55377635|ref|YP_135485.1| - 2.4e-14 53.7 0.0 2.2e-07 31.0 0.0 3.7 3 1 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|55377635|ref|YP_135485.1| - 9.1e-13 48.4 0.1 0.00017 21.6 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|55377635|ref|YP_135485.1| - 1e-11 44.8 0.0 4.2e-05 23.4 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|55377635|ref|YP_135485.1| - 3e-11 43.1 1.2 0.00012 21.8 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|55377635|ref|YP_135485.1| - 5e-11 42.5 0.0 0.00036 20.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|55377635|ref|YP_135485.1| - 2.3e-10 41.3 0.1 0.00089 20.0 0.0 3.1 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|55377635|ref|YP_135485.1| - 7.4e-10 38.0 0.0 0.00016 20.5 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|55377635|ref|YP_135485.1| - 1.5e-09 37.5 0.3 0.0022 17.6 0.0 3.3 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|55377635|ref|YP_135485.1| - 1.8e-09 36.9 0.0 0.001 18.2 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|55377635|ref|YP_135485.1| - 2.4e-09 36.8 0.0 0.00052 19.4 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|55377635|ref|YP_135485.1| - 1.3e-07 31.7 0.0 0.019 15.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|55377635|ref|YP_135485.1| - 3.8e-07 29.4 0.3 0.012 14.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|55377635|ref|YP_135485.1| - 7.2e-07 28.3 0.0 0.0022 16.9 0.0 3.0 2 1 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|55377635|ref|YP_135485.1| - 2e-06 27.5 0.0 0.4 10.3 0.0 3.7 4 0 0 4 4 4 2 NACHT domain AAA_28 PF13521.1 gi|55377635|ref|YP_135485.1| - 2.3e-06 27.6 0.0 0.055 13.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|55377635|ref|YP_135485.1| - 2.7e-06 26.6 0.1 0.22 10.5 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.6 gi|55377635|ref|YP_135485.1| - 3e-06 26.8 0.0 0.028 14.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|55377635|ref|YP_135485.1| - 3.3e-06 26.4 0.1 0.025 13.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_18 PF13238.1 gi|55377635|ref|YP_135485.1| - 3.4e-06 27.3 0.1 0.064 13.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|55377635|ref|YP_135485.1| - 1.2e-05 24.8 0.0 0.16 11.4 0.0 3.2 4 0 0 4 4 3 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|55377635|ref|YP_135485.1| - 2e-05 24.0 6.5 1.9 7.8 0.1 4.3 2 2 2 4 4 4 2 AAA domain Sigma54_activ_2 PF14532.1 gi|55377635|ref|YP_135485.1| - 2.3e-05 24.4 0.0 0.58 10.2 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|55377635|ref|YP_135485.1| - 2.6e-05 24.5 0.1 0.14 12.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NB-ARC PF00931.17 gi|55377635|ref|YP_135485.1| - 2.8e-05 23.1 0.0 0.12 11.1 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|55377635|ref|YP_135485.1| - 3.8e-05 22.8 0.0 0.2 10.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|55377635|ref|YP_135485.1| - 5.8e-05 22.9 0.0 0.68 9.5 0.0 3.3 2 1 1 3 3 3 2 Archaeal ATPase AAA_24 PF13479.1 gi|55377635|ref|YP_135485.1| - 6.4e-05 22.6 0.0 0.069 12.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|55377635|ref|YP_135485.1| - 9.2e-05 22.0 0.0 0.27 10.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|55377635|ref|YP_135485.1| - 0.00011 21.8 0.0 0.31 10.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|55377635|ref|YP_135485.1| - 0.00015 21.4 1.0 0.46 10.1 0.0 3.8 2 2 1 3 3 3 1 NTPase Parvo_NS1 PF01057.12 gi|55377635|ref|YP_135485.1| - 0.00018 20.4 0.1 0.52 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|55377635|ref|YP_135485.1| - 0.00031 20.3 0.0 0.94 9.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|55377635|ref|YP_135485.1| - 0.00043 20.0 0.0 0.22 11.1 0.0 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|55377635|ref|YP_135485.1| - 0.00066 18.6 0.0 0.85 8.4 0.0 3.0 3 0 0 3 3 3 1 Type II/IV secretion system protein ResIII PF04851.10 gi|55377635|ref|YP_135485.1| - 0.0036 17.1 0.0 2.3 8.0 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|55377635|ref|YP_135485.1| - 0.0044 16.5 0.0 0.36 10.3 0.0 2.4 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.24 gi|55377635|ref|YP_135485.1| - 0.0064 15.9 0.7 12 5.3 0.0 3.6 2 2 0 3 3 3 0 DEAD/DEAH box helicase HJURP_C PF12347.3 gi|55377635|ref|YP_135485.1| - 0.035 13.6 0.2 0.1 12.1 0.1 1.9 2 0 0 2 2 1 0 Holliday junction regulator protein family C-terminal repeat KTI12 PF08433.5 gi|55377635|ref|YP_135485.1| - 0.039 13.1 0.0 8.4 5.5 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AFG1_ATPase PF03969.11 gi|55377635|ref|YP_135485.1| - 0.046 12.5 0.0 5.1 5.7 0.0 2.7 3 0 0 3 3 2 0 AFG1-like ATPase SKI PF01202.17 gi|55377635|ref|YP_135485.1| - 0.047 13.5 0.0 5.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.16 gi|55377635|ref|YP_135485.1| - 0.047 13.1 0.1 25 4.2 0.0 3.5 2 1 1 3 3 3 0 Guanylate kinase KAP_NTPase PF07693.9 gi|55377635|ref|YP_135485.1| - 0.062 12.2 0.0 7.1 5.5 0.0 2.9 2 1 1 3 3 3 0 KAP family P-loop domain Torsin PF06309.6 gi|55377635|ref|YP_135485.1| - 0.09 12.6 0.0 4.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.9 gi|55377635|ref|YP_135485.1| - 0.092 11.6 0.0 2.7 6.8 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Viral_helicase1 PF01443.13 gi|55377635|ref|YP_135485.1| - 0.099 12.1 0.0 11 5.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.7 gi|55377635|ref|YP_135485.1| - 0.13 11.7 0.3 25 4.2 0.1 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Vps4_C PF09336.5 gi|55377635|ref|YP_135485.1| - 0.13 12.1 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Regulator_TrmB PF11495.3 gi|55377636|ref|YP_135486.1| - 3.5e-60 202.8 0.0 3.9e-60 202.7 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.1 gi|55377636|ref|YP_135486.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 PLD-like domain HisKA PF00512.20 gi|55377637|ref|YP_135487.1| - 1.2e-10 41.2 2.3 1.2e-10 41.2 1.6 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55377637|ref|YP_135487.1| - 1e-09 39.0 0.2 3.4e-09 37.3 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55377637|ref|YP_135487.1| - 4.9e-06 26.6 0.1 1.2e-05 25.4 0.1 1.7 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|55377637|ref|YP_135487.1| - 6.7e-05 22.8 0.0 0.00017 21.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|55377637|ref|YP_135487.1| - 0.014 15.5 1.1 0.028 14.5 0.1 2.1 2 0 0 2 2 2 0 GAF domain DUF420 PF04238.7 gi|55377638|ref|YP_135488.1| - 3.3e-37 127.4 7.8 5.1e-37 126.7 5.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|55377638|ref|YP_135488.1| - 1.4e-05 25.1 2.1 1.4e-05 25.1 1.5 2.5 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) Acetyltransf_3 PF13302.1 gi|55377639|ref|YP_135489.1| - 1.1e-23 84.0 0.0 1.3e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55377639|ref|YP_135489.1| - 2.2e-13 50.4 0.0 7e-13 48.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55377639|ref|YP_135489.1| - 3.4e-09 36.6 0.0 7.4e-09 35.5 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|55377639|ref|YP_135489.1| - 4.9e-05 23.2 0.0 7.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377639|ref|YP_135489.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 1 0 1 1 1 0 FR47-like protein GATase_6 PF13522.1 gi|55377640|ref|YP_135490.1| - 1e-20 74.0 0.0 2.1e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|55377640|ref|YP_135490.1| - 3.3e-20 72.0 0.0 7.1e-20 71.0 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|55377640|ref|YP_135490.1| - 5.5e-19 68.0 0.0 9.3e-13 47.6 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|55377640|ref|YP_135490.1| - 5.5e-12 45.4 0.1 1.7e-11 43.9 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|55377640|ref|YP_135490.1| - 0.00094 17.9 0.0 0.0016 17.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II LSM PF01423.17 gi|55377641|ref|YP_135491.1| - 3.1e-15 55.4 0.3 4.7e-15 54.8 0.2 1.3 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|55377641|ref|YP_135491.1| - 0.00035 20.4 0.6 0.0071 16.2 0.1 2.0 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF2642 PF10842.3 gi|55377641|ref|YP_135491.1| - 0.039 13.4 0.1 0.064 12.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) Peptidase_M42 PF05343.9 gi|55377642|ref|YP_135492.1| - 2.6e-76 256.1 2.3 3e-76 255.9 1.6 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|55377642|ref|YP_135492.1| - 2e-13 50.2 0.9 3e-13 49.6 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|55377642|ref|YP_135492.1| - 4e-06 25.6 0.1 0.013 14.0 0.0 2.4 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) DUF2342 PF10103.4 gi|55377644|ref|YP_135494.1| - 8.2e-89 297.9 4.4 1.9e-50 171.7 0.4 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) HrcA_DNA-bdg PF03444.10 gi|55377645|ref|YP_135495.1| - 1.6e-31 107.5 0.0 2.2e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.7 gi|55377645|ref|YP_135495.1| - 4.2e-08 32.6 0.0 6.6e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|55377645|ref|YP_135495.1| - 1.2e-07 31.7 0.0 2.6e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|55377645|ref|YP_135495.1| - 0.00021 20.9 0.0 0.00038 20.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|55377645|ref|YP_135495.1| - 0.0023 17.7 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_15 PF12324.3 gi|55377645|ref|YP_135495.1| - 0.0077 15.8 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase HTH_IclR PF09339.5 gi|55377645|ref|YP_135495.1| - 0.039 13.5 0.3 0.08 12.5 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|55377645|ref|YP_135495.1| - 0.052 13.1 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|55377645|ref|YP_135495.1| - 0.053 12.9 0.0 0.089 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55377645|ref|YP_135495.1| - 0.072 12.7 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF2299 PF10061.4 gi|55377645|ref|YP_135495.1| - 0.073 12.5 0.1 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) RuvB_C PF05491.8 gi|55377645|ref|YP_135495.1| - 0.096 12.3 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus Phage_rep_org_N PF09681.5 gi|55377645|ref|YP_135495.1| - 0.13 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Phosphodiest PF01663.17 gi|55377646|ref|YP_135496.1| - 4.7e-36 124.8 0.0 1.2e-35 123.5 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|55377646|ref|YP_135496.1| - 0.15 11.4 0.0 0.73 9.1 0.0 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily zf-C2H2_jaz PF12171.3 gi|55377648|ref|YP_135498.1| - 0.0017 18.4 0.3 0.0024 17.9 0.2 1.2 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|55377648|ref|YP_135498.1| - 0.0043 17.2 0.1 0.0056 16.8 0.1 1.2 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2 PF00096.21 gi|55377648|ref|YP_135498.1| - 0.0068 16.6 0.3 0.009 16.3 0.2 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|55377648|ref|YP_135498.1| - 0.022 15.0 0.1 0.028 14.7 0.1 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger DUF4379 PF14311.1 gi|55377648|ref|YP_135498.1| - 0.041 13.6 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-C2H2_3 PF13878.1 gi|55377648|ref|YP_135498.1| - 0.078 12.5 3.9 0.11 12.0 2.7 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Rubredoxin PF00301.15 gi|55377648|ref|YP_135498.1| - 0.14 12.0 1.1 0.18 11.7 0.8 1.3 1 0 0 1 1 1 0 Rubredoxin C1_3 PF07649.7 gi|55377648|ref|YP_135498.1| - 0.15 12.1 0.3 0.25 11.4 0.0 1.6 2 0 0 2 2 2 0 C1-like domain AAA PF00004.24 gi|55377649|ref|YP_135499.1| - 3.9e-94 311.8 0.0 5.2e-46 156.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|55377649|ref|YP_135499.1| - 2.3e-19 69.1 0.3 1.3e-18 66.6 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|55377649|ref|YP_135499.1| - 2e-15 56.4 0.1 8.2e-07 28.3 0.0 3.1 2 2 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|55377649|ref|YP_135499.1| - 1.8e-14 54.1 1.5 1.8e-05 24.7 0.0 3.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|55377649|ref|YP_135499.1| - 1.2e-13 51.3 0.6 0.00014 21.9 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|55377649|ref|YP_135499.1| - 1.3e-12 47.9 0.0 4e-06 26.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|55377649|ref|YP_135499.1| - 5.2e-12 45.8 0.0 0.00013 21.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|55377649|ref|YP_135499.1| - 3.6e-11 43.9 0.5 0.00054 20.7 0.1 2.9 2 2 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|55377649|ref|YP_135499.1| - 1.7e-10 40.4 0.5 0.00053 19.6 0.0 3.6 2 1 0 2 2 2 2 Part of AAA domain AAA_5 PF07728.9 gi|55377649|ref|YP_135499.1| - 2.1e-10 40.4 1.6 0.0008 19.1 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|55377649|ref|YP_135499.1| - 2.1e-09 36.6 0.0 0.00082 18.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|55377649|ref|YP_135499.1| - 4e-09 36.4 0.0 0.00093 19.1 0.0 2.6 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|55377649|ref|YP_135499.1| - 2.5e-08 34.0 0.4 0.0033 17.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|55377649|ref|YP_135499.1| - 2.8e-08 34.1 0.0 0.0045 17.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|55377649|ref|YP_135499.1| - 3.2e-08 32.9 0.0 0.00029 19.9 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|55377649|ref|YP_135499.1| - 9.9e-08 31.6 0.0 0.016 14.6 0.0 2.8 2 1 1 3 3 3 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|55377649|ref|YP_135499.1| - 1.4e-06 28.3 0.0 0.083 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|55377649|ref|YP_135499.1| - 1.7e-06 28.1 0.0 0.047 13.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|55377649|ref|YP_135499.1| - 1.7e-06 27.3 0.2 0.047 12.8 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|55377649|ref|YP_135499.1| - 2e-06 27.3 0.0 0.27 10.6 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|55377649|ref|YP_135499.1| - 2.6e-06 26.5 0.0 0.00082 18.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|55377649|ref|YP_135499.1| - 3.1e-06 26.9 0.5 2 8.0 0.0 4.0 4 0 0 4 4 4 2 NACHT domain AAA_25 PF13481.1 gi|55377649|ref|YP_135499.1| - 3.4e-06 26.5 9.7 0.83 9.0 0.1 4.6 2 2 1 3 3 3 3 AAA domain ABC_tran PF00005.22 gi|55377649|ref|YP_135499.1| - 2.5e-05 24.5 0.0 0.45 10.8 0.0 3.0 2 1 1 3 3 3 2 ABC transporter AAA_3 PF07726.6 gi|55377649|ref|YP_135499.1| - 2.8e-05 23.7 0.0 0.083 12.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|55377649|ref|YP_135499.1| - 3.8e-05 23.0 0.3 0.38 9.9 0.0 3.2 4 0 0 4 4 3 2 PhoH-like protein Arch_ATPase PF01637.13 gi|55377649|ref|YP_135499.1| - 6.8e-05 22.6 0.0 0.19 11.4 0.0 2.8 2 1 0 2 2 2 2 Archaeal ATPase KaiC PF06745.8 gi|55377649|ref|YP_135499.1| - 8e-05 21.8 0.4 1.2 8.2 0.0 3.8 2 2 2 4 4 4 2 KaiC Parvo_NS1 PF01057.12 gi|55377649|ref|YP_135499.1| - 0.00013 20.9 0.0 0.29 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|55377649|ref|YP_135499.1| - 0.00015 20.7 0.0 0.093 11.5 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|55377649|ref|YP_135499.1| - 0.00025 20.1 0.0 0.22 10.4 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|55377649|ref|YP_135499.1| - 0.00026 20.6 0.0 0.23 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|55377649|ref|YP_135499.1| - 0.00047 19.8 0.0 0.14 11.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain CDC48_2 PF02933.12 gi|55377649|ref|YP_135499.1| - 0.001 18.6 2.2 0.0025 17.3 0.5 2.5 1 1 1 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_30 PF13604.1 gi|55377649|ref|YP_135499.1| - 0.0012 18.4 0.7 0.93 9.0 0.2 3.3 2 1 0 2 2 2 1 AAA domain CPT PF07931.7 gi|55377649|ref|YP_135499.1| - 0.0013 18.4 0.1 0.83 9.2 0.0 3.0 3 0 0 3 3 2 1 Chloramphenicol phosphotransferase-like protein UPF0079 PF02367.12 gi|55377649|ref|YP_135499.1| - 0.0026 17.4 0.0 2.8 7.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|55377649|ref|YP_135499.1| - 0.0037 17.1 0.0 0.63 9.9 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family NTPase_1 PF03266.10 gi|55377649|ref|YP_135499.1| - 0.021 14.5 0.5 17 5.0 0.0 3.7 2 2 1 4 4 4 0 NTPase DEAD PF00270.24 gi|55377649|ref|YP_135499.1| - 0.038 13.4 1.2 58 3.1 0.0 3.8 3 1 0 4 4 4 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|55377649|ref|YP_135499.1| - 0.053 13.3 0.0 5.5 6.7 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF4242 PF14026.1 gi|55377649|ref|YP_135499.1| - 0.073 13.1 0.1 11 6.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4242) Torsin PF06309.6 gi|55377649|ref|YP_135499.1| - 0.089 12.6 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 Torsin Zot PF05707.7 gi|55377649|ref|YP_135499.1| - 0.12 11.8 0.8 41 3.5 0.1 3.8 3 1 0 3 3 3 0 Zonular occludens toxin (Zot) Viral_helicase1 PF01443.13 gi|55377649|ref|YP_135499.1| - 0.14 11.6 0.0 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF4349 PF14257.1 gi|55377650|ref|YP_135500.1| - 3.3e-69 233.0 5.7 4.5e-69 232.5 3.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DivIC PF04977.10 gi|55377650|ref|YP_135500.1| - 0.0015 17.9 7.9 1.6 8.2 1.5 3.2 2 1 1 3 3 3 2 Septum formation initiator IncA PF04156.9 gi|55377650|ref|YP_135500.1| - 0.0028 17.2 1.4 0.0028 17.2 1.0 1.8 2 0 0 2 2 2 1 IncA protein Spc7 PF08317.6 gi|55377650|ref|YP_135500.1| - 0.011 14.3 2.5 0.015 13.9 1.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein COG2 PF06148.6 gi|55377650|ref|YP_135500.1| - 0.014 15.2 0.8 0.022 14.6 0.6 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-F_leu_zip PF10473.4 gi|55377650|ref|YP_135500.1| - 0.059 13.2 5.9 0.11 12.4 4.1 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.6 gi|55377650|ref|YP_135500.1| - 0.072 11.5 3.2 0.091 11.2 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TMF_TATA_bd PF12325.3 gi|55377650|ref|YP_135500.1| - 0.11 12.1 8.7 0.6 9.8 2.4 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Viral_P18 PF04521.8 gi|55377650|ref|YP_135500.1| - 0.12 11.8 2.1 0.18 11.2 0.6 1.8 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein APG6 PF04111.7 gi|55377650|ref|YP_135500.1| - 0.12 11.3 3.7 0.17 10.8 2.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 TBPIP PF07106.8 gi|55377650|ref|YP_135500.1| - 0.52 9.8 3.5 0.46 10.0 0.6 1.9 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4140 PF13600.1 gi|55377650|ref|YP_135500.1| - 0.84 10.1 7.8 6.9 7.1 5.4 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) ADIP PF11559.3 gi|55377650|ref|YP_135500.1| - 1.2 9.0 7.4 5.7 6.8 5.0 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Uds1 PF15456.1 gi|55377650|ref|YP_135500.1| - 1.7 8.6 7.7 6.4 6.7 5.3 1.9 1 1 0 1 1 1 0 Up-regulated During Septation V_ATPase_I PF01496.14 gi|55377650|ref|YP_135500.1| - 1.9 6.2 4.5 11 3.7 3.6 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Spc24 PF08286.6 gi|55377650|ref|YP_135500.1| - 2.3 7.9 5.9 5.2 6.7 0.6 2.7 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 CN_hydrolase PF00795.17 gi|55377651|ref|YP_135501.1| - 7.8e-28 97.0 0.0 1e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.2 gi|55377651|ref|YP_135501.1| - 0.11 12.2 0.0 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3875) Polyketide_cyc2 PF10604.4 gi|55377652|ref|YP_135502.1| - 1.7e-13 50.9 1.2 2e-13 50.7 0.8 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55377652|ref|YP_135502.1| - 2.8e-06 27.3 0.2 3.3e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|55377652|ref|YP_135502.1| - 4.1e-05 23.2 0.0 5.9e-05 22.7 0.0 1.2 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) AHSA1 PF08327.6 gi|55377652|ref|YP_135502.1| - 0.0027 17.8 1.8 0.03 14.4 1.2 2.1 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF2505 PF10698.4 gi|55377652|ref|YP_135502.1| - 0.023 14.1 0.2 3.9 6.9 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2505) HTH_AsnC-type PF13404.1 gi|55377653|ref|YP_135503.1| - 0.00023 20.6 0.6 0.0031 17.0 0.4 2.2 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|55377653|ref|YP_135503.1| - 0.00042 19.6 1.7 0.0019 17.5 0.4 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|55377653|ref|YP_135503.1| - 0.0053 16.8 0.0 0.0066 16.5 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.2 gi|55377653|ref|YP_135503.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|55377653|ref|YP_135503.1| - 0.024 14.1 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.2 gi|55377653|ref|YP_135503.1| - 0.034 13.8 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|55377653|ref|YP_135503.1| - 0.07 13.1 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|55377653|ref|YP_135503.1| - 0.1 12.0 0.0 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Claudin_2 PF13903.1 gi|55377654|ref|YP_135504.1| - 0.019 14.6 2.5 0.019 14.6 1.8 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction TPPK_C PF12555.3 gi|55377654|ref|YP_135504.1| - 0.32 10.7 5.8 2.3 8.0 2.4 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF3325 PF11804.3 gi|55377654|ref|YP_135504.1| - 0.47 10.3 6.0 2.6 8.0 4.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) ATP-synt_C PF00137.16 gi|55377654|ref|YP_135504.1| - 5.4 7.0 10.9 47 3.9 7.5 1.9 1 1 0 1 1 1 0 ATP synthase subunit C Trp_oprn_chp PF09534.5 gi|55377654|ref|YP_135504.1| - 6.2 6.3 9.8 35 3.9 6.9 1.8 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) LEA_2 PF03168.8 gi|55377655|ref|YP_135505.1| - 5.2e-17 62.0 0.1 2.6e-08 34.1 0.0 2.4 2 0 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.1 gi|55377655|ref|YP_135505.1| - 0.012 15.4 0.5 0.026 14.2 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Trp_oprn_chp PF09534.5 gi|55377655|ref|YP_135505.1| - 0.092 12.3 1.0 0.17 11.4 0.7 1.4 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Y1_Tnp PF01797.11 gi|55377656|ref|YP_135506.1| - 4.3e-38 129.8 0.2 4.9e-38 129.7 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.6 gi|55377657|ref|YP_135507.1| - 2.1e-19 68.9 0.3 3.5e-19 68.2 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|55377657|ref|YP_135507.1| - 0.0003 20.2 0.4 0.00053 19.4 0.3 1.5 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.2 gi|55377657|ref|YP_135507.1| - 0.02 14.6 4.7 0.037 13.8 3.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain PhoU PF01895.14 gi|55377660|ref|YP_135510.1| - 1.8e-13 50.6 6.6 5.2e-11 42.8 0.1 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|55377660|ref|YP_135510.1| - 3.8e-06 26.4 0.0 7.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|55377661|ref|YP_135511.1| - 2.2e-51 174.3 0.0 3.2e-51 173.7 0.0 1.2 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|55377661|ref|YP_135511.1| - 0.00014 21.2 0.2 0.00014 21.2 0.2 2.3 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain MoCF_biosynth PF00994.19 gi|55377662|ref|YP_135512.1| - 4e-35 120.3 0.2 5.5e-35 119.8 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain HTH_IclR PF09339.5 gi|55377663|ref|YP_135513.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55377663|ref|YP_135513.1| - 0.02 14.2 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BPD_transp_2 PF02653.11 gi|55377664|ref|YP_135514.1| - 5.2e-39 133.8 41.8 5.2e-39 133.8 29.0 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55377665|ref|YP_135515.1| - 7.9e-44 149.6 34.8 7.9e-44 149.6 24.1 2.3 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4271 PF14093.1 gi|55377665|ref|YP_135515.1| - 0.0041 16.8 0.1 0.0041 16.8 0.1 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4271) HAMP PF00672.20 gi|55377665|ref|YP_135515.1| - 0.24 11.6 0.1 0.24 11.6 0.1 3.9 3 1 1 4 4 4 0 HAMP domain ABC_tran PF00005.22 gi|55377666|ref|YP_135516.1| - 2.3e-29 102.4 0.0 3.1e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377666|ref|YP_135516.1| - 7.6e-11 42.5 1.0 4.1e-05 23.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|55377666|ref|YP_135516.1| - 3.3e-07 29.8 0.0 7.1e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|55377666|ref|YP_135516.1| - 7.9e-05 21.9 0.5 0.28 10.3 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55377666|ref|YP_135516.1| - 0.0001 21.7 0.2 0.00018 20.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55377666|ref|YP_135516.1| - 0.00022 21.6 1.1 0.00033 21.0 0.8 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55377666|ref|YP_135516.1| - 0.022 14.2 0.3 1.2 8.5 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|55377666|ref|YP_135516.1| - 0.05 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|55377666|ref|YP_135516.1| - 0.098 12.6 0.1 0.13 12.2 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|55377666|ref|YP_135516.1| - 0.28 10.2 0.3 13 4.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|55377667|ref|YP_135517.1| - 9.7e-30 103.6 0.0 1.8e-29 102.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|55377667|ref|YP_135517.1| - 1.1e-12 48.5 0.1 3.4e-10 40.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55377667|ref|YP_135517.1| - 7.9e-05 21.9 1.0 0.0019 17.4 0.1 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55377667|ref|YP_135517.1| - 0.00011 22.1 0.0 0.00019 21.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|55377667|ref|YP_135517.1| - 0.00026 21.3 0.0 0.00034 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55377667|ref|YP_135517.1| - 0.00041 19.8 0.0 0.00079 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|55377667|ref|YP_135517.1| - 0.0012 18.3 0.2 0.0066 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|55377667|ref|YP_135517.1| - 0.0046 16.3 0.0 0.007 15.7 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_22 PF13401.1 gi|55377667|ref|YP_135517.1| - 0.006 16.7 0.3 0.11 12.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|55377667|ref|YP_135517.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|55377667|ref|YP_135517.1| - 0.011 14.7 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|55377667|ref|YP_135517.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|55377667|ref|YP_135517.1| - 0.028 14.3 0.0 0.049 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|55377667|ref|YP_135517.1| - 0.032 13.4 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|55377667|ref|YP_135517.1| - 0.033 13.2 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|55377667|ref|YP_135517.1| - 0.034 13.5 0.0 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|55377667|ref|YP_135517.1| - 0.042 13.5 0.0 0.075 12.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|55377667|ref|YP_135517.1| - 0.046 14.5 1.3 0.1 13.3 0.9 2.0 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|55377667|ref|YP_135517.1| - 0.086 12.2 0.0 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 Guanylate kinase SbcCD_C PF13558.1 gi|55377667|ref|YP_135517.1| - 0.1 12.5 2.7 2.7 7.9 1.9 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|55377667|ref|YP_135517.1| - 0.15 10.8 0.2 0.23 10.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Peripla_BP_6 PF13458.1 gi|55377668|ref|YP_135518.1| - 2.4e-27 96.2 13.5 2.5e-22 79.7 1.8 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|55377668|ref|YP_135518.1| - 2.1e-18 66.2 2.0 3.1e-14 52.5 0.2 2.2 2 0 0 2 2 2 2 Receptor family ligand binding region LppC PF04348.8 gi|55377668|ref|YP_135518.1| - 0.046 12.2 0.2 1.8 7.0 0.0 2.1 2 0 0 2 2 2 0 LppC putative lipoprotein TAT_signal PF10518.4 gi|55377668|ref|YP_135518.1| - 0.048 13.6 1.1 0.048 13.6 0.7 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Sod_Fe_C PF02777.13 gi|55377669|ref|YP_135519.1| - 3.6e-37 126.4 0.1 7.1e-37 125.4 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|55377669|ref|YP_135519.1| - 5.7e-30 103.3 0.6 1.1e-29 102.4 0.4 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain FAD_binding_7 PF03441.9 gi|55377670|ref|YP_135520.1| - 9.9e-102 339.8 1.2 1.3e-101 339.4 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|55377670|ref|YP_135520.1| - 4e-46 156.7 0.1 2.1e-45 154.4 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase Amidohydro_2 PF04909.9 gi|55377670|ref|YP_135520.1| - 6.1e-05 22.7 0.3 0.00013 21.6 0.2 1.5 1 0 0 1 1 1 1 Amidohydrolase ECH PF00378.15 gi|55377671|ref|YP_135521.1| - 1.6e-52 178.1 0.0 1.8e-52 177.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|55377671|ref|YP_135521.1| - 0.06 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region HTH_24 PF13412.1 gi|55377672|ref|YP_135522.1| - 0.00018 20.8 0.0 0.0004 19.7 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_32 PF13565.1 gi|55377672|ref|YP_135522.1| - 0.00061 20.5 0.1 0.019 15.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|55377672|ref|YP_135522.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.1 gi|55377672|ref|YP_135522.1| - 0.0058 16.1 0.1 0.0087 15.5 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|55377672|ref|YP_135522.1| - 0.048 13.9 0.0 0.13 12.6 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain CAMSAP_CKK PF08683.6 gi|55377672|ref|YP_135522.1| - 0.07 12.8 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated PqqD PF05402.7 gi|55377672|ref|YP_135522.1| - 0.08 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) UPF0058 PF01893.11 gi|55377673|ref|YP_135523.1| - 2.4e-34 117.2 0.8 2.7e-34 117.0 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TPK_catalytic PF04263.11 gi|55377673|ref|YP_135523.1| - 0.12 11.9 0.3 0.14 11.7 0.2 1.1 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain Chorismate_bind PF00425.13 gi|55377675|ref|YP_135525.1| - 2.8e-80 269.3 0.0 3.5e-80 269.0 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|55377676|ref|YP_135526.1| - 7.9e-30 103.5 0.1 2.2e-29 102.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|55377676|ref|YP_135526.1| - 4.4e-07 29.6 0.0 8.5e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|55377676|ref|YP_135526.1| - 0.00046 19.9 0.0 0.00099 18.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.26 gi|55377677|ref|YP_135527.1| - 3.8e-15 55.3 0.0 6.1e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DPM3 PF08285.6 gi|55377677|ref|YP_135527.1| - 0.54 10.1 6.4 14 5.6 4.5 2.4 1 1 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2823 PF11034.3 gi|55377677|ref|YP_135527.1| - 4.9 7.3 14.3 6 7.0 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2823) DNA_pol_viral_N PF00242.12 gi|55377677|ref|YP_135527.1| - 7.2 5.5 7.1 9 5.2 4.9 1.1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain TRAP_alpha PF03896.11 gi|55377677|ref|YP_135527.1| - 8 5.3 5.9 12 4.7 4.1 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Wzy_C PF04932.10 gi|55377679|ref|YP_135528.1| - 0.0036 17.1 0.3 0.0037 17.0 0.2 1.1 1 0 0 1 1 1 1 O-Antigen ligase DUF3147 PF11345.3 gi|55377679|ref|YP_135528.1| - 0.0059 16.6 2.3 0.0077 16.2 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) GPDPase_memb PF10110.4 gi|55377679|ref|YP_135528.1| - 0.32 10.4 5.1 0.48 9.8 3.6 1.3 1 1 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase ECH PF00378.15 gi|55377678|ref|YP_135529.1| - 8.8e-50 169.1 0.0 2e-39 135.1 0.0 2.1 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase family CAP PF00188.21 gi|55377678|ref|YP_135529.1| - 0.12 12.9 0.0 13 6.2 0.0 2.6 2 1 1 3 3 3 0 Cysteine-rich secretory protein family MarR PF01047.17 gi|55377680|ref|YP_135530.1| - 0.00023 20.7 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|55377680|ref|YP_135530.1| - 0.0003 20.5 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|55377680|ref|YP_135530.1| - 0.0035 17.6 0.0 0.0059 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3504 PF12012.3 gi|55377680|ref|YP_135530.1| - 0.02 14.6 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3504) MarR_2 PF12802.2 gi|55377680|ref|YP_135530.1| - 0.034 13.8 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|55377680|ref|YP_135530.1| - 0.056 13.1 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AMP-binding PF00501.23 gi|55377681|ref|YP_135531.1| - 1.6e-77 260.6 2.9 1.9e-77 260.4 2.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55377681|ref|YP_135531.1| - 1.2e-18 67.8 1.3 4.8e-18 65.8 0.9 2.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE PF01188.16 gi|55377682|ref|YP_135532.1| - 9.9e-16 58.0 2.6 1e-15 58.0 0.3 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|55377682|ref|YP_135532.1| - 1.4e-12 47.5 0.8 3.5e-12 46.2 0.5 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55377682|ref|YP_135532.1| - 9e-05 22.4 1.2 0.0024 17.8 0.2 3.0 2 1 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|55377683|ref|YP_135533.1| - 4.3e-36 124.4 21.9 5.2e-36 124.1 15.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family AMP-binding PF00501.23 gi|55377684|ref|YP_135534.1| - 8.7e-86 287.9 0.5 1e-85 287.6 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55377684|ref|YP_135534.1| - 2.1e-17 63.8 0.1 1.4e-16 61.1 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.1 gi|55377685|ref|YP_135535.1| - 1.2e-45 154.1 0.1 7.5e-28 96.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|55377685|ref|YP_135535.1| - 2.7e-21 75.6 3.9 6.4e-11 42.2 0.1 3.4 3 1 1 4 4 3 2 PAS fold HATPase_c PF02518.21 gi|55377685|ref|YP_135535.1| - 3.4e-21 75.0 0.0 9.7e-21 73.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|55377685|ref|YP_135535.1| - 7.7e-21 73.9 0.0 3.2e-10 39.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|55377685|ref|YP_135535.1| - 1.3e-19 70.2 0.8 6.7e-19 67.9 0.0 2.6 4 0 0 4 4 4 1 Response regulator receiver domain PAS_3 PF08447.6 gi|55377685|ref|YP_135535.1| - 3.7e-17 62.1 0.2 2.1e-10 40.5 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|55377685|ref|YP_135535.1| - 4.6e-13 48.5 0.0 8.1e-06 25.5 0.0 3.3 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|55377685|ref|YP_135535.1| - 8e-13 48.6 0.0 3.2e-12 46.6 0.0 2.1 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|55377685|ref|YP_135535.1| - 2.4e-10 40.2 2.7 4.5e-10 39.3 0.9 2.4 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55377685|ref|YP_135535.1| - 1.1e-09 38.8 1.7 3.3e-09 37.3 0.3 2.5 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.2 gi|55377685|ref|YP_135535.1| - 2.4e-05 24.3 3.3 0.0018 18.2 0.0 4.2 4 1 0 4 4 4 1 PAS fold HATPase_c_3 PF13589.1 gi|55377685|ref|YP_135535.1| - 0.00037 20.1 0.0 0.0011 18.6 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|55377685|ref|YP_135535.1| - 0.00073 19.6 0.0 0.047 13.8 0.0 2.8 2 0 0 2 2 2 1 GAF domain PLAC9 PF15205.1 gi|55377685|ref|YP_135535.1| - 0.052 13.8 0.0 0.21 11.8 0.0 2.0 1 0 0 1 1 1 0 Placenta-specific protein 9 DUF2576 PF10845.3 gi|55377686|ref|YP_135536.1| - 0.11 11.6 0.4 0.19 10.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) CDC45 PF02724.9 gi|55377686|ref|YP_135536.1| - 0.13 10.3 0.2 0.15 10.0 0.2 1.1 1 0 0 1 1 1 0 CDC45-like protein Pex19 PF04614.7 gi|55377686|ref|YP_135536.1| - 1.8 8.1 6.1 0.4 10.2 2.2 1.4 2 0 0 2 2 2 0 Pex19 protein family SGL PF08450.7 gi|55377687|ref|YP_135537.1| - 3.4e-09 36.4 3.3 3.2e-05 23.4 0.2 2.8 1 1 1 3 3 3 2 SMP-30/Gluconolaconase/LRE-like region GSDH PF07995.6 gi|55377687|ref|YP_135537.1| - 0.0025 16.9 0.1 1.4 7.8 0.0 3.1 2 1 0 3 3 3 2 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|55377687|ref|YP_135537.1| - 0.097 12.6 9.0 44 4.2 0.0 5.1 4 1 1 5 5 5 0 NHL repeat SBBP PF06739.6 gi|55377687|ref|YP_135537.1| - 0.28 10.9 2.8 17 5.2 0.2 2.7 2 0 0 2 2 2 0 Beta-propeller repeat DUF318 PF03773.8 gi|55377688|ref|YP_135538.1| - 0.066 12.1 1.4 0.076 11.9 0.9 1.0 1 0 0 1 1 1 0 Predicted permease Glyco_hydro_2 PF00703.16 gi|55377689|ref|YP_135539.1| - 0.0028 18.0 0.7 0.45 10.9 0.2 2.6 2 1 0 2 2 2 2 Glycosyl hydrolases family 2 CARDB PF07705.6 gi|55377689|ref|YP_135539.1| - 0.007 16.4 1.2 0.046 13.7 0.0 2.3 2 0 0 2 2 2 1 CARDB Transglut_C PF00927.17 gi|55377689|ref|YP_135539.1| - 0.0075 16.2 0.0 0.56 10.2 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain DUF2797 PF10977.3 gi|55377690|ref|YP_135540.1| - 0.00011 21.9 0.1 0.00011 21.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) PBP PF01161.15 gi|55377691|ref|YP_135541.1| - 3.9e-31 107.8 0.1 5.9e-31 107.2 0.1 1.3 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Epimerase PF01370.16 gi|55377692|ref|YP_135542.1| - 1.3e-49 168.7 0.0 1.5e-49 168.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55377692|ref|YP_135542.1| - 1.6e-22 79.7 0.0 2e-22 79.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|55377692|ref|YP_135542.1| - 2.2e-19 69.4 0.0 9.4e-19 67.4 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|55377692|ref|YP_135542.1| - 4.6e-18 64.8 0.0 5.9e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|55377692|ref|YP_135542.1| - 8.9e-16 58.4 0.0 1.2e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|55377692|ref|YP_135542.1| - 1.8e-13 50.0 0.0 2.5e-08 33.1 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|55377692|ref|YP_135542.1| - 1.9e-06 27.8 0.3 5e-06 26.5 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|55377692|ref|YP_135542.1| - 6.5e-06 26.1 0.7 1.7e-05 24.7 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain Ldh_1_N PF00056.18 gi|55377692|ref|YP_135542.1| - 0.0048 16.7 0.1 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|55377692|ref|YP_135542.1| - 0.0054 16.0 0.0 0.011 15.0 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family DapB_N PF01113.15 gi|55377692|ref|YP_135542.1| - 0.01 15.7 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|55377692|ref|YP_135542.1| - 0.036 13.0 0.3 0.051 12.5 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|55377692|ref|YP_135542.1| - 0.066 12.8 0.0 0.81 9.3 0.1 2.3 2 1 0 2 2 2 0 KR domain Thioredoxin_4 PF13462.1 gi|55377693|ref|YP_135543.1| - 3.2e-30 105.2 0.0 4.1e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|55377693|ref|YP_135543.1| - 1e-10 41.4 1.5 1.5e-08 34.4 1.0 2.2 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|55377693|ref|YP_135543.1| - 0.00087 19.4 0.0 0.0021 18.2 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Trm56 PF01994.11 gi|55377694|ref|YP_135544.1| - 4.4e-47 158.7 0.0 5.9e-47 158.3 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Glyco_transf_28 PF03033.15 gi|55377694|ref|YP_135544.1| - 0.026 14.2 0.1 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Sulfatase PF00884.18 gi|55377695|ref|YP_135545.1| - 1.8e-35 122.6 0.1 2.4e-35 122.2 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55377695|ref|YP_135545.1| - 1.7e-13 50.6 1.9 1.5e-07 31.0 0.2 2.3 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|55377695|ref|YP_135545.1| - 2.9e-06 26.0 0.0 8.9e-05 21.0 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|55377695|ref|YP_135545.1| - 0.0013 17.6 0.1 0.0022 16.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DHFR_1 PF00186.14 gi|55377696|ref|YP_135546.1| - 1.1e-35 122.6 0.0 2.2e-35 121.6 0.0 1.4 1 1 0 1 1 1 1 Dihydrofolate reductase TFIIS_C PF01096.13 gi|55377697|ref|YP_135547.1| - 0.0051 16.4 2.0 0.0063 16.1 0.0 1.9 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-C3HC4_3 PF13920.1 gi|55377697|ref|YP_135547.1| - 0.098 12.3 1.5 0.14 11.8 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2_6 PF13912.1 gi|55377697|ref|YP_135547.1| - 0.28 11.1 0.1 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|55377697|ref|YP_135547.1| - 0.56 10.1 3.3 2 8.4 2.3 1.8 1 1 0 1 1 1 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|55377697|ref|YP_135547.1| - 1.1 8.9 5.4 1.4 8.6 0.2 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIE_alpha PF02002.12 gi|55377698|ref|YP_135548.1| - 6.2e-21 73.8 0.8 1.3e-20 72.8 0.1 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|55377698|ref|YP_135548.1| - 0.0022 17.8 0.1 0.0067 16.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Desulfoferrod_N PF06397.7 gi|55377698|ref|YP_135548.1| - 0.0023 17.2 0.9 1.6 8.1 0.1 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|55377698|ref|YP_135548.1| - 0.0085 15.5 2.7 0.22 11.0 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|55377698|ref|YP_135548.1| - 0.01 15.5 0.5 0.015 14.9 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|55377698|ref|YP_135548.1| - 0.013 15.3 0.6 0.022 14.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_6 PF13912.1 gi|55377698|ref|YP_135548.1| - 0.018 14.9 1.3 0.89 9.5 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|55377698|ref|YP_135548.1| - 0.029 13.7 2.8 3.1 7.2 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|55377698|ref|YP_135548.1| - 0.038 13.9 3.8 0.27 11.2 2.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55377698|ref|YP_135548.1| - 0.069 12.9 1.7 8 6.3 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-HYPF PF07503.7 gi|55377698|ref|YP_135548.1| - 0.075 12.4 0.3 5.9 6.4 0.0 2.5 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|55377698|ref|YP_135548.1| - 0.076 12.8 2.9 1.4 8.8 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|55377698|ref|YP_135548.1| - 0.12 12.1 0.6 0.33 10.7 0.4 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|55377698|ref|YP_135548.1| - 0.21 11.9 1.8 12 6.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|55377698|ref|YP_135548.1| - 0.25 10.5 2.1 2.1 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|55377698|ref|YP_135548.1| - 0.26 11.0 4.1 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|55377698|ref|YP_135548.1| - 0.31 10.7 1.6 2.6 7.7 0.6 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|55377698|ref|YP_135548.1| - 0.41 10.3 2.9 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|55377698|ref|YP_135548.1| - 3.1 7.5 4.9 5.4 6.8 0.2 2.6 3 0 0 3 3 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|55377698|ref|YP_135548.1| - 9.3 6.4 7.8 18 5.5 2.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2110 PF09883.4 gi|55377699|ref|YP_135549.1| - 9.9e-92 306.6 0.0 1.2e-91 306.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LPAM_1 PF08139.7 gi|55377700|ref|YP_135550.1| - 0.085 13.1 0.7 0.17 12.1 0.5 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site CcmD PF04995.9 gi|55377700|ref|YP_135550.1| - 0.17 11.6 0.2 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Nop PF01798.13 gi|55377701|ref|YP_135551.1| - 2.8e-40 137.0 0.1 4.1e-40 136.5 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain Fibrillarin PF01269.12 gi|55377702|ref|YP_135552.1| - 9.2e-58 194.8 0.0 1.1e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.8 gi|55377703|ref|YP_135553.1| - 3.4e-76 256.1 0.1 4e-76 255.8 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|55377703|ref|YP_135553.1| - 0.0041 16.7 0.1 0.029 13.9 0.1 2.0 1 1 0 1 1 1 1 Putative amidoligase enzyme GCS PF03074.11 gi|55377703|ref|YP_135553.1| - 0.038 13.0 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase Gln-synt_C PF00120.19 gi|55377703|ref|YP_135553.1| - 0.11 11.6 0.4 3.6 6.6 0.0 3.0 3 1 0 3 3 3 0 Glutamine synthetase, catalytic domain TrmB PF01978.14 gi|55377704|ref|YP_135554.1| - 3.4e-08 33.0 0.1 5e-08 32.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|55377704|ref|YP_135554.1| - 1.6e-06 27.7 0.2 3.3e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55377704|ref|YP_135554.1| - 2.8e-06 26.6 0.0 4.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|55377704|ref|YP_135554.1| - 5.8e-05 22.5 0.1 9.5e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|55377704|ref|YP_135554.1| - 6.7e-05 22.2 0.2 0.00016 21.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|55377704|ref|YP_135554.1| - 9.8e-05 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|55377704|ref|YP_135554.1| - 0.00015 21.2 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|55377704|ref|YP_135554.1| - 0.00045 19.8 0.0 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|55377704|ref|YP_135554.1| - 0.0034 17.0 0.2 0.0062 16.1 0.1 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|55377704|ref|YP_135554.1| - 0.0035 17.4 0.0 0.006 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|55377704|ref|YP_135554.1| - 0.0056 16.9 0.1 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|55377704|ref|YP_135554.1| - 0.0095 15.7 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55377704|ref|YP_135554.1| - 0.071 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RepL PF05732.6 gi|55377704|ref|YP_135554.1| - 0.083 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TMV_coat PF00721.16 gi|55377704|ref|YP_135554.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 Virus coat protein (TMV like) Sigma70_r3 PF04539.11 gi|55377704|ref|YP_135554.1| - 0.21 11.4 0.1 0.21 11.4 0.1 2.8 3 0 0 3 3 3 0 Sigma-70 region 3 CTP_transf_2 PF01467.21 gi|55377705|ref|YP_135555.1| - 1.2e-12 48.1 0.2 1.2e-10 41.6 0.1 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|55377705|ref|YP_135555.1| - 0.0047 16.5 0.1 0.018 14.6 0.0 1.9 2 0 0 2 2 2 1 FAD synthetase TFIIB PF00382.14 gi|55377706|ref|YP_135556.1| - 3.8e-06 26.5 0.3 6.2e-06 25.9 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.1 gi|55377706|ref|YP_135556.1| - 0.00049 20.0 0.0 0.00084 19.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|55377706|ref|YP_135556.1| - 0.0081 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|55377706|ref|YP_135556.1| - 0.044 13.3 0.2 0.072 12.6 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55377706|ref|YP_135556.1| - 0.055 12.7 0.0 0.087 12.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_19 PF12844.2 gi|55377708|ref|YP_135558.1| - 0.00014 21.8 0.0 0.0003 20.7 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|55377708|ref|YP_135558.1| - 0.00044 20.4 1.2 0.00066 19.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55377708|ref|YP_135558.1| - 0.0022 17.7 0.1 0.0035 17.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix DUF4048 PF13257.1 gi|55377708|ref|YP_135558.1| - 0.058 13.0 2.7 0.08 12.5 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4048) COPR5 PF15340.1 gi|55377708|ref|YP_135558.1| - 0.21 11.9 3.2 0.29 11.5 2.2 1.2 1 0 0 1 1 1 0 Cooperator of PRMT5 family Acyl-CoA_dh_1 PF00441.19 gi|55377709|ref|YP_135559.1| - 5.5e-59 198.5 4.1 9.1e-59 197.8 2.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55377709|ref|YP_135559.1| - 2.4e-29 102.3 5.0 4.8e-29 101.3 3.4 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55377709|ref|YP_135559.1| - 2.7e-28 98.8 0.6 1.2e-27 96.6 0.0 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55377709|ref|YP_135559.1| - 1.5e-21 75.6 0.0 3.9e-21 74.3 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|55377709|ref|YP_135559.1| - 0.00022 20.7 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 2 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.1 gi|55377710|ref|YP_135560.1| - 5.6e-12 46.2 0.0 6.7e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55377710|ref|YP_135560.1| - 7.2e-08 32.0 0.1 2.1e-07 30.5 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|55377710|ref|YP_135560.1| - 6.6e-07 29.9 0.0 7.8e-07 29.7 0.0 1.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RseC_MucC PF04246.7 gi|55377711|ref|YP_135561.1| - 0.12 11.9 3.0 0.12 11.9 2.1 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Syndecan PF01034.15 gi|55377711|ref|YP_135561.1| - 0.4 10.3 3.8 0.17 11.5 1.2 1.5 1 1 1 2 2 2 0 Syndecan domain Pantoate_transf PF02548.10 gi|55377712|ref|YP_135562.1| - 2.9e-97 324.8 0.3 3.3e-97 324.6 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|55377712|ref|YP_135562.1| - 1.7e-08 34.0 3.4 1.1e-07 31.3 0.6 2.2 1 1 0 2 2 2 2 Phosphoenolpyruvate phosphomutase COX2 PF00116.15 gi|55377713|ref|YP_135563.1| - 1.9e-20 72.8 0.5 1e-19 70.5 0.3 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|55377713|ref|YP_135563.1| - 6.3e-07 29.2 0.0 1.2e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain COX2_TM PF02790.10 gi|55377713|ref|YP_135563.1| - 2.2e-05 24.3 0.0 3.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF3377 PF11857.3 gi|55377713|ref|YP_135563.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) TAT_signal PF10518.4 gi|55377713|ref|YP_135563.1| - 9.3 6.5 10.0 0.25 11.4 1.6 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence COX1 PF00115.15 gi|55377714|ref|YP_135564.1| - 1.8e-141 471.7 55.9 1.8e-141 471.7 38.7 1.9 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF4383 PF14325.1 gi|55377715|ref|YP_135565.1| - 0.16 12.0 0.3 0.16 12.0 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) COX3 PF00510.13 gi|55377716|ref|YP_135566.1| - 1.1e-37 129.8 6.0 2.1e-37 128.9 4.2 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III BATS PF06968.8 gi|55377717|ref|YP_135567.1| - 1.4e-23 82.5 0.0 2.1e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain ELFV_dehydrog PF00208.16 gi|55377718|ref|YP_135568.1| - 0.00045 19.8 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|55377718|ref|YP_135568.1| - 0.0025 18.3 3.0 0.27 11.7 0.0 2.8 3 0 0 3 3 3 2 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|55377718|ref|YP_135568.1| - 0.013 14.4 0.2 0.3 10.0 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase DapB_N PF01113.15 gi|55377718|ref|YP_135568.1| - 0.093 12.6 0.3 0.7 9.8 0.0 2.4 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Aminotran_1_2 PF00155.16 gi|55377719|ref|YP_135569.1| - 4e-58 197.0 0.0 4.6e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|55377719|ref|YP_135569.1| - 0.0002 20.4 0.5 0.00047 19.3 0.3 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|55377719|ref|YP_135569.1| - 0.00031 19.1 0.0 0.00048 18.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|55377719|ref|YP_135569.1| - 0.14 10.5 0.0 0.19 10.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DRTGG PF07085.7 gi|55377721|ref|YP_135571.1| - 3.7e-30 103.6 0.6 1.7e-29 101.5 0.1 2.1 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.1 gi|55377721|ref|YP_135571.1| - 8e-30 103.9 0.0 5.4e-29 101.2 0.0 2.3 2 1 2 4 4 4 1 AAA domain CbiA PF01656.18 gi|55377721|ref|YP_135571.1| - 0.0068 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|55377721|ref|YP_135571.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Hpr_kinase_N PF02603.11 gi|55377721|ref|YP_135571.1| - 0.08 12.6 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 HPr Serine kinase N terminus ATP-grasp_5 PF13549.1 gi|55377722|ref|YP_135572.1| - 1.2e-71 240.4 0.5 2.6e-71 239.3 0.4 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|55377722|ref|YP_135572.1| - 3.2e-51 172.5 0.2 7.5e-51 171.3 0.2 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|55377722|ref|YP_135572.1| - 6.2e-23 81.1 1.7 1.4e-22 80.0 0.2 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|55377722|ref|YP_135572.1| - 3.1e-15 56.4 1.5 1.2e-14 54.5 1.0 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|55377722|ref|YP_135572.1| - 1.6e-05 24.3 0.1 3.7e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|55377722|ref|YP_135572.1| - 0.00053 20.4 0.2 0.0042 17.6 0.1 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF1025 PF06262.6 gi|55377723|ref|YP_135573.1| - 0.023 14.4 0.1 0.041 13.6 0.0 1.5 1 1 0 1 1 1 0 Possibl zinc metallo-peptidase Ferritin PF00210.19 gi|55377724|ref|YP_135574.1| - 2.5e-29 101.8 6.2 3e-29 101.5 4.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|55377724|ref|YP_135574.1| - 0.00021 21.5 2.4 0.0077 16.4 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) UvrD-helicase PF00580.16 gi|55377724|ref|YP_135574.1| - 0.091 12.0 1.0 0.15 11.3 0.7 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain DUF1451 PF07295.6 gi|55377724|ref|YP_135574.1| - 2.6 7.7 7.5 8 6.2 1.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) DUF2383 PF09537.5 gi|55377726|ref|YP_135576.1| - 0.0065 16.7 1.2 1.7 8.9 0.1 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF2383) PilJ PF13675.1 gi|55377726|ref|YP_135576.1| - 0.0096 16.2 1.5 0.039 14.2 0.7 2.0 2 0 0 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term CorA PF01544.13 gi|55377726|ref|YP_135576.1| - 0.021 13.9 0.2 0.021 13.9 0.2 1.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein TPR_9 PF13371.1 gi|55377726|ref|YP_135576.1| - 0.023 14.5 1.6 0.061 13.1 1.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat CAMP_factor PF07373.6 gi|55377726|ref|YP_135576.1| - 0.032 13.7 0.1 0.11 11.9 0.0 1.9 2 1 1 3 3 3 0 CAMP factor (Cfa) HsbA PF12296.3 gi|55377726|ref|YP_135576.1| - 0.045 13.5 0.3 0.57 10.0 0.1 2.2 2 0 0 2 2 2 0 Hydrophobic surface binding protein A TPR_14 PF13428.1 gi|55377726|ref|YP_135576.1| - 0.047 14.3 1.4 5.6 7.8 0.2 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF948 PF06103.6 gi|55377726|ref|YP_135576.1| - 0.078 12.8 0.9 0.54 10.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TPR_12 PF13424.1 gi|55377726|ref|YP_135576.1| - 0.081 12.8 0.8 10 6.1 0.0 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat DUF4164 PF13747.1 gi|55377726|ref|YP_135576.1| - 0.14 12.3 7.1 0.33 11.1 2.7 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) TPR_2 PF07719.12 gi|55377726|ref|YP_135576.1| - 0.15 12.0 1.8 44 4.3 0.0 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat MDMPI_N PF11716.3 gi|55377726|ref|YP_135576.1| - 0.33 11.3 7.0 0.18 12.2 2.8 2.0 2 1 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain TPR_16 PF13432.1 gi|55377726|ref|YP_135576.1| - 1.3 9.8 3.9 2.5 8.8 0.6 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat 5_nucleotid_C PF02872.13 gi|55377728|ref|YP_135578.1| - 2.4e-47 160.7 0.2 5.6e-47 159.5 0.2 1.7 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain TroA PF01297.12 gi|55377728|ref|YP_135578.1| - 0.0045 16.2 0.3 0.01 15.1 0.1 1.6 2 0 0 2 2 2 1 Periplasmic solute binding protein family DUF35 PF01796.12 gi|55377729|ref|YP_135579.1| - 6.8e-07 29.4 0.5 1e-06 28.8 0.4 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|55377729|ref|YP_135579.1| - 0.067 13.1 0.3 0.11 12.4 0.2 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.13 gi|55377730|ref|YP_135580.1| - 7.3e-09 35.1 1.9 2.4e-08 33.4 0.3 2.4 3 0 0 3 3 3 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|55377730|ref|YP_135580.1| - 0.006 15.6 0.0 0.013 14.4 0.0 1.6 1 0 0 1 1 1 1 Thiolase, N-terminal domain UpxZ PF06603.6 gi|55377731|ref|YP_135581.1| - 0.076 13.0 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists Peripla_BP_2 PF01497.13 gi|55377732|ref|YP_135582.1| - 5e-19 68.3 0.0 7.1e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TF_Zn_Ribbon PF08271.7 gi|55377733|ref|YP_135583.1| - 0.0056 15.9 0.2 0.0098 15.1 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Stc1 PF12898.2 gi|55377733|ref|YP_135583.1| - 0.01 15.9 0.2 0.013 15.5 0.1 1.2 1 0 0 1 1 1 1 Stc1 domain zinc_ribbon_4 PF13717.1 gi|55377733|ref|YP_135583.1| - 0.031 13.9 0.4 2.2 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TusA PF01206.12 gi|55377733|ref|YP_135583.1| - 0.042 13.4 0.1 0.052 13.1 0.0 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA HrpB4 PF09502.5 gi|55377733|ref|YP_135583.1| - 0.053 12.6 0.1 0.059 12.5 0.1 1.0 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) zinc_ribbon_5 PF13719.1 gi|55377733|ref|YP_135583.1| - 0.058 12.9 1.6 2.3 7.8 0.2 2.1 1 1 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|55377733|ref|YP_135583.1| - 0.059 13.0 0.7 0.41 10.3 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|55377733|ref|YP_135583.1| - 0.063 13.2 1.4 5.7 6.9 0.3 2.5 2 1 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|55377733|ref|YP_135583.1| - 0.072 12.9 2.0 0.25 11.2 1.5 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|55377733|ref|YP_135583.1| - 0.078 12.7 1.1 0.53 10.1 1.0 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55377733|ref|YP_135583.1| - 0.1 12.3 3.5 0.47 10.2 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|55377733|ref|YP_135583.1| - 0.12 12.1 1.4 0.25 11.1 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|55377733|ref|YP_135583.1| - 0.14 11.9 1.1 0.28 10.9 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|55377733|ref|YP_135583.1| - 0.19 12.0 0.6 9.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Lar_restr_allev PF14354.1 gi|55377733|ref|YP_135583.1| - 0.2 11.9 1.9 0.31 11.3 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_2 PF14445.1 gi|55377733|ref|YP_135583.1| - 0.22 11.4 1.5 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 ADK_lid PF05191.9 gi|55377733|ref|YP_135583.1| - 0.23 11.1 1.8 0.46 10.2 1.2 1.5 1 1 0 1 1 1 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|55377733|ref|YP_135583.1| - 0.29 11.0 3.8 1.6 8.6 2.7 1.9 1 1 0 1 1 1 0 Rubredoxin UPF0547 PF10571.4 gi|55377733|ref|YP_135583.1| - 0.94 9.2 3.1 2.9 7.6 2.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OAD_gamma PF04277.8 gi|55377734|ref|YP_135584.1| - 0.047 14.0 2.5 0.047 14.0 1.7 1.6 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF2782 PF11191.3 gi|55377734|ref|YP_135584.1| - 0.053 13.5 0.5 0.088 12.7 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2782) Carboxyl_trans PF01039.17 gi|55377735|ref|YP_135585.1| - 3.8e-198 658.8 0.0 4.4e-198 658.6 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|55377735|ref|YP_135585.1| - 0.00088 18.5 0.0 0.0022 17.2 0.0 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) adh_short PF00106.20 gi|55377736|ref|YP_135586.1| - 8e-42 142.9 1.3 1e-41 142.6 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55377736|ref|YP_135586.1| - 7.3e-22 78.3 0.0 8.3e-22 78.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55377736|ref|YP_135586.1| - 8.8e-22 77.6 0.4 1.3e-21 77.1 0.3 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55377736|ref|YP_135586.1| - 0.029 13.8 0.3 0.041 13.2 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family HAD PF12710.2 gi|55377736|ref|YP_135586.1| - 0.083 13.0 0.1 0.37 10.9 0.1 1.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase RGP PF03214.8 gi|55377737|ref|YP_135587.1| - 7.7e-17 61.0 0.0 9.2e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_8 PF13416.1 gi|55377738|ref|YP_135588.1| - 1.7e-17 64.0 0.1 2.3e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|55377738|ref|YP_135588.1| - 1.2e-15 57.5 0.0 1.6e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55377738|ref|YP_135588.1| - 1.8e-06 27.9 0.1 4e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|55377738|ref|YP_135588.1| - 2.3e-05 24.1 0.4 0.00019 21.1 0.3 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55377738|ref|YP_135588.1| - 0.072 13.1 3.7 0.27 11.3 2.6 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|55377739|ref|YP_135589.1| - 8.8e-25 87.2 33.4 1.1e-14 54.3 9.1 3.8 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|55377740|ref|YP_135590.1| - 1.5e-35 122.5 0.0 2.6e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55377740|ref|YP_135590.1| - 2.6e-09 36.9 0.1 1e-08 35.0 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|55377740|ref|YP_135590.1| - 3.5e-07 30.4 0.0 0.0029 17.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55377740|ref|YP_135590.1| - 9.1e-05 22.5 0.1 0.00016 21.6 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|55377740|ref|YP_135590.1| - 0.0018 18.4 0.1 0.021 15.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|55377740|ref|YP_135590.1| - 0.0023 18.0 0.6 0.011 15.9 0.4 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|55377740|ref|YP_135590.1| - 0.0043 15.8 0.0 0.0062 15.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|55377740|ref|YP_135590.1| - 0.0057 16.5 0.0 0.53 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|55377740|ref|YP_135590.1| - 0.0085 15.9 0.2 0.092 12.6 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|55377740|ref|YP_135590.1| - 0.016 15.2 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|55377740|ref|YP_135590.1| - 0.025 13.6 0.0 0.094 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|55377740|ref|YP_135590.1| - 0.029 13.5 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|55377740|ref|YP_135590.1| - 0.071 12.2 0.2 0.45 9.6 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|55377740|ref|YP_135590.1| - 0.096 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|55377740|ref|YP_135590.1| - 0.13 11.7 0.0 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|55377740|ref|YP_135590.1| - 0.13 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|55377740|ref|YP_135590.1| - 0.19 10.5 0.3 0.33 9.7 0.1 1.4 1 1 0 1 1 1 0 NB-ARC domain PMT_2 PF13231.1 gi|55377741|ref|YP_135591.1| - 2.4e-10 40.5 9.1 2.4e-10 40.5 6.3 2.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|55377741|ref|YP_135591.1| - 0.067 12.1 0.7 0.1 11.5 0.5 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family PMT PF02366.13 gi|55377741|ref|YP_135591.1| - 0.08 12.2 12.6 0.024 14.0 5.4 2.2 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.1 gi|55377742|ref|YP_135592.1| - 2.8e-16 59.8 0.4 6.3e-16 58.7 0.0 1.7 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|55377742|ref|YP_135592.1| - 0.00049 19.8 3.9 0.0011 18.8 2.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.21 gi|55377743|ref|YP_135593.1| - 2e-22 79.6 0.0 2.5e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377743|ref|YP_135593.1| - 3.3e-06 27.0 0.2 4.3e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF1724 PF08350.5 gi|55377744|ref|YP_135594.1| - 1.6e-13 49.9 0.0 3.2e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|55377744|ref|YP_135594.1| - 0.0076 15.9 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|55377744|ref|YP_135594.1| - 0.028 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.14 gi|55377744|ref|YP_135594.1| - 0.044 13.2 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_5 PF01022.15 gi|55377744|ref|YP_135594.1| - 0.064 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF505 PF04458.7 gi|55377744|ref|YP_135594.1| - 0.093 10.8 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Regulator_TrmB PF11495.3 gi|55377745|ref|YP_135595.1| - 2.2e-71 239.5 0.6 2.7e-71 239.2 0.2 1.3 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|55377745|ref|YP_135595.1| - 2.2e-20 72.1 0.0 4.5e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|55377745|ref|YP_135595.1| - 1.5e-05 24.7 0.0 3.2e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55377745|ref|YP_135595.1| - 0.0002 20.9 0.1 0.0013 18.3 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|55377745|ref|YP_135595.1| - 0.0007 19.1 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|55377745|ref|YP_135595.1| - 0.0011 18.5 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|55377745|ref|YP_135595.1| - 0.0049 16.7 0.0 0.009 15.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|55377745|ref|YP_135595.1| - 0.0073 16.3 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|55377745|ref|YP_135595.1| - 0.025 13.9 0.0 0.082 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|55377745|ref|YP_135595.1| - 0.036 13.5 0.0 0.085 12.3 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_9 PF08221.6 gi|55377745|ref|YP_135595.1| - 0.082 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|55377745|ref|YP_135595.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) SBP_bac_8 PF13416.1 gi|55377746|ref|YP_135596.1| - 3.6e-22 79.4 9.3 6.1e-22 78.6 6.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55377746|ref|YP_135596.1| - 1.9e-17 63.9 7.1 2.7e-17 63.4 4.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55377746|ref|YP_135596.1| - 0.0054 16.6 6.5 0.015 15.2 4.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ADH_N PF08240.7 gi|55377747|ref|YP_135597.1| - 2e-10 40.4 0.0 3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain GFO_IDH_MocA PF01408.17 gi|55377748|ref|YP_135598.1| - 1.8e-26 92.9 0.2 3.5e-26 92.0 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55377748|ref|YP_135598.1| - 7e-08 32.2 0.1 1.3e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|55377748|ref|YP_135598.1| - 0.00051 20.3 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|55377748|ref|YP_135598.1| - 0.00089 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|55377748|ref|YP_135598.1| - 0.018 15.4 0.4 0.032 14.6 0.3 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55377748|ref|YP_135598.1| - 0.018 14.1 0.1 0.12 11.5 0.0 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|55377748|ref|YP_135598.1| - 0.021 14.1 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|55377748|ref|YP_135598.1| - 0.024 15.1 0.1 0.045 14.2 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain NAD_binding_2 PF03446.10 gi|55377748|ref|YP_135598.1| - 0.047 13.5 0.0 0.091 12.5 0.0 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase COX14 PF14880.1 gi|55377749|ref|YP_135599.1| - 0.074 12.6 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Cytochrome oxidase c assembly YMF19 PF02326.10 gi|55377749|ref|YP_135599.1| - 0.12 12.9 0.0 0.13 12.8 0.0 1.1 1 0 0 1 1 1 0 Plant ATP synthase F0 DUF3902 PF13042.1 gi|55377749|ref|YP_135599.1| - 0.12 11.6 1.6 0.13 11.5 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3902) HDAC4_Gln PF12203.3 gi|55377749|ref|YP_135599.1| - 1.8 8.5 9.6 2.3 8.2 6.6 1.1 1 0 0 1 1 1 0 Glutamine rich N terminal domain of histone deacetylase 4 ABC_tran PF00005.22 gi|55377750|ref|YP_135600.1| - 2.9e-33 115.0 0.0 5e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377750|ref|YP_135600.1| - 3.6e-10 40.2 0.0 1.9e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55377750|ref|YP_135600.1| - 5e-05 22.6 0.3 0.03 13.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|55377750|ref|YP_135600.1| - 8.5e-05 21.7 0.0 0.003 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|55377750|ref|YP_135600.1| - 0.00025 21.0 0.0 2.7 8.1 0.0 4.0 3 1 0 3 3 3 1 TOBE domain AAA_17 PF13207.1 gi|55377750|ref|YP_135600.1| - 0.00056 20.7 0.2 0.0038 18.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|55377750|ref|YP_135600.1| - 0.00089 18.7 0.0 0.0019 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE_2 PF08402.5 gi|55377750|ref|YP_135600.1| - 0.0014 18.6 0.0 0.01 15.8 0.0 2.5 2 1 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|55377750|ref|YP_135600.1| - 0.0054 16.8 0.2 0.049 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|55377750|ref|YP_135600.1| - 0.0079 15.6 0.1 0.081 12.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|55377750|ref|YP_135600.1| - 0.0098 16.0 0.0 0.027 14.6 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|55377750|ref|YP_135600.1| - 0.01 15.8 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.10 gi|55377750|ref|YP_135600.1| - 0.013 14.2 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|55377750|ref|YP_135600.1| - 0.014 15.5 0.3 0.17 12.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55377750|ref|YP_135600.1| - 0.015 15.0 0.0 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|55377750|ref|YP_135600.1| - 0.021 15.1 0.1 0.038 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55377750|ref|YP_135600.1| - 0.022 14.1 0.6 0.043 13.2 0.1 1.8 2 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|55377750|ref|YP_135600.1| - 0.023 13.8 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|55377750|ref|YP_135600.1| - 0.031 14.5 0.1 0.27 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|55377750|ref|YP_135600.1| - 0.034 14.0 0.1 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|55377750|ref|YP_135600.1| - 0.083 12.8 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|55377750|ref|YP_135600.1| - 0.11 12.1 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|55377751|ref|YP_135601.1| - 2.9e-11 43.2 22.3 2.9e-11 43.2 15.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55377752|ref|YP_135602.1| - 1.3e-13 50.8 21.5 1.3e-13 50.8 14.9 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|55377753|ref|YP_135603.1| - 1.6e-18 67.4 0.4 1.6e-18 67.4 0.3 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55377753|ref|YP_135603.1| - 1.3e-14 54.6 1.0 4e-14 53.0 0.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55377753|ref|YP_135603.1| - 0.007 16.2 5.5 0.007 16.2 3.8 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence GIT_SHD PF08518.6 gi|55377753|ref|YP_135603.1| - 0.19 11.1 0.5 0.41 10.0 0.0 1.7 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT Regulator_TrmB PF11495.3 gi|55377754|ref|YP_135604.1| - 1.9e-76 256.1 0.5 2.4e-76 255.8 0.4 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|55377754|ref|YP_135604.1| - 1.4e-14 53.5 0.0 2.8e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55377754|ref|YP_135604.1| - 0.0024 17.4 0.0 0.0071 15.9 0.0 1.8 2 0 0 2 2 2 1 MarR family PadR PF03551.9 gi|55377754|ref|YP_135604.1| - 0.0064 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|55377754|ref|YP_135604.1| - 0.015 14.6 0.0 0.031 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|55377754|ref|YP_135604.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Aldo_ket_red PF00248.16 gi|55377755|ref|YP_135605.1| - 5.3e-80 268.2 0.0 6.6e-80 267.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF3039 PF11238.3 gi|55377756|ref|YP_135606.1| - 0.025 14.0 1.7 0.072 12.5 1.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) DNA_ligase_ZBD PF03119.11 gi|55377756|ref|YP_135606.1| - 0.032 13.9 1.6 0.032 13.9 1.1 2.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TerY-C PF15616.1 gi|55377756|ref|YP_135606.1| - 0.043 13.7 0.5 0.072 13.0 0.4 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain DZR PF12773.2 gi|55377756|ref|YP_135606.1| - 0.13 12.1 2.7 0.36 10.6 1.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|55377756|ref|YP_135606.1| - 0.15 12.0 3.2 12 5.9 0.8 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DUF3188 PF11384.3 gi|55377756|ref|YP_135606.1| - 0.28 10.8 3.7 0.52 9.9 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) Rad50_zn_hook PF04423.9 gi|55377756|ref|YP_135606.1| - 0.35 10.3 1.7 1.3 8.5 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-RING_3 PF14369.1 gi|55377756|ref|YP_135606.1| - 0.91 9.5 5.9 20 5.2 1.8 2.5 2 0 0 2 2 2 0 zinc-finger Auto_anti-p27 PF06677.7 gi|55377756|ref|YP_135606.1| - 0.96 9.2 3.4 18 5.1 0.2 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Pribosyltran PF00156.22 gi|55377757|ref|YP_135607.1| - 2.1e-24 85.6 0.0 3.2e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|55377757|ref|YP_135607.1| - 0.0018 17.8 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.1 gi|55377757|ref|YP_135607.1| - 0.0027 17.0 0.2 0.023 13.9 0.1 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|55377757|ref|YP_135607.1| - 0.016 15.0 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|55377757|ref|YP_135607.1| - 0.022 14.3 0.1 0.064 12.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|55377757|ref|YP_135607.1| - 0.034 13.4 0.0 0.06 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|55377757|ref|YP_135607.1| - 0.073 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPRTase PF14681.1 gi|55377757|ref|YP_135607.1| - 0.074 12.2 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_38 PF13936.1 gi|55377757|ref|YP_135607.1| - 0.096 12.2 0.0 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Thiolase_N PF00108.18 gi|55377759|ref|YP_135609.1| - 2.3e-14 53.0 1.4 3.7e-13 49.0 0.2 2.2 1 1 1 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|55377759|ref|YP_135609.1| - 2.3e-10 40.4 2.6 2.3e-10 40.4 1.8 2.9 3 1 1 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|55377759|ref|YP_135609.1| - 9e-09 34.8 0.8 1.7e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|55377759|ref|YP_135609.1| - 0.00049 19.9 2.2 0.22 11.3 0.0 3.7 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|55377759|ref|YP_135609.1| - 0.0015 18.1 3.2 0.045 13.4 0.5 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3_binding PF02817.12 gi|55377759|ref|YP_135609.1| - 0.22 11.1 1.7 0.42 10.2 0.0 2.3 2 0 0 2 2 2 0 e3 binding domain DUF35 PF01796.12 gi|55377760|ref|YP_135610.1| - 6.9e-09 35.8 2.1 9.8e-09 35.3 1.5 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|55377760|ref|YP_135610.1| - 0.0046 16.8 2.8 0.0077 16.1 1.9 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.2 gi|55377761|ref|YP_135611.1| - 2.7e-26 92.8 4.9 3.5e-26 92.5 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55377761|ref|YP_135611.1| - 1e-12 48.0 0.1 3.6e-12 46.2 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55377761|ref|YP_135611.1| - 0.00029 20.4 0.1 0.016 14.7 0.1 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|55377761|ref|YP_135611.1| - 0.00054 19.7 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase ArgK PF03308.11 gi|55377762|ref|YP_135612.1| - 1.2e-94 316.0 3.4 1.5e-94 315.7 2.4 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|55377762|ref|YP_135612.1| - 4.9e-08 32.6 1.9 7e-07 28.8 1.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|55377762|ref|YP_135612.1| - 1.7e-06 27.7 0.1 3.7e-06 26.6 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|55377762|ref|YP_135612.1| - 1.9e-05 24.7 2.4 0.00045 20.2 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain SRP54 PF00448.17 gi|55377762|ref|YP_135612.1| - 2e-05 24.1 0.4 4.6e-05 22.9 0.3 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|55377762|ref|YP_135612.1| - 5.6e-05 22.7 0.0 0.00021 20.9 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|55377762|ref|YP_135612.1| - 5.7e-05 23.2 0.2 0.0084 16.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|55377762|ref|YP_135612.1| - 8.5e-05 22.3 0.2 0.00024 20.8 0.0 1.8 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|55377762|ref|YP_135612.1| - 9.2e-05 22.1 1.2 0.00019 21.0 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|55377762|ref|YP_135612.1| - 0.00011 22.9 1.9 0.00063 20.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|55377762|ref|YP_135612.1| - 0.0002 21.0 0.3 0.0002 21.0 0.2 2.9 4 0 0 4 4 3 1 Part of AAA domain GTP_EFTU PF00009.22 gi|55377762|ref|YP_135612.1| - 0.00098 18.6 0.1 0.6 9.5 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|55377762|ref|YP_135612.1| - 0.0036 16.7 0.2 0.0098 15.4 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|55377762|ref|YP_135612.1| - 0.0039 17.4 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter CbiA PF01656.18 gi|55377762|ref|YP_135612.1| - 0.016 14.5 0.2 0.032 13.6 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.17 gi|55377762|ref|YP_135612.1| - 0.017 13.9 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.9 gi|55377762|ref|YP_135612.1| - 0.019 13.9 0.0 0.034 13.1 0.0 1.6 2 0 0 2 2 2 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|55377762|ref|YP_135612.1| - 0.02 14.0 0.1 0.035 13.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|55377762|ref|YP_135612.1| - 0.02 14.5 0.5 0.045 13.4 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|55377762|ref|YP_135612.1| - 0.022 15.0 0.8 0.15 12.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|55377762|ref|YP_135612.1| - 0.029 13.5 0.1 0.068 12.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Peptidase_S41 PF03572.13 gi|55377762|ref|YP_135612.1| - 0.034 13.5 0.6 12 5.2 0.0 2.9 3 0 0 3 3 3 0 Peptidase family S41 KTI12 PF08433.5 gi|55377762|ref|YP_135612.1| - 0.041 13.0 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|55377762|ref|YP_135612.1| - 0.044 13.7 1.9 0.053 13.4 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|55377762|ref|YP_135612.1| - 0.054 13.3 0.3 0.18 11.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|55377762|ref|YP_135612.1| - 0.065 12.7 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|55377762|ref|YP_135612.1| - 0.069 12.8 0.3 0.27 10.8 0.1 2.1 2 0 0 2 2 2 0 NACHT domain AAA PF00004.24 gi|55377762|ref|YP_135612.1| - 0.069 13.3 0.1 0.8 9.9 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|55377762|ref|YP_135612.1| - 0.08 11.5 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|55377762|ref|YP_135612.1| - 0.084 12.7 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain HATPase_c_4 PF13749.1 gi|55377762|ref|YP_135612.1| - 0.088 12.6 0.0 1.8 8.3 0.0 2.6 2 0 0 2 2 2 0 ATP-dependent DNA helicase recG C-terminal Miro PF08477.8 gi|55377762|ref|YP_135612.1| - 0.12 12.9 0.1 0.31 11.5 0.1 1.7 2 0 0 2 2 1 0 Miro-like protein DUF815 PF05673.8 gi|55377762|ref|YP_135612.1| - 0.13 11.1 0.0 0.26 10.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PIF1 PF05970.9 gi|55377762|ref|YP_135612.1| - 0.16 10.9 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_25 PF13481.1 gi|55377762|ref|YP_135612.1| - 0.22 10.9 3.0 0.23 10.8 0.2 2.4 2 1 0 2 2 2 0 AAA domain B12-binding PF02310.14 gi|55377763|ref|YP_135613.1| - 2e-20 72.8 0.6 2.9e-20 72.3 0.4 1.3 1 0 0 1 1 1 1 B12 binding domain TPP_enzyme_N PF02776.13 gi|55377763|ref|YP_135613.1| - 0.11 11.9 0.0 6.3 6.2 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF2304 PF10066.4 gi|55377765|ref|YP_135615.1| - 3.1e-09 36.6 1.3 3.6e-09 36.4 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Tetraspannin PF00335.15 gi|55377765|ref|YP_135615.1| - 0.011 15.0 0.1 0.013 14.7 0.1 1.1 1 0 0 1 1 1 0 Tetraspanin family TSC22 PF01166.13 gi|55377765|ref|YP_135615.1| - 0.077 12.9 0.7 0.11 12.4 0.5 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family DUF373 PF04123.8 gi|55377765|ref|YP_135615.1| - 0.15 11.0 2.8 0.17 10.8 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) 7tm_7 PF08395.7 gi|55377765|ref|YP_135615.1| - 0.22 10.5 3.3 0.35 9.8 2.3 1.4 1 1 0 1 1 1 0 7tm Chemosensory receptor DUF3098 PF11297.3 gi|55377765|ref|YP_135615.1| - 0.46 10.2 3.2 1.2 8.9 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) RseC_MucC PF04246.7 gi|55377765|ref|YP_135615.1| - 4.9 6.7 5.3 13 5.3 0.3 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF3473 PF11959.3 gi|55377766|ref|YP_135616.1| - 5.4e-24 84.1 0.0 7.4e-24 83.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|55377766|ref|YP_135616.1| - 3.8e-23 81.4 0.0 6.2e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase UPF0104 PF03706.8 gi|55377767|ref|YP_135617.1| - 4.2e-13 49.2 28.8 4.9e-13 49.0 19.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) PMT_2 PF13231.1 gi|55377768|ref|YP_135618.1| - 2.1e-13 50.4 11.8 2.1e-13 50.4 8.2 3.2 4 2 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|55377768|ref|YP_135618.1| - 1.7e-07 30.9 11.2 4.3e-07 29.5 7.8 1.8 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.21 gi|55377769|ref|YP_135619.1| - 1.7e-21 76.6 0.0 2.3e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377769|ref|YP_135619.1| - 2.3e-18 66.8 0.3 2.8e-18 66.5 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55377769|ref|YP_135619.1| - 3.6e-10 39.3 0.0 0.0001 21.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|55377769|ref|YP_135619.1| - 7.9e-10 38.7 0.3 1.3e-09 38.0 0.2 1.3 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|55377769|ref|YP_135619.1| - 3e-05 23.3 0.0 5.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|55377769|ref|YP_135619.1| - 0.00078 19.5 0.1 0.0011 19.0 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain MCPsignal PF00015.16 gi|55377770|ref|YP_135620.1| - 7e-52 176.0 71.1 2.1e-49 167.9 22.4 4.1 1 1 3 4 4 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.7 gi|55377770|ref|YP_135620.1| - 1.7e-05 24.5 32.4 0.00082 19.1 2.6 5.8 3 2 3 6 6 6 2 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|55377770|ref|YP_135620.1| - 4.5e-05 23.2 41.2 0.0028 17.4 4.8 5.4 2 1 3 5 5 5 3 Laminin Domain II DUF948 PF06103.6 gi|55377770|ref|YP_135620.1| - 0.00019 21.2 34.8 0.042 13.7 2.2 6.0 3 3 0 5 5 5 2 Bacterial protein of unknown function (DUF948) HAMP PF00672.20 gi|55377770|ref|YP_135620.1| - 0.00096 19.2 0.3 0.00096 19.2 0.2 5.5 4 2 2 6 6 6 1 HAMP domain DHC_N1 PF08385.7 gi|55377770|ref|YP_135620.1| - 0.0044 15.4 6.3 0.034 12.5 0.9 2.4 2 0 0 2 2 2 2 Dynein heavy chain, N-terminal region 1 NPV_P10 PF05531.7 gi|55377770|ref|YP_135620.1| - 0.0051 17.0 26.3 0.075 13.2 0.7 6.1 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|55377770|ref|YP_135620.1| - 0.012 14.1 40.3 0.51 8.7 4.0 3.0 1 1 1 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|55377770|ref|YP_135620.1| - 0.016 12.5 49.4 0.047 11.0 18.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF2365 PF10157.4 gi|55377770|ref|YP_135620.1| - 0.098 12.5 16.4 0.077 12.8 1.4 3.4 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2365) Reo_sigmaC PF04582.7 gi|55377770|ref|YP_135620.1| - 0.13 11.4 31.0 0.13 11.4 7.5 3.4 1 1 2 3 3 3 0 Reovirus sigma C capsid protein DASH_Duo1 PF08651.5 gi|55377770|ref|YP_135620.1| - 0.78 9.3 19.0 3.4 7.3 0.2 6.5 4 2 3 7 7 7 0 DASH complex subunit Duo1 DUF3407 PF11887.3 gi|55377770|ref|YP_135620.1| - 2.6 7.2 12.8 4.4 6.5 2.6 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3407) Mnd1 PF03962.10 gi|55377770|ref|YP_135620.1| - 3 7.4 45.8 0.1 12.2 5.9 3.9 1 1 2 3 3 3 0 Mnd1 family COX14 PF14880.1 gi|55377770|ref|YP_135620.1| - 4 7.1 6.4 0.53 9.9 0.7 2.3 1 1 1 2 2 2 0 Cytochrome oxidase c assembly Spc7 PF08317.6 gi|55377770|ref|YP_135620.1| - 4 6.0 38.9 0.063 11.9 5.3 3.9 2 1 1 4 4 4 0 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|55377770|ref|YP_135620.1| - 5.3 4.6 53.1 0.018 12.7 18.3 2.6 1 1 0 2 2 2 0 Myosin tail DUF4200 PF13863.1 gi|55377770|ref|YP_135620.1| - 7 6.6 39.8 0.29 11.0 0.1 5.2 2 1 3 6 6 6 0 Domain of unknown function (DUF4200) Cauli_AT PF03233.8 gi|55377770|ref|YP_135620.1| - 7.1 6.3 17.6 0.45 10.2 0.2 3.6 2 1 1 4 4 4 0 Aphid transmission protein ISG65-75 PF11727.3 gi|55377770|ref|YP_135620.1| - 7.8 5.4 47.2 0.18 10.8 5.2 4.0 2 1 2 4 4 4 0 Invariant surface glycoprotein MerC PF03203.9 gi|55377771|ref|YP_135621.1| - 0.12 12.7 1.5 0.16 12.3 1.0 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein DUF3925 PF13063.1 gi|55377771|ref|YP_135621.1| - 2.7 8.1 5.3 0.29 11.1 0.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3925) O-antigen_lig PF13425.1 gi|55377771|ref|YP_135621.1| - 4.2 7.3 7.8 17 5.3 5.4 1.8 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF4131 PF13567.1 gi|55377771|ref|YP_135621.1| - 6 6.2 6.6 28 4.0 4.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) MFS_1 PF07690.11 gi|55377772|ref|YP_135622.1| - 2.1e-27 95.7 60.9 9.8e-21 73.8 18.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3491 PF11996.3 gi|55377773|ref|YP_135623.1| - 0.0021 15.6 0.0 0.0025 15.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3491) DUF3693 PF12472.3 gi|55377773|ref|YP_135623.1| - 0.28 10.7 3.0 1.3 8.6 0.2 2.2 1 1 1 2 2 2 0 Phage related protein DUF4129 PF13559.1 gi|55377775|ref|YP_135625.1| - 3.9e-08 33.1 3.3 3.9e-08 33.1 2.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) MG1 PF11974.3 gi|55377775|ref|YP_135625.1| - 0.014 15.9 1.2 0.014 15.9 0.8 3.1 2 1 1 3 3 3 0 Alpha-2-macroglobulin MG1 domain DUF2613 PF11021.3 gi|55377775|ref|YP_135625.1| - 0.037 13.7 2.9 0.11 12.2 1.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) IncA PF04156.9 gi|55377776|ref|YP_135626.1| - 0.15 11.5 5.1 0.24 10.9 3.5 1.2 1 0 0 1 1 1 0 IncA protein CoatB PF10389.4 gi|55377776|ref|YP_135626.1| - 1.9 8.4 6.8 0.65 9.8 1.4 2.8 2 1 0 2 2 2 0 Bacteriophage coat protein B DUF58 PF01882.13 gi|55377777|ref|YP_135627.1| - 4.9e-17 61.8 0.4 1.3e-16 60.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|55377777|ref|YP_135627.1| - 1.7e-09 37.5 5.6 5.2e-09 36.0 3.9 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|55377777|ref|YP_135627.1| - 8.3e-08 31.5 0.0 1.9e-07 30.3 0.0 1.5 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|55377777|ref|YP_135627.1| - 0.00049 20.1 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 CARDB NPCBM_assoc PF10633.4 gi|55377777|ref|YP_135627.1| - 0.00068 19.6 0.1 0.00068 19.6 0.1 2.2 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase U6-snRNA_bdg PF10596.4 gi|55377777|ref|YP_135627.1| - 0.21 10.9 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 U6-snRNA interacting domain of PrP8 AAA_3 PF07726.6 gi|55377779|ref|YP_135629.1| - 1.9e-65 218.4 0.1 3.1e-65 217.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55377779|ref|YP_135629.1| - 3.3e-16 59.2 0.0 9.6e-16 57.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|55377779|ref|YP_135629.1| - 2.7e-07 30.8 0.0 9e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|55377779|ref|YP_135629.1| - 5.4e-06 25.4 0.0 4e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|55377779|ref|YP_135629.1| - 2.9e-05 23.5 0.0 0.00041 19.8 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|55377779|ref|YP_135629.1| - 4.9e-05 22.4 0.0 0.00058 18.9 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|55377779|ref|YP_135629.1| - 0.011 16.4 0.0 0.022 15.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|55377779|ref|YP_135629.1| - 0.014 15.7 0.0 0.038 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|55377779|ref|YP_135629.1| - 0.015 14.4 0.1 5.6 6.0 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|55377779|ref|YP_135629.1| - 0.033 13.9 1.0 0.11 12.2 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_2 PF07724.9 gi|55377779|ref|YP_135629.1| - 0.086 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) SKI PF01202.17 gi|55377779|ref|YP_135629.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Shikimate kinase DUF2237 PF09996.4 gi|55377780|ref|YP_135630.1| - 2e-52 175.6 0.0 2.2e-52 175.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) AAA_12 PF13087.1 gi|55377781|ref|YP_135631.1| - 1.8e-41 141.7 0.0 2.7e-41 141.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|55377781|ref|YP_135631.1| - 1.7e-39 135.8 1.7 4.3e-20 72.3 0.7 3.1 3 0 0 3 3 3 2 AAA domain Dna2 PF08696.6 gi|55377781|ref|YP_135631.1| - 4.1e-37 127.5 0.0 1.7e-36 125.5 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|55377781|ref|YP_135631.1| - 1e-19 70.8 1.7 1e-19 70.8 1.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|55377781|ref|YP_135631.1| - 1e-16 60.3 1.3 1.3e-13 50.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain PDDEXK_1 PF12705.2 gi|55377781|ref|YP_135631.1| - 1.7e-12 47.2 0.2 3.8e-12 46.1 0.0 1.6 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|55377781|ref|YP_135631.1| - 1.3e-08 34.6 0.1 0.024 14.1 0.0 3.6 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|55377781|ref|YP_135631.1| - 3.4e-07 29.8 0.0 5.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.4 gi|55377781|ref|YP_135631.1| - 4.8e-05 22.4 0.2 0.00012 21.2 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|55377781|ref|YP_135631.1| - 0.00013 22.0 0.0 0.0004 20.4 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Helicase_RecD PF05127.9 gi|55377781|ref|YP_135631.1| - 0.00019 21.1 0.0 0.00043 19.9 0.0 1.6 1 0 0 1 1 1 1 Helicase AAA_16 PF13191.1 gi|55377781|ref|YP_135631.1| - 0.00047 20.1 0.3 0.0019 18.2 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55377781|ref|YP_135631.1| - 0.00053 20.1 0.0 0.0025 17.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|55377781|ref|YP_135631.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PIF1 PF05970.9 gi|55377781|ref|YP_135631.1| - 0.0012 17.8 0.0 0.055 12.4 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase CbiA PF01656.18 gi|55377781|ref|YP_135631.1| - 0.0063 15.9 0.3 0.022 14.1 0.2 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PhoH PF02562.11 gi|55377781|ref|YP_135631.1| - 0.0082 15.3 0.0 0.03 13.5 0.0 1.9 1 1 0 1 1 1 1 PhoH-like protein SRP54 PF00448.17 gi|55377781|ref|YP_135631.1| - 0.0084 15.5 0.0 0.13 11.7 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|55377781|ref|YP_135631.1| - 0.0095 15.4 0.0 0.12 11.8 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|55377781|ref|YP_135631.1| - 0.012 14.3 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|55377781|ref|YP_135631.1| - 0.021 15.0 0.7 0.066 13.4 0.2 2.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55377781|ref|YP_135631.1| - 0.022 14.4 0.0 0.27 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|55377781|ref|YP_135631.1| - 0.024 14.0 0.0 0.062 12.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|55377781|ref|YP_135631.1| - 0.025 13.7 0.0 0.056 12.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|55377781|ref|YP_135631.1| - 0.031 13.6 0.0 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|55377781|ref|YP_135631.1| - 0.033 13.0 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|55377781|ref|YP_135631.1| - 0.055 13.3 0.0 0.18 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|55377781|ref|YP_135631.1| - 0.094 12.2 0.1 0.26 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain bPH_2 PF03703.9 gi|55377782|ref|YP_135632.1| - 2.4e-50 168.4 3.3 2.5e-19 69.0 0.0 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|55377782|ref|YP_135632.1| - 0.024 14.4 0.0 9.9 6.1 0.0 3.1 3 0 0 3 3 3 0 Bacterial PH domain bPH_2 PF03703.9 gi|55377783|ref|YP_135633.1| - 2e-16 59.7 0.1 3.1e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain PspC PF04024.7 gi|55377783|ref|YP_135633.1| - 1.7 8.1 6.4 12 5.4 4.4 2.2 1 1 1 2 2 2 0 PspC domain Cytomega_UL20A PF05984.7 gi|55377784|ref|YP_135634.1| - 0.0062 16.7 2.8 0.34 11.1 0.0 2.1 1 1 1 2 2 2 2 Cytomegalovirus UL20A protein CytB6-F_Fe-S PF08802.5 gi|55377784|ref|YP_135634.1| - 0.19 11.7 0.6 0.29 11.1 0.4 1.2 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|55377784|ref|YP_135634.1| - 0.27 11.3 3.7 0.54 10.3 2.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pro_CA PF00484.14 gi|55377785|ref|YP_135635.1| - 6.7e-25 87.8 0.1 1.1e-24 87.1 0.0 1.4 1 0 0 1 1 1 1 Carbonic anhydrase DEAD_assoc PF08494.6 gi|55377786|ref|YP_135636.1| - 8.2e-52 175.6 0.4 1.6e-51 174.7 0.3 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|55377786|ref|YP_135636.1| - 2e-31 108.7 0.0 3e-29 101.6 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|55377786|ref|YP_135636.1| - 3.6e-16 58.7 0.0 1.3e-14 53.7 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|55377786|ref|YP_135636.1| - 2.9e-09 37.0 0.0 6.9e-09 35.7 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|55377786|ref|YP_135636.1| - 0.0013 18.9 0.1 0.014 15.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.16 gi|55377786|ref|YP_135636.1| - 0.18 11.0 0.0 21 4.2 0.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DHDPS PF00701.17 gi|55377787|ref|YP_135637.1| - 2.7e-60 203.4 0.0 3e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF348 PF03990.9 gi|55377787|ref|YP_135637.1| - 1.8 8.2 0.0 1.8 8.2 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF348) HTH_20 PF12840.2 gi|55377788|ref|YP_135638.1| - 3.1e-13 49.3 0.0 5.5e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55377788|ref|YP_135638.1| - 8.5e-09 34.6 0.0 1.3e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55377788|ref|YP_135638.1| - 1.3e-07 31.1 0.0 2.4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|55377788|ref|YP_135638.1| - 1.8e-07 30.7 0.0 3.6e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|55377788|ref|YP_135638.1| - 0.00034 20.2 0.0 0.00059 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55377788|ref|YP_135638.1| - 0.0034 17.6 0.0 0.0076 16.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|55377788|ref|YP_135638.1| - 0.012 15.2 0.1 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_42 PF06224.7 gi|55377788|ref|YP_135638.1| - 0.016 14.5 0.4 0.029 13.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|55377788|ref|YP_135638.1| - 0.018 15.1 0.1 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r3 PF04539.11 gi|55377788|ref|YP_135638.1| - 0.024 14.5 0.1 0.064 13.1 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_r4 PF04545.11 gi|55377788|ref|YP_135638.1| - 0.025 13.8 0.0 0.048 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MGC-24 PF05283.6 gi|55377788|ref|YP_135638.1| - 0.091 12.5 0.9 0.14 11.9 0.6 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) HTH_45 PF14947.1 gi|55377788|ref|YP_135638.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Methyltransf_31 PF13847.1 gi|55377789|ref|YP_135639.1| - 3.3e-16 59.2 0.0 5.6e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55377789|ref|YP_135639.1| - 1.9e-15 57.4 0.3 3.6e-15 56.4 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55377789|ref|YP_135639.1| - 8.4e-12 45.4 0.1 1.9e-11 44.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55377789|ref|YP_135639.1| - 3.8e-11 43.3 0.0 6.7e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55377789|ref|YP_135639.1| - 8.4e-10 38.9 0.0 1.9e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55377789|ref|YP_135639.1| - 5.5e-09 35.4 0.1 9e-09 34.7 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|55377789|ref|YP_135639.1| - 4.6e-08 32.9 0.0 7.2e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55377789|ref|YP_135639.1| - 3.3e-07 30.3 0.2 4.9e-07 29.7 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55377789|ref|YP_135639.1| - 1.9e-06 27.3 0.0 2.9e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|55377789|ref|YP_135639.1| - 0.00052 19.2 0.1 0.00071 18.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|55377789|ref|YP_135639.1| - 0.0014 18.3 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|55377789|ref|YP_135639.1| - 0.0028 16.7 0.0 0.0037 16.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|55377789|ref|YP_135639.1| - 0.0092 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|55377789|ref|YP_135639.1| - 0.017 14.1 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|55377789|ref|YP_135639.1| - 0.032 12.9 0.0 0.04 12.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|55377789|ref|YP_135639.1| - 0.038 13.5 0.1 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|55377789|ref|YP_135639.1| - 0.073 12.5 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|55377789|ref|YP_135639.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Lactamase_B_2 PF12706.2 gi|55377790|ref|YP_135640.1| - 3e-15 56.2 0.5 3.7e-15 55.9 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|55377790|ref|YP_135640.1| - 6.5e-13 48.7 4.1 1.5e-12 47.6 2.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|55377790|ref|YP_135640.1| - 0.0008 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|55377791|ref|YP_135641.1| - 9.6e-16 57.4 0.1 1.7e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|55377791|ref|YP_135641.1| - 1.3e-10 41.4 0.4 2.5e-10 40.5 0.3 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|55377791|ref|YP_135641.1| - 0.00033 21.1 0.2 0.00063 20.2 0.2 1.5 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|55377791|ref|YP_135641.1| - 0.00034 20.5 0.6 0.0027 17.6 0.0 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|55377791|ref|YP_135641.1| - 0.001 18.5 0.0 0.0027 17.2 0.0 1.8 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|55377791|ref|YP_135641.1| - 0.0024 17.6 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain TPR_7 PF13176.1 gi|55377791|ref|YP_135641.1| - 0.11 12.3 0.4 0.56 10.1 0.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat eRF1_1 PF03463.10 gi|55377792|ref|YP_135642.1| - 6.6e-34 116.3 0.2 1e-33 115.7 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|55377792|ref|YP_135642.1| - 6.1e-21 74.8 1.5 1.5e-20 73.5 0.0 2.3 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|55377792|ref|YP_135642.1| - 9.4e-21 74.5 0.2 3.9e-20 72.5 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|55377792|ref|YP_135642.1| - 0.027 13.9 0.1 0.045 13.2 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DUF4013 PF13197.1 gi|55377793|ref|YP_135643.1| - 6.1e-37 126.5 22.1 8.1e-37 126.1 15.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) AIRS_C PF02769.17 gi|55377794|ref|YP_135644.1| - 7.2e-26 91.0 1.1 1.2e-25 90.3 0.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|55377794|ref|YP_135644.1| - 5.5e-08 32.9 4.0 2.2e-07 31.0 0.1 2.7 2 1 1 3 3 3 1 AIR synthase related protein, N-terminal domain DUF1513 PF07433.6 gi|55377794|ref|YP_135644.1| - 0.02 13.8 1.5 1.2 8.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) MtrH PF02007.13 gi|55377794|ref|YP_135644.1| - 0.069 12.1 0.4 0.12 11.3 0.3 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase MtrH subunit FbpA PF05833.6 gi|55377795|ref|YP_135645.1| - 3.7e-84 282.8 0.0 5.1e-84 282.4 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|55377795|ref|YP_135645.1| - 9.5e-26 89.5 0.0 1.6e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) NAD_binding_8 PF13450.1 gi|55377796|ref|YP_135646.1| - 2e-15 56.5 0.9 5.1e-15 55.2 0.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|55377796|ref|YP_135646.1| - 7e-12 45.1 1.8 2.9e-05 23.3 0.1 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|55377796|ref|YP_135646.1| - 7.6e-08 31.6 2.2 1e-06 27.8 0.4 2.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55377796|ref|YP_135646.1| - 2.1e-05 24.5 0.0 7e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377796|ref|YP_135646.1| - 0.00013 22.0 1.0 0.00057 20.0 0.7 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55377796|ref|YP_135646.1| - 0.0012 18.0 0.4 0.0017 17.4 0.3 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|55377796|ref|YP_135646.1| - 0.0013 17.6 3.5 0.0013 17.6 2.4 2.3 2 1 1 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|55377796|ref|YP_135646.1| - 0.0027 16.8 0.2 0.0036 16.4 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|55377796|ref|YP_135646.1| - 0.0035 17.1 0.2 0.45 10.2 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding ApbA PF02558.11 gi|55377796|ref|YP_135646.1| - 0.0045 16.4 0.1 0.22 10.9 0.1 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|55377796|ref|YP_135646.1| - 0.0076 15.6 0.1 0.011 15.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain HI0933_like PF03486.9 gi|55377796|ref|YP_135646.1| - 0.0077 14.7 0.5 0.012 14.0 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|55377796|ref|YP_135646.1| - 0.01 16.1 0.9 0.021 15.2 0.2 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377796|ref|YP_135646.1| - 0.018 13.8 1.6 0.032 13.1 1.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|55377796|ref|YP_135646.1| - 0.062 12.9 0.1 0.093 12.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|55377796|ref|YP_135646.1| - 0.086 11.8 0.2 0.14 11.1 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.15 gi|55377796|ref|YP_135646.1| - 0.14 12.2 0.1 0.26 11.3 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CARDB PF07705.6 gi|55377797|ref|YP_135647.1| - 5.9e-42 141.8 79.1 8.7e-08 32.1 2.6 11.6 11 1 1 12 12 12 9 CARDB LBP_BPI_CETP PF01273.20 gi|55377797|ref|YP_135647.1| - 0.0063 15.8 1.0 12 5.2 0.1 4.5 5 0 0 5 5 5 1 LBP / BPI / CETP family, N-terminal domain Fn3-like PF14310.1 gi|55377797|ref|YP_135647.1| - 0.15 12.0 10.9 5.7 6.9 0.0 7.0 8 0 0 8 8 8 0 Fibronectin type III-like domain RNA_pol_I_A49 PF06870.7 gi|55377797|ref|YP_135647.1| - 0.35 9.3 0.5 1 7.8 0.0 1.9 2 0 0 2 2 2 0 A49-like RNA polymerase I associated factor Cupredoxin_1 PF13473.1 gi|55377797|ref|YP_135647.1| - 2.3 8.1 11.3 27 4.6 0.0 6.2 5 3 1 7 7 7 0 Cupredoxin-like domain DDE_Tnp_IS1595 PF12762.2 gi|55377798|ref|YP_135648.1| - 3.6e-23 82.0 0.0 6.2e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|55377798|ref|YP_135648.1| - 3e-10 39.7 1.3 7.2e-10 38.5 0.9 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|55377798|ref|YP_135648.1| - 0.00029 20.2 5.1 0.00029 20.2 3.5 1.9 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.10 gi|55377798|ref|YP_135648.1| - 0.061 13.2 4.3 0.13 12.2 3.0 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger DUF2387 PF09526.5 gi|55377798|ref|YP_135648.1| - 0.094 12.6 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.1 gi|55377798|ref|YP_135648.1| - 0.26 11.3 7.0 1.9 8.6 0.3 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|55377798|ref|YP_135648.1| - 0.73 9.8 3.4 14 5.7 0.0 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|55377798|ref|YP_135648.1| - 5.6 7.0 9.4 1.1 9.2 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger Radical_SAM PF04055.16 gi|55377799|ref|YP_135649.1| - 1.4e-24 87.1 0.1 3.1e-23 82.7 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|55377799|ref|YP_135649.1| - 5.6e-12 45.5 0.2 1.5e-11 44.1 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55377799|ref|YP_135649.1| - 0.0069 16.5 0.0 0.03 14.4 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MCPsignal PF00015.16 gi|55377801|ref|YP_135651.1| - 2.3e-44 151.4 80.4 3.2e-44 151.0 29.2 4.0 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55377801|ref|YP_135651.1| - 0.0031 17.6 0.5 0.0031 17.6 0.4 5.5 6 1 0 6 6 6 1 HAMP domain DUF948 PF06103.6 gi|55377801|ref|YP_135651.1| - 1.8 8.4 37.9 0.31 10.9 4.1 5.8 3 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) SnoaL_2 PF12680.2 gi|55377801|ref|YP_135651.1| - 5.6 7.4 10.6 0.18 12.1 0.2 3.3 2 2 1 3 3 3 0 SnoaL-like domain AAA_27 PF13514.1 gi|55377801|ref|YP_135651.1| - 8.9 3.8 69.2 0.02 12.5 27.1 2.0 1 1 1 2 2 2 0 AAA domain Cupin_2 PF07883.6 gi|55377802|ref|YP_135652.1| - 6.4e-12 44.8 0.2 9.7e-12 44.2 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|55377802|ref|YP_135652.1| - 0.0022 17.6 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|55377802|ref|YP_135652.1| - 0.0027 17.0 0.0 0.0052 16.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|55377802|ref|YP_135652.1| - 0.086 12.2 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 Cupin tRNA_anti-codon PF01336.20 gi|55377803|ref|YP_135653.1| - 2.4e-11 43.3 0.1 5.9e-11 42.0 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|55377803|ref|YP_135653.1| - 1.7e-07 31.2 1.5 3.3e-07 30.3 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|55377803|ref|YP_135653.1| - 0.0027 17.5 0.0 0.0073 16.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1195 PF06708.6 gi|55377803|ref|YP_135653.1| - 0.035 13.5 0.5 0.093 12.1 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1195) Macoilin PF09726.4 gi|55377803|ref|YP_135653.1| - 1.1 7.3 4.5 0.44 8.7 1.5 1.4 2 0 0 2 2 2 0 Transmembrane protein Yip1 PF04893.12 gi|55377805|ref|YP_135655.1| - 0.00034 20.1 6.5 0.00043 19.8 4.5 1.1 1 0 0 1 1 1 1 Yip1 domain FMN_red PF03358.10 gi|55377806|ref|YP_135656.1| - 1.4e-35 122.0 0.0 1.8e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|55377806|ref|YP_135656.1| - 1e-07 31.6 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold B12-binding PF02310.14 gi|55377808|ref|YP_135658.1| - 2.2e-14 53.3 0.3 3.2e-14 52.8 0.2 1.3 1 1 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|55377808|ref|YP_135658.1| - 0.0019 17.5 0.1 0.0034 16.7 0.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein ADH_zinc_N PF00107.21 gi|55377808|ref|YP_135658.1| - 0.0026 17.3 0.1 0.0065 16.0 0.0 1.7 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Glyco_transf_28 PF03033.15 gi|55377808|ref|YP_135658.1| - 0.026 14.2 0.2 0.08 12.7 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain OKR_DC_1_N PF03709.10 gi|55377808|ref|YP_135658.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Acetyltransf_1 PF00583.19 gi|55377809|ref|YP_135659.1| - 4.1e-15 55.5 0.1 7.1e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55377809|ref|YP_135659.1| - 1.3e-11 44.6 0.0 1.9e-11 44.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55377809|ref|YP_135659.1| - 4.1e-11 42.8 0.0 5.7e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55377809|ref|YP_135659.1| - 3.1e-09 36.9 0.0 4e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55377809|ref|YP_135659.1| - 1.2e-07 31.4 0.0 1.8e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|55377809|ref|YP_135659.1| - 6.7e-06 26.3 0.0 7.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55377809|ref|YP_135659.1| - 0.00082 19.2 0.2 0.002 18.0 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|55377809|ref|YP_135659.1| - 0.0015 18.5 1.2 0.0031 17.4 0.5 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55377809|ref|YP_135659.1| - 0.049 13.5 0.1 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Na_Ca_ex PF01699.19 gi|55377810|ref|YP_135660.1| - 8.1e-35 119.4 22.6 3.6e-18 65.5 6.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HhH-GPD PF00730.20 gi|55377811|ref|YP_135661.1| - 2.9e-16 59.6 0.0 4.8e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|55377811|ref|YP_135661.1| - 1.9e-05 24.1 0.0 3.8e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HATPase_c PF02518.21 gi|55377812|ref|YP_135662.1| - 8.5e-19 67.3 0.0 1.8e-18 66.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|55377812|ref|YP_135662.1| - 2.3e-13 50.1 0.2 2.3e-13 50.1 0.1 2.5 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.20 gi|55377812|ref|YP_135662.1| - 2.7e-13 49.7 0.8 2.7e-13 49.7 0.5 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55377812|ref|YP_135662.1| - 0.00076 19.1 0.0 0.0018 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Metal_resist PF13801.1 gi|55377812|ref|YP_135662.1| - 0.0091 15.9 7.1 0.11 12.4 2.2 2.7 1 1 0 2 2 2 1 Heavy-metal resistance DUF3347 PF11827.3 gi|55377812|ref|YP_135662.1| - 0.065 13.2 0.3 8.8 6.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) GAS PF13851.1 gi|55377812|ref|YP_135662.1| - 0.15 11.2 0.6 0.36 9.9 0.4 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Hemerythrin PF01814.18 gi|55377812|ref|YP_135662.1| - 0.28 11.3 4.6 1.5 8.9 2.7 2.5 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain IncA PF04156.9 gi|55377812|ref|YP_135662.1| - 1.9 8.0 13.6 0.099 12.2 3.3 2.6 2 1 0 2 2 2 0 IncA protein DUF4010 PF13194.1 gi|55377814|ref|YP_135664.1| - 7e-53 179.0 25.3 7e-53 179.0 17.5 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|55377814|ref|YP_135664.1| - 1.1e-14 54.4 9.3 1.1e-14 54.4 6.4 4.1 2 1 1 4 4 4 1 MgtC family HATPase_c PF02518.21 gi|55377815|ref|YP_135665.1| - 1.2e-20 73.3 0.2 2.1e-20 72.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|55377815|ref|YP_135665.1| - 1.3e-20 73.2 0.1 3.7e-12 46.0 0.0 3.5 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|55377815|ref|YP_135665.1| - 6.7e-20 71.1 1.0 8.1e-09 35.4 0.1 3.0 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|55377815|ref|YP_135665.1| - 1.2e-15 57.7 0.6 2.9e-07 30.7 0.0 4.2 3 2 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|55377815|ref|YP_135665.1| - 4.1e-14 52.4 0.0 1e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|55377815|ref|YP_135665.1| - 5.5e-12 45.5 0.8 1.5e-11 44.0 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|55377815|ref|YP_135665.1| - 6e-12 44.9 0.8 7e-05 22.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.1 gi|55377815|ref|YP_135665.1| - 3.5e-05 23.7 0.0 7.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|55377815|ref|YP_135665.1| - 0.0023 17.6 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|55377815|ref|YP_135665.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PAS_7 PF12860.2 gi|55377815|ref|YP_135665.1| - 0.068 13.1 0.1 8 6.5 0.0 3.2 3 0 0 3 3 3 0 PAS fold HATPase_c_3 PF13589.1 gi|55377815|ref|YP_135665.1| - 0.16 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PadR PF03551.9 gi|55377816|ref|YP_135666.1| - 3.4e-17 61.9 1.0 4e-17 61.7 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55377816|ref|YP_135666.1| - 0.00011 22.3 0.0 0.00015 22.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|55377816|ref|YP_135666.1| - 0.0031 17.2 0.1 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|55377816|ref|YP_135666.1| - 0.0094 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|55377816|ref|YP_135666.1| - 0.016 14.8 0.4 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|55377816|ref|YP_135666.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|55377816|ref|YP_135666.1| - 0.074 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HypA PF01155.14 gi|55377817|ref|YP_135667.1| - 0.0065 16.1 0.6 0.011 15.3 0.4 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|55377817|ref|YP_135667.1| - 0.011 15.5 0.3 0.021 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|55377817|ref|YP_135667.1| - 0.061 12.8 1.0 0.13 11.7 0.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ArfGap PF01412.13 gi|55377817|ref|YP_135667.1| - 0.075 12.8 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf TF_Zn_Ribbon PF08271.7 gi|55377817|ref|YP_135667.1| - 0.086 12.1 2.0 0.18 11.1 1.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|55377817|ref|YP_135667.1| - 0.09 12.2 1.0 9.6 5.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|55377817|ref|YP_135667.1| - 0.092 12.5 0.9 0.3 10.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|55377817|ref|YP_135667.1| - 0.14 12.1 1.5 0.37 10.7 1.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain GATA PF00320.22 gi|55377817|ref|YP_135667.1| - 0.24 10.7 0.1 0.24 10.7 0.1 2.3 3 0 0 3 3 3 0 GATA zinc finger zf-IS66 PF13005.2 gi|55377817|ref|YP_135667.1| - 0.38 10.7 3.5 5.7 6.9 0.3 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.13 gi|55377817|ref|YP_135667.1| - 1.4 8.5 4.4 14 5.3 1.0 2.6 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-HYPF PF07503.7 gi|55377817|ref|YP_135667.1| - 1.5 8.2 6.8 3 7.3 2.3 2.9 2 1 0 2 2 2 0 HypF finger NUDIX PF00293.23 gi|55377818|ref|YP_135668.1| - 8.3e-14 51.3 0.5 1e-13 51.0 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain KH_3 PF13014.1 gi|55377818|ref|YP_135668.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 KH domain THF_DHG_CYH_C PF02882.14 gi|55377819|ref|YP_135669.1| - 1.2e-67 226.0 1.5 1.6e-67 225.5 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|55377819|ref|YP_135669.1| - 6e-37 126.2 0.8 1e-36 125.5 0.5 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Cadherin-like PF12733.2 gi|55377820|ref|YP_135670.1| - 0.036 14.3 0.3 0.14 12.4 0.1 1.9 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain PemK PF02452.12 gi|55377820|ref|YP_135670.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 PemK-like protein LPAM_1 PF08139.7 gi|55377820|ref|YP_135670.1| - 0.15 12.3 1.8 0.27 11.5 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site SHMT PF00464.14 gi|55377821|ref|YP_135671.1| - 2.4e-152 506.9 0.0 2.9e-152 506.6 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|55377821|ref|YP_135671.1| - 5.6e-07 28.8 0.0 1e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|55377821|ref|YP_135671.1| - 0.0001 21.5 0.0 0.0029 16.8 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Trypsin_2 PF13365.1 gi|55377821|ref|YP_135671.1| - 0.0082 16.1 0.1 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 Trypsin-like peptidase domain CHAT PF12770.2 gi|55377822|ref|YP_135672.1| - 0.0053 15.9 0.2 0.031 13.3 0.2 2.0 1 1 0 1 1 1 1 CHAT domain DUF876 PF05936.7 gi|55377823|ref|YP_135673.1| - 0.0031 16.0 0.1 0.018 13.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF876) YcaO PF02624.11 gi|55377824|ref|YP_135674.1| - 6.3e-60 203.4 8.4 9.1e-60 202.8 5.8 1.2 1 0 0 1 1 1 1 YcaO-like family DUF63 PF01889.12 gi|55377825|ref|YP_135675.1| - 1.9e-33 116.7 12.3 2.4e-33 116.4 7.2 2.0 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Inositol_P PF00459.20 gi|55377826|ref|YP_135676.1| - 2.3e-53 181.2 0.4 2.6e-53 181.0 0.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family BMFP PF04380.8 gi|55377826|ref|YP_135676.1| - 0.18 11.9 0.9 0.39 10.8 0.7 1.5 1 1 0 1 1 1 0 Membrane fusogenic activity Epimerase PF01370.16 gi|55377831|ref|YP_135681.1| - 3.6e-49 167.3 0.1 4.5e-49 167.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55377831|ref|YP_135681.1| - 6e-16 57.9 0.0 1.1e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|55377831|ref|YP_135681.1| - 9.9e-14 50.9 0.0 5.3e-09 35.3 0.0 2.4 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|55377831|ref|YP_135681.1| - 1.6e-12 46.8 0.2 4.9e-12 45.2 0.1 1.7 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|55377831|ref|YP_135681.1| - 7.5e-08 32.4 0.3 1.5e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|55377831|ref|YP_135681.1| - 5.3e-06 25.5 0.0 0.0022 16.9 0.0 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55377831|ref|YP_135681.1| - 2.4e-05 24.4 0.0 3.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|55377831|ref|YP_135681.1| - 0.00026 20.3 0.1 0.00038 19.7 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|55377831|ref|YP_135681.1| - 0.0019 17.9 0.1 0.0037 16.9 0.0 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55377832|ref|YP_135682.1| - 4.3e-57 193.2 0.0 5.2e-57 192.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55377832|ref|YP_135682.1| - 4.9e-08 32.2 0.0 2.5e-07 29.9 0.0 2.0 2 1 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55377832|ref|YP_135682.1| - 2.5e-07 30.8 0.0 3.7e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|55377832|ref|YP_135682.1| - 7.9e-07 28.0 0.0 0.012 14.3 0.1 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|55377832|ref|YP_135682.1| - 6.6e-06 25.2 0.0 0.068 12.0 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|55377832|ref|YP_135682.1| - 5.1e-05 22.3 0.0 0.0016 17.4 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|55377832|ref|YP_135682.1| - 0.0068 16.3 0.6 0.01 15.7 0.1 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|55377832|ref|YP_135682.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 KR domain Polysacc_synt_C PF14667.1 gi|55377834|ref|YP_135684.1| - 7.1e-18 64.8 13.0 7.1e-18 64.8 9.0 3.6 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|55377834|ref|YP_135684.1| - 2.2e-14 53.3 33.5 2.2e-14 53.3 23.2 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|55377834|ref|YP_135684.1| - 5.7e-14 52.1 18.9 5.7e-14 52.1 13.1 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|55377834|ref|YP_135684.1| - 0.074 11.4 33.6 0.12 10.7 23.2 1.4 1 1 0 1 1 1 0 MviN-like protein Glycos_transf_1 PF00534.15 gi|55377836|ref|YP_135686.1| - 1.5e-23 83.0 0.0 2.2e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55377836|ref|YP_135686.1| - 1.5e-18 67.2 0.0 7.9e-18 64.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55377836|ref|YP_135686.1| - 2.1e-08 34.4 0.0 3.8e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|55377836|ref|YP_135686.1| - 1.5e-06 28.3 0.0 3.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|55377836|ref|YP_135686.1| - 0.0014 18.4 0.0 0.0028 17.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|55377836|ref|YP_135686.1| - 0.0046 16.6 0.0 0.008 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|55377838|ref|YP_135688.1| - 9.7e-39 132.5 0.0 1.9e-38 131.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55377838|ref|YP_135688.1| - 1.1e-22 80.6 0.0 8.8e-22 77.7 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55377838|ref|YP_135688.1| - 1.8e-12 47.3 0.0 5.6e-12 45.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55377838|ref|YP_135688.1| - 1.8e-09 37.9 0.1 1e-07 32.2 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55377838|ref|YP_135688.1| - 3.7e-06 26.7 0.0 6.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|55377838|ref|YP_135688.1| - 0.00076 19.3 0.0 0.0023 17.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|55377839|ref|YP_135689.1| - 1e-23 83.8 3.1 1.4e-23 83.4 2.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377839|ref|YP_135689.1| - 4.8e-14 52.7 0.2 6.3e-14 52.3 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55377839|ref|YP_135689.1| - 9.1e-09 34.7 0.6 3.2e-08 33.0 0.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 MULE PF10551.4 gi|55377839|ref|YP_135689.1| - 0.04 14.0 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 MULE transposase domain Saccharop_dh_N PF04455.7 gi|55377839|ref|YP_135689.1| - 0.04 14.0 0.1 0.5 10.5 0.0 2.4 3 0 0 3 3 3 0 LOR/SDH bifunctional enzyme conserved region Glyco_tranf_2_4 PF13704.1 gi|55377839|ref|YP_135689.1| - 0.2 11.9 2.2 1.4 9.3 1.5 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|55377840|ref|YP_135690.1| - 4.7e-24 84.9 0.0 6.1e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377840|ref|YP_135690.1| - 1.5e-06 28.1 0.0 2e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|55377840|ref|YP_135690.1| - 0.056 13.7 0.0 0.09 13.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 MtmB PF05369.7 gi|55377840|ref|YP_135690.1| - 0.073 11.2 0.1 0.11 10.6 0.1 1.1 1 0 0 1 1 1 0 Monomethylamine methyltransferase MtmB Peptidase_M64 PF09471.5 gi|55377842|ref|YP_135692.1| - 0.0025 17.4 0.4 0.0037 16.9 0.2 1.3 1 0 0 1 1 1 1 IgA Peptidase M64 Reprolysin_3 PF13582.1 gi|55377842|ref|YP_135692.1| - 0.0073 16.8 0.9 0.021 15.3 0.3 2.1 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|55377842|ref|YP_135692.1| - 0.016 15.2 0.3 0.025 14.6 0.2 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|55377842|ref|YP_135692.1| - 0.032 13.0 0.1 0.05 12.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_4 PF13583.1 gi|55377842|ref|YP_135692.1| - 0.069 12.6 0.8 0.1 12.1 0.6 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|55377842|ref|YP_135692.1| - 0.11 10.9 0.0 0.18 10.2 0.0 1.3 1 0 0 1 1 1 0 Putative peptidase family TSP_3 PF02412.13 gi|55377842|ref|YP_135692.1| - 0.8 9.2 6.6 7.6 6.0 0.6 2.8 2 0 0 2 2 2 0 Thrombospondin type 3 repeat FG-GAP PF01839.18 gi|55377842|ref|YP_135692.1| - 5.6 6.7 12.3 8.8 6.1 1.8 3.7 3 0 0 3 3 3 0 FG-GAP repeat DUF58 PF01882.13 gi|55377843|ref|YP_135693.1| - 1.4e-20 73.1 0.2 3.4e-20 71.9 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 GP11 PF08677.5 gi|55377843|ref|YP_135693.1| - 0.072 12.2 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 GP11 baseplate wedge protein PLDc_N PF13396.1 gi|55377844|ref|YP_135694.1| - 0.021 14.4 0.3 0.021 14.4 0.2 2.1 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal DUF2512 PF10710.4 gi|55377844|ref|YP_135694.1| - 1.6 8.2 4.1 8.9 5.7 2.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2512) AAA_3 PF07726.6 gi|55377846|ref|YP_135696.1| - 5.9e-61 203.8 0.4 8.9e-61 203.2 0.3 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55377846|ref|YP_135696.1| - 9.6e-18 64.2 0.0 2.7e-17 62.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|55377846|ref|YP_135696.1| - 5.4e-11 41.8 0.1 1.5e-09 37.0 0.1 2.2 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|55377846|ref|YP_135696.1| - 4.5e-08 32.7 0.1 4.9e-07 29.3 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|55377846|ref|YP_135696.1| - 6.8e-06 25.3 0.2 0.1 11.7 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|55377846|ref|YP_135696.1| - 9.4e-06 24.8 0.3 3.2e-05 23.0 0.2 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|55377846|ref|YP_135696.1| - 6.3e-05 23.1 0.0 0.00019 21.6 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|55377846|ref|YP_135696.1| - 0.0038 18.0 0.0 0.011 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|55377846|ref|YP_135696.1| - 0.11 12.5 0.1 1 9.4 0.0 2.4 2 1 0 2 2 2 0 Sigma-54 interaction domain DUF4350 PF14258.1 gi|55377847|ref|YP_135697.1| - 1.4e-08 34.8 0.3 4.3e-08 33.2 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|55377847|ref|YP_135697.1| - 0.0051 16.2 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.5 gi|55377847|ref|YP_135697.1| - 0.04 13.0 0.0 2.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain TrbC PF04956.8 gi|55377848|ref|YP_135698.1| - 0.46 10.5 3.8 0.59 10.1 1.3 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family DUF4131 PF13567.1 gi|55377848|ref|YP_135698.1| - 5 6.4 8.4 7.1 5.9 5.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3040 PF11239.3 gi|55377848|ref|YP_135698.1| - 7.3 6.7 8.8 2 8.5 2.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) FtsX PF02687.16 gi|55377849|ref|YP_135699.1| - 1.9e-18 66.3 41.2 1.9e-11 43.7 6.8 3.6 4 0 0 4 4 4 2 FtsX-like permease family DUF11 PF01345.13 gi|55377849|ref|YP_135699.1| - 0.00082 19.3 1.3 0.00082 19.3 0.9 3.7 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|55377849|ref|YP_135699.1| - 0.0024 17.8 0.8 0.0024 17.8 0.5 3.1 4 0 0 4 4 4 1 CARDB ABC_tran PF00005.22 gi|55377850|ref|YP_135700.1| - 1.7e-29 102.8 0.0 2.5e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55377850|ref|YP_135700.1| - 9.5e-08 32.3 0.1 0.00028 20.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55377850|ref|YP_135700.1| - 0.00042 19.6 0.1 0.0091 15.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55377850|ref|YP_135700.1| - 0.00064 19.2 0.1 0.0012 18.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|55377850|ref|YP_135700.1| - 0.00089 19.1 0.1 0.0088 15.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|55377850|ref|YP_135700.1| - 0.0015 18.5 1.0 0.0033 17.4 0.7 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|55377850|ref|YP_135700.1| - 0.01 15.0 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|55377850|ref|YP_135700.1| - 0.012 15.7 0.1 0.25 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55377850|ref|YP_135700.1| - 0.013 15.0 0.1 0.04 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|55377850|ref|YP_135700.1| - 0.031 14.0 0.5 0.18 11.5 0.0 2.3 3 0 0 3 3 3 0 Part of AAA domain AAA_10 PF12846.2 gi|55377850|ref|YP_135700.1| - 0.13 11.7 0.1 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain YfhO PF09586.5 gi|55377851|ref|YP_135701.1| - 0.00024 19.2 1.0 0.011 13.7 0.6 2.0 1 1 1 2 2 2 2 Bacterial membrane protein YfhO DUF998 PF06197.8 gi|55377851|ref|YP_135701.1| - 0.00099 18.4 15.5 0.00099 18.4 10.7 5.3 1 1 3 5 5 5 3 Protein of unknown function (DUF998) DUF1240 PF06836.7 gi|55377851|ref|YP_135701.1| - 6 7.1 6.4 6.7 7.0 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) DUF4129 PF13559.1 gi|55377852|ref|YP_135702.1| - 0.00018 21.4 2.1 0.00018 21.4 1.5 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4480 PF13715.1 gi|55377852|ref|YP_135702.1| - 0.0014 18.6 1.2 0.17 11.9 0.1 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) LPP PF04728.8 gi|55377852|ref|YP_135702.1| - 1.6 8.5 5.7 0.52 10.1 0.9 2.4 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DUF1616 PF07760.6 gi|55377853|ref|YP_135703.1| - 1.1e-104 349.5 0.0 1.3e-104 349.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF3488 PF11992.3 gi|55377853|ref|YP_135703.1| - 1.8 7.1 7.3 5 5.6 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3488) DUF457 PF04307.9 gi|55377854|ref|YP_135704.1| - 1.3e-10 40.8 10.3 1.6e-10 40.5 7.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SKG6 PF08693.5 gi|55377854|ref|YP_135704.1| - 0.51 9.6 0.1 0.51 9.6 0.0 2.7 3 0 0 3 3 3 0 Transmembrane alpha-helix domain A2L_zn_ribbon PF08792.5 gi|55377855|ref|YP_135705.1| - 7e-07 28.5 1.9 8.6e-07 28.2 1.3 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55377855|ref|YP_135705.1| - 0.0015 18.2 0.8 0.0019 17.9 0.6 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|55377855|ref|YP_135705.1| - 0.0035 17.1 0.4 0.0044 16.8 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.11 gi|55377855|ref|YP_135705.1| - 0.0057 16.2 1.1 1 9.0 0.1 2.1 2 0 0 2 2 2 2 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|55377855|ref|YP_135705.1| - 0.01 15.1 2.8 0.015 14.6 1.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|55377855|ref|YP_135705.1| - 0.011 15.1 2.0 0.018 14.4 1.4 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|55377855|ref|YP_135705.1| - 0.047 13.6 0.8 5.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain NCD3G PF07562.9 gi|55377855|ref|YP_135705.1| - 0.062 13.0 0.8 0.079 12.6 0.6 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR HypA PF01155.14 gi|55377855|ref|YP_135705.1| - 0.064 12.9 0.5 0.074 12.7 0.3 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE_2 PF02318.11 gi|55377855|ref|YP_135705.1| - 0.096 12.5 0.1 0.098 12.5 0.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger Gin PF10764.4 gi|55377855|ref|YP_135705.1| - 0.11 12.1 1.1 0.16 11.7 0.7 1.2 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin zf-ribbon_3 PF13248.1 gi|55377855|ref|YP_135705.1| - 0.11 11.6 3.5 0.24 10.6 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF4568 PF15132.1 gi|55377855|ref|YP_135705.1| - 0.14 11.2 0.2 0.15 11.2 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4568) Prok-RING_1 PF14446.1 gi|55377855|ref|YP_135705.1| - 0.2 11.4 1.8 0.24 11.1 1.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|55377855|ref|YP_135705.1| - 0.26 11.3 1.7 1 9.3 1.6 1.6 1 1 1 2 2 2 0 zinc-finger Cas_CXXC_CXXC PF09706.5 gi|55377855|ref|YP_135705.1| - 0.26 11.4 3.2 0.72 10.0 0.1 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Auto_anti-p27 PF06677.7 gi|55377855|ref|YP_135705.1| - 0.33 10.7 1.6 0.41 10.4 1.1 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|55377855|ref|YP_135705.1| - 0.35 10.5 2.2 11 5.7 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Fer4 PF00037.22 gi|55377855|ref|YP_135705.1| - 3.8 7.2 6.6 5.5 6.7 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain DUF309 PF03745.9 gi|55377858|ref|YP_135708.1| - 3.1e-14 52.1 0.1 4.8e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.9 gi|55377859|ref|YP_135709.1| - 7.2e-14 51.3 0.0 8.6e-14 51.1 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Aldo_ket_red PF00248.16 gi|55377860|ref|YP_135710.1| - 1.6e-64 217.5 0.0 1.9e-64 217.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family PglZ PF08665.7 gi|55377861|ref|YP_135711.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 PglZ domain ABC_tran PF00005.22 gi|55377862|ref|YP_135712.1| - 5.3e-33 114.2 0.0 1.1e-32 113.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|55377862|ref|YP_135712.1| - 8.9e-09 34.8 2.3 1.8e-06 27.3 0.1 3.1 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.18 gi|55377862|ref|YP_135712.1| - 9.1e-09 35.1 8.5 1.4e-08 34.4 5.9 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region DUF258 PF03193.11 gi|55377862|ref|YP_135712.1| - 3.4e-06 26.3 0.0 6.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|55377862|ref|YP_135712.1| - 5.8e-05 23.8 0.1 0.00045 21.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|55377862|ref|YP_135712.1| - 0.00023 21.2 0.0 0.27 11.1 0.0 2.6 1 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|55377862|ref|YP_135712.1| - 0.00077 18.9 0.6 0.01 15.2 0.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55377862|ref|YP_135712.1| - 0.00094 18.6 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|55377862|ref|YP_135712.1| - 0.0026 17.9 0.5 0.022 14.9 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55377862|ref|YP_135712.1| - 0.0049 16.8 0.2 0.012 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|55377862|ref|YP_135712.1| - 0.0056 15.3 0.2 0.015 13.8 0.1 1.7 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|55377862|ref|YP_135712.1| - 0.0086 15.6 0.1 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|55377862|ref|YP_135712.1| - 0.014 15.7 0.1 0.083 13.2 0.0 2.2 3 0 0 3 3 3 0 AAA domain DUF4306 PF14154.1 gi|55377862|ref|YP_135712.1| - 0.017 15.0 0.1 0.086 12.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4306) MMR_HSR1 PF01926.18 gi|55377862|ref|YP_135712.1| - 0.027 14.4 0.0 0.08 12.8 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF3987 PF13148.1 gi|55377862|ref|YP_135712.1| - 0.13 10.7 0.8 12 4.3 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) TrkA_N PF02254.13 gi|55377862|ref|YP_135712.1| - 0.37 10.8 4.0 2.7 8.0 0.0 2.5 1 1 0 2 2 2 0 TrkA-N domain 2TM PF13239.1 gi|55377862|ref|YP_135712.1| - 2.4 8.2 5.1 17 5.5 0.1 3.0 3 0 0 3 3 3 0 2TM domain Glycos_transf_2 PF00535.21 gi|55377863|ref|YP_135713.1| - 8.3e-26 90.6 0.1 2.5e-25 89.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55377863|ref|YP_135713.1| - 7.5e-09 35.7 0.0 1.9e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55377863|ref|YP_135713.1| - 5.2e-05 22.4 0.0 0.0001 21.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|55377863|ref|YP_135713.1| - 0.098 11.8 0.1 0.37 9.9 0.0 2.0 2 1 0 2 2 2 0 Glycosyltransferase like family FmdA_AmdA PF03069.10 gi|55377864|ref|YP_135714.1| - 8.1e-52 176.1 0.1 2.3e-46 158.1 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family DZR PF12773.2 gi|55377864|ref|YP_135714.1| - 0.01 15.6 0.3 0.02 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|55377864|ref|YP_135714.1| - 0.036 13.7 2.3 8.2 6.2 0.6 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|55377864|ref|YP_135714.1| - 0.094 12.4 5.7 0.75 9.5 4.0 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|55377864|ref|YP_135714.1| - 0.19 11.7 1.1 3.4 7.6 1.5 2.3 2 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|55377864|ref|YP_135714.1| - 0.22 11.0 3.0 2.3 7.7 2.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|55377864|ref|YP_135714.1| - 1.4 8.4 3.6 9.9 5.7 2.5 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|55377864|ref|YP_135714.1| - 2.4 7.4 6.3 20 4.5 4.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain EmrE PF13536.1 gi|55377865|ref|YP_135715.1| - 3.6 7.8 10.8 3.1 8.0 5.5 2.4 1 1 0 2 2 2 0 Multidrug resistance efflux transporter Gp5_C PF06715.7 gi|55377866|ref|YP_135716.1| - 2.2 8.3 7.3 5.2 7.2 0.1 3.3 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) DUF457 PF04307.9 gi|55377867|ref|YP_135717.1| - 5.3e-14 51.8 7.6 6.4e-14 51.5 5.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Antitoxin-MazE PF04014.13 gi|55377869|ref|YP_135719.1| - 5.8e-13 48.2 0.3 8.3e-13 47.7 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|55377869|ref|YP_135719.1| - 0.0027 17.4 0.0 0.0043 16.7 0.0 1.5 1 1 0 1 1 1 1 MraZ protein NapD PF03927.8 gi|55377869|ref|YP_135719.1| - 0.027 14.3 0.3 0.041 13.7 0.2 1.4 1 0 0 1 1 1 0 NapD protein HMA PF00403.21 gi|55377869|ref|YP_135719.1| - 0.11 12.6 0.2 0.2 11.8 0.1 1.5 1 1 0 1 1 1 0 Heavy-metal-associated domain DUF3042 PF11240.3 gi|55377869|ref|YP_135719.1| - 0.18 11.6 1.2 10 6.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) DUF3368 PF11848.3 gi|55377870|ref|YP_135720.1| - 2.1e-12 46.3 0.0 6.1e-12 44.8 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|55377870|ref|YP_135720.1| - 0.056 13.7 0.4 0.13 12.5 0.1 1.7 2 0 0 2 2 2 0 PIN domain UPF0175 PF03683.8 gi|55377871|ref|YP_135721.1| - 3.9e-12 45.4 1.3 6.4e-12 44.7 0.2 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|55377871|ref|YP_135721.1| - 0.036 13.9 0.3 0.036 13.9 0.2 2.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_Tnp_ISL3 PF13542.1 gi|55377871|ref|YP_135721.1| - 0.097 11.8 0.1 0.55 9.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF2811 PF10929.3 gi|55377871|ref|YP_135721.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) DEAD_assoc PF08494.6 gi|55377871|ref|YP_135721.1| - 0.12 12.1 0.1 0.22 11.2 0.1 1.4 1 1 0 1 1 1 0 DEAD/H associated HEAT_2 PF13646.1 gi|55377872|ref|YP_135722.1| - 0.00017 21.7 0.3 0.0022 18.2 0.2 2.2 1 1 1 2 2 2 1 HEAT repeats HEAT PF02985.17 gi|55377872|ref|YP_135722.1| - 0.017 15.1 0.0 0.058 13.4 0.0 2.0 2 0 0 2 2 2 0 HEAT repeat HEAT_EZ PF13513.1 gi|55377872|ref|YP_135722.1| - 0.19 12.2 1.4 1.1 9.8 0.1 2.6 1 1 2 3 3 3 0 HEAT-like repeat Imm16 PF15565.1 gi|55377872|ref|YP_135722.1| - 0.23 11.3 2.6 8.4 6.3 0.0 2.9 1 1 1 3 3 3 0 Immunity protein 16 Cdc6_C PF09079.6 gi|55377873|ref|YP_135723.1| - 1.2e-19 69.8 0.1 5.3e-19 67.7 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|55377873|ref|YP_135723.1| - 1.1e-13 51.4 0.0 2.5e-13 50.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55377873|ref|YP_135723.1| - 4.7e-12 46.2 0.4 2.8e-11 43.7 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|55377873|ref|YP_135723.1| - 7.8e-06 25.6 0.0 2.6e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.21 gi|55377873|ref|YP_135723.1| - 0.00013 21.4 0.1 0.0003 20.3 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|55377873|ref|YP_135723.1| - 0.00027 20.6 0.3 0.001 18.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|55377873|ref|YP_135723.1| - 0.00032 19.7 0.0 0.00052 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DAP3 PF10236.4 gi|55377873|ref|YP_135723.1| - 0.0026 16.7 0.0 0.0043 16.0 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.24 gi|55377873|ref|YP_135723.1| - 0.008 16.3 0.0 0.025 14.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|55377873|ref|YP_135723.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase PhoH PF02562.11 gi|55377873|ref|YP_135723.1| - 0.012 14.9 0.0 1.2 8.3 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.17 gi|55377873|ref|YP_135723.1| - 0.012 14.4 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.4 gi|55377873|ref|YP_135723.1| - 0.018 14.0 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zot PF05707.7 gi|55377873|ref|YP_135723.1| - 0.025 14.0 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Sigma54_activ_2 PF14532.1 gi|55377873|ref|YP_135723.1| - 0.028 14.4 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain KAP_NTPase PF07693.9 gi|55377873|ref|YP_135723.1| - 0.031 13.2 0.0 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 KAP family P-loop domain AIG1 PF04548.11 gi|55377873|ref|YP_135723.1| - 0.033 13.2 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 AIG1 family cobW PF02492.14 gi|55377873|ref|YP_135723.1| - 0.035 13.5 0.0 0.088 12.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Flagellin_IN PF07196.8 gi|55377873|ref|YP_135723.1| - 0.043 13.7 0.2 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif AAA_30 PF13604.1 gi|55377873|ref|YP_135723.1| - 0.048 13.2 0.5 0.099 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|55377873|ref|YP_135723.1| - 0.053 13.6 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.7 gi|55377873|ref|YP_135723.1| - 0.061 12.3 0.7 0.92 8.4 0.2 2.7 1 1 1 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|55377873|ref|YP_135723.1| - 0.065 14.0 0.3 0.19 12.5 0.2 2.2 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|55377873|ref|YP_135723.1| - 0.068 12.6 0.4 0.92 8.9 0.2 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase Sec2p PF06428.6 gi|55377873|ref|YP_135723.1| - 0.1 12.4 0.7 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF772 PF05598.6 gi|55377874|ref|YP_135724.1| - 0.0057 16.5 0.2 0.009 15.8 0.1 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|55377875|ref|YP_135725.1| - 0.0046 16.5 0.1 0.0049 16.4 0.1 1.0 1 0 0 1 1 1 1 Transposase DDE domain DUF217 PF02697.9 gi|55377876|ref|YP_135726.1| - 0.00029 21.0 3.5 0.00037 20.6 2.4 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|55377876|ref|YP_135726.1| - 0.071 13.0 1.7 0.61 10.0 0.2 2.5 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family 3HCDH_N PF02737.13 gi|55377876|ref|YP_135726.1| - 0.13 11.9 0.9 0.14 11.8 0.7 1.0 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PIN PF01850.16 gi|55377877|ref|YP_135727.1| - 4.5e-13 49.5 0.4 5.2e-13 49.3 0.3 1.0 1 0 0 1 1 1 1 PIN domain TrmB PF01978.14 gi|55377878|ref|YP_135728.1| - 0.00012 21.7 0.1 0.0013 18.3 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|55377878|ref|YP_135728.1| - 0.0018 18.3 0.0 0.0038 17.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|55377878|ref|YP_135728.1| - 0.0044 16.8 0.2 0.039 13.7 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55377878|ref|YP_135728.1| - 0.0066 16.0 0.4 0.49 10.0 0.0 2.7 3 0 0 3 3 3 1 HTH domain HTH_5 PF01022.15 gi|55377878|ref|YP_135728.1| - 0.021 14.4 0.0 0.11 12.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|55377878|ref|YP_135728.1| - 0.068 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_32 PF13565.1 gi|55377879|ref|YP_135729.1| - 4.1e-07 30.6 0.0 5.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|55377879|ref|YP_135729.1| - 1.1e-05 25.4 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_12 PF08461.5 gi|55377879|ref|YP_135729.1| - 8.3e-05 22.2 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|55377879|ref|YP_135729.1| - 0.0017 18.1 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|55377879|ref|YP_135729.1| - 0.0048 16.8 0.0 0.006 16.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_DeoR PF08220.7 gi|55377879|ref|YP_135729.1| - 0.0063 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|55377879|ref|YP_135729.1| - 0.017 14.4 0.0 0.032 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_33 PF13592.1 gi|55377879|ref|YP_135729.1| - 0.017 14.6 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix SAP30_Sin3_bdg PF13867.1 gi|55377879|ref|YP_135729.1| - 0.041 13.7 0.0 0.59 10.0 0.0 2.1 1 1 1 2 2 2 0 Sin3 binding region of histone deacetylase complex subunit SAP30 AAA_10 PF12846.2 gi|55377880|ref|YP_135730.1| - 1.4e-46 159.3 0.3 3.9e-46 157.8 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|55377880|ref|YP_135730.1| - 2.3e-06 27.7 0.4 0.02 15.0 0.1 2.9 1 1 1 2 2 2 2 AAA domain TraG-D_C PF12696.2 gi|55377880|ref|YP_135730.1| - 3.7e-05 23.6 0.3 0.00019 21.3 0.0 2.2 3 0 0 3 3 2 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.4 gi|55377880|ref|YP_135730.1| - 6.2e-05 21.7 1.8 0.00057 18.6 0.1 2.6 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|55377880|ref|YP_135730.1| - 6.6e-05 22.9 2.6 0.064 13.2 0.2 3.1 2 2 1 3 3 3 2 AAA ATPase domain DUF853 PF05872.7 gi|55377880|ref|YP_135730.1| - 0.0047 15.3 0.0 0.0084 14.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) CENP-F_leu_zip PF10473.4 gi|55377880|ref|YP_135730.1| - 0.0093 15.8 0.7 0.017 14.9 0.5 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 T4SS-DNA_transf PF02534.9 gi|55377880|ref|YP_135730.1| - 0.014 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Herpes_pp85 PF04637.7 gi|55377880|ref|YP_135730.1| - 0.028 12.7 0.4 0.044 12.0 0.3 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) DUF87 PF01935.12 gi|55377880|ref|YP_135730.1| - 0.029 14.2 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 KAP_NTPase PF07693.9 gi|55377880|ref|YP_135730.1| - 0.03 13.3 0.0 0.051 12.5 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain Osmo_CC PF08946.5 gi|55377880|ref|YP_135730.1| - 0.044 13.8 0.1 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Osmosensory transporter coiled coil EF1_GNE PF00736.14 gi|55377880|ref|YP_135730.1| - 0.05 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 EF-1 guanine nucleotide exchange domain HSBP1 PF06825.7 gi|55377880|ref|YP_135730.1| - 0.074 12.6 0.6 1.2 8.8 0.1 2.8 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Zot PF05707.7 gi|55377880|ref|YP_135730.1| - 0.093 12.1 0.1 2.6 7.4 0.0 2.4 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DUF241 PF03087.9 gi|55377880|ref|YP_135730.1| - 0.11 11.9 0.2 0.23 10.9 0.2 1.4 1 0 0 1 1 1 0 Arabidopsis protein of unknown function PrgI PF12666.2 gi|55377881|ref|YP_135731.1| - 0.053 13.6 0.7 0.11 12.6 0.5 1.6 1 0 0 1 1 1 0 PrgI family protein Trypan_PARP PF05887.6 gi|55377882|ref|YP_135732.1| - 0.16 11.7 4.9 0.27 11.0 3.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Cwf_Cwc_15 PF04889.7 gi|55377882|ref|YP_135732.1| - 2 8.0 7.7 2.6 7.6 5.4 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein UPF0179 PF03684.8 gi|55377883|ref|YP_135733.1| - 3.8e-51 172.4 0.0 4.2e-51 172.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|55377883|ref|YP_135733.1| - 0.002 18.0 0.6 0.0037 17.2 0.1 1.7 2 0 0 2 2 2 1 Transposase DDE domain PrkA PF06798.7 gi|55377885|ref|YP_135735.1| - 5.7e-78 261.7 8.8 5.7e-78 261.7 6.1 2.5 4 0 0 4 4 4 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|55377885|ref|YP_135735.1| - 2.2e-64 217.3 0.0 3.5e-64 216.7 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain CLTH PF10607.4 gi|55377885|ref|YP_135735.1| - 0.042 13.5 0.3 0.56 9.8 0.2 2.4 2 0 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain AAA_PrkA PF08298.6 gi|55377886|ref|YP_135736.1| - 1.8e-18 66.3 0.0 2.2e-15 56.2 0.0 3.0 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|55377886|ref|YP_135736.1| - 7.4e-08 31.9 0.4 1.7e-07 30.7 0.2 1.7 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_22 PF13401.1 gi|55377886|ref|YP_135736.1| - 0.15 12.2 0.0 0.78 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF444 PF04285.7 gi|55377887|ref|YP_135737.1| - 4.7e-106 354.9 1.8 5.2e-106 354.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) SpoVR PF04293.8 gi|55377888|ref|YP_135738.1| - 1.5e-80 270.6 7.0 6.1e-68 229.1 0.9 2.8 2 1 0 2 2 2 2 SpoVR like protein CBS PF00571.23 gi|55377889|ref|YP_135739.1| - 9.2e-24 82.9 2.9 1.2e-14 53.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain p450 PF00067.17 gi|55377890|ref|YP_135740.1| - 7.7e-78 262.0 0.0 9.9e-78 261.6 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 UPF0047 PF01894.12 gi|55377891|ref|YP_135741.1| - 1.9e-35 121.2 0.0 2.2e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AMP-binding PF00501.23 gi|55377892|ref|YP_135742.1| - 5.2e-88 295.2 0.1 6.1e-88 294.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Caps_synth_CapC PF14102.1 gi|55377893|ref|YP_135743.1| - 4.7e-18 65.4 25.2 4.3e-12 46.2 5.0 2.7 2 0 0 2 2 2 2 Capsule biosynthesis CapC DUF4231 PF14015.1 gi|55377893|ref|YP_135743.1| - 0.057 13.3 0.2 0.057 13.3 0.1 4.3 2 2 3 5 5 5 0 Protein of unknown function (DUF4231) IncA PF04156.9 gi|55377893|ref|YP_135743.1| - 0.95 9.0 0.0 0.95 9.0 0.0 4.8 5 0 0 5 5 5 0 IncA protein Mur_ligase_M PF08245.7 gi|55377894|ref|YP_135744.1| - 1.5e-09 38.1 0.0 2.4e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain DUF867 PF05908.6 gi|55377895|ref|YP_135745.1| - 1.4e-10 40.6 0.0 2.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF867) PsbQ PF05757.6 gi|55377895|ref|YP_135745.1| - 0.2 11.0 1.4 3.5 6.9 0.8 2.3 2 0 0 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) DUF867 PF05908.6 gi|55377896|ref|YP_135746.1| - 4.3e-15 55.3 0.0 6.2e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF867) DUF4468 PF14730.1 gi|55377897|ref|YP_135747.1| - 0.0071 16.0 0.0 0.0081 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4468) with TBP-like fold DUF2116 PF09889.4 gi|55377898|ref|YP_135748.1| - 0.25 11.1 2.9 4.7 7.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTP_transferase PF00483.18 gi|55377899|ref|YP_135749.1| - 1.8e-38 132.2 0.0 2.9e-38 131.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55377899|ref|YP_135749.1| - 2.6e-15 56.8 0.1 4e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|55377899|ref|YP_135749.1| - 3.5e-09 35.7 12.9 0.00042 19.6 0.0 4.3 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|55377899|ref|YP_135749.1| - 0.0018 17.8 0.0 0.0032 17.0 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|55377899|ref|YP_135749.1| - 0.034 13.7 8.3 2.6 7.6 0.0 3.9 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4352 PF11611.3 gi|55377900|ref|YP_135750.1| - 1.5e-09 38.0 0.2 5.3e-07 29.8 0.1 2.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4352) DUF11 PF01345.13 gi|55377900|ref|YP_135750.1| - 0.0063 16.5 1.0 0.13 12.3 0.1 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|55377900|ref|YP_135750.1| - 0.0066 16.4 0.2 3.4 7.7 0.1 3.3 2 1 1 3 3 3 2 CARDB 3HCDH_N PF02737.13 gi|55377901|ref|YP_135751.1| - 1.4e-64 217.1 0.3 2.2e-64 216.4 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|55377901|ref|YP_135751.1| - 1.6e-62 210.8 0.0 2.6e-62 210.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|55377901|ref|YP_135751.1| - 8.5e-50 167.1 1.3 1.5e-31 108.6 0.0 3.6 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|55377901|ref|YP_135751.1| - 1.5e-07 31.2 0.0 2.9e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|55377901|ref|YP_135751.1| - 2.7e-06 27.3 0.6 1.1e-05 25.3 0.2 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|55377901|ref|YP_135751.1| - 0.00067 20.0 3.4 0.009 16.4 2.3 2.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|55377901|ref|YP_135751.1| - 0.017 15.2 0.0 0.058 13.5 0.0 1.9 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region NAD_binding_3 PF03447.11 gi|55377901|ref|YP_135751.1| - 0.07 13.5 0.3 0.21 11.9 0.2 1.9 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|55377902|ref|YP_135752.1| - 1e-50 171.7 3.6 1.8e-50 170.9 2.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55377902|ref|YP_135752.1| - 3.7e-32 111.2 0.7 3.7e-32 111.2 0.5 1.9 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55377902|ref|YP_135752.1| - 5e-23 81.8 5.9 7.8e-23 81.2 4.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55377902|ref|YP_135752.1| - 1.3e-20 72.5 0.1 3.1e-20 71.4 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Sec8_exocyst PF04048.9 gi|55377902|ref|YP_135752.1| - 0.079 12.5 0.3 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain OrfB_Zn_ribbon PF07282.6 gi|55377903|ref|YP_135753.1| - 3.7e-22 77.7 0.3 6.7e-22 76.9 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|55377903|ref|YP_135753.1| - 0.0016 18.2 1.5 0.0027 17.5 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|55377903|ref|YP_135753.1| - 0.064 13.0 2.9 1.3 8.9 0.0 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|55377903|ref|YP_135753.1| - 0.081 12.2 2.5 1.5 8.2 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|55377903|ref|YP_135753.1| - 0.09 12.2 5.1 1.2 8.6 3.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55377903|ref|YP_135753.1| - 0.1 11.8 3.8 0.43 9.8 2.6 1.9 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|55377903|ref|YP_135753.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2387 PF09526.5 gi|55377903|ref|YP_135753.1| - 0.16 11.8 0.6 5.2 7.0 0.0 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|55377903|ref|YP_135753.1| - 0.57 9.9 4.3 0.58 9.9 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_IS605 PF01385.14 gi|55377904|ref|YP_135754.1| - 1.5e-07 31.0 0.0 2.5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Probable transposase Lsr2 PF11774.3 gi|55377904|ref|YP_135754.1| - 0.029 14.2 1.2 0.067 13.1 0.8 1.6 1 0 0 1 1 1 0 Lsr2 Hexapep PF00132.19 gi|55377905|ref|YP_135755.1| - 2.6e-13 48.8 8.6 1.3e-07 30.7 1.3 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55377905|ref|YP_135755.1| - 1.8e-05 24.1 8.0 0.002 17.6 0.9 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|55377905|ref|YP_135755.1| - 0.015 15.5 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal Lamprin PF06403.6 gi|55377905|ref|YP_135755.1| - 0.079 12.7 1.6 0.11 12.2 1.1 1.2 1 0 0 1 1 1 0 Lamprin HhH-GPD PF00730.20 gi|55377906|ref|YP_135756.1| - 1.1e-16 61.0 0.0 1.5e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_33 PF13592.1 gi|55377906|ref|YP_135756.1| - 0.014 14.9 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HHH_5 PF14520.1 gi|55377906|ref|YP_135756.1| - 0.066 13.3 0.1 0.17 12.0 0.1 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain RimK PF08443.6 gi|55377907|ref|YP_135757.1| - 4.6e-33 114.2 0.0 8.4e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|55377907|ref|YP_135757.1| - 7.6e-12 45.3 0.0 1.5e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Zn_protease PF05618.6 gi|55377907|ref|YP_135757.1| - 1.2e-10 41.1 0.1 1.3e-07 31.4 0.0 2.5 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease ATP-grasp_4 PF13535.1 gi|55377907|ref|YP_135757.1| - 3.2e-09 36.7 0.0 6.2e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|55377907|ref|YP_135757.1| - 3.7e-09 35.9 0.0 7.2e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55377907|ref|YP_135757.1| - 0.00048 18.9 0.0 0.016 13.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Asp_protease_2 PF13650.1 gi|55377907|ref|YP_135757.1| - 0.064 13.7 1.0 0.22 12.0 0.7 1.9 1 0 0 1 1 1 0 Aspartyl protease AstE_AspA PF04952.9 gi|55377908|ref|YP_135758.1| - 1.1e-65 221.4 0.0 1.2e-65 221.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.17 gi|55377909|ref|YP_135759.1| - 4.2e-23 81.4 3.8 4.7e-23 81.3 2.7 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|55377909|ref|YP_135759.1| - 0.017 15.2 3.3 0.025 14.6 2.3 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|55377909|ref|YP_135759.1| - 0.12 11.9 2.5 0.17 11.3 1.7 1.3 1 0 0 1 1 1 0 PgaD-like protein Sdh_cyt PF01127.17 gi|55377910|ref|YP_135760.1| - 3.2e-10 39.8 6.4 3.9e-10 39.6 4.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2517 PF10725.4 gi|55377910|ref|YP_135760.1| - 0.52 10.0 2.2 1.3 8.7 1.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2517) Fer2_3 PF13085.1 gi|55377911|ref|YP_135761.1| - 6.7e-33 112.7 0.1 5e-32 109.9 0.0 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|55377911|ref|YP_135761.1| - 1.1e-11 44.5 4.3 3.1e-11 43.1 3.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55377911|ref|YP_135761.1| - 1.5e-06 28.5 3.1 1.9e-06 28.1 0.5 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|55377911|ref|YP_135761.1| - 4.8e-06 26.8 4.5 1.3e-05 25.3 3.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55377911|ref|YP_135761.1| - 7.8e-06 26.0 2.4 7.8e-06 26.0 1.7 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55377911|ref|YP_135761.1| - 5e-05 23.0 7.0 0.00015 21.4 4.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55377911|ref|YP_135761.1| - 0.00054 20.3 13.1 0.0094 16.3 0.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55377911|ref|YP_135761.1| - 0.011 15.6 1.1 0.011 15.6 0.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|55377911|ref|YP_135761.1| - 0.013 16.2 11.4 0.064 13.9 1.1 3.4 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|55377911|ref|YP_135761.1| - 0.034 13.7 6.8 0.6 9.7 0.3 2.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Rhamno_transf PF11316.3 gi|55377911|ref|YP_135761.1| - 0.061 12.5 1.0 0.12 11.5 0.7 1.5 1 0 0 1 1 1 0 Putative rhamnosyl transferase Fer4_6 PF12837.2 gi|55377911|ref|YP_135761.1| - 0.57 10.1 9.9 0.61 10.0 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|55377911|ref|YP_135761.1| - 1.6 8.4 9.8 5.4 6.7 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55377911|ref|YP_135761.1| - 6.6 7.3 9.7 7.7 7.1 0.2 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|55377911|ref|YP_135761.1| - 7.7 7.1 13.2 1 9.8 1.1 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain PAS_3 PF08447.6 gi|55377912|ref|YP_135762.1| - 9.1e-33 112.2 0.7 5e-15 55.3 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|55377912|ref|YP_135762.1| - 2.2e-23 82.5 0.7 2.7e-10 40.5 0.0 2.7 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|55377912|ref|YP_135762.1| - 3.2e-16 59.1 0.4 2.1e-07 30.6 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|55377912|ref|YP_135762.1| - 1.1e-15 57.6 4.7 4.4e-08 33.1 0.2 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|55377912|ref|YP_135762.1| - 8.4e-15 54.4 0.0 1.6e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|55377912|ref|YP_135762.1| - 5.1e-12 45.7 0.0 5e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|55377912|ref|YP_135762.1| - 1.7e-10 40.6 0.4 4.5e-10 39.3 0.3 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|55377912|ref|YP_135762.1| - 6.2e-08 32.2 0.2 0.015 15.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|55377912|ref|YP_135762.1| - 7.5e-06 25.7 0.3 2.2e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF2092 PF09865.4 gi|55377912|ref|YP_135762.1| - 0.13 11.3 0.2 0.53 9.3 0.0 1.9 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2092) IncA PF04156.9 gi|55377912|ref|YP_135762.1| - 0.79 9.2 2.5 1.2 8.7 1.7 1.2 1 0 0 1 1 1 0 IncA protein FAD_binding_2 PF00890.19 gi|55377913|ref|YP_135763.1| - 3.6e-121 404.8 7.8 5.4e-121 404.3 5.4 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|55377913|ref|YP_135763.1| - 9.3e-40 135.4 1.1 1.5e-39 134.7 0.8 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|55377913|ref|YP_135763.1| - 5.6e-06 25.4 8.5 2.5e-05 23.3 3.7 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|55377913|ref|YP_135763.1| - 3.4e-05 22.5 1.0 5.9e-05 21.7 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|55377913|ref|YP_135763.1| - 6.5e-05 22.8 13.6 0.0073 16.1 7.9 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55377913|ref|YP_135763.1| - 0.00011 21.2 4.0 0.00036 19.5 2.7 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|55377913|ref|YP_135763.1| - 0.00043 19.4 4.4 0.00043 19.4 3.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|55377913|ref|YP_135763.1| - 0.0012 18.0 2.3 0.0076 15.3 0.3 2.7 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|55377913|ref|YP_135763.1| - 0.0088 15.1 0.9 0.02 13.9 0.6 1.6 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|55377913|ref|YP_135763.1| - 0.044 13.3 0.1 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|55377913|ref|YP_135763.1| - 0.057 13.8 0.9 0.18 12.2 0.7 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Cupin_2 PF07883.6 gi|55377914|ref|YP_135764.1| - 3.4e-11 42.4 0.9 4.3e-11 42.1 0.6 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|55377914|ref|YP_135764.1| - 1.1e-05 24.6 0.2 1.4e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|55377914|ref|YP_135764.1| - 0.00011 21.8 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.2 gi|55377914|ref|YP_135764.1| - 0.00042 19.9 0.1 0.00046 19.8 0.1 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|55377914|ref|YP_135764.1| - 0.0016 18.1 0.0 0.0018 17.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|55377914|ref|YP_135764.1| - 0.003 17.1 0.0 0.0032 17.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1498 PF07385.7 gi|55377914|ref|YP_135764.1| - 0.0078 15.3 0.0 0.0088 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1498) EutQ PF06249.7 gi|55377914|ref|YP_135764.1| - 0.013 15.0 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ KduI PF04962.7 gi|55377914|ref|YP_135764.1| - 0.023 13.7 0.2 0.04 12.9 0.1 1.5 1 1 0 1 1 1 0 KduI/IolB family Prok-RING_1 PF14446.1 gi|55377915|ref|YP_135765.1| - 0.0067 16.1 1.3 0.011 15.4 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|55377915|ref|YP_135765.1| - 0.41 10.6 2.0 0.35 10.9 0.4 1.7 2 1 0 2 2 2 0 zinc-finger DBI_PRT PF02277.12 gi|55377916|ref|YP_135766.1| - 1.1e-15 57.5 3.1 2.1e-15 56.6 2.2 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase GATase_3 PF07685.9 gi|55377917|ref|YP_135767.1| - 3e-30 104.9 0.4 4.1e-30 104.4 0.3 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|55377917|ref|YP_135767.1| - 9e-17 61.1 0.1 4.3e-16 58.9 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|55377917|ref|YP_135767.1| - 1.7e-07 31.0 0.3 0.0014 18.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain SNO PF01174.14 gi|55377917|ref|YP_135767.1| - 0.024 14.2 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family SNF2_N PF00176.18 gi|55377917|ref|YP_135767.1| - 0.13 10.9 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 SNF2 family N-terminal domain Peptidase_S51 PF03575.12 gi|55377917|ref|YP_135767.1| - 0.15 11.7 0.0 0.41 10.3 0.0 1.7 2 0 0 2 2 2 0 Peptidase family S51 DisA_N PF02457.11 gi|55377918|ref|YP_135768.1| - 9.5e-26 89.3 0.0 1.6e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.13 gi|55377919|ref|YP_135769.1| - 1.2e-19 70.4 1.7 2.6e-19 69.3 1.2 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|55377919|ref|YP_135769.1| - 0.0005 19.6 5.6 0.0034 17.0 0.1 3.0 3 0 0 3 3 3 2 Conserved TM helix Fimbrial_PilY2 PF14481.1 gi|55377919|ref|YP_135769.1| - 0.022 14.1 0.0 0.05 13.0 0.0 1.6 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Hexapep PF00132.19 gi|55377920|ref|YP_135770.1| - 2.4e-09 36.2 7.6 9.6e-09 34.3 0.7 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55377920|ref|YP_135770.1| - 1.6e-07 30.7 5.0 4.2e-06 26.2 1.0 3.1 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase TrkH PF02386.11 gi|55377921|ref|YP_135771.1| - 1.1e-47 162.3 13.1 3e-47 160.9 9.1 1.6 1 1 0 1 1 1 1 Cation transport protein GARS_A PF01071.14 gi|55377922|ref|YP_135772.1| - 1.3e-52 178.2 0.0 2.5e-52 177.2 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|55377922|ref|YP_135772.1| - 1.6e-24 86.2 0.1 5.2e-24 84.6 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|55377922|ref|YP_135772.1| - 3.8e-20 72.3 0.0 8.2e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|55377922|ref|YP_135772.1| - 1.1e-15 57.5 2.9 3.1e-14 52.8 0.8 3.0 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|55377922|ref|YP_135772.1| - 1.1e-07 30.8 0.0 4.2e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|55377922|ref|YP_135772.1| - 2.5e-06 27.4 0.0 4.7e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|55377922|ref|YP_135772.1| - 0.02 14.2 0.0 0.034 13.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF4231 PF14015.1 gi|55377923|ref|YP_135773.1| - 0.056 13.4 0.3 0.063 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) Thioredox_DsbH PF03190.10 gi|55377924|ref|YP_135774.1| - 2.2e-71 238.8 0.0 3.7e-71 238.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|55377924|ref|YP_135774.1| - 2e-11 43.7 0.1 6e-11 42.2 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|55377924|ref|YP_135774.1| - 1.4e-06 27.5 0.2 0.016 14.2 0.1 2.4 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|55377924|ref|YP_135774.1| - 0.00089 18.3 0.0 0.082 11.9 0.0 2.8 3 0 0 3 3 3 1 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|55377924|ref|YP_135774.1| - 0.0042 17.2 0.0 0.0098 16.0 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|55377925|ref|YP_135775.1| - 0.0055 16.3 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Glyco_hydro_3 PF00933.16 gi|55377926|ref|YP_135776.1| - 2.6e-86 289.3 0.0 3.9e-86 288.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|55377926|ref|YP_135776.1| - 1e-60 205.0 4.4 1.9e-60 204.2 0.7 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|55377926|ref|YP_135776.1| - 6.3e-20 70.8 0.1 1.2e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Glyco_transf_36 PF06165.6 gi|55377926|ref|YP_135776.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 36 HATPase_c PF02518.21 gi|55377927|ref|YP_135777.1| - 2.6e-16 59.2 2.9 6.5e-16 58.0 1.3 2.1 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55377927|ref|YP_135777.1| - 3.4e-12 46.1 0.7 7.4e-12 45.0 0.5 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|55377927|ref|YP_135777.1| - 1.2e-09 38.2 0.1 3.4e-09 36.7 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|55377927|ref|YP_135777.1| - 3.9e-07 29.6 0.0 1.3e-06 28.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|55377927|ref|YP_135777.1| - 1.2e-06 28.2 0.1 2.4e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|55377927|ref|YP_135777.1| - 5.2e-05 23.5 0.4 0.00019 21.7 0.1 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|55377927|ref|YP_135777.1| - 0.0019 17.8 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|55377927|ref|YP_135777.1| - 0.051 13.8 0.1 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 PAS domain DUF2690 PF10901.3 gi|55377927|ref|YP_135777.1| - 0.092 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2690) AAA_26 PF13500.1 gi|55377929|ref|YP_135779.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain Lactamase_B PF00753.22 gi|55377930|ref|YP_135780.1| - 4.5e-24 85.1 10.5 6.1e-24 84.7 7.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55377930|ref|YP_135780.1| - 3.3e-05 23.5 3.7 5.8e-05 22.7 2.6 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55377930|ref|YP_135780.1| - 0.033 13.8 3.8 0.049 13.3 2.7 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Gp5_C PF06715.7 gi|55377930|ref|YP_135780.1| - 0.096 12.6 1.3 3.2 7.8 0.3 2.9 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) HalX PF08663.5 gi|55377931|ref|YP_135781.1| - 3.4e-25 87.8 6.7 3.4e-25 87.8 4.7 2.3 3 0 0 3 3 3 1 HalX domain Response_reg PF00072.19 gi|55377931|ref|YP_135781.1| - 7.9e-20 70.9 0.2 1.3e-19 70.2 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_14 PF08484.6 gi|55377931|ref|YP_135781.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.4 1 1 0 1 1 1 0 C-methyltransferase C-terminal domain DUF3618 PF12277.3 gi|55377931|ref|YP_135781.1| - 0.93 9.5 5.5 7.8 6.6 0.1 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3618) Pup PF05639.6 gi|55377931|ref|YP_135781.1| - 2.6 8.5 6.1 8 7.0 0.0 3.1 3 0 0 3 3 3 0 Pup-like protein KaiC PF06745.8 gi|55377932|ref|YP_135782.1| - 8.9e-06 24.9 0.0 1.8e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 KaiC Peptidase_S32 PF05579.8 gi|55377932|ref|YP_135782.1| - 0.037 13.0 0.3 0.051 12.5 0.2 1.2 1 0 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 ACP_syn_III PF08545.5 gi|55377932|ref|YP_135782.1| - 0.11 12.1 0.8 0.21 11.2 0.1 1.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thy1 PF02511.10 gi|55377933|ref|YP_135783.1| - 9.3e-65 217.5 0.0 1.1e-64 217.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein eIF-5_eIF-2B PF01873.12 gi|55377935|ref|YP_135785.1| - 2e-34 117.9 0.0 2.3e-34 117.7 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.8 gi|55377935|ref|YP_135785.1| - 0.39 10.2 3.3 3.4 7.2 2.4 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|55377935|ref|YP_135785.1| - 0.84 9.2 2.8 4.2 6.9 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55377936|ref|YP_135786.1| - 0.00012 21.7 0.6 0.17 11.6 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|55377936|ref|YP_135786.1| - 0.0015 18.1 0.6 0.25 11.0 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|55377936|ref|YP_135786.1| - 0.0018 17.8 0.5 0.26 10.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|55377936|ref|YP_135786.1| - 0.0044 16.7 1.4 0.018 14.7 1.0 1.8 1 1 1 2 2 2 1 zinc-ribbons HypA PF01155.14 gi|55377936|ref|YP_135786.1| - 0.0049 16.5 0.2 0.005 16.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1 PF03811.8 gi|55377936|ref|YP_135786.1| - 0.01 15.3 0.6 2.6 7.6 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_4 PF14570.1 gi|55377936|ref|YP_135786.1| - 0.01 15.3 1.6 2.7 7.6 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|55377936|ref|YP_135786.1| - 0.014 14.6 0.9 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|55377936|ref|YP_135786.1| - 0.022 14.3 0.9 0.03 13.9 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2296 PF10058.4 gi|55377936|ref|YP_135786.1| - 0.023 14.4 1.1 0.039 13.7 0.8 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) RNHCP PF12647.2 gi|55377936|ref|YP_135786.1| - 0.025 14.3 0.7 0.031 14.0 0.5 1.3 1 0 0 1 1 1 0 RNHCP domain NMD3 PF04981.8 gi|55377936|ref|YP_135786.1| - 0.026 13.6 0.1 0.028 13.5 0.1 1.0 1 0 0 1 1 1 0 NMD3 family DZR PF12773.2 gi|55377936|ref|YP_135786.1| - 0.028 14.2 2.6 0.066 13.0 1.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|55377936|ref|YP_135786.1| - 0.029 14.3 1.8 4.6 7.3 0.5 2.2 2 0 0 2 2 2 0 zinc-finger CpXC PF14353.1 gi|55377936|ref|YP_135786.1| - 0.03 14.3 0.5 1.2 9.1 0.1 2.0 2 0 0 2 2 2 0 CpXC protein Elf1 PF05129.8 gi|55377936|ref|YP_135786.1| - 0.031 13.9 1.5 0.062 12.9 0.5 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.7 gi|55377936|ref|YP_135786.1| - 0.035 14.1 0.3 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-3CxxC PF13695.1 gi|55377936|ref|YP_135786.1| - 0.035 14.3 1.7 0.82 9.9 1.2 2.1 1 1 0 1 1 1 0 Zinc-binding domain DUF329 PF03884.9 gi|55377936|ref|YP_135786.1| - 0.035 13.6 0.9 2.5 7.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-ribbon_3 PF13248.1 gi|55377936|ref|YP_135786.1| - 0.037 13.2 1.4 0.68 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|55377936|ref|YP_135786.1| - 0.04 13.5 1.6 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4379 PF14311.1 gi|55377936|ref|YP_135786.1| - 0.04 13.7 2.5 0.8 9.5 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) Opy2 PF09463.5 gi|55377936|ref|YP_135786.1| - 0.047 13.7 0.7 8 6.6 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF1610 PF07754.6 gi|55377936|ref|YP_135786.1| - 0.051 13.6 4.5 0.59 10.3 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Dehyd-heme_bind PF09098.5 gi|55377936|ref|YP_135786.1| - 0.069 12.6 0.1 0.069 12.6 0.1 1.1 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding UPF0515 PF15135.1 gi|55377936|ref|YP_135786.1| - 0.075 12.0 0.4 0.084 11.9 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 zf-ISL3 PF14690.1 gi|55377936|ref|YP_135786.1| - 0.078 13.0 1.0 4 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|55377936|ref|YP_135786.1| - 0.094 12.6 0.3 1.9 8.4 0.0 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Sgf11 PF08209.6 gi|55377936|ref|YP_135786.1| - 0.1 11.9 2.8 1.9 7.8 0.4 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_KTR PF14205.1 gi|55377936|ref|YP_135786.1| - 0.1 12.0 1.3 6 6.4 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich KTR Zn_Tnp_IS1595 PF12760.2 gi|55377936|ref|YP_135786.1| - 0.12 12.1 4.4 0.32 10.8 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain E7 PF00527.13 gi|55377936|ref|YP_135786.1| - 0.13 12.4 1.6 1.3 9.2 0.0 2.0 1 1 1 2 2 2 0 E7 protein, Early protein Ogr_Delta PF04606.7 gi|55377936|ref|YP_135786.1| - 0.14 11.7 1.9 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-CHY PF05495.7 gi|55377936|ref|YP_135786.1| - 0.18 12.0 2.2 0.81 9.8 1.8 1.7 1 1 1 2 2 2 0 CHY zinc finger UPF0547 PF10571.4 gi|55377936|ref|YP_135786.1| - 0.24 11.1 6.2 5 6.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|55377936|ref|YP_135786.1| - 0.48 9.9 4.1 3.4 7.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|55377936|ref|YP_135786.1| - 0.79 8.9 4.5 3.4 6.9 3.3 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|55377936|ref|YP_135786.1| - 0.9 9.5 5.0 15 5.6 3.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|55377936|ref|YP_135786.1| - 1 9.2 6.0 0.8 9.6 0.3 2.2 1 1 1 2 2 2 0 Rubredoxin zf-HYPF PF07503.7 gi|55377936|ref|YP_135786.1| - 1.9 7.9 5.6 4.5 6.7 3.9 1.6 1 1 0 1 1 1 0 HypF finger TFIIB PF00382.14 gi|55377937|ref|YP_135787.1| - 7.4e-37 125.0 0.1 5.7e-18 64.4 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55377937|ref|YP_135787.1| - 1.5e-16 59.3 5.8 5.3e-16 57.6 4.5 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|55377937|ref|YP_135787.1| - 3e-05 23.9 0.0 0.026 14.4 0.0 2.4 1 1 1 2 2 2 2 Cyclin, C-terminal domain A2L_zn_ribbon PF08792.5 gi|55377937|ref|YP_135787.1| - 0.013 14.9 1.7 0.025 14.0 1.2 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|55377937|ref|YP_135787.1| - 0.023 14.1 1.9 0.038 13.4 1.4 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Fe-ADH PF00465.14 gi|55377937|ref|YP_135787.1| - 0.038 12.6 0.2 0.085 11.4 0.0 1.6 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Sigma70_r4 PF04545.11 gi|55377937|ref|YP_135787.1| - 0.042 13.1 0.0 0.17 11.1 0.0 2.1 1 0 0 1 1 1 0 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|55377937|ref|YP_135787.1| - 0.084 12.1 1.1 0.15 11.3 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|55377937|ref|YP_135787.1| - 0.11 12.2 1.7 0.19 11.3 1.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|55377937|ref|YP_135787.1| - 0.12 11.7 0.1 0.26 10.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Zn-ribbon_8 PF09723.5 gi|55377937|ref|YP_135787.1| - 3.4 7.7 5.7 4 7.4 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DUF357 PF04010.8 gi|55377939|ref|YP_135789.1| - 9.4e-29 98.9 0.1 1.1e-28 98.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.9 gi|55377940|ref|YP_135790.1| - 3.4e-24 85.8 0.0 5.3e-24 85.2 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55377940|ref|YP_135790.1| - 3.6e-13 49.7 0.3 1.9e-11 44.1 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55377940|ref|YP_135790.1| - 2.6e-12 47.2 0.0 1.4e-08 35.0 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55377940|ref|YP_135790.1| - 1.7e-06 27.1 0.3 0.037 12.9 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55377940|ref|YP_135790.1| - 1.4e-05 24.1 1.8 0.0006 18.7 0.0 3.0 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|55377940|ref|YP_135790.1| - 3.6e-05 22.4 0.0 0.021 13.2 0.0 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|55377940|ref|YP_135790.1| - 0.00022 21.2 0.0 0.0022 17.9 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|55377940|ref|YP_135790.1| - 0.0012 19.0 0.0 0.024 14.8 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|55377940|ref|YP_135790.1| - 0.012 14.7 0.3 0.034 13.2 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|55377940|ref|YP_135790.1| - 0.033 13.2 0.0 0.43 9.6 0.0 2.2 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|55377940|ref|YP_135790.1| - 0.042 12.6 0.8 0.7 8.6 0.0 2.9 4 0 0 4 4 4 0 Glucose inhibited division protein A RibD_C PF01872.12 gi|55377942|ref|YP_135792.1| - 4.3e-51 173.3 0.0 4.8e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Tir_receptor_N PF07490.6 gi|55377942|ref|YP_135792.1| - 0.025 14.1 0.1 0.033 13.7 0.1 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus tRNA_anti-codon PF01336.20 gi|55377944|ref|YP_135794.1| - 3e-06 26.9 1.9 0.48 10.3 0.0 4.2 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Metallophos_2 PF12850.2 gi|55377946|ref|YP_135796.1| - 6.3e-06 26.1 0.4 1.3e-05 25.1 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55377946|ref|YP_135796.1| - 0.0037 16.6 0.9 0.065 12.6 0.0 2.2 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase FBPase PF00316.15 gi|55377947|ref|YP_135797.1| - 4.3e-31 107.9 0.0 3e-30 105.1 0.0 1.9 1 1 0 1 1 1 1 Fructose-1-6-bisphosphatase DEAD_assoc PF08494.6 gi|55377948|ref|YP_135798.1| - 2.4e-38 131.7 0.0 6.1e-38 130.4 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|55377948|ref|YP_135798.1| - 6e-31 107.2 0.0 4.1e-30 104.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|55377948|ref|YP_135798.1| - 1.4e-17 63.3 0.1 3.7e-17 61.9 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|55377948|ref|YP_135798.1| - 1e-07 31.9 0.0 2.2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|55377948|ref|YP_135798.1| - 0.00025 20.7 0.4 0.029 14.1 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain SNF2_N PF00176.18 gi|55377948|ref|YP_135798.1| - 0.00036 19.4 0.0 0.0013 17.6 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain HypA PF01155.14 gi|55377948|ref|YP_135798.1| - 0.12 12.0 0.2 0.47 10.1 0.1 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|55377948|ref|YP_135798.1| - 0.13 12.2 1.2 0.26 11.2 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Spo0M PF07070.6 gi|55377949|ref|YP_135799.1| - 3.3e-63 212.9 0.1 4.1e-63 212.6 0.1 1.1 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.17 gi|55377949|ref|YP_135799.1| - 0.02 14.9 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain PAS_4 PF08448.5 gi|55377950|ref|YP_135800.1| - 1.5e-28 98.9 3.9 3.8e-14 52.6 0.1 2.6 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|55377950|ref|YP_135800.1| - 2.6e-26 91.9 0.2 7.5e-13 48.7 0.0 2.4 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|55377950|ref|YP_135800.1| - 7.8e-24 83.8 0.0 4.8e-23 81.2 0.0 2.1 1 1 1 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|55377950|ref|YP_135800.1| - 5.4e-16 58.3 0.1 2.8e-09 36.7 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|55377950|ref|YP_135800.1| - 4.1e-14 51.8 0.1 1.1e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|55377950|ref|YP_135800.1| - 6.3e-09 35.8 0.2 0.0011 18.8 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|55377950|ref|YP_135800.1| - 0.0017 18.5 0.2 0.011 15.9 0.0 2.4 3 0 0 3 3 3 1 PAS domain OKR_DC_1_N PF03709.10 gi|55377950|ref|YP_135800.1| - 0.006 16.6 0.0 0.023 14.7 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|55377950|ref|YP_135800.1| - 0.094 12.8 0.0 9.8 6.3 0.0 2.7 2 0 0 2 2 2 0 PAS fold DZR PF12773.2 gi|55377951|ref|YP_135801.1| - 4.1e-05 23.3 1.0 6.3e-05 22.7 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55377951|ref|YP_135801.1| - 4.7e-05 22.7 2.9 8.1e-05 21.9 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55377951|ref|YP_135801.1| - 7.7e-05 21.7 3.9 0.00013 21.0 2.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Lipase_3 PF01764.20 gi|55377951|ref|YP_135801.1| - 0.034 13.7 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) NfeD PF01957.13 gi|55377951|ref|YP_135801.1| - 0.041 14.0 0.2 0.041 14.0 0.1 1.8 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Prok-RING_1 PF14446.1 gi|55377951|ref|YP_135801.1| - 0.052 13.2 0.9 0.078 12.7 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|55377951|ref|YP_135801.1| - 0.17 11.1 3.3 5.4 6.2 0.4 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|55377951|ref|YP_135801.1| - 0.17 11.8 2.8 0.37 10.7 1.9 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.1 gi|55377951|ref|YP_135801.1| - 0.39 10.7 1.5 20 5.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|55377951|ref|YP_135801.1| - 0.4 10.4 6.4 0.75 9.5 4.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|55377951|ref|YP_135801.1| - 0.42 10.6 7.9 3.4 7.7 0.4 2.3 1 1 1 2 2 2 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|55377951|ref|YP_135801.1| - 0.44 10.0 3.6 14 5.3 0.8 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|55377951|ref|YP_135801.1| - 0.44 10.2 5.7 1.4 8.6 1.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|55377951|ref|YP_135801.1| - 0.62 9.9 5.4 1.7 8.5 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55377951|ref|YP_135801.1| - 0.67 9.9 5.7 2 8.4 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.4 gi|55377951|ref|YP_135801.1| - 1.2 9.0 4.4 1.9 8.3 0.1 2.8 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-IS66 PF13005.2 gi|55377951|ref|YP_135801.1| - 1.4 8.9 5.8 6.3 6.8 0.7 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 MutS_V PF00488.16 gi|55377952|ref|YP_135802.1| - 3.8e-11 42.8 0.0 5.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|55377952|ref|YP_135802.1| - 0.00023 20.6 1.6 0.02 14.3 0.0 3.2 3 1 1 4 4 4 1 AAA-like domain AAA_28 PF13521.1 gi|55377952|ref|YP_135802.1| - 0.005 16.8 0.1 0.005 16.8 0.0 2.6 4 0 0 4 4 4 1 AAA domain AAA_21 PF13304.1 gi|55377952|ref|YP_135802.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|55377952|ref|YP_135802.1| - 0.052 13.4 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.3 gi|55377952|ref|YP_135802.1| - 0.068 13.2 0.1 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif LTXXQ PF07813.7 gi|55377952|ref|YP_135802.1| - 0.14 12.6 1.2 0.62 10.5 0.2 2.2 2 0 0 2 2 2 0 LTXXQ motif family protein AAA_29 PF13555.1 gi|55377952|ref|YP_135802.1| - 0.15 11.6 0.0 0.36 10.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55377952|ref|YP_135802.1| - 0.19 12.0 0.0 0.42 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Polyketide_cyc2 PF10604.4 gi|55377953|ref|YP_135803.1| - 3.8e-17 62.7 0.2 4.4e-17 62.5 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55377953|ref|YP_135803.1| - 1.2e-08 35.0 0.0 1.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|55377953|ref|YP_135803.1| - 4.9e-05 23.4 0.0 8.4e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.8 gi|55377953|ref|YP_135803.1| - 0.037 13.6 0.0 0.15 11.7 0.0 2.1 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) DUF1652 PF07865.6 gi|55377954|ref|YP_135804.1| - 0.13 11.9 0.1 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) E1-E2_ATPase PF00122.15 gi|55377956|ref|YP_135806.1| - 4.2e-42 143.7 2.2 4.2e-42 143.7 1.5 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|55377956|ref|YP_135806.1| - 6.1e-36 124.8 5.8 6.1e-36 124.8 4.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|55377956|ref|YP_135806.1| - 1.2e-13 51.7 0.0 2.3e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|55377956|ref|YP_135806.1| - 1.8e-06 27.9 0.0 4.8e-06 26.6 0.0 1.8 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|55377956|ref|YP_135806.1| - 3.6e-05 23.4 0.6 5e-05 22.9 0.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|55377956|ref|YP_135806.1| - 0.0013 19.2 0.2 0.0032 17.9 0.2 1.6 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.1 gi|55377957|ref|YP_135807.1| - 3.6e-47 160.6 17.0 4.6e-47 160.3 11.8 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF4574 PF15141.1 gi|55377958|ref|YP_135808.1| - 0.12 12.1 0.7 0.62 9.8 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4574) Copper-bind PF00127.15 gi|55377959|ref|YP_135809.1| - 1.8e-35 121.0 1.2 1.3e-17 63.7 0.1 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|55377959|ref|YP_135809.1| - 0.0093 15.8 8.3 0.0093 15.8 5.8 2.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4198 PF10670.4 gi|55377959|ref|YP_135809.1| - 0.011 15.6 0.1 3.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) SPC25 PF06703.6 gi|55377959|ref|YP_135809.1| - 0.035 13.7 0.1 0.058 12.9 0.1 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) COX2 PF00116.15 gi|55377960|ref|YP_135810.1| - 4.9e-24 84.4 0.2 6.9e-24 83.9 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|55377960|ref|YP_135810.1| - 4.5e-05 23.2 0.0 7.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|55377960|ref|YP_135810.1| - 0.052 13.0 0.4 0.089 12.3 0.3 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|55377961|ref|YP_135811.1| - 2.3e-74 250.6 49.4 2.3e-74 250.6 34.3 1.7 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I CARDB PF07705.6 gi|55377962|ref|YP_135812.1| - 0.0014 18.6 0.3 0.002 18.1 0.2 1.3 1 0 0 1 1 1 1 CARDB zf-ribbon_3 PF13248.1 gi|55377963|ref|YP_135813.1| - 7.4e-06 24.9 4.5 1.2e-05 24.3 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55377963|ref|YP_135813.1| - 1.3e-05 24.5 3.4 2e-05 23.9 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55377963|ref|YP_135813.1| - 5.1e-05 22.9 0.8 8.3e-05 22.3 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|55377963|ref|YP_135813.1| - 0.01 15.4 0.1 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|55377963|ref|YP_135813.1| - 0.056 13.3 3.1 0.13 12.2 2.1 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|55377963|ref|YP_135813.1| - 0.39 10.4 3.3 5.3 6.8 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|55377964|ref|YP_135814.1| - 9.1e-12 43.8 14.9 9.1e-06 24.7 1.2 4.0 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.2 gi|55377964|ref|YP_135814.1| - 1.9e-11 43.5 8.1 1.9e-11 43.5 5.6 2.4 2 0 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55377964|ref|YP_135814.1| - 2.4e-09 36.3 9.7 0.00013 21.3 0.2 3.2 3 0 0 3 3 3 2 zinc-ribbon domain FHA PF00498.21 gi|55377964|ref|YP_135814.1| - 3.2e-07 30.3 0.0 6.1e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 FHA domain UPF0547 PF10571.4 gi|55377964|ref|YP_135814.1| - 0.00043 19.9 5.4 0.0059 16.2 0.4 3.5 4 0 0 4 4 3 2 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|55377964|ref|YP_135814.1| - 0.00049 19.8 8.4 0.15 11.8 0.2 3.2 3 0 0 3 3 3 2 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|55377964|ref|YP_135814.1| - 0.0011 18.4 2.1 0.72 9.4 0.0 3.8 3 0 0 3 3 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55377964|ref|YP_135814.1| - 0.0028 17.5 19.2 0.013 15.4 0.3 4.5 4 1 0 5 5 4 2 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|55377964|ref|YP_135814.1| - 0.0045 16.6 1.9 2.2 8.0 0.0 3.7 3 0 0 3 3 3 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|55377964|ref|YP_135814.1| - 0.0071 16.0 11.6 0.0088 15.7 0.7 3.9 4 0 0 4 4 3 1 Nudix N-terminal zf-DHHC PF01529.15 gi|55377964|ref|YP_135814.1| - 0.17 11.2 1.6 10 5.4 0.1 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase Rad50_zn_hook PF04423.9 gi|55377964|ref|YP_135814.1| - 0.2 11.1 3.7 5.5 6.5 0.2 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.1 gi|55377964|ref|YP_135814.1| - 1.1 8.9 10.4 4.2 7.1 0.3 3.7 2 1 2 4 4 4 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|55377964|ref|YP_135814.1| - 1.3 9.0 23.0 3.2 7.8 0.2 5.0 2 1 3 5 5 5 0 zinc-finger Prok-RING_1 PF14446.1 gi|55377964|ref|YP_135814.1| - 2.2 8.0 22.7 4.7 7.0 2.6 3.3 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|55377964|ref|YP_135814.1| - 2.3 8.1 15.6 9.2 6.2 1.0 4.1 2 2 1 3 3 3 0 IBR domain NOB1_Zn_bind PF08772.6 gi|55377964|ref|YP_135814.1| - 2.5 7.9 4.8 5.2 6.9 0.2 2.4 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-Di19 PF05605.7 gi|55377964|ref|YP_135814.1| - 2.9 8.0 8.8 11 6.2 0.1 3.5 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1 PF03811.8 gi|55377964|ref|YP_135814.1| - 3.7 7.1 7.1 20 4.7 0.1 3.4 3 0 0 3 3 3 0 InsA N-terminal domain zf-RING_2 PF13639.1 gi|55377964|ref|YP_135814.1| - 3.9 7.3 9.7 3.7 7.4 0.2 3.1 2 1 0 3 3 3 0 Ring finger domain OrfB_Zn_ribbon PF07282.6 gi|55377964|ref|YP_135814.1| - 4.6 6.9 16.5 2 8.1 0.6 3.7 2 1 1 3 3 3 0 Putative transposase DNA-binding domain PP2C_2 PF13672.1 gi|55377965|ref|YP_135815.1| - 8.9e-12 44.8 0.5 1.5e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|55377965|ref|YP_135815.1| - 6.4e-10 38.8 0.2 6.3e-09 35.5 0.1 2.5 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|55377965|ref|YP_135815.1| - 1e-05 25.3 5.1 5.5e-05 22.9 3.5 2.0 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.20 gi|55377966|ref|YP_135816.1| - 5.1e-31 107.7 0.0 6.4e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|55377966|ref|YP_135816.1| - 2.4e-15 56.2 0.0 3.1e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.21 gi|55377966|ref|YP_135816.1| - 1.7e-06 28.0 0.0 4.3e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 FHA domain RIO1 PF01163.17 gi|55377966|ref|YP_135816.1| - 0.0073 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|55377966|ref|YP_135816.1| - 0.017 14.8 0.5 0.031 14.0 0.1 1.7 2 0 0 2 2 2 0 Phosphotransferase enzyme family Kinase-like PF14531.1 gi|55377966|ref|YP_135816.1| - 0.066 12.1 0.0 0.16 10.8 0.0 1.5 2 0 0 2 2 2 0 Kinase-like VWA_2 PF13519.1 gi|55377967|ref|YP_135817.1| - 1.1e-19 71.1 0.7 1.1e-19 71.1 0.5 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|55377967|ref|YP_135817.1| - 5.9e-14 52.1 0.0 1.2e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|55377967|ref|YP_135817.1| - 6.7e-12 45.3 0.0 1.3e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|55377967|ref|YP_135817.1| - 4.5e-06 26.6 0.0 1.1e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.9 gi|55377967|ref|YP_135817.1| - 1.4e-05 24.3 0.0 3.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|55377967|ref|YP_135817.1| - 0.0051 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 vWA found in TerF C terminus MerT PF02411.10 gi|55377968|ref|YP_135818.1| - 0.47 10.2 7.4 0.15 11.8 2.7 2.0 1 1 0 1 1 1 0 MerT mercuric transport protein DUF3179 PF11376.3 gi|55377969|ref|YP_135819.1| - 3.2e-96 321.5 0.0 3.8e-96 321.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Abhydrolase_2 PF02230.11 gi|55377970|ref|YP_135820.1| - 1e-21 77.3 0.0 4.7e-21 75.2 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|55377970|ref|YP_135820.1| - 5.5e-13 48.9 0.0 6.6e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55377970|ref|YP_135820.1| - 8.3e-11 42.1 0.4 3.1e-08 33.7 0.2 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|55377970|ref|YP_135820.1| - 2.3e-07 30.3 0.0 2.7e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|55377970|ref|YP_135820.1| - 0.00021 20.8 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|55377970|ref|YP_135820.1| - 0.00044 19.8 0.0 0.001 18.6 0.0 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold PE-PPE PF08237.6 gi|55377970|ref|YP_135820.1| - 0.0059 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 PE-PPE domain Peptidase_S9 PF00326.16 gi|55377970|ref|YP_135820.1| - 0.013 14.7 0.1 3.5 6.8 0.0 2.4 3 0 0 3 3 3 0 Prolyl oligopeptidase family Cutinase PF01083.17 gi|55377970|ref|YP_135820.1| - 0.019 14.6 0.1 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Cutinase Abhydrolase_3 PF07859.8 gi|55377970|ref|YP_135820.1| - 0.034 13.7 0.2 0.18 11.3 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|55377970|ref|YP_135820.1| - 0.052 12.7 0.0 0.093 11.9 0.0 1.4 1 1 0 1 1 1 0 Esterase PHB depolymerase UPF0058 PF01893.11 gi|55377971|ref|YP_135821.1| - 4.2e-22 77.9 0.4 4.4e-22 77.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|55377972|ref|YP_135822.1| - 2.5e-41 139.7 0.2 3.2e-41 139.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|55377972|ref|YP_135822.1| - 0.028 13.6 0.1 0.055 12.6 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55377972|ref|YP_135822.1| - 0.092 12.2 0.2 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Cwf_Cwc_15 PF04889.7 gi|55377972|ref|YP_135822.1| - 1.9 8.1 6.4 2.1 7.9 4.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein FYDLN_acid PF09538.5 gi|55377972|ref|YP_135822.1| - 1.9 9.0 10.6 4 8.0 7.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) OGG_N PF07934.7 gi|55377973|ref|YP_135823.1| - 1.9e-15 56.8 0.0 3.3e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|55377973|ref|YP_135823.1| - 8.5e-13 48.5 0.0 1.4e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Acylphosphatase PF00708.13 gi|55377974|ref|YP_135824.1| - 3.6e-27 94.2 0.3 3.9e-27 94.1 0.2 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1918 PF08940.6 gi|55377974|ref|YP_135824.1| - 0.03 13.6 0.8 0.11 11.8 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1918) BLUF PF04940.7 gi|55377974|ref|YP_135824.1| - 0.086 12.5 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 Sensors of blue-light using FAD Carb_kinase PF01256.12 gi|55377975|ref|YP_135825.1| - 1.6e-44 152.0 0.8 2.3e-44 151.5 0.5 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|55377975|ref|YP_135825.1| - 6.2e-44 149.5 0.6 1.4e-43 148.3 0.1 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|55377975|ref|YP_135825.1| - 7.9e-07 28.4 0.0 1.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MMR_HSR1 PF01926.18 gi|55377976|ref|YP_135826.1| - 5.9e-19 68.1 0.0 1e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|55377976|ref|YP_135826.1| - 9.5e-12 44.7 0.1 2e-11 43.6 0.1 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|55377976|ref|YP_135826.1| - 2.8e-06 26.8 0.3 0.0005 19.5 0.1 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|55377976|ref|YP_135826.1| - 6.9e-05 22.1 0.0 0.055 12.7 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|55377976|ref|YP_135826.1| - 0.00031 21.2 0.1 0.0012 19.2 0.0 2.1 2 1 0 2 2 2 1 Miro-like protein AAA_17 PF13207.1 gi|55377976|ref|YP_135826.1| - 0.00053 20.7 0.3 0.0018 19.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|55377976|ref|YP_135826.1| - 0.0026 17.1 0.0 0.025 13.9 0.0 2.1 2 0 0 2 2 2 1 Ras family AAA_18 PF13238.1 gi|55377976|ref|YP_135826.1| - 0.0028 17.9 2.2 0.0041 17.4 0.1 2.6 2 1 0 2 2 1 1 AAA domain PduV-EutP PF10662.4 gi|55377976|ref|YP_135826.1| - 0.0031 17.0 0.0 0.28 10.6 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.16 gi|55377976|ref|YP_135826.1| - 0.0031 16.7 0.9 0.24 10.6 0.6 2.3 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|55377976|ref|YP_135826.1| - 0.0043 16.6 0.2 0.031 13.8 0.1 2.0 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|55377976|ref|YP_135826.1| - 0.011 15.5 0.0 0.028 14.1 0.0 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|55377976|ref|YP_135826.1| - 0.018 15.3 0.0 0.045 14.0 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|55377976|ref|YP_135826.1| - 0.026 14.4 0.1 0.061 13.2 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|55377976|ref|YP_135826.1| - 0.029 14.2 0.0 0.066 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|55377976|ref|YP_135826.1| - 0.036 13.2 0.0 0.14 11.3 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function, DUF258 DUF1949 PF09186.6 gi|55377976|ref|YP_135826.1| - 0.068 12.7 0.4 1.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) UPF0079 PF02367.12 gi|55377976|ref|YP_135826.1| - 0.094 12.3 0.0 0.63 9.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Syntaxin PF00804.20 gi|55377976|ref|YP_135826.1| - 0.098 12.8 1.8 0.29 11.2 0.6 2.1 2 0 0 2 2 2 0 Syntaxin AAA_22 PF13401.1 gi|55377976|ref|YP_135826.1| - 0.11 12.6 0.0 0.29 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|55377976|ref|YP_135826.1| - 0.12 12.1 0.9 7.4 6.3 0.0 2.7 3 0 0 3 3 3 0 Dynamin family TBPIP PF07106.8 gi|55377976|ref|YP_135826.1| - 0.7 9.4 3.7 12 5.3 1.2 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_23 PF13476.1 gi|55377976|ref|YP_135826.1| - 2 8.7 5.2 9.8 6.4 0.0 2.7 2 1 1 3 3 3 0 AAA domain FlaC_arch PF05377.6 gi|55377976|ref|YP_135826.1| - 2.1 8.2 5.3 1.8 8.5 0.9 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) peroxidase PF00141.18 gi|55377977|ref|YP_135827.1| - 3e-92 308.2 0.0 9.6e-53 179.0 0.0 2.2 2 0 0 2 2 2 2 Peroxidase FUN14 PF04930.10 gi|55377978|ref|YP_135828.1| - 3.4e-20 72.1 4.4 4.1e-20 71.9 3.0 1.1 1 0 0 1 1 1 1 FUN14 family SBDS PF01172.13 gi|55377979|ref|YP_135829.1| - 7.6e-23 80.1 0.0 1.4e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|55377979|ref|YP_135829.1| - 7.6e-19 67.6 0.0 1.1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|55377980|ref|YP_135830.1| - 3.7e-59 199.2 0.0 4.7e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|55377980|ref|YP_135830.1| - 2.1e-14 52.4 0.1 4.6e-14 51.4 0.1 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|55377981|ref|YP_135831.1| - 1.2e-23 83.0 0.0 1.6e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family DUF2391 PF09622.5 gi|55377982|ref|YP_135832.1| - 0.0011 18.1 0.1 0.0015 17.7 0.1 1.4 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) RNase_P_p30 PF01876.11 gi|55377983|ref|YP_135833.1| - 1.3e-35 121.8 0.0 1.7e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|55377983|ref|YP_135833.1| - 0.079 12.7 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 PHP domain RNA_binding PF01877.12 gi|55377984|ref|YP_135834.1| - 8.5e-29 99.9 0.0 1.2e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 RNA binding Cu-binding_MopE PF11617.3 gi|55377984|ref|YP_135834.1| - 0.082 12.7 0.7 0.19 11.5 0.5 1.6 1 0 0 1 1 1 0 Protein metal binding site Ins145_P3_rec PF08709.6 gi|55377984|ref|YP_135834.1| - 0.098 11.6 0.0 0.21 10.6 0.0 1.3 1 1 0 1 1 1 0 Inositol 1,4,5-trisphosphate/ryanodine receptor eIF-1a PF01176.14 gi|55377985|ref|YP_135835.1| - 0.013 14.8 0.1 0.064 12.6 0.0 1.8 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 DUF1918 PF08940.6 gi|55377985|ref|YP_135835.1| - 0.017 14.4 0.1 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) DUF1541 PF07563.6 gi|55377985|ref|YP_135835.1| - 0.11 12.2 0.2 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1541) NUDIX PF00293.23 gi|55377986|ref|YP_135836.1| - 5.5e-17 61.6 0.2 8.2e-17 61.1 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4015 PF13200.1 gi|55377987|ref|YP_135837.1| - 0.00011 21.1 0.1 0.00013 20.9 0.1 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain ThiC PF01964.13 gi|55377988|ref|YP_135838.1| - 1.1e-195 650.0 0.0 1.3e-195 649.8 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|55377988|ref|YP_135838.1| - 0.08 12.1 0.3 0.16 11.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain SBP_bac_11 PF13531.1 gi|55377989|ref|YP_135839.1| - 6.5e-20 71.7 2.5 8.6e-20 71.3 1.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|55377989|ref|YP_135839.1| - 0.028 13.5 0.3 0.5 9.4 0.1 2.5 3 0 0 3 3 3 0 LysR substrate binding domain SBP_bac_1 PF01547.20 gi|55377989|ref|YP_135839.1| - 0.06 13.0 0.1 3.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|55377990|ref|YP_135840.1| - 4.6e-16 58.8 12.6 4.6e-16 58.8 8.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC2_membrane_5 PF13346.1 gi|55377990|ref|YP_135840.1| - 0.081 12.2 7.9 0.15 11.2 5.5 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4212 PF13937.1 gi|55377990|ref|YP_135840.1| - 0.8 9.7 3.5 0.63 10.0 0.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4212) DUF2232 PF09991.4 gi|55377990|ref|YP_135840.1| - 2.5 7.0 19.5 0.23 10.4 10.1 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) MobB PF03205.9 gi|55377991|ref|YP_135841.1| - 6e-22 77.8 0.1 1.1e-21 77.0 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MoaE PF02391.12 gi|55377991|ref|YP_135841.1| - 3.6e-20 71.9 0.1 5.9e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 MoaE protein GTP_EFTU PF00009.22 gi|55377991|ref|YP_135841.1| - 8.5e-05 22.0 0.4 0.00014 21.3 0.3 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|55377991|ref|YP_135841.1| - 0.00014 22.6 0.6 0.00063 20.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|55377991|ref|YP_135841.1| - 0.0023 17.8 0.0 0.004 17.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|55377991|ref|YP_135841.1| - 0.014 15.7 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PRK PF00485.13 gi|55377991|ref|YP_135841.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|55377991|ref|YP_135841.1| - 0.017 15.0 0.6 0.073 13.0 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.5 gi|55377991|ref|YP_135841.1| - 0.029 13.5 0.0 0.052 12.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ArgK PF03308.11 gi|55377991|ref|YP_135841.1| - 0.048 12.4 0.2 0.085 11.6 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|55377991|ref|YP_135841.1| - 0.051 13.4 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|55377991|ref|YP_135841.1| - 0.057 13.9 0.0 0.18 12.3 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein APS_kinase PF01583.15 gi|55377991|ref|YP_135841.1| - 0.081 12.5 0.2 4.4 6.9 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|55377991|ref|YP_135841.1| - 0.097 12.9 0.1 1.7 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|55377991|ref|YP_135841.1| - 0.13 12.4 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|55377991|ref|YP_135841.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|55377991|ref|YP_135841.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|55377991|ref|YP_135841.1| - 0.16 11.1 0.2 0.24 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|55377991|ref|YP_135841.1| - 0.16 11.9 3.0 5.4 6.9 2.1 2.8 1 1 0 1 1 1 0 AAA domain MoaC PF01967.16 gi|55377992|ref|YP_135842.1| - 1e-44 151.5 3.4 1.1e-44 151.3 2.3 1.0 1 0 0 1 1 1 1 MoaC family MoCF_biosynth PF00994.19 gi|55377993|ref|YP_135843.1| - 8e-34 116.1 0.2 1e-33 115.7 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF2946 PF11162.3 gi|55377993|ref|YP_135843.1| - 0.99 9.6 9.3 2 8.6 6.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) Zip PF02535.17 gi|55377993|ref|YP_135843.1| - 7.5 5.4 17.4 9.3 5.1 12.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter TRAM PF01938.15 gi|55377994|ref|YP_135844.1| - 6.6e-11 41.8 2.3 9.7e-11 41.2 1.6 1.3 1 0 0 1 1 1 1 TRAM domain DUF2201_N PF13203.1 gi|55377994|ref|YP_135844.1| - 0.098 11.8 0.6 0.11 11.6 0.4 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain HD PF01966.17 gi|55377996|ref|YP_135846.1| - 1.6e-09 37.8 0.8 2.5e-09 37.1 0.6 1.3 1 0 0 1 1 1 1 HD domain HTH_10 PF04967.7 gi|55377997|ref|YP_135847.1| - 5.6e-20 70.6 0.1 8.9e-20 70.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|55377997|ref|YP_135847.1| - 0.0022 17.2 0.0 0.15 11.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|55377997|ref|YP_135847.1| - 0.0038 16.8 0.3 0.17 11.5 0.0 3.4 4 0 0 4 4 4 1 MarR family Sigma70_r4 PF04545.11 gi|55377997|ref|YP_135847.1| - 0.018 14.3 0.0 0.066 12.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|55377997|ref|YP_135847.1| - 0.029 13.9 0.2 0.31 10.6 0.1 2.6 2 1 0 2 2 2 0 LexA DNA binding domain Aminotran_4 PF01063.14 gi|55377997|ref|YP_135847.1| - 0.043 13.2 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class IV Sigma70_r3 PF04539.11 gi|55377997|ref|YP_135847.1| - 0.052 13.4 0.3 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_5 PF01022.15 gi|55377997|ref|YP_135847.1| - 0.056 13.1 0.0 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55377997|ref|YP_135847.1| - 0.084 12.6 0.1 0.49 10.2 0.1 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain Cytochrom_B_N PF00033.14 gi|55377998|ref|YP_135848.1| - 0.027 13.8 1.7 0.27 10.5 1.2 2.2 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB ABC2_membrane_4 PF12730.2 gi|55377998|ref|YP_135848.1| - 1.1 8.3 7.6 8.6 5.4 0.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Rieske PF00355.21 gi|55377999|ref|YP_135849.1| - 1.3e-10 40.6 0.0 2.1e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|55377999|ref|YP_135849.1| - 0.0019 18.0 2.0 0.0029 17.4 0.3 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|55378000|ref|YP_135850.1| - 7.1e-42 143.0 0.3 7.1e-42 143.0 0.2 3.1 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|55378000|ref|YP_135850.1| - 1.2e-10 41.0 9.8 1.2e-10 41.0 6.8 2.3 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|55378000|ref|YP_135850.1| - 2.3e-06 27.7 0.2 8.8e-06 25.8 0.2 2.1 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.1 gi|55378000|ref|YP_135850.1| - 0.1 12.7 14.9 3.5 7.8 8.6 3.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) UCR_Fe-S_N PF10399.4 gi|55378000|ref|YP_135850.1| - 0.19 10.9 0.1 0.19 10.9 0.1 3.4 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ni_hydr_CYTB PF01292.15 gi|55378000|ref|YP_135850.1| - 5.3 6.3 21.1 0.016 14.5 1.3 3.2 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 Molybdopterin PF00384.17 gi|55378002|ref|YP_135852.1| - 5.5e-86 288.9 0.0 9.7e-86 288.1 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55378002|ref|YP_135852.1| - 2.3e-22 78.8 0.0 4.9e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|55378002|ref|YP_135852.1| - 0.01 15.7 3.2 0.02 14.8 2.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.11 gi|55378002|ref|YP_135852.1| - 0.015 15.0 0.3 0.03 14.1 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.13 gi|55378002|ref|YP_135852.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.1 gi|55378003|ref|YP_135853.1| - 2.7e-34 117.0 6.0 2.7e-34 117.0 4.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55378003|ref|YP_135853.1| - 9.2e-18 64.3 10.3 4.8e-08 33.2 0.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55378003|ref|YP_135853.1| - 2.3e-12 46.4 17.7 2.5e-05 23.9 4.8 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55378003|ref|YP_135853.1| - 2.9e-10 40.2 15.7 0.0055 16.9 0.2 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55378003|ref|YP_135853.1| - 1.1e-05 25.0 30.7 6.9e-05 22.5 2.1 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55378003|ref|YP_135853.1| - 0.00078 19.9 14.4 0.11 13.1 0.0 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4 PF00037.22 gi|55378003|ref|YP_135853.1| - 0.00086 18.8 29.6 0.011 15.3 1.9 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|55378003|ref|YP_135853.1| - 0.00094 19.5 34.5 0.035 14.6 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|55378003|ref|YP_135853.1| - 0.0012 18.6 27.6 0.076 12.9 0.8 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|55378003|ref|YP_135853.1| - 0.0019 18.5 19.3 0.056 13.8 0.1 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|55378003|ref|YP_135853.1| - 0.004 17.5 0.1 0.004 17.5 0.1 3.7 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|55378003|ref|YP_135853.1| - 0.01 15.8 17.5 1.4 9.0 8.5 3.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55378003|ref|YP_135853.1| - 0.015 15.1 2.2 0.015 15.1 1.5 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|55378003|ref|YP_135853.1| - 0.044 14.1 1.6 0.044 14.1 1.1 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|55378003|ref|YP_135853.1| - 0.49 11.1 19.7 8.8 7.1 0.4 4.3 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain EB_dh PF09459.5 gi|55378005|ref|YP_135855.1| - 1e-29 103.8 7.4 5.5e-28 98.1 5.1 2.4 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|55378006|ref|YP_135856.1| - 1.2e-06 28.3 6.1 2.1e-05 24.3 3.1 2.6 1 1 1 2 2 2 1 Nitrate reductase delta subunit HEAT_2 PF13646.1 gi|55378008|ref|YP_135858.1| - 2.4e-30 104.6 27.4 9.4e-13 48.2 2.3 2.9 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|55378008|ref|YP_135858.1| - 6.6e-11 41.3 12.7 0.1 12.7 0.2 5.9 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|55378008|ref|YP_135858.1| - 2.2e-06 27.9 17.9 0.0071 16.8 0.6 5.5 3 3 3 6 6 6 4 HEAT-like repeat Adaptin_N PF01602.15 gi|55378008|ref|YP_135858.1| - 0.015 13.6 0.2 0.13 10.5 0.0 2.2 1 1 2 3 3 3 0 Adaptin N terminal region Vac14_Fab1_bd PF12755.2 gi|55378008|ref|YP_135858.1| - 0.031 14.6 0.1 2.9 8.3 0.0 3.0 2 1 1 3 3 3 0 Vacuolar 14 Fab1-binding region DNA_alkylation PF08713.6 gi|55378008|ref|YP_135858.1| - 0.15 11.5 3.3 0.52 9.7 1.8 2.0 1 1 1 2 2 2 0 DNA alkylation repair enzyme ParA PF10609.4 gi|55378009|ref|YP_135859.1| - 1.8e-26 91.7 0.4 3.3e-26 90.9 0.3 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|55378009|ref|YP_135859.1| - 8.2e-23 80.8 0.0 1.4e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|55378009|ref|YP_135859.1| - 2.6e-16 58.9 1.5 5.6e-16 57.8 1.1 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|55378009|ref|YP_135859.1| - 5.4e-09 35.9 2.7 1.1e-08 34.9 1.3 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|55378009|ref|YP_135859.1| - 3.3e-07 30.3 0.0 3.6e-06 26.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|55378009|ref|YP_135859.1| - 1.9e-05 23.8 0.1 3.4e-05 23.0 0.1 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|55378009|ref|YP_135859.1| - 0.0012 18.5 0.0 0.062 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|55378009|ref|YP_135859.1| - 0.0013 18.1 0.5 0.019 14.3 0.0 2.5 3 0 0 3 3 3 1 AAA domain VirC1 PF07015.6 gi|55378009|ref|YP_135859.1| - 0.0014 17.7 0.0 0.0023 17.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|55378009|ref|YP_135859.1| - 0.0088 15.1 1.2 0.079 11.9 0.1 2.5 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|55378009|ref|YP_135859.1| - 0.11 12.2 2.2 6.2 6.6 0.1 3.5 4 0 0 4 4 4 0 Part of AAA domain UPF0126 PF03458.8 gi|55378010|ref|YP_135860.1| - 5.6e-39 131.6 24.4 3.7e-20 71.3 6.6 2.4 3 0 0 3 3 3 2 UPF0126 domain Virul_fac_BrkB PF03631.10 gi|55378011|ref|YP_135861.1| - 2.3e-38 132.0 23.8 2.8e-38 131.7 16.5 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ABC2_membrane_5 PF13346.1 gi|55378011|ref|YP_135861.1| - 0.11 11.7 12.9 0.04 13.2 5.4 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein Nitrate_red_del PF02613.10 gi|55378012|ref|YP_135862.1| - 1.8e-34 118.4 0.2 2.4e-34 118.0 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.9 gi|55378013|ref|YP_135863.1| - 1.1e-69 235.2 19.0 1.7e-69 234.6 13.2 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|55378014|ref|YP_135864.1| - 2e-26 91.7 18.6 1.4e-17 63.3 5.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55378014|ref|YP_135864.1| - 4.4e-19 68.5 25.9 2.2e-09 37.5 5.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55378014|ref|YP_135864.1| - 1.2e-15 57.4 25.0 8.7e-10 38.7 5.6 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55378014|ref|YP_135864.1| - 1.9e-13 49.3 41.3 1.3e-08 34.1 3.0 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|55378014|ref|YP_135864.1| - 5.3e-13 48.0 35.1 8.8e-07 28.4 2.2 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|55378014|ref|YP_135864.1| - 7.4e-13 47.7 40.3 1.1e-07 31.4 3.3 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|55378014|ref|YP_135864.1| - 2.2e-12 46.5 31.1 4.4e-08 32.8 6.3 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|55378014|ref|YP_135864.1| - 1.8e-10 40.6 22.6 4.3e-05 23.4 4.8 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|55378014|ref|YP_135864.1| - 2.2e-07 30.9 43.8 0.019 15.4 3.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|55378014|ref|YP_135864.1| - 2.3e-06 27.8 22.7 0.019 15.2 5.4 3.9 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|55378014|ref|YP_135864.1| - 4.1e-06 26.6 38.0 0.00014 21.8 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|55378014|ref|YP_135864.1| - 8.1e-06 25.5 30.5 0.00091 19.0 1.1 4.0 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|55378014|ref|YP_135864.1| - 0.00011 22.7 7.5 0.0025 18.3 0.3 4.0 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|55378014|ref|YP_135864.1| - 0.0014 19.0 19.7 0.25 11.7 1.3 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55378014|ref|YP_135864.1| - 0.0048 17.6 29.4 0.032 14.9 1.7 4.3 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|55378014|ref|YP_135864.1| - 0.045 14.1 1.4 0.045 14.1 1.0 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|55378014|ref|YP_135864.1| - 1.8 8.2 24.8 0.6 9.7 3.0 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.17 gi|55378015|ref|YP_135865.1| - 1.9e-55 188.3 0.0 4e-55 187.2 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55378015|ref|YP_135865.1| - 5e-24 84.2 0.1 1.1e-23 83.0 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|55378015|ref|YP_135865.1| - 1.9e-12 46.8 1.1 4.4e-12 45.6 0.8 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|55378015|ref|YP_135865.1| - 0.00072 19.3 0.9 0.00072 19.3 0.6 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4350 PF14258.1 gi|55378015|ref|YP_135865.1| - 0.088 13.0 0.0 0.27 11.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) HTH_10 PF04967.7 gi|55378017|ref|YP_135867.1| - 2.4e-18 65.4 0.2 4e-18 64.7 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378017|ref|YP_135867.1| - 0.0005 19.6 0.1 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|55378017|ref|YP_135867.1| - 0.0077 15.5 0.0 0.019 14.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.1 gi|55378017|ref|YP_135867.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_1 PF00126.22 gi|55378017|ref|YP_135867.1| - 0.015 14.9 0.1 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.17 gi|55378017|ref|YP_135867.1| - 0.084 12.7 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_11 PF08279.7 gi|55378017|ref|YP_135867.1| - 0.11 12.1 0.1 0.24 11.0 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|55378017|ref|YP_135867.1| - 0.12 12.0 0.1 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family BatA PF07584.6 gi|55378018|ref|YP_135868.1| - 7.4e-16 58.1 7.2 1.6e-15 57.0 5.0 1.6 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|55378018|ref|YP_135868.1| - 4.4e-07 30.1 2.3 4.4e-07 30.1 1.6 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF58 PF01882.13 gi|55378018|ref|YP_135868.1| - 0.011 15.8 0.1 0.04 14.0 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|55378019|ref|YP_135869.1| - 5.6e-28 98.1 12.4 3.6e-26 92.3 0.8 3.8 3 1 1 4 4 4 2 von Willebrand factor type A domain VWA PF00092.23 gi|55378019|ref|YP_135869.1| - 1.4e-17 63.9 1.6 3.9e-15 56.0 0.1 2.9 2 1 1 3 3 3 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|55378019|ref|YP_135869.1| - 2.6e-12 46.6 0.2 7.5e-12 45.1 0.1 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|55378019|ref|YP_135869.1| - 3.7e-09 36.0 0.5 5.4e-07 28.9 0.0 2.9 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|55378019|ref|YP_135869.1| - 8.2e-09 35.0 0.1 1e-07 31.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1355) DUF2201 PF09967.4 gi|55378019|ref|YP_135869.1| - 0.0018 18.2 0.1 0.0053 16.7 0.1 1.8 1 0 0 1 1 1 1 VWA-like domain (DUF2201) Filamin PF00630.14 gi|55378019|ref|YP_135869.1| - 0.086 13.4 0.1 8.2 7.0 0.0 2.7 2 0 0 2 2 2 0 Filamin/ABP280 repeat BatA PF07584.6 gi|55378019|ref|YP_135869.1| - 0.32 11.2 4.5 0.14 12.3 0.6 2.1 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal IncA PF04156.9 gi|55378020|ref|YP_135870.1| - 4.6e-13 49.1 51.3 6.2e-08 32.4 13.2 2.1 1 1 1 2 2 2 2 IncA protein TPR_MLP1_2 PF07926.7 gi|55378020|ref|YP_135870.1| - 9.6e-10 38.3 37.2 1.3e-07 31.4 16.4 2.8 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Atg14 PF10186.4 gi|55378020|ref|YP_135870.1| - 2.4e-09 36.5 26.8 8.4e-06 24.9 4.9 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|55378020|ref|YP_135870.1| - 4.7e-09 35.7 45.6 1.4e-06 27.5 17.7 2.1 1 1 2 3 3 3 2 Autophagy protein Apg6 ATG16 PF08614.6 gi|55378020|ref|YP_135870.1| - 6.7e-09 35.8 43.1 3.7e-05 23.6 19.3 2.8 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Myosin_tail_1 PF01576.14 gi|55378020|ref|YP_135870.1| - 1.9e-08 32.5 38.3 3e-08 31.8 26.5 1.3 1 0 0 1 1 1 1 Myosin tail bZIP_1 PF00170.16 gi|55378020|ref|YP_135870.1| - 3.2e-08 33.3 26.4 0.00056 19.8 0.4 5.3 1 1 3 5 5 5 3 bZIP transcription factor BLOC1_2 PF10046.4 gi|55378020|ref|YP_135870.1| - 3.9e-08 33.3 28.8 0.0038 17.3 5.2 3.6 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|55378020|ref|YP_135870.1| - 4.7e-08 32.6 23.4 0.0026 17.1 0.4 3.8 1 1 3 4 4 4 3 PspA/IM30 family DivIC PF04977.10 gi|55378020|ref|YP_135870.1| - 4.9e-08 32.3 42.6 0.00093 18.6 2.9 5.3 1 1 4 5 5 5 3 Septum formation initiator CENP-F_leu_zip PF10473.4 gi|55378020|ref|YP_135870.1| - 6e-08 32.6 39.3 7.4e-05 22.6 10.0 3.0 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_DNA_bd PF12329.3 gi|55378020|ref|YP_135870.1| - 8.4e-08 31.9 40.7 3.8e-06 26.5 6.5 4.0 1 1 3 4 4 4 3 TATA element modulatory factor 1 DNA binding DUF904 PF06005.7 gi|55378020|ref|YP_135870.1| - 1.1e-07 32.0 40.0 0.00013 22.1 3.6 4.1 1 1 2 3 3 2 2 Protein of unknown function (DUF904) AAA_13 PF13166.1 gi|55378020|ref|YP_135870.1| - 1.5e-07 30.2 24.2 2.4e-07 29.6 16.8 1.3 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|55378020|ref|YP_135870.1| - 2.1e-07 29.9 32.4 0.00011 20.9 8.6 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein ERM PF00769.14 gi|55378020|ref|YP_135870.1| - 2.2e-07 30.6 17.2 2.2e-07 30.6 11.9 2.1 1 1 1 2 2 2 1 Ezrin/radixin/moesin family ADIP PF11559.3 gi|55378020|ref|YP_135870.1| - 2.6e-07 30.6 35.6 5e-06 26.4 6.1 2.7 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding EzrA PF06160.7 gi|55378020|ref|YP_135870.1| - 2.9e-07 29.0 24.1 3.7e-07 28.7 16.7 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA bZIP_2 PF07716.10 gi|55378020|ref|YP_135870.1| - 7.1e-07 28.9 32.4 0.09 12.6 0.7 6.3 2 1 4 6 6 5 5 Basic region leucine zipper DUF1664 PF07889.7 gi|55378020|ref|YP_135870.1| - 8.5e-07 28.8 20.3 3.8e-05 23.4 5.3 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF4201 PF13870.1 gi|55378020|ref|YP_135870.1| - 9e-07 28.4 22.9 3.6e-05 23.2 7.6 3.2 1 1 2 3 3 3 3 Domain of unknown function (DUF4201) DUF4200 PF13863.1 gi|55378020|ref|YP_135870.1| - 9.7e-07 28.7 30.1 2.9e-05 24.0 9.6 3.3 1 1 1 3 3 3 2 Domain of unknown function (DUF4200) Tropomyosin_1 PF12718.2 gi|55378020|ref|YP_135870.1| - 1.2e-06 28.4 45.9 0.0036 17.1 17.5 2.8 1 1 1 2 2 2 2 Tropomyosin like Reo_sigmaC PF04582.7 gi|55378020|ref|YP_135870.1| - 1.2e-06 27.9 18.4 1.9e-05 24.0 5.9 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein FlaC_arch PF05377.6 gi|55378020|ref|YP_135870.1| - 1.2e-06 28.2 31.7 0.0014 18.4 1.1 5.2 3 1 2 5 5 5 2 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|55378020|ref|YP_135870.1| - 1.3e-06 27.7 58.3 0.0005 19.3 8.5 2.4 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding Tropomyosin PF00261.15 gi|55378020|ref|YP_135870.1| - 2e-06 27.0 34.9 3e-06 26.5 24.2 1.3 1 0 0 1 1 1 1 Tropomyosin WXG100 PF06013.7 gi|55378020|ref|YP_135870.1| - 2.4e-06 27.4 21.9 0.061 13.3 0.1 5.0 2 2 2 5 5 5 1 Proteins of 100 residues with WXG Filament PF00038.16 gi|55378020|ref|YP_135870.1| - 3.2e-06 26.8 33.2 0.00015 21.3 8.2 2.3 1 1 1 2 2 2 2 Intermediate filament protein Laminin_I PF06008.9 gi|55378020|ref|YP_135870.1| - 5.5e-06 25.8 31.0 0.001 18.4 11.3 2.9 1 1 1 3 3 3 2 Laminin Domain I Laminin_II PF06009.7 gi|55378020|ref|YP_135870.1| - 5.5e-06 26.1 24.3 0.0094 15.7 6.8 2.8 1 1 1 2 2 2 2 Laminin Domain II DUF972 PF06156.8 gi|55378020|ref|YP_135870.1| - 5.6e-06 26.6 28.4 0.0038 17.5 3.3 3.9 1 1 2 3 3 3 1 Protein of unknown function (DUF972) DUF2205 PF10224.4 gi|55378020|ref|YP_135870.1| - 6.8e-06 25.5 6.9 6.8e-06 25.5 4.8 3.6 1 1 2 3 3 3 1 Predicted coiled-coil protein (DUF2205) Striatin PF08232.7 gi|55378020|ref|YP_135870.1| - 7.4e-06 26.3 22.4 0.00035 20.9 1.6 3.0 1 1 2 3 3 3 1 Striatin family Prefoldin_2 PF01920.15 gi|55378020|ref|YP_135870.1| - 1e-05 25.2 34.2 0.0032 17.2 8.2 4.4 1 1 2 3 3 3 1 Prefoldin subunit TMF_TATA_bd PF12325.3 gi|55378020|ref|YP_135870.1| - 1.2e-05 24.9 37.9 0.0034 17.0 5.8 3.8 1 1 3 4 4 4 2 TATA element modulatory factor 1 TATA binding COG2 PF06148.6 gi|55378020|ref|YP_135870.1| - 1.9e-05 24.5 23.7 0.016 15.0 6.7 3.5 1 1 3 4 4 4 3 COG (conserved oligomeric Golgi) complex component, COG2 TBPIP PF07106.8 gi|55378020|ref|YP_135870.1| - 3.8e-05 23.2 32.9 0.0077 15.7 8.7 3.1 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin PF02996.12 gi|55378020|ref|YP_135870.1| - 4.1e-05 23.2 31.1 0.024 14.2 1.0 5.0 1 1 5 6 6 6 3 Prefoldin subunit Ax_dynein_light PF10211.4 gi|55378020|ref|YP_135870.1| - 6.3e-05 22.8 31.8 0.042 13.7 1.5 4.0 1 1 2 3 3 3 2 Axonemal dynein light chain Mod_r PF07200.8 gi|55378020|ref|YP_135870.1| - 6.6e-05 22.8 28.7 0.043 13.7 3.8 3.3 1 1 2 3 3 3 3 Modifier of rudimentary (Mod(r)) protein CCDC144C PF14915.1 gi|55378020|ref|YP_135870.1| - 6.6e-05 21.9 25.1 6.6e-05 21.9 17.4 2.2 1 1 1 2 2 2 1 CCDC144C protein coiled-coil region Fib_alpha PF08702.5 gi|55378020|ref|YP_135870.1| - 7.2e-05 22.9 23.1 0.00065 19.8 6.1 2.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family HrpB7 PF09486.5 gi|55378020|ref|YP_135870.1| - 8.2e-05 22.5 21.3 0.023 14.6 6.9 2.7 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) CCDC155 PF14662.1 gi|55378020|ref|YP_135870.1| - 0.00016 21.3 37.5 0.00029 20.4 26.0 1.5 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 DUF869 PF05911.6 gi|55378020|ref|YP_135870.1| - 0.00019 19.8 29.9 0.11 10.6 8.9 1.9 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF641 PF04859.7 gi|55378020|ref|YP_135870.1| - 0.00023 20.9 20.5 0.077 12.7 3.9 3.1 1 1 2 3 3 3 2 Plant protein of unknown function (DUF641) WEMBL PF05701.6 gi|55378020|ref|YP_135870.1| - 0.00023 19.7 27.4 0.00032 19.3 19.0 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light MscS_porin PF12795.2 gi|55378020|ref|YP_135870.1| - 0.00025 20.4 42.0 0.0056 16.0 10.2 2.1 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain DUF812 PF05667.6 gi|55378020|ref|YP_135870.1| - 0.00025 19.6 32.8 0.028 12.9 5.4 2.7 1 1 2 3 3 3 3 Protein of unknown function (DUF812) NPV_P10 PF05531.7 gi|55378020|ref|YP_135870.1| - 0.00031 20.9 31.7 0.31 11.2 2.4 4.3 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein HALZ PF02183.13 gi|55378020|ref|YP_135870.1| - 0.00036 20.1 25.7 0.34 10.6 1.0 4.7 2 1 2 4 4 4 1 Homeobox associated leucine zipper Macoilin PF09726.4 gi|55378020|ref|YP_135870.1| - 0.00038 18.8 30.2 0.003 15.9 20.9 1.9 1 1 0 1 1 1 1 Transmembrane protein DivIVA PF05103.8 gi|55378020|ref|YP_135870.1| - 0.00054 20.0 29.9 0.035 14.1 10.0 3.1 1 1 2 3 3 3 2 DivIVA protein Tektin PF03148.9 gi|55378020|ref|YP_135870.1| - 0.00062 18.4 33.6 0.0016 17.0 17.2 2.3 1 1 1 2 2 2 2 Tektin family HR1 PF02185.11 gi|55378020|ref|YP_135870.1| - 0.00064 19.4 26.7 0.17 11.6 1.0 4.5 1 1 3 4 4 4 2 Hr1 repeat DUF2353 PF09789.4 gi|55378020|ref|YP_135870.1| - 0.00077 18.8 13.0 0.00077 18.8 9.0 2.4 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) APG17 PF04108.7 gi|55378020|ref|YP_135870.1| - 0.00086 18.2 24.9 0.00086 18.2 15.4 1.8 1 1 0 1 1 1 1 Autophagy protein Apg17 Mnd1 PF03962.10 gi|55378020|ref|YP_135870.1| - 0.00087 18.9 30.4 0.012 15.3 10.5 2.9 1 1 1 2 2 2 1 Mnd1 family CENP-Q PF13094.1 gi|55378020|ref|YP_135870.1| - 0.00097 19.1 39.3 0.0043 17.0 5.4 3.3 1 1 2 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit Cast PF10174.4 gi|55378020|ref|YP_135870.1| - 0.001 17.2 38.0 0.02 12.9 10.3 2.1 1 1 1 2 2 2 2 RIM-binding protein of the cytomatrix active zone DUF4140 PF13600.1 gi|55378020|ref|YP_135870.1| - 0.0012 19.2 32.8 3.2 8.2 8.1 4.8 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF3552 PF12072.3 gi|55378020|ref|YP_135870.1| - 0.0012 18.0 17.8 0.0012 18.0 12.4 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) DUF3584 PF12128.3 gi|55378020|ref|YP_135870.1| - 0.0015 15.9 36.5 0.0038 14.6 25.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) DUF2730 PF10805.3 gi|55378020|ref|YP_135870.1| - 0.0019 17.9 19.1 0.25 11.0 3.5 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) DUF948 PF06103.6 gi|55378020|ref|YP_135870.1| - 0.0021 17.8 21.5 0.69 9.8 3.7 3.5 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF948) Sipho_Gp157 PF05565.6 gi|55378020|ref|YP_135870.1| - 0.0023 17.5 23.7 0.12 11.9 6.1 2.1 1 1 1 2 2 2 2 Siphovirus Gp157 zf-C4H2 PF10146.4 gi|55378020|ref|YP_135870.1| - 0.0024 17.9 26.3 0.049 13.6 7.0 2.0 1 1 1 2 2 2 2 Zinc finger-containing protein Syntaxin-6_N PF09177.6 gi|55378020|ref|YP_135870.1| - 0.0031 17.8 32.7 0.13 12.6 5.0 4.0 1 1 2 3 3 3 2 Syntaxin 6, N-terminal DUF3450 PF11932.3 gi|55378020|ref|YP_135870.1| - 0.0032 16.7 31.7 0.0037 16.5 6.3 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) Lebercilin PF15619.1 gi|55378020|ref|YP_135870.1| - 0.0034 16.8 33.8 0.44 9.9 18.1 2.6 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease RTBV_P46 PF06216.6 gi|55378020|ref|YP_135870.1| - 0.005 15.7 14.8 0.0073 15.2 1.1 3.1 1 1 2 3 3 3 1 Rice tungro bacilliform virus P46 protein Hemerythrin PF01814.18 gi|55378020|ref|YP_135870.1| - 0.0051 16.9 15.8 12 6.0 11.8 3.5 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF342 PF03961.8 gi|55378020|ref|YP_135870.1| - 0.0052 15.2 21.8 0.084 11.2 4.1 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF342) Spc24 PF08286.6 gi|55378020|ref|YP_135870.1| - 0.0053 16.4 42.7 0.13 12.0 4.4 4.1 1 1 3 4 4 4 2 Spc24 subunit of Ndc80 PilJ PF13675.1 gi|55378020|ref|YP_135870.1| - 0.0057 16.9 23.8 0.41 10.9 7.0 2.9 1 1 1 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term Seryl_tRNA_N PF02403.17 gi|55378020|ref|YP_135870.1| - 0.0059 16.6 25.8 0.16 11.9 9.1 3.6 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain SlyX PF04102.7 gi|55378020|ref|YP_135870.1| - 0.0062 16.8 9.8 0.0062 16.8 6.8 4.1 1 1 3 4 4 4 1 SlyX RmuC PF02646.11 gi|55378020|ref|YP_135870.1| - 0.0068 15.2 16.5 0.47 9.2 0.2 3.0 1 1 2 3 3 3 2 RmuC family FlxA PF14282.1 gi|55378020|ref|YP_135870.1| - 0.0077 16.1 35.6 0.16 11.9 4.0 3.3 1 1 2 3 3 3 1 FlxA-like protein FliD_C PF07195.7 gi|55378020|ref|YP_135870.1| - 0.0081 15.4 22.6 0.16 11.2 3.7 3.4 1 1 2 3 3 3 3 Flagellar hook-associated protein 2 C-terminus DUF4618 PF15397.1 gi|55378020|ref|YP_135870.1| - 0.0089 15.3 29.2 0.089 12.1 4.0 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4618) DUF2130 PF09903.4 gi|55378020|ref|YP_135870.1| - 0.009 14.7 14.5 0.28 9.8 2.4 3.1 1 1 3 4 4 4 1 Uncharacterized protein conserved in bacteria (DUF2130) SYCE1 PF15233.1 gi|55378020|ref|YP_135870.1| - 0.011 15.7 11.0 0.011 15.7 7.7 2.4 1 1 1 2 2 1 0 Synaptonemal complex central element protein 1 IFT57 PF10498.4 gi|55378020|ref|YP_135870.1| - 0.011 14.5 25.1 0.0036 16.1 15.2 1.7 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 MCPsignal PF00015.16 gi|55378020|ref|YP_135870.1| - 0.011 15.2 14.1 0.029 13.8 8.1 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain MAD PF05557.8 gi|55378020|ref|YP_135870.1| - 0.012 13.7 34.8 0.0047 15.0 16.6 1.8 1 1 0 1 1 1 0 Mitotic checkpoint protein AATF-Che1 PF13339.1 gi|55378020|ref|YP_135870.1| - 0.017 15.2 23.1 1.1 9.4 2.9 2.6 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor NYD-SP28_assoc PF14775.1 gi|55378020|ref|YP_135870.1| - 0.02 14.5 20.0 0.38 10.4 1.3 4.6 2 1 2 4 4 4 0 Sperm tail C-terminal domain DUF4600 PF15372.1 gi|55378020|ref|YP_135870.1| - 0.021 15.0 8.9 0.021 15.0 6.2 3.8 1 1 3 4 4 4 0 Domain of unknown function (DUF4600) DUF2968 PF11180.3 gi|55378020|ref|YP_135870.1| - 0.022 14.1 32.4 0.86 8.9 4.8 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF2968) Uds1 PF15456.1 gi|55378020|ref|YP_135870.1| - 0.023 14.7 28.3 0.44 10.5 7.2 3.5 1 1 2 3 3 3 0 Up-regulated During Septation AAA_27 PF13514.1 gi|55378020|ref|YP_135870.1| - 0.025 12.2 30.2 0.085 10.5 14.0 1.6 1 1 0 1 1 1 0 AAA domain Vps5 PF09325.5 gi|55378020|ref|YP_135870.1| - 0.025 13.8 21.2 0.37 9.9 1.1 3.6 1 1 3 4 4 4 0 Vps5 C terminal like KxDL PF10241.4 gi|55378020|ref|YP_135870.1| - 0.027 14.3 12.8 0.29 11.0 0.2 3.6 1 1 1 2 2 2 0 Uncharacterized conserved protein Rab5-bind PF09311.6 gi|55378020|ref|YP_135870.1| - 0.034 14.0 41.3 0.97 9.2 22.0 2.7 1 1 1 2 2 2 0 Rabaptin-like protein V_ATPase_I PF01496.14 gi|55378020|ref|YP_135870.1| - 0.036 11.9 27.8 0.099 10.4 6.0 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Spectrin PF00435.16 gi|55378020|ref|YP_135870.1| - 0.038 14.2 28.2 0.085 13.1 10.3 3.3 1 1 2 3 3 3 0 Spectrin repeat Cep57_MT_bd PF06657.8 gi|55378020|ref|YP_135870.1| - 0.04 13.8 1.0 0.04 13.8 0.7 4.4 1 1 2 3 3 2 0 Centrosome microtubule-binding domain of Cep57 Syntaxin PF00804.20 gi|55378020|ref|YP_135870.1| - 0.041 14.0 31.1 0.029 14.5 9.3 2.5 1 1 1 2 2 2 0 Syntaxin COG5 PF10392.4 gi|55378020|ref|YP_135870.1| - 0.042 13.8 14.9 0.36 10.7 3.6 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Prominin PF05478.6 gi|55378020|ref|YP_135870.1| - 0.052 11.0 21.7 0.021 12.4 11.6 2.0 1 1 1 2 2 2 0 Prominin FH2 PF02181.18 gi|55378020|ref|YP_135870.1| - 0.056 12.3 17.6 0.16 10.8 3.6 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF724 PF05266.9 gi|55378020|ref|YP_135870.1| - 0.066 12.8 22.1 0.12 11.9 3.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Vac_Fusion PF02346.11 gi|55378020|ref|YP_135870.1| - 0.068 12.5 7.0 0.77 9.2 0.1 3.4 2 1 2 4 4 4 0 Chordopoxvirus fusion protein Cortex-I_coil PF09304.5 gi|55378020|ref|YP_135870.1| - 0.07 13.1 36.4 1 9.4 4.2 3.5 1 1 2 3 3 3 0 Cortexillin I, coiled coil Lectin_N PF03954.9 gi|55378020|ref|YP_135870.1| - 0.074 12.4 22.0 1 8.7 5.6 2.8 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Kinetocho_Slk19 PF12709.2 gi|55378020|ref|YP_135870.1| - 0.077 13.0 32.7 1.2 9.2 1.0 5.3 1 1 3 4 4 3 0 Central kinetochore-associated OrfB_IS605 PF01385.14 gi|55378020|ref|YP_135870.1| - 0.083 12.2 0.1 0.15 11.4 0.1 1.5 1 0 0 1 1 1 0 Probable transposase ALIX_LYPXL_bnd PF13949.1 gi|55378020|ref|YP_135870.1| - 0.092 11.6 36.1 0.2 10.5 13.0 2.4 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Phage_GP20 PF06810.6 gi|55378020|ref|YP_135870.1| - 0.098 12.0 40.0 15 4.9 9.2 3.7 1 1 2 3 3 3 0 Phage minor structural protein GP20 Fmp27_WPPW PF10359.4 gi|55378020|ref|YP_135870.1| - 0.1 10.9 28.5 0.02 13.3 5.7 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Snapin_Pallidin PF14712.1 gi|55378020|ref|YP_135870.1| - 0.11 12.8 29.5 0.12 12.7 5.3 4.3 1 1 3 4 4 4 0 Snapin/Pallidin DUF2935 PF11155.3 gi|55378020|ref|YP_135870.1| - 0.13 12.3 11.1 1.1 9.3 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) THOC7 PF05615.8 gi|55378020|ref|YP_135870.1| - 0.15 12.2 27.9 1.9 8.7 10.2 2.6 1 1 1 2 2 2 0 Tho complex subunit 7 Rootletin PF15035.1 gi|55378020|ref|YP_135870.1| - 0.17 11.8 41.3 0.24 11.3 7.3 2.8 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion HSBP1 PF06825.7 gi|55378020|ref|YP_135870.1| - 0.18 11.3 25.1 2.5 7.7 0.4 5.3 2 1 2 4 4 3 0 Heat shock factor binding protein 1 Med4 PF10018.4 gi|55378020|ref|YP_135870.1| - 0.19 11.1 34.4 1.6 8.1 8.1 3.2 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 BicD PF09730.4 gi|55378020|ref|YP_135870.1| - 0.2 9.9 33.5 0.8 7.9 23.2 1.7 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Sec2p PF06428.6 gi|55378020|ref|YP_135870.1| - 0.2 11.5 30.6 0.45 10.4 4.7 3.8 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p GrpE PF01025.14 gi|55378020|ref|YP_135870.1| - 0.2 11.2 32.9 0.074 12.5 2.1 3.8 1 1 3 4 4 4 0 GrpE DUF4337 PF14235.1 gi|55378020|ref|YP_135870.1| - 0.22 11.3 20.6 0.2 11.4 1.9 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4337) Bacillus_HBL PF05791.6 gi|55378020|ref|YP_135870.1| - 0.22 10.8 23.5 0.37 10.1 6.5 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Shugoshin_N PF07558.6 gi|55378020|ref|YP_135870.1| - 0.27 10.9 14.1 7.3 6.3 0.7 3.9 3 1 1 4 4 4 0 Shugoshin N-terminal coiled-coil region Taxilin PF09728.4 gi|55378020|ref|YP_135870.1| - 0.28 10.2 27.4 0.033 13.2 13.0 2.3 1 1 1 2 2 2 0 Myosin-like coiled-coil protein GP41 PF00517.12 gi|55378020|ref|YP_135870.1| - 0.29 10.6 14.5 2.3 7.7 0.6 3.6 1 1 0 2 2 2 0 Retroviral envelope protein HlyD PF00529.15 gi|55378020|ref|YP_135870.1| - 0.29 10.3 26.5 0.46 9.7 9.1 2.1 1 1 1 2 2 2 0 HlyD family secretion protein CALCOCO1 PF07888.6 gi|55378020|ref|YP_135870.1| - 0.3 9.3 33.8 0.013 13.8 9.6 2.2 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Nup54 PF13874.1 gi|55378020|ref|YP_135870.1| - 0.3 10.7 22.7 0.094 12.3 2.3 3.1 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 XhlA PF10779.4 gi|55378020|ref|YP_135870.1| - 0.31 11.0 34.1 0.086 12.7 1.5 4.2 1 1 3 4 4 4 0 Haemolysin XhlA PEARLI-4 PF05278.7 gi|55378020|ref|YP_135870.1| - 0.33 10.3 14.2 0.24 10.7 1.5 3.0 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) ApoO PF09769.4 gi|55378020|ref|YP_135870.1| - 0.33 10.6 6.7 11 5.6 3.8 2.8 1 1 1 2 2 2 0 Apolipoprotein O Fez1 PF06818.10 gi|55378020|ref|YP_135870.1| - 0.33 10.9 30.0 2.8 7.9 6.2 2.3 1 1 1 2 2 2 0 Fez1 DUF4446 PF14584.1 gi|55378020|ref|YP_135870.1| - 0.35 10.6 21.9 2.3 8.0 1.8 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) End3 PF12761.2 gi|55378020|ref|YP_135870.1| - 0.38 10.3 30.5 0.15 11.6 3.6 3.5 1 1 2 3 3 3 0 Actin cytoskeleton-regulatory complex protein END3 YlqD PF11068.3 gi|55378020|ref|YP_135870.1| - 0.38 10.7 26.7 1.1 9.2 2.8 3.7 1 1 1 2 2 1 0 YlqD protein MbeD_MobD PF04899.7 gi|55378020|ref|YP_135870.1| - 0.39 10.6 18.6 2.9 7.8 1.4 4.0 1 1 3 4 4 4 0 MbeD/MobD like DUF1202 PF06717.6 gi|55378020|ref|YP_135870.1| - 0.4 9.9 11.2 0.041 13.1 1.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1202) V-SNARE_C PF12352.3 gi|55378020|ref|YP_135870.1| - 0.44 10.6 18.9 0.56 10.3 2.0 4.2 1 1 4 5 5 3 0 Snare region anchored in the vesicle membrane C-terminus Val_tRNA-synt_C PF10458.4 gi|55378020|ref|YP_135870.1| - 0.44 10.6 0.2 0.44 10.6 0.1 5.0 3 2 3 6 6 5 0 Valyl tRNA synthetase tRNA binding arm Filo_VP35 PF02097.10 gi|55378020|ref|YP_135870.1| - 0.44 9.6 8.6 0.67 9.0 0.5 2.2 1 1 0 2 2 2 0 Filoviridae VP35 COG6 PF06419.6 gi|55378020|ref|YP_135870.1| - 0.46 8.5 21.4 0.18 9.8 2.0 2.8 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF745 PF05335.8 gi|55378020|ref|YP_135870.1| - 0.52 9.8 18.3 0.2 11.1 7.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF745) FliD_N PF02465.13 gi|55378020|ref|YP_135870.1| - 0.55 10.6 14.2 82 3.6 5.0 3.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus SseC PF04888.7 gi|55378020|ref|YP_135870.1| - 0.59 9.4 13.8 0.18 11.1 0.6 2.5 1 1 0 2 2 2 0 Secretion system effector C (SseC) like family HOOK PF05622.7 gi|55378020|ref|YP_135870.1| - 0.67 7.6 37.2 0.87 7.3 4.1 2.0 1 1 1 2 2 2 0 HOOK protein STAT_alpha PF01017.15 gi|55378020|ref|YP_135870.1| - 0.78 9.4 24.5 0.26 11.0 1.8 3.0 1 1 2 3 3 3 0 STAT protein, all-alpha domain Fzo_mitofusin PF04799.8 gi|55378020|ref|YP_135870.1| - 0.8 9.0 26.0 5 6.4 3.2 3.4 1 1 2 3 3 3 0 fzo-like conserved region LPP PF04728.8 gi|55378020|ref|YP_135870.1| - 0.81 9.5 20.4 0.3 10.9 0.5 3.7 1 1 2 3 3 3 0 Lipoprotein leucine-zipper DUF4407 PF14362.1 gi|55378020|ref|YP_135870.1| - 0.83 8.5 27.2 1.1e+02 1.6 18.9 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) FemAB PF02388.11 gi|55378020|ref|YP_135870.1| - 0.84 8.2 20.0 0.43 9.2 2.2 2.5 1 1 1 2 2 2 0 FemAB family P4Ha_N PF08336.6 gi|55378020|ref|YP_135870.1| - 0.86 9.4 20.6 0.28 10.9 0.2 3.9 1 1 3 4 4 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region RasGAP_C PF03836.10 gi|55378020|ref|YP_135870.1| - 0.86 9.2 20.6 5.7 6.6 0.8 3.6 1 1 2 3 3 3 0 RasGAP C-terminus TSC22 PF01166.13 gi|55378020|ref|YP_135870.1| - 0.93 9.5 37.2 1 9.4 3.8 5.5 2 2 3 5 5 4 0 TSC-22/dip/bun family TMPIT PF07851.8 gi|55378020|ref|YP_135870.1| - 0.99 8.4 21.0 3.2 6.7 3.7 2.1 1 1 1 2 2 2 0 TMPIT-like protein OmpH PF03938.9 gi|55378020|ref|YP_135870.1| - 1 9.2 31.2 0.83 9.5 6.2 2.7 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) bZIP_Maf PF03131.12 gi|55378020|ref|YP_135870.1| - 1.1 9.6 29.7 1.3 9.3 0.3 4.5 1 1 4 5 5 5 0 bZIP Maf transcription factor DUF479 PF04336.7 gi|55378020|ref|YP_135870.1| - 1.1 9.3 7.2 18 5.5 0.0 3.7 1 1 1 2 2 2 0 Protein of unknown function, DUF479 Acyl-CoA_dh_C PF12806.2 gi|55378020|ref|YP_135870.1| - 1.2 9.0 8.8 2 8.2 0.1 3.5 1 1 2 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like DUF2400 PF09674.5 gi|55378020|ref|YP_135870.1| - 1.4 8.5 5.2 9.9 5.7 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) DUF489 PF04356.7 gi|55378020|ref|YP_135870.1| - 1.5 8.4 9.0 2.9 7.4 2.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF489) DUF1515 PF07439.6 gi|55378020|ref|YP_135870.1| - 1.6 8.5 20.2 0.13 12.0 2.8 3.0 1 1 2 3 3 2 0 Protein of unknown function (DUF1515) Gp58 PF07902.6 gi|55378020|ref|YP_135870.1| - 1.7 6.7 19.1 0.24 9.5 1.3 1.8 1 1 0 1 1 1 0 gp58-like protein Allexi_40kDa PF05549.6 gi|55378020|ref|YP_135870.1| - 1.9 7.7 19.2 0.91 8.7 2.9 2.4 1 1 2 3 3 3 0 Allexivirus 40kDa protein CorA PF01544.13 gi|55378020|ref|YP_135870.1| - 1.9 7.4 28.9 0.96 8.4 11.6 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Med10 PF09748.4 gi|55378020|ref|YP_135870.1| - 2 8.2 14.1 2.1 8.1 0.6 3.3 1 1 1 2 2 2 0 Transcription factor subunit Med10 of Mediator complex UPF0242 PF06785.6 gi|55378020|ref|YP_135870.1| - 2.1 6.9 24.8 1.5 7.3 9.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) DASH_Hsk3 PF08227.6 gi|55378020|ref|YP_135870.1| - 2.4 8.4 25.1 0.52 10.5 1.6 4.9 4 2 1 5 5 3 0 DASH complex subunit Hsk3 like HsbA PF12296.3 gi|55378020|ref|YP_135870.1| - 2.4 8.0 9.0 85 3.0 5.7 2.8 1 1 1 2 2 1 0 Hydrophobic surface binding protein A Osmo_CC PF08946.5 gi|55378020|ref|YP_135870.1| - 2.5 8.2 31.9 2.2 8.3 2.5 4.8 1 1 3 4 4 4 0 Osmosensory transporter coiled coil Jnk-SapK_ap_N PF09744.4 gi|55378020|ref|YP_135870.1| - 2.6 8.0 32.1 0.094 12.7 4.8 2.9 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 NTR2 PF15458.1 gi|55378020|ref|YP_135870.1| - 2.9 7.0 34.0 0.16 11.2 3.2 3.8 1 1 3 4 4 4 0 Nineteen complex-related protein 2 DUF4279 PF14106.1 gi|55378020|ref|YP_135870.1| - 3 7.7 12.0 9.9 6.0 1.8 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) Sec34 PF04136.10 gi|55378020|ref|YP_135870.1| - 3 7.5 20.1 0.53 9.9 2.4 2.7 1 1 1 3 3 3 0 Sec34-like family DUF2203 PF09969.4 gi|55378020|ref|YP_135870.1| - 3 8.0 14.7 7.5 6.8 1.0 3.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Phasin PF05597.6 gi|55378020|ref|YP_135870.1| - 3.2 7.5 21.0 2.8 7.7 0.2 3.9 2 1 0 2 2 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HCR PF07111.7 gi|55378020|ref|YP_135870.1| - 3.3 5.6 28.6 1.1 7.1 12.3 2.0 1 1 1 2 2 2 0 Alpha helical coiled-coil rod protein (HCR) YPEB PF14620.1 gi|55378020|ref|YP_135870.1| - 3.5 6.5 20.0 0.47 9.4 4.5 2.6 1 1 2 3 3 3 0 YpeB sporulation DUF3086 PF11285.3 gi|55378020|ref|YP_135870.1| - 3.7 6.2 22.4 0.65 8.7 0.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3086) DUF4164 PF13747.1 gi|55378020|ref|YP_135870.1| - 3.7 7.7 40.4 1.3 9.2 10.0 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) DUF4472 PF14739.1 gi|55378020|ref|YP_135870.1| - 3.7 8.0 24.6 0.14 12.5 5.5 3.0 1 1 1 2 2 1 0 Domain of unknown function (DUF4472) FUSC PF04632.7 gi|55378020|ref|YP_135870.1| - 3.8 5.8 19.2 25 3.1 13.3 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family Uso1_p115_C PF04871.8 gi|55378020|ref|YP_135870.1| - 3.9 7.4 40.3 3.3 7.6 19.5 2.9 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region Viral_P18 PF04521.8 gi|55378020|ref|YP_135870.1| - 3.9 6.9 17.6 0.52 9.7 0.5 4.1 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein Sulfatase_C PF14707.1 gi|55378020|ref|YP_135870.1| - 4 7.7 10.3 2.6 8.3 0.3 3.1 1 1 2 3 3 3 0 C-terminal region of aryl-sulfatase CENP-H PF05837.7 gi|55378020|ref|YP_135870.1| - 4.3 7.5 29.6 2.7 8.1 5.3 3.5 1 1 1 2 2 1 0 Centromere protein H (CENP-H) DUF2265 PF10023.4 gi|55378020|ref|YP_135870.1| - 4.5 6.3 7.1 3.7 6.5 1.9 1.9 1 1 1 2 2 2 0 Predicted aminopeptidase (DUF2265) CAMP_factor PF07373.6 gi|55378020|ref|YP_135870.1| - 5 6.5 17.8 79 2.6 6.9 2.9 1 1 1 2 2 2 0 CAMP factor (Cfa) Cep57_CLD PF14073.1 gi|55378020|ref|YP_135870.1| - 5.3 6.8 28.9 1.1 9.0 15.8 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 DUF3847 PF12958.2 gi|55378020|ref|YP_135870.1| - 5.5 6.8 26.0 4 7.2 0.4 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF3847) CASP_C PF08172.7 gi|55378020|ref|YP_135870.1| - 5.5 5.9 31.3 1.6 7.6 1.1 3.6 1 1 1 2 2 2 0 CASP C terminal Nnf1 PF03980.9 gi|55378020|ref|YP_135870.1| - 5.6 7.0 31.4 1.2 9.1 0.4 4.6 2 1 1 4 4 4 0 Nnf1 Med9 PF07544.8 gi|55378020|ref|YP_135870.1| - 5.9 6.7 30.6 39 4.0 3.0 4.7 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF3251 PF11622.3 gi|55378020|ref|YP_135870.1| - 6.1 6.2 8.0 1.7 8.0 0.1 3.1 1 1 1 3 3 2 0 Protein of unknown function (DUF3251) OEP PF02321.13 gi|55378020|ref|YP_135870.1| - 6.2 6.3 25.7 9.2 5.8 11.7 2.6 1 1 1 2 2 2 0 Outer membrane efflux protein Phlebovirus_NSM PF07246.6 gi|55378020|ref|YP_135870.1| - 6.5 5.8 22.3 2.5 7.1 1.4 3.3 1 1 3 4 4 4 0 Phlebovirus nonstructural protein NS-M Adeno_PIX PF03955.9 gi|55378020|ref|YP_135870.1| - 6.8 7.2 16.6 63 4.1 5.2 3.5 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Sin3_corepress PF08295.7 gi|55378020|ref|YP_135870.1| - 6.8 6.5 18.0 1.4 8.6 2.4 2.6 1 1 0 2 2 2 0 Sin3 family co-repressor Cluap1 PF10234.4 gi|55378020|ref|YP_135870.1| - 7 5.7 27.8 12 5.0 7.5 2.7 1 1 1 2 2 2 0 Clusterin-associated protein-1 EAP30 PF04157.11 gi|55378020|ref|YP_135870.1| - 7.3 5.6 23.2 0.4 9.7 1.8 3.1 1 1 0 2 2 2 0 EAP30/Vps36 family DUF2450 PF10475.4 gi|55378020|ref|YP_135870.1| - 7.5 5.3 14.6 0.77 8.6 5.0 2.1 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Microtub_assoc PF07989.6 gi|55378020|ref|YP_135870.1| - 7.6 6.4 23.7 2.4 8.0 1.8 4.6 1 1 2 3 3 3 0 Microtubule associated GLE1 PF07817.8 gi|55378020|ref|YP_135870.1| - 7.7 5.3 10.1 5.1 5.9 0.5 2.4 2 1 0 2 2 2 0 GLE1-like protein DUF2802 PF10975.3 gi|55378020|ref|YP_135870.1| - 7.7 6.3 26.0 1.9 8.3 0.3 5.6 1 1 6 7 7 7 0 Protein of unknown function (DUF2802) Sec20 PF03908.8 gi|55378020|ref|YP_135870.1| - 8.1 6.2 16.9 5.9 6.6 0.4 3.3 1 1 2 3 3 3 0 Sec20 HAUS-augmin3 PF14932.1 gi|55378020|ref|YP_135870.1| - 9.1 5.3 29.5 39 3.3 13.1 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF4559 PF15112.1 gi|55378020|ref|YP_135870.1| - 9.3 5.3 29.0 1.5 7.8 3.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) DMPK_coil PF08826.5 gi|55378020|ref|YP_135870.1| - 9.6 6.1 36.3 11 6.0 4.6 5.4 1 1 4 5 5 4 0 DMPK coiled coil domain like Occludin_ELL PF07303.8 gi|55378020|ref|YP_135870.1| - 9.9 6.9 19.0 14 6.4 0.6 3.8 1 1 2 3 3 3 0 Occludin homology domain DASH_Dam1 PF08653.5 gi|55378020|ref|YP_135870.1| - 10 6.0 21.2 3.7 7.3 0.8 4.9 1 1 2 4 4 4 0 DASH complex subunit Dam1 PEP-utilisers_N PF05524.8 gi|55378021|ref|YP_135871.1| - 6.2e-05 22.7 0.3 0.0027 17.4 0.0 2.5 2 0 0 2 2 2 2 PEP-utilising enzyme, N-terminal AAA_3 PF07726.6 gi|55378022|ref|YP_135872.1| - 4.3e-62 207.5 0.3 7.6e-62 206.7 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55378022|ref|YP_135872.1| - 1.1e-11 44.5 0.0 2.1e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|55378022|ref|YP_135872.1| - 3.8e-10 39.0 0.1 8e-10 38.0 0.1 1.5 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|55378022|ref|YP_135872.1| - 9.7e-07 29.0 0.1 2.3e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|55378022|ref|YP_135872.1| - 0.00015 20.8 0.6 0.0013 17.8 0.4 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|55378022|ref|YP_135872.1| - 0.00025 20.5 0.0 0.0013 18.2 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|55378022|ref|YP_135872.1| - 0.01 15.0 0.0 0.23 10.5 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|55378022|ref|YP_135872.1| - 0.025 14.5 0.1 0.072 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|55378023|ref|YP_135873.1| - 4.6e-22 77.9 0.3 4.3e-20 71.6 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|55378023|ref|YP_135873.1| - 3.7e-09 36.9 0.2 8.3e-09 35.7 0.1 1.5 1 1 1 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|55378023|ref|YP_135873.1| - 1.8e-06 27.2 0.1 4.5e-06 25.9 0.1 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|55378023|ref|YP_135873.1| - 0.069 13.1 0.1 1.5 8.8 0.0 2.7 2 1 0 2 2 2 0 VWA-like domain (DUF2201) PyrI PF01948.13 gi|55378024|ref|YP_135874.1| - 1.5e-37 127.4 0.3 1.9e-37 127.1 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|55378024|ref|YP_135874.1| - 2.5e-18 65.2 0.4 4e-18 64.5 0.3 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|55378025|ref|YP_135875.1| - 1.2e-41 141.6 0.0 2.2e-41 140.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|55378025|ref|YP_135875.1| - 3.4e-36 124.5 0.0 5.7e-36 123.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FG-GAP PF01839.18 gi|55378026|ref|YP_135876.1| - 3.5e-27 93.3 24.7 0.00023 20.7 0.4 7.3 7 0 0 7 7 7 7 FG-GAP repeat VCBS PF13517.1 gi|55378026|ref|YP_135876.1| - 4.7e-24 84.5 24.2 1.6e-09 38.0 1.2 5.9 2 2 4 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.3 gi|55378026|ref|YP_135876.1| - 6.7e-07 28.9 13.1 0.71 9.2 0.1 6.3 2 1 4 7 7 7 4 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.1 gi|55378026|ref|YP_135876.1| - 0.16 11.7 1.6 96 2.8 0.0 4.4 4 1 1 5 5 5 0 Ciliary BBSome complex subunit 2, middle region CbiA PF01656.18 gi|55378027|ref|YP_135877.1| - 8.1e-16 58.0 0.1 1.3e-15 57.3 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55378027|ref|YP_135877.1| - 4.7e-06 26.6 0.0 3.4e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|55378027|ref|YP_135877.1| - 0.0002 20.5 0.3 0.00038 19.5 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|55378027|ref|YP_135877.1| - 0.00028 20.3 0.1 0.0054 16.1 0.0 2.1 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|55378027|ref|YP_135877.1| - 0.0033 16.5 0.0 0.0048 16.0 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|55378027|ref|YP_135877.1| - 0.0077 15.3 0.2 0.2 10.6 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|55378027|ref|YP_135877.1| - 0.014 14.8 0.1 0.026 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain ParA PF10609.4 gi|55378027|ref|YP_135877.1| - 0.086 12.7 0.2 0.3 11.0 0.1 1.9 2 0 0 2 2 2 0 ParA/MinD ATPase like KaiC PF06745.8 gi|55378028|ref|YP_135878.1| - 6.3e-08 32.0 0.0 2e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 KaiC Trigger_N PF05697.8 gi|55378028|ref|YP_135878.1| - 0.079 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) IncA PF04156.9 gi|55378029|ref|YP_135879.1| - 0.26 10.8 3.2 0.27 10.8 2.2 1.0 1 0 0 1 1 1 0 IncA protein FKBP_C PF00254.23 gi|55378030|ref|YP_135880.1| - 5.5e-08 32.7 0.9 1.2e-07 31.6 0.4 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|55378030|ref|YP_135880.1| - 0.084 12.2 0.5 0.21 10.9 0.4 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) PALP PF00291.20 gi|55378031|ref|YP_135881.1| - 1.9e-68 230.9 2.9 2.2e-68 230.7 2.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CYTH PF01928.16 gi|55378032|ref|YP_135882.1| - 1.6e-39 135.4 4.1 1.8e-39 135.3 2.9 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|55378033|ref|YP_135883.1| - 3.6e-176 585.4 6.4 4.1e-176 585.2 4.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|55378033|ref|YP_135883.1| - 0.018 15.2 0.4 0.3 11.3 0.0 2.7 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Asp23 PF03780.8 gi|55378033|ref|YP_135883.1| - 1.3 9.2 8.4 2.2 8.6 0.9 3.4 2 1 0 2 2 2 0 Asp23 family ThiI PF02568.9 gi|55378034|ref|YP_135884.1| - 1.3e-43 148.7 0.0 2e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|55378034|ref|YP_135884.1| - 1.3e-11 44.5 0.0 2.1e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.11 gi|55378034|ref|YP_135884.1| - 0.0023 16.5 0.0 0.0035 15.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|55378034|ref|YP_135884.1| - 0.0055 16.2 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|55378034|ref|YP_135884.1| - 0.08 12.2 0.0 0.38 10.0 0.0 2.1 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC PALP PF00291.20 gi|55378036|ref|YP_135886.1| - 8.1e-58 196.0 0.0 9.9e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NikR_C PF08753.6 gi|55378037|ref|YP_135887.1| - 5.9e-18 64.5 0.5 8.4e-18 64.0 0.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|55378037|ref|YP_135887.1| - 4.5e-06 26.3 0.0 9e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family eIF-1a PF01176.14 gi|55378039|ref|YP_135889.1| - 4.5e-24 83.6 0.1 5.3e-24 83.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 UPF0058 PF01893.11 gi|55378040|ref|YP_135890.1| - 4.8e-20 71.4 1.1 5e-20 71.3 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TIG PF01833.19 gi|55378042|ref|YP_135892.1| - 0.014 15.3 1.4 0.11 12.4 0.6 2.2 1 1 1 2 2 2 0 IPT/TIG domain T2SF PF00482.18 gi|55378047|ref|YP_135897.1| - 8.2e-26 90.3 13.1 1.7e-14 53.8 0.4 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|55378048|ref|YP_135898.1| - 1e-44 152.5 0.0 2.2e-44 151.4 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|55378048|ref|YP_135898.1| - 6e-05 22.4 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.16 gi|55378049|ref|YP_135899.1| - 3.5e-67 226.9 0.0 3.9e-67 226.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|55378049|ref|YP_135899.1| - 7.8e-07 28.5 0.0 1.2e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|55378049|ref|YP_135899.1| - 7e-05 21.7 0.1 0.00036 19.3 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V AsnC_trans_reg PF01037.16 gi|55378050|ref|YP_135900.1| - 2.9e-16 58.9 0.1 5.9e-16 57.9 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|55378050|ref|YP_135900.1| - 1.2e-09 37.4 0.2 2.9e-09 36.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55378050|ref|YP_135900.1| - 2e-05 24.0 0.1 6.3e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|55378050|ref|YP_135900.1| - 4.3e-05 23.2 0.0 7.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|55378050|ref|YP_135900.1| - 0.00043 19.8 0.0 0.00067 19.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|55378050|ref|YP_135900.1| - 0.00058 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|55378050|ref|YP_135900.1| - 0.0044 16.6 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|55378050|ref|YP_135900.1| - 0.0058 16.1 0.0 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55378050|ref|YP_135900.1| - 0.0081 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|55378050|ref|YP_135900.1| - 0.011 15.8 0.1 0.018 15.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|55378050|ref|YP_135900.1| - 0.014 14.8 0.2 0.023 14.2 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|55378050|ref|YP_135900.1| - 0.015 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|55378050|ref|YP_135900.1| - 0.024 14.9 0.0 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain FliG_N PF14842.1 gi|55378050|ref|YP_135900.1| - 0.051 13.6 0.2 0.38 10.8 0.0 2.1 2 0 0 2 2 2 0 FliG N-terminal domain HTH_31 PF13560.1 gi|55378050|ref|YP_135900.1| - 0.052 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|55378050|ref|YP_135900.1| - 0.12 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Gp_dh_C PF02800.15 gi|55378050|ref|YP_135900.1| - 0.13 11.6 0.2 0.53 9.7 0.1 2.0 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Phage_rep_org_N PF09681.5 gi|55378050|ref|YP_135900.1| - 0.14 11.7 0.1 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) AhpC-TSA PF00578.16 gi|55378052|ref|YP_135902.1| - 1.9e-18 66.3 0.0 2.5e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55378052|ref|YP_135902.1| - 7.6e-14 51.4 0.0 1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|55378052|ref|YP_135902.1| - 6.2e-05 23.1 0.0 9.5e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|55378052|ref|YP_135902.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|55378052|ref|YP_135902.1| - 0.017 14.8 0.0 0.53 9.9 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin T4_deiodinase PF00837.12 gi|55378052|ref|YP_135902.1| - 0.031 13.3 0.0 0.045 12.7 0.0 1.3 1 0 0 1 1 1 0 Iodothyronine deiodinase HTH_20 PF12840.2 gi|55378054|ref|YP_135904.1| - 0.011 15.4 0.1 0.57 10.0 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Methyltransf_3 PF01596.12 gi|55378055|ref|YP_135905.1| - 7.1e-22 77.4 0.0 9.3e-22 77.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|55378055|ref|YP_135905.1| - 2.6e-12 47.5 0.1 4.1e-12 46.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55378055|ref|YP_135905.1| - 1.2e-07 31.7 0.1 2.3e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378055|ref|YP_135905.1| - 1.5e-07 31.9 0.2 2.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378055|ref|YP_135905.1| - 1.8e-07 30.8 0.0 2.6e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|55378055|ref|YP_135905.1| - 0.00013 21.5 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|55378055|ref|YP_135905.1| - 0.0002 20.8 0.0 0.00029 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|55378055|ref|YP_135905.1| - 0.00064 20.0 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55378055|ref|YP_135905.1| - 0.0023 18.4 0.0 0.0038 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378055|ref|YP_135905.1| - 0.013 15.9 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55378055|ref|YP_135905.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|55378055|ref|YP_135905.1| - 0.14 11.1 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheC PF04509.7 gi|55378056|ref|YP_135906.1| - 1.5e-14 53.4 1.5 2.6e-14 52.6 0.2 2.0 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|55378056|ref|YP_135906.1| - 0.00023 20.9 1.1 0.0005 19.8 0.1 2.0 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX AMP-binding PF00501.23 gi|55378057|ref|YP_135907.1| - 9.2e-84 281.2 0.0 1.1e-83 281.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55378057|ref|YP_135907.1| - 2.4e-17 63.6 0.0 6.5e-17 62.2 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3108 PF11306.3 gi|55378058|ref|YP_135908.1| - 0.0087 15.7 0.2 0.022 14.4 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3108) Acyl-CoA_dh_1 PF00441.19 gi|55378059|ref|YP_135909.1| - 1.2e-40 139.0 3.0 1.2e-40 139.0 2.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55378059|ref|YP_135909.1| - 2.2e-21 76.5 3.2 6.8e-21 74.9 2.2 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55378059|ref|YP_135909.1| - 7.8e-20 70.1 0.6 2.1e-19 68.7 0.4 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|55378059|ref|YP_135909.1| - 1e-15 58.1 3.8 3.2e-15 56.5 2.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Adeno_PVIII PF01310.13 gi|55378059|ref|YP_135909.1| - 0.054 13.3 0.1 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Adenovirus hexon associated protein, protein VIII Cdc6_C PF09079.6 gi|55378060|ref|YP_135910.1| - 3.4e-17 61.9 0.1 8e-17 60.7 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|55378060|ref|YP_135910.1| - 1.9e-12 47.5 0.0 3.5e-11 43.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55378060|ref|YP_135910.1| - 3e-12 46.8 0.0 2.3e-11 43.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|55378060|ref|YP_135910.1| - 2.5e-07 30.5 0.0 4.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|55378060|ref|YP_135910.1| - 1.1e-05 25.3 0.0 2.5e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|55378060|ref|YP_135910.1| - 3e-05 24.2 0.0 7.4e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PadR PF03551.9 gi|55378060|ref|YP_135910.1| - 0.00018 21.1 0.1 0.00042 20.0 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family KAP_NTPase PF07693.9 gi|55378060|ref|YP_135910.1| - 0.0042 16.1 0.0 0.038 12.9 0.0 1.9 1 1 1 2 2 2 1 KAP family P-loop domain AAA_17 PF13207.1 gi|55378060|ref|YP_135910.1| - 0.014 16.1 0.1 0.049 14.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|55378060|ref|YP_135910.1| - 0.015 14.7 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain TrmB PF01978.14 gi|55378060|ref|YP_135910.1| - 0.036 13.7 0.1 0.11 12.2 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_23 PF13476.1 gi|55378060|ref|YP_135910.1| - 0.046 14.0 0.1 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|55378060|ref|YP_135910.1| - 0.066 12.9 0.1 0.76 9.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|55378060|ref|YP_135910.1| - 0.066 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|55378060|ref|YP_135910.1| - 0.072 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DEAD PF00270.24 gi|55378060|ref|YP_135910.1| - 0.079 12.4 0.1 1.2 8.6 0.0 2.1 1 1 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|55378060|ref|YP_135910.1| - 0.093 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|55378060|ref|YP_135910.1| - 0.095 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Lactamase_B PF00753.22 gi|55378061|ref|YP_135911.1| - 8.6e-15 54.8 4.2 1.2e-14 54.3 2.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55378061|ref|YP_135911.1| - 5e-05 22.9 0.7 0.00012 21.7 0.2 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55378061|ref|YP_135911.1| - 0.054 13.2 0.2 0.099 12.3 0.2 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PSI PF01437.20 gi|55378061|ref|YP_135911.1| - 0.092 12.9 2.9 0.17 12.0 0.2 2.1 2 0 0 2 2 2 0 Plexin repeat DICT PF10069.4 gi|55378063|ref|YP_135913.1| - 5.5e-29 100.2 0.0 1.1e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems POR_N PF01855.14 gi|55378064|ref|YP_135914.1| - 6.2e-50 169.8 0.2 1.3e-49 168.8 0.1 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|55378064|ref|YP_135914.1| - 9.8e-45 152.5 0.0 7.3e-44 149.7 0.0 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|55378064|ref|YP_135914.1| - 0.00046 19.7 0.1 0.00093 18.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|55378065|ref|YP_135915.1| - 8.7e-31 106.5 0.1 1.3e-30 105.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|55378065|ref|YP_135915.1| - 0.039 13.8 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.1 gi|55378066|ref|YP_135916.1| - 1e-14 53.6 0.1 1.6e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|55378066|ref|YP_135916.1| - 7.1e-12 44.8 0.0 1.3e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|55378066|ref|YP_135916.1| - 1.5e-09 37.1 0.2 2.7e-09 36.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|55378066|ref|YP_135916.1| - 9.1e-09 34.8 0.1 1.8e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|55378066|ref|YP_135916.1| - 1.2e-07 31.4 0.0 2.1e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55378066|ref|YP_135916.1| - 1.1e-06 28.1 0.0 1.9e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|55378066|ref|YP_135916.1| - 1.3e-06 28.2 0.4 2.4e-06 27.3 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|55378066|ref|YP_135916.1| - 1.9e-06 27.3 0.0 3.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|55378066|ref|YP_135916.1| - 5e-06 26.0 0.0 7.8e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|55378066|ref|YP_135916.1| - 6.9e-06 26.0 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|55378066|ref|YP_135916.1| - 9e-06 25.1 0.1 1.4e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|55378066|ref|YP_135916.1| - 1.7e-05 24.4 0.0 2.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|55378066|ref|YP_135916.1| - 1.8e-05 24.3 0.0 7.1e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|55378066|ref|YP_135916.1| - 3.1e-05 23.8 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|55378066|ref|YP_135916.1| - 3.4e-05 23.4 0.4 5.4e-05 22.8 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|55378066|ref|YP_135916.1| - 0.00011 22.2 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|55378066|ref|YP_135916.1| - 0.0004 20.3 0.0 0.00095 19.1 0.0 1.7 2 1 1 3 3 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|55378066|ref|YP_135916.1| - 0.00079 18.8 0.1 0.0017 17.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|55378066|ref|YP_135916.1| - 0.0011 19.0 0.1 0.0016 18.5 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4_2 PF08281.7 gi|55378066|ref|YP_135916.1| - 0.0013 18.1 0.1 0.0025 17.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_6 PF01418.12 gi|55378066|ref|YP_135916.1| - 0.0014 18.3 0.1 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family LacI PF00356.16 gi|55378066|ref|YP_135916.1| - 0.0033 17.0 0.0 0.0096 15.5 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, lacI family HTH_29 PF13551.1 gi|55378066|ref|YP_135916.1| - 0.0041 17.2 0.0 0.0058 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|55378066|ref|YP_135916.1| - 0.0047 16.4 0.0 0.0093 15.4 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|55378066|ref|YP_135916.1| - 0.0079 16.4 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain EAP30 PF04157.11 gi|55378066|ref|YP_135916.1| - 0.011 14.9 0.1 0.014 14.5 0.1 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_10 PF04967.7 gi|55378066|ref|YP_135916.1| - 0.012 15.1 0.1 0.026 14.1 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF2250 PF10007.4 gi|55378066|ref|YP_135916.1| - 0.023 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|55378066|ref|YP_135916.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix TetR_N PF00440.18 gi|55378066|ref|YP_135916.1| - 0.029 13.9 0.1 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.1 gi|55378066|ref|YP_135916.1| - 0.042 14.0 0.1 0.063 13.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|55378066|ref|YP_135916.1| - 0.045 13.4 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_1 PF00126.22 gi|55378066|ref|YP_135916.1| - 0.052 13.2 0.1 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RPA_C PF08784.6 gi|55378066|ref|YP_135916.1| - 0.058 13.8 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Tnp_Tc3_2 PF01498.13 gi|55378066|ref|YP_135916.1| - 0.059 13.4 0.1 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 Transposase DUF2913 PF11140.3 gi|55378066|ref|YP_135916.1| - 0.064 12.5 0.0 0.092 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) HTH_30 PF13556.1 gi|55378066|ref|YP_135916.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2513 PF10711.4 gi|55378066|ref|YP_135916.1| - 0.073 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Methyltransf_14 PF08484.6 gi|55378066|ref|YP_135916.1| - 0.083 12.4 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain HTH_Crp_2 PF13545.1 gi|55378066|ref|YP_135916.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55378066|ref|YP_135916.1| - 0.13 11.6 0.3 0.31 10.3 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 DHH PF01368.15 gi|55378067|ref|YP_135917.1| - 5.6e-14 51.9 0.0 1e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|55378067|ref|YP_135917.1| - 2.3e-13 49.6 0.5 5.6e-13 48.3 0.3 1.7 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|55378067|ref|YP_135917.1| - 9.1e-10 38.5 0.0 3.1e-09 36.8 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain CBS PF00571.23 gi|55378068|ref|YP_135918.1| - 2.1e-27 94.6 7.4 7.1e-14 51.3 0.1 2.8 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|55378068|ref|YP_135918.1| - 3.2e-10 39.9 0.1 8.7e-10 38.5 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|55378068|ref|YP_135918.1| - 5.1e-05 23.1 0.2 0.00058 19.7 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.6 gi|55378068|ref|YP_135918.1| - 0.0076 14.7 0.0 0.01 14.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) MM_CoA_mutase PF01642.17 gi|55378069|ref|YP_135919.1| - 9.6e-193 640.9 1.1 1.1e-192 640.7 0.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Yip1 PF04893.12 gi|55378070|ref|YP_135920.1| - 0.009 15.5 1.7 0.01 15.3 1.2 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1049 PF06305.6 gi|55378070|ref|YP_135920.1| - 0.028 13.9 1.3 0.028 13.9 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF2029 PF09594.5 gi|55378070|ref|YP_135920.1| - 0.047 13.1 0.2 0.058 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) DoxX PF07681.7 gi|55378070|ref|YP_135920.1| - 0.21 12.0 4.6 0.26 11.7 3.2 1.1 1 0 0 1 1 1 0 DoxX SPC12 PF06645.8 gi|55378070|ref|YP_135920.1| - 3.3 7.5 6.0 1.4 8.7 1.7 2.0 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF485 PF04341.7 gi|55378070|ref|YP_135920.1| - 8.9 6.1 7.0 94 2.8 4.8 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF485 COX1 PF00115.15 gi|55378072|ref|YP_135922.1| - 2.1e-159 530.9 56.5 2.1e-159 530.9 39.2 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF485 PF04341.7 gi|55378073|ref|YP_135923.1| - 0.00021 20.9 0.3 0.00025 20.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF3007 PF11460.3 gi|55378073|ref|YP_135923.1| - 0.037 14.0 0.2 0.045 13.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) NfeD PF01957.13 gi|55378073|ref|YP_135923.1| - 0.041 14.0 0.1 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4306 PF14154.1 gi|55378073|ref|YP_135923.1| - 0.07 13.1 0.6 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4306) VIT1 PF01988.14 gi|55378073|ref|YP_135923.1| - 0.28 10.6 2.5 0.33 10.4 1.7 1.0 1 0 0 1 1 1 0 VIT family ABC2_membrane_3 PF12698.2 gi|55378073|ref|YP_135923.1| - 1.2 8.0 6.7 1.4 7.9 4.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|55378073|ref|YP_135923.1| - 1.5 7.6 6.1 1.7 7.4 4.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein PsbN PF02468.10 gi|55378073|ref|YP_135923.1| - 7.7 6.2 7.0 4.4 7.0 0.5 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) Cyt_c_ox_IV PF12270.3 gi|55378074|ref|YP_135924.1| - 0.0045 16.7 1.4 0.0045 16.7 0.9 2.6 1 1 2 3 3 3 2 Cytochrome c oxidase subunit IV DUF1418 PF07214.7 gi|55378074|ref|YP_135924.1| - 3.3 7.3 5.0 1.1 8.9 1.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) DUF1469 PF07332.6 gi|55378074|ref|YP_135924.1| - 4.4 7.0 19.8 0.065 12.9 6.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) IncA PF04156.9 gi|55378075|ref|YP_135925.1| - 2.4e-06 27.2 6.3 4.3e-06 26.4 4.3 1.3 1 0 0 1 1 1 1 IncA protein CALCOCO1 PF07888.6 gi|55378075|ref|YP_135925.1| - 9.9e-06 24.1 3.0 9.9e-06 24.1 2.1 1.8 2 0 0 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like TBPIP PF07106.8 gi|55378075|ref|YP_135925.1| - 0.00015 21.3 3.1 0.00028 20.4 2.2 1.3 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF972 PF06156.8 gi|55378075|ref|YP_135925.1| - 0.00031 21.0 3.3 0.006 16.9 1.8 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF972) Reo_sigmaC PF04582.7 gi|55378075|ref|YP_135925.1| - 0.0017 17.6 0.2 0.0027 16.9 0.1 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|55378075|ref|YP_135925.1| - 0.0022 17.8 5.6 0.0022 17.8 3.8 2.1 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) MscS_porin PF12795.2 gi|55378075|ref|YP_135925.1| - 0.0043 16.3 9.9 0.0043 16.3 6.9 2.1 3 0 0 3 3 2 1 Mechanosensitive ion channel porin domain Phage_lysis PF03245.8 gi|55378075|ref|YP_135925.1| - 0.0071 16.3 4.9 0.022 14.7 3.4 1.9 1 0 0 1 1 1 1 Bacteriophage Rz lysis protein ADIP PF11559.3 gi|55378075|ref|YP_135925.1| - 0.0088 15.9 4.4 0.019 14.8 3.0 1.5 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|55378075|ref|YP_135925.1| - 0.012 15.5 7.8 0.025 14.4 5.4 1.5 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V_ATPase_I PF01496.14 gi|55378075|ref|YP_135925.1| - 0.013 13.4 2.1 0.018 12.9 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|55378075|ref|YP_135925.1| - 0.016 15.0 13.2 0.03 14.1 9.2 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3584 PF12128.3 gi|55378075|ref|YP_135925.1| - 0.019 12.3 4.2 0.031 11.6 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DivIC PF04977.10 gi|55378075|ref|YP_135925.1| - 0.03 13.7 6.5 0.079 12.4 4.5 1.7 1 0 0 1 1 1 0 Septum formation initiator Spc7 PF08317.6 gi|55378075|ref|YP_135925.1| - 0.031 12.9 2.1 0.046 12.3 1.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein AAA_13 PF13166.1 gi|55378075|ref|YP_135925.1| - 0.052 12.0 2.2 0.081 11.3 1.5 1.2 1 0 0 1 1 1 0 AAA domain DUF4164 PF13747.1 gi|55378075|ref|YP_135925.1| - 0.075 13.1 12.9 0.19 11.8 8.9 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF342 PF03961.8 gi|55378075|ref|YP_135925.1| - 0.12 10.7 0.8 0.18 10.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|55378075|ref|YP_135925.1| - 0.12 11.2 2.7 0.21 10.5 1.8 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 RasGAP_C PF03836.10 gi|55378075|ref|YP_135925.1| - 0.13 11.9 0.3 0.22 11.1 0.2 1.3 1 0 0 1 1 1 0 RasGAP C-terminus TPR_MLP1_2 PF07926.7 gi|55378075|ref|YP_135925.1| - 0.16 11.6 8.2 0.39 10.4 5.7 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Tropomyosin_1 PF12718.2 gi|55378075|ref|YP_135925.1| - 0.2 11.4 14.8 0.032 14.0 7.1 2.0 2 0 0 2 2 1 0 Tropomyosin like APG6 PF04111.7 gi|55378075|ref|YP_135925.1| - 0.22 10.5 7.4 0.39 9.7 5.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF904 PF06005.7 gi|55378075|ref|YP_135925.1| - 0.22 11.8 10.2 0.46 10.8 7.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|55378075|ref|YP_135925.1| - 0.25 11.3 3.6 0.43 10.5 2.0 1.8 1 1 0 1 1 1 0 bZIP transcription factor DUF1664 PF07889.7 gi|55378075|ref|YP_135925.1| - 0.38 10.5 2.1 0.66 9.7 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Bacillus_HBL PF05791.6 gi|55378075|ref|YP_135925.1| - 0.45 9.8 1.7 0.76 9.1 1.2 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Troponin PF00992.15 gi|55378075|ref|YP_135925.1| - 0.46 10.5 8.4 0.87 9.6 5.8 1.4 1 0 0 1 1 1 0 Troponin DUF724 PF05266.9 gi|55378075|ref|YP_135925.1| - 0.68 9.5 4.8 1.2 8.7 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Prominin PF05478.6 gi|55378075|ref|YP_135925.1| - 0.77 7.2 0.4 1.1 6.6 0.2 1.1 1 0 0 1 1 1 0 Prominin DUF883 PF05957.8 gi|55378075|ref|YP_135925.1| - 1.4 9.3 10.8 0.57 10.6 5.1 2.2 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) Spc24 PF08286.6 gi|55378075|ref|YP_135925.1| - 1.7 8.3 9.7 5.9 6.6 6.7 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 HR1 PF02185.11 gi|55378075|ref|YP_135925.1| - 2.3 8.0 8.9 3.2 7.5 3.6 2.4 1 1 1 2 2 2 0 Hr1 repeat Macoilin PF09726.4 gi|55378075|ref|YP_135925.1| - 3.4 5.8 17.3 5.7 5.0 12.0 1.3 1 0 0 1 1 1 0 Transmembrane protein Cep57_MT_bd PF06657.8 gi|55378075|ref|YP_135925.1| - 3.8 7.5 8.8 1.3 8.9 3.3 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 SlyX PF04102.7 gi|55378075|ref|YP_135925.1| - 5.4 7.4 10.6 57 4.1 7.3 2.6 1 1 0 1 1 1 0 SlyX Mnd1 PF03962.10 gi|55378075|ref|YP_135925.1| - 5.9 6.5 12.4 0.12 12.0 3.6 1.7 2 0 0 2 2 1 0 Mnd1 family FlxA PF14282.1 gi|55378075|ref|YP_135925.1| - 6.3 6.8 13.2 0.023 14.6 1.5 2.5 2 0 0 2 2 1 0 FlxA-like protein HTH_24 PF13412.1 gi|55378076|ref|YP_135926.1| - 0.00023 20.4 0.0 0.00047 19.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|55378076|ref|YP_135926.1| - 0.0039 16.8 0.0 0.0079 15.9 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|55378076|ref|YP_135926.1| - 0.017 14.7 0.1 0.036 13.7 0.0 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MotA_activ PF09114.5 gi|55378076|ref|YP_135926.1| - 0.027 14.2 0.0 0.041 13.6 0.0 1.4 1 1 0 1 1 1 0 Transcription factor MotA, activation domain Phage_rep_org_N PF09681.5 gi|55378076|ref|YP_135926.1| - 0.034 13.7 0.0 0.063 12.8 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_15 PF12324.3 gi|55378076|ref|YP_135926.1| - 0.041 13.5 0.1 0.26 10.9 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_S19e PF01090.14 gi|55378076|ref|YP_135926.1| - 0.047 13.1 0.0 0.32 10.4 0.0 1.9 1 1 0 1 1 1 0 Ribosomal protein S19e HTH_20 PF12840.2 gi|55378076|ref|YP_135926.1| - 0.063 13.0 0.2 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|55378076|ref|YP_135926.1| - 0.072 12.7 0.2 0.22 11.2 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Adenylsucc_synt PF00709.16 gi|55378077|ref|YP_135927.1| - 2.5e-144 481.0 0.0 2.9e-144 480.8 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase MetJ PF01340.15 gi|55378077|ref|YP_135927.1| - 0.031 14.0 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 Met Apo-repressor, MetJ Trm112p PF03966.11 gi|55378078|ref|YP_135928.1| - 1.1e-10 41.7 0.6 1.9e-10 40.9 0.4 1.4 1 1 0 1 1 1 1 Trm112p-like protein Peptidase_M48 PF01435.13 gi|55378080|ref|YP_135930.1| - 1.9e-07 30.8 0.0 2.3e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 CbiX PF01903.12 gi|55378082|ref|YP_135932.1| - 2.8e-41 139.8 0.1 2.2e-19 69.4 0.0 2.3 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|55378082|ref|YP_135932.1| - 8.1e-07 28.3 0.0 0.00094 18.3 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Fumerase_C PF05683.7 gi|55378082|ref|YP_135932.1| - 0.095 11.8 0.0 4.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Fumarase C-terminus tRNA-synt_1e PF01406.14 gi|55378085|ref|YP_135935.1| - 6.5e-104 347.2 0.0 1.5e-102 342.7 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|55378085|ref|YP_135935.1| - 2.7e-12 46.7 1.8 5.7e-12 45.7 0.4 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|55378085|ref|YP_135935.1| - 3e-12 45.9 0.1 9.2e-06 24.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|55378085|ref|YP_135935.1| - 1.9e-08 33.3 0.0 2.7e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|55378085|ref|YP_135935.1| - 5.2e-05 21.4 0.0 0.00021 19.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|55378085|ref|YP_135935.1| - 0.007 15.0 0.0 0.014 14.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.14 gi|55378085|ref|YP_135935.1| - 0.0089 15.5 0.2 0.026 14.0 0.1 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif tRNA-synt_1d PF00750.14 gi|55378085|ref|YP_135935.1| - 0.029 13.2 0.0 1.4 7.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (R) DUF883 PF05957.8 gi|55378085|ref|YP_135935.1| - 4.2 7.8 8.1 1.8 9.0 0.0 3.1 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF2178 PF09946.4 gi|55378087|ref|YP_135937.1| - 0.4 10.4 1.8 0.53 10.0 1.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) PetM PF08041.6 gi|55378087|ref|YP_135937.1| - 1.2 8.7 5.4 6.7 6.2 0.2 2.2 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 DUF3040 PF11239.3 gi|55378087|ref|YP_135937.1| - 8.2 6.5 6.5 10 6.2 4.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.13 gi|55378088|ref|YP_135938.1| - 4e-58 196.7 0.0 4.7e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MscS_TM PF12794.2 gi|55378088|ref|YP_135938.1| - 0.092 11.3 0.3 0.14 10.7 0.2 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF241 PF03087.9 gi|55378088|ref|YP_135938.1| - 0.12 11.8 0.1 0.39 10.1 0.0 1.8 2 0 0 2 2 2 0 Arabidopsis protein of unknown function DUF2746 PF10874.3 gi|55378088|ref|YP_135938.1| - 2.7 8.2 6.4 2.5 8.3 2.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) T2SF PF00482.18 gi|55378088|ref|YP_135938.1| - 4.2 7.3 5.5 3.8 7.4 0.0 2.6 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F TctA PF01970.11 gi|55378089|ref|YP_135939.1| - 1.8e-62 211.0 44.8 2.6e-62 210.5 31.1 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family MoeA_N PF03453.12 gi|55378090|ref|YP_135940.1| - 3.3e-44 150.0 2.9 3.3e-44 150.0 2.0 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|55378090|ref|YP_135940.1| - 2.8e-30 104.6 0.1 4.9e-30 103.8 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|55378090|ref|YP_135940.1| - 3.9e-20 71.5 1.1 2.5e-19 69.0 0.0 2.7 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PASTA PF03793.14 gi|55378090|ref|YP_135940.1| - 0.053 13.1 1.5 0.21 11.2 1.0 2.0 1 0 0 1 1 1 0 PASTA domain MoeA_N PF03453.12 gi|55378091|ref|YP_135941.1| - 1.4e-34 118.8 2.8 2.3e-34 118.0 2.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|55378091|ref|YP_135941.1| - 7.6e-28 96.7 0.0 1.4e-27 95.8 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|55378091|ref|YP_135941.1| - 1.7e-26 92.4 0.1 7.8e-26 90.2 0.1 2.1 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.10 gi|55378091|ref|YP_135941.1| - 6.6e-17 61.2 0.2 8.8e-16 57.6 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.15 gi|55378091|ref|YP_135941.1| - 0.0016 17.6 2.4 0.051 12.6 0.3 2.5 2 0 0 2 2 2 2 LysR substrate binding domain PBP_like_2 PF12849.2 gi|55378091|ref|YP_135941.1| - 0.0078 15.7 0.0 0.93 8.8 0.0 2.4 1 1 1 2 2 2 1 PBP superfamily domain Fe-ADH PF00465.14 gi|55378092|ref|YP_135942.1| - 1.7e-62 211.2 2.5 1.9e-62 211.0 1.7 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|55378092|ref|YP_135942.1| - 6.9e-11 41.9 0.1 1.6e-09 37.4 0.0 2.1 1 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Pyr_redox_2 PF07992.9 gi|55378093|ref|YP_135943.1| - 2.4e-16 60.2 0.0 4.3e-16 59.4 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55378093|ref|YP_135943.1| - 1.9e-08 34.5 0.2 7.6e-07 29.4 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55378093|ref|YP_135943.1| - 0.0003 20.9 0.2 0.25 11.4 0.0 3.0 3 1 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|55378093|ref|YP_135943.1| - 0.0013 18.3 0.3 1.7 8.1 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|55378093|ref|YP_135943.1| - 0.015 15.1 0.7 9 6.0 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding ThuA PF06283.6 gi|55378094|ref|YP_135944.1| - 4e-44 150.9 0.5 4.7e-44 150.6 0.3 1.0 1 0 0 1 1 1 1 Trehalose utilisation HxlR PF01638.12 gi|55378095|ref|YP_135945.1| - 5.4e-29 99.6 0.0 6.5e-29 99.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|55378095|ref|YP_135945.1| - 0.0057 16.3 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|55378095|ref|YP_135945.1| - 0.0069 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|55378095|ref|YP_135945.1| - 0.048 13.4 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF505 PF04458.7 gi|55378095|ref|YP_135945.1| - 0.071 11.2 0.1 0.085 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) YjcQ PF09639.5 gi|55378095|ref|YP_135945.1| - 0.086 12.9 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 YjcQ protein HTH_34 PF13601.1 gi|55378095|ref|YP_135945.1| - 0.087 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain CoA_binding_2 PF13380.1 gi|55378096|ref|YP_135946.1| - 1.2e-34 118.9 0.0 1.4e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|55378096|ref|YP_135946.1| - 1.4e-05 25.4 0.0 1.8e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|55378096|ref|YP_135946.1| - 0.045 14.2 0.0 0.11 12.9 0.0 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF393 PF04134.7 gi|55378097|ref|YP_135947.1| - 2.5e-12 47.9 0.1 2.9e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 BolA PF01722.13 gi|55378098|ref|YP_135948.1| - 1.1e-18 66.9 0.0 1.2e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.19 gi|55378099|ref|YP_135949.1| - 3.4e-16 58.9 0.0 5.9e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|55378099|ref|YP_135949.1| - 0.00016 21.8 0.0 0.00026 21.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|55378099|ref|YP_135949.1| - 0.094 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 ArsC family Beta-Casp PF10996.3 gi|55378101|ref|YP_135951.1| - 1.4e-30 105.8 0.0 3.4e-30 104.5 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|55378101|ref|YP_135951.1| - 2.7e-21 76.1 0.9 4.5e-21 75.4 0.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|55378101|ref|YP_135951.1| - 5.6e-13 48.4 0.0 2.2e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|55378101|ref|YP_135951.1| - 4.7e-12 45.8 0.2 4.2e-11 42.7 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|55378101|ref|YP_135951.1| - 3.3e-06 26.5 0.1 6.2e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|55378101|ref|YP_135951.1| - 0.00019 21.0 0.0 0.00054 19.5 0.0 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|55378101|ref|YP_135951.1| - 0.00065 19.4 0.0 0.0015 18.2 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|55378101|ref|YP_135951.1| - 0.009 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 KH domain DHH PF01368.15 gi|55378102|ref|YP_135952.1| - 1e-15 57.6 0.1 1.5e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|55378102|ref|YP_135952.1| - 1.7e-12 46.8 0.0 4e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain Sulfate_transp PF00916.15 gi|55378103|ref|YP_135953.1| - 1.1e-06 27.8 10.5 1.1e-06 27.8 7.3 1.8 1 1 0 1 1 1 1 Sulfate transporter family PsbW PF07123.7 gi|55378103|ref|YP_135953.1| - 0.66 10.0 8.3 1.8 8.6 0.4 2.8 2 1 1 3 3 3 0 Photosystem II reaction centre W protein (PsbW) Mob_synth_C PF06463.8 gi|55378104|ref|YP_135954.1| - 3.7e-32 110.7 0.0 7.3e-32 109.7 0.0 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|55378104|ref|YP_135954.1| - 2.3e-22 79.9 0.0 4.5e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|55378104|ref|YP_135954.1| - 1.4e-08 34.7 0.0 3.4e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|55378104|ref|YP_135954.1| - 1.2e-07 31.9 0.0 2.3e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|55378104|ref|YP_135954.1| - 0.012 15.6 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 49 Cytochrom_C PF00034.16 gi|55378104|ref|YP_135954.1| - 0.023 15.5 0.1 9.1 7.1 0.0 2.8 3 0 0 3 3 3 0 Cytochrome c NTP_transf_3 PF12804.2 gi|55378106|ref|YP_135956.1| - 4.3e-33 114.6 0.2 5.2e-33 114.3 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|55378106|ref|YP_135956.1| - 0.006 16.2 0.0 0.018 14.7 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAM92 PF06730.6 gi|55378106|ref|YP_135956.1| - 0.061 12.6 0.0 0.16 11.2 0.0 1.7 2 0 0 2 2 2 0 FAM92 protein AFOR_C PF01314.13 gi|55378107|ref|YP_135957.1| - 7.3e-97 324.4 0.1 1.6e-96 323.3 0.0 1.6 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|55378107|ref|YP_135957.1| - 6.3e-63 211.7 0.0 8.8e-63 211.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain MgtE PF01769.11 gi|55378109|ref|YP_135959.1| - 0.0046 17.2 0.8 0.005 17.1 0.6 1.0 1 0 0 1 1 1 1 Divalent cation transporter DUF3325 PF11804.3 gi|55378109|ref|YP_135959.1| - 0.19 11.6 4.8 0.24 11.3 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) TcpE PF12648.2 gi|55378109|ref|YP_135959.1| - 0.25 11.5 3.4 0.43 10.7 2.3 1.5 1 1 0 1 1 1 0 TcpE family ABC2_membrane_2 PF12679.2 gi|55378109|ref|YP_135959.1| - 0.68 8.7 5.0 0.83 8.4 3.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Zn-ribbon_8 PF09723.5 gi|55378110|ref|YP_135960.1| - 0.0025 17.7 2.3 0.0034 17.2 1.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain RNHCP PF12647.2 gi|55378110|ref|YP_135960.1| - 0.0038 17.0 0.1 0.0038 17.0 0.1 1.0 1 0 0 1 1 1 1 RNHCP domain zf-C3HC4_3 PF13920.1 gi|55378110|ref|YP_135960.1| - 0.0079 15.8 0.3 0.0089 15.6 0.2 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|55378110|ref|YP_135960.1| - 0.0094 15.7 0.6 0.012 15.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|55378110|ref|YP_135960.1| - 0.012 14.8 1.2 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|55378110|ref|YP_135960.1| - 0.019 14.2 0.6 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RRN7 PF11781.3 gi|55378110|ref|YP_135960.1| - 0.021 14.3 2.6 0.19 11.2 0.2 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|55378110|ref|YP_135960.1| - 0.029 14.0 0.3 0.029 14.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|55378110|ref|YP_135960.1| - 0.029 14.0 3.2 0.19 11.4 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.1 gi|55378110|ref|YP_135960.1| - 0.12 12.6 3.2 1.1 9.6 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_5 PF14634.1 gi|55378110|ref|YP_135960.1| - 0.13 12.0 1.2 0.2 11.4 0.8 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Opy2 PF09463.5 gi|55378110|ref|YP_135960.1| - 0.19 11.8 2.6 8.6 6.5 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF329 PF03884.9 gi|55378110|ref|YP_135960.1| - 0.21 11.1 2.8 0.69 9.5 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Auto_anti-p27 PF06677.7 gi|55378110|ref|YP_135960.1| - 0.65 9.8 2.5 3.5 7.4 1.7 1.9 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|55378110|ref|YP_135960.1| - 0.93 9.1 3.6 4.1 7.1 0.1 2.3 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Dyp_perox PF04261.7 gi|55378113|ref|YP_135963.1| - 0.00043 19.1 0.0 0.00099 17.9 0.0 1.5 1 1 0 1 1 1 1 Dyp-type peroxidase family HR_lesion PF05514.6 gi|55378114|ref|YP_135964.1| - 0.1 12.4 0.0 0.1 12.4 0.0 1.0 1 0 0 1 1 1 0 HR-like lesion-inducing DUF4282 PF14110.1 gi|55378115|ref|YP_135965.1| - 4.2 7.6 7.2 5.7 7.2 5.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF418 PF04235.7 gi|55378116|ref|YP_135967.1| - 0.11 12.2 2.5 0.1 12.2 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF418) NicO PF03824.11 gi|55378116|ref|YP_135967.1| - 0.61 9.3 6.1 0.81 8.9 4.2 1.3 1 1 0 1 1 1 0 High-affinity nickel-transport protein Pox_I5 PF04713.7 gi|55378116|ref|YP_135967.1| - 1.1 9.0 4.1 1.7 8.3 2.9 1.4 1 1 0 1 1 1 0 Poxvirus protein I5 Nitrate_red_del PF02613.10 gi|55378118|ref|YP_135968.1| - 2.7e-20 72.5 0.2 3.6e-20 72.1 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.11 gi|55378119|ref|YP_135969.1| - 6e-27 93.7 0.3 1.5e-26 92.5 0.0 1.8 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|55378119|ref|YP_135969.1| - 4.1e-17 62.2 31.0 1.9e-08 34.5 7.4 5.5 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55378119|ref|YP_135969.1| - 2.9e-13 50.3 22.6 0.0023 18.6 0.4 6.6 6 0 0 6 6 6 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|55378119|ref|YP_135969.1| - 3e-13 49.8 32.2 1e-05 25.6 6.7 5.7 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55378119|ref|YP_135969.1| - 2.7e-12 45.7 48.3 0.00039 19.9 2.3 7.6 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|55378119|ref|YP_135969.1| - 3.2e-11 42.8 35.9 1.2e-05 25.0 4.5 4.6 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55378119|ref|YP_135969.1| - 5.4e-07 29.2 53.2 0.00042 20.0 1.4 7.3 7 1 0 7 7 7 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|55378119|ref|YP_135969.1| - 9.5e-07 28.7 32.9 0.054 13.5 1.9 5.7 3 2 4 7 7 7 5 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55378119|ref|YP_135969.1| - 1.4e-05 24.8 37.1 0.00035 20.3 5.4 5.7 5 2 3 8 8 8 4 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|55378119|ref|YP_135969.1| - 2e-05 24.8 29.6 0.011 16.0 0.2 6.3 5 1 2 7 7 7 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|55378119|ref|YP_135969.1| - 9.2e-05 22.2 15.2 0.0063 16.3 1.1 3.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55378119|ref|YP_135969.1| - 0.00028 21.2 37.5 0.45 10.9 1.3 7.1 6 2 1 7 7 7 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55378119|ref|YP_135969.1| - 0.016 15.1 3.2 0.016 15.1 2.2 6.5 7 0 0 7 7 6 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|55378119|ref|YP_135969.1| - 0.39 11.1 53.6 0.14 12.5 1.2 7.3 8 0 0 8 8 8 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|55378119|ref|YP_135969.1| - 6.4 7.5 65.8 0.038 14.5 3.0 7.4 8 0 0 8 8 7 0 4Fe-4S binding domain Molybdopterin PF00384.17 gi|55378120|ref|YP_135970.1| - 2.2e-33 115.6 3.7 1.8e-32 112.6 2.5 2.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55378120|ref|YP_135970.1| - 1.7e-18 66.4 0.1 4.2e-18 65.1 0.1 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|55378120|ref|YP_135970.1| - 2.5e-15 56.0 0.3 4.6e-15 55.1 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|55378120|ref|YP_135970.1| - 0.031 14.2 2.5 0.08 12.9 1.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|55378121|ref|YP_135971.1| - 7.7e-22 77.0 13.7 3.5e-21 74.9 7.1 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55378121|ref|YP_135971.1| - 4.6e-14 52.5 23.0 4.8e-07 30.0 5.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55378121|ref|YP_135971.1| - 5.6e-13 48.9 25.8 3.8e-08 33.4 5.4 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55378121|ref|YP_135971.1| - 4.1e-11 42.5 25.1 9e-06 25.3 5.1 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55378121|ref|YP_135971.1| - 1e-08 34.3 34.1 1.8e-06 27.2 1.0 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|55378121|ref|YP_135971.1| - 1.3e-07 31.4 21.4 7.1e-05 22.7 3.9 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55378121|ref|YP_135971.1| - 8.8e-07 28.5 36.6 0.00059 19.6 1.0 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|55378121|ref|YP_135971.1| - 1.3e-06 28.5 39.0 0.012 16.0 2.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|55378121|ref|YP_135971.1| - 2.5e-06 27.0 10.7 0.00064 19.4 2.0 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|55378121|ref|YP_135971.1| - 1.8e-05 24.4 26.8 0.00093 19.0 7.4 4.0 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|55378121|ref|YP_135971.1| - 0.00016 21.9 25.3 0.017 15.4 5.6 3.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55378121|ref|YP_135971.1| - 0.00017 22.2 24.4 0.037 14.7 0.4 4.5 3 2 2 5 5 5 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|55378121|ref|YP_135971.1| - 0.00083 19.4 2.3 0.00083 19.4 1.6 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|55378121|ref|YP_135971.1| - 0.016 15.6 19.7 0.25 11.7 0.8 3.7 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|55378121|ref|YP_135971.1| - 0.81 10.2 25.5 0.32 11.6 5.6 3.5 1 1 2 3 3 3 0 4Fe-4S single cluster domain BTP PF05232.7 gi|55378122|ref|YP_135972.1| - 0.0087 15.7 1.1 0.052 13.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial Transmembrane Pair family Cytochrom_B_N_2 PF13631.1 gi|55378122|ref|YP_135972.1| - 0.017 14.9 1.7 0.03 14.1 1.2 1.4 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Holin_BlyA PF05102.7 gi|55378122|ref|YP_135972.1| - 0.086 12.5 0.2 0.13 11.9 0.2 1.2 1 0 0 1 1 1 0 holin, BlyA family DUF2892 PF11127.3 gi|55378122|ref|YP_135972.1| - 3.5 7.5 6.3 4.6 7.1 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Cytochrom_B_N PF00033.14 gi|55378123|ref|YP_135973.1| - 4.3e-31 107.7 12.4 4.1e-29 101.2 10.0 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|55378123|ref|YP_135973.1| - 1.8e-21 76.3 13.4 2.5e-21 75.8 8.3 1.8 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM_3 PF13706.1 gi|55378123|ref|YP_135973.1| - 0.19 11.1 13.9 14 5.1 2.0 4.4 3 1 0 3 3 3 0 PepSY-associated TM helix Phage_holin_5 PF06946.6 gi|55378125|ref|YP_135975.1| - 0.029 14.5 0.9 0.032 14.3 0.6 1.1 1 0 0 1 1 1 0 Phage holin DUF2107 PF09880.4 gi|55378125|ref|YP_135975.1| - 0.055 13.3 0.6 0.067 13.0 0.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) DUF2537 PF10801.3 gi|55378125|ref|YP_135975.1| - 0.11 12.6 2.9 0.12 12.4 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) HlyIII PF03006.15 gi|55378125|ref|YP_135975.1| - 0.29 10.4 1.9 0.29 10.5 1.3 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF2721 PF11026.3 gi|55378125|ref|YP_135975.1| - 0.77 9.4 5.6 0.86 9.2 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) ABC2_membrane_2 PF12679.2 gi|55378125|ref|YP_135975.1| - 0.97 8.2 6.4 1 8.1 4.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1469 PF07332.6 gi|55378125|ref|YP_135975.1| - 9.3 6.0 8.9 9.6 5.9 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IclR PF01614.13 gi|55378126|ref|YP_135976.1| - 7.8e-37 125.8 0.0 1.2e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55378126|ref|YP_135976.1| - 1.3e-13 50.2 0.0 4.8e-13 48.4 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55378126|ref|YP_135976.1| - 1.7e-06 27.3 0.0 3.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|55378126|ref|YP_135976.1| - 7.8e-06 25.6 0.1 2.3e-05 24.1 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55378126|ref|YP_135976.1| - 3.3e-05 23.4 0.0 5.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|55378126|ref|YP_135976.1| - 3.3e-05 23.4 0.0 8.8e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|55378126|ref|YP_135976.1| - 4e-05 23.2 0.0 9.2e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|55378126|ref|YP_135976.1| - 0.00015 21.6 0.0 0.00036 20.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|55378126|ref|YP_135976.1| - 0.00034 20.2 0.0 0.00067 19.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|55378126|ref|YP_135976.1| - 0.0013 18.4 0.0 0.0032 17.2 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|55378126|ref|YP_135976.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|55378126|ref|YP_135976.1| - 0.0047 16.5 0.0 0.014 15.0 0.0 1.8 2 0 0 2 2 1 1 HTH domain Phage_CI_repr PF07022.8 gi|55378126|ref|YP_135976.1| - 0.0098 15.9 0.0 0.014 15.4 0.0 1.5 1 1 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Rrf2 PF02082.15 gi|55378126|ref|YP_135976.1| - 0.014 15.5 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_40 PF14493.1 gi|55378126|ref|YP_135976.1| - 0.035 14.3 0.0 0.066 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|55378126|ref|YP_135976.1| - 0.045 13.3 0.0 0.097 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_10 PF04967.7 gi|55378126|ref|YP_135976.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_34 PF13601.1 gi|55378126|ref|YP_135976.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|55378126|ref|YP_135976.1| - 0.099 12.1 0.2 0.27 10.7 0.0 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|55378126|ref|YP_135976.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RPA_C PF08784.6 gi|55378126|ref|YP_135976.1| - 0.12 12.7 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal FAA_hydrolase PF01557.13 gi|55378127|ref|YP_135977.1| - 8e-28 97.3 0.0 1.2e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrkA_C PF02080.16 gi|55378127|ref|YP_135977.1| - 0.094 12.3 0.3 0.76 9.4 0.0 2.2 2 0 0 2 2 2 0 TrkA-C domain Methyltransf_11 PF08241.7 gi|55378128|ref|YP_135978.1| - 0.00026 21.4 0.4 0.00036 20.9 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378128|ref|YP_135978.1| - 0.082 13.3 0.2 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain AMP-binding PF00501.23 gi|55378129|ref|YP_135979.1| - 2e-82 276.8 0.0 2.4e-82 276.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55378129|ref|YP_135979.1| - 4.7e-18 65.9 0.7 1.4e-17 64.3 0.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Dpy-30 PF05186.8 gi|55378129|ref|YP_135979.1| - 0.04 13.4 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 Dpy-30 motif DUF3147 PF11345.3 gi|55378130|ref|YP_135980.1| - 0.59 10.1 6.8 0.16 11.9 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3147) MARVEL PF01284.18 gi|55378130|ref|YP_135980.1| - 1.8 8.3 5.9 2.3 8.0 3.6 1.6 1 1 0 1 1 1 0 Membrane-associating domain DUF745 PF05335.8 gi|55378131|ref|YP_135981.1| - 4.4e-05 23.0 1.7 5.2e-05 22.8 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Med9 PF07544.8 gi|55378131|ref|YP_135981.1| - 0.00095 18.8 1.8 0.0013 18.3 1.2 1.4 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 SNARE PF05739.14 gi|55378131|ref|YP_135981.1| - 0.001 18.6 1.8 0.0017 17.9 1.1 1.5 1 1 0 1 1 1 1 SNARE domain RmuC PF02646.11 gi|55378131|ref|YP_135981.1| - 0.0011 17.9 0.5 0.0011 17.8 0.4 1.0 1 0 0 1 1 1 1 RmuC family Phage_GP20 PF06810.6 gi|55378131|ref|YP_135981.1| - 0.0014 18.1 3.8 0.0017 17.7 2.7 1.1 1 0 0 1 1 1 1 Phage minor structural protein GP20 Myosin_tail_1 PF01576.14 gi|55378131|ref|YP_135981.1| - 0.002 15.9 2.9 0.002 15.9 2.0 1.0 1 0 0 1 1 1 1 Myosin tail BLOC1_2 PF10046.4 gi|55378131|ref|YP_135981.1| - 0.0022 18.0 1.6 0.0032 17.5 1.1 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DegS PF05384.6 gi|55378131|ref|YP_135981.1| - 0.0022 17.2 1.2 0.0027 16.9 0.8 1.1 1 0 0 1 1 1 1 Sensor protein DegS Laminin_II PF06009.7 gi|55378131|ref|YP_135981.1| - 0.0024 17.6 2.2 0.0028 17.3 1.2 1.3 1 1 0 1 1 1 1 Laminin Domain II PspA_IM30 PF04012.7 gi|55378131|ref|YP_135981.1| - 0.0048 16.2 2.8 0.0054 16.1 1.9 1.2 1 0 0 1 1 1 1 PspA/IM30 family DASH_Spc34 PF08657.5 gi|55378131|ref|YP_135981.1| - 0.005 16.5 0.9 0.0054 16.4 0.7 1.1 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|55378131|ref|YP_135981.1| - 0.0056 16.2 1.5 0.007 15.9 1.0 1.1 1 0 0 1 1 1 1 IncA protein Prominin PF05478.6 gi|55378131|ref|YP_135981.1| - 0.0063 14.1 0.8 0.0067 14.0 0.5 1.0 1 0 0 1 1 1 1 Prominin TMF_DNA_bd PF12329.3 gi|55378131|ref|YP_135981.1| - 0.0068 16.1 3.1 0.014 15.1 2.1 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding Spc7 PF08317.6 gi|55378131|ref|YP_135981.1| - 0.0075 14.9 0.7 0.008 14.8 0.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|55378131|ref|YP_135981.1| - 0.0076 16.1 1.5 0.0085 15.9 1.1 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EAP30 PF04157.11 gi|55378131|ref|YP_135981.1| - 0.0077 15.4 0.7 0.009 15.1 0.5 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family MCPsignal PF00015.16 gi|55378131|ref|YP_135981.1| - 0.008 15.7 1.6 0.0097 15.4 1.1 1.2 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Reo_sigmaC PF04582.7 gi|55378131|ref|YP_135981.1| - 0.0094 15.1 1.0 0.0094 15.1 0.7 1.0 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Filament PF00038.16 gi|55378131|ref|YP_135981.1| - 0.01 15.3 1.5 0.011 15.2 1.0 1.1 1 0 0 1 1 1 0 Intermediate filament protein NPV_P10 PF05531.7 gi|55378131|ref|YP_135981.1| - 0.011 16.0 1.6 0.015 15.5 1.0 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|55378131|ref|YP_135981.1| - 0.011 15.4 1.9 0.013 15.1 1.3 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 TPR_MLP1_2 PF07926.7 gi|55378131|ref|YP_135981.1| - 0.014 15.1 2.1 0.019 14.6 1.5 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Bacillus_HBL PF05791.6 gi|55378131|ref|YP_135981.1| - 0.014 14.7 0.4 0.016 14.6 0.3 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Laminin_I PF06008.9 gi|55378131|ref|YP_135981.1| - 0.014 14.7 1.0 0.017 14.4 0.7 1.1 1 0 0 1 1 1 0 Laminin Domain I DivIVA PF05103.8 gi|55378131|ref|YP_135981.1| - 0.014 15.4 5.6 0.016 15.2 3.9 1.1 1 0 0 1 1 1 0 DivIVA protein DUF3450 PF11932.3 gi|55378131|ref|YP_135981.1| - 0.016 14.5 1.3 0.02 14.1 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Syntaxin-6_N PF09177.6 gi|55378131|ref|YP_135981.1| - 0.017 15.5 0.7 0.024 15.0 0.5 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF3373 PF11853.3 gi|55378131|ref|YP_135981.1| - 0.019 13.5 1.1 0.022 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) ADIP PF11559.3 gi|55378131|ref|YP_135981.1| - 0.022 14.6 0.7 0.025 14.4 0.5 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AKNA PF12443.3 gi|55378131|ref|YP_135981.1| - 0.024 14.6 0.2 0.032 14.2 0.1 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor HR1 PF02185.11 gi|55378131|ref|YP_135981.1| - 0.025 14.3 2.0 0.027 14.1 0.3 1.8 1 1 1 2 2 1 0 Hr1 repeat FlaC_arch PF05377.6 gi|55378131|ref|YP_135981.1| - 0.026 14.4 1.5 0.095 12.6 0.9 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Rab5-bind PF09311.6 gi|55378131|ref|YP_135981.1| - 0.026 14.4 1.5 0.03 14.2 1.0 1.0 1 0 0 1 1 1 0 Rabaptin-like protein TBPIP PF07106.8 gi|55378131|ref|YP_135981.1| - 0.028 13.9 0.9 0.03 13.8 0.7 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) SLT_2 PF13406.1 gi|55378131|ref|YP_135981.1| - 0.029 13.2 0.1 0.033 13.1 0.1 1.0 1 0 0 1 1 1 0 Transglycosylase SLT domain Atg14 PF10186.4 gi|55378131|ref|YP_135981.1| - 0.031 13.2 0.4 0.032 13.1 0.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FliD_C PF07195.7 gi|55378131|ref|YP_135981.1| - 0.031 13.5 0.5 0.042 13.1 0.3 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus YPEB PF14620.1 gi|55378131|ref|YP_135981.1| - 0.032 13.2 0.2 0.032 13.2 0.2 1.1 1 0 0 1 1 1 0 YpeB sporulation ATG16 PF08614.6 gi|55378131|ref|YP_135981.1| - 0.034 13.9 2.0 0.043 13.6 1.4 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|55378131|ref|YP_135981.1| - 0.038 13.8 1.6 0.063 13.0 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) SF-assemblin PF06705.6 gi|55378131|ref|YP_135981.1| - 0.039 13.1 3.2 0.048 12.8 2.2 1.1 1 0 0 1 1 1 0 SF-assemblin/beta giardin DUF2730 PF10805.3 gi|55378131|ref|YP_135981.1| - 0.041 13.6 1.0 0.054 13.2 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF869 PF05911.6 gi|55378131|ref|YP_135981.1| - 0.043 12.0 3.6 0.043 12.0 2.5 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) EcoR124_C PF12008.3 gi|55378131|ref|YP_135981.1| - 0.045 12.9 0.7 0.053 12.7 0.5 1.1 1 0 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal Sec2p PF06428.6 gi|55378131|ref|YP_135981.1| - 0.046 13.5 1.3 0.062 13.1 0.9 1.4 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF972 PF06156.8 gi|55378131|ref|YP_135981.1| - 0.048 14.0 0.5 0.052 13.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Spectrin PF00435.16 gi|55378131|ref|YP_135981.1| - 0.049 13.9 0.5 0.065 13.5 0.3 1.3 1 0 0 1 1 1 0 Spectrin repeat RTBV_P46 PF06216.6 gi|55378131|ref|YP_135981.1| - 0.049 12.4 0.3 0.057 12.2 0.2 1.0 1 0 0 1 1 1 0 Rice tungro bacilliform virus P46 protein Microtub_assoc PF07989.6 gi|55378131|ref|YP_135981.1| - 0.05 13.4 1.7 0.08 12.7 1.2 1.3 1 0 0 1 1 1 0 Microtubule associated FbpA PF05833.6 gi|55378131|ref|YP_135981.1| - 0.059 11.9 1.0 0.065 11.7 0.7 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Ax_dynein_light PF10211.4 gi|55378131|ref|YP_135981.1| - 0.06 13.1 1.9 0.074 12.8 1.3 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain COG2 PF06148.6 gi|55378131|ref|YP_135981.1| - 0.061 13.2 0.6 0.074 12.9 0.4 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2666 PF10869.3 gi|55378131|ref|YP_135981.1| - 0.061 13.3 1.0 0.071 13.1 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) Baculo_PEP_C PF04513.7 gi|55378131|ref|YP_135981.1| - 0.061 13.1 0.8 0.075 12.8 0.6 1.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|55378131|ref|YP_135981.1| - 0.063 13.1 2.8 0.12 12.2 1.5 1.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Seryl_tRNA_N PF02403.17 gi|55378131|ref|YP_135981.1| - 0.069 13.1 2.4 0.16 12.0 1.3 1.8 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Herpes_UL6 PF01763.11 gi|55378131|ref|YP_135981.1| - 0.07 11.2 0.7 0.069 11.3 0.5 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like HAUS5 PF14817.1 gi|55378131|ref|YP_135981.1| - 0.082 11.4 1.4 0.091 11.2 0.9 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF711 PF05167.7 gi|55378131|ref|YP_135981.1| - 0.083 11.5 1.2 0.085 11.5 0.8 1.0 1 0 0 1 1 1 0 Uncharacterised ACR (DUF711) Striatin PF08232.7 gi|55378131|ref|YP_135981.1| - 0.087 13.1 0.7 0.12 12.6 0.5 1.3 1 0 0 1 1 1 0 Striatin family Mnd1 PF03962.10 gi|55378131|ref|YP_135981.1| - 0.1 12.2 1.0 0.11 12.1 0.7 1.2 1 0 0 1 1 1 0 Mnd1 family EMP24_GP25L PF01105.19 gi|55378131|ref|YP_135981.1| - 0.1 12.2 0.4 0.13 11.9 0.3 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Cep57_CLD_2 PF14197.1 gi|55378131|ref|YP_135981.1| - 0.11 12.4 3.1 0.17 11.8 2.2 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 ArsR PF09824.4 gi|55378131|ref|YP_135981.1| - 0.11 11.7 0.3 0.15 11.3 0.2 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Fib_alpha PF08702.5 gi|55378131|ref|YP_135981.1| - 0.11 12.5 0.3 0.13 12.4 0.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Fe-S_assembly PF04384.8 gi|55378131|ref|YP_135981.1| - 0.14 12.5 0.3 0.22 11.9 0.2 1.5 1 0 0 1 1 1 0 Iron-sulphur cluster assembly FlxA PF14282.1 gi|55378131|ref|YP_135981.1| - 0.14 12.0 1.7 0.19 11.7 1.2 1.4 1 1 0 1 1 1 0 FlxA-like protein bZIP_1 PF00170.16 gi|55378131|ref|YP_135981.1| - 0.15 12.0 0.9 0.2 11.6 0.4 1.5 1 1 0 1 1 1 0 bZIP transcription factor Phage_lysis PF03245.8 gi|55378131|ref|YP_135981.1| - 0.15 12.0 2.8 0.25 11.3 1.9 1.4 1 1 0 1 1 1 0 Bacteriophage Rz lysis protein Ribosomal_L29 PF00831.18 gi|55378131|ref|YP_135981.1| - 0.17 11.5 2.3 0.38 10.4 0.4 2.1 1 1 1 2 2 2 0 Ribosomal L29 protein DUF4407 PF14362.1 gi|55378131|ref|YP_135981.1| - 0.18 10.7 2.3 0.2 10.5 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2802 PF10975.3 gi|55378131|ref|YP_135981.1| - 0.21 11.3 1.5 0.61 9.8 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) UPF0242 PF06785.6 gi|55378131|ref|YP_135981.1| - 0.21 10.2 1.4 0.24 10.0 0.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) DUF904 PF06005.7 gi|55378131|ref|YP_135981.1| - 0.32 11.3 4.4 0.47 10.7 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF904) SlyX PF04102.7 gi|55378131|ref|YP_135981.1| - 0.33 11.3 3.0 0.88 9.9 1.5 1.8 1 1 1 2 2 2 0 SlyX DUF4549 PF15082.1 gi|55378131|ref|YP_135981.1| - 0.53 9.9 2.7 2 8.0 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4549) DUF2508 PF10704.4 gi|55378131|ref|YP_135981.1| - 0.64 10.2 3.0 1.6 8.9 1.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2508) IF2_N PF04760.10 gi|55378131|ref|YP_135981.1| - 0.67 9.6 4.7 3.1 7.5 0.3 2.8 2 1 1 3 3 2 0 Translation initiation factor IF-2, N-terminal region YtxH PF12732.2 gi|55378131|ref|YP_135981.1| - 0.69 10.3 2.8 1.2 9.5 1.9 1.6 1 1 0 1 1 1 0 YtxH-like protein Kinetocho_Slk19 PF12709.2 gi|55378131|ref|YP_135981.1| - 0.78 9.8 3.7 4.5 7.4 2.4 2.1 1 1 0 1 1 1 0 Central kinetochore-associated AIF-MLS PF14962.1 gi|55378131|ref|YP_135981.1| - 0.93 9.1 4.7 1.1 8.8 3.2 1.0 1 0 0 1 1 1 0 Mitochondria Localisation Sequence DivIC PF04977.10 gi|55378131|ref|YP_135981.1| - 2.3 7.7 7.3 16 5.0 3.3 2.1 1 1 1 2 2 2 0 Septum formation initiator bZIP_2 PF07716.10 gi|55378131|ref|YP_135981.1| - 4.2 7.2 5.5 7.6 6.4 0.2 2.2 1 1 1 2 2 2 0 Basic region leucine zipper DUF998 PF06197.8 gi|55378132|ref|YP_135982.1| - 5.9e-31 107.1 15.4 7.2e-31 106.9 10.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Ni_hydr_CYTB PF01292.15 gi|55378132|ref|YP_135982.1| - 0.1 11.9 4.6 0.26 10.6 3.0 1.9 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 VIT1 PF01988.14 gi|55378132|ref|YP_135982.1| - 6.8 6.1 12.4 0.91 8.9 5.1 2.0 1 1 1 2 2 2 0 VIT family PAS_4 PF08448.5 gi|55378133|ref|YP_135983.1| - 1.9e-14 53.6 0.6 4.9e-14 52.2 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|55378133|ref|YP_135983.1| - 8.5e-13 48.0 0.0 2e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55378133|ref|YP_135983.1| - 1.9e-08 34.1 0.2 6.4e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|55378133|ref|YP_135983.1| - 3.6e-08 33.6 0.1 2.8e-07 30.7 0.0 2.5 3 1 1 4 4 4 1 PAS domain PAS_9 PF13426.1 gi|55378133|ref|YP_135983.1| - 4e-08 33.5 0.0 3.6e-07 30.4 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|55378133|ref|YP_135983.1| - 0.0026 17.4 0.0 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3140 PF11338.3 gi|55378133|ref|YP_135983.1| - 0.035 14.2 4.3 4 7.6 0.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3140) Med9 PF07544.8 gi|55378133|ref|YP_135983.1| - 0.052 13.2 0.3 1.1 9.0 0.1 3.0 3 0 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 HisKA PF00512.20 gi|55378133|ref|YP_135983.1| - 0.096 12.6 3.6 0.1 12.6 0.6 2.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain MS_channel PF00924.13 gi|55378134|ref|YP_135984.1| - 6.9e-57 192.1 0.1 1.1e-56 191.5 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel NnrS PF05940.7 gi|55378134|ref|YP_135984.1| - 0.074 11.9 2.8 0.1 11.5 2.0 1.1 1 0 0 1 1 1 0 NnrS protein CRS1_YhbY PF01985.16 gi|55378135|ref|YP_135985.1| - 1.5e-17 63.3 0.0 1.8e-17 63.1 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF2042 PF09743.4 gi|55378135|ref|YP_135985.1| - 0.018 14.3 0.0 0.02 14.2 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_11 PF08279.7 gi|55378135|ref|YP_135985.1| - 0.1 12.2 0.0 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 HTH domain Rpr2 PF04032.11 gi|55378136|ref|YP_135986.1| - 3.7e-18 65.1 0.3 4.3e-18 64.9 0.2 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.5 gi|55378136|ref|YP_135986.1| - 0.0064 16.4 1.0 0.012 15.6 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) zf-UBR PF02207.15 gi|55378136|ref|YP_135986.1| - 0.11 12.2 0.6 0.15 11.7 0.4 1.3 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) PspA_IM30 PF04012.7 gi|55378136|ref|YP_135986.1| - 0.16 11.3 1.7 0.19 11.0 1.2 1.1 1 0 0 1 1 1 0 PspA/IM30 family Glycos_transf_1 PF00534.15 gi|55378137|ref|YP_135987.1| - 2.1e-22 79.3 0.0 5.3e-21 74.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55378137|ref|YP_135987.1| - 8.2e-18 64.8 0.1 1.8e-16 60.5 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55378137|ref|YP_135987.1| - 7.8e-17 61.3 0.3 1.6e-16 60.2 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55378137|ref|YP_135987.1| - 7.7e-10 39.1 0.2 1.8e-09 37.9 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55378137|ref|YP_135987.1| - 6.8e-09 35.6 0.0 1.2e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 PEP-utilisers_N PF05524.8 gi|55378137|ref|YP_135987.1| - 0.14 11.9 0.5 0.94 9.2 0.4 2.2 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal MFS_1 PF07690.11 gi|55378138|ref|YP_135988.1| - 1.9e-21 76.1 75.0 1.3e-11 43.8 23.5 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily MFS_2 PF13347.1 gi|55378138|ref|YP_135988.1| - 8.2e-05 21.1 4.4 8.2e-05 21.1 3.1 3.2 3 1 0 3 3 3 1 MFS/sugar transport protein Glycos_transf_1 PF00534.15 gi|55378139|ref|YP_135989.1| - 2.9e-27 95.1 0.0 7.9e-27 93.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55378139|ref|YP_135989.1| - 1.1e-17 64.6 1.0 9.8e-17 61.5 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55378139|ref|YP_135989.1| - 4.7e-16 59.0 0.0 9.9e-16 57.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|55378139|ref|YP_135989.1| - 1.4e-15 57.6 0.1 3.9e-14 52.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55378139|ref|YP_135989.1| - 5.9e-06 26.4 0.0 1.4e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|55378139|ref|YP_135989.1| - 0.0023 17.7 0.0 0.0049 16.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Bacteriocin_IIc PF10439.4 gi|55378140|ref|YP_135990.1| - 0.31 11.2 3.0 0.39 10.8 2.1 1.1 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Peptidase_M48 PF01435.13 gi|55378141|ref|YP_135991.1| - 5e-24 85.1 0.1 1.5e-23 83.5 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|55378141|ref|YP_135991.1| - 2.3e-05 23.5 0.0 4.8e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.12 gi|55378141|ref|YP_135991.1| - 0.001 18.9 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|55378141|ref|YP_135991.1| - 0.052 13.5 0.0 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Peptidase MA superfamily Amidase PF01425.16 gi|55378142|ref|YP_135992.1| - 4.2e-141 470.8 1.5 5.1e-141 470.5 1.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|55378143|ref|YP_135993.1| - 3.2e-16 58.8 2.6 5.7e-16 58.0 1.8 1.4 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF2120 PF09893.4 gi|55378143|ref|YP_135993.1| - 0.1 12.5 0.4 0.11 12.4 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) TFIIB PF00382.14 gi|55378144|ref|YP_135994.1| - 7.7e-43 144.1 0.2 3.5e-20 71.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55378144|ref|YP_135994.1| - 2.8e-17 61.7 4.1 9.4e-17 60.0 2.9 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|55378144|ref|YP_135994.1| - 0.018 14.3 5.5 0.041 13.1 0.0 3.8 5 0 0 5 5 5 0 Sigma-70, region 4 Rubredoxin PF00301.15 gi|55378144|ref|YP_135994.1| - 0.11 12.3 0.4 3.1 7.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|55378144|ref|YP_135994.1| - 0.14 11.8 1.5 0.3 10.7 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|55378144|ref|YP_135994.1| - 0.14 12.0 0.0 0.63 9.9 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.2 gi|55378144|ref|YP_135994.1| - 0.17 11.7 0.8 0.3 10.9 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|55378144|ref|YP_135994.1| - 0.19 11.5 1.5 0.95 9.2 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.5 gi|55378144|ref|YP_135994.1| - 0.34 10.4 1.7 1.1 8.7 1.2 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|55378144|ref|YP_135994.1| - 8 6.5 5.7 25 4.9 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.23 gi|55378145|ref|YP_135995.1| - 4.4e-13 49.0 0.1 5.7e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain HTH_25 PF13413.1 gi|55378145|ref|YP_135995.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Asn_synthase PF00733.16 gi|55378146|ref|YP_135996.1| - 3.6e-39 134.7 0.5 5.8e-39 134.1 0.4 1.3 1 0 0 1 1 1 1 Asparagine synthase PHP_C PF13263.1 gi|55378147|ref|YP_135997.1| - 2.6e-24 84.4 0.2 4.8e-24 83.6 0.2 1.5 1 0 0 1 1 1 1 PHP-associated Radical_SAM PF04055.16 gi|55378148|ref|YP_135998.1| - 1.7e-21 77.0 0.0 5.3e-21 75.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|55378148|ref|YP_135998.1| - 5.1e-11 42.8 0.0 1.3e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|55378148|ref|YP_135998.1| - 6e-10 39.1 0.0 1.2e-08 34.9 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain PaaB PF06243.6 gi|55378149|ref|YP_135999.1| - 1e-18 67.2 0.1 1.1e-18 67.1 0.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid degradation B DsbD PF02683.10 gi|55378151|ref|YP_136001.1| - 0.3 10.6 8.5 0.071 12.6 1.7 2.1 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.10 gi|55378152|ref|YP_136002.1| - 6.4e-25 87.9 9.9 8.4e-25 87.6 6.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|55378152|ref|YP_136002.1| - 1.7e-12 47.5 14.0 3.4e-12 46.5 9.5 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region ABC_tran PF00005.22 gi|55378153|ref|YP_136003.1| - 4.8e-30 104.6 0.0 6.4e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378153|ref|YP_136003.1| - 4.8e-14 53.0 0.1 2.1e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55378153|ref|YP_136003.1| - 1.9e-05 24.0 0.2 3.3e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55378153|ref|YP_136003.1| - 4.7e-05 23.4 1.2 8.7e-05 22.5 0.8 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|55378153|ref|YP_136003.1| - 0.00022 21.6 0.1 0.00034 21.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55378153|ref|YP_136003.1| - 0.00056 19.3 0.1 0.0011 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|55378153|ref|YP_136003.1| - 0.0006 18.4 0.0 0.00083 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55378153|ref|YP_136003.1| - 0.002 18.2 0.0 0.014 15.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|55378153|ref|YP_136003.1| - 0.0024 17.7 0.1 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|55378153|ref|YP_136003.1| - 0.0035 18.1 0.1 0.006 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|55378153|ref|YP_136003.1| - 0.0037 16.9 0.2 0.01 15.4 0.0 1.7 2 0 0 2 2 2 1 NACHT domain DUF3584 PF12128.3 gi|55378153|ref|YP_136003.1| - 0.0062 13.9 0.6 0.0085 13.4 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_33 PF13671.1 gi|55378153|ref|YP_136003.1| - 0.0069 16.2 0.1 0.01 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|55378153|ref|YP_136003.1| - 0.0089 16.0 0.1 0.012 15.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|55378153|ref|YP_136003.1| - 0.01 15.5 0.0 0.028 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|55378153|ref|YP_136003.1| - 0.014 15.8 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein SMC_N PF02463.14 gi|55378153|ref|YP_136003.1| - 0.015 14.5 0.1 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|55378153|ref|YP_136003.1| - 0.017 15.2 0.4 0.043 13.9 0.3 2.0 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|55378153|ref|YP_136003.1| - 0.019 14.5 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|55378153|ref|YP_136003.1| - 0.022 13.9 0.1 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PEPCK_ATP PF01293.15 gi|55378153|ref|YP_136003.1| - 0.024 13.1 0.2 0.034 12.6 0.2 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Zeta_toxin PF06414.7 gi|55378153|ref|YP_136003.1| - 0.03 13.4 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|55378153|ref|YP_136003.1| - 0.03 13.7 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|55378153|ref|YP_136003.1| - 0.03 13.7 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|55378153|ref|YP_136003.1| - 0.032 14.5 0.0 0.075 13.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.15 gi|55378153|ref|YP_136003.1| - 0.055 12.1 0.1 0.074 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SRPRB PF09439.5 gi|55378153|ref|YP_136003.1| - 0.087 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_15 PF13175.1 gi|55378153|ref|YP_136003.1| - 0.096 11.7 0.0 0.43 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|55378153|ref|YP_136003.1| - 0.11 11.6 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|55378153|ref|YP_136003.1| - 0.12 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|55378153|ref|YP_136003.1| - 0.15 11.5 0.5 0.36 10.2 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|55378153|ref|YP_136003.1| - 0.2 10.5 0.5 0.3 9.9 0.3 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein CcmB PF03379.8 gi|55378154|ref|YP_136004.1| - 4.1e-18 65.3 13.2 4.9e-18 65.1 9.2 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|55378154|ref|YP_136004.1| - 1.7e-08 33.8 9.5 2e-08 33.6 6.6 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|55378154|ref|YP_136004.1| - 5e-06 25.8 13.1 6.7e-06 25.4 9.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|55378154|ref|YP_136004.1| - 6.9e-06 25.3 8.4 6.9e-06 25.3 5.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|55378154|ref|YP_136004.1| - 0.0068 15.7 3.5 0.0089 15.3 2.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|55378154|ref|YP_136004.1| - 0.18 10.6 18.5 0.81 8.4 12.8 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF3413 PF11893.3 gi|55378154|ref|YP_136004.1| - 8.9 5.1 9.8 9.1 5.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) Cytochrom_C_asm PF01578.15 gi|55378155|ref|YP_136005.1| - 1.2e-24 87.0 10.6 1.2e-24 87.0 7.3 3.1 2 1 1 3 3 3 1 Cytochrome C assembly protein Cyt_c_ox_IV PF12270.3 gi|55378155|ref|YP_136005.1| - 0.01 15.5 1.0 0.01 15.5 0.7 3.7 4 0 0 4 4 4 0 Cytochrome c oxidase subunit IV Thioredoxin_7 PF13899.1 gi|55378156|ref|YP_136006.1| - 3.1e-11 43.1 0.0 4e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|55378156|ref|YP_136006.1| - 2.6e-08 34.0 0.1 6.2e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|55378156|ref|YP_136006.1| - 1.4e-07 31.1 0.0 2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.10 gi|55378156|ref|YP_136006.1| - 2e-06 27.5 0.1 2.6e-06 27.2 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF255 Redoxin PF08534.5 gi|55378156|ref|YP_136006.1| - 3.8e-05 23.2 0.0 4.1e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|55378156|ref|YP_136006.1| - 0.00017 21.2 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|55378156|ref|YP_136006.1| - 0.0026 17.8 0.0 0.004 17.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like CCP_MauG PF03150.9 gi|55378157|ref|YP_136007.1| - 1.4e-57 194.4 0.2 5.1e-53 179.6 0.0 2.5 2 1 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.16 gi|55378157|ref|YP_136007.1| - 3.1e-08 34.3 1.6 0.001 19.8 0.9 3.2 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|55378157|ref|YP_136007.1| - 3.3e-05 23.9 0.4 2.8 8.1 0.1 3.6 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.1 gi|55378157|ref|YP_136007.1| - 0.0076 15.8 0.1 3 7.5 0.0 2.5 2 0 0 2 2 2 2 Cytochrome c7 DUF1924 PF09086.6 gi|55378157|ref|YP_136007.1| - 0.021 14.8 0.1 0.41 10.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1924) Cytochrom_C_asm PF01578.15 gi|55378158|ref|YP_136008.1| - 7.1e-20 71.4 18.8 3e-19 69.4 12.9 1.8 2 0 0 2 2 2 1 Cytochrome C assembly protein Oxidored_molyb PF00174.14 gi|55378160|ref|YP_136010.1| - 2.5e-42 144.1 0.0 4.3e-42 143.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|55378160|ref|YP_136010.1| - 2.8e-12 46.4 0.7 4.1e-11 42.6 0.4 2.4 2 0 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain CcmE PF03100.10 gi|55378161|ref|YP_136011.1| - 3.5e-12 46.0 0.0 5.4e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 CcmE Copper-bind PF00127.15 gi|55378162|ref|YP_136012.1| - 1.3e-17 63.8 1.1 6.5e-17 61.5 0.8 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|55378162|ref|YP_136012.1| - 0.00035 20.4 0.0 0.00071 19.4 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain UCR_Fe-S_N PF10399.4 gi|55378162|ref|YP_136012.1| - 0.02 14.0 0.2 0.052 12.7 0.2 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cu-oxidase_2 PF07731.9 gi|55378163|ref|YP_136013.1| - 3.3e-30 104.3 14.2 1e-20 73.6 2.3 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|55378163|ref|YP_136013.1| - 1.5e-21 76.3 9.4 3.7e-17 62.1 1.1 2.5 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|55378163|ref|YP_136013.1| - 8.6e-10 38.7 0.1 2.4e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.4 gi|55378163|ref|YP_136013.1| - 0.0032 17.3 0.8 0.0055 16.5 0.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|55378163|ref|YP_136013.1| - 0.0035 17.2 0.1 0.16 11.9 0.0 2.7 2 2 0 2 2 2 1 Cupredoxin-like domain SprT-like PF10263.4 gi|55378163|ref|YP_136013.1| - 1.5 8.4 4.8 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 SprT-like family HTH_20 PF12840.2 gi|55378164|ref|YP_136014.1| - 2.3e-08 33.6 0.1 3.7e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55378164|ref|YP_136014.1| - 1e-05 24.9 0.2 2.1e-05 24.0 0.1 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|55378164|ref|YP_136014.1| - 0.00069 19.2 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|55378164|ref|YP_136014.1| - 0.0037 16.5 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 ArsR PF09824.4 gi|55378164|ref|YP_136014.1| - 0.0052 16.1 0.0 0.006 15.9 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator MarR_2 PF12802.2 gi|55378164|ref|YP_136014.1| - 0.031 13.9 0.1 0.042 13.5 0.1 1.2 1 0 0 1 1 1 0 MarR family TPP_enzyme_M PF00205.17 gi|55378164|ref|YP_136014.1| - 0.051 13.3 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain HTH_7 PF02796.10 gi|55378164|ref|YP_136014.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|55378164|ref|YP_136014.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0233 PF06781.7 gi|55378165|ref|YP_136015.1| - 0.14 11.8 0.4 0.19 11.3 0.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF3353 PF11833.3 gi|55378166|ref|YP_136016.1| - 0.00055 19.4 3.0 0.00066 19.1 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) Chromate_transp PF02417.10 gi|55378166|ref|YP_136016.1| - 0.0056 16.2 1.1 0.0069 15.9 0.7 1.1 1 0 0 1 1 1 1 Chromate transporter DUF372 PF04036.7 gi|55378166|ref|YP_136016.1| - 0.086 12.3 0.1 0.16 11.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF372) DUF2249 PF10006.4 gi|55378168|ref|YP_136018.1| - 4.8e-13 48.4 0.2 7.5e-13 47.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|55378168|ref|YP_136018.1| - 3.1e-05 23.5 0.0 4.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA TatD_DNase PF01026.16 gi|55378168|ref|YP_136018.1| - 0.064 12.4 0.1 0.064 12.4 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase GlutR_dimer PF00745.15 gi|55378169|ref|YP_136019.1| - 3.5e-12 46.1 0.7 4e-12 45.9 0.5 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Cadherin_2 PF08266.7 gi|55378169|ref|YP_136019.1| - 0.13 11.8 0.4 0.17 11.4 0.3 1.1 1 0 0 1 1 1 0 Cadherin-like Cupin_2 PF07883.6 gi|55378170|ref|YP_136020.1| - 2.4e-10 39.7 0.0 4e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.1 gi|55378170|ref|YP_136020.1| - 0.00091 18.8 0.1 0.00098 18.7 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.14 gi|55378170|ref|YP_136020.1| - 0.012 15.3 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain DUF2249 PF10006.4 gi|55378171|ref|YP_136021.1| - 1.8e-23 81.8 0.1 2e-23 81.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF1180 PF06679.7 gi|55378173|ref|YP_136023.1| - 0.44 10.4 8.7 1.1 9.0 6.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) NnrU PF07298.6 gi|55378174|ref|YP_136024.1| - 0.014 14.7 0.9 0.046 13.0 0.3 1.8 1 1 1 2 2 2 0 NnrU protein Collar PF07484.7 gi|55378174|ref|YP_136024.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Phage Tail Collar Domain DUF3978 PF13123.1 gi|55378174|ref|YP_136024.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3978) AIRS PF00586.19 gi|55378175|ref|YP_136025.1| - 4.2e-41 139.0 10.5 3.8e-25 87.9 0.1 3.4 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|55378175|ref|YP_136025.1| - 2e-39 135.0 5.0 2.5e-26 92.4 0.4 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain HATPase_c PF02518.21 gi|55378176|ref|YP_136026.1| - 4.2e-22 77.9 0.0 8.7e-22 76.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55378176|ref|YP_136026.1| - 1.4e-13 50.5 4.1 1.8e-12 47.0 1.0 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|55378176|ref|YP_136026.1| - 2.9e-07 30.8 0.0 1.1e-06 28.9 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|55378176|ref|YP_136026.1| - 1.9e-06 27.8 0.6 8.6e-06 25.7 0.1 2.2 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|55378176|ref|YP_136026.1| - 5e-05 22.9 0.2 0.00035 20.3 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|55378176|ref|YP_136026.1| - 0.00059 19.8 0.0 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|55378176|ref|YP_136026.1| - 0.00067 19.3 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HSDR_N PF04313.9 gi|55378176|ref|YP_136026.1| - 0.015 15.0 0.4 0.043 13.5 0.0 1.9 2 1 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) HATPase_c_5 PF14501.1 gi|55378176|ref|YP_136026.1| - 0.035 13.8 0.0 0.11 12.2 0.0 1.8 1 1 0 1 1 1 0 GHKL domain FIST PF08495.5 gi|55378177|ref|YP_136027.1| - 1.6e-40 138.3 5.6 2e-40 138.0 1.6 2.2 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.4 gi|55378177|ref|YP_136027.1| - 2e-36 124.9 0.5 4e-36 123.9 0.1 1.7 2 0 0 2 2 2 1 FIST C domain His_biosynth PF00977.16 gi|55378179|ref|YP_136029.1| - 3.8e-79 265.1 0.3 4.3e-79 264.9 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|55378179|ref|YP_136029.1| - 2.6e-09 36.3 0.0 2.2e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|55378179|ref|YP_136029.1| - 2.4e-07 30.0 0.8 0.00037 19.6 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|55378179|ref|YP_136029.1| - 2.5e-05 23.5 1.6 0.012 14.8 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|55378179|ref|YP_136029.1| - 0.0026 17.0 0.6 0.0066 15.7 0.1 1.9 2 1 1 3 3 3 1 PcrB family TMP-TENI PF02581.12 gi|55378179|ref|YP_136029.1| - 0.0053 15.9 0.2 0.18 10.8 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|55378179|ref|YP_136029.1| - 0.0065 15.4 0.4 0.054 12.4 0.0 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|55378179|ref|YP_136029.1| - 0.0066 15.3 1.0 0.016 14.1 0.1 1.8 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|55378179|ref|YP_136029.1| - 0.071 11.9 0.5 0.15 10.8 0.3 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase zinc_ribbon_2 PF13240.1 gi|55378180|ref|YP_136030.1| - 0.0061 16.0 19.6 0.05 13.0 4.4 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|55378180|ref|YP_136030.1| - 0.016 15.0 13.1 0.08 12.7 9.3 1.9 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55378180|ref|YP_136030.1| - 0.077 12.2 12.6 0.082 12.1 2.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.6 gi|55378180|ref|YP_136030.1| - 0.26 11.0 7.4 0.2 11.4 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) Ribosomal_L37e PF01907.14 gi|55378180|ref|YP_136030.1| - 0.5 10.2 7.2 2.2 8.1 0.7 2.5 2 0 0 2 2 2 0 Ribosomal protein L37e GCC2_GCC3 PF07699.8 gi|55378180|ref|YP_136030.1| - 6.8 6.3 8.5 21 4.7 4.0 2.6 1 1 1 2 2 2 0 GCC2 and GCC3 DnaJ_CXXCXGXG PF00684.14 gi|55378180|ref|YP_136030.1| - 7.6 6.6 11.6 25 5.0 7.9 1.9 1 1 1 2 2 2 0 DnaJ central domain RNA_pol_L_2 PF13656.1 gi|55378181|ref|YP_136031.1| - 4.3e-19 67.7 0.0 5e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|55378181|ref|YP_136031.1| - 2.1e-07 29.9 0.0 2.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zf-C2H2 PF00096.21 gi|55378182|ref|YP_136032.1| - 0.0002 21.5 0.1 0.00029 21.0 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|55378182|ref|YP_136032.1| - 0.0053 17.0 0.4 0.0079 16.4 0.3 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|55378182|ref|YP_136032.1| - 0.05 13.1 0.0 0.092 12.2 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain PyrI_C PF02748.10 gi|55378182|ref|YP_136032.1| - 0.059 12.8 0.1 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2HC_2 PF13913.1 gi|55378182|ref|YP_136032.1| - 0.12 12.0 0.4 0.18 11.4 0.3 1.2 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-CHCC PF10276.4 gi|55378182|ref|YP_136032.1| - 0.39 10.5 0.4 0.39 10.5 0.2 1.7 2 0 0 2 2 2 0 Zinc-finger domain COX3 PF00510.13 gi|55378183|ref|YP_136034.1| - 8.9e-38 130.1 18.2 1.3e-37 129.6 12.6 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Zn_Tnp_IS1595 PF12760.2 gi|55378185|ref|YP_136035.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55378185|ref|YP_136035.1| - 0.072 13.0 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|55378185|ref|YP_136035.1| - 1.5 8.1 4.5 9.2 5.6 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain ADH_N PF08240.7 gi|55378187|ref|YP_136037.1| - 3.9e-28 97.3 1.2 3.9e-28 97.3 0.8 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55378187|ref|YP_136037.1| - 1.5e-17 63.3 1.0 2e-17 62.9 0.2 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55378187|ref|YP_136037.1| - 2.9e-06 28.1 1.0 5.8e-06 27.2 0.7 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|55378187|ref|YP_136037.1| - 0.18 10.9 5.1 0.52 9.5 3.6 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF2387 PF09526.5 gi|55378188|ref|YP_136038.1| - 0.034 14.0 0.3 0.052 13.4 0.2 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_ligase_IV PF11411.3 gi|55378188|ref|YP_136038.1| - 0.076 12.7 1.1 0.2 11.3 0.1 2.2 2 0 0 2 2 2 0 DNA ligase IV GATA PF00320.22 gi|55378188|ref|YP_136038.1| - 0.27 10.6 2.6 7 6.0 0.2 2.3 2 0 0 2 2 2 0 GATA zinc finger Usp PF00582.21 gi|55378189|ref|YP_136039.1| - 8.5e-20 71.3 1.4 1e-19 71.1 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|55378189|ref|YP_136039.1| - 0.067 13.0 0.1 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 B12 binding domain Met_10 PF02475.11 gi|55378190|ref|YP_136040.1| - 5.2e-60 202.4 0.0 6.7e-60 202.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|55378190|ref|YP_136040.1| - 2.9e-08 33.4 0.0 4.3e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|55378190|ref|YP_136040.1| - 7.4e-08 32.9 0.5 2.9e-07 31.0 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55378190|ref|YP_136040.1| - 1.7e-07 31.3 4.2 4.3e-07 29.9 0.1 2.5 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|55378190|ref|YP_136040.1| - 7.1e-07 28.7 0.0 2.7e-06 26.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|55378190|ref|YP_136040.1| - 1e-06 28.4 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|55378190|ref|YP_136040.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|55378190|ref|YP_136040.1| - 1.5e-05 24.2 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|55378190|ref|YP_136040.1| - 0.00031 20.1 0.1 0.002 17.5 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|55378190|ref|YP_136040.1| - 0.00089 20.0 0.2 0.028 15.2 0.0 2.6 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378190|ref|YP_136040.1| - 0.0043 17.3 0.0 0.0098 16.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|55378190|ref|YP_136040.1| - 0.0047 16.0 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_11 PF08241.7 gi|55378190|ref|YP_136040.1| - 0.0083 16.5 0.0 0.021 15.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|55378190|ref|YP_136040.1| - 0.049 12.3 0.0 0.073 11.7 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_23 PF13489.1 gi|55378190|ref|YP_136040.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|55378190|ref|YP_136040.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase TP_methylase PF00590.15 gi|55378191|ref|YP_136041.1| - 2.2e-19 70.0 0.3 2.6e-19 69.7 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|55378192|ref|YP_136042.1| - 2.5e-55 187.5 21.4 3e-55 187.2 14.8 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Glyoxalase_2 PF12681.2 gi|55378194|ref|YP_136044.1| - 1.1e-21 77.4 5.9 2.1e-12 47.5 0.4 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|55378194|ref|YP_136044.1| - 5.6e-21 74.8 3.3 1.2e-11 44.6 0.3 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|55378194|ref|YP_136044.1| - 2.6e-11 43.5 1.9 5.2e-05 23.2 0.1 3.1 2 2 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|55378194|ref|YP_136044.1| - 1.2e-05 25.3 0.9 0.26 11.1 0.0 3.9 2 2 0 2 2 2 2 Glyoxalase-like domain MMR_HSR1 PF01926.18 gi|55378196|ref|YP_136046.1| - 3.9e-20 71.9 0.0 7.2e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|55378196|ref|YP_136046.1| - 6.6e-16 57.8 0.0 1.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|55378196|ref|YP_136046.1| - 7.3e-13 48.0 0.1 7.8e-12 44.7 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|55378196|ref|YP_136046.1| - 2.4e-05 24.2 0.0 0.11 12.3 0.0 2.5 2 0 0 2 2 2 2 Dynamin family ArgK PF03308.11 gi|55378196|ref|YP_136046.1| - 0.0017 17.2 0.0 0.04 12.7 0.0 2.4 2 0 0 2 2 2 1 ArgK protein GTP_EFTU PF00009.22 gi|55378196|ref|YP_136046.1| - 0.0035 16.8 0.1 0.36 10.2 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|55378196|ref|YP_136046.1| - 0.0067 16.3 0.1 0.033 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|55378196|ref|YP_136046.1| - 0.0094 15.1 0.0 0.029 13.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|55378196|ref|YP_136046.1| - 0.0095 16.4 0.0 0.024 15.1 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|55378196|ref|YP_136046.1| - 0.011 14.9 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Arf PF00025.16 gi|55378196|ref|YP_136046.1| - 0.014 14.6 0.1 0.59 9.3 0.0 2.4 2 1 0 2 2 2 0 ADP-ribosylation factor family AAA_16 PF13191.1 gi|55378196|ref|YP_136046.1| - 0.018 15.0 0.0 0.043 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|55378196|ref|YP_136046.1| - 0.023 14.9 0.0 0.065 13.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_18 PF13238.1 gi|55378196|ref|YP_136046.1| - 0.024 14.9 1.0 0.15 12.3 0.7 2.4 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|55378196|ref|YP_136046.1| - 0.034 13.5 0.4 1.3 8.4 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|55378196|ref|YP_136046.1| - 0.055 12.6 0.0 0.14 11.3 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|55378196|ref|YP_136046.1| - 0.091 12.3 0.1 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|55378196|ref|YP_136046.1| - 0.1 12.4 0.0 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|55378196|ref|YP_136046.1| - 0.12 13.1 2.7 1.5 9.6 1.7 2.9 1 1 1 2 2 2 0 AAA domain DUF2813 PF11398.3 gi|55378196|ref|YP_136046.1| - 0.13 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_33 PF13671.1 gi|55378196|ref|YP_136046.1| - 0.16 11.8 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Ribosomal_L11 PF00298.14 gi|55378198|ref|YP_136048.1| - 8.1e-21 73.9 0.0 1.2e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|55378198|ref|YP_136048.1| - 5.9e-20 70.4 0.2 9.3e-20 69.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.16 gi|55378199|ref|YP_136049.1| - 2.8e-42 144.5 0.0 3.3e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|55378200|ref|YP_136050.1| - 1.2e-20 73.2 0.0 2.7e-20 72.1 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|55378201|ref|YP_136051.1| - 4.7e-15 55.7 18.4 6.3e-15 55.3 12.8 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF2067 PF09840.4 gi|55378201|ref|YP_136051.1| - 0.23 10.9 2.7 2.3 7.7 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) Cwf_Cwc_15 PF04889.7 gi|55378201|ref|YP_136051.1| - 0.95 9.1 9.7 1.1 8.9 6.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein NOA36 PF06524.7 gi|55378201|ref|YP_136051.1| - 1.5 8.0 8.3 1.6 7.8 5.7 1.2 1 0 0 1 1 1 0 NOA36 protein CENP-T PF15511.1 gi|55378201|ref|YP_136051.1| - 1.6 7.8 11.1 1.8 7.6 7.7 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T CDC45 PF02724.9 gi|55378201|ref|YP_136051.1| - 4.5 5.1 7.9 4.9 5.0 5.5 1.1 1 0 0 1 1 1 0 CDC45-like protein CARDB PF07705.6 gi|55378202|ref|YP_136052.1| - 1.1e-13 51.1 42.0 0.012 15.5 0.4 8.3 7 1 0 8 8 8 6 CARDB A2M_N_2 PF07703.9 gi|55378202|ref|YP_136052.1| - 0.51 10.1 5.0 8.3 6.2 0.1 4.3 3 1 0 3 3 3 0 Alpha-2-macroglobulin family N-terminal region Glyco_hydro_2 PF00703.16 gi|55378202|ref|YP_136052.1| - 1.8 9.0 17.5 22 5.5 0.3 6.8 6 0 0 6 6 6 0 Glycosyl hydrolases family 2 DUF2393 PF09624.5 gi|55378202|ref|YP_136052.1| - 2 7.9 4.4 41 3.6 0.0 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) PsbI PF02532.9 gi|55378203|ref|YP_136053.1| - 0.25 11.0 4.6 0.54 9.9 3.2 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Bactofilin PF04519.8 gi|55378207|ref|YP_136057.1| - 0.00041 20.3 5.3 0.00041 20.3 3.7 3.0 3 0 0 3 3 3 1 Polymer-forming cytoskeletal Ribosomal_S15 PF00312.17 gi|55378209|ref|YP_136059.1| - 4.9e-30 103.1 0.1 6.7e-30 102.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|55378209|ref|YP_136059.1| - 1.2e-22 79.4 0.0 2.1e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain STAT2_C PF12188.3 gi|55378209|ref|YP_136059.1| - 0.059 13.1 0.2 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 Signal transducer and activator of transcription 2 C terminal Ribosomal_S3Ae PF01015.13 gi|55378212|ref|YP_136062.1| - 2.2e-70 235.9 2.1 2.7e-70 235.6 1.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Spore_III_AF PF09581.5 gi|55378212|ref|YP_136062.1| - 0.027 14.3 1.9 0.049 13.5 1.3 1.5 1 1 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Copper-bind PF00127.15 gi|55378213|ref|YP_136063.1| - 1.1e-15 57.6 0.1 2e-15 56.8 0.1 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|55378213|ref|YP_136063.1| - 0.00069 19.4 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|55378213|ref|YP_136063.1| - 0.0054 16.6 4.3 0.0054 16.6 3.0 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.15 gi|55378213|ref|YP_136063.1| - 3.1 7.5 5.5 8.1 6.2 3.7 1.9 1 1 0 1 1 1 0 PKD domain ATP-grasp PF02222.17 gi|55378214|ref|YP_136064.1| - 4.6e-57 192.1 0.0 6.3e-57 191.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|55378214|ref|YP_136064.1| - 1.1e-20 74.1 0.7 2e-20 73.3 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55378214|ref|YP_136064.1| - 4.1e-09 35.6 0.0 1e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|55378214|ref|YP_136064.1| - 4e-08 32.8 0.0 1.8e-07 30.7 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.14 gi|55378214|ref|YP_136064.1| - 5.1e-05 22.4 0.0 8.7e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_3 PF02655.9 gi|55378214|ref|YP_136064.1| - 9.7e-05 22.2 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|55378214|ref|YP_136064.1| - 0.00024 20.4 0.0 0.00042 19.6 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|55378214|ref|YP_136064.1| - 0.0057 15.9 0.0 0.012 14.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|55378214|ref|YP_136064.1| - 0.021 14.3 0.0 0.12 11.7 0.0 2.0 1 1 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.5 gi|55378214|ref|YP_136064.1| - 0.12 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain PMT_2 PF13231.1 gi|55378215|ref|YP_136065.1| - 9.1e-12 45.1 9.1 9.1e-12 45.1 6.3 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|55378215|ref|YP_136065.1| - 3.4e-06 26.6 7.8 3.4e-06 26.6 5.4 1.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DMRL_synthase PF00885.14 gi|55378216|ref|YP_136066.1| - 8e-31 106.6 0.3 8.7e-31 106.5 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|55378217|ref|YP_136067.1| - 2.5e-67 227.4 0.0 2.8e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|55378217|ref|YP_136067.1| - 1.3e-07 31.0 0.1 3.8e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|55378217|ref|YP_136067.1| - 0.00036 18.9 0.0 0.00063 18.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DHquinase_II PF01220.14 gi|55378217|ref|YP_136067.1| - 0.13 11.5 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Dehydroquinase class II ATP-synt_C PF00137.16 gi|55378218|ref|YP_136068.1| - 1.8e-13 50.1 8.1 1.8e-13 50.1 5.6 1.8 1 1 1 2 2 2 1 ATP synthase subunit C NPCBM_assoc PF10633.4 gi|55378219|ref|YP_136069.1| - 0.071 13.1 5.5 0.17 11.9 0.1 2.9 3 1 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase LPAM_2 PF13627.1 gi|55378219|ref|YP_136069.1| - 0.59 9.9 4.7 1.3 8.8 3.2 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Cupin_2 PF07883.6 gi|55378220|ref|YP_136070.1| - 2.9e-13 49.1 0.9 5.7e-13 48.1 0.6 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|55378220|ref|YP_136070.1| - 0.0018 17.7 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|55378220|ref|YP_136070.1| - 0.0023 17.6 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain DUF824 PF05688.6 gi|55378220|ref|YP_136070.1| - 0.15 11.7 0.8 0.25 10.9 0.1 1.8 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) CTP_transf_2 PF01467.21 gi|55378221|ref|YP_136071.1| - 0.0022 18.0 0.1 0.0047 16.9 0.1 1.7 1 1 0 1 1 1 1 Cytidylyltransferase Prok-JAB PF14464.1 gi|55378222|ref|YP_136072.1| - 9.8e-14 50.8 0.0 1.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|55378222|ref|YP_136072.1| - 0.055 13.2 0.0 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|55378222|ref|YP_136072.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|55378222|ref|YP_136072.1| - 0.15 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 tRNA_anti-codon PF01336.20 gi|55378223|ref|YP_136073.1| - 2.6e-13 49.6 0.4 7.1e-13 48.2 0.1 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|55378223|ref|YP_136073.1| - 1.4e-10 40.9 0.5 3.5e-09 36.4 0.0 2.2 2 0 0 2 2 2 1 DHH family S1 PF00575.18 gi|55378223|ref|YP_136073.1| - 0.001 19.1 1.8 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 S1 RNA binding domain Rep_fac-A_3 PF08661.6 gi|55378223|ref|YP_136073.1| - 0.16 11.8 0.1 0.4 10.6 0.1 1.6 1 0 0 1 1 1 0 Replication factor A protein 3 PLDc_2 PF13091.1 gi|55378224|ref|YP_136074.1| - 3.1e-35 120.6 0.0 2.6e-20 72.4 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|55378224|ref|YP_136074.1| - 1.1e-05 25.0 0.2 0.00014 21.5 0.0 2.4 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|55378224|ref|YP_136074.1| - 0.031 13.2 0.0 6.6 5.6 0.0 2.3 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB HEAT_2 PF13646.1 gi|55378226|ref|YP_136075.1| - 9.1e-21 73.9 5.2 4.8e-12 45.9 3.4 2.9 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|55378226|ref|YP_136075.1| - 5.5e-12 44.9 13.3 0.00046 20.4 0.1 6.0 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|55378226|ref|YP_136075.1| - 2.1e-05 24.8 4.1 0.015 15.7 0.1 3.1 2 0 0 2 2 2 2 HEAT-like repeat Arm PF00514.18 gi|55378226|ref|YP_136075.1| - 5.5e-05 22.8 0.1 0.17 11.7 0.0 3.3 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat HEAT PF02985.17 gi|55378226|ref|YP_136075.1| - 8.3e-05 22.3 0.1 1.4 9.2 0.0 3.4 3 0 0 3 3 3 2 HEAT repeat EntA_Immun PF08951.5 gi|55378226|ref|YP_136075.1| - 0.0068 16.5 0.1 16 5.7 0.0 3.5 3 0 0 3 3 3 1 Enterocin A Immunity cwf21 PF08312.7 gi|55378226|ref|YP_136075.1| - 0.053 13.3 0.1 1.8 8.4 0.0 2.9 2 1 0 2 2 2 0 cwf21 domain IncA PF04156.9 gi|55378226|ref|YP_136075.1| - 0.17 11.4 4.4 0.28 10.7 3.1 1.3 1 0 0 1 1 1 0 IncA protein Xan_ur_permease PF00860.15 gi|55378225|ref|YP_136076.1| - 8.4e-80 268.1 34.6 8.4e-80 268.1 24.0 1.6 2 0 0 2 2 2 1 Permease family AIRC PF00731.15 gi|55378228|ref|YP_136078.1| - 3.3e-51 172.5 0.0 4.2e-51 172.1 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|55378229|ref|YP_136079.1| - 4.5e-27 93.8 0.2 6e-27 93.4 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4244 PF14029.1 gi|55378229|ref|YP_136079.1| - 0.047 12.7 0.6 0.72 8.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) DUF1469 PF07332.6 gi|55378229|ref|YP_136079.1| - 0.49 10.1 4.8 9.4 5.9 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2839 PF10999.3 gi|55378229|ref|YP_136079.1| - 1.2 9.2 3.3 1.3 9.0 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2839) Oxidored_q6 PF01058.17 gi|55378230|ref|YP_136080.1| - 6.5e-22 77.5 0.2 9.1e-22 77.0 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|55378231|ref|YP_136081.1| - 1.6e-64 217.5 0.0 2.2e-41 141.6 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|55378231|ref|YP_136081.1| - 6.8e-29 100.1 0.1 1.2e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|55378232|ref|YP_136082.1| - 6.5e-83 278.3 10.1 7.8e-83 278.0 7.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|55378233|ref|YP_136083.1| - 4.4e-13 48.2 8.8 7.4e-07 28.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|55378233|ref|YP_136083.1| - 2.2e-11 43.9 10.8 3.4e-11 43.3 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55378233|ref|YP_136083.1| - 1.1e-09 38.0 8.5 1.6e-09 37.4 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55378233|ref|YP_136083.1| - 1.4e-09 38.5 5.3 1.2e-05 25.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|55378233|ref|YP_136083.1| - 9.7e-09 34.7 11.8 0.00023 20.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|55378233|ref|YP_136083.1| - 1.1e-08 35.2 12.0 2.7e-08 33.9 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55378233|ref|YP_136083.1| - 1.3e-08 34.4 12.2 3e-08 33.3 8.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|55378233|ref|YP_136083.1| - 2.5e-08 33.8 21.0 5.8e-07 29.4 8.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55378233|ref|YP_136083.1| - 4e-08 32.7 9.2 0.00015 21.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|55378233|ref|YP_136083.1| - 2.8e-07 30.3 8.5 0.0014 18.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|55378233|ref|YP_136083.1| - 9.3e-06 25.9 12.6 0.0025 18.1 9.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55378233|ref|YP_136083.1| - 0.00015 22.1 12.7 0.035 14.5 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|55378233|ref|YP_136083.1| - 0.00016 21.9 14.3 0.0036 17.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55378233|ref|YP_136083.1| - 0.0064 17.0 9.4 0.39 11.3 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|55378233|ref|YP_136083.1| - 0.15 12.4 15.3 0.82 10.1 1.6 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|55378233|ref|YP_136083.1| - 0.31 10.9 6.1 3.2 7.6 4.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|55378234|ref|YP_136084.1| - 1.7e-12 47.3 6.7 1.7e-12 47.3 4.6 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|55378234|ref|YP_136084.1| - 0.0003 20.7 10.2 0.00043 20.2 7.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4401 PF14351.1 gi|55378234|ref|YP_136084.1| - 0.27 10.1 10.4 0.31 9.9 7.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) PRA1 PF03208.14 gi|55378234|ref|YP_136084.1| - 0.84 8.9 7.5 0.93 8.8 5.2 1.1 1 0 0 1 1 1 0 PRA1 family protein VirB3 PF05101.8 gi|55378234|ref|YP_136084.1| - 6.3 6.8 8.1 13 5.8 5.6 1.6 1 1 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Oxidored_q2 PF00420.19 gi|55378236|ref|YP_136086.1| - 3.5e-13 48.9 2.5 3.7e-13 48.8 1.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4059 PF13268.1 gi|55378236|ref|YP_136086.1| - 0.13 12.4 0.7 0.17 12.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4059) NicO PF03824.11 gi|55378236|ref|YP_136086.1| - 0.13 11.5 2.1 0.12 11.7 1.5 1.0 1 0 0 1 1 1 0 High-affinity nickel-transport protein Oxidored_q1 PF00361.15 gi|55378237|ref|YP_136087.1| - 2.1e-73 246.9 11.4 2.1e-73 246.9 7.9 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|55378237|ref|YP_136087.1| - 1.1e-12 47.2 0.2 6.1e-12 44.9 0.0 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|55378237|ref|YP_136087.1| - 0.021 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus SBP_bac_7 PF03480.8 gi|55378237|ref|YP_136087.1| - 0.096 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Oxidored_q1 PF00361.15 gi|55378238|ref|YP_136088.1| - 7.2e-70 235.3 22.8 7.2e-70 235.3 15.8 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|55378238|ref|YP_136088.1| - 9.9e-05 22.1 0.2 9.9e-05 22.1 0.2 3.4 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|55378239|ref|YP_136089.1| - 9.8e-56 188.9 14.0 9.8e-56 188.9 9.7 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|55378239|ref|YP_136089.1| - 6.4e-05 22.4 1.5 6.4e-05 22.4 1.0 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2583 PF10762.4 gi|55378239|ref|YP_136089.1| - 2.3 8.4 4.9 9.8 6.3 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) Lactamase_B PF00753.22 gi|55378240|ref|YP_136090.1| - 2.4e-15 56.7 0.1 3.7e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55378240|ref|YP_136090.1| - 3.1e-05 23.6 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ApoLp-III PF07464.6 gi|55378241|ref|YP_136091.1| - 0.034 14.1 1.1 0.059 13.4 0.7 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) TMPIT PF07851.8 gi|55378241|ref|YP_136091.1| - 0.1 11.6 0.1 0.11 11.5 0.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF883 PF05957.8 gi|55378241|ref|YP_136091.1| - 0.17 12.2 2.9 0.86 10.0 0.5 2.0 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4398 PF14346.1 gi|55378241|ref|YP_136091.1| - 0.91 9.6 7.9 6.8 6.8 5.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) Phage_tail_T PF06223.7 gi|55378242|ref|YP_136092.1| - 0.064 13.6 0.1 0.15 12.4 0.1 1.6 1 0 0 1 1 1 0 Minor tail protein T MerR-DNA-bind PF09278.6 gi|55378243|ref|YP_136093.1| - 1.2 9.5 7.8 12 6.4 5.4 2.0 1 1 0 1 1 1 0 MerR, DNA binding gpW PF02831.10 gi|55378244|ref|YP_136094.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 gpW Phage_integrase PF00589.17 gi|55378249|ref|YP_136099.1| - 1e-09 38.2 0.2 8.9e-09 35.2 0.1 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|55378249|ref|YP_136099.1| - 9e-08 32.3 0.1 1.9e-07 31.3 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|55378249|ref|YP_136099.1| - 3e-07 30.5 0.1 7.8e-07 29.1 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Pirin PF02678.11 gi|55378250|ref|YP_136100.1| - 1.5e-23 82.6 0.0 2.6e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|55378250|ref|YP_136100.1| - 3.1e-12 46.4 0.0 3.2e-11 43.2 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pyr_redox_2 PF07992.9 gi|55378251|ref|YP_136101.1| - 8.1e-16 58.5 1.6 1.6e-11 44.4 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55378251|ref|YP_136101.1| - 4.3e-13 48.9 0.4 7.9e-08 31.5 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|55378251|ref|YP_136101.1| - 1.1e-10 41.8 0.7 3.6e-06 27.1 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55378251|ref|YP_136101.1| - 3.8e-10 38.7 0.1 9.4e-05 21.0 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|55378251|ref|YP_136101.1| - 2.5e-08 33.8 0.1 6.9e-05 22.6 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|55378251|ref|YP_136101.1| - 5e-07 28.9 0.2 0.00023 20.1 0.0 2.2 1 1 1 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|55378251|ref|YP_136101.1| - 2.5e-06 26.7 0.1 8.5e-06 25.0 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|55378251|ref|YP_136101.1| - 5.2e-06 25.7 5.8 0.0059 15.7 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|55378251|ref|YP_136101.1| - 1.2e-05 24.3 1.1 0.00036 19.4 0.1 2.2 1 1 1 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|55378251|ref|YP_136101.1| - 0.00025 20.1 0.1 0.031 13.1 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|55378251|ref|YP_136101.1| - 0.00059 19.0 0.6 0.00059 19.0 0.4 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55378251|ref|YP_136101.1| - 0.00072 19.5 0.0 0.0017 18.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|55378251|ref|YP_136101.1| - 0.00099 17.8 1.5 0.19 10.2 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase K_oxygenase PF13434.1 gi|55378251|ref|YP_136101.1| - 0.003 16.5 0.1 0.36 9.6 0.0 2.0 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.22 gi|55378251|ref|YP_136101.1| - 0.0032 17.8 0.0 0.36 11.2 0.0 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|55378251|ref|YP_136101.1| - 0.0034 16.5 0.0 0.0051 15.9 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|55378251|ref|YP_136101.1| - 0.013 15.1 0.1 0.023 14.3 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|55378251|ref|YP_136101.1| - 0.065 12.7 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Cytomega_UL20A PF05984.7 gi|55378251|ref|YP_136101.1| - 0.066 13.4 1.2 0.13 12.4 0.5 1.8 1 1 0 1 1 1 0 Cytomegalovirus UL20A protein DoxX PF07681.7 gi|55378252|ref|YP_136102.1| - 7.1e-11 42.3 11.1 7.1e-11 42.3 7.7 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|55378252|ref|YP_136102.1| - 6.8e-05 22.7 0.6 0.0035 17.1 0.0 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.10 gi|55378252|ref|YP_136102.1| - 0.00011 21.7 0.6 0.00033 20.1 0.4 1.8 1 1 0 1 1 1 1 SURF4 family DoxX_2 PF13564.1 gi|55378252|ref|YP_136102.1| - 0.02 14.8 13.1 0.022 14.7 8.2 1.7 1 1 1 2 2 2 0 DoxX-like family Sec62 PF03839.11 gi|55378252|ref|YP_136102.1| - 0.18 11.1 0.1 0.26 10.6 0.1 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 DUF3042 PF11240.3 gi|55378252|ref|YP_136102.1| - 4.9 7.0 5.1 7.2 6.5 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) Neurensin PF14927.1 gi|55378252|ref|YP_136102.1| - 8 5.8 6.4 32 3.9 2.9 2.7 2 1 0 2 2 2 0 Neurensin TetR_N PF00440.18 gi|55378253|ref|YP_136103.1| - 3.4e-10 39.4 0.0 6.5e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|55378253|ref|YP_136103.1| - 6.7e-09 35.7 0.1 1.2e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_9 PF14514.1 gi|55378253|ref|YP_136103.1| - 0.032 14.0 0.1 0.074 12.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator, TetR, C-terminal DUF2433 PF10360.4 gi|55378253|ref|YP_136103.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2433) DUF4010 PF13194.1 gi|55378254|ref|YP_136104.1| - 0.057 12.7 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) AAA_assoc_C PF09821.4 gi|55378256|ref|YP_136106.1| - 0.056 13.7 0.1 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain Mrr_cat PF04471.7 gi|55378256|ref|YP_136106.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease SQS_PSY PF00494.14 gi|55378258|ref|YP_136108.1| - 8.3e-48 162.9 0.2 1e-47 162.6 0.1 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Glyco_hydro_68 PF02435.11 gi|55378259|ref|YP_136109.1| - 2.5e-76 257.1 0.0 8.2e-75 252.1 0.0 2.4 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.9 gi|55378259|ref|YP_136109.1| - 8.6e-09 34.8 0.0 3.1e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 BNR_2 PF13088.1 gi|55378259|ref|YP_136109.1| - 0.00081 18.7 0.0 0.39 9.9 0.0 2.6 1 1 2 3 3 3 2 BNR repeat-like domain Glyco_hydro_32N PF00251.15 gi|55378260|ref|YP_136110.1| - 2.5e-78 263.5 0.0 3.2e-78 263.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|55378260|ref|YP_136110.1| - 7.1e-15 55.1 0.1 1.3e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4159 PF13709.1 gi|55378260|ref|YP_136110.1| - 0.026 13.6 0.0 0.31 10.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) T2SK PF03934.8 gi|55378260|ref|YP_136110.1| - 0.066 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K MreB_Mbl PF06723.8 gi|55378262|ref|YP_136112.1| - 4.8e-06 25.3 0.1 1.1e-05 24.2 0.1 1.7 1 1 0 1 1 1 1 MreB/Mbl protein DNA_gyraseB PF00204.20 gi|55378262|ref|YP_136112.1| - 0.051 12.7 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA gyrase B Arch_fla_DE PF04659.8 gi|55378263|ref|YP_136113.1| - 2.1e-31 107.6 0.3 2.7e-31 107.3 0.2 1.1 1 0 0 1 1 1 1 Archaeal flagella protein CbiA PF01656.18 gi|55378264|ref|YP_136114.1| - 4.1e-29 101.3 0.1 5.8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|55378264|ref|YP_136114.1| - 3.9e-11 42.5 0.5 9.4e-07 28.1 0.0 2.4 2 1 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|55378264|ref|YP_136114.1| - 3.1e-09 36.9 0.0 4.1e-05 23.5 0.0 2.8 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|55378264|ref|YP_136114.1| - 3.1e-07 29.8 0.0 0.0033 16.6 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|55378264|ref|YP_136114.1| - 5.1e-06 25.7 0.4 0.0004 19.5 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|55378264|ref|YP_136114.1| - 0.00026 20.4 0.1 0.073 12.4 0.0 2.3 2 0 0 2 2 2 2 YhjQ protein AAA_19 PF13245.1 gi|55378264|ref|YP_136114.1| - 0.00058 19.5 0.4 0.0022 17.7 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain ATP_bind_1 PF03029.12 gi|55378264|ref|YP_136114.1| - 0.0018 17.8 0.5 0.76 9.2 0.0 2.5 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|55378264|ref|YP_136114.1| - 0.032 13.6 0.8 0.14 11.5 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55378264|ref|YP_136114.1| - 0.043 13.3 0.0 0.083 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ParA PF10609.4 gi|55378264|ref|YP_136114.1| - 0.048 13.5 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 ParA/MinD ATPase like LpxK PF02606.9 gi|55378264|ref|YP_136114.1| - 0.054 12.4 0.0 0.089 11.7 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Popeye PF04831.8 gi|55378264|ref|YP_136114.1| - 0.084 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Popeye protein conserved region DUF4535 PF15054.1 gi|55378264|ref|YP_136114.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) VirC1 PF07015.6 gi|55378264|ref|YP_136114.1| - 0.12 11.3 4.1 2.6 7.0 2.9 2.5 1 1 0 1 1 1 0 VirC1 protein CheW PF01584.14 gi|55378265|ref|YP_136115.1| - 7.5e-22 77.2 0.4 1.2e-21 76.6 0.3 1.3 1 0 0 1 1 1 1 CheW-like domain SAPS PF04499.10 gi|55378265|ref|YP_136115.1| - 1.6 7.2 3.2 1.8 7.1 2.2 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Pyr_redox PF00070.22 gi|55378266|ref|YP_136116.1| - 3.9e-12 46.3 6.1 4.3e-09 36.6 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|55378266|ref|YP_136116.1| - 2.6e-09 37.2 0.8 1.6e-08 34.6 0.6 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55378266|ref|YP_136116.1| - 3.9e-06 26.0 4.8 0.51 9.1 0.3 3.3 2 1 1 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|55378266|ref|YP_136116.1| - 2.1e-05 24.6 0.2 0.1 12.6 0.0 2.6 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|55378266|ref|YP_136116.1| - 7.5e-05 22.5 2.8 0.78 9.5 0.0 3.8 2 2 2 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|55378266|ref|YP_136116.1| - 0.00054 18.9 1.0 0.5 9.2 0.0 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|55378266|ref|YP_136116.1| - 0.0011 18.8 6.4 0.24 11.4 0.0 2.9 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|55378266|ref|YP_136116.1| - 0.0031 17.4 1.0 0.55 10.2 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain DUF4147 PF13660.1 gi|55378266|ref|YP_136116.1| - 0.0033 16.5 0.1 0.078 12.0 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) UDPG_MGDP_dh_N PF03721.9 gi|55378266|ref|YP_136116.1| - 0.0034 16.7 0.7 0.032 13.6 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|55378266|ref|YP_136116.1| - 0.0089 15.1 0.2 0.88 8.6 0.0 2.4 2 0 0 2 2 2 1 Thi4 family Semialdhyde_dh PF01118.19 gi|55378266|ref|YP_136116.1| - 0.013 15.7 1.8 0.15 12.4 0.0 2.7 2 1 1 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|55378266|ref|YP_136116.1| - 0.014 15.1 0.0 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DapB_N PF01113.15 gi|55378266|ref|YP_136116.1| - 0.015 15.1 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus K_oxygenase PF13434.1 gi|55378266|ref|YP_136116.1| - 0.16 10.8 0.0 0.87 8.4 0.0 1.9 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) PAS PF00989.19 gi|55378267|ref|YP_136117.1| - 5.4e-17 61.6 0.2 2e-16 59.7 0.0 2.1 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.21 gi|55378267|ref|YP_136117.1| - 1.6e-13 50.3 0.0 3.6e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|55378267|ref|YP_136117.1| - 4.9e-12 46.1 0.0 1.3e-11 44.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|55378267|ref|YP_136117.1| - 4.2e-11 42.8 0.4 1.1e-10 41.5 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|55378267|ref|YP_136117.1| - 7e-08 32.0 0.0 2.8e-07 30.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|55378267|ref|YP_136117.1| - 2.7e-06 27.1 0.0 7e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|55378267|ref|YP_136117.1| - 0.00015 21.7 0.0 0.00064 19.7 0.0 2.2 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|55378267|ref|YP_136117.1| - 0.00046 20.1 1.7 0.00046 20.1 1.2 2.5 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|55378267|ref|YP_136117.1| - 0.0073 15.8 0.7 0.016 14.7 0.5 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.1 gi|55378267|ref|YP_136117.1| - 0.012 15.8 0.0 0.036 14.3 0.0 1.9 1 1 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|55378267|ref|YP_136117.1| - 0.039 13.5 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TFCD_C PF12612.3 gi|55378267|ref|YP_136117.1| - 0.063 12.6 0.6 0.12 11.7 0.1 1.7 2 0 0 2 2 2 0 Tubulin folding cofactor D C terminal Misat_Tub_SegII PF10644.4 gi|55378267|ref|YP_136117.1| - 0.074 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Misato Segment II tubulin-like domain GHMP_kinases_N PF00288.21 gi|55378268|ref|YP_136118.1| - 8.5e-07 28.9 1.7 4.1e-06 26.7 1.3 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain Methyltransf_24 PF13578.1 gi|55378268|ref|YP_136118.1| - 0.042 14.6 2.0 4.8 8.0 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain Cob_adeno_trans PF01923.13 gi|55378269|ref|YP_136119.1| - 4.5e-58 195.6 0.0 5e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PMSR PF01625.16 gi|55378270|ref|YP_136120.1| - 1.1e-43 148.8 0.0 1.4e-43 148.4 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase zf-H2C2_2 PF13465.1 gi|55378271|ref|YP_136121.1| - 0.0022 18.2 4.8 0.019 15.2 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain DNA_ligase_ZBD PF03119.11 gi|55378271|ref|YP_136121.1| - 0.0036 16.9 4.3 0.033 13.8 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.8 gi|55378271|ref|YP_136121.1| - 0.01 15.2 0.9 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-DNA_Pol PF08996.5 gi|55378271|ref|YP_136121.1| - 0.015 14.6 0.1 0.017 14.4 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-RING_3 PF14369.1 gi|55378271|ref|YP_136121.1| - 0.017 15.0 4.6 0.055 13.4 0.1 2.2 1 1 1 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|55378271|ref|YP_136121.1| - 0.031 13.5 0.6 3.7 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PHD PF00628.24 gi|55378271|ref|YP_136121.1| - 0.035 13.8 1.5 0.96 9.1 0.1 2.1 2 0 0 2 2 2 0 PHD-finger zf-ISL3 PF14690.1 gi|55378271|ref|YP_136121.1| - 0.045 13.7 2.6 3.6 7.7 0.3 2.1 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.4 gi|55378271|ref|YP_136121.1| - 0.067 13.0 0.4 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Lar_restr_allev PF14354.1 gi|55378271|ref|YP_136121.1| - 0.071 13.4 0.5 0.086 13.1 0.4 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Opy2 PF09463.5 gi|55378271|ref|YP_136121.1| - 0.076 13.1 0.8 8.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein Zn_Tnp_IS1595 PF12760.2 gi|55378271|ref|YP_136121.1| - 0.091 12.5 1.7 0.12 12.2 1.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|55378271|ref|YP_136121.1| - 0.094 12.5 0.9 4.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1272 PF06906.6 gi|55378271|ref|YP_136121.1| - 0.11 12.3 0.3 9.6 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DZR PF12773.2 gi|55378271|ref|YP_136121.1| - 0.11 12.2 1.6 0.5 10.2 1.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|55378271|ref|YP_136121.1| - 0.19 11.5 6.4 0.36 10.7 0.7 2.2 1 1 1 2 2 2 0 Rubredoxin RNHCP PF12647.2 gi|55378271|ref|YP_136121.1| - 0.25 11.2 1.8 2.7 7.8 1.2 1.9 1 1 1 2 2 2 0 RNHCP domain DUF2296 PF10058.4 gi|55378271|ref|YP_136121.1| - 0.29 10.9 1.4 6 6.6 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zinc-ribbons_6 PF07191.7 gi|55378271|ref|YP_136121.1| - 0.5 10.1 2.1 5.1 6.9 1.6 2.0 1 1 1 2 2 2 0 zinc-ribbons UPF0547 PF10571.4 gi|55378271|ref|YP_136121.1| - 0.85 9.3 7.6 2.6 7.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_jaz PF12171.3 gi|55378271|ref|YP_136121.1| - 1.4 9.1 3.7 23 5.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding zf-MIZ PF02891.15 gi|55378271|ref|YP_136121.1| - 1.6 8.3 6.0 6.9 6.2 4.2 1.9 1 1 0 1 1 1 0 MIZ/SP-RING zinc finger DUF4379 PF14311.1 gi|55378271|ref|YP_136121.1| - 3.6 7.4 7.0 10 6.0 4.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Response_reg PF00072.19 gi|55378273|ref|YP_136123.1| - 3e-19 69.0 0.1 3.5e-19 68.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|55378273|ref|YP_136123.1| - 0.06 13.4 0.0 0.082 12.9 0.0 1.3 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain B12-binding PF02310.14 gi|55378273|ref|YP_136123.1| - 0.11 12.4 0.1 0.32 10.8 0.0 1.7 1 1 1 2 2 2 0 B12 binding domain PAS_9 PF13426.1 gi|55378274|ref|YP_136124.1| - 2.3e-56 188.5 2.8 6.7e-13 48.9 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|55378274|ref|YP_136124.1| - 4.7e-44 148.7 3.8 7e-11 41.9 0.0 6.4 6 0 0 6 6 6 5 PAS fold PAS_4 PF08448.5 gi|55378274|ref|YP_136124.1| - 2.9e-37 127.0 20.2 3.6e-07 30.2 0.0 6.5 7 0 0 7 7 6 5 PAS fold PAS_8 PF13188.1 gi|55378274|ref|YP_136124.1| - 1.1e-27 94.9 2.4 8e-07 28.7 0.0 5.2 5 0 0 5 5 4 4 PAS domain PAS_3 PF08447.6 gi|55378274|ref|YP_136124.1| - 2.4e-23 82.0 0.2 2.9e-12 46.5 0.0 5.0 5 0 0 5 5 5 3 PAS fold HATPase_c PF02518.21 gi|55378274|ref|YP_136124.1| - 2.1e-18 66.0 0.2 4.7e-18 64.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|55378274|ref|YP_136124.1| - 2.8e-18 66.2 0.5 1.7e-11 44.3 0.0 3.7 3 0 0 3 3 3 2 GAF domain GAF_2 PF13185.1 gi|55378274|ref|YP_136124.1| - 4.7e-14 53.1 2.2 2e-11 44.5 0.1 3.3 3 0 0 3 3 3 1 GAF domain Response_reg PF00072.19 gi|55378274|ref|YP_136124.1| - 2.7e-08 33.8 0.0 6.9e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55378274|ref|YP_136124.1| - 2e-06 27.7 4.4 1.4e-05 24.9 3.0 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|55378274|ref|YP_136124.1| - 2.2e-06 27.6 5.8 0.57 10.2 0.0 6.4 7 0 0 7 7 7 2 PAS fold HATPase_c_2 PF13581.1 gi|55378274|ref|YP_136124.1| - 2.3e-06 27.4 0.4 8.7e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55378274|ref|YP_136124.1| - 0.0019 17.8 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_2 PF07568.7 gi|55378274|ref|YP_136124.1| - 0.076 12.8 0.2 0.23 11.3 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase HATPase_c_5 PF14501.1 gi|55378274|ref|YP_136124.1| - 0.28 10.9 0.0 0.71 9.6 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Aminotran_5 PF00266.14 gi|55378275|ref|YP_136125.1| - 1.4e-08 33.8 0.0 2.2e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|55378275|ref|YP_136125.1| - 4e-07 29.0 0.0 5.9e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|55378275|ref|YP_136125.1| - 0.00067 18.8 0.1 0.001 18.2 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|55378276|ref|YP_136126.1| - 4.9e-111 371.4 0.0 5.7e-111 371.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|55378276|ref|YP_136126.1| - 9.3e-06 24.1 0.0 1.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GCV_H PF01597.14 gi|55378277|ref|YP_136127.1| - 1.8e-44 150.3 0.0 1.9e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|55378277|ref|YP_136127.1| - 0.0087 15.6 0.2 0.021 14.4 0.0 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|55378277|ref|YP_136127.1| - 0.013 15.2 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF2460 PF09343.5 gi|55378277|ref|YP_136127.1| - 0.14 11.4 0.1 0.22 10.8 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) GCV_T PF01571.16 gi|229269505|ref|YP_136128.2| - 5.1e-62 208.9 0.0 6.4e-62 208.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|229269505|ref|YP_136128.2| - 9.8e-22 76.7 0.0 1.7e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|229269505|ref|YP_136128.2| - 0.00038 20.3 0.0 0.0052 16.6 0.0 2.0 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.4 gi|229269505|ref|YP_136128.2| - 0.02 14.8 0.0 0.068 13.1 0.0 1.8 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus PAS_4 PF08448.5 gi|55378279|ref|YP_136129.1| - 5.5e-31 106.8 6.2 3.3e-14 52.8 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|55378279|ref|YP_136129.1| - 3.7e-25 88.3 0.5 2.9e-10 40.4 0.0 3.6 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|55378279|ref|YP_136129.1| - 1.1e-23 83.2 0.1 1.4e-12 47.4 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|55378279|ref|YP_136129.1| - 8.9e-15 54.5 0.4 2.8e-07 30.5 0.0 3.6 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|55378279|ref|YP_136129.1| - 5.1e-09 35.8 0.0 9.9e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55378279|ref|YP_136129.1| - 3e-07 30.0 0.1 2.1e-06 27.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|55378279|ref|YP_136129.1| - 0.00078 19.3 4.0 0.0013 18.6 0.2 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|55378279|ref|YP_136129.1| - 0.0013 18.7 0.7 0.11 12.5 0.0 3.2 3 1 0 3 3 3 1 PAS fold NYN PF01936.13 gi|55378280|ref|YP_136130.1| - 4.1e-19 69.3 0.1 4.6e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.1 gi|55378280|ref|YP_136130.1| - 4.8e-05 22.8 0.8 6e-05 22.5 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain CoA_binding_2 PF13380.1 gi|55378280|ref|YP_136130.1| - 0.033 14.3 0.8 0.089 12.9 0.3 1.7 1 1 1 2 2 2 0 CoA binding domain AP_endonuc_2 PF01261.19 gi|55378280|ref|YP_136130.1| - 0.034 13.4 0.5 0.13 11.5 0.3 1.9 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel TatD_DNase PF01026.16 gi|55378282|ref|YP_136132.1| - 3.7e-11 42.7 0.0 1.1e-08 34.6 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase ABC_tran PF00005.22 gi|55378283|ref|YP_136133.1| - 2.3e-30 105.6 0.0 3.9e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378283|ref|YP_136133.1| - 2e-13 50.9 0.0 9.2e-11 42.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55378283|ref|YP_136133.1| - 6.1e-09 35.4 0.3 6.6e-08 32.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|55378283|ref|YP_136133.1| - 6e-05 22.2 0.0 0.061 12.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|55378283|ref|YP_136133.1| - 0.00011 22.5 0.0 0.0015 18.9 0.0 2.3 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55378283|ref|YP_136133.1| - 0.0002 21.4 0.0 0.00053 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55378283|ref|YP_136133.1| - 0.0007 18.8 0.0 0.0013 17.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|55378283|ref|YP_136133.1| - 0.0016 17.9 0.0 0.0043 16.5 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55378283|ref|YP_136133.1| - 0.0018 18.2 1.2 0.0097 15.9 0.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|55378283|ref|YP_136133.1| - 0.0034 17.2 0.0 0.0049 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain DeoRC PF00455.17 gi|55378283|ref|YP_136133.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_25 PF13481.1 gi|55378283|ref|YP_136133.1| - 0.018 14.4 0.4 0.094 12.1 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55378283|ref|YP_136133.1| - 0.019 14.3 0.3 0.12 11.7 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|55378283|ref|YP_136133.1| - 0.031 12.8 0.1 4.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|55378283|ref|YP_136133.1| - 0.034 12.8 0.0 0.052 12.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mg_chelatase PF01078.16 gi|55378283|ref|YP_136133.1| - 0.042 12.9 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|55378283|ref|YP_136133.1| - 0.083 13.7 0.8 0.32 11.8 0.6 2.2 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|55378283|ref|YP_136133.1| - 0.083 11.5 0.0 0.52 8.9 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_19 PF13245.1 gi|55378283|ref|YP_136133.1| - 0.088 12.5 0.0 17 5.2 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|55378283|ref|YP_136133.1| - 0.12 12.0 0.1 1.3 8.6 0.0 2.1 2 1 0 2 2 2 0 Archaeal ATPase BPD_transp_1 PF00528.17 gi|55378284|ref|YP_136134.1| - 2.8e-21 75.8 13.6 2.8e-21 75.8 9.4 5.0 1 1 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55378285|ref|YP_136135.1| - 1.4e-15 57.3 18.2 1.4e-15 57.3 12.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|55378286|ref|YP_136136.1| - 3.7e-33 115.1 1.1 7.9e-33 114.1 0.8 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|55378286|ref|YP_136136.1| - 1.8e-17 62.9 0.0 3.8e-17 61.8 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|55378286|ref|YP_136136.1| - 0.0013 18.5 0.1 0.39 10.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55378286|ref|YP_136136.1| - 0.013 15.3 0.8 0.025 14.5 0.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|55378286|ref|YP_136136.1| - 0.029 13.9 0.0 0.69 9.4 0.0 2.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein RecT PF03837.9 gi|55378286|ref|YP_136136.1| - 0.058 12.6 2.1 0.55 9.4 0.5 2.2 2 0 0 2 2 2 0 RecT family PhoU PF01895.14 gi|55378287|ref|YP_136137.1| - 5.6e-25 87.5 4.6 1.8e-17 63.5 0.3 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|55378287|ref|YP_136137.1| - 1.7e-08 34.0 0.0 3.4e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF948 PF06103.6 gi|55378287|ref|YP_136137.1| - 0.0022 17.8 2.0 5 7.0 0.1 3.6 4 0 0 4 4 4 1 Bacterial protein of unknown function (DUF948) ISG65-75 PF11727.3 gi|55378287|ref|YP_136137.1| - 0.019 14.0 0.1 0.03 13.4 0.1 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein HisKA_3 PF07730.8 gi|55378287|ref|YP_136137.1| - 8 6.8 9.3 25 5.2 0.1 3.7 2 2 1 4 4 4 0 Histidine kinase Ribosomal_S8e PF01201.17 gi|55378288|ref|YP_136138.1| - 1.7e-33 115.5 6.0 1.8e-33 115.4 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.4 gi|55378289|ref|YP_136139.1| - 5e-54 181.6 0.5 5.6e-54 181.4 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF373 PF04123.8 gi|55378291|ref|YP_136141.1| - 0.11 11.5 7.9 0.68 8.8 5.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF373) OMPdecase PF00215.19 gi|55378292|ref|YP_136142.1| - 6.4e-35 120.5 0.0 7.5e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|55378292|ref|YP_136142.1| - 0.075 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) GATase PF00117.23 gi|55378294|ref|YP_136144.1| - 6.4e-45 152.9 0.0 7.2e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55378294|ref|YP_136144.1| - 2.4e-08 33.7 0.1 1e-07 31.6 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|55378295|ref|YP_136145.1| - 2.7e-91 305.4 0.0 6.4e-91 304.2 0.0 1.6 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|55378295|ref|YP_136145.1| - 3.1e-21 75.8 0.2 3.4e-20 72.4 0.1 2.4 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|55378296|ref|YP_136146.1| - 6.7e-35 120.4 0.2 7.6e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|55378296|ref|YP_136146.1| - 0.0021 17.2 2.6 0.0056 15.8 1.9 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|55378296|ref|YP_136146.1| - 0.004 16.2 0.6 0.0078 15.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|55378296|ref|YP_136146.1| - 0.022 14.0 0.5 0.065 12.4 0.1 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein G3P_antiterm PF04309.7 gi|55378296|ref|YP_136146.1| - 0.025 13.6 1.2 0.12 11.4 0.0 2.4 2 1 1 3 3 3 0 Glycerol-3-phosphate responsive antiterminator DUF1729 PF08354.5 gi|55378296|ref|YP_136146.1| - 0.75 9.6 2.8 0.66 9.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1729) Glycos_transf_3 PF00591.16 gi|55378297|ref|YP_136147.1| - 5.8e-102 340.4 1.7 7.5e-102 340.0 1.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|55378297|ref|YP_136147.1| - 4.8e-19 67.6 2.8 1.1e-18 66.5 2.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|55378297|ref|YP_136147.1| - 0.009 15.4 0.0 0.026 14.0 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) PadR PF03551.9 gi|55378298|ref|YP_136148.1| - 0.00088 18.9 0.1 0.0098 15.6 0.1 2.1 1 1 1 2 2 2 2 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55378298|ref|YP_136148.1| - 0.098 12.9 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|55378298|ref|YP_136148.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|55378298|ref|YP_136148.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.6 1 1 0 1 1 1 0 CDC6, C terminal CBS PF00571.23 gi|55378301|ref|YP_136151.1| - 3.9e-46 154.5 15.7 2.6e-15 55.9 2.1 4.4 4 0 0 4 4 4 4 CBS domain DUF3010 PF11215.3 gi|55378301|ref|YP_136151.1| - 0.0051 16.7 0.2 0.02 14.8 0.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3010) Ribosomal_S30AE PF02482.14 gi|55378301|ref|YP_136151.1| - 0.016 15.6 1.0 0.036 14.5 0.1 2.1 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L9_C PF03948.9 gi|55378301|ref|YP_136151.1| - 0.031 14.3 0.0 7.3 6.7 0.0 3.3 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain ADH_zinc_N PF00107.21 gi|55378302|ref|YP_136152.1| - 4.4e-18 65.0 0.0 6.6e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55378302|ref|YP_136152.1| - 4.4e-08 34.0 0.0 9.4e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Epimerase PF01370.16 gi|55378302|ref|YP_136152.1| - 0.065 12.6 0.1 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ELFV_dehydrog PF00208.16 gi|55378302|ref|YP_136152.1| - 0.067 12.7 0.2 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase adh_short PF00106.20 gi|55378302|ref|YP_136152.1| - 0.07 13.0 0.8 0.2 11.5 0.2 2.0 2 0 0 2 2 2 0 short chain dehydrogenase AAA PF00004.24 gi|55378303|ref|YP_136153.1| - 3.2e-100 331.5 0.0 1.4e-49 167.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|55378303|ref|YP_136153.1| - 1.4e-29 101.8 0.0 9.8e-29 99.1 0.0 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|55378303|ref|YP_136153.1| - 1.4e-15 56.6 0.0 6.6e-15 54.5 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|55378303|ref|YP_136153.1| - 8.1e-15 54.4 0.1 6.3e-07 28.6 0.0 2.5 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|55378303|ref|YP_136153.1| - 2.3e-14 53.8 0.0 4.9e-07 29.9 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|55378303|ref|YP_136153.1| - 3.2e-13 49.9 0.3 0.00048 20.2 0.1 4.3 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|55378303|ref|YP_136153.1| - 3.8e-13 49.3 1.9 5.5e-05 22.9 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|55378303|ref|YP_136153.1| - 4.1e-13 49.5 0.0 1.2e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|55378303|ref|YP_136153.1| - 6.6e-12 46.3 0.0 0.00015 22.5 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|55378303|ref|YP_136153.1| - 3e-11 43.3 0.0 3.1e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|55378303|ref|YP_136153.1| - 1.2e-10 40.7 0.0 0.00028 19.7 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|55378303|ref|YP_136153.1| - 3.6e-09 36.2 1.6 0.0012 18.5 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|55378303|ref|YP_136153.1| - 7.1e-09 35.6 0.0 0.0019 18.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|55378303|ref|YP_136153.1| - 3.1e-08 33.2 0.0 0.0057 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|55378303|ref|YP_136153.1| - 2e-07 31.3 0.0 0.0072 16.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|55378303|ref|YP_136153.1| - 3.7e-07 29.4 0.0 0.036 13.1 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|55378303|ref|YP_136153.1| - 9.7e-07 28.1 0.1 0.043 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|55378303|ref|YP_136153.1| - 1.2e-06 28.6 0.0 0.049 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|55378303|ref|YP_136153.1| - 1.8e-06 27.4 11.5 0.41 10.0 0.1 4.6 3 2 2 5 5 4 2 AAA domain AAA_28 PF13521.1 gi|55378303|ref|YP_136153.1| - 1.9e-06 27.9 0.0 0.015 15.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|55378303|ref|YP_136153.1| - 2.1e-06 27.3 0.1 0.11 12.0 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|55378303|ref|YP_136153.1| - 2.6e-06 27.3 0.0 0.065 12.9 0.0 3.8 2 2 1 3 3 3 1 Archaeal ATPase PhoH PF02562.11 gi|55378303|ref|YP_136153.1| - 3.6e-06 26.3 0.6 0.16 11.1 0.0 3.5 3 0 0 3 3 3 2 PhoH-like protein AAA_3 PF07726.6 gi|55378303|ref|YP_136153.1| - 4.7e-06 26.2 0.0 0.075 12.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|55378303|ref|YP_136153.1| - 1.6e-05 23.9 0.0 0.036 12.9 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|55378303|ref|YP_136153.1| - 3.1e-05 24.0 0.0 0.28 11.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|55378303|ref|YP_136153.1| - 3.6e-05 23.4 1.2 0.061 12.8 0.0 2.7 3 0 0 3 3 2 2 AAA domain KaiC PF06745.8 gi|55378303|ref|YP_136153.1| - 4e-05 22.8 2.9 0.41 9.7 0.0 3.7 3 1 1 4 4 4 2 KaiC ABC_tran PF00005.22 gi|55378303|ref|YP_136153.1| - 4.1e-05 23.9 0.0 0.4 10.9 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.8 gi|55378303|ref|YP_136153.1| - 6.4e-05 22.0 0.0 0.2 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|55378303|ref|YP_136153.1| - 6.6e-05 22.6 0.2 0.26 10.9 0.0 3.6 4 0 0 4 4 4 1 NACHT domain AAA_30 PF13604.1 gi|55378303|ref|YP_136153.1| - 0.00011 21.8 0.4 0.55 9.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.4 gi|55378303|ref|YP_136153.1| - 0.00025 20.1 0.0 0.27 10.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|55378303|ref|YP_136153.1| - 0.00026 19.9 0.1 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|55378303|ref|YP_136153.1| - 0.0004 20.0 0.0 0.51 9.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|55378303|ref|YP_136153.1| - 0.0006 19.5 0.3 2 8.0 0.0 3.3 2 1 0 3 3 3 2 NTPase SKI PF01202.17 gi|55378303|ref|YP_136153.1| - 0.00061 19.6 0.0 0.37 10.6 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase IPT PF01745.11 gi|55378303|ref|YP_136153.1| - 0.0017 17.5 0.8 0.56 9.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|55378303|ref|YP_136153.1| - 0.0017 17.9 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|55378303|ref|YP_136153.1| - 0.0023 17.0 0.0 2.5 6.9 0.0 3.1 2 2 0 3 3 3 1 KAP family P-loop domain Bac_DnaA PF00308.13 gi|55378303|ref|YP_136153.1| - 0.0036 16.9 0.0 3.6 7.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein ResIII PF04851.10 gi|55378303|ref|YP_136153.1| - 0.0047 16.7 0.0 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|55378303|ref|YP_136153.1| - 0.015 14.8 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CPT PF07931.7 gi|55378303|ref|YP_136153.1| - 0.019 14.5 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.11 gi|55378303|ref|YP_136153.1| - 0.031 13.0 0.0 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|55378303|ref|YP_136153.1| - 0.044 12.9 0.0 11 5.0 0.0 2.7 3 0 0 3 3 2 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|55378303|ref|YP_136153.1| - 0.049 12.5 0.0 7.5 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin2 PF13189.1 gi|55378303|ref|YP_136153.1| - 0.053 13.4 0.2 1.8 8.4 0.0 2.5 3 0 0 3 3 2 0 Cytidylate kinase-like family Torsin PF06309.6 gi|55378303|ref|YP_136153.1| - 0.061 13.2 0.0 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Torsin Guanylate_kin PF00625.16 gi|55378303|ref|YP_136153.1| - 0.1 12.0 0.4 39 3.6 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase MSV199 PF10553.4 gi|55378303|ref|YP_136153.1| - 0.14 12.0 0.1 0.69 9.7 0.0 2.0 2 0 0 2 2 2 0 MSV199 domain Usp PF00582.21 gi|55378304|ref|YP_136154.1| - 1.1e-07 32.1 1.5 1.6e-07 31.5 1.1 1.3 1 1 0 1 1 1 1 Universal stress protein family Glyco_hydro_3_C PF01915.17 gi|55378304|ref|YP_136154.1| - 0.38 10.2 3.4 1 8.8 2.4 1.7 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DUF111 PF01969.12 gi|55378305|ref|YP_136155.1| - 2e-137 458.0 1.0 2.4e-137 457.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF348 PF03990.9 gi|55378306|ref|YP_136156.1| - 0.0009 18.7 0.0 0.59 9.7 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF348) bPH_6 PF10756.4 gi|55378307|ref|YP_136157.1| - 0.002 17.9 0.6 0.002 17.9 0.4 1.8 2 0 0 2 2 2 1 Bacterial PH domain Rad51 PF08423.6 gi|55378308|ref|YP_136158.1| - 1e-15 57.3 0.1 1.2e-15 57.0 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|55378308|ref|YP_136158.1| - 1.8e-06 27.5 1.8 2.4e-06 27.0 1.2 1.1 1 0 0 1 1 1 1 AAA domain Isochorismatase PF00857.15 gi|55378308|ref|YP_136158.1| - 0.033 14.1 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Isochorismatase family PhoU PF01895.14 gi|55378309|ref|YP_136159.1| - 3e-33 114.1 16.0 2.5e-19 69.4 0.9 2.2 2 0 0 2 2 2 2 PhoU domain Trigger_N PF05697.8 gi|55378309|ref|YP_136159.1| - 0.048 13.4 0.1 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) ATP-synt_D PF01813.12 gi|55378309|ref|YP_136159.1| - 0.06 12.9 1.2 3.3 7.2 0.1 2.2 1 1 0 2 2 2 0 ATP synthase subunit D TrkA_N PF02254.13 gi|55378311|ref|YP_136161.1| - 1.4e-51 173.4 12.1 1.3e-25 89.6 0.3 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|55378311|ref|YP_136161.1| - 9.1e-32 108.4 10.6 2.6e-16 58.9 0.6 3.7 3 1 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|55378311|ref|YP_136161.1| - 1.1e-10 41.6 2.5 0.00022 21.4 0.1 2.7 3 0 0 3 3 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|55378311|ref|YP_136161.1| - 2.2e-09 37.5 1.0 0.00017 21.6 0.1 2.6 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|55378311|ref|YP_136161.1| - 2.3e-06 26.8 0.5 0.00058 19.0 0.0 2.8 3 0 0 3 3 3 1 FAD binding domain CPSase_L_chain PF00289.17 gi|55378311|ref|YP_136161.1| - 4.4e-06 26.7 2.1 1.1 9.3 0.0 3.4 3 0 0 3 3 3 3 Carbamoyl-phosphate synthase L chain, N-terminal domain F420_oxidored PF03807.12 gi|55378311|ref|YP_136161.1| - 9e-06 26.0 0.2 0.016 15.6 0.1 3.5 2 2 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|55378311|ref|YP_136161.1| - 1.4e-05 24.5 0.1 0.0002 20.7 0.1 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|55378311|ref|YP_136161.1| - 1.7e-05 24.5 0.5 0.0014 18.3 0.1 2.6 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|55378311|ref|YP_136161.1| - 3e-05 23.1 2.9 0.0013 17.8 0.3 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase ADH_zinc_N PF00107.21 gi|55378311|ref|YP_136161.1| - 5e-05 22.8 0.2 5e-05 22.8 0.1 3.5 3 1 1 4 4 4 1 Zinc-binding dehydrogenase ThiF PF00899.16 gi|55378311|ref|YP_136161.1| - 5.1e-05 23.1 5.1 0.0037 17.0 0.0 3.6 3 1 1 4 4 3 1 ThiF family Pyr_redox PF00070.22 gi|55378311|ref|YP_136161.1| - 5.3e-05 23.5 0.3 0.48 10.8 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|55378311|ref|YP_136161.1| - 0.00011 22.4 0.8 0.077 13.2 0.1 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain GFO_IDH_MocA PF01408.17 gi|55378311|ref|YP_136161.1| - 0.00025 21.5 1.4 0.02 15.4 0.1 3.0 3 1 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.9 gi|55378311|ref|YP_136161.1| - 0.00041 20.3 0.2 0.94 9.3 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|55378311|ref|YP_136161.1| - 0.00064 19.5 0.2 0.044 13.6 0.0 2.7 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|55378311|ref|YP_136161.1| - 0.0012 18.5 0.0 0.15 11.8 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.6 gi|55378311|ref|YP_136161.1| - 0.002 17.2 0.1 0.0048 16.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) DAO PF01266.19 gi|55378311|ref|YP_136161.1| - 0.0023 16.8 1.3 0.45 9.3 0.1 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase Oxidored_nitro PF00148.14 gi|55378311|ref|YP_136161.1| - 0.0032 16.1 0.6 0.0094 14.6 0.0 2.0 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.11 gi|55378311|ref|YP_136161.1| - 0.0033 16.8 0.1 0.026 13.9 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|55378311|ref|YP_136161.1| - 0.0039 16.3 0.1 0.6 9.2 0.1 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEM4 PF02602.10 gi|55378311|ref|YP_136161.1| - 0.0041 16.3 0.0 0.018 14.2 0.0 2.0 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.12 gi|55378311|ref|YP_136161.1| - 0.007 16.4 0.9 9.3 6.4 0.0 3.7 4 0 0 4 4 3 0 Dinitrogenase iron-molybdenum cofactor AdoHcyase_NAD PF00670.16 gi|55378311|ref|YP_136161.1| - 0.0071 16.2 1.1 0.29 10.9 1.2 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_8 PF13450.1 gi|55378311|ref|YP_136161.1| - 0.084 12.9 0.1 5 7.2 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain YflT PF11181.3 gi|55378311|ref|YP_136161.1| - 0.1 12.7 1.5 0.42 10.7 0.1 2.6 2 1 1 3 3 3 0 Heat induced stress protein YflT HAS-barrel PF09378.5 gi|55378311|ref|YP_136161.1| - 0.79 9.6 5.7 21 5.1 0.1 3.3 2 1 0 2 2 2 0 HAS barrel domain UvrB PF12344.3 gi|55378312|ref|YP_136162.1| - 0.13 11.8 0.4 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 Ultra-violet resistance protein B HTH_24 PF13412.1 gi|55378315|ref|YP_136165.1| - 0.00053 19.3 0.0 0.0012 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|55378315|ref|YP_136165.1| - 0.001 18.5 0.0 0.0029 17.1 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|55378315|ref|YP_136165.1| - 0.01 15.4 0.1 0.03 13.9 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|55378315|ref|YP_136165.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55378315|ref|YP_136165.1| - 0.16 11.6 0.1 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|55378316|ref|YP_136166.1| - 7.7e-15 54.2 0.0 1.3e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|55378316|ref|YP_136166.1| - 9.4e-07 28.1 0.0 1.8e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55378316|ref|YP_136166.1| - 7.1e-05 22.4 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|55378316|ref|YP_136166.1| - 0.00038 20.2 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|55378316|ref|YP_136166.1| - 0.0004 19.6 0.2 0.0012 18.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|55378316|ref|YP_136166.1| - 0.001 18.5 2.6 0.0012 18.3 0.0 2.4 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|55378316|ref|YP_136166.1| - 0.0018 17.7 0.0 0.004 16.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|55378316|ref|YP_136166.1| - 0.0075 15.8 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|55378316|ref|YP_136166.1| - 0.0094 16.0 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_1 PF00126.22 gi|55378316|ref|YP_136166.1| - 0.011 15.5 0.6 0.11 12.2 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.1 gi|55378316|ref|YP_136166.1| - 0.015 15.4 0.2 0.11 12.6 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|55378316|ref|YP_136166.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.2 gi|55378316|ref|YP_136166.1| - 0.047 13.7 0.0 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|55378316|ref|YP_136166.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.14 gi|55378316|ref|YP_136166.1| - 0.14 11.6 0.0 0.34 10.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF4330 PF14221.1 gi|55378317|ref|YP_136167.1| - 8.6e-27 94.0 14.7 2e-09 37.5 0.7 5.2 4 1 0 5 5 5 5 Domain of unknown function (DUF4330) HlyD_3 PF13437.1 gi|55378317|ref|YP_136167.1| - 0.0032 17.8 7.8 0.33 11.3 0.1 4.5 5 1 0 5 5 5 2 HlyD family secretion protein BATS PF06968.8 gi|55378317|ref|YP_136167.1| - 0.069 12.9 0.2 1.1 9.1 0.0 2.6 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain CbiG_N PF11760.3 gi|55378318|ref|YP_136168.1| - 0.14 11.9 0.0 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal Antitoxin-MazE PF04014.13 gi|55378319|ref|YP_136169.1| - 9e-11 41.2 0.1 1.4e-10 40.6 0.1 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE HTH_29 PF13551.1 gi|55378321|ref|YP_136171.1| - 6.4e-11 42.3 0.0 2.7e-10 40.3 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|55378321|ref|YP_136171.1| - 7e-11 42.0 0.0 1.4e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|55378321|ref|YP_136171.1| - 1.5e-09 38.5 1.0 5.3e-08 33.5 0.0 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|55378321|ref|YP_136171.1| - 1.9e-08 33.6 0.7 2.1e-06 27.1 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|55378321|ref|YP_136171.1| - 1.2e-05 24.7 0.0 2.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|55378321|ref|YP_136171.1| - 7.7e-05 22.6 0.1 0.00025 20.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|55378321|ref|YP_136171.1| - 0.00019 21.5 0.0 0.00039 20.5 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|55378321|ref|YP_136171.1| - 0.0046 16.1 0.0 0.007 15.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease PRiA4_ORF3 PF07929.6 gi|55378322|ref|YP_136172.1| - 4.1e-12 45.8 0.2 1.4e-11 44.1 0.1 1.7 1 1 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein zf-C2H2_6 PF13912.1 gi|55378323|ref|YP_136173.1| - 0.038 13.8 0.1 0.069 13.0 0.1 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger DUF387 PF04079.11 gi|55378325|ref|YP_136175.1| - 0.11 11.8 0.1 0.36 10.1 0.0 1.8 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) SWIM PF04434.12 gi|55378329|ref|YP_136179.1| - 1.8e-09 36.8 0.3 3.1e-09 36.1 0.2 1.3 1 0 0 1 1 1 1 SWIM zinc finger Cut8_M PF14483.1 gi|55378329|ref|YP_136179.1| - 0.00013 21.6 0.1 0.0004 20.1 0.1 1.7 2 0 0 2 2 2 1 Cut8 dimerisation domain XPC-binding PF09280.6 gi|55378329|ref|YP_136179.1| - 0.054 12.9 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 XPC-binding domain FaeA PF04703.7 gi|55378331|ref|YP_136181.1| - 0.0051 16.9 0.0 0.025 14.7 0.0 1.9 2 0 0 2 2 2 1 FaeA-like protein TrmB PF01978.14 gi|55378331|ref|YP_136181.1| - 0.014 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3810 PF12725.2 gi|55378331|ref|YP_136181.1| - 0.065 12.1 0.1 0.079 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) OrfB_Zn_ribbon PF07282.6 gi|55378333|ref|YP_136183.1| - 9.1e-24 82.9 1.4 1.9e-23 81.8 1.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|55378333|ref|YP_136183.1| - 1.2e-11 44.4 0.0 1.9e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|55378333|ref|YP_136183.1| - 0.045 13.4 0.1 0.11 12.1 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|55378333|ref|YP_136183.1| - 0.29 11.2 2.3 0.5 10.4 1.6 1.4 1 0 0 1 1 1 0 C1-like domain DZR PF12773.2 gi|55378333|ref|YP_136183.1| - 0.33 10.8 5.5 0.11 12.3 1.7 1.7 2 0 0 2 2 2 0 Double zinc ribbon DUF2072 PF09845.4 gi|55378333|ref|YP_136183.1| - 0.51 10.2 3.4 2.8 7.8 0.0 2.4 2 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) DNA_RNApol_7kD PF03604.8 gi|55378333|ref|YP_136183.1| - 7.5 6.1 7.1 2.9 7.4 1.8 2.5 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DDE_Tnp_1 PF01609.16 gi|55378334|ref|YP_136184.1| - 9e-23 80.9 2.4 2.1e-22 79.7 1.7 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|55378334|ref|YP_136184.1| - 0.0005 19.8 0.0 0.00087 19.0 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|55378334|ref|YP_136184.1| - 0.0019 18.1 0.5 0.0044 17.0 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|55378334|ref|YP_136184.1| - 0.0094 16.1 0.1 0.022 14.9 0.1 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF1989 PF09347.5 gi|55378334|ref|YP_136184.1| - 0.015 14.7 0.1 0.023 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1989) rve PF00665.21 gi|55378334|ref|YP_136184.1| - 0.033 14.3 0.4 0.17 12.0 0.3 2.1 1 1 0 1 1 1 0 Integrase core domain HTH_29 PF13551.1 gi|55378335|ref|YP_136185.1| - 1.8e-14 53.8 0.0 4.5e-14 52.5 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|55378335|ref|YP_136185.1| - 4e-09 37.1 1.2 1.3e-08 35.4 0.0 2.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|55378335|ref|YP_136185.1| - 1.8e-08 34.1 0.7 4e-08 33.1 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|55378335|ref|YP_136185.1| - 3.1e-08 33.0 0.7 6.6e-08 31.9 0.2 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|55378335|ref|YP_136185.1| - 3.4e-06 26.4 0.0 0.0059 16.1 0.0 3.3 3 0 0 3 3 3 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|55378335|ref|YP_136185.1| - 0.013 15.8 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 OrfB_IS605 PF01385.14 gi|55378339|ref|YP_136189.1| - 5.6e-46 156.7 0.0 7.4e-46 156.3 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|55378339|ref|YP_136189.1| - 2.6e-20 71.8 2.4 2.6e-20 71.8 1.7 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|55378339|ref|YP_136189.1| - 0.039 13.7 3.4 0.1 12.4 2.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|55378339|ref|YP_136189.1| - 0.053 12.9 4.4 0.13 11.7 3.1 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|55378339|ref|YP_136189.1| - 1.3 8.3 7.3 4.8 6.5 5.0 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0175 PF03683.8 gi|55378341|ref|YP_136191.1| - 4.6e-13 48.4 0.7 4.6e-13 48.4 0.5 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|55378341|ref|YP_136191.1| - 0.00037 20.2 0.5 0.00037 20.2 0.3 2.7 4 1 0 4 4 4 1 Ribbon-helix-helix protein, copG family Cdc6_C PF09079.6 gi|55378342|ref|YP_136192.1| - 1.8e-20 72.4 0.1 8.5e-20 70.2 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|55378342|ref|YP_136192.1| - 2.1e-11 44.0 0.0 5.7e-11 42.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|55378342|ref|YP_136192.1| - 7.2e-10 39.1 0.3 3.4e-09 36.9 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|55378342|ref|YP_136192.1| - 4.1e-06 25.8 0.0 6.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|55378342|ref|YP_136192.1| - 6.9e-06 25.8 0.0 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|55378342|ref|YP_136192.1| - 0.00023 21.3 0.0 0.00056 20.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|55378342|ref|YP_136192.1| - 0.0016 18.1 0.0 0.008 15.9 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase DEAD PF00270.24 gi|55378342|ref|YP_136192.1| - 0.0022 17.4 0.1 1.2 8.5 0.0 2.4 1 1 1 2 2 2 2 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|55378342|ref|YP_136192.1| - 0.0039 17.4 0.0 0.011 16.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|55378342|ref|YP_136192.1| - 0.0082 16.9 0.2 0.021 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|55378342|ref|YP_136192.1| - 0.0093 14.9 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_32 PF13654.1 gi|55378342|ref|YP_136192.1| - 0.013 14.2 0.3 0.39 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|55378342|ref|YP_136192.1| - 0.013 15.6 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|55378342|ref|YP_136192.1| - 0.014 14.5 0.0 0.036 13.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin T2SE PF00437.15 gi|55378342|ref|YP_136192.1| - 0.02 13.8 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|55378342|ref|YP_136192.1| - 0.02 14.3 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|55378342|ref|YP_136192.1| - 0.024 14.3 0.1 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|55378342|ref|YP_136192.1| - 0.052 12.9 0.3 2.2 7.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain Sigma54_activ_2 PF14532.1 gi|55378342|ref|YP_136192.1| - 0.055 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|55378342|ref|YP_136192.1| - 0.06 11.9 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|55378342|ref|YP_136192.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Erp_C PF06780.6 gi|55378342|ref|YP_136192.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Erp protein C-terminus AAA_24 PF13479.1 gi|55378342|ref|YP_136192.1| - 0.14 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|55378343|ref|YP_136193.1| - 1.3e-19 69.6 0.1 3.6e-19 68.2 0.0 1.7 2 1 0 2 2 2 1 CDC6, C terminal HhH-GPD PF00730.20 gi|55378343|ref|YP_136193.1| - 0.032 14.5 0.0 0.17 12.1 0.0 1.9 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein ABC_tran PF00005.22 gi|55378344|ref|YP_136194.1| - 5.2e-32 110.9 0.0 9.2e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|55378344|ref|YP_136194.1| - 2.5e-06 26.8 0.2 2.7e-05 23.5 0.8 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|55378344|ref|YP_136194.1| - 5e-06 27.3 0.2 5.2e-05 24.0 0.2 2.7 2 1 0 2 2 2 1 AAA domain ABC_membrane PF00664.18 gi|55378344|ref|YP_136194.1| - 8.9e-06 25.3 8.6 1.2e-05 24.8 6.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region DUF258 PF03193.11 gi|55378344|ref|YP_136194.1| - 5.3e-05 22.4 0.0 9.5e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|55378344|ref|YP_136194.1| - 0.00012 22.1 0.1 0.092 12.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|55378344|ref|YP_136194.1| - 0.0025 17.3 0.0 0.0051 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|55378344|ref|YP_136194.1| - 0.0025 17.2 0.3 0.017 14.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|55378344|ref|YP_136194.1| - 0.0046 16.5 1.3 0.74 9.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|55378344|ref|YP_136194.1| - 0.012 15.7 0.6 0.094 12.8 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|55378344|ref|YP_136194.1| - 0.075 13.0 1.0 0.44 10.4 0.7 2.4 1 1 0 1 1 1 0 AAA ATPase domain NUDIX PF00293.23 gi|55378345|ref|YP_136195.1| - 1.7e-12 47.1 0.0 2.1e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|55378345|ref|YP_136195.1| - 0.00044 19.6 0.0 0.00083 18.7 0.0 1.4 1 0 0 1 1 1 1 NUDIX domain Epimerase PF01370.16 gi|55378346|ref|YP_136196.1| - 8.5e-51 172.6 0.1 1.1e-50 172.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|55378346|ref|YP_136196.1| - 1.9e-16 59.8 0.0 8.3e-12 44.5 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|55378346|ref|YP_136196.1| - 3.3e-14 52.2 0.1 5.5e-14 51.5 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|55378346|ref|YP_136196.1| - 3.5e-13 49.0 0.2 1.1e-12 47.4 0.1 1.7 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|55378346|ref|YP_136196.1| - 7.3e-10 39.0 1.0 1.3e-09 38.2 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|55378346|ref|YP_136196.1| - 1.4e-07 30.7 0.1 3.5e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55378346|ref|YP_136196.1| - 2.4e-05 24.4 0.1 3.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|55378346|ref|YP_136196.1| - 2.6e-05 23.9 0.1 4.4e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|55378346|ref|YP_136196.1| - 0.00072 18.8 0.1 0.001 18.3 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|55378347|ref|YP_136197.1| - 2.3e-57 194.1 0.0 2.7e-57 193.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55378347|ref|YP_136197.1| - 1.5e-10 40.4 0.0 1e-08 34.4 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|55378347|ref|YP_136197.1| - 2.8e-08 33.0 0.0 0.011 14.6 0.0 3.1 2 1 1 3 3 3 3 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|55378347|ref|YP_136197.1| - 4.4e-07 28.8 0.0 7.1e-05 21.6 0.0 2.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|55378347|ref|YP_136197.1| - 3.3e-05 22.9 0.1 0.00047 19.1 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|55378347|ref|YP_136197.1| - 9.3e-05 22.4 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|55378347|ref|YP_136197.1| - 0.087 12.7 0.0 0.22 11.4 0.0 1.7 2 1 0 2 2 2 0 short chain dehydrogenase DDE_3 PF13358.1 gi|55378348|ref|YP_136198.1| - 6.8e-23 81.0 0.0 8.4e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|55378349|ref|YP_136199.1| - 4e-14 52.7 0.0 4.8e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|55378349|ref|YP_136199.1| - 2.9e-08 34.3 0.1 5.7e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_23 PF13384.1 gi|55378349|ref|YP_136199.1| - 0.00029 20.3 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|55378349|ref|YP_136199.1| - 0.00072 19.0 0.1 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|55378349|ref|YP_136199.1| - 0.018 14.9 0.0 0.029 14.3 0.0 1.6 1 1 0 1 1 1 0 Transposase HTH_28 PF13518.1 gi|55378349|ref|YP_136199.1| - 0.084 12.8 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_transf_10 PF00852.14 gi|55378350|ref|YP_136200.1| - 1e-14 53.8 0.1 4e-14 51.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase family 10 (fucosyltransferase) DDE_Tnp_1 PF01609.16 gi|55378351|ref|YP_136201.1| - 1.9e-09 37.3 1.3 8.3e-09 35.3 0.9 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|55378354|ref|YP_136204.1| - 6e-09 35.7 0.2 7.6e-09 35.4 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF2889 PF11136.3 gi|55378354|ref|YP_136204.1| - 0.016 15.4 0.0 0.069 13.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2889) O-antigen_lig PF13425.1 gi|55378356|ref|YP_136206.1| - 2.1e-11 43.9 14.3 2.1e-11 43.9 9.9 3.3 2 2 0 2 2 2 1 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|55378356|ref|YP_136206.1| - 0.0011 18.8 17.5 0.0011 18.8 12.2 4.2 2 2 0 2 2 2 1 O-Antigen ligase DUF3377 PF11857.3 gi|55378356|ref|YP_136206.1| - 0.0047 16.5 1.8 0.58 9.8 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF3377) Glyco_trans_1_4 PF13692.1 gi|55378357|ref|YP_136207.1| - 6.7e-19 68.3 0.0 5.1e-18 65.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|55378357|ref|YP_136207.1| - 7.5e-18 64.5 0.0 1.2e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55378357|ref|YP_136207.1| - 4.4e-05 23.6 0.0 8.3e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55378357|ref|YP_136207.1| - 0.00084 19.5 0.0 0.0017 18.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55378357|ref|YP_136207.1| - 0.038 13.7 0.0 0.17 11.5 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|55378358|ref|YP_136208.1| - 5e-33 113.9 0.0 7.1e-33 113.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55378358|ref|YP_136208.1| - 1.4e-22 80.5 0.8 3.1e-22 79.4 0.5 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55378358|ref|YP_136208.1| - 4.4e-18 65.6 0.0 6.1e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|55378358|ref|YP_136208.1| - 9.6e-18 64.6 0.1 3.7e-17 62.7 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|55378358|ref|YP_136208.1| - 6e-08 32.6 0.0 1.1e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|55378358|ref|YP_136208.1| - 4.3e-05 23.7 0.0 0.00012 22.2 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3492 PF11997.3 gi|55378358|ref|YP_136208.1| - 0.046 13.2 0.0 0.1 12.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) Glycos_transf_N PF04413.11 gi|55378358|ref|YP_136208.1| - 0.066 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_transf_5 PF08323.6 gi|55378358|ref|YP_136208.1| - 0.084 12.3 0.4 3.2 7.1 0.3 2.4 1 1 1 2 2 2 0 Starch synthase catalytic domain NTP_transferase PF00483.18 gi|55378359|ref|YP_136209.1| - 0.018 14.3 0.0 0.018 14.3 0.0 1.0 1 0 0 1 1 1 0 Nucleotidyl transferase Bac_transf PF02397.11 gi|55378360|ref|YP_136210.1| - 1.3e-60 203.7 0.0 2.2e-60 202.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase SIS PF01380.17 gi|55378361|ref|YP_136211.1| - 6e-51 171.4 0.8 1.7e-25 89.1 0.0 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|55378361|ref|YP_136211.1| - 0.015 14.9 0.1 1.1 8.9 0.0 2.8 2 1 0 2 2 2 0 SIS domain OrfB_Zn_ribbon PF07282.6 gi|55378362|ref|YP_136212.1| - 6.9e-20 70.4 0.1 1.4e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|55378362|ref|YP_136212.1| - 9.3e-06 25.1 0.0 1.9e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Probable transposase SecY PF00344.15 gi|55378363|ref|YP_136213.1| - 9.5e-95 317.4 17.6 1.2e-94 317.1 12.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|55378363|ref|YP_136213.1| - 5e-08 32.3 0.7 1.3e-07 30.9 0.5 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|55378364|ref|YP_136214.1| - 6.5e-27 94.4 0.7 6.5e-27 94.4 0.5 1.3 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 Rpp20 PF12328.3 gi|55378364|ref|YP_136214.1| - 0.6 9.7 4.3 0.98 9.0 3.0 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Ribosomal_L30 PF00327.15 gi|55378365|ref|YP_136215.1| - 1e-13 50.5 0.0 1.7e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|55378366|ref|YP_136216.1| - 3.2e-28 97.2 0.4 5.4e-28 96.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|55378366|ref|YP_136216.1| - 1.4e-24 85.1 0.0 2.1e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|55378367|ref|YP_136217.1| - 5.1e-36 123.4 0.0 6.4e-36 123.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family cwf21 PF08312.7 gi|55378367|ref|YP_136217.1| - 0.033 14.0 0.0 0.078 12.8 0.0 1.6 1 0 0 1 1 1 0 cwf21 domain Ribosomal_L19e PF01280.15 gi|55378368|ref|YP_136218.1| - 2.9e-56 189.3 6.3 3.1e-56 189.2 4.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF3658 PF12395.3 gi|55378368|ref|YP_136218.1| - 0.031 13.8 0.4 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function SHOCT PF09851.4 gi|55378368|ref|YP_136218.1| - 0.042 13.3 1.6 0.2 11.1 0.2 2.7 2 1 0 2 2 2 0 Short C-terminal domain SAND PF01342.16 gi|55378368|ref|YP_136218.1| - 0.048 13.3 0.4 0.11 12.2 0.3 1.5 1 0 0 1 1 1 0 SAND domain Ribosomal_L32e PF01655.13 gi|55378369|ref|YP_136219.1| - 1.4e-39 134.5 0.7 1.1e-38 131.6 0.8 1.9 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|55378369|ref|YP_136219.1| - 1.1e-15 57.4 2.7 2.3e-12 46.9 0.3 2.8 3 0 0 3 3 3 2 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|55378369|ref|YP_136219.1| - 5.9e-07 28.9 0.0 2.7e-06 26.8 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|55378369|ref|YP_136219.1| - 8.7e-07 28.3 0.4 0.0051 16.4 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|55378369|ref|YP_136219.1| - 5.6e-06 26.1 0.0 0.00012 21.8 0.0 2.7 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.2 gi|55378369|ref|YP_136219.1| - 0.0001 22.1 0.1 0.00065 19.5 0.1 2.1 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|55378369|ref|YP_136219.1| - 0.0069 16.3 0.1 0.72 9.8 0.0 2.5 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|55378369|ref|YP_136219.1| - 0.011 15.9 0.2 1.6 8.9 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L6 PF00347.18 gi|55378370|ref|YP_136220.1| - 1.7e-28 98.8 0.1 1.5e-13 51.0 0.0 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.12 gi|55378370|ref|YP_136220.1| - 0.62 9.8 4.8 19 5.0 0.0 3.5 4 0 0 4 4 4 0 BON domain HSP20 PF00011.16 gi|55378370|ref|YP_136220.1| - 2.1 8.2 4.8 2.3 8.1 0.1 3.1 2 2 1 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.14 gi|55378371|ref|YP_136221.1| - 1.2e-22 80.1 0.0 1.6e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|297616204|ref|YP_003710345.1| - 9.8e-15 53.6 1.5 1.1e-14 53.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|297616204|ref|YP_003710345.1| - 0.00053 19.6 0.1 0.00065 19.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|297616204|ref|YP_003710345.1| - 0.082 12.7 0.6 0.093 12.6 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Ribosomal_L5_C PF00673.16 gi|55378372|ref|YP_136222.1| - 1.1e-21 76.3 0.0 1.6e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|55378372|ref|YP_136222.1| - 2.5e-21 75.2 0.0 4.4e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|55378373|ref|YP_136223.1| - 3.9e-24 84.1 0.0 7.3e-24 83.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|55378373|ref|YP_136223.1| - 2.3e-10 40.1 0.1 4.3e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|55378373|ref|YP_136223.1| - 5e-05 22.6 0.2 0.00013 21.3 0.0 1.8 2 0 0 2 2 2 1 S4 domain Peptidase_S24 PF00717.18 gi|55378373|ref|YP_136223.1| - 0.0064 16.1 0.1 0.015 14.8 0.1 1.7 1 0 0 1 1 1 1 Peptidase S24-like KOW PF00467.24 gi|55378373|ref|YP_136223.1| - 0.0088 15.7 2.0 0.0089 15.7 0.1 2.1 2 0 0 2 2 2 1 KOW motif KOW PF00467.24 gi|55378374|ref|YP_136224.1| - 1.3e-08 34.2 0.6 1.3e-08 34.2 0.4 1.9 2 0 0 2 2 2 1 KOW motif Band_7 PF01145.20 gi|55378374|ref|YP_136224.1| - 0.082 12.8 0.4 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family Ribosomal_L14 PF00238.14 gi|55378375|ref|YP_136225.1| - 2.8e-36 123.9 0.0 3.1e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|55378376|ref|YP_136226.1| - 2.3e-29 101.2 0.7 2.8e-29 100.9 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Rad9_Rad53_bind PF08605.5 gi|55378376|ref|YP_136226.1| - 0.084 12.6 0.0 0.1 12.3 0.0 1.3 1 1 0 1 1 1 0 Fungal Rad9-like Rad53-binding Ribosomal_L29 PF00831.18 gi|55378377|ref|YP_136227.1| - 1.2e-20 72.9 0.2 1.4e-20 72.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein KH_2 PF07650.12 gi|55378378|ref|YP_136228.1| - 1.2e-16 59.9 0.0 2.9e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|55378378|ref|YP_136228.1| - 2e-15 56.7 0.1 3.1e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|55378378|ref|YP_136228.1| - 0.00032 20.2 0.1 0.00032 20.2 0.1 2.4 3 1 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|55378378|ref|YP_136228.1| - 0.0083 15.7 3.2 0.016 14.8 0.9 2.4 2 0 0 2 2 2 1 KH domain KH_5 PF13184.1 gi|55378378|ref|YP_136228.1| - 0.05 13.4 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 NusA-like KH domain Toprim_C_rpt PF13368.1 gi|55378378|ref|YP_136228.1| - 2.3 8.7 6.3 18 5.8 0.9 2.8 2 1 0 2 2 2 0 Topoisomerase C-terminal repeat KH_4 PF13083.1 gi|55378378|ref|YP_136228.1| - 4.4 7.0 7.3 0.22 11.2 0.2 2.4 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|55378379|ref|YP_136229.1| - 1.3e-26 92.5 0.0 1.5e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|55378380|ref|YP_136230.1| - 6.8e-29 99.3 0.4 1.5e-28 98.2 0.0 1.7 2 1 1 3 3 3 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|55378381|ref|YP_136231.1| - 1.7e-46 157.2 1.1 2.2e-46 156.8 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|55378381|ref|YP_136231.1| - 8.4e-16 57.7 0.0 2e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|55378382|ref|YP_136232.1| - 1.6e-20 72.8 0.5 3e-20 71.9 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 PqqD PF05402.7 gi|55378382|ref|YP_136232.1| - 0.043 13.8 0.2 0.078 13.0 0.1 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) TusA PF01206.12 gi|55378382|ref|YP_136232.1| - 0.079 12.5 0.1 0.11 12.1 0.1 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA DNase-RNase PF02577.9 gi|55378382|ref|YP_136232.1| - 0.087 12.0 0.1 0.098 11.8 0.1 1.1 1 0 0 1 1 1 0 Bifunctional nuclease Ribosomal_L4 PF00573.17 gi|55378383|ref|YP_136233.1| - 4.6e-40 137.0 0.1 5.4e-40 136.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|55378384|ref|YP_136234.1| - 3.8e-92 308.3 0.0 4.4e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|55378385|ref|YP_136235.1| - 8.1e-49 166.5 0.0 9.5e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1508 PF07411.7 gi|55378386|ref|YP_136236.1| - 4.5e-45 150.8 2.3 5.5e-23 80.1 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) Tombus_P19 PF03220.8 gi|55378386|ref|YP_136236.1| - 0.0062 15.8 0.1 1.1 8.5 0.0 2.2 2 0 0 2 2 2 2 Tombusvirus P19 core protein DUF1083 PF06452.6 gi|55378386|ref|YP_136236.1| - 0.0096 15.8 1.4 0.013 15.3 0.8 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1083) DUF2341 PF10102.4 gi|55378386|ref|YP_136236.1| - 0.014 15.5 0.1 7.2 6.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) SpoIIIAH PF12685.2 gi|55378386|ref|YP_136236.1| - 0.099 12.1 2.1 0.55 9.6 0.6 2.0 1 1 1 2 2 2 0 SpoIIIAH-like protein DUF77 PF01910.12 gi|55378387|ref|YP_136237.1| - 5.1e-25 86.9 0.2 6.2e-25 86.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 HSP9_HSP12 PF04119.7 gi|55378387|ref|YP_136237.1| - 0.52 10.4 3.6 0.24 11.4 0.5 1.8 2 0 0 2 2 2 0 Heat shock protein 9/12 DUF3606 PF12244.3 gi|55378387|ref|YP_136237.1| - 2 8.0 5.2 1.3 8.6 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3606) MCH PF02289.11 gi|55378388|ref|YP_136238.1| - 5.8e-86 288.3 0.7 6.5e-86 288.2 0.5 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU PF00009.22 gi|55378390|ref|YP_136240.1| - 3.3e-33 114.7 0.0 5.2e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|55378390|ref|YP_136240.1| - 1.4e-14 54.0 0.0 3e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|55378390|ref|YP_136240.1| - 7.3e-12 45.2 0.5 2.3e-11 43.6 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.12 gi|55378390|ref|YP_136240.1| - 0.0056 16.2 0.8 0.027 14.0 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU_D4 PF14578.1 gi|55378390|ref|YP_136240.1| - 0.012 15.2 2.6 0.013 15.1 0.5 2.0 2 0 0 2 2 2 0 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|55378390|ref|YP_136240.1| - 0.053 13.4 0.0 0.13 12.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Hydrolase_3 PF08282.7 gi|55378391|ref|YP_136241.1| - 1.2e-26 93.8 0.0 4.3e-17 62.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|55378391|ref|YP_136241.1| - 3.5e-08 33.0 0.0 3e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|55378391|ref|YP_136241.1| - 4.3e-07 30.5 1.7 0.0015 18.9 0.2 2.7 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|55378391|ref|YP_136241.1| - 4.9e-06 26.8 0.7 0.00087 19.5 0.0 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|55378391|ref|YP_136241.1| - 0.0088 16.2 0.3 4.4 7.5 0.0 2.6 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DnaJ PF00226.26 gi|55378392|ref|YP_136242.1| - 2.3e-17 62.4 0.2 3.3e-17 61.9 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|55378392|ref|YP_136242.1| - 0.0041 16.4 0.0 0.012 14.9 0.0 1.6 1 1 1 2 2 2 1 A repeated domain in UCH-protein Ribonuc_red_lgC PF02867.10 gi|55378393|ref|YP_136243.1| - 8.2e-156 519.7 0.0 1e-155 519.4 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|55378393|ref|YP_136243.1| - 5.8e-30 103.0 0.0 7.3e-28 96.3 0.0 3.3 4 0 0 4 4 4 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|55378393|ref|YP_136243.1| - 7.4e-26 89.7 0.0 2.8e-25 87.9 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TraG-D_C PF12696.2 gi|55378393|ref|YP_136243.1| - 0.012 15.5 0.0 0.036 13.9 0.0 1.8 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Y_phosphatase3C PF13348.1 gi|55378393|ref|YP_136243.1| - 0.09 12.9 0.3 1.3 9.1 0.0 3.0 2 1 1 3 3 3 0 Tyrosine phosphatase family C-terminal region zf-ribbon_3 PF13248.1 gi|55378393|ref|YP_136243.1| - 2.6 7.3 6.3 5.5 6.3 4.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Oxidored_molyb PF00174.14 gi|55378396|ref|YP_136245.1| - 2.2e-42 144.3 0.0 3.6e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|55378396|ref|YP_136245.1| - 2.8e-16 59.3 0.0 9.8e-16 57.5 0.0 1.9 2 0 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|55378396|ref|YP_136245.1| - 0.055 13.2 0.2 0.16 11.8 0.2 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat PAS_9 PF13426.1 gi|55378395|ref|YP_136246.1| - 2.2e-57 191.8 3.3 3e-16 59.6 0.1 4.6 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|55378395|ref|YP_136246.1| - 3.1e-44 149.5 5.2 7.6e-17 61.3 0.2 4.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|55378395|ref|YP_136246.1| - 6.3e-36 122.5 1.8 6.3e-14 51.7 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|55378395|ref|YP_136246.1| - 1.1e-35 121.5 0.2 9.2e-12 44.9 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|55378395|ref|YP_136246.1| - 2.1e-23 81.3 1.2 6.2e-08 32.2 0.0 4.8 5 0 0 5 5 5 3 PAS domain HATPase_c PF02518.21 gi|55378395|ref|YP_136246.1| - 4.1e-20 71.5 0.0 1e-19 70.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|55378395|ref|YP_136246.1| - 2.6e-18 66.0 0.0 7.1e-18 64.6 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55378395|ref|YP_136246.1| - 1.1e-10 41.3 0.6 1.1e-10 41.3 0.4 3.3 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|55378395|ref|YP_136246.1| - 1.6e-05 25.0 0.0 0.05 13.8 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|55378395|ref|YP_136246.1| - 0.00058 19.7 0.0 0.93 9.4 0.0 4.1 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.1 gi|55378395|ref|YP_136246.1| - 0.026 14.1 0.0 0.056 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKAP2_C PF15304.1 gi|55378395|ref|YP_136246.1| - 0.25 10.9 8.2 5 6.6 0.3 3.3 3 0 0 3 3 3 0 A-kinase anchor protein 2 C-terminus SNARE_assoc PF09335.6 gi|55378397|ref|YP_136247.1| - 1.7e-18 67.0 4.8 4.1e-18 65.7 3.3 1.7 1 0 0 1 1 1 1 SNARE associated Golgi protein ECF-ribofla_trS PF07155.7 gi|55378397|ref|YP_136247.1| - 2.6 7.7 9.0 3.2 7.4 0.3 2.3 2 1 0 2 2 2 0 ECF-type riboflavin transporter, S component SlyX PF04102.7 gi|55378399|ref|YP_136249.1| - 0.032 14.5 3.8 0.082 13.2 2.6 1.7 1 0 0 1 1 1 0 SlyX HAUS-augmin3 PF14932.1 gi|55378399|ref|YP_136249.1| - 0.034 13.3 1.0 0.058 12.5 0.7 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 COG2 PF06148.6 gi|55378399|ref|YP_136249.1| - 0.042 13.7 0.8 0.071 12.9 0.5 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_DNA_bd PF12329.3 gi|55378399|ref|YP_136249.1| - 0.063 13.0 2.3 0.15 11.8 1.6 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF2664 PF10867.3 gi|55378399|ref|YP_136249.1| - 0.1 13.2 1.5 0.28 11.8 1.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2664) TPX2 PF06886.6 gi|55378399|ref|YP_136249.1| - 0.37 10.8 3.1 0.75 9.9 2.2 1.5 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) HalX PF08663.5 gi|55378400|ref|YP_136250.1| - 7e-28 96.4 5.2 1e-27 95.8 3.6 1.3 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|55378400|ref|YP_136250.1| - 1.4e-05 25.0 0.1 3.7e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain DUF2959 PF11172.3 gi|55378400|ref|YP_136250.1| - 0.052 13.3 1.2 0.068 12.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) DUF496 PF04363.7 gi|55378400|ref|YP_136250.1| - 0.1 12.3 0.1 0.21 11.4 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF496) Laminin_B PF00052.13 gi|55378400|ref|YP_136250.1| - 0.12 11.9 0.4 0.3 10.6 0.1 1.7 1 1 1 2 2 2 0 Laminin B (Domain IV) Pyridox_oxidase PF01243.15 gi|55378401|ref|YP_136251.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Myb_DNA-binding PF00249.26 gi|55378401|ref|YP_136251.1| - 0.15 12.1 0.2 0.55 10.3 0.1 2.0 2 0 0 2 2 2 0 Myb-like DNA-binding domain DUF899 PF05988.7 gi|55378402|ref|YP_136252.1| - 0.095 12.1 0.1 0.13 11.6 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Peptidase_M50 PF02163.17 gi|55378407|ref|YP_136257.1| - 5.1e-13 48.4 11.7 5.6e-13 48.2 4.2 2.7 2 1 0 2 2 2 1 Peptidase family M50 ScpA_ScpB PF02616.9 gi|55378408|ref|YP_136258.1| - 4e-24 85.5 0.0 5.1e-23 81.9 0.0 2.0 1 1 0 1 1 1 1 ScpA/B protein XkdW PF09636.5 gi|55378408|ref|YP_136258.1| - 0.095 12.5 0.8 10 6.0 0.1 2.8 2 1 1 3 3 3 0 XkdW protein SMC_N PF02463.14 gi|55378409|ref|YP_136259.1| - 3e-44 150.8 66.6 4e-43 147.1 46.1 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|55378409|ref|YP_136259.1| - 5.5e-29 100.5 0.0 2.4e-28 98.4 0.0 2.2 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|55378409|ref|YP_136259.1| - 2.9e-20 73.4 7.7 2.9e-20 73.4 5.3 8.1 2 2 1 3 3 1 1 AAA domain Reo_sigmaC PF04582.7 gi|55378409|ref|YP_136259.1| - 4.6e-14 52.3 34.7 0.00019 20.7 2.2 6.5 2 2 3 6 6 6 6 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|55378409|ref|YP_136259.1| - 3.8e-13 48.8 111.8 6.3e-06 24.9 16.2 6.1 3 2 3 6 6 6 5 AAA domain AAA_21 PF13304.1 gi|55378409|ref|YP_136259.1| - 1.3e-11 45.0 0.1 1.9e-06 28.1 0.0 4.0 4 1 0 4 4 3 2 AAA domain IncA PF04156.9 gi|55378409|ref|YP_136259.1| - 8.7e-08 31.9 163.9 0.013 15.0 9.1 8.2 2 2 6 8 8 8 4 IncA protein AAA_29 PF13555.1 gi|55378409|ref|YP_136259.1| - 9.3e-07 28.2 0.0 2.5e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Cast PF10174.4 gi|55378409|ref|YP_136259.1| - 1.7e-06 26.3 150.5 1e-05 23.8 46.3 3.2 2 1 1 3 3 3 3 RIM-binding protein of the cytomatrix active zone EzrA PF06160.7 gi|55378409|ref|YP_136259.1| - 4.3e-05 21.9 19.6 4.3e-05 21.9 13.6 5.8 2 2 1 3 3 2 1 Septation ring formation regulator, EzrA Fib_alpha PF08702.5 gi|55378409|ref|YP_136259.1| - 4.9e-05 23.4 7.7 4.9e-05 23.4 5.3 7.1 4 2 1 7 7 7 3 Fibrinogen alpha/beta chain family TMF_DNA_bd PF12329.3 gi|55378409|ref|YP_136259.1| - 5.8e-05 22.8 12.5 5.8e-05 22.8 8.7 12.0 4 3 8 13 13 12 3 TATA element modulatory factor 1 DNA binding DUF948 PF06103.6 gi|55378409|ref|YP_136259.1| - 8.8e-05 22.2 2.6 8.8e-05 22.2 1.8 8.7 4 2 5 9 9 9 2 Bacterial protein of unknown function (DUF948) ATG16 PF08614.6 gi|55378409|ref|YP_136259.1| - 0.0007 19.4 140.3 0.11 12.2 6.9 9.6 2 2 5 8 8 8 4 Autophagy protein 16 (ATG16) Spc7 PF08317.6 gi|55378409|ref|YP_136259.1| - 0.011 14.4 133.6 0.0052 15.4 11.4 7.5 2 2 6 8 8 7 0 Spc7 kinetochore protein MscS_porin PF12795.2 gi|55378409|ref|YP_136259.1| - 0.013 14.8 121.9 0.091 12.0 14.8 6.2 2 2 2 5 5 5 0 Mechanosensitive ion channel porin domain Cep57_MT_bd PF06657.8 gi|55378409|ref|YP_136259.1| - 0.013 15.4 1.5 0.013 15.4 1.0 10.6 7 3 5 12 12 10 0 Centrosome microtubule-binding domain of Cep57 Myosin_tail_1 PF01576.14 gi|55378409|ref|YP_136259.1| - 0.018 12.8 170.9 0.011 13.5 58.6 4.0 2 2 1 3 3 3 0 Myosin tail CENP-F_leu_zip PF10473.4 gi|55378409|ref|YP_136259.1| - 0.025 14.4 159.7 0.2 11.4 9.6 9.2 3 2 6 9 9 9 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|55378409|ref|YP_136259.1| - 0.028 14.2 45.3 0.41 10.4 0.3 8.1 3 2 5 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus Mnd1 PF03962.10 gi|55378409|ref|YP_136259.1| - 0.043 13.4 129.1 0.45 10.1 6.1 8.6 2 2 6 8 8 8 0 Mnd1 family APG6 PF04111.7 gi|55378409|ref|YP_136259.1| - 0.1 11.6 153.8 0.0073 15.3 16.9 7.9 2 2 6 8 8 8 0 Autophagy protein Apg6 DUF3584 PF12128.3 gi|55378409|ref|YP_136259.1| - 0.29 8.3 146.9 0.014 12.7 39.7 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) DUF4200 PF13863.1 gi|55378409|ref|YP_136259.1| - 0.73 9.7 163.9 0.089 12.7 10.0 10.2 3 3 6 9 9 8 0 Domain of unknown function (DUF4200) Filament PF00038.16 gi|55378409|ref|YP_136259.1| - 1.6 8.1 133.2 0.074 12.5 8.4 8.7 2 2 6 8 8 8 0 Intermediate filament protein AAA_15 PF13175.1 gi|55378409|ref|YP_136259.1| - 2.2 7.2 37.0 4.3 6.2 18.6 3.6 2 2 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.1 gi|55378409|ref|YP_136259.1| - 2.9 5.4 138.5 0.83 7.2 15.6 3.8 2 2 1 3 3 3 0 AAA domain GAS PF13851.1 gi|55378409|ref|YP_136259.1| - 3.4 6.7 127.5 0.41 9.8 9.6 7.2 2 2 4 7 7 7 0 Growth-arrest specific micro-tubule binding TBPIP PF07106.8 gi|55378409|ref|YP_136259.1| - 3.6 7.0 125.7 0.29 10.6 2.9 9.2 2 2 7 9 9 9 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Atg14 PF10186.4 gi|55378409|ref|YP_136259.1| - 7.8 5.3 113.1 0.38 9.6 12.2 6.4 3 2 4 7 7 7 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|55378410|ref|YP_136260.1| - 0.0024 16.6 1.1 0.0025 16.5 0.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein SlyX PF04102.7 gi|55378410|ref|YP_136260.1| - 0.0026 18.0 1.0 0.003 17.9 0.0 1.7 2 0 0 2 2 2 1 SlyX Striatin PF08232.7 gi|55378410|ref|YP_136260.1| - 0.003 17.8 1.6 0.0038 17.5 1.1 1.1 1 0 0 1 1 1 1 Striatin family BBP1_C PF15272.1 gi|55378410|ref|YP_136260.1| - 0.017 14.6 1.6 0.027 14.0 1.1 1.3 1 1 0 1 1 1 0 Spindle pole body component BBP1, C-terminal HSBP1 PF06825.7 gi|55378410|ref|YP_136260.1| - 0.027 14.0 0.8 0.5 9.9 0.1 2.3 1 1 1 2 2 2 0 Heat shock factor binding protein 1 FlaC_arch PF05377.6 gi|55378410|ref|YP_136260.1| - 0.039 13.8 1.2 0.069 13.0 0.8 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) bZIP_1 PF00170.16 gi|55378410|ref|YP_136260.1| - 0.058 13.3 0.2 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 bZIP transcription factor DUF2730 PF10805.3 gi|55378410|ref|YP_136260.1| - 0.067 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) BCAS2 PF05700.6 gi|55378410|ref|YP_136260.1| - 0.084 12.3 1.0 0.11 11.9 0.6 1.5 1 1 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) DUF2360 PF10152.4 gi|55378410|ref|YP_136260.1| - 0.099 12.9 3.1 0.13 12.5 2.2 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) RP-C_C PF11800.3 gi|55378410|ref|YP_136260.1| - 0.26 10.9 2.7 0.32 10.6 1.9 1.0 1 0 0 1 1 1 0 Replication protein C C-terminal region Vfa1 PF08432.5 gi|55378410|ref|YP_136260.1| - 0.37 10.8 3.7 0.44 10.5 2.5 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Transposase_22 PF02994.9 gi|55378410|ref|YP_136260.1| - 1.1 7.7 7.1 0.16 10.3 0.1 2.0 1 1 1 2 2 2 0 L1 transposable element RRN3 PF05327.6 gi|55378410|ref|YP_136260.1| - 3.4 5.6 6.6 3.8 5.5 4.6 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Autophagy_N PF03986.8 gi|55378410|ref|YP_136260.1| - 4 7.1 9.1 4.8 6.9 6.2 1.3 1 1 0 1 1 1 0 Autophagocytosis associated protein (Atg3), N-terminal domain WD40_alt PF14077.1 gi|55378410|ref|YP_136260.1| - 7.8 6.2 7.6 14 5.4 1.5 2.3 1 1 1 2 2 2 0 Alternative WD40 repeat motif Med4 PF10018.4 gi|55378410|ref|YP_136260.1| - 8 5.8 12.2 0.44 9.9 0.4 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DICT PF10069.4 gi|55378411|ref|YP_136261.1| - 1.3e-22 79.7 0.0 1.9e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems GatB_N PF02934.10 gi|55378412|ref|YP_136262.1| - 9.6e-109 362.6 0.0 1.3e-108 362.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|55378412|ref|YP_136262.1| - 4.6e-40 136.7 0.0 7.3e-40 136.0 0.0 1.3 1 0 0 1 1 1 1 GatB domain PrgI PF12666.2 gi|55378415|ref|YP_136264.1| - 0.15 12.2 4.5 0.1 12.7 1.3 2.0 2 0 0 2 2 2 0 PrgI family protein Topoisom_bac PF01131.15 gi|55378414|ref|YP_136265.1| - 3.5e-109 365.3 0.0 9.2e-95 317.8 0.0 2.2 2 0 0 2 2 2 2 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|55378414|ref|YP_136265.1| - 4.5e-21 74.0 13.5 9.6e-14 50.6 1.3 3.1 3 0 0 3 3 2 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|55378414|ref|YP_136265.1| - 4.3e-17 61.9 0.0 9.2e-17 60.8 0.0 1.6 1 0 0 1 1 1 1 Toprim domain LAGLIDADG_3 PF14528.1 gi|55378414|ref|YP_136265.1| - 7.9e-14 51.6 0.0 7.4e-08 32.5 0.0 3.2 3 0 0 3 3 2 2 LAGLIDADG-like domain HHH_5 PF14520.1 gi|55378414|ref|YP_136265.1| - 7.2e-08 32.4 8.5 4.2e-07 30.0 0.7 3.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain MarR_2 PF12802.2 gi|55378414|ref|YP_136265.1| - 3e-06 26.8 0.1 2.9e-05 23.6 0.1 2.8 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.1 gi|55378414|ref|YP_136265.1| - 9.8e-06 24.8 0.3 4e-05 22.9 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55378414|ref|YP_136265.1| - 1.3e-05 25.3 0.2 0.00046 20.4 0.0 3.4 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|55378414|ref|YP_136265.1| - 5.5e-05 22.7 0.2 0.00015 21.3 0.2 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|55378414|ref|YP_136265.1| - 6.4e-05 22.5 0.6 0.0062 16.2 0.0 3.7 4 0 0 4 4 3 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|55378414|ref|YP_136265.1| - 0.00035 20.3 0.0 0.0049 16.6 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55378414|ref|YP_136265.1| - 0.0011 18.7 0.8 0.52 10.2 0.1 2.8 2 0 0 2 2 2 1 Helix-turn-helix Cdd1 PF11731.3 gi|55378414|ref|YP_136265.1| - 0.0015 18.4 0.0 0.0041 17.0 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HTH_IclR PF09339.5 gi|55378414|ref|YP_136265.1| - 0.0017 17.9 0.1 0.013 15.0 0.2 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55378414|ref|YP_136265.1| - 0.0025 17.5 0.1 0.026 14.3 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|55378414|ref|YP_136265.1| - 0.0027 17.2 1.6 0.023 14.3 0.1 2.9 3 0 0 3 3 2 1 Homeodomain-like domain HRDC PF00570.18 gi|55378414|ref|YP_136265.1| - 0.0089 15.7 0.2 0.62 9.8 0.0 3.1 3 0 0 3 3 3 1 HRDC domain HHH PF00633.18 gi|55378414|ref|YP_136265.1| - 0.011 15.4 0.0 0.037 13.7 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_5 PF01022.15 gi|55378414|ref|YP_136265.1| - 0.012 15.2 0.0 0.033 13.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|55378414|ref|YP_136265.1| - 0.027 14.5 0.0 0.082 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|55378414|ref|YP_136265.1| - 0.029 14.5 4.1 0.23 11.6 0.0 3.3 3 0 0 3 3 2 0 Helix-turn-helix domain WhiA_N PF10298.4 gi|55378414|ref|YP_136265.1| - 0.03 14.1 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain MarR PF01047.17 gi|55378414|ref|YP_136265.1| - 0.034 13.8 0.4 0.22 11.2 0.1 2.5 3 0 0 3 3 2 0 MarR family Sigma70_r4 PF04545.11 gi|55378414|ref|YP_136265.1| - 0.036 13.3 1.3 2 7.7 0.1 3.1 3 0 0 3 3 2 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|55378414|ref|YP_136265.1| - 0.044 13.7 0.2 1.4 8.8 0.0 3.0 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain LAGLIDADG_2 PF03161.8 gi|55378414|ref|YP_136265.1| - 0.06 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 LAGLIDADG DNA endonuclease family FaeA PF04703.7 gi|55378414|ref|YP_136265.1| - 0.093 12.9 0.0 1.1 9.4 0.0 2.7 3 0 0 3 3 2 0 FaeA-like protein HTH_28 PF13518.1 gi|55378414|ref|YP_136265.1| - 0.094 12.7 0.7 2 8.4 0.1 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain DUF4332 PF14229.1 gi|55378414|ref|YP_136265.1| - 0.13 12.2 0.1 0.66 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) OrfB_Zn_ribbon PF07282.6 gi|55378414|ref|YP_136265.1| - 0.69 9.6 3.8 1.3 8.7 1.2 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|55378414|ref|YP_136265.1| - 4.6 7.3 6.8 3.9 7.5 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|55378414|ref|YP_136265.1| - 7.7 6.1 8.8 12 5.5 0.4 3.4 4 1 1 5 5 3 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|55378416|ref|YP_136266.1| - 0.025 14.0 1.5 0.85 9.1 0.1 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-H2C2_2 PF13465.1 gi|55378416|ref|YP_136266.1| - 0.03 14.6 0.1 7.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|55378416|ref|YP_136266.1| - 0.035 14.0 1.1 0.52 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|55378416|ref|YP_136266.1| - 0.045 13.7 0.6 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|55378416|ref|YP_136266.1| - 0.048 12.9 2.9 0.27 10.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.1 gi|55378416|ref|YP_136266.1| - 0.11 12.1 0.9 4.8 6.9 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|55378416|ref|YP_136266.1| - 0.14 12.3 3.2 5.6 7.1 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF1178 PF06676.6 gi|55378416|ref|YP_136266.1| - 0.19 11.9 1.8 5.6 7.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) Zn_Tnp_IS1 PF03811.8 gi|55378416|ref|YP_136266.1| - 0.27 10.7 1.8 13 5.3 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Prok-RING_1 PF14446.1 gi|55378416|ref|YP_136266.1| - 0.72 9.6 2.8 7.2 6.4 0.7 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-Nse PF11789.3 gi|55378416|ref|YP_136266.1| - 0.74 9.3 3.5 17 5.0 2.4 2.2 1 1 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit Prim_Zn_Ribbon PF08273.7 gi|55378416|ref|YP_136266.1| - 0.83 9.7 3.1 3.8 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|55378416|ref|YP_136266.1| - 1.3 9.4 3.4 16 5.9 0.3 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.1 gi|55378416|ref|YP_136266.1| - 2.2 8.0 4.5 4.2 7.1 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rieske PF00355.21 gi|55378417|ref|YP_136267.1| - 0.051 13.1 0.0 0.074 12.6 0.0 1.3 1 1 0 1 1 1 0 Rieske [2Fe-2S] domain Cytochrom_B_C PF00032.12 gi|55378418|ref|YP_136268.1| - 1.9 8.7 6.0 0.26 11.5 0.2 2.0 2 0 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD 2TM PF13239.1 gi|55378418|ref|YP_136268.1| - 3.5 7.7 5.3 4.6 7.3 0.0 2.3 2 1 0 2 2 2 0 2TM domain PcrB PF01884.12 gi|55378419|ref|YP_136269.1| - 1.7e-51 174.7 1.1 2e-51 174.4 0.8 1.0 1 0 0 1 1 1 1 PcrB family Secretogranin_V PF05281.6 gi|55378419|ref|YP_136269.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) AA_permease_2 PF13520.1 gi|55378420|ref|YP_136270.1| - 2.3e-47 161.5 38.4 3e-47 161.1 26.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|55378420|ref|YP_136270.1| - 5e-45 153.7 40.3 6.4e-45 153.3 27.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|55378420|ref|YP_136270.1| - 6.3e-05 23.1 0.6 0.00016 21.8 0.4 1.7 1 0 0 1 1 1 1 Universal stress protein family AA_permease_C PF13906.1 gi|55378420|ref|YP_136270.1| - 0.0018 18.0 5.2 0.0018 18.0 3.6 2.5 2 0 0 2 2 2 1 C-terminus of AA_permease TrkA_N PF02254.13 gi|55378421|ref|YP_136271.1| - 3.3e-11 43.1 0.2 4.2e-11 42.8 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain HTH_24 PF13412.1 gi|55378422|ref|YP_136272.1| - 1.5e-13 49.8 0.2 2.2e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55378422|ref|YP_136272.1| - 1.3e-11 43.8 1.4 2.4e-11 42.9 0.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|55378422|ref|YP_136272.1| - 1.8e-10 40.2 0.0 3.6e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|55378422|ref|YP_136272.1| - 6.7e-07 29.0 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|55378422|ref|YP_136272.1| - 2e-05 24.0 0.1 5.8e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|55378422|ref|YP_136272.1| - 5e-05 23.1 0.0 9.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|55378422|ref|YP_136272.1| - 0.00023 20.7 0.0 0.0003 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|55378422|ref|YP_136272.1| - 0.00037 20.5 0.1 0.00092 19.2 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|55378422|ref|YP_136272.1| - 0.0004 19.9 0.1 0.0008 18.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|55378422|ref|YP_136272.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|55378422|ref|YP_136272.1| - 0.0018 17.7 0.1 0.0032 16.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.1 gi|55378422|ref|YP_136272.1| - 0.0029 17.1 0.1 0.0055 16.2 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.6 gi|55378422|ref|YP_136272.1| - 0.003 17.2 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|55378422|ref|YP_136272.1| - 0.0035 17.0 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|55378422|ref|YP_136272.1| - 0.0043 17.0 0.0 0.0089 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|55378422|ref|YP_136272.1| - 0.0047 16.6 0.0 0.0093 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.14 gi|55378422|ref|YP_136272.1| - 0.0066 15.7 0.1 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.1 gi|55378422|ref|YP_136272.1| - 0.0099 15.0 0.1 0.018 14.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|55378422|ref|YP_136272.1| - 0.012 14.9 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 FUR PF01475.14 gi|55378422|ref|YP_136272.1| - 0.012 15.5 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_38 PF13936.1 gi|55378422|ref|YP_136272.1| - 0.014 14.9 0.2 0.028 13.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|55378422|ref|YP_136272.1| - 0.017 15.2 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|55378422|ref|YP_136272.1| - 0.034 13.5 0.1 0.074 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|55378422|ref|YP_136272.1| - 0.035 13.6 0.1 0.058 12.9 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.6 gi|55378422|ref|YP_136272.1| - 0.037 14.4 0.1 0.099 13.0 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal HTH_27 PF13463.1 gi|55378422|ref|YP_136272.1| - 0.037 14.3 0.0 0.065 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|55378422|ref|YP_136272.1| - 0.051 13.3 0.2 0.14 11.8 0.1 1.8 2 0 0 2 2 1 0 Ribonuclease R winged-helix domain EAP30 PF04157.11 gi|55378422|ref|YP_136272.1| - 0.052 12.6 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Tnp_Tc3_2 PF01498.13 gi|55378422|ref|YP_136272.1| - 0.055 13.5 0.3 0.086 12.9 0.2 1.3 1 0 0 1 1 1 0 Transposase HrcA_DNA-bdg PF03444.10 gi|55378422|ref|YP_136272.1| - 0.059 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_CodY PF08222.6 gi|55378422|ref|YP_136272.1| - 0.063 12.6 0.6 0.13 11.6 0.2 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain DUF2513 PF10711.4 gi|55378422|ref|YP_136272.1| - 0.068 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_1 PF00126.22 gi|55378422|ref|YP_136272.1| - 0.069 12.9 0.2 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|55378422|ref|YP_136272.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix SgrR_N PF12793.2 gi|55378422|ref|YP_136272.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term PaaX PF07848.7 gi|55378422|ref|YP_136272.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Put_DNA-bind_N PF06971.8 gi|55378422|ref|YP_136272.1| - 0.15 11.8 0.2 0.32 10.7 0.2 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus ABC_tran PF00005.22 gi|55378424|ref|YP_136274.1| - 2.6e-25 89.3 0.0 3.5e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378424|ref|YP_136274.1| - 4.3e-13 49.8 0.0 5.2e-09 36.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55378424|ref|YP_136274.1| - 0.012 15.1 0.1 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55378424|ref|YP_136274.1| - 0.026 14.4 0.3 0.49 10.3 0.2 2.3 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|55378424|ref|YP_136274.1| - 0.029 14.2 0.0 0.1 12.5 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|55378424|ref|YP_136274.1| - 0.059 12.5 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|55378424|ref|YP_136274.1| - 0.067 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|55378424|ref|YP_136274.1| - 0.13 13.0 0.1 0.29 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|55378424|ref|YP_136274.1| - 0.15 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|55378424|ref|YP_136274.1| - 0.15 12.3 0.2 0.23 11.7 0.1 1.1 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|55378424|ref|YP_136274.1| - 0.18 11.0 0.0 7.4 5.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.2 gi|55378425|ref|YP_136275.1| - 8e-27 93.7 10.7 1.8e-25 89.3 7.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|55378425|ref|YP_136275.1| - 1e-12 47.7 24.9 3.1e-12 46.1 17.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|55378425|ref|YP_136275.1| - 7e-09 35.1 15.1 9.1e-09 34.7 10.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|55378425|ref|YP_136275.1| - 6.4e-06 25.4 12.9 9.2e-06 24.9 8.9 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|55378425|ref|YP_136275.1| - 0.00029 20.1 6.3 0.00041 19.6 4.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein tRNA-synt_2 PF00152.15 gi|55378426|ref|YP_136276.1| - 5.5e-88 294.9 0.1 7.3e-88 294.5 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|55378426|ref|YP_136276.1| - 3.2e-15 55.7 0.3 5.4e-15 55.0 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|55378426|ref|YP_136276.1| - 0.0032 16.7 0.2 0.052 12.7 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) BOF PF04076.8 gi|55378426|ref|YP_136276.1| - 0.081 12.7 0.2 0.32 10.8 0.1 2.0 2 1 0 2 2 2 0 Bacterial OB fold (BOF) protein Bac_rhodopsin PF01036.13 gi|55378428|ref|YP_136278.1| - 4.9e-55 186.2 21.4 5.7e-55 186.0 14.8 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Aldo_ket_red PF00248.16 gi|55378429|ref|YP_136279.1| - 1.7e-50 171.4 0.0 2.1e-50 171.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_28 PF02636.12 gi|55378429|ref|YP_136279.1| - 0.033 13.5 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HTH_20 PF12840.2 gi|55378430|ref|YP_136280.1| - 0.058 13.2 0.0 0.31 10.8 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain PAS_3 PF08447.6 gi|55378431|ref|YP_136281.1| - 3.7e-36 123.1 0.1 2.1e-26 91.8 0.3 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|55378431|ref|YP_136281.1| - 2.4e-26 92.1 0.2 2.3e-16 60.0 0.0 3.4 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.5 gi|55378431|ref|YP_136281.1| - 1.9e-20 72.9 7.8 3.8e-13 49.4 0.0 4.2 4 0 0 4 4 4 3 PAS fold HTH_10 PF04967.7 gi|55378431|ref|YP_136281.1| - 3e-19 68.3 0.1 6.7e-19 67.2 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|55378431|ref|YP_136281.1| - 2.6e-16 59.3 0.0 9.9e-12 44.6 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|55378431|ref|YP_136281.1| - 1.1e-14 55.1 0.3 9.1e-14 52.1 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|55378431|ref|YP_136281.1| - 2.5e-05 23.9 0.0 0.00017 21.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.1 gi|55378431|ref|YP_136281.1| - 5.8e-05 23.0 0.0 0.00019 21.3 0.0 1.9 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|55378431|ref|YP_136281.1| - 0.00025 21.1 0.0 0.0012 18.9 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|55378431|ref|YP_136281.1| - 0.00061 19.9 0.1 0.002 18.2 0.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|55378431|ref|YP_136281.1| - 0.0027 17.6 0.1 0.047 13.7 0.0 3.1 3 0 0 3 3 3 1 PAS fold Sigma70_r4 PF04545.11 gi|55378431|ref|YP_136281.1| - 0.009 15.2 0.0 0.13 11.6 0.0 2.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|55378431|ref|YP_136281.1| - 0.03 14.1 0.7 0.084 12.6 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2238 PF09997.4 gi|55378432|ref|YP_136282.1| - 0.00032 20.0 3.3 0.0075 15.6 2.3 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF1279 PF06916.8 gi|55378432|ref|YP_136282.1| - 0.093 13.0 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1279) DUF457 PF04307.9 gi|55378433|ref|YP_136284.1| - 8.9e-07 28.3 12.6 8.9e-07 28.3 8.7 2.0 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4244 PF14029.1 gi|55378433|ref|YP_136284.1| - 6.2 5.9 7.0 1.4 8.0 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) Pcc1 PF09341.5 gi|55378435|ref|YP_136285.1| - 1.7e-16 59.9 0.2 2e-16 59.7 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|55378436|ref|YP_136286.1| - 3.4e-10 39.2 5.9 4e-10 38.9 4.1 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|55378436|ref|YP_136286.1| - 0.00061 19.4 0.3 0.00061 19.4 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|55378436|ref|YP_136286.1| - 0.00094 18.6 0.7 0.41 10.2 0.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|55378436|ref|YP_136286.1| - 0.0014 17.8 1.0 0.0019 17.4 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|55378436|ref|YP_136286.1| - 0.0018 17.4 2.1 0.023 13.8 0.1 2.0 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55378436|ref|YP_136286.1| - 0.0046 16.7 4.7 0.13 12.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|55378436|ref|YP_136286.1| - 0.0051 16.2 1.5 0.46 10.0 0.0 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|55378436|ref|YP_136286.1| - 0.012 15.3 0.8 0.042 13.6 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-CHCC PF10276.4 gi|55378436|ref|YP_136286.1| - 0.012 15.3 0.2 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger domain DZR PF12773.2 gi|55378436|ref|YP_136286.1| - 0.016 15.0 0.8 0.043 13.6 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|55378436|ref|YP_136286.1| - 0.019 14.4 1.4 1.5 8.4 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Sgf11 PF08209.6 gi|55378436|ref|YP_136286.1| - 0.022 14.0 2.6 0.61 9.4 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-AN1 PF01428.11 gi|55378436|ref|YP_136286.1| - 0.026 14.4 0.6 0.048 13.5 0.4 1.5 1 1 1 2 2 2 0 AN1-like Zinc finger Prok-RING_1 PF14446.1 gi|55378436|ref|YP_136286.1| - 0.029 14.0 1.6 0.086 12.5 1.2 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|55378436|ref|YP_136286.1| - 0.029 14.0 0.9 0.038 13.6 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.7 gi|55378436|ref|YP_136286.1| - 0.031 14.4 0.5 0.79 9.9 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|55378436|ref|YP_136286.1| - 0.036 13.5 4.5 0.38 10.2 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|55378436|ref|YP_136286.1| - 0.041 13.8 1.4 1.5 8.8 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|55378436|ref|YP_136286.1| - 0.049 13.2 3.8 0.79 9.4 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-ISL3 PF14690.1 gi|55378436|ref|YP_136286.1| - 0.05 13.6 1.4 0.28 11.2 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|55378436|ref|YP_136286.1| - 0.051 13.3 0.2 0.065 13.0 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-C2H2_4 PF13894.1 gi|55378436|ref|YP_136286.1| - 0.062 13.6 0.8 2.3 8.7 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNHCP PF12647.2 gi|55378436|ref|YP_136286.1| - 0.069 12.9 0.2 0.089 12.6 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain zf-RING_3 PF14369.1 gi|55378436|ref|YP_136286.1| - 0.08 12.9 2.0 0.13 12.2 1.4 1.4 1 0 0 1 1 1 0 zinc-finger Zn_ribbon_recom PF13408.1 gi|55378436|ref|YP_136286.1| - 0.088 13.0 1.4 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain TFIIS_C PF01096.13 gi|55378436|ref|YP_136286.1| - 0.089 12.4 1.8 4.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Spt4 PF06093.8 gi|55378436|ref|YP_136286.1| - 0.1 12.4 0.1 0.12 12.3 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger C1_1 PF00130.17 gi|55378436|ref|YP_136286.1| - 0.12 12.1 0.5 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.1 gi|55378436|ref|YP_136286.1| - 0.17 11.0 1.6 0.3 10.3 1.2 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|55378436|ref|YP_136286.1| - 0.21 11.2 6.0 10 5.8 4.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|55378436|ref|YP_136286.1| - 0.28 11.5 1.3 0.81 10.0 0.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Thioredoxin_4 PF13462.1 gi|55378436|ref|YP_136286.1| - 0.31 11.0 1.8 0.52 10.2 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin zinc_ribbon_5 PF13719.1 gi|55378436|ref|YP_136286.1| - 0.32 10.6 6.4 17 5.0 4.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|55378436|ref|YP_136286.1| - 0.61 10.5 3.1 9.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|55378436|ref|YP_136286.1| - 0.7 9.8 5.2 5.7 6.9 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|55378436|ref|YP_136286.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|55378436|ref|YP_136286.1| - 1.9 7.6 6.8 6.4 5.9 1.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|55378436|ref|YP_136286.1| - 5.7 6.7 7.4 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|55378436|ref|YP_136286.1| - 6.1 6.6 7.3 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L37ae PF01780.14 gi|55378437|ref|YP_136287.1| - 7.7e-34 115.4 1.7 8.8e-34 115.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|55378437|ref|YP_136287.1| - 0.0031 17.2 1.4 0.0031 17.2 1.0 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|55378437|ref|YP_136287.1| - 0.0095 15.7 3.3 1 9.2 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin zf-H2C2_2 PF13465.1 gi|55378437|ref|YP_136287.1| - 0.011 16.0 1.2 0.43 10.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|55378437|ref|YP_136287.1| - 0.013 15.1 0.4 0.017 14.8 0.3 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain OrfB_Zn_ribbon PF07282.6 gi|55378437|ref|YP_136287.1| - 0.019 14.5 0.7 0.031 13.9 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|55378437|ref|YP_136287.1| - 0.036 13.5 1.9 0.12 11.8 1.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55378437|ref|YP_136287.1| - 0.061 13.2 2.9 0.25 11.2 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.6 gi|55378437|ref|YP_136287.1| - 0.12 12.4 0.4 0.12 12.4 0.3 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|55378437|ref|YP_136287.1| - 0.52 9.5 5.0 2.9 7.2 3.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|55378437|ref|YP_136287.1| - 1.3 9.1 4.1 5.1 7.2 2.9 2.0 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|55378437|ref|YP_136287.1| - 1.4 9.3 4.4 6.8 7.2 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-RING_3 PF14369.1 gi|55378437|ref|YP_136287.1| - 2.4 8.2 6.1 0.47 10.4 0.4 2.3 2 1 1 3 3 2 0 zinc-finger DUF2103 PF09876.4 gi|55378439|ref|YP_136289.1| - 2.5e-44 149.2 0.3 4.7e-44 148.3 0.2 1.5 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) GHMP_kinases_N PF00288.21 gi|55378440|ref|YP_136290.1| - 5.2e-09 36.0 4.4 1.9e-08 34.2 2.1 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|55378440|ref|YP_136290.1| - 0.014 15.5 1.1 0.21 11.7 0.0 2.8 3 0 0 3 3 3 0 GHMP kinases C terminal UPF0175 PF03683.8 gi|55378441|ref|YP_136291.1| - 1.3e-16 59.7 1.7 2e-16 59.1 1.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|55378441|ref|YP_136291.1| - 0.0012 18.5 1.0 0.0012 18.5 0.7 2.7 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family HTH_psq PF05225.11 gi|55378441|ref|YP_136291.1| - 0.22 11.0 1.1 0.9 9.1 0.2 2.1 1 1 1 2 2 2 0 helix-turn-helix, Psq domain NYN_YacP PF05991.6 gi|55378442|ref|YP_136292.1| - 0.016 14.9 0.1 0.021 14.5 0.1 1.2 1 0 0 1 1 1 0 YacP-like NYN domain AA_kinase PF00696.23 gi|55378442|ref|YP_136292.1| - 0.038 13.5 0.1 0.044 13.3 0.1 1.2 1 0 0 1 1 1 0 Amino acid kinase family PIN_4 PF13638.1 gi|55378442|ref|YP_136292.1| - 0.087 12.9 0.5 1.5 8.9 0.3 2.1 1 1 0 1 1 1 0 PIN domain OrfB_IS605 PF01385.14 gi|55378443|ref|YP_136293.1| - 7.8e-61 205.3 0.0 1e-60 204.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|55378443|ref|YP_136293.1| - 3.8e-19 68.1 0.5 8.7e-19 66.9 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF772 PF05598.6 gi|55378444|ref|YP_136294.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase domain (DUF772) Prefoldin_2 PF01920.15 gi|55378445|ref|YP_136295.1| - 9e-27 92.9 23.4 1e-26 92.7 16.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit AAA_27 PF13514.1 gi|55378445|ref|YP_136295.1| - 0.00032 18.5 11.7 0.00039 18.2 8.1 1.0 1 0 0 1 1 1 1 AAA domain FlaC_arch PF05377.6 gi|55378445|ref|YP_136295.1| - 0.0019 18.0 4.9 0.0019 18.0 3.4 2.4 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) Sigma70_ner PF04546.8 gi|55378445|ref|YP_136295.1| - 0.0053 16.4 2.8 0.0053 16.4 2.0 2.0 1 1 1 2 2 2 1 Sigma-70, non-essential region Fib_alpha PF08702.5 gi|55378445|ref|YP_136295.1| - 0.0075 16.4 7.5 0.42 10.7 1.2 2.0 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF3584 PF12128.3 gi|55378445|ref|YP_136295.1| - 0.0079 13.5 13.0 0.01 13.2 9.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) BLOC1_2 PF10046.4 gi|55378445|ref|YP_136295.1| - 0.0097 16.0 12.5 0.31 11.1 1.3 2.1 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_I PF06008.9 gi|55378445|ref|YP_136295.1| - 0.038 13.3 17.2 0.18 11.1 2.0 2.1 1 1 0 2 2 2 0 Laminin Domain I FlgN PF05130.7 gi|55378445|ref|YP_136295.1| - 0.04 14.1 11.0 0.057 13.6 7.6 1.2 1 0 0 1 1 1 0 FlgN protein Prefoldin PF02996.12 gi|55378445|ref|YP_136295.1| - 0.045 13.3 18.6 2 8.0 12.8 2.4 1 1 0 1 1 1 0 Prefoldin subunit Radical_SAM_N PF08497.5 gi|55378445|ref|YP_136295.1| - 0.065 12.1 2.0 0.079 11.8 1.4 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal PRP1_N PF06424.7 gi|55378445|ref|YP_136295.1| - 0.085 13.1 5.7 0.13 12.6 4.0 1.3 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal CDC37_N PF03234.9 gi|55378445|ref|YP_136295.1| - 0.12 12.6 10.0 0.17 12.2 7.0 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding ING PF12998.2 gi|55378445|ref|YP_136295.1| - 0.12 12.6 12.6 0.16 12.2 8.3 1.5 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Cortex-I_coil PF09304.5 gi|55378445|ref|YP_136295.1| - 0.15 12.0 19.7 0.68 9.9 3.6 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil DAGK_cat PF00781.19 gi|55378445|ref|YP_136295.1| - 0.16 11.4 2.6 3.3 7.1 0.2 2.1 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain CENP-F_leu_zip PF10473.4 gi|55378445|ref|YP_136295.1| - 0.16 11.7 23.2 0.58 10.0 4.4 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3610 PF12272.3 gi|55378445|ref|YP_136295.1| - 0.18 11.4 1.0 0.27 10.8 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3610) Baculo_PEP_C PF04513.7 gi|55378445|ref|YP_136295.1| - 0.19 11.5 9.9 0.33 10.7 6.9 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.7 gi|55378445|ref|YP_136295.1| - 0.2 11.4 21.2 0.37 10.5 14.7 1.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.7 gi|55378445|ref|YP_136295.1| - 0.25 11.7 0.2 0.25 11.7 0.1 2.5 2 1 0 2 2 2 0 SlyX SLY PF12485.3 gi|55378445|ref|YP_136295.1| - 0.36 11.0 2.5 0.68 10.1 1.7 1.5 1 1 0 1 1 1 0 Lymphocyte signaling adaptor protein RNA_pol_Rpb1_1 PF04997.7 gi|55378445|ref|YP_136295.1| - 0.39 9.9 3.3 0.47 9.6 2.3 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 1 AATF-Che1 PF13339.1 gi|55378445|ref|YP_136295.1| - 0.4 10.8 7.2 3 8.0 0.8 2.2 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor WXG100 PF06013.7 gi|55378445|ref|YP_136295.1| - 0.42 10.6 14.1 2.9 7.9 3.6 2.9 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.17 gi|55378445|ref|YP_136295.1| - 0.44 10.5 16.1 0.35 10.9 1.8 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|55378445|ref|YP_136295.1| - 0.45 10.2 11.1 0.83 9.4 7.7 1.5 1 1 0 1 1 1 0 Laminin Domain II EzrA PF06160.7 gi|55378445|ref|YP_136295.1| - 0.56 8.3 16.2 0.84 7.7 11.2 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Syntaxin-6_N PF09177.6 gi|55378445|ref|YP_136295.1| - 0.63 10.4 13.5 0.13 12.6 1.2 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF4164 PF13747.1 gi|55378445|ref|YP_136295.1| - 1 9.5 15.1 0.073 13.2 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF2408 PF10303.4 gi|55378445|ref|YP_136295.1| - 1.1 9.4 11.0 14 5.8 7.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Sec8_exocyst PF04048.9 gi|55378445|ref|YP_136295.1| - 1.1 8.8 9.3 0.48 10.0 1.4 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Viral_P18 PF04521.8 gi|55378445|ref|YP_136295.1| - 1.4 8.4 6.3 1.7 8.0 0.6 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein FUSC PF04632.7 gi|55378445|ref|YP_136295.1| - 1.4 7.2 4.0 1.8 6.8 2.7 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family ERM PF00769.14 gi|55378445|ref|YP_136295.1| - 1.4 8.3 23.0 2.6 7.5 15.9 1.3 1 1 0 1 1 1 0 Ezrin/radixin/moesin family PilJ PF13675.1 gi|55378445|ref|YP_136295.1| - 1.5 9.1 13.0 0.79 10.0 0.9 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term NPV_P10 PF05531.7 gi|55378445|ref|YP_136295.1| - 1.5 9.1 10.3 1.8 8.8 0.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2383 PF09537.5 gi|55378445|ref|YP_136295.1| - 1.5 9.0 12.4 42 4.4 8.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) Spc24 PF08286.6 gi|55378445|ref|YP_136295.1| - 1.8 8.2 21.0 1.5 8.5 3.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4407 PF14362.1 gi|55378445|ref|YP_136295.1| - 1.9 7.3 14.3 2.7 6.8 0.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Fzo_mitofusin PF04799.8 gi|55378445|ref|YP_136295.1| - 1.9 7.8 13.3 2.1 7.6 2.5 2.1 1 1 1 2 2 2 0 fzo-like conserved region Med10 PF09748.4 gi|55378445|ref|YP_136295.1| - 1.9 8.2 7.5 61 3.4 5.2 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex V-SNARE PF05008.10 gi|55378445|ref|YP_136295.1| - 2 8.6 17.3 2.7 8.2 3.5 2.2 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus TraF_2 PF13729.1 gi|55378445|ref|YP_136295.1| - 2.6 6.7 7.6 2 7.1 0.2 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein P4Ha_N PF08336.6 gi|55378445|ref|YP_136295.1| - 2.8 7.7 8.2 1.9 8.2 1.1 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Vps51 PF08700.6 gi|55378445|ref|YP_136295.1| - 2.9 7.7 12.4 0.26 11.1 0.9 2.2 2 0 0 2 2 2 0 Vps51/Vps67 DUF3347 PF11827.3 gi|55378445|ref|YP_136295.1| - 3 7.8 6.8 4.2 7.3 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) XhlA PF10779.4 gi|55378445|ref|YP_136295.1| - 3.3 7.6 14.4 0.2 11.6 1.4 2.2 2 0 0 2 2 2 0 Haemolysin XhlA FlxA PF14282.1 gi|55378445|ref|YP_136295.1| - 3.6 7.5 20.6 0.58 10.1 3.4 2.2 2 0 0 2 2 2 0 FlxA-like protein Reo_sigmaC PF04582.7 gi|55378445|ref|YP_136295.1| - 3.8 6.5 4.8 12 4.9 3.3 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein bZIP_1 PF00170.16 gi|55378445|ref|YP_136295.1| - 3.9 7.5 15.3 0.18 11.8 2.2 2.2 2 0 0 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|55378445|ref|YP_136295.1| - 4.6 6.7 29.6 24 4.4 20.5 1.8 1 1 0 1 1 1 0 IncA protein DUF1664 PF07889.7 gi|55378445|ref|YP_136295.1| - 5.1 6.9 11.0 1.2 8.8 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF935 PF06074.7 gi|55378445|ref|YP_136295.1| - 5.2 5.6 10.8 6.5 5.3 7.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) AAA_13 PF13166.1 gi|55378445|ref|YP_136295.1| - 5.3 5.3 14.5 18 3.6 10.1 1.6 1 1 0 1 1 1 0 AAA domain DUF2681 PF10883.3 gi|55378445|ref|YP_136295.1| - 5.3 7.3 16.4 0.92 9.7 3.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) AF0941-like PF14591.1 gi|55378445|ref|YP_136295.1| - 5.4 7.1 14.2 1.5e+02 2.4 9.2 2.4 1 1 0 1 1 1 0 AF0941-like DUF4657 PF15552.1 gi|55378445|ref|YP_136295.1| - 5.5 6.1 11.0 6.8 5.8 7.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) GCN5L1 PF06320.8 gi|55378445|ref|YP_136295.1| - 6.1 6.7 10.4 10 5.9 1.4 2.1 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) HSP70 PF00012.15 gi|55378445|ref|YP_136295.1| - 6.5 4.5 10.6 7.8 4.2 7.3 1.0 1 0 0 1 1 1 0 Hsp70 protein Tropomyosin_1 PF12718.2 gi|55378445|ref|YP_136295.1| - 6.8 6.5 27.5 1.1 9.1 6.5 2.0 1 1 1 2 2 2 0 Tropomyosin like DUF3450 PF11932.3 gi|55378445|ref|YP_136295.1| - 7.3 5.7 22.6 2.1 7.5 6.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF972 PF06156.8 gi|55378445|ref|YP_136295.1| - 7.6 6.9 17.2 9 6.7 3.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|55378445|ref|YP_136295.1| - 8.8 4.0 17.7 85 0.7 12.4 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family SseC PF04888.7 gi|55378445|ref|YP_136295.1| - 8.8 5.5 16.3 0.27 10.5 1.7 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Prominin PF05478.6 gi|55378445|ref|YP_136295.1| - 9.6 3.5 8.8 2.6 5.4 0.4 1.8 1 1 1 2 2 2 0 Prominin RVT_2 PF07727.9 gi|55378446|ref|YP_136296.1| - 0.035 13.0 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) DUF3194 PF11419.3 gi|55378446|ref|YP_136296.1| - 0.039 14.1 3.7 0.048 13.8 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) DUF1510 PF07423.6 gi|55378448|ref|YP_136298.1| - 0.081 12.2 7.3 0.17 11.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) DNase-RNase PF02577.9 gi|55378449|ref|YP_136299.1| - 8.4e-39 131.8 0.0 1.1e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HAD_2 PF13419.1 gi|55378450|ref|YP_136300.1| - 1e-17 64.9 0.3 1.3e-17 64.6 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55378450|ref|YP_136300.1| - 5.4e-11 42.0 0.0 9.6e-11 41.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|55378450|ref|YP_136300.1| - 2.1e-05 25.0 0.1 0.00039 20.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|55378450|ref|YP_136300.1| - 0.026 14.7 0.1 0.041 14.0 0.1 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PAS_9 PF13426.1 gi|55378451|ref|YP_136301.1| - 9.1e-20 70.9 0.0 4.6e-11 43.0 0.1 3.0 2 0 0 2 2 2 2 PAS domain HTH_10 PF04967.7 gi|55378451|ref|YP_136301.1| - 7.7e-19 67.0 0.0 1.6e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|55378451|ref|YP_136301.1| - 2.2e-14 54.2 3.9 1.6e-13 51.3 0.2 3.3 2 1 0 2 2 2 1 GAF domain PAS PF00989.19 gi|55378451|ref|YP_136301.1| - 4.2e-14 52.2 0.7 8.1e-09 35.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|55378451|ref|YP_136301.1| - 2.5e-09 37.1 11.0 1.6e-05 24.8 0.1 4.6 5 1 0 5 5 4 2 PAS fold PAS_8 PF13188.1 gi|55378451|ref|YP_136301.1| - 8.8e-09 34.9 0.0 0.0014 18.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|55378451|ref|YP_136301.1| - 2.5e-07 30.8 1.1 0.0022 18.0 0.1 2.7 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|55378451|ref|YP_136301.1| - 5.5e-05 23.3 2.6 0.00037 20.6 0.1 3.4 3 1 0 3 3 2 1 GAF domain HTH_5 PF01022.15 gi|55378451|ref|YP_136301.1| - 0.0015 18.1 0.0 0.0036 16.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|55378451|ref|YP_136301.1| - 0.0019 17.4 0.0 0.006 15.8 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_3 PF08447.6 gi|55378451|ref|YP_136301.1| - 0.018 15.0 0.0 0.24 11.4 0.0 2.6 2 0 0 2 2 2 0 PAS fold GerE PF00196.14 gi|55378451|ref|YP_136301.1| - 0.022 14.0 0.0 0.13 11.5 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family MAT1 PF06391.8 gi|55378451|ref|YP_136301.1| - 0.023 14.3 3.6 0.73 9.3 0.1 2.5 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 HTH_24 PF13412.1 gi|55378451|ref|YP_136301.1| - 0.034 13.5 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DsbC_N PF10411.4 gi|55378451|ref|YP_136301.1| - 0.12 11.6 0.0 0.32 10.2 0.0 1.7 1 0 0 1 1 1 0 Disulfide bond isomerase protein N-terminus L31 PF09784.4 gi|55378451|ref|YP_136301.1| - 0.64 10.1 2.2 19 5.3 0.6 2.9 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L31 Terpene_synth_C PF03936.11 gi|55378453|ref|YP_136303.1| - 0.0011 18.2 0.1 0.0018 17.5 0.1 1.3 1 0 0 1 1 1 1 Terpene synthase family, metal binding domain ApoC-I PF04691.7 gi|55378453|ref|YP_136303.1| - 0.082 12.6 0.7 0.28 10.8 0.3 2.0 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) HMGL-like PF00682.14 gi|55378454|ref|YP_136304.1| - 1.7e-58 198.1 0.2 3.6e-58 197.0 0.1 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|55378454|ref|YP_136304.1| - 7.6e-30 103.4 2.8 1.8e-29 102.2 1.9 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF192 PF02643.10 gi|55378456|ref|YP_136305.1| - 2.6e-21 75.3 0.0 3.2e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HNH PF01844.18 gi|55378455|ref|YP_136306.1| - 0.027 14.3 2.0 0.065 13.1 1.4 1.7 1 0 0 1 1 1 0 HNH endonuclease C1_1 PF00130.17 gi|55378455|ref|YP_136306.1| - 0.1 12.3 0.4 0.1 12.3 0.3 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF968 PF06147.6 gi|55378455|ref|YP_136306.1| - 0.12 12.2 1.1 0.19 11.6 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF968) DUF2387 PF09526.5 gi|55378455|ref|YP_136306.1| - 0.13 12.1 0.6 0.31 10.9 0.1 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) HATPase_c PF02518.21 gi|55378457|ref|YP_136307.1| - 6.7e-12 45.1 0.0 1.4e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|55378457|ref|YP_136307.1| - 5.1e-05 22.9 0.0 8.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|55378457|ref|YP_136307.1| - 0.0016 18.4 0.3 0.0032 17.4 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Myosin_N PF02736.14 gi|55378457|ref|YP_136307.1| - 0.066 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain DUF1049 PF06305.6 gi|55378457|ref|YP_136307.1| - 0.19 11.2 0.8 0.42 10.1 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) GATase PF00117.23 gi|55378458|ref|YP_136308.1| - 5.8e-36 123.7 0.0 6.5e-36 123.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55378458|ref|YP_136308.1| - 4.6e-14 52.3 1.4 5.6e-13 48.8 0.1 2.7 2 1 0 2 2 2 1 Peptidase C26 DUF2070 PF09843.4 gi|55378459|ref|YP_136309.1| - 5.5e-57 192.1 0.1 8.6e-57 191.4 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF4131 PF13567.1 gi|55378459|ref|YP_136309.1| - 0.49 9.7 0.0 0.49 9.7 0.0 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) AAA_3 PF07726.6 gi|55378460|ref|YP_136310.1| - 1.4e-65 218.7 0.1 2.5e-65 217.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55378460|ref|YP_136310.1| - 7.3e-16 58.1 0.0 3.3e-15 56.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|55378460|ref|YP_136310.1| - 4.9e-07 30.0 0.0 1.3e-06 28.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|55378460|ref|YP_136310.1| - 6.3e-05 22.5 0.0 0.0015 18.0 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|55378460|ref|YP_136310.1| - 0.00016 20.6 0.0 0.0047 15.7 0.0 2.3 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|55378460|ref|YP_136310.1| - 0.00089 18.4 0.1 0.94 8.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|55378460|ref|YP_136310.1| - 0.0022 17.0 0.0 0.016 14.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF3071 PF11268.3 gi|55378460|ref|YP_136310.1| - 0.011 15.4 0.5 0.024 14.3 0.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) AAA_2 PF07724.9 gi|55378460|ref|YP_136310.1| - 0.053 13.4 0.0 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) GtrA PF04138.9 gi|55378461|ref|YP_136311.1| - 3.6e-20 72.0 8.6 4.2e-20 71.8 6.0 1.0 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.18 gi|55378462|ref|YP_136312.1| - 7.8e-35 120.5 0.1 1.1e-34 120.0 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55378462|ref|YP_136312.1| - 1.2e-08 34.6 0.1 1.7e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|55378462|ref|YP_136312.1| - 0.0031 16.9 0.1 0.0064 15.9 0.0 1.5 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF1501 PF07394.7 gi|55378462|ref|YP_136312.1| - 0.038 12.8 0.1 0.074 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Sulfatase_C PF14707.1 gi|55378462|ref|YP_136312.1| - 0.17 12.1 0.1 0.44 10.8 0.0 1.6 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase DUF229 PF02995.12 gi|55378462|ref|YP_136312.1| - 0.26 9.6 0.0 0.32 9.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Acetyltransf_1 PF00583.19 gi|55378463|ref|YP_136313.1| - 3.1e-13 49.5 0.1 4.6e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|55378463|ref|YP_136313.1| - 5e-08 32.5 0.0 7.9e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|55378463|ref|YP_136313.1| - 3.1e-07 30.4 0.0 4.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55378463|ref|YP_136313.1| - 7.7e-05 22.7 0.1 8.6e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55378463|ref|YP_136313.1| - 0.00028 20.7 0.3 0.00037 20.3 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55378463|ref|YP_136313.1| - 0.00053 19.8 0.1 0.00065 19.6 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55378463|ref|YP_136313.1| - 0.044 13.7 0.0 0.076 12.9 0.0 1.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|55378463|ref|YP_136313.1| - 0.057 12.7 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF3749 PF12568.3 gi|55378463|ref|YP_136313.1| - 0.058 12.9 0.1 0.092 12.3 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ABC1 PF03109.11 gi|55378464|ref|YP_136314.1| - 1.9e-07 31.0 0.2 4.6e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|55378464|ref|YP_136314.1| - 0.0032 17.2 0.2 0.012 15.3 0.2 1.7 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|55378464|ref|YP_136314.1| - 0.063 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain WaaY PF06176.6 gi|55378464|ref|YP_136314.1| - 0.083 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) HSP20 PF00011.16 gi|55378465|ref|YP_136315.1| - 1.9e-11 43.6 0.0 2.2e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|55378465|ref|YP_136315.1| - 0.002 17.8 0.2 0.028 14.0 0.3 2.0 2 0 0 2 2 2 1 GvpH GIDE PF12483.3 gi|55378466|ref|YP_136316.1| - 2.6e-08 33.3 0.8 7e-08 31.9 0.6 1.8 1 1 0 1 1 1 1 E3 Ubiquitin ligase DUF3592 PF12158.3 gi|55378466|ref|YP_136316.1| - 0.00015 21.6 0.0 0.00057 19.6 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) MoCF_biosynth PF00994.19 gi|55378467|ref|YP_136317.1| - 5.8e-15 54.9 0.0 1.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_N PF03453.12 gi|55378467|ref|YP_136317.1| - 9.1e-06 25.1 0.1 0.064 12.6 0.0 2.5 1 1 1 2 2 2 2 MoeA N-terminal region (domain I and II) MoeA_C PF03454.10 gi|55378467|ref|YP_136317.1| - 5e-05 23.1 0.0 0.00013 21.8 0.0 1.8 1 1 0 1 1 1 1 MoeA C-terminal region (domain IV) HAD_2 PF13419.1 gi|55378468|ref|YP_136318.1| - 2e-27 96.5 0.2 2.3e-27 96.3 0.1 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55378468|ref|YP_136318.1| - 2.3e-07 31.4 0.0 6.5e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|55378468|ref|YP_136318.1| - 7.7e-05 22.9 0.1 0.00011 22.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55378468|ref|YP_136318.1| - 0.0091 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Pterin_4a PF01329.14 gi|55378469|ref|YP_136319.1| - 3.1e-24 84.5 0.0 3.2e-24 84.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|55378469|ref|YP_136319.1| - 0.0081 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Translation-initiation factor 2 GlutR_N PF05201.10 gi|161723235|ref|YP_136320.2| - 6.6e-35 119.9 0.1 1.7e-34 118.5 0.1 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|161723235|ref|YP_136320.2| - 1.6e-23 83.2 0.4 3.7e-23 82.1 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|161723235|ref|YP_136320.2| - 4.2e-22 78.0 2.8 1e-21 76.7 1.9 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain NAD_binding_2 PF03446.10 gi|161723235|ref|YP_136320.2| - 0.00019 21.3 2.3 0.00082 19.2 0.1 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|161723235|ref|YP_136320.2| - 0.0031 16.5 0.4 0.0069 15.4 0.3 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF4476 PF14771.1 gi|161723235|ref|YP_136320.2| - 0.035 14.1 0.1 0.069 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) NAD_binding_7 PF13241.1 gi|161723235|ref|YP_136320.2| - 0.058 13.6 1.7 0.1 12.8 0.1 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding Response_reg PF00072.19 gi|161723235|ref|YP_136320.2| - 0.061 13.3 0.4 20 5.2 0.0 3.0 3 0 0 3 3 3 0 Response regulator receiver domain zf-C4H2 PF10146.4 gi|161723235|ref|YP_136320.2| - 0.078 12.9 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein F420_oxidored PF03807.12 gi|161723235|ref|YP_136320.2| - 0.29 11.5 3.4 0.32 11.4 0.3 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|161723235|ref|YP_136320.2| - 2.9 7.9 10.4 0.21 11.6 0.7 3.0 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|55378471|ref|YP_136321.1| - 9.7e-22 77.1 0.0 1.3e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding DZR PF12773.2 gi|55378473|ref|YP_136323.1| - 0.00073 19.3 0.8 0.00076 19.2 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55378473|ref|YP_136323.1| - 0.00095 18.3 1.8 0.0013 17.8 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Cas_CXXC_CXXC PF09706.5 gi|55378473|ref|YP_136323.1| - 0.09 12.9 0.2 0.77 9.9 0.0 2.0 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) zinc_ribbon_2 PF13240.1 gi|55378473|ref|YP_136323.1| - 0.22 11.0 3.5 0.32 10.5 2.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CSD PF00313.17 gi|55378475|ref|YP_136325.1| - 1.6e-20 72.6 0.2 1.7e-20 72.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|55378475|ref|YP_136325.1| - 0.0043 16.7 1.9 0.0063 16.2 1.3 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|55378475|ref|YP_136325.1| - 0.015 14.7 2.6 0.022 14.2 1.8 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|55378475|ref|YP_136325.1| - 0.039 13.8 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF CSD PF00313.17 gi|55378476|ref|YP_136326.1| - 1.5e-21 75.9 0.1 1.6e-21 75.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|55378476|ref|YP_136326.1| - 0.0074 15.9 3.2 0.014 15.0 2.2 1.6 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|55378476|ref|YP_136326.1| - 0.008 16.0 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|55378476|ref|YP_136326.1| - 0.041 13.3 2.4 0.063 12.7 1.7 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Prenyltransf PF01255.14 gi|55378477|ref|YP_136327.1| - 3.4e-72 242.2 0.0 4.8e-72 241.7 0.0 1.2 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Acetyltransf_1 PF00583.19 gi|55378477|ref|YP_136327.1| - 0.12 12.3 0.1 9.8 6.2 0.0 2.5 1 1 1 2 2 2 0 Acetyltransferase (GNAT) family Prenyltransf PF01255.14 gi|55378478|ref|YP_136328.1| - 2.8e-11 42.9 0.5 3e-11 42.8 0.4 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|55378479|ref|YP_136329.1| - 4.6e-63 212.3 17.8 4.6e-63 212.3 12.3 2.2 2 0 0 2 2 2 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.19 gi|55378480|ref|YP_136330.1| - 7e-14 51.6 0.0 9.4e-14 51.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55378480|ref|YP_136330.1| - 2.2e-09 37.3 0.0 3e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55378480|ref|YP_136330.1| - 9.2e-08 32.2 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55378480|ref|YP_136330.1| - 5.7e-06 26.2 0.1 9.4e-06 25.5 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55378480|ref|YP_136330.1| - 9.5e-06 25.2 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|55378480|ref|YP_136330.1| - 0.0046 17.1 0.0 0.005 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55378480|ref|YP_136330.1| - 0.011 15.7 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55378480|ref|YP_136330.1| - 0.024 14.5 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55378480|ref|YP_136330.1| - 0.078 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Toprim_4 PF13662.1 gi|55378481|ref|YP_136331.1| - 1e-09 38.2 0.9 1.5e-08 34.5 0.3 2.6 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|55378481|ref|YP_136331.1| - 0.078 12.9 0.4 0.95 9.4 0.3 2.8 1 1 0 1 1 1 0 Toprim domain Nitro_FeMo-Co PF02579.12 gi|55378481|ref|YP_136331.1| - 3.1 7.9 6.9 1.2 9.2 0.1 3.2 4 0 0 4 4 4 0 Dinitrogenase iron-molybdenum cofactor AP_endonuc_2 PF01261.19 gi|55378482|ref|YP_136332.1| - 1.8e-19 69.9 2.1 1.1e-18 67.3 1.0 2.3 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel tRNA_bind PF01588.15 gi|55378483|ref|YP_136333.1| - 2.9e-19 68.6 0.0 3.4e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3311 PF11755.3 gi|55378484|ref|YP_136334.1| - 7.3e-13 47.8 13.8 8.6e-13 47.6 9.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4305 PF14146.1 gi|55378484|ref|YP_136334.1| - 0.032 13.9 1.0 0.21 11.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4305) DUF2975 PF11188.3 gi|55378484|ref|YP_136334.1| - 0.73 9.5 5.6 0.8 9.4 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3154 PF11351.3 gi|55378484|ref|YP_136334.1| - 2.7 7.7 7.1 3.2 7.5 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) FA_desaturase PF00487.19 gi|55378484|ref|YP_136334.1| - 5.1 6.4 11.2 5.2 6.4 7.7 1.0 1 0 0 1 1 1 0 Fatty acid desaturase SSF PF00474.12 gi|55378485|ref|YP_136335.1| - 1.2e-41 142.7 26.7 1.6e-41 142.3 18.5 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2892 PF11127.3 gi|55378486|ref|YP_136336.1| - 7e-12 44.9 0.1 8.7e-12 44.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1887 PF09002.6 gi|55378487|ref|YP_136337.1| - 0.0022 16.4 0.0 0.0029 16.0 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1887) DUF3567 PF12091.3 gi|55378487|ref|YP_136337.1| - 0.053 13.4 0.1 0.15 12.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) tRNA-synt_1 PF00133.17 gi|55378488|ref|YP_136338.1| - 6.9e-129 430.5 0.0 5.6e-128 427.5 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|55378488|ref|YP_136338.1| - 3.1e-37 127.6 0.1 7.5e-37 126.4 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|55378488|ref|YP_136338.1| - 1.6e-23 83.0 0.8 2.4e-11 42.9 0.1 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|55378488|ref|YP_136338.1| - 3.7e-06 26.3 0.0 9e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|55378488|ref|YP_136338.1| - 4e-05 22.4 0.0 0.0013 17.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|55378488|ref|YP_136338.1| - 0.00065 18.9 0.0 0.34 10.0 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-dskA_traR PF01258.12 gi|55378488|ref|YP_136338.1| - 0.0044 16.7 0.3 0.0044 16.7 0.2 3.1 4 0 0 4 4 3 1 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|55378488|ref|YP_136338.1| - 0.0088 15.8 0.3 0.21 11.4 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|55378488|ref|YP_136338.1| - 0.5 10.1 3.7 3.1 7.5 0.2 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|55378488|ref|YP_136338.1| - 0.5 10.1 5.6 1.2 8.9 0.4 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|55378488|ref|YP_136338.1| - 1.2 9.1 6.5 13 5.7 2.7 3.2 2 1 0 2 2 2 0 Zinc ribbon domain Gluconate_2-dh3 PF13618.1 gi|55378489|ref|YP_136339.1| - 0.016 15.3 0.2 0.016 15.3 0.1 1.0 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 FliT PF05400.8 gi|55378489|ref|YP_136339.1| - 0.27 11.6 2.6 0.31 11.4 1.8 1.2 1 0 0 1 1 1 0 Flagellar protein FliT DUF1405 PF07187.6 gi|55378490|ref|YP_136340.1| - 6.5e-53 178.8 14.3 8e-53 178.5 9.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SOR_SNZ PF01680.12 gi|55378491|ref|YP_136341.1| - 4.1e-96 320.5 5.9 5.8e-96 320.0 4.1 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|55378491|ref|YP_136341.1| - 3.7e-12 45.8 1.4 2.8e-06 26.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|55378491|ref|YP_136341.1| - 8.1e-05 21.5 1.7 0.011 14.6 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|55378491|ref|YP_136341.1| - 0.0012 17.8 0.4 0.33 9.8 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|55378491|ref|YP_136341.1| - 0.0038 16.3 0.1 0.065 12.2 0.0 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|55378491|ref|YP_136341.1| - 0.045 13.1 0.5 0.59 9.4 0.0 2.6 2 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MS_channel PF00924.13 gi|55378492|ref|YP_136342.1| - 1.9e-49 167.8 0.1 3.7e-49 166.8 0.0 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2150 PF09920.4 gi|55378494|ref|YP_136344.1| - 2.4e-73 245.7 8.5 2.8e-73 245.5 5.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.11 gi|55378495|ref|YP_136345.1| - 1.6e-05 24.7 3.5 1.6e-05 24.7 2.4 4.8 6 0 0 6 6 6 1 Bacterial Ig-like domain (group 1) PKD PF00801.15 gi|55378495|ref|YP_136345.1| - 0.016 14.9 0.3 0.016 14.9 0.2 5.0 5 1 0 5 5 5 0 PKD domain DUF824 PF05688.6 gi|55378495|ref|YP_136345.1| - 0.19 11.4 4.5 2 8.1 0.1 4.2 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) CAP PF00188.21 gi|55378496|ref|YP_136346.1| - 0.019 15.4 0.1 0.029 14.8 0.1 1.4 1 0 0 1 1 1 0 Cysteine-rich secretory protein family IER PF05760.7 gi|55378496|ref|YP_136346.1| - 0.4 10.5 5.6 0.51 10.2 3.9 1.1 1 0 0 1 1 1 0 Immediate early response protein (IER) Radial_spoke_3 PF06098.6 gi|55378497|ref|YP_136347.1| - 0.088 11.8 2.2 0.12 11.3 1.5 1.2 1 0 0 1 1 1 0 Radial spoke protein 3 HMG_CoA_synt_N PF01154.12 gi|55378498|ref|YP_136348.1| - 3.6e-27 95.0 0.0 5e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|55378498|ref|YP_136348.1| - 3.5e-17 62.8 0.0 9.6e-17 61.3 0.0 1.6 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_31 PF13560.1 gi|55378499|ref|YP_136349.1| - 7.6e-09 35.6 0.1 2.3e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55378499|ref|YP_136349.1| - 1.8e-08 34.0 0.0 3.8e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|55378499|ref|YP_136349.1| - 2.7e-07 30.5 0.0 8.5e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|55378499|ref|YP_136349.1| - 0.032 13.8 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 MarR family IspD PF01128.14 gi|55378499|ref|YP_136349.1| - 0.047 13.2 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Phage_CI_repr PF07022.8 gi|55378499|ref|YP_136349.1| - 0.14 12.2 0.0 0.61 10.1 0.0 2.1 2 1 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain DUF1628 PF07790.6 gi|55378500|ref|YP_136350.1| - 5.2e-08 33.5 0.0 1.2e-07 32.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) AAA PF00004.24 gi|55378501|ref|YP_136351.1| - 2.6e-11 43.8 0.0 8.6e-11 42.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|55378501|ref|YP_136351.1| - 1.5e-06 28.3 0.0 0.04 13.9 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.7 gi|55378501|ref|YP_136351.1| - 2.2e-06 26.8 0.0 4.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|55378501|ref|YP_136351.1| - 6.1e-06 26.4 0.0 0.00016 21.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|55378501|ref|YP_136351.1| - 0.00038 19.5 0.0 0.00074 18.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|55378501|ref|YP_136351.1| - 0.00062 20.5 0.2 0.0053 17.5 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|55378501|ref|YP_136351.1| - 0.00096 18.8 0.1 0.0065 16.2 0.0 2.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|55378501|ref|YP_136351.1| - 0.0018 17.9 0.0 0.0059 16.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein RNA_helicase PF00910.17 gi|55378501|ref|YP_136351.1| - 0.0021 18.2 0.0 0.031 14.4 0.0 2.4 2 0 0 2 2 2 1 RNA helicase DUF815 PF05673.8 gi|55378501|ref|YP_136351.1| - 0.0025 16.8 0.0 0.0053 15.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Rad17 PF03215.10 gi|55378501|ref|YP_136351.1| - 0.0073 15.0 0.0 0.41 9.2 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein IstB_IS21 PF01695.12 gi|55378501|ref|YP_136351.1| - 0.0077 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|55378501|ref|YP_136351.1| - 0.024 14.2 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|55378501|ref|YP_136351.1| - 0.027 14.3 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55378501|ref|YP_136351.1| - 0.029 14.2 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|55378501|ref|YP_136351.1| - 0.029 13.5 0.0 0.15 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|55378501|ref|YP_136351.1| - 0.034 13.5 0.2 0.55 9.5 0.0 2.6 1 1 1 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|55378501|ref|YP_136351.1| - 0.043 12.9 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|55378501|ref|YP_136351.1| - 0.074 13.3 0.1 0.43 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|55378501|ref|YP_136351.1| - 0.14 11.7 0.0 0.4 10.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.17 gi|55378502|ref|YP_136352.1| - 9e-19 67.7 8.8 9e-19 67.7 6.1 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|55378503|ref|YP_136353.1| - 9.2e-32 110.1 0.0 1.2e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378503|ref|YP_136353.1| - 5e-14 52.9 0.0 4.6e-09 36.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55378503|ref|YP_136353.1| - 1.3e-08 34.4 0.0 1.3e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55378503|ref|YP_136353.1| - 5.1e-05 23.3 0.0 9.1e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|55378503|ref|YP_136353.1| - 7.5e-05 22.3 0.0 0.031 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|55378503|ref|YP_136353.1| - 0.00021 20.7 0.0 0.00039 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|55378503|ref|YP_136353.1| - 0.0011 18.6 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55378503|ref|YP_136353.1| - 0.0057 15.8 0.0 0.0081 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|55378503|ref|YP_136353.1| - 0.015 13.9 0.0 0.44 9.0 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|55378503|ref|YP_136353.1| - 0.016 15.3 0.1 0.032 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|55378503|ref|YP_136353.1| - 0.017 15.0 0.6 0.22 11.4 0.2 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|55378503|ref|YP_136353.1| - 0.03 13.7 0.0 2.8 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|55378503|ref|YP_136353.1| - 0.03 13.3 0.0 0.94 8.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|55378503|ref|YP_136353.1| - 0.041 14.7 0.3 0.1 13.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|55378503|ref|YP_136353.1| - 0.044 14.0 0.0 0.092 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55378503|ref|YP_136353.1| - 0.061 13.1 0.1 0.091 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|55378503|ref|YP_136353.1| - 0.069 12.9 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|55378503|ref|YP_136353.1| - 0.07 12.6 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|55378503|ref|YP_136353.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|55378504|ref|YP_136354.1| - 4.6e-23 81.6 9.7 5.7e-23 81.3 6.7 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|55378505|ref|YP_136355.1| - 9.7e-58 195.0 0.1 1.1e-57 194.8 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|55378505|ref|YP_136355.1| - 0.00054 19.6 0.0 0.0025 17.4 0.0 1.9 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|55378505|ref|YP_136355.1| - 0.016 14.6 0.1 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein COX15-CtaA PF02628.10 gi|55378506|ref|YP_136356.1| - 2.7e-21 75.7 13.7 3.2e-21 75.4 9.5 1.1 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein MCPsignal PF00015.16 gi|55378507|ref|YP_136357.1| - 6.6e-46 156.5 54.3 2.8e-43 147.9 22.3 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|55378507|ref|YP_136357.1| - 2.9e-12 46.8 0.0 1.4e-11 44.6 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|55378507|ref|YP_136357.1| - 4.6e-12 45.9 0.1 1.8e-10 40.8 0.0 3.1 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|55378507|ref|YP_136357.1| - 1.4e-10 40.9 0.0 5.7e-10 38.9 0.0 2.1 1 0 0 1 1 1 1 PAS fold TMF_TATA_bd PF12325.3 gi|55378507|ref|YP_136357.1| - 0.0032 17.1 4.2 0.0032 17.1 2.9 4.1 2 2 2 4 4 4 1 TATA element modulatory factor 1 TATA binding DUF745 PF05335.8 gi|55378507|ref|YP_136357.1| - 0.0084 15.6 10.1 0.0084 15.6 7.0 4.7 3 2 2 5 5 5 2 Protein of unknown function (DUF745) PAS_8 PF13188.1 gi|55378507|ref|YP_136357.1| - 0.0085 15.9 0.0 0.039 13.8 0.0 2.2 1 0 0 1 1 1 1 PAS domain PilJ PF13675.1 gi|55378507|ref|YP_136357.1| - 0.031 14.5 1.1 0.031 14.5 0.7 4.8 2 1 3 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term RF-1 PF00472.15 gi|55378507|ref|YP_136357.1| - 0.04 13.7 1.7 0.51 10.1 0.0 3.1 3 0 0 3 3 3 0 RF-1 domain Spc7 PF08317.6 gi|55378507|ref|YP_136357.1| - 0.082 11.5 27.9 0.22 10.1 7.6 3.1 1 1 1 3 3 3 0 Spc7 kinetochore protein PAS_3 PF08447.6 gi|55378507|ref|YP_136357.1| - 0.095 12.8 0.0 15 5.7 0.0 2.8 1 1 0 2 2 2 0 PAS fold Baculo_PEP_C PF04513.7 gi|55378507|ref|YP_136357.1| - 0.12 12.2 29.9 0.52 10.1 4.1 4.3 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus HAMP PF00672.20 gi|55378507|ref|YP_136357.1| - 0.29 11.3 0.1 0.29 11.3 0.1 4.1 4 1 0 4 4 4 0 HAMP domain AAA_13 PF13166.1 gi|55378507|ref|YP_136357.1| - 0.3 9.4 27.8 0.75 8.1 10.8 2.1 1 1 1 2 2 2 0 AAA domain YjcZ PF13990.1 gi|55378507|ref|YP_136357.1| - 0.33 10.0 19.5 2.1 7.4 2.5 4.3 3 1 1 4 4 4 0 YjcZ-like protein IFT57 PF10498.4 gi|55378507|ref|YP_136357.1| - 0.41 9.3 20.8 0.46 9.1 3.4 2.7 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 PAS_10 PF13596.1 gi|55378507|ref|YP_136357.1| - 0.58 10.4 3.7 0.9 9.8 0.0 3.4 3 2 0 4 4 2 0 PAS domain Fib_alpha PF08702.5 gi|55378507|ref|YP_136357.1| - 0.72 9.9 19.7 22 5.1 4.5 4.9 4 2 2 6 6 6 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|55378507|ref|YP_136357.1| - 1 9.1 33.6 0.69 9.7 0.6 4.7 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|55378507|ref|YP_136357.1| - 1.5 9.0 26.1 3.7 7.7 1.3 5.0 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|55378507|ref|YP_136357.1| - 1.9 8.2 38.0 1.7 8.4 7.5 4.6 2 2 2 4 4 4 0 Laminin Domain II DASH_Dam1 PF08653.5 gi|55378507|ref|YP_136357.1| - 2 8.2 8.5 1.5 8.6 0.2 4.6 6 0 0 6 6 6 0 DASH complex subunit Dam1 TMPIT PF07851.8 gi|55378507|ref|YP_136357.1| - 2.6 7.0 10.6 3.8 6.5 0.4 2.6 2 0 0 2 2 2 0 TMPIT-like protein IncA PF04156.9 gi|55378507|ref|YP_136357.1| - 3.3 7.2 24.8 1.5e+04 -6.5 17.1 2.9 1 1 0 1 1 0 0 IncA protein COG2 PF06148.6 gi|55378507|ref|YP_136357.1| - 4.1 7.2 27.2 2.1 8.1 3.9 5.4 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF948 PF06103.6 gi|55378507|ref|YP_136357.1| - 4.9 7.0 37.9 0.81 9.5 2.3 4.8 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) APG17 PF04108.7 gi|55378507|ref|YP_136357.1| - 6.6 5.4 30.2 71 2.0 20.8 3.3 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF4200 PF13863.1 gi|55378507|ref|YP_136357.1| - 6.7 6.6 18.6 2.1 8.3 1.5 3.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) Prominin PF05478.6 gi|55378507|ref|YP_136357.1| - 7.6 3.9 23.0 0.66 7.4 2.2 2.3 1 1 0 2 2 2 0 Prominin PTA_PTB PF01515.14 gi|55378508|ref|YP_136358.1| - 2.3e-93 312.7 0.0 3.2e-93 312.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|55378508|ref|YP_136358.1| - 7.4e-70 235.4 0.2 7.4e-70 235.4 0.2 1.5 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|55378508|ref|YP_136358.1| - 3.8e-31 108.0 0.3 1.7e-28 99.4 0.0 2.8 2 1 0 2 2 2 1 Malic enzyme, N-terminal domain Pribosyltran PF00156.22 gi|55378511|ref|YP_136361.1| - 3.8e-19 68.6 0.0 5.6e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|55378511|ref|YP_136361.1| - 0.013 15.2 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain TruD PF01142.13 gi|55378512|ref|YP_136362.1| - 2e-95 319.6 0.0 7.5e-57 192.7 0.0 2.0 2 0 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) DUF2138 PF09909.4 gi|55378512|ref|YP_136362.1| - 0.12 10.4 0.1 0.19 9.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) MFS_1 PF07690.11 gi|55378514|ref|YP_136364.1| - 2.6e-12 46.1 59.8 5.9e-09 35.0 21.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SCFA_trans PF02667.9 gi|55378515|ref|YP_136365.1| - 6.2e-125 417.5 20.1 7e-125 417.3 13.9 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DcuC PF03606.10 gi|55378515|ref|YP_136365.1| - 6.2e-05 21.4 8.6 6.2e-05 21.4 5.9 1.8 2 0 0 2 2 2 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.8 gi|55378515|ref|YP_136365.1| - 0.0002 19.5 6.0 0.0002 19.5 4.1 1.6 2 0 0 2 2 2 1 AbgT putative transporter family 2-Hacid_dh_C PF02826.14 gi|55378516|ref|YP_136366.1| - 1.1e-55 187.5 0.0 2e-55 186.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|55378516|ref|YP_136366.1| - 3.5e-29 100.9 0.1 4e-29 100.7 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|55378516|ref|YP_136366.1| - 0.1 12.7 0.2 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Aldolase_2 PF10120.4 gi|55378517|ref|YP_136367.1| - 6.1e-49 165.6 0.0 1e-48 164.9 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|55378517|ref|YP_136367.1| - 1.5e-05 24.7 0.1 3.7e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|55378517|ref|YP_136367.1| - 6.7e-05 22.1 0.0 0.00018 20.7 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|55378517|ref|YP_136367.1| - 9.5e-05 21.9 0.0 0.0003 20.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|55378517|ref|YP_136367.1| - 0.00021 20.7 0.1 0.00072 19.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|55378517|ref|YP_136367.1| - 0.00025 20.8 0.1 0.00075 19.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|55378517|ref|YP_136367.1| - 0.0015 18.7 1.3 0.0034 17.5 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|55378517|ref|YP_136367.1| - 0.0016 17.8 0.0 0.0036 16.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|55378517|ref|YP_136367.1| - 0.0079 16.3 0.1 0.044 13.9 0.0 2.2 2 0 0 2 2 2 1 KorB domain MarR_2 PF12802.2 gi|55378517|ref|YP_136367.1| - 0.012 15.2 0.0 0.037 13.6 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|55378517|ref|YP_136367.1| - 0.017 14.7 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain RepB PF07506.6 gi|55378517|ref|YP_136367.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_19 PF12844.2 gi|55378517|ref|YP_136367.1| - 0.076 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|55378517|ref|YP_136367.1| - 0.12 11.8 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Kdo_hydroxy PF11004.3 gi|55378517|ref|YP_136367.1| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase TENA_THI-4 PF03070.11 gi|55378518|ref|YP_136368.1| - 3.7e-47 160.8 1.4 4.4e-47 160.5 0.9 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|55378519|ref|YP_136369.1| - 3.2e-23 82.5 0.0 4e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.12 gi|55378520|ref|YP_136370.1| - 1.1e-23 83.6 33.1 1.8e-23 82.8 22.9 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family SKG6 PF08693.5 gi|55378521|ref|YP_136371.1| - 2.6 7.4 4.9 6.9 6.0 1.9 2.1 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Usp PF00582.21 gi|55378522|ref|YP_136372.1| - 1.3e-12 48.1 0.0 1.3e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family Proteasome PF00227.21 gi|55378523|ref|YP_136373.1| - 6.5e-45 152.7 0.1 7.5e-45 152.5 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.21 gi|55378524|ref|YP_136374.1| - 8.5e-60 201.2 0.0 1.1e-59 200.9 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|55378524|ref|YP_136374.1| - 2.2e-14 52.4 0.1 4.2e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Phage_FRD3 PF05798.6 gi|55378524|ref|YP_136374.1| - 0.024 14.9 0.0 0.057 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage FRD3 protein PTH2 PF01981.11 gi|55378525|ref|YP_136375.1| - 3.5e-40 136.3 0.0 4.1e-40 136.0 0.0 1.1 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.12 gi|55378526|ref|YP_136376.1| - 3.8e-31 107.8 10.7 4.6e-31 107.6 7.4 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|55378526|ref|YP_136376.1| - 0.014 15.0 8.4 0.061 12.9 4.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) DUF1616 PF07760.6 gi|55378526|ref|YP_136376.1| - 0.053 12.6 0.1 0.12 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DCD PF06559.6 gi|161723234|ref|YP_136377.2| - 2.3e-15 55.8 0.1 1.3e-13 50.0 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|161723234|ref|YP_136377.2| - 8e-15 54.4 0.0 1.1e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase Aldolase_2 PF10120.4 gi|55378528|ref|YP_136378.1| - 2.3e-51 173.5 0.1 3.1e-51 173.1 0.1 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|55378528|ref|YP_136378.1| - 1.3e-07 31.3 0.0 2.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|55378528|ref|YP_136378.1| - 1.1e-06 28.7 1.2 3.6e-06 27.0 0.5 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|55378528|ref|YP_136378.1| - 1.5e-05 24.7 0.0 2.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|55378528|ref|YP_136378.1| - 2.2e-05 24.4 0.0 3.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|55378528|ref|YP_136378.1| - 9.4e-05 22.5 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|55378528|ref|YP_136378.1| - 0.00018 20.7 0.0 0.00059 19.0 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|55378528|ref|YP_136378.1| - 0.00029 20.1 0.0 0.00066 19.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|55378528|ref|YP_136378.1| - 0.00042 19.8 0.0 0.0013 18.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|55378528|ref|YP_136378.1| - 0.00072 19.1 0.0 0.0028 17.2 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|55378528|ref|YP_136378.1| - 0.00091 18.7 0.0 0.0024 17.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55378528|ref|YP_136378.1| - 0.0028 17.3 0.0 0.0072 15.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55378528|ref|YP_136378.1| - 0.0035 17.1 1.0 0.065 13.0 0.0 3.3 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|55378528|ref|YP_136378.1| - 0.011 15.2 0.0 0.03 13.8 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.7 gi|55378528|ref|YP_136378.1| - 0.011 15.1 0.0 0.031 13.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|55378528|ref|YP_136378.1| - 0.015 15.5 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|55378528|ref|YP_136378.1| - 0.021 14.3 0.1 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_1 PF00126.22 gi|55378528|ref|YP_136378.1| - 0.024 14.3 0.0 0.075 12.7 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2481 PF10654.4 gi|55378528|ref|YP_136378.1| - 0.035 13.7 0.0 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_Tnp_ISL3 PF13542.1 gi|55378528|ref|YP_136378.1| - 0.045 12.9 0.0 0.15 11.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|55378528|ref|YP_136378.1| - 0.048 13.2 1.7 0.18 11.4 0.0 2.7 3 0 0 3 3 2 0 IclR helix-turn-helix domain KorB PF08535.5 gi|55378528|ref|YP_136378.1| - 0.074 13.2 0.1 1.2 9.3 0.0 2.7 2 1 0 2 2 2 0 KorB domain Cro PF09048.5 gi|55378528|ref|YP_136378.1| - 0.083 12.5 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Cro RepB PF07506.6 gi|55378528|ref|YP_136378.1| - 0.084 12.7 0.1 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 RepB plasmid partitioning protein HTH_Crp_2 PF13545.1 gi|55378528|ref|YP_136378.1| - 0.094 12.5 0.0 0.33 10.7 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain P22_Cro PF14549.1 gi|55378528|ref|YP_136378.1| - 0.12 12.1 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro DUF1670 PF07900.6 gi|55378528|ref|YP_136378.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Methyltransf_11 PF08241.7 gi|55378529|ref|YP_136379.1| - 5.4e-14 52.4 0.0 9.5e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378529|ref|YP_136379.1| - 3.2e-11 43.0 0.0 3.4e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55378529|ref|YP_136379.1| - 2.5e-09 37.0 0.0 3.3e-09 36.6 0.0 1.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378529|ref|YP_136379.1| - 4.5e-09 36.6 0.0 7e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378529|ref|YP_136379.1| - 1.4e-08 34.9 0.0 2.5e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378529|ref|YP_136379.1| - 2.5e-08 34.4 0.1 4.4e-08 33.6 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55378529|ref|YP_136379.1| - 6.4e-08 31.9 0.0 8.2e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|55378529|ref|YP_136379.1| - 1.7e-05 24.8 2.3 2.1e-05 24.4 0.5 1.9 2 1 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|55378529|ref|YP_136379.1| - 0.0033 16.9 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Thi4 PF01946.12 gi|55378532|ref|YP_136382.1| - 2.1e-60 203.7 0.6 6.2e-49 166.1 0.1 2.2 1 1 1 2 2 2 2 Thi4 family FAD_oxidored PF12831.2 gi|55378532|ref|YP_136382.1| - 7.4e-12 45.0 0.4 1.2e-11 44.3 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|55378532|ref|YP_136382.1| - 9.6e-12 44.4 1.8 1.4e-07 30.7 0.2 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55378532|ref|YP_136382.1| - 3.1e-11 42.7 1.4 2.6e-08 33.1 0.4 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|55378532|ref|YP_136382.1| - 1.2e-10 41.0 0.1 2.1e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|55378532|ref|YP_136382.1| - 1.8e-09 36.6 0.0 2.3e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|55378532|ref|YP_136382.1| - 1.1e-08 34.9 0.2 2.6e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|55378532|ref|YP_136382.1| - 1e-06 28.9 0.0 1.5e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|55378532|ref|YP_136382.1| - 1.5e-06 28.2 0.1 1.9e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|55378532|ref|YP_136382.1| - 4.9e-06 25.4 0.3 0.0011 17.7 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|55378532|ref|YP_136382.1| - 1.1e-05 25.7 0.3 2.9e-05 24.3 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|55378532|ref|YP_136382.1| - 1.1e-05 25.2 0.5 3.7e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|55378532|ref|YP_136382.1| - 1.4e-05 24.2 0.2 0.0015 17.5 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|55378532|ref|YP_136382.1| - 0.00037 20.6 0.0 0.00083 19.5 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|55378532|ref|YP_136382.1| - 0.00056 19.1 0.0 0.0015 17.7 0.0 1.7 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|55378532|ref|YP_136382.1| - 0.0006 18.7 0.2 0.00098 18.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A YjeF_N PF03853.10 gi|55378532|ref|YP_136382.1| - 0.018 14.6 0.1 0.5 9.9 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus Shikimate_DH PF01488.15 gi|55378532|ref|YP_136382.1| - 0.022 14.8 0.0 0.15 12.1 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|55378532|ref|YP_136382.1| - 0.062 13.3 1.3 0.08 12.9 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain HTH_10 PF04967.7 gi|55378535|ref|YP_136385.1| - 2.3e-16 59.0 0.2 6.7e-16 57.6 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|55378535|ref|YP_136385.1| - 7.4e-07 28.5 0.1 0.037 13.4 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.14 gi|55378535|ref|YP_136385.1| - 0.003 16.8 0.0 0.034 13.4 0.0 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|55378535|ref|YP_136385.1| - 0.0036 16.5 0.2 0.0084 15.4 0.2 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|55378535|ref|YP_136385.1| - 0.042 14.0 0.4 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.1 gi|55378535|ref|YP_136385.1| - 0.056 13.1 0.1 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|55378535|ref|YP_136385.1| - 0.1 12.1 0.5 0.46 10.0 0.1 2.2 2 1 0 2 2 2 0 LexA DNA binding domain Urocanase PF01175.13 gi|55378536|ref|YP_136386.1| - 3.7e-260 863.6 0.1 4.5e-260 863.3 0.1 1.0 1 0 0 1 1 1 1 Urocanase Arginase PF00491.16 gi|55378537|ref|YP_136387.1| - 1.2e-59 201.9 3.8 1.4e-59 201.7 2.6 1.0 1 0 0 1 1 1 1 Arginase family GGDN PF05165.7 gi|55378537|ref|YP_136387.1| - 0.019 13.9 0.0 0.13 11.3 0.0 2.0 2 0 0 2 2 2 0 GGDN family Amidohydro_5 PF13594.1 gi|55378538|ref|YP_136388.1| - 8.8e-14 51.0 0.7 5.4e-13 48.5 0.2 2.7 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|55378538|ref|YP_136388.1| - 1.8e-13 51.1 23.8 2.2e-13 50.8 14.6 2.6 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|55378538|ref|YP_136388.1| - 1.1e-11 44.9 3.8 1.1e-10 41.7 2.6 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|55378538|ref|YP_136388.1| - 0.00024 20.4 15.0 17 4.4 10.4 2.7 1 1 0 1 1 1 1 Amidohydrolase family Lyase_aromatic PF00221.14 gi|55378539|ref|YP_136389.1| - 1.9e-176 587.1 8.6 2.4e-176 586.8 5.9 1.1 1 0 0 1 1 1 1 Aromatic amino acid lyase AAA PF00004.24 gi|55378540|ref|YP_136390.1| - 2.6e-81 270.3 0.0 5.4e-40 136.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|55378540|ref|YP_136390.1| - 2.2e-11 43.2 0.0 4.8e-05 22.5 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|55378540|ref|YP_136390.1| - 1.7e-10 40.7 0.2 0.0001 22.0 0.0 3.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|55378540|ref|YP_136390.1| - 3.5e-10 40.7 0.1 0.00069 20.4 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|55378540|ref|YP_136390.1| - 5.7e-10 39.4 1.9 0.02 14.8 0.0 4.5 2 2 2 4 4 4 2 AAA ATPase domain AAA_2 PF07724.9 gi|55378540|ref|YP_136390.1| - 7.7e-10 38.9 0.0 0.00068 19.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|55378540|ref|YP_136390.1| - 2.6e-09 37.0 0.0 0.0031 17.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|55378540|ref|YP_136390.1| - 3.2e-09 36.8 0.1 0.0052 16.6 0.0 3.9 5 0 0 5 5 3 2 AAA domain IstB_IS21 PF01695.12 gi|55378540|ref|YP_136390.1| - 4.9e-08 32.5 3.8 0.0016 17.9 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|55378540|ref|YP_136390.1| - 1.3e-07 31.7 1.1 0.059 13.5 0.0 4.2 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|55378540|ref|YP_136390.1| - 1.9e-07 31.2 0.0 0.015 15.4 0.0 2.5 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|55378540|ref|YP_136390.1| - 2.5e-07 30.5 1.2 0.57 9.8 0.0 4.3 2 2 2 4 4 4 2 NACHT domain AAA_25 PF13481.1 gi|55378540|ref|YP_136390.1| - 2.5e-07 30.3 6.7 0.25 10.7 0.1 4.4 2 2 2 4 4 4 3 AAA domain Viral_helicase1 PF01443.13 gi|55378540|ref|YP_136390.1| - 6.2e-07 29.1 0.0 0.049 13.1 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|55378540|ref|YP_136390.1| - 1.9e-06 27.5 2.0 0.034 13.8 0.1 3.4 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|55378540|ref|YP_136390.1| - 2.4e-06 26.7 0.4 0.035 13.1 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin AAA_28 PF13521.1 gi|55378540|ref|YP_136390.1| - 2.8e-06 27.4 0.4 0.082 12.8 0.0 3.5 4 0 0 4 4 2 2 AAA domain AAA_18 PF13238.1 gi|55378540|ref|YP_136390.1| - 3e-06 27.5 0.0 0.11 12.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|55378540|ref|YP_136390.1| - 1.2e-05 25.3 0.1 0.23 11.5 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|55378540|ref|YP_136390.1| - 1.8e-05 23.6 0.0 0.11 11.1 0.0 2.6 2 1 0 2 2 2 2 TIP49 C-terminus Mg_chelatase PF01078.16 gi|55378540|ref|YP_136390.1| - 4.8e-05 22.6 0.3 0.14 11.2 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.13 gi|55378540|ref|YP_136390.1| - 0.00024 20.8 0.0 0.39 10.3 0.0 2.9 2 2 0 2 2 2 2 Bacterial dnaA protein ABC_tran PF00005.22 gi|55378540|ref|YP_136390.1| - 0.00031 21.0 0.0 1.1 9.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|55378540|ref|YP_136390.1| - 0.00047 19.7 0.0 0.59 9.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|55378540|ref|YP_136390.1| - 0.0008 19.3 0.0 0.78 9.6 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase Rad17 PF03215.10 gi|55378540|ref|YP_136390.1| - 0.00095 17.9 0.2 0.41 9.2 0.0 2.5 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein AAA_11 PF13086.1 gi|55378540|ref|YP_136390.1| - 0.0023 17.5 0.0 0.91 9.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|55378540|ref|YP_136390.1| - 0.0046 16.5 0.4 0.65 9.5 0.1 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|55378540|ref|YP_136390.1| - 0.04 13.3 0.0 11 5.4 0.0 3.0 4 0 0 4 4 3 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|55378540|ref|YP_136390.1| - 0.042 12.7 0.1 6.7 5.4 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|55378540|ref|YP_136390.1| - 0.045 12.9 1.5 5.1 6.2 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein UPF0079 PF02367.12 gi|55378540|ref|YP_136390.1| - 0.046 13.3 0.3 4.1 7.0 0.0 2.6 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|55378540|ref|YP_136390.1| - 0.052 13.2 0.1 3.9 7.0 0.0 3.1 2 2 2 4 4 4 0 Archaeal ATPase DUF815 PF05673.8 gi|55378540|ref|YP_136390.1| - 0.063 12.2 0.0 5.5 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Guanylate_kin PF00625.16 gi|55378540|ref|YP_136390.1| - 0.065 12.6 0.0 12 5.2 0.0 3.2 3 1 1 4 4 3 0 Guanylate kinase KaiC PF06745.8 gi|55378540|ref|YP_136390.1| - 0.11 11.6 0.1 13 4.8 0.0 2.7 2 1 1 3 3 3 0 KaiC NB-ARC PF00931.17 gi|55378540|ref|YP_136390.1| - 0.48 9.2 0.5 21 3.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF137 PF02006.11 gi|55378541|ref|YP_136391.1| - 2.5e-70 235.4 1.1 3.1e-70 235.1 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|55378541|ref|YP_136391.1| - 0.015 14.5 0.1 0.025 13.8 0.1 1.3 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) PhzC-PhzF PF02567.11 gi|55378542|ref|YP_136392.1| - 2.7e-39 135.0 2.3 3.1e-39 134.8 1.6 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|55378542|ref|YP_136392.1| - 0.003 17.4 0.6 0.0065 16.3 0.1 1.8 2 0 0 2 2 2 1 Diaminopimelate epimerase PPDK_N PF01326.14 gi|55378543|ref|YP_136393.1| - 1.5e-104 349.6 3.2 1.5e-104 349.6 2.2 1.6 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|55378543|ref|YP_136393.1| - 1.1e-77 260.8 0.0 1.8e-77 260.1 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|55378543|ref|YP_136393.1| - 2.9e-30 103.6 1.9 9.1e-30 102.0 0.8 2.3 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain KaiC PF06745.8 gi|55378544|ref|YP_136394.1| - 1.1e-06 27.9 0.9 0.02 14.0 0.2 2.4 2 1 0 2 2 2 2 KaiC Pyridoxal_deC PF00282.14 gi|55378545|ref|YP_136395.1| - 1.4e-24 86.2 0.0 2.2e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|55378545|ref|YP_136395.1| - 1.1e-08 34.2 0.0 1.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V tRNA-synt_1g PF09334.6 gi|55378546|ref|YP_136396.1| - 1.3e-127 425.7 0.0 3.1e-126 421.2 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|55378546|ref|YP_136396.1| - 1.4e-22 79.2 0.0 2.3e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|55378546|ref|YP_136396.1| - 2.5e-09 35.6 0.1 3.2e-06 25.4 0.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|55378546|ref|YP_136396.1| - 1.3e-07 31.5 0.0 2.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|55378546|ref|YP_136396.1| - 4.2e-06 26.1 0.0 0.00049 19.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|55378546|ref|YP_136396.1| - 0.017 13.9 0.0 0.038 12.7 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|55378546|ref|YP_136396.1| - 0.045 12.4 0.0 0.2 10.2 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF3040 PF11239.3 gi|55378547|ref|YP_136397.1| - 0.16 12.0 0.7 0.24 11.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) NfeD PF01957.13 gi|55378548|ref|YP_136398.1| - 1.4e-15 57.6 1.3 1.7e-15 57.3 0.9 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Band_7 PF01145.20 gi|55378549|ref|YP_136399.1| - 4.6e-41 140.6 3.0 1e-40 139.5 2.1 1.6 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|55378549|ref|YP_136399.1| - 0.0019 17.7 0.1 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family SNN_transmemb PF09049.5 gi|55378549|ref|YP_136399.1| - 0.96 9.1 3.6 2.3 7.9 2.5 1.6 1 0 0 1 1 1 0 Stannin transmembrane MarR_2 PF12802.2 gi|55378550|ref|YP_136400.1| - 2.5e-10 39.8 0.4 2.8e-09 36.4 0.1 2.5 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|55378550|ref|YP_136400.1| - 9.9e-10 38.0 1.3 3e-07 30.1 0.2 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|55378550|ref|YP_136400.1| - 3e-08 33.2 0.0 9.7e-06 25.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55378550|ref|YP_136400.1| - 4.9e-08 32.5 0.1 2e-05 24.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|55378550|ref|YP_136400.1| - 5e-08 32.5 0.0 3.4e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|55378550|ref|YP_136400.1| - 6.5e-08 32.1 0.0 1.2e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|55378550|ref|YP_136400.1| - 1.2e-06 28.4 0.0 0.062 13.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55378550|ref|YP_136400.1| - 1.9e-05 24.1 4.2 0.00057 19.4 0.1 2.9 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55378550|ref|YP_136400.1| - 3.4e-05 23.1 0.0 0.00035 19.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|55378550|ref|YP_136400.1| - 0.00013 21.3 0.1 0.0015 17.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|55378550|ref|YP_136400.1| - 0.00083 19.1 0.0 0.0024 17.6 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|55378550|ref|YP_136400.1| - 0.0013 18.5 0.0 0.0044 16.9 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|55378550|ref|YP_136400.1| - 0.0043 17.1 0.0 0.021 14.9 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_23 PF13384.1 gi|55378550|ref|YP_136400.1| - 0.0058 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_41 PF14502.1 gi|55378550|ref|YP_136400.1| - 0.01 15.4 0.0 5.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|55378550|ref|YP_136400.1| - 0.015 15.4 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|55378550|ref|YP_136400.1| - 0.051 13.4 0.0 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix DUF2250 PF10007.4 gi|55378550|ref|YP_136400.1| - 0.061 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.7 gi|55378550|ref|YP_136400.1| - 0.086 12.4 0.1 0.26 10.8 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain HTH_CodY PF08222.6 gi|55378550|ref|YP_136400.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|55378550|ref|YP_136400.1| - 0.11 12.8 0.1 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|55378550|ref|YP_136400.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PAS_3 PF08447.6 gi|55378551|ref|YP_136401.1| - 1.5e-22 79.4 2.1 4.9e-13 48.9 0.1 2.7 3 0 0 3 3 2 2 PAS fold PAS_9 PF13426.1 gi|55378551|ref|YP_136401.1| - 8.5e-20 71.0 1.4 1.4e-13 51.0 0.1 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|55378551|ref|YP_136401.1| - 7.7e-18 64.5 0.0 1.9e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55378551|ref|YP_136401.1| - 1.5e-17 63.2 0.1 5.3e-17 61.5 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55378551|ref|YP_136401.1| - 1.2e-15 57.4 3.7 5.1e-12 45.8 0.1 3.0 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|55378551|ref|YP_136401.1| - 1e-10 41.4 0.9 2.8e-10 40.0 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|55378551|ref|YP_136401.1| - 1.6e-08 34.2 0.2 3e-06 26.9 0.1 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|55378551|ref|YP_136401.1| - 3.7e-05 23.4 0.0 0.00012 21.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_11 PF14598.1 gi|55378551|ref|YP_136401.1| - 0.0025 17.7 0.0 1.4 8.9 0.0 2.7 2 1 0 2 2 2 2 PAS domain OKR_DC_1_N PF03709.10 gi|55378551|ref|YP_136401.1| - 0.0028 17.7 0.0 0.0081 16.2 0.0 1.8 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|55378551|ref|YP_136401.1| - 0.0053 16.5 0.0 0.018 14.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55378551|ref|YP_136401.1| - 0.022 14.4 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LexA_DNA_bind PF01726.11 gi|55378552|ref|YP_136402.1| - 0.0029 17.1 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|55378552|ref|YP_136402.1| - 0.008 15.5 0.5 0.53 9.7 0.1 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_6 PF01418.12 gi|55378552|ref|YP_136402.1| - 0.14 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TRAM PF01938.15 gi|55378553|ref|YP_136403.1| - 1.2e-14 53.7 2.4 3.3e-14 52.4 1.8 1.7 2 0 0 2 2 2 1 TRAM domain CxxCxxCC PF03692.10 gi|55378554|ref|YP_136404.1| - 3.5e-07 30.6 0.0 5.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|55378554|ref|YP_136404.1| - 0.0058 16.7 0.4 0.0099 15.9 0.3 1.4 1 0 0 1 1 1 1 High potential iron-sulfur protein Lactamase_B PF00753.22 gi|55378555|ref|YP_136405.1| - 2.5e-20 72.9 9.3 3.5e-20 72.4 6.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55378555|ref|YP_136405.1| - 0.00032 20.2 0.1 0.00051 19.6 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Gluconate_2-dh3 PF13618.1 gi|55378555|ref|YP_136405.1| - 0.00077 19.6 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 PQQ_3 PF13570.1 gi|55378555|ref|YP_136405.1| - 6.4 7.2 8.9 0.34 11.2 1.3 2.5 3 1 0 3 3 3 0 PQQ-like domain HTH_24 PF13412.1 gi|55378556|ref|YP_136406.1| - 7.3e-07 28.4 0.0 1.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55378556|ref|YP_136406.1| - 1.4e-05 24.6 0.1 1.9e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55378556|ref|YP_136406.1| - 0.0002 21.6 0.0 0.00028 21.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|55378556|ref|YP_136406.1| - 0.00032 20.4 0.1 0.00046 19.9 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55378556|ref|YP_136406.1| - 0.00055 19.5 0.0 0.00072 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|55378556|ref|YP_136406.1| - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|55378556|ref|YP_136406.1| - 0.0017 18.4 0.0 0.0026 17.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|55378556|ref|YP_136406.1| - 0.0018 17.7 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|55378556|ref|YP_136406.1| - 0.0032 17.1 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|55378556|ref|YP_136406.1| - 0.0066 16.1 0.1 0.027 14.1 0.0 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|55378556|ref|YP_136406.1| - 0.012 15.7 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|55378556|ref|YP_136406.1| - 0.023 14.3 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|55378556|ref|YP_136406.1| - 0.025 14.3 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|55378556|ref|YP_136406.1| - 0.05 13.2 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Methyltransf_11 PF08241.7 gi|55378557|ref|YP_136407.1| - 2.6e-16 59.8 0.0 3.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378557|ref|YP_136407.1| - 6.5e-11 42.0 0.0 8.5e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378557|ref|YP_136407.1| - 1.8e-09 37.8 0.0 2.5e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55378557|ref|YP_136407.1| - 2e-09 36.9 0.0 2.4e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|55378557|ref|YP_136407.1| - 3.2e-08 34.1 0.0 4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55378557|ref|YP_136407.1| - 3.2e-08 33.4 0.0 4.1e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378557|ref|YP_136407.1| - 2.8e-07 30.9 0.0 3.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|55378557|ref|YP_136407.1| - 6.3e-06 25.8 0.0 1.8e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|55378557|ref|YP_136407.1| - 0.00025 21.0 0.0 0.00031 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|55378557|ref|YP_136407.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Glycos_transf_2 PF00535.21 gi|55378558|ref|YP_136408.1| - 4.5e-13 49.2 0.0 9.8e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55378558|ref|YP_136408.1| - 1.8e-05 24.6 1.4 1.8e-05 24.6 1.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Amidohydro_2 PF04909.9 gi|55378559|ref|YP_136409.1| - 9.5e-23 81.1 2.5 2.3e-22 79.8 1.7 1.5 1 1 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.19 gi|55378560|ref|YP_136410.1| - 2.6e-136 455.0 9.5 3e-136 454.8 6.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF371 PF04027.8 gi|55378561|ref|YP_136411.1| - 3.3e-55 185.3 0.9 3.8e-55 185.1 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PRP4 PF08799.6 gi|55378562|ref|YP_136412.1| - 0.029 13.6 0.2 0.047 12.9 0.1 1.4 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Glyco_hydro_2_N PF02837.13 gi|55378563|ref|YP_136413.1| - 8.9e-07 28.6 0.0 2e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|55378563|ref|YP_136413.1| - 2.7e-06 27.8 0.1 9.4e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Laminin_II PF06009.7 gi|55378564|ref|YP_136414.1| - 0.9 9.2 36.1 2.7 7.7 6.4 3.7 1 1 2 3 3 3 0 Laminin Domain II YqzH PF14164.1 gi|55378564|ref|YP_136414.1| - 4.2 7.3 8.6 1.1 9.2 1.6 3.1 2 0 0 2 2 2 0 YqzH-like protein DUF1664 PF07889.7 gi|55378564|ref|YP_136414.1| - 8 6.2 29.9 1.7 8.4 4.3 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) LysE PF01810.13 gi|55378565|ref|YP_136415.1| - 3.7e-29 101.3 9.6 2.5e-28 98.6 6.6 1.9 1 1 0 1 1 1 1 LysE type translocator HD PF01966.17 gi|55378566|ref|YP_136416.1| - 6.7e-17 61.6 1.4 6.7e-17 61.6 1.0 1.8 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|55378566|ref|YP_136416.1| - 0.01 15.5 0.1 0.025 14.2 0.1 1.6 1 0 0 1 1 1 0 HD domain XylR_N PF06505.6 gi|55378566|ref|YP_136416.1| - 0.065 12.6 0.0 0.22 10.9 0.0 1.8 2 0 0 2 2 2 0 Activator of aromatic catabolism Claudin_2 PF13903.1 gi|55378567|ref|YP_136417.1| - 0.094 12.3 0.0 0.094 12.3 0.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Acetyltransf_10 PF13673.1 gi|55378568|ref|YP_136418.1| - 7.6e-11 42.1 0.0 1.3e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55378568|ref|YP_136418.1| - 4.6e-10 39.3 0.0 1.7e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55378568|ref|YP_136418.1| - 1.5e-07 31.4 0.0 3.5e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55378568|ref|YP_136418.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55378568|ref|YP_136418.1| - 0.0037 17.1 0.0 0.013 15.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Zn-ribbon_8 PF09723.5 gi|55378568|ref|YP_136418.1| - 0.011 15.6 1.2 0.024 14.6 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain FR47 PF08445.5 gi|55378568|ref|YP_136418.1| - 0.021 14.5 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_6 PF13480.1 gi|55378568|ref|YP_136418.1| - 0.026 14.4 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55378568|ref|YP_136418.1| - 0.04 13.7 0.0 0.14 12.0 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain WW PF00397.21 gi|55378568|ref|YP_136418.1| - 0.046 13.6 0.8 0.13 12.1 0.2 2.1 2 0 0 2 2 2 0 WW domain Fe_dep_repress PF01325.14 gi|55378569|ref|YP_136419.1| - 1.3e-16 60.2 0.0 2.1e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|55378569|ref|YP_136419.1| - 5.9e-11 41.8 0.0 9.3e-11 41.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|55378569|ref|YP_136419.1| - 4.4e-07 30.1 0.0 1.2e-06 28.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|55378569|ref|YP_136419.1| - 2.1e-05 24.1 0.0 3.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|55378569|ref|YP_136419.1| - 0.00074 19.2 0.0 0.0016 18.1 0.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|55378569|ref|YP_136419.1| - 0.00089 18.5 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|55378569|ref|YP_136419.1| - 0.0012 18.4 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|55378569|ref|YP_136419.1| - 0.0017 18.4 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|55378569|ref|YP_136419.1| - 0.0025 17.5 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55378569|ref|YP_136419.1| - 0.0042 16.8 0.0 0.0087 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55378569|ref|YP_136419.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|55378569|ref|YP_136419.1| - 0.028 13.9 0.0 0.059 12.9 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_13 PF11972.3 gi|55378569|ref|YP_136419.1| - 0.052 13.3 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain FeoC PF09012.5 gi|55378569|ref|YP_136419.1| - 0.12 12.0 0.0 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator Glutaredoxin PF00462.19 gi|55378569|ref|YP_136419.1| - 0.27 11.2 1.8 20 5.2 0.1 3.0 2 1 1 3 3 3 0 Glutaredoxin Acetyltransf_3 PF13302.1 gi|55378571|ref|YP_136421.1| - 0.0031 17.6 0.3 0.0051 16.9 0.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3558 PF12079.3 gi|55378571|ref|YP_136421.1| - 0.084 12.5 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) UPF0051 PF01458.12 gi|55378572|ref|YP_136422.1| - 9.1e-66 221.5 1.3 1.1e-65 221.2 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|55378573|ref|YP_136423.1| - 1.6e-70 237.1 0.3 2.2e-70 236.7 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.9 gi|55378573|ref|YP_136423.1| - 0.13 12.6 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase ABC_tran PF00005.22 gi|55378574|ref|YP_136424.1| - 4.2e-15 56.2 0.1 2.3e-14 53.8 0.1 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|55378574|ref|YP_136424.1| - 6e-06 25.6 0.3 0.025 13.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|55378574|ref|YP_136424.1| - 4e-05 23.7 0.3 0.0016 18.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55378574|ref|YP_136424.1| - 0.00011 23.0 0.6 0.00061 20.6 0.1 2.3 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|55378574|ref|YP_136424.1| - 0.00013 22.2 0.1 0.13 12.4 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|55378574|ref|YP_136424.1| - 0.00022 21.6 1.0 0.053 13.8 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|55378574|ref|YP_136424.1| - 0.0017 17.8 0.1 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|55378574|ref|YP_136424.1| - 0.0081 15.8 0.7 3 7.5 0.0 2.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|55378574|ref|YP_136424.1| - 0.0098 16.0 0.1 0.47 10.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|55378574|ref|YP_136424.1| - 0.023 14.5 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|55378574|ref|YP_136424.1| - 0.023 15.0 2.4 0.069 13.4 0.2 2.8 1 1 2 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|55378574|ref|YP_136424.1| - 0.026 14.5 0.2 0.34 10.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|55378574|ref|YP_136424.1| - 0.057 12.8 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|55378574|ref|YP_136424.1| - 0.058 12.7 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 MutS domain V SKI PF01202.17 gi|55378574|ref|YP_136424.1| - 0.089 12.6 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase AAA_13 PF13166.1 gi|55378574|ref|YP_136424.1| - 0.09 11.2 0.1 0.17 10.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55378574|ref|YP_136424.1| - 3.6 6.9 5.1 11 5.3 3.5 1.9 1 1 0 1 1 1 0 AAA-like domain DNA_pol_B PF00136.16 gi|55378575|ref|YP_136425.1| - 4.2e-54 184.0 0.2 3.4e-34 118.4 0.2 2.7 2 1 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|55378575|ref|YP_136425.1| - 2.2e-35 122.1 0.0 3.9e-35 121.2 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.1 gi|55378575|ref|YP_136425.1| - 1.4e-08 34.7 0.0 1.1e-07 31.9 0.0 2.3 2 1 0 2 2 2 1 Hint domain Hint PF01079.15 gi|55378575|ref|YP_136425.1| - 1.1e-06 28.0 0.0 1.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.1 gi|55378575|ref|YP_136425.1| - 0.00011 22.3 0.0 0.0003 20.9 0.0 1.8 1 0 0 1 1 1 1 LAGLIDADG-like domain PT-HINT PF07591.6 gi|55378575|ref|YP_136425.1| - 0.0021 17.9 0.0 0.039 13.8 0.0 2.5 2 0 0 2 2 2 1 Pretoxin HINT domain AF0941-like PF14591.1 gi|55378576|ref|YP_136426.1| - 0.065 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 AF0941-like Phage_integrase PF00589.17 gi|55378579|ref|YP_136429.1| - 9.8e-14 51.3 0.0 5.7e-13 48.9 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|55378579|ref|YP_136429.1| - 1.4e-05 25.1 4.7 2.3e-05 24.4 0.1 2.7 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain PMSI1 PF15322.1 gi|55378579|ref|YP_136429.1| - 0.054 12.5 0.1 0.1 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative DUF4366 PF14283.1 gi|55378580|ref|YP_136430.1| - 0.065 12.6 0.0 0.1 12.0 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) AAA_23 PF13476.1 gi|55378582|ref|YP_136432.1| - 2.4e-17 63.9 82.7 8.7e-10 39.2 36.7 5.4 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|55378582|ref|YP_136432.1| - 6.8e-10 38.5 5.9 0.00017 20.7 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.1 gi|55378582|ref|YP_136432.1| - 1.3e-09 38.4 3.1 5.4e-05 23.3 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.1 gi|55378582|ref|YP_136432.1| - 1.4e-09 37.0 67.6 0.00025 19.7 7.4 5.1 2 1 2 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|55378582|ref|YP_136432.1| - 1.3e-07 31.0 0.0 2.2e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|55378582|ref|YP_136432.1| - 2e-05 23.9 61.4 0.00086 18.5 42.5 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TMF_TATA_bd PF12325.3 gi|55378582|ref|YP_136432.1| - 4.4e-05 23.2 6.4 4.4e-05 23.2 4.4 8.7 3 2 6 9 9 8 3 TATA element modulatory factor 1 TATA binding Atg14 PF10186.4 gi|55378582|ref|YP_136432.1| - 9.4e-05 21.5 12.4 9.4e-05 21.5 8.6 5.6 3 1 2 5 5 5 1 UV radiation resistance protein and autophagy-related subunit 14 CENP-F_leu_zip PF10473.4 gi|55378582|ref|YP_136432.1| - 0.00022 21.0 14.9 0.00022 21.0 10.3 6.5 3 2 3 6 6 5 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SbcCD_C PF13558.1 gi|55378582|ref|YP_136432.1| - 0.00035 20.4 0.0 0.0011 18.8 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit zf-C4H2 PF10146.4 gi|55378582|ref|YP_136432.1| - 0.00036 20.6 20.4 0.00036 20.6 14.2 4.8 2 1 3 5 5 4 1 Zinc finger-containing protein DUF2353 PF09789.4 gi|55378582|ref|YP_136432.1| - 0.00044 19.5 12.7 0.00044 19.5 8.8 5.5 2 2 4 6 6 4 1 Uncharacterized coiled-coil protein (DUF2353) DivIC PF04977.10 gi|55378582|ref|YP_136432.1| - 0.0049 16.3 3.2 0.0049 16.3 2.2 11.1 4 2 7 11 11 10 1 Septum formation initiator FliJ PF02050.11 gi|55378582|ref|YP_136432.1| - 0.014 15.4 2.1 0.014 15.4 1.5 7.6 2 2 6 8 8 6 0 Flagellar FliJ protein MukB PF04310.7 gi|55378582|ref|YP_136432.1| - 0.014 14.7 0.5 0.13 11.5 0.0 2.5 2 0 0 2 2 2 0 MukB N-terminal Reo_sigmaC PF04582.7 gi|55378582|ref|YP_136432.1| - 0.015 14.4 34.9 0.038 13.1 2.1 4.9 1 1 3 5 5 5 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|55378582|ref|YP_136432.1| - 0.025 14.1 126.7 0.015 14.9 19.7 5.9 1 1 5 6 6 5 0 IncA protein DUF4201 PF13870.1 gi|55378582|ref|YP_136432.1| - 0.12 11.7 81.1 0.031 13.7 3.4 7.1 2 2 4 7 7 7 0 Domain of unknown function (DUF4201) DASH_Dam1 PF08653.5 gi|55378582|ref|YP_136432.1| - 0.14 11.9 14.0 5.9 6.7 0.0 6.5 4 2 3 7 7 7 0 DASH complex subunit Dam1 ABC_tran PF00005.22 gi|55378582|ref|YP_136432.1| - 0.19 12.0 0.0 0.19 12.0 0.0 5.4 2 1 1 3 3 1 0 ABC transporter AAA_27 PF13514.1 gi|55378582|ref|YP_136432.1| - 0.25 8.9 0.0 0.25 8.9 0.0 3.2 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|55378582|ref|YP_136432.1| - 0.34 10.7 0.0 0.34 10.7 0.0 4.1 4 2 0 4 4 3 0 AAA domain Spc7 PF08317.6 gi|55378582|ref|YP_136432.1| - 0.39 9.3 98.3 0.58 8.7 15.2 5.8 1 1 2 5 5 5 0 Spc7 kinetochore protein DUF4200 PF13863.1 gi|55378582|ref|YP_136432.1| - 1.7 8.6 111.7 0.031 14.2 14.7 6.8 2 1 2 5 5 5 0 Domain of unknown function (DUF4200) DUF3584 PF12128.3 gi|55378582|ref|YP_136432.1| - 2 5.6 106.0 0.033 11.5 30.6 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3584) Metallophos_2 PF12850.2 gi|55378583|ref|YP_136433.1| - 8.3e-15 54.9 0.2 1.7e-14 53.9 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55378583|ref|YP_136433.1| - 3.3e-12 46.2 1.1 4.7e-12 45.7 0.6 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase ArgK PF03308.11 gi|55378584|ref|YP_136434.1| - 0.063 12.0 0.1 0.072 11.8 0.0 1.1 1 0 0 1 1 1 0 ArgK protein Consortin_C PF15281.1 gi|55378585|ref|YP_136435.1| - 0.1 12.0 0.3 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 Consortin C-terminus OppC_N PF12911.2 gi|55378585|ref|YP_136435.1| - 0.65 9.4 2.9 1.3 8.4 2.0 1.5 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Reo_sigmaC PF04582.7 gi|55378586|ref|YP_136436.1| - 0.0028 16.9 1.5 0.0032 16.7 1.1 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|55378586|ref|YP_136436.1| - 0.0076 16.4 0.1 0.076 13.2 0.0 2.3 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Osmo_CC PF08946.5 gi|55378586|ref|YP_136436.1| - 0.021 14.8 0.0 0.056 13.4 0.0 1.8 1 0 0 1 1 1 0 Osmosensory transporter coiled coil Tropomyosin_1 PF12718.2 gi|55378586|ref|YP_136436.1| - 0.045 13.6 2.7 0.068 13.0 1.9 1.3 1 0 0 1 1 1 0 Tropomyosin like IncA PF04156.9 gi|55378586|ref|YP_136436.1| - 0.05 13.1 0.1 0.072 12.6 0.1 1.3 1 0 0 1 1 1 0 IncA protein Snapin_Pallidin PF14712.1 gi|55378586|ref|YP_136436.1| - 0.061 13.6 0.0 0.15 12.4 0.0 1.6 2 0 0 2 2 2 0 Snapin/Pallidin Baculo_PEP_C PF04513.7 gi|55378586|ref|YP_136436.1| - 0.13 12.1 0.6 0.45 10.3 0.1 1.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1515 PF07439.6 gi|55378586|ref|YP_136436.1| - 0.17 11.6 1.8 2.3 8.0 0.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Cortex-I_coil PF09304.5 gi|55378586|ref|YP_136436.1| - 0.22 11.5 1.6 0.34 10.9 1.1 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil DUF3563 PF12086.3 gi|55378586|ref|YP_136436.1| - 1.7 8.4 5.1 1.8 8.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3563) UPF0184 PF03670.8 gi|55378586|ref|YP_136436.1| - 3.5 7.8 6.6 1.6 8.9 0.1 2.9 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0184) ABM PF03992.11 gi|55378587|ref|YP_136437.1| - 0.0031 17.4 0.0 0.0064 16.5 0.0 1.6 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase T2SE PF00437.15 gi|55378589|ref|YP_136439.1| - 5.9e-19 68.0 0.0 8.1e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|55378589|ref|YP_136439.1| - 0.0002 21.3 0.3 0.00029 20.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|55378589|ref|YP_136439.1| - 0.0067 15.9 0.1 0.018 14.5 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|55378589|ref|YP_136439.1| - 0.025 14.8 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|55378589|ref|YP_136439.1| - 0.029 13.9 0.4 0.076 12.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|55378589|ref|YP_136439.1| - 0.033 14.3 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|55378589|ref|YP_136439.1| - 0.034 13.2 0.0 0.077 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|55378589|ref|YP_136439.1| - 0.042 13.2 0.1 0.077 12.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|55378589|ref|YP_136439.1| - 0.082 13.2 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|55378589|ref|YP_136439.1| - 0.097 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|55378589|ref|YP_136439.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain YokU PF14122.1 gi|55378589|ref|YP_136439.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 YokU-like protein AAA_19 PF13245.1 gi|55378589|ref|YP_136439.1| - 0.89 9.3 6.8 6 6.6 4.4 2.6 2 1 0 2 2 2 0 Part of AAA domain DUF2850 PF11012.3 gi|55378591|ref|YP_136441.1| - 0.00016 21.8 0.0 0.00024 21.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2850) SBP_bac_3 PF00497.15 gi|55378593|ref|YP_136443.1| - 0.021 14.0 0.9 0.022 14.0 0.6 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF1731 PF08338.6 gi|55378596|ref|YP_136446.1| - 0.0029 17.0 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) DHH PF01368.15 gi|55378597|ref|YP_136447.1| - 2e-12 46.9 0.0 3.6e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|55378597|ref|YP_136447.1| - 1.7e-06 27.6 2.1 4.1e-06 26.3 1.4 1.7 1 1 0 1 1 1 1 DHHA1 domain Aldo_ket_red PF00248.16 gi|55378598|ref|YP_136448.1| - 1.7e-36 125.4 0.0 3e-35 121.4 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF2322 PF10084.4 gi|55378598|ref|YP_136448.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) Raffinose_syn PF05691.7 gi|55378598|ref|YP_136448.1| - 0.16 9.4 0.0 0.25 8.8 0.0 1.2 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 DUF1451 PF07295.6 gi|55378599|ref|YP_136449.1| - 0.011 15.4 0.1 0.013 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|55378599|ref|YP_136449.1| - 0.017 14.9 0.3 0.021 14.6 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger zf-IS66 PF13005.2 gi|55378599|ref|YP_136449.1| - 0.034 14.1 0.2 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|55378599|ref|YP_136449.1| - 0.046 13.0 3.1 2.1 7.7 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|55378599|ref|YP_136449.1| - 0.055 13.4 3.7 0.13 12.2 2.5 1.6 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|55378599|ref|YP_136449.1| - 0.067 13.1 1.0 0.099 12.6 0.7 1.3 1 0 0 1 1 1 0 Zinc ribbon domain C1_4 PF07975.7 gi|55378599|ref|YP_136449.1| - 0.084 12.8 0.2 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain Nudix_N_2 PF14803.1 gi|55378599|ref|YP_136449.1| - 0.1 12.2 2.4 0.76 9.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF3279 PF11682.3 gi|55378599|ref|YP_136449.1| - 0.11 12.0 0.2 0.21 11.1 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3279) DZR PF12773.2 gi|55378599|ref|YP_136449.1| - 0.17 11.7 1.6 0.35 10.7 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|55378599|ref|YP_136449.1| - 0.19 10.9 3.1 0.4 9.9 2.1 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF1272 PF06906.6 gi|55378599|ref|YP_136449.1| - 0.4 10.5 3.7 38 4.2 2.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.1 gi|55378599|ref|YP_136449.1| - 0.73 9.6 3.1 2 8.1 2.1 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|55378599|ref|YP_136449.1| - 0.95 9.2 3.6 0.48 10.1 0.5 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MFS_1 PF07690.11 gi|55378600|ref|YP_136450.1| - 1.6e-26 92.9 51.6 1.3e-23 83.2 23.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily NUDIX PF00293.23 gi|55378602|ref|YP_136452.1| - 1.9e-17 63.1 0.0 2.4e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Bac_luciferase PF00296.15 gi|55378603|ref|YP_136453.1| - 0.00018 20.7 1.6 0.00056 19.1 1.1 1.9 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.19 gi|55378604|ref|YP_136454.1| - 5.1e-63 213.1 11.8 5.9e-63 212.9 8.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55378604|ref|YP_136454.1| - 4.2e-05 23.4 5.3 9.4e-05 22.3 2.8 2.3 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|55378604|ref|YP_136454.1| - 4.4e-05 23.7 1.7 4.4e-05 23.7 1.1 3.1 2 2 2 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55378604|ref|YP_136454.1| - 0.00013 20.5 2.0 0.0037 15.8 0.7 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|55378604|ref|YP_136454.1| - 0.00019 21.6 0.1 0.00046 20.4 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|55378604|ref|YP_136454.1| - 0.00022 20.4 3.4 0.00022 20.3 1.4 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|55378604|ref|YP_136454.1| - 0.00023 21.1 3.1 0.0037 17.1 2.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55378604|ref|YP_136454.1| - 0.0013 18.8 1.2 0.03 14.3 0.8 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55378604|ref|YP_136454.1| - 0.0014 17.7 0.1 0.0027 16.8 0.1 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|55378604|ref|YP_136454.1| - 0.0018 17.2 8.5 0.0028 16.5 5.9 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|55378604|ref|YP_136454.1| - 0.0026 17.5 1.2 0.012 15.3 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|55378604|ref|YP_136454.1| - 0.0047 16.5 1.2 0.0072 15.9 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|55378604|ref|YP_136454.1| - 0.0048 16.9 9.6 0.48 10.3 2.0 2.7 2 1 0 2 2 2 2 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|55378604|ref|YP_136454.1| - 0.0063 15.9 0.3 0.013 14.8 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.2 gi|55378604|ref|YP_136454.1| - 0.0099 15.0 3.8 0.012 14.7 2.7 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|55378604|ref|YP_136454.1| - 0.033 13.0 1.3 0.046 12.5 0.4 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|55378604|ref|YP_136454.1| - 0.047 13.4 0.2 0.11 12.2 0.2 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|55378604|ref|YP_136454.1| - 0.12 11.7 3.2 0.23 10.9 1.2 2.4 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|55378604|ref|YP_136454.1| - 0.19 10.3 1.8 0.32 9.5 1.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase HSP20 PF00011.16 gi|55378605|ref|YP_136455.1| - 1.9e-08 34.0 0.0 3.3e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DUF429 PF04250.8 gi|55378606|ref|YP_136456.1| - 2.1e-06 27.1 0.1 4.6e-06 26.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF429) CHASE2 PF05226.6 gi|55378606|ref|YP_136456.1| - 0.11 11.7 0.0 0.25 10.5 0.0 1.6 1 1 1 2 2 2 0 CHASE2 domain ABC_membrane PF00664.18 gi|55378607|ref|YP_136457.1| - 8.9e-37 126.9 1.9 1.2e-36 126.5 1.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|55378607|ref|YP_136457.1| - 1.4e-32 112.8 0.0 2.6e-32 111.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|55378607|ref|YP_136457.1| - 0.0002 20.6 0.0 0.0011 18.2 0.0 1.4 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|55378607|ref|YP_136457.1| - 0.0018 17.3 0.1 0.0061 15.6 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|55378607|ref|YP_136457.1| - 0.0065 17.2 2.1 0.06 14.1 0.8 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|55378607|ref|YP_136457.1| - 0.016 14.7 0.1 0.045 13.2 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain PrgI PF12666.2 gi|55378607|ref|YP_136457.1| - 0.024 14.7 0.7 0.51 10.5 0.0 2.6 2 0 0 2 2 2 0 PrgI family protein ABC_ATPase PF09818.4 gi|55378607|ref|YP_136457.1| - 0.025 13.1 0.7 0.11 11.1 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_21 PF13304.1 gi|55378607|ref|YP_136457.1| - 0.028 14.4 0.0 7.3 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|55378607|ref|YP_136457.1| - 0.038 13.4 4.4 0.2 11.0 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.1 gi|55378607|ref|YP_136457.1| - 0.093 12.2 0.2 0.44 10.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|55378607|ref|YP_136457.1| - 0.11 11.5 0.0 1 8.2 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain DUF258 PF03193.11 gi|55378607|ref|YP_136457.1| - 0.23 10.6 0.0 0.41 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Na_H_antiporter PF03553.9 gi|55378608|ref|YP_136458.1| - 1.3e-57 195.1 36.6 1e-56 192.2 12.4 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family HrpB4 PF09502.5 gi|55378608|ref|YP_136458.1| - 0.04 13.0 0.1 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) Radical_SAM PF04055.16 gi|55378610|ref|YP_136460.1| - 1.3e-16 61.2 0.1 1.4e-15 57.8 0.0 2.7 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|55378610|ref|YP_136460.1| - 3.9e-05 23.1 0.0 0.00014 21.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|55378610|ref|YP_136460.1| - 0.0003 20.5 0.0 0.0013 18.5 0.0 2.0 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_3 PF12836.2 gi|55378610|ref|YP_136460.1| - 0.00041 20.2 0.0 0.0012 18.7 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|55378610|ref|YP_136460.1| - 0.046 13.5 0.0 0.2 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif UPF0104 PF03706.8 gi|55378611|ref|YP_136461.1| - 3e-31 108.7 27.7 4.2e-31 108.3 19.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|55378611|ref|YP_136461.1| - 1.8e-25 89.5 0.0 2.5e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55378611|ref|YP_136461.1| - 2.9e-14 53.4 0.3 5.6e-14 52.5 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55378611|ref|YP_136461.1| - 5.7e-07 28.8 0.0 7.8e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|55378611|ref|YP_136461.1| - 0.0012 19.0 0.2 0.0022 18.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TFIIB PF00382.14 gi|55378612|ref|YP_136462.1| - 7e-41 137.8 0.8 1.2e-20 73.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55378612|ref|YP_136462.1| - 5.2e-16 57.6 3.7 3.2e-15 55.1 2.4 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|55378612|ref|YP_136462.1| - 0.092 12.4 1.2 0.2 11.3 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|55378612|ref|YP_136462.1| - 0.24 10.7 4.0 0.7 9.2 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|55378612|ref|YP_136462.1| - 0.26 10.8 0.9 0.5 9.9 0.6 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|55378612|ref|YP_136462.1| - 6.5 6.7 7.5 5.1 7.1 1.0 2.5 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|55378612|ref|YP_136462.1| - 7 6.7 7.0 54 3.8 3.4 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 N6_N4_Mtase PF01555.13 gi|55378613|ref|YP_136463.1| - 1.3e-31 109.8 0.0 1.8e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|55378613|ref|YP_136463.1| - 4.5e-15 55.7 0.2 7e-07 29.2 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55378613|ref|YP_136463.1| - 7.5e-06 26.3 0.0 1.9 9.0 0.0 3.4 3 0 0 3 3 3 2 Methyltransferase domain UPF0020 PF01170.13 gi|55378613|ref|YP_136463.1| - 0.00011 21.8 0.0 0.061 12.9 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|55378613|ref|YP_136463.1| - 0.0021 18.5 0.1 0.041 14.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378613|ref|YP_136463.1| - 0.0067 16.0 0.0 1.8 8.1 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain DHquinase_I PF01487.10 gi|55378614|ref|YP_136464.1| - 7.6e-45 153.2 0.0 9.2e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase TM2 PF05154.11 gi|55378615|ref|YP_136465.1| - 6.4e-08 32.6 5.1 9.8e-08 32.0 3.6 1.3 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.1 gi|55378615|ref|YP_136465.1| - 1.2e-07 30.6 0.4 1.8e-07 30.1 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55378615|ref|YP_136465.1| - 2.6e-05 23.9 1.8 3.6e-05 23.4 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55378615|ref|YP_136465.1| - 7.5e-05 22.0 0.9 0.00011 21.5 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|55378615|ref|YP_136465.1| - 0.00094 18.8 0.5 0.0016 18.0 0.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2628 PF10947.3 gi|55378615|ref|YP_136465.1| - 0.0021 17.8 1.6 0.0026 17.5 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2628) DUF4131 PF13567.1 gi|55378615|ref|YP_136465.1| - 0.0025 17.2 0.3 0.003 17.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Prok-RING_1 PF14446.1 gi|55378615|ref|YP_136465.1| - 0.0061 16.2 1.2 0.0083 15.8 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 NinF PF05810.7 gi|55378615|ref|YP_136465.1| - 0.023 14.4 0.4 0.046 13.5 0.3 1.5 1 0 0 1 1 1 0 NinF protein C4 PF01413.14 gi|55378615|ref|YP_136465.1| - 0.082 12.8 0.0 0.084 12.7 0.0 1.2 1 0 0 1 1 1 0 C-terminal tandem repeated domain in type 4 procollagen OrfB_Zn_ribbon PF07282.6 gi|55378615|ref|YP_136465.1| - 0.14 11.8 0.4 0.22 11.1 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|55378615|ref|YP_136465.1| - 0.15 11.8 1.1 0.24 11.2 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF2614 PF11023.3 gi|55378615|ref|YP_136465.1| - 0.34 10.7 0.1 0.34 10.7 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2614) DHQS PF01959.11 gi|55378616|ref|YP_136466.1| - 7.2e-150 498.5 5.0 8.1e-150 498.4 3.5 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|55378616|ref|YP_136466.1| - 6.2e-05 22.3 0.0 0.015 14.5 0.0 2.2 2 0 0 2 2 2 2 Hint module Hint_2 PF13403.1 gi|55378616|ref|YP_136466.1| - 0.00016 21.6 0.7 0.079 12.8 0.1 2.8 3 0 0 3 3 3 2 Hint domain QRPTase_C PF01729.14 gi|55378616|ref|YP_136466.1| - 0.0067 15.9 1.7 0.02 14.4 0.2 2.3 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain CbiA PF01656.18 gi|55378617|ref|YP_136467.1| - 1.2e-23 83.5 0.2 1.8e-23 82.9 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55378617|ref|YP_136467.1| - 8e-14 51.8 0.0 1.1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.4 gi|55378617|ref|YP_136467.1| - 8e-07 28.8 0.0 1.6e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|55378617|ref|YP_136467.1| - 1e-06 28.0 0.2 2.5e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|55378617|ref|YP_136467.1| - 3e-06 26.7 0.1 5.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|55378617|ref|YP_136467.1| - 4.2e-05 22.7 0.2 0.00016 20.8 0.1 1.9 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|55378617|ref|YP_136467.1| - 5.6e-05 22.4 0.1 0.027 13.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|55378617|ref|YP_136467.1| - 7.3e-05 22.4 1.9 0.00087 18.9 1.3 2.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|55378617|ref|YP_136467.1| - 0.023 14.1 0.4 0.13 11.6 0.1 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|55378617|ref|YP_136467.1| - 0.048 13.1 0.1 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DeoC PF01791.4 gi|55378618|ref|YP_136468.1| - 3e-45 154.3 0.1 3.7e-45 154.0 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|55378618|ref|YP_136468.1| - 5.8e-05 22.4 0.1 0.00011 21.5 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.19 gi|55378618|ref|YP_136468.1| - 0.0084 15.5 0.3 0.0084 15.5 0.2 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|55378618|ref|YP_136468.1| - 0.0094 15.0 0.1 0.86 8.6 0.0 2.6 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|55378618|ref|YP_136468.1| - 0.018 14.0 0.0 0.032 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ThiG PF05690.9 gi|55378618|ref|YP_136468.1| - 0.018 14.1 1.6 0.022 13.8 0.2 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DSHCT PF08148.7 gi|55378618|ref|YP_136468.1| - 0.094 11.9 0.0 2 7.6 0.0 2.1 2 0 0 2 2 2 0 DSHCT (NUC185) domain RuvA_C PF07499.8 gi|55378618|ref|YP_136468.1| - 0.12 12.6 3.8 0.21 11.7 0.6 2.7 3 0 0 3 3 3 0 RuvA, C-terminal domain Trp_syntA PF00290.15 gi|55378619|ref|YP_136469.1| - 1.6e-85 285.7 0.0 9.2e-85 283.2 0.0 1.8 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|55378619|ref|YP_136469.1| - 2.2e-05 23.8 0.3 0.00019 20.7 0.2 2.0 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|55378619|ref|YP_136469.1| - 0.001 18.3 0.1 0.002 17.4 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PA PF02225.17 gi|55378619|ref|YP_136469.1| - 0.0014 18.2 0.2 0.085 12.5 0.0 2.6 2 1 0 2 2 2 1 PA domain IGPS PF00218.16 gi|55378619|ref|YP_136469.1| - 0.17 10.9 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.20 gi|55378620|ref|YP_136470.1| - 1.2e-34 119.8 0.1 1.9e-34 119.3 0.1 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|55378621|ref|YP_136471.1| - 4.9e-68 228.9 0.0 5.5e-68 228.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|55378621|ref|YP_136471.1| - 6.6e-06 25.7 0.3 1.6e-05 24.4 0.2 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|55378621|ref|YP_136471.1| - 0.00015 20.7 3.5 0.00034 19.5 1.8 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|55378621|ref|YP_136471.1| - 0.00026 20.3 0.1 0.012 14.9 0.1 2.5 2 1 0 2 2 2 1 Histidine biosynthesis protein Amidohydro_3 PF07969.6 gi|55378621|ref|YP_136471.1| - 0.0007 18.9 1.4 0.0007 18.9 1.0 1.5 2 0 0 2 2 2 1 Amidohydrolase family NanE PF04131.9 gi|55378621|ref|YP_136471.1| - 0.00077 18.4 1.3 0.0023 16.9 0.9 2.0 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|55378621|ref|YP_136471.1| - 0.0019 17.1 0.0 0.0028 16.6 0.0 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|55378621|ref|YP_136471.1| - 0.0068 15.5 5.9 0.045 12.8 1.9 3.3 1 1 2 3 3 3 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|55378621|ref|YP_136471.1| - 0.015 14.5 6.9 0.0099 15.0 2.5 1.9 1 1 1 2 2 2 0 Nitronate monooxygenase PcrB PF01884.12 gi|55378621|ref|YP_136471.1| - 0.016 14.4 0.7 0.026 13.7 0.0 1.6 2 0 0 2 2 2 0 PcrB family IMPDH PF00478.20 gi|55378621|ref|YP_136471.1| - 0.038 12.8 0.4 0.15 10.9 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Acetyltransf_10 PF13673.1 gi|55378622|ref|YP_136472.1| - 1.7e-10 41.0 0.0 2.2e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55378622|ref|YP_136472.1| - 1.8e-08 34.2 0.0 3.5e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|55378622|ref|YP_136472.1| - 4.4e-05 23.6 0.0 5.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55378622|ref|YP_136472.1| - 0.0007 19.5 0.0 0.0009 19.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55378622|ref|YP_136472.1| - 0.00078 19.5 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|55378622|ref|YP_136472.1| - 0.077 12.9 0.2 0.13 12.1 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain MMR_HSR1_C PF08438.5 gi|55378623|ref|YP_136473.1| - 2.6e-29 101.6 0.0 4.3e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|55378623|ref|YP_136473.1| - 1.1e-19 70.5 0.0 3.4e-17 62.4 0.0 2.8 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.16 gi|55378623|ref|YP_136473.1| - 4.2e-10 39.3 0.0 1.1e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|55378623|ref|YP_136473.1| - 2.9e-05 23.4 0.0 0.00017 20.8 0.0 2.2 3 0 0 3 3 3 1 Ferrous iron transport protein B ArgK PF03308.11 gi|55378623|ref|YP_136473.1| - 0.088 11.5 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Miro PF08477.8 gi|55378623|ref|YP_136473.1| - 0.098 13.1 0.0 0.37 11.3 0.0 2.1 2 1 0 2 2 2 0 Miro-like protein Dynamin_N PF00350.18 gi|55378623|ref|YP_136473.1| - 0.12 12.1 0.1 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Dynamin family CRISPR_Cas2 PF09827.4 gi|55378624|ref|YP_136474.1| - 0.029 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas2 Thioredoxin_4 PF13462.1 gi|55378626|ref|YP_136476.1| - 3.6e-15 56.3 0.0 4.6e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55378626|ref|YP_136476.1| - 6.5e-09 35.9 0.0 3.2e-08 33.7 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|55378626|ref|YP_136476.1| - 1.7e-05 24.4 1.2 1.8e-05 24.4 0.3 1.4 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|55378626|ref|YP_136476.1| - 0.016 14.7 1.0 0.052 13.1 0.1 1.9 2 0 0 2 2 2 0 Thioredoxin UCR_Fe-S_N PF10399.4 gi|55378626|ref|YP_136476.1| - 0.1 11.8 1.2 0.2 10.8 0.8 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|55378626|ref|YP_136476.1| - 0.13 12.3 0.5 0.22 11.6 0.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S66 PF02016.10 gi|55378627|ref|YP_136477.1| - 1.3e-61 208.0 0.0 1.4e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase HTH_10 PF04967.7 gi|55378628|ref|YP_136478.1| - 1.3e-12 47.1 0.0 1.9e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Strep_67kDa_ant PF06100.6 gi|55378629|ref|YP_136479.1| - 3.1e-178 593.1 0.0 3.6e-178 593.0 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|55378629|ref|YP_136479.1| - 3.7e-06 26.8 0.1 7.9e-06 25.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DUF21 PF01595.15 gi|55378630|ref|YP_136480.1| - 1.4e-50 171.1 2.6 1.8e-50 170.7 1.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|55378630|ref|YP_136480.1| - 2.5e-21 75.2 0.1 9.1e-21 73.4 0.1 2.0 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|55378630|ref|YP_136480.1| - 1.2e-16 60.2 4.7 5.6e-09 35.6 1.2 2.4 2 0 0 2 2 2 2 CBS domain SCP2_2 PF13530.1 gi|55378631|ref|YP_136481.1| - 2.6e-47 161.0 0.1 3.5e-47 160.5 0.1 1.2 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|55378631|ref|YP_136481.1| - 7.3e-27 93.7 0.0 5e-26 91.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55378631|ref|YP_136481.1| - 3.8e-10 39.7 0.0 1.8e-07 31.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55378631|ref|YP_136481.1| - 7.7e-09 35.6 0.4 0.0044 17.1 0.2 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55378631|ref|YP_136481.1| - 5.8e-08 32.6 0.1 2.4e-06 27.4 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|55378631|ref|YP_136481.1| - 0.00073 19.3 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|55378631|ref|YP_136481.1| - 0.0075 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55378631|ref|YP_136481.1| - 0.008 15.9 0.0 0.02 14.6 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein BCD PF15461.1 gi|55378632|ref|YP_136482.1| - 2.3e-65 220.6 14.1 2.3e-65 220.6 9.8 1.3 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase DUF485 PF04341.7 gi|55378632|ref|YP_136482.1| - 0.16 11.7 0.1 0.16 11.7 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function, DUF485 Amino_oxidase PF01593.19 gi|55378633|ref|YP_136483.1| - 1.1e-23 84.0 0.5 2.4e-23 82.9 0.3 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|55378633|ref|YP_136483.1| - 7.8e-16 57.8 0.3 2.3e-15 56.3 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|55378633|ref|YP_136483.1| - 8.4e-15 54.5 4.1 1.2e-07 30.9 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|55378633|ref|YP_136483.1| - 5e-09 36.4 1.2 8.4e-06 26.1 0.3 3.3 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55378633|ref|YP_136483.1| - 1.3e-08 35.1 0.0 0.0013 18.8 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55378633|ref|YP_136483.1| - 8.7e-08 31.6 0.0 4e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55378633|ref|YP_136483.1| - 6e-06 26.2 0.0 0.00021 21.2 0.4 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55378633|ref|YP_136483.1| - 1.8e-05 23.3 0.1 0.024 13.1 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|55378633|ref|YP_136483.1| - 7.9e-05 21.6 2.9 0.00018 20.5 1.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|55378633|ref|YP_136483.1| - 0.00013 21.1 0.6 0.00026 20.1 0.4 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|55378633|ref|YP_136483.1| - 0.00047 19.1 1.1 0.00074 18.4 0.8 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|55378633|ref|YP_136483.1| - 0.0016 17.6 0.2 0.0034 16.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Strep_67kDa_ant PF06100.6 gi|55378633|ref|YP_136483.1| - 0.096 11.0 0.0 0.15 10.3 0.0 1.3 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family 3HCDH_N PF02737.13 gi|55378633|ref|YP_136483.1| - 0.17 11.5 0.5 0.29 10.7 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55378633|ref|YP_136483.1| - 0.18 11.2 0.6 0.87 9.0 0.2 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pribosyltran PF00156.22 gi|55378634|ref|YP_136484.1| - 2e-18 66.2 0.7 2.9e-18 65.7 0.5 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|55378634|ref|YP_136484.1| - 0.0014 17.8 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|55378634|ref|YP_136484.1| - 0.007 15.6 0.1 0.012 14.8 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase EutN_CcmL PF03319.8 gi|55378634|ref|YP_136484.1| - 0.052 13.9 0.2 0.093 13.1 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutN/carboxysome DsbB PF02600.11 gi|55378636|ref|YP_136486.1| - 7.8e-13 48.4 5.6 1.9e-12 47.2 3.9 1.6 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Aldo_ket_red PF00248.16 gi|55378637|ref|YP_136487.1| - 2.7e-74 249.5 0.0 3.4e-74 249.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MFS_1 PF07690.11 gi|55378638|ref|YP_136488.1| - 7.8e-14 51.1 28.4 7.8e-14 51.1 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|55378638|ref|YP_136488.1| - 0.0058 15.2 2.3 0.0058 15.2 1.6 2.9 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|55378638|ref|YP_136488.1| - 0.64 9.8 10.0 0.16 11.7 0.2 4.0 3 1 1 5 5 5 0 MFS_1 like family HhH-GPD PF00730.20 gi|55378639|ref|YP_136489.1| - 4.1e-21 75.3 0.0 6e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|55378639|ref|YP_136489.1| - 0.00034 20.6 7.3 0.00082 19.4 5.1 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|55378639|ref|YP_136489.1| - 0.013 15.2 0.0 0.035 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF732 PF05305.9 gi|55378639|ref|YP_136489.1| - 0.019 15.0 0.1 0.058 13.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF2400 PF09674.5 gi|55378639|ref|YP_136489.1| - 0.07 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Copper-bind PF00127.15 gi|55378640|ref|YP_136490.1| - 5.5e-16 58.6 0.1 1.5e-15 57.2 0.1 1.8 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SAM_adeno_trans PF01887.11 gi|55378641|ref|YP_136491.1| - 9.2e-80 267.4 0.9 1e-79 267.2 0.7 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|55378642|ref|YP_136492.1| - 8.3e-18 64.9 0.1 1.2e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|55378642|ref|YP_136492.1| - 0.013 14.9 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.8 gi|55378643|ref|YP_136493.1| - 2.7e-35 121.5 4.5 4.2e-35 120.9 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|55378643|ref|YP_136493.1| - 4.1e-30 104.9 0.0 1.1e-22 80.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|55378643|ref|YP_136493.1| - 6.7e-18 64.6 0.1 7.4e-11 41.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|55378643|ref|YP_136493.1| - 5e-16 58.6 0.0 6.1e-09 35.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|55378643|ref|YP_136493.1| - 2.2e-11 43.1 0.9 0.0091 14.8 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|55378643|ref|YP_136493.1| - 6.2e-10 38.9 0.0 0.00072 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|55378643|ref|YP_136493.1| - 3.2e-09 36.3 0.7 7.9e-09 35.0 0.5 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|55378643|ref|YP_136493.1| - 1e-06 28.9 0.0 0.033 14.3 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|55378643|ref|YP_136493.1| - 6e-06 26.3 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|55378643|ref|YP_136493.1| - 5e-05 22.4 0.1 0.009 15.0 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|55378643|ref|YP_136493.1| - 0.00016 21.8 0.0 0.0097 16.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|55378643|ref|YP_136493.1| - 0.00034 20.2 0.1 0.45 10.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|55378643|ref|YP_136493.1| - 0.00062 18.7 0.1 0.024 13.5 0.0 2.8 3 0 0 3 3 3 1 Type II/IV secretion system protein TIP49 PF06068.8 gi|55378643|ref|YP_136493.1| - 0.00075 18.3 2.3 0.077 11.6 0.0 2.8 4 0 0 4 4 4 1 TIP49 C-terminus AAA_30 PF13604.1 gi|55378643|ref|YP_136493.1| - 0.0014 18.2 0.0 0.022 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|55378643|ref|YP_136493.1| - 0.0015 18.2 0.0 0.0044 16.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_PrkA PF08298.6 gi|55378643|ref|YP_136493.1| - 0.0032 16.2 0.0 0.18 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_18 PF13238.1 gi|55378643|ref|YP_136493.1| - 0.0058 16.9 0.0 0.025 14.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55378643|ref|YP_136493.1| - 0.0069 16.2 0.1 0.034 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|55378643|ref|YP_136493.1| - 0.0072 15.5 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Zeta_toxin PF06414.7 gi|55378643|ref|YP_136493.1| - 0.01 14.9 0.0 0.024 13.7 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_2 PF07724.9 gi|55378643|ref|YP_136493.1| - 0.017 15.0 0.4 4.9 7.0 0.0 3.2 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|55378643|ref|YP_136493.1| - 0.02 13.8 0.0 0.043 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|55378643|ref|YP_136493.1| - 0.025 14.8 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|55378643|ref|YP_136493.1| - 0.027 13.9 0.0 0.056 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|55378643|ref|YP_136493.1| - 0.031 13.9 0.0 0.07 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|55378643|ref|YP_136493.1| - 0.053 13.4 0.6 0.28 11.1 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|55378643|ref|YP_136493.1| - 0.086 13.6 1.3 1.2 9.9 0.0 2.8 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|55378643|ref|YP_136493.1| - 0.094 11.3 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Parvo_NS1 PF01057.12 gi|55378643|ref|YP_136493.1| - 0.1 11.4 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Abi PF02517.11 gi|55378644|ref|YP_136494.1| - 3.1e-09 36.8 7.3 3.1e-09 36.8 5.1 2.4 3 0 0 3 3 3 1 CAAX protease self-immunity PSI_8 PF00796.13 gi|55378644|ref|YP_136494.1| - 6.6 6.4 8.3 2.2 7.9 1.5 3.3 3 0 0 3 3 3 0 Photosystem I reaction centre subunit VIII DNA_binding_1 PF01035.15 gi|55378645|ref|YP_136495.1| - 8.5e-10 38.2 0.0 1.2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain GDPD PF03009.12 gi|55378646|ref|YP_136496.1| - 1.1e-20 74.1 0.5 2.5e-20 73.0 0.3 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family TAT_signal PF10518.4 gi|55378646|ref|YP_136496.1| - 0.072 13.1 2.3 0.2 11.7 1.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DS PF01916.12 gi|55378647|ref|YP_136497.1| - 1.3e-78 264.2 0.0 1.5e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|55378647|ref|YP_136497.1| - 2.1e-05 24.2 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family Peptidase_M22 PF00814.20 gi|55378647|ref|YP_136497.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycoprotease family AzlC PF03591.9 gi|55378648|ref|YP_136498.1| - 6.5e-43 146.1 11.1 6.5e-43 146.1 7.7 1.7 2 1 0 2 2 2 1 AzlC protein AzlD PF05437.7 gi|55378649|ref|YP_136499.1| - 6.8e-22 77.2 8.2 7.6e-22 77.1 5.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) SprT-like PF10263.4 gi|55378650|ref|YP_136500.1| - 2.9e-07 30.2 1.4 5.4e-07 29.3 1.0 1.5 1 1 0 1 1 1 1 SprT-like family DUF4157 PF13699.1 gi|55378650|ref|YP_136500.1| - 0.038 14.1 2.7 0.65 10.1 1.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4157) zf-C3HC4_3 PF13920.1 gi|55378650|ref|YP_136500.1| - 0.054 13.1 0.5 0.11 12.1 0.3 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Tox-MPTase3 PF15639.1 gi|55378650|ref|YP_136500.1| - 0.059 13.1 0.2 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Metallopeptidase toxin 3 NIF3 PF01784.13 gi|55378651|ref|YP_136501.1| - 9.5e-53 179.2 0.0 1.1e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|55378651|ref|YP_136501.1| - 0.0065 15.7 0.0 0.014 14.7 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Lar_restr_allev PF14354.1 gi|55378652|ref|YP_136502.1| - 0.039 14.2 1.5 0.057 13.7 0.2 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar Golgin_A5 PF09787.4 gi|55378652|ref|YP_136502.1| - 1.3 7.4 6.8 1.8 7.0 4.7 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Macoilin PF09726.4 gi|55378652|ref|YP_136502.1| - 2.2 6.4 4.9 2.3 6.3 3.4 1.1 1 0 0 1 1 1 0 Transmembrane protein Cwf_Cwc_15 PF04889.7 gi|55378652|ref|YP_136502.1| - 2.8 7.6 7.6 3.5 7.2 5.2 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Abhydrolase_6 PF12697.2 gi|55378653|ref|YP_136503.1| - 1.3e-32 113.5 5.6 1.3e-32 113.5 3.9 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55378653|ref|YP_136503.1| - 1.1e-15 57.7 0.0 2.9e-15 56.3 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55378653|ref|YP_136503.1| - 4.1e-13 49.4 0.1 4.4e-11 42.7 0.1 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Amidohydro_1 PF01979.15 gi|55378654|ref|YP_136504.1| - 2.6e-24 86.4 1.0 2.6e-23 83.2 0.7 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|55378654|ref|YP_136504.1| - 3.9e-09 36.9 12.0 2.5e-08 34.2 8.3 2.0 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|55378654|ref|YP_136504.1| - 7e-08 31.7 0.0 1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|55378654|ref|YP_136504.1| - 1.9e-07 30.7 0.1 4e-07 29.7 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55378654|ref|YP_136504.1| - 0.00012 21.4 11.9 0.00029 20.2 3.8 2.4 1 1 1 2 2 2 2 Amidohydrolase family Arginase PF00491.16 gi|55378655|ref|YP_136505.1| - 9.2e-59 198.9 3.8 1.1e-58 198.7 2.6 1.0 1 0 0 1 1 1 1 Arginase family IPPT PF01715.12 gi|55378655|ref|YP_136505.1| - 0.033 13.2 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 IPP transferase eIF-5a PF01287.15 gi|55378656|ref|YP_136506.1| - 1.3e-05 25.0 0.7 2.2e-05 24.2 0.5 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|55378656|ref|YP_136506.1| - 0.004 17.0 0.0 0.029 14.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain DM13 PF10517.4 gi|55378656|ref|YP_136506.1| - 0.054 13.8 0.1 0.072 13.4 0.1 1.2 1 0 0 1 1 1 0 Electron transfer DM13 CobD_Cbib PF03186.8 gi|55378657|ref|YP_136507.1| - 5.2e-27 94.6 0.7 6.1e-27 94.4 0.5 1.2 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|55378658|ref|YP_136508.1| - 1.7e-18 67.0 6.9 2.1e-18 66.8 4.8 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.2 gi|55378659|ref|YP_136509.1| - 2.3e-18 66.7 0.2 4.2e-18 65.9 0.1 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|55378659|ref|YP_136509.1| - 0.00072 19.1 0.0 0.00097 18.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|55378659|ref|YP_136509.1| - 0.00081 19.0 0.0 0.0063 16.1 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|55378659|ref|YP_136509.1| - 0.031 13.2 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|55378659|ref|YP_136509.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Aminotran_1_2 PF00155.16 gi|55378660|ref|YP_136510.1| - 6.2e-38 130.6 0.0 7.1e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II TerB PF05099.8 gi|55378660|ref|YP_136510.1| - 0.021 14.5 0.8 1 9.1 0.1 2.3 2 0 0 2 2 2 0 Tellurite resistance protein TerB CbiZ PF01955.13 gi|55378661|ref|YP_136511.1| - 7.5e-46 156.3 2.1 8.6e-46 156.1 1.4 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobA_CobO_BtuR PF02572.10 gi|55378662|ref|YP_136512.1| - 7e-57 191.7 0.0 7.9e-57 191.6 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP GATase_3 PF07685.9 gi|55378663|ref|YP_136513.1| - 2.9e-36 124.4 0.0 5.3e-36 123.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|55378663|ref|YP_136513.1| - 2.5e-26 92.3 0.0 3.6e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|55378663|ref|YP_136513.1| - 1.7e-18 66.9 0.0 4.3e-18 65.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|55378663|ref|YP_136513.1| - 0.043 13.5 0.0 0.35 10.5 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|55378663|ref|YP_136513.1| - 0.47 11.2 1.9 4.6 8.0 1.3 2.3 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|55378664|ref|YP_136514.1| - 3.2e-26 91.9 0.1 4e-26 91.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55378664|ref|YP_136514.1| - 4.3e-09 36.4 0.0 6.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|55378664|ref|YP_136514.1| - 5.9e-08 32.2 0.0 0.00012 21.3 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|55378664|ref|YP_136514.1| - 3.4e-05 23.0 1.1 0.00015 20.9 0.8 1.8 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|55378664|ref|YP_136514.1| - 0.0021 17.1 1.4 0.003 16.6 0.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|55378664|ref|YP_136514.1| - 0.005 16.2 0.2 0.0086 15.4 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|55378664|ref|YP_136514.1| - 0.012 15.2 0.2 0.034 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|55378664|ref|YP_136514.1| - 0.014 14.4 0.2 0.03 13.3 0.1 1.5 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.9 gi|55378664|ref|YP_136514.1| - 0.017 14.1 0.1 0.026 13.4 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase ParA PF10609.4 gi|55378664|ref|YP_136514.1| - 0.041 13.7 0.1 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like AAA_17 PF13207.1 gi|55378664|ref|YP_136514.1| - 0.11 13.2 0.1 0.22 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55378664|ref|YP_136514.1| - 0.14 11.7 0.1 0.14 11.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain HTH_11 PF08279.7 gi|55378666|ref|YP_136516.1| - 8.9e-07 28.4 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.6 gi|55378666|ref|YP_136516.1| - 2.8e-05 23.3 0.0 3.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_20 PF12840.2 gi|55378666|ref|YP_136516.1| - 0.0001 22.0 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|55378666|ref|YP_136516.1| - 0.00095 19.3 0.1 0.0065 16.6 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|55378666|ref|YP_136516.1| - 0.0039 16.8 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|55378666|ref|YP_136516.1| - 0.0048 16.1 0.0 0.008 15.4 0.0 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|55378666|ref|YP_136516.1| - 0.011 15.5 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|55378666|ref|YP_136516.1| - 0.022 14.4 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family SgrR_N PF12793.2 gi|55378666|ref|YP_136516.1| - 0.024 14.6 0.0 0.027 14.4 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_30 PF13556.1 gi|55378666|ref|YP_136516.1| - 0.041 13.4 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_7 PF02796.10 gi|55378666|ref|YP_136516.1| - 0.048 13.5 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.6 gi|55378666|ref|YP_136516.1| - 0.049 13.4 0.1 0.093 12.5 0.0 1.5 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.1 gi|55378666|ref|YP_136516.1| - 0.065 12.8 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|55378666|ref|YP_136516.1| - 0.073 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|55378666|ref|YP_136516.1| - 0.092 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55378667|ref|YP_136517.1| - 1.9e-06 27.4 0.1 4.9e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55378667|ref|YP_136517.1| - 5.2e-05 23.4 0.1 0.00012 22.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|55378667|ref|YP_136517.1| - 0.0097 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|55378667|ref|YP_136517.1| - 0.019 14.5 0.0 0.063 12.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|55378667|ref|YP_136517.1| - 0.044 13.4 0.0 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FAD_binding_7 PF03441.9 gi|55378668|ref|YP_136518.1| - 4.3e-81 272.1 0.0 5.9e-81 271.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|55378668|ref|YP_136518.1| - 2.8e-20 72.7 0.0 1.7e-19 70.1 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase TAT_signal PF10518.4 gi|55378669|ref|YP_136519.1| - 0.27 11.3 0.3 0.27 11.3 0.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF4244 PF14029.1 gi|55378672|ref|YP_136522.1| - 1.8 7.6 6.5 0.77 8.8 2.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) PetG PF02529.10 gi|55378673|ref|YP_136523.1| - 0.24 10.9 2.0 0.48 9.9 1.4 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 T2SF PF00482.18 gi|55378674|ref|YP_136524.1| - 4.2e-18 65.4 2.9 1.5e-09 37.7 0.0 2.5 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|55378675|ref|YP_136525.1| - 6.1e-28 97.4 0.2 1.5e-27 96.1 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|55378675|ref|YP_136525.1| - 0.00034 20.9 0.0 0.00055 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55378675|ref|YP_136525.1| - 0.00096 18.6 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|55378675|ref|YP_136525.1| - 0.013 14.9 0.0 0.027 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|55378675|ref|YP_136525.1| - 0.015 15.1 0.0 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55378675|ref|YP_136525.1| - 0.021 15.6 0.1 0.12 13.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|55378675|ref|YP_136525.1| - 0.029 14.3 0.1 0.21 11.5 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|55378675|ref|YP_136525.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|55378675|ref|YP_136525.1| - 0.081 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|55378675|ref|YP_136525.1| - 0.1 12.8 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|55378675|ref|YP_136525.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TAT_signal PF10518.4 gi|55378676|ref|YP_136526.1| - 0.034 14.1 6.0 0.091 12.8 4.2 1.7 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PsbQ PF05757.6 gi|55378676|ref|YP_136526.1| - 0.11 11.9 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) HTH_10 PF04967.7 gi|55378677|ref|YP_136527.1| - 2.2e-18 65.5 0.1 3.5e-18 64.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378677|ref|YP_136527.1| - 0.0018 17.8 0.1 0.0045 16.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|55378677|ref|YP_136527.1| - 0.0099 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|55378677|ref|YP_136527.1| - 0.03 14.3 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like adh_short PF00106.20 gi|55378678|ref|YP_136528.1| - 6.8e-38 130.2 5.6 8.8e-38 129.8 3.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55378678|ref|YP_136528.1| - 4e-22 79.1 0.1 5.2e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55378678|ref|YP_136528.1| - 7.1e-21 74.6 3.1 9.4e-21 74.2 2.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55378678|ref|YP_136528.1| - 3.6e-06 26.5 0.3 1.3e-05 24.7 0.1 1.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55378678|ref|YP_136528.1| - 7e-06 26.1 5.3 1.4e-05 25.1 3.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|55378678|ref|YP_136528.1| - 0.0037 17.0 0.7 0.0094 15.7 0.5 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HEM4 PF02602.10 gi|55378678|ref|YP_136528.1| - 0.0067 15.6 0.3 0.015 14.5 0.2 1.6 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD THF_DHG_CYH_C PF02882.14 gi|55378678|ref|YP_136528.1| - 0.018 14.1 0.0 0.033 13.2 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHH_5 PF14520.1 gi|55378678|ref|YP_136528.1| - 0.042 14.0 3.4 0.12 12.5 2.3 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain ApbA PF02558.11 gi|55378678|ref|YP_136528.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|55378678|ref|YP_136528.1| - 0.13 11.4 0.4 0.74 9.0 0.2 2.0 2 0 0 2 2 2 0 NmrA-like family PSK_trans_fac PF07704.6 gi|55378678|ref|YP_136528.1| - 0.32 11.6 3.8 0.41 11.3 1.0 2.3 2 1 0 2 2 2 0 Rv0623-like transcription factor DAO PF01266.19 gi|55378679|ref|YP_136529.1| - 5.1e-63 213.1 6.3 6.1e-63 212.8 4.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|55378679|ref|YP_136529.1| - 1.6e-12 47.1 0.3 2.3e-12 46.6 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|55378679|ref|YP_136529.1| - 1.2e-11 44.1 5.6 1.7e-11 43.6 3.9 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|55378679|ref|YP_136529.1| - 1e-07 32.0 0.0 5.6e-06 26.3 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55378679|ref|YP_136529.1| - 4.3e-07 29.3 6.6 7.8e-07 28.5 4.6 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|55378679|ref|YP_136529.1| - 4.8e-06 25.8 2.1 0.0097 15.0 0.4 2.9 3 0 0 3 3 3 2 Thi4 family 3HCDH_N PF02737.13 gi|55378679|ref|YP_136529.1| - 0.001 18.7 0.3 0.0022 17.6 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|55378679|ref|YP_136529.1| - 0.0013 17.2 0.6 0.32 9.4 0.3 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|55378679|ref|YP_136529.1| - 0.0014 18.8 0.1 0.0096 16.1 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|55378679|ref|YP_136529.1| - 0.002 18.1 2.9 0.0069 16.3 1.8 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|55378679|ref|YP_136529.1| - 0.0028 18.0 1.0 0.008 16.5 0.6 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55378679|ref|YP_136529.1| - 0.0037 17.3 0.2 0.52 10.3 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55378679|ref|YP_136529.1| - 0.0083 15.0 1.8 0.33 9.7 0.4 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.11 gi|55378679|ref|YP_136529.1| - 0.015 14.7 0.4 0.029 13.8 0.3 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|55378679|ref|YP_136529.1| - 0.068 11.7 2.9 3.3 6.2 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|55378679|ref|YP_136529.1| - 0.069 12.0 2.9 0.85 8.4 0.6 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein THF_DHG_CYH PF00763.18 gi|55378679|ref|YP_136529.1| - 0.093 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TrkA_N PF02254.13 gi|55378679|ref|YP_136529.1| - 0.11 12.4 0.2 0.33 10.9 0.2 1.8 2 0 0 2 2 1 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|55378679|ref|YP_136529.1| - 0.33 10.9 9.2 0.26 11.2 1.0 2.8 2 1 0 2 2 2 0 NADH(P)-binding NAD_binding_9 PF13454.1 gi|55378679|ref|YP_136529.1| - 0.81 9.4 3.7 5 6.8 0.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiF PF00899.16 gi|55378679|ref|YP_136529.1| - 1.1 9.0 4.0 0.84 9.4 1.1 2.0 3 0 0 3 3 2 0 ThiF family IF-2B PF01008.12 gi|55378680|ref|YP_136530.1| - 4.4e-44 150.5 0.0 6.2e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.17 gi|55378680|ref|YP_136530.1| - 0.023 14.3 0.2 0.11 12.1 0.1 2.1 1 1 1 2 2 2 0 DeoR C terminal sensor domain INCA1 PF15142.1 gi|55378680|ref|YP_136530.1| - 0.11 12.2 0.2 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 INCA1 DUF883 PF05957.8 gi|55378680|ref|YP_136530.1| - 3.8 7.9 7.7 0.97 9.8 1.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Glyco_hydro_77 PF02446.12 gi|55378681|ref|YP_136531.1| - 7.2e-138 460.2 0.0 8.7e-138 459.9 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Glycos_transf_1 PF00534.15 gi|55378682|ref|YP_136532.1| - 3.9e-27 94.7 0.0 6.5e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55378682|ref|YP_136532.1| - 1.3e-16 60.9 0.0 1.9e-15 57.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55378682|ref|YP_136532.1| - 1.3e-09 38.4 0.0 2.3e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55378682|ref|YP_136532.1| - 0.00036 20.3 0.1 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|55378682|ref|YP_136532.1| - 0.00097 18.6 0.0 0.32 10.4 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain DUF3682 PF12446.3 gi|55378683|ref|YP_136533.1| - 0.087 13.1 0.2 0.1 12.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3682) NTP_transferase PF00483.18 gi|55378684|ref|YP_136534.1| - 3.4e-36 124.8 0.0 4.3e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55378684|ref|YP_136534.1| - 7e-09 35.9 0.0 8.8e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|55378684|ref|YP_136534.1| - 0.0062 15.9 1.5 0.12 11.9 0.0 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Glyco_hydro_15 PF00723.16 gi|55378685|ref|YP_136535.1| - 7.7e-36 123.6 4.4 1.2e-22 80.1 0.0 5.3 3 3 1 4 4 4 4 Glycosyl hydrolases family 15 Glucodextran_N PF09137.6 gi|55378685|ref|YP_136535.1| - 1.7e-33 115.9 0.6 3.4e-32 111.7 0.4 2.2 1 1 0 1 1 1 1 Glucodextranase, domain N SBBP PF06739.6 gi|55378685|ref|YP_136535.1| - 0.33 10.7 3.2 19 5.1 0.0 3.3 3 0 0 3 3 3 0 Beta-propeller repeat Alpha-amylase PF00128.19 gi|55378686|ref|YP_136536.1| - 1.3e-48 165.9 0.0 2.4e-47 161.8 0.0 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|55378686|ref|YP_136536.1| - 0.0015 18.5 0.4 0.014 15.5 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Radical_SAM PF04055.16 gi|55378686|ref|YP_136536.1| - 0.0024 18.0 0.0 0.35 11.0 0.0 2.5 2 0 0 2 2 2 1 Radical SAM superfamily Alpha-amylase_C PF02806.13 gi|55378686|ref|YP_136536.1| - 0.0035 17.4 0.0 0.025 14.7 0.0 2.3 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Glyco_hydro_42C PF08533.5 gi|55378686|ref|YP_136536.1| - 0.055 12.9 0.0 0.22 11.0 0.0 2.2 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain IclR PF01614.13 gi|55378688|ref|YP_136538.1| - 6.3e-30 103.5 0.2 8.7e-30 103.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55378688|ref|YP_136538.1| - 1.3e-05 24.7 0.1 4.2e-05 23.0 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|55378688|ref|YP_136538.1| - 0.00023 20.8 0.0 0.00066 19.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55378688|ref|YP_136538.1| - 0.00062 19.3 0.1 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55378688|ref|YP_136538.1| - 0.00077 19.1 0.0 0.0017 18.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|55378688|ref|YP_136538.1| - 0.0011 18.6 0.4 0.0064 16.1 0.0 2.3 3 0 0 3 3 3 1 MarR family PadR PF03551.9 gi|55378688|ref|YP_136538.1| - 0.017 14.8 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|55378688|ref|YP_136538.1| - 0.029 14.0 0.1 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|55378688|ref|YP_136538.1| - 0.066 12.8 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|55378688|ref|YP_136538.1| - 0.074 13.0 0.1 3.2 7.7 0.0 2.7 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HpcH_HpaI PF03328.9 gi|55378689|ref|YP_136539.1| - 4.8e-09 35.4 0.0 1.1e-08 34.2 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Glyoxalase PF00903.20 gi|55378690|ref|YP_136540.1| - 1.8e-17 63.4 0.4 2.2e-17 63.2 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|55378690|ref|YP_136540.1| - 2.4e-16 60.2 0.5 2.9e-16 60.0 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|55378690|ref|YP_136540.1| - 2.7e-13 49.8 0.3 4.8e-11 42.6 0.2 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|55378690|ref|YP_136540.1| - 3e-05 24.0 0.3 0.014 15.3 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain FAD-oxidase_C PF02913.14 gi|55378691|ref|YP_136541.1| - 2.8e-57 193.8 0.5 5.6e-57 192.8 0.3 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|55378691|ref|YP_136541.1| - 1.5e-37 128.1 0.2 3.4e-37 127.0 0.2 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|55378691|ref|YP_136541.1| - 1.5e-09 38.0 4.0 2.7e-09 37.2 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|55378691|ref|YP_136541.1| - 5.3e-09 35.9 5.0 1.1e-08 34.9 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|55378691|ref|YP_136541.1| - 6e-08 32.5 0.0 2.4e-05 24.2 0.0 2.9 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|55378691|ref|YP_136541.1| - 1.9e-06 28.2 2.3 1.2e-05 25.6 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55378691|ref|YP_136541.1| - 0.001 19.3 4.9 0.0024 18.2 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55378691|ref|YP_136541.1| - 0.0037 17.0 4.2 0.036 13.9 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55378691|ref|YP_136541.1| - 0.035 13.8 10.1 0.34 10.7 1.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55378691|ref|YP_136541.1| - 0.037 13.6 13.2 0.23 11.1 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55378691|ref|YP_136541.1| - 0.043 14.3 3.4 5 7.7 0.2 3.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|55378691|ref|YP_136541.1| - 0.051 13.5 10.0 1.2 9.1 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|55378691|ref|YP_136541.1| - 0.091 13.0 11.1 0.062 13.5 1.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|55378691|ref|YP_136541.1| - 0.79 10.2 12.2 0.96 9.9 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2088 PF09861.4 gi|55378692|ref|YP_136542.1| - 3e-05 23.1 0.0 6.2e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|55378692|ref|YP_136542.1| - 0.0012 18.3 0.1 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Beta-lactamase PF00144.19 gi|55378693|ref|YP_136543.1| - 5.1e-73 245.9 1.9 6.3e-73 245.6 1.3 1.0 1 0 0 1 1 1 1 Beta-lactamase IclR PF01614.13 gi|55378694|ref|YP_136544.1| - 7.5e-32 109.7 0.0 1.3e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55378694|ref|YP_136544.1| - 2e-09 36.9 0.0 4.8e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|55378694|ref|YP_136544.1| - 5.8e-08 32.4 0.1 1e-06 28.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55378694|ref|YP_136544.1| - 2.1e-07 30.1 0.0 5.6e-07 28.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55378694|ref|YP_136544.1| - 2.2e-07 30.4 0.0 8.1e-07 28.6 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|55378694|ref|YP_136544.1| - 3.5e-07 29.7 0.0 2.5e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|55378694|ref|YP_136544.1| - 3.9e-05 23.2 0.0 8.3e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55378694|ref|YP_136544.1| - 9.4e-05 22.0 0.0 0.0002 20.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|55378694|ref|YP_136544.1| - 0.00015 22.0 0.2 0.0014 18.8 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|55378694|ref|YP_136544.1| - 0.0022 17.5 0.0 0.0054 16.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|55378694|ref|YP_136544.1| - 0.005 16.4 0.0 0.034 13.7 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.1 gi|55378694|ref|YP_136544.1| - 0.0052 16.7 0.0 0.065 13.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|55378694|ref|YP_136544.1| - 0.0075 16.1 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TetR_N PF00440.18 gi|55378694|ref|YP_136544.1| - 0.015 14.9 1.4 0.046 13.3 0.1 2.5 3 0 0 3 3 2 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.1 gi|55378694|ref|YP_136544.1| - 0.018 15.2 0.0 0.041 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|55378694|ref|YP_136544.1| - 0.023 14.5 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_38 PF13936.1 gi|55378694|ref|YP_136544.1| - 0.045 13.3 0.1 0.12 11.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|55378694|ref|YP_136544.1| - 0.12 11.5 0.2 0.35 10.0 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|55378694|ref|YP_136544.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|55378694|ref|YP_136544.1| - 0.17 11.0 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Acyl-CoA_dh_1 PF00441.19 gi|55378695|ref|YP_136545.1| - 8.8e-31 107.0 0.5 1.3e-30 106.5 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55378695|ref|YP_136545.1| - 1.2e-23 83.8 0.0 3.1e-23 82.4 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55378695|ref|YP_136545.1| - 5.2e-22 77.1 0.1 1.1e-21 76.0 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|55378695|ref|YP_136545.1| - 1.3e-09 38.3 0.5 2e-09 37.8 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|55378695|ref|YP_136545.1| - 0.00094 18.6 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aldedh PF00171.17 gi|55378696|ref|YP_136546.1| - 6.9e-160 532.3 0.5 7.8e-160 532.1 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2115 PF09888.4 gi|55378696|ref|YP_136546.1| - 0.17 12.0 0.1 0.32 11.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) Antibiotic_NAT PF02522.9 gi|55378697|ref|YP_136547.1| - 7.8e-84 280.4 0.1 9e-84 280.2 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase ADH_N PF08240.7 gi|55378698|ref|YP_136548.1| - 1.6e-26 92.1 1.6 1.8e-26 92.0 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55378698|ref|YP_136548.1| - 8.3e-24 83.5 0.2 1.2e-23 83.0 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55378698|ref|YP_136548.1| - 3.9e-06 27.7 0.1 7e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|55378698|ref|YP_136548.1| - 0.0024 17.4 0.3 0.0049 16.4 0.2 1.6 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|55378698|ref|YP_136548.1| - 0.051 12.7 0.0 0.085 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|55378698|ref|YP_136548.1| - 0.059 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RRN7 PF11781.3 gi|55378698|ref|YP_136548.1| - 0.61 9.6 3.9 0.62 9.6 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 AMP-binding PF00501.23 gi|55378699|ref|YP_136549.1| - 3.5e-90 302.3 0.1 4.3e-90 302.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55378699|ref|YP_136549.1| - 3.9e-17 62.9 0.5 9.3e-17 61.7 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Saccharop_dh PF03435.13 gi|55378699|ref|YP_136549.1| - 0.0059 15.6 0.0 0.014 14.4 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase ECH PF00378.15 gi|55378701|ref|YP_136551.1| - 3.4e-32 111.5 0.0 3.9e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|55378701|ref|YP_136551.1| - 0.004 17.2 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region APH PF01636.18 gi|55378702|ref|YP_136552.1| - 4.8e-42 144.3 6.9 6.5e-42 143.9 4.8 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|55378702|ref|YP_136552.1| - 3.9e-05 22.9 0.0 5.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|55378702|ref|YP_136552.1| - 0.024 13.3 0.0 0.036 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) 3HCDH_N PF02737.13 gi|55378703|ref|YP_136553.1| - 5.9e-65 218.2 0.1 1e-64 217.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|55378703|ref|YP_136553.1| - 8.6e-56 188.7 0.0 1.3e-55 188.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|55378703|ref|YP_136553.1| - 7.8e-44 148.0 1.8 2.6e-22 79.0 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|55378703|ref|YP_136553.1| - 4.8e-06 26.3 0.0 8.6e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|55378703|ref|YP_136553.1| - 0.00042 20.4 0.0 0.0012 19.0 0.0 1.7 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|55378703|ref|YP_136553.1| - 0.001 18.9 0.0 0.003 17.4 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|55378703|ref|YP_136553.1| - 0.0084 16.5 0.7 0.028 14.8 0.5 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|55378703|ref|YP_136553.1| - 0.097 12.2 0.2 0.22 11.0 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|55378703|ref|YP_136553.1| - 0.099 12.0 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|55378704|ref|YP_136554.1| - 2.9e-36 124.8 5.0 2.9e-36 124.8 3.4 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55378704|ref|YP_136554.1| - 1.4e-18 66.1 0.1 3.5e-18 64.8 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|55378704|ref|YP_136554.1| - 2e-16 60.4 6.9 2e-16 60.4 4.8 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55378704|ref|YP_136554.1| - 9.4e-12 45.5 0.2 9.4e-12 45.5 0.2 2.4 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|55378704|ref|YP_136554.1| - 0.018 14.4 0.0 0.072 12.4 0.0 1.9 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal adh_short PF00106.20 gi|55378705|ref|YP_136555.1| - 1.1e-38 132.7 2.3 1.5e-38 132.3 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55378705|ref|YP_136555.1| - 3.7e-30 105.4 0.1 4.7e-30 105.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55378705|ref|YP_136555.1| - 5.8e-15 55.4 0.8 8.3e-15 54.9 0.6 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|55378705|ref|YP_136555.1| - 1.1e-06 28.8 0.5 1.7e-06 28.1 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55378705|ref|YP_136555.1| - 1.4e-06 27.9 0.1 2e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|55378705|ref|YP_136555.1| - 0.0008 18.4 0.1 0.002 17.1 0.1 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|55378705|ref|YP_136555.1| - 0.0012 18.5 0.0 0.0028 17.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|55378705|ref|YP_136555.1| - 0.0016 17.3 0.1 0.0029 16.5 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain FTR PF01913.13 gi|55378705|ref|YP_136555.1| - 0.0034 17.1 0.1 0.0054 16.4 0.1 1.3 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase F420_oxidored PF03807.12 gi|55378705|ref|YP_136555.1| - 0.0067 16.8 0.2 0.013 15.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3Beta_HSD PF01073.14 gi|55378705|ref|YP_136555.1| - 0.0088 14.7 0.3 0.012 14.3 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|55378705|ref|YP_136555.1| - 0.022 13.8 0.0 0.054 12.5 0.0 1.6 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.10 gi|55378705|ref|YP_136555.1| - 0.028 13.3 0.0 0.042 12.7 0.0 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein TrkA_N PF02254.13 gi|55378705|ref|YP_136555.1| - 0.043 13.8 0.3 0.069 13.1 0.2 1.4 1 0 0 1 1 1 0 TrkA-N domain DFP PF04127.10 gi|55378705|ref|YP_136555.1| - 0.07 12.7 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Shikimate_DH PF01488.15 gi|55378705|ref|YP_136555.1| - 0.099 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase MaoC_dehydratas PF01575.14 gi|55378706|ref|YP_136556.1| - 1.5e-25 88.9 0.9 1.9e-25 88.6 0.6 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|55378706|ref|YP_136556.1| - 2.7e-07 30.4 0.9 3.2e-07 30.1 0.6 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|55378706|ref|YP_136556.1| - 0.0046 17.0 0.1 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 Thioesterase superfamily FabA PF07977.8 gi|55378706|ref|YP_136556.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain Acyl-CoA_dh_1 PF00441.19 gi|55378707|ref|YP_136557.1| - 1.8e-55 187.1 2.4 3.2e-55 186.3 1.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|55378707|ref|YP_136557.1| - 1.7e-27 96.2 0.4 5.3e-27 94.6 0.3 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|55378707|ref|YP_136557.1| - 6.4e-26 91.1 5.6 1.2e-25 90.3 3.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|55378707|ref|YP_136557.1| - 1.9e-21 75.3 0.5 3.8e-21 74.3 0.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|55378707|ref|YP_136557.1| - 2.4e-05 23.8 2.2 0.00011 21.7 0.3 2.6 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|55378707|ref|YP_136557.1| - 0.0048 15.7 0.8 0.014 14.2 0.1 1.9 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Peripla_BP_6 PF13458.1 gi|55378708|ref|YP_136558.1| - 3e-43 148.5 9.3 3.7e-43 148.2 6.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|55378708|ref|YP_136558.1| - 8e-24 84.0 2.3 1.5e-23 83.1 1.6 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|55378708|ref|YP_136558.1| - 3e-19 69.0 0.7 9.9e-19 67.3 0.5 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|55378708|ref|YP_136558.1| - 0.0016 18.3 4.6 0.0053 16.6 3.2 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|55378709|ref|YP_136559.1| - 8.6e-31 106.8 46.3 1e-30 106.6 32.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55378710|ref|YP_136560.1| - 1.1e-32 113.0 26.6 1.8e-32 112.3 18.5 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|55378711|ref|YP_136561.1| - 5.4e-13 49.4 0.0 7.8e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|55378711|ref|YP_136561.1| - 9.4e-07 28.3 0.2 1.9e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|55378711|ref|YP_136561.1| - 0.0025 17.8 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|55378711|ref|YP_136561.1| - 0.068 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|55378712|ref|YP_136562.1| - 1.7e-29 102.8 0.0 2.6e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378712|ref|YP_136562.1| - 7.3e-12 45.8 0.0 1.4e-06 28.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55378712|ref|YP_136562.1| - 2.7e-06 26.8 0.1 6.6e-06 25.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55378712|ref|YP_136562.1| - 5.3e-05 23.6 0.2 0.00012 22.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55378712|ref|YP_136562.1| - 6e-05 22.3 0.3 0.0018 17.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|55378712|ref|YP_136562.1| - 0.0002 20.8 0.2 0.00035 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55378712|ref|YP_136562.1| - 0.0016 19.2 0.1 0.0046 17.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55378712|ref|YP_136562.1| - 0.0043 17.1 0.1 0.019 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55378712|ref|YP_136562.1| - 0.013 15.5 0.1 0.024 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|55378712|ref|YP_136562.1| - 0.021 14.5 0.4 0.3 10.8 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|55378712|ref|YP_136562.1| - 0.022 14.3 0.1 0.061 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|55378712|ref|YP_136562.1| - 0.023 13.7 0.0 0.053 12.5 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|55378712|ref|YP_136562.1| - 0.035 12.6 0.3 0.32 9.5 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|55378712|ref|YP_136562.1| - 0.046 13.6 0.4 0.47 10.4 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|55378712|ref|YP_136562.1| - 0.048 13.8 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|55378712|ref|YP_136562.1| - 0.09 12.6 0.0 0.63 9.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|55378712|ref|YP_136562.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|55378712|ref|YP_136562.1| - 0.12 11.4 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin HTH_10 PF04967.7 gi|55378715|ref|YP_136565.1| - 2.5e-17 62.1 0.1 4.4e-17 61.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378715|ref|YP_136565.1| - 1.4e-05 24.6 0.1 7.5e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|55378715|ref|YP_136565.1| - 0.0095 15.3 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55378715|ref|YP_136565.1| - 0.02 14.4 0.2 0.043 13.3 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55378715|ref|YP_136565.1| - 0.13 11.5 0.0 0.27 10.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Virul_fac_BrkB PF03631.10 gi|55378716|ref|YP_136566.1| - 1.7e-37 129.2 30.0 1.9e-37 129.0 20.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF2583 PF10762.4 gi|55378716|ref|YP_136566.1| - 7.9 6.7 6.4 0.83 9.8 0.3 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) Aldo_ket_red PF00248.16 gi|55378717|ref|YP_136567.1| - 4.6e-18 65.0 0.0 5.1e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MarR_2 PF12802.2 gi|55378717|ref|YP_136567.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 MarR family Aminotran_5 PF00266.14 gi|55378718|ref|YP_136568.1| - 9.2e-34 116.7 0.0 1.1e-33 116.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|55378718|ref|YP_136568.1| - 9.1e-05 20.9 0.0 0.00013 20.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|55378718|ref|YP_136568.1| - 0.00042 19.4 0.4 0.00066 18.8 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|55378718|ref|YP_136568.1| - 0.0037 17.1 0.1 0.012 15.4 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain Usp PF00582.21 gi|55378719|ref|YP_136569.1| - 1.2e-36 125.9 8.8 4.5e-19 69.0 0.4 2.1 2 0 0 2 2 2 2 Universal stress protein family HGTP_anticodon PF03129.15 gi|55378719|ref|YP_136569.1| - 0.1 12.5 0.1 5.6 6.9 0.0 2.6 2 0 0 2 2 2 0 Anticodon binding domain Aldolase PF01081.14 gi|55378719|ref|YP_136569.1| - 0.28 10.3 2.2 8.5 5.4 0.1 2.2 2 0 0 2 2 2 0 KDPG and KHG aldolase Transketolase_C PF02780.15 gi|55378719|ref|YP_136569.1| - 0.69 9.8 3.6 4.2 7.3 0.2 2.7 2 1 0 2 2 2 0 Transketolase, C-terminal domain DZR PF12773.2 gi|55378720|ref|YP_136570.1| - 2.2e-09 36.9 22.2 4.5e-07 29.5 6.9 1.9 1 1 2 3 3 3 3 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55378720|ref|YP_136570.1| - 5.3e-08 31.8 12.5 5.3e-06 25.4 2.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55378720|ref|YP_136570.1| - 5.8e-05 22.4 12.5 0.093 12.2 0.2 2.9 2 1 1 3 3 3 3 zinc-ribbon domain RHH_1 PF01402.16 gi|55378720|ref|YP_136570.1| - 7.1e-05 22.5 1.3 0.014 15.2 0.0 3.3 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family Nudix_N_2 PF14803.1 gi|55378720|ref|YP_136570.1| - 0.0014 18.2 12.5 0.38 10.4 0.4 3.6 3 1 0 3 3 3 2 Nudix N-terminal Prok-RING_1 PF14446.1 gi|55378720|ref|YP_136570.1| - 0.0025 17.4 1.8 0.0025 17.4 1.2 2.3 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 Cys_rich_KTR PF14205.1 gi|55378720|ref|YP_136570.1| - 0.0098 15.3 1.2 0.84 9.1 0.1 2.4 2 0 0 2 2 2 1 Cysteine-rich KTR zf-C4H2 PF10146.4 gi|55378720|ref|YP_136570.1| - 0.012 15.6 0.2 0.015 15.3 0.2 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein Band_3_cyto PF07565.8 gi|55378720|ref|YP_136570.1| - 0.035 13.6 0.4 0.057 12.9 0.3 1.3 1 0 0 1 1 1 0 Band 3 cytoplasmic domain DUF2191 PF09957.4 gi|55378720|ref|YP_136570.1| - 0.037 13.8 1.6 0.051 13.3 0.2 2.0 2 1 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2191) zf-NADH-PPase PF09297.6 gi|55378720|ref|YP_136570.1| - 0.057 12.9 12.7 0.43 10.1 0.1 3.7 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain DUF1902 PF08972.6 gi|55378720|ref|YP_136570.1| - 0.081 12.4 0.0 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) Zn_Tnp_IS91 PF14319.1 gi|55378720|ref|YP_136570.1| - 0.14 11.6 5.2 0.25 10.8 3.6 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C3HC4_3 PF13920.1 gi|55378720|ref|YP_136570.1| - 0.22 11.1 5.4 0.22 11.2 0.5 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.8 gi|55378720|ref|YP_136570.1| - 0.24 9.0 5.0 0.32 8.6 3.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.5 gi|55378720|ref|YP_136570.1| - 0.28 11.1 11.5 0.61 10.0 0.1 3.5 2 1 1 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|55378720|ref|YP_136570.1| - 0.29 10.9 7.5 0.12 12.1 2.9 2.0 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|55378720|ref|YP_136570.1| - 0.29 11.3 1.5 0.47 10.6 0.1 2.2 2 1 0 2 2 1 0 Ribosomal L32p protein family DUF2413 PF10310.4 gi|55378720|ref|YP_136570.1| - 1 8.1 5.6 1.2 7.8 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) NinF PF05810.7 gi|55378720|ref|YP_136570.1| - 1.2 9.0 5.1 0.31 10.8 0.7 2.1 1 1 0 2 2 2 0 NinF protein zf-UBR PF02207.15 gi|55378720|ref|YP_136570.1| - 1.6 8.4 8.2 3.7 7.3 5.7 1.6 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) C1_1 PF00130.17 gi|55378720|ref|YP_136570.1| - 2.4 7.9 8.0 0.94 9.2 3.2 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.6 gi|55378720|ref|YP_136570.1| - 2.6 7.4 6.7 2 7.7 0.1 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|55378720|ref|YP_136570.1| - 8.6 6.1 12.5 1.2e+02 2.4 8.2 2.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RHH_1 PF01402.16 gi|55378721|ref|YP_136571.1| - 6e-08 32.2 0.2 6e-08 32.2 0.1 1.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|55378721|ref|YP_136571.1| - 0.015 15.4 0.2 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) FtsZ_C PF12327.3 gi|55378722|ref|YP_136572.1| - 7.5e-36 122.1 0.7 7.5e-36 122.1 0.5 2.8 2 1 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|55378722|ref|YP_136572.1| - 4.1e-33 115.0 2.7 2.3e-32 112.5 1.9 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|55378722|ref|YP_136572.1| - 0.01 15.6 0.1 0.057 13.2 0.0 2.2 2 0 0 2 2 2 0 ThiF family ATP_bind_3 PF01171.15 gi|55378723|ref|YP_136573.1| - 1.5e-14 53.8 0.0 2.3e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|55378723|ref|YP_136573.1| - 8.5e-05 21.2 0.0 0.00011 20.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|55378723|ref|YP_136573.1| - 0.00046 19.1 0.0 0.00073 18.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.14 gi|55378723|ref|YP_136573.1| - 0.00088 19.1 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DUF2392 PF10288.4 gi|55378723|ref|YP_136573.1| - 0.0021 18.3 0.0 0.0045 17.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) Asn_synthase PF00733.16 gi|55378723|ref|YP_136573.1| - 0.0064 16.0 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|55378723|ref|YP_136573.1| - 0.039 13.2 0.3 0.32 10.2 0.0 2.5 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC DUF208 PF02677.9 gi|55378723|ref|YP_136573.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 Lar_restr_allev PF14354.1 gi|55378723|ref|YP_136573.1| - 0.88 9.9 5.6 59 4.0 0.1 3.5 3 0 0 3 3 3 0 Restriction alleviation protein Lar RecR PF02132.10 gi|55378723|ref|YP_136573.1| - 1.1 8.7 7.5 0.3 10.5 1.2 3.0 4 0 0 4 4 4 0 RecR protein DZR PF12773.2 gi|55378723|ref|YP_136573.1| - 3 7.7 9.7 1.2 9.0 0.7 3.3 3 0 0 3 3 3 0 Double zinc ribbon Abhydrolase_5 PF12695.2 gi|55378724|ref|YP_136574.1| - 3.3e-08 33.4 0.1 4.2e-08 33.0 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55378724|ref|YP_136574.1| - 1.5e-07 31.5 2.8 1.8e-07 31.2 2.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.8 gi|55378724|ref|YP_136574.1| - 0.017 14.7 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase DUF2332 PF10094.4 gi|55378725|ref|YP_136575.1| - 5.3e-107 357.7 1.4 6e-107 357.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) CopD PF05425.8 gi|55378728|ref|YP_136578.1| - 7.7e-10 38.9 3.8 7.7e-10 38.9 2.6 2.0 1 1 1 2 2 2 1 Copper resistance protein D DUF2214 PF09980.4 gi|55378728|ref|YP_136578.1| - 0.047 13.4 3.4 0.052 13.2 0.0 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2214) DUF2269 PF10027.4 gi|55378728|ref|YP_136578.1| - 2.1 8.1 7.8 8.2 6.1 5.4 2.0 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) Methyltransf_11 PF08241.7 gi|55378730|ref|YP_136580.1| - 9.1e-19 67.7 0.2 4e-18 65.7 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378730|ref|YP_136580.1| - 7.4e-13 48.3 0.2 4.1e-12 45.9 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55378730|ref|YP_136580.1| - 5.7e-12 45.6 0.0 7e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378730|ref|YP_136580.1| - 1.2e-10 41.6 1.0 3.2e-10 40.2 0.2 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378730|ref|YP_136580.1| - 1.8e-09 37.9 0.3 1.1e-08 35.4 0.2 2.3 2 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|55378730|ref|YP_136580.1| - 5.8e-09 35.5 0.1 1.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|55378730|ref|YP_136580.1| - 4.7e-08 32.4 0.1 2.1e-07 30.3 0.1 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|55378730|ref|YP_136580.1| - 7.3e-08 32.9 2.6 5.5e-07 30.1 1.8 2.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55378730|ref|YP_136580.1| - 3.6e-06 27.0 3.3 3.6e-06 27.0 2.3 2.3 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|55378730|ref|YP_136580.1| - 0.00029 20.5 0.0 0.00077 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|55378730|ref|YP_136580.1| - 0.00037 20.5 0.2 0.00053 20.0 0.1 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|55378730|ref|YP_136580.1| - 0.00037 20.1 0.2 0.0005 19.7 0.2 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|55378730|ref|YP_136580.1| - 0.00063 19.3 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|55378730|ref|YP_136580.1| - 0.00096 18.3 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|55378730|ref|YP_136580.1| - 0.0013 17.8 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|55378730|ref|YP_136580.1| - 0.0029 16.9 0.1 0.0082 15.5 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase small domain AP_endonuc_2 PF01261.19 gi|55378731|ref|YP_136581.1| - 4.1e-31 107.9 1.8 7.8e-31 107.0 0.9 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF4418 PF14387.1 gi|55378732|ref|YP_136582.1| - 0.24 11.1 3.6 0.33 10.7 2.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) YtpI PF14007.1 gi|55378732|ref|YP_136582.1| - 0.38 10.7 4.0 0.51 10.2 2.8 1.2 1 0 0 1 1 1 0 YtpI-like protein DUF1469 PF07332.6 gi|55378732|ref|YP_136582.1| - 6.3 6.5 9.6 8.4 6.1 6.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) HTH_10 PF04967.7 gi|55378733|ref|YP_136583.1| - 6.1e-13 48.1 0.0 1e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378733|ref|YP_136583.1| - 0.0042 16.7 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55378733|ref|YP_136583.1| - 0.021 14.6 0.0 0.087 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55378733|ref|YP_136583.1| - 0.077 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|55378733|ref|YP_136583.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain peroxidase PF00141.18 gi|55378734|ref|YP_136584.1| - 9.5e-92 306.6 0.0 1.6e-52 178.2 0.0 2.3 2 0 0 2 2 2 2 Peroxidase BPL_LplA_LipB PF03099.14 gi|55378735|ref|YP_136585.1| - 3.9e-12 46.2 0.0 6.2e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family TcpQ PF10671.4 gi|55378735|ref|YP_136585.1| - 0.07 13.0 0.0 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Toxin co-regulated pilus biosynthesis protein Q Cupin_2 PF07883.6 gi|55378736|ref|YP_136586.1| - 7.2e-11 41.4 0.9 1.5e-10 40.4 0.6 1.5 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|55378736|ref|YP_136586.1| - 0.0004 20.0 0.5 0.00075 19.1 0.3 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.7 gi|55378736|ref|YP_136586.1| - 0.00062 19.0 1.4 0.0013 17.9 1.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cupin_1 PF00190.17 gi|55378736|ref|YP_136586.1| - 0.0056 16.1 0.0 0.0088 15.4 0.0 1.3 1 0 0 1 1 1 1 Cupin Nudix_N_2 PF14803.1 gi|55378736|ref|YP_136586.1| - 0.0066 16.1 1.1 0.012 15.3 0.8 1.4 1 0 0 1 1 1 1 Nudix N-terminal Cupin_3 PF05899.7 gi|55378736|ref|YP_136586.1| - 0.022 14.1 0.4 0.06 12.7 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF861) Elf1 PF05129.8 gi|55378736|ref|YP_136586.1| - 0.042 13.5 0.1 0.074 12.7 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.1 gi|55378736|ref|YP_136586.1| - 0.053 13.2 1.0 0.17 11.5 0.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55378736|ref|YP_136586.1| - 0.07 13.0 2.3 0.14 12.1 1.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|55378736|ref|YP_136586.1| - 0.073 12.6 1.2 0.26 10.9 0.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|55378736|ref|YP_136586.1| - 0.083 12.8 0.7 0.14 12.0 0.5 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|55378736|ref|YP_136586.1| - 2.2 7.5 4.7 19 4.6 3.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain HTH_10 PF04967.7 gi|55378737|ref|YP_136587.1| - 9.4e-14 50.7 0.0 1.4e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378737|ref|YP_136587.1| - 0.036 13.7 0.0 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 MarR family Complex1_49kDa PF00346.14 gi|55378738|ref|YP_136588.1| - 9.8e-65 218.2 0.0 7.4e-41 139.9 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|55378738|ref|YP_136588.1| - 4.7e-29 100.6 0.1 8.7e-29 99.8 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PMSR PF01625.16 gi|55378739|ref|YP_136589.1| - 2.1e-66 222.6 2.2 2.4e-66 222.4 1.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4191 PF13829.1 gi|55378741|ref|YP_136591.1| - 0.23 10.5 1.6 0.25 10.4 1.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) VIT1 PF01988.14 gi|55378741|ref|YP_136591.1| - 0.24 10.8 2.2 0.28 10.6 1.5 1.1 1 0 0 1 1 1 0 VIT family AAA PF00004.24 gi|55378742|ref|YP_136592.1| - 1.3e-56 190.3 0.0 4.2e-46 156.4 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55378742|ref|YP_136592.1| - 6.8e-11 42.0 0.4 3.4e-05 23.5 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|55378742|ref|YP_136592.1| - 8.5e-10 38.8 1.0 0.0004 20.5 0.0 4.3 2 2 2 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|55378742|ref|YP_136592.1| - 4.9e-09 36.4 3.3 6.9e-05 22.9 0.0 3.2 2 1 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|55378742|ref|YP_136592.1| - 5e-09 35.6 0.2 1.3e-08 34.3 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 NACHT PF05729.7 gi|55378742|ref|YP_136592.1| - 1.6e-08 34.3 1.8 0.07 12.7 0.1 4.1 4 0 0 4 4 4 2 NACHT domain AAA_2 PF07724.9 gi|55378742|ref|YP_136592.1| - 2.1e-08 34.2 0.0 0.00011 22.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|55378742|ref|YP_136592.1| - 2.6e-08 33.4 6.4 0.049 13.0 0.3 3.6 2 2 1 3 3 3 3 AAA domain AAA_28 PF13521.1 gi|55378742|ref|YP_136592.1| - 1.6e-07 31.4 0.0 0.01 15.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|55378742|ref|YP_136592.1| - 1.8e-07 30.4 0.0 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|55378742|ref|YP_136592.1| - 5.2e-07 29.6 0.2 0.0014 18.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|55378742|ref|YP_136592.1| - 6e-07 30.3 0.1 0.0079 17.0 0.0 2.7 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|55378742|ref|YP_136592.1| - 1.2e-06 28.0 0.1 0.014 14.7 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.1 gi|55378742|ref|YP_136592.1| - 1.7e-06 27.9 0.0 0.0015 18.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|55378742|ref|YP_136592.1| - 2.5e-06 26.6 0.0 0.00058 18.9 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|55378742|ref|YP_136592.1| - 3.2e-05 23.5 4.5 0.0046 16.6 0.0 3.9 4 0 0 4 4 3 1 Part of AAA domain AAA_24 PF13479.1 gi|55378742|ref|YP_136592.1| - 5.3e-05 22.9 0.1 0.036 13.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|55378742|ref|YP_136592.1| - 0.00016 21.1 0.0 0.025 14.0 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|55378742|ref|YP_136592.1| - 0.00016 20.8 0.1 0.0075 15.4 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|55378742|ref|YP_136592.1| - 0.00033 20.9 0.0 0.24 11.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|55378742|ref|YP_136592.1| - 0.0004 20.7 0.0 0.57 10.4 0.0 2.5 2 0 0 2 2 2 1 ABC transporter DUF815 PF05673.8 gi|55378742|ref|YP_136592.1| - 0.00042 19.3 0.0 0.17 10.8 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|55378742|ref|YP_136592.1| - 0.00056 20.0 0.0 0.19 11.8 0.0 2.4 2 0 0 2 2 2 1 RNA helicase Molydop_binding PF01568.16 gi|55378742|ref|YP_136592.1| - 0.00061 19.5 0.3 0.0041 16.9 0.1 2.4 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Bac_DnaA PF00308.13 gi|55378742|ref|YP_136592.1| - 0.00065 19.4 0.0 0.094 12.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_3 PF07726.6 gi|55378742|ref|YP_136592.1| - 0.0013 18.2 0.0 0.21 11.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|55378742|ref|YP_136592.1| - 0.0024 16.7 0.0 0.11 11.3 0.0 2.3 2 0 0 2 2 2 1 MCM2/3/5 family AAA_29 PF13555.1 gi|55378742|ref|YP_136592.1| - 0.0031 17.0 0.0 2 8.0 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|55378742|ref|YP_136592.1| - 0.0054 16.7 0.0 0.092 12.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain MobB PF03205.9 gi|55378742|ref|YP_136592.1| - 0.0061 16.2 0.1 0.28 10.8 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|55378742|ref|YP_136592.1| - 0.01 15.3 0.0 1.8 8.0 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain TIP49 PF06068.8 gi|55378742|ref|YP_136592.1| - 0.011 14.4 0.0 0.047 12.3 0.0 1.8 2 0 0 2 2 2 0 TIP49 C-terminus KAP_NTPase PF07693.9 gi|55378742|ref|YP_136592.1| - 0.013 14.4 0.0 3.9 6.3 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain UPF0079 PF02367.12 gi|55378742|ref|YP_136592.1| - 0.015 14.9 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|55378742|ref|YP_136592.1| - 0.018 14.7 0.0 4.2 7.0 0.0 2.4 2 1 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|55378742|ref|YP_136592.1| - 0.019 13.8 0.0 1.7 7.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AFG1_ATPase PF03969.11 gi|55378742|ref|YP_136592.1| - 0.02 13.7 0.2 6.3 5.4 0.1 2.8 2 1 0 2 2 2 0 AFG1-like ATPase NTPase_1 PF03266.10 gi|55378742|ref|YP_136592.1| - 0.026 14.2 0.0 3.9 7.1 0.0 2.6 2 1 0 2 2 2 0 NTPase Miro PF08477.8 gi|55378742|ref|YP_136592.1| - 0.037 14.5 0.0 10 6.6 0.0 2.8 2 1 0 2 2 2 0 Miro-like protein PhoH PF02562.11 gi|55378742|ref|YP_136592.1| - 0.073 12.2 0.1 0.63 9.2 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein Viral_helicase1 PF01443.13 gi|55378742|ref|YP_136592.1| - 0.079 12.4 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Parvo_NS1 PF01057.12 gi|55378742|ref|YP_136592.1| - 0.086 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.14 gi|55378742|ref|YP_136592.1| - 0.088 12.2 0.2 15 4.9 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DAP3 PF10236.4 gi|55378742|ref|YP_136592.1| - 0.11 11.4 0.0 2.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_23 PF13476.1 gi|55378742|ref|YP_136592.1| - 0.32 11.3 0.0 3.8 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain YiaAB PF05360.9 gi|55378743|ref|YP_136593.1| - 0.075 12.5 0.7 0.075 12.5 0.5 1.9 2 0 0 2 2 2 0 yiaA/B two helix domain ATP-synt_C PF00137.16 gi|55378743|ref|YP_136593.1| - 0.13 12.1 5.4 1.2 9.0 0.7 2.1 1 1 1 2 2 2 0 ATP synthase subunit C NfeD PF01957.13 gi|55378743|ref|YP_136593.1| - 0.44 10.6 3.3 0.51 10.4 2.3 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Bac_rhodopsin PF01036.13 gi|55378744|ref|YP_136594.1| - 1.7e-67 226.9 20.5 1.9e-67 226.8 14.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Mut7-C PF01927.11 gi|55378745|ref|YP_136595.1| - 0.0012 18.8 1.9 0.011 15.7 1.3 1.9 1 1 0 1 1 1 1 Mut7-C RNAse domain TF_Zn_Ribbon PF08271.7 gi|55378745|ref|YP_136595.1| - 0.0017 17.6 1.0 0.038 13.2 0.8 2.4 1 1 1 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|55378745|ref|YP_136595.1| - 0.0087 15.9 1.7 1.5 8.8 0.0 2.5 2 0 0 2 2 2 1 Zinc ribbon domain ADK_lid PF05191.9 gi|55378745|ref|YP_136595.1| - 0.012 15.2 2.2 0.95 9.1 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Fib_alpha PF08702.5 gi|55378745|ref|YP_136595.1| - 0.016 15.3 0.7 0.019 15.1 0.5 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family C1_1 PF00130.17 gi|55378745|ref|YP_136595.1| - 0.029 14.0 0.3 0.042 13.5 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PhoU PF01895.14 gi|55378745|ref|YP_136595.1| - 0.048 14.1 0.1 0.068 13.6 0.1 1.2 1 0 0 1 1 1 0 PhoU domain IncA PF04156.9 gi|55378745|ref|YP_136595.1| - 0.19 11.3 5.0 0.24 10.9 3.4 1.1 1 0 0 1 1 1 0 IncA protein Presenilin PF01080.12 gi|55378745|ref|YP_136595.1| - 0.2 10.4 1.5 0.22 10.2 1.0 1.0 1 0 0 1 1 1 0 Presenilin zinc_ribbon_5 PF13719.1 gi|55378745|ref|YP_136595.1| - 0.3 10.6 0.3 0.3 10.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|55378745|ref|YP_136595.1| - 0.62 10.0 4.3 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SlyX PF04102.7 gi|55378745|ref|YP_136595.1| - 0.87 10.0 4.7 0.36 11.2 1.5 1.6 1 1 1 2 2 2 0 SlyX zinc_ribbon_4 PF13717.1 gi|55378745|ref|YP_136595.1| - 0.99 9.1 4.8 0.42 10.3 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Pox_RNA_Pol_19 PF05320.7 gi|55378745|ref|YP_136595.1| - 1.5 8.5 4.4 2 8.1 3.1 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit zf-C2H2 PF00096.21 gi|55378745|ref|YP_136595.1| - 2.9 8.4 6.0 2.7 8.5 0.3 2.5 3 0 0 3 3 2 0 Zinc finger, C2H2 type GLTSCR1 PF15249.1 gi|55378745|ref|YP_136595.1| - 3.7 7.6 6.9 6.3 6.9 4.8 1.4 1 1 0 1 1 1 0 Glioma tumor suppressor candidate region 4HBT_2 PF13279.1 gi|55378746|ref|YP_136596.1| - 2.9e-20 72.9 0.0 3.5e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|55378746|ref|YP_136596.1| - 1.1e-15 57.5 0.1 2.4e-15 56.4 0.1 1.6 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|55378746|ref|YP_136596.1| - 2.6e-09 36.4 0.3 1.4e-05 24.2 0.1 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase Lipase3_N PF03893.11 gi|55378746|ref|YP_136596.1| - 0.038 13.7 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 Lipase 3 N-terminal region UPF0118 PF01594.11 gi|55378747|ref|YP_136597.1| - 4.7e-22 78.3 39.9 1.4e-21 76.8 27.6 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF20 RIO1 PF01163.17 gi|55378749|ref|YP_136599.1| - 1.2e-49 168.2 1.0 1.8e-49 167.7 0.7 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|55378749|ref|YP_136599.1| - 7.4e-29 99.6 0.0 1.5e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|55378749|ref|YP_136599.1| - 6.3e-06 26.0 0.3 0.012 15.3 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|55378749|ref|YP_136599.1| - 0.00025 20.2 0.0 0.00038 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Sulfolobus_pRN PF05584.6 gi|55378749|ref|YP_136599.1| - 0.021 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2513 PF10711.4 gi|55378749|ref|YP_136599.1| - 0.093 12.8 0.2 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Fe_dep_repress PF01325.14 gi|55378750|ref|YP_136600.1| - 3.8e-14 52.3 0.0 6.3e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|55378750|ref|YP_136600.1| - 2.3e-07 30.3 0.0 5.1e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|55378750|ref|YP_136600.1| - 0.00037 20.1 0.0 0.00066 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55378750|ref|YP_136600.1| - 0.00045 20.4 0.0 0.00085 19.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|55378750|ref|YP_136600.1| - 0.0046 16.3 0.0 0.0073 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|55378750|ref|YP_136600.1| - 0.0099 15.9 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|55378750|ref|YP_136600.1| - 0.014 14.9 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|55378750|ref|YP_136600.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain Fe_dep_repr_C PF02742.10 gi|55378750|ref|YP_136600.1| - 0.032 13.9 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain NifU PF01106.12 gi|55378751|ref|YP_136601.1| - 5.2e-12 45.3 0.1 6.8e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain SBP_bac_5 PF00496.17 gi|55378752|ref|YP_136602.1| - 1e-46 159.4 6.0 1.3e-46 159.0 4.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|55378752|ref|YP_136602.1| - 0.0073 16.2 3.0 0.0073 16.2 2.1 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|55378753|ref|YP_136603.1| - 2.1e-39 134.9 12.7 2.1e-39 134.9 8.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55378754|ref|YP_136604.1| - 4.9e-31 107.6 7.1 4.9e-31 107.6 4.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|55378754|ref|YP_136604.1| - 9.3e-08 31.3 0.0 9.3e-08 31.3 0.0 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|55378755|ref|YP_136605.1| - 2.3e-27 95.9 0.0 3.2e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|55378755|ref|YP_136605.1| - 1.7e-19 69.8 0.1 3.2e-19 69.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|55378755|ref|YP_136605.1| - 4.7e-05 23.5 0.0 0.00013 22.0 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55378755|ref|YP_136605.1| - 0.016 15.3 0.7 0.73 9.9 0.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|55378755|ref|YP_136605.1| - 0.021 14.2 0.2 0.4 10.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|55378755|ref|YP_136605.1| - 0.032 14.2 0.0 0.061 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|55378755|ref|YP_136605.1| - 0.14 11.5 0.3 0.73 9.2 0.1 1.9 1 1 1 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|55378756|ref|YP_136606.1| - 1.2e-34 119.5 0.0 2.1e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|55378756|ref|YP_136606.1| - 4.8e-17 62.0 0.1 1e-16 61.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|55378756|ref|YP_136606.1| - 5.1e-06 26.6 0.0 0.014 15.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55378756|ref|YP_136606.1| - 3e-05 23.3 0.0 5e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55378756|ref|YP_136606.1| - 3.1e-05 24.0 4.5 5.3e-05 23.2 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55378756|ref|YP_136606.1| - 0.00014 21.9 0.1 0.0005 20.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55378756|ref|YP_136606.1| - 0.001 18.5 0.0 0.0024 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|55378756|ref|YP_136606.1| - 0.0045 16.6 0.1 0.0082 15.8 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|55378756|ref|YP_136606.1| - 0.0045 17.1 0.0 0.03 14.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|55378756|ref|YP_136606.1| - 0.0061 16.0 0.0 0.015 14.7 0.1 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|55378756|ref|YP_136606.1| - 0.0075 15.9 0.1 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|55378756|ref|YP_136606.1| - 0.025 14.0 0.0 0.42 9.9 0.0 2.5 2 1 1 3 3 3 0 AAA-like domain DUF258 PF03193.11 gi|55378756|ref|YP_136606.1| - 0.031 13.4 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|55378756|ref|YP_136606.1| - 0.031 14.5 0.0 0.07 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|55378756|ref|YP_136606.1| - 0.042 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|55378756|ref|YP_136606.1| - 0.052 12.4 0.0 0.09 11.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|55378756|ref|YP_136606.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|55378756|ref|YP_136606.1| - 0.056 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|55378756|ref|YP_136606.1| - 0.06 12.8 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PduV-EutP PF10662.4 gi|55378756|ref|YP_136606.1| - 0.064 12.7 0.1 0.17 11.3 0.1 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|55378756|ref|YP_136606.1| - 0.088 12.5 0.1 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|55378756|ref|YP_136606.1| - 0.091 12.6 0.0 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|55378756|ref|YP_136606.1| - 0.11 12.4 0.0 0.51 10.3 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|55378756|ref|YP_136606.1| - 0.12 13.1 0.0 0.31 11.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain DNase_II PF03265.10 gi|55378756|ref|YP_136606.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Deoxyribonuclease II PAS_4 PF08448.5 gi|55378757|ref|YP_136607.1| - 2.4e-37 127.3 3.3 1.9e-13 50.3 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|55378757|ref|YP_136607.1| - 4.4e-35 119.8 0.6 1.9e-11 43.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|55378757|ref|YP_136607.1| - 1.9e-33 114.9 0.1 1.6e-12 47.7 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|55378757|ref|YP_136607.1| - 4.7e-24 84.3 0.1 5.6e-17 61.6 0.0 4.9 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|55378757|ref|YP_136607.1| - 1.1e-22 80.1 0.0 7.7e-22 77.4 0.0 2.4 3 0 0 3 3 3 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55378757|ref|YP_136607.1| - 3.5e-16 58.8 1.3 3.5e-15 55.6 0.5 2.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55378757|ref|YP_136607.1| - 1.2e-14 53.5 0.2 6.4e-05 22.6 0.0 3.9 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|55378757|ref|YP_136607.1| - 1.4e-11 44.2 0.9 1.4e-11 44.2 0.6 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|55378757|ref|YP_136607.1| - 1.7e-10 40.9 1.1 6.1e-05 23.0 0.0 4.7 5 0 0 5 5 5 3 PAS fold PAS_10 PF13596.1 gi|55378757|ref|YP_136607.1| - 1.4e-05 25.3 0.0 0.045 14.0 0.0 3.8 3 1 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|55378757|ref|YP_136607.1| - 0.011 15.3 0.0 0.03 13.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|55378757|ref|YP_136607.1| - 0.021 14.5 0.0 6.5 6.5 0.0 2.8 3 1 0 3 3 2 0 GHKL domain OKR_DC_1_N PF03709.10 gi|55378757|ref|YP_136607.1| - 0.033 14.2 0.2 0.29 11.1 0.0 2.4 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Methyltransf_24 PF13578.1 gi|55378757|ref|YP_136607.1| - 0.037 14.8 0.7 0.27 12.1 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain ThiG PF05690.9 gi|55378757|ref|YP_136607.1| - 0.16 11.0 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ABC_transp_aux PF09822.4 gi|55378759|ref|YP_136609.1| - 1e-05 25.1 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|55378759|ref|YP_136609.1| - 0.00057 20.0 0.3 0.0025 17.9 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|55378759|ref|YP_136609.1| - 0.0057 16.3 0.0 0.0084 15.8 0.0 1.2 1 0 0 1 1 1 1 Trehalose utilisation Peptidase_S49 PF01343.13 gi|55378760|ref|YP_136610.1| - 7.1e-21 74.5 1.3 5.5e-20 71.6 0.9 2.1 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|55378760|ref|YP_136610.1| - 0.0008 19.1 0.1 0.0047 16.6 0.0 2.0 2 0 0 2 2 2 1 Clp protease OKR_DC_1_N PF03709.10 gi|55378760|ref|YP_136610.1| - 0.0018 18.3 0.0 0.011 15.8 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain ECH PF00378.15 gi|55378760|ref|YP_136610.1| - 0.043 12.9 0.3 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|55378760|ref|YP_136610.1| - 0.069 11.9 0.0 0.098 11.4 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Aldo_ket_red PF00248.16 gi|55378761|ref|YP_136611.1| - 5.1e-27 94.4 0.0 6.2e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.7 gi|55378762|ref|YP_136612.1| - 3.7e-11 43.3 0.0 6.1e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378762|ref|YP_136612.1| - 3.5e-07 30.7 0.3 6.6e-07 29.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378762|ref|YP_136612.1| - 1.6e-06 28.3 0.0 2.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55378762|ref|YP_136612.1| - 2.3e-05 24.3 6.2 7.1e-05 22.8 4.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55378762|ref|YP_136612.1| - 2.9e-05 24.4 0.0 4.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|55378762|ref|YP_136612.1| - 0.00056 19.0 0.0 0.00076 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|55378762|ref|YP_136612.1| - 0.0013 19.5 0.3 0.0041 17.9 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|55378762|ref|YP_136612.1| - 0.0046 16.2 0.0 0.0066 15.7 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Cupin_2 PF07883.6 gi|55378763|ref|YP_136613.1| - 5.3e-08 32.2 5.8 7.1e-08 31.8 1.9 2.0 1 1 1 2 2 2 1 Cupin domain Cupin_6 PF12852.2 gi|55378763|ref|YP_136613.1| - 0.013 15.1 0.4 0.014 14.9 0.3 1.1 1 0 0 1 1 1 0 Cupin AraC_binding PF02311.14 gi|55378763|ref|YP_136613.1| - 0.049 13.3 0.1 0.061 13.0 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|55378763|ref|YP_136613.1| - 0.05 12.9 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF1637 PF07847.7 gi|55378763|ref|YP_136613.1| - 0.06 12.7 0.0 0.064 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Pirin PF02678.11 gi|55378763|ref|YP_136613.1| - 0.066 13.0 0.7 0.11 12.3 0.5 1.4 1 1 0 1 1 1 0 Pirin CENP-C_C PF11699.3 gi|55378763|ref|YP_136613.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like TFIIB PF00382.14 gi|55378764|ref|YP_136614.1| - 8e-29 99.2 0.2 3.6e-15 55.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55378764|ref|YP_136614.1| - 5.6e-17 60.7 2.4 1.2e-16 59.7 1.6 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|55378764|ref|YP_136614.1| - 0.00053 19.5 0.8 0.001 18.7 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|55378764|ref|YP_136614.1| - 0.0059 16.5 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Rubredoxin PF00301.15 gi|55378764|ref|YP_136614.1| - 0.015 15.1 0.8 3.6 7.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|55378764|ref|YP_136614.1| - 0.018 14.2 1.2 0.033 13.4 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Sigma70_r4 PF04545.11 gi|55378764|ref|YP_136614.1| - 0.044 13.0 4.0 0.097 11.9 0.2 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 DZR PF12773.2 gi|55378764|ref|YP_136614.1| - 0.048 13.4 0.5 0.084 12.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Trp_repressor PF01371.14 gi|55378764|ref|YP_136614.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein zf-C4_Topoisom PF01396.14 gi|55378764|ref|YP_136614.1| - 0.44 10.0 1.6 0.52 9.8 0.0 1.8 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|55378764|ref|YP_136614.1| - 0.6 9.9 3.5 0.37 10.5 0.8 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prim_Zn_Ribbon PF08273.7 gi|55378764|ref|YP_136614.1| - 0.9 9.6 4.8 2.5 8.2 3.4 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase HTH_10 PF04967.7 gi|55378765|ref|YP_136615.1| - 1.9e-14 52.9 0.0 3e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|55378765|ref|YP_136615.1| - 2.2e-05 23.7 0.1 0.00043 19.6 0.1 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|55378765|ref|YP_136615.1| - 0.00014 21.4 0.1 0.00032 20.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.1 gi|55378765|ref|YP_136615.1| - 0.00017 21.1 0.0 0.00032 20.2 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|55378765|ref|YP_136615.1| - 0.0013 18.0 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_8 PF02954.14 gi|55378765|ref|YP_136615.1| - 0.0021 17.5 0.1 0.0045 16.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.1 gi|55378765|ref|YP_136615.1| - 0.0037 16.7 0.1 0.0068 15.9 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|55378765|ref|YP_136615.1| - 0.0042 16.7 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|55378765|ref|YP_136615.1| - 0.0099 15.6 0.1 0.032 14.0 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55378765|ref|YP_136615.1| - 0.019 14.2 0.1 0.053 12.8 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_psq PF05225.11 gi|55378765|ref|YP_136615.1| - 0.021 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_3 PF01381.17 gi|55378765|ref|YP_136615.1| - 0.035 13.9 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix TetR_N PF00440.18 gi|55378765|ref|YP_136615.1| - 0.052 13.1 0.2 0.18 11.4 0.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.1 gi|55378765|ref|YP_136615.1| - 0.056 13.4 0.0 0.15 12.0 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55378765|ref|YP_136615.1| - 0.069 12.7 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_ECF PF07638.6 gi|55378765|ref|YP_136615.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor Peptidase_A2E PF12382.3 gi|55378766|ref|YP_136616.1| - 0.091 12.5 0.1 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Retrotransposon peptidase DUF677 PF05055.7 gi|55378766|ref|YP_136616.1| - 0.16 10.5 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) CBM_2 PF00553.14 gi|55378767|ref|YP_136617.1| - 0.00068 19.6 2.1 0.067 13.2 0.3 2.4 2 0 0 2 2 2 2 Cellulose binding domain 2-Hacid_dh_C PF02826.14 gi|55378768|ref|YP_136618.1| - 3.9e-56 189.0 0.0 5.4e-56 188.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|55378768|ref|YP_136618.1| - 1.3e-31 108.8 1.0 1.5e-31 108.6 0.7 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ThiS PF02597.15 gi|55378769|ref|YP_136619.1| - 1.1e-16 60.9 0.0 1.3e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|55378769|ref|YP_136619.1| - 0.0086 15.6 0.1 1.1 8.9 0.0 2.1 2 0 0 2 2 2 2 TrkA-C domain ThiS PF02597.15 gi|55378770|ref|YP_136620.1| - 1e-05 25.8 0.0 0.0001 22.6 0.0 2.1 1 1 0 1 1 1 1 ThiS family DUF1889 PF08986.5 gi|55378770|ref|YP_136620.1| - 0.11 12.6 0.0 4.8 7.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1889) PilJ PF13675.1 gi|55378771|ref|YP_136621.1| - 0.017 15.3 0.3 0.024 14.9 0.2 1.4 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Lipoprotein_18 PF06804.6 gi|55378773|ref|YP_136623.1| - 0.13 10.9 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 NlpB/DapX lipoprotein AFOR_C PF01314.13 gi|55378775|ref|YP_136625.1| - 1.7e-127 425.2 3.0 2.1e-127 424.9 2.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|55378775|ref|YP_136625.1| - 7e-77 257.3 0.1 1.1e-76 256.7 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ribosomal_L15e PF00827.12 gi|55378776|ref|YP_136626.1| - 8.2e-81 270.1 7.0 9.8e-81 269.8 4.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 BCD PF15461.1 gi|55378777|ref|YP_136627.1| - 2.3e-82 276.3 17.5 3.3e-82 275.8 12.2 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase SQS_PSY PF00494.14 gi|55378779|ref|YP_136629.1| - 1.1e-64 218.2 8.5 1.4e-64 217.9 5.9 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase HTH_10 PF04967.7 gi|55378780|ref|YP_136630.1| - 1.5e-16 59.6 0.0 3.1e-16 58.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|55378780|ref|YP_136630.1| - 5.3e-14 52.9 1.2 2.2e-13 50.9 0.5 2.3 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|55378780|ref|YP_136630.1| - 6.2e-12 45.5 0.1 1.9e-11 43.9 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|55378780|ref|YP_136630.1| - 3.7e-08 33.5 0.9 3.2e-07 30.5 0.2 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|55378780|ref|YP_136630.1| - 4.7e-07 30.0 2.8 5.6e-07 29.7 0.6 2.0 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|55378780|ref|YP_136630.1| - 1.4e-06 28.6 0.0 3.5e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|55378780|ref|YP_136630.1| - 0.0025 17.6 0.0 0.0065 16.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|55378780|ref|YP_136630.1| - 0.0026 17.5 0.0 0.0077 16.0 0.0 1.8 1 0 0 1 1 1 1 PAS fold FleQ PF06490.6 gi|55378780|ref|YP_136630.1| - 0.04 14.0 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Flagellar regulatory protein FleQ PAS_7 PF12860.2 gi|55378780|ref|YP_136630.1| - 0.078 12.9 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 PAS fold zf-dskA_traR PF01258.12 gi|55378781|ref|YP_136631.1| - 0.043 13.5 1.7 0.5 10.1 0.2 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2116 PF09889.4 gi|55378781|ref|YP_136631.1| - 0.063 13.0 0.4 0.094 12.5 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3639 PF12341.3 gi|55378781|ref|YP_136631.1| - 0.22 11.5 1.0 0.34 10.9 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3639) DZR PF12773.2 gi|55378781|ref|YP_136631.1| - 0.52 10.1 3.6 1.5 8.6 2.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon RNB PF00773.14 gi|55378782|ref|YP_136632.1| - 1.5e-76 257.7 0.0 2.3e-74 250.6 0.0 2.1 1 1 0 1 1 1 1 RNB domain ABC_tran PF00005.22 gi|55378783|ref|YP_136633.1| - 3.7e-29 101.7 0.0 4.9e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378783|ref|YP_136633.1| - 3.2e-15 56.8 0.0 1.4e-10 41.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|55378783|ref|YP_136633.1| - 0.011 14.8 0.0 0.44 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|55378783|ref|YP_136633.1| - 0.02 15.2 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|55378783|ref|YP_136633.1| - 0.032 14.1 0.0 0.088 12.7 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|55378783|ref|YP_136633.1| - 0.055 13.6 0.0 0.22 11.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|55378783|ref|YP_136633.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|55378783|ref|YP_136633.1| - 0.11 11.9 1.0 0.28 10.7 0.1 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Phe_tRNA-synt_N PF02912.13 gi|55378785|ref|YP_136635.1| - 0.13 12.0 0.0 4.6 7.0 0.0 2.4 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain Lactamase_B PF00753.22 gi|55378786|ref|YP_136636.1| - 2.4e-18 66.4 6.6 3.6e-18 65.9 4.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|55378786|ref|YP_136636.1| - 4.4e-06 27.0 0.0 7.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|55378786|ref|YP_136636.1| - 0.1 12.3 0.1 0.35 10.5 0.0 1.9 3 0 0 3 3 3 0 Beta-lactamase superfamily domain HTH_20 PF12840.2 gi|55378787|ref|YP_136637.1| - 0.013 15.2 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|55378787|ref|YP_136637.1| - 0.15 11.6 0.1 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF1180 PF06679.7 gi|55378788|ref|YP_136638.1| - 0.0026 17.6 1.4 0.0038 17.1 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1180) C2 PF00168.25 gi|55378788|ref|YP_136638.1| - 0.074 12.9 0.8 0.12 12.1 0.1 1.7 2 0 0 2 2 2 0 C2 domain PKD PF00801.15 gi|55378789|ref|YP_136639.1| - 3.4e-07 29.8 9.2 0.0017 18.0 0.7 3.0 2 0 0 2 2 2 2 PKD domain ChitinaseA_N PF08329.5 gi|55378789|ref|YP_136639.1| - 0.0011 18.7 7.2 0.2 11.4 0.1 2.9 3 0 0 3 3 3 2 Chitinase A, N-terminal domain He_PIG PF05345.7 gi|55378789|ref|YP_136639.1| - 0.0093 15.9 7.3 0.22 11.5 0.8 3.3 2 1 0 2 2 2 2 Putative Ig domain REJ PF02010.10 gi|55378789|ref|YP_136639.1| - 0.038 12.3 1.6 0.14 10.3 1.1 1.9 1 1 0 1 1 1 0 REJ domain Y_Y_Y PF07495.8 gi|55378789|ref|YP_136639.1| - 0.041 13.6 0.0 0.24 11.1 0.0 2.3 2 0 0 2 2 2 0 Y_Y_Y domain HypA PF01155.14 gi|55378790|ref|YP_136640.1| - 0.00026 20.6 2.6 0.0054 16.4 0.2 2.2 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|55378790|ref|YP_136640.1| - 0.0025 17.6 4.7 0.014 15.3 1.0 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|55378790|ref|YP_136640.1| - 0.0086 15.8 1.8 0.24 11.2 0.2 2.5 2 0 0 2 2 2 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|55378790|ref|YP_136640.1| - 0.02 14.2 5.7 1.1 8.6 0.1 3.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|55378790|ref|YP_136640.1| - 0.021 14.0 8.4 0.14 11.3 3.2 2.8 2 1 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|55378790|ref|YP_136640.1| - 0.021 14.6 1.1 0.15 11.8 0.2 2.2 2 0 0 2 2 2 0 RNHCP domain zf-ISL3 PF14690.1 gi|55378790|ref|YP_136640.1| - 0.082 12.9 1.8 35 4.5 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ZPR1 PF03367.8 gi|55378790|ref|YP_136640.1| - 0.088 11.9 1.9 0.99 8.5 0.5 2.4 2 1 0 2 2 2 0 ZPR1 zinc-finger domain Elf1 PF05129.8 gi|55378790|ref|YP_136640.1| - 0.11 12.2 0.5 12 5.6 0.1 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|55378790|ref|YP_136640.1| - 0.12 11.9 2.9 7.6 6.2 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|55378790|ref|YP_136640.1| - 0.15 11.7 2.9 11 5.7 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DUF1660 PF07874.6 gi|55378790|ref|YP_136640.1| - 0.19 12.0 0.5 1.1 9.5 0.3 2.1 1 1 0 1 1 1 0 Prophage protein (DUF1660) zf-FPG_IleRS PF06827.9 gi|55378790|ref|YP_136640.1| - 0.22 11.1 6.4 1.8 8.3 0.3 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|55378790|ref|YP_136640.1| - 0.51 9.8 6.6 5.6 6.5 0.3 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|55378790|ref|YP_136640.1| - 0.55 9.9 3.6 1.3 8.7 0.1 2.7 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.14 gi|55378790|ref|YP_136640.1| - 1.3 8.5 5.2 50 3.5 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.11 gi|55378790|ref|YP_136640.1| - 1.6 8.4 4.5 61 3.4 0.2 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-RING_3 PF14369.1 gi|55378790|ref|YP_136640.1| - 2.3 8.2 7.7 21 5.2 0.3 3.5 2 1 1 3 3 3 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|55378790|ref|YP_136640.1| - 3.5 7.4 7.4 39 4.1 2.8 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55378790|ref|YP_136640.1| - 6.9 6.3 11.8 23 4.6 0.9 3.2 2 1 1 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|55378790|ref|YP_136640.1| - 9 6.2 6.1 1e+02 2.8 0.0 2.9 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF1743 PF08489.6 gi|55378791|ref|YP_136641.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1743) ABC2_membrane PF01061.19 gi|55378792|ref|YP_136642.1| - 2.9e-24 85.3 20.9 3.6e-24 85.0 14.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|55378792|ref|YP_136642.1| - 1.1e-05 24.7 18.6 1.1e-05 24.7 12.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|55378793|ref|YP_136643.1| - 6.2e-32 110.7 0.0 9.7e-32 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378793|ref|YP_136643.1| - 8.9e-15 55.4 0.0 7.2e-09 36.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|55378793|ref|YP_136643.1| - 6.7e-05 23.3 0.0 0.00014 22.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|55378793|ref|YP_136643.1| - 0.00094 18.6 0.0 0.0019 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|55378793|ref|YP_136643.1| - 0.0034 16.8 0.0 0.009 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|55378793|ref|YP_136643.1| - 0.0066 15.8 0.2 2.9 7.2 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF258 PF03193.11 gi|55378793|ref|YP_136643.1| - 0.008 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|55378793|ref|YP_136643.1| - 0.01 16.1 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|55378793|ref|YP_136643.1| - 0.013 14.9 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|55378793|ref|YP_136643.1| - 0.023 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|55378793|ref|YP_136643.1| - 0.03 13.9 0.1 0.12 11.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|55378793|ref|YP_136643.1| - 0.031 13.9 0.0 0.23 11.1 0.0 2.2 2 1 0 2 2 2 0 NTPase AAA_15 PF13175.1 gi|55378793|ref|YP_136643.1| - 0.035 13.1 0.0 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.6 gi|55378793|ref|YP_136643.1| - 0.035 12.7 0.0 0.051 12.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.1 gi|55378793|ref|YP_136643.1| - 0.042 13.7 0.1 0.093 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|55378793|ref|YP_136643.1| - 0.053 13.5 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|55378793|ref|YP_136643.1| - 0.054 12.7 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|55378793|ref|YP_136643.1| - 0.056 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IIGP PF05049.8 gi|55378793|ref|YP_136643.1| - 0.074 11.8 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) ATP_bind_1 PF03029.12 gi|55378793|ref|YP_136643.1| - 0.09 12.2 0.0 0.44 10.0 0.0 2.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|55378793|ref|YP_136643.1| - 0.11 12.5 0.0 0.26 11.2 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|55378793|ref|YP_136643.1| - 0.15 11.9 0.0 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|55378793|ref|YP_136643.1| - 0.15 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|55378793|ref|YP_136643.1| - 0.15 12.1 0.3 1 9.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain DUF552 PF04472.7 gi|55378795|ref|YP_136644.1| - 1.2e-16 60.3 2.3 2.1e-16 59.5 1.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Pribosyltran_N PF13793.1 gi|55378795|ref|YP_136644.1| - 0.11 12.1 0.1 0.18 11.5 0.1 1.3 1 1 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase PUA PF01472.15 gi|55378796|ref|YP_136646.1| - 5.2e-18 64.5 1.0 8.8e-18 63.8 0.7 1.4 1 0 0 1 1 1 1 PUA domain Kri1 PF05178.7 gi|55378796|ref|YP_136646.1| - 0.18 12.1 0.8 0.21 11.8 0.1 1.4 2 0 0 2 2 2 0 KRI1-like family UL11 PF11094.3 gi|55378796|ref|YP_136646.1| - 0.19 11.5 1.7 0.36 10.6 0.5 1.9 2 0 0 2 2 2 0 Membrane-associated tegument protein Peripla_BP_2 PF01497.13 gi|55378797|ref|YP_136647.1| - 1.3e-39 135.7 0.1 1.7e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF3094 PF11293.3 gi|55378798|ref|YP_136648.1| - 4.6 6.7 9.8 0.5 9.8 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3094) ThiF PF00899.16 gi|55378799|ref|YP_136649.1| - 4.3e-44 149.6 0.2 6.8e-44 148.9 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|55378799|ref|YP_136649.1| - 4.6e-32 109.4 0.1 7.8e-32 108.7 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|55378799|ref|YP_136649.1| - 0.0051 15.8 0.2 0.0085 15.1 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|55378799|ref|YP_136649.1| - 0.011 15.8 0.2 0.024 14.7 0.1 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|55378799|ref|YP_136649.1| - 0.063 13.5 0.3 0.19 11.9 0.2 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding MCPsignal PF00015.16 gi|55378800|ref|YP_136650.1| - 1.2e-52 178.5 50.8 3.7e-50 170.4 23.5 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|55378800|ref|YP_136650.1| - 1.7e-06 27.8 33.0 0.002 17.9 2.2 4.2 2 2 2 4 4 4 4 Laminin Domain II Syntaxin_2 PF14523.1 gi|55378800|ref|YP_136650.1| - 0.00014 21.8 12.2 0.19 11.7 0.3 4.0 2 2 1 3 3 3 2 Syntaxin-like protein DUF948 PF06103.6 gi|55378800|ref|YP_136650.1| - 0.00074 19.3 30.9 0.21 11.4 0.2 4.8 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|55378800|ref|YP_136650.1| - 0.0027 16.4 23.6 0.047 12.3 6.5 2.2 1 1 0 2 2 2 2 Spc7 kinetochore protein CorA PF01544.13 gi|55378800|ref|YP_136650.1| - 0.0049 15.9 16.5 0.031 13.3 4.0 2.4 2 1 0 2 2 2 2 CorA-like Mg2+ transporter protein WXG100 PF06013.7 gi|55378800|ref|YP_136650.1| - 0.018 15.0 29.7 2.3 8.2 1.6 6.5 1 1 3 6 6 6 0 Proteins of 100 residues with WXG COG5 PF10392.4 gi|55378800|ref|YP_136650.1| - 0.029 14.3 12.2 0.031 14.2 1.8 3.4 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Sec5 PF15469.1 gi|55378800|ref|YP_136650.1| - 0.032 13.9 8.1 0.038 13.7 4.0 2.4 1 1 1 2 2 2 0 Exocyst complex component Sec5 Lebercilin PF15619.1 gi|55378800|ref|YP_136650.1| - 0.033 13.6 3.8 2.4 7.5 0.6 2.4 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DASH_Duo1 PF08651.5 gi|55378800|ref|YP_136650.1| - 0.034 13.6 1.5 0.034 13.6 1.0 4.6 3 2 2 5 5 4 0 DASH complex subunit Duo1 IncA PF04156.9 gi|55378800|ref|YP_136650.1| - 0.035 13.6 22.9 69 2.9 0.2 3.5 1 1 1 2 2 2 0 IncA protein Myosin_tail_1 PF01576.14 gi|55378800|ref|YP_136650.1| - 0.043 11.5 29.6 0.14 9.8 20.5 1.6 1 1 0 1 1 1 0 Myosin tail TPR_MLP1_2 PF07926.7 gi|55378800|ref|YP_136650.1| - 0.075 12.7 24.3 0.92 9.2 5.9 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|55378800|ref|YP_136650.1| - 0.092 12.8 30.4 0.7 10.0 2.0 4.6 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Gene66 PF02053.10 gi|55378800|ref|YP_136650.1| - 0.11 11.9 0.3 0.28 10.5 0.1 1.8 2 1 0 2 2 1 0 Gene 66 (IR5) protein Reo_sigmaC PF04582.7 gi|55378800|ref|YP_136650.1| - 0.11 11.6 28.2 1.6 7.7 7.3 2.9 1 1 2 3 3 3 0 Reovirus sigma C capsid protein GAS PF13851.1 gi|55378800|ref|YP_136650.1| - 0.13 11.4 14.5 1.6 7.8 3.5 2.8 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Syntaxin-6_N PF09177.6 gi|55378800|ref|YP_136650.1| - 0.15 12.4 27.4 2.8 8.3 3.4 4.5 2 2 2 4 4 4 0 Syntaxin 6, N-terminal HisK_N PF09385.5 gi|55378800|ref|YP_136650.1| - 0.16 11.5 5.1 0.33 10.5 0.6 2.7 2 1 0 2 2 2 0 Histidine kinase N terminal Mnd1 PF03962.10 gi|55378800|ref|YP_136650.1| - 0.22 11.1 24.6 0.084 12.5 5.1 2.5 1 1 0 2 2 2 0 Mnd1 family Seryl_tRNA_N PF02403.17 gi|55378800|ref|YP_136650.1| - 0.39 10.7 25.0 0.2 11.6 1.9 3.9 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|55378800|ref|YP_136650.1| - 0.49 10.6 34.2 2 8.7 3.4 5.4 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein Flu_NS2 PF00601.14 gi|55378800|ref|YP_136650.1| - 0.52 10.5 7.8 2.3 8.5 0.3 3.7 1 1 2 4 4 4 0 Influenza non-structural protein (NS2) Vps51 PF08700.6 gi|55378800|ref|YP_136650.1| - 0.63 9.9 15.7 0.21 11.4 0.6 4.7 4 1 2 6 6 5 0 Vps51/Vps67 DUF1664 PF07889.7 gi|55378800|ref|YP_136650.1| - 0.64 9.8 28.2 0.048 13.4 3.9 4.4 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) DUF972 PF06156.8 gi|55378800|ref|YP_136650.1| - 0.69 10.2 17.5 0.33 11.2 1.0 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|55378800|ref|YP_136650.1| - 0.98 7.1 17.9 3 5.6 12.3 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family EspB PF05802.6 gi|55378800|ref|YP_136650.1| - 1.3 7.8 36.3 2.1 7.2 12.9 2.7 1 1 1 2 2 2 0 Enterobacterial EspB protein Cauli_AT PF03233.8 gi|55378800|ref|YP_136650.1| - 1.4 8.5 19.2 0.61 9.7 1.7 3.5 2 1 2 4 4 3 0 Aphid transmission protein DUF745 PF05335.8 gi|55378800|ref|YP_136650.1| - 1.7 8.1 35.0 0.36 10.3 1.0 3.7 1 1 3 4 4 4 0 Protein of unknown function (DUF745) Mod_r PF07200.8 gi|55378800|ref|YP_136650.1| - 1.7 8.5 15.8 1.6 8.6 2.4 3.0 2 2 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Syntaxin PF00804.20 gi|55378800|ref|YP_136650.1| - 1.7 8.8 35.4 1.2 9.3 6.9 4.2 1 1 3 4 4 4 0 Syntaxin Fib_alpha PF08702.5 gi|55378800|ref|YP_136650.1| - 1.7 8.7 22.6 2.6 8.1 4.4 3.9 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family Laminin_I PF06008.9 gi|55378800|ref|YP_136650.1| - 2.3 7.4 28.2 0.1 11.8 6.3 3.5 1 1 1 2 2 2 0 Laminin Domain I COG2 PF06148.6 gi|55378800|ref|YP_136650.1| - 2.3 8.0 20.3 4.8 7.0 0.8 4.4 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF489 PF04356.7 gi|55378800|ref|YP_136650.1| - 2.6 7.5 9.4 1.4 8.4 1.5 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF489) DUF2408 PF10303.4 gi|55378800|ref|YP_136650.1| - 2.7 8.0 15.1 8.4 6.5 2.4 3.9 1 1 2 3 3 2 0 Protein of unknown function (DUF2408) TMPIT PF07851.8 gi|55378800|ref|YP_136650.1| - 3.1 6.7 15.3 1.4 7.9 2.5 2.9 2 1 1 3 3 3 0 TMPIT-like protein FlaC_arch PF05377.6 gi|55378800|ref|YP_136650.1| - 3.2 7.7 20.6 3.4 7.6 0.7 4.7 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) AATF-Che1 PF13339.1 gi|55378800|ref|YP_136650.1| - 3.6 7.7 15.2 4.1e+03 -2.2 10.5 3.3 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor DUF1759 PF03564.10 gi|55378800|ref|YP_136650.1| - 3.6 7.3 10.9 1.1 9.1 0.3 3.6 2 2 2 4 4 4 0 Protein of unknown function (DUF1759) FUSC PF04632.7 gi|55378800|ref|YP_136650.1| - 4.1 5.7 17.0 2e+02 0.1 11.8 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family Muted PF14942.1 gi|55378800|ref|YP_136650.1| - 4.3 7.2 18.3 1.4 8.7 4.1 2.9 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein Hemerythrin PF01814.18 gi|55378800|ref|YP_136650.1| - 4.6 7.3 9.9 36 4.5 1.5 3.8 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain APG6 PF04111.7 gi|55378800|ref|YP_136650.1| - 4.8 6.1 23.6 2.6 6.9 5.2 2.4 1 1 0 2 2 2 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|55378800|ref|YP_136650.1| - 5 5.9 12.6 5.8 5.7 0.8 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Sec20 PF03908.8 gi|55378800|ref|YP_136650.1| - 5.2 6.8 17.3 0.53 10.0 0.5 4.4 2 2 2 4 4 4 0 Sec20 BAR_2 PF10455.4 gi|55378800|ref|YP_136650.1| - 5.8 5.7 17.6 7.3 5.4 5.2 2.6 1 1 1 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking FH2 PF02181.18 gi|55378800|ref|YP_136650.1| - 6.5 5.5 13.0 3.9 6.2 1.6 2.7 1 1 2 3 3 3 0 Formin Homology 2 Domain Transposase_22 PF02994.9 gi|55378800|ref|YP_136650.1| - 6.8 5.0 22.4 5 5.5 5.4 2.1 1 1 1 2 2 2 0 L1 transposable element Hormone_1 PF00103.15 gi|55378800|ref|YP_136650.1| - 7.3 5.8 6.0 7.6 5.8 0.3 2.9 2 2 1 3 3 3 0 Somatotropin hormone family DASH_Dad4 PF08650.5 gi|55378800|ref|YP_136650.1| - 8.3 6.4 9.0 7.6 6.5 0.1 3.6 3 1 0 3 3 3 0 DASH complex subunit Dad4 APG17 PF04108.7 gi|55378800|ref|YP_136650.1| - 9.1 4.9 26.5 12 4.5 10.9 2.8 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF2203 PF09969.4 gi|55378800|ref|YP_136650.1| - 9.7 6.4 18.3 6.9 6.9 0.3 3.7 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) Peptidase_M32 PF02074.10 gi|55378801|ref|YP_136651.1| - 2.3e-146 488.3 0.9 2.8e-146 488.0 0.7 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase FmdA_AmdA PF03069.10 gi|55378802|ref|YP_136652.1| - 3.1e-23 82.0 1.7 2.1e-15 56.2 0.0 3.0 1 1 2 3 3 3 2 Acetamidase/Formamidase family ANTAR PF03861.9 gi|55378802|ref|YP_136652.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 ANTAR domain TAT_signal PF10518.4 gi|55378802|ref|YP_136652.1| - 0.026 14.4 4.0 0.06 13.3 2.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M20 PF01546.23 gi|55378803|ref|YP_136653.1| - 2.5e-27 95.6 3.2 3.1e-27 95.2 2.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|55378803|ref|YP_136653.1| - 3.3e-15 55.7 0.1 6.6e-15 54.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain UvdE PF03851.9 gi|55378804|ref|YP_136654.1| - 2.4e-54 184.2 0.0 2.8e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE T2SE PF00437.15 gi|55378805|ref|YP_136655.1| - 3.7e-12 45.7 0.0 6.3e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|55378805|ref|YP_136655.1| - 5.3e-06 25.9 0.3 2e-05 24.1 0.2 2.1 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.12 gi|55378805|ref|YP_136655.1| - 0.00019 20.8 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|55378805|ref|YP_136655.1| - 0.00032 21.4 0.1 0.0021 18.9 0.0 2.5 1 1 0 2 2 1 1 AAA domain PIN PF01850.16 gi|55378805|ref|YP_136655.1| - 0.00033 20.9 0.1 0.00081 19.7 0.0 1.7 1 0 0 1 1 1 1 PIN domain AAA_33 PF13671.1 gi|55378805|ref|YP_136655.1| - 0.0014 18.5 0.0 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55378805|ref|YP_136655.1| - 0.004 16.6 0.0 0.0096 15.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|55378805|ref|YP_136655.1| - 0.004 16.2 0.0 0.0074 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|55378805|ref|YP_136655.1| - 0.0085 15.4 0.0 0.02 14.2 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase AAA_16 PF13191.1 gi|55378805|ref|YP_136655.1| - 0.015 15.2 0.1 0.23 11.4 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|55378805|ref|YP_136655.1| - 0.02 14.6 0.0 0.064 13.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|55378805|ref|YP_136655.1| - 0.024 14.9 0.0 0.14 12.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|55378805|ref|YP_136655.1| - 0.028 13.9 0.0 0.077 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|55378805|ref|YP_136655.1| - 0.034 13.8 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 NTPase KaiC PF06745.8 gi|55378805|ref|YP_136655.1| - 0.046 12.8 0.0 0.13 11.4 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.1 gi|55378805|ref|YP_136655.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain KH_3 PF13014.1 gi|55378805|ref|YP_136655.1| - 0.075 12.7 0.4 0.28 10.8 0.3 2.0 1 0 0 1 1 1 0 KH domain KH_2 PF07650.12 gi|55378805|ref|YP_136655.1| - 0.077 12.5 0.5 0.21 11.1 0.3 1.7 1 0 0 1 1 1 0 KH domain AAA_25 PF13481.1 gi|55378805|ref|YP_136655.1| - 0.083 12.2 3.1 0.19 11.0 0.2 2.4 2 1 0 2 2 2 0 AAA domain PIN_4 PF13638.1 gi|55378805|ref|YP_136655.1| - 0.13 12.3 0.0 0.39 10.8 0.0 1.9 1 1 0 1 1 1 0 PIN domain KTI12 PF08433.5 gi|55378805|ref|YP_136655.1| - 0.19 10.8 0.0 0.37 9.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 YqcI_YcgG PF08892.6 gi|55378806|ref|YP_136656.1| - 1.2e-76 257.1 0.0 1.4e-76 256.8 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.15 gi|55378807|ref|YP_136657.1| - 8.1e-38 130.0 0.0 9.4e-38 129.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family TrmB PF01978.14 gi|55378808|ref|YP_136658.1| - 0.00074 19.1 0.1 0.00097 18.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|55378808|ref|YP_136658.1| - 0.02 14.5 0.1 0.039 13.6 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|55378808|ref|YP_136658.1| - 0.022 14.1 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|55378808|ref|YP_136658.1| - 0.041 13.3 0.1 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|55378808|ref|YP_136658.1| - 0.054 13.1 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|55378808|ref|YP_136658.1| - 0.055 13.1 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF4546 PF15079.1 gi|55378808|ref|YP_136658.1| - 0.099 11.7 0.0 0.11 11.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4546) DUF3040 PF11239.3 gi|55378809|ref|YP_136659.1| - 0.21 11.6 1.6 3.5 7.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) ABC_tran PF00005.22 gi|55378810|ref|YP_136660.1| - 2.6e-38 131.4 0.0 1.6e-20 73.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|55378810|ref|YP_136660.1| - 5.2e-14 52.8 0.1 0.016 15.2 0.0 4.3 3 1 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|55378810|ref|YP_136660.1| - 1.1e-12 47.6 3.7 0.0025 17.0 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|55378810|ref|YP_136660.1| - 2.3e-11 43.0 0.8 4.4e-11 42.1 0.6 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|55378810|ref|YP_136660.1| - 1e-09 39.2 0.1 7.9e-05 23.4 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|55378810|ref|YP_136660.1| - 1.8e-07 31.3 0.2 0.0045 17.1 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55378810|ref|YP_136660.1| - 1.3e-06 28.4 0.4 0.0097 15.9 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|55378810|ref|YP_136660.1| - 1.5e-06 28.4 0.0 0.053 13.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|55378810|ref|YP_136660.1| - 6.6e-06 26.2 0.0 0.14 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|55378810|ref|YP_136660.1| - 2.9e-05 24.3 0.0 0.57 10.5 0.0 3.4 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|55378810|ref|YP_136660.1| - 4.1e-05 22.8 0.0 0.087 12.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|55378810|ref|YP_136660.1| - 4.3e-05 23.9 0.1 0.32 11.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|55378810|ref|YP_136660.1| - 7.7e-05 22.4 0.0 0.22 11.1 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.1 gi|55378810|ref|YP_136660.1| - 0.00013 21.4 1.8 0.24 10.8 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_33 PF13671.1 gi|55378810|ref|YP_136660.1| - 0.00016 21.5 0.0 0.03 14.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|55378810|ref|YP_136660.1| - 0.00027 20.7 0.1 1.3 8.9 0.0 2.9 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|55378810|ref|YP_136660.1| - 0.00037 19.3 0.0 0.52 8.9 0.0 3.1 2 1 0 3 3 3 1 Rad17 cell cycle checkpoint protein Fer4 PF00037.22 gi|55378810|ref|YP_136660.1| - 0.00055 19.4 1.3 0.00055 19.4 0.9 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain MobB PF03205.9 gi|55378810|ref|YP_136660.1| - 0.0006 19.5 0.1 0.39 10.4 0.0 2.8 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|55378810|ref|YP_136660.1| - 0.0007 18.7 0.0 0.31 10.0 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Fer4_6 PF12837.2 gi|55378810|ref|YP_136660.1| - 0.00071 19.3 14.1 0.0022 17.7 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.1 gi|55378810|ref|YP_136660.1| - 0.00094 18.6 0.2 1.9 8.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|55378810|ref|YP_136660.1| - 0.0024 17.7 0.0 3.3 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|55378810|ref|YP_136660.1| - 0.006 16.1 0.1 2.7 7.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|55378810|ref|YP_136660.1| - 0.0061 16.0 0.0 1.5 8.2 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|55378810|ref|YP_136660.1| - 0.008 15.0 0.0 0.75 8.5 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.1 gi|55378810|ref|YP_136660.1| - 0.011 15.7 0.1 1.8 8.4 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|55378810|ref|YP_136660.1| - 0.011 15.2 1.9 0.72 9.2 0.1 2.6 2 2 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|55378810|ref|YP_136660.1| - 0.011 15.4 0.1 4.6 6.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|55378810|ref|YP_136660.1| - 0.019 14.6 0.5 9.1 5.9 0.0 3.0 3 0 0 3 3 3 0 NTPase Thymidylate_kin PF02223.12 gi|55378810|ref|YP_136660.1| - 0.025 13.9 0.0 8 5.7 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase AAA_19 PF13245.1 gi|55378810|ref|YP_136660.1| - 0.049 13.3 1.0 6.1 6.6 0.0 3.4 3 0 0 3 3 3 0 Part of AAA domain Miro PF08477.8 gi|55378810|ref|YP_136660.1| - 0.059 13.8 0.0 6.1 7.3 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein Fer4_2 PF12797.2 gi|55378810|ref|YP_136660.1| - 0.061 13.2 12.2 0.27 11.2 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.12 gi|55378810|ref|YP_136660.1| - 0.068 12.9 0.1 15 5.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|55378810|ref|YP_136660.1| - 0.087 11.5 0.5 3.4 6.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_7 PF12838.2 gi|55378810|ref|YP_136660.1| - 0.094 13.1 11.2 0.25 11.7 7.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|55378810|ref|YP_136660.1| - 0.22 9.9 0.0 5.7 5.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_9 PF13187.1 gi|55378810|ref|YP_136660.1| - 0.37 11.0 12.2 0.73 10.1 8.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55378810|ref|YP_136660.1| - 0.91 9.4 7.9 1.8 8.4 5.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55378810|ref|YP_136660.1| - 2 8.2 13.4 2.4 8.0 1.1 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55378810|ref|YP_136660.1| - 2.8 8.7 10.4 10 6.9 7.3 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|55378810|ref|YP_136660.1| - 8.2 7.0 14.3 2.4 8.7 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M54 PF07998.6 gi|161723233|ref|YP_136662.2| - 6e-21 75.0 0.0 7.6e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|161723233|ref|YP_136662.2| - 4.1e-05 23.3 0.0 4.1e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|161723233|ref|YP_136662.2| - 9.2e-05 22.5 0.0 0.0001 22.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|161723233|ref|YP_136662.2| - 0.00048 20.6 0.0 0.00062 20.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|161723233|ref|YP_136662.2| - 0.0016 17.9 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|161723233|ref|YP_136662.2| - 0.0021 18.0 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|161723233|ref|YP_136662.2| - 0.0039 16.1 0.0 0.0052 15.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF1025 PF06262.6 gi|161723233|ref|YP_136662.2| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Peptidase_M43 PF05572.8 gi|161723233|ref|YP_136662.2| - 0.017 14.7 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.3 gi|161723233|ref|YP_136662.2| - 0.042 12.3 0.2 0.058 11.8 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family DUF3152 PF11350.3 gi|161723233|ref|YP_136662.2| - 0.2 11.1 0.8 0.3 10.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3152) HAD_2 PF13419.1 gi|55378812|ref|YP_136663.1| - 9.5e-14 51.9 2.2 1.2e-11 45.1 1.5 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55378812|ref|YP_136663.1| - 2.2e-09 38.0 1.0 4.2e-09 37.1 0.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55378812|ref|YP_136663.1| - 0.00083 19.0 1.8 0.0021 17.7 0.3 2.4 2 1 0 2 2 2 1 HAD-hyrolase-like Flagellin_IN PF07196.8 gi|55378812|ref|YP_136663.1| - 0.11 12.5 0.9 0.3 11.0 0.7 1.7 1 0 0 1 1 1 0 Flagellin hook IN motif Polysacc_synt_3 PF13440.1 gi|55378814|ref|YP_136664.1| - 0.046 13.1 7.9 0.053 12.9 5.5 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Yip1 PF04893.12 gi|55378814|ref|YP_136664.1| - 0.36 10.2 14.7 0.51 9.8 2.3 2.2 1 1 1 2 2 2 0 Yip1 domain YjgP_YjgQ PF03739.9 gi|55378814|ref|YP_136664.1| - 3.9 6.1 7.1 5.4 5.6 4.9 1.2 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family F420_oxidored PF03807.12 gi|55378815|ref|YP_136665.1| - 7.6e-18 64.7 0.3 1.2e-17 64.0 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|55378815|ref|YP_136665.1| - 8.3e-05 22.0 0.1 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|55378815|ref|YP_136665.1| - 0.00013 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|55378815|ref|YP_136665.1| - 0.0017 18.6 0.1 0.0027 18.0 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|55378815|ref|YP_136665.1| - 0.006 16.2 0.4 0.012 15.3 0.3 1.5 1 0 0 1 1 1 1 KR domain adh_short PF00106.20 gi|55378815|ref|YP_136665.1| - 0.0061 16.5 6.5 0.0072 16.2 3.1 1.8 1 1 1 2 2 2 1 short chain dehydrogenase DUF2184 PF09950.4 gi|55378815|ref|YP_136665.1| - 0.038 13.0 0.2 0.052 12.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) DapB_N PF01113.15 gi|55378815|ref|YP_136665.1| - 0.12 12.2 0.2 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|55378815|ref|YP_136665.1| - 0.16 11.9 4.2 0.36 10.8 2.9 1.8 1 1 0 1 1 1 0 NADH(P)-binding Response_reg PF00072.19 gi|55378816|ref|YP_136666.1| - 4.5e-19 68.5 0.0 7.3e-19 67.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|55378816|ref|YP_136666.1| - 6.3e-09 36.1 0.0 2.1e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|55378816|ref|YP_136666.1| - 9.8e-07 28.8 0.0 2.6e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.10 gi|55378816|ref|YP_136666.1| - 0.00026 21.0 0.1 0.00056 19.9 0.0 1.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|55378816|ref|YP_136666.1| - 0.087 12.9 0.1 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 PAS fold Thioredoxin PF00085.15 gi|55378817|ref|YP_136667.1| - 9.4e-22 76.6 0.0 1.1e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|55378817|ref|YP_136667.1| - 4e-07 30.0 0.0 0.00083 19.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|55378817|ref|YP_136667.1| - 4.1e-07 30.1 0.1 9.5e-06 25.7 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|55378817|ref|YP_136667.1| - 7.3e-06 25.5 0.1 8.3e-06 25.3 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|55378817|ref|YP_136667.1| - 9.5e-05 22.1 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|55378817|ref|YP_136667.1| - 0.00014 21.5 0.3 0.11 12.1 0.1 2.0 1 1 1 2 2 2 2 AhpC/TSA family Redoxin PF08534.5 gi|55378817|ref|YP_136667.1| - 0.00018 21.0 0.4 0.014 14.9 0.0 1.9 1 1 1 2 2 2 2 Redoxin DSBA PF01323.15 gi|55378817|ref|YP_136667.1| - 0.0013 18.3 0.3 0.15 11.6 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Glutaredoxin PF00462.19 gi|55378817|ref|YP_136667.1| - 0.0024 17.8 0.1 0.0049 16.8 0.0 1.6 1 1 1 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|55378817|ref|YP_136667.1| - 0.011 15.9 0.1 0.012 15.8 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF4371 PF14291.1 gi|55378817|ref|YP_136667.1| - 0.027 14.0 0.1 0.03 13.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Thioredoxin_5 PF13743.1 gi|55378817|ref|YP_136667.1| - 0.1 12.1 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.1 gi|55378817|ref|YP_136667.1| - 0.13 12.2 2.4 0.17 11.9 0.1 2.2 2 1 0 2 2 2 0 Thioredoxin-like Sec61_beta PF03911.11 gi|55378818|ref|YP_136668.1| - 0.00021 21.0 0.0 0.00026 20.7 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family DUF402 PF04167.8 gi|55378820|ref|YP_136670.1| - 6.7e-21 73.9 1.1 1.4e-20 72.8 0.8 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|55378820|ref|YP_136670.1| - 4.7e-07 29.8 0.3 2.4e-06 27.5 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain S1_2 PF13509.1 gi|55378820|ref|YP_136670.1| - 0.016 15.0 0.0 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 S1 domain Poly_export PF02563.11 gi|55378820|ref|YP_136670.1| - 0.041 13.6 0.6 1 9.1 0.0 3.1 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein LVIVD PF08309.6 gi|55378821|ref|YP_136671.1| - 3.1e-15 54.8 2.4 1.1e-07 30.7 0.0 6.0 7 0 0 7 7 7 4 LVIVD repeat Beta_propel PF09826.4 gi|55378821|ref|YP_136671.1| - 0.065 11.5 0.0 2.3 6.4 0.0 2.5 2 1 0 2 2 2 0 Beta propeller domain Tub_2 PF04525.7 gi|55378822|ref|YP_136672.1| - 5e-08 32.5 0.9 0.00057 19.3 0.2 3.2 1 1 2 3 3 3 3 Tubby C 2 Big_3_2 PF12245.3 gi|55378822|ref|YP_136672.1| - 0.015 14.8 0.7 0.88 9.1 0.1 2.7 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Scramblase PF03803.10 gi|55378822|ref|YP_136672.1| - 0.059 12.4 0.0 8.3 5.4 0.0 2.3 1 1 1 2 2 2 0 Scramblase ABC_tran PF00005.22 gi|55378823|ref|YP_136673.1| - 1.2e-21 77.4 0.0 1.5e-10 41.4 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|55378823|ref|YP_136673.1| - 1.8e-11 43.7 0.1 0.19 10.9 0.1 4.1 3 1 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|55378823|ref|YP_136673.1| - 2.1e-11 44.3 1.9 0.0013 18.8 0.0 4.2 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|55378823|ref|YP_136673.1| - 4.8e-09 35.6 0.0 0.0015 18.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|55378823|ref|YP_136673.1| - 3.5e-06 26.5 0.0 0.099 12.0 0.0 3.1 4 0 0 4 4 2 2 AAA domain AAA_16 PF13191.1 gi|55378823|ref|YP_136673.1| - 5.6e-06 26.4 0.8 0.1 12.5 0.0 3.5 4 0 0 4 4 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|55378823|ref|YP_136673.1| - 8.8e-06 25.8 0.1 0.22 11.6 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|55378823|ref|YP_136673.1| - 6.9e-05 22.7 0.0 0.48 10.3 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|55378823|ref|YP_136673.1| - 7.4e-05 23.1 0.0 0.57 10.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|55378823|ref|YP_136673.1| - 0.00012 21.3 0.1 0.08 12.0 0.0 3.0 3 0 0 3 3 3 1 KaiC DUF258 PF03193.11 gi|55378823|ref|YP_136673.1| - 0.00031 19.9 0.0 0.73 9.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|55378823|ref|YP_136673.1| - 0.00034 20.5 13.1 0.018 15.0 1.3 3.7 4 0 0 4 4 3 1 DnaJ central domain AAA_18 PF13238.1 gi|55378823|ref|YP_136673.1| - 0.0005 20.3 0.0 1.2 9.4 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|55378823|ref|YP_136673.1| - 0.00059 19.7 0.0 0.75 9.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|55378823|ref|YP_136673.1| - 0.0012 18.3 4.8 0.14 11.5 0.0 3.5 3 1 0 3 3 3 1 AAA-like domain AAA_15 PF13175.1 gi|55378823|ref|YP_136673.1| - 0.0036 16.4 0.0 0.31 10.0 0.0 3.1 4 0 0 4 4 4 1 AAA ATPase domain Zn-ribbon_8 PF09723.5 gi|55378823|ref|YP_136673.1| - 0.0036 17.2 15.2 1.6 8.7 0.3 4.5 4 0 0 4 4 4 1 Zinc ribbon domain APS_kinase PF01583.15 gi|55378823|ref|YP_136673.1| - 0.0056 16.3 0.1 4.2 7.0 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase NACHT PF05729.7 gi|55378823|ref|YP_136673.1| - 0.014 15.0 0.1 1.6 8.3 0.0 2.8 3 0 0 3 3 3 0 NACHT domain DUF2075 PF09848.4 gi|55378823|ref|YP_136673.1| - 0.016 14.1 0.1 3.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|55378823|ref|YP_136673.1| - 0.027 15.2 10.9 0.71 10.7 0.1 4.4 5 1 1 6 6 3 0 AAA domain Viral_helicase1 PF01443.13 gi|55378823|ref|YP_136673.1| - 0.036 13.5 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|55378823|ref|YP_136673.1| - 0.036 13.4 0.2 2.4 7.5 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|55378823|ref|YP_136673.1| - 0.042 13.5 0.3 22 4.9 0.0 3.4 3 0 0 3 3 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|55378823|ref|YP_136673.1| - 0.051 13.2 0.0 8.5 5.9 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase MobB PF03205.9 gi|55378823|ref|YP_136673.1| - 0.076 12.7 0.4 3 7.5 0.1 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|55378823|ref|YP_136673.1| - 0.08 12.9 0.0 8.7 6.3 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase PRK PF00485.13 gi|55378823|ref|YP_136673.1| - 0.083 12.4 0.1 2.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|55378823|ref|YP_136673.1| - 0.22 11.6 0.0 7.2 6.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Zn_Tnp_IS91 PF14319.1 gi|55378823|ref|YP_136673.1| - 0.45 10.0 1.3 2.1 7.9 0.0 2.6 3 0 0 3 3 2 0 Transposase zinc-binding domain DUF164 PF02591.10 gi|55378823|ref|YP_136673.1| - 3.8 7.4 8.1 20 5.0 0.7 3.7 3 0 0 3 3 3 0 Putative zinc ribbon domain YhfH PF14149.1 gi|55378823|ref|YP_136673.1| - 5.1 6.9 8.7 9.7 6.0 0.0 3.4 3 0 0 3 3 2 0 YhfH-like protein Peptidase_S9 PF00326.16 gi|55378825|ref|YP_136675.1| - 8e-44 149.4 0.1 1.2e-43 148.8 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|55378825|ref|YP_136675.1| - 1.2e-13 51.0 0.1 6.3e-13 48.7 0.0 2.0 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55378825|ref|YP_136675.1| - 6.9e-11 42.4 2.2 2e-09 37.6 1.5 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|55378825|ref|YP_136675.1| - 3.8e-07 29.7 0.1 0.01 15.2 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S28 PF05577.7 gi|55378825|ref|YP_136675.1| - 4.6e-05 22.1 0.0 7e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Peptidase_S9_N PF02897.10 gi|55378825|ref|YP_136675.1| - 5.1e-05 22.0 0.5 0.00012 20.8 0.3 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.7 gi|55378825|ref|YP_136675.1| - 0.00044 19.8 2.0 0.31 10.7 0.0 5.4 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|55378825|ref|YP_136675.1| - 0.017 13.7 0.0 4.9 5.6 0.0 3.0 2 1 1 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region LIP PF03583.9 gi|55378825|ref|YP_136675.1| - 0.025 13.8 0.0 0.39 9.8 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase Pectate_lyase22 PF14583.1 gi|55378825|ref|YP_136675.1| - 0.039 12.4 0.4 0.16 10.3 0.1 2.0 2 0 0 2 2 2 0 Oligogalacturonate lyase Abhydrolase_1 PF00561.15 gi|55378825|ref|YP_136675.1| - 0.052 13.1 0.1 1.5 8.3 0.1 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Pentapeptide_4 PF13599.1 gi|55378826|ref|YP_136676.1| - 4.7e-27 93.5 7.2 1.7e-08 34.1 0.3 6.1 2 1 3 6 6 6 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|55378826|ref|YP_136676.1| - 1.3e-19 69.8 36.1 7.6e-07 28.9 1.6 9.3 2 1 6 8 8 8 7 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|55378826|ref|YP_136676.1| - 1e-07 30.9 20.2 0.067 12.4 0.1 7.9 7 3 4 11 11 11 5 Pentapeptide repeats (8 copies) BNR PF02012.15 gi|55378827|ref|YP_136677.1| - 8.8e-08 30.8 12.9 0.12 12.3 0.1 5.7 5 0 0 5 5 5 3 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|55378827|ref|YP_136677.1| - 1.6e-07 30.6 0.5 0.0047 15.9 0.1 3.3 2 1 2 4 4 4 2 Photosynthesis system II assembly factor YCF48 DUF4185 PF13810.1 gi|55378827|ref|YP_136677.1| - 0.0033 16.3 3.9 0.48 9.2 0.1 3.8 1 1 3 4 4 4 2 Domain of unknown function (DUF4185) BNR_2 PF13088.1 gi|55378827|ref|YP_136677.1| - 0.11 11.8 9.2 1 8.5 2.4 4.0 1 1 1 2 2 2 0 BNR repeat-like domain ETRAMP PF09716.5 gi|55378828|ref|YP_136678.1| - 0.13 12.2 0.1 7.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Herpes_US9 PF06072.6 gi|55378828|ref|YP_136678.1| - 0.17 11.7 2.0 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 RskA PF10099.4 gi|55378828|ref|YP_136678.1| - 1.2 8.8 6.2 3 7.5 1.1 2.1 2 0 0 2 2 2 0 Anti-sigma-K factor rskA VirB8 PF04335.8 gi|55378828|ref|YP_136678.1| - 3 7.3 6.6 3.3 7.2 1.0 2.1 2 0 0 2 2 2 0 VirB8 protein Spo7_2_N PF15407.1 gi|55378829|ref|YP_136679.1| - 0.015 14.7 0.6 6.4 6.3 0.0 2.7 3 0 0 3 3 3 0 Sporulation protein family 7 FAD_binding_3 PF01494.14 gi|55378830|ref|YP_136680.1| - 1e-17 64.2 2.6 3.5e-11 42.7 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|55378830|ref|YP_136680.1| - 1.7e-12 46.9 2.8 2.2e-07 30.1 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|55378830|ref|YP_136680.1| - 1.4e-08 34.0 0.3 0.0012 17.8 0.1 2.3 1 1 1 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|55378830|ref|YP_136680.1| - 2.1e-07 30.4 1.1 3.1e-07 29.8 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55378830|ref|YP_136680.1| - 1e-06 28.7 0.1 1.9e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55378830|ref|YP_136680.1| - 1.3e-06 27.1 0.0 3.6e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|55378830|ref|YP_136680.1| - 1.5e-05 24.0 2.2 1.8e-05 23.8 0.5 1.7 1 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|55378830|ref|YP_136680.1| - 0.00019 21.3 0.3 0.00068 19.6 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|55378830|ref|YP_136680.1| - 0.00078 18.6 0.1 0.0013 17.8 0.1 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|55378830|ref|YP_136680.1| - 0.0014 17.5 0.1 0.002 17.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|55378830|ref|YP_136680.1| - 0.0033 17.5 0.0 0.0057 16.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|55378830|ref|YP_136680.1| - 0.0044 17.0 0.0 0.023 14.6 0.0 2.0 2 0 0 2 2 2 1 NADH(P)-binding Trp_halogenase PF04820.9 gi|55378830|ref|YP_136680.1| - 0.012 14.2 1.7 1.1 7.8 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|55378830|ref|YP_136680.1| - 0.012 15.9 0.9 0.51 10.7 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|55378830|ref|YP_136680.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|55378830|ref|YP_136680.1| - 0.09 13.0 0.1 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|55378830|ref|YP_136680.1| - 0.13 12.0 0.6 1.2 8.9 0.0 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding UPF0118 PF01594.11 gi|55378831|ref|YP_136681.1| - 1.3e-32 113.0 23.4 1.7e-32 112.7 16.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Rhodanese PF00581.15 gi|55378832|ref|YP_136682.1| - 1.8e-38 131.3 0.0 3.4e-20 72.4 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|55378833|ref|YP_136683.1| - 7e-36 123.0 0.2 1.5e-18 67.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Beta-Casp PF10996.3 gi|55378835|ref|YP_136685.1| - 2.4e-20 72.7 0.0 4.3e-20 71.9 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|55378835|ref|YP_136685.1| - 4.2e-14 52.6 4.1 4.2e-14 52.6 2.8 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|55378835|ref|YP_136685.1| - 7.5e-11 41.6 0.0 1.5e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|55378835|ref|YP_136685.1| - 6e-10 38.9 0.2 1.1e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55378835|ref|YP_136685.1| - 0.0056 16.4 0.2 0.013 15.2 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RHH_1 PF01402.16 gi|55378836|ref|YP_136686.1| - 0.0025 17.6 0.3 0.004 16.9 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2238 PF09997.4 gi|55378837|ref|YP_136687.1| - 0.01 15.2 10.0 0.011 15.1 2.0 3.0 2 1 0 2 2 2 0 Predicted membrane protein (DUF2238) Cupin_2 PF07883.6 gi|55378838|ref|YP_136688.1| - 3.3e-20 71.3 1.1 3.9e-20 71.1 0.8 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|55378838|ref|YP_136688.1| - 1.6e-08 34.2 0.1 2.1e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|55378838|ref|YP_136688.1| - 1.7e-07 30.9 0.0 2.1e-07 30.6 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|55378838|ref|YP_136688.1| - 3e-06 26.4 0.1 4.5e-06 25.9 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|55378838|ref|YP_136688.1| - 3.6e-06 26.4 0.0 4.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|55378838|ref|YP_136688.1| - 0.00048 19.8 0.0 0.00049 19.7 0.0 1.1 1 0 0 1 1 1 1 Cupin DUF1498 PF07385.7 gi|55378838|ref|YP_136688.1| - 0.1 11.7 0.1 1.1 8.3 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1498) DUF21 PF01595.15 gi|55378839|ref|YP_136689.1| - 1.2e-28 99.6 0.1 1.7e-28 99.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|55378839|ref|YP_136689.1| - 1.5e-13 50.2 1.3 8e-09 35.1 0.1 2.3 2 0 0 2 2 2 2 CBS domain adh_short PF00106.20 gi|55378840|ref|YP_136690.1| - 1.4e-19 70.6 1.6 2.7e-19 69.6 1.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55378840|ref|YP_136690.1| - 1.5e-07 31.2 0.4 2.5e-07 30.5 0.3 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|55378840|ref|YP_136690.1| - 1.3e-05 25.0 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|55378840|ref|YP_136690.1| - 0.00011 21.7 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55378840|ref|YP_136690.1| - 0.0012 18.9 0.2 0.0024 17.8 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding DUF836 PF05768.9 gi|55378841|ref|YP_136691.1| - 9e-16 57.9 0.0 1e-15 57.7 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|55378841|ref|YP_136691.1| - 9.9e-07 28.6 0.2 2.2e-06 27.5 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|55378841|ref|YP_136691.1| - 5.1e-06 26.2 0.0 5.8e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.1 gi|55378841|ref|YP_136691.1| - 0.014 14.8 0.0 0.19 11.1 0.0 1.9 1 1 1 2 2 2 0 F plasmid transfer operon protein DUF3188 PF11384.3 gi|55378842|ref|YP_136692.1| - 0.01 15.4 0.6 0.019 14.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Nucleoside_tran PF01733.13 gi|55378842|ref|YP_136692.1| - 0.074 12.2 1.1 0.087 11.9 0.8 1.1 1 0 0 1 1 1 0 Nucleoside transporter DUF2644 PF10841.3 gi|55378842|ref|YP_136692.1| - 0.18 11.8 0.3 0.18 11.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2644) DUF485 PF04341.7 gi|55378842|ref|YP_136692.1| - 0.36 10.5 3.0 0.75 9.5 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF485 TMP-TENI PF02581.12 gi|55378843|ref|YP_136693.1| - 8.6e-58 194.4 4.5 1e-57 194.1 3.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|55378843|ref|YP_136693.1| - 3.5e-07 29.5 4.0 5.9e-07 28.8 2.8 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|55378843|ref|YP_136693.1| - 2.2e-05 23.7 8.3 2.6e-05 23.5 5.8 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|55378843|ref|YP_136693.1| - 0.0092 14.9 7.0 0.061 12.2 1.1 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Phage_integ_N PF09003.5 gi|55378843|ref|YP_136693.1| - 0.1 12.3 0.1 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage lambda integrase, N-terminal domain OMPdecase PF00215.19 gi|55378843|ref|YP_136693.1| - 0.14 11.5 6.7 0.87 8.9 1.6 2.2 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.7 gi|55378843|ref|YP_136693.1| - 0.14 11.0 0.4 0.33 9.8 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) PcrB PF01884.12 gi|55378843|ref|YP_136693.1| - 5.7 6.1 9.0 1.6 7.8 0.4 2.4 1 1 1 2 2 2 0 PcrB family PhoU PF01895.14 gi|55378844|ref|YP_136694.1| - 1.2e-12 48.1 0.9 2.7e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|55378844|ref|YP_136694.1| - 9.1e-07 28.4 0.0 1.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|55378845|ref|YP_136695.1| - 3.4e-34 117.1 13.9 5.6e-19 68.3 2.0 2.1 2 0 0 2 2 2 2 PhoU domain Borrelia_REV PF03978.8 gi|55378845|ref|YP_136695.1| - 0.064 12.9 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein CENP-X PF09415.5 gi|55378845|ref|YP_136695.1| - 0.17 11.6 3.6 6 6.7 0.0 3.5 3 1 0 4 4 4 0 CENP-S associating Centromere protein X ABC_tran PF00005.22 gi|55378846|ref|YP_136696.1| - 2e-31 109.1 0.0 3.9e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55378846|ref|YP_136696.1| - 1.5e-13 51.3 0.0 1.1e-07 32.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55378846|ref|YP_136696.1| - 3.2e-08 33.0 0.3 4e-06 26.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|55378846|ref|YP_136696.1| - 4.3e-05 22.7 0.0 0.049 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|55378846|ref|YP_136696.1| - 7.4e-05 22.8 0.1 0.0052 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55378846|ref|YP_136696.1| - 0.00016 21.8 0.0 0.00052 20.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55378846|ref|YP_136696.1| - 0.00037 19.9 0.0 0.00096 18.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55378846|ref|YP_136696.1| - 0.0016 17.6 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|55378846|ref|YP_136696.1| - 0.0061 16.2 0.0 1.5 8.5 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain DeoRC PF00455.17 gi|55378846|ref|YP_136696.1| - 0.01 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_23 PF13476.1 gi|55378846|ref|YP_136696.1| - 0.015 15.6 0.0 0.04 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|55378846|ref|YP_136696.1| - 0.021 14.2 0.0 0.088 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|55378846|ref|YP_136696.1| - 0.028 13.1 0.0 0.039 12.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|55378846|ref|YP_136696.1| - 0.038 13.4 0.0 0.09 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|55378846|ref|YP_136696.1| - 0.05 13.4 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|55378846|ref|YP_136696.1| - 0.12 13.2 1.4 0.24 12.2 0.3 2.3 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|55378847|ref|YP_136697.1| - 4.4e-16 58.9 20.4 4.4e-16 58.9 14.2 7.2 2 2 3 6 6 6 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55378848|ref|YP_136698.1| - 1.7e-19 70.0 10.4 1.7e-19 70.0 7.2 3.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|55378849|ref|YP_136699.1| - 1.8e-33 116.2 4.3 2.6e-33 115.6 3.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|55378849|ref|YP_136699.1| - 2.3e-10 39.7 0.3 4.8e-10 38.6 0.0 1.6 2 0 0 2 2 2 1 PBP superfamily domain TAT_signal PF10518.4 gi|55378849|ref|YP_136699.1| - 0.2 11.7 0.7 0.38 10.8 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.14 gi|55378850|ref|YP_136700.1| - 8e-23 80.7 3.1 1.1e-16 60.9 0.3 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|55378850|ref|YP_136700.1| - 1.4e-08 34.2 0.0 2.7e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ISG65-75 PF11727.3 gi|55378850|ref|YP_136700.1| - 0.16 11.0 0.0 0.27 10.2 0.0 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF1090 PF06476.7 gi|55378851|ref|YP_136701.1| - 0.59 9.8 4.6 1 9.0 3.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) PEP-utilisers_N PF05524.8 gi|55378851|ref|YP_136701.1| - 0.95 9.2 6.8 1.8 8.3 4.7 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal Rhodanese PF00581.15 gi|55378852|ref|YP_136702.1| - 3.8e-14 52.9 0.0 5.1e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|55378853|ref|YP_136703.1| - 1.5e-12 47.2 0.7 2.3e-12 46.6 0.5 1.3 1 0 0 1 1 1 1 NUDIX domain Thioredoxin_5 PF13743.1 gi|55378855|ref|YP_136705.1| - 0.13 11.8 0.7 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 Thioredoxin Acetyltransf_1 PF00583.19 gi|55378857|ref|YP_136707.1| - 1.3e-17 63.5 0.0 2e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55378857|ref|YP_136707.1| - 3.4e-14 52.9 0.0 4.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55378857|ref|YP_136707.1| - 1.8e-09 37.6 0.0 2.5e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55378857|ref|YP_136707.1| - 5.8e-09 35.8 0.0 8.8e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|55378857|ref|YP_136707.1| - 5.6e-07 29.5 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55378857|ref|YP_136707.1| - 6.2e-07 29.0 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|55378857|ref|YP_136707.1| - 1.4e-05 25.2 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55378857|ref|YP_136707.1| - 0.0022 17.8 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|55378857|ref|YP_136707.1| - 0.01 15.3 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Aconitase PF00330.15 gi|55378859|ref|YP_136708.1| - 2e-100 336.4 0.5 6.2e-69 232.6 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|55378859|ref|YP_136708.1| - 6e-21 74.9 0.0 1.1e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|55378859|ref|YP_136708.1| - 0.11 12.1 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Barwin family Prominin PF05478.6 gi|55378859|ref|YP_136708.1| - 0.37 8.2 0.0 0.51 7.8 0.0 1.1 1 0 0 1 1 1 0 Prominin dUTPase PF00692.14 gi|55378858|ref|YP_136709.1| - 1.9e-10 40.3 0.0 2.9e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 dUTPase HTH_10 PF04967.7 gi|55378860|ref|YP_136710.1| - 1.2e-15 56.7 0.0 2.2e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55378860|ref|YP_136710.1| - 0.00038 20.0 0.1 0.0025 17.4 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|55378860|ref|YP_136710.1| - 0.0037 16.7 1.1 0.0056 16.2 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|55378860|ref|YP_136710.1| - 0.0056 16.0 0.1 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|55378860|ref|YP_136710.1| - 0.0089 15.3 0.1 0.02 14.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Peptidase_C39_2 PF13529.1 gi|55378861|ref|YP_136711.1| - 0.12 12.7 0.0 0.13 12.6 0.0 1.0 1 0 0 1 1 1 0 Peptidase_C39 like family MGS PF02142.17 gi|55378862|ref|YP_136712.1| - 2.3e-15 56.2 0.0 2.8e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain QueC PF06508.8 gi|55378863|ref|YP_136713.1| - 3.5e-67 225.7 0.0 4e-67 225.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|55378863|ref|YP_136713.1| - 9e-05 22.0 0.0 0.0003 20.2 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|55378863|ref|YP_136713.1| - 0.002 17.6 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|55378863|ref|YP_136713.1| - 0.0037 15.8 0.0 0.0048 15.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|55378863|ref|YP_136713.1| - 0.054 12.3 0.0 0.091 11.6 0.0 1.5 1 1 0 1 1 1 0 NAD synthase Radical_SAM PF04055.16 gi|55378864|ref|YP_136714.1| - 5.3e-26 91.7 2.3 9.1e-26 90.9 1.6 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|55378864|ref|YP_136714.1| - 5.1e-17 62.0 0.0 1.2e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|55378864|ref|YP_136714.1| - 1e-09 38.6 0.0 2.9e-09 37.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|55378864|ref|YP_136714.1| - 0.0088 15.7 0.3 0.052 13.2 0.2 2.0 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Nif11 PF07862.6 gi|55378864|ref|YP_136714.1| - 0.15 12.0 0.1 0.42 10.5 0.1 1.8 1 1 0 1 1 1 0 Nitrogen fixation protein of unknown function PTPS PF01242.14 gi|55378865|ref|YP_136715.1| - 4.3e-25 87.7 0.0 5.4e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF1470 PF07336.6 gi|55378866|ref|YP_136716.1| - 0.056 13.7 1.0 0.074 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) Response_reg PF00072.19 gi|55378867|ref|YP_136717.1| - 2.7e-15 56.3 0.1 3.3e-15 56.0 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|55378867|ref|YP_136717.1| - 0.00034 20.6 0.1 0.00046 20.2 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Peptidase_M28 PF04389.12 gi|55378869|ref|YP_136719.1| - 2.2e-32 112.2 0.4 3.4e-32 111.6 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|55378869|ref|YP_136719.1| - 1e-12 47.6 0.0 2e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|55378869|ref|YP_136719.1| - 5.9e-06 25.9 0.4 1.1e-05 25.0 0.3 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|55378869|ref|YP_136719.1| - 4.6e-05 22.3 0.3 7.7e-05 21.6 0.2 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|55378869|ref|YP_136719.1| - 0.069 12.3 0.1 0.14 11.4 0.1 1.4 1 0 0 1 1 1 0 Nicastrin DUF2953 PF11167.3 gi|55378870|ref|YP_136720.1| - 0.091 12.6 0.1 3.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) Yip1 PF04893.12 gi|55378870|ref|YP_136720.1| - 0.13 11.7 10.3 0.15 11.5 7.1 1.0 1 0 0 1 1 1 0 Yip1 domain DUF3464 PF11947.3 gi|55378870|ref|YP_136720.1| - 0.17 11.3 5.8 0.074 12.5 1.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3464) ABC2_membrane_3 PF12698.2 gi|55378870|ref|YP_136720.1| - 0.9 8.5 4.3 1.1 8.2 3.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein FtsX PF02687.16 gi|55378870|ref|YP_136720.1| - 1.5 8.5 12.8 0.2 11.4 5.6 1.8 1 1 0 2 2 2 0 FtsX-like permease family ADH_N PF08240.7 gi|55378871|ref|YP_136721.1| - 1.2e-27 95.8 1.0 1.2e-27 95.8 0.7 2.1 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55378871|ref|YP_136721.1| - 1.9e-24 85.6 0.1 1.9e-24 85.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.16 gi|55378871|ref|YP_136721.1| - 0.00055 19.5 0.1 0.00087 18.9 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AlaDh_PNT_C PF01262.16 gi|55378871|ref|YP_136721.1| - 0.0014 18.2 0.4 0.0021 17.6 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|55378871|ref|YP_136721.1| - 0.0016 17.5 0.1 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|55378871|ref|YP_136721.1| - 0.013 15.8 1.5 0.32 11.4 0.6 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_18 PF12847.2 gi|55378871|ref|YP_136721.1| - 0.066 13.7 0.7 0.12 12.9 0.5 1.6 1 1 0 1 1 1 0 Methyltransferase domain 3HCDH_N PF02737.13 gi|55378871|ref|YP_136721.1| - 0.44 10.1 2.4 0.49 10.0 1.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer2 PF00111.22 gi|55378873|ref|YP_136723.1| - 1.6e-17 63.0 0.1 2e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|55378873|ref|YP_136723.1| - 0.023 14.4 0.1 0.041 13.7 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|55378874|ref|YP_136724.1| - 9.4e-195 647.4 0.4 1.1e-194 647.2 0.3 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|55378874|ref|YP_136724.1| - 0.0071 15.4 0.0 0.16 11.0 0.0 2.3 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Beta_propel PF09826.4 gi|55378874|ref|YP_136724.1| - 0.17 10.1 0.0 0.28 9.4 0.0 1.2 1 0 0 1 1 1 0 Beta propeller domain Epimerase PF01370.16 gi|55378875|ref|YP_136725.1| - 5.9e-22 78.2 0.1 1.6e-21 76.8 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55378875|ref|YP_136725.1| - 4.6e-08 33.2 0.1 7.4e-08 32.6 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|55378875|ref|YP_136725.1| - 2e-07 30.0 0.0 3.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|55378875|ref|YP_136725.1| - 1.1e-05 24.5 0.0 1.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|55378875|ref|YP_136725.1| - 0.0015 18.5 0.6 0.0054 16.6 0.4 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|55378875|ref|YP_136725.1| - 0.006 15.5 0.0 0.28 10.0 0.0 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|55378875|ref|YP_136725.1| - 0.0097 15.1 0.0 0.022 14.0 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|55378875|ref|YP_136725.1| - 0.0098 15.5 0.6 0.11 12.0 0.1 2.2 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|55378876|ref|YP_136726.1| - 5.3e-25 88.4 0.0 1e-24 87.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|55378876|ref|YP_136726.1| - 1.1e-12 47.6 0.0 1.2e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|55378876|ref|YP_136726.1| - 1.4e-11 44.2 0.0 1.5e-10 40.8 0.0 2.4 2 1 1 3 3 3 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55378876|ref|YP_136726.1| - 4.2e-06 25.6 0.0 6.4e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|55378876|ref|YP_136726.1| - 6.1e-06 25.3 0.0 0.0003 19.7 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|55378876|ref|YP_136726.1| - 0.0011 18.8 0.0 0.003 17.4 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.15 gi|55378876|ref|YP_136726.1| - 0.0083 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|55378876|ref|YP_136726.1| - 0.013 15.7 0.0 0.032 14.5 0.0 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|55378876|ref|YP_136726.1| - 0.019 13.9 0.1 0.088 11.7 0.0 2.2 2 1 0 2 2 2 0 Male sterility protein Glyco_trans_4_4 PF13579.1 gi|55378876|ref|YP_136726.1| - 0.021 14.9 1.4 0.39 10.8 0.0 2.7 2 1 0 3 3 3 0 Glycosyl transferase 4-like domain Fer2 PF00111.22 gi|55378877|ref|YP_136727.1| - 5.1e-13 48.5 0.6 1e-12 47.6 0.4 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_2 PF03446.10 gi|55378878|ref|YP_136728.1| - 1.2e-37 129.3 0.0 1.6e-37 128.8 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|55378878|ref|YP_136728.1| - 1.7e-23 83.2 0.0 2.4e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain TrkA_N PF02254.13 gi|55378878|ref|YP_136728.1| - 1.2e-05 25.3 0.1 2.6e-05 24.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|55378878|ref|YP_136728.1| - 1.3e-05 25.5 0.1 2.2e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|55378878|ref|YP_136728.1| - 2.2e-05 24.1 0.1 3.2e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|55378878|ref|YP_136728.1| - 0.00076 18.9 0.0 0.003 16.9 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55378878|ref|YP_136728.1| - 0.00082 18.5 0.1 0.0012 18.0 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|55378878|ref|YP_136728.1| - 0.011 15.8 0.0 0.047 13.7 0.0 1.9 1 1 1 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DapB_N PF01113.15 gi|55378878|ref|YP_136728.1| - 0.014 15.2 1.2 0.035 14.0 0.9 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.19 gi|55378878|ref|YP_136728.1| - 0.093 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF348 PF03990.9 gi|55378878|ref|YP_136728.1| - 0.59 9.7 2.8 36 4.0 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF348) Peptidase_M29 PF02073.10 gi|55378879|ref|YP_136729.1| - 1.6e-110 369.6 0.2 2e-110 369.3 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.18 gi|55378879|ref|YP_136729.1| - 0.013 15.1 0.2 0.047 13.3 0.0 2.0 2 0 0 2 2 2 0 Peptidase S24-like T2SF PF00482.18 gi|55378880|ref|YP_136730.1| - 3.1e-16 59.4 2.0 5.4e-11 42.4 0.2 4.2 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|55378880|ref|YP_136730.1| - 0.0048 15.6 0.0 0.0084 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Transport_MerF PF11431.3 gi|55378880|ref|YP_136730.1| - 6.7 6.4 12.6 0.24 11.0 0.8 3.5 3 0 0 3 3 3 0 Membrane transport protein MerF T2SE PF00437.15 gi|55378881|ref|YP_136731.1| - 1.6e-42 145.3 0.0 2.6e-42 144.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|55378881|ref|YP_136731.1| - 0.0011 18.4 0.2 0.0046 16.4 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|55378881|ref|YP_136731.1| - 0.0025 18.1 0.0 0.013 15.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|55378881|ref|YP_136731.1| - 0.0039 17.3 0.0 0.027 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|55378881|ref|YP_136731.1| - 0.0086 16.0 0.0 0.1 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|55378881|ref|YP_136731.1| - 0.06 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|55378881|ref|YP_136731.1| - 0.091 13.0 0.1 0.091 13.0 0.1 2.0 3 0 0 3 3 3 0 AAA domain KaiC PF06745.8 gi|55378882|ref|YP_136732.1| - 6.1e-17 61.4 0.1 1.2e-16 60.4 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|55378882|ref|YP_136732.1| - 2.9e-09 36.6 0.0 4e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|55378882|ref|YP_136732.1| - 0.00015 21.3 0.0 0.00032 20.3 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|55378882|ref|YP_136732.1| - 0.0016 18.6 0.0 0.0027 17.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|55378882|ref|YP_136732.1| - 0.002 17.8 0.0 0.026 14.2 0.0 2.1 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|55378882|ref|YP_136732.1| - 0.0026 17.7 0.0 0.0043 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|55378882|ref|YP_136732.1| - 0.0075 16.5 0.1 0.016 15.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|55378882|ref|YP_136732.1| - 0.026 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Resolvase PF00239.16 gi|55378882|ref|YP_136732.1| - 0.027 14.3 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain IstB_IS21 PF01695.12 gi|55378882|ref|YP_136732.1| - 0.051 12.9 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FF PF01846.14 gi|55378882|ref|YP_136732.1| - 0.08 12.9 0.2 0.3 11.0 0.1 1.9 1 1 1 2 2 2 0 FF domain APS_kinase PF01583.15 gi|55378882|ref|YP_136732.1| - 0.09 12.4 0.1 1.1 8.8 0.0 2.5 1 1 1 3 3 3 0 Adenylylsulphate kinase Arch_flagellin PF01917.11 gi|55378883|ref|YP_136733.1| - 4.4e-15 55.8 5.9 7.1e-14 51.8 4.1 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|55378883|ref|YP_136733.1| - 8.5e-08 32.1 0.4 1.2e-07 31.6 0.3 1.2 1 0 0 1 1 1 1 CARDB Hormone_2 PF00123.15 gi|55378883|ref|YP_136733.1| - 0.078 12.8 1.0 0.2 11.5 0.1 2.0 2 0 0 2 2 2 0 Peptide hormone DUF1628 PF07790.6 gi|55378883|ref|YP_136733.1| - 0.24 12.1 2.9 5.4 7.8 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) Arch_flagellin PF01917.11 gi|55378884|ref|YP_136734.1| - 1.2e-10 41.3 1.2 8.6e-10 38.5 0.8 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.8 gi|55378885|ref|YP_136735.1| - 1.3e-29 101.8 0.1 3.1e-29 100.7 0.0 1.7 2 0 0 2 2 2 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|55378885|ref|YP_136735.1| - 2.3e-22 78.6 1.9 2.3e-22 78.6 1.3 1.6 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Trypan_PARP PF05887.6 gi|55378885|ref|YP_136735.1| - 6.8e-05 22.7 44.2 6.8e-05 22.7 30.7 4.0 3 2 1 4 4 4 1 Procyclic acidic repetitive protein (PARP) CENP-F_leu_zip PF10473.4 gi|55378885|ref|YP_136735.1| - 0.028 14.2 0.6 0.049 13.4 0.4 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|55378885|ref|YP_136735.1| - 0.085 10.5 0.4 0.12 10.0 0.3 1.1 1 0 0 1 1 1 0 Myosin tail Dynamitin PF04912.9 gi|55378885|ref|YP_136735.1| - 0.086 11.6 0.3 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 Dynamitin DUF869 PF05911.6 gi|55378885|ref|YP_136735.1| - 0.16 10.1 0.3 0.23 9.6 0.2 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) TBPIP PF07106.8 gi|55378885|ref|YP_136735.1| - 0.19 11.2 0.3 0.29 10.6 0.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HpaP PF09483.5 gi|55378885|ref|YP_136735.1| - 3.1 7.7 9.6 5.4 6.9 6.6 1.3 1 0 0 1 1 1 0 Type III secretion protein (HpaP) CheD PF03975.8 gi|55378886|ref|YP_136736.1| - 6.9e-30 103.1 0.1 9.1e-30 102.7 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|55378887|ref|YP_136737.1| - 4.3e-22 77.5 0.0 1.7e-10 40.4 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|55378887|ref|YP_136737.1| - 2.2e-18 65.8 0.4 4.8e-10 39.1 0.1 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DUF3334 PF11813.3 gi|55378887|ref|YP_136737.1| - 0.28 10.6 3.0 0.39 10.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3334) Response_reg PF00072.19 gi|55378888|ref|YP_136738.1| - 3.2e-31 107.6 0.6 3.5e-31 107.4 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF3372 PF11852.3 gi|55378888|ref|YP_136738.1| - 0.035 13.2 0.1 0.038 13.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) QRPTase_C PF01729.14 gi|55378888|ref|YP_136738.1| - 0.051 13.1 2.3 0.27 10.7 0.4 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.20 gi|55378888|ref|YP_136738.1| - 0.054 12.3 0.3 0.07 12.0 0.2 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Arch_flagellin PF01917.11 gi|55378891|ref|YP_136741.1| - 1.6e-27 96.3 45.6 3.2e-19 69.2 21.5 3.5 1 1 1 2 2 2 2 Archaebacterial flagellin Motile_Sperm PF00635.21 gi|55378891|ref|YP_136741.1| - 0.14 11.8 0.3 4 7.1 0.0 2.9 3 0 0 3 3 3 0 MSP (Major sperm protein) domain DUF2499 PF10693.4 gi|55378892|ref|YP_136742.1| - 0.075 13.0 1.4 0.11 12.6 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2499) DUF2109 PF09882.4 gi|55378892|ref|YP_136742.1| - 0.14 12.1 1.6 0.23 11.4 1.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) DUF983 PF06170.7 gi|55378892|ref|YP_136742.1| - 0.4 10.8 2.1 0.69 10.0 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF983) CopD PF05425.8 gi|55378892|ref|YP_136742.1| - 1.3 9.3 7.6 1.6 8.9 5.3 1.3 1 1 0 1 1 1 0 Copper resistance protein D Rhomboid PF01694.17 gi|55378892|ref|YP_136742.1| - 1.6 8.7 8.1 2 8.4 5.6 1.1 1 0 0 1 1 1 0 Rhomboid family HTH_20 PF12840.2 gi|55378893|ref|YP_136743.1| - 1.9e-10 40.3 0.0 3.6e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55378893|ref|YP_136743.1| - 2e-05 23.8 0.0 3.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|55378893|ref|YP_136743.1| - 3e-05 23.5 0.0 5.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|55378893|ref|YP_136743.1| - 4.9e-05 22.8 0.0 8.9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|55378893|ref|YP_136743.1| - 0.0012 18.4 0.1 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|55378893|ref|YP_136743.1| - 0.0027 17.7 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain HTH_AsnC-type PF13404.1 gi|55378893|ref|YP_136743.1| - 0.0032 16.9 0.0 0.0084 15.6 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|55378893|ref|YP_136743.1| - 0.0047 16.5 0.0 0.0082 15.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RDV-p3 PF09231.5 gi|55378893|ref|YP_136743.1| - 0.04 11.3 0.1 0.042 11.2 0.1 1.0 1 0 0 1 1 1 0 Rice dwarf virus p3 HTH_27 PF13463.1 gi|55378893|ref|YP_136743.1| - 0.051 13.9 0.1 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|55378893|ref|YP_136743.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Mga PF05043.8 gi|55378893|ref|YP_136743.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain KaiC PF06745.8 gi|55378894|ref|YP_136744.1| - 7.1e-50 169.2 0.0 8.2e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|55378894|ref|YP_136744.1| - 1.2e-11 44.4 0.0 1.6e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|55378894|ref|YP_136744.1| - 0.0034 16.4 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|55378894|ref|YP_136744.1| - 0.0034 16.9 0.1 0.01 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|55378894|ref|YP_136744.1| - 0.005 16.7 0.2 0.011 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|55378894|ref|YP_136744.1| - 0.0098 14.8 0.1 0.016 14.1 0.1 1.3 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.10 gi|55378894|ref|YP_136744.1| - 0.019 13.8 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|55378894|ref|YP_136744.1| - 0.03 13.7 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|55378894|ref|YP_136744.1| - 0.038 14.1 0.0 0.084 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55378894|ref|YP_136744.1| - 0.61 10.9 3.2 3.8 8.3 2.2 2.3 1 1 0 1 1 1 0 AAA domain CheW PF01584.14 gi|55378895|ref|YP_136745.1| - 1.1e-27 96.1 0.6 1.3e-27 95.9 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.12 gi|55378896|ref|YP_136746.1| - 2.6e-60 202.9 0.3 4.5e-60 202.2 0.2 1.4 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|55378896|ref|YP_136746.1| - 2.6e-24 85.4 1.3 6.7e-24 84.0 0.4 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55378897|ref|YP_136747.1| - 3.7e-25 87.8 0.1 8.9e-25 86.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|55378897|ref|YP_136747.1| - 4.8e-20 71.3 1.2 1.2e-19 70.0 0.3 2.2 1 1 0 1 1 1 1 Hpt domain CheW PF01584.14 gi|55378897|ref|YP_136747.1| - 1e-19 70.4 1.2 2.1e-19 69.3 0.4 2.0 2 0 0 2 2 2 1 CheW-like domain H-kinase_dim PF02895.9 gi|55378897|ref|YP_136747.1| - 4.5e-09 36.5 3.4 4.5e-09 36.5 2.4 2.6 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|55378897|ref|YP_136747.1| - 1.8e-08 34.1 0.0 4.8e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_5 PF14501.1 gi|55378897|ref|YP_136747.1| - 0.024 14.3 0.0 0.13 11.9 0.0 2.2 1 1 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.1 gi|55378897|ref|YP_136747.1| - 0.062 13.1 0.1 0.062 13.1 0.1 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain CheR PF01739.13 gi|55378898|ref|YP_136748.1| - 2.1e-50 170.7 0.0 2.7e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|55378898|ref|YP_136748.1| - 3e-07 29.7 0.5 3e-07 29.7 0.3 2.8 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|55378898|ref|YP_136748.1| - 7.9e-06 26.2 0.1 0.00077 19.8 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378898|ref|YP_136748.1| - 5e-05 23.8 0.0 9.1e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55378898|ref|YP_136748.1| - 0.0029 17.2 0.0 0.04 13.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55378898|ref|YP_136748.1| - 0.015 15.6 0.0 0.038 14.3 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55378898|ref|YP_136748.1| - 0.02 15.3 0.3 0.38 11.2 0.2 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55378898|ref|YP_136748.1| - 0.026 14.2 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HEAT_2 PF13646.1 gi|55378899|ref|YP_136749.1| - 5e-60 199.7 28.5 3.7e-19 68.7 0.1 5.9 1 1 5 6 6 6 6 HEAT repeats HEAT PF02985.17 gi|55378899|ref|YP_136749.1| - 1.3e-29 99.5 5.6 0.0023 17.8 0.0 11.1 12 0 0 12 12 12 6 HEAT repeat HEAT_EZ PF13513.1 gi|55378899|ref|YP_136749.1| - 2.2e-26 91.6 24.3 5.3e-06 26.7 0.1 9.5 7 2 3 10 10 10 6 HEAT-like repeat HEAT_PBS PF03130.11 gi|55378899|ref|YP_136749.1| - 7.4e-23 78.6 12.0 7.9e-05 22.7 0.3 10.2 10 0 0 10 10 10 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|55378899|ref|YP_136749.1| - 2.5e-15 55.6 0.2 0.053 13.3 0.0 9.1 10 0 0 10 10 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|55378899|ref|YP_136749.1| - 2.7e-10 39.2 1.0 0.0011 17.3 0.1 4.8 2 2 3 5 5 5 2 Adaptin N terminal region Cnd1 PF12717.2 gi|55378899|ref|YP_136749.1| - 1.9e-07 31.0 2.1 0.17 11.7 0.0 5.4 3 1 1 5 5 5 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|55378899|ref|YP_136749.1| - 0.00064 20.0 0.5 8.7 6.8 0.0 4.9 4 1 1 6 6 6 1 Vacuolar 14 Fab1-binding region Vitellogenin_N PF01347.17 gi|55378899|ref|YP_136749.1| - 0.008 14.4 0.0 1.4 7.0 0.0 2.5 2 0 0 2 2 2 2 Lipoprotein amino terminal region Imm16 PF15565.1 gi|55378899|ref|YP_136749.1| - 0.041 13.7 7.2 0.86 9.4 0.2 3.5 3 1 1 4 4 3 0 Immunity protein 16 ThylakoidFormat PF11264.3 gi|55378899|ref|YP_136749.1| - 0.061 12.9 0.0 8 6.0 0.0 2.7 3 0 0 3 3 3 0 Thylakoid formation protein Catalase-rel PF06628.7 gi|55378899|ref|YP_136749.1| - 0.12 12.2 0.5 10 6.0 0.0 3.6 3 0 0 3 3 3 0 Catalase-related immune-responsive CLASP_N PF12348.3 gi|55378899|ref|YP_136749.1| - 0.18 11.1 0.6 12 5.2 0.0 3.4 3 1 0 4 4 4 0 CLASP N terminal Cohesin_HEAT PF12765.2 gi|55378899|ref|YP_136749.1| - 0.19 11.7 8.8 1.3 9.0 0.1 4.3 4 0 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion GlutR_dimer PF00745.15 gi|55378899|ref|YP_136749.1| - 0.39 10.7 4.1 24 4.9 0.2 3.8 3 1 1 4 4 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain Aconitase_B_N PF11791.3 gi|55378899|ref|YP_136749.1| - 1.5 8.5 4.4 38 4.0 0.1 4.2 3 2 2 5 5 5 0 Aconitate B N-terminal domain CheF-arch PF04283.7 gi|55378900|ref|YP_136750.1| - 1e-65 221.0 1.6 1.1e-65 220.9 0.3 1.6 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea bPH_2 PF03703.9 gi|55378900|ref|YP_136750.1| - 0.031 14.2 0.0 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial PH domain bPH_3 PF14470.1 gi|55378900|ref|YP_136750.1| - 0.091 13.0 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain Response_reg PF00072.19 gi|55378901|ref|YP_136751.1| - 6.1e-20 71.3 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|55378901|ref|YP_136751.1| - 1.7e-11 44.0 0.0 1.3e-10 41.2 0.0 2.5 3 0 0 3 3 3 1 PAS fold GAF PF01590.21 gi|55378901|ref|YP_136751.1| - 1.7e-10 41.2 0.0 2.8e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|55378901|ref|YP_136751.1| - 6.1e-10 39.7 0.2 7.3e-09 36.2 0.1 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55378901|ref|YP_136751.1| - 2.3e-08 34.2 0.1 4.9e-07 29.9 0.0 2.5 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|55378901|ref|YP_136751.1| - 0.00075 19.8 0.0 0.0019 18.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|55378901|ref|YP_136751.1| - 0.0023 17.9 0.0 0.0045 17.0 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.19 gi|55378901|ref|YP_136751.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 PAS fold Ribosomal_S6e PF01092.14 gi|55378902|ref|YP_136752.1| - 5.5e-49 165.0 1.0 6.4e-49 164.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e KH_4 PF13083.1 gi|55378902|ref|YP_136752.1| - 0.055 13.1 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 KH domain CheF-arch PF04283.7 gi|55378903|ref|YP_136753.1| - 6.5e-65 218.4 0.0 8.9e-65 217.9 0.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.14 gi|55378903|ref|YP_136753.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55378903|ref|YP_136753.1| - 0.064 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF3553 PF12073.3 gi|55378903|ref|YP_136753.1| - 0.14 11.5 0.1 0.65 9.3 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3553) CVNH PF08881.5 gi|55378903|ref|YP_136753.1| - 0.15 12.3 0.0 11 6.2 0.0 2.5 2 1 0 2 2 2 0 CVNH domain DHHA1 PF02272.14 gi|55378907|ref|YP_136757.1| - 0.00043 19.9 0.2 0.0011 18.6 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|55378907|ref|YP_136757.1| - 0.00088 18.9 0.0 0.0027 17.3 0.0 1.8 2 0 0 2 2 2 1 DHH family DUF3364 PF11844.3 gi|55378907|ref|YP_136757.1| - 0.061 13.3 0.7 0.43 10.6 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3364) DUF2795 PF11387.3 gi|55378907|ref|YP_136757.1| - 0.07 13.0 2.5 11 5.9 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) HATPase_c PF02518.21 gi|55378908|ref|YP_136758.1| - 9.8e-21 73.5 0.0 1.8e-20 72.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55378908|ref|YP_136758.1| - 1.6e-14 53.8 0.3 3.5e-14 52.7 0.1 1.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|55378908|ref|YP_136758.1| - 1.2e-10 41.2 0.5 1.2e-10 41.2 0.3 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|55378908|ref|YP_136758.1| - 3.6e-06 27.3 0.0 9.9e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|55378908|ref|YP_136758.1| - 0.00038 20.2 0.1 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55378908|ref|YP_136758.1| - 0.0058 16.2 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H_kinase_N PF12282.3 gi|55378908|ref|YP_136758.1| - 0.024 14.2 0.1 0.051 13.1 0.0 1.6 2 0 0 2 2 2 0 Signal transduction histidine kinase Usp PF00582.21 gi|55378910|ref|YP_136759.1| - 7.5e-35 120.1 2.9 8.6e-35 119.9 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|55378910|ref|YP_136759.1| - 0.0078 16.3 0.3 0.011 15.9 0.2 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain ETF PF01012.16 gi|55378910|ref|YP_136759.1| - 0.023 14.3 5.9 0.041 13.5 4.1 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Acetyltransf_6 PF13480.1 gi|55378910|ref|YP_136759.1| - 0.035 14.0 0.6 0.048 13.6 0.3 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1778 PF08681.6 gi|55378910|ref|YP_136759.1| - 0.062 13.1 0.4 0.13 12.1 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) Usp PF00582.21 gi|55378909|ref|YP_136760.1| - 1.2e-14 54.6 2.6 3.4e-14 53.2 1.8 1.6 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.19 gi|55378911|ref|YP_136761.1| - 9.8e-18 63.9 0.0 1.4e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55378911|ref|YP_136761.1| - 3.4e-11 43.2 0.0 4.2e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|55378911|ref|YP_136761.1| - 3.9e-09 36.8 0.0 5e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55378911|ref|YP_136761.1| - 1.9e-07 31.1 0.0 3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55378911|ref|YP_136761.1| - 1.1e-06 28.2 0.0 2e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|55378911|ref|YP_136761.1| - 4.2e-06 26.7 0.0 5.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55378911|ref|YP_136761.1| - 0.012 15.4 0.0 0.098 12.5 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55378911|ref|YP_136761.1| - 0.078 12.8 0.1 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|55378911|ref|YP_136761.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|55378912|ref|YP_136762.1| - 2.6e-15 56.8 0.0 4.5e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Universal stress protein family DUF4203 PF13886.1 gi|55378914|ref|YP_136764.1| - 3.2 7.1 12.8 11 5.4 9.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) 2OG-FeII_Oxy_2 PF13532.1 gi|55378915|ref|YP_136765.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily ABC_tran PF00005.22 gi|55378916|ref|YP_136766.1| - 5e-57 192.0 0.0 5.4e-32 110.9 0.0 3.4 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|55378916|ref|YP_136766.1| - 3.3e-39 133.0 2.8 2.1e-20 72.8 0.2 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|55378916|ref|YP_136766.1| - 1.1e-16 61.6 0.1 6.5e-08 32.8 0.0 3.9 3 1 1 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|55378916|ref|YP_136766.1| - 1.8e-06 27.3 0.7 0.033 13.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55378916|ref|YP_136766.1| - 2.8e-06 27.4 0.6 0.023 14.7 0.0 3.3 3 0 0 3 3 3 2 AAA ATPase domain SMC_N PF02463.14 gi|55378916|ref|YP_136766.1| - 3.3e-05 23.2 0.1 0.15 11.2 0.0 3.4 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AIG1 PF04548.11 gi|55378916|ref|YP_136766.1| - 0.00035 19.7 1.4 0.3 10.1 0.1 3.2 3 0 0 3 3 3 1 AIG1 family AAA_22 PF13401.1 gi|55378916|ref|YP_136766.1| - 0.00042 20.4 1.9 0.3 11.2 0.1 3.6 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|55378916|ref|YP_136766.1| - 0.00069 19.0 1.0 2.1 7.7 0.0 3.8 5 0 0 5 5 5 2 AAA domain ATP-synt_ab PF00006.20 gi|55378916|ref|YP_136766.1| - 0.0026 17.2 0.0 1.8 7.9 0.0 2.4 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|55378916|ref|YP_136766.1| - 0.0073 16.5 0.1 0.27 11.4 0.0 3.1 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55378916|ref|YP_136766.1| - 0.0077 15.9 0.4 0.41 10.3 0.0 2.7 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_15 PF13175.1 gi|55378916|ref|YP_136766.1| - 0.015 14.3 0.2 4.1 6.3 0.0 2.7 4 0 0 4 4 4 0 AAA ATPase domain AAA_10 PF12846.2 gi|55378916|ref|YP_136766.1| - 0.016 14.6 0.6 10 5.4 0.2 3.2 3 1 0 4 4 4 0 AAA-like domain DUF258 PF03193.11 gi|55378916|ref|YP_136766.1| - 0.023 13.9 1.8 2.5 7.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function, DUF258 Hpr_kinase_C PF07475.7 gi|55378916|ref|YP_136766.1| - 0.023 14.0 1.2 1.2 8.4 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_18 PF13238.1 gi|55378916|ref|YP_136766.1| - 0.023 14.9 0.2 1.4 9.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain PRK PF00485.13 gi|55378916|ref|YP_136766.1| - 0.042 13.4 0.1 0.89 9.0 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.21 gi|55378916|ref|YP_136766.1| - 0.044 13.2 0.3 13 5.1 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain MobB PF03205.9 gi|55378916|ref|YP_136766.1| - 0.047 13.3 0.2 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|55378916|ref|YP_136766.1| - 0.088 11.6 1.2 5.8 5.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|55378916|ref|YP_136766.1| - 0.14 12.3 0.2 6.4 6.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase KaiC PF06745.8 gi|55378916|ref|YP_136766.1| - 0.16 11.0 0.4 13 4.8 0.0 2.4 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.1 gi|55378916|ref|YP_136766.1| - 0.22 11.4 2.1 22 5.0 0.0 3.6 3 2 0 3 3 2 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|55378916|ref|YP_136766.1| - 0.35 10.6 1.8 7.3 6.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 SBP_bac_5 PF00496.17 gi|55378917|ref|YP_136767.1| - 1.8e-75 254.1 3.9 2.4e-75 253.6 2.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|55378917|ref|YP_136767.1| - 0.0004 20.1 4.0 0.0011 18.7 2.8 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|55378917|ref|YP_136767.1| - 0.12 11.5 0.6 0.23 10.6 0.4 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|55378918|ref|YP_136768.1| - 1.6e-38 132.1 12.8 1.6e-38 132.1 8.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55378919|ref|YP_136769.1| - 1.8e-34 118.9 7.7 1.8e-34 118.9 5.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|55378919|ref|YP_136769.1| - 0.0002 20.6 0.0 0.0002 20.6 0.0 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Amidohydro_4 PF13147.1 gi|55378921|ref|YP_136771.1| - 1.9e-30 106.8 11.0 2.4e-30 106.4 7.6 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|55378921|ref|YP_136771.1| - 2.4e-18 66.8 0.0 6.6e-18 65.4 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|55378921|ref|YP_136771.1| - 9.3e-13 47.8 0.1 4.3e-12 45.6 0.0 2.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55378921|ref|YP_136771.1| - 0.00034 19.9 13.9 0.41 9.8 7.3 3.1 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.16 gi|55378921|ref|YP_136771.1| - 0.00049 19.3 0.3 0.014 14.6 0.2 2.9 1 1 0 1 1 1 1 TatD related DNase Usp PF00582.21 gi|55378921|ref|YP_136771.1| - 0.0016 18.6 1.5 0.005 17.0 0.1 2.5 2 1 1 3 3 3 1 Universal stress protein family DHOase PF12890.2 gi|55378921|ref|YP_136771.1| - 0.059 13.0 0.0 0.21 11.2 0.0 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like BPL_LplA_LipB PF03099.14 gi|55378922|ref|YP_136772.1| - 7.8e-06 25.9 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF4129 PF13559.1 gi|55378922|ref|YP_136772.1| - 0.12 12.3 7.0 0.13 12.2 3.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) Isochorismatase PF00857.15 gi|55378924|ref|YP_136774.1| - 2.8e-51 173.9 0.0 3.2e-51 173.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_MA_2 PF13485.1 gi|55378925|ref|YP_136775.1| - 0.0023 17.9 0.0 0.0023 17.9 0.0 2.7 3 1 1 4 4 4 1 Peptidase MA superfamily DUF955 PF06114.8 gi|55378925|ref|YP_136775.1| - 0.0052 16.5 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|55378925|ref|YP_136775.1| - 0.03 13.9 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.1 gi|55378925|ref|YP_136775.1| - 0.036 14.1 0.1 0.087 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.4 gi|55378925|ref|YP_136775.1| - 0.095 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|55378926|ref|YP_136776.1| - 1.9e-05 24.6 0.0 6e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Peptidase MA superfamily DUF955 PF06114.8 gi|55378926|ref|YP_136776.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF955) DSS1_SEM1 PF05160.8 gi|55378926|ref|YP_136776.1| - 0.044 13.5 1.5 0.093 12.5 0.0 2.2 2 0 0 2 2 2 0 DSS1/SEM1 family Peptidase_M76 PF09768.4 gi|55378926|ref|YP_136776.1| - 0.05 13.0 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family DUF4157 PF13699.1 gi|55378926|ref|YP_136776.1| - 0.098 12.8 0.3 0.35 11.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) QRPTase_C PF01729.14 gi|55378928|ref|YP_136778.1| - 2.1e-16 59.9 0.0 2.9e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|55378928|ref|YP_136778.1| - 9.9e-06 25.2 0.0 3e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Cys_rich_CPCC PF14206.1 gi|55378930|ref|YP_136780.1| - 1.6e-29 101.2 1.0 1.9e-29 101.0 0.7 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC RecR PF02132.10 gi|55378930|ref|YP_136780.1| - 0.29 10.5 2.8 13 5.3 2.5 2.6 2 1 1 3 3 3 0 RecR protein Zip PF02535.17 gi|55378931|ref|YP_136781.1| - 3.9e-21 75.3 10.3 3.6e-16 59.0 3.3 2.1 1 1 0 2 2 2 2 ZIP Zinc transporter GtrA PF04138.9 gi|55378931|ref|YP_136781.1| - 0.13 12.2 0.1 0.13 12.2 0.1 2.7 2 1 1 3 3 3 0 GtrA-like protein YhhN PF07947.9 gi|55378931|ref|YP_136781.1| - 0.35 10.2 6.1 0.55 9.5 1.6 2.6 2 1 0 2 2 2 0 YhhN-like protein Gly-zipper_OmpA PF13436.1 gi|55378931|ref|YP_136781.1| - 1.6 8.4 4.1 39 3.9 0.0 3.3 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain Peptidase_M50 PF02163.17 gi|55378932|ref|YP_136782.1| - 3.7e-16 58.6 5.9 6.1e-16 57.9 4.1 1.2 1 0 0 1 1 1 1 Peptidase family M50 CBS PF00571.23 gi|55378932|ref|YP_136782.1| - 0.00012 21.7 0.6 0.00054 19.6 0.1 2.1 2 0 0 2 2 2 1 CBS domain DUF4622 PF15415.1 gi|55378932|ref|YP_136782.1| - 0.21 10.3 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4622) Lactamase_B_3 PF13483.1 gi|55378933|ref|YP_136783.1| - 2.5e-24 85.8 0.0 3e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain IF-2B PF01008.12 gi|55378934|ref|YP_136784.1| - 1.8e-54 184.6 1.4 2.3e-54 184.2 1.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|55378934|ref|YP_136784.1| - 3.1e-11 43.0 1.0 5.2e-11 42.3 0.7 1.4 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|55378934|ref|YP_136784.1| - 0.082 12.3 0.0 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 NUDIX domain Aminotran_5 PF00266.14 gi|55378935|ref|YP_136785.1| - 8e-60 202.5 0.0 9.6e-60 202.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|55378935|ref|YP_136785.1| - 0.034 12.4 0.0 0.05 11.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Relaxase PF03432.9 gi|55378936|ref|YP_136786.1| - 0.062 12.6 0.1 0.083 12.2 0.1 1.2 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain DUF3828 PF12883.2 gi|55378936|ref|YP_136786.1| - 0.069 13.0 0.1 0.26 11.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3828) DUF2318 PF10080.4 gi|55378936|ref|YP_136786.1| - 0.076 12.7 0.5 0.13 12.0 0.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) ALIX_LYPXL_bnd PF13949.1 gi|55378937|ref|YP_136787.1| - 1.1e-05 24.5 23.4 1.1e-05 24.5 16.2 2.6 2 1 0 2 2 2 1 ALIX V-shaped domain binding to HIV AAA_13 PF13166.1 gi|55378937|ref|YP_136787.1| - 3.2e-05 22.6 50.2 0.047 12.1 9.3 3.2 1 1 1 3 3 3 3 AAA domain Seryl_tRNA_N PF02403.17 gi|55378937|ref|YP_136787.1| - 0.0002 21.3 61.8 0.00076 19.4 3.9 5.3 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|55378937|ref|YP_136787.1| - 0.00024 19.8 65.2 0.087 11.4 6.5 4.7 2 2 1 4 4 4 3 Spc7 kinetochore protein TBPIP PF07106.8 gi|55378937|ref|YP_136787.1| - 0.0006 19.3 59.5 0.074 12.5 6.8 4.7 2 2 2 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_23 PF13476.1 gi|55378937|ref|YP_136787.1| - 0.00075 19.8 59.9 6.1 7.1 27.0 4.2 1 1 1 2 2 1 0 AAA domain Atg14 PF10186.4 gi|55378937|ref|YP_136787.1| - 0.0014 17.6 57.6 0.0023 16.9 11.8 4.2 1 1 4 5 5 5 2 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|55378937|ref|YP_136787.1| - 0.0025 17.0 21.2 0.0025 17.0 14.7 4.1 2 2 2 4 4 4 1 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.6 gi|55378937|ref|YP_136787.1| - 0.0025 17.2 58.6 0.1 12.0 6.0 5.6 2 2 3 5 5 5 2 Phage minor structural protein GP20 DivIC PF04977.10 gi|55378937|ref|YP_136787.1| - 0.0025 17.2 0.5 0.0025 17.2 0.3 8.6 4 2 5 9 9 9 4 Septum formation initiator IncA PF04156.9 gi|55378937|ref|YP_136787.1| - 0.0034 17.0 32.1 0.0034 17.0 22.3 4.7 1 1 1 3 3 3 2 IncA protein Laminin_II PF06009.7 gi|55378937|ref|YP_136787.1| - 0.0034 17.1 8.0 0.0034 17.1 5.5 5.0 3 2 2 5 5 5 1 Laminin Domain II Baculo_PEP_C PF04513.7 gi|55378937|ref|YP_136787.1| - 0.0051 16.6 22.2 0.27 11.0 1.6 4.8 4 1 1 5 5 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|55378937|ref|YP_136787.1| - 0.0061 15.7 18.8 0.36 9.9 0.6 4.1 2 2 2 4 4 4 4 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|55378937|ref|YP_136787.1| - 0.0071 13.7 60.5 0.066 10.5 17.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) Myosin_tail_1 PF01576.14 gi|55378937|ref|YP_136787.1| - 0.0094 13.7 74.7 0.11 10.2 21.7 3.2 2 1 0 2 2 2 2 Myosin tail Tropomyosin_1 PF12718.2 gi|55378937|ref|YP_136787.1| - 0.011 15.5 89.7 0.03 14.1 17.4 5.1 2 2 2 4 4 4 0 Tropomyosin like FliJ PF02050.11 gi|55378937|ref|YP_136787.1| - 0.016 15.2 2.9 0.016 15.2 2.0 5.5 4 2 3 7 7 5 0 Flagellar FliJ protein TMF_DNA_bd PF12329.3 gi|55378937|ref|YP_136787.1| - 0.061 13.1 75.2 0.22 11.3 0.7 7.6 4 2 4 8 8 7 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|55378937|ref|YP_136787.1| - 0.11 12.5 44.5 0.026 14.6 7.9 5.2 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family TPR_MLP1_2 PF07926.7 gi|55378937|ref|YP_136787.1| - 0.14 11.9 58.4 0.25 11.0 9.8 5.8 3 2 4 7 7 7 0 TPR/MLP1/MLP2-like protein ATG16 PF08614.6 gi|55378937|ref|YP_136787.1| - 0.25 11.1 71.2 0.25 11.1 10.4 5.7 2 2 3 5 5 5 0 Autophagy protein 16 (ATG16) WEMBL PF05701.6 gi|55378937|ref|YP_136787.1| - 0.28 9.5 56.6 0.4 9.1 14.5 2.5 2 1 0 2 2 2 0 Weak chloroplast movement under blue light NPV_P10 PF05531.7 gi|55378937|ref|YP_136787.1| - 0.33 11.2 41.7 0.2 11.9 0.7 7.2 2 2 3 5 5 4 0 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.1 gi|55378937|ref|YP_136787.1| - 0.4 10.6 69.4 5.3 7.0 1.4 6.9 3 2 2 6 6 6 0 Domain of unknown function (DUF4200) DUF342 PF03961.8 gi|55378937|ref|YP_136787.1| - 0.52 8.6 47.7 1.2 7.4 7.5 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF342) CENP-F_leu_zip PF10473.4 gi|55378937|ref|YP_136787.1| - 0.68 9.7 78.3 1.3 8.8 3.9 5.6 2 2 3 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spectrin PF00435.16 gi|55378937|ref|YP_136787.1| - 0.69 10.2 53.8 2.6 8.3 4.3 5.8 3 1 2 5 5 5 0 Spectrin repeat EzrA PF06160.7 gi|55378937|ref|YP_136787.1| - 0.88 7.6 50.4 0.65 8.1 13.0 2.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA AAA_27 PF13514.1 gi|55378937|ref|YP_136787.1| - 0.95 7.0 64.8 0.069 10.8 9.4 3.3 1 1 1 3 3 3 0 AAA domain Filament PF00038.16 gi|55378937|ref|YP_136787.1| - 1.4 8.2 66.2 0.032 13.6 17.2 4.2 2 2 1 3 3 3 0 Intermediate filament protein DUF812 PF05667.6 gi|55378937|ref|YP_136787.1| - 1.9 6.8 58.7 1.9 6.9 10.2 3.5 1 1 0 3 3 3 0 Protein of unknown function (DUF812) Mnd1 PF03962.10 gi|55378937|ref|YP_136787.1| - 3 7.4 58.8 0.56 9.8 1.9 4.8 2 2 2 4 4 4 0 Mnd1 family AAA_21 PF13304.1 gi|55378937|ref|YP_136787.1| - 3 7.7 11.6 0.48 10.3 3.4 2.4 2 0 0 2 2 2 0 AAA domain GLE1 PF07817.8 gi|55378937|ref|YP_136787.1| - 3.1 6.6 15.1 0.47 9.3 0.5 3.4 4 1 0 4 4 4 0 GLE1-like protein FlxA PF14282.1 gi|55378937|ref|YP_136787.1| - 3.3 7.6 50.3 1.4 8.9 4.6 5.2 2 2 2 4 4 4 0 FlxA-like protein Laminin_I PF06008.9 gi|55378937|ref|YP_136787.1| - 3.8 6.7 46.4 0.63 9.3 14.5 3.9 2 2 0 3 3 3 0 Laminin Domain I DUF1664 PF07889.7 gi|55378937|ref|YP_136787.1| - 6.3 6.6 45.0 0.13 12.0 0.9 5.7 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) DUF1292 PF06949.6 gi|55378938|ref|YP_136788.1| - 0.057 13.7 0.0 0.085 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1292) CRCB PF02537.10 gi|55378939|ref|YP_136789.1| - 8.7e-20 70.7 11.5 1.2e-19 70.3 8.0 1.2 1 0 0 1 1 1 1 CrcB-like protein Herpes_pp38 PF04846.8 gi|55378939|ref|YP_136789.1| - 0.35 10.2 4.3 2.6 7.3 0.1 2.6 2 1 0 2 2 2 0 Herpesvirus pp38 phosphoprotein CRCB PF02537.10 gi|55378940|ref|YP_136790.1| - 5.5e-23 81.0 12.7 6.5e-23 80.8 8.8 1.0 1 0 0 1 1 1 1 CrcB-like protein AAA_10 PF12846.2 gi|55378941|ref|YP_136791.1| - 2e-16 60.3 0.0 2.6e-10 40.2 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|55378941|ref|YP_136791.1| - 1.1e-07 30.5 0.5 0.0017 16.7 0.1 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|55378941|ref|YP_136791.1| - 1.2e-06 28.1 0.2 0.0038 16.7 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|55378941|ref|YP_136791.1| - 0.00016 21.5 0.0 0.00032 20.6 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|55378941|ref|YP_136791.1| - 0.0012 17.5 0.0 0.89 8.1 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|55378941|ref|YP_136791.1| - 0.018 15.1 0.0 1.8 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|55378941|ref|YP_136791.1| - 0.12 11.9 2.0 0.84 9.1 1.4 2.4 1 1 0 1 1 1 0 AAA domain Zot PF05707.7 gi|55378941|ref|YP_136791.1| - 0.14 11.5 0.2 5 6.5 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Big_1 PF02369.11 gi|55378942|ref|YP_136792.1| - 7.2e-05 22.6 7.7 0.00012 21.9 5.3 1.4 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|55378942|ref|YP_136792.1| - 0.0007 19.6 6.6 0.0007 19.6 4.6 1.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|55378942|ref|YP_136792.1| - 0.021 14.4 0.3 0.044 13.4 0.2 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) DUF4480 PF13715.1 gi|55378942|ref|YP_136792.1| - 0.032 14.2 0.5 0.052 13.5 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|55378942|ref|YP_136792.1| - 0.043 14.3 0.9 0.066 13.7 0.6 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain YtkA PF13115.1 gi|55378942|ref|YP_136792.1| - 0.052 13.8 3.1 0.37 11.1 1.8 2.1 1 1 1 2 2 2 0 YtkA-like Sarcoglycan_1 PF04790.8 gi|55378942|ref|YP_136792.1| - 0.12 11.5 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein PCMT PF01135.14 gi|55378943|ref|YP_136793.1| - 1.9e-37 128.8 0.0 2.5e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|55378943|ref|YP_136793.1| - 6e-08 32.4 0.0 7.5e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378943|ref|YP_136793.1| - 3e-07 31.0 0.3 5.2e-07 30.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55378943|ref|YP_136793.1| - 8.7e-07 28.4 0.1 1.7e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|55378943|ref|YP_136793.1| - 2.3e-06 27.6 1.8 4.6e-06 26.6 1.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|55378943|ref|YP_136793.1| - 7.9e-05 21.8 0.0 0.00014 21.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|55378943|ref|YP_136793.1| - 0.00026 21.3 0.0 0.00046 20.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55378943|ref|YP_136793.1| - 0.0013 19.1 0.0 0.0029 18.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55378943|ref|YP_136793.1| - 0.0094 15.6 0.0 0.018 14.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain FAD_binding_2 PF00890.19 gi|55378943|ref|YP_136793.1| - 0.019 13.8 0.9 0.028 13.2 0.5 1.4 1 1 0 1 1 1 0 FAD binding domain PrmA PF06325.8 gi|55378943|ref|YP_136793.1| - 0.019 14.0 0.2 0.079 12.0 0.1 1.8 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|55378943|ref|YP_136793.1| - 0.025 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|55378943|ref|YP_136793.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|55378944|ref|YP_136794.1| - 2e-45 154.9 0.0 2.2e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|55378944|ref|YP_136794.1| - 4.2e-07 30.0 0.1 4.6e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55378944|ref|YP_136794.1| - 4.6e-07 30.4 0.0 5.2e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|55378944|ref|YP_136794.1| - 5.2e-06 26.1 0.0 5.6e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|55378944|ref|YP_136794.1| - 2.5e-05 23.9 0.0 2.7e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|55378944|ref|YP_136794.1| - 0.00056 19.0 0.0 0.0007 18.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|55378944|ref|YP_136794.1| - 0.00097 18.5 0.0 0.0013 18.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|55378944|ref|YP_136794.1| - 0.0048 16.0 0.0 0.0064 15.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|55378944|ref|YP_136794.1| - 0.0072 15.3 0.0 0.009 15.0 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase DUF938 PF06080.7 gi|55378944|ref|YP_136794.1| - 0.015 14.8 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Lar_restr_allev PF14354.1 gi|55378945|ref|YP_136795.1| - 0.011 16.0 0.4 0.031 14.5 0.3 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|55378945|ref|YP_136795.1| - 0.013 15.0 0.9 0.032 13.7 0.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|55378945|ref|YP_136795.1| - 0.015 15.2 0.8 0.032 14.1 0.6 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF4265 PF14085.1 gi|55378945|ref|YP_136795.1| - 0.028 14.1 0.1 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) zinc_ribbon_4 PF13717.1 gi|55378945|ref|YP_136795.1| - 0.083 12.5 2.2 0.36 10.5 1.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain GTP_EFTU_D2 PF03144.20 gi|55378945|ref|YP_136795.1| - 0.098 12.7 0.1 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 Elongation factor Tu domain 2 DUF1648 PF07853.6 gi|55378946|ref|YP_136796.1| - 1.5e-18 66.0 0.7 1.5e-18 66.0 0.5 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) DUF3995 PF13160.1 gi|55378946|ref|YP_136796.1| - 0.0091 16.0 5.5 0.0091 16.0 3.8 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3995) FUSC_2 PF13515.1 gi|55378946|ref|YP_136796.1| - 1.8 8.4 9.0 0.63 9.9 4.1 1.8 1 1 1 2 2 2 0 Fusaric acid resistance protein-like Peptidase_M29 PF02073.10 gi|55378947|ref|YP_136797.1| - 3.4e-20 72.2 0.3 4.1e-17 62.0 0.2 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.15 gi|55378948|ref|YP_136798.1| - 2.1e-18 66.2 0.0 3.9e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|55378948|ref|YP_136798.1| - 5.1e-17 62.2 0.3 5.2e-16 58.9 0.4 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|55378948|ref|YP_136798.1| - 3.7e-08 33.3 0.2 8.9e-08 32.0 0.1 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|55378948|ref|YP_136798.1| - 0.0032 16.6 0.2 0.033 13.3 0.2 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|55378948|ref|YP_136798.1| - 0.0034 17.7 0.1 0.019 15.3 0.0 2.3 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|55378948|ref|YP_136798.1| - 0.029 14.8 0.0 0.075 13.5 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|55378948|ref|YP_136798.1| - 0.077 13.3 0.1 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Metallophos_2 PF12850.2 gi|55378949|ref|YP_136799.1| - 2.4e-32 111.9 0.0 2.7e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55378949|ref|YP_136799.1| - 8.7e-06 25.2 2.8 0.0011 18.4 1.9 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase UPF0278 PF08745.6 gi|55378950|ref|YP_136800.1| - 3.4e-86 287.7 0.4 3.8e-86 287.5 0.3 1.0 1 0 0 1 1 1 1 UPF0278 family EcoEI_R_C PF08463.5 gi|55378950|ref|YP_136800.1| - 0.065 13.0 0.5 0.11 12.3 0.3 1.3 1 0 0 1 1 1 0 EcoEI R protein C-terminal CorA PF01544.13 gi|55378950|ref|YP_136800.1| - 0.088 11.8 1.2 0.12 11.4 0.8 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DNA_ligase_A_M PF01068.16 gi|55378951|ref|YP_136801.1| - 3.1e-17 62.6 0.0 4.6e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|55378951|ref|YP_136801.1| - 1.5e-06 28.1 0.0 1.1e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 RNA ligase UvrD-helicase PF00580.16 gi|55378952|ref|YP_136802.1| - 2.5e-25 89.4 0.0 1.2e-11 44.4 0.0 2.5 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|55378952|ref|YP_136802.1| - 4.9e-14 52.5 0.1 2.2e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|55378952|ref|YP_136802.1| - 1.2e-11 44.1 0.1 5.9e-11 41.9 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|55378952|ref|YP_136802.1| - 9.2e-08 32.1 1.0 2.9e-06 27.3 0.3 3.0 2 1 0 2 2 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|55378952|ref|YP_136802.1| - 1.7e-06 27.7 0.0 1.7 8.0 0.0 4.0 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.10 gi|55378952|ref|YP_136802.1| - 0.00049 18.1 0.0 0.00075 17.5 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_30 PF13604.1 gi|55378952|ref|YP_136802.1| - 0.00071 19.1 0.0 0.021 14.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55378952|ref|YP_136802.1| - 0.0016 18.5 0.0 0.49 10.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|55378952|ref|YP_136802.1| - 0.0052 16.2 0.1 0.82 9.0 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|55378952|ref|YP_136802.1| - 0.013 15.1 0.0 0.058 12.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|55378952|ref|YP_136802.1| - 0.05 12.5 0.0 1.2 8.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|55378952|ref|YP_136802.1| - 0.055 13.3 0.0 10 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_12 PF13087.1 gi|55378952|ref|YP_136802.1| - 0.1 11.9 0.0 0.29 10.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain TniQ PF06527.6 gi|55378952|ref|YP_136802.1| - 0.12 12.5 0.2 0.59 10.3 0.1 2.1 2 0 0 2 2 2 0 TniQ DUF1504 PF07399.6 gi|55378953|ref|YP_136803.1| - 0.0058 15.3 1.5 0.0062 15.2 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1504) QueT PF06177.6 gi|55378953|ref|YP_136803.1| - 0.21 11.5 5.0 0.28 11.1 3.5 1.3 1 0 0 1 1 1 0 QueT transporter DUF2269 PF10027.4 gi|55378953|ref|YP_136803.1| - 0.26 11.0 3.0 0.32 10.7 2.1 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) PadR PF03551.9 gi|55378954|ref|YP_136804.1| - 2.6e-08 33.5 0.0 4.9e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PBP PF01161.15 gi|55378955|ref|YP_136805.1| - 7.2e-18 64.8 0.0 8.9e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein COX1 PF00115.15 gi|55378956|ref|YP_136806.1| - 2.5e-46 158.2 49.1 6e-46 156.9 34.1 1.6 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.3 gi|55378956|ref|YP_136806.1| - 0.014 15.5 1.6 0.014 15.5 1.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2871) Abhydrolase_5 PF12695.2 gi|55378957|ref|YP_136807.1| - 2.7e-15 56.3 0.1 4.9e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55378957|ref|YP_136807.1| - 1.6e-14 54.3 0.2 2.6e-14 53.6 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|55378957|ref|YP_136807.1| - 9.9e-10 37.4 0.0 1.7e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.15 gi|55378957|ref|YP_136807.1| - 1.4e-07 31.3 0.0 2.3e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|55378957|ref|YP_136807.1| - 1.3e-06 27.7 0.2 5.9e-06 25.6 0.1 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|55378957|ref|YP_136807.1| - 1.6e-05 24.6 0.0 3.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|55378957|ref|YP_136807.1| - 9.1e-05 22.0 0.1 0.00015 21.2 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|55378957|ref|YP_136807.1| - 0.0036 16.7 0.1 0.01 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative esterase BAAT_C PF08840.6 gi|55378957|ref|YP_136807.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal PAF-AH_p_II PF03403.8 gi|55378957|ref|YP_136807.1| - 0.023 13.0 0.0 3.7 5.7 0.0 2.1 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DLH PF01738.13 gi|55378957|ref|YP_136807.1| - 0.026 13.8 0.0 0.2 10.9 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family VirB8 PF04335.8 gi|55378957|ref|YP_136807.1| - 0.35 10.3 0.0 0.35 10.3 0.0 2.6 3 0 0 3 3 3 0 VirB8 protein Abi PF02517.11 gi|55378957|ref|YP_136807.1| - 6.9 6.8 17.4 2.9e+02 1.6 11.8 2.8 1 1 0 1 1 1 0 CAAX protease self-immunity Glyoxalase PF00903.20 gi|55378959|ref|YP_136809.1| - 6.6e-26 90.7 0.0 1.8e-25 89.3 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|55378959|ref|YP_136809.1| - 6.7e-11 42.7 1.2 2.4e-05 24.8 0.1 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|55378959|ref|YP_136809.1| - 3.1e-08 33.6 0.3 0.00095 19.1 0.0 3.2 1 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTP_transf_2 PF01467.21 gi|55378960|ref|YP_136810.1| - 3.6e-08 33.6 0.4 0.0003 20.8 0.2 2.2 2 0 0 2 2 2 2 Cytidylyltransferase FAD_syn PF06574.7 gi|55378960|ref|YP_136810.1| - 0.03 13.9 0.1 0.051 13.2 0.1 1.4 1 0 0 1 1 1 0 FAD synthetase CbiQ PF02361.11 gi|55378961|ref|YP_136811.1| - 9.6e-28 97.2 8.3 1.3e-27 96.8 5.7 1.1 1 0 0 1 1 1 1 Cobalt transport protein DsrH PF04077.7 gi|55378961|ref|YP_136811.1| - 0.12 12.1 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein PDGLE PF13190.1 gi|55378962|ref|YP_136812.1| - 2.9e-14 52.5 4.4 3.9e-14 52.1 3.1 1.1 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|55378962|ref|YP_136812.1| - 0.0045 16.5 0.8 0.0058 16.1 0.6 1.2 1 0 0 1 1 1 1 Yip1 domain DUF441 PF04284.8 gi|55378962|ref|YP_136812.1| - 0.05 13.4 1.1 0.06 13.2 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF441) Attachment_P66 PF11263.3 gi|55378962|ref|YP_136812.1| - 0.15 11.0 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi attachment protein P66 Transgly_assoc PF04226.8 gi|55378962|ref|YP_136812.1| - 3.3 7.8 10.6 0.62 10.1 2.7 2.5 2 1 1 3 3 3 0 Transglycosylase associated protein CbiM PF01891.11 gi|55378963|ref|YP_136813.1| - 1.3e-63 214.3 19.4 1.4e-63 214.1 13.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region UNC-93 PF05978.11 gi|55378963|ref|YP_136813.1| - 0.65 9.4 6.1 0.36 10.3 2.7 1.7 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 DUF3816 PF12822.2 gi|55378963|ref|YP_136813.1| - 5.5 6.8 17.5 16 5.3 12.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) NikR_C PF08753.6 gi|55378964|ref|YP_136814.1| - 3.1e-26 91.0 7.1 4.2e-26 90.6 4.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|55378964|ref|YP_136814.1| - 0.00027 20.6 0.2 0.00084 19.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RNA_GG_bind PF10258.4 gi|55378964|ref|YP_136814.1| - 0.00054 19.6 0.1 0.00078 19.0 0.0 1.2 1 0 0 1 1 1 1 PHAX RNA-binding domain AAA_26 PF13500.1 gi|55378964|ref|YP_136814.1| - 0.018 14.6 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain Phage_integrase PF00589.17 gi|55378965|ref|YP_136815.1| - 3.2e-10 39.9 0.0 5.1e-09 36.0 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|55378965|ref|YP_136815.1| - 2.7e-07 30.6 0.0 8.1e-07 29.1 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3979 PF13141.1 gi|55378965|ref|YP_136815.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3979) MarR PF01047.17 gi|55378966|ref|YP_136816.1| - 7.9e-05 22.2 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55378966|ref|YP_136816.1| - 9.7e-05 22.0 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55378966|ref|YP_136816.1| - 0.00021 20.6 0.4 0.002 17.5 0.3 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55378966|ref|YP_136816.1| - 0.00022 20.8 0.0 0.00028 20.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|55378966|ref|YP_136816.1| - 0.00025 20.7 0.3 0.00042 19.9 0.2 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|55378966|ref|YP_136816.1| - 0.0037 17.0 0.0 0.0057 16.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.1 gi|55378966|ref|YP_136816.1| - 0.011 15.2 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|55378966|ref|YP_136816.1| - 0.014 15.6 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Arg_repressor PF01316.16 gi|55378966|ref|YP_136816.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain RepL PF05732.6 gi|55378966|ref|YP_136816.1| - 0.017 14.3 0.0 0.035 13.3 0.0 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) F420_ligase PF01996.11 gi|55378966|ref|YP_136816.1| - 0.02 13.9 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Fe_dep_repress PF01325.14 gi|55378966|ref|YP_136816.1| - 0.042 13.7 0.1 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.1 gi|55378966|ref|YP_136816.1| - 0.058 13.4 0.0 0.75 9.9 0.0 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_5 PF01022.15 gi|55378966|ref|YP_136816.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cation_efflux PF01545.16 gi|55378968|ref|YP_136818.1| - 0.027 13.5 1.1 0.037 13.1 0.7 1.2 1 1 0 1 1 1 0 Cation efflux family DUF3185 PF11381.3 gi|55378968|ref|YP_136818.1| - 1.9 8.2 9.6 1.3 8.8 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF4140 PF13600.1 gi|55378972|ref|YP_136822.1| - 0.036 14.4 0.4 0.073 13.5 0.3 1.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) SM-ATX PF14438.1 gi|55378972|ref|YP_136822.1| - 0.082 12.8 0.3 0.16 11.9 0.2 1.6 1 1 0 1 1 1 0 Ataxin 2 SM domain MtrF PF09472.5 gi|55378972|ref|YP_136822.1| - 0.15 11.3 1.3 0.35 10.1 0.9 1.6 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) TrbC PF04956.8 gi|55378973|ref|YP_136823.1| - 0.2 11.6 1.7 15 5.6 0.1 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family AAA_10 PF12846.2 gi|55378975|ref|YP_136825.1| - 0.051 13.0 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain SIR2_2 PF13289.1 gi|55378976|ref|YP_136826.1| - 9.1e-27 93.6 1.5 5e-24 84.7 0.1 2.7 2 0 0 2 2 2 2 SIR2-like domain HJURP_C PF12347.3 gi|55378976|ref|YP_136826.1| - 0.004 16.7 0.2 0.0084 15.6 0.1 1.5 1 0 0 1 1 1 1 Holliday junction regulator protein family C-terminal repeat HHH_5 PF14520.1 gi|55378976|ref|YP_136826.1| - 0.017 15.3 0.0 0.09 12.9 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain HTH_23 PF13384.1 gi|55378977|ref|YP_136827.1| - 0.017 14.7 0.0 0.059 13.0 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|55378977|ref|YP_136827.1| - 0.02 14.8 0.2 0.076 13.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain tRNA_NucTransf2 PF09249.6 gi|55378979|ref|YP_136829.1| - 7e-41 138.6 0.0 1.1e-40 137.9 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|55378979|ref|YP_136829.1| - 2.3e-13 50.2 0.0 5.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|55378980|ref|YP_136830.1| - 1.2e-83 280.9 0.1 1.4e-83 280.7 0.1 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.18 gi|55378981|ref|YP_136831.1| - 1.3e-22 79.5 0.1 3.5e-13 49.3 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|55378981|ref|YP_136831.1| - 3.5e-15 55.8 0.2 1.4e-08 34.7 0.1 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|55378981|ref|YP_136831.1| - 0.0083 16.2 0.4 0.014 15.5 0.3 1.4 1 0 0 1 1 1 1 Kinetochore component CENP-S DUF1931 PF09123.6 gi|55378981|ref|YP_136831.1| - 0.059 13.3 0.3 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) tRNA_anti-codon PF01336.20 gi|55378982|ref|YP_136832.1| - 6e-30 102.9 8.0 3.7e-12 45.9 0.1 4.1 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|55378982|ref|YP_136832.1| - 0.1 12.2 0.2 32 4.2 0.0 3.0 3 0 0 3 3 3 0 Replication factor-A C terminal domain KcnmB2_inactiv PF09303.5 gi|55378984|ref|YP_136834.1| - 0.018 14.8 0.1 0.023 14.4 0.1 1.3 1 0 0 1 1 1 0 KCNMB2, ball and chain domain Epimerase PF01370.16 gi|55378985|ref|YP_136835.1| - 6e-21 74.9 0.0 1.5e-20 73.6 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55378985|ref|YP_136835.1| - 5.2e-14 51.6 0.0 8.7e-14 50.8 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|55378985|ref|YP_136835.1| - 1.2e-12 47.3 0.0 1.5e-11 43.6 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|55378985|ref|YP_136835.1| - 6.9e-11 41.5 0.2 2.7e-07 29.7 0.2 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|55378985|ref|YP_136835.1| - 2.1e-10 40.9 0.0 2.6e-10 40.6 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|55378985|ref|YP_136835.1| - 6.7e-05 22.8 0.2 0.0021 17.9 0.2 2.2 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55378985|ref|YP_136835.1| - 0.0088 15.7 0.0 0.63 9.6 0.0 2.3 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.12 gi|55378985|ref|YP_136835.1| - 0.017 14.0 0.1 0.044 12.6 0.1 1.6 1 1 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|55378985|ref|YP_136835.1| - 0.15 11.2 0.2 0.32 10.2 0.1 1.5 1 1 0 1 1 1 0 NmrA-like family DUF381 PF04038.7 gi|55378986|ref|YP_136836.1| - 6e-22 77.4 0.8 7.7e-22 77.1 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|55378986|ref|YP_136836.1| - 4e-20 70.9 1.8 1e-19 69.6 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|55378986|ref|YP_136836.1| - 0.02 14.4 0.0 0.028 13.9 0.0 1.3 1 1 0 1 1 1 0 Gene 25-like lysozyme UVR PF02151.14 gi|55378986|ref|YP_136836.1| - 0.072 12.6 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 UvrB/uvrC motif DUF4398 PF14346.1 gi|55378988|ref|YP_136838.1| - 0.0026 17.7 2.1 0.0065 16.4 1.5 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4398) Laminin_II PF06009.7 gi|55378988|ref|YP_136838.1| - 0.0093 15.7 0.3 0.049 13.3 0.0 2.0 1 1 1 2 2 2 1 Laminin Domain II TraF_2 PF13729.1 gi|55378988|ref|YP_136838.1| - 0.025 13.3 4.7 0.052 12.3 3.3 1.4 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein Phe_tRNA-synt_N PF02912.13 gi|55378988|ref|YP_136838.1| - 0.047 13.4 0.0 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF1386 PF07138.6 gi|55378988|ref|YP_136838.1| - 0.095 11.8 0.1 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) DUF2938 PF11158.3 gi|55378989|ref|YP_136839.1| - 0.05 12.9 3.2 4.2 6.7 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2938) COX2 PF00116.15 gi|55378990|ref|YP_136840.1| - 1.2e-20 73.5 0.0 2e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|55378990|ref|YP_136840.1| - 0.00021 21.1 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX14 PF14880.1 gi|55378990|ref|YP_136840.1| - 0.04 13.5 2.3 0.061 12.9 0.4 2.1 2 0 0 2 2 2 0 Cytochrome oxidase c assembly COX1 PF00115.15 gi|55378991|ref|YP_136841.1| - 1.2e-133 446.0 63.1 1.2e-133 446.0 43.8 3.2 2 1 2 4 4 4 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|55378991|ref|YP_136841.1| - 1.9e-20 73.4 15.1 1.9e-20 73.4 10.4 3.4 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III Spore_YhaL PF14147.1 gi|55378991|ref|YP_136841.1| - 0.023 14.1 0.6 0.15 11.4 0.0 2.7 2 0 0 2 2 2 0 Sporulation protein YhaL COX4_pro PF03626.9 gi|55378992|ref|YP_136842.1| - 1.6e-10 40.8 7.8 2e-10 40.6 5.4 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF441 PF04284.8 gi|55378992|ref|YP_136842.1| - 0.051 13.4 0.5 0.063 13.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF441) Tmpp129 PF10272.4 gi|55378992|ref|YP_136842.1| - 0.18 10.4 0.4 0.21 10.2 0.3 1.0 1 0 0 1 1 1 0 Putative transmembrane protein precursor LrgA PF03788.9 gi|55378992|ref|YP_136842.1| - 0.24 11.1 2.0 0.43 10.3 1.4 1.5 1 1 0 1 1 1 0 LrgA family KbaA PF14089.1 gi|55378992|ref|YP_136842.1| - 1.5 8.3 5.6 2.6 7.5 3.9 1.6 1 1 0 1 1 1 0 KinB-signalling pathway activation in sporulation OPT PF03169.10 gi|55378993|ref|YP_136843.1| - 0.0025 16.3 0.9 0.0037 15.7 0.4 1.5 1 1 0 1 1 1 1 OPT oligopeptide transporter protein Myc_target_1 PF15179.1 gi|55378993|ref|YP_136843.1| - 0.16 11.5 0.1 0.16 11.5 0.0 1.9 1 1 0 2 2 2 0 Myc target protein 1 DUF4245 PF14030.1 gi|55378993|ref|YP_136843.1| - 0.62 9.7 3.0 1.2 8.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4245) DUF3487 PF11990.3 gi|55378993|ref|YP_136843.1| - 0.87 9.0 8.8 0.21 10.9 2.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) DUF3040 PF11239.3 gi|55378993|ref|YP_136843.1| - 1.1 9.3 12.4 0.29 11.2 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) Tetraspannin PF00335.15 gi|55378993|ref|YP_136843.1| - 1.7 7.8 6.1 23 4.1 4.2 2.2 1 1 0 1 1 1 0 Tetraspanin family MerC PF03203.9 gi|55378993|ref|YP_136843.1| - 1.7 9.0 9.5 0.58 10.5 3.6 2.0 2 0 0 2 2 2 0 MerC mercury resistance protein DUF2530 PF10745.4 gi|55378993|ref|YP_136843.1| - 2.1 8.3 14.9 0.65 10.0 6.5 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2530) ABC_tran PF00005.22 gi|55378994|ref|YP_136844.1| - 6.9e-38 130.0 0.1 1.6e-37 128.8 0.0 1.7 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.18 gi|55378994|ref|YP_136844.1| - 5.1e-34 117.9 0.8 7.1e-34 117.4 0.6 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|55378994|ref|YP_136844.1| - 9.9e-07 28.9 0.1 1.9e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|55378994|ref|YP_136844.1| - 7.2e-05 22.8 0.0 0.0049 16.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55378994|ref|YP_136844.1| - 0.00021 20.5 0.1 0.011 14.9 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|55378994|ref|YP_136844.1| - 0.00022 21.3 0.5 0.0024 17.9 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55378994|ref|YP_136844.1| - 0.00051 20.8 0.4 0.0021 18.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55378994|ref|YP_136844.1| - 0.00052 19.2 0.0 0.0012 18.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|55378994|ref|YP_136844.1| - 0.00063 18.9 0.1 0.0014 17.7 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|55378994|ref|YP_136844.1| - 0.0028 17.1 0.1 0.0085 15.6 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|55378994|ref|YP_136844.1| - 0.0041 17.4 0.0 0.012 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55378994|ref|YP_136844.1| - 0.0051 16.6 0.0 0.015 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|55378994|ref|YP_136844.1| - 0.0051 16.7 0.1 0.19 11.6 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|55378994|ref|YP_136844.1| - 0.025 14.1 1.1 0.086 12.4 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|55378994|ref|YP_136844.1| - 0.027 14.1 0.5 0.23 11.1 0.2 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|55378994|ref|YP_136844.1| - 0.045 14.0 0.0 0.086 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|55378994|ref|YP_136844.1| - 0.052 13.7 0.1 0.44 10.7 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|55378994|ref|YP_136844.1| - 0.061 12.9 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55378994|ref|YP_136844.1| - 0.076 12.4 0.1 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|55378994|ref|YP_136844.1| - 0.08 12.8 0.1 0.48 10.3 0.0 2.2 1 1 1 2 2 2 0 AAA domain O-antigen_lig PF13425.1 gi|55378994|ref|YP_136844.1| - 0.1 12.5 0.2 0.1 12.5 0.2 2.3 3 0 0 3 3 2 0 O-antigen ligase like membrane protein MobB PF03205.9 gi|55378994|ref|YP_136844.1| - 0.12 12.0 0.1 0.25 11.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|55378994|ref|YP_136844.1| - 0.13 11.6 0.2 0.62 9.4 0.2 2.0 1 1 0 1 1 1 0 Guanylate kinase Cuticle_1 PF08140.6 gi|55378994|ref|YP_136844.1| - 0.26 11.1 2.2 9.1 6.1 0.2 2.7 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF192 PF02643.10 gi|55378995|ref|YP_136845.1| - 6.3e-32 109.4 0.0 9.6e-32 108.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2020 PF09449.5 gi|55378995|ref|YP_136845.1| - 0.031 13.9 0.0 0.077 12.6 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2020) DUF1905 PF08922.6 gi|55378995|ref|YP_136845.1| - 0.093 12.3 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) OrfB_Zn_ribbon PF07282.6 gi|55378996|ref|YP_136846.1| - 0.00056 19.5 1.1 0.00064 19.3 0.8 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|55378996|ref|YP_136846.1| - 0.00065 19.4 0.3 0.00071 19.3 0.2 1.0 1 0 0 1 1 1 1 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|55378996|ref|YP_136846.1| - 0.00066 19.5 5.0 0.029 14.3 0.8 2.1 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55378996|ref|YP_136846.1| - 0.0038 16.9 0.2 0.0048 16.6 0.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|55378996|ref|YP_136846.1| - 0.0049 16.7 1.9 0.017 15.0 0.1 2.0 2 0 0 2 2 2 1 C2H2-type zinc finger DZR PF12773.2 gi|55378996|ref|YP_136846.1| - 0.0059 16.4 0.4 0.007 16.1 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2 PF00096.21 gi|55378996|ref|YP_136846.1| - 0.007 16.6 1.3 0.019 15.3 0.1 1.9 2 0 0 2 2 2 1 Zinc finger, C2H2 type PADR1 PF08063.7 gi|55378996|ref|YP_136846.1| - 0.012 14.9 1.3 0.015 14.7 0.9 1.2 1 0 0 1 1 1 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.1 gi|55378996|ref|YP_136846.1| - 0.025 13.7 0.9 1.6 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|55378996|ref|YP_136846.1| - 0.032 13.9 2.7 0.57 9.9 0.2 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-H2C2_2 PF13465.1 gi|55378996|ref|YP_136846.1| - 0.039 14.2 4.4 0.049 13.9 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|55378996|ref|YP_136846.1| - 0.046 13.4 2.9 0.39 10.4 2.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|55378996|ref|YP_136846.1| - 0.063 12.6 4.6 0.074 12.3 3.2 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding C1_1 PF00130.17 gi|55378996|ref|YP_136846.1| - 0.076 12.7 0.1 0.079 12.7 0.1 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|55378996|ref|YP_136846.1| - 0.077 13.3 0.3 1.8 9.0 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger zf-AN1 PF01428.11 gi|55378996|ref|YP_136846.1| - 0.091 12.6 3.3 1.3 8.9 2.4 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Mss51 PF13824.1 gi|55378996|ref|YP_136846.1| - 0.092 12.6 1.1 0.11 12.3 0.8 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_5 PF13719.1 gi|55378996|ref|YP_136846.1| - 0.099 12.2 1.0 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Rep_fac-A_C PF08646.5 gi|55378996|ref|YP_136846.1| - 0.11 12.2 0.2 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_4 PF13717.1 gi|55378996|ref|YP_136846.1| - 0.11 12.1 0.8 3.2 7.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|55378996|ref|YP_136846.1| - 0.11 12.2 3.1 0.13 12.0 0.2 1.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Rubredoxin PF00301.15 gi|55378996|ref|YP_136846.1| - 0.13 12.1 1.2 3.2 7.6 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin DnaJ_CXXCXGXG PF00684.14 gi|55378996|ref|YP_136846.1| - 0.15 12.1 2.2 0.18 11.8 1.5 1.2 1 0 0 1 1 1 0 DnaJ central domain DUF1610 PF07754.6 gi|55378996|ref|YP_136846.1| - 0.17 12.0 0.1 0.17 12.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PHD PF00628.24 gi|55378996|ref|YP_136846.1| - 0.18 11.4 1.3 0.21 11.3 0.9 1.1 1 0 0 1 1 1 0 PHD-finger zf-TFIIB PF13453.1 gi|55378996|ref|YP_136846.1| - 0.23 10.7 2.4 0.32 10.2 1.6 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|55378996|ref|YP_136846.1| - 0.23 11.0 3.5 1.4 8.6 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|55378996|ref|YP_136846.1| - 0.29 10.9 3.0 0.37 10.6 2.1 1.3 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|55378996|ref|YP_136846.1| - 0.66 9.4 2.4 1.1 8.8 1.7 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.14 gi|55378996|ref|YP_136846.1| - 0.97 8.9 4.2 1.6 8.3 0.1 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger ZZ PF00569.12 gi|55378996|ref|YP_136846.1| - 1.1 8.8 3.5 0.96 9.0 0.3 1.9 1 1 0 1 1 1 0 Zinc finger, ZZ type DUF2387 PF09526.5 gi|55378996|ref|YP_136846.1| - 2.4 8.1 4.7 6.2 6.8 3.2 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-IS66 PF13005.2 gi|55378996|ref|YP_136846.1| - 3 7.9 5.1 6.1 6.9 0.3 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 MCM PF00493.18 gi|55378998|ref|YP_136848.1| - 4.3e-108 361.0 0.0 5.7e-108 360.6 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|55378998|ref|YP_136848.1| - 1.7e-11 44.6 1.2 2.6e-11 44.0 0.2 1.8 2 0 0 2 2 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|55378998|ref|YP_136848.1| - 3.5e-10 39.3 0.0 8.9e-06 25.0 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|55378998|ref|YP_136848.1| - 1.1e-09 38.1 0.0 2.7e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|55378998|ref|YP_136848.1| - 0.00015 21.2 0.0 0.00062 19.2 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|55378998|ref|YP_136848.1| - 0.0007 19.6 0.5 0.0085 16.0 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|55378998|ref|YP_136848.1| - 0.0038 17.4 0.0 0.014 15.6 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|55378998|ref|YP_136848.1| - 0.02 15.0 0.3 0.13 12.4 0.0 2.4 2 1 1 3 3 2 0 AAA domain G-alpha PF00503.15 gi|55378998|ref|YP_136848.1| - 0.057 12.1 0.0 0.15 10.6 0.0 1.7 2 0 0 2 2 2 0 G-protein alpha subunit FtsK_SpoIIIE PF01580.13 gi|55378998|ref|YP_136848.1| - 0.058 12.8 0.0 0.2 11.1 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|55378998|ref|YP_136848.1| - 0.067 13.4 0.0 0.42 10.9 0.0 2.4 1 1 0 1 1 1 0 ABC transporter Zn-ribbon_8 PF09723.5 gi|55378998|ref|YP_136848.1| - 0.095 12.6 2.8 0.23 11.4 1.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain AAA_3 PF07726.6 gi|55378998|ref|YP_136848.1| - 0.14 11.7 0.0 0.67 9.5 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|55378998|ref|YP_136848.1| - 0.17 11.5 0.0 0.47 10.0 0.0 1.7 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|55378998|ref|YP_136848.1| - 0.2 11.8 0.0 1.3 9.2 0.0 2.3 3 0 0 3 3 2 0 RNA helicase AAA_17 PF13207.1 gi|55378998|ref|YP_136848.1| - 2.4 8.9 4.9 69 4.2 0.0 4.1 4 1 1 5 5 5 0 AAA domain DUF4065 PF13274.1 gi|55378999|ref|YP_136849.1| - 4.5e-11 43.4 1.3 6.4e-11 42.9 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) GIY-YIG PF01541.19 gi|55379000|ref|YP_136850.1| - 2e-07 31.2 0.5 0.0011 19.2 0.0 2.9 2 1 0 2 2 2 2 GIY-YIG catalytic domain Phage_integrase PF00589.17 gi|55379001|ref|YP_136851.1| - 1.9e-12 47.2 0.0 3.3e-12 46.4 0.0 1.3 1 1 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|55379001|ref|YP_136851.1| - 3.4e-08 33.4 0.0 4.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Integrase HpaP PF09483.5 gi|55379002|ref|YP_136852.1| - 0.04 13.8 0.3 0.058 13.3 0.2 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) HTH_24 PF13412.1 gi|55379002|ref|YP_136852.1| - 0.084 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MazG PF03819.12 gi|55379004|ref|YP_136854.1| - 1e-09 38.2 1.7 1.3e-09 37.8 0.5 1.8 2 1 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.6 gi|55379004|ref|YP_136854.1| - 0.0022 18.1 1.2 0.0029 17.7 0.8 1.2 1 0 0 1 1 1 1 dUTPase PRA-PH PF01503.12 gi|55379004|ref|YP_136854.1| - 0.0028 17.8 0.3 0.0039 17.4 0.2 1.4 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase HHA PF05321.6 gi|55379004|ref|YP_136854.1| - 0.25 11.5 1.6 0.43 10.7 0.3 1.9 2 0 0 2 2 2 0 Haemolysin expression modulating protein DUF2075 PF09848.4 gi|55379005|ref|YP_136855.1| - 3e-104 348.7 0.0 4.1e-104 348.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|55379005|ref|YP_136855.1| - 2.1e-07 30.5 0.0 4.5e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|55379005|ref|YP_136855.1| - 1.3e-06 28.6 0.1 1e-05 25.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|55379005|ref|YP_136855.1| - 2.5e-06 27.4 0.1 0.022 14.6 0.0 2.6 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit AAA PF00004.24 gi|55379005|ref|YP_136855.1| - 6.6e-06 26.3 0.3 4.6e-05 23.6 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|55379005|ref|YP_136855.1| - 0.00025 20.2 0.1 0.00052 19.2 0.1 1.4 1 1 0 1 1 1 1 KaiC GvpD PF07088.6 gi|55379005|ref|YP_136855.1| - 0.00026 19.4 0.0 0.00038 18.9 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_16 PF13191.1 gi|55379005|ref|YP_136855.1| - 0.00046 20.2 0.0 0.0011 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|55379005|ref|YP_136855.1| - 0.00072 19.1 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|55379005|ref|YP_136855.1| - 0.0061 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain Torsin PF06309.6 gi|55379005|ref|YP_136855.1| - 0.0073 16.1 0.0 0.026 14.3 0.0 1.9 2 0 0 2 2 2 1 Torsin IstB_IS21 PF01695.12 gi|55379005|ref|YP_136855.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|55379005|ref|YP_136855.1| - 0.024 14.0 0.1 0.07 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|55379005|ref|YP_136855.1| - 0.026 14.0 0.1 0.068 12.7 0.0 1.6 1 1 1 2 2 2 0 AAA domain TIP49 PF06068.8 gi|55379005|ref|YP_136855.1| - 0.033 12.9 0.0 0.054 12.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|55379005|ref|YP_136855.1| - 0.047 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.13 gi|55379005|ref|YP_136855.1| - 0.056 12.9 0.0 3.9 6.9 0.0 2.7 2 1 1 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.9 gi|55379005|ref|YP_136855.1| - 0.074 12.7 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|55379005|ref|YP_136855.1| - 0.093 12.4 0.1 0.71 9.5 0.0 2.3 1 1 1 2 2 2 0 Archaeal ATPase AAA_17 PF13207.1 gi|55379005|ref|YP_136855.1| - 0.11 13.3 0.9 0.83 10.4 0.2 2.9 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|55379005|ref|YP_136855.1| - 0.12 11.5 0.0 0.3 10.2 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|55379005|ref|YP_136855.1| - 0.16 11.9 0.0 0.44 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain YqjK PF13997.1 gi|55379006|ref|YP_136856.1| - 0.069 13.3 0.4 0.1 12.7 0.3 1.2 1 0 0 1 1 1 0 YqjK-like protein Mo25 PF08569.6 gi|55379006|ref|YP_136856.1| - 0.11 11.4 0.1 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Mo25-like zf-C4H2 PF10146.4 gi|55379006|ref|YP_136856.1| - 0.22 11.5 1.4 0.23 11.4 0.9 1.0 1 0 0 1 1 1 0 Zinc finger-containing protein APG6 PF04111.7 gi|55379006|ref|YP_136856.1| - 0.85 8.6 3.7 0.92 8.4 2.6 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 HEAT_2 PF13646.1 gi|55379008|ref|YP_136858.1| - 0.056 13.7 0.0 0.061 13.6 0.0 1.2 1 0 0 1 1 1 0 HEAT repeats Phage_integrase PF00589.17 gi|55379009|ref|YP_136859.1| - 2.6e-15 56.5 0.0 4.6e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|55379009|ref|YP_136859.1| - 0.039 13.7 0.5 0.088 12.6 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55379009|ref|YP_136859.1| - 0.2 10.8 2.4 0.37 10.0 1.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain PRC PF05239.11 gi|55379011|ref|YP_136861.1| - 0.023 14.5 0.3 0.053 13.3 0.2 1.8 1 1 0 1 1 1 0 PRC-barrel domain HSP20 PF00011.16 gi|55379013|ref|YP_136862.1| - 1.5e-17 63.3 0.0 2.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family FAD-oxidase_C PF02913.14 gi|55379012|ref|YP_136863.1| - 8.4e-63 211.9 0.1 2.1e-62 210.6 0.0 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|55379012|ref|YP_136863.1| - 7.7e-40 135.5 0.1 1.6e-39 134.5 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|55379012|ref|YP_136863.1| - 3.6e-08 33.6 4.4 8.1e-08 32.5 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|55379012|ref|YP_136863.1| - 1.3e-07 31.4 0.0 5.1e-05 23.1 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|55379012|ref|YP_136863.1| - 2e-07 30.9 6.0 4e-07 29.9 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55379012|ref|YP_136863.1| - 3.8e-05 24.0 3.3 0.0001 22.6 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|55379012|ref|YP_136863.1| - 0.00092 18.4 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|55379012|ref|YP_136863.1| - 0.016 15.0 4.0 0.12 12.2 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55379012|ref|YP_136863.1| - 0.034 14.8 1.5 0.42 11.3 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|55379012|ref|YP_136863.1| - 0.087 12.6 9.0 0.073 12.8 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain PP2C_C PF07830.8 gi|55379012|ref|YP_136863.1| - 0.11 12.6 0.1 0.82 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Fer4_7 PF12838.2 gi|55379012|ref|YP_136863.1| - 0.2 12.0 8.5 6.9 7.1 6.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55379012|ref|YP_136863.1| - 0.46 10.1 14.6 0.1 12.2 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|55379012|ref|YP_136863.1| - 0.46 10.7 10.3 0.13 12.5 1.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55379012|ref|YP_136863.1| - 0.5 10.3 8.4 0.3 11.0 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55379012|ref|YP_136863.1| - 1.4 9.5 7.1 0.38 11.3 0.4 3.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain HATPase_c PF02518.21 gi|55379015|ref|YP_136865.1| - 9.2e-12 44.6 0.1 2.5e-11 43.2 0.1 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55379015|ref|YP_136865.1| - 0.0045 16.7 0.0 0.0097 15.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|55379015|ref|YP_136865.1| - 0.041 13.8 0.5 0.11 12.4 0.1 1.8 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain CSD PF00313.17 gi|55379016|ref|YP_136866.1| - 1.7e-20 72.5 0.1 1.8e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|55379016|ref|YP_136866.1| - 0.044 13.5 1.3 0.094 12.4 0.9 1.7 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|55379016|ref|YP_136866.1| - 0.065 12.7 2.6 0.086 12.3 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.17 gi|55379017|ref|YP_136867.1| - 1.2e-20 73.0 0.1 1.3e-20 72.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|55379017|ref|YP_136867.1| - 0.0036 17.0 0.8 0.0051 16.5 0.5 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|55379017|ref|YP_136867.1| - 0.015 14.7 2.6 0.022 14.2 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|55379017|ref|YP_136867.1| - 0.018 14.8 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF DUF429 PF04250.8 gi|55379018|ref|YP_136868.1| - 2.4e-49 167.4 1.4 2.8e-49 167.2 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) zf-HYPF PF07503.7 gi|55379020|ref|YP_136870.1| - 0.011 15.0 0.5 0.011 15.0 0.3 1.9 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.5 gi|55379020|ref|YP_136870.1| - 0.038 13.9 1.2 0.42 10.6 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|55379020|ref|YP_136870.1| - 0.077 13.3 0.9 0.09 13.0 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|55379020|ref|YP_136870.1| - 0.12 12.1 3.8 1.8 8.4 2.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|55379020|ref|YP_136870.1| - 0.17 11.6 0.8 0.18 11.5 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|55379020|ref|YP_136870.1| - 0.18 11.5 2.3 10 5.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Sgf11 PF08209.6 gi|55379020|ref|YP_136870.1| - 0.38 10.1 3.6 3 7.2 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-IS66 PF13005.2 gi|55379020|ref|YP_136870.1| - 0.39 10.7 2.6 0.49 10.4 0.4 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_3 PF14369.1 gi|55379020|ref|YP_136870.1| - 1.3 9.0 4.7 4.3 7.4 3.3 1.8 1 1 0 1 1 1 0 zinc-finger Rubredoxin PF00301.15 gi|55379020|ref|YP_136870.1| - 1.5 8.7 5.6 4.3 7.3 3.9 1.8 1 1 0 1 1 1 0 Rubredoxin NTP_transferase PF00483.18 gi|55379021|ref|YP_136871.1| - 6.7e-37 127.1 0.0 8e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55379021|ref|YP_136871.1| - 6.2e-16 58.8 0.1 7.3e-16 58.6 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|55379021|ref|YP_136871.1| - 2.6e-05 23.8 0.0 4.5e-05 23.0 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Metallophos PF00149.23 gi|55379021|ref|YP_136871.1| - 0.059 12.7 0.0 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase Glycos_transf_2 PF00535.21 gi|55379021|ref|YP_136871.1| - 0.09 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 BPD_transp_1 PF00528.17 gi|55379023|ref|YP_136873.1| - 2.7e-13 49.8 18.1 2.7e-13 49.8 12.5 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55379024|ref|YP_136874.1| - 5.6e-14 52.0 17.3 5.6e-14 52.0 12.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|55379025|ref|YP_136875.1| - 1.9e-29 103.2 9.0 2.7e-29 102.7 6.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55379025|ref|YP_136875.1| - 2.6e-18 66.8 9.2 4.5e-18 66.0 6.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55379025|ref|YP_136875.1| - 0.015 15.2 0.5 0.043 13.8 0.4 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Alpha-amylase PF00128.19 gi|55379026|ref|YP_136876.1| - 3.5e-54 184.3 0.0 5.2e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|55379026|ref|YP_136876.1| - 1.5e-06 28.2 0.0 6.2e-06 26.2 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.5 gi|55379026|ref|YP_136876.1| - 0.02 14.3 0.7 0.069 12.6 0.0 2.3 3 0 0 3 3 3 0 Beta-galactosidase C-terminal domain Alpha-amylase_C PF02806.13 gi|55379026|ref|YP_136876.1| - 0.023 14.8 0.0 0.18 11.9 0.0 2.5 2 0 0 2 2 2 0 Alpha amylase, C-terminal all-beta domain ABC_tran PF00005.22 gi|55379027|ref|YP_136877.1| - 6.2e-33 113.9 0.0 1.1e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55379027|ref|YP_136877.1| - 1.6e-11 43.9 0.4 2.5e-10 40.2 0.1 2.8 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|55379027|ref|YP_136877.1| - 3.7e-09 36.9 0.0 5.9e-05 23.1 0.0 2.5 2 1 1 3 3 2 2 AAA domain TOBE PF03459.12 gi|55379027|ref|YP_136877.1| - 3e-08 33.6 0.1 2.1e-07 30.9 0.0 2.6 2 1 0 2 2 1 1 TOBE domain SMC_N PF02463.14 gi|55379027|ref|YP_136877.1| - 0.00032 20.0 0.2 0.0019 17.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|55379027|ref|YP_136877.1| - 0.0044 17.1 0.2 0.0094 16.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55379027|ref|YP_136877.1| - 0.0054 16.7 0.1 0.0087 16.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|55379027|ref|YP_136877.1| - 0.01 15.2 0.1 0.021 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|55379027|ref|YP_136877.1| - 0.013 15.0 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55379027|ref|YP_136877.1| - 0.019 14.1 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|55379027|ref|YP_136877.1| - 0.027 15.2 0.0 0.066 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55379027|ref|YP_136877.1| - 0.037 13.8 0.4 0.066 13.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|55379027|ref|YP_136877.1| - 0.051 13.7 0.0 0.18 12.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|55379027|ref|YP_136877.1| - 0.058 12.0 0.0 0.086 11.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|55379027|ref|YP_136877.1| - 0.058 13.8 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|55379027|ref|YP_136877.1| - 0.072 13.3 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|55379027|ref|YP_136877.1| - 0.12 12.5 0.0 1 9.5 0.0 2.2 2 0 0 2 2 2 0 RNA helicase MobB PF03205.9 gi|55379027|ref|YP_136877.1| - 0.13 11.9 0.1 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|55379027|ref|YP_136877.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|55379027|ref|YP_136877.1| - 0.18 10.6 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|55379027|ref|YP_136877.1| - 0.19 12.0 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Prenyltrans_1 PF13243.1 gi|55379028|ref|YP_136878.1| - 0.0052 16.7 1.6 0.29 11.1 0.1 2.9 2 1 1 3 3 3 2 Prenyltransferase-like Regulator_TrmB PF11495.3 gi|55379029|ref|YP_136879.1| - 2.2e-68 229.7 0.1 3.4e-68 229.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|55379029|ref|YP_136879.1| - 2.3e-16 59.2 0.0 4.6e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379029|ref|YP_136879.1| - 0.00044 19.8 0.0 0.0019 17.7 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|55379029|ref|YP_136879.1| - 0.0057 16.3 0.0 0.018 14.7 0.0 1.9 1 1 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|55379029|ref|YP_136879.1| - 0.0079 16.2 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|55379029|ref|YP_136879.1| - 0.008 15.7 0.0 0.029 13.9 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|55379029|ref|YP_136879.1| - 0.023 14.3 0.0 0.085 12.5 0.0 2.1 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|55379029|ref|YP_136879.1| - 0.036 13.4 0.0 0.12 11.8 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|55379029|ref|YP_136879.1| - 0.05 13.2 0.4 0.24 11.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_29 PF13551.1 gi|55379029|ref|YP_136879.1| - 0.13 12.3 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|55379029|ref|YP_136879.1| - 0.17 12.0 0.0 0.72 10.0 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain DUF1628 PF07790.6 gi|55379030|ref|YP_136880.1| - 2.9e-20 72.7 3.2 3.1e-20 72.6 1.1 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) tRNA_anti-like PF12869.2 gi|55379030|ref|YP_136880.1| - 0.12 11.8 1.4 0.74 9.2 1.0 1.9 1 1 0 1 1 1 0 tRNA_anti-like Herpes_US9 PF06072.6 gi|55379030|ref|YP_136880.1| - 0.23 11.3 1.0 0.37 10.6 0.7 1.2 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 GST_N_2 PF13409.1 gi|55379032|ref|YP_136881.1| - 3.7e-21 74.8 0.3 4.7e-20 71.3 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|55379032|ref|YP_136881.1| - 5.4e-14 51.8 0.5 1e-13 50.9 0.3 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|55379032|ref|YP_136881.1| - 1.1e-08 35.4 0.0 2.3e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|55379032|ref|YP_136881.1| - 3.7e-08 33.2 0.1 1.1e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|55379032|ref|YP_136881.1| - 5e-06 26.6 0.1 0.00022 21.4 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Ribosomal_L16 PF00252.13 gi|55379031|ref|YP_136882.1| - 1.5e-29 102.4 0.1 1.7e-29 102.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Usp PF00582.21 gi|55379034|ref|YP_136884.1| - 5.3e-21 75.2 0.0 5.7e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family RimK PF08443.6 gi|55379035|ref|YP_136885.1| - 1.3e-26 93.2 0.0 1.8e-26 92.7 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|55379035|ref|YP_136885.1| - 4.7e-15 55.7 0.1 6.7e-15 55.2 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|55379035|ref|YP_136885.1| - 6e-10 38.5 0.0 8.6e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|55379035|ref|YP_136885.1| - 1.3e-07 31.6 0.0 2e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55379035|ref|YP_136885.1| - 2.3e-05 23.2 0.0 4e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|55379035|ref|YP_136885.1| - 3.8e-05 23.1 0.0 0.00023 20.5 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|55379035|ref|YP_136885.1| - 5.8e-05 22.3 0.0 0.0018 17.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp TTL PF03133.10 gi|55379035|ref|YP_136885.1| - 0.00089 18.2 0.0 0.015 14.2 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATP-grasp PF02222.17 gi|55379035|ref|YP_136885.1| - 0.0014 18.0 0.0 0.002 17.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|55379035|ref|YP_136885.1| - 0.029 13.6 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HSP20 PF00011.16 gi|55379036|ref|YP_136886.1| - 8.4e-11 41.6 0.1 2.4e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|55379036|ref|YP_136886.1| - 1e-06 28.5 1.8 1.2e-06 28.2 1.3 1.1 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|55379036|ref|YP_136886.1| - 0.028 13.8 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 DUF3184 PF11380.3 gi|55379036|ref|YP_136886.1| - 0.13 10.2 0.0 0.14 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3184) Gp_dh_C PF02800.15 gi|55379037|ref|YP_136887.1| - 5.9e-59 198.0 0.0 8.1e-59 197.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|55379037|ref|YP_136887.1| - 3.9e-48 163.2 0.0 6.1e-48 162.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|55379037|ref|YP_136887.1| - 0.0047 16.8 0.1 0.014 15.2 0.0 1.9 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|55379037|ref|YP_136887.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PGK PF00162.14 gi|55379038|ref|YP_136888.1| - 5e-107 357.7 0.1 5.9e-107 357.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lum_binding PF00677.12 gi|55379040|ref|YP_136890.1| - 2.5e-37 126.6 0.0 1.2e-19 69.9 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|55379041|ref|YP_136891.1| - 3e-42 143.9 14.1 3e-42 143.9 9.7 1.9 2 1 1 3 3 3 1 Protease prsW family YbgT_YccB PF08173.6 gi|55379041|ref|YP_136891.1| - 0.65 9.8 3.0 3.7 7.4 2.1 2.4 1 0 0 1 1 1 0 Membrane bound YbgT-like protein PepSY_TM_2 PF13703.1 gi|55379041|ref|YP_136891.1| - 1 9.5 7.3 15 5.8 1.0 3.3 3 0 0 3 3 3 0 PepSY-associated TM helix SNO PF01174.14 gi|55379042|ref|YP_136892.1| - 7.8e-53 178.9 0.0 8.5e-53 178.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|55379042|ref|YP_136892.1| - 1.4e-09 37.7 0.0 2.9e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|55379042|ref|YP_136892.1| - 1.3e-05 24.6 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|55379042|ref|YP_136892.1| - 0.00043 20.0 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|55379042|ref|YP_136892.1| - 0.0023 17.4 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|55379042|ref|YP_136892.1| - 0.018 14.3 0.1 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Aconitase PF00330.15 gi|55379042|ref|YP_136892.1| - 0.018 13.5 0.0 0.025 13.0 0.0 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) PRA-PH PF01503.12 gi|55379043|ref|YP_136893.1| - 2.3e-14 53.3 1.9 2.6e-14 53.2 1.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|55379043|ref|YP_136893.1| - 0.00029 20.7 2.9 0.00029 20.7 2.0 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Response_reg PF00072.19 gi|55379044|ref|YP_136894.1| - 9.8e-22 77.0 0.0 4.7e-21 74.8 0.0 2.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55379044|ref|YP_136894.1| - 1.2e-20 73.2 1.9 3.2e-19 68.6 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55379044|ref|YP_136894.1| - 2.4e-12 46.6 0.5 2.4e-12 46.6 0.3 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|55379044|ref|YP_136894.1| - 5.8e-08 32.8 0.2 1.6e-07 31.4 0.1 1.8 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|55379044|ref|YP_136894.1| - 2.6e-06 27.9 2.0 7e-06 26.6 1.4 1.8 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|55379044|ref|YP_136894.1| - 5.3e-06 26.4 0.2 4.6e-05 23.4 0.0 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.19 gi|55379044|ref|YP_136894.1| - 1.5e-05 24.7 0.0 4.1e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|55379044|ref|YP_136894.1| - 1.7e-05 25.0 0.0 7.5e-05 23.0 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|55379044|ref|YP_136894.1| - 4.9e-05 22.9 0.1 0.0045 16.6 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55379044|ref|YP_136894.1| - 6.4e-05 22.6 0.0 0.00036 20.2 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|55379044|ref|YP_136894.1| - 0.00068 19.6 1.4 0.0043 17.0 0.1 2.9 3 0 0 3 3 3 1 PAS fold DUF3846 PF12957.2 gi|55379044|ref|YP_136894.1| - 0.1 12.3 1.8 1.3 8.8 0.0 3.3 3 2 0 3 3 3 0 Domain of unknown function (DUF3846) HATPase_c_5 PF14501.1 gi|55379044|ref|YP_136894.1| - 0.14 11.9 0.0 1.4 8.6 0.0 2.6 2 1 0 2 2 2 0 GHKL domain ASCH PF04266.9 gi|55379045|ref|YP_136895.1| - 0.0089 16.4 0.1 0.016 15.5 0.0 1.4 2 0 0 2 2 2 1 ASCH domain NOG1 PF06858.9 gi|55379046|ref|YP_136896.1| - 4.1e-19 68.2 0.0 7.2e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|55379046|ref|YP_136896.1| - 1.5e-18 66.8 0.0 2.7e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|55379046|ref|YP_136896.1| - 7.7e-11 41.5 0.0 1.4e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|55379046|ref|YP_136896.1| - 2e-06 28.3 0.0 3.1e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|55379046|ref|YP_136896.1| - 2.6e-05 24.1 0.4 0.74 9.6 0.0 3.2 2 1 1 3 3 3 2 Dynamin family Ras PF00071.17 gi|55379046|ref|YP_136896.1| - 0.014 14.8 0.0 0.059 12.7 0.0 2.0 1 1 0 1 1 1 0 Ras family AAA_16 PF13191.1 gi|55379046|ref|YP_136896.1| - 0.022 14.7 0.0 0.077 12.9 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AIG1 PF04548.11 gi|55379046|ref|YP_136896.1| - 0.03 13.4 0.0 0.055 12.5 0.0 1.5 1 1 0 1 1 1 0 AIG1 family DUF258 PF03193.11 gi|55379046|ref|YP_136896.1| - 0.032 13.4 0.0 0.11 11.6 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 SIMPL PF04402.9 gi|55379047|ref|YP_136897.1| - 6.6e-37 127.4 16.0 7.8e-37 127.1 11.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4330 PF14221.1 gi|55379047|ref|YP_136897.1| - 0.024 14.4 1.3 0.083 12.7 0.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) Rotamase_2 PF13145.1 gi|55379047|ref|YP_136897.1| - 0.26 11.9 3.9 16 6.1 2.7 2.2 1 1 0 1 1 1 0 PPIC-type PPIASE domain DUF2690 PF10901.3 gi|55379047|ref|YP_136897.1| - 0.3 11.0 3.6 0.84 9.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2690) DUF389 PF04087.9 gi|55379048|ref|YP_136898.1| - 7.6e-37 126.3 19.5 7.6e-37 126.3 13.5 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF389) MMR_HSR1 PF01926.18 gi|55379049|ref|YP_136899.1| - 3.9e-16 59.0 0.0 6.8e-16 58.2 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|55379049|ref|YP_136899.1| - 1.6e-12 46.9 0.0 2.4e-11 43.1 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|55379049|ref|YP_136899.1| - 2e-08 33.8 0.0 1.9e-05 24.2 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|55379049|ref|YP_136899.1| - 0.0015 18.8 0.0 0.0023 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|55379049|ref|YP_136899.1| - 0.0021 17.7 0.0 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.11 gi|55379049|ref|YP_136899.1| - 0.004 16.2 0.0 0.0091 15.1 0.0 1.5 1 1 1 2 2 2 1 AIG1 family Ras PF00071.17 gi|55379049|ref|YP_136899.1| - 0.0077 15.6 0.0 0.022 14.1 0.0 1.7 2 0 0 2 2 2 1 Ras family PduV-EutP PF10662.4 gi|55379049|ref|YP_136899.1| - 0.01 15.3 0.0 0.19 11.1 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|55379049|ref|YP_136899.1| - 0.011 14.8 0.1 0.022 13.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|55379049|ref|YP_136899.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain TIP49 PF06068.8 gi|55379049|ref|YP_136899.1| - 0.021 13.5 0.3 0.034 12.8 0.2 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Miro PF08477.8 gi|55379049|ref|YP_136899.1| - 0.021 15.2 0.0 0.037 14.5 0.0 1.6 1 1 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|55379049|ref|YP_136899.1| - 0.025 13.3 0.1 5 5.8 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Dynamin_N PF00350.18 gi|55379049|ref|YP_136899.1| - 0.025 14.3 0.1 0.14 11.9 0.0 1.9 1 1 1 2 2 2 0 Dynamin family AAA_17 PF13207.1 gi|55379049|ref|YP_136899.1| - 0.026 15.3 0.0 0.067 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|55379049|ref|YP_136899.1| - 0.027 14.0 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|55379049|ref|YP_136899.1| - 0.03 14.6 0.1 0.041 14.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|55379049|ref|YP_136899.1| - 0.085 13.0 0.1 0.46 10.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|55379049|ref|YP_136899.1| - 0.086 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Lipase_GDSL_2 PF13472.1 gi|55379050|ref|YP_136900.1| - 0.052 13.6 0.1 6.5 6.8 0.0 2.4 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Metallophos PF00149.23 gi|55379051|ref|YP_136901.1| - 8.6e-08 31.8 0.9 1.6e-07 30.9 0.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|55379051|ref|YP_136901.1| - 0.00031 20.6 0.1 0.0011 18.8 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TAT_signal PF10518.4 gi|55379051|ref|YP_136901.1| - 0.1 12.6 5.8 0.23 11.5 4.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CARDB PF07705.6 gi|55379052|ref|YP_136902.1| - 8.3e-05 22.5 2.2 8.3e-05 22.5 1.5 3.7 2 2 1 3 3 3 1 CARDB Spore_YtfJ PF09579.5 gi|55379052|ref|YP_136902.1| - 3.6 7.5 10.5 7.2 6.5 5.3 2.7 2 1 0 2 2 2 0 Sporulation protein YtfJ (Spore_YtfJ) Phage_integrase PF00589.17 gi|55379053|ref|YP_136903.1| - 5.6e-09 35.9 0.0 2.3e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|55379053|ref|YP_136903.1| - 2.1e-05 24.5 3.3 2.5e-05 24.3 0.4 2.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|55379053|ref|YP_136903.1| - 0.058 13.7 0.0 0.19 12.0 0.0 1.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain HTH_20 PF12840.2 gi|55379054|ref|YP_136904.1| - 2.6e-05 23.9 0.0 6.5e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.1 gi|55379054|ref|YP_136904.1| - 3.3e-05 23.8 0.1 0.00031 20.7 0.0 1.9 1 1 1 2 2 2 1 Mrr N-terminal domain HTH_27 PF13463.1 gi|55379054|ref|YP_136904.1| - 6.1e-05 23.2 0.1 9.2e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|55379054|ref|YP_136904.1| - 0.0024 17.6 0.0 0.0042 16.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF2161 PF09929.4 gi|55379054|ref|YP_136904.1| - 0.0042 17.0 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2161) DUF4095 PF13338.1 gi|55379054|ref|YP_136904.1| - 0.011 15.8 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) HemN_C PF06969.11 gi|55379054|ref|YP_136904.1| - 0.015 15.3 0.1 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain Ribosomal_S19e PF01090.14 gi|55379054|ref|YP_136904.1| - 0.03 13.7 0.0 0.044 13.2 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S19e HTH_24 PF13412.1 gi|55379054|ref|YP_136904.1| - 0.047 13.0 0.1 0.21 11.0 0.1 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4254 PF14063.1 gi|55379054|ref|YP_136904.1| - 0.14 11.7 0.2 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4254) AAA_22 PF13401.1 gi|55379056|ref|YP_136906.1| - 5.8e-10 39.4 0.0 2.1e-09 37.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|55379056|ref|YP_136906.1| - 2.7e-09 37.2 7.7 2.2e-08 34.3 5.2 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|55379056|ref|YP_136906.1| - 3.7e-06 27.1 0.0 1.7e-05 25.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55379056|ref|YP_136906.1| - 0.001 18.8 0.1 0.037 13.7 0.0 2.7 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|55379056|ref|YP_136906.1| - 0.0018 17.9 0.2 1.9 8.2 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|55379056|ref|YP_136906.1| - 0.0041 16.1 0.3 0.098 11.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DEAD PF00270.24 gi|55379056|ref|YP_136906.1| - 0.0082 15.6 0.1 1.2 8.6 0.0 2.5 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_14 PF13173.1 gi|55379056|ref|YP_136906.1| - 0.0084 16.0 0.0 0.031 14.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|55379056|ref|YP_136906.1| - 0.011 15.4 0.4 0.036 13.8 0.3 1.9 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|55379056|ref|YP_136906.1| - 0.014 15.1 0.0 0.042 13.5 0.0 1.9 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|55379056|ref|YP_136906.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|55379056|ref|YP_136906.1| - 0.017 15.3 0.4 0.13 12.5 0.3 2.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55379056|ref|YP_136906.1| - 0.028 14.2 4.2 0.032 14.1 0.3 2.8 2 2 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|55379056|ref|YP_136906.1| - 0.031 13.4 0.1 0.063 12.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|55379056|ref|YP_136906.1| - 0.033 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase GvpD PF07088.6 gi|55379056|ref|YP_136906.1| - 0.054 11.7 0.4 0.13 10.5 0.0 1.7 2 0 0 2 2 2 0 GvpD gas vesicle protein Viral_helicase1 PF01443.13 gi|55379056|ref|YP_136906.1| - 0.064 12.7 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.17 gi|55379056|ref|YP_136906.1| - 0.088 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|55379056|ref|YP_136906.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55379056|ref|YP_136906.1| - 0.18 12.5 0.1 0.18 12.5 0.1 2.9 2 1 0 2 2 2 0 AAA domain Cas_Cas02710 PF09670.5 gi|55379057|ref|YP_136907.1| - 9.2e-05 21.2 0.2 0.00015 20.5 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.6 gi|55379057|ref|YP_136907.1| - 0.00041 18.8 0.0 0.00058 18.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Fe-ADH_2 PF13685.1 gi|55379057|ref|YP_136907.1| - 0.0088 15.3 0.1 0.017 14.3 0.1 1.4 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DUF4496 PF14908.1 gi|55379057|ref|YP_136907.1| - 0.12 12.2 0.0 0.59 10.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4496) HTH_24 PF13412.1 gi|55379058|ref|YP_136908.1| - 0.01 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding EVE PF01878.13 gi|55379060|ref|YP_136910.1| - 0.0049 16.8 0.0 0.055 13.4 0.0 2.5 2 0 0 2 2 2 1 EVE domain AAA_5 PF07728.9 gi|55379062|ref|YP_136912.1| - 1.8e-16 60.1 0.0 3.1e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|55379062|ref|YP_136912.1| - 1.1e-06 28.7 0.0 3.4e-06 27.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379062|ref|YP_136912.1| - 9e-06 25.9 0.0 2.7e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|55379062|ref|YP_136912.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.7 gi|55379062|ref|YP_136912.1| - 0.058 12.4 0.0 1.1 8.2 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Y_phosphatase3C PF13348.1 gi|55379062|ref|YP_136912.1| - 0.064 13.3 0.1 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Tyrosine phosphatase family C-terminal region AAA_24 PF13479.1 gi|55379062|ref|YP_136912.1| - 0.099 12.2 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|55379062|ref|YP_136912.1| - 0.11 11.9 0.0 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|55379062|ref|YP_136912.1| - 0.13 12.0 0.0 0.93 9.2 0.0 2.4 3 0 0 3 3 3 0 Part of AAA domain PhoH PF02562.11 gi|55379062|ref|YP_136912.1| - 0.13 11.5 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|55379062|ref|YP_136912.1| - 0.18 11.2 0.0 0.35 10.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein McrBC PF10117.4 gi|55379063|ref|YP_136913.1| - 2.5e-21 75.9 0.0 3e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DDE_Tnp_1 PF01609.16 gi|55379064|ref|YP_136914.1| - 5.8e-27 94.6 0.5 7.5e-27 94.2 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|55379064|ref|YP_136914.1| - 0.039 13.6 0.0 0.65 9.7 0.0 2.2 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|55379064|ref|YP_136914.1| - 0.075 12.0 0.1 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 McrBC PF10117.4 gi|55379065|ref|YP_136915.1| - 5.6e-09 35.3 0.0 6.7e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component Bac_rhamnosid_N PF08531.5 gi|55379065|ref|YP_136915.1| - 0.054 13.0 0.1 0.086 12.3 0.1 1.4 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain Ribosomal_L23 PF00276.15 gi|55379069|ref|YP_136919.1| - 0.088 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L23 TrbC PF04956.8 gi|55379070|ref|YP_136920.1| - 0.25 11.3 1.8 17 5.5 0.1 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF4381 PF14316.1 gi|55379071|ref|YP_136921.1| - 0.92 9.6 3.8 1.8 8.6 2.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) AAA_10 PF12846.2 gi|55379073|ref|YP_136923.1| - 0.046 13.1 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MarR_2 PF12802.2 gi|55379074|ref|YP_136924.1| - 0.0051 16.4 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_15 PF12324.3 gi|55379074|ref|YP_136924.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Phasin_2 PF09361.5 gi|55379074|ref|YP_136924.1| - 0.089 12.8 0.6 0.16 12.0 0.4 1.4 1 0 0 1 1 1 0 Phasin protein Mis14 PF08641.7 gi|55379074|ref|YP_136924.1| - 0.093 12.7 0.9 0.23 11.5 0.6 1.6 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Ribosomal_S10 PF00338.17 gi|55379075|ref|YP_136925.1| - 2.4e-28 97.8 0.0 2.6e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|55379076|ref|YP_136926.1| - 9.5e-60 201.2 0.0 1.3e-59 200.8 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|55379076|ref|YP_136926.1| - 2.2e-30 104.7 0.1 8.9e-30 102.7 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|55379076|ref|YP_136926.1| - 1e-17 64.0 2.7 2.4e-17 62.8 0.7 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|55379076|ref|YP_136926.1| - 9.5e-08 32.0 0.0 1.9e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|55379076|ref|YP_136926.1| - 4.1e-06 27.2 0.1 0.0002 21.8 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|55379076|ref|YP_136926.1| - 9.7e-05 21.9 0.1 0.00032 20.2 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|55379076|ref|YP_136926.1| - 0.0025 16.9 0.0 0.041 13.0 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|55379076|ref|YP_136926.1| - 0.0053 16.5 0.1 3.2 7.5 0.0 2.5 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.5 gi|55379076|ref|YP_136926.1| - 0.0072 15.5 0.0 0.4 9.8 0.0 2.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|55379076|ref|YP_136926.1| - 0.015 14.5 0.1 0.37 10.0 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B CbiA PF01656.18 gi|55379076|ref|YP_136926.1| - 0.055 12.8 0.1 0.13 11.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Septin PF00735.13 gi|55379076|ref|YP_136926.1| - 0.12 11.3 0.0 0.27 10.2 0.0 1.5 1 1 0 1 1 1 0 Septin Tic20 PF09685.5 gi|55379077|ref|YP_136927.1| - 3.8e-07 30.0 7.4 6.5e-07 29.3 5.1 1.3 1 1 0 1 1 1 1 Tic20-like protein DUF2933 PF11666.3 gi|55379077|ref|YP_136927.1| - 6.7 6.3 9.9 0.56 9.7 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2933) Homoserine_dh PF00742.14 gi|55379078|ref|YP_136928.1| - 3.6e-50 170.1 0.2 5e-50 169.6 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|55379078|ref|YP_136928.1| - 8.4e-08 32.0 0.3 1.9e-07 30.9 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|55379078|ref|YP_136928.1| - 4.2e-07 30.3 0.8 8.5e-07 29.3 0.2 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|55379078|ref|YP_136928.1| - 0.00011 22.3 1.9 0.00029 20.8 1.3 1.8 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|55379078|ref|YP_136928.1| - 0.0021 17.7 0.9 0.0045 16.6 0.6 1.7 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|55379078|ref|YP_136928.1| - 0.0074 16.8 0.1 0.015 15.8 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|55379078|ref|YP_136928.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|55379078|ref|YP_136928.1| - 0.023 14.7 0.1 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.11 gi|55379078|ref|YP_136928.1| - 0.032 13.6 0.0 0.057 12.8 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|55379078|ref|YP_136928.1| - 0.039 13.7 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|55379078|ref|YP_136928.1| - 0.06 12.7 0.1 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|55379078|ref|YP_136928.1| - 0.07 13.5 0.2 0.18 12.2 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|55379078|ref|YP_136928.1| - 0.071 13.5 0.5 0.29 11.6 0.1 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|55379078|ref|YP_136928.1| - 0.082 12.9 0.5 0.22 11.5 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|55379078|ref|YP_136928.1| - 0.083 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|55379078|ref|YP_136928.1| - 0.15 11.5 0.7 0.27 10.7 0.2 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ACT PF01842.20 gi|55379079|ref|YP_136929.1| - 0.00045 19.6 1.2 0.076 12.5 0.0 2.9 1 1 2 3 3 3 2 ACT domain Sigma70_r1_1 PF03979.9 gi|55379079|ref|YP_136929.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 Adeno_PX PF05829.7 gi|55379081|ref|YP_136931.1| - 0.007 15.8 1.1 0.018 14.5 0.7 1.7 1 0 0 1 1 1 1 Adenovirus late L2 mu core protein (Protein X) HTH_31 PF13560.1 gi|55379081|ref|YP_136931.1| - 0.2 11.8 8.2 0.45 10.7 0.2 4.0 4 0 0 4 4 4 0 Helix-turn-helix domain GTP_EFTU PF00009.22 gi|55379082|ref|YP_136932.1| - 3.4e-61 205.9 0.3 5.6e-61 205.2 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|55379082|ref|YP_136932.1| - 6e-24 83.9 0.0 1.5e-23 82.6 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|55379082|ref|YP_136932.1| - 8e-23 80.1 0.0 1.1e-21 76.5 0.0 2.8 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|55379082|ref|YP_136932.1| - 1.1e-21 76.3 2.0 1.2e-21 76.3 0.2 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|55379082|ref|YP_136932.1| - 9.4e-17 60.9 1.9 5.6e-16 58.4 0.8 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|55379082|ref|YP_136932.1| - 1.2e-05 25.1 0.0 2.8e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|55379082|ref|YP_136932.1| - 0.064 12.4 0.2 0.18 11.0 0.1 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|55379082|ref|YP_136932.1| - 0.13 11.6 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 Ras family Cys_Met_Meta_PP PF01053.15 gi|55379083|ref|YP_136933.1| - 5.6e-142 472.5 0.0 6.5e-142 472.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|55379083|ref|YP_136933.1| - 1.5e-11 43.9 0.4 2.4e-11 43.2 0.3 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|55379083|ref|YP_136933.1| - 2.3e-05 23.7 0.2 8.9e-05 21.7 0.1 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|55379083|ref|YP_136933.1| - 3.8e-05 22.7 0.0 5.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|55379083|ref|YP_136933.1| - 0.00054 18.8 0.0 0.00091 18.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|55379083|ref|YP_136933.1| - 0.01 14.1 0.0 0.051 11.8 0.0 1.9 1 1 0 1 1 1 0 Methionine gamma-lyase PAS_3 PF08447.6 gi|55379085|ref|YP_136935.1| - 1.2e-50 169.5 1.1 2.9e-13 49.7 0.0 4.8 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|55379085|ref|YP_136935.1| - 2.3e-41 140.3 4.9 3.7e-16 59.3 0.0 5.8 6 1 1 7 7 6 4 PAS domain PAS_4 PF08448.5 gi|55379085|ref|YP_136935.1| - 1.5e-34 118.3 8.5 2.6e-15 56.3 0.0 4.7 4 0 0 4 4 4 4 PAS fold Response_reg PF00072.19 gi|55379085|ref|YP_136935.1| - 8.3e-21 74.0 0.2 2.6e-20 72.4 0.0 2.0 2 0 0 2 2 1 1 Response regulator receiver domain PAS PF00989.19 gi|55379085|ref|YP_136935.1| - 2.5e-20 72.3 0.8 1.1e-08 34.8 0.0 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|55379085|ref|YP_136935.1| - 4.7e-18 64.9 0.1 1.3e-17 63.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|55379085|ref|YP_136935.1| - 5.1e-10 39.1 1.7 5.1e-10 39.1 1.2 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|55379085|ref|YP_136935.1| - 2.1e-06 27.3 0.6 0.036 13.9 0.0 4.5 4 0 0 4 4 4 2 PAS domain GAF_3 PF13492.1 gi|55379085|ref|YP_136935.1| - 2.3e-06 27.7 0.0 8.8e-06 25.8 0.0 2.1 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|55379085|ref|YP_136935.1| - 3.5e-05 23.8 0.0 0.00047 20.1 0.0 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|55379085|ref|YP_136935.1| - 7e-05 22.6 0.2 0.00025 20.8 0.2 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55379085|ref|YP_136935.1| - 0.00031 20.4 0.0 0.00094 18.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SieB PF14163.1 gi|55379085|ref|YP_136935.1| - 0.057 12.9 0.2 0.15 11.5 0.1 1.7 1 0 0 1 1 1 0 Superinfection exclusion protein B Fes1 PF08609.5 gi|55379085|ref|YP_136935.1| - 1.6 9.2 4.3 1.1 9.7 0.3 2.9 3 1 0 3 3 2 0 Nucleotide exchange factor Fes1 Pup PF05639.6 gi|55379085|ref|YP_136935.1| - 5.7 7.5 8.5 2 8.9 0.0 3.6 4 0 0 4 4 2 0 Pup-like protein CbiQ PF02361.11 gi|55379086|ref|YP_136936.1| - 4.8e-15 55.7 5.4 1.2e-14 54.3 3.8 1.6 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|55379087|ref|YP_136937.1| - 3.6e-30 105.0 0.0 4.7e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379087|ref|YP_136937.1| - 4.3e-09 36.7 0.0 0.0011 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|55379087|ref|YP_136937.1| - 8.4e-07 28.4 0.1 1.6e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|55379087|ref|YP_136937.1| - 1.3e-06 27.8 0.0 2.9e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55379087|ref|YP_136937.1| - 3.5e-06 27.1 0.9 7.8e-06 25.9 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|55379087|ref|YP_136937.1| - 6.5e-05 22.6 0.0 0.00015 21.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|55379087|ref|YP_136937.1| - 0.00016 21.2 0.0 0.022 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|55379087|ref|YP_136937.1| - 0.0002 21.7 0.0 0.00026 21.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55379087|ref|YP_136937.1| - 0.00075 19.3 0.2 0.0015 18.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55379087|ref|YP_136937.1| - 0.00094 19.3 0.0 0.0013 18.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55379087|ref|YP_136937.1| - 0.0012 19.1 0.0 0.16 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|55379087|ref|YP_136937.1| - 0.0025 17.4 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.16 gi|55379087|ref|YP_136937.1| - 0.0029 16.7 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|55379087|ref|YP_136937.1| - 0.0033 17.3 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|55379087|ref|YP_136937.1| - 0.0038 16.7 0.1 0.0071 15.8 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|55379087|ref|YP_136937.1| - 0.0041 16.5 0.3 0.011 15.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379087|ref|YP_136937.1| - 0.0043 17.2 0.0 0.0082 16.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|55379087|ref|YP_136937.1| - 0.0046 15.4 0.0 0.028 12.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|55379087|ref|YP_136937.1| - 0.005 16.5 0.1 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|55379087|ref|YP_136937.1| - 0.0053 15.8 0.0 0.032 13.3 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|55379087|ref|YP_136937.1| - 0.0071 17.1 0.1 0.017 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|55379087|ref|YP_136937.1| - 0.0076 15.9 3.0 0.036 13.7 0.1 2.5 2 1 0 2 2 2 1 Part of AAA domain SbcCD_C PF13558.1 gi|55379087|ref|YP_136937.1| - 0.008 16.0 0.1 0.075 12.9 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|55379087|ref|YP_136937.1| - 0.013 14.9 0.1 0.028 13.8 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.1 gi|55379087|ref|YP_136937.1| - 0.021 13.9 0.0 4.1 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|55379087|ref|YP_136937.1| - 0.025 14.1 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|55379087|ref|YP_136937.1| - 0.031 13.8 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|55379087|ref|YP_136937.1| - 0.042 13.4 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|55379087|ref|YP_136937.1| - 0.046 12.9 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|55379087|ref|YP_136937.1| - 0.064 13.1 0.0 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain Polyoma_lg_T_C PF06431.6 gi|55379087|ref|YP_136937.1| - 0.067 11.8 0.0 0.087 11.4 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus PduV-EutP PF10662.4 gi|55379087|ref|YP_136937.1| - 0.067 12.6 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_PrkA PF08298.6 gi|55379087|ref|YP_136937.1| - 0.07 11.8 0.0 0.098 11.3 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain ATP_bind_1 PF03029.12 gi|55379087|ref|YP_136937.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein T2SE PF00437.15 gi|55379087|ref|YP_136937.1| - 0.12 11.2 0.6 0.3 9.9 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF1707 PF08044.6 gi|55379087|ref|YP_136937.1| - 0.19 11.4 6.4 0.24 11.1 0.4 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF1707) G-alpha PF00503.15 gi|55379087|ref|YP_136937.1| - 0.22 10.1 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BioY PF02632.9 gi|55379088|ref|YP_136938.1| - 5.7e-32 110.4 23.9 5.7e-32 110.4 16.6 1.5 2 0 0 2 2 2 1 BioY family ECF-ribofla_trS PF07155.7 gi|55379088|ref|YP_136938.1| - 0.73 9.5 17.5 16 5.1 12.1 2.5 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component GSDH PF07995.6 gi|55379089|ref|YP_136939.1| - 4.2e-86 289.0 0.1 5.6e-86 288.6 0.1 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|55379089|ref|YP_136939.1| - 0.11 12.5 0.7 0.48 10.5 0.5 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S7 PF00177.16 gi|55379090|ref|YP_136940.1| - 7.5e-38 129.4 1.1 9.2e-38 129.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RE_LlaJI PF09563.5 gi|55379090|ref|YP_136940.1| - 0.073 11.7 0.1 0.095 11.3 0.0 1.1 1 0 0 1 1 1 0 LlaJI restriction endonuclease Ribosom_S12_S23 PF00164.20 gi|55379091|ref|YP_136941.1| - 3.9e-41 139.2 0.2 4.5e-41 139.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MCPsignal PF00015.16 gi|55379092|ref|YP_136942.1| - 4.7e-52 176.6 46.8 1.2e-50 172.0 21.3 4.3 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55379092|ref|YP_136942.1| - 3.2e-14 52.8 6.1 7.3e-11 42.0 0.1 7.0 7 1 1 8 8 7 2 HAMP domain Laminin_II PF06009.7 gi|55379092|ref|YP_136942.1| - 2.5e-05 24.0 27.0 0.065 12.9 0.3 5.6 3 2 2 5 5 5 3 Laminin Domain II DUF948 PF06103.6 gi|55379092|ref|YP_136942.1| - 0.00019 21.2 0.6 0.00019 21.2 0.4 7.5 6 2 0 7 7 7 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|55379092|ref|YP_136942.1| - 0.0078 16.3 25.1 0.38 10.9 0.2 5.8 3 2 1 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|55379092|ref|YP_136942.1| - 0.021 14.3 17.5 3.5e+02 0.6 0.0 5.1 2 1 0 2 2 1 0 IncA protein Prominin PF05478.6 gi|55379092|ref|YP_136942.1| - 0.034 11.6 14.8 0.028 11.9 4.1 2.6 1 1 1 2 2 2 0 Prominin DUF2365 PF10157.4 gi|55379092|ref|YP_136942.1| - 0.061 13.2 14.9 0.05 13.4 1.0 4.4 2 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2365) COG2 PF06148.6 gi|55379092|ref|YP_136942.1| - 0.072 12.9 19.4 0.24 11.2 0.3 5.8 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.6 gi|55379092|ref|YP_136942.1| - 0.085 11.5 18.3 1 7.9 0.2 3.9 1 1 3 4 4 4 0 Spc7 kinetochore protein APG17 PF04108.7 gi|55379092|ref|YP_136942.1| - 0.14 10.9 28.3 0.33 9.7 2.4 4.5 2 1 3 5 5 5 0 Autophagy protein Apg17 Hemerythrin PF01814.18 gi|55379092|ref|YP_136942.1| - 0.16 12.1 15.3 0.26 11.4 0.3 4.9 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain PhageMin_Tail PF10145.4 gi|55379092|ref|YP_136942.1| - 0.34 10.5 35.7 0.093 12.3 12.7 3.8 1 1 3 4 4 4 0 Phage-related minor tail protein RPW8 PF05659.6 gi|55379092|ref|YP_136942.1| - 0.35 10.4 4.4 12 5.4 0.1 4.1 4 1 0 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Seryl_tRNA_N PF02403.17 gi|55379092|ref|YP_136942.1| - 0.54 10.3 26.8 0.23 11.4 2.3 5.2 2 1 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF1395 PF07160.7 gi|55379092|ref|YP_136942.1| - 0.81 9.1 10.6 1.4 8.3 0.6 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1395) Fib_alpha PF08702.5 gi|55379092|ref|YP_136942.1| - 1.4 9.0 15.9 2.2 8.3 0.4 4.4 2 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Syntaxin PF00804.20 gi|55379092|ref|YP_136942.1| - 2 8.6 30.6 2.6 8.2 1.8 6.0 1 1 4 5 5 5 0 Syntaxin V_ATPase_I PF01496.14 gi|55379092|ref|YP_136942.1| - 2.6 5.8 17.9 0.73 7.6 2.8 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Tweety PF04906.8 gi|55379092|ref|YP_136942.1| - 4 5.7 11.0 4 5.7 0.8 3.3 2 1 2 4 4 4 0 Tweety DUF1351 PF07083.6 gi|55379092|ref|YP_136942.1| - 4.5 6.8 14.2 1.8 8.1 0.8 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1351) CENP-F_leu_zip PF10473.4 gi|55379092|ref|YP_136942.1| - 5.8 6.7 26.4 0.034 14.0 0.7 4.9 2 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cauli_AT PF03233.8 gi|55379092|ref|YP_136942.1| - 8.1 6.1 10.8 5.2 6.7 0.1 4.1 2 2 2 4 4 4 0 Aphid transmission protein KH_2 PF07650.12 gi|55379093|ref|YP_136943.1| - 2.4e-16 59.0 0.2 4.7e-10 38.8 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|55379093|ref|YP_136943.1| - 1e-09 37.9 0.1 6.5e-07 28.9 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|55379093|ref|YP_136943.1| - 2.7e-09 36.6 0.1 6.3e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|55379093|ref|YP_136943.1| - 1.7e-05 24.3 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 2 KH domain DUF2984 PF11203.3 gi|55379093|ref|YP_136943.1| - 0.41 10.7 2.2 0.81 9.8 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2984) RNA_pol_Rpb1_5 PF04998.12 gi|55379094|ref|YP_136944.1| - 4.2e-48 164.0 0.1 5.1e-48 163.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1386 PF07138.6 gi|55379094|ref|YP_136944.1| - 0.04 13.0 0.1 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) DUF4355 PF14265.1 gi|55379094|ref|YP_136944.1| - 0.062 13.2 2.7 9.2 6.2 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|55379095|ref|YP_136945.1| - 1.4e-88 297.4 0.0 2.2e-88 296.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|55379095|ref|YP_136945.1| - 2.2e-65 219.6 0.1 3.8e-65 218.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|55379095|ref|YP_136945.1| - 3.7e-33 113.4 0.0 8.7e-33 112.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|55379095|ref|YP_136945.1| - 1.6e-28 99.7 0.0 3.2e-28 98.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|55379095|ref|YP_136945.1| - 3.7e-25 88.4 0.0 6.4e-25 87.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|55379095|ref|YP_136945.1| - 0.00042 20.0 0.1 0.0012 18.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix RNA_pol_Rpb2_6 PF00562.23 gi|55379096|ref|YP_136946.1| - 6.4e-122 407.0 0.0 2.3e-121 405.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|55379096|ref|YP_136946.1| - 2.8e-29 101.2 0.2 5e-29 100.3 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|55379096|ref|YP_136946.1| - 1.9e-25 88.4 0.5 4.2e-25 87.3 0.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|55379096|ref|YP_136946.1| - 1.6e-09 37.5 1.8 3.8e-09 36.3 1.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DZR PF12773.2 gi|55379096|ref|YP_136946.1| - 0.011 15.4 0.5 0.02 14.6 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|55379096|ref|YP_136946.1| - 0.052 13.2 1.3 0.11 12.2 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|55379096|ref|YP_136946.1| - 0.18 11.6 0.7 0.35 10.6 0.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.6 gi|55379096|ref|YP_136946.1| - 1.1 8.8 3.1 0.87 9.1 0.9 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_pol_Rpb2_1 PF04563.10 gi|55379097|ref|YP_136947.1| - 1e-53 181.2 0.0 1.2e-53 181.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|55379097|ref|YP_136947.1| - 2e-27 95.8 0.1 3.5e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|55379097|ref|YP_136947.1| - 6.5e-23 80.2 0.0 1.3e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|55379098|ref|YP_136948.1| - 2.2e-24 84.8 1.1 2.5e-24 84.6 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|55379098|ref|YP_136948.1| - 0.0071 16.0 0.8 0.051 13.3 0.5 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) Spectrin PF00435.16 gi|55379099|ref|YP_136949.1| - 0.0084 16.3 0.5 0.083 13.1 0.1 2.2 2 0 0 2 2 2 1 Spectrin repeat ATG16 PF08614.6 gi|55379099|ref|YP_136949.1| - 0.036 13.8 2.1 0.11 12.3 0.2 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) HEPN PF05168.9 gi|55379099|ref|YP_136949.1| - 0.037 13.9 0.6 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 HEPN domain GreA_GreB_N PF03449.10 gi|55379099|ref|YP_136949.1| - 0.1 12.6 1.7 9 6.4 0.1 2.4 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal DUF4140 PF13600.1 gi|55379099|ref|YP_136949.1| - 0.21 12.0 2.7 0.32 11.4 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PP-binding_2 PF14573.1 gi|55379099|ref|YP_136949.1| - 0.28 11.2 3.4 0.65 10.0 0.5 2.6 2 1 0 2 2 2 0 Acyl-carrier DivIC PF04977.10 gi|55379099|ref|YP_136949.1| - 0.38 10.2 3.8 0.39 10.2 0.6 2.1 2 0 0 2 2 2 0 Septum formation initiator HTH_24 PF13412.1 gi|55379100|ref|YP_136950.1| - 6.2e-07 28.7 0.0 1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|55379100|ref|YP_136950.1| - 5.2e-05 22.8 0.0 7.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|55379100|ref|YP_136950.1| - 0.001 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|55379100|ref|YP_136950.1| - 0.005 16.4 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|55379100|ref|YP_136950.1| - 0.0075 15.9 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|55379100|ref|YP_136950.1| - 0.011 15.3 0.0 0.029 14.0 0.0 1.6 2 0 0 2 2 2 0 MarR family GntR PF00392.16 gi|55379100|ref|YP_136950.1| - 0.019 14.3 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|55379100|ref|YP_136950.1| - 0.021 14.3 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.5 gi|55379100|ref|YP_136950.1| - 0.042 13.5 0.3 0.12 12.1 0.1 1.9 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|55379100|ref|YP_136950.1| - 0.047 13.8 0.0 0.16 12.1 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator HTH_27 PF13463.1 gi|55379100|ref|YP_136950.1| - 0.098 12.9 0.0 0.37 11.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55379100|ref|YP_136950.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Metallophos_2 PF12850.2 gi|55379101|ref|YP_136951.1| - 2.6e-23 82.6 0.2 2.9e-23 82.4 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain F420_ligase PF01996.11 gi|55379102|ref|YP_136952.1| - 3.3e-68 229.1 0.2 3.8e-68 228.9 0.2 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|55379103|ref|YP_136953.1| - 1.4e-59 201.7 14.0 1.8e-59 201.3 9.7 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Beta_elim_lyase PF01212.16 gi|55379104|ref|YP_136954.1| - 8.1e-69 231.9 0.1 1.2e-68 231.3 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Methyltransf_11 PF08241.7 gi|55379105|ref|YP_136955.1| - 2e-22 79.4 0.0 3.3e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379105|ref|YP_136955.1| - 2.1e-17 63.1 0.0 2.8e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379105|ref|YP_136955.1| - 6.7e-14 52.0 0.0 1.2e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379105|ref|YP_136955.1| - 1.1e-12 47.9 0.0 1.6e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379105|ref|YP_136955.1| - 3e-12 47.0 0.0 7.1e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55379105|ref|YP_136955.1| - 3.7e-10 40.1 0.0 5.7e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55379105|ref|YP_136955.1| - 6.4e-10 38.5 0.0 8.7e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|55379105|ref|YP_136955.1| - 1.3e-06 28.3 0.2 3.7e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|55379105|ref|YP_136955.1| - 9.5e-05 21.2 0.0 0.00013 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|55379105|ref|YP_136955.1| - 0.00024 20.5 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|55379105|ref|YP_136955.1| - 0.0031 16.6 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|55379105|ref|YP_136955.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.12 gi|55379105|ref|YP_136955.1| - 0.074 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin N6_N4_Mtase PF01555.13 gi|55379105|ref|YP_136955.1| - 0.15 11.5 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 DNA methylase TF_Zn_Ribbon PF08271.7 gi|55379106|ref|YP_136956.1| - 0.041 13.2 1.1 0.75 9.1 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|55379106|ref|YP_136956.1| - 0.11 12.3 2.0 0.19 11.5 1.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|55379106|ref|YP_136956.1| - 0.27 10.9 1.5 0.92 9.2 1.0 1.8 1 1 0 1 1 1 0 Nudix N-terminal GSu_C4xC__C2xCH PF09698.5 gi|55379106|ref|YP_136956.1| - 5.4 7.2 6.3 37 4.5 0.0 2.3 2 1 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) AAA_3 PF07726.6 gi|55379107|ref|YP_136957.1| - 1.3e-61 205.9 0.2 2.1e-61 205.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55379107|ref|YP_136957.1| - 4.3e-14 52.4 0.0 7.3e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|55379107|ref|YP_136957.1| - 2.3e-08 33.2 0.0 2.9e-06 26.3 0.0 2.2 1 1 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|55379107|ref|YP_136957.1| - 1.1e-06 28.0 0.3 3.3e-05 23.1 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|55379107|ref|YP_136957.1| - 1.9e-06 28.1 0.0 5.3e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|55379107|ref|YP_136957.1| - 1.6e-05 24.4 0.0 0.003 17.0 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|55379107|ref|YP_136957.1| - 0.00027 20.0 0.0 0.0015 17.6 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|55379107|ref|YP_136957.1| - 0.019 15.1 0.0 0.053 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF58 PF01882.13 gi|55379108|ref|YP_136958.1| - 1.2e-17 63.8 0.7 2.8e-17 62.6 0.5 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|55379109|ref|YP_136959.1| - 1.5e-25 89.6 0.1 4.9e-25 87.9 0.0 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|55379109|ref|YP_136959.1| - 1.6e-05 24.6 0.0 6.3e-05 22.7 0.0 2.0 1 0 0 1 1 1 1 Transglutaminase-like superfamily SUI1 PF01253.17 gi|55379110|ref|YP_136960.1| - 5e-25 87.1 0.0 5.7e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|55379110|ref|YP_136960.1| - 0.018 15.2 0.0 0.023 14.8 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|55379110|ref|YP_136960.1| - 0.071 12.3 0.6 0.085 12.0 0.4 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|55379110|ref|YP_136960.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) CARDB PF07705.6 gi|55379111|ref|YP_136961.1| - 9e-09 35.3 5.3 0.00024 21.1 0.3 3.2 2 0 0 2 2 2 2 CARDB Peptidase_MA_2 PF13485.1 gi|55379111|ref|YP_136961.1| - 8.9e-06 25.7 1.7 1.9e-05 24.6 1.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily PKD PF00801.15 gi|55379111|ref|YP_136961.1| - 0.0018 17.9 12.2 0.013 15.2 0.3 5.1 2 2 1 3 3 3 1 PKD domain PhnJ PF06007.6 gi|55379111|ref|YP_136961.1| - 0.014 14.2 0.3 0.41 9.3 0.1 2.3 2 1 0 2 2 2 0 Phosphonate metabolism protein PhnJ A2M PF00207.17 gi|55379111|ref|YP_136961.1| - 0.024 14.2 0.1 1.7 8.2 0.0 3.0 2 0 0 2 2 2 0 Alpha-2-macroglobulin family EamA PF00892.15 gi|55379112|ref|YP_136962.1| - 1.9e-15 57.0 23.3 5.8e-09 36.0 5.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|55379112|ref|YP_136962.1| - 0.0032 17.6 24.3 0.069 13.3 4.7 2.8 2 1 0 2 2 2 2 Multidrug resistance efflux transporter Phos_pyr_kin PF08543.7 gi|55379113|ref|YP_136963.1| - 1.1e-81 273.7 6.1 1.5e-81 273.1 4.3 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|55379113|ref|YP_136963.1| - 2e-43 147.7 0.1 3.3e-43 146.9 0.1 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|55379113|ref|YP_136963.1| - 1.6e-08 34.0 3.7 2.3e-08 33.5 2.5 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DSBA PF01323.15 gi|55379114|ref|YP_136964.1| - 4.1e-39 134.1 0.0 4.6e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|55379114|ref|YP_136964.1| - 1.5e-09 38.1 0.1 1.7e-07 31.3 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55379114|ref|YP_136964.1| - 9.7e-07 28.9 0.1 1.1e-05 25.5 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.1 gi|55379114|ref|YP_136964.1| - 0.094 12.2 0.0 0.34 10.4 0.0 1.9 3 0 0 3 3 3 0 Thioredoxin 2-Hacid_dh_C PF02826.14 gi|55379115|ref|YP_136965.1| - 5e-54 182.1 0.0 6.9e-54 181.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|55379115|ref|YP_136965.1| - 5.3e-08 32.4 0.1 7e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|55379115|ref|YP_136965.1| - 2e-05 24.4 0.1 3.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|55379115|ref|YP_136965.1| - 5.5e-05 23.5 0.0 0.00014 22.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|55379115|ref|YP_136965.1| - 0.0084 16.1 0.3 0.023 14.6 0.2 1.8 1 1 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|55379115|ref|YP_136965.1| - 0.0096 15.5 0.1 0.019 14.6 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|55379115|ref|YP_136965.1| - 0.016 15.0 0.5 0.061 13.1 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|55379115|ref|YP_136965.1| - 0.024 13.9 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|55379115|ref|YP_136965.1| - 0.025 14.8 0.1 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_3 PF03447.11 gi|55379115|ref|YP_136965.1| - 1.3 9.4 5.8 0.74 10.2 0.4 2.7 3 1 0 3 3 3 0 Homoserine dehydrogenase, NAD binding domain TauE PF01925.14 gi|55379117|ref|YP_136967.1| - 2.4e-31 109.0 19.1 2.4e-31 109.0 13.2 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.21 gi|55379118|ref|YP_136968.1| - 1.2e-31 109.7 0.8 1.4e-31 109.5 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.8 gi|55379119|ref|YP_136969.1| - 1.9e-05 24.4 13.8 3.6e-05 23.5 9.6 1.4 1 1 0 1 1 1 1 HPP family GPDPase_memb PF10110.4 gi|55379120|ref|YP_136970.1| - 3.7e-06 26.4 0.7 3.7e-06 26.4 0.5 2.0 2 0 0 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.6 gi|55379120|ref|YP_136970.1| - 0.00047 19.9 4.3 0.00047 19.9 3.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF975) UPF0259 PF06790.6 gi|55379120|ref|YP_136970.1| - 0.0042 16.5 3.0 0.0042 16.5 2.1 1.9 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0259) NfeD PF01957.13 gi|55379120|ref|YP_136970.1| - 0.0051 16.9 0.2 0.0051 16.9 0.1 3.0 2 1 1 3 3 3 1 NfeD-like C-terminal, partner-binding Thioredoxin PF00085.15 gi|55379121|ref|YP_136971.1| - 6.9e-12 44.9 0.0 8.2e-12 44.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55379121|ref|YP_136971.1| - 8.2e-06 25.9 0.0 0.00053 20.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|55379121|ref|YP_136971.1| - 0.00042 20.0 0.0 0.00056 19.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.5 gi|55379121|ref|YP_136971.1| - 0.025 14.1 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 Redoxin HyaE PF07449.6 gi|55379121|ref|YP_136971.1| - 0.054 13.3 0.3 0.36 10.7 0.2 1.9 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|55379121|ref|YP_136971.1| - 0.12 12.6 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Mac PF12464.3 gi|55379122|ref|YP_136972.1| - 2.8e-22 78.4 0.1 1.4e-21 76.2 0.0 1.9 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|55379122|ref|YP_136972.1| - 5.5e-13 47.7 16.8 1.1e-10 40.4 3.8 3.8 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55379122|ref|YP_136972.1| - 9.7e-12 44.2 20.3 1.8e-10 40.1 2.7 4.1 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF460 PF04312.8 gi|55379123|ref|YP_136973.1| - 1.5e-49 167.1 1.2 4.3e-49 165.5 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF460) ADIP PF11559.3 gi|55379123|ref|YP_136973.1| - 0.011 15.6 20.2 0.023 14.6 7.5 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Atg14 PF10186.4 gi|55379123|ref|YP_136973.1| - 0.064 12.2 13.1 0.15 11.0 9.1 1.6 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_13 PF13166.1 gi|55379123|ref|YP_136973.1| - 0.084 11.3 8.9 0.13 10.6 6.1 1.2 1 0 0 1 1 1 0 AAA domain COG5 PF10392.4 gi|55379123|ref|YP_136973.1| - 0.21 11.5 4.7 0.26 11.2 2.5 1.7 1 1 0 1 1 1 0 Golgi transport complex subunit 5 BLOC1_2 PF10046.4 gi|55379123|ref|YP_136973.1| - 0.4 10.8 7.4 7.4 6.7 1.7 2.8 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|55379123|ref|YP_136973.1| - 0.49 9.5 16.1 1.1 8.4 11.2 1.6 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|55379123|ref|YP_136973.1| - 0.49 8.1 9.3 0.85 7.3 6.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|55379123|ref|YP_136973.1| - 0.66 9.5 21.4 9.4 5.7 7.2 2.3 1 1 1 2 2 2 0 IncA protein TMF_DNA_bd PF12329.3 gi|55379123|ref|YP_136973.1| - 0.94 9.3 21.5 0.068 12.9 1.0 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding FUSC PF04632.7 gi|55379123|ref|YP_136973.1| - 1.7 6.9 3.6 3.9 5.7 2.5 1.5 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF904 PF06005.7 gi|55379123|ref|YP_136973.1| - 1.8 8.9 15.2 0.53 10.6 1.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) LMBR1 PF04791.11 gi|55379123|ref|YP_136973.1| - 1.9 6.9 3.6 2.7 6.4 2.5 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein SlyX PF04102.7 gi|55379123|ref|YP_136973.1| - 4 7.8 9.8 2.8 8.3 1.1 3.0 1 1 1 2 2 2 0 SlyX TMPIT PF07851.8 gi|55379123|ref|YP_136973.1| - 5.5 5.9 5.0 8.1 5.4 3.2 1.4 1 1 0 1 1 1 0 TMPIT-like protein DivIC PF04977.10 gi|55379123|ref|YP_136973.1| - 5.6 6.5 17.3 3 7.4 3.6 3.2 1 1 2 3 3 3 0 Septum formation initiator NPV_P10 PF05531.7 gi|55379123|ref|YP_136973.1| - 7.8 6.8 8.0 5.5 7.3 0.4 3.0 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein HATPase_c PF02518.21 gi|55379124|ref|YP_136974.1| - 5.5e-19 67.9 0.1 3.4e-18 65.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55379124|ref|YP_136974.1| - 1.5e-14 53.9 1.4 2e-14 53.5 0.1 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|55379124|ref|YP_136974.1| - 4.8e-13 48.8 0.1 1.7e-12 47.1 0.0 1.9 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|55379124|ref|YP_136974.1| - 9.2e-13 48.4 0.0 2.2e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|55379124|ref|YP_136974.1| - 1.4e-11 44.2 3.8 1.4e-11 44.2 1.2 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|55379124|ref|YP_136974.1| - 1.2e-05 25.3 0.0 3.3e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.2 gi|55379124|ref|YP_136974.1| - 6e-05 23.0 0.1 0.00025 21.0 0.1 2.2 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|55379124|ref|YP_136974.1| - 0.00015 21.4 0.0 0.00029 20.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55379124|ref|YP_136974.1| - 0.0057 16.4 0.1 0.024 14.4 0.1 2.1 1 0 0 1 1 1 1 PAS domain PAS_5 PF07310.8 gi|55379124|ref|YP_136974.1| - 0.095 12.2 0.0 0.2 11.1 0.0 1.6 1 1 0 1 1 1 0 PAS domain HTH_Tnp_Mu_1 PF02316.11 gi|55379124|ref|YP_136974.1| - 0.11 12.2 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Mu DNA-binding domain DUF4418 PF14387.1 gi|55379125|ref|YP_136975.1| - 0.62 9.8 6.0 0.71 9.6 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) SCP2 PF02036.12 gi|55379126|ref|YP_136976.1| - 2e-11 44.1 0.0 3.3e-11 43.3 0.0 1.4 1 1 0 1 1 1 1 SCP-2 sterol transfer family ABC_tran PF00005.22 gi|55379127|ref|YP_136977.1| - 1.3e-30 106.4 0.0 1.9e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379127|ref|YP_136977.1| - 1.3e-12 48.3 0.0 2.4e-05 24.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55379127|ref|YP_136977.1| - 2.3e-05 24.4 0.1 0.00013 22.0 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|55379127|ref|YP_136977.1| - 0.00056 19.1 0.0 0.032 13.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|55379127|ref|YP_136977.1| - 0.0016 17.6 0.0 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|55379127|ref|YP_136977.1| - 0.0016 18.8 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55379127|ref|YP_136977.1| - 0.0019 17.7 0.1 0.0034 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|55379127|ref|YP_136977.1| - 0.0026 17.8 0.1 0.012 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379127|ref|YP_136977.1| - 0.0042 17.2 0.1 0.57 10.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|55379127|ref|YP_136977.1| - 0.011 14.7 0.0 0.21 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|55379127|ref|YP_136977.1| - 0.017 14.5 0.4 0.026 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55379127|ref|YP_136977.1| - 0.019 14.5 0.1 0.053 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|55379127|ref|YP_136977.1| - 0.063 12.9 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|55379127|ref|YP_136977.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55379127|ref|YP_136977.1| - 0.076 12.4 0.0 0.74 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|55379127|ref|YP_136977.1| - 0.13 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain V ABC_tran PF00005.22 gi|55379128|ref|YP_136978.1| - 1.9e-30 105.9 0.0 2.5e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379128|ref|YP_136978.1| - 6.3e-13 49.3 0.1 3.4e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|55379128|ref|YP_136978.1| - 3.3e-09 36.1 0.2 6.8e-09 35.2 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|55379128|ref|YP_136978.1| - 0.00013 21.3 0.3 0.0018 17.5 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55379128|ref|YP_136978.1| - 0.0002 20.8 0.1 0.00045 19.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55379128|ref|YP_136978.1| - 0.00072 19.9 0.3 0.00072 19.9 0.2 1.5 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|55379128|ref|YP_136978.1| - 0.0053 15.9 0.0 0.0084 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|55379128|ref|YP_136978.1| - 0.04 13.8 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|55379128|ref|YP_136978.1| - 0.043 12.4 0.3 3.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|55379128|ref|YP_136978.1| - 0.044 13.7 0.0 0.093 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.11 gi|55379129|ref|YP_136979.1| - 2.4e-45 154.5 34.6 2.4e-45 154.5 24.0 1.9 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|55379129|ref|YP_136979.1| - 0.025 14.0 0.1 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 BPD_transp_2 PF02653.11 gi|55379130|ref|YP_136980.1| - 8.9e-45 152.7 37.3 1e-44 152.5 25.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Trp_oprn_chp PF09534.5 gi|55379130|ref|YP_136980.1| - 1.9 8.0 19.4 0.092 12.3 2.3 2.7 2 1 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Peripla_BP_6 PF13458.1 gi|55379131|ref|YP_136981.1| - 1.8e-42 145.9 6.1 2.6e-42 145.4 4.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|55379131|ref|YP_136981.1| - 3.4e-25 88.5 0.1 4.7e-25 88.1 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|55379131|ref|YP_136981.1| - 1.4e-09 37.1 2.9 2.2e-08 33.2 2.0 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|55379131|ref|YP_136981.1| - 0.007 16.2 1.5 0.016 15.1 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pro_racemase PF05544.6 gi|55379132|ref|YP_136982.1| - 1.9e-75 253.6 2.6 2.4e-75 253.3 1.8 1.0 1 0 0 1 1 1 1 Proline racemase DAP_epimerase PF01678.14 gi|55379132|ref|YP_136982.1| - 4.7e-07 29.7 2.2 0.00013 21.8 0.0 2.6 2 1 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|55379132|ref|YP_136982.1| - 0.00011 21.4 0.0 0.0002 20.6 0.0 1.3 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_dh PF01619.13 gi|55379133|ref|YP_136983.1| - 1e-37 129.8 0.0 1.8e-37 129.0 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.7 gi|55379134|ref|YP_136984.1| - 3.1e-16 58.6 0.1 4.8e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|55379134|ref|YP_136984.1| - 0.00018 20.8 1.1 0.00024 20.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|55379134|ref|YP_136984.1| - 0.00074 18.9 2.3 0.011 15.2 1.6 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|55379134|ref|YP_136984.1| - 0.0064 16.0 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|55379134|ref|YP_136984.1| - 0.0077 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_11 PF08279.7 gi|55379134|ref|YP_136984.1| - 0.0092 15.6 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain Phage_antitermQ PF06530.7 gi|55379134|ref|YP_136984.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q TetR_N PF00440.18 gi|55379134|ref|YP_136984.1| - 0.014 15.0 0.0 0.063 12.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|55379134|ref|YP_136984.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|55379134|ref|YP_136984.1| - 0.039 13.3 0.1 0.087 12.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|55379134|ref|YP_136984.1| - 0.052 13.3 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|55379134|ref|YP_136984.1| - 0.059 13.0 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|55379134|ref|YP_136984.1| - 0.081 12.5 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_17 PF12728.2 gi|55379134|ref|YP_136984.1| - 0.1 12.8 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|55379134|ref|YP_136984.1| - 0.14 11.7 0.1 0.14 11.7 0.1 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Aldedh PF00171.17 gi|55379135|ref|YP_136985.1| - 1.2e-143 478.8 0.0 1.4e-143 478.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|55379135|ref|YP_136985.1| - 0.025 13.3 0.0 0.053 12.2 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) eIF-1a PF01176.14 gi|55379137|ref|YP_136987.1| - 5.4e-28 96.1 1.1 7.1e-28 95.8 0.8 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|55379138|ref|YP_136988.1| - 4.2e-51 172.9 0.0 4.8e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|55379138|ref|YP_136988.1| - 1.1e-07 31.8 0.2 1.9e-06 27.7 0.0 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|55379138|ref|YP_136988.1| - 4.7e-06 25.8 0.0 3.6e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|55379138|ref|YP_136988.1| - 0.0011 18.2 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|55379138|ref|YP_136988.1| - 0.027 13.6 0.0 0.036 13.2 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) PurS PF02700.9 gi|55379138|ref|YP_136988.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase HATPase_c PF02518.21 gi|55379139|ref|YP_136989.1| - 2.4e-18 65.8 0.1 5.4e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|55379139|ref|YP_136989.1| - 2e-16 60.2 0.0 3.9e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|55379139|ref|YP_136989.1| - 1.1e-10 41.3 0.8 6.4e-10 38.8 0.7 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|55379139|ref|YP_136989.1| - 2.6e-08 33.8 0.1 5.1e-08 32.9 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|55379139|ref|YP_136989.1| - 1.3e-06 28.1 0.0 2.6e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold AAA_27 PF13514.1 gi|55379139|ref|YP_136989.1| - 0.0058 14.3 0.1 0.0074 14.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain 7TMR-HDED PF07697.6 gi|55379139|ref|YP_136989.1| - 0.022 14.5 0.1 0.037 13.7 0.1 1.4 1 0 0 1 1 1 0 7TM-HD extracellular PMC2NT PF08066.7 gi|55379139|ref|YP_136989.1| - 0.076 13.3 0.2 1.5 9.1 0.0 2.8 3 0 0 3 3 3 0 PMC2NT (NUC016) domain KH_1 PF00013.24 gi|55379140|ref|YP_136990.1| - 3.2e-18 65.1 4.0 2.5e-10 39.8 0.3 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|55379140|ref|YP_136990.1| - 9.5e-09 34.7 3.4 5.9e-05 22.6 0.2 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|55379140|ref|YP_136990.1| - 1.9e-05 24.1 4.3 0.0016 17.9 0.1 2.6 2 1 1 3 3 3 2 KH domain KH_4 PF13083.1 gi|55379140|ref|YP_136990.1| - 0.02 14.5 4.0 4.2 7.0 0.3 3.2 2 1 1 3 3 3 0 KH domain 4HBT PF03061.17 gi|55379141|ref|YP_136991.1| - 2.6e-16 59.4 0.1 3.8e-16 58.9 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|55379141|ref|YP_136991.1| - 0.00049 20.5 0.0 0.00058 20.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF2207 PF09972.4 gi|55379142|ref|YP_136992.1| - 0.11 11.0 0.1 0.1 11.1 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) IncA PF04156.9 gi|55379142|ref|YP_136992.1| - 3 7.3 10.7 4 6.9 7.4 1.1 1 0 0 1 1 1 0 IncA protein MFS_1 PF07690.11 gi|55379143|ref|YP_136993.1| - 0.028 13.1 1.3 0.03 13.0 0.9 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily ECH PF00378.15 gi|55379145|ref|YP_136995.1| - 3.9e-42 144.0 1.6 4.7e-42 143.8 1.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF3105 PF11303.3 gi|55379146|ref|YP_136996.1| - 3.8e-30 104.3 0.1 4.8e-30 104.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) NAD_synthase PF02540.12 gi|55379147|ref|YP_136997.1| - 1.9e-76 256.1 0.0 2.4e-76 255.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|55379147|ref|YP_136997.1| - 9.9e-06 24.3 0.0 0.016 13.8 0.0 2.6 3 0 0 3 3 3 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|55379147|ref|YP_136997.1| - 0.00028 20.4 0.1 0.0005 19.6 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|55379147|ref|YP_136997.1| - 0.036 13.3 0.0 0.23 10.7 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DNA_pol3_delta2 PF13177.1 gi|55379148|ref|YP_136998.1| - 2e-13 50.3 0.0 2.8e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|55379148|ref|YP_136998.1| - 4.3e-13 49.0 0.0 9.6e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|55379148|ref|YP_136998.1| - 1.2e-09 38.4 0.0 2.9e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|55379148|ref|YP_136998.1| - 1.1e-07 32.0 0.2 2.1e-06 27.8 0.0 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55379148|ref|YP_136998.1| - 3.8e-07 30.3 0.0 1.1e-06 28.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|55379148|ref|YP_136998.1| - 4.9e-05 23.2 0.0 0.00018 21.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|55379148|ref|YP_136998.1| - 0.00014 21.3 0.1 0.0039 16.6 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|55379148|ref|YP_136998.1| - 0.00044 19.7 0.0 0.00099 18.6 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family T2SE PF00437.15 gi|55379148|ref|YP_136998.1| - 0.00078 18.4 0.0 0.002 17.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein TIP49 PF06068.8 gi|55379148|ref|YP_136998.1| - 0.0011 17.8 0.0 0.014 14.1 0.0 2.3 3 0 0 3 3 3 1 TIP49 C-terminus NACHT PF05729.7 gi|55379148|ref|YP_136998.1| - 0.0074 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|55379148|ref|YP_136998.1| - 0.0098 15.6 0.0 0.021 14.5 0.0 1.6 1 1 1 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|55379148|ref|YP_136998.1| - 0.01 15.5 0.0 0.05 13.3 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain Mg_chelatase PF01078.16 gi|55379148|ref|YP_136998.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Tnp_P_element_C PF12596.3 gi|55379148|ref|YP_136998.1| - 0.013 15.8 0.2 0.04 14.2 0.0 2.0 1 1 1 2 2 2 0 87kDa Transposase Rad17 PF03215.10 gi|55379148|ref|YP_136998.1| - 0.031 12.9 0.0 1.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|55379148|ref|YP_136998.1| - 0.04 14.7 0.0 0.16 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|55379148|ref|YP_136998.1| - 0.042 13.8 0.1 0.17 11.9 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|55379148|ref|YP_136998.1| - 0.055 12.9 0.0 0.8 9.1 0.0 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|55379148|ref|YP_136998.1| - 0.056 12.8 0.7 2.8 7.2 0.5 2.5 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|55379148|ref|YP_136998.1| - 0.057 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain OSCP PF00213.13 gi|55379148|ref|YP_136998.1| - 0.1 12.4 0.3 0.4 10.5 0.0 2.0 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit Ribosomal_S24e PF01282.14 gi|55379149|ref|YP_136999.1| - 3.3e-30 103.7 0.7 3.9e-30 103.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e PDEase_I_N PF08499.7 gi|55379149|ref|YP_136999.1| - 0.065 13.1 0.1 0.48 10.3 0.1 2.0 1 1 1 2 2 2 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal Ribosomal_S27 PF01599.14 gi|55379150|ref|YP_137000.1| - 8.3e-17 60.7 3.8 9e-17 60.6 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|55379150|ref|YP_137000.1| - 0.0018 18.0 1.0 0.0024 17.6 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|55379150|ref|YP_137000.1| - 0.0028 17.3 0.7 0.0035 17.1 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e RNHCP PF12647.2 gi|55379150|ref|YP_137000.1| - 0.013 15.3 0.8 0.014 15.1 0.5 1.2 1 0 0 1 1 1 0 RNHCP domain RNA_POL_M_15KD PF02150.11 gi|55379150|ref|YP_137000.1| - 0.017 14.7 1.3 0.03 14.0 0.9 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|55379150|ref|YP_137000.1| - 0.017 14.5 2.8 0.022 14.2 2.0 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|55379150|ref|YP_137000.1| - 0.017 14.7 2.7 0.023 14.3 1.9 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain FYVE PF01363.16 gi|55379150|ref|YP_137000.1| - 0.02 14.7 0.5 0.024 14.5 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger IBR PF01485.16 gi|55379150|ref|YP_137000.1| - 0.021 14.6 0.9 0.023 14.5 0.6 1.1 1 0 0 1 1 1 0 IBR domain Prok-RING_1 PF14446.1 gi|55379150|ref|YP_137000.1| - 0.029 14.0 1.2 0.038 13.7 0.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|55379150|ref|YP_137000.1| - 0.049 13.4 1.4 0.06 13.1 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.14 gi|55379150|ref|YP_137000.1| - 0.051 13.2 1.8 0.056 13.1 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GFA PF04828.9 gi|55379150|ref|YP_137000.1| - 0.052 13.5 1.5 0.18 11.7 0.2 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme NCD3G PF07562.9 gi|55379150|ref|YP_137000.1| - 0.074 12.7 2.3 0.095 12.4 1.1 1.5 1 1 1 2 2 2 0 Nine Cysteines Domain of family 3 GPCR zf-ribbon_3 PF13248.1 gi|55379150|ref|YP_137000.1| - 0.082 12.1 5.7 0.28 10.4 4.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|55379150|ref|YP_137000.1| - 0.099 12.3 7.8 3 7.6 4.9 2.1 1 1 1 2 2 2 0 Nudix N-terminal zf-C2H2_3 PF13878.1 gi|55379150|ref|YP_137000.1| - 0.15 11.6 1.1 10 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-NADH-PPase PF09297.6 gi|55379150|ref|YP_137000.1| - 0.15 11.5 5.8 5.5 6.5 4.0 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|55379150|ref|YP_137000.1| - 0.26 10.8 3.7 0.99 8.9 1.5 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|55379150|ref|YP_137000.1| - 0.29 10.5 4.1 0.63 9.3 2.8 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|55379150|ref|YP_137000.1| - 0.33 10.7 5.1 1.2 8.9 3.7 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1936 PF09151.5 gi|55379150|ref|YP_137000.1| - 0.39 10.2 4.4 1.7 8.2 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Zn_Tnp_IS1595 PF12760.2 gi|55379150|ref|YP_137000.1| - 0.44 10.3 5.4 2.2 8.1 3.8 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|55379150|ref|YP_137000.1| - 0.45 10.2 5.3 1.2 8.8 3.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|55379150|ref|YP_137000.1| - 0.53 10.1 3.7 5.7 6.8 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2082 PF09855.4 gi|55379150|ref|YP_137000.1| - 0.75 9.6 5.9 2.6 7.9 0.3 2.4 2 1 1 3 3 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_2 PF13240.1 gi|55379150|ref|YP_137000.1| - 1.7 8.2 8.7 2.7 7.6 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|55379150|ref|YP_137000.1| - 2 8.4 4.6 1 9.4 0.4 2.0 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|55379150|ref|YP_137000.1| - 2.5 8.1 7.2 2.6 8.0 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain FeS PF04060.8 gi|55379150|ref|YP_137000.1| - 2.6 7.6 4.7 0.75 9.4 0.5 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster zf-C4_Topoisom PF01396.14 gi|55379150|ref|YP_137000.1| - 2.8 7.5 5.2 1 8.9 0.2 2.0 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Fer4_6 PF12837.2 gi|55379150|ref|YP_137000.1| - 3.2 7.7 4.8 8.7 6.4 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain YhfH PF14149.1 gi|55379150|ref|YP_137000.1| - 4.7 7.0 6.1 25 4.7 3.9 2.0 1 1 1 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.1 gi|55379150|ref|YP_137000.1| - 8.5 6.4 7.8 2.5e+02 1.8 5.4 2.1 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Peptidase_M22 PF00814.20 gi|55379151|ref|YP_137001.1| - 6.7e-71 238.9 0.0 9.4e-71 238.4 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|55379151|ref|YP_137001.1| - 0.00018 20.6 0.0 0.00056 19.0 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.11 gi|55379153|ref|YP_137003.1| - 8.9e-47 158.8 0.0 7.4e-46 155.9 0.0 1.9 1 1 0 1 1 1 1 Ham1 family adh_short PF00106.20 gi|55379154|ref|YP_137004.1| - 1e-17 64.5 0.0 1.9e-17 63.7 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55379154|ref|YP_137004.1| - 5.5e-09 36.1 0.0 6.6e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55379154|ref|YP_137004.1| - 0.0002 21.0 0.0 0.00029 20.5 0.0 1.2 1 0 0 1 1 1 1 KR domain Keratin PF02422.11 gi|55379154|ref|YP_137004.1| - 0.14 12.1 0.2 1.9 8.4 0.1 2.1 1 1 1 2 2 2 0 Keratin Glyco_trans_4_4 PF13579.1 gi|55379154|ref|YP_137004.1| - 0.42 10.7 6.5 1.1 9.3 2.5 2.7 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain MCPsignal PF00015.16 gi|55379155|ref|YP_137005.1| - 2.6e-50 170.9 63.9 1.9e-46 158.3 26.2 3.6 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55379155|ref|YP_137005.1| - 3.8e-08 33.3 0.3 3.8e-08 33.3 0.2 6.6 4 3 1 5 5 5 1 HAMP domain H-kinase_dim PF02895.9 gi|55379155|ref|YP_137005.1| - 0.00063 20.0 26.0 0.042 14.1 0.1 6.0 5 1 1 6 6 6 3 Signal transducing histidine kinase, homodimeric domain AAA_13 PF13166.1 gi|55379155|ref|YP_137005.1| - 0.0011 17.4 28.4 0.0035 15.8 6.6 2.3 1 1 0 2 2 2 2 AAA domain Seryl_tRNA_N PF02403.17 gi|55379155|ref|YP_137005.1| - 0.0025 17.8 25.0 2.1 8.4 0.8 5.8 1 1 4 6 6 6 2 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|55379155|ref|YP_137005.1| - 0.017 13.7 24.7 0.23 10.0 3.7 3.2 2 1 2 4 4 4 0 Spc7 kinetochore protein Laminin_II PF06009.7 gi|55379155|ref|YP_137005.1| - 0.032 13.9 46.4 0.1 12.3 3.1 5.7 2 2 4 6 6 6 0 Laminin Domain II Syntaxin_2 PF14523.1 gi|55379155|ref|YP_137005.1| - 0.041 13.9 7.0 0.56 10.2 0.0 4.3 3 2 2 5 5 4 0 Syntaxin-like protein Syntaxin-6_N PF09177.6 gi|55379155|ref|YP_137005.1| - 0.056 13.8 32.8 0.23 11.8 1.1 5.5 2 2 2 5 5 5 0 Syntaxin 6, N-terminal DUF948 PF06103.6 gi|55379155|ref|YP_137005.1| - 0.062 13.1 43.7 0.14 12.0 1.1 6.6 4 3 2 7 7 6 0 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|55379155|ref|YP_137005.1| - 0.068 12.7 33.2 0.34 10.4 4.5 5.0 1 1 2 3 3 2 0 IncA protein DUF1664 PF07889.7 gi|55379155|ref|YP_137005.1| - 0.079 12.7 33.5 0.03 14.1 1.3 5.8 3 1 3 6 6 6 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|55379155|ref|YP_137005.1| - 0.081 12.7 28.6 1.1 9.1 0.5 6.0 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_I PF06008.9 gi|55379155|ref|YP_137005.1| - 0.1 11.9 36.2 0.73 9.1 0.9 5.0 2 2 2 4 4 4 0 Laminin Domain I APG6 PF04111.7 gi|55379155|ref|YP_137005.1| - 0.19 10.7 23.1 0.086 11.8 4.1 3.4 2 1 2 4 4 4 0 Autophagy protein Apg6 GAS PF13851.1 gi|55379155|ref|YP_137005.1| - 0.26 10.4 9.6 0.25 10.5 0.8 3.4 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.4 gi|55379155|ref|YP_137005.1| - 0.32 10.8 27.0 5.3 6.8 4.6 4.5 3 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cauli_AT PF03233.8 gi|55379155|ref|YP_137005.1| - 0.34 10.6 13.1 0.45 10.1 0.1 4.2 3 2 2 5 5 5 0 Aphid transmission protein V_ATPase_I PF01496.14 gi|55379155|ref|YP_137005.1| - 0.37 8.6 21.4 0.71 7.6 11.8 2.4 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF4200 PF13863.1 gi|55379155|ref|YP_137005.1| - 0.42 10.5 20.3 5.4 6.9 0.0 4.9 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) CorA PF01544.13 gi|55379155|ref|YP_137005.1| - 0.59 9.1 20.5 0.056 12.4 3.6 3.2 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DUF869 PF05911.6 gi|55379155|ref|YP_137005.1| - 0.97 7.5 31.9 1.6e+02 0.2 22.4 2.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) Fib_alpha PF08702.5 gi|55379155|ref|YP_137005.1| - 1.2 9.2 24.5 0.66 10.0 0.7 5.0 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Vip3A_N PF12495.3 gi|55379155|ref|YP_137005.1| - 1.2 8.8 5.6 1.4 8.5 0.1 3.2 2 2 3 5 5 5 0 Vegetative insecticide protein 3A N terminal NPV_P10 PF05531.7 gi|55379155|ref|YP_137005.1| - 1.7 8.9 39.3 2.7 8.3 1.6 6.7 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|55379155|ref|YP_137005.1| - 1.9 8.7 27.9 48 4.1 4.3 5.1 2 1 2 4 4 4 0 Syntaxin BLOC1_2 PF10046.4 gi|55379155|ref|YP_137005.1| - 2.4 8.3 31.7 4.8 7.3 2.1 5.9 2 2 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.4 gi|55379155|ref|YP_137005.1| - 2.5 6.7 26.2 0.54 8.9 5.4 3.7 1 1 3 4 4 4 0 Intra-flagellar transport protein 57 Cortex-I_coil PF09304.5 gi|55379155|ref|YP_137005.1| - 2.6 8.1 17.6 13 5.9 1.3 5.2 3 2 1 5 5 5 0 Cortexillin I, coiled coil Prominin PF05478.6 gi|55379155|ref|YP_137005.1| - 3.6 5.0 25.9 2.5 5.5 2.9 2.5 1 1 2 3 3 3 0 Prominin APG17 PF04108.7 gi|55379155|ref|YP_137005.1| - 3.7 6.2 28.0 1.1 7.9 1.5 4.4 1 1 2 3 3 3 0 Autophagy protein Apg17 ApoO PF09769.4 gi|55379155|ref|YP_137005.1| - 4.4 6.9 10.6 0.41 10.3 0.1 3.5 3 1 0 3 3 3 0 Apolipoprotein O DUF2061 PF09834.4 gi|55379155|ref|YP_137005.1| - 4.7 7.4 5.5 14 6.0 3.8 1.8 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) Reo_sigmaC PF04582.7 gi|55379155|ref|YP_137005.1| - 6.3 5.8 39.0 7.1 5.7 4.0 4.3 1 1 3 4 4 4 0 Reovirus sigma C capsid protein Med15_fungi PF05397.7 gi|55379155|ref|YP_137005.1| - 8.2 6.4 12.2 15 5.5 1.1 4.5 3 2 2 5 5 5 0 Mediator complex subunit 15 PIN_3 PF13470.1 gi|55379156|ref|YP_137006.1| - 0.00044 20.9 2.0 0.0016 19.1 1.4 1.8 1 1 0 1 1 1 1 PIN domain RHH_4 PF13467.1 gi|55379157|ref|YP_137007.1| - 0.033 14.0 0.1 0.034 14.0 0.0 1.0 1 0 0 1 1 1 0 Ribbon-helix-helix domain TrkA_N PF02254.13 gi|55379158|ref|YP_137008.1| - 3.1e-25 88.4 0.2 4.4e-25 87.9 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|55379158|ref|YP_137008.1| - 2.2e-14 52.8 0.1 4.2e-14 51.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|55379158|ref|YP_137008.1| - 2e-06 27.3 0.2 3.7e-06 26.4 0.1 1.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|55379158|ref|YP_137008.1| - 0.00024 21.1 0.2 0.00037 20.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|55379158|ref|YP_137008.1| - 0.00025 20.9 0.2 0.00034 20.4 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|55379158|ref|YP_137008.1| - 0.00064 19.3 0.2 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|55379158|ref|YP_137008.1| - 0.00091 18.9 0.1 0.0013 18.4 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55379158|ref|YP_137008.1| - 0.00093 18.3 0.1 0.0016 17.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55379158|ref|YP_137008.1| - 0.0019 17.6 0.1 0.0031 16.9 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|55379158|ref|YP_137008.1| - 0.0026 17.1 0.2 0.0062 15.9 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|55379158|ref|YP_137008.1| - 0.0029 17.8 0.1 0.0041 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|55379158|ref|YP_137008.1| - 0.0047 15.8 0.1 0.0054 15.6 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|55379158|ref|YP_137008.1| - 0.007 15.3 0.2 0.0089 15.0 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|55379158|ref|YP_137008.1| - 0.0085 15.9 0.1 0.017 14.9 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.14 gi|55379158|ref|YP_137008.1| - 0.023 13.7 0.0 0.026 13.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain XdhC_C PF13478.1 gi|55379158|ref|YP_137008.1| - 0.039 14.2 0.0 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox PF00070.22 gi|55379158|ref|YP_137008.1| - 0.067 13.6 0.6 0.16 12.3 0.3 1.8 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_chain PF00289.17 gi|55379158|ref|YP_137008.1| - 0.079 13.0 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Pyr_redox_2 PF07992.9 gi|55379158|ref|YP_137008.1| - 0.082 12.7 0.5 0.12 12.2 0.3 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|55379158|ref|YP_137008.1| - 0.099 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Gp_dh_N PF00044.19 gi|55379158|ref|YP_137008.1| - 0.14 12.0 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BsuPI PF12690.2 gi|55379159|ref|YP_137009.1| - 0.00057 19.5 1.5 0.87 9.3 0.0 3.6 4 0 0 4 4 4 2 Intracellular proteinase inhibitor Fn3-like PF14310.1 gi|55379159|ref|YP_137009.1| - 0.0008 19.3 2.4 1.3 8.9 0.0 3.1 3 1 0 3 3 3 2 Fibronectin type III-like domain A2M PF00207.17 gi|55379159|ref|YP_137009.1| - 0.0094 15.5 0.1 4.3 6.9 0.0 2.4 2 0 0 2 2 2 2 Alpha-2-macroglobulin family DUF916 PF06030.7 gi|55379159|ref|YP_137009.1| - 0.14 11.9 1.2 16 5.2 0.0 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF916) Lactamase_B_2 PF12706.2 gi|55379160|ref|YP_137010.1| - 2.4e-30 105.5 0.4 3.8e-30 104.8 0.3 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|55379160|ref|YP_137010.1| - 1.1e-16 61.0 2.2 4.4e-15 55.8 1.5 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|55379160|ref|YP_137010.1| - 0.0098 15.3 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease GFO_IDH_MocA PF01408.17 gi|55379161|ref|YP_137011.1| - 7.3e-25 87.8 0.2 1.2e-24 87.0 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55379161|ref|YP_137011.1| - 1.2e-07 31.4 0.1 2.6e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.7 gi|55379161|ref|YP_137011.1| - 0.051 12.9 0.0 0.088 12.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF4066 PF13278.1 gi|55379162|ref|YP_137012.1| - 2.1e-35 121.4 0.1 2.6e-35 121.1 0.1 1.1 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|55379162|ref|YP_137012.1| - 5.7e-15 55.0 0.3 8.4e-15 54.5 0.2 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Fer2_2 PF01799.15 gi|55379162|ref|YP_137012.1| - 0.016 15.0 0.0 0.066 13.1 0.0 1.8 1 1 1 2 2 2 0 [2Fe-2S] binding domain PhzC-PhzF PF02567.11 gi|55379163|ref|YP_137013.1| - 1.3e-65 221.4 0.0 1.4e-65 221.2 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|55379163|ref|YP_137013.1| - 0.046 12.5 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 Proline racemase Glyoxalase_2 PF12681.2 gi|55379164|ref|YP_137014.1| - 1.2e-16 61.2 0.8 1.4e-16 61.0 0.6 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|55379164|ref|YP_137014.1| - 2.9e-13 49.9 0.3 3.2e-13 49.7 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|55379164|ref|YP_137014.1| - 3.8e-12 46.1 0.2 4.6e-12 45.9 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|55379164|ref|YP_137014.1| - 0.00058 19.8 0.6 0.018 14.9 0.4 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.1 gi|55379164|ref|YP_137014.1| - 0.0026 17.6 0.0 0.0035 17.2 0.0 1.1 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Polysacc_synt_3 PF13440.1 gi|55379165|ref|YP_137015.1| - 0.00017 21.1 25.3 0.00017 21.1 17.6 3.6 2 2 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|55379165|ref|YP_137015.1| - 0.0019 18.0 12.2 0.0019 18.0 8.4 3.9 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain HAMP PF00672.20 gi|55379165|ref|YP_137015.1| - 3.2 8.0 0.0 3.2 8.0 0.0 5.9 5 1 1 6 6 6 0 HAMP domain DUF3318 PF11780.3 gi|55379166|ref|YP_137016.1| - 0.089 12.3 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) DUF1328 PF07043.8 gi|55379167|ref|YP_137017.1| - 4e-10 39.4 19.0 5.4e-10 39.0 13.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF4017 PF13209.1 gi|55379167|ref|YP_137017.1| - 0.056 13.2 5.1 0.074 12.8 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4017) Epiglycanin_C PF14654.1 gi|55379167|ref|YP_137017.1| - 0.37 10.8 2.5 0.43 10.6 1.7 1.1 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region Rab5ip PF07019.7 gi|55379167|ref|YP_137017.1| - 1.2 9.2 8.0 2.9 8.1 5.1 1.7 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) Tetraspannin PF00335.15 gi|55379167|ref|YP_137017.1| - 5 6.3 6.6 5.3 6.2 4.6 1.1 1 0 0 1 1 1 0 Tetraspanin family PALP PF00291.20 gi|55379168|ref|YP_137018.1| - 5.4e-80 268.8 6.2 7.1e-80 268.4 4.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|55379168|ref|YP_137018.1| - 1.5e-06 28.4 0.0 5e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|55379168|ref|YP_137018.1| - 0.00029 20.2 1.4 0.00071 19.0 0.1 2.4 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|55379168|ref|YP_137018.1| - 0.0083 15.8 0.7 0.023 14.4 0.0 2.1 3 0 0 3 3 3 1 ACT domain CagE_TrbE_VirB PF03135.9 gi|55379168|ref|YP_137018.1| - 0.041 13.6 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Pep_deformylase PF01327.16 gi|55379168|ref|YP_137018.1| - 0.42 9.9 1.9 1.5 8.2 0.0 2.5 2 1 1 3 3 3 0 Polypeptide deformylase TrkA_N PF02254.13 gi|55379169|ref|YP_137019.1| - 7.7e-42 141.9 6.1 5.3e-21 74.7 0.5 3.4 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|55379169|ref|YP_137019.1| - 1.6e-26 91.6 0.6 4.1e-12 45.5 0.0 3.0 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|55379169|ref|YP_137019.1| - 0.00045 19.8 2.8 0.0013 18.3 2.0 1.8 1 1 0 1 1 1 1 Ion channel AlaDh_PNT_C PF01262.16 gi|55379169|ref|YP_137019.1| - 0.00076 19.0 0.9 0.056 13.0 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|55379169|ref|YP_137019.1| - 0.0025 17.6 5.0 0.3 10.9 0.2 3.4 3 1 1 4 4 4 2 ThiF family XdhC_C PF13478.1 gi|55379169|ref|YP_137019.1| - 0.0037 17.5 0.4 0.0082 16.4 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|55379169|ref|YP_137019.1| - 0.0093 15.0 0.1 0.015 14.4 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|55379169|ref|YP_137019.1| - 0.027 14.8 0.0 0.15 12.5 0.0 2.3 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|55379169|ref|YP_137019.1| - 0.065 13.2 0.1 0.4 10.7 0.1 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|55379169|ref|YP_137019.1| - 0.15 11.6 4.5 0.53 9.9 0.1 3.1 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Citrate_synt PF00285.16 gi|55379170|ref|YP_137020.1| - 8e-131 435.9 0.0 9e-131 435.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase TrkA_C PF02080.16 gi|55379171|ref|YP_137021.1| - 1.2e-30 104.8 2.0 5.4e-16 57.9 0.0 3.2 2 1 1 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|55379171|ref|YP_137021.1| - 2e-13 50.5 7.1 2e-06 28.1 1.3 2.6 2 1 0 2 2 2 2 PhoU domain Cupin_6 PF12852.2 gi|55379171|ref|YP_137021.1| - 0.0012 18.4 0.1 0.0065 16.1 0.0 2.1 2 0 0 2 2 2 1 Cupin AstE_AspA PF04952.9 gi|55379173|ref|YP_137023.1| - 2.6e-54 184.0 0.0 3e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|55379174|ref|YP_137024.1| - 1e-58 198.9 1.5 1.2e-58 198.7 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1743 PF08489.6 gi|55379177|ref|YP_137027.1| - 1.5e-40 137.5 0.0 2.9e-40 136.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|55379177|ref|YP_137027.1| - 0.00043 20.0 0.0 0.00091 19.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|55379177|ref|YP_137027.1| - 0.00073 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|55379177|ref|YP_137027.1| - 0.0042 16.7 0.5 0.0085 15.7 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|55379177|ref|YP_137027.1| - 0.047 13.4 0.1 0.089 12.5 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|55379177|ref|YP_137027.1| - 0.05 13.5 2.3 5.7 6.9 0.1 2.9 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|55379177|ref|YP_137027.1| - 0.084 12.7 1.5 0.19 11.5 1.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|55379177|ref|YP_137027.1| - 0.12 12.2 1.5 0.28 11.0 1.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|55379177|ref|YP_137027.1| - 0.46 10.9 3.1 15 6.1 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_3 PF01381.17 gi|55379178|ref|YP_137028.1| - 2.4e-08 33.6 0.0 4.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|55379178|ref|YP_137028.1| - 2.1e-05 24.6 0.1 4.2e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|55379178|ref|YP_137028.1| - 6.7e-05 22.8 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55379178|ref|YP_137028.1| - 0.00013 21.5 0.0 0.00034 20.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|55379178|ref|YP_137028.1| - 0.00032 20.2 0.2 0.00077 19.0 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|55379178|ref|YP_137028.1| - 0.0062 16.5 0.0 0.016 15.1 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55379178|ref|YP_137028.1| - 0.013 14.7 0.0 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|55379178|ref|YP_137028.1| - 0.037 13.5 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_25 PF13413.1 gi|55379178|ref|YP_137028.1| - 0.053 13.1 0.6 0.093 12.3 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|55379178|ref|YP_137028.1| - 0.083 12.4 0.0 0.21 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family NUMOD1 PF07453.8 gi|55379178|ref|YP_137028.1| - 0.084 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_Tnp_Tc3_2 PF01498.13 gi|55379178|ref|YP_137028.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_36 PF13730.1 gi|55379178|ref|YP_137028.1| - 0.17 12.0 0.0 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GST_N_3 PF13417.1 gi|55379179|ref|YP_137029.1| - 8.3e-14 51.5 0.0 9.2e-14 51.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|55379179|ref|YP_137029.1| - 4.8e-12 45.6 0.0 7.2e-12 45.1 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|55379179|ref|YP_137029.1| - 1.4e-10 40.9 0.0 1.7e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|55379179|ref|YP_137029.1| - 0.014 15.6 0.2 0.017 15.4 0.2 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|55379179|ref|YP_137029.1| - 0.098 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.22 gi|55379180|ref|YP_137030.1| - 2.4e-11 43.4 2.8 5.7e-11 42.2 1.9 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|55379180|ref|YP_137030.1| - 0.0004 19.6 0.1 0.00052 19.2 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|55379180|ref|YP_137030.1| - 0.024 14.4 0.1 0.03 14.0 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|55379180|ref|YP_137030.1| - 0.1 11.9 0.2 0.15 11.3 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase PGM_PMM_I PF02878.11 gi|55379181|ref|YP_137031.1| - 1.9e-36 124.6 0.0 3.7e-36 123.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|55379181|ref|YP_137031.1| - 1.1e-27 96.3 0.2 1.1e-27 96.3 0.2 2.2 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|55379181|ref|YP_137031.1| - 1.3e-15 57.3 0.0 2.7e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|55379181|ref|YP_137031.1| - 5.4e-15 55.1 0.2 1.6e-14 53.6 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Seryl_tRNA_N PF02403.17 gi|55379182|ref|YP_137032.1| - 0.085 12.8 2.3 0.1 12.5 0.2 2.3 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|55379182|ref|YP_137032.1| - 2 7.9 6.5 0.2 11.2 1.0 1.9 2 0 0 2 2 2 0 IncA protein PRA-CH PF01502.13 gi|55379183|ref|YP_137033.1| - 3.3e-37 125.9 0.5 4.5e-37 125.5 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.6 gi|55379184|ref|YP_137034.1| - 1.2e-18 67.3 0.0 1.1e-17 64.1 0.0 2.0 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Fer2 PF00111.22 gi|55379185|ref|YP_137035.1| - 8.4e-15 54.2 0.2 1.3e-14 53.7 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|55379185|ref|YP_137035.1| - 0.087 12.6 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|55379186|ref|YP_137036.1| - 5.3e-57 192.9 32.0 5.3e-57 192.9 22.2 1.6 2 0 0 2 2 2 1 Phosphate transporter family B12D PF06522.6 gi|55379186|ref|YP_137036.1| - 4.8 6.9 5.2 73 3.1 0.0 3.3 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit IncA PF04156.9 gi|55379188|ref|YP_137037.1| - 4e-09 36.3 8.7 4e-09 36.3 6.0 2.1 1 1 1 2 2 2 1 IncA protein MCPsignal PF00015.16 gi|55379188|ref|YP_137037.1| - 0.00018 21.1 44.4 0.0012 18.3 13.8 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|55379188|ref|YP_137037.1| - 0.00088 19.0 41.9 0.38 10.5 8.9 3.6 1 1 2 3 3 3 3 Laminin Domain II BLOC1_2 PF10046.4 gi|55379188|ref|YP_137037.1| - 0.0018 18.3 7.8 0.0018 18.3 5.4 4.1 2 2 2 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 WXG100 PF06013.7 gi|55379188|ref|YP_137037.1| - 0.0029 17.5 24.4 0.073 13.0 3.9 4.4 1 1 2 4 4 4 2 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|55379188|ref|YP_137037.1| - 0.0032 16.1 13.7 0.0032 16.1 9.5 2.3 1 1 1 2 2 2 1 Spc7 kinetochore protein EzrA PF06160.7 gi|55379188|ref|YP_137037.1| - 0.0034 15.6 20.9 0.0034 15.6 14.5 2.0 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA DUF3540 PF12059.3 gi|55379188|ref|YP_137037.1| - 0.0051 16.4 13.1 0.0051 16.4 9.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3540) DUF4200 PF13863.1 gi|55379188|ref|YP_137037.1| - 0.0077 16.1 33.6 0.16 11.9 9.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4200) AAA_13 PF13166.1 gi|55379188|ref|YP_137037.1| - 0.01 14.3 34.6 0.022 13.2 24.0 1.4 1 1 0 1 1 1 0 AAA domain Nup54 PF13874.1 gi|55379188|ref|YP_137037.1| - 0.011 15.4 4.8 0.011 15.4 3.3 3.2 1 1 1 2 2 1 0 Nucleoporin complex subunit 54 PilJ PF13675.1 gi|55379188|ref|YP_137037.1| - 0.04 14.2 15.4 0.31 11.3 3.9 3.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Tropomyosin PF00261.15 gi|55379188|ref|YP_137037.1| - 0.046 12.8 52.0 0.055 12.5 17.0 2.1 2 0 0 2 2 2 0 Tropomyosin Laminin_I PF06008.9 gi|55379188|ref|YP_137037.1| - 0.097 11.9 34.8 0.042 13.1 10.6 2.6 1 1 0 2 2 2 0 Laminin Domain I DUF4201 PF13870.1 gi|55379188|ref|YP_137037.1| - 0.12 11.8 21.7 0.86 9.0 6.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) ISG65-75 PF11727.3 gi|55379188|ref|YP_137037.1| - 0.12 11.3 46.6 0.13 11.3 12.7 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein CorA PF01544.13 gi|55379188|ref|YP_137037.1| - 0.12 11.3 14.8 0.077 12.0 3.2 2.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF3584 PF12128.3 gi|55379188|ref|YP_137037.1| - 0.13 9.6 37.6 0.16 9.2 26.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Fib_alpha PF08702.5 gi|55379188|ref|YP_137037.1| - 0.19 11.8 29.7 4.7 7.3 6.1 3.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF2232 PF09991.4 gi|55379188|ref|YP_137037.1| - 0.36 9.7 9.4 0.14 11.1 1.4 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2232) Atg14 PF10186.4 gi|55379188|ref|YP_137037.1| - 0.37 9.7 25.6 0.14 11.0 2.2 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DASH_Duo1 PF08651.5 gi|55379188|ref|YP_137037.1| - 0.45 10.1 8.8 36 4.0 3.3 3.7 2 1 0 2 2 2 0 DASH complex subunit Duo1 Syntaxin PF00804.20 gi|55379188|ref|YP_137037.1| - 0.56 10.4 29.7 3.5 7.8 7.7 2.5 1 1 1 2 2 2 0 Syntaxin TMPIT PF07851.8 gi|55379188|ref|YP_137037.1| - 0.58 9.1 25.3 0.88 8.5 6.5 2.1 2 0 0 2 2 2 0 TMPIT-like protein DUF3552 PF12072.3 gi|55379188|ref|YP_137037.1| - 0.73 9.0 47.2 1.2 8.3 19.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Synaptobrevin PF00957.16 gi|55379188|ref|YP_137037.1| - 0.81 9.3 29.2 1.7 8.3 4.6 4.1 1 1 2 4 4 4 0 Synaptobrevin DUF1664 PF07889.7 gi|55379188|ref|YP_137037.1| - 1.1 9.1 29.4 0.28 10.9 6.3 3.3 1 1 1 2 2 1 0 Protein of unknown function (DUF1664) Syntaxin-6_N PF09177.6 gi|55379188|ref|YP_137037.1| - 1.4 9.3 32.7 0.81 10.1 4.8 3.6 1 1 2 3 3 2 0 Syntaxin 6, N-terminal COG2 PF06148.6 gi|55379188|ref|YP_137037.1| - 1.5 8.6 29.6 1.7 8.5 2.2 4.1 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF869 PF05911.6 gi|55379188|ref|YP_137037.1| - 1.5 6.9 39.9 2 6.5 27.7 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Serine_rich PF08824.5 gi|55379188|ref|YP_137037.1| - 1.6 8.4 15.1 2.3 7.9 0.8 3.1 1 1 2 3 3 3 0 Serine rich protein interaction domain YjcZ PF13990.1 gi|55379188|ref|YP_137037.1| - 1.7 7.6 19.5 0.12 11.4 5.9 2.4 1 1 1 2 2 2 0 YjcZ-like protein FlgN PF05130.7 gi|55379188|ref|YP_137037.1| - 2.6 8.2 26.8 0.077 13.2 4.4 2.9 1 1 2 3 3 3 0 FlgN protein Snapin_Pallidin PF14712.1 gi|55379188|ref|YP_137037.1| - 3.6 7.9 18.8 0.13 12.5 2.6 3.3 1 1 3 4 4 4 0 Snapin/Pallidin ApoLp-III PF07464.6 gi|55379188|ref|YP_137037.1| - 6 6.8 50.7 0.21 11.6 9.6 3.2 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) V_ATPase_I PF01496.14 gi|55379188|ref|YP_137037.1| - 6.4 4.4 33.3 4.5 4.9 11.8 2.5 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Reo_sigmaC PF04582.7 gi|55379188|ref|YP_137037.1| - 6.7 5.7 19.9 7.9 5.5 4.5 2.2 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Sec34 PF04136.10 gi|55379188|ref|YP_137037.1| - 7.4 6.2 17.8 1.1 8.9 0.7 3.2 1 1 1 3 3 3 0 Sec34-like family DUF2580 PF10824.3 gi|55379188|ref|YP_137037.1| - 7.7 6.9 28.7 1.9 8.8 10.5 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF2580) DUF4231 PF14015.1 gi|55379188|ref|YP_137037.1| - 7.9 6.5 7.1 7.3 6.6 2.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) TMP_2 PF06791.8 gi|55379188|ref|YP_137037.1| - 7.9 6.0 31.5 0.077 12.5 9.1 2.6 1 1 1 2 2 2 0 Prophage tail length tape measure protein PPE PF00823.14 gi|55379188|ref|YP_137037.1| - 8.7 6.1 24.4 2.3 8.0 8.5 3.7 3 1 0 3 3 3 0 PPE family DUF2935 PF11155.3 gi|55379188|ref|YP_137037.1| - 9.6 6.3 18.4 1.5e+04 -5.0 12.8 3.1 1 1 0 1 1 0 0 Domain of unknown function (DUF2935) Prominin PF05478.6 gi|55379188|ref|YP_137037.1| - 9.9 3.5 23.4 0.88 7.0 5.9 2.1 1 1 1 2 2 2 0 Prominin His_biosynth PF00977.16 gi|229269504|ref|YP_137038.2| - 3.1e-71 239.2 4.3 3.5e-71 239.0 3.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|229269504|ref|YP_137038.2| - 1.4e-11 43.9 1.2 2.4e-08 33.2 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|229269504|ref|YP_137038.2| - 5.2e-08 32.0 0.1 0.0048 15.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|229269504|ref|YP_137038.2| - 1.8e-07 30.6 3.3 0.00085 18.6 0.2 2.4 2 1 0 2 2 2 2 PcrB family NMO PF03060.10 gi|229269504|ref|YP_137038.2| - 4.9e-06 25.9 1.4 4.9e-06 25.9 1.0 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|229269504|ref|YP_137038.2| - 3.9e-05 22.8 4.4 0.047 12.7 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|229269504|ref|YP_137038.2| - 7.2e-05 21.9 0.2 0.0028 16.7 0.0 2.6 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|229269504|ref|YP_137038.2| - 0.00011 21.2 3.6 0.018 13.9 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|229269504|ref|YP_137038.2| - 0.00049 19.1 0.4 0.29 10.0 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|229269504|ref|YP_137038.2| - 0.00049 19.0 13.9 0.012 14.4 1.9 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|229269504|ref|YP_137038.2| - 0.00064 18.3 0.9 0.52 8.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain TMP-TENI PF02581.12 gi|229269504|ref|YP_137038.2| - 0.024 13.7 0.9 0.041 12.9 0.1 1.7 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI B12-binding PF02310.14 gi|229269504|ref|YP_137038.2| - 0.026 14.3 2.8 2.4 8.0 0.1 2.5 2 0 0 2 2 2 0 B12 binding domain Ribul_P_3_epim PF00834.14 gi|229269504|ref|YP_137038.2| - 0.026 13.6 2.0 0.22 10.6 0.1 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF561 PF04481.7 gi|229269504|ref|YP_137038.2| - 0.062 12.2 0.1 0.092 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.7 gi|229269504|ref|YP_137038.2| - 0.11 11.5 0.5 0.21 10.6 0.1 1.6 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Methyltransf_11 PF08241.7 gi|55379189|ref|YP_137039.1| - 2.1e-16 60.1 0.0 3.5e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379189|ref|YP_137039.1| - 9.7e-13 48.3 0.0 1.4e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379189|ref|YP_137039.1| - 1.6e-10 40.9 0.0 2.4e-10 40.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379189|ref|YP_137039.1| - 1.5e-09 37.6 0.0 1.9e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379189|ref|YP_137039.1| - 4.3e-08 33.7 0.0 6.7e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55379189|ref|YP_137039.1| - 5.9e-08 33.1 0.0 1.1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379189|ref|YP_137039.1| - 3.7e-07 30.1 0.2 6.2e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|55379189|ref|YP_137039.1| - 7.1e-05 22.5 0.0 9.7e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.13 gi|55379189|ref|YP_137039.1| - 0.00054 19.1 0.0 0.0011 18.1 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|55379189|ref|YP_137039.1| - 0.0021 17.1 0.0 0.0039 16.3 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|55379189|ref|YP_137039.1| - 0.0052 16.1 0.0 0.0081 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Pox_MCEL PF03291.11 gi|55379189|ref|YP_137039.1| - 0.032 13.1 0.0 0.25 10.1 0.0 1.9 2 0 0 2 2 2 0 mRNA capping enzyme CP12 PF02672.10 gi|55379189|ref|YP_137039.1| - 0.096 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 CP12 domain MetW PF07021.7 gi|55379189|ref|YP_137039.1| - 0.11 11.8 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MutS_V PF00488.16 gi|55379190|ref|YP_137040.1| - 2e-96 321.9 0.0 3.5e-96 321.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|55379190|ref|YP_137040.1| - 8.9e-42 143.1 6.0 1.8e-41 142.1 4.2 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|55379190|ref|YP_137040.1| - 9.9e-27 93.2 0.0 1.9e-26 92.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|55379190|ref|YP_137040.1| - 8.3e-24 83.5 0.8 1.7e-23 82.5 0.5 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|55379190|ref|YP_137040.1| - 1.1e-21 77.3 0.0 2.6e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|55379190|ref|YP_137040.1| - 0.036 13.5 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|55379190|ref|YP_137040.1| - 0.098 12.5 0.0 0.35 10.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|55379191|ref|YP_137041.1| - 1.2e-20 73.3 0.6 3.8e-20 71.6 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|55379191|ref|YP_137041.1| - 6.4e-16 58.6 0.0 1.6e-15 57.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.19 gi|55379191|ref|YP_137041.1| - 7.4e-14 51.7 0.0 2e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|55379191|ref|YP_137041.1| - 1.1e-13 51.1 0.1 3.7e-13 49.4 0.1 2.0 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|55379191|ref|YP_137041.1| - 3.4e-13 49.3 0.6 3.4e-13 49.3 0.4 2.5 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55379191|ref|YP_137041.1| - 4.9e-12 46.5 2.3 1.2e-11 45.3 0.2 2.6 3 0 0 3 3 3 1 GAF domain PAS_3 PF08447.6 gi|55379191|ref|YP_137041.1| - 9.8e-08 31.9 0.0 5.4e-07 29.6 0.0 2.3 3 0 0 3 3 2 1 PAS fold PAS PF00989.19 gi|55379191|ref|YP_137041.1| - 2.2e-07 30.6 0.0 2.7e-06 27.1 0.0 2.7 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.1 gi|55379191|ref|YP_137041.1| - 4.2e-07 30.1 0.0 1e-06 28.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|55379191|ref|YP_137041.1| - 0.0006 19.5 0.1 0.002 17.9 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|55379191|ref|YP_137041.1| - 0.00092 18.8 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|55379191|ref|YP_137041.1| - 0.0035 17.4 0.8 0.0079 16.3 0.1 2.0 2 0 0 2 2 2 1 GAF domain ABC_tran PF00005.22 gi|55379192|ref|YP_137042.1| - 2.3e-29 102.4 0.0 3.6e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379192|ref|YP_137042.1| - 6.2e-12 46.0 0.2 1.2e-05 25.4 0.0 2.9 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|55379192|ref|YP_137042.1| - 0.00031 20.1 0.1 0.00059 19.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55379192|ref|YP_137042.1| - 0.0017 18.6 0.0 0.0021 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55379192|ref|YP_137042.1| - 0.0022 17.2 0.5 0.82 8.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain CarboxypepD_reg PF13620.1 gi|55379192|ref|YP_137042.1| - 0.012 15.6 0.1 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF4162 PF13732.1 gi|55379192|ref|YP_137042.1| - 0.018 15.5 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|55379192|ref|YP_137042.1| - 0.019 14.9 0.1 0.036 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|55379192|ref|YP_137042.1| - 0.026 14.1 0.1 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|55379192|ref|YP_137042.1| - 0.049 13.0 0.2 0.15 11.4 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|55379192|ref|YP_137042.1| - 0.059 13.1 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|55379192|ref|YP_137042.1| - 0.066 13.4 0.1 0.18 12.0 0.0 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|55379192|ref|YP_137042.1| - 0.07 12.8 0.9 0.69 9.5 0.0 2.6 3 0 0 3 3 3 0 NTPase MukB PF04310.7 gi|55379192|ref|YP_137042.1| - 0.11 11.8 0.0 0.25 10.6 0.0 1.6 2 0 0 2 2 2 0 MukB N-terminal AAA_10 PF12846.2 gi|55379192|ref|YP_137042.1| - 0.11 11.9 0.1 0.25 10.7 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|55379192|ref|YP_137042.1| - 0.13 12.3 2.4 2 8.5 1.7 2.2 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|55379192|ref|YP_137042.1| - 0.17 10.7 0.1 0.26 10.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC2_membrane_3 PF12698.2 gi|55379193|ref|YP_137043.1| - 0.0046 16.0 18.7 0.0096 14.9 12.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein YlaH PF14036.1 gi|55379193|ref|YP_137043.1| - 0.16 12.0 5.3 4.7 7.3 1.1 2.6 2 0 0 2 2 2 0 YlaH-like protein ABC2_membrane_2 PF12679.2 gi|55379193|ref|YP_137043.1| - 0.42 9.4 14.7 0.15 10.9 8.1 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein MucB_RseB PF03888.9 gi|55379195|ref|YP_137045.1| - 0.019 14.0 0.0 0.057 12.4 0.0 1.8 2 0 0 2 2 2 0 MucB/RseB family HTH_20 PF12840.2 gi|55379196|ref|YP_137046.1| - 1.6e-05 24.6 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55379196|ref|YP_137046.1| - 3.5e-05 23.1 0.0 4.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|55379196|ref|YP_137046.1| - 0.0001 21.7 0.0 0.00015 21.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|55379196|ref|YP_137046.1| - 0.00073 19.1 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|55379196|ref|YP_137046.1| - 0.0013 18.3 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|55379196|ref|YP_137046.1| - 0.0017 17.8 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|55379196|ref|YP_137046.1| - 0.0022 17.6 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|55379196|ref|YP_137046.1| - 0.0036 17.2 0.0 0.0046 16.8 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.15 gi|55379196|ref|YP_137046.1| - 0.0065 16.1 0.0 0.009 15.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|55379196|ref|YP_137046.1| - 0.024 14.4 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Pro-kuma_activ PF09286.6 gi|55379196|ref|YP_137046.1| - 0.031 14.3 0.0 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_Crp_2 PF13545.1 gi|55379196|ref|YP_137046.1| - 0.043 13.5 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|55379196|ref|YP_137046.1| - 0.044 13.5 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_23 PF13384.1 gi|55379196|ref|YP_137046.1| - 0.056 13.1 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|55379196|ref|YP_137046.1| - 0.063 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|55379196|ref|YP_137046.1| - 0.066 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|55379196|ref|YP_137046.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.1 gi|55379196|ref|YP_137046.1| - 0.092 12.7 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MscS_TM PF12794.2 gi|55379197|ref|YP_137047.1| - 0.0013 17.3 1.8 0.0015 17.1 1.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 NfeD PF01957.13 gi|55379197|ref|YP_137047.1| - 0.071 13.2 3.8 4.4 7.4 2.1 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Acyl_transf_3 PF01757.17 gi|55379197|ref|YP_137047.1| - 0.072 11.9 3.9 0.083 11.7 2.7 1.1 1 0 0 1 1 1 0 Acyltransferase family ECF-ribofla_trS PF07155.7 gi|55379197|ref|YP_137047.1| - 0.074 12.7 1.6 0.081 12.6 1.1 1.1 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component Na_H_Exchanger PF00999.16 gi|55379197|ref|YP_137047.1| - 0.11 10.9 3.7 0.12 10.8 2.6 1.0 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family QCR10 PF09796.4 gi|55379197|ref|YP_137047.1| - 0.19 11.4 1.3 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) Tetraspannin PF00335.15 gi|55379197|ref|YP_137047.1| - 0.2 10.9 2.4 0.25 10.6 1.7 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3792 PF12670.2 gi|55379197|ref|YP_137047.1| - 0.23 11.3 5.6 3.7 7.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) FeoB_C PF07664.7 gi|55379197|ref|YP_137047.1| - 0.32 10.4 0.2 0.32 10.4 0.1 2.2 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus SUR7 PF06687.7 gi|55379197|ref|YP_137047.1| - 0.5 9.8 6.5 0.14 11.7 1.7 1.7 1 1 0 2 2 2 0 SUR7/PalI family DUF4396 PF14342.1 gi|55379197|ref|YP_137047.1| - 0.7 9.9 2.9 1.2 9.2 2.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4396) Bax1-I PF01027.15 gi|55379197|ref|YP_137047.1| - 0.7 9.4 8.3 0.098 12.2 1.7 1.9 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF202 PF02656.10 gi|55379197|ref|YP_137047.1| - 3.8 7.7 9.2 9.9 6.4 3.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Oxidored_molyb PF00174.14 gi|55379198|ref|YP_137048.1| - 0.00036 19.9 0.0 0.0014 18.0 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RNA_pol_N PF01194.12 gi|55379199|ref|YP_137049.1| - 0.053 13.5 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerases N / 8 kDa subunit Hydrolase_3 PF08282.7 gi|55379202|ref|YP_137052.1| - 1.2e-09 38.1 0.0 0.00093 18.8 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|55379202|ref|YP_137052.1| - 7.4e-06 26.2 0.1 0.00013 22.1 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MutL_C PF08676.6 gi|55379204|ref|YP_137054.1| - 5.7e-36 123.2 0.0 8.6e-36 122.6 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|55379204|ref|YP_137054.1| - 5.1e-31 106.6 0.0 9.6e-31 105.7 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|55379204|ref|YP_137054.1| - 1.9e-11 43.7 0.1 4.3e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|55379204|ref|YP_137054.1| - 5.1e-11 42.2 1.1 8.6e-11 41.5 0.2 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PfkB PF00294.19 gi|55379205|ref|YP_137055.1| - 2.5e-26 92.5 0.3 2.8e-26 92.3 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF1685 PF07939.6 gi|55379205|ref|YP_137055.1| - 0.089 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1685) GCV_T PF01571.16 gi|55379206|ref|YP_137056.1| - 2.1e-38 131.8 0.0 2.8e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|55379206|ref|YP_137056.1| - 3.2e-16 59.1 0.0 6.3e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Fer2 PF00111.22 gi|55379207|ref|YP_137057.1| - 4.3e-08 32.7 0.0 6.4e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|55379207|ref|YP_137057.1| - 0.00085 19.0 0.2 0.002 17.8 0.1 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain ACT PF01842.20 gi|55379208|ref|YP_137058.1| - 2.3e-08 33.3 1.5 4.7e-08 32.3 0.2 2.2 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|55379208|ref|YP_137058.1| - 5.9e-05 23.3 1.0 0.00064 20.0 0.1 2.4 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|55379208|ref|YP_137058.1| - 0.002 17.5 0.2 0.0044 16.5 0.0 1.6 2 0 0 2 2 2 1 ACT domain CM_2 PF01817.16 gi|55379208|ref|YP_137058.1| - 0.037 14.1 0.0 0.096 12.7 0.0 1.7 2 0 0 2 2 2 0 Chorismate mutase type II IGPD PF00475.13 gi|55379209|ref|YP_137059.1| - 5.4e-62 207.9 1.4 5.4e-62 207.9 1.0 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Abhydrolase_6 PF12697.2 gi|55379210|ref|YP_137060.1| - 6.6e-27 94.8 11.1 7.8e-27 94.6 7.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55379210|ref|YP_137060.1| - 7e-19 68.3 0.6 6.4e-17 61.8 0.4 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|55379210|ref|YP_137060.1| - 4.2e-11 42.7 2.1 1.3e-10 41.2 1.4 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family TrkA_N PF02254.13 gi|55379211|ref|YP_137061.1| - 8.6e-28 96.6 3.6 8.6e-28 96.6 2.5 1.8 2 0 0 2 2 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|55379211|ref|YP_137061.1| - 1.1e-17 63.6 25.2 1.5e-17 63.1 17.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|55379211|ref|YP_137061.1| - 2.7e-09 36.4 0.8 9.2e-09 34.7 0.0 2.4 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|55379211|ref|YP_137061.1| - 2.6e-06 27.6 0.5 7.8e-06 26.0 0.4 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|55379211|ref|YP_137061.1| - 0.00014 22.2 0.9 0.0033 17.7 0.3 2.4 1 1 1 2 2 2 1 XdhC Rossmann domain Rossmann-like PF10727.4 gi|55379211|ref|YP_137061.1| - 0.00033 20.3 1.1 0.001 18.7 0.8 1.9 1 0 0 1 1 1 1 Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|55379211|ref|YP_137061.1| - 0.00066 19.1 0.1 0.0012 18.2 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|55379211|ref|YP_137061.1| - 0.0011 18.1 0.1 0.0018 17.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.10 gi|55379211|ref|YP_137061.1| - 0.0029 17.4 0.5 0.011 15.6 0.2 1.9 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|55379211|ref|YP_137061.1| - 0.0035 17.0 0.6 0.0035 17.0 0.4 2.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55379211|ref|YP_137061.1| - 0.0083 15.5 0.1 0.017 14.5 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DFP PF04127.10 gi|55379211|ref|YP_137061.1| - 0.015 14.8 1.1 0.015 14.8 0.7 1.7 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Pyr_redox PF00070.22 gi|55379211|ref|YP_137061.1| - 0.025 14.9 0.1 0.072 13.4 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|55379211|ref|YP_137061.1| - 0.027 13.6 0.0 0.078 12.1 0.0 1.8 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_U4 PF03419.8 gi|55379211|ref|YP_137061.1| - 0.54 9.2 2.2 0.58 9.1 0.0 2.0 2 1 0 2 2 2 0 Sporulation factor SpoIIGA tRNA-synt_2c PF01411.14 gi|55379213|ref|YP_137063.1| - 2.2e-116 389.3 0.0 2.7e-116 389.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|55379213|ref|YP_137063.1| - 1.1e-13 50.7 0.4 2.8e-13 49.5 0.3 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|55379213|ref|YP_137063.1| - 7.2e-10 38.4 2.8 2.6e-09 36.6 1.9 2.0 1 0 0 1 1 1 1 DHHA1 domain Rep_fac_C PF08542.6 gi|55379214|ref|YP_137064.1| - 6.2e-23 80.5 0.0 1.3e-22 79.5 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|55379214|ref|YP_137064.1| - 4e-20 72.3 0.0 8.8e-19 68.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|55379214|ref|YP_137064.1| - 4e-17 62.3 0.0 1.8e-12 47.2 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|55379214|ref|YP_137064.1| - 4.7e-09 35.4 0.0 6.7e-06 25.0 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|55379214|ref|YP_137064.1| - 1.1e-08 34.4 0.0 7.4e-08 31.7 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|55379214|ref|YP_137064.1| - 2e-08 34.4 0.2 0.0048 17.0 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|55379214|ref|YP_137064.1| - 4.8e-08 32.9 0.0 9.4e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55379214|ref|YP_137064.1| - 5.7e-07 29.7 1.5 0.00055 19.9 0.0 3.0 2 2 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.8 gi|55379214|ref|YP_137064.1| - 5e-05 22.1 0.0 0.011 14.4 0.0 2.6 1 1 1 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|55379214|ref|YP_137064.1| - 5e-05 22.7 0.0 0.00075 18.9 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|55379214|ref|YP_137064.1| - 8.7e-05 22.1 0.0 0.00027 20.5 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|55379214|ref|YP_137064.1| - 8.9e-05 22.5 0.0 0.0002 21.4 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|55379214|ref|YP_137064.1| - 0.00017 21.2 0.0 0.00044 19.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|55379214|ref|YP_137064.1| - 0.0003 21.6 0.6 0.0014 19.3 0.4 2.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|55379214|ref|YP_137064.1| - 0.00058 19.0 0.0 0.094 11.8 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|55379214|ref|YP_137064.1| - 0.00069 19.0 1.1 0.0066 15.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|55379214|ref|YP_137064.1| - 0.00075 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activat PF00158.21 gi|55379214|ref|YP_137064.1| - 0.0008 18.9 0.0 0.032 13.6 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF3253 PF11625.3 gi|55379214|ref|YP_137064.1| - 0.0012 18.6 0.0 0.0091 15.8 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3253) AAA_18 PF13238.1 gi|55379214|ref|YP_137064.1| - 0.0019 18.5 0.0 0.0081 16.4 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_5 PF07728.9 gi|55379214|ref|YP_137064.1| - 0.0031 17.2 0.0 0.027 14.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|55379214|ref|YP_137064.1| - 0.0039 16.6 0.0 0.008 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain PEPCK_ATP PF01293.15 gi|55379214|ref|YP_137064.1| - 0.006 15.1 0.0 0.011 14.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase PhoH PF02562.11 gi|55379214|ref|YP_137064.1| - 0.012 14.8 0.0 0.07 12.3 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.7 gi|55379214|ref|YP_137064.1| - 0.013 15.1 0.0 0.4 10.3 0.0 2.4 2 1 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|55379214|ref|YP_137064.1| - 0.016 14.1 0.0 0.033 13.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|55379214|ref|YP_137064.1| - 0.018 13.9 0.0 0.025 13.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|55379214|ref|YP_137064.1| - 0.021 14.3 0.1 0.088 12.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain ResIII PF04851.10 gi|55379214|ref|YP_137064.1| - 0.026 14.3 0.0 0.061 13.1 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|55379214|ref|YP_137064.1| - 0.033 14.4 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|55379214|ref|YP_137064.1| - 0.035 14.0 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|55379214|ref|YP_137064.1| - 0.037 13.5 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|55379214|ref|YP_137064.1| - 0.038 14.1 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|55379214|ref|YP_137064.1| - 0.049 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|55379214|ref|YP_137064.1| - 0.058 12.8 0.2 7.6 5.9 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_33 PF13671.1 gi|55379214|ref|YP_137064.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55379214|ref|YP_137064.1| - 0.067 12.6 0.8 3.4 7.0 0.3 2.5 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|55379214|ref|YP_137064.1| - 0.084 12.4 0.1 0.44 10.0 0.0 2.2 1 1 1 2 2 2 0 AAA domain SNF2_N PF00176.18 gi|55379214|ref|YP_137064.1| - 0.092 11.5 0.0 0.19 10.5 0.0 1.4 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|55379214|ref|YP_137064.1| - 0.11 11.5 0.0 0.21 10.5 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|55379214|ref|YP_137064.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|55379214|ref|YP_137064.1| - 0.13 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ThiS PF02597.15 gi|55379215|ref|YP_137065.1| - 2.5e-05 24.6 0.3 2.9e-05 24.4 0.2 1.0 1 0 0 1 1 1 1 ThiS family Glyco_hydro_42C PF08533.5 gi|55379215|ref|YP_137065.1| - 0.038 13.4 0.1 0.067 12.7 0.1 1.6 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain Lambda_tail_I PF06805.7 gi|55379215|ref|YP_137065.1| - 0.11 12.3 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Acetyltransf_10 PF13673.1 gi|55379216|ref|YP_137066.1| - 1.5e-10 41.2 0.0 1.9e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55379216|ref|YP_137066.1| - 7.3e-09 35.5 0.1 1.2e-08 34.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|55379216|ref|YP_137066.1| - 4.1e-07 30.0 0.0 6.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55379216|ref|YP_137066.1| - 0.0027 17.5 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|55379216|ref|YP_137066.1| - 0.023 14.4 0.1 0.18 11.5 0.1 2.0 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|55379216|ref|YP_137066.1| - 0.059 13.2 0.0 0.096 12.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pyridox_ox_2 PF12900.2 gi|55379217|ref|YP_137067.1| - 5.5e-19 68.4 0.1 6.1e-19 68.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PGM_PMM_I PF02878.11 gi|55379218|ref|YP_137068.1| - 5.6e-33 113.3 0.0 1e-32 112.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|55379218|ref|YP_137068.1| - 5.1e-24 84.4 0.0 8.9e-24 83.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|55379218|ref|YP_137068.1| - 3.2e-21 75.6 0.4 7.5e-21 74.4 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|55379218|ref|YP_137068.1| - 3.1e-15 55.9 0.6 2e-14 53.3 0.0 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.19 gi|55379219|ref|YP_137069.1| - 3.6e-14 52.8 0.1 4.2e-14 52.6 0.1 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|55379219|ref|YP_137069.1| - 0.0056 17.0 0.2 0.0071 16.7 0.1 1.2 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|55379219|ref|YP_137069.1| - 0.046 14.1 0.1 0.095 13.1 0.1 1.7 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 AIRC PF00731.15 gi|55379220|ref|YP_137070.1| - 4.4e-15 55.2 6.8 6.5e-15 54.6 2.3 2.1 2 0 0 2 2 2 2 AIR carboxylase CBFD_NFYB_HMF PF00808.18 gi|55379221|ref|YP_137071.1| - 0.00031 20.7 0.0 0.00037 20.4 0.0 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF1931 PF09123.6 gi|55379221|ref|YP_137071.1| - 0.00032 20.6 0.8 0.00036 20.4 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|55379221|ref|YP_137071.1| - 0.0006 19.8 0.0 0.00079 19.5 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 SBP_bac_7 PF03480.8 gi|55379221|ref|YP_137071.1| - 0.02 14.0 0.1 0.021 13.9 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 EF-hand_7 PF13499.1 gi|55379221|ref|YP_137071.1| - 0.026 14.6 0.1 0.027 14.5 0.1 1.1 1 0 0 1 1 1 0 EF-hand domain pair Rib_5-P_isom_A PF06026.9 gi|55379222|ref|YP_137072.1| - 1.2e-59 200.5 0.0 1.4e-59 200.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|55379222|ref|YP_137072.1| - 0.00027 20.5 0.3 0.0024 17.5 0.1 2.0 2 0 0 2 2 2 1 DeoR C terminal sensor domain PGM_PMM_I PF02878.11 gi|55379223|ref|YP_137073.1| - 1.7e-32 111.7 0.0 3.1e-32 110.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|55379223|ref|YP_137073.1| - 4.9e-19 68.5 0.5 1.2e-18 67.3 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|55379223|ref|YP_137073.1| - 1.1e-15 57.6 0.0 4.4e-15 55.6 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|55379223|ref|YP_137073.1| - 1.5e-10 40.9 0.2 3.6e-10 39.6 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain KaiC PF06745.8 gi|55379224|ref|YP_137074.1| - 0.011 14.8 0.4 0.014 14.4 0.2 1.1 1 0 0 1 1 1 0 KaiC DUF257 PF03192.8 gi|55379224|ref|YP_137074.1| - 0.13 11.5 0.2 1.6 7.9 0.1 2.1 1 1 1 2 2 2 0 Pyrococcus protein of unknown function, DUF257 DUF2391 PF09622.5 gi|55379225|ref|YP_137075.1| - 0.00032 19.9 2.7 0.00099 18.3 1.9 1.7 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) FixP_N PF14715.1 gi|55379225|ref|YP_137075.1| - 0.037 13.4 0.2 0.079 12.3 0.1 1.5 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP UPRTase PF14681.1 gi|55379226|ref|YP_137076.1| - 1.8e-56 190.6 0.1 2.1e-56 190.4 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|55379226|ref|YP_137076.1| - 4.5e-07 29.6 0.2 7.4e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DctM PF06808.7 gi|55379227|ref|YP_137077.1| - 1.9e-82 277.0 49.7 3.8e-52 177.2 16.3 2.4 2 0 0 2 2 2 2 DctM-like transporters DUF1850 PF08905.6 gi|55379228|ref|YP_137078.1| - 2.1e-21 75.5 0.0 3.2e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1 PF09084.6 gi|55379229|ref|YP_137079.1| - 7e-09 35.5 2.2 8e-09 35.4 0.5 1.8 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|55379229|ref|YP_137079.1| - 4.3e-07 29.5 4.5 7.8e-07 28.7 3.1 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|55379229|ref|YP_137079.1| - 6e-05 22.5 5.1 0.0039 16.6 0.9 2.2 1 1 1 2 2 2 2 NMT1-like family PBP_like PF12727.2 gi|55379229|ref|YP_137079.1| - 0.00013 20.9 0.7 0.00027 19.9 0.5 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|55379229|ref|YP_137079.1| - 0.00037 20.2 5.1 0.0011 18.7 3.5 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|55379229|ref|YP_137079.1| - 0.082 12.0 0.7 0.21 10.7 0.5 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DJ-1_PfpI PF01965.19 gi|55379230|ref|YP_137080.1| - 1e-13 50.9 0.1 3.3e-13 49.3 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|55379230|ref|YP_137080.1| - 0.026 13.7 0.1 0.31 10.3 0.0 2.1 2 0 0 2 2 2 0 Putative amidotransferase PHO4 PF01384.15 gi|55379233|ref|YP_137083.1| - 5.1e-37 127.2 31.7 8.1e-37 126.5 22.0 1.4 1 1 0 1 1 1 1 Phosphate transporter family CstA PF02554.9 gi|55379237|ref|YP_137087.1| - 1.1e-123 412.6 22.0 1.1e-123 412.6 15.3 1.6 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|55379237|ref|YP_137087.1| - 6.9e-28 97.4 4.9 6.9e-28 97.4 3.4 3.7 4 1 0 4 4 4 1 C-terminal domain on CstA (DUF4161) Pox_P21 PF05313.7 gi|55379237|ref|YP_137087.1| - 0.14 11.3 4.9 0.092 11.9 1.3 2.2 2 0 0 2 2 2 0 Poxvirus P21 membrane protein ArsA_ATPase PF02374.10 gi|55379238|ref|YP_137088.1| - 1.5e-70 237.6 0.0 1.8e-70 237.3 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|55379238|ref|YP_137088.1| - 8.7e-13 48.1 0.0 1.8e-12 47.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55379238|ref|YP_137088.1| - 0.00031 20.7 0.0 0.0031 17.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55379238|ref|YP_137088.1| - 0.0036 16.7 0.0 0.0041 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_26 PF13500.1 gi|55379238|ref|YP_137088.1| - 0.022 14.3 0.3 0.083 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|55379238|ref|YP_137088.1| - 0.044 13.1 0.1 0.099 12.0 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.14 gi|55379239|ref|YP_137089.1| - 2.3e-47 160.7 0.3 2.9e-47 160.3 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|55379239|ref|YP_137089.1| - 1.1e-27 95.5 0.0 2.4e-27 94.4 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|55379239|ref|YP_137089.1| - 0.0011 18.4 0.0 0.42 10.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.7 gi|55379239|ref|YP_137089.1| - 0.0069 15.5 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin UPF0079 PF02367.12 gi|55379239|ref|YP_137089.1| - 0.0074 15.9 0.1 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 TrwB_AAD_bind PF10412.4 gi|55379239|ref|YP_137089.1| - 0.0077 14.8 0.1 0.013 14.1 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|55379239|ref|YP_137089.1| - 0.011 15.2 0.1 0.019 14.3 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|55379239|ref|YP_137089.1| - 0.011 15.7 0.1 0.037 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|55379239|ref|YP_137089.1| - 0.023 13.5 0.2 0.045 12.6 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|55379239|ref|YP_137089.1| - 0.026 13.7 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|55379239|ref|YP_137089.1| - 0.026 13.9 0.0 0.061 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|55379239|ref|YP_137089.1| - 0.032 14.3 0.0 0.075 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|55379239|ref|YP_137089.1| - 0.055 13.1 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|55379239|ref|YP_137089.1| - 0.067 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|55379239|ref|YP_137089.1| - 0.077 12.6 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|55379239|ref|YP_137089.1| - 0.083 12.8 0.0 0.29 11.0 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|55379239|ref|YP_137089.1| - 0.09 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|55379239|ref|YP_137089.1| - 0.097 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|55379239|ref|YP_137089.1| - 0.14 12.0 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.5 gi|55379240|ref|YP_137090.1| - 0.00048 20.0 0.7 0.00091 19.1 0.5 1.5 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|55379240|ref|YP_137090.1| - 0.0024 17.6 0.7 0.0033 17.1 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_3 PF14369.1 gi|55379240|ref|YP_137090.1| - 0.0025 17.7 1.0 0.0043 17.0 0.7 1.4 1 0 0 1 1 1 1 zinc-finger zf-ribbon_3 PF13248.1 gi|55379240|ref|YP_137090.1| - 0.0098 15.0 0.5 0.13 11.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|55379240|ref|YP_137090.1| - 0.018 14.3 4.6 2.1 7.7 0.2 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-B_box PF00643.19 gi|55379240|ref|YP_137090.1| - 0.022 14.6 0.1 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 B-box zinc finger FYDLN_acid PF09538.5 gi|55379240|ref|YP_137090.1| - 0.025 15.1 0.6 0.032 14.8 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc-ribbons_6 PF07191.7 gi|55379240|ref|YP_137090.1| - 0.042 13.6 0.3 0.075 12.8 0.2 1.5 1 1 0 1 1 1 0 zinc-ribbons TerY-C PF15616.1 gi|55379240|ref|YP_137090.1| - 0.044 13.7 1.0 0.049 13.5 0.7 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain zinc_ribbon_2 PF13240.1 gi|55379240|ref|YP_137090.1| - 0.044 13.2 0.2 0.51 9.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|55379240|ref|YP_137090.1| - 0.064 13.0 0.4 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein YdjO PF14169.1 gi|55379240|ref|YP_137090.1| - 0.087 12.2 0.6 0.12 11.8 0.4 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO HypA PF01155.14 gi|55379240|ref|YP_137090.1| - 0.14 11.8 2.0 0.21 11.2 1.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|55379240|ref|YP_137090.1| - 0.2 11.1 1.8 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55379240|ref|YP_137090.1| - 0.22 11.3 1.7 1.8 8.4 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|55379240|ref|YP_137090.1| - 0.33 10.7 5.5 0.29 10.9 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|55379240|ref|YP_137090.1| - 0.44 10.0 4.5 2 7.9 1.8 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-dskA_traR PF01258.12 gi|55379240|ref|YP_137090.1| - 0.7 9.6 9.4 9.6 6.0 2.4 2.4 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-IS66 PF13005.2 gi|55379240|ref|YP_137090.1| - 0.76 9.7 5.5 2.4 8.1 1.7 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|55379240|ref|YP_137090.1| - 2.1 8.0 6.0 2 8.1 1.1 2.2 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Polyketide_cyc2 PF10604.4 gi|55379241|ref|YP_137091.1| - 5.4e-07 29.8 2.5 1.7e-06 28.2 1.7 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55379241|ref|YP_137091.1| - 0.076 13.0 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport BRK PF07533.11 gi|55379241|ref|YP_137091.1| - 0.11 12.0 0.3 0.46 9.9 0.1 2.0 2 0 0 2 2 2 0 BRK domain CD20 PF04103.10 gi|55379243|ref|YP_137092.1| - 0.34 10.8 7.5 0.067 13.1 2.4 1.7 2 0 0 2 2 2 0 CD20-like family Cupin_2 PF07883.6 gi|55379244|ref|YP_137094.1| - 2.7e-13 49.1 0.1 3.5e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|55379244|ref|YP_137094.1| - 0.00038 20.0 0.0 0.00046 19.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|55379244|ref|YP_137094.1| - 0.00079 19.1 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.2 gi|55379244|ref|YP_137094.1| - 0.0044 16.8 0.0 0.0056 16.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.7 gi|55379244|ref|YP_137094.1| - 0.0071 15.7 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|55379244|ref|YP_137094.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_1 PF00190.17 gi|55379244|ref|YP_137094.1| - 0.026 13.9 0.0 0.036 13.4 0.0 1.3 1 1 0 1 1 1 0 Cupin DUF1255 PF06865.6 gi|55379244|ref|YP_137094.1| - 0.034 14.4 0.0 0.04 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) DUF21 PF01595.15 gi|55379245|ref|YP_137095.1| - 1.1e-53 181.2 2.3 1.6e-53 180.7 1.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|55379245|ref|YP_137095.1| - 7.2e-21 73.7 2.4 1.8e-20 72.4 1.7 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|55379245|ref|YP_137095.1| - 1.1e-18 66.7 7.4 7.2e-10 38.4 0.2 3.0 3 0 0 3 3 3 2 CBS domain GST_N_3 PF13417.1 gi|55379246|ref|YP_137096.1| - 3.8e-15 55.8 0.0 4.4e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|55379246|ref|YP_137096.1| - 1.3e-13 50.7 0.0 1.7e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|55379246|ref|YP_137096.1| - 3e-12 46.3 0.0 3.5e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|55379246|ref|YP_137096.1| - 0.0028 17.8 0.0 0.0033 17.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|55379246|ref|YP_137096.1| - 0.0086 16.3 0.0 0.011 16.0 0.0 1.2 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) PqqD PF05402.7 gi|55379246|ref|YP_137096.1| - 0.04 13.9 0.0 14 5.7 0.0 2.6 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) AhpC-TSA PF00578.16 gi|55379247|ref|YP_137097.1| - 2.5e-14 53.0 0.0 3e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55379247|ref|YP_137097.1| - 3.3e-05 23.4 0.0 0.00014 21.3 0.0 1.8 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.13 gi|55379248|ref|YP_137098.1| - 6.2e-49 165.6 0.0 7.3e-49 165.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination PDDEXK_1 PF12705.2 gi|55379249|ref|YP_137099.1| - 1.3 8.3 5.8 8.1 5.7 0.4 2.4 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily CCG PF02754.11 gi|55379251|ref|YP_137101.1| - 1.4e-18 66.6 0.0 2e-12 46.9 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|55379251|ref|YP_137101.1| - 1.8e-11 43.8 6.7 2.5e-11 43.4 3.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|55379251|ref|YP_137101.1| - 5.5e-11 42.5 5.5 5.5e-11 42.5 3.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55379251|ref|YP_137101.1| - 3.7e-10 38.9 11.2 3.8e-05 23.1 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|55379251|ref|YP_137101.1| - 6.9e-08 32.1 13.9 1e-06 28.4 8.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55379251|ref|YP_137101.1| - 8.7e-08 32.4 9.5 0.0023 18.3 0.4 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55379251|ref|YP_137101.1| - 1.5e-07 31.6 21.6 3.9e-07 30.3 7.1 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55379251|ref|YP_137101.1| - 2.1e-06 27.2 18.5 0.00024 20.8 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|55379251|ref|YP_137101.1| - 1.8e-05 24.9 8.7 1.8e-05 24.9 6.0 2.7 3 1 2 5 5 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55379251|ref|YP_137101.1| - 2e-05 24.2 22.0 0.00051 19.8 2.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|55379251|ref|YP_137101.1| - 0.00025 20.8 11.1 0.032 14.0 0.3 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|55379251|ref|YP_137101.1| - 0.0012 19.5 13.7 0.011 16.4 8.6 2.7 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|55379251|ref|YP_137101.1| - 0.0022 18.1 19.7 0.0092 16.2 1.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55379251|ref|YP_137101.1| - 0.0057 17.1 7.2 0.51 10.9 0.4 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|55379251|ref|YP_137101.1| - 0.081 13.5 24.8 0.16 12.5 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|55379251|ref|YP_137101.1| - 0.31 11.4 15.3 0.74 10.2 0.4 3.3 4 0 0 4 4 2 0 4Fe-4S single cluster domain DUF202 PF02656.10 gi|55379251|ref|YP_137101.1| - 0.78 9.9 3.1 8.5 6.6 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF202) TrkA_N PF02254.13 gi|55379252|ref|YP_137102.1| - 1.6e-27 95.8 3.4 2.2e-27 95.3 2.3 1.2 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|55379252|ref|YP_137102.1| - 3.9e-07 30.2 0.5 6.2e-07 29.6 0.3 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|55379252|ref|YP_137102.1| - 0.0003 19.8 0.7 0.00048 19.2 0.5 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|55379252|ref|YP_137102.1| - 0.00075 19.1 0.4 0.0012 18.4 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|55379252|ref|YP_137102.1| - 0.0026 17.6 0.2 0.0049 16.7 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|55379252|ref|YP_137102.1| - 0.007 15.7 0.1 0.011 15.0 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Thi4 PF01946.12 gi|55379252|ref|YP_137102.1| - 0.0085 15.2 0.1 0.018 14.1 0.0 1.6 1 0 0 1 1 1 1 Thi4 family XdhC_C PF13478.1 gi|55379252|ref|YP_137102.1| - 0.016 15.5 0.5 0.12 12.7 0.2 2.2 2 1 0 2 2 2 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.16 gi|55379252|ref|YP_137102.1| - 0.019 14.8 0.5 0.07 12.9 0.4 1.9 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Sensor PF13796.1 gi|55379252|ref|YP_137102.1| - 0.024 14.2 6.1 0.039 13.5 4.2 1.2 1 0 0 1 1 1 0 Putative sensor 2-Hacid_dh_C PF02826.14 gi|55379252|ref|YP_137102.1| - 0.077 12.1 0.1 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MoCF_biosynth PF00994.19 gi|55379254|ref|YP_137104.1| - 2.3e-31 108.1 0.3 6.4e-31 106.7 0.1 1.7 2 0 0 2 2 2 1 Probable molybdopterin binding domain ALAD PF00490.16 gi|55379255|ref|YP_137105.1| - 1.2e-140 467.9 0.0 1.4e-140 467.8 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF4129 PF13559.1 gi|55379256|ref|YP_137106.1| - 1.5e-10 40.8 9.6 1.5e-10 40.8 6.6 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF58 PF01882.13 gi|55379257|ref|YP_137107.1| - 1.6e-17 63.3 0.4 4e-17 62.1 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|55379257|ref|YP_137107.1| - 7.5e-08 32.3 0.8 7.5e-08 32.3 0.6 2.9 3 0 0 3 3 3 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|55379257|ref|YP_137107.1| - 0.00024 21.1 0.0 0.00056 19.9 0.0 1.5 1 0 0 1 1 1 1 CARDB NPCBM_assoc PF10633.4 gi|55379257|ref|YP_137107.1| - 0.00092 19.2 2.6 0.0034 17.4 0.2 2.7 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|55379257|ref|YP_137107.1| - 0.0077 15.4 0.0 0.02 14.0 0.0 1.6 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) Toprim_3 PF13362.1 gi|55379257|ref|YP_137107.1| - 0.011 15.9 0.2 5.6 7.2 0.1 3.3 3 0 0 3 3 3 0 Toprim domain Nepo_coat PF03391.10 gi|55379258|ref|YP_137108.1| - 2.7 7.2 7.9 0.31 10.3 1.2 2.0 1 1 1 2 2 2 0 Nepovirus coat protein, central domain HATPase_c PF02518.21 gi|55379259|ref|YP_137109.1| - 2.1e-17 62.8 0.0 3.9e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55379259|ref|YP_137109.1| - 2.1e-14 53.4 1.3 4.5e-06 26.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|55379259|ref|YP_137109.1| - 4.8e-13 48.8 0.0 5.2e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|55379259|ref|YP_137109.1| - 1.2e-12 48.1 0.0 2.1e-05 24.8 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|55379259|ref|YP_137109.1| - 2.9e-08 33.7 0.0 0.00036 20.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|55379259|ref|YP_137109.1| - 3.2e-05 23.7 0.4 9.4e-05 22.1 0.1 1.9 1 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55379259|ref|YP_137109.1| - 3.9e-05 23.3 0.1 0.00029 20.5 0.0 2.3 2 0 0 2 2 2 1 PAS domain MCPsignal PF00015.16 gi|55379260|ref|YP_137110.1| - 2.5e-37 128.4 45.1 3e-37 128.2 21.7 2.3 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.4 gi|55379260|ref|YP_137110.1| - 0.004 17.2 9.1 9.1 6.4 0.2 4.7 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|55379260|ref|YP_137110.1| - 0.0096 15.7 13.3 0.38 10.5 0.8 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) IncA PF04156.9 gi|55379260|ref|YP_137110.1| - 0.014 15.0 9.3 0.073 12.6 1.4 3.0 1 1 0 2 2 2 0 IncA protein NPV_P10 PF05531.7 gi|55379260|ref|YP_137110.1| - 0.015 15.5 19.3 0.44 10.8 0.9 4.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein PAXNEB PF05625.6 gi|55379260|ref|YP_137110.1| - 0.17 10.7 0.0 0.28 9.9 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein DASH_Dad2 PF08654.5 gi|55379260|ref|YP_137110.1| - 0.2 11.6 9.5 0.77 9.7 1.4 3.3 2 1 1 3 3 3 0 DASH complex subunit Dad2 DUF948 PF06103.6 gi|55379260|ref|YP_137110.1| - 0.22 11.3 14.4 0.24 11.2 1.8 3.6 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.6 gi|55379260|ref|YP_137110.1| - 0.26 8.7 6.2 0.48 7.8 4.3 1.5 1 1 0 1 1 1 0 Prominin Transposase_22 PF02994.9 gi|55379260|ref|YP_137110.1| - 0.29 9.5 3.4 0.14 10.6 0.8 1.5 2 0 0 2 2 2 0 L1 transposable element APG6 PF04111.7 gi|55379260|ref|YP_137110.1| - 0.51 9.3 7.0 0.74 8.7 0.8 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Syntaxin PF00804.20 gi|55379260|ref|YP_137110.1| - 0.52 10.4 10.4 0.87 9.7 0.3 3.3 3 1 1 4 4 3 0 Syntaxin Spc7 PF08317.6 gi|55379260|ref|YP_137110.1| - 0.54 8.8 7.2 2.9 6.4 0.8 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein AAA_13 PF13166.1 gi|55379260|ref|YP_137110.1| - 0.76 8.1 8.4 3.2 6.0 5.8 1.9 1 1 0 1 1 1 0 AAA domain Laminin_II PF06009.7 gi|55379260|ref|YP_137110.1| - 0.85 9.3 23.2 0.44 10.2 0.3 4.3 2 2 1 3 3 3 0 Laminin Domain II Not3 PF04065.10 gi|55379260|ref|YP_137110.1| - 0.86 8.8 4.1 2.2 7.5 0.5 2.3 1 1 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Reo_sigmaC PF04582.7 gi|55379260|ref|YP_137110.1| - 1.1 8.3 21.1 2.6 7.1 4.7 2.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein COG2 PF06148.6 gi|55379260|ref|YP_137110.1| - 1.1 9.0 9.9 9 6.1 0.4 3.8 2 2 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 KaiC PF06745.8 gi|55379260|ref|YP_137110.1| - 1.2 8.1 10.1 0.62 9.1 0.1 3.6 2 2 2 4 4 4 0 KaiC DUF4200 PF13863.1 gi|55379260|ref|YP_137110.1| - 2.1 8.3 6.7 19 5.2 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF3584 PF12128.3 gi|55379260|ref|YP_137110.1| - 2.2 5.5 18.7 0.063 10.6 5.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.17 gi|55379260|ref|YP_137110.1| - 2.6 8.1 13.3 10 6.1 0.8 4.3 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.7 gi|55379260|ref|YP_137110.1| - 6 6.6 20.9 0.61 9.9 1.3 3.7 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ammonium_transp PF00909.16 gi|55379261|ref|YP_137111.1| - 6.3e-99 331.1 43.8 7.2e-99 330.9 30.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.6 gi|55379261|ref|YP_137111.1| - 0.1 12.1 5.7 0.54 9.8 0.2 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.17 gi|55379262|ref|YP_137112.1| - 1.5e-32 112.0 0.1 1.8e-32 111.8 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II HisG_C PF08029.6 gi|55379262|ref|YP_137112.1| - 0.096 12.6 0.3 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain HTH_24 PF13412.1 gi|55379263|ref|YP_137113.1| - 1.7e-14 52.9 0.0 9.4e-14 50.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55379263|ref|YP_137113.1| - 5.1e-12 45.1 2.1 9e-12 44.3 1.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|55379263|ref|YP_137113.1| - 3.5e-11 42.6 0.2 6.7e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|55379263|ref|YP_137113.1| - 3.8e-06 26.4 0.4 6.2e-06 25.7 0.3 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55379263|ref|YP_137113.1| - 8.8e-05 22.1 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55379263|ref|YP_137113.1| - 0.0001 21.8 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|55379263|ref|YP_137113.1| - 0.00031 20.2 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|55379263|ref|YP_137113.1| - 0.00056 19.6 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|55379263|ref|YP_137113.1| - 0.0009 18.7 0.1 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|55379263|ref|YP_137113.1| - 0.0018 17.3 0.2 0.0038 16.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|55379263|ref|YP_137113.1| - 0.0045 16.5 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|55379263|ref|YP_137113.1| - 0.0051 16.5 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|55379263|ref|YP_137113.1| - 0.013 15.7 0.2 0.075 13.3 0.0 2.4 3 1 1 4 4 3 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|55379263|ref|YP_137113.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Trp_repressor PF01371.14 gi|55379263|ref|YP_137113.1| - 0.017 15.0 0.1 0.044 13.7 0.0 1.7 2 0 0 2 2 2 0 Trp repressor protein DUF2250 PF10007.4 gi|55379263|ref|YP_137113.1| - 0.022 14.6 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|55379263|ref|YP_137113.1| - 0.022 14.4 1.2 0.04 13.6 0.0 2.0 3 0 0 3 3 2 0 MarR family HTH_28 PF13518.1 gi|55379263|ref|YP_137113.1| - 0.024 14.6 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|55379263|ref|YP_137113.1| - 0.037 14.0 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Crp PF00325.15 gi|55379263|ref|YP_137113.1| - 0.048 13.1 0.1 0.1 12.1 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_9 PF08221.6 gi|55379263|ref|YP_137113.1| - 0.049 13.5 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|55379263|ref|YP_137113.1| - 0.063 12.7 0.1 0.25 10.8 0.0 2.0 3 0 0 3 3 3 0 TFIIE alpha subunit HTH_7 PF02796.10 gi|55379263|ref|YP_137113.1| - 0.082 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GYD PF08734.6 gi|55379263|ref|YP_137113.1| - 0.095 12.4 0.3 0.28 10.9 0.1 1.8 1 1 0 1 1 1 0 GYD domain HTH_CodY PF08222.6 gi|55379263|ref|YP_137113.1| - 0.096 12.0 0.1 0.2 11.0 0.1 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain RepL PF05732.6 gi|55379263|ref|YP_137113.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_10 PF04967.7 gi|55379263|ref|YP_137113.1| - 0.13 11.8 0.1 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain CheC PF04509.7 gi|55379264|ref|YP_137114.1| - 4.7e-12 45.4 0.4 8.3e-12 44.6 0.3 1.4 1 0 0 1 1 1 1 CheC-like family CheX PF13690.1 gi|55379264|ref|YP_137114.1| - 0.00077 19.2 0.1 0.0012 18.6 0.1 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX FliM PF02154.10 gi|55379264|ref|YP_137114.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Flagellar motor switch protein FliM Peripla_BP_6 PF13458.1 gi|55379265|ref|YP_137115.1| - 3.6e-59 200.8 7.4 4.7e-59 200.4 5.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55379265|ref|YP_137115.1| - 1.6e-25 89.6 0.4 2.3e-25 89.1 0.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|55379265|ref|YP_137115.1| - 3.2e-07 29.4 0.5 4.5e-07 28.9 0.3 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region RNA_pol_Rpb2_45 PF10385.4 gi|55379265|ref|YP_137115.1| - 0.041 13.7 0.1 0.1 12.4 0.1 1.7 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain HTH_39 PF14090.1 gi|55379265|ref|YP_137115.1| - 0.15 11.5 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NIR_SIR PF01077.17 gi|55379266|ref|YP_137116.1| - 3e-45 153.4 0.1 3e-28 98.1 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|55379266|ref|YP_137116.1| - 1.8e-36 123.5 0.0 9e-17 60.4 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|55379266|ref|YP_137116.1| - 0.13 12.1 0.2 1.6 8.5 0.0 2.3 2 0 0 2 2 2 0 DGC domain MFS_1 PF07690.11 gi|55379267|ref|YP_137117.1| - 2e-30 105.7 45.1 2e-30 105.7 31.3 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|55379267|ref|YP_137117.1| - 0.00019 21.1 0.9 0.00019 21.1 0.6 2.6 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|55379267|ref|YP_137117.1| - 4.5 5.7 34.6 1.5e+02 0.7 24.0 2.8 1 1 0 1 1 1 0 Sugar (and other) transporter Molybdopterin PF00384.17 gi|55379268|ref|YP_137118.1| - 3.5e-59 200.6 0.0 4.4e-59 200.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55379268|ref|YP_137118.1| - 9.7e-18 64.0 0.0 2.4e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|55379268|ref|YP_137118.1| - 1.5e-08 34.3 1.3 2.8e-08 33.4 0.3 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Aminotran_3 PF00202.16 gi|55379269|ref|YP_137119.1| - 1.8e-68 230.9 0.0 2.3e-68 230.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|55379269|ref|YP_137119.1| - 0.0081 15.1 0.0 0.0092 14.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Pribosyltran_N PF13793.1 gi|55379271|ref|YP_137121.1| - 6.2e-24 83.9 0.0 8.8e-23 80.2 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|55379271|ref|YP_137121.1| - 2e-10 40.4 0.3 5.6e-10 39.0 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|55379271|ref|YP_137121.1| - 3.3e-07 30.2 0.6 1.1e-06 28.5 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|55379271|ref|YP_137121.1| - 8.6e-05 21.8 0.0 0.00017 20.9 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|55379271|ref|YP_137121.1| - 0.00031 20.0 1.2 0.053 12.8 0.1 2.5 2 1 1 3 3 3 2 Phosphoribosyl transferase Aldedh PF00171.17 gi|55379272|ref|YP_137122.1| - 1e-152 508.7 3.4 1.2e-152 508.5 2.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Na_sulph_symp PF00939.14 gi|55379273|ref|YP_137123.1| - 5.7e-25 88.1 35.1 6.8e-25 87.8 24.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|55379273|ref|YP_137123.1| - 0.0002 20.0 22.7 0.0002 20.0 15.7 2.5 2 1 0 2 2 2 1 Citrate transporter MCPsignal PF00015.16 gi|55379274|ref|YP_137124.1| - 5.1e-42 143.8 55.0 2e-38 132.0 25.8 3.0 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|55379274|ref|YP_137124.1| - 0.00015 21.5 37.7 0.11 12.2 2.3 4.2 1 1 3 4 4 4 3 Laminin Domain II Reo_sigmaC PF04582.7 gi|55379274|ref|YP_137124.1| - 0.00048 19.4 34.0 0.0024 17.1 7.2 3.0 1 1 2 3 3 3 2 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|55379274|ref|YP_137124.1| - 0.0013 18.5 37.8 0.7 9.7 5.6 5.0 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|55379274|ref|YP_137124.1| - 0.0067 16.5 32.2 1.3 9.2 0.4 5.4 1 1 4 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|55379274|ref|YP_137124.1| - 0.016 13.6 31.2 0.21 9.9 8.0 2.1 1 1 0 2 2 2 0 AAA domain V_ATPase_I PF01496.14 gi|55379274|ref|YP_137124.1| - 0.021 12.6 17.0 0.019 12.8 4.0 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|55379274|ref|YP_137124.1| - 0.025 14.3 28.6 0.95 9.2 1.7 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF869 PF05911.6 gi|55379274|ref|YP_137124.1| - 0.027 12.7 26.8 0.042 12.0 18.6 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF3584 PF12128.3 gi|55379274|ref|YP_137124.1| - 0.029 11.7 27.9 0.061 10.6 6.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Shugoshin_N PF07558.6 gi|55379274|ref|YP_137124.1| - 0.051 13.2 1.5 0.34 10.6 0.2 2.5 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region Lipoprotein_7 PF01540.11 gi|55379274|ref|YP_137124.1| - 0.06 12.4 23.0 1.1 8.2 11.2 2.2 1 1 1 2 2 2 0 Adhesin lipoprotein DASH_Dam1 PF08653.5 gi|55379274|ref|YP_137124.1| - 0.077 12.7 6.0 1.9 8.2 0.0 5.0 4 1 3 7 7 6 0 DASH complex subunit Dam1 Syntaxin PF00804.20 gi|55379274|ref|YP_137124.1| - 0.086 13.0 31.2 4.2 7.5 6.0 4.4 1 1 3 4 4 4 0 Syntaxin LPP PF04728.8 gi|55379274|ref|YP_137124.1| - 0.17 11.6 0.1 0.17 11.6 0.1 4.9 4 2 1 5 5 4 0 Lipoprotein leucine-zipper DUF848 PF05852.6 gi|55379274|ref|YP_137124.1| - 0.23 11.3 31.4 0.05 13.4 1.4 4.0 2 2 1 4 4 4 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4559 PF15112.1 gi|55379274|ref|YP_137124.1| - 0.25 10.4 24.4 0.2 10.7 4.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Spc7 PF08317.6 gi|55379274|ref|YP_137124.1| - 0.27 9.8 31.6 0.28 9.7 8.4 2.9 1 1 2 3 3 3 0 Spc7 kinetochore protein Sec5 PF15469.1 gi|55379274|ref|YP_137124.1| - 0.35 10.5 11.0 0.058 13.1 1.8 3.0 1 1 2 3 3 3 0 Exocyst complex component Sec5 DUF3450 PF11932.3 gi|55379274|ref|YP_137124.1| - 0.35 10.0 37.7 1.6 7.9 6.8 3.8 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) EzrA PF06160.7 gi|55379274|ref|YP_137124.1| - 0.42 8.7 28.9 0.22 9.6 1.9 3.2 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|55379274|ref|YP_137124.1| - 0.43 10.8 37.5 0.56 10.4 2.0 5.5 2 2 2 4 4 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|55379274|ref|YP_137124.1| - 0.47 10.8 27.0 3.1 8.2 2.2 4.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Filo_VP35 PF02097.10 gi|55379274|ref|YP_137124.1| - 0.66 9.1 26.4 0.51 9.4 3.7 3.4 1 1 1 3 3 3 0 Filoviridae VP35 DUF4618 PF15397.1 gi|55379274|ref|YP_137124.1| - 0.7 9.1 22.4 0.15 11.3 3.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4618) GAS PF13851.1 gi|55379274|ref|YP_137124.1| - 0.88 8.7 20.8 2 7.5 1.5 3.8 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|55379274|ref|YP_137124.1| - 1 9.4 25.7 1.7 8.7 1.8 4.2 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family RPW8 PF05659.6 gi|55379274|ref|YP_137124.1| - 1.3 8.5 6.9 9.8 5.7 0.2 3.5 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Prominin PF05478.6 gi|55379274|ref|YP_137124.1| - 1.4 6.3 24.1 2.2 5.7 6.1 2.4 1 1 1 2 2 2 0 Prominin CENP-F_leu_zip PF10473.4 gi|55379274|ref|YP_137124.1| - 1.5 8.6 28.2 6.3 6.6 8.4 3.9 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Bacillus_HBL PF05791.6 gi|55379274|ref|YP_137124.1| - 1.9 7.8 19.2 2.8 7.2 0.5 3.5 3 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) IFT57 PF10498.4 gi|55379274|ref|YP_137124.1| - 1.9 7.1 26.9 1 8.0 3.8 2.7 1 1 1 3 3 3 0 Intra-flagellar transport protein 57 Nup54 PF13874.1 gi|55379274|ref|YP_137124.1| - 2.1 8.0 21.0 0.76 9.4 2.2 3.5 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 DUF972 PF06156.8 gi|55379274|ref|YP_137124.1| - 2.3 8.5 19.7 5.7 7.3 0.3 4.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF904 PF06005.7 gi|55379274|ref|YP_137124.1| - 2.4 8.5 20.5 17 5.8 0.3 4.7 3 1 1 4 4 3 0 Protein of unknown function (DUF904) SNARE PF05739.14 gi|55379274|ref|YP_137124.1| - 2.4 7.9 26.9 0.052 13.2 2.2 5.8 3 2 1 6 6 6 0 SNARE domain DUF883 PF05957.8 gi|55379274|ref|YP_137124.1| - 2.7 8.4 35.0 0.4 11.1 4.2 5.0 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF883) DUF4200 PF13863.1 gi|55379274|ref|YP_137124.1| - 3 7.8 20.0 1.1 9.2 3.1 3.3 2 2 0 2 2 2 0 Domain of unknown function (DUF4200) DASH_Dad2 PF08654.5 gi|55379274|ref|YP_137124.1| - 3.3 7.7 22.4 4 7.4 1.3 4.6 1 1 3 4 4 4 0 DASH complex subunit Dad2 Seryl_tRNA_N PF02403.17 gi|55379274|ref|YP_137124.1| - 3.6 7.6 26.7 2.2 8.3 1.2 4.8 1 1 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain FH2 PF02181.18 gi|55379274|ref|YP_137124.1| - 3.7 6.3 17.0 1.1 8.0 2.9 2.8 1 1 1 2 2 2 0 Formin Homology 2 Domain APG17 PF04108.7 gi|55379274|ref|YP_137124.1| - 3.8 6.2 23.5 5.7 5.6 5.7 3.1 1 1 0 2 2 2 0 Autophagy protein Apg17 CorA PF01544.13 gi|55379274|ref|YP_137124.1| - 3.8 6.4 20.3 1.1 8.2 0.3 3.1 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein ING PF12998.2 gi|55379274|ref|YP_137124.1| - 4.2 7.6 18.8 2.6 8.3 1.8 3.5 1 1 2 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Ded_cyto PF06920.8 gi|55379274|ref|YP_137124.1| - 4.3 6.5 8.6 0.75 9.0 0.5 3.0 2 2 0 2 2 2 0 Dedicator of cytokinesis DUF2120 PF09893.4 gi|55379274|ref|YP_137124.1| - 5.2 6.9 20.9 0.081 12.8 0.8 3.8 1 1 3 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2120) Mod_r PF07200.8 gi|55379274|ref|YP_137124.1| - 5.3 6.9 21.5 4.3 7.2 1.3 3.9 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Sec34 PF04136.10 gi|55379274|ref|YP_137124.1| - 5.4 6.7 17.3 17 5.0 1.7 4.4 2 2 1 3 3 3 0 Sec34-like family YjcZ PF13990.1 gi|55379274|ref|YP_137124.1| - 5.6 6.0 20.3 1.1 8.3 0.9 3.4 2 2 1 3 3 3 0 YjcZ-like protein HAP1_N PF04849.8 gi|55379274|ref|YP_137124.1| - 6.2 5.6 26.2 1.2 7.9 5.7 3.3 1 1 1 3 3 3 0 HAP1 N-terminal conserved region Sipho_Gp157 PF05565.6 gi|55379274|ref|YP_137124.1| - 6.8 6.2 28.0 0.39 10.2 1.8 4.0 2 2 2 4 4 4 0 Siphovirus Gp157 DUF16 PF01519.11 gi|55379274|ref|YP_137124.1| - 8.1 6.7 22.5 0.17 12.1 2.1 3.6 1 1 1 3 3 3 0 Protein of unknown function DUF16 Tropomyosin PF00261.15 gi|55379274|ref|YP_137124.1| - 8.9 5.3 35.3 8 5.4 18.1 3.5 1 1 1 2 2 2 0 Tropomyosin DivIVA PF05103.8 gi|55379274|ref|YP_137124.1| - 8.9 6.3 38.9 0.26 11.3 0.7 4.2 2 2 1 3 3 3 0 DivIVA protein tRNA-synt_1 PF00133.17 gi|55379275|ref|YP_137125.1| - 2.4e-175 584.0 2.0 3.2e-175 583.5 1.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|55379275|ref|YP_137125.1| - 2.3e-30 105.3 0.0 4.7e-30 104.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|55379275|ref|YP_137125.1| - 2.5e-28 98.8 1.8 1e-11 44.1 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|55379275|ref|YP_137125.1| - 0.0014 17.8 0.1 0.27 10.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|55379275|ref|YP_137125.1| - 0.0014 17.9 0.0 0.0055 16.0 0.0 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 UDG PF03167.14 gi|55379276|ref|YP_137126.1| - 4.5e-34 117.1 0.0 6.2e-34 116.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HIT PF01230.18 gi|55379277|ref|YP_137127.1| - 5.9e-27 94.0 0.0 5.9e-26 90.8 0.0 1.9 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|55379277|ref|YP_137127.1| - 3.4e-14 53.0 0.0 4.3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|55379277|ref|YP_137127.1| - 0.011 15.4 0.1 0.018 14.6 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 ESX-1_EspG PF14011.1 gi|55379277|ref|YP_137127.1| - 0.055 12.7 0.2 0.065 12.4 0.2 1.1 1 0 0 1 1 1 0 EspG family AAA_31 PF13614.1 gi|55379278|ref|YP_137128.1| - 1.2e-08 35.0 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|55379278|ref|YP_137128.1| - 1.5e-05 24.5 0.1 1.8e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|55379278|ref|YP_137128.1| - 2.6e-05 23.4 0.7 0.071 12.1 0.2 2.1 2 0 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|55379278|ref|YP_137128.1| - 6.8e-05 22.3 1.0 0.16 11.2 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein Usp PF00582.21 gi|55379279|ref|YP_137129.1| - 0.00014 22.0 2.2 0.00033 20.8 1.5 1.6 1 1 0 1 1 1 1 Universal stress protein family RNase_H_2 PF13482.1 gi|55379280|ref|YP_137130.1| - 5.8e-15 55.4 0.0 6.3e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 RNase_H superfamily zf-dskA_traR PF01258.12 gi|55379281|ref|YP_137131.1| - 0.021 14.5 0.1 2 8.2 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.7 gi|55379281|ref|YP_137131.1| - 0.025 14.3 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|55379281|ref|YP_137131.1| - 0.026 14.4 2.1 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|55379281|ref|YP_137131.1| - 0.054 13.1 5.8 0.37 10.5 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|55379281|ref|YP_137131.1| - 0.12 12.2 0.8 0.29 10.9 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|55379281|ref|YP_137131.1| - 0.17 11.9 0.8 6.3 6.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|55379281|ref|YP_137131.1| - 0.36 10.0 2.5 3.8 6.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|55379281|ref|YP_137131.1| - 0.51 9.5 2.7 9.2 5.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|55379281|ref|YP_137131.1| - 3.8 7.5 6.6 57 3.7 4.6 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3006 PF11213.3 gi|55379282|ref|YP_137132.1| - 1.1e-16 60.3 2.5 1.3e-16 60.1 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) LTD PF00932.14 gi|55379283|ref|YP_137133.1| - 1.5e-17 63.7 3.0 1.5e-17 63.7 2.0 2.7 2 0 0 2 2 2 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|55379283|ref|YP_137133.1| - 9.1e-14 51.5 2.2 2.2e-13 50.2 1.5 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55379283|ref|YP_137133.1| - 0.00033 20.2 0.1 0.00062 19.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Rhomboid PF01694.17 gi|55379284|ref|YP_137134.1| - 4.5e-19 68.9 13.1 7.3e-19 68.2 9.1 1.3 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.5 gi|55379284|ref|YP_137134.1| - 4.8e-05 23.6 0.0 0.00012 22.3 0.0 1.7 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) DUF123 PF01986.11 gi|55379285|ref|YP_137135.1| - 2.1e-27 95.1 0.0 2.8e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA-synt_1 PF00133.17 gi|55379286|ref|YP_137136.1| - 4e-66 223.2 0.0 6.4e-26 90.5 0.1 5.0 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|55379286|ref|YP_137136.1| - 1.3e-53 181.1 0.0 2.1e-53 180.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|55379286|ref|YP_137136.1| - 3.3e-35 121.4 0.0 1.7e-26 92.7 0.0 4.0 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|55379286|ref|YP_137136.1| - 3.3e-13 49.6 0.0 7.8e-13 48.4 0.0 1.6 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|55379286|ref|YP_137136.1| - 0.00071 18.3 0.0 0.051 12.2 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|55379286|ref|YP_137136.1| - 0.012 14.7 0.0 3 6.8 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|55379286|ref|YP_137136.1| - 0.14 11.9 4.3 5.4 6.9 0.2 2.8 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|55379286|ref|YP_137136.1| - 0.31 10.7 1.9 1.1 9.0 0.0 2.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|55379286|ref|YP_137136.1| - 0.45 9.8 9.8 1.8 7.9 0.1 4.0 4 0 0 4 4 4 0 TFIIB zinc-binding BPD_transp_2 PF02653.11 gi|55379287|ref|YP_137137.1| - 2.7e-36 124.9 33.8 2.7e-36 124.9 23.5 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55379288|ref|YP_137138.1| - 4.1e-49 166.9 32.4 4.1e-49 166.9 22.5 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4574 PF15141.1 gi|55379288|ref|YP_137138.1| - 0.2 11.3 0.4 0.58 9.9 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4574) DUF4257 PF14074.1 gi|55379288|ref|YP_137138.1| - 8.2 6.1 10.6 1.4 8.6 2.3 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4257) ABC_tran PF00005.22 gi|55379289|ref|YP_137139.1| - 9.4e-07 29.2 0.0 1.4e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_tran PF00005.22 gi|55379290|ref|YP_137140.1| - 1.7e-31 109.3 0.4 3.1e-29 102.0 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|55379290|ref|YP_137140.1| - 1.9e-12 47.7 0.0 3e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|55379290|ref|YP_137140.1| - 3.1e-06 26.4 0.0 0.0052 15.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain Bac_DnaA PF00308.13 gi|55379290|ref|YP_137140.1| - 0.00016 21.3 0.5 0.00065 19.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_29 PF13555.1 gi|55379290|ref|YP_137140.1| - 0.0017 17.8 0.0 0.0043 16.5 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|55379290|ref|YP_137140.1| - 0.0018 17.5 0.0 1.4 8.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|55379290|ref|YP_137140.1| - 0.0041 17.4 0.0 0.005 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55379290|ref|YP_137140.1| - 0.0055 16.8 0.5 0.053 13.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|55379290|ref|YP_137140.1| - 0.0062 16.4 0.0 3.5 7.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|55379290|ref|YP_137140.1| - 0.0071 15.5 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|55379290|ref|YP_137140.1| - 0.0071 15.9 0.3 0.13 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|55379290|ref|YP_137140.1| - 0.0092 15.4 0.6 0.12 11.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|55379290|ref|YP_137140.1| - 0.0095 15.3 0.2 0.38 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|55379290|ref|YP_137140.1| - 0.023 14.6 0.1 0.084 12.8 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|55379290|ref|YP_137140.1| - 0.037 14.0 0.0 0.17 11.8 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|55379290|ref|YP_137140.1| - 0.054 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PduV-EutP PF10662.4 gi|55379290|ref|YP_137140.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|55379290|ref|YP_137140.1| - 0.12 12.1 0.1 2.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Part of AAA domain AAA_13 PF13166.1 gi|55379290|ref|YP_137140.1| - 0.19 10.1 0.0 0.26 9.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain Bmp PF02608.9 gi|55379291|ref|YP_137141.1| - 5.1e-61 206.0 5.7 6.9e-61 205.6 3.9 1.1 1 0 0 1 1 1 1 Basic membrane protein TPP_enzyme_M PF00205.17 gi|55379291|ref|YP_137141.1| - 0.05 13.3 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain PHO4 PF01384.15 gi|55379292|ref|YP_137142.1| - 4.7e-32 110.9 30.5 7.5e-32 110.2 21.1 1.3 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|55379293|ref|YP_137143.1| - 1.1e-27 96.9 2.4 1.2e-27 96.8 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family GFO_IDH_MocA PF01408.17 gi|55379293|ref|YP_137143.1| - 0.0012 19.3 0.0 0.0015 19.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold MRFAP1 PF15155.1 gi|55379293|ref|YP_137143.1| - 0.032 14.5 0.3 0.048 13.9 0.2 1.3 1 0 0 1 1 1 0 MORF4 family-associated protein1 IMP_cyclohyd PF07826.6 gi|55379294|ref|YP_137144.1| - 6.6e-51 172.4 0.3 1.2e-50 171.6 0.2 1.4 1 1 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.2 gi|55379295|ref|YP_137145.1| - 1.1e-27 96.8 0.9 1.4e-27 96.4 0.6 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55379295|ref|YP_137145.1| - 1.1e-09 37.9 1.0 1.9e-09 37.2 0.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|55379295|ref|YP_137145.1| - 0.096 11.8 0.0 0.19 10.8 0.0 1.5 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Fer2 PF00111.22 gi|55379296|ref|YP_137146.1| - 5.1e-13 48.5 0.0 7.6e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|55379296|ref|YP_137146.1| - 0.091 12.5 0.3 0.59 9.9 0.2 2.0 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain AA_kinase PF00696.23 gi|55379297|ref|YP_137147.1| - 1.1e-45 156.0 2.4 2e-45 155.2 1.6 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.1 gi|55379297|ref|YP_137147.1| - 1.3e-16 59.7 0.2 1.8e-07 30.5 0.1 2.7 3 0 0 3 3 3 2 ACT domain ACT PF01842.20 gi|55379297|ref|YP_137147.1| - 1.4e-06 27.6 4.0 2e-06 27.1 0.2 3.0 3 1 0 3 3 3 1 ACT domain DUF2007 PF09413.5 gi|55379297|ref|YP_137147.1| - 8.8e-05 22.2 0.4 4.7 7.1 0.0 3.6 3 0 0 3 3 3 3 Domain of unknown function (DUF2007) Toprim_3 PF13362.1 gi|55379297|ref|YP_137147.1| - 0.18 12.0 2.0 1.8 8.8 0.1 3.3 3 1 0 3 3 3 0 Toprim domain YndJ PF14158.1 gi|55379299|ref|YP_137149.1| - 7e-81 271.1 34.6 7e-81 271.1 24.0 1.5 1 1 0 1 1 1 1 YndJ-like protein YrhK PF14145.1 gi|55379299|ref|YP_137149.1| - 3.1 7.5 8.1 0.41 10.3 0.1 3.1 3 0 0 3 3 3 0 YrhK-like protein DUF4166 PF13761.1 gi|55379300|ref|YP_137150.1| - 1.5e-26 93.2 0.1 1.7e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) PALP PF00291.20 gi|55379301|ref|YP_137151.1| - 6.9e-63 212.6 1.8 9.1e-63 212.3 1.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Uso1_p115_head PF04869.9 gi|55379301|ref|YP_137151.1| - 0.22 10.2 0.0 0.3 9.7 0.0 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region C1_2 PF03107.11 gi|55379301|ref|YP_137151.1| - 0.52 10.4 4.2 0.24 11.5 1.3 1.6 2 0 0 2 2 2 0 C1 domain TrmB PF01978.14 gi|55379302|ref|YP_137152.1| - 3.6e-14 52.2 0.0 4.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379302|ref|YP_137152.1| - 4.3e-07 29.5 0.3 6.8e-07 28.8 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55379302|ref|YP_137152.1| - 2.7e-05 23.6 1.2 9.2e-05 21.9 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55379302|ref|YP_137152.1| - 4.6e-05 23.1 0.1 7.6e-05 22.4 0.1 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|55379302|ref|YP_137152.1| - 0.0001 21.6 0.3 0.0002 20.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|55379302|ref|YP_137152.1| - 0.0001 21.9 0.1 0.00015 21.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|55379302|ref|YP_137152.1| - 0.00018 20.8 0.1 0.00028 20.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55379302|ref|YP_137152.1| - 0.0002 20.9 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|55379302|ref|YP_137152.1| - 0.00045 20.4 0.1 0.00071 19.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|55379302|ref|YP_137152.1| - 0.0014 18.4 0.2 0.0028 17.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55379302|ref|YP_137152.1| - 0.0017 17.9 0.2 0.0028 17.2 0.2 1.3 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.12 gi|55379302|ref|YP_137152.1| - 0.0027 17.1 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.1 gi|55379302|ref|YP_137152.1| - 0.034 14.2 0.1 0.043 13.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Phage_rep_org_N PF09681.5 gi|55379302|ref|YP_137152.1| - 0.041 13.4 0.0 0.17 11.4 0.0 1.8 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Penicillinase_R PF03965.11 gi|55379302|ref|YP_137152.1| - 0.055 13.5 0.1 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor Pribosyltran PF00156.22 gi|55379303|ref|YP_137153.1| - 1.4e-06 28.0 0.0 2.6e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain adh_short PF00106.20 gi|55379304|ref|YP_137154.1| - 7.5e-40 136.5 2.7 3.5e-39 134.3 2.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|55379304|ref|YP_137154.1| - 6.2e-20 71.6 0.9 9.1e-20 71.0 0.6 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|55379304|ref|YP_137154.1| - 2.8e-15 56.7 0.0 4.2e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|55379304|ref|YP_137154.1| - 1.5e-06 28.3 4.2 2.4e-06 27.7 2.9 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55379304|ref|YP_137154.1| - 3.5e-06 26.6 0.5 9.2e-06 25.2 0.2 1.9 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|55379304|ref|YP_137154.1| - 0.00012 21.7 0.1 0.00031 20.4 0.1 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|55379304|ref|YP_137154.1| - 0.0026 16.7 0.0 0.0036 16.2 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein ApbA PF02558.11 gi|55379304|ref|YP_137154.1| - 0.014 14.8 0.1 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|55379304|ref|YP_137154.1| - 0.022 14.0 1.4 0.036 13.2 1.0 1.3 1 0 0 1 1 1 0 NmrA-like family Glyco_trans_4_4 PF13579.1 gi|55379304|ref|YP_137154.1| - 0.026 14.6 1.1 0.42 10.7 0.2 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain TrkA_N PF02254.13 gi|55379304|ref|YP_137154.1| - 0.028 14.4 0.4 0.056 13.4 0.2 1.6 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|55379304|ref|YP_137154.1| - 0.03 13.9 1.0 0.052 13.2 0.5 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|55379304|ref|YP_137154.1| - 0.035 14.2 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase YjeF_N PF03853.10 gi|55379304|ref|YP_137154.1| - 0.053 13.1 0.1 0.081 12.5 0.1 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus NAD_binding_7 PF13241.1 gi|55379304|ref|YP_137154.1| - 0.094 12.9 0.4 0.24 11.6 0.2 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding OTCace_N PF02729.16 gi|55379305|ref|YP_137155.1| - 2.2e-49 166.7 0.0 5.5e-49 165.4 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|55379305|ref|YP_137155.1| - 1.5e-42 145.1 0.0 6.1e-42 143.1 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.23 gi|55379306|ref|YP_137156.1| - 9.4e-26 90.4 0.0 1.4e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|55379306|ref|YP_137156.1| - 5.8e-06 26.0 0.0 9.9e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.16 gi|55379307|ref|YP_137157.1| - 8.4e-95 317.4 0.0 9.8e-95 317.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Strep_his_triad PF04270.8 gi|55379307|ref|YP_137157.1| - 0.0032 17.1 2.2 0.071 12.8 0.1 3.0 2 1 1 3 3 3 1 Streptococcal histidine triad protein AA_kinase PF00696.23 gi|55379308|ref|YP_137158.1| - 6.2e-33 114.3 1.7 7.5e-33 114.0 1.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|55379309|ref|YP_137159.1| - 1.4e-27 96.3 0.0 2.6e-27 95.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|55379309|ref|YP_137159.1| - 2.6e-07 30.6 0.0 4.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|55379309|ref|YP_137159.1| - 0.025 14.4 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|55379310|ref|YP_137160.1| - 4e-35 121.0 0.0 2e-31 108.9 0.0 2.4 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|55379310|ref|YP_137160.1| - 4.3e-16 59.1 0.0 7.9e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|55379310|ref|YP_137160.1| - 6.3e-10 38.4 0.0 1e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|55379310|ref|YP_137160.1| - 8.2e-08 32.2 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55379310|ref|YP_137160.1| - 2.4e-07 29.8 0.0 3.9e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|55379310|ref|YP_137160.1| - 8.3e-05 21.9 0.0 0.00048 19.4 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|55379310|ref|YP_137160.1| - 0.00011 21.4 0.1 0.00061 19.0 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|55379310|ref|YP_137160.1| - 0.0015 17.9 0.1 0.0037 16.6 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain DNA_RNApol_7kD PF03604.8 gi|55379311|ref|YP_137161.1| - 0.00066 19.0 1.5 0.0065 15.9 1.1 2.0 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|55379311|ref|YP_137161.1| - 0.0027 17.4 1.1 0.012 15.4 0.7 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|55379311|ref|YP_137161.1| - 0.0092 15.4 0.1 0.033 13.6 0.0 1.8 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|55379311|ref|YP_137161.1| - 0.031 14.0 0.2 0.055 13.3 0.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.2 gi|55379311|ref|YP_137161.1| - 0.036 14.0 2.6 0.13 12.2 0.1 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|55379311|ref|YP_137161.1| - 0.057 13.1 0.2 0.061 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|55379311|ref|YP_137161.1| - 0.073 13.0 0.1 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|55379311|ref|YP_137161.1| - 0.085 12.8 0.7 0.17 11.8 0.5 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|55379311|ref|YP_137161.1| - 0.13 11.5 0.3 7.7 5.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|55379311|ref|YP_137161.1| - 0.17 11.7 1.2 12 5.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein RNA_POL_M_15KD PF02150.11 gi|55379311|ref|YP_137161.1| - 0.26 11.0 1.4 1.1 8.9 1.0 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|55379311|ref|YP_137161.1| - 0.32 10.9 1.9 5.5 6.9 0.2 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|55379311|ref|YP_137161.1| - 0.53 10.0 2.6 18 5.1 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF983 PF06170.7 gi|55379311|ref|YP_137161.1| - 0.54 10.3 1.9 19 5.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Prok-RING_1 PF14446.1 gi|55379311|ref|YP_137161.1| - 0.91 9.2 4.5 2.2 8.0 3.1 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Lyase_1 PF00206.15 gi|55379312|ref|YP_137162.1| - 2.7e-52 177.8 0.0 4.8e-52 177.1 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|55379312|ref|YP_137162.1| - 8.4e-11 41.7 0.3 2.8e-10 40.0 0.2 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.14 gi|55379313|ref|YP_137163.1| - 2.8e-146 487.5 0.0 3.3e-146 487.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|55379313|ref|YP_137163.1| - 6.5e-07 29.0 0.0 1e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|55379313|ref|YP_137163.1| - 3.3e-06 26.5 0.0 5.6e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|55379313|ref|YP_137163.1| - 0.00013 20.9 0.0 0.00021 20.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|55379313|ref|YP_137163.1| - 0.00047 18.8 0.0 0.0007 18.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase HR1 PF02185.11 gi|55379314|ref|YP_137164.1| - 0.012 15.3 0.9 0.03 14.0 0.6 1.6 1 0 0 1 1 1 0 Hr1 repeat PAGK PF15284.1 gi|55379314|ref|YP_137164.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage-encoded virulence factor ACOX PF01756.14 gi|55379314|ref|YP_137164.1| - 0.24 10.7 2.6 0.39 10.0 1.8 1.3 1 0 0 1 1 1 0 Acyl-CoA oxidase AAA_13 PF13166.1 gi|55379314|ref|YP_137164.1| - 0.29 9.5 4.1 0.35 9.2 2.9 1.1 1 0 0 1 1 1 0 AAA domain GvpG PF05120.7 gi|55379314|ref|YP_137164.1| - 0.39 10.5 7.2 2.9 7.7 3.2 2.2 2 0 0 2 2 2 0 Gas vesicle protein G PA26 PF04636.8 gi|55379314|ref|YP_137164.1| - 0.52 8.9 2.2 0.61 8.7 1.6 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) DUF2582 PF10771.4 gi|55379315|ref|YP_137165.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) TcpE PF12648.2 gi|55379316|ref|YP_137166.1| - 1.5 9.0 6.0 2.1 8.5 4.1 1.3 1 1 0 1 1 1 0 TcpE family Tic20 PF09685.5 gi|55379316|ref|YP_137166.1| - 1.7 8.6 7.3 2.3 8.2 5.0 1.2 1 0 0 1 1 1 0 Tic20-like protein DUF2116 PF09889.4 gi|55379316|ref|YP_137166.1| - 2.5 7.9 7.4 4.4 7.1 0.8 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2873 PF11395.3 gi|55379316|ref|YP_137166.1| - 6.9 6.3 12.4 7 6.3 1.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2873) Phlebovirus_G2 PF07245.6 gi|55379316|ref|YP_137166.1| - 7.8 4.6 5.6 8.3 4.5 3.8 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G2 Gate PF07670.9 gi|55379316|ref|YP_137166.1| - 8.9 6.2 9.4 1.1 9.1 1.9 1.9 1 1 1 2 2 2 0 Nucleoside recognition 2_5_RNA_ligase2 PF13563.1 gi|55379317|ref|YP_137167.1| - 1.1e-05 25.2 0.0 1.1e-05 25.1 0.0 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|55379317|ref|YP_137167.1| - 0.00082 19.3 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 LigT like Phosphoesterase DUF296 PF03479.10 gi|55379318|ref|YP_137168.1| - 1.6e-27 95.4 0.0 1.8e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|55379319|ref|YP_137169.1| - 0 1320.5 2.6 0 1317.7 1.8 1.9 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|55379319|ref|YP_137169.1| - 0.052 13.3 12.2 0.078 12.7 5.6 2.3 2 0 0 2 2 2 0 zinc-ribbons zf-C2H2 PF00096.21 gi|55379319|ref|YP_137169.1| - 2.6 8.5 5.4 14 6.3 0.0 3.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type DZR PF12773.2 gi|55379319|ref|YP_137169.1| - 2.9 7.7 19.8 15 5.4 9.3 3.0 2 1 0 2 2 2 0 Double zinc ribbon PAS_9 PF13426.1 gi|55379320|ref|YP_137170.1| - 7.8e-25 87.2 0.1 1.6e-22 79.8 0.0 2.8 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.21 gi|55379320|ref|YP_137170.1| - 9.4e-17 60.7 0.1 2.6e-16 59.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|55379320|ref|YP_137170.1| - 1.2e-16 60.4 0.1 1.7e-15 56.8 0.0 2.7 3 0 0 3 3 3 1 PAS fold PAS_4 PF08448.5 gi|55379320|ref|YP_137170.1| - 1.9e-14 53.6 0.7 2.5e-13 50.0 0.1 2.8 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|55379320|ref|YP_137170.1| - 4.5e-09 36.4 0.1 1.5e-08 34.8 0.0 1.9 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|55379320|ref|YP_137170.1| - 4.6e-09 36.1 0.3 4.6e-09 36.1 0.2 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55379320|ref|YP_137170.1| - 4.9e-09 36.8 0.3 1.7e-08 35.1 0.2 2.0 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|55379320|ref|YP_137170.1| - 2.2e-08 33.6 0.0 2.2e-06 27.3 0.0 2.9 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|55379320|ref|YP_137170.1| - 1.6e-05 24.9 0.1 0.00013 21.9 0.0 2.3 2 0 0 2 2 2 1 PAS fold GAF PF01590.21 gi|55379320|ref|YP_137170.1| - 2e-05 24.7 0.0 5.8e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|55379320|ref|YP_137170.1| - 0.00057 19.8 0.4 0.0078 16.2 0.0 2.9 3 1 0 3 3 2 1 PAS fold HalX PF08663.5 gi|55379320|ref|YP_137170.1| - 0.051 13.5 0.2 0.051 13.5 0.2 2.2 2 0 0 2 2 2 0 HalX domain HATPase_c PF02518.21 gi|55379321|ref|YP_137171.1| - 8.5e-16 57.6 0.0 1.4e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55379321|ref|YP_137171.1| - 4.4e-08 32.7 0.0 1.2e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|55379321|ref|YP_137171.1| - 2.1e-06 27.5 0.2 4.2e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|55379321|ref|YP_137171.1| - 2.3e-05 24.3 0.7 0.00016 21.6 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|55379321|ref|YP_137171.1| - 0.00055 20.2 0.0 0.0026 18.0 0.0 2.2 3 1 0 3 3 3 1 PAS domain PAS PF00989.19 gi|55379321|ref|YP_137171.1| - 0.0058 16.4 0.0 0.014 15.1 0.0 1.8 1 1 0 1 1 1 1 PAS fold YscO PF07321.7 gi|55379322|ref|YP_137172.1| - 0.05 13.4 0.8 0.058 13.2 0.5 1.1 1 0 0 1 1 1 0 Type III secretion protein YscO DUF1192 PF06698.6 gi|55379322|ref|YP_137172.1| - 0.2 11.4 1.1 0.32 10.8 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) 2-Hacid_dh_C PF02826.14 gi|55379323|ref|YP_137173.1| - 4.5e-58 195.3 0.0 8.8e-58 194.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|55379323|ref|YP_137173.1| - 5.2e-36 123.0 0.4 1.3e-35 121.7 0.3 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|55379323|ref|YP_137173.1| - 1.3e-06 27.7 0.7 0.00099 18.5 0.0 3.1 2 0 0 2 2 2 2 ACT domain NAD_binding_2 PF03446.10 gi|55379323|ref|YP_137173.1| - 4.4e-05 23.3 0.1 0.00028 20.7 0.0 2.4 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|55379323|ref|YP_137173.1| - 0.00028 21.0 0.0 0.002 18.2 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.7 gi|55379323|ref|YP_137173.1| - 0.0063 15.8 0.0 0.024 14.0 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|55379323|ref|YP_137173.1| - 0.012 16.0 0.3 0.13 12.7 0.0 2.8 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|55379323|ref|YP_137173.1| - 0.02 14.4 0.2 0.063 12.8 0.0 1.8 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|55379323|ref|YP_137173.1| - 0.03 14.2 0.5 0.37 10.8 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain CBS PF00571.23 gi|55379325|ref|YP_137175.1| - 9.8e-33 111.6 10.7 4.5e-09 35.9 0.2 4.1 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|55379326|ref|YP_137176.1| - 1.4e-54 184.2 0.0 2e-54 183.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|55379326|ref|YP_137176.1| - 2.5e-18 65.8 0.1 1.2e-17 63.6 0.0 2.2 1 1 0 1 1 1 1 Anticodon binding domain zinc_ribbon_4 PF13717.1 gi|55379326|ref|YP_137176.1| - 0.041 13.5 0.6 6 6.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|55379326|ref|YP_137176.1| - 0.044 13.3 0.6 5.2 6.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|55379326|ref|YP_137176.1| - 0.11 12.8 1.1 2.4 8.5 0.1 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar ERCC4 PF02732.10 gi|55379328|ref|YP_137178.1| - 5.8e-23 81.2 0.1 5.3e-22 78.1 0.0 2.5 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|55379328|ref|YP_137178.1| - 5.2e-19 67.8 0.0 1.1e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|55379328|ref|YP_137178.1| - 1.7e-16 60.1 0.0 6.2e-16 58.3 0.0 2.0 2 1 1 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|55379328|ref|YP_137178.1| - 1.9e-11 43.6 0.1 6.1e-11 42.0 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|55379328|ref|YP_137178.1| - 2.1e-10 40.5 0.6 1.2e-09 38.2 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|55379328|ref|YP_137178.1| - 7.8e-10 38.8 0.0 2.8e-09 37.0 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|55379328|ref|YP_137178.1| - 4.4e-07 29.2 0.4 5.2e-05 22.7 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.1 gi|55379328|ref|YP_137178.1| - 0.0058 16.6 0.0 0.025 14.5 0.0 2.2 2 0 0 2 2 1 1 Helicase C-terminal domain 5_3_exonuc PF01367.15 gi|55379328|ref|YP_137178.1| - 0.012 15.7 0.1 0.076 13.2 0.0 2.3 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold PUL PF08324.6 gi|55379328|ref|YP_137178.1| - 0.022 13.5 0.0 0.14 10.9 0.0 2.0 2 0 0 2 2 2 0 PUL domain HMG_box_5 PF14887.1 gi|55379328|ref|YP_137178.1| - 0.67 9.7 3.2 0.62 9.8 0.2 2.5 2 0 0 2 2 2 0 HMG (high mobility group) box 5 Auto_anti-p27 PF06677.7 gi|55379329|ref|YP_137179.1| - 7.9e-20 70.3 0.6 1.1e-19 69.8 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|55379329|ref|YP_137179.1| - 0.0016 18.3 1.1 0.16 11.9 0.0 2.4 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|55379329|ref|YP_137179.1| - 0.002 17.9 1.7 0.004 16.9 1.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon Acyl-CoA_dh_2 PF08028.6 gi|55379329|ref|YP_137179.1| - 0.013 15.7 1.8 0.013 15.7 1.2 1.9 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain zf-dskA_traR PF01258.12 gi|55379329|ref|YP_137179.1| - 0.034 13.8 1.6 0.067 12.9 1.1 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger A2L_zn_ribbon PF08792.5 gi|55379329|ref|YP_137179.1| - 0.038 13.4 1.0 0.067 12.6 0.7 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain FYVE_2 PF02318.11 gi|55379329|ref|YP_137179.1| - 0.05 13.4 0.1 0.079 12.8 0.1 1.3 1 0 0 1 1 1 0 FYVE-type zinc finger Prok-RING_1 PF14446.1 gi|55379329|ref|YP_137179.1| - 0.054 13.2 1.2 0.093 12.4 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|55379329|ref|YP_137179.1| - 0.075 12.7 2.1 5.1 6.8 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|55379329|ref|YP_137179.1| - 0.08 12.7 0.3 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|55379329|ref|YP_137179.1| - 0.08 12.6 0.3 0.14 11.8 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|55379329|ref|YP_137179.1| - 0.11 12.2 0.8 0.18 11.4 0.5 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|55379329|ref|YP_137179.1| - 0.48 10.1 3.2 0.88 9.2 2.2 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|55379329|ref|YP_137179.1| - 0.63 9.3 3.3 1.6 8.0 2.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55379329|ref|YP_137179.1| - 1.6 8.3 5.3 6.8 6.3 3.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Ldh_1_N PF00056.18 gi|55379330|ref|YP_137180.1| - 4.6e-39 133.4 0.2 6.5e-39 132.9 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|55379330|ref|YP_137180.1| - 1.9e-32 112.3 0.0 3e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF2072 PF09845.4 gi|55379332|ref|YP_137182.1| - 4.3e-29 101.0 0.1 4.8e-14 52.4 0.0 2.2 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|55379332|ref|YP_137182.1| - 0.043 13.5 1.2 0.087 12.5 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-IS66 PF13005.2 gi|55379332|ref|YP_137182.1| - 0.21 11.5 2.9 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|55379332|ref|YP_137182.1| - 0.45 10.5 2.7 1.4 8.8 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|55379332|ref|YP_137182.1| - 0.48 9.9 4.8 0.86 9.1 3.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.4 gi|55379333|ref|YP_137183.1| - 2.7e-47 158.7 0.7 3.3e-47 158.4 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|55379334|ref|YP_137184.1| - 2.5e-15 56.4 0.0 3.4e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|55379334|ref|YP_137184.1| - 1.7e-11 43.8 0.2 4.5e-05 22.9 0.0 2.8 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|55379334|ref|YP_137184.1| - 8.8e-08 31.5 0.0 8e-05 21.9 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|55379334|ref|YP_137184.1| - 1.3e-05 25.9 0.2 2.2e-05 25.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|55379334|ref|YP_137184.1| - 2.9e-05 23.4 0.4 0.0003 20.1 0.3 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_18 PF13238.1 gi|55379334|ref|YP_137184.1| - 0.00011 22.4 0.0 0.00017 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|55379334|ref|YP_137184.1| - 0.0002 21.8 0.0 0.00069 20.1 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|55379334|ref|YP_137184.1| - 0.00025 20.3 0.0 0.12 11.5 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|55379334|ref|YP_137184.1| - 0.00033 19.7 0.0 0.00067 18.7 0.0 1.3 1 1 0 1 1 1 1 Septin Ras PF00071.17 gi|55379334|ref|YP_137184.1| - 0.00057 19.3 0.0 0.17 11.2 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_28 PF13521.1 gi|55379334|ref|YP_137184.1| - 0.00088 19.2 0.1 0.036 14.0 0.0 2.3 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|55379334|ref|YP_137184.1| - 0.0016 18.2 0.0 0.14 11.9 0.0 2.3 1 1 1 2 2 2 1 Dynamin family AAA_22 PF13401.1 gi|55379334|ref|YP_137184.1| - 0.0018 18.4 0.0 0.0036 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|55379334|ref|YP_137184.1| - 0.0018 17.1 0.0 0.0055 15.5 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|55379334|ref|YP_137184.1| - 0.0029 17.6 0.0 0.0044 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|55379334|ref|YP_137184.1| - 0.0043 16.5 0.1 0.61 9.5 0.1 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|55379334|ref|YP_137184.1| - 0.0057 16.8 0.0 0.02 15.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|55379334|ref|YP_137184.1| - 0.0061 15.6 0.0 0.016 14.3 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|55379334|ref|YP_137184.1| - 0.0072 16.0 0.2 0.048 13.4 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|55379334|ref|YP_137184.1| - 0.011 15.8 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|55379334|ref|YP_137184.1| - 0.037 13.7 0.0 0.059 13.0 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|55379334|ref|YP_137184.1| - 0.038 14.3 0.0 0.062 13.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|55379334|ref|YP_137184.1| - 0.04 12.6 0.1 1 8.0 0.0 2.6 2 1 0 2 2 2 0 ArgK protein MMR_HSR1_C PF08438.5 gi|55379334|ref|YP_137184.1| - 0.047 13.9 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal RuvB_N PF05496.7 gi|55379334|ref|YP_137184.1| - 0.047 12.7 0.0 0.08 11.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|55379334|ref|YP_137184.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|55379334|ref|YP_137184.1| - 0.073 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|55379334|ref|YP_137184.1| - 0.076 12.4 0.0 9.1 5.7 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|55379334|ref|YP_137184.1| - 0.088 12.5 0.0 0.23 11.1 0.0 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|55379334|ref|YP_137184.1| - 0.089 12.1 0.0 0.18 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain HGD-D PF06050.8 gi|55379334|ref|YP_137184.1| - 0.099 11.4 0.0 0.27 10.0 0.0 1.9 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Parvo_NS1 PF01057.12 gi|55379334|ref|YP_137184.1| - 0.14 10.9 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|55379334|ref|YP_137184.1| - 0.18 11.3 1.4 0.41 10.2 1.0 1.8 1 1 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|55379335|ref|YP_137185.1| - 2.4e-28 97.6 0.1 6.6e-28 96.2 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|55379335|ref|YP_137185.1| - 1.3e-12 48.0 2.7 1.7e-11 44.4 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|55379335|ref|YP_137185.1| - 7e-10 39.1 0.2 9.7e-09 35.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379335|ref|YP_137185.1| - 2.8e-08 34.0 1.0 7.5e-06 26.1 0.7 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|55379335|ref|YP_137185.1| - 7.4e-05 22.5 0.2 0.00028 20.6 0.2 1.9 1 1 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|55379335|ref|YP_137185.1| - 0.0005 19.0 0.0 0.00088 18.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|55379335|ref|YP_137185.1| - 0.00062 19.7 0.0 0.0071 16.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|55379335|ref|YP_137185.1| - 0.0017 19.1 0.2 0.0087 16.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|55379335|ref|YP_137185.1| - 0.0023 18.2 0.4 0.0086 16.3 0.1 2.3 2 1 1 3 3 2 1 AAA domain DUF815 PF05673.8 gi|55379335|ref|YP_137185.1| - 0.0026 16.7 0.0 0.0049 15.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|55379335|ref|YP_137185.1| - 0.0031 17.0 0.0 0.0071 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|55379335|ref|YP_137185.1| - 0.0042 16.1 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|55379335|ref|YP_137185.1| - 0.011 14.6 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.9 gi|55379335|ref|YP_137185.1| - 0.04 12.8 0.3 0.15 10.9 0.2 1.9 1 1 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.1 gi|55379335|ref|YP_137185.1| - 0.048 13.2 0.1 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|55379335|ref|YP_137185.1| - 0.056 13.7 0.0 0.15 12.3 0.0 1.8 1 1 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|55379335|ref|YP_137185.1| - 0.077 12.4 3.9 0.19 11.2 0.9 2.6 2 1 0 2 2 2 0 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.13 gi|55379335|ref|YP_137185.1| - 0.079 12.4 0.2 0.48 9.8 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|55379335|ref|YP_137185.1| - 0.11 12.2 0.3 2.2 7.9 0.1 2.9 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|55379335|ref|YP_137185.1| - 0.13 12.4 0.0 0.35 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF3422 PF11902.3 gi|55379335|ref|YP_137185.1| - 1.9 7.2 8.8 2.9 6.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) FlgN PF05130.7 gi|55379335|ref|YP_137185.1| - 3.2 8.0 8.1 13 6.0 0.1 2.4 2 0 0 2 2 2 0 FlgN protein Peptidase_S24 PF00717.18 gi|55379336|ref|YP_137186.1| - 1.6e-05 24.4 0.0 3.7e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.18 gi|55379337|ref|YP_137187.1| - 1.5e-07 30.9 0.0 3.2e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|55379337|ref|YP_137187.1| - 4 7.2 5.3 3.8 7.3 2.5 1.8 2 0 0 2 2 2 0 PepSY-associated TM helix DNA_pol_E_B PF04042.11 gi|55379338|ref|YP_137188.1| - 2e-13 50.0 0.0 2.7e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|55379338|ref|YP_137188.1| - 7.6e-13 48.5 0.4 1.5e-12 47.6 0.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55379338|ref|YP_137188.1| - 3.2e-10 39.7 1.0 5.4e-10 38.9 0.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Cys_Met_Meta_PP PF01053.15 gi|55379339|ref|YP_137189.1| - 3.3e-137 456.8 0.0 3.8e-137 456.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|55379339|ref|YP_137189.1| - 5.8e-07 28.7 0.0 8.7e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|55379339|ref|YP_137189.1| - 9.2e-07 28.2 0.1 1.7e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|55379339|ref|YP_137189.1| - 6.5e-05 21.8 0.3 0.00016 20.5 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|55379339|ref|YP_137189.1| - 0.0086 15.2 0.0 0.018 14.1 0.0 1.6 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|55379339|ref|YP_137189.1| - 0.095 11.1 0.0 0.13 10.6 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) HAD PF12710.2 gi|55379340|ref|YP_137190.1| - 1e-20 74.7 0.1 1.3e-20 74.4 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55379340|ref|YP_137190.1| - 7.2e-16 59.2 2.1 1e-12 48.9 1.5 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|55379340|ref|YP_137190.1| - 6.8e-09 35.6 0.1 5.6e-05 22.8 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|55379340|ref|YP_137190.1| - 5.8e-08 33.1 0.0 1.2e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|55379340|ref|YP_137190.1| - 0.0022 17.1 0.0 0.025 13.7 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.1 gi|55379340|ref|YP_137190.1| - 0.023 14.5 0.0 0.1 12.5 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|55379340|ref|YP_137190.1| - 0.039 13.2 0.0 0.054 12.8 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Cupin_2 PF07883.6 gi|55379341|ref|YP_137191.1| - 4.1e-10 39.0 0.4 5.9e-10 38.5 0.3 1.3 1 0 0 1 1 1 1 Cupin domain TF_Zn_Ribbon PF08271.7 gi|55379341|ref|YP_137191.1| - 4.6e-05 22.6 2.2 7.5e-05 21.9 1.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cupin_3 PF05899.7 gi|55379341|ref|YP_137191.1| - 0.00046 19.5 0.3 0.0007 18.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) zf-NADH-PPase PF09297.6 gi|55379341|ref|YP_137191.1| - 0.003 17.0 0.2 0.14 11.7 0.0 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|55379341|ref|YP_137191.1| - 0.0032 17.2 1.7 0.0086 15.8 1.2 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Cupin_1 PF00190.17 gi|55379341|ref|YP_137191.1| - 0.005 16.2 0.0 0.0082 15.5 0.0 1.4 1 0 0 1 1 1 1 Cupin Zn-ribbon_8 PF09723.5 gi|55379341|ref|YP_137191.1| - 0.0078 16.1 0.6 0.017 15.0 0.4 1.6 1 1 0 1 1 1 1 Zinc ribbon domain FdtA PF05523.6 gi|55379341|ref|YP_137191.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 WxcM-like, C-terminal RRN7 PF11781.3 gi|55379341|ref|YP_137191.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|55379341|ref|YP_137191.1| - 0.14 11.6 0.2 0.41 10.1 0.1 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|55379341|ref|YP_137191.1| - 0.3 10.3 4.5 0.29 10.4 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|55379341|ref|YP_137191.1| - 0.34 10.6 7.7 1.9 8.2 0.7 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|55379341|ref|YP_137191.1| - 0.47 10.2 6.4 1.8 8.2 1.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|55379341|ref|YP_137191.1| - 0.59 9.6 3.2 0.53 9.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|55379341|ref|YP_137191.1| - 4.5 7.3 6.2 25 4.9 0.8 2.5 1 1 1 2 2 2 0 zinc-finger Helicase_C_2 PF13307.1 gi|55379342|ref|YP_137192.1| - 6.3e-29 101.0 0.0 1.8e-28 99.5 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|55379342|ref|YP_137192.1| - 5.2e-21 74.8 0.1 3.9e-20 71.9 0.1 2.3 2 1 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|55379342|ref|YP_137192.1| - 3.3e-10 39.7 0.2 5.9e-07 29.1 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|55379342|ref|YP_137192.1| - 9.6e-06 25.5 0.9 0.0001 22.2 0.6 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4456 PF14644.1 gi|55379342|ref|YP_137192.1| - 0.0008 18.6 0.7 0.065 12.4 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4456) KaiC PF06745.8 gi|55379342|ref|YP_137192.1| - 0.0027 16.8 0.0 0.0046 16.0 0.0 1.4 1 0 0 1 1 1 1 KaiC Zot PF05707.7 gi|55379342|ref|YP_137192.1| - 0.0042 16.5 0.1 0.94 8.9 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|55379342|ref|YP_137192.1| - 0.013 15.2 0.1 0.046 13.4 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|55379342|ref|YP_137192.1| - 0.024 14.8 0.1 3.1 7.9 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.1 gi|55379342|ref|YP_137192.1| - 0.032 13.0 0.0 0.06 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 PhoH PF02562.11 gi|55379342|ref|YP_137192.1| - 0.047 12.9 0.1 0.15 11.2 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|55379342|ref|YP_137192.1| - 0.049 12.6 0.1 2.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|55379342|ref|YP_137192.1| - 0.097 11.2 0.0 0.18 10.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HAUS-augmin3 PF14932.1 gi|55379342|ref|YP_137192.1| - 0.95 8.5 6.5 0.15 11.1 0.1 2.3 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 HCMV_UL139 PF12507.3 gi|55379342|ref|YP_137192.1| - 1.5 8.9 5.9 0.44 10.7 0.3 2.6 2 1 1 3 3 3 0 Human Cytomegalovirus UL139 protein Cation_efflux PF01545.16 gi|55379344|ref|YP_137194.1| - 1e-45 156.0 0.0 1.2e-45 155.8 0.0 1.0 1 0 0 1 1 1 1 Cation efflux family BacA PF02673.13 gi|55379344|ref|YP_137194.1| - 0.0054 15.9 1.2 0.0086 15.2 0.1 1.9 2 0 0 2 2 2 1 Bacitracin resistance protein BacA Metallophos_2 PF12850.2 gi|55379345|ref|YP_137195.1| - 1.4e-23 83.4 1.5 1.8e-23 83.1 1.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55379345|ref|YP_137195.1| - 6.5e-05 22.4 4.8 0.035 13.5 0.4 2.2 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase Glyco_trans_4_4 PF13579.1 gi|55379345|ref|YP_137195.1| - 0.023 14.8 1.9 0.058 13.5 1.2 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Metallophos_3 PF14582.1 gi|55379345|ref|YP_137195.1| - 0.057 12.5 0.1 0.34 10.0 0.0 1.9 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HTH_20 PF12840.2 gi|55379346|ref|YP_137196.1| - 1.2e-14 53.7 0.1 2.8e-14 52.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55379346|ref|YP_137196.1| - 7.6e-08 31.6 0.0 1.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55379346|ref|YP_137196.1| - 0.00013 21.5 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|55379346|ref|YP_137196.1| - 0.00037 20.0 0.0 0.00061 19.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55379346|ref|YP_137196.1| - 0.0093 15.6 0.0 0.029 14.0 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|55379346|ref|YP_137196.1| - 0.013 15.5 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|55379346|ref|YP_137196.1| - 0.052 13.1 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.15 gi|55379346|ref|YP_137196.1| - 0.091 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF3899 PF13038.1 gi|55379347|ref|YP_137197.1| - 0.034 14.2 1.1 0.036 14.2 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3899) FtsH_ext PF06480.10 gi|55379347|ref|YP_137197.1| - 0.11 12.7 0.2 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 FtsH Extracellular Peptidase_M29 PF02073.10 gi|55379348|ref|YP_137198.1| - 9.2e-111 370.4 0.4 1.1e-110 370.1 0.3 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) MCPsignal PF00015.16 gi|55379349|ref|YP_137199.1| - 1e-46 159.1 25.1 1e-46 159.1 17.4 3.7 1 1 3 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55379349|ref|YP_137199.1| - 2.9e-11 43.3 2.6 2.9e-11 43.3 1.8 5.3 6 0 0 6 6 5 1 HAMP domain DUF948 PF06103.6 gi|55379349|ref|YP_137199.1| - 0.00096 18.9 31.8 0.064 13.1 0.1 7.3 4 2 3 7 7 7 2 Bacterial protein of unknown function (DUF948) Mod_r PF07200.8 gi|55379349|ref|YP_137199.1| - 0.0032 17.4 14.6 0.71 9.7 2.3 3.8 4 0 0 4 4 4 2 Modifier of rudimentary (Mod(r)) protein IncA PF04156.9 gi|55379349|ref|YP_137199.1| - 0.0038 16.8 20.2 13 5.3 0.0 4.7 2 1 0 3 3 3 0 IncA protein AAA_13 PF13166.1 gi|55379349|ref|YP_137199.1| - 0.0046 15.4 21.4 0.02 13.3 8.9 2.5 1 1 2 3 3 3 3 AAA domain Spc7 PF08317.6 gi|55379349|ref|YP_137199.1| - 0.0067 15.1 14.1 0.013 14.1 1.5 3.1 3 0 0 3 3 3 2 Spc7 kinetochore protein Endotoxin_N PF03945.9 gi|55379349|ref|YP_137199.1| - 0.013 14.9 0.1 3.4 6.9 0.0 3.0 3 0 0 3 3 3 0 delta endotoxin, N-terminal domain Laminin_II PF06009.7 gi|55379349|ref|YP_137199.1| - 0.029 14.1 34.5 0.11 12.2 0.7 5.2 2 2 3 5 5 5 0 Laminin Domain II DASH_Dad2 PF08654.5 gi|55379349|ref|YP_137199.1| - 0.03 14.3 0.7 0.03 14.3 0.5 5.0 3 2 2 5 5 5 0 DASH complex subunit Dad2 DUF4200 PF13863.1 gi|55379349|ref|YP_137199.1| - 0.08 12.8 15.6 0.73 9.7 0.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) Baculo_PEP_C PF04513.7 gi|55379349|ref|YP_137199.1| - 0.27 11.0 17.1 0.83 9.4 0.4 4.3 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|55379349|ref|YP_137199.1| - 0.28 10.9 20.4 0.061 13.1 1.8 4.4 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|55379349|ref|YP_137199.1| - 0.34 10.7 19.3 2.7 7.8 0.9 5.2 3 2 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|55379349|ref|YP_137199.1| - 0.39 10.8 12.8 1.9 8.5 0.5 4.2 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|55379349|ref|YP_137199.1| - 0.41 10.5 19.3 0.14 12.0 2.0 3.6 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.1 gi|55379349|ref|YP_137199.1| - 0.43 9.7 13.2 4.3 6.4 7.8 3.0 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Syntaxin-6_N PF09177.6 gi|55379349|ref|YP_137199.1| - 1 9.8 27.1 2.2 8.7 1.5 5.6 3 2 3 6 6 6 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.17 gi|55379349|ref|YP_137199.1| - 1.7 8.7 21.3 1.1 9.2 3.0 4.5 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|55379349|ref|YP_137199.1| - 1.9 8.7 22.9 1.5 9.0 0.9 5.4 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|55379349|ref|YP_137199.1| - 2.8 8.3 17.4 1.8 8.9 1.7 4.6 2 2 2 5 5 5 0 Protein of unknown function (DUF972) YtxH PF12732.2 gi|55379349|ref|YP_137199.1| - 2.8 8.3 34.1 59 4.1 3.0 6.6 3 1 0 3 3 1 0 YtxH-like protein BLOC1_2 PF10046.4 gi|55379349|ref|YP_137199.1| - 3.1 7.9 19.9 0.47 10.6 1.3 5.4 3 2 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.7 gi|55379349|ref|YP_137199.1| - 5.1 6.8 27.0 4.5 7.0 3.8 4.1 3 2 0 3 3 3 0 TPR/MLP1/MLP2-like protein WEMBL PF05701.6 gi|55379349|ref|YP_137199.1| - 5.4 5.3 56.2 0.056 11.9 13.3 3.2 1 1 0 2 2 2 0 Weak chloroplast movement under blue light DUF883 PF05957.8 gi|55379349|ref|YP_137199.1| - 7.7 6.9 47.3 0.99 9.8 4.6 6.0 3 2 1 4 4 3 0 Bacterial protein of unknown function (DUF883) DUF307 PF03733.8 gi|55379350|ref|YP_137200.1| - 7.3e-09 35.9 28.3 2.8e-05 24.4 7.5 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) DUF21 PF01595.15 gi|55379351|ref|YP_137201.1| - 1e-44 152.0 4.4 1.1e-44 151.9 3.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF21 zf-ribbon_3 PF13248.1 gi|55379352|ref|YP_137202.1| - 5.6e-05 22.2 2.7 8.3e-05 21.6 1.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55379352|ref|YP_137202.1| - 0.00014 21.6 0.5 0.00021 21.0 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55379352|ref|YP_137202.1| - 0.0021 17.4 1.2 0.0031 16.9 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain RecR PF02132.10 gi|55379352|ref|YP_137202.1| - 0.014 14.7 0.9 0.027 13.9 0.6 1.4 1 0 0 1 1 1 0 RecR protein zf-DHHC PF01529.15 gi|55379352|ref|YP_137202.1| - 0.018 14.4 0.2 0.021 14.2 0.2 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase Auto_anti-p27 PF06677.7 gi|55379352|ref|YP_137202.1| - 0.21 11.3 1.2 0.37 10.6 0.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RanBP PF00641.13 gi|55379352|ref|YP_137202.1| - 0.3 10.2 3.7 0.49 9.5 2.5 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF4131 PF13567.1 gi|55379353|ref|YP_137203.1| - 1.6 8.0 14.0 0.84 9.0 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2157 PF09925.4 gi|55379353|ref|YP_137203.1| - 9.9 5.7 18.4 6e+02 -0.1 12.8 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Radical_SAM PF04055.16 gi|55379354|ref|YP_137204.1| - 1.2e-05 25.5 0.8 0.001 19.2 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|55379354|ref|YP_137204.1| - 0.0002 21.3 0.2 0.00038 20.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|55379354|ref|YP_137204.1| - 0.00077 19.5 0.1 0.0015 18.6 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TetR_C PF02909.12 gi|55379354|ref|YP_137204.1| - 0.092 12.4 0.4 2.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Tetracyclin repressor, C-terminal all-alpha domain PASTA PF03793.14 gi|55379354|ref|YP_137204.1| - 0.14 11.8 0.0 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 PASTA domain PsiE PF06146.7 gi|55379355|ref|YP_137205.1| - 7.4e-16 58.1 6.3 7.4e-16 58.1 4.4 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E TspO_MBR PF03073.10 gi|55379355|ref|YP_137205.1| - 0.014 14.8 1.2 0.018 14.5 0.8 1.1 1 0 0 1 1 1 0 TspO/MBR family Orbi_NS3 PF01616.11 gi|55379355|ref|YP_137205.1| - 0.079 11.9 1.4 1.4 7.8 1.0 2.1 1 1 0 1 1 1 0 Orbivirus NS3 DUF2177 PF09945.4 gi|55379355|ref|YP_137205.1| - 1.1 9.2 8.0 0.67 9.9 2.7 2.4 1 1 2 3 3 3 0 Predicted membrane protein (DUF2177) DUF1129 PF06570.6 gi|55379355|ref|YP_137205.1| - 1.5 8.1 5.4 0.29 10.4 1.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Tetraspannin PF00335.15 gi|55379355|ref|YP_137205.1| - 4.8 6.3 7.6 1.5 8.0 1.6 2.1 1 1 1 2 2 2 0 Tetraspanin family DUF373 PF04123.8 gi|55379356|ref|YP_137206.1| - 9.6e-115 383.2 9.9 1.1e-114 383.0 6.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP_synt_I PF03899.10 gi|55379356|ref|YP_137206.1| - 0.082 13.0 9.1 1.3 9.2 0.2 2.5 2 0 0 2 2 2 0 ATP synthase I chain Myco_arth_vir_N PF09610.5 gi|55379356|ref|YP_137206.1| - 1.2 9.1 4.7 1.4 8.9 0.6 2.5 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF3186 PF11382.3 gi|55379357|ref|YP_137207.1| - 6.9e-05 22.1 0.8 9.5e-05 21.6 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) Bac_globin PF01152.16 gi|55379358|ref|YP_137208.1| - 9.9e-27 93.3 0.0 1.1e-26 93.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|55379358|ref|YP_137208.1| - 4.9e-05 23.0 0.0 0.00013 21.6 0.0 1.6 1 1 1 2 2 2 1 Protoglobin Peptidase_MA_2 PF13485.1 gi|55379359|ref|YP_137209.1| - 0.0021 18.0 0.6 0.0039 17.2 0.4 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily TRAM PF01938.15 gi|55379360|ref|YP_137210.1| - 4.4e-08 32.7 0.2 6.3e-08 32.2 0.2 1.3 1 0 0 1 1 1 1 TRAM domain Tom22 PF04281.8 gi|55379360|ref|YP_137210.1| - 2 7.9 5.3 2.9 7.4 3.6 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 EBV-NA3 PF05009.7 gi|55379360|ref|YP_137210.1| - 3.8 6.6 4.7 5.2 6.2 3.3 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) DUF2457 PF10446.4 gi|55379360|ref|YP_137210.1| - 4.1 6.0 9.8 5.2 5.6 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) adh_short_C2 PF13561.1 gi|55379361|ref|YP_137211.1| - 4e-27 95.5 0.0 4.8e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|55379361|ref|YP_137211.1| - 1.7e-20 73.6 1.8 2.4e-20 73.0 1.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55379361|ref|YP_137211.1| - 1.7e-11 44.1 0.2 2.5e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|55379361|ref|YP_137211.1| - 0.0014 18.6 0.4 0.0021 18.1 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55379361|ref|YP_137211.1| - 0.057 12.8 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NTP_transferase PF00483.18 gi|55379362|ref|YP_137212.1| - 7e-39 133.6 0.0 1.2e-38 132.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55379362|ref|YP_137212.1| - 3.8e-06 27.0 0.0 6.6e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|55379362|ref|YP_137212.1| - 0.0025 17.4 0.1 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase OEP PF02321.13 gi|55379363|ref|YP_137213.1| - 0.066 12.8 0.3 0.08 12.5 0.2 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein tRNA_anti-codon PF01336.20 gi|55379364|ref|YP_137214.1| - 0.0012 18.6 0.2 0.0087 15.9 0.0 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Glyoxalase_2 PF12681.2 gi|55379367|ref|YP_137216.1| - 6.5e-19 68.5 0.0 8.2e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|55379367|ref|YP_137216.1| - 1.7e-14 53.9 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|55379367|ref|YP_137216.1| - 5.5e-12 45.6 0.0 6.7e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|55379367|ref|YP_137216.1| - 1.3e-05 25.1 0.1 1.7e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain RHH_1 PF01402.16 gi|55379366|ref|YP_137217.1| - 3.9e-05 23.3 1.5 9.1e-05 22.1 0.1 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF4047 PF13256.1 gi|55379366|ref|YP_137217.1| - 0.028 14.3 1.8 0.05 13.5 1.0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4047) DUF3562 PF12085.3 gi|55379366|ref|YP_137217.1| - 0.067 13.0 0.7 0.18 11.6 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3562) Condensation PF00668.15 gi|55379366|ref|YP_137217.1| - 0.12 11.1 1.4 2.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Condensation domain DUF972 PF06156.8 gi|55379366|ref|YP_137217.1| - 0.14 12.4 1.6 0.28 11.5 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) zf-Mss51 PF13824.1 gi|55379366|ref|YP_137217.1| - 1.2 9.0 3.8 2.3 8.1 1.3 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 IncA PF04156.9 gi|55379366|ref|YP_137217.1| - 2.8 7.4 7.3 3.9 7.0 5.1 1.4 1 1 0 1 1 1 0 IncA protein HNH PF01844.18 gi|55379370|ref|YP_137220.1| - 2.4e-07 30.5 0.3 2.4e-07 30.5 0.2 5.3 5 2 1 6 6 6 2 HNH endonuclease HNH_2 PF13391.1 gi|55379370|ref|YP_137220.1| - 0.012 15.3 0.8 0.071 12.9 0.1 2.5 3 0 0 3 3 3 0 HNH endonuclease zf-MYND PF01753.13 gi|55379370|ref|YP_137220.1| - 0.051 13.4 13.2 0.22 11.4 1.3 4.5 3 2 0 3 3 3 0 MYND finger zf-C2H2 PF00096.21 gi|55379370|ref|YP_137220.1| - 0.091 13.1 1.1 0.091 13.1 0.8 5.8 7 0 0 7 7 7 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|55379370|ref|YP_137220.1| - 0.16 11.9 17.7 19 5.3 0.1 6.2 6 1 1 7 7 7 0 Zinc ribbon domain DUF2863 PF11062.3 gi|55379370|ref|YP_137220.1| - 0.19 9.7 0.4 0.28 9.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) YhfH PF14149.1 gi|55379370|ref|YP_137220.1| - 0.38 10.5 4.8 1.7 8.5 0.3 3.5 3 0 0 3 3 3 0 YhfH-like protein zf-C2H2_jaz PF12171.3 gi|55379370|ref|YP_137220.1| - 1.4 9.1 0.0 1.4 9.1 0.0 4.4 4 0 0 4 4 4 0 Zinc-finger double-stranded RNA-binding A2L_zn_ribbon PF08792.5 gi|55379370|ref|YP_137220.1| - 1.7 8.2 16.8 0.051 13.0 1.0 4.5 5 0 0 5 5 5 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|55379370|ref|YP_137220.1| - 2.2 7.5 15.3 13 5.1 0.6 4.9 5 0 0 5 5 5 0 zinc-ribbon domain DUF4428 PF14471.1 gi|55379370|ref|YP_137220.1| - 2.2 8.0 5.6 5.2 6.8 0.1 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4428) zf-C2H2_6 PF13912.1 gi|55379370|ref|YP_137220.1| - 2.4 8.1 20.5 0.71 9.8 0.4 4.8 5 0 0 5 5 5 0 C2H2-type zinc finger Cytochrom_c3_2 PF14537.1 gi|55379370|ref|YP_137220.1| - 2.8 8.3 19.2 6 7.2 0.0 3.6 2 1 1 3 3 3 0 Cytochrome c3 Prok-RING_4 PF14447.1 gi|55379370|ref|YP_137220.1| - 4.6 6.8 8.1 26 4.4 0.1 4.2 4 0 0 4 4 4 0 Prokaryotic RING finger family 4 CpXC PF14353.1 gi|55379370|ref|YP_137220.1| - 6 6.8 11.2 0.33 10.9 1.8 3.1 3 1 0 3 3 2 0 CpXC protein Pribosyltran PF00156.22 gi|55379372|ref|YP_137222.1| - 1.1e-27 96.2 1.0 1.7e-26 92.3 0.7 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|55379372|ref|YP_137222.1| - 1.6e-05 24.3 0.0 0.00011 21.5 0.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|55379372|ref|YP_137222.1| - 0.00018 20.7 0.0 0.00024 20.4 0.0 1.4 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase CBS PF00571.23 gi|55379374|ref|YP_137223.1| - 2.3e-27 94.5 4.2 7.7e-16 57.6 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|55379374|ref|YP_137223.1| - 1.2e-20 73.2 10.8 3e-15 55.7 3.5 2.6 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|55379374|ref|YP_137223.1| - 0.00046 19.6 4.4 0.00046 19.6 3.1 2.0 2 0 0 2 2 2 1 Peptidase M50B-like Cupin_2 PF07883.6 gi|55379373|ref|YP_137224.1| - 3.8e-18 64.7 0.3 5.2e-18 64.3 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|55379373|ref|YP_137224.1| - 6.9e-10 38.5 0.0 1.1e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|55379373|ref|YP_137224.1| - 3.3e-05 23.5 0.1 4.5e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|55379373|ref|YP_137224.1| - 0.00081 19.3 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|55379373|ref|YP_137224.1| - 0.001 18.6 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|55379373|ref|YP_137224.1| - 0.0014 18.0 0.0 0.002 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DEAD PF00270.24 gi|55379375|ref|YP_137225.1| - 2.7e-24 85.5 0.0 7e-24 84.2 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|55379375|ref|YP_137225.1| - 4e-12 45.8 0.0 8.7e-12 44.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|55379375|ref|YP_137225.1| - 2.9e-07 30.5 0.0 1.3e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhnA_Zn_Ribbon PF08274.7 gi|55379375|ref|YP_137225.1| - 0.042 13.6 0.8 0.088 12.6 0.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon SNF2_N PF00176.18 gi|55379375|ref|YP_137225.1| - 0.15 10.8 0.0 0.23 10.1 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3806 PF12713.2 gi|55379376|ref|YP_137226.1| - 0.0023 17.3 0.2 0.49 9.8 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF3806) DZR PF12773.2 gi|55379377|ref|YP_137227.1| - 0.0014 18.4 0.8 0.0018 18.0 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|55379377|ref|YP_137227.1| - 0.014 15.0 0.3 0.016 14.8 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|55379377|ref|YP_137227.1| - 0.017 14.3 1.0 0.026 13.7 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Nop10p PF04135.7 gi|55379377|ref|YP_137227.1| - 0.025 14.2 0.6 0.042 13.5 0.4 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-C3HC4_3 PF13920.1 gi|55379377|ref|YP_137227.1| - 0.03 13.9 1.6 0.044 13.4 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.1 gi|55379377|ref|YP_137227.1| - 0.05 13.1 0.2 0.063 12.7 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain TerY-C PF15616.1 gi|55379377|ref|YP_137227.1| - 0.055 13.3 0.1 0.063 13.2 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zinc-ribbons_6 PF07191.7 gi|55379377|ref|YP_137227.1| - 0.062 13.0 2.2 0.081 12.7 1.5 1.2 1 0 0 1 1 1 0 zinc-ribbons GFA PF04828.9 gi|55379377|ref|YP_137227.1| - 0.099 12.6 2.2 0.55 10.2 1.5 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|55379377|ref|YP_137227.1| - 0.099 12.6 7.6 1.7 8.7 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|55379377|ref|YP_137227.1| - 0.1 12.6 1.5 0.13 12.3 1.0 1.2 1 0 0 1 1 1 0 DnaJ central domain Prok-RING_1 PF14446.1 gi|55379377|ref|YP_137227.1| - 0.14 11.8 2.7 0.2 11.3 1.9 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|55379377|ref|YP_137227.1| - 0.27 11.2 2.0 0.52 10.2 1.4 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.11 gi|55379377|ref|YP_137227.1| - 0.27 10.9 0.5 0.27 10.9 0.3 2.2 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|55379377|ref|YP_137227.1| - 0.39 10.3 2.5 0.78 9.4 1.7 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|55379377|ref|YP_137227.1| - 1.2 8.5 4.7 4.3 6.7 0.4 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding CitMHS PF03600.11 gi|55379378|ref|YP_137228.1| - 6.6e-42 143.3 0.0 1.2e-31 109.5 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|55379378|ref|YP_137228.1| - 8.7e-24 82.9 4.3 4.9e-14 51.6 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|55379378|ref|YP_137228.1| - 6.9e-22 77.9 36.8 4.6e-12 45.5 10.0 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF4342 PF14242.1 gi|55379378|ref|YP_137228.1| - 0.023 14.4 0.9 0.023 14.4 0.6 4.3 4 1 0 4 4 4 0 Domain of unknown function (DUF4342) MCPsignal PF00015.16 gi|55379379|ref|YP_137229.1| - 5e-47 160.2 36.5 5e-47 160.2 25.3 4.7 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55379379|ref|YP_137229.1| - 3.7e-17 62.2 26.7 1.7e-13 50.4 0.3 6.7 6 1 0 6 6 6 2 HAMP domain WEMBL PF05701.6 gi|55379379|ref|YP_137229.1| - 0.00012 20.7 13.7 0.00012 20.7 9.5 3.4 1 1 1 2 2 2 1 Weak chloroplast movement under blue light DUF3407 PF11887.3 gi|55379379|ref|YP_137229.1| - 0.091 12.0 12.8 0.077 12.2 0.3 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF3407) DUF904 PF06005.7 gi|55379379|ref|YP_137229.1| - 0.19 12.0 11.0 9.6 6.5 2.9 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF904) MtrG PF04210.8 gi|55379379|ref|YP_137229.1| - 0.35 10.5 1.3 17 5.1 0.0 3.9 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G AAA_27 PF13514.1 gi|55379379|ref|YP_137229.1| - 0.59 7.7 56.6 1.1 6.8 39.3 1.4 1 0 0 1 1 1 0 AAA domain AATF-Che1 PF13339.1 gi|55379379|ref|YP_137229.1| - 5.4 7.1 23.1 8.3 6.5 5.5 4.6 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor DUF1664 PF07889.7 gi|55379379|ref|YP_137229.1| - 8.1 6.2 28.5 1.4 8.7 1.4 5.2 1 1 2 5 5 5 0 Protein of unknown function (DUF1664) Mod_r PF07200.8 gi|55379379|ref|YP_137229.1| - 8.5 6.2 22.6 0.9 9.4 0.2 4.6 2 1 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Bmp PF02608.9 gi|55379380|ref|YP_137230.1| - 3e-64 216.6 0.1 3.5e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|55379380|ref|YP_137230.1| - 5e-05 22.7 1.9 7e-05 22.3 1.2 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain MCM PF00493.18 gi|55379381|ref|YP_137231.1| - 9.7e-122 405.8 0.0 2.2e-99 332.3 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|55379381|ref|YP_137231.1| - 4e-24 84.6 0.0 8e-15 54.8 0.0 3.0 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|55379381|ref|YP_137231.1| - 1.5e-21 76.6 0.0 7.3e-10 38.2 0.0 3.4 2 1 1 3 3 3 2 Intein splicing domain MCM_N PF14551.1 gi|55379381|ref|YP_137231.1| - 7.3e-19 68.4 0.1 3.6e-18 66.2 0.1 2.3 1 0 0 1 1 1 1 MCM N-terminal domain HTH_31 PF13560.1 gi|55379381|ref|YP_137231.1| - 1.3e-09 38.1 0.3 1.3e-09 38.1 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|55379381|ref|YP_137231.1| - 1.7e-09 37.3 0.0 4.2e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|55379381|ref|YP_137231.1| - 4.8e-08 32.9 0.0 1.1e-06 28.5 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|55379381|ref|YP_137231.1| - 7e-08 31.8 0.0 1.5e-05 24.2 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|55379381|ref|YP_137231.1| - 0.0034 17.0 0.0 0.42 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Hint PF01079.15 gi|55379381|ref|YP_137231.1| - 0.0046 16.1 0.0 0.067 12.3 0.0 2.2 2 0 0 2 2 2 1 Hint module Sigma54_activat PF00158.21 gi|55379381|ref|YP_137231.1| - 0.0084 15.6 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF3987 PF13148.1 gi|55379381|ref|YP_137231.1| - 0.011 14.3 0.0 0.073 11.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) Zn-ribbon_8 PF09723.5 gi|55379381|ref|YP_137231.1| - 0.84 9.6 2.3 1.9 8.4 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Nop25 PF09805.4 gi|55379383|ref|YP_137233.1| - 1 9.4 7.1 1.6 8.8 4.9 1.2 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) CbiA PF01656.18 gi|55379385|ref|YP_137235.1| - 1e-18 67.4 0.1 2.5e-18 66.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|55379385|ref|YP_137235.1| - 7.7e-07 28.7 0.4 0.048 13.0 0.0 3.0 3 0 0 3 3 3 3 YhjQ protein AAA_31 PF13614.1 gi|55379385|ref|YP_137235.1| - 2.7e-06 27.4 0.0 3.3e-05 23.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|55379385|ref|YP_137235.1| - 0.00024 20.9 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_25 PF13481.1 gi|55379385|ref|YP_137235.1| - 0.00068 19.0 0.6 0.0015 17.9 0.2 1.6 1 1 1 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|55379385|ref|YP_137235.1| - 0.00095 18.4 0.0 0.23 10.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|55379385|ref|YP_137235.1| - 0.0023 17.0 0.2 0.88 8.5 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ AAA_17 PF13207.1 gi|55379385|ref|YP_137235.1| - 0.0025 18.6 0.2 0.015 16.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|55379385|ref|YP_137235.1| - 0.0061 15.6 0.1 0.012 14.6 0.1 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase DUF258 PF03193.11 gi|55379385|ref|YP_137235.1| - 0.062 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|55379385|ref|YP_137235.1| - 0.096 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|55379385|ref|YP_137235.1| - 0.12 12.2 0.3 0.36 10.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain TFIIB PF00382.14 gi|55379386|ref|YP_137236.1| - 5.5e-33 112.6 2.6 1e-16 60.5 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|55379386|ref|YP_137236.1| - 1.7e-09 36.8 3.3 4.4e-09 35.5 2.3 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding HARE-HTH PF05066.8 gi|55379386|ref|YP_137236.1| - 0.029 14.7 0.0 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain zinc-ribbons_6 PF07191.7 gi|55379386|ref|YP_137236.1| - 0.056 13.2 0.4 0.11 12.3 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|55379386|ref|YP_137236.1| - 0.093 12.5 1.0 0.2 11.5 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon FMN_red PF03358.10 gi|55379389|ref|YP_137239.1| - 7e-29 100.3 0.0 8.9e-29 99.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|55379389|ref|YP_137239.1| - 3e-07 30.1 0.0 4.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Rieske PF00355.21 gi|55379390|ref|YP_137240.1| - 3.7e-08 32.8 0.2 6.6e-08 32.0 0.2 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain RNA_pol_Rpb2_4 PF04566.8 gi|55379390|ref|YP_137240.1| - 0.098 12.4 0.1 0.34 10.7 0.1 1.8 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 NOA36 PF06524.7 gi|55379390|ref|YP_137240.1| - 5.3 6.2 5.7 7.6 5.7 3.9 1.2 1 0 0 1 1 1 0 NOA36 protein MatE PF01554.13 gi|55379391|ref|YP_137241.1| - 3.6e-47 159.9 25.2 5.9e-26 91.0 6.3 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|55379391|ref|YP_137241.1| - 3.3e-05 23.7 16.6 3.3e-05 23.7 11.5 4.0 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Tom5 PF10642.4 gi|55379391|ref|YP_137241.1| - 0.16 11.6 0.8 0.61 9.7 0.5 2.0 1 0 0 1 1 1 0 Mitochondrial import receptor subunit or translocase TetR_C_6 PF13977.1 gi|55379392|ref|YP_137242.1| - 3.1e-12 46.5 0.0 7.1e-12 45.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|55379392|ref|YP_137242.1| - 4.6e-11 42.1 0.0 8.3e-11 41.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|55379392|ref|YP_137242.1| - 0.0083 16.0 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region UPF0122 PF04297.9 gi|55379392|ref|YP_137242.1| - 0.081 12.9 0.1 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like AsnC_trans_reg PF01037.16 gi|55379393|ref|YP_137243.1| - 2.2e-13 49.7 0.0 3.6e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|55379393|ref|YP_137243.1| - 7.6e-10 38.0 0.2 1.7e-09 36.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55379393|ref|YP_137243.1| - 5.3e-07 29.0 0.2 8.5e-07 28.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|55379393|ref|YP_137243.1| - 7.6e-07 28.7 0.0 1.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55379393|ref|YP_137243.1| - 1.1e-05 25.1 0.0 2.7e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55379393|ref|YP_137243.1| - 7.2e-05 22.3 0.0 0.00018 21.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|55379393|ref|YP_137243.1| - 0.0019 17.8 0.0 0.0037 16.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|55379393|ref|YP_137243.1| - 0.007 15.8 0.1 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|55379393|ref|YP_137243.1| - 0.0098 15.8 0.0 0.06 13.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|55379393|ref|YP_137243.1| - 0.011 15.1 0.0 0.028 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|55379393|ref|YP_137243.1| - 0.014 15.1 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|55379393|ref|YP_137243.1| - 0.02 14.4 0.1 0.066 12.7 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Pneumo_matrix PF03393.11 gi|55379393|ref|YP_137243.1| - 0.035 13.0 0.0 0.043 12.7 0.0 1.0 1 0 0 1 1 1 0 Pneumovirus matrix protein HTH_36 PF13730.1 gi|55379393|ref|YP_137243.1| - 0.055 13.5 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55379393|ref|YP_137243.1| - 0.077 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2042 PF09743.4 gi|55379393|ref|YP_137243.1| - 0.087 12.1 0.0 0.18 11.0 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) Cdc6_C PF09079.6 gi|55379393|ref|YP_137243.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.7 1 1 0 1 1 1 0 CDC6, C terminal HTH_41 PF14502.1 gi|55379393|ref|YP_137243.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Gln-synt_C PF00120.19 gi|55379394|ref|YP_137244.1| - 1e-104 349.3 0.0 1.4e-104 348.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|55379394|ref|YP_137244.1| - 1.1e-28 98.6 0.1 2.5e-28 97.4 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|55379395|ref|YP_137245.1| - 2.8e-16 59.3 5.4 2.8e-16 59.3 3.7 2.3 1 1 2 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|55379395|ref|YP_137245.1| - 8.6e-07 28.6 2.0 1.6e-06 27.8 1.4 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|55379395|ref|YP_137245.1| - 0.21 11.8 0.8 0.4 10.9 0.2 1.7 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Virul_fac_BrkB PF03631.10 gi|55379396|ref|YP_137246.1| - 1.2e-37 129.7 19.0 1.2e-37 129.7 13.2 2.1 2 0 0 2 2 2 1 Virulence factor BrkB DUF2207 PF09972.4 gi|55379396|ref|YP_137246.1| - 0.0042 15.7 0.3 0.061 11.9 0.0 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) FA_desaturase PF00487.19 gi|55379396|ref|YP_137246.1| - 0.014 14.8 2.1 0.014 14.8 1.4 2.9 2 1 0 2 2 2 0 Fatty acid desaturase APT PF03440.9 gi|55379396|ref|YP_137246.1| - 0.23 11.2 2.2 2 8.1 0.1 2.9 2 1 1 3 3 3 0 Aerolysin/Pertussis toxin (APT) domain IncA PF04156.9 gi|55379396|ref|YP_137246.1| - 0.39 10.3 0.0 0.39 10.3 0.0 3.2 3 0 0 3 3 3 0 IncA protein MatE PF01554.13 gi|55379397|ref|YP_137247.1| - 1.6e-45 154.6 24.1 3.1e-24 85.4 1.5 2.4 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|55379397|ref|YP_137247.1| - 4.7e-08 32.9 10.5 4.7e-08 32.9 7.2 4.3 3 3 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|55379397|ref|YP_137247.1| - 7.3e-07 27.9 4.9 7.3e-07 27.9 3.4 2.4 3 0 0 3 3 3 2 MviN-like protein COX7C PF02935.11 gi|55379397|ref|YP_137247.1| - 9 6.1 8.8 6.8 6.5 0.7 3.3 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VIIc HTH_10 PF04967.7 gi|55379398|ref|YP_137248.1| - 7.2e-13 47.9 0.0 8.3e-13 47.7 0.0 1.1 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|55379398|ref|YP_137248.1| - 2e-05 24.1 0.1 2.5e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55379398|ref|YP_137248.1| - 0.00024 20.6 0.1 0.00034 20.1 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|55379398|ref|YP_137248.1| - 0.00026 20.6 0.3 0.00044 19.8 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|55379398|ref|YP_137248.1| - 0.00073 19.8 0.1 0.0011 19.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|55379398|ref|YP_137248.1| - 0.0091 15.5 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|55379398|ref|YP_137248.1| - 0.019 14.5 0.0 0.06 12.8 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_23 PF13384.1 gi|55379398|ref|YP_137248.1| - 0.025 14.2 0.0 0.059 13.0 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|55379398|ref|YP_137248.1| - 0.048 13.4 0.0 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma54_DBD PF04552.8 gi|55379398|ref|YP_137248.1| - 0.074 12.5 0.0 0.074 12.5 0.0 1.1 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_24 PF13412.1 gi|55379398|ref|YP_137248.1| - 0.078 12.3 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|55379398|ref|YP_137248.1| - 0.079 12.7 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|55379398|ref|YP_137248.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|55379398|ref|YP_137248.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.17 gi|55379398|ref|YP_137248.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix SHOCT PF09851.4 gi|55379399|ref|YP_137249.1| - 2.7e-09 36.1 2.5 3.9e-09 35.6 1.7 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|55379399|ref|YP_137249.1| - 7.2e-05 22.4 0.9 0.00016 21.3 0.6 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|55379399|ref|YP_137249.1| - 0.00019 21.1 1.3 0.00027 20.6 0.9 1.2 1 0 0 1 1 1 1 Gas vesicle protein G DUF2892 PF11127.3 gi|55379399|ref|YP_137249.1| - 7.1 6.5 8.2 10 6.0 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) LrgA PF03788.9 gi|55379400|ref|YP_137250.1| - 0.53 10.0 3.5 0.22 11.2 0.1 2.2 2 1 0 2 2 2 0 LrgA family TRM PF02005.11 gi|55379401|ref|YP_137251.1| - 5.7e-94 315.1 0.0 6.6e-94 314.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|55379401|ref|YP_137251.1| - 0.00014 21.8 0.4 0.00029 20.8 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55379401|ref|YP_137251.1| - 0.0003 20.2 0.0 0.00066 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Rad50_zn_hook PF04423.9 gi|55379401|ref|YP_137251.1| - 0.41 10.1 1.5 3.8 7.0 0.1 2.9 4 0 0 4 4 4 0 Rad50 zinc hook motif HATPase_c PF02518.21 gi|55379402|ref|YP_137252.1| - 1e-15 57.4 0.0 2e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|55379402|ref|YP_137252.1| - 1.5e-11 44.0 0.2 6.2e-10 38.8 0.1 2.6 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|55379402|ref|YP_137252.1| - 7.4e-09 35.6 0.6 4.3e-07 29.9 0.4 2.6 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|55379402|ref|YP_137252.1| - 2e-07 31.3 0.1 1.1e-05 25.6 0.1 3.1 2 1 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|55379402|ref|YP_137252.1| - 1.5e-06 27.9 0.3 4.3e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55379402|ref|YP_137252.1| - 0.00076 19.2 0.2 0.0078 16.0 0.0 2.7 3 0 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.1 gi|55379402|ref|YP_137252.1| - 0.0056 16.3 0.0 0.012 15.3 0.0 1.5 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.2 gi|55379402|ref|YP_137252.1| - 0.051 13.5 0.3 17 5.4 0.0 3.0 3 0 0 3 3 3 0 PAS fold DUF559 PF04480.7 gi|55379402|ref|YP_137252.1| - 0.12 12.0 0.2 0.25 10.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF559) ADC PF06314.6 gi|55379404|ref|YP_137254.1| - 1.7e-17 63.5 0.1 2.3e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.20 gi|55379405|ref|YP_137255.1| - 3.6e-30 105.0 0.9 6.4e-30 104.2 0.6 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55379405|ref|YP_137255.1| - 9e-19 68.1 0.0 1.1e-18 67.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55379405|ref|YP_137255.1| - 1.2e-13 51.1 1.3 1.8e-12 47.2 0.9 2.2 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55379405|ref|YP_137255.1| - 1.3e-05 24.7 0.0 2.4e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55379405|ref|YP_137255.1| - 3.2e-05 22.9 0.1 4.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55379405|ref|YP_137255.1| - 8.4e-05 22.6 0.7 0.00017 21.6 0.5 1.5 1 1 0 1 1 1 1 NADH(P)-binding DUF1737 PF08410.5 gi|55379405|ref|YP_137255.1| - 0.0072 16.0 0.0 0.025 14.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1737) PI-PLC-X PF00388.14 gi|55379405|ref|YP_137255.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Eno-Rase_NADH_b PF12242.3 gi|55379405|ref|YP_137255.1| - 8.5 6.2 9.2 0.14 11.9 0.7 2.3 3 0 0 3 3 3 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GATase PF00117.23 gi|55379406|ref|YP_137256.1| - 3.3e-30 104.9 0.0 3.9e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|55379406|ref|YP_137256.1| - 1.1e-09 38.0 0.4 6.8e-09 35.5 0.3 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|55379406|ref|YP_137256.1| - 1.2e-06 28.2 0.0 0.0036 16.9 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|55379406|ref|YP_137256.1| - 3.5e-06 26.6 0.1 1.5e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|55379406|ref|YP_137256.1| - 8.4e-05 22.0 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family CLP_protease PF00574.18 gi|55379407|ref|YP_137257.1| - 0.044 13.4 0.1 0.053 13.1 0.1 1.2 1 0 0 1 1 1 0 Clp protease OMS28_porin PF03532.8 gi|55379407|ref|YP_137257.1| - 0.083 11.9 0.2 0.092 11.8 0.1 1.2 1 0 0 1 1 1 0 OMS28 porin UDG PF03167.14 gi|55379408|ref|YP_137258.1| - 4.8e-35 120.2 0.0 6e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Epimerase_2 PF02350.14 gi|55379408|ref|YP_137258.1| - 0.15 10.7 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Ribonuc_L-PSP PF01042.16 gi|55379409|ref|YP_137259.1| - 1.9e-20 72.8 0.1 2.3e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP Histone_HNS PF00816.16 gi|55379409|ref|YP_137259.1| - 0.054 13.9 0.0 0.097 13.1 0.0 1.4 1 0 0 1 1 1 0 H-NS histone family DUF99 PF01949.11 gi|55379410|ref|YP_137260.1| - 1.2e-32 112.5 0.0 1.3e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 3-alpha PF03475.9 gi|55379410|ref|YP_137260.1| - 0.029 14.0 0.1 0.074 12.7 0.1 1.7 1 0 0 1 1 1 0 3-alpha domain GvpG PF05120.7 gi|55379411|ref|YP_137261.1| - 0.23 11.2 4.4 0.37 10.6 3.0 1.5 1 1 0 1 1 1 0 Gas vesicle protein G Lactamase_B PF00753.22 gi|55379412|ref|YP_137262.1| - 8.3e-18 64.7 8.8 9.2e-18 64.5 5.5 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55379412|ref|YP_137262.1| - 0.00029 20.4 2.3 0.00061 19.3 1.6 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55379412|ref|YP_137262.1| - 0.0024 17.5 1.4 0.0035 17.0 1.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF687 PF05095.7 gi|55379412|ref|YP_137262.1| - 0.067 11.5 0.0 0.093 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF687) Acyl_transf_3 PF01757.17 gi|55379413|ref|YP_137263.1| - 0.016 14.0 1.5 0.022 13.6 1.0 1.1 1 0 0 1 1 1 0 Acyltransferase family IclR PF01614.13 gi|55379413|ref|YP_137263.1| - 0.047 13.3 1.1 0.083 12.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial transcriptional regulator GAF_3 PF13492.1 gi|55379413|ref|YP_137263.1| - 0.097 12.7 1.7 1.6 8.8 0.1 2.6 2 1 0 2 2 2 0 GAF domain Ribosomal_L40e PF01020.12 gi|55379414|ref|YP_137264.1| - 3.2e-06 26.6 4.0 3.8e-06 26.3 2.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-DHHC PF01529.15 gi|55379414|ref|YP_137264.1| - 0.00043 19.7 1.0 0.00044 19.7 0.7 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DZR PF12773.2 gi|55379414|ref|YP_137264.1| - 0.00096 18.9 2.6 0.0011 18.6 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55379414|ref|YP_137264.1| - 0.008 15.6 2.4 0.011 15.2 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Toxin_5 PF05294.8 gi|55379414|ref|YP_137264.1| - 0.031 14.4 2.7 0.04 14.1 1.9 1.2 1 0 0 1 1 1 0 Scorpion short toxin zf-ribbon_3 PF13248.1 gi|55379414|ref|YP_137264.1| - 0.099 11.8 1.8 0.13 11.4 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|55379414|ref|YP_137264.1| - 0.23 10.9 5.6 0.46 10.0 3.9 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|55379414|ref|YP_137264.1| - 0.7 9.0 4.4 1.3 8.2 3.1 1.5 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Ribosomal_L37e PF01907.14 gi|55379414|ref|YP_137264.1| - 0.9 9.3 5.2 1.3 8.9 3.6 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|55379414|ref|YP_137264.1| - 3.2 7.5 5.7 1.8 8.2 0.9 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit MR_MLE_C PF13378.1 gi|55379415|ref|YP_137265.1| - 1.4e-05 25.0 0.0 2.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF367 PF04034.8 gi|55379416|ref|YP_137266.1| - 4.9e-45 152.2 0.0 5.7e-45 152.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF367) AhpC-TSA PF00578.16 gi|55379417|ref|YP_137267.1| - 1.7e-15 56.8 0.0 3.3e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55379417|ref|YP_137267.1| - 1.4e-08 34.3 0.0 3.2e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Redoxin DUF1771 PF08590.5 gi|55379417|ref|YP_137267.1| - 0.066 13.2 0.7 0.066 13.2 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Methyltransf_11 PF08241.7 gi|55379419|ref|YP_137269.1| - 6.4e-10 39.3 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379419|ref|YP_137269.1| - 4.1e-09 37.0 0.0 1.4e-08 35.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379419|ref|YP_137269.1| - 8.8e-08 32.0 0.0 1.4e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379419|ref|YP_137269.1| - 3.5e-07 30.5 0.0 5.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379419|ref|YP_137269.1| - 4.5e-07 29.5 0.0 1.7e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379419|ref|YP_137269.1| - 2.7e-05 24.1 0.5 8.6e-05 22.5 0.4 1.9 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|55379419|ref|YP_137269.1| - 3.8e-05 22.9 0.0 6.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|55379419|ref|YP_137269.1| - 5.5e-05 23.5 0.0 0.00019 21.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55379419|ref|YP_137269.1| - 0.0032 16.8 0.0 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.6 gi|55379419|ref|YP_137269.1| - 0.0037 16.7 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) SAM_MT PF04445.8 gi|55379419|ref|YP_137269.1| - 0.12 11.5 0.2 0.2 10.7 0.1 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase tRNA-synt_2b PF00587.20 gi|55379420|ref|YP_137270.1| - 2.9e-35 121.3 0.0 4.3e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|55379420|ref|YP_137270.1| - 1.3e-29 102.3 4.9 2e-29 101.7 3.4 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|55379420|ref|YP_137270.1| - 0.026 13.5 2.3 0.08 11.9 2.0 1.4 2 0 0 2 2 2 0 Autophagy protein Apg6 TBPIP PF07106.8 gi|55379420|ref|YP_137270.1| - 0.027 14.0 4.6 0.043 13.3 3.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|55379420|ref|YP_137270.1| - 0.03 12.7 2.4 0.044 12.1 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) GreA_GreB_N PF03449.10 gi|55379420|ref|YP_137270.1| - 0.073 13.1 9.4 0.17 11.9 6.5 1.6 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal Mnd1 PF03962.10 gi|55379420|ref|YP_137270.1| - 0.17 11.5 5.4 0.27 10.8 3.8 1.2 1 0 0 1 1 1 0 Mnd1 family Atg14 PF10186.4 gi|55379420|ref|YP_137270.1| - 0.35 9.7 2.6 0.47 9.3 1.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF724 PF05266.9 gi|55379420|ref|YP_137270.1| - 0.65 9.5 3.6 1 8.9 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TPR_MLP1_2 PF07926.7 gi|55379420|ref|YP_137270.1| - 1.1 8.9 8.5 2.2 8.0 5.9 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF1978 PF09321.5 gi|55379420|ref|YP_137270.1| - 1.4 8.2 10.3 0.59 9.5 5.6 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1978) V-SNARE PF05008.10 gi|55379420|ref|YP_137270.1| - 1.9 8.6 9.6 82 3.4 0.0 3.1 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus UPF0184 PF03670.8 gi|55379420|ref|YP_137270.1| - 2 8.6 12.1 2.2 8.5 4.8 3.0 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) DUF904 PF06005.7 gi|55379420|ref|YP_137270.1| - 2.8 8.2 11.1 6.5 7.1 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Usp PF00582.21 gi|55379421|ref|YP_137271.1| - 2.2e-33 115.3 4.0 2.6e-33 115.1 2.8 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|55379421|ref|YP_137271.1| - 0.00055 19.9 0.1 0.0014 18.7 0.0 1.6 1 1 1 2 2 2 1 GTP-binding GTPase N-terminal AP_endonuc_2 PF01261.19 gi|55379421|ref|YP_137271.1| - 0.0023 17.2 0.2 0.014 14.6 0.2 1.9 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel SRP54 PF00448.17 gi|55379421|ref|YP_137271.1| - 0.11 11.9 0.2 0.25 10.7 0.0 1.6 1 1 0 2 2 2 0 SRP54-type protein, GTPase domain DNA_photolyase PF00875.13 gi|55379421|ref|YP_137271.1| - 0.12 12.0 0.1 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase DXP_reductoisom PF02670.11 gi|55379421|ref|YP_137271.1| - 0.12 12.8 0.1 0.17 12.4 0.1 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lactamase_B PF00753.22 gi|55379422|ref|YP_137272.1| - 6.4e-21 74.8 10.9 1e-20 74.2 7.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55379422|ref|YP_137272.1| - 9e-05 22.1 0.2 0.00016 21.2 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TrkA_N PF02254.13 gi|55379423|ref|YP_137273.1| - 3.1e-33 114.2 2.0 4.9e-33 113.5 1.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|55379423|ref|YP_137273.1| - 4.5e-08 32.5 0.3 1.2e-07 31.2 0.0 1.8 2 0 0 2 2 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|55379423|ref|YP_137273.1| - 2.8e-07 30.7 0.4 7.8e-07 29.2 0.3 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|55379423|ref|YP_137273.1| - 7.6e-06 26.2 2.2 0.00016 22.0 0.6 2.6 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|55379423|ref|YP_137273.1| - 3.4e-05 23.3 0.4 0.00018 20.9 0.1 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|55379423|ref|YP_137273.1| - 6e-05 23.1 1.4 0.00023 21.2 1.0 1.9 2 0 0 2 2 2 1 NADH(P)-binding IlvN PF07991.7 gi|55379423|ref|YP_137273.1| - 0.00014 21.2 0.1 0.00033 20.0 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_3 PF01494.14 gi|55379423|ref|YP_137273.1| - 0.00019 20.5 0.7 0.00026 20.1 0.5 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|55379423|ref|YP_137273.1| - 0.00032 20.4 0.1 0.00071 19.3 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|55379423|ref|YP_137273.1| - 0.00046 19.6 0.1 0.00073 18.9 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.16 gi|55379423|ref|YP_137273.1| - 0.00085 18.8 0.2 0.0017 17.8 0.1 1.6 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|55379423|ref|YP_137273.1| - 0.0012 18.5 0.4 0.002 17.7 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|55379423|ref|YP_137273.1| - 0.0015 18.8 0.0 0.0024 18.1 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.22 gi|55379423|ref|YP_137273.1| - 0.0021 18.3 1.5 0.009 16.3 0.8 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55379423|ref|YP_137273.1| - 0.0024 16.8 0.6 0.0039 16.1 0.4 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55379423|ref|YP_137273.1| - 0.004 16.0 1.0 0.004 16.0 0.7 1.7 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|55379423|ref|YP_137273.1| - 0.0043 17.0 0.1 0.013 15.5 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|55379423|ref|YP_137273.1| - 0.0081 16.0 0.4 0.017 14.9 0.3 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.9 gi|55379423|ref|YP_137273.1| - 0.0087 15.9 0.6 0.023 14.5 0.1 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|55379423|ref|YP_137273.1| - 0.01 14.8 0.2 0.014 14.4 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Lycopene_cycl PF05834.7 gi|55379423|ref|YP_137273.1| - 0.012 14.5 0.1 0.017 14.0 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Rossmann-like PF10727.4 gi|55379423|ref|YP_137273.1| - 0.013 15.2 2.6 0.015 15.0 0.4 2.1 2 0 0 2 2 2 0 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|55379423|ref|YP_137273.1| - 0.016 14.4 0.2 0.038 13.1 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|55379423|ref|YP_137273.1| - 0.033 14.0 0.2 0.088 12.6 0.1 1.7 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CbiJ PF02571.9 gi|55379423|ref|YP_137273.1| - 0.046 13.0 0.7 0.12 11.7 0.3 1.7 1 1 1 2 2 2 0 Precorrin-6x reductase CbiJ/CobK HI0933_like PF03486.9 gi|55379423|ref|YP_137273.1| - 0.054 11.9 0.1 0.09 11.2 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|55379423|ref|YP_137273.1| - 0.072 13.1 0.3 0.14 12.1 0.2 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|55379423|ref|YP_137273.1| - 0.078 11.8 0.1 0.13 11.1 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|55379423|ref|YP_137273.1| - 0.12 11.6 1.1 1.3 8.2 0.1 2.2 1 1 1 2 2 2 0 NmrA-like family 4HBT PF03061.17 gi|55379424|ref|YP_137274.1| - 1.6e-14 53.7 0.4 2.3e-14 53.2 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|55379424|ref|YP_137274.1| - 1.1e-06 28.6 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|55379424|ref|YP_137274.1| - 1.3e-05 25.0 0.1 1.6e-05 24.8 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily NUDIX PF00293.23 gi|55379426|ref|YP_137276.1| - 4e-10 39.4 0.1 4.5e-10 39.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Thiolase_N PF00108.18 gi|55379427|ref|YP_137277.1| - 1.7e-77 259.9 1.5 2.9e-77 259.2 1.1 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|55379427|ref|YP_137277.1| - 8.6e-43 144.6 0.0 3.8e-42 142.5 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|55379427|ref|YP_137277.1| - 9.7e-06 25.2 1.4 1.6e-05 24.5 0.2 1.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain DUF581 PF04570.9 gi|55379427|ref|YP_137277.1| - 0.0079 15.4 0.1 0.015 14.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF581) DDE_Tnp_IS66 PF03050.9 gi|55379427|ref|YP_137277.1| - 0.064 12.4 0.1 0.12 11.5 0.0 1.4 1 1 0 1 1 1 0 Transposase IS66 family ACP_syn_III PF08545.5 gi|55379427|ref|YP_137277.1| - 0.46 10.1 3.0 2.1 8.0 0.0 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Pyridox_ox_2 PF12900.2 gi|55379428|ref|YP_137278.1| - 1.3e-16 60.7 0.0 1.4e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55379428|ref|YP_137278.1| - 7.1e-06 25.9 0.0 1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1508 PF07411.7 gi|55379430|ref|YP_137279.1| - 1.1e-88 290.5 9.3 3.8e-17 61.4 0.2 5.3 5 0 0 5 5 5 5 Domain of unknown function (DUF1508) YhhN PF07947.9 gi|55379430|ref|YP_137279.1| - 4.4e-05 22.9 1.9 7.5e-05 22.1 1.3 1.3 1 0 0 1 1 1 1 YhhN-like protein DUF2892 PF11127.3 gi|55379430|ref|YP_137279.1| - 0.022 14.5 10.5 0.12 12.2 0.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Bax1-I PF01027.15 gi|55379430|ref|YP_137279.1| - 0.041 13.4 3.6 0.062 12.9 2.5 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Spore_III_AF PF09581.5 gi|55379430|ref|YP_137279.1| - 0.072 12.9 0.3 0.13 12.1 0.2 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) DUF3748 PF12566.3 gi|55379430|ref|YP_137279.1| - 0.081 12.8 1.9 3.4 7.5 0.0 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF3748) IncA PF04156.9 gi|55379430|ref|YP_137279.1| - 0.21 11.1 0.0 0.21 11.1 0.0 2.3 2 0 0 2 2 2 0 IncA protein CRPA PF05745.6 gi|55379430|ref|YP_137279.1| - 0.25 11.1 0.1 0.74 9.5 0.0 1.8 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Tetraspannin PF00335.15 gi|55379430|ref|YP_137279.1| - 0.28 10.4 2.9 0.38 10.0 0.1 2.1 1 1 2 3 3 3 0 Tetraspanin family APG6 PF04111.7 gi|55379430|ref|YP_137279.1| - 0.61 9.0 6.4 0.93 8.4 4.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4164 PF13747.1 gi|55379430|ref|YP_137279.1| - 1.1 9.4 14.6 2.6 8.2 10.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF4149 PF13664.1 gi|55379430|ref|YP_137279.1| - 1.7 8.7 5.3 2.3 8.3 1.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) G0-G1_switch_2 PF15103.1 gi|55379430|ref|YP_137279.1| - 2.1 8.6 6.2 3.2 8.0 0.2 3.1 3 0 0 3 3 3 0 G0/G1 switch protein 2 ATP-synt_B PF00430.13 gi|55379430|ref|YP_137279.1| - 2.7 7.8 17.4 13 5.6 12.1 2.0 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) YrhK PF14145.1 gi|55379430|ref|YP_137279.1| - 5.5 6.7 9.8 0.75 9.5 0.4 2.9 1 1 1 3 3 3 0 YrhK-like protein HlyIII PF03006.15 gi|55379430|ref|YP_137279.1| - 9.7 5.5 6.7 22 4.3 4.7 1.4 1 1 0 1 1 1 0 Haemolysin-III related AAA PF00004.24 gi|55379429|ref|YP_137280.1| - 8.6e-39 132.7 0.0 1.9e-38 131.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|55379429|ref|YP_137280.1| - 1.2e-06 29.3 2.7 7e-06 26.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|55379429|ref|YP_137280.1| - 3.6e-06 26.7 0.0 2.3e-05 24.1 0.0 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|55379429|ref|YP_137280.1| - 2.9e-05 24.1 4.2 0.00069 19.6 2.0 3.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55379429|ref|YP_137280.1| - 5.2e-05 23.3 0.3 0.0024 18.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|55379429|ref|YP_137280.1| - 0.00015 22.0 0.9 0.0013 18.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|55379429|ref|YP_137280.1| - 0.00019 21.3 0.0 0.00054 19.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|55379429|ref|YP_137280.1| - 0.00052 20.0 0.2 0.0037 17.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|55379429|ref|YP_137280.1| - 0.0012 17.8 0.0 0.0023 17.0 0.0 1.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MMR_HSR1 PF01926.18 gi|55379429|ref|YP_137280.1| - 0.0027 17.6 0.0 0.0083 16.0 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|55379429|ref|YP_137280.1| - 0.0033 16.8 0.0 0.0085 15.5 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|55379429|ref|YP_137280.1| - 0.0038 16.6 1.1 0.036 13.4 0.0 2.7 1 1 2 3 3 3 1 AAA domain TIP49 PF06068.8 gi|55379429|ref|YP_137280.1| - 0.0041 15.9 0.0 0.0072 15.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|55379429|ref|YP_137280.1| - 0.0044 15.9 0.1 0.0072 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|55379429|ref|YP_137280.1| - 0.0052 16.7 1.0 0.0087 15.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Cytidylate_kin2 PF13189.1 gi|55379429|ref|YP_137280.1| - 0.0079 16.1 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|55379429|ref|YP_137280.1| - 0.0093 16.0 0.0 0.032 14.2 0.0 1.9 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|55379429|ref|YP_137280.1| - 0.0094 15.6 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|55379429|ref|YP_137280.1| - 0.0097 15.7 0.0 0.027 14.3 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase Mg_chelatase PF01078.16 gi|55379429|ref|YP_137280.1| - 0.016 14.3 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|55379429|ref|YP_137280.1| - 0.025 14.9 0.0 0.061 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|55379429|ref|YP_137280.1| - 0.037 13.8 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|55379429|ref|YP_137280.1| - 0.041 13.4 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|55379429|ref|YP_137280.1| - 0.045 13.6 0.0 0.14 12.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|55379429|ref|YP_137280.1| - 0.046 13.2 0.0 0.078 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|55379429|ref|YP_137280.1| - 0.053 13.1 0.0 3.2 7.3 0.0 2.3 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|55379429|ref|YP_137280.1| - 0.057 13.5 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|55379429|ref|YP_137280.1| - 0.089 11.8 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|55379429|ref|YP_137280.1| - 0.12 11.9 0.0 0.29 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.2 gi|55379432|ref|YP_137282.1| - 8.1e-17 61.3 0.7 1.2e-16 60.8 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|55379432|ref|YP_137282.1| - 2.6e-07 30.5 4.2 4.1e-07 29.8 2.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3325 PF11804.3 gi|55379433|ref|YP_137283.1| - 0.016 15.1 1.4 0.019 14.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) HTH_20 PF12840.2 gi|55379436|ref|YP_137286.1| - 8.1e-06 25.5 0.0 1.8e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|55379436|ref|YP_137286.1| - 0.93 9.3 10.4 0.33 10.7 2.6 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|55379436|ref|YP_137286.1| - 1.1 9.0 0.0 1.1 9.0 0.0 2.7 2 1 1 3 3 3 0 Zinc-ribbon PhnA_Zn_Ribbon PF08274.7 gi|55379436|ref|YP_137286.1| - 4.9 7.0 8.1 9.3 6.1 0.1 3.5 3 0 0 3 3 3 0 PhnA Zinc-Ribbon GTP_EFTU PF00009.22 gi|55379437|ref|YP_137287.1| - 9.8e-42 142.5 0.2 1.4e-41 141.9 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|55379437|ref|YP_137287.1| - 1.3e-26 92.3 0.0 2.3e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.18 gi|55379437|ref|YP_137287.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.20 gi|55379437|ref|YP_137287.1| - 0.0018 18.3 1.1 0.0054 16.8 0.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|55379437|ref|YP_137287.1| - 0.0051 16.2 0.3 0.046 13.2 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|55379437|ref|YP_137287.1| - 0.0066 15.7 0.3 2.2 7.5 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B SRPRB PF09439.5 gi|55379437|ref|YP_137287.1| - 0.04 13.1 0.1 1.1 8.3 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|55379437|ref|YP_137287.1| - 0.051 14.0 0.0 0.17 12.3 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|55379437|ref|YP_137287.1| - 0.1 12.3 0.1 0.42 10.4 0.1 2.3 1 1 0 1 1 1 0 Dynamin family Fcf1 PF04900.7 gi|55379438|ref|YP_137288.1| - 7.3e-06 26.0 0.0 8.5e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|55379438|ref|YP_137288.1| - 6.1e-05 22.4 0.5 8.3e-05 22.0 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.1 gi|55379438|ref|YP_137288.1| - 0.013 16.1 4.7 0.013 16.1 3.3 1.9 1 1 1 2 2 2 0 PIN domain PIN_4 PF13638.1 gi|55379438|ref|YP_137288.1| - 0.039 14.0 0.0 0.15 12.1 0.0 1.8 1 1 1 2 2 2 0 PIN domain PIN PF01850.16 gi|55379438|ref|YP_137288.1| - 0.067 13.5 0.7 0.13 12.6 0.4 1.4 1 1 1 2 2 2 0 PIN domain DUF1471 PF07338.8 gi|55379438|ref|YP_137288.1| - 3.9 7.1 5.1 0.69 9.5 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) S1 PF00575.18 gi|55379439|ref|YP_137289.1| - 1.7e-14 53.6 0.2 3.3e-14 52.7 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|55379439|ref|YP_137289.1| - 2.5e-13 49.9 0.0 4.1e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 Spt4 PF06093.8 gi|55379440|ref|YP_137290.1| - 2.5e-13 49.7 0.2 3.2e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger HypA PF01155.14 gi|55379440|ref|YP_137290.1| - 0.091 12.4 0.5 0.11 12.2 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|55379440|ref|YP_137290.1| - 0.35 10.5 6.1 0.77 9.4 0.8 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.3 gi|55379440|ref|YP_137290.1| - 4.1 7.4 5.3 17 5.5 0.1 2.2 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF359 PF04019.7 gi|55379441|ref|YP_137291.1| - 1e-38 131.4 0.0 1.2e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF359) UBA_4 PF14555.1 gi|55379441|ref|YP_137291.1| - 0.031 13.7 0.0 0.074 12.5 0.0 1.6 1 0 0 1 1 1 0 UBA-like domain zf-C2HC5 PF06221.8 gi|55379442|ref|YP_137292.1| - 0.012 15.2 1.6 0.016 14.9 1.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.7 gi|55379442|ref|YP_137292.1| - 0.015 15.0 3.9 0.019 14.7 2.7 1.2 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|55379442|ref|YP_137292.1| - 0.028 14.1 3.5 0.035 13.8 2.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|55379442|ref|YP_137292.1| - 0.032 14.0 5.8 0.039 13.7 4.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.4 gi|55379442|ref|YP_137292.1| - 0.034 13.2 1.5 0.046 12.7 1.0 1.2 1 0 0 1 1 1 0 Mu-like prophage protein Com TerY-C PF15616.1 gi|55379442|ref|YP_137292.1| - 0.034 14.0 3.0 0.039 13.8 2.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Transp_Tc5_C PF04236.10 gi|55379442|ref|YP_137292.1| - 0.055 13.6 2.5 0.061 13.5 1.7 1.1 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain zf-HIT PF04438.11 gi|55379442|ref|YP_137292.1| - 0.057 13.0 0.7 0.057 13.0 0.5 2.1 1 1 1 2 2 2 0 HIT zinc finger HypA PF01155.14 gi|55379442|ref|YP_137292.1| - 0.14 11.8 5.0 0.16 11.6 3.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-UBP PF02148.14 gi|55379442|ref|YP_137292.1| - 0.31 11.1 2.6 0.91 9.6 1.8 1.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-H2C2_2 PF13465.1 gi|55379442|ref|YP_137292.1| - 0.32 11.3 0.5 0.32 11.3 0.4 1.8 1 1 0 1 1 1 0 Zinc-finger double domain Elf1 PF05129.8 gi|55379442|ref|YP_137292.1| - 0.36 10.5 5.0 1.6 8.4 3.5 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|55379442|ref|YP_137292.1| - 0.41 10.3 3.7 0.53 9.9 2.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|55379442|ref|YP_137292.1| - 0.52 10.7 4.1 0.5 10.8 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|55379442|ref|YP_137292.1| - 0.67 9.9 9.0 2.2 8.3 2.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|55379442|ref|YP_137292.1| - 0.7 9.2 4.2 0.39 10.0 0.2 2.1 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2_6 PF13912.1 gi|55379442|ref|YP_137292.1| - 0.88 9.5 3.3 1.9 8.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|55379442|ref|YP_137292.1| - 1.7 8.1 5.2 0.68 9.5 0.2 1.8 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|55379442|ref|YP_137292.1| - 1.8 7.9 7.1 4.5 6.6 4.9 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|55379442|ref|YP_137292.1| - 2.8 7.6 5.5 12 5.5 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Opy2 PF09463.5 gi|55379442|ref|YP_137292.1| - 5.1 7.2 7.9 14 5.8 5.5 1.8 1 1 0 1 1 1 0 Opy2 protein UPF0020 PF01170.13 gi|55379443|ref|YP_137293.1| - 4.1e-25 88.3 0.0 2.6e-24 85.7 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|55379443|ref|YP_137293.1| - 8.2e-08 32.2 0.3 8.2e-08 32.2 0.2 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379443|ref|YP_137293.1| - 0.0018 17.9 0.0 0.0046 16.5 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379443|ref|YP_137293.1| - 0.0023 18.4 0.6 0.0083 16.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|55379443|ref|YP_137293.1| - 0.0043 16.9 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|55379443|ref|YP_137293.1| - 0.012 16.1 0.0 0.036 14.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379443|ref|YP_137293.1| - 0.07 13.4 0.0 0.33 11.3 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|55379443|ref|YP_137293.1| - 0.21 10.6 0.0 0.34 9.9 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase HisG PF01634.13 gi|55379444|ref|YP_137294.1| - 3e-49 166.7 0.2 5.2e-49 165.9 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|55379444|ref|YP_137294.1| - 1.9e-25 88.6 0.1 4.1e-25 87.5 0.1 1.6 2 0 0 2 2 2 1 HisG, C-terminal domain MFS_1 PF07690.11 gi|55379446|ref|YP_137295.1| - 1.8e-40 138.7 52.3 3.2e-30 105.0 20.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|55379446|ref|YP_137295.1| - 9e-07 27.6 16.9 4e-06 25.4 4.4 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|55379446|ref|YP_137295.1| - 0.00022 20.9 4.9 0.18 11.6 0.1 3.5 3 0 0 3 3 3 2 MFS_1 like family UNC-93 PF05978.11 gi|55379446|ref|YP_137295.1| - 0.01 15.3 6.7 0.061 12.8 0.9 2.5 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 OATP PF03137.15 gi|55379446|ref|YP_137295.1| - 0.05 11.6 0.0 0.13 10.3 0.0 1.6 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family PLAC8 PF04749.12 gi|55379446|ref|YP_137295.1| - 0.05 14.1 0.1 0.21 12.1 0.1 2.1 1 0 0 1 1 1 0 PLAC8 family LacY_symp PF01306.14 gi|55379446|ref|YP_137295.1| - 0.16 10.4 7.7 0.25 9.8 0.1 2.5 2 1 0 2 2 2 0 LacY proton/sugar symporter Amidohydro_1 PF01979.15 gi|55379445|ref|YP_137296.1| - 5.8e-48 164.2 4.6 7.4e-48 163.8 3.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|55379445|ref|YP_137296.1| - 2.4e-10 40.9 18.5 5.1e-10 39.8 12.8 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|55379445|ref|YP_137296.1| - 2.1e-08 33.8 0.7 7.6e-08 32.0 0.1 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55379445|ref|YP_137296.1| - 4.7e-08 32.6 15.7 1.5e-06 27.7 6.6 2.3 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|55379445|ref|YP_137296.1| - 1.2e-05 24.4 0.0 2.8e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Adenosine/AMP deaminase MG1 PF11974.3 gi|55379447|ref|YP_137297.1| - 0.0078 16.7 3.8 0.016 15.7 2.7 1.6 1 0 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain AdoHcyase PF05221.12 gi|55379448|ref|YP_137298.1| - 1.4e-53 181.5 0.0 1.8e-53 181.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|55379448|ref|YP_137298.1| - 1.4e-48 164.7 0.4 1.4e-48 164.7 0.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55379448|ref|YP_137298.1| - 2.5e-10 39.8 0.1 4.6e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|55379448|ref|YP_137298.1| - 2.1e-05 23.9 0.6 4.2e-05 22.9 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|55379448|ref|YP_137298.1| - 0.0028 17.2 0.1 0.0046 16.5 0.1 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|55379448|ref|YP_137298.1| - 0.0056 17.0 0.1 0.015 15.7 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|55379448|ref|YP_137298.1| - 0.0072 16.3 0.1 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain Hexapep PF00132.19 gi|55379449|ref|YP_137299.1| - 1.2e-15 56.1 11.8 4.8e-10 38.4 1.6 4.2 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55379449|ref|YP_137299.1| - 4.4e-08 32.5 11.9 2.4e-07 30.1 1.9 3.7 3 2 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|55379449|ref|YP_137299.1| - 0.039 12.5 0.1 0.067 11.7 0.0 1.4 1 1 0 1 1 1 0 L-fucokinase DUF2613 PF11021.3 gi|55379449|ref|YP_137299.1| - 0.92 9.2 4.1 1.8 8.3 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DNA_primase_lrg PF04104.9 gi|55379451|ref|YP_137301.1| - 5.3e-37 127.4 0.0 9.3e-37 126.6 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF1722 PF08349.6 gi|55379451|ref|YP_137301.1| - 0.073 12.9 0.0 1.4 8.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1722) Bax1-I PF01027.15 gi|55379452|ref|YP_137302.1| - 0.0032 17.0 0.7 0.0042 16.7 0.5 1.2 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 PRA1 PF03208.14 gi|55379452|ref|YP_137302.1| - 0.018 14.3 1.6 0.021 14.1 1.1 1.0 1 0 0 1 1 1 0 PRA1 family protein DUF621 PF04789.10 gi|55379452|ref|YP_137302.1| - 0.042 12.8 0.0 0.047 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF621) MMPL PF03176.10 gi|55379452|ref|YP_137302.1| - 0.08 11.6 6.3 0.093 11.4 4.4 1.0 1 0 0 1 1 1 0 MMPL family PIRT PF15099.1 gi|55379452|ref|YP_137302.1| - 0.11 11.6 0.8 0.12 11.5 0.5 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family Tetraspannin PF00335.15 gi|55379452|ref|YP_137302.1| - 0.52 9.5 4.0 0.64 9.2 2.8 1.0 1 0 0 1 1 1 0 Tetraspanin family Tad PF13400.1 gi|55379452|ref|YP_137302.1| - 1.7 8.7 8.3 7.2 6.7 0.3 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like ABC2_membrane_4 PF12730.2 gi|55379452|ref|YP_137302.1| - 9.9 5.2 8.1 11 5.0 5.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SWIM PF04434.12 gi|55379453|ref|YP_137303.1| - 5e-05 22.6 0.1 0.0001 21.6 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger Nudix_N_2 PF14803.1 gi|55379453|ref|YP_137303.1| - 0.0076 15.9 1.3 0.021 14.5 0.1 2.4 2 0 0 2 2 2 1 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|55379453|ref|YP_137303.1| - 7.5 6.1 6.9 28 4.3 0.1 3.1 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Hjc PF01870.13 gi|55379454|ref|YP_137304.1| - 4.1e-27 93.6 0.0 5.6e-27 93.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF4382 PF14321.1 gi|55379455|ref|YP_137305.1| - 1.3e-18 67.4 0.7 1.1e-16 61.1 0.5 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|55379455|ref|YP_137305.1| - 0.52 10.4 3.9 0.95 9.6 2.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1673 PF07895.6 gi|55379456|ref|YP_137306.1| - 0.0059 16.1 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) Virul_fac_BrkB PF03631.10 gi|55379456|ref|YP_137306.1| - 0.033 13.5 10.2 0.071 12.4 7.1 1.5 1 1 0 1 1 1 0 Virulence factor BrkB Glucos_trans_II PF14264.1 gi|55379456|ref|YP_137306.1| - 0.038 12.9 0.2 0.038 12.9 0.2 1.8 3 0 0 3 3 3 0 Glucosyl transferase GtrII SPC25 PF06703.6 gi|55379456|ref|YP_137306.1| - 0.33 10.5 1.9 0.79 9.2 1.3 1.7 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Cation_ATPase_C PF00689.16 gi|55379456|ref|YP_137306.1| - 2 7.9 5.1 3.6 7.0 0.3 2.0 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus ABC2_membrane_4 PF12730.2 gi|55379456|ref|YP_137306.1| - 2 7.4 7.4 13 4.8 5.6 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein Abhydrolase_6 PF12697.2 gi|55379457|ref|YP_137307.1| - 1.8e-23 83.6 8.4 2.1e-23 83.3 5.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55379457|ref|YP_137307.1| - 1.3e-12 47.7 0.1 3.7e-12 46.1 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55379457|ref|YP_137307.1| - 5.1e-12 45.8 0.1 1.5e-11 44.3 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold FSH1 PF03959.8 gi|55379457|ref|YP_137307.1| - 0.11 11.8 0.0 1.6 8.0 0.0 2.0 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.5 gi|55379457|ref|YP_137307.1| - 0.13 12.1 0.2 0.3 11.0 0.1 1.5 1 1 0 1 1 1 0 TAP-like protein PCNA_N PF00705.13 gi|55379458|ref|YP_137308.1| - 1.6e-09 37.3 0.1 3.2e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|55379458|ref|YP_137308.1| - 7.7e-05 22.6 0.0 0.00015 21.7 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DUF2993 PF11209.3 gi|55379458|ref|YP_137308.1| - 0.016 15.1 0.1 0.044 13.6 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) Cu-oxidase_3 PF07732.10 gi|55379459|ref|YP_137309.1| - 4e-13 49.1 0.1 7.4e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|55379459|ref|YP_137309.1| - 5.8e-08 32.3 0.4 5.4e-06 25.9 0.0 2.8 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.15 gi|55379459|ref|YP_137309.1| - 6.3e-05 23.1 0.5 0.002 18.3 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|55379459|ref|YP_137309.1| - 0.0015 18.3 0.0 0.0046 16.8 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|55379459|ref|YP_137309.1| - 0.62 10.2 3.5 1.4 9.0 2.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FtsJ PF01728.14 gi|55379460|ref|YP_137310.1| - 5.6e-52 176.3 0.0 6.7e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|55379460|ref|YP_137310.1| - 9.5e-15 54.1 1.6 1.8e-14 53.2 1.1 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|55379460|ref|YP_137310.1| - 0.015 15.8 0.1 0.041 14.4 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379460|ref|YP_137310.1| - 0.016 14.8 0.0 0.057 13.0 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379460|ref|YP_137310.1| - 0.017 15.1 0.1 0.037 14.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379460|ref|YP_137310.1| - 0.033 13.9 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NSP13 PF06460.7 gi|55379460|ref|YP_137310.1| - 0.034 13.0 0.0 0.05 12.4 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 DUF165 PF02592.10 gi|55379461|ref|YP_137311.1| - 2e-41 141.5 4.6 2e-41 141.5 3.2 1.8 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 DUF418 PF04235.7 gi|55379461|ref|YP_137311.1| - 8.1 6.0 15.0 4.9 6.7 6.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF418) Caps_synth_CapC PF14102.1 gi|55379461|ref|YP_137311.1| - 8.1 6.5 10.8 0.27 11.3 1.7 2.6 2 1 1 3 3 3 0 Capsule biosynthesis CapC RHH_1 PF01402.16 gi|55379462|ref|YP_137312.1| - 0.00045 19.9 0.2 0.0012 18.5 0.0 1.8 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|55379463|ref|YP_137313.1| - 8.7e-61 205.0 51.5 4.8e-37 127.4 10.3 3.3 3 2 1 4 4 4 2 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|55379464|ref|YP_137314.1| - 3.5e-42 144.2 11.1 5.3e-42 143.6 7.7 1.3 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF2523 PF10734.4 gi|55379464|ref|YP_137314.1| - 4 7.7 11.2 0.49 10.6 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2523) His_Phos_1 PF00300.17 gi|55379465|ref|YP_137315.1| - 4e-34 118.0 0.0 4.8e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.17 gi|55379465|ref|YP_137315.1| - 0.0016 17.8 1.2 0.0042 16.4 0.9 1.6 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) Asn_synthase PF00733.16 gi|55379466|ref|YP_137316.1| - 1.1e-10 41.4 0.2 1.8e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|55379466|ref|YP_137316.1| - 1.4e-09 36.9 0.1 4.5e-06 25.4 0.1 2.5 2 1 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|55379466|ref|YP_137316.1| - 3e-09 36.1 0.0 5.9e-09 35.1 0.0 1.4 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|55379466|ref|YP_137316.1| - 0.00021 20.6 0.0 0.0006 19.1 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|55379466|ref|YP_137316.1| - 0.0009 18.7 0.1 0.0034 16.8 0.1 2.0 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|55379466|ref|YP_137316.1| - 0.01 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase DUF208 PF02677.9 gi|55379466|ref|YP_137316.1| - 0.048 13.4 0.1 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 PAPS_reduct PF01507.14 gi|55379466|ref|YP_137316.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family MutS_V PF00488.16 gi|55379467|ref|YP_137317.1| - 6.8e-08 32.2 0.0 3.7e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 MutS domain V HHH PF00633.18 gi|55379467|ref|YP_137317.1| - 2.9e-06 26.6 1.4 0.0017 17.9 0.1 3.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|55379467|ref|YP_137317.1| - 1.4e-05 25.1 1.3 0.00013 22.1 0.9 2.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|55379467|ref|YP_137317.1| - 0.027 13.8 1.4 0.23 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain IMS_HHH PF11798.3 gi|55379467|ref|YP_137317.1| - 0.052 13.6 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif AAA_21 PF13304.1 gi|55379467|ref|YP_137317.1| - 0.35 10.7 0.0 20 5.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|55379468|ref|YP_137318.1| - 1.8e-13 50.9 0.1 8.5e-12 45.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|55379468|ref|YP_137318.1| - 1.7e-09 37.9 0.0 3.6e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379468|ref|YP_137318.1| - 1.3e-06 28.6 0.0 3e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|55379468|ref|YP_137318.1| - 1.9e-06 27.5 0.0 7.4e-06 25.5 0.0 2.1 1 0 0 1 1 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|55379468|ref|YP_137318.1| - 0.00055 19.7 0.0 0.0017 18.1 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|55379468|ref|YP_137318.1| - 0.00098 18.8 0.2 0.0032 17.1 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_35 PF14516.1 gi|55379468|ref|YP_137318.1| - 0.0022 16.6 0.1 0.026 13.1 0.1 2.1 1 1 0 1 1 1 1 AAA-like domain Gtr1_RagA PF04670.7 gi|55379468|ref|YP_137318.1| - 0.0042 16.2 0.0 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region IstB_IS21 PF01695.12 gi|55379468|ref|YP_137318.1| - 0.0055 16.1 0.0 2.4 7.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|55379468|ref|YP_137318.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|55379468|ref|YP_137318.1| - 0.006 16.4 0.0 0.013 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|55379468|ref|YP_137318.1| - 0.0083 15.0 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein RuvB_N PF05496.7 gi|55379468|ref|YP_137318.1| - 0.0091 15.0 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|55379468|ref|YP_137318.1| - 0.011 15.4 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|55379468|ref|YP_137318.1| - 0.011 15.6 0.0 0.071 13.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55379468|ref|YP_137318.1| - 0.012 16.3 0.2 0.049 14.4 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55379468|ref|YP_137318.1| - 0.017 14.7 0.3 0.14 11.6 0.0 2.3 2 1 1 3 3 3 0 AAA domain DUF815 PF05673.8 gi|55379468|ref|YP_137318.1| - 0.018 13.9 0.0 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|55379468|ref|YP_137318.1| - 0.027 14.7 0.0 0.18 12.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|55379468|ref|YP_137318.1| - 0.032 13.7 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|55379468|ref|YP_137318.1| - 0.038 12.6 0.0 0.065 11.9 0.0 1.5 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|55379468|ref|YP_137318.1| - 0.073 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|55379468|ref|YP_137318.1| - 0.075 12.7 0.0 0.2 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Ribonuc_L-PSP PF01042.16 gi|55379472|ref|YP_137322.1| - 5.9e-27 93.8 0.6 6.5e-27 93.6 0.4 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MatE PF01554.13 gi|55379473|ref|YP_137323.1| - 2.2e-53 180.2 25.6 2.8e-27 95.3 4.6 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|55379473|ref|YP_137323.1| - 3.3e-07 30.2 12.5 3.3e-07 30.2 8.6 4.3 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain SBP_bac_8 PF13416.1 gi|55379474|ref|YP_137324.1| - 5.3e-22 78.8 0.0 6.8e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|55379474|ref|YP_137324.1| - 7.6e-13 48.3 0.0 1.6e-12 47.2 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55379474|ref|YP_137324.1| - 1.5e-11 44.6 0.1 2.5e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|55379474|ref|YP_137324.1| - 0.00029 20.5 0.0 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55379474|ref|YP_137324.1| - 0.46 10.6 6.9 1 9.5 4.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|55379475|ref|YP_137325.1| - 1.9e-23 83.2 0.0 2.7e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55379475|ref|YP_137325.1| - 1.1e-11 44.5 2.6 1e-09 38.2 0.3 3.7 1 1 1 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|55379475|ref|YP_137325.1| - 1.1e-05 25.5 0.0 1.5e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|55379475|ref|YP_137325.1| - 0.00029 20.8 3.5 0.098 12.7 0.4 3.1 3 0 0 3 3 3 2 TOBE domain SMC_N PF02463.14 gi|55379475|ref|YP_137325.1| - 0.028 13.6 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_1 PF00528.17 gi|55379476|ref|YP_137326.1| - 2.6e-15 56.4 17.7 3.2e-15 56.1 11.4 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55379477|ref|YP_137327.1| - 1.6e-13 50.6 19.7 1.6e-13 50.6 13.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MaoC_dehydratas PF01575.14 gi|55379478|ref|YP_137328.1| - 3.2e-07 29.7 0.0 8.6e-07 28.3 0.0 1.7 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.17 gi|55379478|ref|YP_137328.1| - 0.00065 19.7 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydrat_N PF13452.1 gi|55379478|ref|YP_137328.1| - 0.004 16.9 0.1 0.069 12.9 0.0 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Fer4_15 PF13459.1 gi|55379479|ref|YP_137329.1| - 3.9e-17 62.5 4.4 4.7e-17 62.3 3.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|55379479|ref|YP_137329.1| - 3.4e-07 30.5 2.6 7.1e-07 29.5 1.8 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|55379479|ref|YP_137329.1| - 0.012 15.4 0.2 0.12 12.1 0.1 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.1 gi|55379479|ref|YP_137329.1| - 0.043 13.6 0.1 0.081 12.7 0.1 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55379479|ref|YP_137329.1| - 0.047 13.2 1.7 2.4 7.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|55379479|ref|YP_137329.1| - 0.071 13.4 0.3 17 5.8 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DEAD PF00270.24 gi|55379480|ref|YP_137330.1| - 1.2e-26 93.1 0.0 2.2e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|55379480|ref|YP_137330.1| - 8.4e-08 31.9 0.0 1.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|55379480|ref|YP_137330.1| - 4.8e-06 26.6 6.1 4.9e-06 26.6 0.5 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|55379480|ref|YP_137330.1| - 3.6e-05 23.6 0.0 6.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|55379480|ref|YP_137330.1| - 0.0038 16.7 0.0 0.011 15.2 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CGI-121 PF08617.5 gi|55379481|ref|YP_137331.1| - 5.9e-18 65.0 0.0 6.8e-18 64.8 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PGDYG PF14083.1 gi|55379481|ref|YP_137331.1| - 0.044 14.1 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 PGDYG protein Rubi_NSP_C PF12601.3 gi|55379481|ref|YP_137331.1| - 0.063 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Rubivirus non-structural protein vWA-TerF-like PF10138.4 gi|55379482|ref|YP_137332.1| - 0.15 11.8 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 vWA found in TerF C terminus Oxidored_FMN PF00724.15 gi|55379483|ref|YP_137333.1| - 3.2e-23 82.2 0.0 2.4e-20 72.8 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|55379483|ref|YP_137333.1| - 0.2 10.8 0.0 0.39 9.9 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Abhydrolase_6 PF12697.2 gi|55379484|ref|YP_137334.1| - 4.3e-42 144.5 5.2 4.9e-42 144.3 3.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55379484|ref|YP_137334.1| - 3.6e-17 62.4 0.1 6.5e-16 58.3 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55379484|ref|YP_137334.1| - 1.3e-15 57.6 0.1 3.3e-14 53.0 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|55379484|ref|YP_137334.1| - 0.0016 17.8 0.0 0.7 9.2 0.0 3.0 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Thioesterase PF00975.15 gi|55379484|ref|YP_137334.1| - 0.0074 16.5 0.0 0.0092 16.2 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|55379484|ref|YP_137334.1| - 0.012 15.4 0.0 0.088 12.6 0.0 2.3 2 0 0 2 2 2 0 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|55379484|ref|YP_137334.1| - 0.017 15.0 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Ndr PF03096.9 gi|55379484|ref|YP_137334.1| - 0.18 10.2 0.0 0.43 9.0 0.0 1.8 1 1 0 1 1 1 0 Ndr family MaoC_dehydratas PF01575.14 gi|55379485|ref|YP_137335.1| - 1.2e-25 89.2 0.0 2.1e-25 88.4 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|55379485|ref|YP_137335.1| - 5.8e-12 45.5 0.0 1.6e-11 44.1 0.0 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|55379485|ref|YP_137335.1| - 0.0018 18.3 0.0 0.0056 16.7 0.0 1.8 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|55379485|ref|YP_137335.1| - 0.012 16.0 0.0 0.025 15.0 0.0 1.5 1 1 0 1 1 1 0 Thioesterase-like superfamily DUF3454 PF11936.3 gi|55379485|ref|YP_137335.1| - 0.12 12.5 1.8 0.2 11.8 0.6 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3454) Antitoxin-MazE PF04014.13 gi|55379486|ref|YP_137336.1| - 0.03 14.0 0.7 0.061 13.0 0.5 1.5 1 1 0 1 1 1 0 Antidote-toxin recognition MazE FlxA PF14282.1 gi|55379487|ref|YP_137337.1| - 0.00014 21.7 2.4 0.00014 21.7 1.7 2.3 2 0 0 2 2 2 1 FlxA-like protein Apolipoprotein PF01442.13 gi|55379487|ref|YP_137337.1| - 0.00059 19.3 11.4 0.00059 19.3 7.9 2.2 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.7 gi|55379487|ref|YP_137337.1| - 0.0017 18.5 13.0 0.0093 16.1 3.8 3.4 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|55379487|ref|YP_137337.1| - 0.005 16.5 6.3 0.71 9.5 0.3 2.7 1 1 2 3 3 3 2 Apolipoprotein O Filament PF00038.16 gi|55379487|ref|YP_137337.1| - 0.0063 16.0 20.9 0.0082 15.6 14.5 1.0 1 0 0 1 1 1 1 Intermediate filament protein DUF812 PF05667.6 gi|55379487|ref|YP_137337.1| - 0.0069 14.9 12.9 0.008 14.7 9.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Baculo_PEP_C PF04513.7 gi|55379487|ref|YP_137337.1| - 0.01 15.6 8.7 1.2 8.9 0.6 2.9 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cauli_AT PF03233.8 gi|55379487|ref|YP_137337.1| - 0.016 14.8 1.3 0.016 14.8 0.9 1.8 1 1 1 2 2 2 0 Aphid transmission protein Prominin PF05478.6 gi|55379487|ref|YP_137337.1| - 0.019 12.5 8.5 0.024 12.2 5.9 1.1 1 0 0 1 1 1 0 Prominin DUF3584 PF12128.3 gi|55379487|ref|YP_137337.1| - 0.024 12.0 15.8 0.03 11.6 10.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rsd_AlgQ PF04353.8 gi|55379487|ref|YP_137337.1| - 0.025 14.2 7.1 0.015 15.0 3.3 1.6 1 1 1 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AAA_13 PF13166.1 gi|55379487|ref|YP_137337.1| - 0.028 12.9 10.3 0.034 12.6 7.1 1.0 1 0 0 1 1 1 0 AAA domain Syntaxin PF00804.20 gi|55379487|ref|YP_137337.1| - 0.036 14.2 1.8 0.036 14.2 1.2 2.9 3 1 0 3 3 3 0 Syntaxin IL6 PF00489.12 gi|55379487|ref|YP_137337.1| - 0.037 13.6 3.3 1.2 8.7 0.0 2.8 1 1 1 3 3 3 0 Interleukin-6/G-CSF/MGF family DUF883 PF05957.8 gi|55379487|ref|YP_137337.1| - 0.051 13.9 11.0 0.19 12.1 4.3 2.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF4217 PF13959.1 gi|55379487|ref|YP_137337.1| - 0.055 13.0 0.3 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4217) T2SF PF00482.18 gi|55379487|ref|YP_137337.1| - 0.071 13.0 1.7 0.48 10.3 1.1 2.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F ISG65-75 PF11727.3 gi|55379487|ref|YP_137337.1| - 0.077 12.0 8.5 0.099 11.6 5.6 1.6 1 1 0 1 1 1 0 Invariant surface glycoprotein Barstar PF01337.13 gi|55379487|ref|YP_137337.1| - 0.077 12.8 2.0 5.1 7.0 0.4 2.7 1 1 2 3 3 3 0 Barstar (barnase inhibitor) YtxH PF12732.2 gi|55379487|ref|YP_137337.1| - 0.099 13.0 11.1 1.2e+02 3.1 7.7 3.1 1 1 0 1 1 1 0 YtxH-like protein HrpB7 PF09486.5 gi|55379487|ref|YP_137337.1| - 0.14 12.0 13.7 1.1 9.1 5.4 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Spc7 PF08317.6 gi|55379487|ref|YP_137337.1| - 0.17 10.5 10.5 0.1 11.2 5.1 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein PilJ PF13675.1 gi|55379487|ref|YP_137337.1| - 0.2 12.0 11.0 0.081 13.2 1.6 2.8 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DASH_Duo1 PF08651.5 gi|55379487|ref|YP_137337.1| - 0.28 10.7 4.3 3 7.4 0.2 3.2 2 1 1 3 3 3 0 DASH complex subunit Duo1 Syntaxin-6_N PF09177.6 gi|55379487|ref|YP_137337.1| - 0.46 10.9 12.1 0.38 11.1 3.5 2.8 1 1 1 3 3 3 0 Syntaxin 6, N-terminal MutS_III PF05192.13 gi|55379487|ref|YP_137337.1| - 0.49 10.1 2.3 1.4 8.6 1.6 1.8 1 1 0 1 1 1 0 MutS domain III DUF948 PF06103.6 gi|55379487|ref|YP_137337.1| - 0.51 10.2 10.7 1.7 8.5 2.3 3.1 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) PMC2NT PF08066.7 gi|55379487|ref|YP_137337.1| - 0.52 10.6 10.9 0.72 10.1 1.5 2.7 1 1 1 2 2 2 0 PMC2NT (NUC016) domain Sec8_exocyst PF04048.9 gi|55379487|ref|YP_137337.1| - 0.56 9.8 8.3 0.19 11.3 2.3 2.3 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain SF-assemblin PF06705.6 gi|55379487|ref|YP_137337.1| - 0.58 9.2 15.1 0.093 11.8 7.2 1.9 1 1 1 2 2 2 0 SF-assemblin/beta giardin CAP_N PF01213.14 gi|55379487|ref|YP_137337.1| - 0.58 9.3 4.7 0.84 8.8 3.0 1.5 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF489 PF04356.7 gi|55379487|ref|YP_137337.1| - 0.58 9.7 4.4 0.41 10.2 1.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF489) DUF1664 PF07889.7 gi|55379487|ref|YP_137337.1| - 0.6 9.9 11.9 1.5 8.5 0.5 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Tweety PF04906.8 gi|55379487|ref|YP_137337.1| - 0.81 8.0 6.5 1.6 7.0 0.6 2.4 1 1 2 3 3 3 0 Tweety Allexi_40kDa PF05549.6 gi|55379487|ref|YP_137337.1| - 0.9 8.7 5.5 1.4 8.1 0.2 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein His_Phos_1 PF00300.17 gi|55379487|ref|YP_137337.1| - 0.97 9.5 4.6 1.4 8.9 3.1 1.4 1 1 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) DUF4449 PF14613.1 gi|55379487|ref|YP_137337.1| - 1.2 9.0 9.3 0.96 9.3 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4449) MIS13 PF08202.6 gi|55379487|ref|YP_137337.1| - 1.3 7.9 9.7 1.2e+02 1.5 6.7 2.1 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Spectrin PF00435.16 gi|55379487|ref|YP_137337.1| - 1.4 9.2 13.8 0.43 10.8 5.1 2.6 1 1 1 2 2 2 0 Spectrin repeat DUF3138 PF11336.3 gi|55379487|ref|YP_137337.1| - 1.6 6.8 7.5 0.72 7.9 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) DUF4618 PF15397.1 gi|55379487|ref|YP_137337.1| - 1.8 7.8 15.1 0.2 10.9 4.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Laminin_II PF06009.7 gi|55379487|ref|YP_137337.1| - 1.8 8.3 11.7 0.61 9.8 0.9 2.8 1 1 2 3 3 3 0 Laminin Domain II Mod_r PF07200.8 gi|55379487|ref|YP_137337.1| - 2 8.3 12.4 0.22 11.4 4.1 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein AAA_23 PF13476.1 gi|55379487|ref|YP_137337.1| - 2.3 8.4 9.5 4.3 7.6 6.6 1.4 1 1 0 1 1 1 0 AAA domain DUF607 PF04678.8 gi|55379487|ref|YP_137337.1| - 2.3 8.0 9.2 17 5.2 6.4 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF607 AATF-Che1 PF13339.1 gi|55379487|ref|YP_137337.1| - 2.3 8.3 10.1 1.6 8.8 1.3 2.7 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor UPF0184 PF03670.8 gi|55379487|ref|YP_137337.1| - 2.4 8.3 8.7 10 6.4 4.0 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) BLOC1_2 PF10046.4 gi|55379487|ref|YP_137337.1| - 3 8.0 15.1 39 4.4 7.5 2.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cytochrom_C_2 PF01322.15 gi|55379487|ref|YP_137337.1| - 3.8 8.0 7.6 3 8.4 3.2 2.3 1 1 1 2 2 2 0 Cytochrome C' LTXXQ PF07813.7 gi|55379487|ref|YP_137337.1| - 4.8 7.6 10.7 1.2 9.6 0.2 2.9 1 1 2 3 3 3 0 LTXXQ motif family protein Phasin PF05597.6 gi|55379487|ref|YP_137337.1| - 4.9 6.9 16.6 2.1 8.1 1.5 2.9 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) End3 PF12761.2 gi|55379487|ref|YP_137337.1| - 5.5 6.5 11.5 21 4.6 7.9 2.0 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 HisKA_3 PF07730.8 gi|55379487|ref|YP_137337.1| - 7.3 7.0 7.9 4.9 7.5 1.6 3.1 1 1 3 4 4 3 0 Histidine kinase Fib_alpha PF08702.5 gi|55379487|ref|YP_137337.1| - 7.8 6.6 10.3 16 5.5 1.2 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF16 PF01519.11 gi|55379487|ref|YP_137337.1| - 7.8 6.7 15.7 13 6.0 6.1 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 Cupin_4 PF08007.7 gi|55379487|ref|YP_137337.1| - 8.4 5.5 10.7 4.7 6.3 3.5 2.0 1 1 1 2 2 2 0 Cupin superfamily protein TBPIP PF07106.8 gi|55379487|ref|YP_137337.1| - 8.5 5.8 13.5 1.7 8.2 3.0 2.7 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Transposase_22 PF02994.9 gi|55379487|ref|YP_137337.1| - 9.4 4.6 12.2 11 4.4 4.9 1.9 1 1 1 2 2 2 0 L1 transposable element PHA_synth_III_E PF09712.5 gi|55379488|ref|YP_137338.1| - 9.4e-15 54.7 12.3 6.1e-14 52.1 0.2 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|55379488|ref|YP_137338.1| - 8.7e-06 25.5 1.0 8.7e-06 25.5 0.7 2.5 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) FliD_C PF07195.7 gi|55379488|ref|YP_137338.1| - 0.018 14.3 1.1 0.2 10.9 0.1 2.0 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF2262 PF10020.4 gi|55379488|ref|YP_137338.1| - 0.073 13.2 7.5 0.12 12.6 5.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2262) RuBisCO_large PF00016.15 gi|55379488|ref|YP_137338.1| - 0.076 11.8 0.2 0.25 10.1 0.0 1.8 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain DUF4083 PF13314.1 gi|55379488|ref|YP_137338.1| - 0.098 12.5 0.6 0.19 11.5 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Snapin_Pallidin PF14712.1 gi|55379488|ref|YP_137338.1| - 0.12 12.6 2.2 19 5.6 0.0 3.0 2 2 1 3 3 3 0 Snapin/Pallidin LXG PF04740.7 gi|55379488|ref|YP_137338.1| - 0.32 10.7 5.1 0.33 10.7 1.1 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily ISG65-75 PF11727.3 gi|55379488|ref|YP_137338.1| - 0.42 9.6 4.1 0.34 9.9 0.8 1.9 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF29 PF01724.11 gi|55379488|ref|YP_137338.1| - 0.51 10.1 8.4 4.8 7.0 1.0 2.7 2 1 0 2 2 2 0 Domain of unknown function DUF29 DUF4446 PF14584.1 gi|55379488|ref|YP_137338.1| - 0.59 9.9 3.0 2.8 7.7 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) BMFP PF04380.8 gi|55379488|ref|YP_137338.1| - 0.75 9.9 10.4 3.2 7.9 2.1 2.6 3 0 0 3 3 2 0 Membrane fusogenic activity DUF2800 PF10926.3 gi|55379488|ref|YP_137338.1| - 1.1 8.3 6.3 1.1 8.3 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2800) V_ATPase_I PF01496.14 gi|55379488|ref|YP_137338.1| - 1.2 6.9 3.8 0.29 8.9 0.5 1.5 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family P4Ha_N PF08336.6 gi|55379488|ref|YP_137338.1| - 1.3 8.7 6.9 4.2 7.1 0.2 2.5 2 1 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region NYD-SP28 PF14772.1 gi|55379488|ref|YP_137338.1| - 1.5 8.9 11.6 0.048 13.7 1.7 2.5 2 1 0 2 2 2 0 Sperm tail GP41 PF00517.12 gi|55379488|ref|YP_137338.1| - 1.7 8.1 4.4 11 5.4 0.1 2.2 2 0 0 2 2 2 0 Retroviral envelope protein Sipho_Gp157 PF05565.6 gi|55379488|ref|YP_137338.1| - 2.3 7.8 9.8 3.5 7.1 0.7 2.4 2 1 0 2 2 2 0 Siphovirus Gp157 BLOC1_2 PF10046.4 gi|55379488|ref|YP_137338.1| - 2.5 8.2 9.1 11 6.2 1.8 2.9 2 2 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FadA PF09403.5 gi|55379488|ref|YP_137338.1| - 3 7.8 7.3 0.28 11.2 0.5 2.2 2 1 0 2 2 2 0 Adhesion protein FadA RebB PF11747.3 gi|55379488|ref|YP_137338.1| - 6.1 6.8 7.8 1.3 8.9 1.2 2.2 2 0 0 2 2 2 0 Killing trait Abhydrolase_1 PF00561.15 gi|55379489|ref|YP_137339.1| - 1.7e-15 57.1 0.0 3.9e-15 56.0 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold HHH_5 PF14520.1 gi|55379489|ref|YP_137339.1| - 2e-10 40.6 0.1 5.1e-10 39.3 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3141 PF11339.3 gi|55379489|ref|YP_137339.1| - 4.6e-10 38.4 0.0 1.4e-07 30.2 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) Abhydrolase_6 PF12697.2 gi|55379489|ref|YP_137339.1| - 7.1e-10 39.1 0.0 2.4e-09 37.4 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|55379489|ref|YP_137339.1| - 6.6e-09 35.4 0.0 1.1e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|55379489|ref|YP_137339.1| - 5.7e-08 32.6 0.0 6.5e-07 29.1 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|55379489|ref|YP_137339.1| - 6.4e-07 28.8 0.1 0.0033 16.7 0.0 3.2 2 1 1 3 3 3 2 Dienelactone hydrolase family PHB_depo_C PF06850.6 gi|55379489|ref|YP_137339.1| - 1.8e-05 24.0 0.0 3.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DNA_pol_lambd_f PF10391.4 gi|55379489|ref|YP_137339.1| - 0.00027 20.4 0.0 0.00078 18.9 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|55379489|ref|YP_137339.1| - 0.00057 19.8 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) FSH1 PF03959.8 gi|55379489|ref|YP_137339.1| - 0.00074 19.0 0.0 0.085 12.2 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Cdd1 PF11731.3 gi|55379489|ref|YP_137339.1| - 0.00078 19.3 0.1 0.0027 17.5 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus TfoX_C PF04994.8 gi|55379489|ref|YP_137339.1| - 0.013 15.4 0.0 0.032 14.1 0.0 1.7 1 0 0 1 1 1 0 TfoX C-terminal domain DUF2048 PF09752.4 gi|55379489|ref|YP_137339.1| - 0.093 11.5 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Lysine_decarbox PF03641.9 gi|55379490|ref|YP_137340.1| - 3.7e-09 36.4 0.4 6.4e-09 35.7 0.2 1.4 1 1 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|55379490|ref|YP_137340.1| - 5e-06 25.5 2.8 6.3e-05 21.9 1.0 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|55379490|ref|YP_137340.1| - 0.016 14.7 1.0 0.025 14.1 0.7 1.3 1 0 0 1 1 1 0 Amino acid kinase family Nuc_deoxyrib_tr PF05014.10 gi|55379490|ref|YP_137340.1| - 0.016 15.0 0.0 0.031 14.1 0.0 1.5 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase DUF3265 PF11665.3 gi|55379490|ref|YP_137340.1| - 0.3 10.9 2.0 2.8 7.8 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) Cpn60_TCP1 PF00118.19 gi|55379492|ref|YP_137342.1| - 4.8e-165 549.8 7.5 5.5e-165 549.6 5.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_22 PF13401.1 gi|55379493|ref|YP_137343.1| - 3.4e-09 36.9 0.0 8.5e-09 35.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|55379493|ref|YP_137343.1| - 0.0047 17.1 0.0 0.085 13.0 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|55379493|ref|YP_137343.1| - 0.0062 16.2 0.0 0.013 15.1 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|55379493|ref|YP_137343.1| - 0.04 12.7 0.0 0.059 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.9 gi|55379493|ref|YP_137343.1| - 0.081 11.8 0.1 8.9 5.1 0.0 2.8 2 1 0 3 3 3 0 KAP family P-loop domain AAA_16 PF13191.1 gi|55379493|ref|YP_137343.1| - 0.11 12.5 1.1 0.28 11.1 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain zf-Mss51 PF13824.1 gi|55379495|ref|YP_137345.1| - 0.19 11.5 1.6 0.66 9.8 0.0 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Syndecan PF01034.15 gi|55379496|ref|YP_137346.1| - 0.12 11.9 3.7 2.6 7.7 0.2 2.7 2 0 0 2 2 2 0 Syndecan domain WTF PF03303.8 gi|55379496|ref|YP_137346.1| - 0.17 11.3 1.3 0.29 10.4 0.9 1.5 1 0 0 1 1 1 0 WTF protein NAD_binding_10 PF13460.1 gi|55379497|ref|YP_137347.1| - 7.5e-26 91.2 0.2 1.1e-25 90.7 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|55379497|ref|YP_137347.1| - 7.5e-16 58.0 0.0 1.2e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|55379497|ref|YP_137347.1| - 1.2e-11 44.5 0.0 3e-10 39.9 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55379497|ref|YP_137347.1| - 5.4e-06 25.3 0.0 8.4e-06 24.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|55379497|ref|YP_137347.1| - 6.1e-05 22.0 0.0 0.00012 21.0 0.0 1.5 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|55379497|ref|YP_137347.1| - 0.00027 19.9 0.0 0.023 13.5 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain DUF4147 PF13660.1 gi|55379497|ref|YP_137347.1| - 0.056 12.5 0.0 0.097 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Epimerase PF01370.16 gi|55379498|ref|YP_137348.1| - 9.8e-67 224.8 0.1 1.2e-66 224.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55379498|ref|YP_137348.1| - 3.9e-30 104.5 0.0 5e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|55379498|ref|YP_137348.1| - 1.5e-20 73.2 0.1 2e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|55379498|ref|YP_137348.1| - 1.7e-18 66.5 0.0 9.2e-18 64.1 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|55379498|ref|YP_137348.1| - 7.4e-14 52.1 0.2 1.1e-12 48.4 0.1 2.1 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|55379498|ref|YP_137348.1| - 4.2e-13 49.5 0.0 1.4e-12 47.8 0.0 1.8 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|55379498|ref|YP_137348.1| - 1.9e-12 46.6 0.0 3.2e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein KR PF08659.5 gi|55379498|ref|YP_137348.1| - 3.4e-09 36.6 0.0 1.8e-08 34.2 0.0 2.0 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|55379498|ref|YP_137348.1| - 1.9e-08 33.8 0.0 2.3e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.13 gi|55379498|ref|YP_137348.1| - 0.0042 16.7 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|55379498|ref|YP_137348.1| - 0.0076 15.6 0.2 0.023 14.0 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase_Csub PF13950.1 gi|55379498|ref|YP_137348.1| - 0.031 14.2 0.2 0.063 13.2 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit F420_oxidored PF03807.12 gi|55379498|ref|YP_137348.1| - 0.041 14.3 0.0 0.096 13.1 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|55379498|ref|YP_137348.1| - 0.1 12.9 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|55379498|ref|YP_137348.1| - 0.14 12.1 1.6 1 9.3 0.2 2.8 2 2 0 2 2 2 0 TrkA-N domain CSD PF00313.17 gi|55379499|ref|YP_137349.1| - 1e-19 70.0 0.4 1.2e-19 69.8 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|55379499|ref|YP_137349.1| - 0.0055 16.4 0.2 0.008 15.8 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|55379499|ref|YP_137349.1| - 0.04 13.4 2.5 0.06 12.8 1.7 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|55379499|ref|YP_137349.1| - 0.092 12.6 0.1 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF Helicase_C_2 PF13307.1 gi|55379500|ref|YP_137350.1| - 1.6e-22 80.2 0.0 3.9e-22 78.9 0.0 1.6 2 0 0 2 2 2 1 Helicase C-terminal domain DXP_redisom_C PF08436.7 gi|55379500|ref|YP_137350.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Met_10 PF02475.11 gi|55379501|ref|YP_137351.1| - 7.7e-49 166.0 0.0 6.1e-27 94.5 0.0 2.2 2 0 0 2 2 2 2 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|55379501|ref|YP_137351.1| - 8.6e-12 45.6 0.0 1.7e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379501|ref|YP_137351.1| - 5e-10 39.4 0.7 4.8e-09 36.2 0.1 2.7 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|55379501|ref|YP_137351.1| - 3.6e-06 26.6 0.0 6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|55379501|ref|YP_137351.1| - 0.00011 21.6 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|55379501|ref|YP_137351.1| - 0.00018 21.1 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379501|ref|YP_137351.1| - 0.00074 19.2 0.0 0.0027 17.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55379501|ref|YP_137351.1| - 0.001 18.5 0.0 0.0039 16.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|55379501|ref|YP_137351.1| - 0.0014 19.4 0.2 0.0063 17.3 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|55379501|ref|YP_137351.1| - 0.0059 15.6 0.0 0.018 14.0 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|55379501|ref|YP_137351.1| - 0.021 13.4 0.0 0.032 12.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase ADH_zinc_N PF00107.21 gi|55379501|ref|YP_137351.1| - 0.086 12.3 0.0 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DNA_methylase PF00145.12 gi|55379501|ref|YP_137351.1| - 0.097 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase NMD3 PF04981.8 gi|55379502|ref|YP_137352.1| - 9.2e-74 247.5 0.1 1.1e-73 247.2 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|55379502|ref|YP_137352.1| - 0.0025 17.5 4.6 0.19 11.5 2.2 3.0 2 1 1 3 3 3 1 Double zinc ribbon FYVE PF01363.16 gi|55379502|ref|YP_137352.1| - 0.0027 17.5 1.4 0.21 11.5 0.6 2.3 2 0 0 2 2 2 1 FYVE zinc finger GFA PF04828.9 gi|55379502|ref|YP_137352.1| - 0.0039 17.1 1.0 7.8 6.5 0.0 3.4 3 0 0 3 3 3 2 Glutathione-dependent formaldehyde-activating enzyme Rpr2 PF04032.11 gi|55379502|ref|YP_137352.1| - 0.0098 15.7 0.2 0.52 10.2 0.0 2.7 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_2 PF13240.1 gi|55379502|ref|YP_137352.1| - 0.022 14.2 6.2 0.45 10.0 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55379502|ref|YP_137352.1| - 0.081 12.1 8.9 3 7.1 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|55379502|ref|YP_137352.1| - 0.85 9.3 5.6 7.2 6.4 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.1 gi|55379502|ref|YP_137352.1| - 1.1 8.8 4.2 70 3.1 0.2 3.6 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.1 gi|55379502|ref|YP_137352.1| - 5.4 7.4 6.1 1e+02 3.3 3.0 3.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|55379502|ref|YP_137352.1| - 8.2 6.0 12.2 2.5 7.6 0.3 2.9 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain Epimerase PF01370.16 gi|55379503|ref|YP_137353.1| - 2.3e-28 99.2 0.1 8.1e-27 94.1 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55379503|ref|YP_137353.1| - 4e-14 52.1 0.2 2e-13 49.8 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55379503|ref|YP_137353.1| - 3.3e-11 43.5 0.3 4.3e-11 43.1 0.2 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|55379503|ref|YP_137353.1| - 7e-08 31.7 0.0 1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|55379503|ref|YP_137353.1| - 9e-07 27.8 0.0 1.3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|55379503|ref|YP_137353.1| - 1.7e-06 28.0 1.3 3.9e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|55379503|ref|YP_137353.1| - 7.9e-05 21.6 0.0 0.00022 20.2 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|55379503|ref|YP_137353.1| - 0.0051 16.5 0.1 0.015 14.9 0.1 1.9 1 1 0 1 1 1 1 KR domain DHQ_synthase PF01761.15 gi|55379503|ref|YP_137353.1| - 0.049 12.5 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase Abhydrolase_6 PF12697.2 gi|55379503|ref|YP_137353.1| - 1.6 8.5 11.6 3.7 7.3 8.0 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_M48 PF01435.13 gi|55379504|ref|YP_137354.1| - 4.7e-41 140.7 0.0 7.3e-41 140.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|55379504|ref|YP_137354.1| - 1.3e-07 30.9 0.9 1.8e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Tic20 PF09685.5 gi|55379504|ref|YP_137354.1| - 0.062 13.2 8.1 1.7 8.6 0.5 2.3 2 0 0 2 2 2 0 Tic20-like protein Peptidase_MA_2 PF13485.1 gi|55379504|ref|YP_137354.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily NfeD PF01957.13 gi|55379504|ref|YP_137354.1| - 0.17 11.9 8.1 0.26 11.4 0.4 2.3 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2207 PF09972.4 gi|55379504|ref|YP_137354.1| - 0.48 8.9 6.0 3 6.3 1.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Pox_E6 PF04656.7 gi|55379505|ref|YP_137355.1| - 0.035 12.3 0.0 0.046 11.9 0.0 1.1 1 0 0 1 1 1 0 Pox virus E6 protein Rad51 PF08423.6 gi|55379507|ref|YP_137357.1| - 2.3e-81 272.4 0.1 3e-48 163.9 0.0 2.0 1 1 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|55379507|ref|YP_137357.1| - 1.2e-10 41.3 3.0 1.8e-10 40.8 0.1 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|55379507|ref|YP_137357.1| - 2e-09 37.1 0.4 3.1e-09 36.4 0.3 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|55379507|ref|YP_137357.1| - 8.2e-08 31.6 0.1 0.0033 16.5 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|55379507|ref|YP_137357.1| - 9.1e-06 25.0 1.3 0.00094 18.7 0.2 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|55379507|ref|YP_137357.1| - 0.00051 19.8 0.1 0.0015 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|55379507|ref|YP_137357.1| - 0.0011 18.0 0.3 0.002 17.2 0.2 1.7 1 1 0 1 1 1 1 KaiC Cdd1 PF11731.3 gi|55379507|ref|YP_137357.1| - 0.002 18.0 0.0 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.3 gi|55379507|ref|YP_137357.1| - 0.0044 16.9 0.0 0.017 15.1 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif AAA_22 PF13401.1 gi|55379507|ref|YP_137357.1| - 0.0066 16.5 0.1 0.024 14.7 0.1 2.0 2 1 0 2 2 1 1 AAA domain HHH_8 PF14716.1 gi|55379507|ref|YP_137357.1| - 0.037 14.2 0.0 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|55379507|ref|YP_137357.1| - 0.074 12.6 0.0 0.23 11.0 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_3 PF12836.2 gi|55379507|ref|YP_137357.1| - 0.11 12.4 0.0 5.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Aldo_ket_red PF00248.16 gi|55379508|ref|YP_137358.1| - 1.1e-47 162.2 0.0 1.2e-47 162.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|55379508|ref|YP_137358.1| - 5.6 7.0 7.2 3.2 7.8 0.7 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Abi PF02517.11 gi|55379509|ref|YP_137359.1| - 2.2e-12 46.9 5.5 2.2e-12 46.9 3.8 2.4 2 0 0 2 2 2 1 CAAX protease self-immunity Hexapep PF00132.19 gi|55379510|ref|YP_137360.1| - 5.6e-08 31.9 1.5 0.0028 17.1 0.0 3.3 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55379510|ref|YP_137360.1| - 0.00034 20.0 0.3 0.035 13.6 0.0 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase KaiC PF06745.8 gi|55379512|ref|YP_137362.1| - 1.6e-42 145.1 0.1 1.8e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|55379512|ref|YP_137362.1| - 3.5e-10 39.6 0.0 6e-10 38.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|55379512|ref|YP_137362.1| - 7.2e-08 31.1 0.1 2.7e-07 29.2 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|55379512|ref|YP_137362.1| - 3.2e-06 26.8 0.0 6.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|55379512|ref|YP_137362.1| - 0.00012 22.0 0.0 0.00026 20.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55379512|ref|YP_137362.1| - 0.00013 22.0 0.3 0.00042 20.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|55379512|ref|YP_137362.1| - 0.00018 20.9 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|55379512|ref|YP_137362.1| - 0.00032 20.4 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|55379512|ref|YP_137362.1| - 0.00034 20.5 0.2 0.00072 19.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|55379512|ref|YP_137362.1| - 0.001 19.0 0.0 0.0017 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55379512|ref|YP_137362.1| - 0.001 19.8 0.4 0.002 18.9 0.3 1.8 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|55379512|ref|YP_137362.1| - 0.0018 17.8 0.1 0.0033 16.9 0.1 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein RecA PF00154.16 gi|55379512|ref|YP_137362.1| - 0.0021 17.1 0.0 0.004 16.2 0.0 1.5 2 0 0 2 2 1 1 recA bacterial DNA recombination protein AAA PF00004.24 gi|55379512|ref|YP_137362.1| - 0.0034 17.5 0.6 0.031 14.4 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|55379512|ref|YP_137362.1| - 0.0035 16.8 0.1 0.0065 15.9 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|55379512|ref|YP_137362.1| - 0.006 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|55379512|ref|YP_137362.1| - 0.0085 16.5 0.6 0.064 13.7 0.4 2.2 1 1 0 1 1 1 1 Miro-like protein AAA_16 PF13191.1 gi|55379512|ref|YP_137362.1| - 0.0089 16.0 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.10 gi|55379512|ref|YP_137362.1| - 0.015 14.2 0.0 0.028 13.2 0.0 1.5 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NACHT PF05729.7 gi|55379512|ref|YP_137362.1| - 0.015 14.9 0.1 0.051 13.2 0.0 1.9 2 1 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|55379512|ref|YP_137362.1| - 0.016 15.5 0.2 0.037 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|55379512|ref|YP_137362.1| - 0.016 14.6 0.1 0.073 12.5 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|55379512|ref|YP_137362.1| - 0.02 13.8 0.0 0.035 13.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|55379512|ref|YP_137362.1| - 0.021 15.0 0.1 0.051 13.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase Zot PF05707.7 gi|55379512|ref|YP_137362.1| - 0.028 13.8 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|55379512|ref|YP_137362.1| - 0.031 13.2 0.0 0.033 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|55379512|ref|YP_137362.1| - 0.033 13.9 0.2 0.049 13.3 0.1 1.4 1 1 0 1 1 1 0 NTPase Viral_helicase1 PF01443.13 gi|55379512|ref|YP_137362.1| - 0.038 13.5 0.0 0.068 12.6 0.0 1.5 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase AAA_35 PF14516.1 gi|55379512|ref|YP_137362.1| - 0.039 12.5 0.0 0.56 8.7 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|55379512|ref|YP_137362.1| - 0.04 13.4 0.0 0.059 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|55379512|ref|YP_137362.1| - 0.044 12.9 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DEAD PF00270.24 gi|55379512|ref|YP_137362.1| - 0.053 12.9 0.1 0.087 12.3 0.1 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase CobU PF02283.11 gi|55379512|ref|YP_137362.1| - 0.061 12.7 0.0 6.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Zeta_toxin PF06414.7 gi|55379512|ref|YP_137362.1| - 0.066 12.3 0.0 0.12 11.4 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin PAXNEB PF05625.6 gi|55379512|ref|YP_137362.1| - 0.077 11.8 0.2 2.7 6.7 0.0 2.0 1 1 0 2 2 2 0 PAXNEB protein MEDS PF14417.1 gi|55379512|ref|YP_137362.1| - 0.079 12.0 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain ArgK PF03308.11 gi|55379512|ref|YP_137362.1| - 0.08 11.6 0.1 0.12 11.1 0.1 1.4 1 1 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|55379512|ref|YP_137362.1| - 0.084 12.4 0.3 0.17 11.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_11 PF13086.1 gi|55379512|ref|YP_137362.1| - 0.093 12.2 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|55379512|ref|YP_137362.1| - 0.11 11.8 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase DAP3 PF10236.4 gi|55379512|ref|YP_137362.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ABC_tran PF00005.22 gi|55379512|ref|YP_137362.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.5 1 1 0 1 1 1 0 ABC transporter PHP PF02811.14 gi|55379515|ref|YP_137365.1| - 2.8e-13 50.0 0.0 8.5e-13 48.4 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|55379515|ref|YP_137365.1| - 0.01 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 PHP-associated Cupin_2 PF07883.6 gi|55379517|ref|YP_137367.1| - 9.1e-16 57.1 1.0 1.3e-15 56.6 0.7 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|55379517|ref|YP_137367.1| - 2e-06 27.5 0.1 3e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|55379517|ref|YP_137367.1| - 0.014 14.9 0.1 0.015 14.9 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain RPA_interact_C PF14768.1 gi|55379517|ref|YP_137367.1| - 0.082 13.3 0.3 0.15 12.5 0.2 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2072 PF09845.4 gi|55379517|ref|YP_137367.1| - 0.094 12.6 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) MannoseP_isomer PF01050.13 gi|55379517|ref|YP_137367.1| - 0.099 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|55379517|ref|YP_137367.1| - 0.14 11.5 0.3 0.24 10.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Zn-ribbon_8 PF09723.5 gi|55379517|ref|YP_137367.1| - 0.22 11.5 2.0 0.79 9.7 1.5 1.8 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|55379517|ref|YP_137367.1| - 4.3 6.9 6.6 13 5.3 0.5 3.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain GATase PF00117.23 gi|55379518|ref|YP_137368.1| - 4.9e-22 78.3 0.0 6.8e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55379518|ref|YP_137368.1| - 1.8e-06 27.5 0.1 2.4e-05 23.9 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|55379518|ref|YP_137368.1| - 0.00011 21.0 0.0 0.00018 20.3 0.0 1.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase Aldo_ket_red PF00248.16 gi|55379520|ref|YP_137370.1| - 4.5e-62 209.4 0.0 5.4e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|55379521|ref|YP_137371.1| - 3.2e-21 76.0 0.0 5.4e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55379521|ref|YP_137371.1| - 6.4e-06 25.9 0.0 1.3e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|55379521|ref|YP_137371.1| - 0.021 15.2 0.0 0.038 14.4 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF3166 PF11365.3 gi|55379522|ref|YP_137372.1| - 0.16 12.4 1.8 1.4 9.4 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3166) GTPase_Cys_C PF12631.2 gi|55379522|ref|YP_137372.1| - 0.66 10.4 6.8 0.37 11.2 0.4 3.0 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE TPR_11 PF13414.1 gi|55379522|ref|YP_137372.1| - 0.87 9.2 12.3 8.5 6.1 0.1 3.8 3 1 0 3 3 3 0 TPR repeat DZR PF12773.2 gi|55379523|ref|YP_137373.1| - 3.9e-05 23.3 3.3 5.2e-05 22.9 2.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55379523|ref|YP_137373.1| - 4.8e-05 22.4 0.7 7.4e-05 21.8 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|55379523|ref|YP_137373.1| - 7.6e-05 22.0 2.5 0.00011 21.5 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|55379523|ref|YP_137373.1| - 0.0012 17.8 0.9 0.0017 17.3 0.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others stn_TNFRSF12A PF12191.3 gi|55379523|ref|YP_137373.1| - 0.017 15.1 0.0 0.019 14.9 0.0 1.1 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain PolC_DP2 PF03833.8 gi|55379523|ref|YP_137373.1| - 0.026 12.2 0.4 0.027 12.1 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 SoxD PF04267.7 gi|55379523|ref|YP_137373.1| - 0.029 14.1 0.2 0.045 13.5 0.1 1.4 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family OrfB_Zn_ribbon PF07282.6 gi|55379523|ref|YP_137373.1| - 0.03 13.9 1.6 0.045 13.4 1.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RELT PF12606.3 gi|55379523|ref|YP_137373.1| - 0.049 12.7 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DNA_RNApol_7kD PF03604.8 gi|55379523|ref|YP_137373.1| - 0.1 12.0 0.9 0.65 9.5 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|55379523|ref|YP_137373.1| - 0.47 10.1 5.6 2.3 7.9 0.1 2.9 3 0 0 3 3 3 0 Nudix N-terminal DUF91 PF01939.11 gi|161723232|ref|YP_137375.2| - 1.3e-68 230.5 0.0 1.5e-68 230.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 HTH_10 PF04967.7 gi|55379527|ref|YP_137377.1| - 9.9e-22 76.2 0.1 1.5e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|55379527|ref|YP_137377.1| - 0.0011 18.7 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55379527|ref|YP_137377.1| - 0.0047 16.5 0.0 0.0099 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|55379527|ref|YP_137377.1| - 0.011 15.0 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55379527|ref|YP_137377.1| - 0.02 14.5 0.0 0.058 13.0 0.0 1.8 2 0 0 2 2 2 0 MarR family GerE PF00196.14 gi|55379527|ref|YP_137377.1| - 0.033 13.5 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|55379527|ref|YP_137377.1| - 0.039 13.6 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r3 PF04539.11 gi|55379527|ref|YP_137377.1| - 0.039 13.8 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_r4 PF04545.11 gi|55379527|ref|YP_137377.1| - 0.04 13.2 0.0 0.1 11.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|55379527|ref|YP_137377.1| - 0.094 12.1 0.0 0.51 9.8 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|55379527|ref|YP_137377.1| - 0.1 12.9 0.1 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain MutS_V PF00488.16 gi|55379528|ref|YP_137378.1| - 1.5e-87 292.9 0.0 2.2e-87 292.3 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|55379528|ref|YP_137378.1| - 2.1e-39 135.4 6.7 2.1e-39 135.4 3.4 1.9 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|55379528|ref|YP_137378.1| - 1.1e-37 128.4 0.0 3.5e-37 126.8 0.0 1.8 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|55379528|ref|YP_137378.1| - 1.5e-30 105.2 0.4 3e-30 104.2 0.3 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|55379528|ref|YP_137378.1| - 6.3e-12 45.7 0.0 2.4e-11 43.8 0.0 2.0 1 0 0 1 1 1 1 MutS domain II Cpn60_TCP1 PF00118.19 gi|55379530|ref|YP_137380.1| - 1.5e-149 498.7 7.4 1.7e-149 498.5 5.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OCD_Mu_crystall PF02423.10 gi|55379532|ref|YP_137382.1| - 4.8e-87 291.6 3.5 5.4e-87 291.4 2.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|55379532|ref|YP_137382.1| - 1.2e-05 25.3 0.0 2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|55379532|ref|YP_137382.1| - 0.1 13.0 0.2 0.26 11.8 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold zf-HYPF PF07503.7 gi|55379534|ref|YP_137384.1| - 0.00011 21.4 2.6 0.013 14.8 0.4 2.2 2 0 0 2 2 2 2 HypF finger zf-ribbon_3 PF13248.1 gi|55379534|ref|YP_137384.1| - 0.00019 20.5 1.2 0.32 10.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2082 PF09855.4 gi|55379534|ref|YP_137384.1| - 0.0042 16.8 0.1 0.0056 16.5 0.1 1.2 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.4 gi|55379534|ref|YP_137384.1| - 0.0069 16.0 1.8 0.18 11.5 0.2 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|55379534|ref|YP_137384.1| - 0.0091 16.2 2.5 0.055 13.7 1.7 1.9 1 1 0 1 1 1 1 Restriction alleviation protein Lar Arc_trans_TRASH PF08394.5 gi|55379534|ref|YP_137384.1| - 0.019 15.0 0.2 0.69 10.1 0.0 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain Sgf11 PF08209.6 gi|55379534|ref|YP_137384.1| - 0.023 13.9 0.5 3.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prok-RING_1 PF14446.1 gi|55379534|ref|YP_137384.1| - 0.029 14.0 1.5 4.5 7.0 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 CpXC PF14353.1 gi|55379534|ref|YP_137384.1| - 0.036 14.0 0.6 1.6 8.6 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.1 gi|55379534|ref|YP_137384.1| - 0.038 13.6 0.2 4.3 7.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|55379534|ref|YP_137384.1| - 0.054 13.0 0.2 5.4 6.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|55379534|ref|YP_137384.1| - 0.067 12.7 0.3 8.6 5.9 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|55379534|ref|YP_137384.1| - 0.083 12.7 2.2 0.72 9.7 1.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|55379534|ref|YP_137384.1| - 0.11 12.0 1.5 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|55379534|ref|YP_137384.1| - 0.17 11.3 3.0 1.7 8.2 2.0 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|55379534|ref|YP_137384.1| - 0.19 11.2 0.8 0.44 10.0 0.1 1.8 2 0 0 2 2 2 0 InsA N-terminal domain Ogr_Delta PF04606.7 gi|55379534|ref|YP_137384.1| - 1.3 8.7 5.0 2.4 7.8 0.6 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|55379534|ref|YP_137384.1| - 3.8 6.9 5.0 58 3.1 3.5 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Fer4_10 PF13237.1 gi|55379535|ref|YP_137385.1| - 0.04 13.7 2.8 0.069 12.9 1.9 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF678 PF05077.7 gi|55379535|ref|YP_137385.1| - 0.054 13.4 0.9 0.07 13.1 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF678) DUF3624 PF12292.3 gi|55379535|ref|YP_137385.1| - 0.18 12.2 2.2 0.34 11.3 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) Lar_restr_allev PF14354.1 gi|55379535|ref|YP_137385.1| - 1.4 9.2 6.8 5 7.5 1.5 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Fer2_4 PF13510.1 gi|55379535|ref|YP_137385.1| - 1.6 8.6 4.0 5.8 6.7 2.7 2.0 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|55379535|ref|YP_137385.1| - 2.3 8.2 6.9 3.2 7.7 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain zf-CSL PF05207.8 gi|55379535|ref|YP_137385.1| - 2.9 7.4 6.1 19 4.8 1.7 2.2 2 1 0 2 2 2 0 CSL zinc finger zf-ribbon_3 PF13248.1 gi|55379535|ref|YP_137385.1| - 7 5.9 8.9 0.99 8.7 1.9 2.5 2 1 0 2 2 2 0 zinc-ribbon domain HATPase_c PF02518.21 gi|55379536|ref|YP_137386.1| - 1.8e-11 43.7 0.0 3.3e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55379536|ref|YP_137386.1| - 3.5e-08 33.4 1.3 1.1e-07 31.8 0.4 2.3 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|55379536|ref|YP_137386.1| - 0.0026 17.7 0.8 0.026 14.5 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55379536|ref|YP_137386.1| - 0.15 11.7 0.0 0.46 10.1 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tRNA-synt_1 PF00133.17 gi|55379537|ref|YP_137387.1| - 2.8e-75 253.5 6.1 7.6e-27 93.5 0.1 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|55379537|ref|YP_137387.1| - 3.9e-59 199.0 0.0 6.9e-59 198.2 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|55379537|ref|YP_137387.1| - 2.5e-36 125.1 0.0 2e-25 89.2 0.0 4.2 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|55379537|ref|YP_137387.1| - 1.6e-15 57.1 0.1 3e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|55379537|ref|YP_137387.1| - 0.00049 19.3 0.0 0.052 12.6 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|55379537|ref|YP_137387.1| - 0.0082 14.8 0.0 0.98 8.0 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|55379537|ref|YP_137387.1| - 0.025 13.3 0.1 4.4 6.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (R) DZR PF12773.2 gi|55379537|ref|YP_137387.1| - 0.028 14.2 4.7 0.67 9.8 0.4 2.8 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|55379537|ref|YP_137387.1| - 0.094 12.4 3.7 1.4 8.6 0.0 3.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|55379537|ref|YP_137387.1| - 0.5 9.6 4.1 8.5 5.7 0.0 3.4 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|55379537|ref|YP_137387.1| - 2.7 7.3 7.9 14 5.0 0.2 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding AhpC-TSA PF00578.16 gi|55379538|ref|YP_137388.1| - 1.4e-28 99.0 0.0 1.6e-28 98.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55379538|ref|YP_137388.1| - 2.8e-16 59.3 0.0 3.1e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|55379538|ref|YP_137388.1| - 0.00073 19.4 0.0 0.00092 19.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|55379538|ref|YP_137388.1| - 0.0028 17.1 0.0 0.0034 16.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|55379538|ref|YP_137388.1| - 0.037 14.1 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like HSP20 PF00011.16 gi|55379539|ref|YP_137389.1| - 1.1e-18 66.9 0.1 1.3e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PDT PF00800.13 gi|55379540|ref|YP_137390.1| - 1.5e-50 171.2 0.5 1.9e-50 170.9 0.3 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|55379540|ref|YP_137390.1| - 5.5e-08 32.1 0.0 2.8e-07 29.8 0.0 2.3 2 0 0 2 2 2 1 ACT domain Aldo_ket_red PF00248.16 gi|55379541|ref|YP_137391.1| - 8.3e-70 234.8 0.0 1e-69 234.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Pyr_redox_2 PF07992.9 gi|55379543|ref|YP_137393.1| - 1.6e-39 135.9 0.0 3.1e-39 134.9 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|55379543|ref|YP_137393.1| - 5.8e-36 122.8 1.4 1.2e-35 121.8 0.2 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|55379543|ref|YP_137393.1| - 3.8e-22 78.4 5.9 1e-19 70.6 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55379543|ref|YP_137393.1| - 2.9e-10 39.5 2.9 7.4e-08 31.6 0.4 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|55379543|ref|YP_137393.1| - 1.6e-06 27.4 0.7 1.6e-06 27.4 0.5 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55379543|ref|YP_137393.1| - 8.2e-06 24.9 8.5 0.0002 20.3 0.3 3.6 4 0 0 4 4 4 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|55379543|ref|YP_137393.1| - 2.6e-05 24.3 2.0 0.0011 19.1 0.4 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|55379543|ref|YP_137393.1| - 6.7e-05 22.0 9.7 0.1 11.6 0.7 3.3 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|55379543|ref|YP_137393.1| - 6.9e-05 21.9 21.2 0.05 12.5 1.1 4.6 3 2 2 5 5 5 3 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|55379543|ref|YP_137393.1| - 9.3e-05 22.1 0.7 0.0008 19.1 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|55379543|ref|YP_137393.1| - 0.00011 20.8 5.2 0.036 12.5 0.1 3.5 4 0 0 4 4 4 2 HI0933-like protein UDPG_MGDP_dh_N PF03721.9 gi|55379543|ref|YP_137393.1| - 0.00024 20.5 1.1 0.00032 20.1 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|55379543|ref|YP_137393.1| - 0.00054 19.9 4.2 0.14 12.2 1.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|55379543|ref|YP_137393.1| - 0.0033 17.6 0.2 0.16 12.2 0.0 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|55379543|ref|YP_137393.1| - 0.0036 16.8 1.0 0.0071 15.9 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|55379543|ref|YP_137393.1| - 0.0036 17.6 0.2 0.049 13.9 0.0 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain Thi4 PF01946.12 gi|55379543|ref|YP_137393.1| - 0.041 12.9 1.3 6.9 5.6 0.1 2.5 2 0 0 2 2 2 0 Thi4 family Prok-JAB PF14464.1 gi|55379543|ref|YP_137393.1| - 0.067 12.7 0.1 0.9 9.1 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain MatC_N PF07158.6 gi|55379544|ref|YP_137394.1| - 6 6.6 11.1 1.5e+02 2.1 7.4 2.5 1 1 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus Yip1 PF04893.12 gi|55379544|ref|YP_137394.1| - 9.4 5.7 15.4 16 4.9 10.7 1.3 1 1 0 1 1 1 0 Yip1 domain 2-oxoacid_dh PF00198.18 gi|55379545|ref|YP_137395.1| - 2.5e-82 275.6 0.0 3.5e-82 275.1 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|55379545|ref|YP_137395.1| - 5.1e-24 83.7 0.9 1.2e-23 82.4 0.6 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|55379545|ref|YP_137395.1| - 5.5e-23 80.3 3.8 4.2e-18 64.6 0.9 2.8 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|55379545|ref|YP_137395.1| - 1.5e-09 37.3 1.8 0.00014 21.4 0.4 3.1 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|55379545|ref|YP_137395.1| - 3.9e-06 27.1 1.3 0.0001 22.6 0.1 2.8 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|55379545|ref|YP_137395.1| - 0.00011 21.4 3.4 0.013 14.6 0.6 3.2 2 1 1 4 4 4 2 HlyD family secretion protein GCV_H PF01597.14 gi|55379545|ref|YP_137395.1| - 0.00021 20.9 0.3 0.00049 19.7 0.2 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein CAT PF00302.13 gi|55379545|ref|YP_137395.1| - 0.011 15.4 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Chloramphenicol acetyltransferase Angiomotin_C PF12240.3 gi|55379545|ref|YP_137395.1| - 0.023 14.1 0.5 0.053 13.0 0.4 1.5 1 0 0 1 1 1 0 Angiomotin C terminal RnfC_N PF13375.1 gi|55379545|ref|YP_137395.1| - 0.029 14.0 0.3 0.075 12.7 0.2 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain S100PBPR PF15427.1 gi|55379545|ref|YP_137395.1| - 1.4 7.9 7.5 0.23 10.4 2.2 1.7 1 1 0 1 1 1 0 S100P-binding protein Transket_pyr PF02779.19 gi|55379546|ref|YP_137396.1| - 2.4e-50 170.4 0.0 3.1e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|55379546|ref|YP_137396.1| - 4.4e-39 133.2 0.1 8.3e-39 132.3 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|55379547|ref|YP_137397.1| - 7.8e-87 290.7 0.0 9.3e-87 290.5 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|55379547|ref|YP_137397.1| - 1.4e-06 27.4 0.0 2.2e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|55379547|ref|YP_137397.1| - 2.3e-05 23.3 0.1 5.2e-05 22.2 0.0 1.7 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.1 gi|55379547|ref|YP_137397.1| - 0.066 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|55379548|ref|YP_137398.1| - 2.8e-11 43.8 0.1 8.6e-11 42.2 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|55379548|ref|YP_137398.1| - 0.08 12.8 0.1 3.7 7.4 0.0 2.8 2 1 1 3 3 3 0 B12 binding domain Chlorophyllase2 PF12740.2 gi|55379548|ref|YP_137398.1| - 0.12 11.2 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Pox_E8 PF03394.8 gi|55379549|ref|YP_137399.1| - 0.15 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Poxvirus E8 protein DEAD PF00270.24 gi|55379550|ref|YP_137400.1| - 7.6e-28 97.1 0.0 1.9e-27 95.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|55379550|ref|YP_137400.1| - 6.4e-16 58.4 0.0 9.2e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|55379550|ref|YP_137400.1| - 9.6e-09 34.9 0.0 3.3e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|55379550|ref|YP_137400.1| - 3.2e-07 30.3 0.0 5.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|55379550|ref|YP_137400.1| - 0.002 18.2 1.6 0.01 15.9 1.1 2.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|55379550|ref|YP_137400.1| - 0.015 14.7 0.0 0.17 11.2 0.0 2.3 2 1 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|55379550|ref|YP_137400.1| - 0.084 11.7 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein HAD_2 PF13419.1 gi|55379551|ref|YP_137401.1| - 5.5e-21 75.5 0.2 6.6e-21 75.3 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55379551|ref|YP_137401.1| - 1.2e-14 55.2 0.1 1e-12 48.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55379551|ref|YP_137401.1| - 7.4e-11 41.6 0.3 1.8e-10 40.3 0.2 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|55379551|ref|YP_137401.1| - 0.00035 20.7 0.0 0.00039 20.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|55379551|ref|YP_137401.1| - 0.0028 17.2 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|55379551|ref|YP_137401.1| - 0.0054 16.6 0.0 0.043 13.7 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase zf-C4_Topoisom PF01396.14 gi|55379552|ref|YP_137402.1| - 2.4e-07 30.1 12.7 1.1e-06 27.9 0.2 3.4 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|55379552|ref|YP_137402.1| - 4.9e-07 29.1 0.0 6.4e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zinc-ribbons_6 PF07191.7 gi|55379552|ref|YP_137402.1| - 0.0012 18.6 3.3 0.037 13.8 0.3 2.6 2 0 0 2 2 2 1 zinc-ribbons DUF1272 PF06906.6 gi|55379552|ref|YP_137402.1| - 0.025 14.4 4.6 1.6 8.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) PADR1 PF08063.7 gi|55379552|ref|YP_137402.1| - 0.034 13.5 0.7 2.5 7.5 0.3 2.6 2 0 0 2 2 2 0 PADR1 (NUC008) domain HypA PF01155.14 gi|55379552|ref|YP_137402.1| - 0.051 13.2 2.6 0.29 10.8 0.7 2.6 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|55379552|ref|YP_137402.1| - 0.064 12.4 0.0 0.064 12.4 0.0 4.0 3 1 2 5 5 5 0 Transcription factor zinc-finger Auto_anti-p27 PF06677.7 gi|55379552|ref|YP_137402.1| - 1.5 8.6 11.5 26 4.6 0.0 4.4 4 1 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Opy2 PF09463.5 gi|55379552|ref|YP_137402.1| - 2.8 8.0 7.7 4 7.6 0.6 3.2 3 0 0 3 3 3 0 Opy2 protein TF_Zn_Ribbon PF08271.7 gi|55379552|ref|YP_137402.1| - 6.5 6.1 11.5 20 4.6 1.2 3.8 3 0 0 3 3 3 0 TFIIB zinc-binding tRNA_int_endo PF01974.12 gi|55379553|ref|YP_137403.1| - 9.2e-41 137.5 0.0 1.8e-23 82.1 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|55379553|ref|YP_137403.1| - 2.1e-30 104.0 0.6 1.5e-15 56.5 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.20 gi|55379554|ref|YP_137404.1| - 1.5e-43 149.0 0.0 8e-26 90.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) DUF2789 PF10982.3 gi|55379554|ref|YP_137404.1| - 0.14 12.2 0.9 5.9 6.9 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2789) tRNA-synt_2d PF01409.15 gi|55379555|ref|YP_137405.1| - 2.7e-77 259.3 0.0 3.3e-77 259.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|55379555|ref|YP_137405.1| - 9.3e-06 24.6 0.5 0.0097 14.7 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|55379555|ref|YP_137405.1| - 0.022 14.5 0.0 0.95 9.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|55379555|ref|YP_137405.1| - 0.052 13.2 2.1 0.24 11.1 0.2 2.7 3 0 0 3 3 3 0 MarR family Mrr_N PF14338.1 gi|55379555|ref|YP_137405.1| - 0.14 12.2 0.0 3.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Mrr N-terminal domain B5 PF03484.10 gi|55379556|ref|YP_137406.1| - 7.8e-14 51.2 0.2 1.4e-12 47.2 0.2 2.4 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|55379556|ref|YP_137406.1| - 9.9e-12 44.6 0.0 1.7e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|55379556|ref|YP_137406.1| - 0.00027 20.2 0.0 0.00043 19.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) RDD PF06271.7 gi|55379557|ref|YP_137407.1| - 1.7e-14 53.9 1.7 2e-14 53.6 1.2 1.1 1 0 0 1 1 1 1 RDD family DHO_dh PF01180.16 gi|55379558|ref|YP_137408.1| - 2.3e-81 273.0 0.0 2.6e-81 272.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|55379558|ref|YP_137408.1| - 0.0029 16.8 0.4 0.0052 15.9 0.3 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase NQRA_SLBB PF11973.3 gi|55379558|ref|YP_137408.1| - 0.13 12.5 1.0 5.3 7.4 0.2 2.3 2 0 0 2 2 2 0 NQRA C-terminal domain PcrB PF01884.12 gi|55379558|ref|YP_137408.1| - 0.14 11.3 0.5 0.28 10.3 0.1 1.5 1 1 1 2 2 2 0 PcrB family SymE_toxin PF08845.5 gi|55379559|ref|YP_137409.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|55379559|ref|YP_137409.1| - 0.013 15.1 0.2 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|55379560|ref|YP_137410.1| - 1.4e-43 146.8 0.2 1.6e-43 146.5 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 CopD PF05425.8 gi|55379563|ref|YP_137413.1| - 0.17 12.1 6.4 0.86 9.8 0.6 3.0 2 1 1 3 3 3 0 Copper resistance protein D DUF2628 PF10947.3 gi|55379563|ref|YP_137413.1| - 0.5 10.1 2.1 1.6 8.5 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) DUF1034 PF06280.7 gi|55379564|ref|YP_137414.1| - 0.0049 17.2 0.5 0.0096 16.3 0.2 1.5 1 1 0 1 1 1 1 Fn3-like domain (DUF1034) TAT_signal PF10518.4 gi|55379565|ref|YP_137415.1| - 0.53 10.4 3.5 2 8.5 2.5 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4131 PF13567.1 gi|55379566|ref|YP_137416.1| - 0.033 13.5 0.6 0.044 13.1 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2069 PF09842.4 gi|55379566|ref|YP_137416.1| - 0.057 13.3 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) DUF461 PF04314.8 gi|55379567|ref|YP_137417.1| - 0.0038 16.8 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF461) DUF2997 PF11211.3 gi|55379567|ref|YP_137417.1| - 0.073 12.4 0.4 0.073 12.4 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2997) ResB PF05140.9 gi|55379568|ref|YP_137418.1| - 0.41 9.1 2.0 5.2 5.4 0.0 2.4 2 1 0 3 3 3 0 ResB-like family Peptidase_S24 PF00717.18 gi|55379569|ref|YP_137419.1| - 1.6e-07 30.8 0.1 3.5e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like DUF2231 PF09990.4 gi|55379571|ref|YP_137421.1| - 0.064 13.6 0.1 0.076 13.3 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) HTH_AraC PF00165.18 gi|55379571|ref|YP_137421.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF3304 PF11745.3 gi|55379573|ref|YP_137423.1| - 0.011 15.9 0.1 0.031 14.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) EamA PF00892.15 gi|55379574|ref|YP_137424.1| - 0.033 14.2 2.4 0.036 14.1 1.6 1.0 1 0 0 1 1 1 0 EamA-like transporter family Claudin_2 PF13903.1 gi|55379574|ref|YP_137424.1| - 0.63 9.7 4.4 0.67 9.6 3.1 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction RNA_pol_Rpo13 PF12136.3 gi|55379576|ref|YP_137426.1| - 5.4 6.8 7.5 2.3 7.9 0.1 2.4 2 1 1 3 3 3 0 RNA polymerase Rpo13 subunit HTH domain NIR_SIR PF01077.17 gi|55379578|ref|YP_137428.1| - 5.2e-43 146.1 0.2 7.6e-32 109.8 0.0 2.7 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|55379578|ref|YP_137428.1| - 3.4e-37 125.8 0.0 3.6e-18 64.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain UvrB PF12344.3 gi|55379581|ref|YP_137431.1| - 7.4e-18 63.8 1.1 7.4e-18 63.8 0.8 1.9 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|55379581|ref|YP_137431.1| - 7.8e-15 54.4 0.0 6.4e-14 51.5 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|55379581|ref|YP_137431.1| - 6.1e-11 41.4 9.1 2.5e-10 39.5 6.3 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.10 gi|55379581|ref|YP_137431.1| - 1.6e-09 37.8 0.3 1.6e-08 34.5 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|55379581|ref|YP_137431.1| - 6.3e-06 25.7 0.3 0.00075 19.0 0.0 3.7 4 0 0 4 4 4 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|55379581|ref|YP_137431.1| - 0.00075 19.2 0.0 3.1 7.6 0.0 3.7 4 0 0 4 4 4 2 Part of AAA domain AAA PF00004.24 gi|55379581|ref|YP_137431.1| - 0.0084 16.3 0.4 1.7 8.8 0.0 3.8 4 0 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) UB2H PF14814.1 gi|55379581|ref|YP_137431.1| - 0.019 14.7 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|55379581|ref|YP_137431.1| - 0.056 13.2 0.0 0.056 13.2 0.0 2.7 4 1 0 4 4 4 0 Domain of unknown function DUF87 Met_synt_B12 PF02965.12 gi|55379581|ref|YP_137431.1| - 0.079 12.1 0.0 0.24 10.5 0.0 1.8 2 0 0 2 2 2 0 Vitamin B12 dependent methionine synthase, activation domain HATPase_c PF02518.21 gi|55379582|ref|YP_137432.1| - 4.6e-17 61.7 0.7 1e-16 60.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55379582|ref|YP_137432.1| - 2.4e-05 24.1 0.0 4.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|55379582|ref|YP_137432.1| - 0.0053 16.4 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|55379582|ref|YP_137432.1| - 0.053 13.1 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1049 PF06305.6 gi|55379582|ref|YP_137432.1| - 0.18 11.3 0.1 0.18 11.3 0.1 3.8 5 0 0 5 5 5 0 Protein of unknown function (DUF1049) DUF1440 PF07274.7 gi|55379582|ref|YP_137432.1| - 0.6 10.1 3.8 0.22 11.4 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1440) Methyltransf_18 PF12847.2 gi|55379583|ref|YP_137433.1| - 3.6e-09 37.1 0.2 5e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55379583|ref|YP_137433.1| - 2.8e-06 26.8 0.1 7.2e-06 25.4 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|55379583|ref|YP_137433.1| - 0.00029 20.8 0.7 0.00036 20.5 0.5 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55379583|ref|YP_137433.1| - 0.0066 16.9 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379583|ref|YP_137433.1| - 0.01 16.2 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|55379583|ref|YP_137433.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase PCMT PF01135.14 gi|55379583|ref|YP_137433.1| - 0.019 14.4 0.0 0.034 13.6 0.0 1.3 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GATase_3 PF07685.9 gi|55379583|ref|YP_137433.1| - 0.043 13.4 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain RrnaAD PF00398.15 gi|55379583|ref|YP_137433.1| - 0.088 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|55379583|ref|YP_137433.1| - 0.12 13.2 0.1 0.21 12.4 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain TP_methylase PF00590.15 gi|55379584|ref|YP_137434.1| - 1.1e-36 126.4 0.2 1.5e-36 126.0 0.2 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|55379584|ref|YP_137434.1| - 0.015 15.9 0.3 0.051 14.1 0.1 2.1 1 1 2 3 3 3 0 Glyoxalase-like domain TP_methylase PF00590.15 gi|55379585|ref|YP_137435.1| - 3e-37 128.3 0.3 3.8e-37 128.0 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|55379585|ref|YP_137435.1| - 0.0056 16.8 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily RraB PF06877.6 gi|55379585|ref|YP_137435.1| - 0.088 13.4 0.0 0.31 11.7 0.0 1.9 2 0 0 2 2 2 0 Regulator of ribonuclease activity B CbiG_N PF11760.3 gi|55379586|ref|YP_137436.1| - 2.7e-29 100.7 0.0 6.4e-29 99.4 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|55379586|ref|YP_137436.1| - 4.4e-28 97.9 0.4 1.4e-27 96.3 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.19 gi|55379586|ref|YP_137436.1| - 0.023 14.9 0.9 0.12 12.6 0.2 2.4 3 0 0 3 3 3 0 AIR synthase related protein, N-terminal domain DUF2493 PF10686.4 gi|55379586|ref|YP_137436.1| - 1.6 8.2 4.8 5.8 6.5 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2493) adh_short PF00106.20 gi|55379587|ref|YP_137437.1| - 5.6e-36 123.9 0.4 7.2e-36 123.6 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55379587|ref|YP_137437.1| - 2.7e-30 105.8 0.0 3.3e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55379587|ref|YP_137437.1| - 7e-15 55.1 0.1 9.9e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55379587|ref|YP_137437.1| - 1.4e-07 31.2 0.1 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55379587|ref|YP_137437.1| - 1.3e-06 27.3 0.5 3e-06 26.1 0.2 1.7 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|55379587|ref|YP_137437.1| - 0.0095 14.8 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|55379587|ref|YP_137437.1| - 0.011 15.7 0.8 0.023 14.6 0.6 1.6 1 1 0 1 1 1 0 NADH(P)-binding TrkA_N PF02254.13 gi|55379587|ref|YP_137437.1| - 0.026 14.4 0.2 0.14 12.2 0.1 2.2 2 1 0 2 2 2 0 TrkA-N domain DUF1537 PF07005.6 gi|55379587|ref|YP_137437.1| - 0.1 12.2 0.6 0.31 10.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF1537 TP_methylase PF00590.15 gi|55379588|ref|YP_137438.1| - 1.2e-40 139.4 0.1 1.6e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|55379590|ref|YP_137440.1| - 1.9e-30 106.1 0.2 2.2e-30 105.9 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Fer4_15 PF13459.1 gi|55379591|ref|YP_137441.1| - 2.2e-15 56.9 6.8 3.5e-15 56.3 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|55379591|ref|YP_137441.1| - 1.6e-05 25.2 4.3 2.8e-05 24.4 3.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|55379591|ref|YP_137441.1| - 0.096 12.5 0.4 0.34 10.7 0.3 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.2 gi|55379591|ref|YP_137441.1| - 7.1 6.6 6.2 1.4 8.9 0.2 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain LAGLIDADG_3 PF14528.1 gi|55379592|ref|YP_137442.1| - 0.0015 18.7 0.0 0.0033 17.6 0.0 1.6 2 0 0 2 2 2 1 LAGLIDADG-like domain Rhabdo_NV PF02484.10 gi|55379592|ref|YP_137442.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein DUF4409 PF14365.1 gi|55379592|ref|YP_137442.1| - 0.042 14.0 0.0 0.067 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4409) CbiX PF01903.12 gi|55379593|ref|YP_137443.1| - 3.9e-44 149.0 0.1 5.9e-22 77.7 0.2 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|55379593|ref|YP_137443.1| - 3.3e-08 33.2 0.1 5.8e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|55379593|ref|YP_137443.1| - 5.1e-05 22.4 0.0 0.027 13.5 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|55379593|ref|YP_137443.1| - 0.0019 18.2 0.1 0.0049 16.9 0.0 1.7 2 0 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|55379593|ref|YP_137443.1| - 0.011 15.9 1.1 0.71 10.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) Guanylin PF02058.10 gi|55379593|ref|YP_137443.1| - 0.14 12.2 0.7 0.37 10.8 0.5 1.7 1 1 0 1 1 1 0 Guanylin precursor DUF3209 PF11483.3 gi|55379594|ref|YP_137444.1| - 3.6e-63 211.3 5.5 4e-63 211.2 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) PQQ_2 PF13360.1 gi|55379595|ref|YP_137445.1| - 1.3e-11 44.3 5.7 1.5e-08 34.4 0.6 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|55379595|ref|YP_137445.1| - 8.4e-07 29.0 26.6 0.78 10.0 0.0 8.8 7 1 1 8 8 8 4 PQQ-like domain PQQ PF01011.16 gi|55379595|ref|YP_137445.1| - 0.029 13.8 11.9 0.38 10.3 0.1 6.2 7 0 0 7 7 7 0 PQQ enzyme repeat DUF3552 PF12072.3 gi|55379596|ref|YP_137446.1| - 1.7e-11 43.6 37.1 1.6e-08 34.0 10.9 2.5 2 1 1 3 3 3 2 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|55379596|ref|YP_137446.1| - 2e-05 22.7 4.1 2.6e-05 22.3 2.8 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF4200 PF13863.1 gi|55379596|ref|YP_137446.1| - 0.017 15.0 23.7 0.063 13.2 15.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4554 PF15091.1 gi|55379596|ref|YP_137446.1| - 0.036 12.8 0.5 0.097 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4554) IFT57 PF10498.4 gi|55379596|ref|YP_137446.1| - 0.074 11.7 14.4 0.099 11.3 10.0 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Fumarate_red_D PF02313.12 gi|55379596|ref|YP_137446.1| - 0.19 11.6 1.1 0.32 10.8 0.8 1.3 1 0 0 1 1 1 0 Fumarate reductase subunit D Spc7 PF08317.6 gi|55379596|ref|YP_137446.1| - 0.36 9.4 9.1 0.57 8.7 6.3 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|55379596|ref|YP_137446.1| - 3.6 7.3 18.8 1.4 8.6 5.8 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein CAF-1_p150 PF11600.3 gi|55379596|ref|YP_137446.1| - 3.8 6.8 18.6 5.1 6.4 12.9 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal FliD_C PF07195.7 gi|55379596|ref|YP_137446.1| - 4.3 6.5 8.0 6.8 5.9 0.8 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.1 gi|55379596|ref|YP_137446.1| - 6.6 5.0 10.6 19 3.5 7.3 1.5 1 1 0 1 1 1 0 AAA domain CbtA PF09490.5 gi|55379597|ref|YP_137447.1| - 1.2e-07 31.2 29.4 3.8e-06 26.3 20.4 2.7 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) CbtB PF09489.5 gi|55379598|ref|YP_137448.1| - 2.7e-10 40.0 1.1 2.7e-10 40.0 0.8 1.5 2 0 0 2 2 2 1 Probable cobalt transporter subunit (CbtB) VWA_2 PF13519.1 gi|55379599|ref|YP_137449.1| - 3.3e-19 69.6 3.7 7.5e-19 68.4 2.6 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|55379599|ref|YP_137449.1| - 1.3e-11 44.0 0.0 3.4e-09 36.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|55379599|ref|YP_137449.1| - 6.4e-11 42.2 0.0 1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|55379599|ref|YP_137449.1| - 1.6e-09 37.6 0.0 1.4e-05 24.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|55379599|ref|YP_137449.1| - 9.9e-05 21.2 0.0 0.00039 19.3 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|55379599|ref|YP_137449.1| - 0.002 17.6 0.0 0.075 12.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|55379599|ref|YP_137449.1| - 0.011 15.7 3.7 0.013 15.4 0.0 3.0 4 0 0 4 4 4 0 AAA ATPase domain AAA_22 PF13401.1 gi|55379599|ref|YP_137449.1| - 0.09 12.9 0.0 1.4 9.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain CobN-Mg_chel PF02514.11 gi|55379600|ref|YP_137450.1| - 0 1249.0 0.0 0 1248.4 0.0 1.3 2 0 0 2 2 2 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|55379600|ref|YP_137450.1| - 0.016 14.7 0.0 0.043 13.3 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.10 gi|55379601|ref|YP_137451.1| - 1.1e-52 178.3 1.5 1.3e-52 178.1 1.0 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|55379602|ref|YP_137452.1| - 9.3e-32 110.4 0.2 1.1e-31 110.2 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2062 PF09835.4 gi|55379603|ref|YP_137453.1| - 3.9e-23 81.7 3.2 4.7e-23 81.5 2.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF2755 PF10954.3 gi|55379603|ref|YP_137453.1| - 0.04 13.6 2.0 8.1 6.2 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2755) DUF1469 PF07332.6 gi|55379603|ref|YP_137453.1| - 0.059 13.0 0.4 0.059 13.0 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1469) P12 PF12669.2 gi|55379603|ref|YP_137453.1| - 0.33 11.1 1.8 1.9 8.7 0.2 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family FtsX PF02687.16 gi|55379603|ref|YP_137453.1| - 7.2 6.3 10.1 1.1e+02 2.5 7.2 2.0 1 1 0 1 1 1 0 FtsX-like permease family CbiX PF01903.12 gi|55379604|ref|YP_137454.1| - 2.7e-20 72.4 0.3 2e-10 40.7 0.0 2.2 2 0 0 2 2 2 2 CbiX TrkA_C PF02080.16 gi|55379605|ref|YP_137455.1| - 1.2e-17 63.2 0.1 3.2e-17 61.8 0.0 1.8 2 1 1 3 3 3 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|55379606|ref|YP_137456.1| - 4e-47 160.5 37.1 4.7e-47 160.3 25.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family ADH_zinc_N PF00107.21 gi|55379607|ref|YP_137457.1| - 3e-42 143.2 0.3 1.4e-41 141.0 0.1 2.1 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55379607|ref|YP_137457.1| - 2.2e-21 77.0 0.0 5.1e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55379607|ref|YP_137457.1| - 8.1e-19 67.3 0.0 1.7e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|55379607|ref|YP_137457.1| - 0.00023 20.7 0.9 0.0037 16.8 0.1 2.5 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|55379607|ref|YP_137457.1| - 0.00033 20.7 0.4 0.00049 20.1 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|55379607|ref|YP_137457.1| - 0.00056 19.8 0.9 0.00086 19.2 0.3 1.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.3 gi|55379607|ref|YP_137457.1| - 0.0009 18.9 0.2 0.0021 17.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Semialdhyde_dh PF01118.19 gi|55379607|ref|YP_137457.1| - 0.0031 17.8 0.3 0.0067 16.7 0.2 1.5 2 0 0 2 2 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|55379607|ref|YP_137457.1| - 0.0031 17.4 0.3 0.01 15.7 0.5 1.7 2 0 0 2 2 2 1 short chain dehydrogenase THF_DHG_CYH_C PF02882.14 gi|55379607|ref|YP_137457.1| - 0.0085 15.1 0.1 0.52 9.3 0.0 2.3 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.16 gi|55379607|ref|YP_137457.1| - 0.053 12.9 0.2 0.078 12.3 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|55379607|ref|YP_137457.1| - 0.072 12.3 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family DUF1427 PF07235.6 gi|55379608|ref|YP_137458.1| - 8.9e-07 28.9 5.7 9.5e-07 28.8 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TauE PF01925.14 gi|55379608|ref|YP_137458.1| - 0.054 12.9 3.9 0.057 12.8 2.7 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE Phage_holin_2 PF04550.7 gi|55379608|ref|YP_137458.1| - 0.19 11.8 2.5 0.21 11.7 1.7 1.1 1 0 0 1 1 1 0 Phage holin family 2 DUF2273 PF10031.4 gi|55379608|ref|YP_137458.1| - 1.2 8.7 7.4 2.5 7.7 1.2 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) KGK PF08872.5 gi|55379609|ref|YP_137459.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 KGK domain CarboxypepD_reg PF13620.1 gi|55379610|ref|YP_137460.1| - 3.9e-14 52.4 15.6 1.1e-11 44.5 3.3 4.4 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain DDOST_48kD PF03345.9 gi|55379610|ref|YP_137460.1| - 3e-09 35.9 0.0 5.5e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 Oligosaccharyltransferase 48 kDa subunit beta ABC_transp_aux PF09822.4 gi|55379610|ref|YP_137460.1| - 2.4e-08 33.8 0.0 4.7e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4480 PF13715.1 gi|55379610|ref|YP_137460.1| - 2.6e-08 33.7 2.2 0.00015 21.7 0.4 3.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) PHP PF02811.14 gi|55379610|ref|YP_137460.1| - 6.8e-08 32.4 0.0 1.2e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 PHP domain PEGA PF08308.6 gi|55379610|ref|YP_137460.1| - 2.1e-05 24.1 2.3 1.9 8.3 0.1 4.1 3 0 0 3 3 3 3 PEGA domain DUF4350 PF14258.1 gi|55379610|ref|YP_137460.1| - 0.00015 21.8 0.0 0.0013 18.9 0.0 2.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|55379610|ref|YP_137460.1| - 0.0023 17.6 1.5 0.0093 15.7 1.0 2.1 1 1 0 1 1 1 1 Trehalose utilisation DUF1355 PF07090.6 gi|55379610|ref|YP_137460.1| - 0.031 13.6 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) DUF4159 PF13709.1 gi|55379610|ref|YP_137460.1| - 0.05 12.7 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) IU_nuc_hydro PF01156.14 gi|55379611|ref|YP_137461.1| - 2.2e-77 260.3 4.1 2.5e-77 260.1 2.8 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase MR_MLE_C PF13378.1 gi|55379612|ref|YP_137462.1| - 7e-14 51.7 0.1 1.4e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|55379612|ref|YP_137462.1| - 5.2e-12 46.1 0.4 1.5e-11 44.6 0.1 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|55379612|ref|YP_137462.1| - 4.6e-11 42.7 0.0 7.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.2 gi|55379613|ref|YP_137463.1| - 6.4e-16 58.4 0.1 9.7e-16 57.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|55379613|ref|YP_137463.1| - 3.1e-13 49.7 0.0 4e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GFO_IDH_MocA PF01408.17 gi|55379614|ref|YP_137464.1| - 1.3e-22 80.5 0.3 2.3e-22 79.7 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55379614|ref|YP_137464.1| - 8.6e-07 28.7 0.0 1.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Aldedh PF00171.17 gi|55379616|ref|YP_137466.1| - 3.9e-162 539.7 1.2 4.5e-162 539.5 0.8 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family zf-Di19 PF05605.7 gi|55379617|ref|YP_137467.1| - 0.025 14.6 0.9 0.032 14.3 0.6 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peptidase_M48 PF01435.13 gi|55379618|ref|YP_137468.1| - 7.7e-31 107.4 0.0 1.4e-30 106.5 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|55379618|ref|YP_137468.1| - 8.7e-06 24.9 0.0 1.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4538 PF15061.1 gi|55379618|ref|YP_137468.1| - 0.016 14.4 0.7 0.039 13.2 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) FAA_hydrolase PF01557.13 gi|55379619|ref|YP_137469.1| - 2.2e-52 177.6 0.0 2.8e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UvrC_HhH_N PF08459.6 gi|55379620|ref|YP_137470.1| - 1.4e-44 151.4 0.0 3.3e-44 150.1 0.0 1.7 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.1 gi|55379620|ref|YP_137470.1| - 2e-11 43.8 0.1 5.9e-11 42.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|55379620|ref|YP_137470.1| - 1.1e-10 41.2 0.0 3.5e-10 39.6 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|55379620|ref|YP_137470.1| - 9.5e-10 37.6 0.1 7.9e-06 25.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif UVR PF02151.14 gi|55379620|ref|YP_137470.1| - 1.2e-08 34.2 4.3 2.6e-08 33.1 1.1 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|55379620|ref|YP_137470.1| - 1.6e-07 31.5 0.0 3e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|55379620|ref|YP_137470.1| - 0.0016 18.6 0.0 0.011 15.9 0.0 2.3 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|55379620|ref|YP_137470.1| - 0.0042 17.2 0.0 2.2 8.5 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|55379620|ref|YP_137470.1| - 0.14 12.1 0.0 0.93 9.4 0.0 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix motif zf-ribbon_3 PF13248.1 gi|55379622|ref|YP_137472.1| - 3.8e-05 22.7 1.1 6.3e-05 22.0 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|55379622|ref|YP_137472.1| - 0.00028 20.4 1.9 0.00046 19.8 1.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|55379622|ref|YP_137472.1| - 0.00061 19.1 0.2 0.00089 18.6 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55379622|ref|YP_137472.1| - 0.00081 19.1 0.5 0.0011 18.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|55379622|ref|YP_137472.1| - 0.15 11.8 1.4 6.6 6.6 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF588 PF04535.7 gi|55379622|ref|YP_137472.1| - 0.56 9.7 5.2 0.96 9.0 3.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF588) Aminotran_5 PF00266.14 gi|55379623|ref|YP_137473.1| - 7.9e-28 97.2 0.0 1e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DNA_ligase_aden PF01653.13 gi|55379625|ref|YP_137475.1| - 4e-107 357.7 0.0 5.2e-107 357.4 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|55379625|ref|YP_137475.1| - 4e-28 96.8 1.5 7.9e-28 95.9 1.0 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|55379625|ref|YP_137475.1| - 5.7e-21 74.4 2.6 4.9e-12 45.8 0.1 3.6 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|55379625|ref|YP_137475.1| - 9.1e-20 70.3 0.4 1.5e-16 59.9 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|55379625|ref|YP_137475.1| - 1.1e-10 41.4 0.0 2.7e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|55379625|ref|YP_137475.1| - 1.8e-07 30.4 0.1 0.85 9.4 0.0 4.6 4 0 0 4 4 4 3 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|55379625|ref|YP_137475.1| - 4.5e-07 29.4 3.6 4.5e-07 29.4 2.5 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.15 gi|55379625|ref|YP_137475.1| - 0.0017 18.5 0.0 0.046 13.9 0.0 3.0 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold DUF3701 PF12482.3 gi|55379625|ref|YP_137475.1| - 0.13 12.0 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 Phage integrase protein HATPase_c PF02518.21 gi|55379626|ref|YP_137476.1| - 5.7e-20 71.0 0.1 1.4e-19 69.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|55379626|ref|YP_137476.1| - 1e-18 67.3 0.5 7e-18 64.6 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.1 gi|55379626|ref|YP_137476.1| - 4.4e-16 59.1 1.2 5.7e-05 23.4 0.0 5.0 5 0 0 5 5 5 3 PAS domain PAS_3 PF08447.6 gi|55379626|ref|YP_137476.1| - 3.9e-14 52.5 0.1 1.6e-13 50.5 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|55379626|ref|YP_137476.1| - 5.1e-13 49.0 9.6 3.8e-08 33.3 0.0 4.2 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|55379626|ref|YP_137476.1| - 7.5e-10 38.3 0.0 0.00065 19.4 0.0 3.2 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|55379626|ref|YP_137476.1| - 2.3e-08 34.0 0.2 9.1e-06 25.6 0.0 3.4 2 1 0 2 2 2 1 PAS fold PAS PF00989.19 gi|55379626|ref|YP_137476.1| - 5.1e-08 32.6 0.1 0.0047 16.6 0.0 3.5 3 1 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|55379626|ref|YP_137476.1| - 1.1e-06 28.5 3.7 2.2e-06 27.5 1.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55379626|ref|YP_137476.1| - 0.054 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC2_membrane_2 PF12679.2 gi|55379627|ref|YP_137477.1| - 8.5e-65 218.3 13.1 9.6e-65 218.1 9.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|55379627|ref|YP_137477.1| - 3.1e-14 52.7 11.7 3.1e-14 52.7 8.1 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|55379627|ref|YP_137477.1| - 4.5e-08 32.5 11.2 9.3e-08 31.4 7.8 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|55379627|ref|YP_137477.1| - 1.6e-07 30.6 9.8 1.6e-07 30.6 6.8 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|55379627|ref|YP_137477.1| - 1.4e-06 27.7 2.3 1.4e-06 27.7 1.6 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|55379628|ref|YP_137478.1| - 4.1e-29 101.6 0.0 6.7e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379628|ref|YP_137478.1| - 1.2e-13 51.7 0.0 1e-08 35.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|55379628|ref|YP_137478.1| - 0.0001 22.7 0.0 0.00021 21.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|55379628|ref|YP_137478.1| - 0.0018 17.5 0.0 0.4 9.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|55379628|ref|YP_137478.1| - 0.0019 18.5 0.7 0.0037 17.6 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55379628|ref|YP_137478.1| - 0.0039 16.6 0.0 0.26 10.6 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|55379628|ref|YP_137478.1| - 0.0051 16.7 0.2 0.024 14.5 0.0 2.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|55379628|ref|YP_137478.1| - 0.011 15.1 0.1 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|55379628|ref|YP_137478.1| - 0.017 14.6 0.0 0.19 11.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|55379628|ref|YP_137478.1| - 0.024 14.6 0.0 0.48 10.3 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|55379628|ref|YP_137478.1| - 0.037 13.2 0.0 0.078 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|55379628|ref|YP_137478.1| - 0.048 13.3 0.1 0.35 10.5 0.0 2.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|55379628|ref|YP_137478.1| - 0.056 12.8 0.0 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF1120 PF06551.7 gi|55379628|ref|YP_137478.1| - 0.068 13.4 0.2 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1120) AAA_25 PF13481.1 gi|55379628|ref|YP_137478.1| - 0.099 12.0 0.6 0.26 10.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain Acetyltransf_6 PF13480.1 gi|55379628|ref|YP_137478.1| - 0.13 12.2 0.5 3.3 7.6 0.0 2.6 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Beta_helix PF13229.1 gi|55379630|ref|YP_137480.1| - 5.5e-19 68.4 13.1 4.9e-17 62.1 3.3 2.9 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|55379630|ref|YP_137480.1| - 3.5e-09 36.1 2.8 9.2e-06 24.9 0.1 2.8 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Transglut_core PF01841.14 gi|55379631|ref|YP_137481.1| - 2.6e-30 104.9 1.1 1e-29 103.0 0.0 2.5 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|55379631|ref|YP_137481.1| - 8.4e-07 28.8 4.4 8.4e-07 28.8 3.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|55379631|ref|YP_137481.1| - 0.00031 19.4 0.3 0.00052 18.7 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.1 gi|55379631|ref|YP_137481.1| - 0.00054 19.7 0.0 0.002 17.9 0.0 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily YtkA PF13115.1 gi|55379631|ref|YP_137481.1| - 0.022 15.1 3.6 3.7 7.9 0.0 3.8 3 0 0 3 3 3 0 YtkA-like Fanconi_C PF02106.10 gi|55379632|ref|YP_137482.1| - 0.11 10.8 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Fanconi anaemia group C protein Sporozoite_P67 PF05642.6 gi|55379632|ref|YP_137482.1| - 0.22 9.3 0.8 0.23 9.2 0.6 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF58 PF01882.13 gi|55379633|ref|YP_137483.1| - 1.4e-17 63.6 0.1 4.9e-17 61.8 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|55379633|ref|YP_137483.1| - 1.3e-09 37.9 0.9 1.3e-09 37.9 0.6 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|55379633|ref|YP_137483.1| - 4.3e-07 29.2 0.0 8e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|55379633|ref|YP_137483.1| - 1e-05 25.4 0.9 3.5e-05 23.7 0.1 2.4 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|55379633|ref|YP_137483.1| - 0.0037 17.2 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 CARDB SHOCT PF09851.4 gi|55379635|ref|YP_137485.1| - 3.6e-08 32.5 4.4 7.2e-08 31.6 3.1 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|55379635|ref|YP_137485.1| - 2.4e-05 23.9 3.9 6.5e-05 22.6 2.7 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) MAPEG PF01124.13 gi|55379635|ref|YP_137485.1| - 0.018 14.6 0.6 0.038 13.5 0.4 1.4 1 0 0 1 1 1 0 MAPEG family GvpG PF05120.7 gi|55379635|ref|YP_137485.1| - 0.51 10.1 8.6 1.9 8.3 6.0 1.9 1 1 0 1 1 1 0 Gas vesicle protein G AAA_3 PF07726.6 gi|55379636|ref|YP_137486.1| - 2.2e-65 218.1 0.1 3.4e-65 217.5 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|55379636|ref|YP_137486.1| - 2.7e-14 53.0 0.0 5.3e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|55379636|ref|YP_137486.1| - 0.00023 20.0 0.0 0.0017 17.2 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|55379636|ref|YP_137486.1| - 0.00025 21.2 0.0 0.00082 19.5 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|55379636|ref|YP_137486.1| - 0.00027 20.4 0.0 0.0014 18.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain KaiC PF06745.8 gi|55379636|ref|YP_137486.1| - 0.058 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 KaiC RuvB_N PF05496.7 gi|55379636|ref|YP_137486.1| - 0.068 12.2 0.0 0.45 9.5 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|55379636|ref|YP_137486.1| - 0.082 12.0 0.0 2.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Cys_Met_Meta_PP PF01053.15 gi|55379637|ref|YP_137487.1| - 1.7e-133 444.6 0.0 1.9e-133 444.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|55379637|ref|YP_137487.1| - 1.7e-11 43.6 0.0 2.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|55379637|ref|YP_137487.1| - 5.6e-08 32.2 0.4 5.6e-08 32.2 0.3 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|55379637|ref|YP_137487.1| - 1.9e-07 30.2 0.0 2.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|55379637|ref|YP_137487.1| - 0.014 14.5 0.1 0.043 12.9 0.1 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase Abhydrolase_1 PF00561.15 gi|55379638|ref|YP_137488.1| - 3.5e-24 85.6 0.2 4.7e-24 85.2 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|55379638|ref|YP_137488.1| - 1.6e-18 67.4 7.2 2.4e-18 66.8 5.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55379638|ref|YP_137488.1| - 0.00017 21.3 1.0 0.0023 17.6 0.7 2.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|55379638|ref|YP_137488.1| - 0.00071 18.8 0.1 0.73 9.0 0.0 2.5 2 0 0 2 2 2 2 Prolyl oligopeptidase family GRA6 PF05084.8 gi|55379638|ref|YP_137488.1| - 0.043 13.3 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Granule antigen protein (GRA6) HypA PF01155.14 gi|55379639|ref|YP_137489.1| - 0.00073 19.2 0.1 0.00085 18.9 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DnaJ_CXXCXGXG PF00684.14 gi|55379639|ref|YP_137489.1| - 0.056 13.5 0.3 0.075 13.0 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|55379639|ref|YP_137489.1| - 0.085 12.0 0.8 8.3 5.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55379639|ref|YP_137489.1| - 0.11 12.4 1.2 0.22 11.5 0.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF866 PF05907.8 gi|55379639|ref|YP_137489.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) PRC PF05239.11 gi|55379639|ref|YP_137489.1| - 0.17 11.7 0.6 0.26 11.1 0.1 1.5 2 0 0 2 2 2 0 PRC-barrel domain zf-CCHC PF00098.18 gi|55379639|ref|YP_137489.1| - 3.8 7.5 5.2 2 8.5 0.9 2.1 2 0 0 2 2 2 0 Zinc knuckle ApbA_C PF08546.6 gi|55379641|ref|YP_137491.1| - 1.8e-31 108.7 0.3 3.5e-31 107.7 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|55379641|ref|YP_137491.1| - 3.8e-31 107.5 0.1 7.8e-31 106.5 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|55379641|ref|YP_137491.1| - 0.0007 19.9 1.1 0.0015 18.8 0.0 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|55379641|ref|YP_137491.1| - 0.0032 17.4 0.1 0.011 15.7 0.1 1.9 1 0 0 1 1 1 1 TrkA-N domain Glyco_transf_28 PF03033.15 gi|55379641|ref|YP_137491.1| - 0.009 15.7 1.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase family 28 N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|55379641|ref|YP_137491.1| - 0.036 13.7 0.1 0.078 12.7 0.1 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|55379641|ref|YP_137491.1| - 0.075 13.4 1.0 0.38 11.2 0.2 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase MR_MLE_C PF13378.1 gi|55379642|ref|YP_137492.1| - 4.6e-35 119.9 0.0 1e-34 118.8 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55379642|ref|YP_137492.1| - 1.4e-26 92.8 0.0 2.6e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|55379642|ref|YP_137492.1| - 1.2e-15 57.7 0.0 2.8e-15 56.5 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF502 PF04367.8 gi|55379643|ref|YP_137493.1| - 5.3e-19 67.9 0.3 1.4e-18 66.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Sigma_reg_N PF13800.1 gi|55379643|ref|YP_137493.1| - 0.34 10.9 3.8 5.1 7.1 0.2 3.0 3 0 0 3 3 3 0 Sigma factor regulator N-terminal ABC2_membrane_3 PF12698.2 gi|55379643|ref|YP_137493.1| - 0.98 8.3 8.6 1.5 7.7 6.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Aminotran_4 PF01063.14 gi|55379645|ref|YP_137494.1| - 2e-46 158.3 0.0 2.6e-46 157.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV DUF2583 PF10762.4 gi|55379644|ref|YP_137495.1| - 0.061 13.4 0.1 0.068 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DHBP_synthase PF00926.14 gi|55379646|ref|YP_137496.1| - 6.8e-61 204.8 0.1 7.7e-61 204.7 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|55379647|ref|YP_137497.1| - 3.6e-44 149.2 0.0 5.9e-44 148.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|55379647|ref|YP_137497.1| - 2.6e-07 30.3 0.6 5.9e-07 29.1 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55379647|ref|YP_137497.1| - 3.4e-06 26.3 0.1 6.7e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55379647|ref|YP_137497.1| - 1e-05 25.1 0.4 2e-05 24.1 0.3 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|55379647|ref|YP_137497.1| - 2.5e-05 23.8 0.0 4.7e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|55379647|ref|YP_137497.1| - 2.5e-05 23.8 0.1 6.4e-05 22.5 0.0 1.7 1 1 1 2 2 2 1 HTH domain Fe_dep_repress PF01325.14 gi|55379647|ref|YP_137497.1| - 5.6e-05 23.0 0.0 0.00015 21.6 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|55379647|ref|YP_137497.1| - 0.0002 20.8 0.6 0.0002 20.8 0.4 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|55379647|ref|YP_137497.1| - 0.00024 20.5 0.1 0.00071 19.0 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|55379647|ref|YP_137497.1| - 0.0016 18.7 0.2 0.003 17.8 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|55379647|ref|YP_137497.1| - 0.0074 16.2 0.0 0.055 13.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55379647|ref|YP_137497.1| - 0.017 14.6 0.7 0.039 13.5 0.5 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|55379647|ref|YP_137497.1| - 0.028 14.5 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_1 PF00126.22 gi|55379647|ref|YP_137497.1| - 0.054 13.2 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.7 gi|55379647|ref|YP_137497.1| - 0.055 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|55379647|ref|YP_137497.1| - 0.073 12.8 0.1 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|55379647|ref|YP_137497.1| - 0.076 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55379647|ref|YP_137497.1| - 0.09 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|55379647|ref|YP_137497.1| - 0.098 12.1 0.2 0.25 10.8 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Wyosine_form PF08608.7 gi|55379648|ref|YP_137498.1| - 8.5e-19 67.4 0.1 1.7e-18 66.4 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|55379648|ref|YP_137498.1| - 1.5e-18 67.5 0.4 3.4e-18 66.3 0.3 1.6 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|55379648|ref|YP_137498.1| - 0.00067 19.9 0.1 0.056 13.6 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF1890 PF09001.6 gi|55379648|ref|YP_137498.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) Zn-ribbon_8 PF09723.5 gi|55379650|ref|YP_137500.1| - 4.1e-07 29.8 1.6 4.1e-07 29.8 1.1 2.0 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.14 gi|55379650|ref|YP_137500.1| - 0.00028 20.5 1.0 0.00028 20.5 0.7 1.9 1 1 1 2 2 2 1 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|55379650|ref|YP_137500.1| - 0.0059 16.3 1.1 0.0059 16.3 0.8 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Zn_Tnp_IS1 PF03811.8 gi|55379650|ref|YP_137500.1| - 0.011 15.1 7.6 0.1 12.1 0.1 2.9 3 0 0 3 3 3 0 InsA N-terminal domain DZR PF12773.2 gi|55379650|ref|YP_137500.1| - 0.012 15.3 6.7 0.045 13.5 4.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|55379650|ref|YP_137500.1| - 0.017 15.4 3.9 0.49 10.8 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type GFA PF04828.9 gi|55379650|ref|YP_137500.1| - 0.023 14.6 5.4 0.17 11.8 1.5 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DNA_ligase_ZBD PF03119.11 gi|55379650|ref|YP_137500.1| - 0.026 14.2 1.1 0.066 12.9 0.4 2.0 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|55379650|ref|YP_137500.1| - 0.034 13.8 7.2 0.14 11.8 0.1 2.9 3 0 0 3 3 3 0 Nudix N-terminal Rubredoxin PF00301.15 gi|55379650|ref|YP_137500.1| - 0.082 12.7 2.4 2.3 8.1 1.6 2.4 1 1 0 1 1 1 0 Rubredoxin SprT-like PF10263.4 gi|55379650|ref|YP_137500.1| - 0.084 12.5 0.4 0.081 12.5 0.3 1.1 1 0 0 1 1 1 0 SprT-like family DUF2072 PF09845.4 gi|55379650|ref|YP_137500.1| - 0.089 12.7 0.4 0.16 11.9 0.3 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Lar_restr_allev PF14354.1 gi|55379650|ref|YP_137500.1| - 0.11 12.8 9.7 0.37 11.1 2.4 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS91 PF14319.1 gi|55379650|ref|YP_137500.1| - 0.15 11.5 0.2 0.15 11.5 0.1 1.5 2 0 0 2 2 1 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|55379650|ref|YP_137500.1| - 0.24 11.1 5.0 9.2 6.1 0.1 2.9 2 1 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.9 gi|55379650|ref|YP_137500.1| - 0.27 10.9 0.4 0.27 10.9 0.3 2.7 3 0 0 3 3 3 0 Adenylate kinase, active site lid TFIIS_C PF01096.13 gi|55379650|ref|YP_137500.1| - 0.33 10.6 5.8 14 5.3 0.0 3.2 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.14 gi|55379650|ref|YP_137500.1| - 0.49 9.9 3.4 2.1 7.9 0.1 2.6 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|55379650|ref|YP_137500.1| - 0.56 9.7 6.2 2.3 7.7 0.0 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|55379650|ref|YP_137500.1| - 0.58 9.9 0.1 0.58 9.9 0.1 2.8 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|55379650|ref|YP_137500.1| - 0.71 9.8 5.8 3.2 7.8 0.1 2.9 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.1 gi|55379650|ref|YP_137500.1| - 0.78 9.6 5.1 5.5 6.9 0.6 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|55379650|ref|YP_137500.1| - 1 9.4 7.3 2.9 8.0 0.0 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-tcix PF14952.1 gi|55379650|ref|YP_137500.1| - 1 8.7 10.5 2.1 7.7 0.0 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding ZZ PF00569.12 gi|55379650|ref|YP_137500.1| - 1.1 8.9 4.3 19 4.8 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, ZZ type zinc_ribbon_4 PF13717.1 gi|55379650|ref|YP_137500.1| - 1.3 8.7 6.2 6.4 6.5 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|55379650|ref|YP_137500.1| - 1.4 9.0 7.2 35 4.5 0.7 2.3 1 1 1 2 2 2 0 DnaJ central domain YhfH PF14149.1 gi|55379650|ref|YP_137500.1| - 1.5 8.6 5.1 24 4.8 0.0 3.0 3 0 0 3 3 3 0 YhfH-like protein Ribosomal_L37ae PF01780.14 gi|55379650|ref|YP_137500.1| - 1.7 8.5 5.2 0.92 9.4 0.4 2.5 2 1 0 2 2 2 0 Ribosomal L37ae protein family RNHCP PF12647.2 gi|55379650|ref|YP_137500.1| - 2.3 8.1 5.6 0.23 11.3 0.5 1.8 2 0 0 2 2 2 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|55379650|ref|YP_137500.1| - 2.5 7.5 9.5 1.5 8.1 0.2 2.6 2 1 0 3 3 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|55379650|ref|YP_137500.1| - 2.8 7.5 7.7 4.3 7.0 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-trcl PF13451.1 gi|55379650|ref|YP_137500.1| - 2.9 7.6 13.2 2.3 7.9 1.1 3.8 3 1 1 4 4 4 0 Probable zinc-binding domain zinc_ribbon_2 PF13240.1 gi|55379650|ref|YP_137500.1| - 3.3 7.3 9.3 0.29 10.6 1.3 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55379650|ref|YP_137500.1| - 4 7.3 8.7 6.1 6.7 2.2 2.8 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55379650|ref|YP_137500.1| - 4.6 6.5 9.3 0.39 9.9 0.3 2.6 2 1 1 3 3 3 0 zinc-ribbon domain DUF1610 PF07754.6 gi|55379650|ref|YP_137500.1| - 5.4 7.2 8.7 6.8 6.9 0.6 3.0 3 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-H2C2_2 PF13465.1 gi|55379650|ref|YP_137500.1| - 6.8 7.1 7.6 6.7 7.2 0.1 2.9 3 0 0 3 3 3 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|55379650|ref|YP_137500.1| - 9.9 5.9 7.8 4.8 6.9 1.7 2.4 2 1 1 3 3 2 0 Putative transposase DNA-binding domain CMD PF02627.15 gi|55379651|ref|YP_137501.1| - 1.3e-11 44.1 0.5 2.4e-11 43.3 0.4 1.5 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1440 PF07274.7 gi|55379652|ref|YP_137502.1| - 0.014 15.4 2.9 0.25 11.3 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) DUF2053 PF09767.4 gi|55379652|ref|YP_137502.1| - 0.095 12.6 0.2 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2053) TrmB PF01978.14 gi|55379653|ref|YP_137503.1| - 1.8e-07 30.7 0.0 2.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379653|ref|YP_137503.1| - 8e-07 28.6 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55379653|ref|YP_137503.1| - 4.1e-06 26.4 0.1 1e-05 25.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55379653|ref|YP_137503.1| - 1.2e-05 24.7 0.0 2.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|55379653|ref|YP_137503.1| - 2.6e-05 23.7 0.1 7.5e-05 22.3 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|55379653|ref|YP_137503.1| - 0.00022 20.5 0.0 0.00034 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|55379653|ref|YP_137503.1| - 0.00041 19.7 0.1 0.00095 18.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|55379653|ref|YP_137503.1| - 0.00056 19.1 0.0 0.00098 18.4 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain MarR PF01047.17 gi|55379653|ref|YP_137503.1| - 0.0025 17.4 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|55379653|ref|YP_137503.1| - 0.0027 17.8 0.5 0.013 15.5 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|55379653|ref|YP_137503.1| - 0.0076 15.7 0.0 0.015 14.8 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_28 PF13518.1 gi|55379653|ref|YP_137503.1| - 0.016 15.2 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55379653|ref|YP_137503.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|55379653|ref|YP_137503.1| - 0.053 13.1 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|55379653|ref|YP_137503.1| - 0.055 13.5 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Desulfoferrod_N PF06397.7 gi|55379653|ref|YP_137503.1| - 1.2 8.6 5.7 11 5.4 4.0 2.3 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain NifU PF01106.12 gi|55379654|ref|YP_137504.1| - 5.4e-11 42.1 0.0 8.1e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 NifU-like domain DUF46 PF01864.12 gi|55379655|ref|YP_137505.1| - 7.2e-46 156.2 0.8 8.4e-46 156.0 0.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|55379655|ref|YP_137505.1| - 1.1e-05 25.2 1.0 1.1e-05 25.2 0.7 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|55379655|ref|YP_137505.1| - 2.1 7.9 11.2 1.6 8.3 1.3 2.8 2 1 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.1 gi|55379655|ref|YP_137505.1| - 9 5.9 6.7 64 3.2 4.6 2.2 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Porphobil_deam PF01379.15 gi|55379657|ref|YP_137507.1| - 3.9e-63 212.2 0.4 1.4e-51 174.4 0.1 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|55379657|ref|YP_137507.1| - 3.3e-11 43.1 0.2 8.7e-11 41.7 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.1 gi|55379657|ref|YP_137507.1| - 0.032 14.2 0.4 0.11 12.4 0.3 1.9 1 0 0 1 1 1 0 Up-regulated During Septation TP_methylase PF00590.15 gi|55379658|ref|YP_137508.1| - 1.7e-53 181.4 0.3 2e-53 181.2 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4350 PF14258.1 gi|55379658|ref|YP_137508.1| - 0.11 12.6 0.1 16 5.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) RFamide_26RFa PF11109.3 gi|55379658|ref|YP_137508.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 HEM4 PF02602.10 gi|55379659|ref|YP_137509.1| - 1.7e-46 158.3 4.5 2e-46 158.1 3.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD PspA_IM30 PF04012.7 gi|55379660|ref|YP_137510.1| - 4.7e-28 98.0 24.6 5.8e-28 97.7 17.1 1.0 1 0 0 1 1 1 1 PspA/IM30 family AAA_13 PF13166.1 gi|55379660|ref|YP_137510.1| - 0.00016 20.3 8.8 0.00019 20.0 6.1 1.0 1 0 0 1 1 1 1 AAA domain Phage_GP20 PF06810.6 gi|55379660|ref|YP_137510.1| - 0.0022 17.4 5.0 0.0022 17.4 3.5 2.6 1 1 2 3 3 3 1 Phage minor structural protein GP20 Filament PF00038.16 gi|55379660|ref|YP_137510.1| - 0.0025 17.3 22.7 0.54 9.6 11.3 2.9 1 1 1 2 2 2 2 Intermediate filament protein DUF3166 PF11365.3 gi|55379660|ref|YP_137510.1| - 0.0079 16.6 2.0 0.0079 16.6 1.4 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF3166) Snf7 PF03357.16 gi|55379660|ref|YP_137510.1| - 0.0087 15.4 19.8 0.97 8.7 13.7 2.7 1 1 0 1 1 1 1 Snf7 DUF972 PF06156.8 gi|55379660|ref|YP_137510.1| - 0.014 15.7 13.3 0.28 11.5 0.5 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|55379660|ref|YP_137510.1| - 0.026 13.9 20.9 0.28 10.6 1.5 4.3 3 1 1 4 4 4 0 Septum formation initiator IncA PF04156.9 gi|55379660|ref|YP_137510.1| - 0.043 13.4 20.1 0.75 9.3 5.8 2.2 1 1 1 2 2 2 0 IncA protein DUF948 PF06103.6 gi|55379660|ref|YP_137510.1| - 0.11 12.3 4.7 7.6 6.4 0.6 3.3 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Herpes_UL6 PF01763.11 gi|55379660|ref|YP_137510.1| - 0.17 10.0 9.6 0.15 10.1 6.0 1.4 1 1 0 1 1 1 0 Herpesvirus UL6 like Not3 PF04065.10 gi|55379660|ref|YP_137510.1| - 0.56 9.4 13.8 1.6 7.9 6.2 2.2 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF342 PF03961.8 gi|55379660|ref|YP_137510.1| - 0.58 8.5 11.8 0.78 8.0 4.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) COG5 PF10392.4 gi|55379660|ref|YP_137510.1| - 0.59 10.1 9.1 0.85 9.5 3.6 2.6 1 1 1 3 3 3 0 Golgi transport complex subunit 5 Reo_sigmaC PF04582.7 gi|55379660|ref|YP_137510.1| - 0.89 8.6 5.0 3.2 6.8 1.0 2.4 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Flu_NS2 PF00601.14 gi|55379660|ref|YP_137510.1| - 1 9.5 4.3 12 6.1 0.2 3.2 1 1 3 4 4 4 0 Influenza non-structural protein (NS2) DUF4615 PF15393.1 gi|55379660|ref|YP_137510.1| - 1.1 9.5 7.2 0.42 10.8 2.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4615) TBPIP PF07106.8 gi|55379660|ref|YP_137510.1| - 1.1 8.7 12.0 1.5 8.3 1.5 3.0 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|55379660|ref|YP_137510.1| - 1.1 7.7 16.5 0.081 11.5 6.5 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|55379660|ref|YP_137510.1| - 1.3 9.0 14.0 0.39 10.7 3.1 3.5 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|55379660|ref|YP_137510.1| - 1.4 7.8 22.3 0.3 10.0 7.6 2.2 1 1 1 2 2 2 0 Autophagy protein Apg6 WXG100 PF06013.7 gi|55379660|ref|YP_137510.1| - 1.5 8.8 12.5 9.2 6.3 3.1 3.8 1 1 3 4 4 4 0 Proteins of 100 residues with WXG Snapin_Pallidin PF14712.1 gi|55379660|ref|YP_137510.1| - 2.3 8.5 9.9 1.5 9.2 2.1 3.4 2 1 1 3 3 3 0 Snapin/Pallidin DUF310 PF03750.8 gi|55379660|ref|YP_137510.1| - 2.4 8.3 7.9 13 5.9 2.3 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF310) Lge1 PF11488.3 gi|55379660|ref|YP_137510.1| - 3.5 7.8 14.8 3.3 7.9 1.0 3.6 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 DUF3332 PF11810.3 gi|55379660|ref|YP_137510.1| - 3.9 7.0 5.6 2.3 7.8 1.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3332) PolyA_pol PF01743.15 gi|55379660|ref|YP_137510.1| - 3.9 7.6 12.8 0.75 10.0 2.2 3.0 1 1 3 4 4 4 0 Poly A polymerase head domain Osmo_CC PF08946.5 gi|55379660|ref|YP_137510.1| - 4.2 7.4 9.9 2.8 8.0 0.3 4.3 2 1 3 5 5 4 0 Osmosensory transporter coiled coil DUF904 PF06005.7 gi|55379660|ref|YP_137510.1| - 7.3 6.9 17.5 0.19 12.0 1.7 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF904) DUF4349 PF14257.1 gi|55379660|ref|YP_137510.1| - 7.6 5.6 29.4 0.22 10.7 1.1 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Syntaxin-6_N PF09177.6 gi|55379660|ref|YP_137510.1| - 8 6.9 11.9 23 5.4 0.1 3.4 1 1 3 4 4 4 0 Syntaxin 6, N-terminal V_ATPase_I PF01496.14 gi|55379660|ref|YP_137510.1| - 8.5 4.0 12.2 6.2 4.5 6.3 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|55379660|ref|YP_137510.1| - 9.3 5.0 15.2 12 4.7 9.8 1.6 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DHHA1 PF02272.14 gi|55379663|ref|YP_137513.1| - 4.5e-15 55.0 1.2 9.9e-15 54.0 0.8 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|55379663|ref|YP_137513.1| - 1.2e-11 44.5 0.2 1.7e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 DHH family DUF2892 PF11127.3 gi|55379664|ref|YP_137514.1| - 0.056 13.2 1.5 0.071 12.9 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) HTH_43 PF09904.4 gi|55379664|ref|YP_137514.1| - 0.065 13.0 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix NOSIC PF08060.8 gi|55379665|ref|YP_137515.1| - 0.068 12.9 1.3 0.59 9.9 0.1 2.5 3 0 0 3 3 3 0 NOSIC (NUC001) domain FliD_C PF07195.7 gi|55379665|ref|YP_137515.1| - 0.16 11.2 0.4 6.4 5.9 0.0 2.0 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ABC_transp_aux PF09822.4 gi|55379666|ref|YP_137516.1| - 7.8e-06 25.5 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|55379666|ref|YP_137516.1| - 0.00085 19.4 0.7 0.0019 18.3 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.13 gi|55379667|ref|YP_137517.1| - 2.8e-19 69.4 2.4 1.4e-11 44.3 0.2 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|55379667|ref|YP_137517.1| - 1.5e-05 24.7 0.2 4.9e-05 23.0 0.1 1.8 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|55379667|ref|YP_137517.1| - 0.0008 18.2 0.0 0.0011 17.7 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Chlor_dismutase PF06778.7 gi|161723231|ref|YP_137518.2| - 2.5e-51 174.1 0.1 4.5e-51 173.3 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|161723231|ref|YP_137518.2| - 3.8e-09 36.4 0.1 3.8e-09 36.4 0.1 3.2 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase DUF849 PF05853.7 gi|161723231|ref|YP_137518.2| - 5.4 5.8 5.8 11 4.7 4.0 1.5 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) Methyltransf_31 PF13847.1 gi|55379669|ref|YP_137519.1| - 1.1e-19 70.4 0.0 1.5e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379669|ref|YP_137519.1| - 1.9e-18 67.0 0.0 5.3e-18 65.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55379669|ref|YP_137519.1| - 1.4e-17 63.9 0.0 2.6e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379669|ref|YP_137519.1| - 2e-16 60.1 0.0 2.6e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55379669|ref|YP_137519.1| - 7.4e-14 51.9 0.1 1.7e-13 50.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55379669|ref|YP_137519.1| - 8.2e-14 51.8 0.1 2.5e-13 50.3 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379669|ref|YP_137519.1| - 1.8e-11 44.0 0.4 3.3e-11 43.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55379669|ref|YP_137519.1| - 6.9e-10 38.5 0.0 1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|55379669|ref|YP_137519.1| - 5.6e-09 35.4 0.0 7.8e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|55379669|ref|YP_137519.1| - 8.9e-09 35.1 0.0 1.3e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|55379669|ref|YP_137519.1| - 4.7e-06 26.3 0.0 6.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|55379669|ref|YP_137519.1| - 1.1e-05 24.5 0.0 1.5e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TPMT PF05724.6 gi|55379669|ref|YP_137519.1| - 6.6e-05 22.4 0.0 0.00053 19.5 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_2 PF00891.13 gi|55379669|ref|YP_137519.1| - 0.00017 20.8 0.2 0.00029 20.1 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.13 gi|55379669|ref|YP_137519.1| - 0.00019 20.6 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|55379669|ref|YP_137519.1| - 0.00055 19.3 0.0 0.00074 18.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|55379669|ref|YP_137519.1| - 0.0007 19.0 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|55379669|ref|YP_137519.1| - 0.0011 17.7 0.0 0.0016 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|55379669|ref|YP_137519.1| - 0.0073 15.4 0.4 0.0094 15.1 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.13 gi|55379669|ref|YP_137519.1| - 0.0082 15.4 0.0 0.48 9.6 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_4 PF02390.12 gi|55379669|ref|YP_137519.1| - 0.011 14.8 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase UPF0020 PF01170.13 gi|55379669|ref|YP_137519.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|55379669|ref|YP_137519.1| - 0.012 14.7 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB URO-D PF01208.12 gi|55379669|ref|YP_137519.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) FtsJ PF01728.14 gi|55379669|ref|YP_137519.1| - 0.02 14.8 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase DREV PF05219.7 gi|55379669|ref|YP_137519.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase NifU_N PF01592.11 gi|55379670|ref|YP_137520.1| - 1.5e-28 99.2 0.2 1.7e-28 99.1 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|55379670|ref|YP_137520.1| - 0.052 13.1 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain Cupin_2 PF07883.6 gi|55379671|ref|YP_137521.1| - 2.4e-08 33.3 0.1 4.2e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Aminotran_5 PF00266.14 gi|55379672|ref|YP_137522.1| - 1.2e-145 484.9 0.1 1.3e-145 484.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|55379672|ref|YP_137522.1| - 2.9e-11 43.0 0.6 4.9e-11 42.2 0.4 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|55379672|ref|YP_137522.1| - 1.9e-10 40.3 0.1 2.6e-10 39.9 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|55379672|ref|YP_137522.1| - 6.5e-06 24.8 0.1 2e-05 23.2 0.1 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|55379672|ref|YP_137522.1| - 0.00082 18.2 0.0 0.0017 17.2 0.0 1.4 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|55379672|ref|YP_137522.1| - 0.0022 16.3 0.1 0.0047 15.2 0.1 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MYT1 PF08474.6 gi|55379672|ref|YP_137522.1| - 0.081 12.4 0.0 0.72 9.2 0.0 2.1 2 0 0 2 2 2 0 Myelin transcription factor 1 DUF457 PF04307.9 gi|55379673|ref|YP_137523.1| - 0.00018 20.8 3.9 0.00024 20.4 2.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Cyt_c_ox_IV PF12270.3 gi|55379673|ref|YP_137523.1| - 8.2 6.1 7.4 0.87 9.3 0.1 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF424 PF04242.8 gi|55379674|ref|YP_137524.1| - 5.9e-31 106.3 0.0 6.4e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_11 PF13414.1 gi|55379675|ref|YP_137525.1| - 6.3e-23 80.2 18.1 1.7e-12 46.7 2.3 3.2 1 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|55379675|ref|YP_137525.1| - 7.8e-23 79.0 6.3 4.9e-06 25.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|55379675|ref|YP_137525.1| - 2.5e-20 70.6 14.2 1.9e-05 24.2 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|55379675|ref|YP_137525.1| - 1.7e-16 60.3 18.0 1.4e-09 38.3 0.8 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|55379675|ref|YP_137525.1| - 4.1e-15 55.4 14.3 3.9e-08 33.1 3.0 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|55379675|ref|YP_137525.1| - 1.3e-13 49.6 1.3 0.0085 15.8 0.0 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|55379675|ref|YP_137525.1| - 5.3e-13 48.3 18.6 0.0014 19.0 0.1 5.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|55379675|ref|YP_137525.1| - 6.6e-13 47.7 1.6 0.0047 17.0 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|55379675|ref|YP_137525.1| - 1.4e-10 40.1 11.7 0.00094 18.8 0.2 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|55379675|ref|YP_137525.1| - 1.8e-08 34.0 7.3 0.0067 16.2 0.1 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|55379675|ref|YP_137525.1| - 3.3e-07 30.3 5.3 1.7 9.3 0.0 5.2 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|55379675|ref|YP_137525.1| - 5.2e-07 29.3 16.1 0.0021 17.9 0.4 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|55379675|ref|YP_137525.1| - 1.2e-06 28.7 12.0 0.0025 18.1 0.6 3.3 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|55379675|ref|YP_137525.1| - 0.002 18.3 0.4 0.002 18.3 0.3 5.0 6 0 0 6 6 4 2 Tetratricopeptide repeat YfiO PF13525.1 gi|55379675|ref|YP_137525.1| - 0.024 14.0 0.2 0.04 13.3 0.1 1.5 1 1 0 1 1 1 0 Outer membrane lipoprotein Creatininase PF02633.9 gi|55379675|ref|YP_137525.1| - 0.025 13.6 0.7 0.038 13.0 0.5 1.2 1 0 0 1 1 1 0 Creatinine amidohydrolase Apc5 PF12862.2 gi|55379675|ref|YP_137525.1| - 0.042 13.6 1.7 19 5.2 0.9 3.1 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_20 PF14561.1 gi|55379675|ref|YP_137525.1| - 0.58 10.3 9.0 1.3 9.1 0.1 3.0 2 2 1 3 3 3 0 Tetratricopeptide repeat Acetyltransf_11 PF13720.1 gi|55379675|ref|YP_137525.1| - 0.76 10.0 2.6 0.6 10.3 0.2 2.0 3 0 0 3 3 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LigT_PEase PF02834.11 gi|55379676|ref|YP_137526.1| - 6.8e-20 70.8 0.0 2e-11 43.7 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|55379676|ref|YP_137526.1| - 1e-16 61.0 0.0 1.2e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|55379676|ref|YP_137526.1| - 2e-08 34.2 0.0 2.2e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Zip PF02535.17 gi|55379677|ref|YP_137527.1| - 8.8e-17 61.0 21.8 1.4e-12 47.2 3.8 3.0 2 1 1 3 3 3 3 ZIP Zinc transporter TAT_signal PF10518.4 gi|55379678|ref|YP_137528.1| - 0.13 12.3 1.4 0.19 11.8 1.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_L39 PF00832.15 gi|55379679|ref|YP_137529.1| - 2.7e-21 74.7 7.1 3.3e-21 74.4 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|55379680|ref|YP_137530.1| - 4.3e-25 87.2 0.5 5e-25 86.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|297616205|ref|YP_003710346.1| - 8.6e-71 237.1 0.0 9.8e-71 236.9 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Matrilin_ccoil PF10393.4 gi|55379681|ref|YP_137531.1| - 0.035 13.4 0.1 0.035 13.4 0.0 1.1 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF1272 PF06906.6 gi|55379682|ref|YP_137532.1| - 0.0011 18.8 0.9 0.0012 18.6 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.7 gi|55379682|ref|YP_137532.1| - 0.0015 18.2 1.1 0.16 11.8 0.1 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|55379682|ref|YP_137532.1| - 0.002 17.8 1.1 0.0023 17.6 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|55379682|ref|YP_137532.1| - 0.0024 17.5 1.6 0.2 11.3 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|55379682|ref|YP_137532.1| - 0.0055 16.1 0.6 2.2 7.8 0.0 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|55379682|ref|YP_137532.1| - 0.011 15.2 1.9 0.013 15.0 0.1 1.9 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|55379682|ref|YP_137532.1| - 0.012 15.3 1.7 2.3 7.9 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|55379682|ref|YP_137532.1| - 0.028 14.3 2.3 0.093 12.7 0.2 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DnaJ_CXXCXGXG PF00684.14 gi|55379682|ref|YP_137532.1| - 0.038 14.0 0.4 0.04 13.9 0.3 1.1 1 0 0 1 1 1 0 DnaJ central domain DUF2296 PF10058.4 gi|55379682|ref|YP_137532.1| - 0.038 13.7 1.3 0.16 11.7 0.9 1.8 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) HypA PF01155.14 gi|55379682|ref|YP_137532.1| - 0.11 12.1 0.3 0.12 12.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|55379682|ref|YP_137532.1| - 0.14 12.2 1.5 0.31 11.0 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|55379682|ref|YP_137532.1| - 0.14 11.4 2.4 0.81 9.0 0.3 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|55379682|ref|YP_137532.1| - 0.17 11.9 1.7 12 6.0 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_3 PF14369.1 gi|55379682|ref|YP_137532.1| - 0.28 11.2 4.9 8.7 6.4 3.4 2.1 1 1 0 1 1 1 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|55379682|ref|YP_137532.1| - 0.31 10.8 2.7 1.4 8.8 0.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55379682|ref|YP_137532.1| - 0.53 10.2 4.3 6 6.9 2.8 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|55379682|ref|YP_137532.1| - 0.81 9.6 3.8 1.9 8.5 2.6 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Opy2 PF09463.5 gi|55379682|ref|YP_137532.1| - 2 8.5 4.9 9.2 6.4 3.6 1.8 1 1 1 2 2 2 0 Opy2 protein Prefoldin PF02996.12 gi|55379683|ref|YP_137533.1| - 4.7e-24 84.3 7.4 4.7e-24 84.3 5.1 1.5 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|55379683|ref|YP_137533.1| - 9.2e-08 31.8 25.9 2e-05 24.2 6.7 2.6 1 1 2 3 3 3 2 Prefoldin subunit Ax_dynein_light PF10211.4 gi|55379683|ref|YP_137533.1| - 0.00016 21.5 17.8 0.013 15.3 5.7 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain Spc7 PF08317.6 gi|55379683|ref|YP_137533.1| - 0.00023 19.9 12.3 0.0087 14.7 2.1 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein TBPIP PF07106.8 gi|55379683|ref|YP_137533.1| - 0.00029 20.4 16.2 0.031 13.8 4.6 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4618 PF15397.1 gi|55379683|ref|YP_137533.1| - 0.00035 19.9 18.3 0.0053 16.1 5.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) APG6 PF04111.7 gi|55379683|ref|YP_137533.1| - 0.00053 19.1 22.4 0.01 14.9 7.5 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 Phage_GP20 PF06810.6 gi|55379683|ref|YP_137533.1| - 0.00066 19.1 19.5 0.0024 17.3 1.1 2.1 2 0 0 2 2 2 1 Phage minor structural protein GP20 Sipho_Gp157 PF05565.6 gi|55379683|ref|YP_137533.1| - 0.0011 18.5 1.0 0.0011 18.5 0.7 2.2 2 0 0 2 2 2 1 Siphovirus Gp157 GAS PF13851.1 gi|55379683|ref|YP_137533.1| - 0.0012 18.1 13.5 0.042 13.0 0.3 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|55379683|ref|YP_137533.1| - 0.0014 18.0 0.6 0.0014 18.0 0.4 3.1 2 1 1 3 3 2 1 Septum formation initiator Reo_sigmaC PF04582.7 gi|55379683|ref|YP_137533.1| - 0.0025 17.0 1.2 0.0036 16.5 0.8 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|55379683|ref|YP_137533.1| - 0.0064 16.6 18.6 0.023 14.8 1.4 2.6 2 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|55379683|ref|YP_137533.1| - 0.0072 16.2 14.7 0.051 13.4 4.6 2.1 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding Laminin_II PF06009.7 gi|55379683|ref|YP_137533.1| - 0.008 15.9 8.1 0.58 9.9 0.3 2.2 2 0 0 2 2 2 2 Laminin Domain II HR1 PF02185.11 gi|55379683|ref|YP_137533.1| - 0.01 15.5 15.9 0.17 11.6 0.4 2.3 2 0 0 2 2 2 0 Hr1 repeat Tropomyosin_1 PF12718.2 gi|55379683|ref|YP_137533.1| - 0.011 15.5 29.5 0.031 14.1 2.5 2.1 2 0 0 2 2 2 0 Tropomyosin like AAA_13 PF13166.1 gi|55379683|ref|YP_137533.1| - 0.012 14.1 14.8 0.051 12.0 2.0 2.0 2 0 0 2 2 2 0 AAA domain IncA PF04156.9 gi|55379683|ref|YP_137533.1| - 0.013 15.0 21.8 0.22 11.1 2.7 2.2 2 0 0 2 2 2 0 IncA protein Nsp1_C PF05064.8 gi|55379683|ref|YP_137533.1| - 0.019 14.5 2.2 0.019 14.5 1.5 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Filament PF00038.16 gi|55379683|ref|YP_137533.1| - 0.022 14.2 18.3 0.24 10.8 6.4 2.0 2 0 0 2 2 2 0 Intermediate filament protein EzrA PF06160.7 gi|55379683|ref|YP_137533.1| - 0.025 12.7 16.8 0.037 12.2 1.3 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|55379683|ref|YP_137533.1| - 0.026 14.7 19.2 0.51 10.6 3.6 2.8 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|55379683|ref|YP_137533.1| - 0.027 14.3 10.7 0.28 11.0 0.6 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|55379683|ref|YP_137533.1| - 0.035 14.2 11.2 0.6 10.2 3.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF972 PF06156.8 gi|55379683|ref|YP_137533.1| - 0.046 14.0 18.1 0.25 11.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF948 PF06103.6 gi|55379683|ref|YP_137533.1| - 0.056 13.3 0.9 0.056 13.3 0.6 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2968 PF11180.3 gi|55379683|ref|YP_137533.1| - 0.059 12.7 18.5 0.48 9.7 6.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) CENP-F_leu_zip PF10473.4 gi|55379683|ref|YP_137533.1| - 0.063 13.1 24.3 0.18 11.6 1.4 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 YlqD PF11068.3 gi|55379683|ref|YP_137533.1| - 0.063 13.3 27.6 0.17 11.9 2.1 2.3 2 0 0 2 2 2 0 YlqD protein DivIVA PF05103.8 gi|55379683|ref|YP_137533.1| - 0.064 13.2 22.2 0.065 13.2 3.4 2.2 2 0 0 2 2 2 0 DivIVA protein DUF3086 PF11285.3 gi|55379683|ref|YP_137533.1| - 0.074 11.8 10.6 0.89 8.3 4.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Prominin PF05478.6 gi|55379683|ref|YP_137533.1| - 0.08 10.4 6.1 1.1 6.6 1.2 2.0 2 0 0 2 2 2 0 Prominin DUF4337 PF14235.1 gi|55379683|ref|YP_137533.1| - 0.086 12.6 20.5 0.24 11.2 8.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) TP_methylase PF00590.15 gi|55379683|ref|YP_137533.1| - 0.095 12.3 0.1 0.095 12.3 0.1 1.8 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1664 PF07889.7 gi|55379683|ref|YP_137533.1| - 0.098 12.4 12.1 0.33 10.7 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Kinetocho_Slk19 PF12709.2 gi|55379683|ref|YP_137533.1| - 0.12 12.5 14.8 1.3 9.1 1.7 2.3 2 0 0 2 2 2 0 Central kinetochore-associated AAA_27 PF13514.1 gi|55379683|ref|YP_137533.1| - 0.14 9.8 18.4 0.25 8.9 12.8 1.4 1 1 0 1 1 1 0 AAA domain Spc24 PF08286.6 gi|55379683|ref|YP_137533.1| - 0.18 11.5 21.1 0.22 11.2 0.3 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 TMF_DNA_bd PF12329.3 gi|55379683|ref|YP_137533.1| - 0.18 11.6 22.4 0.039 13.7 5.4 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4446 PF14584.1 gi|55379683|ref|YP_137533.1| - 0.19 11.5 11.0 1.3 8.7 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) HemX PF04375.9 gi|55379683|ref|YP_137533.1| - 0.19 10.3 17.5 0.89 8.0 0.7 2.1 2 0 0 2 2 2 0 HemX Fzo_mitofusin PF04799.8 gi|55379683|ref|YP_137533.1| - 0.2 11.0 10.6 0.52 9.6 0.6 2.2 2 0 0 2 2 2 0 fzo-like conserved region Atg14 PF10186.4 gi|55379683|ref|YP_137533.1| - 0.22 10.4 10.5 1.1 8.0 2.6 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Flagellar_rod PF05149.7 gi|55379683|ref|YP_137533.1| - 0.25 10.5 17.7 0.11 11.7 6.1 2.1 2 0 0 2 2 2 0 Paraflagellar rod protein DUF3251 PF11622.3 gi|55379683|ref|YP_137533.1| - 0.25 10.7 9.5 0.35 10.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) Seryl_tRNA_N PF02403.17 gi|55379683|ref|YP_137533.1| - 0.27 11.2 18.0 0.48 10.4 1.7 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain bZIP_1 PF00170.16 gi|55379683|ref|YP_137533.1| - 0.28 11.1 14.6 0.2 11.6 1.0 2.5 2 1 0 2 2 2 0 bZIP transcription factor HrpB7 PF09486.5 gi|55379683|ref|YP_137533.1| - 0.28 11.0 13.8 1.8 8.4 3.4 2.3 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF2317 PF10079.4 gi|55379683|ref|YP_137533.1| - 0.31 9.6 13.9 0.45 9.0 4.4 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF3186 PF11382.3 gi|55379683|ref|YP_137533.1| - 0.33 10.0 9.2 0.39 9.7 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) LLC1 PF14945.1 gi|55379683|ref|YP_137533.1| - 0.36 11.1 6.3 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein FliD_C PF07195.7 gi|55379683|ref|YP_137533.1| - 0.36 10.0 17.7 0.35 10.1 7.6 2.2 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus TMF_TATA_bd PF12325.3 gi|55379683|ref|YP_137533.1| - 0.38 10.4 25.6 0.64 9.7 1.8 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF342 PF03961.8 gi|55379683|ref|YP_137533.1| - 0.39 9.0 15.8 1.1 7.5 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) CorA PF01544.13 gi|55379683|ref|YP_137533.1| - 0.4 9.6 11.0 0.79 8.7 1.9 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Hemerythrin PF01814.18 gi|55379683|ref|YP_137533.1| - 0.4 10.8 8.4 1.1 9.4 1.4 2.3 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Muted PF14942.1 gi|55379683|ref|YP_137533.1| - 0.42 10.4 14.2 1.3 8.9 4.8 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein CENP-H PF05837.7 gi|55379683|ref|YP_137533.1| - 0.47 10.6 15.1 2.4 8.3 0.1 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Baculo_PEP_C PF04513.7 gi|55379683|ref|YP_137533.1| - 0.53 10.0 11.3 0.5 10.1 0.6 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fmp27_WPPW PF10359.4 gi|55379683|ref|YP_137533.1| - 0.58 8.4 10.7 1.4 7.2 3.3 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain EMP24_GP25L PF01105.19 gi|55379683|ref|YP_137533.1| - 0.59 9.8 15.3 1.5 8.5 1.5 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Lzipper-MIP1 PF14389.1 gi|55379683|ref|YP_137533.1| - 0.7 10.0 17.5 0.34 11.0 3.9 2.5 2 1 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Lge1 PF11488.3 gi|55379683|ref|YP_137533.1| - 0.73 10.0 13.6 2.6e+02 1.9 9.3 2.8 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 DUF2570 PF10828.3 gi|55379683|ref|YP_137533.1| - 0.73 9.4 21.7 0.52 9.9 7.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) DUF3450 PF11932.3 gi|55379683|ref|YP_137533.1| - 0.73 9.0 20.7 1.5 8.0 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) FliD_N PF02465.13 gi|55379683|ref|YP_137533.1| - 0.77 10.1 0.0 0.77 10.1 0.0 2.9 1 1 0 2 2 1 0 Flagellar hook-associated protein 2 N-terminus Mod_r PF07200.8 gi|55379683|ref|YP_137533.1| - 0.84 9.5 20.3 2.7 7.9 8.0 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein ALIX_LYPXL_bnd PF13949.1 gi|55379683|ref|YP_137533.1| - 0.87 8.4 17.5 0.74 8.7 5.6 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Jnk-SapK_ap_N PF09744.4 gi|55379683|ref|YP_137533.1| - 1.2 9.0 18.2 1.7 8.6 6.4 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Mis14 PF08641.7 gi|55379683|ref|YP_137533.1| - 1.3 9.0 18.2 0.18 11.8 5.4 2.2 2 0 0 2 2 2 0 Kinetochore protein Mis14 like DUF2730 PF10805.3 gi|55379683|ref|YP_137533.1| - 1.3 8.7 13.0 2.4 7.9 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF2203 PF09969.4 gi|55379683|ref|YP_137533.1| - 1.4 9.1 11.8 3.4 7.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4140 PF13600.1 gi|55379683|ref|YP_137533.1| - 1.5 9.3 19.9 3.6 8.0 3.3 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) FlxA PF14282.1 gi|55379683|ref|YP_137533.1| - 1.5 8.8 30.3 1.9 8.4 1.5 2.3 2 0 0 2 2 2 0 FlxA-like protein ACCA PF03255.9 gi|55379683|ref|YP_137533.1| - 1.5 8.3 10.4 4.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Bap31 PF05529.7 gi|55379683|ref|YP_137533.1| - 1.6 8.1 14.4 1.8 7.9 0.8 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like DUF904 PF06005.7 gi|55379683|ref|YP_137533.1| - 1.6 9.0 24.9 2.9 8.2 8.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF904) Med4 PF10018.4 gi|55379683|ref|YP_137533.1| - 1.7 8.0 18.3 0.43 9.9 1.1 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 FH2 PF02181.18 gi|55379683|ref|YP_137533.1| - 1.7 7.4 10.2 3.1 6.5 0.4 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain DUF465 PF04325.8 gi|55379683|ref|YP_137533.1| - 1.7 8.3 21.5 0.83 9.4 1.5 3.7 2 2 2 4 4 4 0 Protein of unknown function (DUF465) bZIP_Maf PF03131.12 gi|55379683|ref|YP_137533.1| - 1.9 8.8 19.2 2.2 8.6 1.3 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor DAGK_cat PF00781.19 gi|55379683|ref|YP_137533.1| - 2.2 7.7 6.9 0.31 10.4 0.8 2.1 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain DUF812 PF05667.6 gi|55379683|ref|YP_137533.1| - 2.3 6.6 23.7 0.19 10.1 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Geminin PF07412.7 gi|55379683|ref|YP_137533.1| - 2.3 7.8 15.3 0.16 11.6 2.5 2.1 2 0 0 2 2 2 0 Geminin Nup54 PF13874.1 gi|55379683|ref|YP_137533.1| - 2.7 7.6 25.3 2.8 7.5 2.9 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 WXG100 PF06013.7 gi|55379683|ref|YP_137533.1| - 2.8 8.0 20.0 6.6 6.8 1.5 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG CDC37_N PF03234.9 gi|55379683|ref|YP_137533.1| - 2.9 8.1 17.8 8.8 6.6 12.3 1.7 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF607 PF04678.8 gi|55379683|ref|YP_137533.1| - 2.9 7.7 11.2 3.3 7.6 2.7 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF607 DUF3847 PF12958.2 gi|55379683|ref|YP_137533.1| - 3.1 7.6 20.6 0.46 10.2 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) ERM PF00769.14 gi|55379683|ref|YP_137533.1| - 3.6 7.0 27.5 0.7 9.3 1.6 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family FlaC_arch PF05377.6 gi|55379683|ref|YP_137533.1| - 3.7 7.5 20.0 2.3 8.1 2.8 3.5 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Val_tRNA-synt_C PF10458.4 gi|55379683|ref|YP_137533.1| - 4.3 7.4 10.4 4.4 7.4 0.8 2.6 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm ORF6C PF10552.4 gi|55379683|ref|YP_137533.1| - 4.4 7.0 17.1 0.11 12.2 1.0 2.6 2 1 0 2 2 2 0 ORF6C domain Hpt PF01627.18 gi|55379683|ref|YP_137533.1| - 4.7 7.2 14.1 1.6 8.7 0.2 3.0 2 1 1 3 3 3 0 Hpt domain Tnp_P_element PF12017.3 gi|55379683|ref|YP_137533.1| - 5 6.2 12.0 0.66 9.1 0.2 2.1 1 1 1 2 2 2 0 Transposase protein DUF641 PF04859.7 gi|55379683|ref|YP_137533.1| - 5.2 6.8 20.6 0.46 10.2 1.2 2.3 2 1 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF722 PF05263.6 gi|55379683|ref|YP_137533.1| - 5.2 7.2 11.7 2.6 8.1 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF722) PEP-utilisers_N PF05524.8 gi|55379683|ref|YP_137533.1| - 5.5 6.7 14.3 4.8 7.0 0.9 2.4 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF3584 PF12128.3 gi|55379683|ref|YP_137533.1| - 5.8 4.0 25.0 21 2.2 17.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Herpes_UL6 PF01763.11 gi|55379683|ref|YP_137533.1| - 6 4.9 11.0 12 3.9 0.1 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like DUF724 PF05266.9 gi|55379683|ref|YP_137533.1| - 6 6.4 21.0 3.1 7.3 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.6 gi|55379683|ref|YP_137533.1| - 6.2 6.0 9.7 4.8 6.3 2.2 2.1 1 1 0 2 2 2 0 Allexivirus 40kDa protein DUF2937 PF11157.3 gi|55379683|ref|YP_137533.1| - 6.4 6.0 9.1 8.5 5.6 3.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) AAA_23 PF13476.1 gi|55379683|ref|YP_137533.1| - 6.5 7.0 16.7 6.7 6.9 3.8 2.1 2 0 0 2 2 2 0 AAA domain TSC22 PF01166.13 gi|55379683|ref|YP_137533.1| - 7 6.6 22.8 1.5 8.8 7.3 2.6 2 1 0 2 2 2 0 TSC-22/dip/bun family Cauli_DNA-bind PF03310.8 gi|55379683|ref|YP_137533.1| - 7.8 6.3 10.2 3 7.7 1.4 2.3 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein Vps51 PF08700.6 gi|55379683|ref|YP_137533.1| - 8.4 6.3 15.5 0.73 9.7 0.8 3.3 3 1 1 4 4 3 0 Vps51/Vps67 DASH_Dam1 PF08653.5 gi|55379683|ref|YP_137533.1| - 8.5 6.2 8.8 35 4.2 0.2 3.1 2 1 0 2 2 2 0 DASH complex subunit Dam1 Retrotrans_gag PF03732.12 gi|55379683|ref|YP_137533.1| - 8.7 6.4 10.3 7.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Retrotransposon gag protein SRP54 PF00448.17 gi|55379684|ref|YP_137534.1| - 1.1e-68 230.6 0.2 1.5e-68 230.1 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|55379684|ref|YP_137534.1| - 6.4e-11 42.2 2.5 1.2e-10 41.3 0.4 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|55379684|ref|YP_137534.1| - 3.9e-06 26.0 0.1 6.7e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|55379684|ref|YP_137534.1| - 1.7e-05 24.5 0.0 3.7e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|55379684|ref|YP_137534.1| - 0.00013 21.4 0.6 0.00013 21.4 0.4 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|55379684|ref|YP_137534.1| - 0.00026 21.0 5.3 0.0069 16.3 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.1 gi|55379684|ref|YP_137534.1| - 0.0004 20.3 0.3 0.0023 17.9 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|55379684|ref|YP_137534.1| - 0.0007 19.2 1.0 0.0021 17.6 0.7 1.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|55379684|ref|YP_137534.1| - 0.00079 18.7 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|55379684|ref|YP_137534.1| - 0.00087 19.4 0.1 0.0027 17.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|55379684|ref|YP_137534.1| - 0.00089 18.6 0.1 0.0099 15.2 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase cobW PF02492.14 gi|55379684|ref|YP_137534.1| - 0.002 17.5 2.1 0.0027 17.1 0.2 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|55379684|ref|YP_137534.1| - 0.0024 17.7 0.0 0.027 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|55379684|ref|YP_137534.1| - 0.014 15.1 0.1 0.037 13.7 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|55379684|ref|YP_137534.1| - 0.017 14.0 0.3 0.03 13.3 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|55379684|ref|YP_137534.1| - 0.02 14.3 0.0 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|55379684|ref|YP_137534.1| - 0.022 15.5 1.3 0.055 14.2 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|55379684|ref|YP_137534.1| - 0.029 14.2 0.1 0.09 12.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|55379684|ref|YP_137534.1| - 0.034 12.9 0.0 0.059 12.1 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|55379684|ref|YP_137534.1| - 0.035 13.8 0.0 0.13 12.0 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|55379684|ref|YP_137534.1| - 0.036 14.2 0.1 0.17 12.1 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|55379684|ref|YP_137534.1| - 0.054 13.2 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 NTPase 6PF2K PF01591.13 gi|55379684|ref|YP_137534.1| - 0.064 12.3 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase ATP_bind_1 PF03029.12 gi|55379684|ref|YP_137534.1| - 0.077 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PPK2 PF03976.9 gi|55379684|ref|YP_137534.1| - 0.1 11.8 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) DAP3 PF10236.4 gi|55379684|ref|YP_137534.1| - 0.1 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.1 gi|55379684|ref|YP_137534.1| - 0.12 12.6 1.0 0.3 11.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain TATR PF03430.8 gi|55379684|ref|YP_137534.1| - 0.38 9.3 6.2 0.58 8.7 4.3 1.2 1 0 0 1 1 1 0 Trans-activating transcriptional regulator Peptidase_S64 PF08192.6 gi|55379684|ref|YP_137534.1| - 1 7.5 3.2 1.4 7.1 2.2 1.1 1 0 0 1 1 1 0 Peptidase family S64 TAT_signal PF10518.4 gi|55379685|ref|YP_137535.1| - 0.29 11.2 0.1 0.29 11.2 0.1 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Aldolase PF01081.14 gi|55379686|ref|YP_137536.1| - 1.7e-40 138.2 2.8 2.2e-40 137.9 2.0 1.1 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|55379686|ref|YP_137536.1| - 0.0002 20.4 5.4 0.2 10.5 0.1 3.0 2 1 1 3 3 3 2 Dihydroorotate dehydrogenase SspK PF08176.7 gi|55379686|ref|YP_137536.1| - 0.032 14.2 0.8 0.094 12.7 0.1 2.0 2 0 0 2 2 2 0 Small acid-soluble spore protein K family TIM-br_sig_trns PF09370.5 gi|55379686|ref|YP_137536.1| - 0.059 12.4 2.0 0.89 8.5 0.0 2.1 1 1 0 2 2 2 0 TIM-barrel signal transduction protein TrbC_Ftype PF09673.5 gi|55379686|ref|YP_137536.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TMP-TENI PF02581.12 gi|55379686|ref|YP_137536.1| - 0.18 10.9 2.1 1.4 7.9 0.0 2.7 2 2 0 2 2 2 0 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|55379686|ref|YP_137536.1| - 0.2 10.7 8.0 1.4 8.0 1.0 3.1 2 1 1 3 3 3 0 Nitronate monooxygenase KAR9 PF08580.5 gi|55379686|ref|YP_137536.1| - 7.3 4.7 9.4 9.5 4.3 6.5 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Mem_trans PF03547.13 gi|55379687|ref|YP_137537.1| - 9.1e-24 83.4 15.1 3.1e-14 52.0 0.4 2.0 1 1 1 2 2 2 2 Membrane transport protein YvrJ PF12841.2 gi|55379687|ref|YP_137537.1| - 0.056 12.7 0.1 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 YvrJ protein family TAT_signal PF10518.4 gi|55379688|ref|YP_137538.1| - 0.034 14.1 5.7 0.071 13.1 3.9 1.6 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|55379688|ref|YP_137538.1| - 0.043 12.9 1.8 0.084 12.0 1.3 1.6 1 1 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SRP54 PF00448.17 gi|55379689|ref|YP_137539.1| - 7.7e-60 201.6 0.1 1.2e-59 201.0 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|55379689|ref|YP_137539.1| - 2e-30 105.1 6.6 2e-30 105.1 4.6 2.9 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|55379689|ref|YP_137539.1| - 2.3e-14 53.2 0.3 7.3e-14 51.6 0.0 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|55379689|ref|YP_137539.1| - 6.3e-05 22.4 0.1 0.00021 20.7 0.1 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|55379689|ref|YP_137539.1| - 0.0012 18.3 2.9 0.0014 18.0 0.5 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|55379689|ref|YP_137539.1| - 0.0022 17.5 3.1 0.0041 16.6 2.2 1.6 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|55379689|ref|YP_137539.1| - 0.0025 17.5 0.0 0.0067 16.1 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|55379689|ref|YP_137539.1| - 0.0046 17.0 0.1 0.027 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|55379689|ref|YP_137539.1| - 0.0092 15.2 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ArsA_ATPase PF02374.10 gi|55379689|ref|YP_137539.1| - 0.01 14.9 6.9 0.14 11.1 0.0 3.1 2 1 1 3 3 3 0 Anion-transporting ATPase cobW PF02492.14 gi|55379689|ref|YP_137539.1| - 0.011 15.2 0.3 0.18 11.2 0.2 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CARD PF00619.16 gi|55379689|ref|YP_137539.1| - 0.015 15.0 1.6 0.08 12.7 0.1 2.5 2 0 0 2 2 2 0 Caspase recruitment domain SRPRB PF09439.5 gi|55379689|ref|YP_137539.1| - 0.032 13.4 0.0 5.6 6.1 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Zeta_toxin PF06414.7 gi|55379689|ref|YP_137539.1| - 0.079 12.0 0.1 0.54 9.3 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|55379689|ref|YP_137539.1| - 0.13 12.5 1.7 0.47 10.7 0.1 2.7 3 1 0 3 3 3 0 AAA domain Usp PF00582.21 gi|55379690|ref|YP_137540.1| - 6e-19 68.6 2.4 6.9e-19 68.4 1.7 1.1 1 0 0 1 1 1 1 Universal stress protein family HGTP_anticodon PF03129.15 gi|55379690|ref|YP_137540.1| - 0.051 13.5 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 Anticodon binding domain Thioredoxin PF00085.15 gi|55379691|ref|YP_137541.1| - 2.3e-11 43.2 0.0 4e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55379691|ref|YP_137541.1| - 0.00048 20.3 0.2 0.0094 16.1 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain GSP_synth PF03738.9 gi|55379691|ref|YP_137541.1| - 0.0022 18.1 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp HyaE PF07449.6 gi|55379691|ref|YP_137541.1| - 0.022 14.6 0.0 0.07 13.0 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE ABC_tran PF00005.22 gi|55379692|ref|YP_137542.1| - 2.3e-29 102.4 0.0 3.1e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55379692|ref|YP_137542.1| - 2.2e-09 37.7 0.0 1.1e-07 32.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|55379692|ref|YP_137542.1| - 7.8e-05 23.0 0.0 0.00011 22.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|55379692|ref|YP_137542.1| - 0.00021 21.1 0.1 0.0011 18.8 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|55379692|ref|YP_137542.1| - 0.0008 18.7 0.1 0.51 9.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|55379692|ref|YP_137542.1| - 0.0046 15.4 0.0 0.034 12.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|55379692|ref|YP_137542.1| - 0.014 14.8 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|55379692|ref|YP_137542.1| - 0.067 12.2 0.0 0.11 11.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|55379692|ref|YP_137542.1| - 0.089 12.9 0.1 2.9 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|55379693|ref|YP_137543.1| - 4.8e-28 98.1 0.0 6.2e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|55379693|ref|YP_137543.1| - 5.6e-13 48.2 0.2 1.1e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|55379693|ref|YP_137543.1| - 1.7e-06 28.2 0.8 0.0002 21.4 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55379693|ref|YP_137543.1| - 0.0001 21.7 0.0 0.0002 20.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55379693|ref|YP_137543.1| - 0.0019 17.4 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|55379693|ref|YP_137543.1| - 0.0046 16.9 0.0 0.024 14.6 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|55379693|ref|YP_137543.1| - 0.0069 17.1 0.1 0.035 14.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55379693|ref|YP_137543.1| - 0.0087 16.3 0.0 0.12 12.7 0.0 2.1 1 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|55379693|ref|YP_137543.1| - 0.013 15.4 0.4 0.055 13.4 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|55379693|ref|YP_137543.1| - 0.013 15.8 0.3 0.018 15.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|55379693|ref|YP_137543.1| - 0.019 15.0 0.1 0.069 13.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55379693|ref|YP_137543.1| - 0.025 14.0 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|55379693|ref|YP_137543.1| - 0.035 13.6 0.0 0.047 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55379693|ref|YP_137543.1| - 0.055 13.3 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|55379693|ref|YP_137543.1| - 0.14 12.3 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SMC_N PF02463.14 gi|55379693|ref|YP_137543.1| - 0.23 10.6 0.6 0.35 10.0 0.4 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.11 gi|55379694|ref|YP_137544.1| - 5.6e-34 117.3 37.8 8.4e-34 116.7 26.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55379695|ref|YP_137545.1| - 8.8e-24 83.8 15.6 1.1e-23 83.5 10.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|55379696|ref|YP_137546.1| - 1.6e-65 221.7 8.3 2e-65 221.3 5.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55379696|ref|YP_137546.1| - 9.1e-26 90.4 0.2 1.2e-25 90.0 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|55379696|ref|YP_137546.1| - 6.5e-10 38.3 1.2 1.3e-09 37.3 0.8 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|55379696|ref|YP_137546.1| - 0.00031 20.5 0.7 0.00097 18.9 0.5 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.1 gi|55379696|ref|YP_137546.1| - 0.0097 15.2 1.7 1.6 8.0 0.0 2.5 1 1 1 2 2 2 2 Periplasmic binding protein domain MgtE PF01769.11 gi|55379698|ref|YP_137548.1| - 7.6e-18 65.1 7.2 7.6e-18 65.1 5.0 1.5 2 0 0 2 2 2 1 Divalent cation transporter Claudin_2 PF13903.1 gi|55379698|ref|YP_137548.1| - 1.2 8.8 6.6 0.24 11.0 1.6 1.9 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MgtE PF01769.11 gi|55379699|ref|YP_137549.1| - 1.8e-18 67.1 12.6 2.8e-18 66.4 8.8 1.3 1 0 0 1 1 1 1 Divalent cation transporter DUF1422 PF07226.6 gi|55379699|ref|YP_137549.1| - 1.4 8.7 7.0 0.11 12.2 1.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) DUF4118 PF13493.1 gi|55379699|ref|YP_137549.1| - 3.5 7.8 18.1 8.5 6.6 4.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) Abi PF02517.11 gi|55379700|ref|YP_137550.1| - 0.21 11.7 2.2 0.69 10.0 1.5 1.9 1 0 0 1 1 1 0 CAAX protease self-immunity Acetyltransf_4 PF13420.1 gi|55379701|ref|YP_137551.1| - 2e-15 57.0 0.0 3.6e-15 56.2 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|55379701|ref|YP_137551.1| - 7.1e-10 38.7 0.0 1.2e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|55379701|ref|YP_137551.1| - 1.8e-07 31.2 0.0 3.4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55379701|ref|YP_137551.1| - 4.8e-06 26.6 0.0 8.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55379701|ref|YP_137551.1| - 4.5e-05 23.2 0.0 0.0001 22.0 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|55379701|ref|YP_137551.1| - 9.2e-05 22.6 0.0 0.00016 21.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55379701|ref|YP_137551.1| - 0.0014 18.4 0.0 0.004 17.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_27 PF13463.1 gi|55379701|ref|YP_137551.1| - 0.029 14.7 0.0 0.076 13.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.5 gi|55379701|ref|YP_137551.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Acetyltransf_6 PF13480.1 gi|55379701|ref|YP_137551.1| - 0.06 13.3 0.2 0.29 11.0 0.0 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.23 gi|55379702|ref|YP_137552.1| - 4.8e-27 93.4 6.6 3e-13 49.3 0.3 3.0 3 0 0 3 3 3 2 CBS domain MaoC_dehydratas PF01575.14 gi|55379702|ref|YP_137552.1| - 3.4e-22 78.1 0.0 6.5e-22 77.2 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|55379702|ref|YP_137552.1| - 1.9e-05 24.4 0.0 4.3e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|55379702|ref|YP_137552.1| - 0.0052 17.2 0.0 0.011 16.2 0.0 1.7 1 1 0 1 1 1 1 Thioesterase-like superfamily Peptidase_M23 PF01551.17 gi|55379702|ref|YP_137552.1| - 0.065 13.2 0.0 0.57 10.2 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M23 LTD PF00932.14 gi|55379703|ref|YP_137553.1| - 1.4e-19 70.2 6.6 1.4e-19 70.2 4.6 1.9 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.12 gi|55379703|ref|YP_137553.1| - 8.9e-18 64.5 0.0 1.6e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Oxidored_molyb PF00174.14 gi|55379704|ref|YP_137554.1| - 4.7e-30 104.2 0.1 7.3e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain HAD_2 PF13419.1 gi|55379706|ref|YP_137556.1| - 4.6e-24 85.5 0.4 5.4e-24 85.3 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|55379706|ref|YP_137556.1| - 1.2e-08 34.5 0.8 6.5e-07 28.9 0.0 2.4 2 1 0 2 2 2 2 HAD-hyrolase-like Hydrolase PF00702.21 gi|55379706|ref|YP_137556.1| - 4.1e-07 30.6 0.5 4e-06 27.4 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RNA_binding PF01877.12 gi|55379707|ref|YP_137557.1| - 1.7e-23 82.9 0.1 3.2e-23 82.0 0.0 1.5 1 1 0 1 1 1 1 RNA binding GPP34 PF05719.6 gi|55379707|ref|YP_137557.1| - 0.014 15.4 0.1 0.018 15.1 0.1 1.3 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) DUF3320 PF11784.3 gi|55379707|ref|YP_137557.1| - 0.03 13.8 0.1 0.073 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) AAA_18 PF13238.1 gi|55379708|ref|YP_137558.1| - 2e-16 60.4 0.0 2.5e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55379708|ref|YP_137558.1| - 4e-12 47.0 0.1 5.5e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55379708|ref|YP_137558.1| - 2e-07 31.0 0.0 3.3e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|55379708|ref|YP_137558.1| - 6.1e-05 22.9 0.0 7.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|55379708|ref|YP_137558.1| - 0.036 13.4 0.1 0.17 11.2 0.0 2.0 2 1 0 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.22 gi|55379708|ref|YP_137558.1| - 0.054 13.7 0.0 0.077 13.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter polyprenyl_synt PF00348.12 gi|55379709|ref|YP_137559.1| - 1e-55 188.4 0.0 1.2e-55 188.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF3786 PF12654.2 gi|55379709|ref|YP_137559.1| - 0.062 12.5 0.1 7.4 5.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3786) ETF_alpha PF00766.14 gi|55379710|ref|YP_137560.1| - 1.1e-36 124.2 0.7 4.2e-36 122.4 0.1 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|55379710|ref|YP_137560.1| - 6.6e-32 110.4 1.6 1.1e-31 109.8 1.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|55379711|ref|YP_137561.1| - 7e-36 123.4 5.7 7e-36 123.4 4.0 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain SBP_bac_8 PF13416.1 gi|55379711|ref|YP_137561.1| - 0.032 13.9 0.9 0.051 13.3 0.6 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein CoA_binding_2 PF13380.1 gi|55379711|ref|YP_137561.1| - 0.033 14.3 1.0 0.086 13.0 0.2 2.1 2 1 0 2 2 2 0 CoA binding domain SBP_bac_1 PF01547.20 gi|55379711|ref|YP_137561.1| - 0.039 13.6 1.0 0.064 12.9 0.7 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF1127 PF06568.6 gi|55379711|ref|YP_137561.1| - 0.17 11.2 0.1 0.17 11.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) HTH_IclR PF09339.5 gi|55379712|ref|YP_137562.1| - 0.009 15.5 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55379712|ref|YP_137562.1| - 0.027 13.8 0.1 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2782 PF11191.3 gi|55379712|ref|YP_137562.1| - 0.078 12.9 0.6 0.27 11.2 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2782) BiPBP_C PF06832.7 gi|55379713|ref|YP_137563.1| - 0.0033 17.3 0.2 0.015 15.2 0.1 2.2 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family SHOCT PF09851.4 gi|55379713|ref|YP_137563.1| - 0.12 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Short C-terminal domain BLOC1_2 PF10046.4 gi|55379713|ref|YP_137563.1| - 0.12 12.5 0.3 0.24 11.5 0.2 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|55379713|ref|YP_137563.1| - 0.18 10.8 1.2 0.29 10.1 0.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Methyltransf_11 PF08241.7 gi|55379714|ref|YP_137564.1| - 4.1e-25 88.0 0.0 6.9e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55379714|ref|YP_137564.1| - 1.5e-17 63.7 0.0 2.2e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55379714|ref|YP_137564.1| - 5.2e-17 61.8 0.0 6.6e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55379714|ref|YP_137564.1| - 3.5e-16 59.0 0.0 5.6e-14 51.8 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|55379714|ref|YP_137564.1| - 1.6e-15 57.3 0.0 2.7e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55379714|ref|YP_137564.1| - 1e-14 54.8 0.0 1.5e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55379714|ref|YP_137564.1| - 1.3e-12 48.2 0.0 2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55379714|ref|YP_137564.1| - 3e-10 40.1 0.0 1.6e-09 37.7 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|55379714|ref|YP_137564.1| - 9e-06 24.8 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|55379714|ref|YP_137564.1| - 2.2e-05 23.3 0.0 3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|55379714|ref|YP_137564.1| - 7.9e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|55379714|ref|YP_137564.1| - 8.1e-05 22.2 0.0 0.00011 21.8 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|55379714|ref|YP_137564.1| - 0.00041 19.5 0.0 0.00059 18.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|55379714|ref|YP_137564.1| - 0.0042 16.5 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|55379714|ref|YP_137564.1| - 0.0051 16.2 0.0 0.011 15.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|55379714|ref|YP_137564.1| - 0.021 13.1 0.0 0.024 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ATP-synt_B PF00430.13 gi|55379715|ref|YP_137565.1| - 1.3e-05 25.0 28.5 0.00017 21.3 19.7 2.0 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|55379715|ref|YP_137565.1| - 3.1e-05 24.1 22.4 7.5e-05 22.9 15.5 1.6 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF883 PF05957.8 gi|55379715|ref|YP_137565.1| - 0.002 18.4 17.3 0.1 13.0 3.0 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) HrpE PF06188.7 gi|55379715|ref|YP_137565.1| - 0.0052 16.5 16.1 0.011 15.4 11.2 1.5 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|55379715|ref|YP_137565.1| - 0.009 15.2 26.1 0.2 10.8 1.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DUF948 PF06103.6 gi|55379715|ref|YP_137565.1| - 0.037 13.8 2.0 0.07 12.9 0.2 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) OmpH PF03938.9 gi|55379715|ref|YP_137565.1| - 0.044 13.7 16.7 0.057 13.3 11.6 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) vATP-synt_E PF01991.13 gi|55379715|ref|YP_137565.1| - 0.16 11.1 25.2 3.2 6.9 17.5 2.1 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Remorin_C PF03763.8 gi|55379715|ref|YP_137565.1| - 0.37 10.3 17.7 0.3 10.6 4.1 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region DivIVA PF05103.8 gi|55379715|ref|YP_137565.1| - 0.44 10.5 18.8 2.8 8.0 7.9 2.1 1 1 1 2 2 2 0 DivIVA protein Muted PF14942.1 gi|55379715|ref|YP_137565.1| - 0.58 10.0 14.9 1.7 8.5 10.3 1.6 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Phasin PF05597.6 gi|55379715|ref|YP_137565.1| - 0.91 9.2 12.0 1.2 8.8 0.5 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Sds3 PF08598.6 gi|55379715|ref|YP_137565.1| - 0.97 8.9 15.2 1.8 8.0 10.5 1.4 1 1 0 1 1 1 0 Sds3-like Mitofilin PF09731.4 gi|55379715|ref|YP_137565.1| - 1.2 7.7 16.3 1.4 7.5 11.3 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein KfrA_N PF11740.3 gi|55379715|ref|YP_137565.1| - 2 8.8 32.9 1.6 9.2 10.1 2.4 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Apolipoprotein PF01442.13 gi|55379715|ref|YP_137565.1| - 2.5 7.5 16.7 15 5.0 11.6 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|55379715|ref|YP_137565.1| - 2.6 7.6 18.3 4.2 6.9 12.7 1.3 1 0 0 1 1 1 0 IncA protein DUF2422 PF10337.4 gi|55379715|ref|YP_137565.1| - 2.7 6.6 6.2 3 6.5 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) Med8 PF10232.4 gi|55379715|ref|YP_137565.1| - 3.3 7.1 13.0 4 6.8 9.0 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 YtxH PF12732.2 gi|55379715|ref|YP_137565.1| - 3.4 8.0 13.1 4.5e+02 1.3 9.1 2.6 1 1 0 1 1 1 0 YtxH-like protein rRNA_processing PF08524.6 gi|55379715|ref|YP_137565.1| - 5.1 6.8 11.8 6.7 6.4 8.2 1.3 1 0 0 1 1 1 0 rRNA processing Atg14 PF10186.4 gi|55379715|ref|YP_137565.1| - 5.7 5.7 10.1 7.2 5.4 7.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DDRGK PF09756.4 gi|55379715|ref|YP_137565.1| - 6.3 6.1 19.7 7.8 5.8 13.7 1.1 1 0 0 1 1 1 0 DDRGK domain CorA PF01544.13 gi|55379715|ref|YP_137565.1| - 6.6 5.6 12.1 8.2 5.3 8.4 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HAUS6_N PF14661.1 gi|55379715|ref|YP_137565.1| - 8 5.7 9.6 9.9 5.4 6.7 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Caudo_TAP PF02413.12 gi|55379715|ref|YP_137565.1| - 8.4 6.5 15.8 48 4.1 5.5 2.4 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein Hrs_helical PF12210.3 gi|55379715|ref|YP_137565.1| - 8.5 6.7 11.9 1.2 9.3 4.8 1.9 1 1 1 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate GBP_C PF02841.9 gi|55379715|ref|YP_137565.1| - 9 5.3 15.4 10 5.2 10.6 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DinB_2 PF12867.2 gi|55379715|ref|YP_137565.1| - 9.2 6.6 9.5 1.7e+02 2.5 6.6 2.5 1 1 0 1 1 1 0 DinB superfamily V_ATPase_I PF01496.14 gi|55379716|ref|YP_137566.1| - 3.4e-60 203.8 24.3 1.5e-28 99.1 3.6 4.4 3 2 0 3 3 3 3 V-type ATPase 116kDa subunit family UPF0184 PF03670.8 gi|55379716|ref|YP_137566.1| - 0.041 14.0 0.7 0.09 12.9 0.5 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) ATP-synt_C PF00137.16 gi|55379717|ref|YP_137567.1| - 7e-15 54.6 11.8 7e-15 54.6 8.2 1.6 2 0 0 2 2 2 1 ATP synthase subunit C TraT PF05818.7 gi|55379717|ref|YP_137567.1| - 3.3 7.0 5.1 3.8 6.8 3.5 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein vATP-synt_E PF01991.13 gi|55379718|ref|YP_137568.1| - 7.2e-41 139.6 8.2 9.6e-41 139.2 5.6 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|55379718|ref|YP_137568.1| - 0.01 15.5 5.7 0.017 14.9 4.0 1.4 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|55379718|ref|YP_137568.1| - 0.045 13.5 20.7 0.24 11.1 13.5 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Mt_ATP-synt_B PF05405.9 gi|55379718|ref|YP_137568.1| - 0.34 10.3 3.3 2 7.8 2.5 1.9 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) OmpH PF03938.9 gi|55379718|ref|YP_137568.1| - 1.5 8.7 9.2 2.1 8.2 6.4 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIVA PF05103.8 gi|55379718|ref|YP_137568.1| - 2.2 8.3 16.2 0.19 11.8 6.7 2.3 2 1 1 3 3 3 0 DivIVA protein DUF59 PF01883.14 gi|55379718|ref|YP_137568.1| - 4.1 7.4 7.0 39 4.3 0.0 3.6 3 1 1 4 4 4 0 Domain of unknown function DUF59 vATP-synt_AC39 PF01992.11 gi|55379719|ref|YP_137569.1| - 3.1e-96 322.4 1.6 3.5e-96 322.2 1.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|55379719|ref|YP_137569.1| - 0.0076 16.5 2.0 0.03 14.6 0.2 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF3209) ATP-synt_F PF01990.12 gi|55379720|ref|YP_137570.1| - 2.4e-19 69.5 0.0 3e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|55379721|ref|YP_137571.1| - 6.4e-94 313.4 0.0 8.9e-94 312.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|55379721|ref|YP_137571.1| - 6.5e-17 62.0 0.3 1.1e-16 61.3 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|55379721|ref|YP_137571.1| - 8.9e-13 48.2 3.6 3.9e-12 46.1 2.5 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|55379721|ref|YP_137571.1| - 0.0089 16.0 0.2 2.5 8.2 0.0 2.7 3 0 0 3 3 3 1 Peptidase family M23 QRPTase_N PF02749.11 gi|55379721|ref|YP_137571.1| - 0.09 12.6 0.1 26 4.7 0.0 2.8 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain AAA_22 PF13401.1 gi|55379721|ref|YP_137571.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|55379721|ref|YP_137571.1| - 1.2 8.9 4.8 3.2 7.5 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|55379722|ref|YP_137572.1| - 5.8e-60 202.4 0.0 7.8e-60 202.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|55379722|ref|YP_137572.1| - 4.7e-17 62.4 0.4 9.2e-17 61.5 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|55379722|ref|YP_137572.1| - 9.7e-15 54.5 0.4 2.6e-14 53.1 0.3 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|55379722|ref|YP_137572.1| - 5.4e-05 23.0 0.5 0.00016 21.5 0.3 1.9 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.13 gi|55379723|ref|YP_137573.1| - 2e-73 246.4 19.4 2.3e-73 246.1 13.5 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein SUR7 PF06687.7 gi|55379723|ref|YP_137573.1| - 0.42 10.1 5.1 4 6.9 3.7 2.3 1 1 1 2 2 2 0 SUR7/PalI family DUF4149 PF13664.1 gi|55379723|ref|YP_137573.1| - 1 9.4 8.3 3.3 7.8 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF3382 PF11862.3 gi|55379723|ref|YP_137573.1| - 2.3 8.1 7.3 0.63 9.9 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3382) DUF2157 PF09925.4 gi|55379723|ref|YP_137573.1| - 5.2 6.6 18.7 0.18 11.3 4.0 2.5 1 1 2 3 3 3 0 Predicted membrane protein (DUF2157) DUF4131 PF13567.1 gi|55379723|ref|YP_137573.1| - 5.2 6.4 15.3 1.6 8.1 3.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ATP-synt_D PF01813.12 gi|55379724|ref|YP_137574.1| - 1.9e-61 207.0 11.2 2.2e-61 206.8 7.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit D RICH PF05062.7 gi|55379724|ref|YP_137574.1| - 1.3 9.2 8.5 3.3 7.8 5.0 2.4 2 1 0 2 2 2 0 RICH domain DUF572 PF04502.8 gi|55379724|ref|YP_137574.1| - 7.3 5.7 18.2 2.6 7.1 11.2 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF572) DUF1272 PF06906.6 gi|55379725|ref|YP_137575.1| - 0.23 11.3 1.0 0.34 10.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-IS66 PF13005.2 gi|55379725|ref|YP_137575.1| - 0.4 10.6 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-dskA_traR PF01258.12 gi|55379725|ref|YP_137575.1| - 4 7.2 5.9 5.4 6.8 0.1 3.1 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger eRF1_2 PF03464.10 gi|55379726|ref|YP_137576.1| - 1.5e-37 128.8 0.0 3.9e-37 127.5 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|55379726|ref|YP_137576.1| - 9.6e-29 99.9 0.3 2.6e-28 98.5 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|55379726|ref|YP_137576.1| - 3.5e-24 84.8 0.0 5.6e-24 84.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Tir_receptor_M PF03549.9 gi|55379726|ref|YP_137576.1| - 0.11 12.6 0.1 2.2 8.4 0.0 2.8 2 1 1 3 3 3 0 Translocated intimin receptor (Tir) intimin-binding domain CbiA PF01656.18 gi|55379728|ref|YP_137578.1| - 4.4e-31 107.7 1.1 5.7e-31 107.4 0.8 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55379728|ref|YP_137578.1| - 4.3e-19 68.9 0.0 7.8e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|55379728|ref|YP_137578.1| - 2.8e-07 29.8 0.1 6.4e-07 28.7 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|55379728|ref|YP_137578.1| - 1.7e-06 27.4 0.2 0.0048 16.1 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|55379728|ref|YP_137578.1| - 2.3e-06 27.3 0.4 6.2e-06 26.0 0.3 1.8 1 1 1 2 2 2 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|55379728|ref|YP_137578.1| - 1.5e-05 24.1 1.3 6.2e-05 22.1 0.3 2.0 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|55379728|ref|YP_137578.1| - 2.2e-05 24.1 2.0 0.00013 21.6 0.1 2.7 2 1 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|55379728|ref|YP_137578.1| - 0.00013 21.3 0.2 0.00062 19.2 0.1 1.8 1 1 0 1 1 1 1 YhjQ protein SRP54 PF00448.17 gi|55379728|ref|YP_137578.1| - 0.00013 21.4 1.2 0.013 15.0 0.1 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|55379728|ref|YP_137578.1| - 0.0049 16.5 0.2 0.077 12.6 0.1 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|55379728|ref|YP_137578.1| - 0.019 14.3 2.0 0.048 13.0 0.8 2.0 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|55379728|ref|YP_137578.1| - 0.033 13.2 0.7 0.14 11.1 0.2 1.9 2 0 0 2 2 2 0 VirC1 protein ArgK PF03308.11 gi|55379728|ref|YP_137578.1| - 0.038 12.7 2.9 2 7.0 0.1 2.1 2 0 0 2 2 2 0 ArgK protein AAA_24 PF13479.1 gi|55379728|ref|YP_137578.1| - 0.046 13.3 0.1 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55379728|ref|YP_137578.1| - 0.079 13.7 0.1 0.45 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|55379728|ref|YP_137578.1| - 0.19 10.8 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HTH_10 PF04967.7 gi|55379729|ref|YP_137579.1| - 7.5e-20 70.2 0.2 1.2e-19 69.5 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.22 gi|55379729|ref|YP_137579.1| - 0.075 12.7 1.3 0.67 9.7 0.9 2.3 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|55379729|ref|YP_137579.1| - 0.081 12.5 1.2 0.26 10.8 0.1 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|55379729|ref|YP_137579.1| - 0.089 12.3 0.3 0.26 10.8 0.2 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fibrinogen_BP PF08017.6 gi|55379729|ref|YP_137579.1| - 0.12 10.6 0.0 0.16 10.1 0.0 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein Abhydrolase_6 PF12697.2 gi|55379730|ref|YP_137580.1| - 1.9e-29 103.1 6.6 2.2e-29 102.9 4.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|55379730|ref|YP_137580.1| - 5.5e-17 61.8 0.0 8.9e-17 61.1 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55379730|ref|YP_137580.1| - 1.1e-08 34.9 0.2 6.1e-08 32.5 0.1 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_8 PF06259.7 gi|55379730|ref|YP_137580.1| - 0.001 18.6 0.1 0.0015 18.0 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Thioesterase PF00975.15 gi|55379730|ref|YP_137580.1| - 0.0053 17.0 0.1 0.0092 16.2 0.1 1.5 1 0 0 1 1 1 1 Thioesterase domain DUF2974 PF11187.3 gi|55379730|ref|YP_137580.1| - 0.066 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PAF-AH_p_II PF03403.8 gi|55379730|ref|YP_137580.1| - 0.15 10.2 0.0 0.21 9.8 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II tRNA-synt_1d PF00750.14 gi|55379731|ref|YP_137581.1| - 6.9e-57 192.8 0.0 9.1e-57 192.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|55379731|ref|YP_137581.1| - 6.8e-35 119.6 0.0 2.3e-34 117.8 0.0 2.0 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|55379731|ref|YP_137581.1| - 5.6e-10 39.6 0.0 1.5e-09 38.2 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|55379731|ref|YP_137581.1| - 0.008 14.8 0.0 0.048 12.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|55379731|ref|YP_137581.1| - 0.043 12.9 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Jag_N PF14804.1 gi|55379731|ref|YP_137581.1| - 2 8.4 4.5 1 9.3 0.2 2.7 3 0 0 3 3 3 0 Jag N-terminus Peptidase_M50 PF02163.17 gi|55379732|ref|YP_137582.1| - 1e-24 86.5 0.0 2.2e-24 85.4 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|55379732|ref|YP_137582.1| - 1e-21 76.5 3.5 3.9e-08 33.0 0.2 3.6 2 1 2 4 4 4 3 PDZ domain Tricorn_PDZ PF14685.1 gi|55379732|ref|YP_137582.1| - 4.8e-11 42.2 4.4 2.3e-06 27.3 0.5 3.5 3 0 0 3 3 3 3 Tricorn protease PDZ domain PDZ PF00595.19 gi|55379732|ref|YP_137582.1| - 1.8e-09 37.6 5.6 3.1e-07 30.4 0.4 3.3 3 1 1 4 4 4 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|55379732|ref|YP_137582.1| - 0.022 14.6 0.0 3.4 7.6 0.0 3.0 3 0 0 3 3 3 0 PDZ-like domain Usp PF00582.21 gi|55379733|ref|YP_137583.1| - 3.6e-56 189.2 9.2 8.5e-31 107.0 1.3 2.1 2 0 0 2 2 2 2 Universal stress protein family SnoaL PF07366.7 gi|55379733|ref|YP_137583.1| - 0.054 13.0 0.1 0.1 12.1 0.1 1.5 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase DUF2984 PF11203.3 gi|55379733|ref|YP_137583.1| - 5.7 7.1 8.4 0.84 9.7 1.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2984) Endonuclease_7 PF02945.10 gi|55379734|ref|YP_137584.1| - 0.0053 16.4 0.7 0.0056 16.3 0.5 1.1 1 0 0 1 1 1 1 Recombination endonuclease VII DUF4428 PF14471.1 gi|55379734|ref|YP_137584.1| - 0.012 15.3 1.5 0.044 13.5 1.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) C1_3 PF07649.7 gi|55379734|ref|YP_137584.1| - 0.88 9.6 3.7 14 5.7 0.1 2.4 2 0 0 2 2 2 0 C1-like domain tRNA-synt_1f PF01921.13 gi|55379735|ref|YP_137585.1| - 2e-103 345.8 0.0 3.1e-103 345.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|55379735|ref|YP_137585.1| - 4.3e-08 32.2 0.0 1.2e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|55379735|ref|YP_137585.1| - 0.0012 18.0 0.0 0.011 14.8 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|55379735|ref|YP_137585.1| - 0.067 12.3 0.0 2.1 7.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Glyco_trans_4_4 PF13579.1 gi|55379735|ref|YP_137585.1| - 0.075 13.1 0.7 0.26 11.4 0.5 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain AA_kinase PF00696.23 gi|55379736|ref|YP_137586.1| - 5.6e-31 107.9 2.7 6.8e-31 107.6 1.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family Peptidase_M50 PF02163.17 gi|55379738|ref|YP_137588.1| - 4.4e-18 64.9 2.5 1.4e-16 60.0 1.7 2.3 1 1 0 1 1 1 1 Peptidase family M50 AIRS PF00586.19 gi|55379739|ref|YP_137589.1| - 9.5e-17 61.0 4.3 9.5e-17 61.0 3.0 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|55379739|ref|YP_137589.1| - 1.1e-10 41.7 0.0 1.8e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain UPF0104 PF03706.8 gi|55379740|ref|YP_137590.1| - 5.1e-32 111.3 37.1 7.1e-32 110.8 25.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) HHH_5 PF14520.1 gi|55379740|ref|YP_137590.1| - 0.11 12.7 1.4 0.41 10.8 0.5 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S19e PF01090.14 gi|55379741|ref|YP_137591.1| - 6.7e-50 168.1 0.0 7.5e-50 167.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e MarR_2 PF12802.2 gi|55379741|ref|YP_137591.1| - 0.0077 15.8 0.3 0.072 12.7 0.0 2.5 3 0 0 3 3 3 1 MarR family GntR PF00392.16 gi|55379741|ref|YP_137591.1| - 0.0093 15.3 0.0 0.14 11.6 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family dsDNA_bind PF01984.15 gi|55379742|ref|YP_137592.1| - 3.9e-28 97.5 12.3 4.6e-28 97.3 8.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DASH_Spc34 PF08657.5 gi|55379742|ref|YP_137592.1| - 0.054 13.1 2.7 0.063 12.9 1.9 1.0 1 0 0 1 1 1 0 DASH complex subunit Spc34 Myosin_tail_1 PF01576.14 gi|55379742|ref|YP_137592.1| - 0.091 10.4 13.7 0.12 10.1 9.5 1.1 1 0 0 1 1 1 0 Myosin tail cwf18 PF08315.7 gi|55379742|ref|YP_137592.1| - 0.4 11.1 7.0 0.48 10.8 4.9 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor Caps_synth_GfcC PF06251.6 gi|55379742|ref|YP_137592.1| - 0.65 9.1 5.8 0.96 8.5 4.1 1.4 1 1 0 1 1 1 0 Capsule biosynthesis GfcC DUF883 PF05957.8 gi|55379742|ref|YP_137592.1| - 1.6 9.1 6.3 1.1 9.6 1.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) APC_CDC26 PF10471.4 gi|55379742|ref|YP_137592.1| - 2 9.2 11.9 21 5.9 0.1 2.2 1 1 1 2 2 2 0 Anaphase-promoting complex APC subunit 1 Peptidase_C58 PF03543.9 gi|55379742|ref|YP_137592.1| - 3 7.2 7.6 3.7 6.9 5.2 1.1 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen Asn_synthase PF00733.16 gi|55379743|ref|YP_137593.1| - 0.0098 15.4 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|55379743|ref|YP_137593.1| - 0.031 13.3 0.1 1.4 7.9 0.0 2.1 1 1 1 2 2 2 0 Arginosuccinate synthase QueC PF06508.8 gi|55379743|ref|YP_137593.1| - 0.088 12.0 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|55379743|ref|YP_137593.1| - 0.1 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region KaiC PF06745.8 gi|55379744|ref|YP_137594.1| - 1.2e-11 44.1 0.0 2.2e-06 26.9 0.0 2.0 1 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|55379744|ref|YP_137594.1| - 0.00048 19.5 0.2 0.031 13.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|55379744|ref|YP_137594.1| - 0.082 11.7 0.0 0.17 10.6 0.0 1.5 2 0 0 2 2 2 0 PAXNEB protein tRNA-synt_His PF13393.1 gi|55379745|ref|YP_137595.1| - 1e-56 192.2 0.0 1.4e-56 191.8 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|55379745|ref|YP_137595.1| - 1.4e-22 80.0 0.0 2.6e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|55379745|ref|YP_137595.1| - 1.1e-11 44.5 0.0 2.5e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain NAD_binding_10 PF13460.1 gi|55379745|ref|YP_137595.1| - 0.071 13.1 1.0 0.62 10.0 0.1 2.6 3 0 0 3 3 3 0 NADH(P)-binding LTV PF04180.9 gi|55379745|ref|YP_137595.1| - 0.18 11.3 2.5 0.27 10.6 1.7 1.2 1 0 0 1 1 1 0 Low temperature viability protein SHOCT PF09851.4 gi|55379746|ref|YP_137596.1| - 5.3e-10 38.4 0.1 7.6e-10 37.9 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|55379746|ref|YP_137596.1| - 4.1e-05 23.2 0.4 8.4e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) JSRP PF15312.1 gi|55379746|ref|YP_137596.1| - 0.046 13.6 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Junctional sarcoplasmic reticulum protein GvpG PF05120.7 gi|55379746|ref|YP_137596.1| - 0.051 13.3 0.8 0.071 12.9 0.5 1.3 1 0 0 1 1 1 0 Gas vesicle protein G XPA_N PF01286.13 gi|55379747|ref|YP_137597.1| - 0.0019 17.8 0.9 0.76 9.5 0.0 2.3 2 0 0 2 2 2 2 XPA protein N-terminal DNA_RNApol_7kD PF03604.8 gi|55379747|ref|YP_137597.1| - 0.063 12.7 0.3 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit LIM PF00412.17 gi|55379747|ref|YP_137597.1| - 0.08 13.0 0.2 0.18 11.9 0.2 1.7 1 1 0 1 1 1 0 LIM domain DUF35_N PF12172.3 gi|55379747|ref|YP_137597.1| - 0.091 12.6 0.2 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|55379747|ref|YP_137597.1| - 0.093 12.0 4.7 0.17 11.2 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding DZR PF12773.2 gi|55379747|ref|YP_137597.1| - 0.13 12.0 1.6 0.46 10.3 1.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon Med27 PF11571.3 gi|55379747|ref|YP_137597.1| - 0.14 12.2 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Mediator complex subunit 27 PhnA_Zn_Ribbon PF08274.7 gi|55379747|ref|YP_137597.1| - 0.37 10.6 2.7 1.9 8.3 0.2 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Nudix_N_2 PF14803.1 gi|55379747|ref|YP_137597.1| - 0.53 10.0 2.1 20 4.9 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|55379747|ref|YP_137597.1| - 0.63 9.3 3.8 5.4 6.3 2.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.9 gi|55379747|ref|YP_137597.1| - 1.2 8.8 4.1 18 5.1 2.8 2.4 1 1 0 1 1 1 0 Adenylate kinase, active site lid Acetyltransf_1 PF00583.19 gi|55379748|ref|YP_137598.1| - 2.2e-16 59.6 0.0 3.3e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|55379748|ref|YP_137598.1| - 2.6e-09 37.3 0.0 3.3e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55379748|ref|YP_137598.1| - 6.3e-09 35.8 0.0 9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55379748|ref|YP_137598.1| - 1.2e-08 35.0 0.0 1.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55379748|ref|YP_137598.1| - 1.7e-07 31.1 0.0 2.5e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|55379748|ref|YP_137598.1| - 2.3e-06 27.6 0.0 2.9e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55379748|ref|YP_137598.1| - 4.4e-06 26.3 0.0 7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|55379748|ref|YP_137598.1| - 0.00097 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|55379748|ref|YP_137598.1| - 0.0029 17.5 0.0 0.0039 17.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4222 PF13973.1 gi|55379748|ref|YP_137598.1| - 0.12 11.7 0.0 0.35 10.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) PseudoU_synth_1 PF01416.15 gi|55379749|ref|YP_137599.1| - 4.7e-24 84.8 0.0 7.8e-11 42.3 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.15 gi|55379750|ref|YP_137600.1| - 9.9e-69 232.5 1.8 9.9e-69 232.5 1.2 1.8 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|55379750|ref|YP_137600.1| - 5.1e-22 77.7 0.1 5.1e-22 77.7 0.1 3.1 5 0 0 5 5 5 1 Oligopeptidase F Peptidase_MA_2 PF13485.1 gi|55379750|ref|YP_137600.1| - 0.0083 16.1 1.2 0.0083 16.1 0.8 2.5 2 1 0 2 2 2 1 Peptidase MA superfamily Reprolysin_3 PF13582.1 gi|55379750|ref|YP_137600.1| - 0.094 13.2 4.9 0.31 11.5 0.1 2.8 3 0 0 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like AAA PF00004.24 gi|55379751|ref|YP_137601.1| - 2.9e-44 150.4 1.0 5.7e-44 149.5 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|55379751|ref|YP_137601.1| - 1.4e-08 34.8 0.0 3.5e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|55379751|ref|YP_137601.1| - 1.2e-07 31.0 0.4 5.2e-07 28.9 0.0 2.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|55379751|ref|YP_137601.1| - 4.5e-07 30.0 3.6 3.5e-05 23.8 0.2 3.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|55379751|ref|YP_137601.1| - 1.5e-06 27.9 2.0 4.2e-06 26.5 0.2 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|55379751|ref|YP_137601.1| - 1.5e-06 28.3 2.9 0.00012 22.2 0.1 3.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|55379751|ref|YP_137601.1| - 2.3e-06 28.4 0.3 1e-05 26.3 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|55379751|ref|YP_137601.1| - 0.00025 20.9 0.4 0.00079 19.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|55379751|ref|YP_137601.1| - 0.00026 20.8 0.0 0.00063 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|55379751|ref|YP_137601.1| - 0.00033 20.3 0.1 0.00087 19.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|55379751|ref|YP_137601.1| - 0.00035 19.4 0.0 0.00068 18.4 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|55379751|ref|YP_137601.1| - 0.00037 19.5 0.0 0.00072 18.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ApoO PF09769.4 gi|55379751|ref|YP_137601.1| - 0.00073 19.2 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 1 Apolipoprotein O NACHT PF05729.7 gi|55379751|ref|YP_137601.1| - 0.00083 19.0 0.2 0.022 14.4 0.0 2.4 1 1 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|55379751|ref|YP_137601.1| - 0.0014 18.0 0.0 0.0046 16.3 0.0 1.8 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|55379751|ref|YP_137601.1| - 0.0014 18.5 1.2 0.003 17.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|55379751|ref|YP_137601.1| - 0.0015 18.8 0.2 0.008 16.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Rootletin PF15035.1 gi|55379751|ref|YP_137601.1| - 0.0018 18.3 3.4 0.0045 16.9 2.3 1.6 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion Mg_chelatase PF01078.16 gi|55379751|ref|YP_137601.1| - 0.0022 17.2 0.0 0.0046 16.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|55379751|ref|YP_137601.1| - 0.0023 17.4 0.2 0.039 13.4 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|55379751|ref|YP_137601.1| - 0.0024 17.0 0.0 0.0051 15.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|55379751|ref|YP_137601.1| - 0.003 17.2 0.4 0.11 12.1 0.1 2.9 2 1 0 2 2 2 1 NTPase AAA_3 PF07726.6 gi|55379751|ref|YP_137601.1| - 0.011 15.3 0.0 0.025 14.1 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) bZIP_1 PF00170.16 gi|55379751|ref|YP_137601.1| - 0.021 14.7 4.4 0.47 10.4 0.2 2.5 1 1 1 2 2 2 0 bZIP transcription factor NB-ARC PF00931.17 gi|55379751|ref|YP_137601.1| - 0.023 13.5 0.0 0.05 12.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|55379751|ref|YP_137601.1| - 0.026 14.5 0.0 0.077 13.0 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|55379751|ref|YP_137601.1| - 0.027 14.7 0.9 7.1 6.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|55379751|ref|YP_137601.1| - 0.031 14.4 0.0 0.065 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase CPT PF07931.7 gi|55379751|ref|YP_137601.1| - 0.032 13.8 0.0 0.074 12.6 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein KaiC PF06745.8 gi|55379751|ref|YP_137601.1| - 0.036 13.1 0.3 0.45 9.5 0.0 2.4 1 1 1 2 2 2 0 KaiC DUF904 PF06005.7 gi|55379751|ref|YP_137601.1| - 0.038 14.2 4.4 0.059 13.6 2.1 2.1 2 0 0 2 2 1 0 Protein of unknown function (DUF904) Torsin PF06309.6 gi|55379751|ref|YP_137601.1| - 0.039 13.8 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 Torsin GAS PF13851.1 gi|55379751|ref|YP_137601.1| - 0.043 13.0 2.8 0.049 12.8 1.1 1.7 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding AAA_25 PF13481.1 gi|55379751|ref|YP_137601.1| - 0.045 13.1 5.5 0.23 10.8 0.1 3.1 2 1 1 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|55379751|ref|YP_137601.1| - 0.048 13.2 0.1 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|55379751|ref|YP_137601.1| - 0.05 13.8 0.5 0.22 11.7 0.0 2.3 3 1 0 3 3 2 0 ABC transporter BLOC1_2 PF10046.4 gi|55379751|ref|YP_137601.1| - 0.077 13.1 0.7 0.26 11.4 0.5 1.9 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|55379751|ref|YP_137601.1| - 0.11 12.2 1.0 0.33 10.7 0.6 1.9 2 0 0 2 2 1 0 Laminin Domain II Nsp1_C PF05064.8 gi|55379751|ref|YP_137601.1| - 0.13 11.9 4.3 0.3 10.7 1.8 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Parvo_NS1 PF01057.12 gi|55379751|ref|YP_137601.1| - 0.15 10.9 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2203 PF09969.4 gi|55379751|ref|YP_137601.1| - 0.27 11.4 1.9 0.5 10.6 0.7 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) APG6 PF04111.7 gi|55379751|ref|YP_137601.1| - 0.29 10.1 2.9 0.54 9.2 2.0 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|55379751|ref|YP_137601.1| - 0.31 8.8 0.9 0.45 8.3 0.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TSC22 PF01166.13 gi|55379751|ref|YP_137601.1| - 0.35 10.8 7.2 0.26 11.2 0.5 3.3 2 1 1 3 3 2 0 TSC-22/dip/bun family bZIP_2 PF07716.10 gi|55379751|ref|YP_137601.1| - 0.54 10.1 3.7 0.29 10.9 0.3 2.2 1 1 1 2 2 2 0 Basic region leucine zipper IncA PF04156.9 gi|55379751|ref|YP_137601.1| - 0.57 9.7 3.5 0.45 10.0 1.3 1.7 2 0 0 2 2 1 0 IncA protein DUF972 PF06156.8 gi|55379751|ref|YP_137601.1| - 0.96 9.8 4.2 1.5 9.1 2.0 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|55379751|ref|YP_137601.1| - 1.3 8.5 4.9 0.99 8.9 1.9 1.9 2 0 0 2 2 1 0 Septum formation initiator DeoRC PF00455.17 gi|55379752|ref|YP_137602.1| - 9.6e-43 145.6 0.0 1.4e-42 145.1 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|55379752|ref|YP_137602.1| - 2.6e-19 68.5 0.1 4.3e-19 67.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|55379752|ref|YP_137602.1| - 6.3e-09 35.3 0.2 1.4e-08 34.2 0.2 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|55379752|ref|YP_137602.1| - 6.8e-08 31.8 0.2 1.6e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|55379752|ref|YP_137602.1| - 5.2e-07 29.2 0.0 1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55379752|ref|YP_137602.1| - 1e-05 25.2 0.3 0.00012 21.8 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|55379752|ref|YP_137602.1| - 1.8e-05 24.3 0.0 0.00012 21.7 0.0 2.3 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379752|ref|YP_137602.1| - 6.6e-05 22.5 0.2 0.00022 20.8 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.1 gi|55379752|ref|YP_137602.1| - 0.00014 21.2 0.1 0.00035 19.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|55379752|ref|YP_137602.1| - 0.00056 19.8 0.1 0.0013 18.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|55379752|ref|YP_137602.1| - 0.00085 19.6 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55379752|ref|YP_137602.1| - 0.001 18.5 0.0 0.0026 17.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|55379752|ref|YP_137602.1| - 0.0024 17.9 0.0 0.0048 16.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|55379752|ref|YP_137602.1| - 0.0024 17.5 0.0 0.0052 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|55379752|ref|YP_137602.1| - 0.006 16.1 0.2 0.026 14.1 0.0 2.2 3 0 0 3 3 1 1 Homeodomain-like domain Cullin PF00888.17 gi|55379752|ref|YP_137602.1| - 0.0063 15.1 0.0 0.018 13.6 0.0 1.6 2 0 0 2 2 2 1 Cullin family PaaX PF07848.7 gi|55379752|ref|YP_137602.1| - 0.008 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein Put_DNA-bind_N PF06971.8 gi|55379752|ref|YP_137602.1| - 0.0086 15.8 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus Sigma70_r4 PF04545.11 gi|55379752|ref|YP_137602.1| - 0.015 14.5 1.6 0.051 12.8 0.9 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 RP-C PF03428.8 gi|55379752|ref|YP_137602.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF977 PF06163.6 gi|55379752|ref|YP_137602.1| - 0.027 14.2 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_Crp_2 PF13545.1 gi|55379752|ref|YP_137602.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Mga PF05043.8 gi|55379752|ref|YP_137602.1| - 0.038 14.2 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain SpoIIID PF12116.3 gi|55379752|ref|YP_137602.1| - 0.04 13.8 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D Fe_dep_repress PF01325.14 gi|55379752|ref|YP_137602.1| - 0.043 13.7 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain PqqD PF05402.7 gi|55379752|ref|YP_137602.1| - 0.048 13.6 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 1 0 Coenzyme PQQ synthesis protein D (PqqD) TFIIE_alpha PF02002.12 gi|55379752|ref|YP_137602.1| - 0.068 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.6 gi|55379752|ref|YP_137602.1| - 0.07 13.5 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal HTH_29 PF13551.1 gi|55379752|ref|YP_137602.1| - 0.074 13.2 0.0 0.43 10.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|55379752|ref|YP_137602.1| - 0.084 12.8 0.1 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_10 PF04967.7 gi|55379752|ref|YP_137602.1| - 0.1 12.2 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|55379752|ref|YP_137602.1| - 0.16 12.0 0.2 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Transposase ABC_tran PF00005.22 gi|55379754|ref|YP_137604.1| - 1.8e-30 106.0 0.0 3.4e-30 105.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55379754|ref|YP_137604.1| - 2.5e-14 52.9 0.3 9.5e-14 51.1 0.0 2.1 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.12 gi|55379754|ref|YP_137604.1| - 1.3e-11 44.4 0.1 2.4e-07 30.7 0.1 3.1 2 1 0 2 2 2 2 TOBE domain AAA_21 PF13304.1 gi|55379754|ref|YP_137604.1| - 2.5e-10 40.7 0.0 2.3e-08 34.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55379754|ref|YP_137604.1| - 2.6e-05 23.5 0.1 8.5e-05 21.8 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55379754|ref|YP_137604.1| - 0.00049 20.1 0.2 0.0011 19.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|55379754|ref|YP_137604.1| - 0.0017 17.4 0.0 0.57 9.1 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|55379754|ref|YP_137604.1| - 0.0024 18.0 0.3 0.0048 17.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55379754|ref|YP_137604.1| - 0.0039 17.3 0.0 0.0094 16.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|55379754|ref|YP_137604.1| - 0.006 15.7 0.0 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|55379754|ref|YP_137604.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|55379754|ref|YP_137604.1| - 0.016 15.5 0.8 0.045 14.0 0.6 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|55379754|ref|YP_137604.1| - 0.016 13.9 0.2 0.048 12.3 0.0 1.6 1 1 1 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|55379754|ref|YP_137604.1| - 0.02 14.2 0.0 0.093 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|55379754|ref|YP_137604.1| - 0.022 14.6 0.3 0.043 13.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55379754|ref|YP_137604.1| - 0.024 15.4 0.6 0.063 14.1 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55379754|ref|YP_137604.1| - 0.029 13.8 0.0 0.049 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|55379754|ref|YP_137604.1| - 0.029 13.8 0.0 0.062 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|55379754|ref|YP_137604.1| - 0.029 14.6 0.0 0.064 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|55379754|ref|YP_137604.1| - 0.039 13.5 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|55379754|ref|YP_137604.1| - 0.05 13.4 0.2 0.12 12.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|55379754|ref|YP_137604.1| - 0.068 12.8 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|55379754|ref|YP_137604.1| - 0.071 13.6 0.0 1.4 9.4 0.0 2.6 3 0 0 3 3 3 0 Miro-like protein YukC PF10140.4 gi|55379754|ref|YP_137604.1| - 0.11 11.0 0.0 0.19 10.2 0.0 1.3 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC BPD_transp_1 PF00528.17 gi|55379755|ref|YP_137605.1| - 1.7e-24 86.3 12.7 1.7e-24 86.3 8.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55379756|ref|YP_137606.1| - 1.8e-17 63.4 15.4 1.8e-17 63.4 10.6 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|55379757|ref|YP_137607.1| - 3.3e-26 92.6 2.7 5.1e-26 92.0 1.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|55379757|ref|YP_137607.1| - 1.1e-17 64.7 3.1 1.1e-17 64.7 2.2 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55379757|ref|YP_137607.1| - 0.00097 18.9 2.2 0.0024 17.7 1.5 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PQQ_3 PF13570.1 gi|55379758|ref|YP_137608.1| - 9.1e-50 165.6 37.2 1.6e-10 40.9 0.1 8.1 8 0 0 8 8 8 6 PQQ-like domain PQQ_2 PF13360.1 gi|55379758|ref|YP_137608.1| - 5.6e-43 147.1 15.3 3.6e-19 69.1 0.9 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|55379758|ref|YP_137608.1| - 5.5e-39 129.8 13.6 5e-08 32.0 0.1 7.7 7 0 0 7 7 7 6 PQQ enzyme repeat TruB_C PF09142.6 gi|55379758|ref|YP_137608.1| - 5 6.8 9.5 1.4 8.6 0.2 3.9 4 2 0 4 4 4 0 tRNA Pseudouridine synthase II, C terminal PvlArgDC PF01862.11 gi|55379759|ref|YP_137609.1| - 5.4e-24 84.6 0.0 6.6e-24 84.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF4232 PF14016.1 gi|55379759|ref|YP_137609.1| - 0.0014 18.2 0.6 0.0027 17.3 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4232) Gram_pos_anchor PF00746.16 gi|55379761|ref|YP_137611.1| - 1.2 9.0 6.0 6.3 6.7 0.0 2.3 1 1 1 2 2 2 0 Gram positive anchor IncA PF04156.9 gi|55379761|ref|YP_137611.1| - 3.7 7.0 4.8 3.7 7.1 3.3 1.0 1 0 0 1 1 1 0 IncA protein TAT_signal PF10518.4 gi|55379762|ref|YP_137612.1| - 0.069 13.1 1.0 0.15 12.1 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GTP_EFTU PF00009.22 gi|55379763|ref|YP_137613.1| - 1e-30 106.5 0.0 1.3e-29 102.9 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|55379763|ref|YP_137613.1| - 1.8e-23 82.4 1.2 5.9e-23 80.8 0.9 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|55379763|ref|YP_137613.1| - 8.7e-14 51.3 4.7 6e-09 35.8 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|55379763|ref|YP_137613.1| - 7.3e-13 47.9 0.0 3e-12 45.9 0.0 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|55379763|ref|YP_137613.1| - 1.2e-06 28.4 0.0 4e-06 26.7 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|55379763|ref|YP_137613.1| - 0.00032 20.3 0.0 0.0011 18.5 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|55379763|ref|YP_137613.1| - 0.00044 20.7 0.0 0.0014 19.0 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|55379763|ref|YP_137613.1| - 0.0011 18.7 0.3 0.14 11.9 0.1 2.7 2 0 0 2 2 2 1 Dynamin family MobB PF03205.9 gi|55379763|ref|YP_137613.1| - 0.066 12.9 0.1 0.21 11.2 0.1 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Copper-bind PF00127.15 gi|55379764|ref|YP_137614.1| - 2.3e-16 59.8 0.0 4.1e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|55379764|ref|YP_137614.1| - 0.0032 17.3 0.1 0.011 15.5 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain PT-VENN PF04829.8 gi|55379764|ref|YP_137614.1| - 0.049 13.1 2.0 0.11 12.1 1.4 1.6 1 1 0 1 1 1 0 Pre-toxin domain with VENN motif TAT_signal PF10518.4 gi|55379764|ref|YP_137614.1| - 0.2 11.7 0.6 0.2 11.7 0.4 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PRC PF05239.11 gi|55379765|ref|YP_137615.1| - 2.3e-11 43.3 0.0 2.5e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF4411 PF14367.1 gi|55379766|ref|YP_137616.1| - 0.0013 18.4 0.2 0.34 10.5 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4411) zf-C3HC4_3 PF13920.1 gi|55379766|ref|YP_137616.1| - 0.0068 16.0 0.4 0.01 15.5 0.3 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.9 gi|55379766|ref|YP_137616.1| - 0.0079 15.6 2.5 0.11 11.9 0.2 3.0 2 1 1 3 3 3 1 Rad50 zinc hook motif DZR PF12773.2 gi|55379766|ref|YP_137616.1| - 0.0082 15.9 1.0 0.014 15.1 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0278 PF08745.6 gi|55379766|ref|YP_137616.1| - 0.012 14.8 0.5 0.031 13.5 0.2 1.7 1 1 1 2 2 2 0 UPF0278 family PIN PF01850.16 gi|55379766|ref|YP_137616.1| - 0.014 15.7 2.6 0.21 11.9 1.8 2.1 1 1 0 1 1 1 0 PIN domain NOB1_Zn_bind PF08772.6 gi|55379766|ref|YP_137616.1| - 0.024 14.4 0.4 0.046 13.5 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Mut7-C PF01927.11 gi|55379766|ref|YP_137616.1| - 0.039 13.9 0.1 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C2H2 PF00096.21 gi|55379766|ref|YP_137616.1| - 0.042 14.1 1.9 5.1 7.6 0.1 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|55379766|ref|YP_137616.1| - 0.055 13.2 0.7 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|55379766|ref|YP_137616.1| - 0.058 13.0 1.1 0.14 11.8 0.8 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|55379766|ref|YP_137616.1| - 0.08 12.6 3.0 0.28 10.9 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|55379766|ref|YP_137616.1| - 0.084 12.8 3.9 1.3 8.9 2.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC_2 PF13913.1 gi|55379766|ref|YP_137616.1| - 0.38 10.4 7.6 0.15 11.7 2.0 2.2 1 1 1 2 2 2 0 zinc-finger of a C2HC-type RHH_1 PF01402.16 gi|55379767|ref|YP_137617.1| - 1.5e-05 24.6 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RepB-RCR_reg PF10723.4 gi|55379767|ref|YP_137617.1| - 0.0023 17.6 0.0 0.0025 17.5 0.0 1.1 1 0 0 1 1 1 1 Replication regulatory protein RepB IF2_N PF04760.10 gi|55379767|ref|YP_137617.1| - 0.016 14.8 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_AsnC-type PF13404.1 gi|55379767|ref|YP_137617.1| - 0.12 11.9 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Abi PF02517.11 gi|55379768|ref|YP_137618.1| - 1.4e-15 57.1 2.4 1.4e-15 57.1 1.6 3.5 2 1 0 2 2 2 1 CAAX protease self-immunity PGI PF00342.14 gi|55379769|ref|YP_137619.1| - 6.4e-51 173.2 0.0 9.6e-51 172.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucose isomerase DUF4199 PF13858.1 gi|55379770|ref|YP_137620.1| - 8 6.3 8.8 0.26 11.2 1.4 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) TatD_DNase PF01026.16 gi|55379771|ref|YP_137621.1| - 0.057 12.6 0.1 0.082 12.0 0.1 1.3 1 0 0 1 1 1 0 TatD related DNase SecD_SecF PF02355.11 gi|55379773|ref|YP_137623.1| - 2.1e-30 105.3 11.7 3.1e-30 104.7 8.1 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|55379773|ref|YP_137623.1| - 2e-05 23.5 0.0 4.8e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Clc-like PF07062.7 gi|55379773|ref|YP_137623.1| - 0.0092 15.2 0.6 0.024 13.9 0.1 1.8 1 1 1 2 2 2 1 Clc-like DUF3040 PF11239.3 gi|55379773|ref|YP_137623.1| - 1.6 8.7 20.2 16 5.6 0.0 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3040) Patched PF02460.13 gi|55379773|ref|YP_137623.1| - 1.7 6.4 13.3 2.3 6.0 9.2 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|55379774|ref|YP_137624.1| - 2.3e-17 62.8 5.3 4.6e-17 61.8 3.7 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|55379774|ref|YP_137624.1| - 5.5e-05 22.0 10.6 0.00011 21.1 7.3 1.4 1 0 0 1 1 1 1 MMPL family DUF872 PF05915.7 gi|55379774|ref|YP_137624.1| - 0.13 12.1 0.7 0.48 10.2 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) RNase_HII PF01351.13 gi|55379775|ref|YP_137625.1| - 2.6e-36 125.1 0.1 3e-36 124.9 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII THUMP PF02926.12 gi|55379776|ref|YP_137626.1| - 7.9e-06 25.8 0.0 1.6e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|55379776|ref|YP_137626.1| - 0.003 17.5 0.9 0.003 17.5 0.6 2.7 2 1 1 3 3 3 1 DnaJ central domain MS_channel PF00924.13 gi|55379777|ref|YP_137627.1| - 5e-47 159.9 0.0 1.1e-46 158.8 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel BacA PF02673.13 gi|55379778|ref|YP_137628.1| - 7.2e-48 163.0 14.1 9e-48 162.7 9.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF4382 PF14321.1 gi|55379779|ref|YP_137629.1| - 1.3e-22 80.3 0.4 1.6e-22 80.0 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|55379779|ref|YP_137629.1| - 0.0026 17.6 2.1 0.0052 16.6 1.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|55379779|ref|YP_137629.1| - 0.11 11.7 0.4 0.2 10.8 0.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CheF-arch PF04283.7 gi|55379780|ref|YP_137630.1| - 4.5e-31 107.7 0.0 7.1e-31 107.1 0.0 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Usp PF00582.21 gi|55379783|ref|YP_137633.1| - 4.4e-41 140.3 2.2 5e-41 140.1 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|55379783|ref|YP_137633.1| - 0.0099 15.6 0.6 0.17 11.5 0.4 2.2 1 1 0 1 1 1 1 Electron transfer flavoprotein domain SIMPL PF04402.9 gi|55379783|ref|YP_137633.1| - 0.063 13.1 0.5 0.13 12.1 0.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF541) MGS PF02142.17 gi|55379783|ref|YP_137633.1| - 0.066 13.1 0.1 1 9.3 0.0 2.4 1 1 1 2 2 2 0 MGS-like domain Dodecin PF07311.7 gi|55379783|ref|YP_137633.1| - 0.089 12.8 0.1 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Dodecin Abhydrolase_6 PF12697.2 gi|55379783|ref|YP_137633.1| - 0.09 12.6 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 Alpha/beta hydrolase family DXP_reductoisom PF02670.11 gi|55379783|ref|YP_137633.1| - 0.1 13.1 0.0 0.14 12.6 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF3226 PF11536.3 gi|55379783|ref|YP_137633.1| - 0.12 11.8 0.2 1.7 8.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) SSF PF00474.12 gi|55379784|ref|YP_137634.1| - 1.2e-50 172.3 34.0 1.4e-50 172.1 23.6 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.1 gi|55379785|ref|YP_137635.1| - 4.4e-27 93.8 0.0 5.3e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF3311 PF11755.3 gi|55379785|ref|YP_137635.1| - 0.022 14.2 0.2 0.031 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) DUF485 PF04341.7 gi|55379785|ref|YP_137635.1| - 0.061 13.0 1.0 0.089 12.5 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 AMP-binding PF00501.23 gi|55379786|ref|YP_137636.1| - 8.8e-92 307.6 0.0 1e-91 307.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55379786|ref|YP_137636.1| - 5.4e-18 65.7 0.3 1e-17 64.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain KNOX1 PF03790.8 gi|55379786|ref|YP_137636.1| - 0.19 11.1 0.2 0.35 10.2 0.1 1.4 1 0 0 1 1 1 0 KNOX1 domain HTH_10 PF04967.7 gi|55379787|ref|YP_137637.1| - 6.2e-21 73.7 0.0 2.5e-20 71.8 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|55379787|ref|YP_137637.1| - 8.2e-09 36.1 2.8 1.6e-08 35.1 0.9 2.3 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55379787|ref|YP_137637.1| - 3.2e-07 30.4 0.1 1.3e-06 28.5 0.1 2.1 1 0 0 1 1 1 1 GAF domain Phage_integrase PF00589.17 gi|55379787|ref|YP_137637.1| - 7.2e-05 22.5 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family HTH_29 PF13551.1 gi|55379787|ref|YP_137637.1| - 0.0017 18.4 0.7 0.71 10.0 0.0 3.5 2 1 1 3 3 3 1 Winged helix-turn helix GerE PF00196.14 gi|55379787|ref|YP_137637.1| - 0.0018 17.5 0.0 0.0089 15.3 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|55379787|ref|YP_137637.1| - 0.0019 17.9 0.3 0.012 15.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|55379787|ref|YP_137637.1| - 0.0028 16.9 0.0 0.016 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|55379787|ref|YP_137637.1| - 0.016 14.9 0.1 0.8 9.4 0.0 2.9 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|55379787|ref|YP_137637.1| - 0.025 14.2 0.0 0.073 12.7 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|55379787|ref|YP_137637.1| - 0.14 11.8 0.1 0.42 10.3 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.1 gi|55379787|ref|YP_137637.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain AMP-binding PF00501.23 gi|55379788|ref|YP_137638.1| - 7.1e-85 284.9 0.5 9.2e-85 284.5 0.4 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|55379788|ref|YP_137638.1| - 9.1e-15 55.3 0.3 2.2e-14 54.1 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain CheF-arch PF04283.7 gi|55379789|ref|YP_137639.1| - 1.1e-66 224.1 1.2 1.5e-66 223.7 0.8 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea PrpF PF04303.8 gi|55379789|ref|YP_137639.1| - 0.044 12.5 0.1 0.057 12.1 0.1 1.2 1 0 0 1 1 1 0 PrpF protein NTP_transferase PF00483.18 gi|55379790|ref|YP_137640.1| - 2.7e-37 128.3 0.0 3.4e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55379790|ref|YP_137640.1| - 1.2e-15 57.9 0.1 2.3e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|55379790|ref|YP_137640.1| - 3.7e-13 48.3 9.9 4e-10 38.7 1.9 4.0 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|55379790|ref|YP_137640.1| - 1.6e-07 31.1 0.2 3.2e-07 30.1 0.1 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|55379790|ref|YP_137640.1| - 1.2e-06 27.9 6.9 1.9e-06 27.3 1.2 3.3 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|55379791|ref|YP_137641.1| - 1.2e-52 177.0 0.5 1.7e-25 89.1 0.0 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|55379791|ref|YP_137641.1| - 3.1e-26 91.9 0.1 6.6e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|55379791|ref|YP_137641.1| - 3.7e-22 78.3 0.0 7e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|55379791|ref|YP_137641.1| - 1.5e-21 76.5 0.1 2.9e-16 59.1 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|55379791|ref|YP_137641.1| - 0.0013 17.4 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Bac_transf PF02397.11 gi|55379792|ref|YP_137642.1| - 8.3e-36 122.8 0.0 9.1e-36 122.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase PapD-like PF14874.1 gi|55379792|ref|YP_137642.1| - 0.087 12.7 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 Flagellar-associated PapD-like NTP_transferase PF00483.18 gi|55379793|ref|YP_137643.1| - 2.2e-43 148.3 0.0 2.4e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55379793|ref|YP_137643.1| - 6.9e-15 55.4 0.0 8.3e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|55379793|ref|YP_137643.1| - 8.6e-06 25.4 0.0 4.4e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EF-hand_9 PF14658.1 gi|55379793|ref|YP_137643.1| - 0.064 13.1 0.0 9.2 6.2 0.0 2.3 2 0 0 2 2 2 0 EF-hand domain Glycos_transf_2 PF00535.21 gi|55379793|ref|YP_137643.1| - 0.12 12.0 0.1 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.9 gi|55379794|ref|YP_137644.1| - 2.1e-52 177.2 0.0 6.4e-52 175.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|55379794|ref|YP_137644.1| - 1.9e-33 114.5 0.0 3.6e-33 113.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|55379794|ref|YP_137644.1| - 4.1e-26 91.1 0.0 2.1e-25 88.9 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|55379794|ref|YP_137644.1| - 7.7e-07 28.9 0.0 2.9e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|55379794|ref|YP_137644.1| - 6.4e-05 22.6 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55379794|ref|YP_137644.1| - 0.00035 20.0 0.0 0.00078 18.9 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|55379794|ref|YP_137644.1| - 0.00073 19.8 0.1 0.0026 18.1 0.1 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55379794|ref|YP_137644.1| - 0.0022 17.9 0.1 0.0068 16.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|55379794|ref|YP_137644.1| - 0.011 15.7 1.8 0.038 13.9 0.1 2.8 4 0 0 4 4 4 0 TrkA-N domain DAO PF01266.19 gi|55379794|ref|YP_137644.1| - 0.027 13.3 0.5 0.061 12.2 0.1 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|55379794|ref|YP_137644.1| - 0.035 13.2 0.0 0.2 10.8 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|55379794|ref|YP_137644.1| - 0.063 13.0 0.2 0.18 11.6 0.1 1.8 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.16 gi|55379794|ref|YP_137644.1| - 0.086 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF43 PF01861.11 gi|55379794|ref|YP_137644.1| - 0.092 11.7 0.1 0.33 9.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF43 NAD_binding_11 PF14833.1 gi|55379794|ref|YP_137644.1| - 0.24 11.4 1.8 1.2 9.2 0.2 2.6 2 1 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DUF457 PF04307.9 gi|55379795|ref|YP_137645.1| - 7.7e-11 41.5 5.2 1e-10 41.1 3.6 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4131 PF13567.1 gi|55379796|ref|YP_137646.1| - 0.0005 19.5 0.5 0.3 10.4 0.0 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF4131) tRNA_anti-codon PF01336.20 gi|55379796|ref|YP_137646.1| - 0.021 14.7 0.2 3.2 7.6 0.0 2.2 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain TOBE PF03459.12 gi|55379796|ref|YP_137646.1| - 0.49 10.5 3.0 1.9 8.6 1.0 2.4 2 1 1 3 3 3 0 TOBE domain STT3 PF02516.9 gi|55379797|ref|YP_137647.1| - 2.8e-10 39.8 23.1 7.3e-10 38.4 16.0 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit fn3_3 PF14686.1 gi|55379797|ref|YP_137647.1| - 0.004 17.2 0.6 0.013 15.6 0.4 1.8 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.1 gi|55379797|ref|YP_137647.1| - 0.0075 16.3 9.6 0.019 15.0 6.6 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|55379797|ref|YP_137647.1| - 0.0078 16.2 0.6 0.015 15.3 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Epimerase PF01370.16 gi|55379798|ref|YP_137648.1| - 1.5e-39 135.8 0.0 2e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55379798|ref|YP_137648.1| - 2.8e-25 88.8 0.1 3.4e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|55379798|ref|YP_137648.1| - 4.8e-22 77.9 0.0 6.7e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|55379798|ref|YP_137648.1| - 1.2e-13 50.6 0.0 6.8e-13 48.1 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|55379798|ref|YP_137648.1| - 8.3e-12 44.5 0.0 1.2e-08 34.1 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|55379798|ref|YP_137648.1| - 8.8e-09 35.6 2.5 2e-08 34.4 0.1 2.4 2 1 0 2 2 2 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|55379798|ref|YP_137648.1| - 0.00032 19.7 0.1 0.00058 18.9 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|55379798|ref|YP_137648.1| - 0.00095 18.4 0.1 0.015 14.6 0.1 2.3 2 0 0 2 2 2 1 NmrA-like family Semialdhyde_dh PF01118.19 gi|55379798|ref|YP_137648.1| - 0.0028 17.9 0.0 0.0077 16.5 0.0 1.8 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|55379798|ref|YP_137648.1| - 0.0032 17.3 0.1 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.18 gi|55379798|ref|YP_137648.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF3821 PF12863.2 gi|55379798|ref|YP_137648.1| - 0.082 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) adh_short PF00106.20 gi|55379798|ref|YP_137648.1| - 0.39 10.6 5.6 0.33 10.8 1.6 2.4 2 1 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.16 gi|55379799|ref|YP_137649.1| - 8.3e-49 166.1 0.0 9.8e-49 165.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55379799|ref|YP_137649.1| - 1e-26 93.3 0.0 1.4e-26 92.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|55379799|ref|YP_137649.1| - 2.2e-16 59.6 0.0 2.7e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55379799|ref|YP_137649.1| - 2.8e-16 60.0 0.0 3.9e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|55379799|ref|YP_137649.1| - 5.4e-12 45.2 0.0 1.5e-11 43.7 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|55379799|ref|YP_137649.1| - 5.3e-11 41.9 0.0 6e-09 35.1 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|55379799|ref|YP_137649.1| - 2.1e-05 24.4 0.5 5.4e-05 23.1 0.3 1.6 1 1 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|55379799|ref|YP_137649.1| - 0.00027 20.0 0.1 0.00041 19.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|55379799|ref|YP_137649.1| - 0.0053 16.0 0.0 0.082 12.1 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.18 gi|55379799|ref|YP_137649.1| - 0.0078 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|55379799|ref|YP_137649.1| - 0.042 14.1 0.0 0.096 12.9 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|55379799|ref|YP_137649.1| - 0.042 13.5 0.2 0.096 12.3 0.2 1.6 1 1 0 1 1 1 0 KR domain Epimerase PF01370.16 gi|55379800|ref|YP_137650.1| - 1.8e-21 76.6 0.0 3.7e-21 75.6 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|55379800|ref|YP_137650.1| - 3.8e-05 23.6 0.1 7.8e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|55379800|ref|YP_137650.1| - 0.00042 19.2 0.1 0.027 13.3 0.1 3.0 3 1 0 3 3 3 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|55379800|ref|YP_137650.1| - 0.00088 18.2 0.0 0.025 13.4 0.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|55379800|ref|YP_137650.1| - 0.0061 16.2 0.0 0.0085 15.7 0.0 1.2 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|55379800|ref|YP_137650.1| - 0.008 14.9 0.0 0.018 13.7 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family CBS PF00571.23 gi|55379803|ref|YP_137653.1| - 6.8e-19 67.3 4.1 1.1e-10 41.1 0.2 2.3 2 0 0 2 2 2 2 CBS domain dCMP_cyt_deam_1 PF00383.17 gi|55379804|ref|YP_137654.1| - 8.8e-14 51.0 0.0 1.3e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|55379804|ref|YP_137654.1| - 0.0033 17.1 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase APOBEC_N PF08210.6 gi|55379804|ref|YP_137654.1| - 0.036 13.6 0.0 0.043 13.4 0.0 1.1 1 0 0 1 1 1 0 APOBEC-like N-terminal domain GFO_IDH_MocA PF01408.17 gi|55379805|ref|YP_137655.1| - 3.5e-27 95.3 0.6 5.8e-27 94.5 0.4 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Methyltrn_RNA_2 PF04013.7 gi|55379806|ref|YP_137656.1| - 8.7e-64 214.7 0.0 9.8e-64 214.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase EzrA PF06160.7 gi|55379807|ref|YP_137657.1| - 0.017 13.3 0.0 0.025 12.7 0.0 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA NPP1 PF05630.6 gi|55379807|ref|YP_137657.1| - 0.048 13.3 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Necrosis inducing protein (NPP1) NUDIX PF00293.23 gi|55379808|ref|YP_137658.1| - 3.5e-15 55.8 0.0 5e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain TMF_TATA_bd PF12325.3 gi|55379809|ref|YP_137659.1| - 0.051 13.3 0.1 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF3924 PF13062.1 gi|55379809|ref|YP_137659.1| - 0.15 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) RHH_1 PF01402.16 gi|55379809|ref|YP_137659.1| - 0.36 10.8 2.5 5.5 7.0 1.8 2.2 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family TGT PF01702.13 gi|55379810|ref|YP_137660.1| - 1.1e-44 152.4 0.0 1.5e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|55379810|ref|YP_137660.1| - 0.044 13.6 0.1 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Glyco_hydro_3 PF00933.16 gi|55379810|ref|YP_137660.1| - 0.14 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain Epimerase PF01370.16 gi|55379811|ref|YP_137661.1| - 1.3e-21 77.1 0.0 9.8e-20 70.9 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|55379811|ref|YP_137661.1| - 1.4e-10 40.5 0.0 2.3e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|55379811|ref|YP_137661.1| - 1.3e-09 38.3 0.2 1.9e-09 37.8 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|55379811|ref|YP_137661.1| - 1.8e-06 27.0 0.0 6.1e-06 25.3 0.0 1.7 1 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|55379811|ref|YP_137661.1| - 0.0008 18.3 0.1 0.019 13.8 0.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|55379811|ref|YP_137661.1| - 0.0014 17.4 0.0 0.0029 16.3 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|55379811|ref|YP_137661.1| - 0.15 11.9 2.4 0.1 12.4 0.2 1.9 2 0 0 2 2 2 0 short chain dehydrogenase Alginate_lyase PF05426.7 gi|55379812|ref|YP_137662.1| - 9.8e-53 179.2 4.1 1.5e-52 178.6 2.8 1.3 1 0 0 1 1 1 1 Alginate lyase TGT_C2 PF14810.1 gi|55379813|ref|YP_137663.1| - 2.6e-21 75.2 0.0 6e-21 74.0 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|55379813|ref|YP_137663.1| - 2.5e-17 62.9 0.0 7.3e-17 61.4 0.0 1.7 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|55379813|ref|YP_137663.1| - 7.3e-13 48.0 0.0 1.8e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 PUA domain VanZ PF04892.7 gi|55379814|ref|YP_137664.1| - 7.7e-08 32.3 0.3 9.8e-08 32.0 0.2 1.1 1 0 0 1 1 1 1 VanZ like family DUF2279 PF10043.4 gi|55379814|ref|YP_137664.1| - 0.036 14.3 0.1 0.053 13.8 0.1 1.3 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Radical_SAM PF04055.16 gi|55379815|ref|YP_137665.1| - 0.0026 17.9 0.4 0.0048 17.0 0.2 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF1414 PF07208.6 gi|55379815|ref|YP_137665.1| - 0.061 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1414) TOBE PF03459.12 gi|55379816|ref|YP_137666.1| - 7.9e-14 51.5 12.5 8.3e-13 48.2 0.4 3.5 4 0 0 4 4 4 2 TOBE domain HTH_1 PF00126.22 gi|55379816|ref|YP_137666.1| - 9.7e-10 38.0 0.4 2e-09 37.0 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF1932 PF09130.6 gi|55379816|ref|YP_137666.1| - 0.015 15.0 0.1 0.057 13.1 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1932) HTH_28 PF13518.1 gi|55379816|ref|YP_137666.1| - 0.092 12.7 0.1 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4263 PF14082.1 gi|55379816|ref|YP_137666.1| - 0.16 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) TOBE_2 PF08402.5 gi|55379816|ref|YP_137666.1| - 0.35 10.8 4.2 0.47 10.4 0.1 2.9 2 1 1 3 3 3 0 TOBE domain ABC_tran PF00005.22 gi|55379817|ref|YP_137667.1| - 3.9e-32 111.4 0.0 7.9e-32 110.4 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|55379817|ref|YP_137667.1| - 2.5e-11 44.1 0.0 3.9e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55379817|ref|YP_137667.1| - 7.7e-07 29.2 1.7 4.1e-06 26.9 1.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|55379817|ref|YP_137667.1| - 9.7e-07 28.2 0.0 1.8e-06 27.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|55379817|ref|YP_137667.1| - 6.1e-06 25.8 0.0 0.091 12.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_17 PF13207.1 gi|55379817|ref|YP_137667.1| - 7.4e-06 26.7 0.3 1.5e-05 25.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|55379817|ref|YP_137667.1| - 2.3e-05 24.1 0.1 0.0032 17.1 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|55379817|ref|YP_137667.1| - 8.9e-05 21.9 0.4 0.00088 18.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|55379817|ref|YP_137667.1| - 0.00017 21.7 0.1 0.00061 19.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55379817|ref|YP_137667.1| - 0.0003 21.0 0.0 0.0013 19.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|55379817|ref|YP_137667.1| - 0.00035 20.4 0.6 0.0093 15.8 0.4 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|55379817|ref|YP_137667.1| - 0.00065 18.9 0.0 0.00095 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|55379817|ref|YP_137667.1| - 0.0017 18.0 2.9 0.11 12.2 0.0 2.6 3 0 0 3 3 2 1 Part of AAA domain TraG-D_C PF12696.2 gi|55379817|ref|YP_137667.1| - 0.0024 17.7 0.0 0.0061 16.4 0.0 1.6 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG NACHT PF05729.7 gi|55379817|ref|YP_137667.1| - 0.0031 17.1 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.1 gi|55379817|ref|YP_137667.1| - 0.0032 16.9 0.0 0.006 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|55379817|ref|YP_137667.1| - 0.0041 17.0 0.1 0.011 15.7 0.0 1.9 2 1 1 3 3 2 1 AAA domain AAA PF00004.24 gi|55379817|ref|YP_137667.1| - 0.0063 16.7 0.0 0.026 14.7 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|55379817|ref|YP_137667.1| - 0.0069 16.2 0.4 0.017 15.0 0.3 2.0 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|55379817|ref|YP_137667.1| - 0.0076 14.9 0.0 0.093 11.3 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.1 gi|55379817|ref|YP_137667.1| - 0.0078 16.5 0.0 0.0097 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|55379817|ref|YP_137667.1| - 0.0099 15.7 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|55379817|ref|YP_137667.1| - 0.011 15.3 0.1 0.014 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|55379817|ref|YP_137667.1| - 0.037 13.7 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|55379817|ref|YP_137667.1| - 0.049 13.1 3.8 0.28 10.7 0.0 3.1 2 2 1 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|55379817|ref|YP_137667.1| - 0.057 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase UPF0079 PF02367.12 gi|55379817|ref|YP_137667.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|55379817|ref|YP_137667.1| - 0.094 12.6 0.1 0.12 12.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|55379817|ref|YP_137667.1| - 0.097 12.1 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|55379817|ref|YP_137667.1| - 0.17 10.7 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|55379818|ref|YP_137668.1| - 4e-15 55.7 6.0 4e-15 55.7 4.2 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2427 PF10348.4 gi|55379818|ref|YP_137668.1| - 0.18 11.3 3.1 0.12 11.9 0.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) PBP_like_2 PF12849.2 gi|55379819|ref|YP_137669.1| - 2.6e-26 92.7 2.1 3.6e-26 92.2 1.4 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|55379819|ref|YP_137669.1| - 7.3e-06 25.7 0.0 1.3e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|55379819|ref|YP_137669.1| - 0.088 11.7 0.2 0.29 10.0 0.2 1.9 1 1 0 1 1 1 0 PBP superfamily domain Orbi_VP6 PF01516.11 gi|55379819|ref|YP_137669.1| - 0.59 9.1 5.2 1 8.3 3.6 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 GATase_5 PF13507.1 gi|55379820|ref|YP_137670.1| - 7.7e-31 106.9 0.0 1e-30 106.5 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|55379820|ref|YP_137670.1| - 0.0052 16.2 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|55379820|ref|YP_137670.1| - 0.046 13.2 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PurS PF02700.9 gi|55379821|ref|YP_137671.1| - 4.3e-26 90.6 0.0 4.8e-26 90.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase CHAD PF05235.9 gi|55379821|ref|YP_137671.1| - 0.029 13.9 1.0 0.035 13.7 0.7 1.1 1 0 0 1 1 1 0 CHAD domain GAF PF01590.21 gi|55379823|ref|YP_137673.1| - 2.5e-12 47.1 0.7 5.5e-12 46.0 0.2 1.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55379823|ref|YP_137673.1| - 1.9e-06 27.9 0.0 3.9e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|55379823|ref|YP_137673.1| - 4.4e-06 27.2 0.1 1e-05 26.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|55379823|ref|YP_137673.1| - 0.0018 18.2 0.1 0.0057 16.6 0.0 1.9 1 1 1 2 2 2 1 Response regulator receiver domain K_channel_TID PF07941.6 gi|55379823|ref|YP_137673.1| - 0.61 10.3 2.8 17 5.7 0.3 2.4 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain Formyl_trans_N PF00551.14 gi|55379824|ref|YP_137674.1| - 1.4e-42 145.2 0.0 2.1e-42 144.6 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase Glyco_transf_28 PF03033.15 gi|55379824|ref|YP_137674.1| - 0.031 14.0 0.0 0.12 12.1 0.0 1.9 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain PAP2 PF01569.16 gi|55379825|ref|YP_137675.1| - 4.2e-19 68.4 4.9 4.2e-19 68.4 3.4 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|55379825|ref|YP_137675.1| - 2e-08 34.0 8.9 2.4e-07 30.4 6.1 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|55379825|ref|YP_137675.1| - 0.015 15.5 1.4 0.016 15.4 0.0 1.8 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Tim17 PF02466.14 gi|55379825|ref|YP_137675.1| - 0.74 9.8 4.9 0.17 11.8 0.9 1.8 2 1 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family TrbC PF04956.8 gi|55379825|ref|YP_137675.1| - 8.3 6.4 13.4 1.4 9.0 2.3 2.5 2 1 0 2 2 2 0 TrbC/VIRB2 family SAICAR_synt PF01259.13 gi|55379826|ref|YP_137676.1| - 1.3e-19 70.2 0.0 3.3e-19 68.9 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase Na_Ca_ex PF01699.19 gi|55379827|ref|YP_137677.1| - 2.2e-39 134.2 25.2 3.2e-20 72.1 4.2 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2003 PF09404.5 gi|55379827|ref|YP_137677.1| - 0.021 13.2 0.0 0.028 12.8 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) Radical_SAM PF04055.16 gi|55379828|ref|YP_137678.1| - 8.8e-12 45.5 0.2 1.7e-11 44.5 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|55379829|ref|YP_137679.1| - 4.6e-16 59.4 0.1 7e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Bac_rhodopsin PF01036.13 gi|55379830|ref|YP_137680.1| - 7.3e-49 166.0 21.6 8.6e-49 165.8 14.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MgtC PF02308.11 gi|55379830|ref|YP_137680.1| - 3.1 7.6 18.3 0.14 11.9 7.4 2.4 2 1 0 3 3 3 0 MgtC family MCPsignal PF00015.16 gi|55379831|ref|YP_137681.1| - 4.7e-55 186.4 72.4 8.7e-53 179.0 25.8 3.1 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|55379831|ref|YP_137681.1| - 0.00051 19.8 43.7 0.0048 16.7 4.8 5.7 3 2 3 6 6 6 2 Bacterial protein of unknown function (DUF948) TMF_TATA_bd PF12325.3 gi|55379831|ref|YP_137681.1| - 0.001 18.7 3.5 0.001 18.7 2.5 5.0 4 1 1 5 5 5 1 TATA element modulatory factor 1 TATA binding HAMP PF00672.20 gi|55379831|ref|YP_137681.1| - 0.0013 18.8 0.7 0.0013 18.8 0.5 5.5 3 3 1 4 4 4 1 HAMP domain Laminin_II PF06009.7 gi|55379831|ref|YP_137681.1| - 0.0022 17.7 48.9 0.015 15.0 5.7 5.2 2 2 2 5 5 5 2 Laminin Domain II DUF1664 PF07889.7 gi|55379831|ref|YP_137681.1| - 0.005 16.6 34.8 0.34 10.7 2.6 5.0 2 2 2 5 5 5 3 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|55379831|ref|YP_137681.1| - 0.021 14.0 45.2 0.11 11.7 8.9 4.2 1 1 4 5 5 5 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|55379831|ref|YP_137681.1| - 0.096 12.2 39.7 0.58 9.7 5.8 4.6 1 1 3 4 4 4 0 IncA protein Hormone_1 PF00103.15 gi|55379831|ref|YP_137681.1| - 0.28 10.5 8.4 0.66 9.2 0.1 3.7 2 2 2 4 4 4 0 Somatotropin hormone family GAS PF13851.1 gi|55379831|ref|YP_137681.1| - 0.34 10.0 27.6 0.56 9.3 1.0 4.1 2 2 1 4 4 4 0 Growth-arrest specific micro-tubule binding RmuC PF02646.11 gi|55379831|ref|YP_137681.1| - 0.54 9.0 26.8 0.27 10.0 1.4 4.6 3 2 1 4 4 4 0 RmuC family FlgN PF05130.7 gi|55379831|ref|YP_137681.1| - 0.72 10.1 40.9 1.2 9.4 3.5 4.4 3 2 1 4 4 4 0 FlgN protein CENP-F_leu_zip PF10473.4 gi|55379831|ref|YP_137681.1| - 1.1 9.1 42.5 1.2 9.0 3.4 4.3 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|55379831|ref|YP_137681.1| - 1.1 7.8 41.6 0.33 9.5 7.2 3.9 2 2 0 3 3 3 0 Spc7 kinetochore protein DUF489 PF04356.7 gi|55379831|ref|YP_137681.1| - 1.3 8.5 18.7 0.061 12.9 1.8 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF489) Tweety PF04906.8 gi|55379831|ref|YP_137681.1| - 1.3 7.3 26.0 2 6.7 2.1 3.3 1 1 2 3 3 3 0 Tweety Filament PF00038.16 gi|55379831|ref|YP_137681.1| - 1.4 8.2 48.1 0.55 9.6 14.1 3.5 1 1 2 3 3 3 0 Intermediate filament protein AAA_27 PF13514.1 gi|55379831|ref|YP_137681.1| - 1.9 6.0 62.6 4.2 4.9 43.4 1.6 1 1 0 1 1 1 0 AAA domain APG6 PF04111.7 gi|55379831|ref|YP_137681.1| - 2.1 7.3 40.2 0.71 8.8 8.3 3.4 2 1 1 3 3 3 0 Autophagy protein Apg6 DUF3584 PF12128.3 gi|55379831|ref|YP_137681.1| - 2.6 5.2 47.4 1.4 6.1 7.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) Myosin_tail_1 PF01576.14 gi|55379831|ref|YP_137681.1| - 2.8 5.5 49.7 0.083 10.6 11.3 3.1 1 1 2 3 3 3 0 Myosin tail BLOC1_2 PF10046.4 gi|55379831|ref|YP_137681.1| - 3.2 7.9 39.3 3.1 7.9 0.8 5.9 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MutS_III PF05192.13 gi|55379831|ref|YP_137681.1| - 3.4 7.4 20.6 4.1 7.1 7.0 2.6 2 1 0 2 2 2 0 MutS domain III Snapin_Pallidin PF14712.1 gi|55379831|ref|YP_137681.1| - 4.5 7.6 22.0 1.1 9.5 0.2 4.6 4 1 1 5 5 5 0 Snapin/Pallidin Prefoldin_2 PF01920.15 gi|55379831|ref|YP_137681.1| - 4.8 7.0 39.8 4.5 7.0 0.4 7.0 5 1 2 7 7 7 0 Prefoldin subunit MscS_porin PF12795.2 gi|55379831|ref|YP_137681.1| - 5 6.3 53.8 3.1 7.0 7.4 3.7 2 1 2 4 4 4 0 Mechanosensitive ion channel porin domain DUF4559 PF15112.1 gi|55379831|ref|YP_137681.1| - 5.1 6.1 30.3 0.62 9.1 5.7 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) V_ATPase_I PF01496.14 gi|55379831|ref|YP_137681.1| - 5.2 4.8 27.6 1.5 6.5 15.5 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Syntaxin PF00804.20 gi|55379831|ref|YP_137681.1| - 5.8 7.1 41.9 1.3 9.2 3.9 5.1 3 2 2 5 5 5 0 Syntaxin STAT_alpha PF01017.15 gi|55379831|ref|YP_137681.1| - 5.9 6.5 25.0 0.92 9.2 0.6 4.1 2 2 2 4 4 4 0 STAT protein, all-alpha domain DUF869 PF05911.6 gi|55379831|ref|YP_137681.1| - 6.6 4.8 41.7 4.1 5.5 2.9 1.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) COG5 PF10392.4 gi|55379831|ref|YP_137681.1| - 6.9 6.6 21.9 3.6 7.5 1.5 3.8 2 2 1 3 3 3 0 Golgi transport complex subunit 5 DUF4200 PF13863.1 gi|55379831|ref|YP_137681.1| - 7.1 6.6 33.7 0.19 11.7 2.1 4.6 4 1 1 5 5 5 0 Domain of unknown function (DUF4200) DUF3450 PF11932.3 gi|55379831|ref|YP_137681.1| - 8 5.6 55.7 1.4 8.1 7.5 4.5 1 1 2 4 4 4 0 Protein of unknown function (DUF3450) APG17 PF04108.7 gi|55379831|ref|YP_137681.1| - 9.8 4.8 39.3 0.27 9.9 5.9 4.6 2 2 0 4 4 4 0 Autophagy protein Apg17 CofC PF01983.11 gi|55379832|ref|YP_137682.1| - 3.9e-39 133.8 0.0 4.6e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|55379832|ref|YP_137682.1| - 0.00011 22.3 0.6 0.00016 21.8 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NLE PF08154.7 gi|55379832|ref|YP_137682.1| - 0.061 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NLE (NUC135) domain DUF4398 PF14346.1 gi|55379833|ref|YP_137683.1| - 1.7e-05 24.7 13.5 3.8e-05 23.6 9.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF4366 PF14283.1 gi|55379833|ref|YP_137683.1| - 0.0021 17.4 3.2 0.085 12.2 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF4366) Orthoreo_P10 PF07204.6 gi|55379833|ref|YP_137683.1| - 0.072 12.8 0.3 0.16 11.7 0.1 1.6 1 1 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 Tubulin PF00091.20 gi|55379834|ref|YP_137684.1| - 1.4e-24 87.1 0.0 3.4e-24 85.8 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain NAD_binding_10 PF13460.1 gi|55379835|ref|YP_137685.1| - 2.7e-30 105.7 0.0 3.3e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55379835|ref|YP_137685.1| - 1.7e-21 76.7 0.0 1e-20 74.2 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55379835|ref|YP_137685.1| - 3.5e-15 55.4 0.0 1.7e-13 49.9 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|55379835|ref|YP_137685.1| - 7e-14 51.6 0.0 7.8e-14 51.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.12 gi|55379835|ref|YP_137685.1| - 5.1e-11 41.9 0.0 7.4e-06 25.0 0.0 2.6 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|55379835|ref|YP_137685.1| - 2.4e-06 26.6 0.0 0.021 13.7 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|55379835|ref|YP_137685.1| - 5.2e-06 25.5 0.0 6.2e-05 22.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|55379835|ref|YP_137685.1| - 4.5e-05 23.4 0.1 8.3e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|55379835|ref|YP_137685.1| - 0.00085 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|55379835|ref|YP_137685.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_4 PF13579.1 gi|55379835|ref|YP_137685.1| - 0.017 15.2 0.3 0.058 13.5 0.1 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain F420_oxidored PF03807.12 gi|55379835|ref|YP_137685.1| - 0.023 15.1 0.0 0.043 14.2 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent KR PF08659.5 gi|55379835|ref|YP_137685.1| - 0.023 14.3 0.2 0.055 13.1 0.1 1.7 2 1 0 2 2 2 0 KR domain Semialdhyde_dh PF01118.19 gi|55379835|ref|YP_137685.1| - 0.042 14.1 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|55379835|ref|YP_137685.1| - 0.074 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Thymidylate_kin PF02223.12 gi|55379836|ref|YP_137686.1| - 6.2e-35 120.2 0.0 7.7e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|55379836|ref|YP_137686.1| - 3.3e-07 30.2 0.3 5.7e-07 29.5 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55379836|ref|YP_137686.1| - 1.8e-06 28.2 0.0 3e-05 24.3 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|55379836|ref|YP_137686.1| - 0.00062 19.7 0.6 0.00088 19.2 0.4 1.3 1 1 0 1 1 1 1 AAA domain Arf PF00025.16 gi|55379836|ref|YP_137686.1| - 0.042 13.1 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_22 PF13401.1 gi|55379836|ref|YP_137686.1| - 0.086 12.9 0.0 0.22 11.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|55379836|ref|YP_137686.1| - 0.13 11.5 0.0 0.38 9.9 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Polysacc_synt_C PF14667.1 gi|55379837|ref|YP_137687.1| - 0.099 12.4 11.4 0.13 12.1 7.9 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|55379837|ref|YP_137687.1| - 0.27 10.6 11.3 0.31 10.4 7.8 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Yip1 PF04893.12 gi|55379837|ref|YP_137687.1| - 1.2 8.6 11.4 1.9 7.9 7.4 1.6 1 1 0 1 1 1 0 Yip1 domain YqhR PF11085.3 gi|55379837|ref|YP_137687.1| - 1.4 8.4 8.2 1.7 8.1 5.7 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR ABC2_membrane_4 PF12730.2 gi|55379837|ref|YP_137687.1| - 1.9 7.6 11.9 2.4 7.2 8.2 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Tic20 PF09685.5 gi|55379837|ref|YP_137687.1| - 7.5 6.5 9.2 10 6.1 6.4 1.3 1 0 0 1 1 1 0 Tic20-like protein AsnC_trans_reg PF01037.16 gi|55379838|ref|YP_137688.1| - 3e-10 39.6 0.1 3.3e-10 39.5 0.0 1.0 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|55379839|ref|YP_137689.1| - 1.9e-25 89.1 0.6 2.8e-25 88.5 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|55379839|ref|YP_137689.1| - 1.1e-10 40.9 0.2 2.9e-10 39.5 0.0 1.8 2 0 0 2 2 1 1 TrkA-C domain FAD_binding_3 PF01494.14 gi|55379839|ref|YP_137689.1| - 1.4e-06 27.6 0.2 2e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|55379839|ref|YP_137689.1| - 3.3e-06 26.2 0.7 4.9e-06 25.6 0.3 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|55379839|ref|YP_137689.1| - 9.3e-06 25.1 0.0 2.2e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|55379839|ref|YP_137689.1| - 1e-05 25.6 0.6 1.5e-05 25.1 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|55379839|ref|YP_137689.1| - 1.2e-05 24.9 0.6 2e-05 24.3 0.4 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|55379839|ref|YP_137689.1| - 1.3e-05 24.7 0.1 2.4e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|55379839|ref|YP_137689.1| - 6.5e-05 23.1 0.1 0.00012 22.3 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|55379839|ref|YP_137689.1| - 0.00012 22.3 0.4 0.00027 21.2 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|55379839|ref|YP_137689.1| - 0.00018 20.8 0.1 0.00032 20.0 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_8 PF13450.1 gi|55379839|ref|YP_137689.1| - 0.00053 19.9 0.4 0.0012 18.8 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|55379839|ref|YP_137689.1| - 0.00059 19.4 0.4 0.0013 18.3 0.3 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|55379839|ref|YP_137689.1| - 0.00089 18.4 0.1 0.0015 17.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|55379839|ref|YP_137689.1| - 0.0009 19.1 0.1 0.0015 18.4 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|55379839|ref|YP_137689.1| - 0.0011 18.6 0.1 0.0034 17.1 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_2 PF00890.19 gi|55379839|ref|YP_137689.1| - 0.002 17.0 0.1 0.0021 16.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain XdhC_C PF13478.1 gi|55379839|ref|YP_137689.1| - 0.0026 18.0 0.1 0.0044 17.3 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|55379839|ref|YP_137689.1| - 0.0028 17.5 0.1 0.0058 16.4 0.1 1.6 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.9 gi|55379839|ref|YP_137689.1| - 0.0035 15.8 0.0 0.0059 15.1 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|55379839|ref|YP_137689.1| - 0.0052 15.9 0.0 0.0082 15.2 0.0 1.3 1 0 0 1 1 1 1 Thi4 family F420_oxidored PF03807.12 gi|55379839|ref|YP_137689.1| - 0.0073 16.7 0.2 0.028 14.8 0.2 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|55379839|ref|YP_137689.1| - 0.0085 16.6 0.1 0.015 15.7 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_3 PF13738.1 gi|55379839|ref|YP_137689.1| - 0.012 15.7 0.1 0.012 15.6 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|55379839|ref|YP_137689.1| - 0.018 14.2 0.5 0.055 12.7 0.4 1.6 1 1 1 2 2 2 0 NmrA-like family Saccharop_dh PF03435.13 gi|55379839|ref|YP_137689.1| - 0.018 14.0 0.2 0.022 13.7 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase CPSase_L_chain PF00289.17 gi|55379839|ref|YP_137689.1| - 0.025 14.7 0.3 0.07 13.2 0.1 1.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AdoHcyase_NAD PF00670.16 gi|55379839|ref|YP_137689.1| - 0.032 14.0 0.2 0.093 12.5 0.1 1.9 1 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.20 gi|55379839|ref|YP_137689.1| - 0.032 14.1 1.2 0.059 13.2 0.9 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Rossmann-like PF10727.4 gi|55379839|ref|YP_137689.1| - 0.068 12.8 0.2 0.21 11.3 0.1 1.8 2 0 0 2 2 2 0 Rossmann-like domain Methyltransf_31 PF13847.1 gi|55379839|ref|YP_137689.1| - 0.074 12.6 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Shikimate_DH PF01488.15 gi|55379839|ref|YP_137689.1| - 0.085 12.9 0.3 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Methyltransf_18 PF12847.2 gi|55379839|ref|YP_137689.1| - 0.13 12.8 0.7 0.26 11.9 0.5 1.7 1 1 0 1 1 1 0 Methyltransferase domain Glyoxalase PF00903.20 gi|55379839|ref|YP_137689.1| - 0.16 11.9 0.1 0.43 10.5 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AsnC_trans_reg PF01037.16 gi|55379840|ref|YP_137690.1| - 2e-14 53.0 0.7 2.3e-14 52.8 0.5 1.0 1 0 0 1 1 1 1 AsnC family CopD PF05425.8 gi|55379843|ref|YP_137693.1| - 0.0043 17.2 0.2 0.014 15.5 0.1 1.8 2 0 0 2 2 2 1 Copper resistance protein D BaxI_1 PF12811.2 gi|55379843|ref|YP_137693.1| - 0.053 12.6 0.9 0.073 12.2 0.6 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like DUF3292 PF11696.3 gi|55379843|ref|YP_137693.1| - 0.1 10.4 0.4 0.13 10.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) ABC_tran PF00005.22 gi|55379844|ref|YP_137694.1| - 5.1e-34 117.5 0.0 2.1e-33 115.5 0.0 1.8 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|55379844|ref|YP_137694.1| - 2.6e-17 62.9 0.4 5e-17 61.9 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|55379844|ref|YP_137694.1| - 3.2e-07 30.6 0.2 6.6e-05 23.0 0.0 2.2 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|55379844|ref|YP_137694.1| - 0.0028 16.9 0.0 0.01 15.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|55379844|ref|YP_137694.1| - 0.0091 16.1 0.5 0.053 13.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55379844|ref|YP_137694.1| - 0.013 15.5 0.4 0.038 13.9 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|55379844|ref|YP_137694.1| - 0.017 15.3 0.0 0.054 13.6 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|55379844|ref|YP_137694.1| - 0.028 13.5 0.1 0.05 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|55379844|ref|YP_137694.1| - 0.029 13.8 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|55379844|ref|YP_137694.1| - 0.04 13.3 0.1 9.7 5.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|55379844|ref|YP_137694.1| - 0.056 12.9 0.3 0.099 12.1 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TPR_16 PF13432.1 gi|55379844|ref|YP_137694.1| - 0.061 14.0 0.0 0.13 12.9 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_13 PF13166.1 gi|55379844|ref|YP_137694.1| - 0.075 11.4 0.1 6.1 5.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|55379844|ref|YP_137694.1| - 0.099 12.1 0.2 0.22 11.0 0.2 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.16 gi|55379844|ref|YP_137694.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|55379844|ref|YP_137694.1| - 0.12 12.1 1.3 1.6 8.4 0.9 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|55379844|ref|YP_137694.1| - 0.15 11.9 0.0 0.36 10.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|55379844|ref|YP_137694.1| - 0.27 11.1 1.4 0.39 10.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|55379845|ref|YP_137695.1| - 2.8e-29 102.1 0.0 4.3e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|55379845|ref|YP_137695.1| - 2.2e-18 66.3 0.3 4.6e-18 65.3 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|55379845|ref|YP_137695.1| - 1.1e-08 35.4 0.0 2.7e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55379845|ref|YP_137695.1| - 6.6e-05 22.2 0.0 9.6e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|55379845|ref|YP_137695.1| - 0.0066 15.9 0.1 0.086 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|55379845|ref|YP_137695.1| - 0.0073 16.4 0.5 0.15 12.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55379845|ref|YP_137695.1| - 0.022 14.3 0.1 0.039 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|55379845|ref|YP_137695.1| - 0.022 14.2 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|55379845|ref|YP_137695.1| - 0.041 13.3 0.2 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_16 PF13191.1 gi|55379845|ref|YP_137695.1| - 0.058 13.3 1.3 0.19 11.6 0.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.12 gi|55379845|ref|YP_137695.1| - 0.088 12.6 0.4 0.19 11.5 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|55379845|ref|YP_137695.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|55379845|ref|YP_137695.1| - 0.14 11.1 0.5 0.25 10.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|55379846|ref|YP_137696.1| - 3.9e-18 65.6 12.8 3.9e-18 65.6 8.9 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|55379846|ref|YP_137696.1| - 6.6e-05 22.1 3.1 7.2e-05 22.0 0.0 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|55379847|ref|YP_137697.1| - 4.5e-34 117.5 10.7 4.5e-34 117.5 7.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|55379848|ref|YP_137698.1| - 1.6e-63 214.8 4.0 1.6e-63 214.8 2.8 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|55379848|ref|YP_137698.1| - 4.7e-05 23.0 2.9 8.6e-05 22.2 2.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_19 PF06902.6 gi|55379849|ref|YP_137699.1| - 0.025 14.3 0.1 0.061 13.1 0.1 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster SHS2_FTSA PF02491.15 gi|55379849|ref|YP_137699.1| - 0.072 12.9 0.1 0.19 11.6 0.1 1.6 1 1 1 2 2 2 0 SHS2 domain inserted in FTSA Fer4_15 PF13459.1 gi|55379849|ref|YP_137699.1| - 0.077 13.5 0.6 0.15 12.6 0.4 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain MOSC PF03473.12 gi|55379850|ref|YP_137700.1| - 2.7e-21 75.4 0.0 3.7e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|55379850|ref|YP_137700.1| - 1.3e-07 31.3 1.4 3.4e-07 29.9 1.0 1.9 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain Pro_isomerase PF00160.16 gi|55379851|ref|YP_137701.1| - 1.3e-45 155.3 0.0 1.7e-45 155.0 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abhydrolase_6 PF12697.2 gi|55379852|ref|YP_137702.1| - 7.7e-39 133.9 9.8 9.6e-39 133.5 6.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|55379852|ref|YP_137702.1| - 1.7e-26 93.2 0.0 2.1e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|55379852|ref|YP_137702.1| - 2.1e-16 60.0 0.0 6e-16 58.5 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|55379852|ref|YP_137702.1| - 9.7e-08 31.7 0.1 1.7e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DLH PF01738.13 gi|55379852|ref|YP_137702.1| - 0.0047 16.2 0.0 0.092 12.0 0.0 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|55379852|ref|YP_137702.1| - 0.048 13.8 0.0 0.064 13.4 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain PGAP1 PF07819.8 gi|55379852|ref|YP_137702.1| - 0.056 13.0 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Peptidase_S9 PF00326.16 gi|55379852|ref|YP_137702.1| - 0.13 11.4 0.0 0.67 9.1 0.0 2.0 2 1 0 2 2 2 0 Prolyl oligopeptidase family Glycos_transf_3 PF00591.16 gi|55379853|ref|YP_137703.1| - 1.7e-31 109.5 0.0 2.3e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|55379853|ref|YP_137703.1| - 8.3e-11 41.3 0.4 4.7e-10 38.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|55379853|ref|YP_137703.1| - 0.085 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Toluene tolerance, Ttg2 HTH_AsnC-type PF13404.1 gi|55379854|ref|YP_137704.1| - 3.2e-14 52.1 0.5 4.7e-07 29.2 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|55379854|ref|YP_137704.1| - 9e-07 28.1 0.0 0.042 13.2 0.0 2.8 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55379854|ref|YP_137704.1| - 0.067 13.5 0.0 6.5 7.1 0.0 3.3 3 0 0 3 3 3 0 Winged helix DNA-binding domain HalX PF08663.5 gi|55379855|ref|YP_137705.1| - 3.1e-23 81.5 8.5 3.1e-23 81.5 5.9 1.9 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|55379855|ref|YP_137705.1| - 2.9e-18 65.8 0.3 4.9e-18 65.1 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HALZ PF02183.13 gi|55379855|ref|YP_137705.1| - 0.012 15.3 3.2 0.57 9.9 0.1 3.0 3 0 0 3 3 3 0 Homeobox associated leucine zipper GCHY-1 PF02649.9 gi|55379856|ref|YP_137706.1| - 3.5e-85 285.5 1.8 4e-85 285.4 1.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 CDC37_C PF08564.5 gi|55379856|ref|YP_137706.1| - 0.012 15.4 0.2 0.042 13.6 0.1 2.0 2 0 0 2 2 2 0 Cdc37 C terminal domain DUF1770 PF08589.5 gi|55379856|ref|YP_137706.1| - 0.086 13.4 0.3 0.086 13.4 0.2 2.2 1 1 1 2 2 2 0 Fungal protein of unknown function (DUF1770) TrmB PF01978.14 gi|55379857|ref|YP_137707.1| - 2.4e-21 75.1 0.2 4.5e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|55379857|ref|YP_137707.1| - 0.00017 20.6 0.0 0.00025 20.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|55379857|ref|YP_137707.1| - 0.0026 17.4 0.0 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family E2F_TDP PF02319.15 gi|55379857|ref|YP_137707.1| - 0.047 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PLDc_2 PF13091.1 gi|55379857|ref|YP_137707.1| - 0.047 13.4 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 PLD-like domain Vir_act_alpha_C PF10400.4 gi|55379857|ref|YP_137707.1| - 0.083 13.2 0.9 0.17 12.3 0.2 1.9 2 1 0 2 2 2 0 Virulence activator alpha C-term HTH_9 PF08221.6 gi|55379857|ref|YP_137707.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PhoU PF01895.14 gi|55379857|ref|YP_137707.1| - 0.36 11.2 2.1 2.3 8.7 1.1 2.5 1 1 1 2 2 2 0 PhoU domain Thioredox_DsbH PF03190.10 gi|55379858|ref|YP_137708.1| - 2.3e-24 85.9 0.0 4.1e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|55379858|ref|YP_137708.1| - 6.2e-11 42.1 0.0 2e-10 40.5 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.15 gi|55379858|ref|YP_137708.1| - 4.4e-05 23.1 0.0 8.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Glyco_hydro_88 PF07470.8 gi|55379858|ref|YP_137708.1| - 4.9e-05 22.5 0.1 0.13 11.2 0.0 2.8 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|55379858|ref|YP_137708.1| - 0.0014 18.8 0.0 0.0082 16.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Prenyltrans_1 PF13243.1 gi|55379858|ref|YP_137708.1| - 0.093 12.7 2.0 12 5.9 0.6 3.0 2 1 0 2 2 2 0 Prenyltransferase-like Glyco_hydro_76 PF03663.9 gi|55379858|ref|YP_137708.1| - 0.099 12.0 2.3 5 6.3 1.6 2.7 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 DUF1680 PF07944.7 gi|55379858|ref|YP_137708.1| - 0.14 10.4 0.1 12 4.0 0.0 2.2 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) p450 PF00067.17 gi|55379859|ref|YP_137709.1| - 1.4e-79 267.7 0.0 1.6e-79 267.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 FxsA PF04186.8 gi|55379860|ref|YP_137710.1| - 8.3e-30 102.8 8.1 1.1e-29 102.5 5.6 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SNARE_assoc PF09335.6 gi|55379860|ref|YP_137710.1| - 0.82 9.8 6.1 3.4 7.9 4.1 1.9 1 1 1 2 2 2 0 SNARE associated Golgi protein HTH_10 PF04967.7 gi|55379861|ref|YP_137711.1| - 0.013 15.0 0.1 0.27 10.8 0.0 2.6 2 1 0 2 2 2 0 HTH DNA binding domain TAT_signal PF10518.4 gi|55379861|ref|YP_137711.1| - 0.22 11.6 3.2 0.5 10.5 2.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LMWPc PF01451.16 gi|55379862|ref|YP_137712.1| - 5e-25 88.4 0.0 5.9e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF4013 PF13197.1 gi|55379863|ref|YP_137713.1| - 5.3e-28 97.4 21.4 7.2e-28 97.0 14.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF650 PF04894.7 gi|55379864|ref|YP_137714.1| - 9.6e-103 343.3 0.0 1.2e-102 343.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|55379864|ref|YP_137714.1| - 9e-39 131.5 0.0 1.7e-38 130.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) 7TM-7TMR_HD PF07698.6 gi|55379865|ref|YP_137715.1| - 0.23 10.9 9.5 0.29 10.5 6.6 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF2721 PF11026.3 gi|55379865|ref|YP_137715.1| - 0.27 10.8 5.6 0.4 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) SdpI PF13630.1 gi|55379865|ref|YP_137715.1| - 0.7 9.6 5.6 2.7 7.7 0.8 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family BCD PF15461.1 gi|55379865|ref|YP_137715.1| - 0.85 8.9 11.6 0.61 9.4 2.4 2.0 1 1 1 2 2 2 0 Beta-carotene 15,15'-dioxygenase Bax1-I PF01027.15 gi|55379865|ref|YP_137715.1| - 1.9 8.0 11.1 2.3 7.7 7.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 RVT_3 PF13456.1 gi|55379866|ref|YP_137716.1| - 2.1e-22 78.6 0.0 4e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|55379866|ref|YP_137716.1| - 3.9e-14 53.1 0.0 5.5e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 RNase H Mac PF12464.3 gi|55379866|ref|YP_137716.1| - 0.15 12.1 0.1 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 Maltose acetyltransferase PadR PF03551.9 gi|55379868|ref|YP_137718.1| - 8.5e-18 63.9 0.3 1.2e-17 63.4 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55379868|ref|YP_137718.1| - 6e-06 26.4 0.0 2e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|55379868|ref|YP_137718.1| - 0.0019 17.8 0.1 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.7 gi|55379868|ref|YP_137718.1| - 0.0063 14.6 0.1 0.0066 14.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.1 gi|55379868|ref|YP_137718.1| - 0.0094 15.7 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|55379868|ref|YP_137718.1| - 0.021 14.4 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.14 gi|55379868|ref|YP_137718.1| - 0.065 13.1 0.0 0.085 12.7 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.14 gi|55379869|ref|YP_137719.1| - 7e-55 184.7 1.6 7.9e-55 184.5 1.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.17 gi|55379871|ref|YP_137721.1| - 4.9e-56 190.6 0.4 5.7e-56 190.4 0.3 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|55379871|ref|YP_137721.1| - 0.11 11.6 2.6 0.4 9.8 0.9 2.3 3 0 0 3 3 3 0 Sulfatase DUF2063 PF09836.4 gi|55379871|ref|YP_137721.1| - 0.12 12.4 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) Tubulin PF00091.20 gi|55379872|ref|YP_137722.1| - 5.5e-24 85.1 0.4 2e-23 83.3 0.3 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|55379872|ref|YP_137722.1| - 0.0069 15.3 1.3 0.007 15.3 0.1 1.5 2 0 0 2 2 2 1 Tubulin like HEM4 PF02602.10 gi|55379872|ref|YP_137722.1| - 0.042 13.0 0.3 0.07 12.3 0.2 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD HTH_24 PF13412.1 gi|55379873|ref|YP_137723.1| - 4.2e-07 29.2 0.0 6.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55379873|ref|YP_137723.1| - 0.00016 21.3 0.1 0.00021 20.8 0.1 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|55379873|ref|YP_137723.1| - 0.00034 20.0 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|55379873|ref|YP_137723.1| - 0.00055 19.3 0.1 0.00075 18.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|55379873|ref|YP_137723.1| - 0.00069 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55379873|ref|YP_137723.1| - 0.0033 17.1 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55379873|ref|YP_137723.1| - 0.0049 16.5 0.1 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|55379873|ref|YP_137723.1| - 0.0072 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|55379873|ref|YP_137723.1| - 0.022 14.3 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|55379873|ref|YP_137723.1| - 0.035 13.5 0.1 0.083 12.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.15 gi|55379873|ref|YP_137723.1| - 0.037 14.1 0.0 0.048 13.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|55379873|ref|YP_137723.1| - 0.073 12.8 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|55379873|ref|YP_137723.1| - 0.1 12.1 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|55379873|ref|YP_137723.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_43 PF09904.4 gi|55379873|ref|YP_137723.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|55379873|ref|YP_137723.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|55379873|ref|YP_137723.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Polyketide_cyc2 PF10604.4 gi|55379874|ref|YP_137724.1| - 1.8e-17 63.7 0.9 2.7e-17 63.2 0.6 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55379874|ref|YP_137724.1| - 4.3e-07 29.9 0.2 1e-06 28.7 0.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|55379874|ref|YP_137724.1| - 0.0011 19.0 0.2 0.0021 18.1 0.1 1.6 1 1 1 2 2 2 1 Activator of Hsp90 ATPase homolog 1-like protein Copper-bind PF00127.15 gi|55379875|ref|YP_137725.1| - 2.9e-15 56.2 0.1 9.7e-15 54.6 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|55379875|ref|YP_137725.1| - 0.002 17.9 8.9 0.002 17.9 6.2 3.5 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|55379875|ref|YP_137725.1| - 0.034 14.0 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain CoA_transf_3 PF02515.12 gi|55379876|ref|YP_137726.1| - 0.023 13.9 0.6 0.037 13.2 0.4 1.3 1 0 0 1 1 1 0 CoA-transferase family III DUF805 PF05656.9 gi|55379876|ref|YP_137726.1| - 7.7 6.3 15.2 3.6 7.4 7.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF805) 7TM_transglut PF14402.1 gi|55379877|ref|YP_137727.1| - 0.056 12.3 2.1 0.066 12.1 1.5 1.1 1 0 0 1 1 1 0 7 transmembrane helices usually fused to an inactive transglutaminase Mem_trans PF03547.13 gi|55379877|ref|YP_137727.1| - 0.12 10.7 4.4 0.13 10.4 3.1 1.0 1 0 0 1 1 1 0 Membrane transport protein B12D PF06522.6 gi|55379877|ref|YP_137727.1| - 0.44 10.2 4.4 0.24 11.1 2.0 1.4 1 1 1 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit TPT PF03151.11 gi|55379877|ref|YP_137727.1| - 0.86 9.2 7.0 1 9.0 4.8 1.0 1 0 0 1 1 1 0 Triose-phosphate Transporter family PrgI PF12666.2 gi|55379877|ref|YP_137727.1| - 2.8 8.1 5.8 3.3 7.9 4.0 1.1 1 0 0 1 1 1 0 PrgI family protein CcoS PF03597.10 gi|55379877|ref|YP_137727.1| - 3.9 7.0 5.6 0.7 9.4 0.7 2.0 2 1 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type YlaC PF10777.4 gi|55379877|ref|YP_137727.1| - 7.9 6.0 6.0 9.3 5.7 4.1 1.0 1 0 0 1 1 1 0 Inner membrane protein YlaC AMP-binding PF00501.23 gi|55379878|ref|YP_137728.1| - 7.6e-05 21.2 0.1 0.079 11.3 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme MazG PF03819.12 gi|55379879|ref|YP_137729.1| - 1.2e-05 25.2 0.3 0.002 18.0 0.1 2.1 1 1 1 2 2 2 2 MazG nucleotide pyrophosphohydrolase domain CTDII PF01556.13 gi|55379880|ref|YP_137730.1| - 1.4e-33 114.5 0.0 1.2e-23 82.7 0.0 3.3 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|55379880|ref|YP_137730.1| - 7.6e-24 83.2 4.2 2.2e-23 81.7 2.2 2.1 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|55379880|ref|YP_137730.1| - 2.5e-15 56.2 17.5 4.9e-15 55.3 12.1 1.5 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|55379880|ref|YP_137730.1| - 0.0022 17.3 0.1 0.0048 16.2 0.1 1.5 1 0 0 1 1 1 1 A repeated domain in UCH-protein A2L_zn_ribbon PF08792.5 gi|55379880|ref|YP_137730.1| - 0.054 12.9 0.2 0.054 12.9 0.1 3.5 2 2 1 3 3 3 0 A2L zinc ribbon domain DUF3353 PF11833.3 gi|55379880|ref|YP_137730.1| - 0.34 10.3 2.2 0.77 9.1 1.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) GRP PF07172.6 gi|55379880|ref|YP_137730.1| - 0.55 10.7 18.1 2.1 8.8 12.5 2.1 1 0 0 1 1 1 0 Glycine rich protein family HypA PF01155.14 gi|55379880|ref|YP_137730.1| - 1 9.0 10.0 2.1 8.0 1.3 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1628 PF07790.6 gi|55379881|ref|YP_137731.1| - 0.00024 21.7 0.1 0.0013 19.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF1521 PF07481.6 gi|55379881|ref|YP_137731.1| - 0.019 14.6 0.5 0.042 13.5 0.1 1.6 1 1 0 2 2 2 0 Domain of Unknown Function (DUF1521) TrmB PF01978.14 gi|55379883|ref|YP_137733.1| - 1.2e-18 66.5 0.1 3.9e-18 64.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379883|ref|YP_137733.1| - 0.0055 16.3 0.1 0.27 10.9 0.0 2.6 2 0 0 2 2 2 1 MarR family Phage_rep_org_N PF09681.5 gi|55379883|ref|YP_137733.1| - 0.0056 16.2 0.0 0.022 14.3 0.0 1.9 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|55379883|ref|YP_137733.1| - 0.0091 15.8 0.0 0.062 13.2 0.0 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.16 gi|55379883|ref|YP_137733.1| - 0.058 12.8 0.0 0.21 11.0 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|55379883|ref|YP_137733.1| - 0.063 13.1 0.1 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain E2F_TDP PF02319.15 gi|55379883|ref|YP_137733.1| - 0.12 12.0 0.0 0.3 10.6 0.0 1.7 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain HSP70 PF00012.15 gi|55379885|ref|YP_137735.1| - 4.9e-243 807.4 19.9 7e-241 800.3 13.8 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|55379885|ref|YP_137735.1| - 1.6e-20 72.9 0.6 1.6e-20 72.9 0.4 2.4 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|55379885|ref|YP_137735.1| - 0.00038 19.5 0.2 0.0048 15.8 0.0 2.7 3 0 0 3 3 3 1 StbA protein Hydantoinase_A PF01968.13 gi|55379885|ref|YP_137735.1| - 0.0013 17.8 7.0 0.077 12.0 0.0 3.9 4 0 0 4 4 4 2 Hydantoinase/oxoprolinase FGGY_C PF02782.11 gi|55379885|ref|YP_137735.1| - 0.0015 18.2 0.0 0.0032 17.1 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|55379885|ref|YP_137735.1| - 0.0051 16.6 2.0 7.9 6.3 0.0 4.1 2 1 1 3 3 3 1 Cell division protein FtsA FIVAR PF07554.8 gi|55379885|ref|YP_137735.1| - 0.026 14.7 0.6 0.14 12.4 0.4 2.4 1 0 0 1 1 1 0 Uncharacterised Sugar-binding Domain GrpE PF01025.14 gi|55379886|ref|YP_137736.1| - 4.6e-41 140.1 5.1 4.6e-41 140.1 3.6 1.4 2 0 0 2 2 1 1 GrpE Med9 PF07544.8 gi|55379886|ref|YP_137736.1| - 0.0015 18.2 8.0 0.0019 17.8 3.4 2.6 2 1 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 IncA PF04156.9 gi|55379886|ref|YP_137736.1| - 0.0032 17.1 10.0 0.0045 16.6 7.0 1.3 1 0 0 1 1 1 1 IncA protein DUF972 PF06156.8 gi|55379886|ref|YP_137736.1| - 0.0038 17.5 5.4 0.0069 16.7 3.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|55379886|ref|YP_137736.1| - 0.0049 15.8 3.3 0.0059 15.5 2.3 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Leu_zip PF15294.1 gi|55379886|ref|YP_137736.1| - 0.0051 15.9 5.3 0.0075 15.4 3.7 1.2 1 0 0 1 1 1 1 Leucine zipper YscO PF07321.7 gi|55379886|ref|YP_137736.1| - 0.006 16.4 8.9 0.012 15.4 6.1 1.5 1 0 0 1 1 1 1 Type III secretion protein YscO FliJ PF02050.11 gi|55379886|ref|YP_137736.1| - 0.0064 16.5 7.7 0.012 15.6 5.4 1.4 1 0 0 1 1 1 1 Flagellar FliJ protein NYD-SP28 PF14772.1 gi|55379886|ref|YP_137736.1| - 0.0072 16.4 2.0 0.0072 16.4 1.4 2.3 1 1 1 2 2 2 1 Sperm tail Bacillus_HBL PF05791.6 gi|55379886|ref|YP_137736.1| - 0.0072 15.7 2.6 0.012 14.9 1.8 1.4 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) SlyX PF04102.7 gi|55379886|ref|YP_137736.1| - 0.02 15.2 6.2 0.02 15.2 4.3 2.4 2 1 0 2 2 1 0 SlyX GvpL_GvpF PF06386.6 gi|55379886|ref|YP_137736.1| - 0.023 14.2 4.2 0.037 13.6 2.9 1.5 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF641 PF04859.7 gi|55379886|ref|YP_137736.1| - 0.024 14.3 2.6 0.044 13.5 1.8 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) PsbQ PF05757.6 gi|55379886|ref|YP_137736.1| - 0.024 14.0 2.6 0.035 13.5 1.8 1.3 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Spc7 PF08317.6 gi|55379886|ref|YP_137736.1| - 0.024 13.2 3.2 0.031 12.9 2.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Fmp27_WPPW PF10359.4 gi|55379886|ref|YP_137736.1| - 0.026 12.9 3.7 0.031 12.7 2.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Spectrin PF00435.16 gi|55379886|ref|YP_137736.1| - 0.028 14.6 9.9 0.63 10.3 0.4 2.6 1 1 1 2 2 2 0 Spectrin repeat TMF_DNA_bd PF12329.3 gi|55379886|ref|YP_137736.1| - 0.032 14.0 4.3 0.032 14.0 3.0 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding FliD_C PF07195.7 gi|55379886|ref|YP_137736.1| - 0.038 13.2 0.7 0.053 12.8 0.5 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus OmpH PF03938.9 gi|55379886|ref|YP_137736.1| - 0.044 13.7 13.0 0.065 13.1 9.0 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_13 PF13166.1 gi|55379886|ref|YP_137736.1| - 0.049 12.0 2.3 0.054 11.9 1.6 1.1 1 0 0 1 1 1 0 AAA domain Cluap1 PF10234.4 gi|55379886|ref|YP_137736.1| - 0.053 12.7 4.3 0.08 12.1 3.0 1.4 1 0 0 1 1 1 0 Clusterin-associated protein-1 Surfac_D-trimer PF09006.6 gi|55379886|ref|YP_137736.1| - 0.074 12.7 2.7 1.8 8.3 0.9 2.4 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation FH2 PF02181.18 gi|55379886|ref|YP_137736.1| - 0.082 11.7 3.3 0.11 11.3 2.3 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF812 PF05667.6 gi|55379886|ref|YP_137736.1| - 0.089 11.2 13.0 0.34 9.3 9.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) TBPIP PF07106.8 gi|55379886|ref|YP_137736.1| - 0.11 12.0 5.4 0.19 11.2 3.7 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|55379886|ref|YP_137736.1| - 0.11 12.7 2.9 0.61 10.3 2.0 2.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Herpes_UL6 PF01763.11 gi|55379886|ref|YP_137736.1| - 0.16 10.1 2.9 0.19 9.8 2.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF3373 PF11853.3 gi|55379886|ref|YP_137736.1| - 0.18 10.3 0.6 0.18 10.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) ISG65-75 PF11727.3 gi|55379886|ref|YP_137736.1| - 0.23 10.4 3.6 0.35 9.8 2.5 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF2317 PF10079.4 gi|55379886|ref|YP_137736.1| - 0.26 9.8 4.5 0.34 9.4 3.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) APG6 PF04111.7 gi|55379886|ref|YP_137736.1| - 0.26 10.2 7.8 0.33 9.9 5.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|55379886|ref|YP_137736.1| - 0.27 11.3 4.8 0.98 9.5 3.2 1.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family VitD-bind_III PF09164.5 gi|55379886|ref|YP_137736.1| - 0.29 10.7 1.0 0.71 9.5 0.7 1.6 1 0 0 1 1 1 0 Vitamin D binding protein, domain III Macoilin PF09726.4 gi|55379886|ref|YP_137736.1| - 0.3 9.3 8.9 0.33 9.1 6.1 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF4250 PF14056.1 gi|55379886|ref|YP_137736.1| - 0.32 10.7 2.0 0.28 10.9 0.3 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4250) Phage_GP20 PF06810.6 gi|55379886|ref|YP_137736.1| - 0.33 10.3 13.0 0.017 14.5 5.3 1.7 2 0 0 2 2 1 0 Phage minor structural protein GP20 CENP-Q PF13094.1 gi|55379886|ref|YP_137736.1| - 0.51 10.3 12.0 0.65 10.0 7.6 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3584 PF12128.3 gi|55379886|ref|YP_137736.1| - 0.63 7.3 15.3 0.072 10.4 7.7 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) FemAB PF02388.11 gi|55379886|ref|YP_137736.1| - 0.84 8.2 4.4 1.2 7.7 3.1 1.1 1 0 0 1 1 1 0 FemAB family TarH PF02203.10 gi|55379886|ref|YP_137736.1| - 1.2 8.9 5.7 14 5.4 4.0 2.2 1 1 1 2 2 2 0 Tar ligand binding domain homologue DUF1423 PF07227.6 gi|55379886|ref|YP_137736.1| - 1.4 7.4 7.7 1.7 7.2 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) Bap31 PF05529.7 gi|55379886|ref|YP_137736.1| - 1.7 8.0 4.5 3.4 7.0 3.0 1.7 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like FUSC PF04632.7 gi|55379886|ref|YP_137736.1| - 1.9 6.8 6.6 1.7 7.0 3.5 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family Pox_A_type_inc PF04508.7 gi|55379886|ref|YP_137736.1| - 2.3 8.1 10.9 2.7 7.9 0.2 3.7 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat PhoU PF01895.14 gi|55379886|ref|YP_137736.1| - 2.9 8.3 10.8 6.9 7.2 5.7 2.6 2 1 1 3 3 3 0 PhoU domain DivIC PF04977.10 gi|55379886|ref|YP_137736.1| - 3.4 7.2 8.4 17 4.9 0.1 2.5 1 1 1 2 2 2 0 Septum formation initiator CorA PF01544.13 gi|55379886|ref|YP_137736.1| - 3.9 6.4 7.6 6 5.8 5.2 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|55379886|ref|YP_137736.1| - 4.2 6.9 10.7 6.9 6.2 7.4 1.5 1 1 0 1 1 1 0 Mnd1 family TruB_N PF01509.13 gi|55379888|ref|YP_137738.1| - 9.4e-22 77.7 0.1 8.6e-13 48.6 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|55379888|ref|YP_137738.1| - 2.3e-08 33.8 0.0 4.4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|55379888|ref|YP_137738.1| - 0.0082 15.8 0.1 0.019 14.6 0.1 1.6 1 1 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|55379889|ref|YP_137739.1| - 3.9e-20 72.5 0.5 1.5e-18 67.3 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|55379889|ref|YP_137739.1| - 3.3e-17 63.0 0.0 4.4e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55379889|ref|YP_137739.1| - 7.4e-16 59.0 0.6 1.5e-15 58.0 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55379889|ref|YP_137739.1| - 4e-10 39.7 0.2 2.9e-08 33.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|55379889|ref|YP_137739.1| - 6.2e-08 32.6 0.3 1.9e-07 31.1 0.2 1.7 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|55379889|ref|YP_137739.1| - 7.3e-06 25.9 0.0 1.3e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|55379889|ref|YP_137739.1| - 2.3e-05 24.4 0.1 3.2e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|55379889|ref|YP_137739.1| - 0.00018 21.1 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|55379889|ref|YP_137739.1| - 0.00038 20.4 0.3 0.00089 19.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55379889|ref|YP_137739.1| - 0.00095 19.3 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|55379889|ref|YP_137739.1| - 0.0015 18.0 0.5 0.002 17.5 0.3 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.24 gi|55379889|ref|YP_137739.1| - 0.0016 18.6 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|55379889|ref|YP_137739.1| - 0.0021 18.2 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase PRK PF00485.13 gi|55379889|ref|YP_137739.1| - 0.0033 17.0 0.1 0.015 14.8 0.0 2.0 2 1 1 3 3 3 1 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.1 gi|55379889|ref|YP_137739.1| - 0.0041 16.7 0.4 0.029 13.9 0.1 2.0 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|55379889|ref|YP_137739.1| - 0.0087 16.3 0.0 0.011 15.9 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|55379889|ref|YP_137739.1| - 0.012 15.9 0.0 0.016 15.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|55379889|ref|YP_137739.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|55379889|ref|YP_137739.1| - 0.013 14.5 0.0 0.11 11.5 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.5 gi|55379889|ref|YP_137739.1| - 0.013 14.6 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|55379889|ref|YP_137739.1| - 0.014 15.1 0.0 0.034 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CoaE PF01121.15 gi|55379889|ref|YP_137739.1| - 0.015 14.6 0.1 0.094 12.1 0.0 1.9 1 1 0 2 2 2 0 Dephospho-CoA kinase T2SE PF00437.15 gi|55379889|ref|YP_137739.1| - 0.016 14.1 0.0 0.029 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|55379889|ref|YP_137739.1| - 0.022 14.2 0.1 0.052 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|55379889|ref|YP_137739.1| - 0.028 13.8 0.9 0.061 12.7 0.5 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|55379889|ref|YP_137739.1| - 0.029 14.0 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.12 gi|55379889|ref|YP_137739.1| - 0.034 13.7 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|55379889|ref|YP_137739.1| - 0.035 13.5 0.1 0.066 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|55379889|ref|YP_137739.1| - 0.036 13.7 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CobU PF02283.11 gi|55379889|ref|YP_137739.1| - 0.037 13.4 0.2 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Viral_helicase1 PF01443.13 gi|55379889|ref|YP_137739.1| - 0.05 13.1 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Thymidylate_kin PF02223.12 gi|55379889|ref|YP_137739.1| - 0.05 12.9 0.3 1.4 8.2 0.0 2.3 1 1 0 2 2 2 0 Thymidylate kinase NB-ARC PF00931.17 gi|55379889|ref|YP_137739.1| - 0.061 12.1 0.0 0.078 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|55379889|ref|YP_137739.1| - 0.077 12.8 0.0 0.16 11.8 0.0 1.7 2 1 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|55379889|ref|YP_137739.1| - 0.094 12.2 0.2 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|55379889|ref|YP_137739.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) UPF0079 PF02367.12 gi|55379889|ref|YP_137739.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 APS_kinase PF01583.15 gi|55379889|ref|YP_137739.1| - 0.11 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.12 gi|55379889|ref|YP_137739.1| - 0.27 11.0 1.4 2 8.1 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function DUF87 DUF106 PF01956.11 gi|55379890|ref|YP_137740.1| - 3.1e-43 147.1 0.4 3.8e-43 146.9 0.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|55379890|ref|YP_137740.1| - 0.00014 21.5 0.6 0.00032 20.4 0.3 1.7 1 1 1 2 2 2 1 60Kd inner membrane protein Phage_Gp23 PF10669.4 gi|55379890|ref|YP_137740.1| - 0.00072 19.6 1.1 0.0011 19.0 0.8 1.2 1 0 0 1 1 1 1 Protein gp23 (Bacteriophage A118) DUF3512 PF12024.3 gi|55379890|ref|YP_137740.1| - 0.2 10.9 2.6 0.36 10.0 1.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3512) SPT6_acidic PF14632.1 gi|55379890|ref|YP_137740.1| - 1.6 8.9 11.6 0.22 11.7 2.8 2.2 2 0 0 2 2 2 0 Acidic N-terminal SPT6 ADK PF00406.17 gi|55379891|ref|YP_137741.1| - 7e-42 142.8 0.0 8.6e-42 142.5 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|55379891|ref|YP_137741.1| - 1.7e-17 62.8 5.0 2.9e-17 62.0 3.5 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|55379891|ref|YP_137741.1| - 1e-12 48.9 0.4 2.8e-12 47.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|55379891|ref|YP_137741.1| - 4.7e-08 33.0 0.0 8.3e-08 32.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|55379891|ref|YP_137741.1| - 2.1e-07 31.2 0.0 4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|55379891|ref|YP_137741.1| - 0.0026 16.8 0.0 0.0046 16.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DZR PF12773.2 gi|55379891|ref|YP_137741.1| - 0.0091 15.7 0.4 0.018 14.8 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|55379891|ref|YP_137741.1| - 0.0097 15.8 0.2 0.42 10.5 0.0 2.2 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme RuvB_N PF05496.7 gi|55379891|ref|YP_137741.1| - 0.018 14.0 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus zf-IS66 PF13005.2 gi|55379891|ref|YP_137741.1| - 0.029 14.3 0.6 0.82 9.6 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 SRP54 PF00448.17 gi|55379891|ref|YP_137741.1| - 0.03 13.7 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|55379891|ref|YP_137741.1| - 0.03 14.0 0.1 0.08 12.6 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain AAA_28 PF13521.1 gi|55379891|ref|YP_137741.1| - 0.045 13.7 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain zf-C4_Topoisom PF01396.14 gi|55379891|ref|YP_137741.1| - 0.058 12.9 0.5 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|55379891|ref|YP_137741.1| - 0.065 12.5 2.4 0.14 11.4 1.7 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|55379891|ref|YP_137741.1| - 0.069 12.8 0.5 0.12 12.0 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_5 PF07728.9 gi|55379891|ref|YP_137741.1| - 0.071 12.8 0.0 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF1451 PF07295.6 gi|55379891|ref|YP_137741.1| - 0.076 12.7 0.3 0.13 12.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Nudix_N_2 PF14803.1 gi|55379891|ref|YP_137741.1| - 0.078 12.6 1.7 4.9 6.9 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal SKI PF01202.17 gi|55379891|ref|YP_137741.1| - 0.095 12.5 0.2 0.44 10.3 0.2 2.0 1 1 0 1 1 1 0 Shikimate kinase DUF3107 PF11305.3 gi|55379891|ref|YP_137741.1| - 0.12 12.2 0.0 5 7.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3107) PduV-EutP PF10662.4 gi|55379891|ref|YP_137741.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Prok-RING_1 PF14446.1 gi|55379891|ref|YP_137741.1| - 0.18 11.5 5.3 0.72 9.6 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|55379891|ref|YP_137741.1| - 0.24 11.3 1.1 0.48 10.4 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|55379891|ref|YP_137741.1| - 0.3 10.5 4.0 4.9 6.7 0.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain AhpC-TSA PF00578.16 gi|55379892|ref|YP_137742.1| - 4.4e-28 97.4 0.0 5.5e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55379892|ref|YP_137742.1| - 5.5e-16 58.4 0.0 7.1e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|55379892|ref|YP_137742.1| - 3.1e-06 27.0 0.0 4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HATPase_c PF02518.21 gi|55379893|ref|YP_137743.1| - 1.6e-12 47.1 0.0 3.1e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|55379893|ref|YP_137743.1| - 2.3e-12 47.1 0.1 7.5e-12 45.5 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|55379893|ref|YP_137743.1| - 1.9e-07 30.8 0.0 3.7e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|55379893|ref|YP_137743.1| - 1.3e-06 28.3 0.0 2.6e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|55379893|ref|YP_137743.1| - 7.8e-06 25.8 0.0 1.9e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|55379893|ref|YP_137743.1| - 2.7e-05 23.9 0.0 7.4e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55379893|ref|YP_137743.1| - 3.8e-05 23.3 0.0 9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|55379893|ref|YP_137743.1| - 0.0002 21.2 0.6 0.0006 19.7 0.4 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|55379894|ref|YP_137744.1| - 5.2e-18 64.7 0.0 9.8e-18 63.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55379894|ref|YP_137744.1| - 8.1e-07 28.8 0.0 2.2e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|55379894|ref|YP_137744.1| - 4.9e-05 23.0 0.0 0.00051 19.8 0.0 2.6 1 1 1 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|55379894|ref|YP_137744.1| - 0.0002 21.0 0.0 0.00038 20.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55379894|ref|YP_137744.1| - 0.00049 20.1 0.6 0.016 15.2 0.4 3.0 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|55379894|ref|YP_137744.1| - 0.0013 18.5 0.0 0.0046 16.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold Gp_dh_C PF02800.15 gi|55379894|ref|YP_137744.1| - 0.036 13.5 0.1 0.1 12.0 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GHMP_kinases_N PF00288.21 gi|55379895|ref|YP_137745.1| - 2.1e-14 53.2 0.7 5.7e-14 51.9 0.5 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|55379895|ref|YP_137745.1| - 8.9e-09 35.4 0.0 2e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Amino_oxidase PF01593.19 gi|55379896|ref|YP_137746.1| - 4.8e-21 75.3 0.9 2.2e-19 69.9 0.6 2.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|55379896|ref|YP_137746.1| - 2.6e-15 56.2 0.1 7.5e-15 54.7 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|55379896|ref|YP_137746.1| - 4.3e-14 52.1 0.6 1.3e-07 30.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55379896|ref|YP_137746.1| - 5.6e-06 25.4 1.7 1e-05 24.5 1.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|55379896|ref|YP_137746.1| - 1.6e-05 24.8 0.1 0.00018 21.4 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|55379896|ref|YP_137746.1| - 0.00024 20.9 0.3 0.037 13.8 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|55379896|ref|YP_137746.1| - 0.00028 21.2 0.1 0.0021 18.4 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55379896|ref|YP_137746.1| - 0.00081 18.5 0.6 0.0056 15.8 0.3 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|55379896|ref|YP_137746.1| - 0.00084 18.3 0.2 0.0017 17.2 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|55379896|ref|YP_137746.1| - 0.0013 17.2 1.1 0.0016 16.9 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|55379896|ref|YP_137746.1| - 0.0014 17.8 0.1 0.0028 16.7 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|55379896|ref|YP_137746.1| - 0.0017 18.4 0.4 0.0077 16.3 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|55379896|ref|YP_137746.1| - 0.0077 15.1 0.0 0.072 11.9 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FMO-like PF00743.14 gi|55379896|ref|YP_137746.1| - 0.0083 14.3 0.0 0.012 13.8 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like 3HCDH_N PF02737.13 gi|55379896|ref|YP_137746.1| - 0.018 14.7 0.3 0.05 13.2 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|55379896|ref|YP_137746.1| - 0.019 14.0 0.4 0.035 13.1 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.1 gi|55379896|ref|YP_137746.1| - 0.04 13.9 1.0 0.22 11.5 0.0 2.1 2 0 0 2 2 2 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|55379896|ref|YP_137746.1| - 0.099 12.3 0.2 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|55379896|ref|YP_137746.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|55379896|ref|YP_137746.1| - 0.22 11.9 0.9 1.4 9.3 0.2 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Mpp10 PF04006.7 gi|55379898|ref|YP_137747.1| - 0.11 10.8 0.6 0.14 10.5 0.4 1.1 1 0 0 1 1 1 0 Mpp10 protein Pyr_redox_2 PF07992.9 gi|55379897|ref|YP_137748.1| - 3.4e-32 111.9 0.2 4.5e-32 111.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55379897|ref|YP_137748.1| - 3.5e-10 40.1 0.3 2.8e-06 27.6 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55379897|ref|YP_137748.1| - 0.0002 20.3 4.0 1.3 7.8 0.0 3.6 4 0 0 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|55379897|ref|YP_137748.1| - 0.00028 19.4 0.0 0.073 11.5 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|55379897|ref|YP_137748.1| - 0.0065 16.5 3.4 0.018 15.1 0.5 2.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55379897|ref|YP_137748.1| - 0.0073 16.3 2.0 0.27 11.2 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Reductase_C PF14759.1 gi|55379897|ref|YP_137748.1| - 0.017 15.3 0.0 0.075 13.3 0.0 2.0 2 0 0 2 2 2 0 Reductase C-terminal Lycopene_cycl PF05834.7 gi|55379897|ref|YP_137748.1| - 0.05 12.5 1.1 0.98 8.2 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|55379897|ref|YP_137748.1| - 0.084 12.6 3.5 2.6 7.8 0.0 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|55379897|ref|YP_137748.1| - 0.23 10.2 7.2 1.4 7.7 0.1 3.6 3 1 0 4 4 4 0 FAD binding domain Glyoxalase_2 PF12681.2 gi|55379897|ref|YP_137748.1| - 0.93 10.1 3.9 1.3 9.6 0.3 2.7 2 1 1 3 3 3 0 Glyoxalase-like domain GPDPase_memb PF10110.4 gi|55379901|ref|YP_137751.1| - 0.0087 15.4 1.2 0.02 14.2 0.8 1.6 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|55379901|ref|YP_137751.1| - 0.0098 15.3 11.6 0.015 14.7 8.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) DUF4191 PF13829.1 gi|55379901|ref|YP_137751.1| - 5.6 5.9 10.4 6.9 5.7 2.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) ETF PF01012.16 gi|55379902|ref|YP_137752.1| - 0.04 13.6 0.0 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DUF4346 PF14251.1 gi|55379904|ref|YP_137754.1| - 0.12 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) CPSase_L_D2 PF02786.12 gi|55379905|ref|YP_137755.1| - 2.1e-93 311.4 0.1 9.9e-58 194.8 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|55379905|ref|YP_137755.1| - 1.4e-44 150.6 0.1 4.2e-22 78.3 0.0 3.0 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|55379905|ref|YP_137755.1| - 4.6e-30 104.7 0.2 1.6e-17 63.8 0.0 3.1 3 0 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|55379905|ref|YP_137755.1| - 1.5e-21 76.4 0.0 2e-13 49.8 0.0 3.7 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|55379905|ref|YP_137755.1| - 2.9e-21 75.4 0.1 3.2e-20 72.1 0.1 2.3 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|55379905|ref|YP_137755.1| - 3.9e-12 45.8 0.0 3.4e-07 29.7 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|55379905|ref|YP_137755.1| - 1.3e-10 40.9 0.0 6.7e-07 28.8 0.0 2.8 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|55379905|ref|YP_137755.1| - 1.6e-09 37.8 0.3 0.00049 19.9 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Glyco_transf_9 PF01075.12 gi|55379905|ref|YP_137755.1| - 0.16 11.1 0.0 21 4.2 0.0 2.9 3 0 0 3 3 3 0 Glycosyltransferase family 9 (heptosyltransferase) PAS_4 PF08448.5 gi|55379906|ref|YP_137756.1| - 1.6e-50 169.7 13.2 6.9e-20 71.1 0.1 6.1 5 1 1 6 6 6 4 PAS fold PAS_9 PF13426.1 gi|55379906|ref|YP_137756.1| - 1.1e-35 122.1 3.8 1.4e-09 38.2 0.0 4.8 5 0 0 5 5 4 4 PAS domain PAS_3 PF08447.6 gi|55379906|ref|YP_137756.1| - 1.4e-32 111.6 1.6 9.2e-25 86.5 0.2 4.9 4 0 0 4 4 4 2 PAS fold PAS PF00989.19 gi|55379906|ref|YP_137756.1| - 1.1e-23 83.1 2.0 1.3e-08 34.6 0.0 5.1 4 1 0 4 4 4 4 PAS fold Response_reg PF00072.19 gi|55379906|ref|YP_137756.1| - 1.4e-19 70.1 0.0 7.5e-19 67.8 0.0 2.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55379906|ref|YP_137756.1| - 1.6e-19 69.6 0.0 3.4e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55379906|ref|YP_137756.1| - 1.5e-17 62.7 0.1 0.00021 21.0 0.0 5.1 4 0 0 4 4 4 3 PAS domain HisKA PF00512.20 gi|55379906|ref|YP_137756.1| - 3.4e-14 52.5 0.7 2.5e-13 49.7 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|55379906|ref|YP_137756.1| - 1.1e-07 32.4 3.3 4.7e-06 27.1 0.5 3.2 2 1 0 2 2 2 1 GAF domain GAF PF01590.21 gi|55379906|ref|YP_137756.1| - 9.5e-06 25.8 1.5 3.2e-05 24.1 0.4 2.4 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55379906|ref|YP_137756.1| - 1.5e-05 25.0 0.7 6.6e-05 23.0 0.2 2.4 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.10 gi|55379906|ref|YP_137756.1| - 1.9e-05 24.6 2.1 9.7e-05 22.4 0.0 3.0 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_11 PF14598.1 gi|55379906|ref|YP_137756.1| - 0.0029 17.5 0.9 0.04 13.8 0.0 2.9 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|55379906|ref|YP_137756.1| - 0.0055 16.3 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|55379906|ref|YP_137756.1| - 0.073 12.7 0.0 16 5.2 0.0 2.8 3 0 0 3 3 3 0 GHKL domain PAS_7 PF12860.2 gi|55379906|ref|YP_137756.1| - 0.1 12.5 3.4 1 9.4 0.1 4.2 5 1 0 5 5 5 0 PAS fold bPH_3 PF14470.1 gi|55379907|ref|YP_137757.1| - 0.0023 18.1 0.0 0.0032 17.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain CPSase_sm_chain PF00988.17 gi|55379908|ref|YP_137758.1| - 1e-34 118.8 0.0 3.2e-34 117.2 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|55379908|ref|YP_137758.1| - 4.3e-34 117.6 0.0 5.7e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55379908|ref|YP_137758.1| - 3.1e-06 26.7 0.1 0.00069 19.1 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|55379908|ref|YP_137758.1| - 0.0056 16.1 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family Pro-kuma_activ PF09286.6 gi|55379908|ref|YP_137758.1| - 0.0094 15.9 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain HTH_AsnC-type PF13404.1 gi|55379909|ref|YP_137759.1| - 1.9e-18 65.7 1.5 1.7e-17 62.6 0.8 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|55379909|ref|YP_137759.1| - 8.4e-17 60.2 0.0 1.8e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|55379909|ref|YP_137759.1| - 1.3e-10 40.8 1.2 2e-10 40.1 0.8 1.3 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|55379909|ref|YP_137759.1| - 5.2e-06 26.1 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|55379909|ref|YP_137759.1| - 2.6e-05 23.7 0.2 5.2e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|55379909|ref|YP_137759.1| - 0.00014 21.2 0.0 0.00027 20.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|55379909|ref|YP_137759.1| - 0.00031 20.3 0.0 0.00057 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|55379909|ref|YP_137759.1| - 0.00082 18.6 0.1 0.0014 17.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|55379909|ref|YP_137759.1| - 0.0012 17.9 1.3 0.0019 17.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|55379909|ref|YP_137759.1| - 0.0012 18.3 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|55379909|ref|YP_137759.1| - 0.0012 19.0 0.0 0.0028 17.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|55379909|ref|YP_137759.1| - 0.0013 18.2 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|55379909|ref|YP_137759.1| - 0.0016 17.9 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|55379909|ref|YP_137759.1| - 0.0021 17.7 0.1 0.0089 15.7 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB NapD PF03927.8 gi|55379909|ref|YP_137759.1| - 0.0027 17.5 1.1 0.0049 16.6 0.8 1.4 1 0 0 1 1 1 1 NapD protein HTH_DeoR PF08220.7 gi|55379909|ref|YP_137759.1| - 0.0059 16.1 0.2 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|55379909|ref|YP_137759.1| - 0.016 14.6 0.0 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.16 gi|55379909|ref|YP_137759.1| - 0.019 14.3 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF746 PF05344.6 gi|55379909|ref|YP_137759.1| - 0.022 14.2 0.1 0.096 12.2 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) PaaX PF07848.7 gi|55379909|ref|YP_137759.1| - 0.027 14.4 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein GYD PF08734.6 gi|55379909|ref|YP_137759.1| - 0.035 13.8 0.6 0.15 11.7 0.0 2.2 2 1 1 3 3 3 0 GYD domain HTH_38 PF13936.1 gi|55379909|ref|YP_137759.1| - 0.041 13.4 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|55379909|ref|YP_137759.1| - 0.089 12.9 0.1 0.22 11.7 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein GerE PF00196.14 gi|55379909|ref|YP_137759.1| - 0.097 11.9 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|55379909|ref|YP_137759.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|55379909|ref|YP_137759.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.11 gi|55379909|ref|YP_137759.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain YadA_stalk PF05662.9 gi|55379909|ref|YP_137759.1| - 0.55 10.1 2.7 1.7 8.5 1.8 1.8 1 0 0 1 1 1 0 Coiled stalk of trimeric autotransporter adhesin MS_channel PF00924.13 gi|55379911|ref|YP_137761.1| - 1.6e-38 132.0 0.4 2.1e-38 131.7 0.2 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel SseC PF04888.7 gi|55379911|ref|YP_137761.1| - 4 6.6 8.2 7.2 5.8 5.7 1.4 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family UPF0118 PF01594.11 gi|55379912|ref|YP_137762.1| - 1.7e-24 86.4 31.3 2.2e-24 86.0 21.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 HATPase_c PF02518.21 gi|55379913|ref|YP_137763.1| - 2.8e-22 78.5 0.0 4.6e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|55379913|ref|YP_137763.1| - 3e-08 33.4 0.1 6.7e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|55379913|ref|YP_137763.1| - 3.8e-05 23.3 0.0 7.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.1 gi|55379913|ref|YP_137763.1| - 0.00018 20.9 0.5 0.00037 19.9 0.4 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain GAF_2 PF13185.1 gi|55379913|ref|YP_137763.1| - 0.0013 19.2 0.3 0.0031 18.0 0.1 1.7 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|55379913|ref|YP_137763.1| - 0.0037 17.2 0.5 0.0037 17.2 0.3 2.2 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|55379913|ref|YP_137763.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAP_central PF04928.12 gi|55379913|ref|YP_137763.1| - 0.12 11.1 0.1 0.17 10.7 0.1 1.2 1 0 0 1 1 1 0 Poly(A) polymerase central domain DUF1998 PF09369.5 gi|55379914|ref|YP_137764.1| - 5.2e-18 65.3 0.1 1.9e-17 63.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|55379914|ref|YP_137764.1| - 4.3e-07 29.7 0.0 9.3e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|55379914|ref|YP_137764.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF4136 PF13590.1 gi|55379914|ref|YP_137764.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4136) ABC_tran PF00005.22 gi|55379915|ref|YP_137765.1| - 1.7e-31 109.3 0.0 6e-31 107.5 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|55379915|ref|YP_137765.1| - 1.2e-08 35.3 0.0 0.00068 19.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55379915|ref|YP_137765.1| - 1.7e-06 27.4 0.1 9.8e-05 21.6 0.1 2.6 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|55379915|ref|YP_137765.1| - 3.7e-05 23.1 0.6 0.002 17.6 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|55379915|ref|YP_137765.1| - 0.0001 22.7 0.0 0.00017 22.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|55379915|ref|YP_137765.1| - 0.00018 20.6 0.1 0.0006 18.9 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|55379915|ref|YP_137765.1| - 0.001 19.1 0.4 0.0027 17.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|55379915|ref|YP_137765.1| - 0.0073 15.9 8.1 0.0093 15.5 0.1 2.8 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|55379915|ref|YP_137765.1| - 0.0073 16.4 0.1 0.03 14.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|55379915|ref|YP_137765.1| - 0.0081 15.3 0.0 0.066 12.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|55379915|ref|YP_137765.1| - 0.011 15.9 0.5 0.09 12.9 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|55379915|ref|YP_137765.1| - 0.011 15.5 1.1 0.03 14.1 0.3 2.2 2 1 1 3 3 3 0 AAA domain AAA_15 PF13175.1 gi|55379915|ref|YP_137765.1| - 0.025 13.6 0.0 0.33 9.9 0.0 2.2 3 0 0 3 3 3 0 AAA ATPase domain AAA_17 PF13207.1 gi|55379915|ref|YP_137765.1| - 0.028 15.2 0.0 0.087 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|55379915|ref|YP_137765.1| - 0.095 12.3 0.3 0.22 11.1 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 F420_oxidored PF03807.12 gi|55379915|ref|YP_137765.1| - 0.13 12.7 1.1 0.33 11.4 0.8 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Thymidylate_kin PF02223.12 gi|55379915|ref|YP_137765.1| - 0.17 11.2 0.0 0.37 10.1 0.0 1.6 1 1 0 1 1 1 0 Thymidylate kinase NAD_binding_7 PF13241.1 gi|55379915|ref|YP_137765.1| - 4.5 7.5 7.7 3.9 7.7 1.9 2.9 2 2 1 3 3 3 0 Putative NAD(P)-binding FecCD PF01032.13 gi|55379917|ref|YP_137766.1| - 3.9e-90 301.8 32.5 7.1e-90 300.9 22.5 1.4 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|55379917|ref|YP_137766.1| - 2e-06 27.3 14.7 2e-06 27.3 10.2 1.8 1 1 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|55379916|ref|YP_137767.1| - 2e-28 99.1 0.7 2.7e-28 98.7 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein 5-FTHF_cyc-lig PF01812.15 gi|55379918|ref|YP_137768.1| - 1.2e-27 96.8 0.0 1.9e-27 96.2 0.0 1.3 1 1 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family HATPase_c PF02518.21 gi|55379919|ref|YP_137769.1| - 1e-20 73.5 0.3 2.7e-20 72.1 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|55379919|ref|YP_137769.1| - 1e-13 51.2 0.0 2.2e-13 50.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|55379919|ref|YP_137769.1| - 6.8e-13 48.4 0.8 2e-12 46.8 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|55379919|ref|YP_137769.1| - 2e-11 43.8 0.1 1.4e-10 41.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|55379919|ref|YP_137769.1| - 1.7e-09 37.8 0.0 4.7e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|55379919|ref|YP_137769.1| - 7.4e-09 35.9 0.1 2.4e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|55379919|ref|YP_137769.1| - 7.9e-07 29.4 0.0 1.2e-05 25.6 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.1 gi|55379919|ref|YP_137769.1| - 3.7e-05 24.2 0.0 0.00014 22.3 0.0 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|55379919|ref|YP_137769.1| - 0.00014 21.5 0.2 0.00067 19.4 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.10 gi|55379919|ref|YP_137769.1| - 0.00022 21.2 0.0 0.00056 19.9 0.0 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_8 PF13188.1 gi|55379919|ref|YP_137769.1| - 0.014 15.2 0.3 0.065 13.1 0.0 2.3 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.1 gi|55379919|ref|YP_137769.1| - 0.024 14.2 0.0 0.069 12.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|55379919|ref|YP_137769.1| - 0.045 13.5 0.0 0.18 11.5 0.0 2.0 1 1 0 1 1 1 0 PAS fold Pyr_redox_2 PF07992.9 gi|55379920|ref|YP_137770.1| - 2.5e-22 79.7 0.1 3.8e-22 79.1 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|55379920|ref|YP_137770.1| - 1.2e-14 54.2 0.0 3e-14 52.9 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|55379920|ref|YP_137770.1| - 2.8e-09 37.3 0.9 1.7e-07 31.5 0.5 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55379920|ref|YP_137770.1| - 4.6e-08 33.3 2.0 8.3e-08 32.5 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|55379920|ref|YP_137770.1| - 0.00013 21.9 1.3 0.049 13.6 0.0 3.4 3 0 0 3 3 3 1 TrkA-N domain Saccharop_dh PF03435.13 gi|55379920|ref|YP_137770.1| - 0.00031 19.8 0.1 0.59 9.0 0.1 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase NAD_binding_9 PF13454.1 gi|55379920|ref|YP_137770.1| - 0.0015 18.3 1.6 1.3 8.7 1.1 3.2 2 1 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|55379920|ref|YP_137770.1| - 0.0023 16.9 0.4 1.2 8.0 0.0 2.4 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|55379920|ref|YP_137770.1| - 0.01 14.7 1.1 0.34 9.7 0.0 2.4 2 1 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|55379920|ref|YP_137770.1| - 0.01 15.6 3.9 0.35 10.6 0.1 2.9 3 0 0 3 3 3 0 ThiF family NAD_binding_10 PF13460.1 gi|55379920|ref|YP_137770.1| - 0.026 14.5 0.3 11 5.9 0.2 3.4 4 0 0 4 4 4 0 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|55379920|ref|YP_137770.1| - 0.11 12.7 1.1 36 4.6 0.0 3.3 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain DAO PF01266.19 gi|55379920|ref|YP_137770.1| - 1.1 8.0 7.7 2.7 6.8 1.4 3.0 2 1 0 3 3 3 0 FAD dependent oxidoreductase MMPL PF03176.10 gi|55379921|ref|YP_137771.1| - 4.6e-25 88.0 27.3 6.4e-14 51.4 5.5 2.7 3 0 0 3 3 3 2 MMPL family Patched PF02460.13 gi|55379921|ref|YP_137771.1| - 2.4e-15 55.5 21.5 4.3e-10 38.1 6.3 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.3 gi|55379921|ref|YP_137771.1| - 7.7e-15 54.6 10.8 2.9e-08 33.3 1.7 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|55379921|ref|YP_137771.1| - 1.7e-05 24.1 22.4 0.0033 16.6 4.9 2.4 2 0 0 2 2 2 2 Protein export membrane protein Imm1 PF14430.1 gi|55379921|ref|YP_137771.1| - 0.16 12.1 1.2 1.1 9.3 0.0 2.8 3 0 0 3 3 3 0 Immunity protein Imm1 CARDB PF07705.6 gi|55379922|ref|YP_137772.1| - 3.6e-15 55.8 31.1 0.0044 17.0 0.2 6.5 5 2 1 6 6 6 5 CARDB NPCBM_assoc PF10633.4 gi|55379922|ref|YP_137772.1| - 2.2e-13 50.0 28.3 2.6e-05 24.1 0.1 8.0 6 1 1 7 7 7 5 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|55379922|ref|YP_137772.1| - 1.7e-08 34.4 0.2 0.22 11.5 0.0 4.6 4 0 0 4 4 4 3 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|55379922|ref|YP_137772.1| - 2.2e-05 24.3 33.4 9.5e-05 22.3 3.6 5.9 6 0 0 6 6 6 3 Domain of unknown function DUF11 Fn3-like PF14310.1 gi|55379922|ref|YP_137772.1| - 0.00015 21.6 9.0 1.1 9.2 0.0 6.8 8 0 0 8 8 8 1 Fibronectin type III-like domain Arrestin_C PF02752.17 gi|55379922|ref|YP_137772.1| - 0.0052 16.8 0.1 21 5.2 0.0 4.1 3 2 0 4 4 4 0 Arrestin (or S-antigen), C-terminal domain DUF2393 PF09624.5 gi|55379922|ref|YP_137772.1| - 0.15 11.5 5.2 5.2 6.5 0.0 4.5 5 0 0 5 5 5 0 Protein of unknown function (DUF2393) PHTB1_C PF14728.1 gi|55379922|ref|YP_137772.1| - 0.28 9.9 0.1 5.3 5.7 0.0 2.5 3 0 0 3 3 3 0 PTHB1 C-terminus TetR_N PF00440.18 gi|55379923|ref|YP_137773.1| - 4.2e-16 58.3 0.2 7e-16 57.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|55379923|ref|YP_137773.1| - 4.4e-12 46.0 0.0 8.9e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor UPF0122 PF04297.9 gi|55379923|ref|YP_137773.1| - 0.019 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.1 gi|55379923|ref|YP_137773.1| - 0.02 14.5 0.0 0.056 13.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.10 gi|55379923|ref|YP_137773.1| - 0.028 14.2 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_20 PF12840.2 gi|55379923|ref|YP_137773.1| - 0.044 13.5 0.0 0.089 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|55379923|ref|YP_137773.1| - 0.055 13.7 0.1 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_38 PF13936.1 gi|55379923|ref|YP_137773.1| - 0.063 12.8 0.1 0.36 10.4 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|55379923|ref|YP_137773.1| - 0.07 13.3 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HalX PF08663.5 gi|55379924|ref|YP_137774.1| - 5.6e-21 74.3 7.9 2.4e-20 72.2 5.6 1.8 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|55379924|ref|YP_137774.1| - 2.1e-05 24.4 0.0 3.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain IncA PF04156.9 gi|55379924|ref|YP_137774.1| - 0.21 11.1 2.0 0.24 10.9 1.4 1.1 1 0 0 1 1 1 0 IncA protein DDE_Tnp_IS240 PF13610.1 gi|55379925|ref|YP_137775.1| - 1.1e-14 54.5 0.1 1.4e-14 54.2 0.1 1.1 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|55379925|ref|YP_137775.1| - 2.5e-06 27.5 0.1 6.6e-06 26.2 0.1 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|55379925|ref|YP_137775.1| - 0.00087 18.5 0.2 0.0034 16.6 0.1 2.0 1 1 0 1 1 1 1 Transposase IS66 family PAS_4 PF08448.5 gi|55379926|ref|YP_137776.1| - 0.077 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 PAS fold DUF3098 PF11297.3 gi|55379927|ref|YP_137777.1| - 0.0039 16.8 0.4 0.21 11.3 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3098) DUF2065 PF09838.4 gi|55379927|ref|YP_137777.1| - 0.0042 16.7 4.6 0.0085 15.7 0.7 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2065) NAD_kinase PF01513.16 gi|55379928|ref|YP_137778.1| - 1.8e-38 131.9 0.1 2.2e-38 131.6 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase KaiC PF06745.8 gi|55379929|ref|YP_137779.1| - 1.7e-55 187.5 0.1 2.1e-55 187.3 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|55379929|ref|YP_137779.1| - 3.9e-08 32.9 0.0 6.1e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|55379929|ref|YP_137779.1| - 1.3e-05 23.7 0.1 2.6e-05 22.7 0.1 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|55379929|ref|YP_137779.1| - 0.00011 21.2 0.1 0.0055 15.6 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|55379929|ref|YP_137779.1| - 0.0017 17.5 0.1 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.1 gi|55379929|ref|YP_137779.1| - 0.0098 14.9 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.12 gi|55379929|ref|YP_137779.1| - 0.021 14.2 0.0 0.035 13.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|55379929|ref|YP_137779.1| - 0.028 13.9 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|55379929|ref|YP_137779.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|55379929|ref|YP_137779.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|55379929|ref|YP_137779.1| - 0.15 11.9 0.4 0.24 11.2 0.3 1.7 1 1 0 1 1 1 0 AAA domain DUF4013 PF13197.1 gi|55379930|ref|YP_137780.1| - 1.8e-40 138.0 19.8 1.8e-40 138.0 13.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) EI24 PF07264.6 gi|55379930|ref|YP_137780.1| - 0.0018 17.7 1.3 0.0018 17.7 0.9 2.6 1 1 1 2 2 2 1 Etoposide-induced protein 2.4 (EI24) PRRSV_2b PF07069.6 gi|55379930|ref|YP_137780.1| - 0.46 10.8 0.2 0.46 10.8 0.1 2.6 3 1 0 3 3 3 0 Porcine reproductive and respiratory syndrome virus 2b Usp PF00582.21 gi|55379931|ref|YP_137781.1| - 1.1e-11 45.0 0.6 1.4e-11 44.7 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|55379931|ref|YP_137781.1| - 0.00035 20.3 0.9 0.68 9.6 0.4 2.1 1 1 1 2 2 2 2 Electron transfer flavoprotein domain GFO_IDH_MocA PF01408.17 gi|55379931|ref|YP_137781.1| - 0.02 15.4 0.2 0.035 14.6 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Usp PF00582.21 gi|55379932|ref|YP_137782.1| - 1.1e-35 122.9 1.8 1.2e-35 122.7 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AAA_10 PF12846.2 gi|55379933|ref|YP_137783.1| - 8.8e-21 74.6 0.2 8e-20 71.4 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|55379933|ref|YP_137783.1| - 6.6e-08 32.6 0.0 1.3e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|55379933|ref|YP_137783.1| - 5.5e-07 28.3 0.2 0.00077 17.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|55379933|ref|YP_137783.1| - 0.00013 21.4 0.0 0.035 13.5 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|55379933|ref|YP_137783.1| - 0.017 15.2 0.0 0.079 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|55379933|ref|YP_137783.1| - 0.055 13.2 0.1 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|55379933|ref|YP_137783.1| - 0.057 12.0 0.0 0.086 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|55379933|ref|YP_137783.1| - 0.087 11.7 0.1 0.15 10.8 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF4258 PF14076.1 gi|55379933|ref|YP_137783.1| - 0.22 11.5 0.7 0.8 9.7 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Exo_endo_phos PF03372.18 gi|55379934|ref|YP_137784.1| - 2.3e-15 57.2 5.8 3e-15 56.8 4.1 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|55379934|ref|YP_137784.1| - 1.2e-07 31.3 0.0 2.3e-07 30.4 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase HTH_20 PF12840.2 gi|55379936|ref|YP_137786.1| - 2.4e-10 40.0 0.3 3.6e-10 39.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55379936|ref|YP_137786.1| - 1.8e-07 30.6 0.3 4.2e-07 29.4 0.2 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|55379936|ref|YP_137786.1| - 1.9e-06 27.4 0.0 3.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55379936|ref|YP_137786.1| - 3.9e-06 26.4 0.0 5.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379936|ref|YP_137786.1| - 5.9e-06 25.8 0.1 9.6e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 MarR family FUR PF01475.14 gi|55379936|ref|YP_137786.1| - 1.4e-05 25.0 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_24 PF13412.1 gi|55379936|ref|YP_137786.1| - 1.5e-05 24.2 0.0 2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|55379936|ref|YP_137786.1| - 0.00019 20.9 0.0 0.0003 20.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|55379936|ref|YP_137786.1| - 0.00051 19.6 0.0 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|55379936|ref|YP_137786.1| - 0.0011 18.7 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC PadR PF03551.9 gi|55379936|ref|YP_137786.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Sigma70_r3 PF04539.11 gi|55379936|ref|YP_137786.1| - 0.055 13.3 0.3 0.1 12.5 0.0 1.5 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_AsnC-type PF13404.1 gi|55379936|ref|YP_137786.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain CDKN3 PF05706.7 gi|55379936|ref|YP_137786.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) HTH_29 PF13551.1 gi|55379936|ref|YP_137786.1| - 0.14 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF998 PF06197.8 gi|55379937|ref|YP_137787.1| - 0.0088 15.3 10.0 0.01 15.1 6.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MNHE PF01899.11 gi|55379937|ref|YP_137787.1| - 0.012 15.2 5.3 0.012 15.2 3.1 1.3 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit 7TMR-DISM_7TM PF07695.6 gi|55379937|ref|YP_137787.1| - 0.032 13.9 7.1 0.036 13.7 4.9 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling MerC PF03203.9 gi|55379937|ref|YP_137787.1| - 0.04 14.2 5.4 0.085 13.2 3.8 1.6 1 1 0 1 1 1 0 MerC mercury resistance protein DUF423 PF04241.10 gi|55379937|ref|YP_137787.1| - 0.045 13.6 1.7 0.06 13.2 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF423) VPEP PF07589.6 gi|55379937|ref|YP_137787.1| - 0.13 12.2 1.5 0.13 12.2 1.1 3.4 3 1 0 3 3 3 0 PEP-CTERM motif DUF1129 PF06570.6 gi|55379937|ref|YP_137787.1| - 0.16 11.3 2.5 0.18 11.0 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) PTPS_related PF10131.4 gi|55379937|ref|YP_137787.1| - 1.2 7.1 4.8 1.2 7.1 3.3 1.0 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein CAAD PF14159.1 gi|55379937|ref|YP_137787.1| - 1.4 8.6 5.1 1.2 8.8 1.7 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase YjgP_YjgQ PF03739.9 gi|55379937|ref|YP_137787.1| - 1.6 7.3 5.9 1.8 7.2 4.1 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF202 PF02656.10 gi|55379937|ref|YP_137787.1| - 2 8.6 9.3 1.2e+02 3.0 6.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4131 PF13567.1 gi|55379937|ref|YP_137787.1| - 2 7.7 8.0 2.8 7.3 5.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SdpI PF13630.1 gi|55379937|ref|YP_137787.1| - 2.1 8.1 7.2 0.3 10.8 0.6 2.0 1 1 1 2 2 2 0 SdpI/YhfL protein family Wzy_C PF04932.10 gi|55379937|ref|YP_137787.1| - 2.2 8.0 7.4 3.2 7.5 5.2 1.5 1 1 0 1 1 1 0 O-Antigen ligase DUF485 PF04341.7 gi|55379937|ref|YP_137787.1| - 2.3 7.9 6.8 1.2 8.8 3.1 1.6 1 1 1 2 2 2 0 Protein of unknown function, DUF485 DUF2484 PF10658.4 gi|55379937|ref|YP_137787.1| - 3.7 7.7 7.8 0.46 10.6 1.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2484) DUF2976 PF11190.3 gi|55379937|ref|YP_137787.1| - 5.7 6.5 9.5 9.8 5.7 3.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2976) NurA PF09376.5 gi|55379938|ref|YP_137788.1| - 2.5e-33 115.5 0.0 3.3e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 NurA domain Metalloenzyme PF01676.13 gi|55379940|ref|YP_137790.1| - 1.1e-74 251.0 0.2 1.3e-74 250.8 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|55379940|ref|YP_137790.1| - 2.1e-74 249.6 0.0 3e-74 249.1 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|55379940|ref|YP_137790.1| - 3.4e-05 23.3 0.6 9.9e-05 21.8 0.0 1.9 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|55379940|ref|YP_137790.1| - 0.002 17.3 0.1 0.0071 15.5 0.1 2.0 1 1 0 1 1 1 1 Sulfatase PTS_2-RNA PF01885.11 gi|55379941|ref|YP_137791.1| - 7.2e-39 133.0 0.0 8.8e-39 132.7 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Acetyltransf_1 PF00583.19 gi|55379942|ref|YP_137792.1| - 1.6e-12 47.2 0.0 2.7e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|55379942|ref|YP_137792.1| - 4e-09 36.6 0.0 4.6e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|55379942|ref|YP_137792.1| - 4e-07 30.1 0.0 6.8e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55379942|ref|YP_137792.1| - 5.5e-06 26.4 0.0 9.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|55379942|ref|YP_137792.1| - 0.00023 21.3 0.0 0.00035 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.2 gi|55379942|ref|YP_137792.1| - 0.00045 19.9 0.0 0.00097 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_6 PF13480.1 gi|55379942|ref|YP_137792.1| - 0.0017 18.3 0.7 0.0041 17.0 0.3 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|55379942|ref|YP_137792.1| - 0.016 15.0 0.0 0.1 12.4 0.0 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain MarR_2 PF12802.2 gi|55379942|ref|YP_137792.1| - 0.029 14.0 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family Pyridox_ox_2 PF12900.2 gi|55379943|ref|YP_137793.1| - 2.4e-19 69.5 0.0 2.8e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55379943|ref|YP_137793.1| - 0.0035 17.3 0.0 0.0048 16.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase QRPTase_C PF01729.14 gi|55379944|ref|YP_137794.1| - 1.6e-56 190.4 1.6 2.3e-56 189.9 1.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|55379944|ref|YP_137794.1| - 3.6e-20 71.5 0.1 6.5e-20 70.7 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|55379944|ref|YP_137794.1| - 0.035 13.2 0.2 0.14 11.2 0.1 2.0 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Peripla_BP_1 PF00532.16 gi|55379944|ref|YP_137794.1| - 0.043 13.0 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Chlorosome_CsmC PF11098.3 gi|55379944|ref|YP_137794.1| - 0.078 12.6 5.3 0.27 10.9 3.7 1.8 1 1 0 1 1 1 0 Chlorosome envelope protein C FAD_binding_2 PF00890.19 gi|55379945|ref|YP_137795.1| - 1.1e-78 264.9 5.2 1.4e-78 264.6 3.6 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|55379945|ref|YP_137795.1| - 6.8e-13 48.2 0.1 8.9e-09 34.7 0.1 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|55379945|ref|YP_137795.1| - 1e-10 41.8 0.7 7.3e-05 22.7 0.3 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55379945|ref|YP_137795.1| - 4.8e-07 29.2 4.2 1.4e-06 27.7 2.7 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|55379945|ref|YP_137795.1| - 5.1e-07 28.8 0.2 5.3e-05 22.2 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Succ_DH_flav_C PF02910.15 gi|55379945|ref|YP_137795.1| - 2.2e-06 27.5 0.4 4.2e-06 26.6 0.3 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.1 gi|55379945|ref|YP_137795.1| - 0.00012 22.0 0.3 0.00032 20.6 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55379945|ref|YP_137795.1| - 0.00014 20.5 0.1 0.0026 16.2 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|55379945|ref|YP_137795.1| - 0.0082 16.5 0.2 0.038 14.3 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|55379945|ref|YP_137795.1| - 0.011 14.8 0.1 0.022 13.8 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|55379945|ref|YP_137795.1| - 0.046 12.8 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 Thi4 family DXP_reductoisom PF02670.11 gi|55379945|ref|YP_137795.1| - 0.06 13.8 0.2 0.15 12.6 0.1 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NadA PF02445.11 gi|55379946|ref|YP_137796.1| - 1.2e-101 339.4 0.1 1.3e-101 339.2 0.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Glyco_hydro_71 PF03659.9 gi|55379946|ref|YP_137796.1| - 0.0095 14.4 0.0 0.015 13.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 71 Amidohydro_3 PF07969.6 gi|55379947|ref|YP_137797.1| - 5.2e-68 230.1 13.9 6e-68 229.9 9.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|55379947|ref|YP_137797.1| - 7.6e-12 44.8 1.6 1.5e-11 43.9 0.1 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|55379947|ref|YP_137797.1| - 2.5e-06 27.4 0.5 0.036 13.7 0.2 2.9 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|55379947|ref|YP_137797.1| - 0.0001 22.4 24.4 0.00098 19.2 16.9 2.5 1 1 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|55379947|ref|YP_137797.1| - 0.012 14.9 0.5 0.02 14.1 0.3 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF3518 PF12031.3 gi|55379947|ref|YP_137797.1| - 0.12 11.1 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3518) HMG-CoA_red PF00368.13 gi|55379948|ref|YP_137798.1| - 6e-138 459.5 5.9 6.8e-138 459.3 4.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase 7TMR-DISM_7TM PF07695.6 gi|55379949|ref|YP_137799.1| - 0.67 9.5 7.7 0.92 9.1 5.4 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling ZF-HD_dimer PF04770.7 gi|55379950|ref|YP_137800.1| - 0.065 13.2 0.7 0.12 12.4 0.5 1.4 1 0 0 1 1 1 0 ZF-HD protein dimerisation region DUF2191 PF09957.4 gi|55379950|ref|YP_137800.1| - 0.068 12.9 0.6 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) zf-UDP PF14569.1 gi|55379950|ref|YP_137800.1| - 0.089 12.5 1.7 0.17 11.6 1.2 1.5 1 0 0 1 1 1 0 Zinc-binding RING-finger COX5B PF01215.14 gi|55379950|ref|YP_137800.1| - 0.25 11.0 1.8 4.1 7.0 0.3 2.8 2 1 1 3 3 3 0 Cytochrome c oxidase subunit Vb zinc_ribbon_4 PF13717.1 gi|55379950|ref|YP_137800.1| - 0.4 10.4 2.8 8.7 6.1 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|55379950|ref|YP_137800.1| - 0.41 10.2 3.4 5.7 6.6 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55379950|ref|YP_137800.1| - 0.92 9.5 3.7 2.5 8.1 2.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF3306 PF11748.3 gi|55379950|ref|YP_137800.1| - 1.5 9.5 7.1 9.1 6.9 4.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3306) FYDLN_acid PF09538.5 gi|55379950|ref|YP_137800.1| - 1.7 9.2 7.4 3.4 8.2 5.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Cupin_2 PF07883.6 gi|55379951|ref|YP_137801.1| - 1.9e-22 78.5 4.2 2.7e-22 78.0 2.9 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|55379951|ref|YP_137801.1| - 9.5e-13 48.0 1.0 1.3e-12 47.5 0.7 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|55379951|ref|YP_137801.1| - 8.4e-07 28.8 0.0 1.1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_1 PF00190.17 gi|55379951|ref|YP_137801.1| - 2e-06 27.3 0.2 2.4e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|55379951|ref|YP_137801.1| - 2.9e-06 26.9 0.0 3.6e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.1 gi|55379951|ref|YP_137801.1| - 0.00018 21.1 0.1 0.0002 20.9 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|55379951|ref|YP_137801.1| - 0.00045 19.5 0.2 0.00063 19.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.7 gi|55379951|ref|YP_137801.1| - 0.0018 18.2 0.0 0.0023 17.8 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_6 PF12852.2 gi|55379951|ref|YP_137801.1| - 0.0027 17.3 0.1 0.0033 17.0 0.1 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|55379951|ref|YP_137801.1| - 0.0031 17.3 0.3 0.004 16.9 0.2 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain ARD PF03079.9 gi|55379951|ref|YP_137801.1| - 0.01 15.7 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 0 ARD/ARD' family Auxin_BP PF02041.11 gi|55379951|ref|YP_137801.1| - 0.054 12.9 0.2 0.089 12.2 0.1 1.5 1 1 0 1 1 1 0 Auxin binding protein Ribosomal_L30 PF00327.15 gi|55379952|ref|YP_137802.1| - 0.085 12.4 0.4 7.3 6.2 0.0 2.7 3 0 0 3 3 3 0 Ribosomal protein L30p/L7e HCV_NS4a PF01006.15 gi|55379953|ref|YP_137803.1| - 0.055 13.0 0.8 0.077 12.5 0.4 1.4 1 1 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a ATP1G1_PLM_MAT8 PF02038.11 gi|55379954|ref|YP_137804.1| - 0.025 13.6 1.2 0.032 13.2 0.1 1.7 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Iso_dh PF00180.15 gi|55379955|ref|YP_137805.1| - 1.7e-109 365.9 0.0 2.3e-109 365.5 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.13 gi|55379956|ref|YP_137806.1| - 2.7e-52 177.5 10.8 3.5e-52 177.1 7.5 1.2 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.19 gi|55379957|ref|YP_137807.1| - 1.8e-44 151.7 0.8 2.3e-44 151.4 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DAN PF03045.10 gi|55379958|ref|YP_137808.1| - 0.04 13.3 0.4 0.046 13.1 0.3 1.1 1 0 0 1 1 1 0 DAN domain RecR PF02132.10 gi|55379958|ref|YP_137808.1| - 0.051 13.0 0.9 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 RecR protein zf-C2H2 PF00096.21 gi|55379958|ref|YP_137808.1| - 0.22 11.9 2.0 2 8.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_2 PF03107.11 gi|55379958|ref|YP_137808.1| - 0.27 11.3 1.6 12 6.1 0.1 2.2 2 0 0 2 2 2 0 C1 domain HIT PF01230.18 gi|55379959|ref|YP_137809.1| - 7.2e-12 45.7 0.0 1.9e-11 44.3 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|55379959|ref|YP_137809.1| - 0.00023 21.3 0.0 0.00039 20.6 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|55379959|ref|YP_137809.1| - 0.00023 20.7 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Rieske PF00355.21 gi|55379960|ref|YP_137810.1| - 2.3e-06 27.0 0.1 4.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|55379960|ref|YP_137810.1| - 5.3 7.3 7.8 0.66 10.1 1.9 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cation_efflux PF01545.16 gi|55379961|ref|YP_137811.1| - 3.3e-55 187.1 0.1 3.7e-55 187.0 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family DoxX PF07681.7 gi|55379962|ref|YP_137812.1| - 8.5e-09 35.7 2.3 1.4e-08 35.0 1.6 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.6 gi|55379962|ref|YP_137812.1| - 0.00017 21.4 0.0 0.0055 16.5 0.0 2.0 1 1 0 1 1 1 1 HR-like lesion-inducing Radical_SAM PF04055.16 gi|55379963|ref|YP_137813.1| - 1.1e-21 77.6 0.0 1.9e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|55379963|ref|YP_137813.1| - 4.2e-19 68.1 0.0 9.3e-19 67.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|55379963|ref|YP_137813.1| - 5.4e-06 26.0 0.1 1.1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 TRAM domain DeoC PF01791.4 gi|55379964|ref|YP_137814.1| - 4.8e-27 94.7 0.1 6.1e-27 94.4 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF63 PF01889.12 gi|55379965|ref|YP_137815.1| - 1.6e-19 71.0 13.5 2.3e-19 70.5 9.4 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Phage_Coat_Gp8 PF05371.7 gi|55379967|ref|YP_137817.1| - 0.0016 17.9 0.3 2 8.0 0.2 2.6 2 0 0 2 2 2 2 Phage major coat protein, Gp8 Na_H_Exchanger PF00999.16 gi|55379967|ref|YP_137817.1| - 0.037 12.5 8.3 0.049 12.1 5.7 1.1 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family EI24 PF07264.6 gi|55379967|ref|YP_137817.1| - 0.27 10.6 7.7 0.1 12.0 2.2 2.0 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF1049 PF06305.6 gi|55379967|ref|YP_137817.1| - 0.38 10.2 0.0 0.38 10.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) DUF2530 PF10745.4 gi|55379967|ref|YP_137817.1| - 0.55 10.2 3.7 6.7 6.7 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) FtsX PF02687.16 gi|55379967|ref|YP_137817.1| - 2.8 7.7 10.6 1.4e+02 2.2 7.4 2.5 1 1 0 1 1 1 0 FtsX-like permease family ATPase_gene1 PF09527.5 gi|55379968|ref|YP_137818.1| - 0.18 11.6 6.5 0.22 11.3 2.4 2.0 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) PNP_UDP_1 PF01048.15 gi|55379969|ref|YP_137819.1| - 2.4e-46 157.5 2.1 2.9e-46 157.3 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPP PF04982.8 gi|55379970|ref|YP_137820.1| - 2e-07 30.8 1.1 3.9e-07 29.9 0.8 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.21 gi|55379970|ref|YP_137820.1| - 2.4e-07 31.0 1.5 0.0019 18.3 0.2 4.0 2 2 1 3 3 3 2 Universal stress protein family TrkA_N PF02254.13 gi|55379971|ref|YP_137821.1| - 7.4e-28 96.8 1.7 1.1e-27 96.2 1.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|55379971|ref|YP_137821.1| - 8.4e-14 51.0 4.3 1.2e-13 50.5 1.3 2.3 2 0 0 2 2 2 1 Ion channel NAD_binding_7 PF13241.1 gi|55379971|ref|YP_137821.1| - 0.00054 20.1 0.2 0.0014 18.8 0.2 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Ion_trans PF00520.26 gi|55379971|ref|YP_137821.1| - 0.001 18.3 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Ion transport protein Pam17 PF08566.5 gi|55379971|ref|YP_137821.1| - 0.16 11.6 0.1 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 VKOR PF07884.9 gi|55379971|ref|YP_137821.1| - 3.7 7.3 7.6 0.95 9.3 0.1 2.7 2 2 0 2 2 2 0 Vitamin K epoxide reductase family TrkA_C PF02080.16 gi|55379972|ref|YP_137822.1| - 3.2e-15 55.4 0.2 5.2e-14 51.6 0.0 2.6 2 0 0 2 2 2 1 TrkA-C domain Neisseria_TspB PF05616.8 gi|55379972|ref|YP_137822.1| - 0.93 7.7 2.8 1.3 7.2 1.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein TrkA_C PF02080.16 gi|55379973|ref|YP_137823.1| - 2.2e-06 27.1 0.1 2.2e-06 27.1 0.1 2.3 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.15 gi|55379974|ref|YP_137824.1| - 6.5e-11 42.5 0.2 7.7e-11 42.2 0.1 1.1 1 0 0 1 1 1 1 ThiS family PTS-HPr PF00381.14 gi|55379974|ref|YP_137824.1| - 0.18 11.7 1.6 5.4 6.9 0.1 2.1 2 0 0 2 2 2 0 PTS HPr component phosphorylation site HisKA PF00512.20 gi|55379975|ref|YP_137825.1| - 8.4e-05 22.4 0.9 0.00025 20.9 0.3 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|55379975|ref|YP_137825.1| - 0.012 15.3 0.0 0.034 13.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|55379975|ref|YP_137825.1| - 0.022 14.6 0.0 0.066 13.1 0.0 1.8 1 0 0 1 1 1 0 PAS domain PAS_10 PF13596.1 gi|55379975|ref|YP_137825.1| - 0.023 14.9 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.1 gi|55379975|ref|YP_137825.1| - 0.074 12.6 0.1 0.17 11.4 0.1 1.7 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS PF00989.19 gi|55379975|ref|YP_137825.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold Acetyltransf_1 PF00583.19 gi|55379976|ref|YP_137826.1| - 8e-11 41.8 0.1 3.8e-10 39.6 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.1 gi|55379976|ref|YP_137826.1| - 2.6e-06 27.4 1.0 1.3e-05 25.2 0.2 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|55379976|ref|YP_137826.1| - 0.00011 22.2 0.0 0.00019 21.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|55379976|ref|YP_137826.1| - 0.0049 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|55379976|ref|YP_137826.1| - 0.01 15.6 0.1 0.05 13.4 0.0 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|55379976|ref|YP_137826.1| - 0.067 13.0 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|55379976|ref|YP_137826.1| - 0.12 12.5 0.4 0.22 11.6 0.2 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.15 gi|55379977|ref|YP_137827.1| - 6.9e-90 301.0 0.3 8.6e-90 300.7 0.2 1.0 1 0 0 1 1 1 1 Asparaginase DUF2285 PF10074.4 gi|55379978|ref|YP_137828.1| - 0.047 14.0 0.3 0.047 14.0 0.2 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Bax1-I PF01027.15 gi|55379979|ref|YP_137829.1| - 0.32 10.5 5.4 0.41 10.2 3.7 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Na_H_antiporter PF03553.9 gi|55379980|ref|YP_137830.1| - 2.4e-70 236.9 30.8 3.5e-66 223.3 10.1 2.8 1 1 1 2 2 2 2 Na+/H+ antiporter family HTH_5 PF01022.15 gi|55379981|ref|YP_137831.1| - 1.8e-15 56.2 0.3 2.7e-14 52.5 0.0 2.7 3 1 1 4 4 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55379981|ref|YP_137831.1| - 5.1e-12 45.4 0.2 6.6e-11 41.8 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain TrmB PF01978.14 gi|55379981|ref|YP_137831.1| - 1.3e-10 40.8 0.0 3.9e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55379981|ref|YP_137831.1| - 1.4e-09 37.5 0.2 4.6e-07 29.4 0.0 2.8 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.1 gi|55379981|ref|YP_137831.1| - 1.1e-08 34.3 0.0 6.2e-08 31.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|55379981|ref|YP_137831.1| - 1e-07 31.5 0.0 5e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|55379981|ref|YP_137831.1| - 1.4e-05 25.1 0.0 0.0036 17.3 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|55379981|ref|YP_137831.1| - 1.7e-05 24.3 0.0 3.5e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|55379981|ref|YP_137831.1| - 1.8e-05 24.4 0.0 0.0017 18.0 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|55379981|ref|YP_137831.1| - 2.9e-05 24.2 0.0 0.003 17.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|55379981|ref|YP_137831.1| - 5.7e-05 22.9 0.0 0.0015 18.4 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|55379981|ref|YP_137831.1| - 0.0001 21.6 0.1 0.079 12.4 0.0 2.8 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|55379981|ref|YP_137831.1| - 0.00019 21.1 0.7 0.0056 16.4 0.0 3.4 3 2 1 4 4 4 1 Transcriptional regulator PadR-like family HTH_CodY PF08222.6 gi|55379981|ref|YP_137831.1| - 0.0013 17.9 0.0 0.0028 16.9 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|55379981|ref|YP_137831.1| - 0.0015 18.4 0.0 0.12 12.4 0.0 2.4 3 0 0 3 3 2 1 Sulfolobus plasmid regulatory protein LexA_DNA_bind PF01726.11 gi|55379981|ref|YP_137831.1| - 0.0019 17.7 0.0 0.042 13.4 0.0 2.6 2 0 0 2 2 2 1 LexA DNA binding domain DUF2250 PF10007.4 gi|55379981|ref|YP_137831.1| - 0.0058 16.5 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|55379981|ref|YP_137831.1| - 0.0059 16.1 0.0 1.7 8.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) DUF2513 PF10711.4 gi|55379981|ref|YP_137831.1| - 0.01 15.8 0.1 0.028 14.5 0.0 1.7 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) HTH_23 PF13384.1 gi|55379981|ref|YP_137831.1| - 0.021 14.4 0.3 0.049 13.3 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|55379981|ref|YP_137831.1| - 0.021 14.3 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 1 0 HTH DNA binding domain HTH_36 PF13730.1 gi|55379981|ref|YP_137831.1| - 0.04 14.0 0.0 0.082 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|55379981|ref|YP_137831.1| - 0.067 12.7 0.1 1.2 8.6 0.0 3.1 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|55379981|ref|YP_137831.1| - 0.074 12.5 0.0 0.53 9.8 0.0 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit HxlR PF01638.12 gi|55379981|ref|YP_137831.1| - 0.076 12.6 0.0 0.65 9.6 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix ArsR PF09824.4 gi|55379981|ref|YP_137831.1| - 0.081 12.2 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_34 PF13601.1 gi|55379981|ref|YP_137831.1| - 0.099 12.6 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain DDRGK PF09756.4 gi|55379981|ref|YP_137831.1| - 0.099 12.0 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain B-block_TFIIIC PF04182.7 gi|55379981|ref|YP_137831.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Cdc6_C PF09079.6 gi|55379981|ref|YP_137831.1| - 0.13 11.9 0.3 0.76 9.5 0.0 2.3 3 0 0 3 3 2 0 CDC6, C terminal GvpG PF05120.7 gi|55379982|ref|YP_137832.1| - 0.028 14.2 0.6 0.05 13.4 0.4 1.4 1 0 0 1 1 1 0 Gas vesicle protein G DMAP_binding PF06464.6 gi|55379982|ref|YP_137832.1| - 0.029 14.9 1.0 0.068 13.7 0.7 1.6 1 0 0 1 1 1 0 DMAP1-binding Domain Fmp27_WPPW PF10359.4 gi|55379982|ref|YP_137832.1| - 0.062 11.7 0.2 0.09 11.1 0.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Mnd1 PF03962.10 gi|55379982|ref|YP_137832.1| - 0.46 10.1 3.2 0.71 9.5 2.2 1.2 1 0 0 1 1 1 0 Mnd1 family DUF1405 PF07187.6 gi|55379983|ref|YP_137833.1| - 2.7e-43 147.5 13.0 2.7e-43 147.5 9.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1405) HTH_10 PF04967.7 gi|55379985|ref|YP_137835.1| - 2.1e-15 55.9 0.0 3.3e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|55379985|ref|YP_137835.1| - 0.011 15.0 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|55379985|ref|YP_137835.1| - 0.023 14.3 0.1 0.047 13.3 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.1 gi|55379985|ref|YP_137835.1| - 0.094 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ATG16 PF08614.6 gi|55379986|ref|YP_137836.1| - 0.00072 19.4 8.2 0.0012 18.6 5.7 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Fmp27_WPPW PF10359.4 gi|55379986|ref|YP_137836.1| - 0.0011 17.4 5.3 0.0016 16.9 3.7 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain FadA PF09403.5 gi|55379986|ref|YP_137836.1| - 0.0041 17.1 5.7 0.0075 16.2 4.0 1.3 1 0 0 1 1 1 1 Adhesion protein FadA bZIP_2 PF07716.10 gi|55379986|ref|YP_137836.1| - 0.03 14.1 13.1 0.66 9.8 1.1 2.5 1 1 1 2 2 2 0 Basic region leucine zipper Mnd1 PF03962.10 gi|55379986|ref|YP_137836.1| - 0.045 13.4 7.8 0.08 12.5 5.4 1.4 1 0 0 1 1 1 0 Mnd1 family DUF972 PF06156.8 gi|55379986|ref|YP_137836.1| - 0.079 13.3 4.9 0.15 12.4 3.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) bZIP_1 PF00170.16 gi|55379986|ref|YP_137836.1| - 0.086 12.8 12.5 0.49 10.3 2.2 2.5 1 1 1 2 2 2 0 bZIP transcription factor DinB_2 PF12867.2 gi|55379986|ref|YP_137836.1| - 0.1 12.9 1.7 0.6 10.4 0.9 2.3 2 0 0 2 2 2 0 DinB superfamily CALCOCO1 PF07888.6 gi|55379986|ref|YP_137836.1| - 0.1 10.8 6.9 0.14 10.4 4.8 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like IncA PF04156.9 gi|55379986|ref|YP_137836.1| - 0.21 11.1 14.6 0.032 13.8 7.5 1.5 2 0 0 2 2 2 0 IncA protein VSG_B PF13206.1 gi|55379986|ref|YP_137836.1| - 0.22 10.6 1.0 0.31 10.1 0.7 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain Med8 PF10232.4 gi|55379986|ref|YP_137836.1| - 0.23 10.9 3.0 0.37 10.2 2.1 1.3 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 TSC22 PF01166.13 gi|55379986|ref|YP_137836.1| - 0.28 11.1 8.8 3.1 7.8 1.4 2.6 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF4407 PF14362.1 gi|55379986|ref|YP_137836.1| - 0.32 9.9 4.1 2.5 6.9 3.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Laminin_II PF06009.7 gi|55379986|ref|YP_137836.1| - 0.34 10.6 3.8 0.69 9.6 2.5 1.5 1 1 0 1 1 1 0 Laminin Domain II APG6 PF04111.7 gi|55379986|ref|YP_137836.1| - 0.38 9.7 9.1 0.6 9.1 6.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF342 PF03961.8 gi|55379986|ref|YP_137836.1| - 0.55 8.5 2.0 0.75 8.1 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spc24 PF08286.6 gi|55379986|ref|YP_137836.1| - 0.61 9.7 6.2 0.6 9.8 2.9 1.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Atg14 PF10186.4 gi|55379986|ref|YP_137836.1| - 0.63 8.9 5.4 0.96 8.3 3.8 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Snapin_Pallidin PF14712.1 gi|55379986|ref|YP_137836.1| - 0.99 9.7 6.0 7.5 6.9 2.8 2.7 2 1 0 2 2 1 0 Snapin/Pallidin FUSC PF04632.7 gi|55379986|ref|YP_137836.1| - 1.5 7.1 10.9 0.38 9.1 5.1 1.6 2 0 0 2 2 2 0 Fusaric acid resistance protein family DivIC PF04977.10 gi|55379986|ref|YP_137836.1| - 1.6 8.2 12.1 0.55 9.7 2.7 2.9 2 1 1 3 3 3 0 Septum formation initiator DUF904 PF06005.7 gi|55379986|ref|YP_137836.1| - 1.7 9.0 13.1 7.9e+02 0.4 9.1 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF904) WD40_alt PF14077.1 gi|55379986|ref|YP_137836.1| - 1.7 8.3 4.8 3.7 7.2 0.1 2.6 2 0 0 2 2 2 0 Alternative WD40 repeat motif ADIP PF11559.3 gi|55379986|ref|YP_137836.1| - 4 7.3 11.5 0.7 9.7 5.4 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding Mto2_bdg PF12808.2 gi|55379986|ref|YP_137836.1| - 7.5 6.7 14.9 0.13 12.3 3.1 2.7 1 1 1 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DUF1611 PF07755.6 gi|55379987|ref|YP_137837.1| - 1.3e-110 368.7 0.4 1.5e-110 368.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CbiA PF01656.18 gi|55379987|ref|YP_137837.1| - 0.091 12.1 0.2 0.29 10.5 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MR_MLE PF01188.16 gi|55379988|ref|YP_137838.1| - 2e-17 63.4 6.6 4.6e-17 62.2 4.6 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|55379988|ref|YP_137838.1| - 3.3e-17 62.4 1.4 1.7e-16 60.1 0.2 2.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55379988|ref|YP_137838.1| - 2.5e-08 33.8 1.0 1.2e-07 31.7 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|55379988|ref|YP_137838.1| - 0.0024 16.8 0.2 0.004 16.1 0.1 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus AhpC-TSA PF00578.16 gi|55379989|ref|YP_137839.1| - 4.7e-32 110.2 0.0 5.5e-32 110.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|55379989|ref|YP_137839.1| - 8.6e-25 86.9 0.0 9.8e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|55379989|ref|YP_137839.1| - 0.005 16.3 0.0 0.0063 15.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|55379989|ref|YP_137839.1| - 0.0053 16.6 0.0 1 9.2 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA antioxidant enzyme Hexapep PF00132.19 gi|55379991|ref|YP_137841.1| - 1.1e-14 53.2 13.0 5.5e-05 22.4 0.1 3.8 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|55379991|ref|YP_137841.1| - 7.5e-05 22.2 8.8 0.013 14.9 0.3 3.8 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|55379991|ref|YP_137841.1| - 0.092 11.2 0.0 0.1 11.1 0.0 1.1 1 0 0 1 1 1 0 L-fucokinase Usp PF00582.21 gi|55379992|ref|YP_137842.1| - 1.3e-33 116.1 3.2 1.5e-33 115.9 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|55379992|ref|YP_137842.1| - 0.33 11.1 1.6 16 5.7 0.1 2.2 1 1 1 2 2 2 0 GTP-binding GTPase N-terminal tRNA-synt_2b PF00587.20 gi|55379994|ref|YP_137844.1| - 2.2e-37 128.3 0.0 4e-37 127.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|55379994|ref|YP_137844.1| - 1.6e-16 60.0 0.4 3.8e-16 58.7 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.16 gi|55379994|ref|YP_137844.1| - 1.7e-13 50.2 1.5 2e-13 49.9 0.1 1.8 2 0 0 2 2 2 1 TGS domain tRNA_SAD PF07973.9 gi|55379994|ref|YP_137844.1| - 1.1e-12 47.5 0.0 2.3e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DAGK_cat PF00781.19 gi|55379996|ref|YP_137846.1| - 6.9e-19 67.5 0.9 1.3e-18 66.6 0.6 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|55379996|ref|YP_137846.1| - 0.035 12.8 0.2 0.056 12.2 0.1 1.2 1 0 0 1 1 1 0 ATP-NAD kinase CitMHS PF03600.11 gi|55379997|ref|YP_137847.1| - 5.3e-45 153.5 0.0 5.3e-40 137.0 0.0 1.8 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|55379997|ref|YP_137847.1| - 8.8e-20 70.0 4.7 1.5e-10 40.4 0.3 3.4 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.14 gi|55379997|ref|YP_137847.1| - 1.1e-15 57.4 34.5 1.3e-10 40.7 9.8 3.2 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region PspA_IM30 PF04012.7 gi|55379998|ref|YP_137848.1| - 6.8e-34 117.1 39.4 6.8e-34 117.1 27.3 1.9 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|55379998|ref|YP_137848.1| - 0.00052 19.4 19.5 0.00052 19.4 13.5 4.4 1 1 2 3 3 3 1 Snf7 gpW PF02831.10 gi|55379998|ref|YP_137848.1| - 0.081 12.4 1.7 3.3 7.3 0.1 3.0 2 0 0 2 2 2 0 gpW AAA_13 PF13166.1 gi|55379998|ref|YP_137848.1| - 0.7 8.2 32.5 0.12 10.8 19.6 1.6 1 1 0 1 1 1 0 AAA domain DUF479 PF04336.7 gi|55379998|ref|YP_137848.1| - 0.87 9.7 13.1 9.5 6.3 2.9 3.5 1 1 2 3 3 3 0 Protein of unknown function, DUF479 YlqD PF11068.3 gi|55379998|ref|YP_137848.1| - 0.96 9.4 43.7 1.7 8.6 11.1 3.4 1 1 2 3 3 3 0 YlqD protein Snapin_Pallidin PF14712.1 gi|55379998|ref|YP_137848.1| - 1.5 9.1 28.6 0.054 13.7 7.4 3.7 1 1 2 3 3 3 0 Snapin/Pallidin DUF948 PF06103.6 gi|55379998|ref|YP_137848.1| - 1.7 8.5 15.5 12 5.8 3.7 3.6 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF972 PF06156.8 gi|55379998|ref|YP_137848.1| - 1.9 8.8 37.2 0.4 11.0 5.7 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF972) MAD PF05557.8 gi|55379998|ref|YP_137848.1| - 2 6.3 43.9 4 5.3 30.4 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein ERM PF00769.14 gi|55379998|ref|YP_137848.1| - 4.5 6.7 55.5 0.083 12.4 32.8 1.8 1 1 1 2 2 2 0 Ezrin/radixin/moesin family TPR_MLP1_2 PF07926.7 gi|55379998|ref|YP_137848.1| - 7.6 6.2 48.5 3.2 7.5 19.7 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Abhydrolase_5 PF12695.2 gi|55379999|ref|YP_137849.1| - 2.6e-11 43.4 2.5 4.6e-11 42.6 1.7 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55379999|ref|YP_137849.1| - 5.2e-06 26.5 11.9 0.0043 16.9 3.9 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|55379999|ref|YP_137849.1| - 0.00018 20.8 0.1 0.00025 20.4 0.1 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|55379999|ref|YP_137849.1| - 0.0096 16.1 1.4 0.05 13.8 1.0 1.9 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_1 PF00561.15 gi|55379999|ref|YP_137849.1| - 0.03 13.8 0.8 2.7 7.4 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|55379999|ref|YP_137849.1| - 0.09 12.1 0.2 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.6 gi|55379999|ref|YP_137849.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal GtrA PF04138.9 gi|55380000|ref|YP_137850.1| - 1.7 8.6 5.2 1.9 8.4 3.6 1.0 1 0 0 1 1 1 0 GtrA-like protein Tim17 PF02466.14 gi|55380001|ref|YP_137851.1| - 0.018 15.1 0.4 0.018 15.0 0.3 1.1 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family CTP_synth_N PF06418.9 gi|55380002|ref|YP_137852.1| - 4.2e-126 419.6 0.1 6.2e-126 419.1 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|55380002|ref|YP_137852.1| - 6.5e-50 169.2 0.0 1.4e-49 168.1 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|55380002|ref|YP_137852.1| - 1.8e-07 30.8 0.0 3.7e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|55380002|ref|YP_137852.1| - 2.7e-07 30.2 0.0 4.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|55380002|ref|YP_137852.1| - 0.054 13.0 0.0 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Glyco_hydro_3_C PF01915.17 gi|55380002|ref|YP_137852.1| - 0.12 11.8 0.0 1 8.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain GMP_synt_C PF00958.17 gi|55380003|ref|YP_137853.1| - 5.5e-29 99.7 0.1 1.8e-28 98.0 0.0 1.9 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|55380003|ref|YP_137853.1| - 1e-10 40.9 0.0 1.9e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|55380003|ref|YP_137853.1| - 0.00013 20.6 0.0 0.002 16.7 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|55380003|ref|YP_137853.1| - 0.00096 18.7 0.0 0.0027 17.2 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|55380003|ref|YP_137853.1| - 0.0035 16.6 0.0 0.011 15.0 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|55380003|ref|YP_137853.1| - 0.076 12.5 0.0 0.13 11.7 0.0 1.5 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.14 gi|55380003|ref|YP_137853.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TrkA_N PF02254.13 gi|55380004|ref|YP_137854.1| - 2.1e-06 27.7 0.0 2.4e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 TrkA-N domain Lactamase_B PF00753.22 gi|55380005|ref|YP_137855.1| - 1.8e-21 76.7 7.3 2.3e-21 76.3 5.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|55380005|ref|YP_137855.1| - 0.013 15.0 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Aldo_ket_red PF00248.16 gi|55380007|ref|YP_137857.1| - 1e-63 214.8 0.0 1.2e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PLAT PF01477.18 gi|55380008|ref|YP_137858.1| - 0.024 15.0 0.3 0.15 12.4 0.2 2.0 1 1 0 1 1 1 0 PLAT/LH2 domain PSII_BNR PF14870.1 gi|55380009|ref|YP_137859.1| - 8e-05 21.7 11.5 0.095 11.6 1.7 4.0 1 1 3 5 5 5 5 Photosynthesis system II assembly factor YCF48 MoCF_biosynth PF00994.19 gi|55380010|ref|YP_137860.1| - 3.2e-17 62.2 0.8 5.5e-17 61.5 0.5 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF605 PF04652.11 gi|55380010|ref|YP_137860.1| - 0.23 10.7 26.3 0.3 10.4 18.2 1.0 1 0 0 1 1 1 0 Vta1 like Utp14 PF04615.8 gi|55380010|ref|YP_137860.1| - 8.4 4.4 20.0 10 4.1 13.8 1.0 1 0 0 1 1 1 0 Utp14 protein HATPase_c PF02518.21 gi|55380012|ref|YP_137862.1| - 6.5e-14 51.5 0.0 1.8e-13 50.1 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55380012|ref|YP_137862.1| - 5.4e-12 45.7 0.6 4.3e-11 42.8 0.4 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|55380012|ref|YP_137862.1| - 8.9e-08 31.9 0.1 1.5e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|55380012|ref|YP_137862.1| - 2.7e-07 30.8 0.0 2.4e-06 27.8 0.0 2.5 2 1 0 2 2 2 1 PAS domain PAS PF00989.19 gi|55380012|ref|YP_137862.1| - 5.6e-07 29.3 0.0 1.9e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|55380012|ref|YP_137862.1| - 2.5e-05 24.1 0.6 0.00012 22.0 0.3 2.2 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|55380012|ref|YP_137862.1| - 0.00014 21.6 0.0 0.00038 20.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|55380012|ref|YP_137862.1| - 0.0038 16.8 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|55380012|ref|YP_137862.1| - 0.012 15.1 0.5 0.029 13.9 0.3 1.7 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain XLF PF09302.6 gi|55380012|ref|YP_137862.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 XLF (XRCC4-like factor) adh_short PF00106.20 gi|55380013|ref|YP_137863.1| - 2.6e-26 92.5 0.9 3.9e-26 91.9 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55380013|ref|YP_137863.1| - 6.1e-08 32.5 1.2 3.7e-07 29.9 0.8 1.9 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|55380013|ref|YP_137863.1| - 2.1e-05 24.6 2.5 3.1e-05 24.0 1.8 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55380013|ref|YP_137863.1| - 0.00035 20.1 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NUDIX PF00293.23 gi|55380014|ref|YP_137864.1| - 2.9e-13 49.6 1.3 3.7e-13 49.2 0.9 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|55380014|ref|YP_137864.1| - 0.00085 18.7 0.5 0.0026 17.1 0.4 1.8 1 1 0 1 1 1 1 NUDIX domain GlnE PF03710.10 gi|55380014|ref|YP_137864.1| - 0.076 12.2 0.6 0.49 9.5 0.1 2.2 2 1 1 3 3 3 0 Glutamate-ammonia ligase adenylyltransferase HTH_10 PF04967.7 gi|55380016|ref|YP_137865.1| - 1e-19 69.8 0.0 3.4e-19 68.1 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|55380016|ref|YP_137865.1| - 0.00013 21.4 0.8 0.013 15.0 0.0 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55380016|ref|YP_137865.1| - 0.00014 21.1 0.0 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55380016|ref|YP_137865.1| - 0.0056 16.3 0.0 0.018 14.6 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|55380016|ref|YP_137865.1| - 0.0088 15.5 0.2 0.028 13.9 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|55380016|ref|YP_137865.1| - 0.02 14.6 0.1 0.17 11.7 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain PuR_N PF09182.5 gi|55380016|ref|YP_137865.1| - 0.061 12.9 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Fe_dep_repress PF01325.14 gi|55380016|ref|YP_137865.1| - 0.12 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Polyketide_cyc2 PF10604.4 gi|55380015|ref|YP_137866.1| - 6.7e-09 36.0 0.1 1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|55380015|ref|YP_137866.1| - 0.07 13.1 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AdoMet_Synthase PF01941.14 gi|55380017|ref|YP_137867.1| - 0.0035 15.8 0.0 0.0041 15.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Radical_SAM PF04055.16 gi|55380018|ref|YP_137868.1| - 9.2e-20 71.4 0.0 1.7e-19 70.6 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|55380018|ref|YP_137868.1| - 4.2e-05 23.5 0.0 8.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|55380018|ref|YP_137868.1| - 0.0002 21.4 0.0 0.00033 20.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|55380018|ref|YP_137868.1| - 0.035 13.8 0.3 0.74 9.4 0.0 2.7 3 0 0 3 3 3 0 Tetrapyrrole (Corrin/Porphyrin) Methylases HTH_10 PF04967.7 gi|55380019|ref|YP_137869.1| - 5e-19 67.6 0.0 7.5e-19 67.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|55380019|ref|YP_137869.1| - 0.029 13.6 0.1 0.19 11.0 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|55380019|ref|YP_137869.1| - 0.13 11.8 0.3 1.1 8.8 0.2 2.2 1 1 1 2 2 2 0 LexA DNA binding domain DUF360 PF04020.8 gi|55380021|ref|YP_137871.1| - 0.32 11.3 5.4 0.54 10.6 3.8 1.3 1 0 0 1 1 1 0 Membrane protein of unknown function VirB3 PF05101.8 gi|55380021|ref|YP_137871.1| - 0.42 10.6 6.5 0.11 12.4 0.3 2.0 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein HTH_20 PF12840.2 gi|55380022|ref|YP_137872.1| - 2.1e-10 40.2 0.0 2.8e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55380022|ref|YP_137872.1| - 3.2e-10 39.5 0.0 4.7e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55380022|ref|YP_137872.1| - 3e-05 23.6 0.0 3.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|55380022|ref|YP_137872.1| - 0.0007 19.1 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.5 gi|55380022|ref|YP_137872.1| - 0.0033 17.1 0.1 0.0053 16.4 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|55380022|ref|YP_137872.1| - 0.0055 16.0 0.0 0.0076 15.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|55380022|ref|YP_137872.1| - 0.0075 16.3 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|55380022|ref|YP_137872.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|55380022|ref|YP_137872.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|55380022|ref|YP_137872.1| - 0.022 14.3 0.1 0.071 12.6 0.0 1.8 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|55380022|ref|YP_137872.1| - 0.03 14.1 0.0 0.044 13.6 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2089 PF09862.4 gi|55380022|ref|YP_137872.1| - 0.04 13.7 0.0 0.047 13.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) MarR_2 PF12802.2 gi|55380022|ref|YP_137872.1| - 0.045 13.4 0.0 0.08 12.6 0.0 1.5 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|55380022|ref|YP_137872.1| - 0.052 13.8 0.0 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|55380022|ref|YP_137872.1| - 0.059 12.9 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TFIIE_alpha PF02002.12 gi|55380022|ref|YP_137872.1| - 0.065 12.7 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_30 PF13556.1 gi|55380022|ref|YP_137872.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.7 gi|55380022|ref|YP_137872.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Penicillinase_R PF03965.11 gi|55380022|ref|YP_137872.1| - 0.073 13.1 0.0 0.099 12.7 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor Aminotran_1_2 PF00155.16 gi|55380023|ref|YP_137873.1| - 8e-64 215.8 0.0 9e-64 215.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|55380023|ref|YP_137873.1| - 1.9e-13 50.2 0.2 3.3e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|55380023|ref|YP_137873.1| - 3.8e-12 45.9 0.1 7.5e-12 44.9 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|55380023|ref|YP_137873.1| - 4e-06 25.3 0.0 6.8e-06 24.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|55380023|ref|YP_137873.1| - 9.5e-06 24.5 0.0 1.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|55380023|ref|YP_137873.1| - 0.035 12.9 0.0 0.05 12.4 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Thiolase_N PF00108.18 gi|55380024|ref|YP_137874.1| - 1.4e-84 283.2 0.3 2.1e-84 282.6 0.2 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|55380024|ref|YP_137874.1| - 7.2e-34 115.8 1.9 2.4e-33 114.1 0.1 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|55380024|ref|YP_137874.1| - 0.0039 17.1 0.2 0.018 15.0 0.1 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ketoacyl-synt PF00109.21 gi|55380024|ref|YP_137874.1| - 0.013 14.9 0.7 0.013 14.9 0.5 1.8 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain TPR_MLP1_2 PF07926.7 gi|55380024|ref|YP_137874.1| - 0.16 11.7 0.4 0.24 11.1 0.3 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ACP_syn_III PF08545.5 gi|55380024|ref|YP_137874.1| - 1.3 8.7 5.5 8.6 6.1 0.2 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DivIVA PF05103.8 gi|55380025|ref|YP_137875.1| - 0.03 14.3 0.2 0.032 14.2 0.1 1.0 1 0 0 1 1 1 0 DivIVA protein MarR_2 PF12802.2 gi|55380026|ref|YP_137876.1| - 2.1e-10 40.1 0.2 6.7e-10 38.4 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|55380026|ref|YP_137876.1| - 1e-09 37.6 0.0 5.8e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55380026|ref|YP_137876.1| - 4.3e-08 33.3 0.1 1.5e-07 31.5 0.0 2.0 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|55380026|ref|YP_137876.1| - 6.8e-08 32.0 0.0 2.1e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|55380026|ref|YP_137876.1| - 2.5e-06 27.1 0.0 7.7e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|55380026|ref|YP_137876.1| - 1.4e-05 24.7 0.0 3.4e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|55380026|ref|YP_137876.1| - 0.00022 20.9 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_13 PF11972.3 gi|55380026|ref|YP_137876.1| - 0.00032 20.5 1.2 0.0004 20.1 0.1 1.8 2 0 0 2 2 1 1 HTH DNA binding domain HTH_11 PF08279.7 gi|55380026|ref|YP_137876.1| - 0.00089 18.8 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|55380026|ref|YP_137876.1| - 0.0011 18.5 0.1 0.0021 17.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|55380026|ref|YP_137876.1| - 0.0012 18.2 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_IclR PF09339.5 gi|55380026|ref|YP_137876.1| - 0.0014 18.1 0.0 0.0031 17.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|55380026|ref|YP_137876.1| - 0.0019 18.0 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|55380026|ref|YP_137876.1| - 0.003 17.1 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|55380026|ref|YP_137876.1| - 0.0032 17.0 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Mnd1 PF03962.10 gi|55380026|ref|YP_137876.1| - 0.0037 16.9 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Mnd1 family GntR PF00392.16 gi|55380026|ref|YP_137876.1| - 0.0048 16.2 0.1 0.013 14.8 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family NMD3 PF04981.8 gi|55380026|ref|YP_137876.1| - 0.005 15.9 0.0 0.0071 15.4 0.0 1.2 1 0 0 1 1 1 1 NMD3 family Rrf2 PF02082.15 gi|55380026|ref|YP_137876.1| - 0.0063 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|55380026|ref|YP_137876.1| - 0.011 15.2 3.4 0.17 11.4 0.1 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MotA_activ PF09114.5 gi|55380026|ref|YP_137876.1| - 0.014 15.0 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HemN_C PF06969.11 gi|55380026|ref|YP_137876.1| - 0.014 15.3 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_36 PF13730.1 gi|55380026|ref|YP_137876.1| - 0.018 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|55380026|ref|YP_137876.1| - 0.035 13.7 0.0 0.085 12.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.7 gi|55380026|ref|YP_137876.1| - 0.078 13.1 0.2 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein HTH_3 PF01381.17 gi|55380026|ref|YP_137876.1| - 0.085 12.7 0.1 0.38 10.6 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix LexA_DNA_bind PF01726.11 gi|55380026|ref|YP_137876.1| - 0.1 12.1 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Rio2_N PF09202.6 gi|55380026|ref|YP_137876.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal DUF2250 PF10007.4 gi|55380026|ref|YP_137876.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.1 gi|55380026|ref|YP_137876.1| - 0.18 11.3 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) MDMPI_N PF11716.3 gi|55380026|ref|YP_137876.1| - 2 8.8 12.8 1.5 9.2 2.8 2.5 2 1 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain LacI PF00356.16 gi|55380026|ref|YP_137876.1| - 3.2 7.4 5.9 2.2 7.9 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family Metallophos PF00149.23 gi|55380027|ref|YP_137877.1| - 0.01 15.2 0.2 0.065 12.6 0.0 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase DUF3463 PF11946.3 gi|55380027|ref|YP_137877.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Amino_oxidase PF01593.19 gi|55380029|ref|YP_137879.1| - 3.2e-39 135.2 0.4 4.9e-39 134.6 0.3 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|55380029|ref|YP_137879.1| - 1.1e-16 60.6 7.0 4.3e-16 58.7 4.8 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55380029|ref|YP_137879.1| - 1.3e-16 60.3 0.4 3e-16 59.2 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|55380029|ref|YP_137879.1| - 1.7e-09 37.0 1.5 3.4e-07 29.4 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|55380029|ref|YP_137879.1| - 2e-09 36.4 0.4 3.5e-05 22.4 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|55380029|ref|YP_137879.1| - 1.4e-07 31.6 0.1 0.00015 21.6 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|55380029|ref|YP_137879.1| - 5.2e-07 29.0 0.9 8.6e-05 21.7 0.2 2.4 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|55380029|ref|YP_137879.1| - 7.1e-06 26.2 0.0 0.00011 22.3 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55380029|ref|YP_137879.1| - 1.6e-05 24.1 0.1 2.8e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|55380029|ref|YP_137879.1| - 4.2e-05 23.8 0.7 0.0026 18.1 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55380029|ref|YP_137879.1| - 0.00029 20.0 2.5 0.00029 20.0 1.7 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|55380029|ref|YP_137879.1| - 0.002 17.0 0.5 0.0031 16.4 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|55380029|ref|YP_137879.1| - 0.011 15.3 0.1 0.018 14.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|55380029|ref|YP_137879.1| - 0.035 14.3 0.1 0.095 12.9 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|55380029|ref|YP_137879.1| - 0.05 12.5 1.3 0.066 12.1 0.1 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|55380029|ref|YP_137879.1| - 0.085 11.4 0.2 0.12 10.9 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|55380029|ref|YP_137879.1| - 0.11 12.2 2.7 0.28 10.9 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding FMO-like PF00743.14 gi|55380029|ref|YP_137879.1| - 0.13 10.3 0.0 0.18 9.9 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like PALP PF00291.20 gi|55380030|ref|YP_137880.1| - 3.2e-50 171.0 2.2 3.9e-50 170.8 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|55380030|ref|YP_137880.1| - 0.0013 17.8 1.1 0.0029 16.7 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|55380030|ref|YP_137880.1| - 0.0076 16.0 0.2 0.014 15.2 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|55380030|ref|YP_137880.1| - 0.037 13.5 0.9 0.072 12.6 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.6 gi|55380030|ref|YP_137880.1| - 0.078 12.8 1.0 0.15 11.9 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.1 gi|55380030|ref|YP_137880.1| - 0.13 11.4 2.4 0.36 10.0 1.7 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Preseq_ALAS PF09029.5 gi|55380030|ref|YP_137880.1| - 0.18 11.7 0.5 3.6 7.6 0.0 2.4 2 0 0 2 2 2 0 5-aminolevulinate synthase presequence TF_Zn_Ribbon PF08271.7 gi|55380030|ref|YP_137880.1| - 4.4 6.7 5.2 36 3.7 3.6 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding ADH_zinc_N PF00107.21 gi|55380031|ref|YP_137881.1| - 9.3e-25 86.6 2.6 1.4e-24 86.1 0.4 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55380031|ref|YP_137881.1| - 1.2e-22 79.6 0.4 2.5e-22 78.6 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|55380031|ref|YP_137881.1| - 2.1e-15 57.7 0.2 2.1e-15 57.7 0.1 2.2 2 1 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|55380031|ref|YP_137881.1| - 0.039 13.1 4.3 0.12 11.5 3.0 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Usp PF00582.21 gi|55380032|ref|YP_137882.1| - 2.7e-22 79.4 0.7 3.2e-22 79.2 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|55380033|ref|YP_137883.1| - 3.9e-58 195.6 4.5 1.4e-29 103.0 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family NIR_SIR PF01077.17 gi|55380033|ref|YP_137883.1| - 0.13 11.5 0.0 0.6 9.4 0.0 1.9 2 0 0 2 2 2 0 Nitrite and sulphite reductase 4Fe-4S domain DnaJ PF00226.26 gi|55380034|ref|YP_137884.1| - 6.5e-11 41.8 0.0 9.8e-11 41.2 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain PAC2 PF09754.4 gi|55380035|ref|YP_137885.1| - 9.2e-53 179.3 0.1 1.1e-52 179.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|55380036|ref|YP_137886.1| - 7.3e-25 86.4 0.2 8e-25 86.3 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.11 gi|55380036|ref|YP_137886.1| - 0.018 14.7 0.9 0.028 14.1 0.7 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|55380036|ref|YP_137886.1| - 0.024 13.8 0.7 0.042 13.0 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|55380036|ref|YP_137886.1| - 0.11 12.1 0.2 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger EIF_2_alpha PF07541.7 gi|55380037|ref|YP_137887.1| - 7.5e-33 112.6 0.0 1.3e-32 111.8 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|55380037|ref|YP_137887.1| - 7e-16 58.0 0.5 1.8e-15 56.7 0.4 1.6 1 0 0 1 1 1 1 S1 RNA binding domain cwf21 PF08312.7 gi|55380037|ref|YP_137887.1| - 0.056 13.3 0.6 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 cwf21 domain Ribosomal_S27e PF01667.12 gi|55380038|ref|YP_137888.1| - 6.2e-18 64.0 0.3 6.5e-18 64.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|55380038|ref|YP_137888.1| - 0.0021 17.3 0.8 0.003 16.8 0.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|55380038|ref|YP_137888.1| - 0.01 15.7 0.4 0.014 15.2 0.3 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HypA PF01155.14 gi|55380038|ref|YP_137888.1| - 0.03 14.0 0.4 0.033 13.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|55380038|ref|YP_137888.1| - 0.036 13.7 0.4 0.048 13.3 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|55380038|ref|YP_137888.1| - 0.037 13.9 0.8 0.048 13.5 0.5 1.1 1 0 0 1 1 1 0 IBR domain zinc_ribbon_5 PF13719.1 gi|55380038|ref|YP_137888.1| - 0.037 13.6 2.8 0.26 10.9 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|55380038|ref|YP_137888.1| - 0.038 13.9 1.3 1.3 9.0 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.1 gi|55380038|ref|YP_137888.1| - 0.039 13.6 2.9 0.31 10.7 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|55380038|ref|YP_137888.1| - 0.073 12.8 0.6 0.097 12.4 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS91 PF14319.1 gi|55380038|ref|YP_137888.1| - 0.11 12.0 0.2 0.11 11.9 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Rubredoxin PF00301.15 gi|55380038|ref|YP_137888.1| - 0.12 12.2 0.5 11 5.9 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|55380038|ref|YP_137888.1| - 0.12 12.3 3.2 0.24 11.3 2.2 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|55380038|ref|YP_137888.1| - 0.12 11.8 0.4 0.12 11.8 0.3 2.0 1 1 1 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|55380038|ref|YP_137888.1| - 0.13 12.0 1.0 0.29 10.9 0.7 1.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|55380038|ref|YP_137888.1| - 0.14 11.9 1.8 0.25 11.2 1.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|55380038|ref|YP_137888.1| - 0.18 11.1 2.1 3.9 6.8 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|55380038|ref|YP_137888.1| - 0.2 11.1 0.8 0.32 10.4 0.5 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|55380038|ref|YP_137888.1| - 0.44 10.0 2.1 14 5.3 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|55380038|ref|YP_137888.1| - 0.57 9.9 5.2 2 8.1 3.6 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|55380038|ref|YP_137888.1| - 0.81 9.3 3.3 9 6.0 0.2 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|55380038|ref|YP_137888.1| - 0.83 8.9 3.5 6 6.2 2.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|55380038|ref|YP_137888.1| - 1.3 8.4 4.2 8.1 5.9 0.1 2.1 2 0 0 2 2 2 0 HypF finger DUF3797 PF12677.2 gi|55380038|ref|YP_137888.1| - 1.7 8.3 3.9 3.8 7.2 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Ribosomal_L44 PF00935.14 gi|55380039|ref|YP_137889.1| - 1e-28 99.0 1.9 1.3e-28 98.8 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|55380039|ref|YP_137889.1| - 0.0023 16.3 0.4 0.0027 16.1 0.3 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF2296 PF10058.4 gi|55380039|ref|YP_137889.1| - 0.0048 16.5 1.1 1.9 8.3 0.0 2.3 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) WCCH PF03716.9 gi|55380039|ref|YP_137889.1| - 0.012 15.0 2.8 0.021 14.2 1.9 1.4 1 0 0 1 1 1 0 WCCH motif zf-ribbon_3 PF13248.1 gi|55380039|ref|YP_137889.1| - 0.013 14.7 0.7 2.4 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|55380039|ref|YP_137889.1| - 0.013 15.7 0.1 0.024 14.9 0.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|55380039|ref|YP_137889.1| - 0.022 14.5 2.7 0.07 12.9 1.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF3133 PF11331.3 gi|55380039|ref|YP_137889.1| - 0.038 13.5 0.9 0.096 12.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Zn_Tnp_IS1595 PF12760.2 gi|55380039|ref|YP_137889.1| - 0.043 13.6 1.9 3.1 7.6 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|55380039|ref|YP_137889.1| - 0.043 13.6 0.9 0.067 13.0 0.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|55380039|ref|YP_137889.1| - 0.064 13.2 2.5 5 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-UBR PF02207.15 gi|55380039|ref|YP_137889.1| - 0.079 12.6 1.5 2.5 7.8 0.2 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zinc_ribbon_2 PF13240.1 gi|55380039|ref|YP_137889.1| - 0.086 12.3 4.8 2.3 7.7 1.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|55380039|ref|YP_137889.1| - 0.086 12.8 2.4 6.3 6.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain F-112 PF09645.5 gi|55380039|ref|YP_137889.1| - 0.14 12.0 0.1 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 F-112 protein Cys_rich_CPXG PF14255.1 gi|55380039|ref|YP_137889.1| - 0.19 11.5 0.2 0.19 11.5 0.2 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L33 PF00471.15 gi|55380039|ref|YP_137889.1| - 1.5 9.0 5.4 0.24 11.6 1.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L33 DUF2298 PF10060.4 gi|55380042|ref|YP_137892.1| - 1.7e-148 495.4 20.7 1.7e-148 495.4 14.3 1.4 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.21 gi|55380043|ref|YP_137893.1| - 8.6e-11 41.7 0.0 1.1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55380043|ref|YP_137893.1| - 0.053 13.3 0.1 0.075 12.8 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 GtrA PF04138.9 gi|55380044|ref|YP_137894.1| - 2.4e-21 75.8 6.7 3.3e-21 75.4 4.6 1.2 1 0 0 1 1 1 1 GtrA-like protein ABC2_membrane_5 PF13346.1 gi|55380045|ref|YP_137895.1| - 0.0045 16.3 0.0 0.0055 16.0 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Virul_fac_BrkB PF03631.10 gi|55380045|ref|YP_137895.1| - 0.0096 15.3 1.2 0.011 15.1 0.8 1.1 1 0 0 1 1 1 1 Virulence factor BrkB Peptidase_M50B PF13398.1 gi|55380045|ref|YP_137895.1| - 0.01 15.2 0.6 0.011 15.0 0.4 1.0 1 0 0 1 1 1 0 Peptidase M50B-like DUF368 PF04018.8 gi|55380045|ref|YP_137895.1| - 0.045 12.9 0.3 0.052 12.7 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF368) Sulfate_transp PF00916.15 gi|55380045|ref|YP_137895.1| - 0.047 12.6 0.6 0.051 12.5 0.4 1.0 1 0 0 1 1 1 0 Sulfate transporter family MHYT PF03707.11 gi|55380045|ref|YP_137895.1| - 1.2 9.3 5.5 0.66 10.1 1.5 1.9 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat Pribosyltran PF00156.22 gi|55380046|ref|YP_137896.1| - 2.6e-15 56.2 0.8 3.4e-15 55.8 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|55380046|ref|YP_137896.1| - 0.0013 17.9 0.2 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase AIRC PF00731.15 gi|55380046|ref|YP_137896.1| - 0.054 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 AIR carboxylase DUF945 PF06097.6 gi|55380046|ref|YP_137896.1| - 0.1 11.3 0.0 0.13 11.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DUF1628 PF07790.6 gi|55380049|ref|YP_137899.1| - 3e-28 98.4 1.7 3e-28 98.4 1.2 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF4229 PF14012.1 gi|55380050|ref|YP_137900.1| - 0.0053 16.6 1.6 0.0099 15.7 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4229) Myelin_PLP PF01275.14 gi|55380050|ref|YP_137900.1| - 0.1 11.9 0.7 0.16 11.2 0.5 1.3 1 0 0 1 1 1 0 Myelin proteolipid protein (PLP or lipophilin) DUF1628 PF07790.6 gi|55380051|ref|YP_137901.1| - 1.7e-27 95.9 2.2 1.7e-27 95.9 1.5 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Oxidored_q1 PF00361.15 gi|55380052|ref|YP_137902.1| - 2.2e-41 141.8 8.0 2.2e-41 141.8 5.6 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Arif-1 PF06770.6 gi|55380052|ref|YP_137902.1| - 0.028 13.7 0.5 0.028 13.7 0.3 2.3 2 0 0 2 2 2 0 Actin-rearrangement-inducing factor (Arif-1) Oxidored_q1 PF00361.15 gi|55380053|ref|YP_137903.1| - 3.5e-57 193.7 1.3 5.5e-57 193.0 0.2 1.8 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|55380053|ref|YP_137903.1| - 0.0004 19.8 0.0 0.0015 18.0 0.0 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|55380054|ref|YP_137904.1| - 5.2e-50 170.2 12.4 9.6e-50 169.3 8.6 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|55380054|ref|YP_137904.1| - 3.6e-07 29.5 12.3 3.6e-07 29.5 8.5 2.9 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|55380055|ref|YP_137905.1| - 1.8e-24 85.1 1.3 2.1e-24 84.8 0.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Na_H_Exchanger PF00999.16 gi|55380055|ref|YP_137905.1| - 0.00095 17.7 2.0 0.0012 17.5 1.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Wzy_C PF04932.10 gi|55380055|ref|YP_137905.1| - 10 5.9 7.6 22 4.7 5.3 1.6 1 1 0 1 1 1 0 O-Antigen ligase MnhB PF04039.8 gi|55380056|ref|YP_137906.1| - 4.4e-21 75.2 19.6 6.3e-21 74.7 13.6 1.3 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.1 gi|55380057|ref|YP_137907.1| - 3.1e-21 75.1 7.6 3.1e-21 75.1 5.3 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.15 gi|55380057|ref|YP_137907.1| - 0.038 13.7 2.4 0.059 13.1 1.6 1.4 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PhaG_MnhG_YufB PF03334.9 gi|55380058|ref|YP_137908.1| - 3.9e-26 90.9 7.5 4.5e-26 90.7 5.2 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit PRA1 PF03208.14 gi|55380058|ref|YP_137908.1| - 0.16 11.2 1.2 0.25 10.6 0.8 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF2611 PF11022.3 gi|55380058|ref|YP_137908.1| - 2.9 8.0 4.5 3.9 7.6 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2611) MrpF_PhaF PF04066.8 gi|161723230|ref|YP_137909.2| - 1.4e-16 60.4 2.9 1.4e-16 60.4 2.0 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) 3Beta_HSD PF01073.14 gi|161723230|ref|YP_137909.2| - 0.044 12.4 0.1 0.053 12.2 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF2105 PF09878.4 gi|161723230|ref|YP_137909.2| - 0.045 13.3 2.5 0.047 13.2 1.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) MNHE PF01899.11 gi|161723229|ref|YP_137910.2| - 1.6e-30 105.8 0.6 2.3e-30 105.2 0.4 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Usp PF00582.21 gi|161723229|ref|YP_137910.2| - 0.036 14.2 0.6 0.091 12.9 0.4 1.6 1 0 0 1 1 1 0 Universal stress protein family DFP PF04127.10 gi|55380061|ref|YP_137911.1| - 1.3e-50 171.5 1.9 1.4e-49 168.2 0.2 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|55380061|ref|YP_137911.1| - 2.8e-25 88.4 0.1 7.1e-25 87.1 0.1 1.7 1 0 0 1 1 1 1 Flavoprotein DUF58 PF01882.13 gi|55380063|ref|YP_137913.1| - 6.6e-13 48.6 0.1 3.9e-12 46.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|55380063|ref|YP_137913.1| - 5e-09 36.0 3.5 5e-09 36.0 0.6 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|55380063|ref|YP_137913.1| - 3.2e-05 23.8 1.4 7.4e-05 22.7 0.1 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|55380063|ref|YP_137913.1| - 0.00012 22.0 0.0 0.00031 20.7 0.0 1.7 1 0 0 1 1 1 1 CARDB TRAP_beta PF05753.9 gi|55380063|ref|YP_137913.1| - 0.00045 19.4 0.0 0.00066 18.8 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) Glyco_trans_4_4 PF13579.1 gi|55380063|ref|YP_137913.1| - 0.031 14.4 1.4 0.031 14.4 1.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Toprim_3 PF13362.1 gi|55380063|ref|YP_137913.1| - 0.097 12.9 0.0 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Toprim domain Fn3-like PF14310.1 gi|55380063|ref|YP_137913.1| - 0.12 12.3 0.1 3.1 7.8 0.0 2.5 2 0 0 2 2 2 0 Fibronectin type III-like domain DUF1109 PF06532.6 gi|55380064|ref|YP_137914.1| - 0.0062 15.9 0.8 0.0092 15.4 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1109) HTH_Tnp_ISL3 PF13542.1 gi|55380064|ref|YP_137914.1| - 0.13 11.4 0.6 0.22 10.7 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF4129 PF13559.1 gi|55380065|ref|YP_137915.1| - 1.6e-12 47.2 6.4 2.5e-12 46.5 4.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Peptidase_M48 PF01435.13 gi|55380066|ref|YP_137916.1| - 1.7e-29 103.0 0.0 2.3e-19 69.8 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.6 gi|55380066|ref|YP_137916.1| - 2.6e-05 23.3 1.0 8.6e-05 21.6 0.0 2.1 1 1 1 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|55380066|ref|YP_137916.1| - 0.0055 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily SprT-like PF10263.4 gi|55380066|ref|YP_137916.1| - 0.061 12.9 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2201_N PF13203.1 gi|55380066|ref|YP_137916.1| - 0.068 12.3 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative metallopeptidase domain FAD_binding_2 PF00890.19 gi|55380067|ref|YP_137917.1| - 2e-10 40.0 3.1 1.9e-05 23.7 1.1 2.6 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|55380067|ref|YP_137917.1| - 3e-09 37.0 0.5 3.2e-05 23.8 0.2 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55380067|ref|YP_137917.1| - 3.7e-09 35.9 2.8 0.0012 17.8 1.3 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|55380067|ref|YP_137917.1| - 8.2e-05 21.6 0.1 0.00015 20.7 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|55380067|ref|YP_137917.1| - 9.5e-05 22.3 0.3 0.0093 15.9 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|55380067|ref|YP_137917.1| - 0.00023 20.2 0.0 0.038 12.8 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|55380067|ref|YP_137917.1| - 0.00024 19.6 0.0 0.0041 15.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|55380067|ref|YP_137917.1| - 0.00036 20.6 1.4 0.051 13.6 0.0 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55380067|ref|YP_137917.1| - 0.00096 18.3 0.6 0.0018 17.4 0.1 1.6 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|55380067|ref|YP_137917.1| - 0.00098 18.3 1.1 0.0017 17.5 0.8 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|55380067|ref|YP_137917.1| - 0.001 17.7 0.1 1.1 7.8 0.4 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|55380067|ref|YP_137917.1| - 0.0021 18.4 0.0 0.016 15.5 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|55380067|ref|YP_137917.1| - 0.019 14.7 1.8 1.4 8.6 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|55380067|ref|YP_137917.1| - 0.022 13.8 2.2 0.12 11.4 1.0 2.0 1 1 1 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|55380067|ref|YP_137917.1| - 0.052 13.1 0.1 0.65 9.6 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3523 PF12037.3 gi|55380067|ref|YP_137917.1| - 0.31 9.9 0.0 0.31 9.9 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3523) AAA PF00004.24 gi|55380068|ref|YP_137918.1| - 1.3e-44 151.5 2.8 1.6e-44 151.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|55380068|ref|YP_137918.1| - 2e-09 37.5 2.3 3e-09 37.0 0.0 2.5 3 0 0 3 3 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|55380068|ref|YP_137918.1| - 1.7e-07 30.4 0.1 4.4e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|55380068|ref|YP_137918.1| - 4.3e-06 26.5 0.3 5.9e-05 22.8 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|55380068|ref|YP_137918.1| - 5.3e-06 27.2 1.8 1.6e-05 25.6 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|55380068|ref|YP_137918.1| - 1.1e-05 25.5 3.3 0.00015 21.9 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|55380068|ref|YP_137918.1| - 3.5e-05 23.8 0.3 3.5e-05 23.8 0.2 3.8 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|55380068|ref|YP_137918.1| - 0.0002 21.0 0.2 0.021 14.5 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_14 PF13173.1 gi|55380068|ref|YP_137918.1| - 0.00024 20.9 0.1 0.001 18.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|55380068|ref|YP_137918.1| - 0.00026 19.8 0.9 0.00074 18.3 0.0 2.1 2 1 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|55380068|ref|YP_137918.1| - 0.00034 20.3 0.1 0.00098 18.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|55380068|ref|YP_137918.1| - 0.00035 19.6 0.2 0.0012 17.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|55380068|ref|YP_137918.1| - 0.00037 20.3 0.9 0.0014 18.5 0.0 2.3 2 2 0 3 3 1 1 AAA domain IstB_IS21 PF01695.12 gi|55380068|ref|YP_137918.1| - 0.0014 18.0 0.2 0.0039 16.6 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|55380068|ref|YP_137918.1| - 0.0019 17.8 0.2 0.026 14.1 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|55380068|ref|YP_137918.1| - 0.0019 17.7 0.2 0.036 13.5 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|55380068|ref|YP_137918.1| - 0.002 17.2 0.0 0.0061 15.7 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|55380068|ref|YP_137918.1| - 0.0031 17.8 2.9 0.013 15.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain ATG16 PF08614.6 gi|55380068|ref|YP_137918.1| - 0.0038 17.0 9.3 0.0038 17.0 6.5 2.5 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) Zeta_toxin PF06414.7 gi|55380068|ref|YP_137918.1| - 0.0042 16.1 0.4 0.012 14.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|55380068|ref|YP_137918.1| - 0.0049 16.8 1.2 0.015 15.2 0.0 2.5 2 1 1 3 3 2 1 AAA domain RNA_helicase PF00910.17 gi|55380068|ref|YP_137918.1| - 0.014 15.5 0.0 0.044 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase bZIP_1 PF00170.16 gi|55380068|ref|YP_137918.1| - 0.014 15.3 13.0 0.12 12.2 3.7 2.7 1 1 1 2 2 2 0 bZIP transcription factor TUDOR PF00567.19 gi|55380068|ref|YP_137918.1| - 0.015 15.1 1.3 0.023 14.5 0.0 2.0 2 0 0 2 2 1 0 Tudor domain Torsin PF06309.6 gi|55380068|ref|YP_137918.1| - 0.016 15.1 0.1 0.049 13.5 0.0 1.8 2 0 0 2 2 1 0 Torsin Sigma54_activ_2 PF14532.1 gi|55380068|ref|YP_137918.1| - 0.016 15.2 1.2 0.046 13.7 0.0 2.5 4 1 0 4 4 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|55380068|ref|YP_137918.1| - 0.023 14.3 4.0 0.14 11.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain CPT PF07931.7 gi|55380068|ref|YP_137918.1| - 0.024 14.2 0.1 0.057 13.0 0.0 1.8 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein UPF0079 PF02367.12 gi|55380068|ref|YP_137918.1| - 0.039 13.5 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF3373 PF11853.3 gi|55380068|ref|YP_137918.1| - 0.039 12.4 2.8 0.074 11.5 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) AAA_25 PF13481.1 gi|55380068|ref|YP_137918.1| - 0.042 13.2 10.0 0.13 11.5 0.1 3.5 3 1 1 4 4 4 0 AAA domain ResIII PF04851.10 gi|55380068|ref|YP_137918.1| - 0.042 13.6 2.2 1.3 8.8 0.0 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_24 PF13479.1 gi|55380068|ref|YP_137918.1| - 0.043 13.4 0.3 0.27 10.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain Creatininase PF02633.9 gi|55380068|ref|YP_137918.1| - 0.045 12.8 0.0 0.079 12.0 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase NB-ARC PF00931.17 gi|55380068|ref|YP_137918.1| - 0.053 12.3 0.0 0.053 12.3 0.0 2.3 3 0 0 3 3 2 0 NB-ARC domain NTPase_1 PF03266.10 gi|55380068|ref|YP_137918.1| - 0.061 13.0 5.4 0.45 10.2 0.1 3.4 2 2 2 4 4 4 0 NTPase ABC_tran PF00005.22 gi|55380068|ref|YP_137918.1| - 0.077 13.2 6.2 0.2 11.9 0.0 3.0 2 1 0 2 2 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|55380068|ref|YP_137918.1| - 0.086 12.3 0.1 3.3 7.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain vATP-synt_E PF01991.13 gi|55380068|ref|YP_137918.1| - 0.097 11.9 8.8 0.7 9.1 6.1 2.2 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Atg14 PF10186.4 gi|55380068|ref|YP_137918.1| - 0.11 11.3 3.5 0.19 10.6 2.4 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|55380068|ref|YP_137918.1| - 0.13 10.6 6.4 0.23 9.8 4.5 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Arch_ATPase PF01637.13 gi|55380068|ref|YP_137918.1| - 0.14 11.8 1.5 1.8 8.2 0.0 2.8 2 1 0 2 2 2 0 Archaeal ATPase DUF2075 PF09848.4 gi|55380068|ref|YP_137918.1| - 0.29 10.0 0.0 0.29 10.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) GrpE PF01025.14 gi|55380068|ref|YP_137918.1| - 0.31 10.5 17.3 0.02 14.4 7.3 2.4 3 1 0 3 3 2 0 GrpE ADIP PF11559.3 gi|55380068|ref|YP_137918.1| - 0.43 10.4 12.5 0.075 12.9 5.6 1.9 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding KaiC PF06745.8 gi|55380068|ref|YP_137918.1| - 0.45 9.5 7.9 0.76 8.8 0.0 3.4 3 1 1 4 4 3 0 KaiC TMF_DNA_bd PF12329.3 gi|55380068|ref|YP_137918.1| - 0.8 9.5 12.2 3.2 7.6 8.5 2.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|55380068|ref|YP_137918.1| - 0.83 9.2 15.6 2.1 7.9 10.8 1.8 1 1 0 1 1 1 0 IncA protein V_ATPase_I PF01496.14 gi|55380068|ref|YP_137918.1| - 1.2 6.9 4.9 1.6 6.4 3.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|55380068|ref|YP_137918.1| - 1.6 9.0 12.9 7 7.0 8.4 2.4 2 1 0 2 2 1 0 Protein of unknown function (DUF904) Herpes_BLRF2 PF05812.7 gi|55380068|ref|YP_137918.1| - 3.1 7.6 11.6 1.1 9.0 1.4 2.5 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein SlyX PF04102.7 gi|55380068|ref|YP_137918.1| - 3.5 8.0 8.9 1 9.7 2.5 2.7 1 1 1 2 2 2 0 SlyX AAA_23 PF13476.1 gi|55380068|ref|YP_137918.1| - 6.4 7.0 0.0 6.4 7.0 0.0 2.7 2 1 0 2 2 1 0 AAA domain APG6 PF04111.7 gi|55380068|ref|YP_137918.1| - 7.8 5.4 14.8 8 5.4 9.4 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF420 PF04238.7 gi|55380069|ref|YP_137919.1| - 2.2e-35 121.5 13.6 2.2e-35 121.5 9.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|55380069|ref|YP_137919.1| - 0.0022 18.1 2.2 0.0022 18.1 1.6 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) DUF4084 PF13321.1 gi|55380069|ref|YP_137919.1| - 0.045 12.9 3.3 0.059 12.6 2.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4084) Frag1 PF10277.4 gi|55380069|ref|YP_137919.1| - 0.24 10.8 8.3 0.39 10.1 5.8 1.4 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family Bax1-I PF01027.15 gi|55380069|ref|YP_137919.1| - 0.86 9.1 15.2 3.9 7.0 10.5 1.9 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 YfhO PF09586.5 gi|55380069|ref|YP_137919.1| - 3.4 5.5 5.9 4.4 5.2 4.1 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Cytochrom_B561 PF03188.11 gi|55380069|ref|YP_137919.1| - 3.7 7.3 19.4 0.9 9.3 5.7 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 DUF3112 PF11309.3 gi|55380069|ref|YP_137919.1| - 5 6.8 8.6 0.54 10.0 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3112) HD PF01966.17 gi|55380070|ref|YP_137920.1| - 6e-10 39.1 1.2 1.9e-09 37.5 0.9 2.0 1 0 0 1 1 1 1 HD domain Clp_N PF02861.15 gi|55380070|ref|YP_137920.1| - 0.036 13.9 0.2 3.6 7.5 0.0 3.0 2 0 0 2 2 2 0 Clp amino terminal domain HDOD PF08668.7 gi|55380070|ref|YP_137920.1| - 0.053 12.7 0.0 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 HDOD domain Amidohydro_1 PF01979.15 gi|55380071|ref|YP_137921.1| - 3.9e-15 56.3 0.1 5.7e-13 49.2 0.0 2.0 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|55380071|ref|YP_137921.1| - 3.6e-08 32.6 0.0 5.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_4 PF13147.1 gi|55380071|ref|YP_137921.1| - 1.8e-07 31.5 1.4 3.4e-07 30.5 1.0 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55380071|ref|YP_137921.1| - 0.03 13.5 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase family SHOCT PF09851.4 gi|55380072|ref|YP_137922.1| - 3.4e-07 29.5 0.5 7.2e-07 28.4 0.4 1.6 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|55380072|ref|YP_137922.1| - 0.00076 19.1 4.5 0.0011 18.6 0.5 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF1707) DUF2207 PF09972.4 gi|55380072|ref|YP_137922.1| - 0.1 11.2 3.5 0.11 11.0 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DoxD PF04173.8 gi|55380072|ref|YP_137922.1| - 0.12 12.0 3.5 0.15 11.7 2.4 1.1 1 0 0 1 1 1 0 TQO small subunit DoxD DUF1387 PF07139.6 gi|55380072|ref|YP_137922.1| - 0.13 11.8 0.7 0.15 11.6 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) HemY_N PF07219.8 gi|55380072|ref|YP_137922.1| - 0.96 9.0 3.2 4 7.0 2.2 1.9 1 1 0 1 1 1 0 HemY protein N-terminus ABC2_membrane_3 PF12698.2 gi|55380072|ref|YP_137922.1| - 6.6 5.6 12.6 8.4 5.3 8.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Usp PF00582.21 gi|55380073|ref|YP_137923.1| - 1.6e-37 128.8 0.6 1.8e-37 128.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family